BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus
Liberibacter asiaticus str. psy62]
         (723 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040428|gb|ACT57224.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
          Length = 723

 Score =  652 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 723/723 (100%), Positives = 723/723 (100%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL
Sbjct: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL
Sbjct: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE
Sbjct: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR
Sbjct: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ
Sbjct: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
           TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA
Sbjct: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST
Sbjct: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV
Sbjct: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD
Sbjct: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
           EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI
Sbjct: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
           DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK
Sbjct: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720

Query: 721 RRK 723
           RRK
Sbjct: 721 RRK 723


>gi|77462682|ref|YP_352186.1| RNAse E [Rhodobacter sphaeroides 2.4.1]
 gi|77387100|gb|ABA78285.1| RNAse E [Rhodobacter sphaeroides 2.4.1]
          Length = 936

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 346/768 (45%), Positives = 447/768 (58%), Gaps = 46/768 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--------------- 105
           YGGNRHGFL F EIHPDYYQIP +DR+ALL+E        +                   
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA 120

Query: 106 -------------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139
                              + T  D     D S    A          +E          
Sbjct: 121 SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS 180

Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
             ++++ S  ++          K   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY
Sbjct: 181 DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 240

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           LSLAGRY VLMPNT++G  ISRKIT   DRK LKEIA  LEVP G G+I+RTAGA RTK 
Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ 300

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           EI+RD+EYL+RLW+ +R+L L SVAP  +YEEG+LIKR IRDL+ ++I E++V GE GYR
Sbjct: 301 EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR 360

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            AKDFM+++MP++AR V +Y++P P+F R  +E  L  +    V L S GY++I  TEAL
Sbjct: 361 TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL 420

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V
Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 480

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+
Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL 540

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           AL +LR +EE   +  +  +++     VV +L+N KR  I   EAR+G+++ V     L+
Sbjct: 541 ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS 600

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-----DEALLPIPKSESLED 614
              + IEK      +V    KV S S         E          E +    +     +
Sbjct: 601 SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVADAAE 660

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              +    +     R+RRR        +D  + G   D S             +E +   
Sbjct: 661 AAPSEGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAAV 720

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                E              P  + P    +        K+TR  K +
Sbjct: 721 PELAPEAVVSAPEPAAAEPEPTPADPVAAPAAEEPAAPRKRTRTRKPK 768


>gi|146276768|ref|YP_001166927.1| ribonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145555009|gb|ABP69622.1| RNAse E [Rhodobacter sphaeroides ATCC 17025]
          Length = 869

 Score =  519 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 358/759 (47%), Positives = 463/759 (61%), Gaps = 37/759 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVA---------------- 104
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E        E                   
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRKALIEEERAYARAEEDEDHGRSRRRSRPAPAEAP 120

Query: 105 --DDVTHGDVTIPNDHSL-EEVAPIANFSQETEE---------------ESIISANNDVV 146
             D V  GDV   +   L EE    A +  E  E               +     ++++ 
Sbjct: 121 SADAVQSGDVGGMDVVDLGEETGADALYETERGEARPEADEAEKPWKAVDHAAETDDEIE 180

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
           S  ++          K  +R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY
Sbjct: 181 SVADEDVAEEIPAPRKPRQRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRY 240

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            VLMPNT++G  ISRKIT   DRK LKEIA  LEVP G G+I+RTAGA RTK EI+RD+E
Sbjct: 241 CVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYE 300

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YL+RLW+ +REL L SVAP  +YEEG+LIKR+IRDL+ ++I E++V GE GYR AKDFM+
Sbjct: 301 YLLRLWEQIRELTLKSVAPAPIYEEGDLIKRSIRDLFNREIEEVLVEGETGYRTAKDFMR 360

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
           ++MP++AR V +Y++P P+F R  +E  L  +    V L S GY++I  TEALV+IDVNS
Sbjct: 361 MIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVNS 420

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           GR+T+E  IEDTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK+LK+ 
Sbjct: 421 GRATKEGSIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKDK 480

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+AL +LR 
Sbjct: 481 LKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQVLRQ 540

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           +EE   +  +  +++     VV +L+NQKR  I   EAR+G+++ V     L+   + IE
Sbjct: 541 LEEEGTRKRSKEVLLRAPIAVVNFLMNQKREHIAMIEARYGMAVRVEADPSLSSPDYVIE 600

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ---DEALLPIPKSESLEDIQDNIVSEE 623
           K      +V    KV S S         E       +E  +   +              E
Sbjct: 601 KFKTATRVVPETVKVISGSADLMGAPVDEPEDDWIEEEPEVEEAEEAVEAAEPAEAAPSE 660

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                ++RRRRRRR          G  +  S   +  D+  D   +  D+          
Sbjct: 661 GQPKKKRRRRRRRRNGANGATDQTGAEAAESDESDDSDEDEDETADEGDVPEPAAFVPEM 720

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                  + +  PV+ P  E    + +P   + R   R+
Sbjct: 721 APEAVIAEPAAEPVAEPVAEPEAVAEEPPAPRKRTRVRK 759


>gi|126461575|ref|YP_001042689.1| ribonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126103239|gb|ABN75917.1| RNAse E [Rhodobacter sphaeroides ATCC 17029]
          Length = 890

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 329/640 (51%), Positives = 416/640 (65%), Gaps = 41/640 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--------------- 105
           YGGNRHGFL F EIHPDYYQIP +DR+ALL+E        +                   
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA 120

Query: 106 -------------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139
                              + T  D     D S    A          +E          
Sbjct: 121 SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS 180

Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
             ++++ S  ++          K   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY
Sbjct: 181 DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 240

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           LSLAGRY VLMPNT++G  ISRKIT   DRK LKEIA  LEVP G G+I+RTAGA RTK 
Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ 300

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           EI+RD+EYL+RLW+ +R+L L SVAP  +YEEG+LIKR IRDL+ ++I E++V GE GYR
Sbjct: 301 EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR 360

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            AKDFM+++MP++AR V +Y++P P+F R  +E  L  +    V L S GY++I  TEAL
Sbjct: 361 TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL 420

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V
Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 480

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+
Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL 540

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           AL +LR +EE   +  +  +++     VV +L+N KR  I   EAR+G+++ V     L+
Sbjct: 541 ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS 600

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
              + IEK      +V    KV S S         E    
Sbjct: 601 SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDD 640


>gi|332557565|ref|ZP_08411887.1| ribonuclease E [Rhodobacter sphaeroides WS8N]
 gi|332275277|gb|EGJ20592.1| ribonuclease E [Rhodobacter sphaeroides WS8N]
          Length = 892

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 329/640 (51%), Positives = 416/640 (65%), Gaps = 41/640 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--------------- 105
           YGGNRHGFL F EIHPDYYQIP +DR+ALL+E        +                   
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA 120

Query: 106 -------------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139
                              + T  D     D S    A          +E          
Sbjct: 121 SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS 180

Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
             ++++ S  ++          K   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY
Sbjct: 181 DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 240

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           LSLAGRY VLMPNT++G  ISRKIT   DRK LKEIA  LEVP G G+I+RTAGA RTK 
Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ 300

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           EI+RD+EYL+RLW+ +R+L L SVAP  +YEEG+LIKR IRDL+ ++I E++V GE GYR
Sbjct: 301 EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR 360

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            AKDFM+++MP++AR V +Y++P P+F R  +E  L  +    V L S GY++I  TEAL
Sbjct: 361 TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL 420

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V
Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 480

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+
Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL 540

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           AL +LR +EE   +  +  +++     VV +L+N KR  I   EAR+G+++ V     L+
Sbjct: 541 ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS 600

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
              + IEK      +V    KV S S         E    
Sbjct: 601 SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDD 640


>gi|84517078|ref|ZP_01004434.1| Ribonuclease E [Loktanella vestfoldensis SKA53]
 gi|84508973|gb|EAQ05434.1| Ribonuclease E [Loktanella vestfoldensis SKA53]
          Length = 865

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 346/771 (44%), Positives = 457/771 (59%), Gaps = 48/771 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KMLIDA+H EETRVVV+  N+VEE DFES+ K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 4   MPKKMLIDATHAEETRVVVVDGNKVEEFDFESQFKRQLAGNIYLAKVTRVEPSLQAAFVD 63

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH----------- 109
           YGGNRHGFL F EIHPDYYQIP +DR+AL+ E        +A  D+              
Sbjct: 64  YGGNRHGFLAFAEIHPDYYQIPVADREALMAEERAYAESLKAEEDEEDAPKQPRRRTRSK 123

Query: 110 ---GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV----------------- 149
                V   +        P+   + + +++   S+  ++V                    
Sbjct: 124 SRAAPVEGSDAVVTSGDDPVGLETIDLDDDLEGSSPMELVGETPVETPAADEDIDDATAD 183

Query: 150 -------EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
                  E         V K   R+Y IQEVIK RQILL+Q+VKEERGNKGAA+TTYLSL
Sbjct: 184 DAIESVAETDDIDDMRPVRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSL 243

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRY VLMPNT++G  ISRKITN VDRK LKEIA  + VP G G+I+RTAG+ RTK EIK
Sbjct: 244 AGRYCVLMPNTARGGGISRKITNAVDRKKLKEIASEMTVPDGAGLIIRTAGSQRTKAEIK 303

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
           RD+EYL R+W+ +REL L S+AP  +YEEG+LIKR+IRDLY KDI E+IV+GE GYR AK
Sbjct: 304 RDYEYLQRMWEQIRELTLKSIAPARIYEEGDLIKRSIRDLYSKDIDEVIVAGEAGYRSAK 363

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
           DFM+++MPS+A+ V+ Y +P PI+ R  +E  L  +    V LPS GY++I  TEALV+I
Sbjct: 364 DFMRMIMPSHAKNVKFYAEPMPIYARYQVETYLAGMFNPTVQLPSGGYIVIGITEALVAI 423

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSGR+T+E  IE TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+
Sbjct: 424 DVNSGRATKEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKR 483

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            K+ LK DRAR+QVG IS FGL+EMSRQR+R  +LE+TT++C++C G G +RS  +VALS
Sbjct: 484 FKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEATTQMCSHCHGTGLLRSDDNVALS 543

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
           ILR +EE  ++  +  ++V     +  +L+N KR  I E EA +G+S+ V     L    
Sbjct: 544 ILRQLEEEGVRARSKEVLVRAPIAIANFLMNGKRENIAEIEACYGMSVRVECDPVLISPD 603

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDK------NIECVWQDEALLPIPKSESL---E 613
           F +EK      +V     + + +     D+            +++A+ P PK+ +     
Sbjct: 604 FVVEKFKTATRIVPEAAPIVASALLMDDDEDDDLIIETPDEDEEDAVAPTPKAAAAVLDA 663

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
              D     +     R+RRR      P  +  +     D +   +    +     +P   
Sbjct: 664 PEADGEDRPKRKRRRRRRRRTGAGDAPQAEGAEPSDAEDEALPLSEPATASATEDKPKRR 723

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK-TRWWKRRK 723
                    A        V+   + TP    +            R   RRK
Sbjct: 724 RTRTRKSADAAPQEVVETVAEAVMDTPVAAQAAQEPAQDATPAKRIRSRRK 774


>gi|260577098|ref|ZP_05845076.1| ribonuclease, Rne/Rng family [Rhodobacter sp. SW2]
 gi|259020676|gb|EEW23994.1| ribonuclease, Rne/Rng family [Rhodobacter sp. SW2]
          Length = 870

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 332/669 (49%), Positives = 432/669 (64%), Gaps = 41/669 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHSEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD-------------- 106
           YGGNRHGFL F EIHPDYYQIP +DR+ALL+E        +   ++              
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERALNRAEDDEDNNRSRRSSPRPRRDAP 120

Query: 107 --------------------VTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139
                               V  G+ T  +   ++  A  A  S++ E E          
Sbjct: 121 RAEAVAADPVKTAEIEGMDVVDLGEETGADALFVQRNADRAEVSRDDEAEQPYRAVDHAS 180

Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
             ++++ S  E+      +   K   R+Y IQEV+K RQI+LVQ+VKEERGNKGAA+TTY
Sbjct: 181 ETDDEIESIAEEDVAEEIQAPRKPRIRRYKIQEVVKVRQIMLVQVVKEERGNKGAALTTY 240

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           LSLAGRY VLMPNT++G  ISRKIT   DRK LKEIA+ +EVP G G+I+RTAGA RTK 
Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITMAADRKKLKEIAQEIEVPEGAGLIIRTAGAKRTKA 300

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           EI+RD+EYLMR+W+ VREL L S+AP  +YEEG++IKR+IRDLY ++I EI+V G +GYR
Sbjct: 301 EIRRDYEYLMRMWEQVRELTLRSMAPAPIYEEGDIIKRSIRDLYNREIDEILVEGAEGYR 360

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            AKDFM+++MPS+A+ V+ Y +P P+F R  +E  L  +    V L S GY++I  TEAL
Sbjct: 361 TAKDFMRMIMPSHAKAVQLYNEPMPLFARFQVEGYLAGMFNPTVQLKSGGYIVIGVTEAL 420

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE++NN SV
Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERRNNASV 480

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+
Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSL 540

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           AL ILR++EE   +  +  +++     V+ +L+NQKR  I   EAR+ +S+ +     L 
Sbjct: 541 ALQILRALEEEGTRKRSKEVLLKGPVAVINFLMNQKREHIALIEARYAMSVRIEADPALV 600

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
              + IEK      +V   H       A      ++    D     IP+ +  E     +
Sbjct: 601 SPDYLIEKFKTATRVVPEHHSAAISGNAAMMGAPVDEADDDLIDEDIPEDDEDEVEAAPV 660

Query: 620 VSEESTGVI 628
                    
Sbjct: 661 AEAREPRPE 669


>gi|149914991|ref|ZP_01903520.1| ribonuclease E, putative [Roseobacter sp. AzwK-3b]
 gi|149811179|gb|EDM71016.1| ribonuclease E, putative [Roseobacter sp. AzwK-3b]
          Length = 926

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 341/767 (44%), Positives = 444/767 (57%), Gaps = 62/767 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT------------ 108
           YGGNRHGFL F EIHPDYYQIP +DR+ L++E         A  DD              
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADREKLMEEERAYAEAMRAKEDDDEKPKSRRRSRSRS 120

Query: 109 ---------------HGDVTIPNDHSLEEVAPIANFSQETEEESIIS------------- 140
                           GDV       L++  P      E   E+ +              
Sbjct: 121 KAEAVEDKDAVIRDTSGDVAGMETIDLDDEVPEGTSPMEIVGETPVEEPQDSADLSEDDD 180

Query: 141 --------------ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186
                          ++ + S  +D          K   R+Y IQEVIK RQILLVQ+VK
Sbjct: 181 HHDDEDERRSDASFKDDSIESVADDDDHEDIRPQHKPRPRKYKIQEVIKVRQILLVQVVK 240

Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246
           EERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN VDRK LKEIA  ++VP G G
Sbjct: 241 EERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIANEIDVPQGAG 300

Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
           +I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP  +YEEG+LIKR+IRDLY +D
Sbjct: 301 LIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRD 360

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
           I E++V GE+GYR AKDFMK++MPS+A+ V+ Y D  P+F R  +E  L S+    V L 
Sbjct: 361 IDEVLVEGEQGYRIAKDFMKMIMPSHAKNVKHYADTMPLFARFQVESYLSSMFNPTVQLR 420

Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
           S GY++I  TEALV+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+D
Sbjct: 421 SGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVID 480

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDM+E++NN +VEK+ K+ LK DRAR+QVG IS FGLLEMSRQR+R  ++E+TT+ C  
Sbjct: 481 FIDMDERRNNAAVEKRFKDKLKSDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPA 540

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G G IRS  +++LSILR +EE  ++  +  ++V     V  YL+NQKR  + + E R+
Sbjct: 541 CHGTGLIRSDDNLSLSILRQIEEEGVRRRSREVLVKCPVAVANYLMNQKREHVAQIELRY 600

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           G+S+ +     L    F +EK       V           +   D   + +  +      
Sbjct: 601 GLSVRIEGDPMLISPDFSLEKFKTATRSVPEAVAPVVSVDSSLMDDVDDAIEDEIDDDVE 660

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             + S  D       ++  G  +         +               + +N   +  + 
Sbjct: 661 ADTVSDADGDRTQDDDQENGEGKP--------KKRRRRRRRSRSKSKGNGENAAANGDEA 712

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             + +D       +    G  E    S    +    E     ++   
Sbjct: 713 EDQGADDAPSEAAKPADEGAAEVVAGSDEVKADQPAEEDAPQAEAKP 759


>gi|329115662|ref|ZP_08244384.1| Ribonuclease E [Acetobacter pomorum DM001]
 gi|326695090|gb|EGE46809.1| Ribonuclease E [Acetobacter pomorum DM001]
          Length = 999

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 298/671 (44%), Positives = 414/671 (61%), Gaps = 15/671 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +MLIDA+H EETRVVV+  NR+E+ D ES  KKQ+KGNIYLA+V RVEPSLQAAFV+
Sbjct: 54  MSKRMLIDATHAEETRVVVMDGNRLEDYDVESAAKKQLKGNIYLARVVRVEPSLQAAFVE 113

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK---ESNIAQTDSEAVADDVTHGDVTIPND 117
           YGGNRHGFL F EIHPDYYQIP SDR+ LL    E      +SE  +D+    D      
Sbjct: 114 YGGNRHGFLAFSEIHPDYYQIPVSDREKLLALQAEEEALLENSENGSDEDDASDNAETQA 173

Query: 118 HSLEEVAPIANFSQETEEE---------SIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
              E+    ++ + + E E         +   A + V    +  +    +    +F R Y
Sbjct: 174 SDTEQDIEASDTAAQNEGEGSEREERSANKPDAPDYVGGETDTGEEALIQKRIARFLRNY 233

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            IQEVI+ RQ+LLVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN  +G  +SRKIT+  D
Sbjct: 234 RIQEVIRRRQVLLVQVVKEERGNKGAALTTYVSLAGRYCVLMPNALRGGGVSRKITSVAD 293

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           R+ L++I   L +P GM +I+RTAGA R   EI RD EYL+ LWD++RE  L SVAP L+
Sbjct: 294 RRRLRDIVSDLNLPRGMAMIVRTAGAQRPGPEITRDCEYLLHLWDDIREHTLQSVAPALI 353

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP-HPIFF 347
           YEE +L+KRAIRD+Y ++ISEI+V GE G++ A+DFM++LMP +A  VR +     P+F 
Sbjct: 354 YEEASLVKRAIRDVYTREISEIVVDGENGWKAARDFMRMLMPQHAEKVRLWNKENQPLFT 413

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              +E  LD++    V+L S GY++INQTEALV+IDVNSG++T +  IE+TA +TN EAA
Sbjct: 414 HYHVEGHLDAMFSPVVSLRSGGYLVINQTEALVAIDVNSGKATSQRNIEETAFRTNQEAA 473

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           +E+ARQLRLRDLAGLIV+DFIDME +++N  +E++LK++L+ DRAR+Q+G+IS+FGLLEM
Sbjct: 474 DEVARQLRLRDLAGLIVIDFIDMESRRHNSMIERRLKDALRHDRARIQIGSISHFGLLEM 533

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           SRQR+R SV E+    C +C G G +RS  S AL +LR+VEE   +  +  I VH  +D+
Sbjct: 534 SRQRLRPSVAEAAFMPCPHCNGTGMMRSIESSALHVLRAVEEEGARRRSSAITVHVAADI 593

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
             Y+LN KR  + + E R  + +       L      IE+    +           ++  
Sbjct: 594 AFYILNNKRDWLTQIEQRHQMEVLFAADNTLPAPEVRIERRQHARPPRIQPPLPPVENIV 653

Query: 588 PSYDKNIECV--WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
                         + + +      S E  +               +    + +P T+  
Sbjct: 654 ADEVAAATPEIPAAEPSSIQETADTSDEPRRRRRRRRRRRNDQDTNQVSETQTQPDTETP 713

Query: 646 DAGVVSDVSSI 656
           +    + +++ 
Sbjct: 714 ETAETAPIAAP 724


>gi|58040162|ref|YP_192126.1| ribonuclease E [Gluconobacter oxydans 621H]
 gi|58002576|gb|AAW61470.1| Ribonuclease E [Gluconobacter oxydans 621H]
          Length = 892

 Score =  509 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 316/726 (43%), Positives = 434/726 (59%), Gaps = 31/726 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLID +H EETRVVV+  +RVE+ D E+  KKQ+KGNIYLAKV RVEPSLQAAFV+
Sbjct: 33  MTKRMLIDTTHAEETRVVVMDGDRVEDYDVETSTKKQLKGNIYLAKVIRVEPSLQAAFVE 92

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDY+QIP +DR+ L+        +    +DD              
Sbjct: 93  YGGNRHGFLAFSEIHPDYFQIPVADREKLIALQEEEIAERGESSDDAET----------- 141

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E         E  +     A   V    +  +  +      +F R Y IQEVI+ RQ+L
Sbjct: 142 -ETVSEDATDSEDGDNQDRRAPETVGGEHDTGEESASSRRTARFLRNYKIQEVIRRRQVL 200

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN  +G  +SRKIT+  DR+ L+++   L+
Sbjct: 201 LVQVVKEERGNKGAALTTYISLAGRYCVLMPNALRGGGVSRKITSDSDRRRLRDVIAELD 260

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  M +I+RTAGA R   E+ RD EYL++LWD++R  AL+SVAP LVYEE +LIKR IR
Sbjct: 261 LPKSMAMIVRTAGAGRPAAEVTRDCEYLLQLWDDIRSHALSSVAPTLVYEEASLIKRVIR 320

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLH 359
           DLY KDI +I+V GE  ++ A++FM+LLMPS A  V+ +      +F R  +E  LD++ 
Sbjct: 321 DLYSKDIEDILVDGEAAWKSAREFMRLLMPSNANKVKLWQNRGQSLFARYNVEGHLDAMF 380

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
                LPS GY++INQTEALV+IDVNSG+ST +  IE+TAL+TNLEAAEE+ARQLRLRDL
Sbjct: 381 SPTARLPSGGYLVINQTEALVAIDVNSGKSTSQRNIEETALRTNLEAAEEVARQLRLRDL 440

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           AGL+V+DFIDME +++N  VEK+LKE+L+ DRAR+QVG IS+FGLLEMSRQR+R S+ ES
Sbjct: 441 AGLVVIDFIDMESRRHNAQVEKRLKEALRSDRARIQVGHISHFGLLEMSRQRLRPSIAES 500

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
               C +C+G G+IR   S AL +LR+++E   +  +  I VH  SD+ LY+LN KR+ +
Sbjct: 501 VLTPCPHCQGTGFIRGTESSALHVLRAIDEEGARQRSSEIEVHVGSDIALYILNHKRSWL 560

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + E    + +       LA     IE+            +V +  +AP + + IE + +
Sbjct: 561 TDIERHHRMQVIFRTEENLAAADMRIERLQAQT---PAPAQVRAPERAPEHIRTIEIIEE 617

Query: 600 DEALL-----PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR----------PATDH 644
           +  ++     P+  +E +ED+  +   EES G  R+RRRRRR  R            +  
Sbjct: 618 EAPVVVRTETPVVDAEIIEDVATSESEEESNGGRRRRRRRRRGGRRDQNGDVPAAENSQE 677

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
            DA              D   +           ++++                      +
Sbjct: 678 QDAAKAEPREIAAPEAADENGIIPGRRRTRFKRVVKDTEGSEDTAAQPVSEARDVTPAAT 737

Query: 705 SNSSSD 710
           + S++ 
Sbjct: 738 TRSNAP 743


>gi|254439845|ref|ZP_05053339.1| ribonuclease, Rne/Rng family protein [Octadecabacter antarcticus
           307]
 gi|198255291|gb|EDY79605.1| ribonuclease, Rne/Rng family protein [Octadecabacter antarcticus
           307]
          Length = 929

 Score =  509 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 342/808 (42%), Positives = 453/808 (56%), Gaps = 89/808 (11%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+  N+VEE DFE++ ++Q+ GNIYLAKVTRVEPSLQAAF+DYGGN
Sbjct: 1   MLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFIDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT-------------------------- 98
           RHGFL F EIHPDYYQIP +DR AL+ E                                
Sbjct: 61  RHGFLAFNEIHPDYYQIPVADRLALIAEEKAYAESQKAEAEAEAEKPKRTRRRRKPRAAE 120

Query: 99  ----------DSEAVADDVTHGDVTIPNDHSLEEVAPI-----ANFSQETEEESI----- 138
                     D  A  +D T GD+       L +         A+   +T E+S      
Sbjct: 121 VDGQDAVATADPVATTEDETSGDIAGMETIDLSDEGSSPMEIVADTPVDTPEQSAGDSDD 180

Query: 139 --------------------ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
                                + ++ + S  ++        V K   ++Y IQEVIK RQ
Sbjct: 181 VADNDDRDGDDTDGDGGSDASAKDDSIESIADEDDYEDVRPVRKPRPKRYKIQEVIKVRQ 240

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
           ILL+Q+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKIT   DRK LK IA  
Sbjct: 241 ILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKAIAND 300

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
           + VP G G+I+RTAG+ RTK EIKRD+EYL RLW+ +REL L S AP  +YEEGNLIKR+
Sbjct: 301 MSVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLRSSAPAQIYEEGNLIKRS 360

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           IRDLY KDI E+IV GE GYR AKDFMK++MPS+A+ V  Y++  P+F R  IE  L  +
Sbjct: 361 IRDLYSKDIDEVIVEGEGGYRTAKDFMKMIMPSHAKNVTNYKEQMPLFARHQIESYLSGM 420

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
               V LPS GY++I+ TEALV++DVNSGR+T+E  IE TA +TNLEAA E+ARQLRLRD
Sbjct: 421 FNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRD 480

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           LAGLIV+DFIDM+E+KNN SVEK +K+ LK DRAR+QVG IS FGL+EMSRQR+R  +LE
Sbjct: 481 LAGLIVIDFIDMDERKNNASVEKLMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLE 540

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           STT+ C++C G G +RS  +VAL ILR +EE  ++  +  +++     +  +L+NQKR  
Sbjct: 541 STTQPCSHCHGTGLLRSDDNVALGILRQLEEEGVRGRSKEVLIKAPIVIANFLMNQKREH 600

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
           I + E R+G+S+ +     L    F +EK      +V     V   S   +    ++   
Sbjct: 601 IAQIETRYGLSVRIECDPHLVSPDFVLEKFKTASRVVAEVEIVSVISSDTAVMAEVDDAP 660

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
            +E  + +  +   ++   +   E+  G    ++RRRRRRR      +     D ++  N
Sbjct: 661 MEEVEIEVAATVETKNEGASTAPEQQEGEAPTKKRRRRRRRRRGGGDNVDANGDTTAQNN 720

Query: 659 VIDDSF-----------------------DMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
               +                             P      +  +               
Sbjct: 721 GEAAAAVPSDTQTAVASTEQGDTPAADAVAAEDAPKPKRTRSRRKKAEALVQSAEVTESV 780

Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +     +  + +D   K  R   RRK
Sbjct: 781 DAAVVGAVTDEAVTDDAPKPKRTRARRK 808



 Score = 51.1 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A+V           AP   +      + + ++    +   E       +       + 
Sbjct: 781 DAAVVGAVTDEAVTDDAPKPKRTRARRKKADDVVSGDAAAVQETAPVAEAAPSDAPAEKP 840

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           +R  R R++PA        V++  +    + ++    +E   +     +           
Sbjct: 841 KRAPRNRKKPAAKAEVEVAVAE--TPAETVVEAPTETLETVAVDKPKRVRRTTSKPKVEP 898

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
           + +  P   P  E+    +D   KK  WW 
Sbjct: 899 EAAPTPEVAPVTEAPV--ADDAPKKRGWWS 926



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 4/155 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+G    A            +  S  K  E + Q   +     +  +  + D  V++++ 
Sbjct: 739 EQGDTPAADAVAAEDAPKPKRTRSRRKKAEALVQSAEVTESVDAAVVGAVTDEAVTDDA- 797

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + +R R RR++              ++       S     +P      N  +  A  
Sbjct: 798 --PKPKRTRARRKKADDVVSGDAAAVQETAPVAEAAPSDAPAEKPKR-APRNRKKPAAKA 854

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
             E      P  +  E  +    +  + K  R  +
Sbjct: 855 EVEVAVAETPAETVVEAPTETLETVAVDKPKRVRR 889


>gi|254451380|ref|ZP_05064817.1| ribonuclease E [Octadecabacter antarcticus 238]
 gi|198265786|gb|EDY90056.1| ribonuclease E [Octadecabacter antarcticus 238]
          Length = 954

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 335/789 (42%), Positives = 445/789 (56%), Gaps = 79/789 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFE++ ++Q+ GNIYLAKVTRVEPSLQAAF+D
Sbjct: 14  MAKKMLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFID 73

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT---------------------- 98
           YGGNRHGFL F EIHPDYYQIP +DR AL+ E                            
Sbjct: 74  YGGNRHGFLAFNEIHPDYYQIPVADRLALIAEEKAYAESQKAEAEAEKPKRSRTRTRRKP 133

Query: 99  --------------DSEAVADDVTHGDVTIPNDHSLEEV--------------------- 123
                         D    +++ T GD+       L +                      
Sbjct: 134 KAAEVDGQDAVATADPVETSEEETSGDIAGMETIDLSDDETGEGSSPMETVADTPVDTPE 193

Query: 124 ----------APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173
                         +             +  + S  ++        V K   ++Y IQEV
Sbjct: 194 QGSGDGDDVADNETDGDDSDGGTEATDKDETIESVADEDDHEDVRPVRKPRPKRYKIQEV 253

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
           IK RQILL+Q+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKIT   DRK LK
Sbjct: 254 IKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLK 313

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
            IA  + VP G G+I+RTAG+ RTK EIKRD+EYL RLW+ +REL L S AP  +YEEGN
Sbjct: 314 AIANEMAVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLRSSAPAQIYEEGN 373

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           LIKR+IRDLY K+I E+IV GE GYR AKDFMK++MPS+A+ V  Y++  P+F R  IE 
Sbjct: 374 LIKRSIRDLYSKEIDEVIVEGEGGYRTAKDFMKMIMPSHAKNVINYKEQMPLFARHQIES 433

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            L  +    V LPS GY++I+ TEALV++DVNSGR+T+E  IE TA +TNLEAA E+ARQ
Sbjct: 434 YLSGMFNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQ 493

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLRDLAGLIV+DFIDM+E+KNN SVEK +K+ LK DRAR+QVG IS FGL+EMSRQR+R
Sbjct: 494 LRLRDLAGLIVIDFIDMDERKNNASVEKLMKDKLKTDRARIQVGRISGFGLMEMSRQRLR 553

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
             +LESTT+ C++C G G +RS ++VAL ILR +EE  +   +  +++     +  +L N
Sbjct: 554 PGMLESTTQPCSHCHGTGLLRSDANVALGILRQLEEEGVHGRSKEVLIKAPIVISNFLTN 613

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           QKR  I + EAR+G+S+ +     L    F +EK      +V     V   S   +    
Sbjct: 614 QKREHIAQIEARYGLSVRIECDPHLVSPDFVLEKFKTASRVVAEVELVSVISSETAVMAE 673

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
           ++    +EA + +  S   +    ++  E   G               T           
Sbjct: 674 VDDAPMEEAEIEVTASVEAKTEGHSVAPESQDGDAP------------TKKRRRRRRRRR 721

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            S      ++   +   +D     ++++         D    PV    +++      P  
Sbjct: 722 GSGGGENAEANGEHAAHNDGDAAVVVKSDTLADVTPSDQGETPVVDAVVDAVAVEDAPKP 781

Query: 714 KKTRWWKRR 722
           K+TR  +++
Sbjct: 782 KRTRTRRKK 790



 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++G               D+  P           D  +     +E +E       S E+ 
Sbjct: 759 DQGETPVVDAVVDAVAVEDAPKPK-RTRTRRKKADAPVESAEVTEIVEAALVEAASAEAA 817

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                + +R R RR   D  D       ++             +P            A  
Sbjct: 818 AEDAPKPKRTRSRRKKAD--DVPSDDAPAAPVAEAAPVGAPAAKPKRAPRSRKKPAAAVD 875

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            T   +    P++    E+         K+ R
Sbjct: 876 DTAVAETPAEPIAAFPAETPEPVVADKPKRVR 907


>gi|162148126|ref|YP_001602587.1| ribonuclease E [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786703|emb|CAP56286.1| putative ribonuclease E [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1036

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 315/700 (45%), Positives = 412/700 (58%), Gaps = 6/700 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLID +H EETRVVV+  NR+E+ D E+  KKQ+KGNIYLAKV RVEPSLQAAFV+
Sbjct: 30  MNKRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVE 89

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ LL          EA  D+    D         
Sbjct: 90  YGGNRHGFLAFSEIHPDYYQIPVADREKLLALQE-----EEARIDEAQSQDDDAEAPAEP 144

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A+   +  +         V    +       +    +F R Y IQEVI+ RQIL
Sbjct: 145 AAADAQADGDAQAADGEAEPLPETVGGETDTGDESLVQRRIARFLRNYKIQEVIRRRQIL 204

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G  +SRKIT+  DR+ LK++   L+
Sbjct: 205 LVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRKITSVADRRRLKDVIAELQ 264

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P GM +I+RTAGA R + EI RD EYL+RLWD++R+  ++SVAP L+YEE +LIKRAIR
Sbjct: 265 IPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHSVAPALIYEEASLIKRAIR 324

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLH 359
           D+Y +D+ EI+V GE G++ A++FM++LMP  A ++    +   P+F    +E  LDS+ 
Sbjct: 325 DIYTRDVGEILVDGEAGWKSAREFMRMLMPQSAPKVKCWRDGGQPLFSHFNVEGLLDSML 384

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++INQ EALV+IDVNSGR+TRE  IE+TAL+TNLEAAEE+ARQLRLRDL
Sbjct: 385 SPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALRTNLEAAEEVARQLRLRDL 444

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           AGLIV+DFIDME +K+N  VE++LK++L+ DRAR+QVGAIS+FGLLEMSRQR+R S+ ES
Sbjct: 445 AGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISHFGLLEMSRQRLRPSIAES 504

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T   C +C+G G IR   S AL +LR+VEE   +  A  I VH  +++ LY+LN KRA +
Sbjct: 505 TFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRAAEITVHVAAEIALYILNNKRAWL 564

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E E R  + +       L      IE+  P                     +  E    
Sbjct: 565 SEIEKRHKMHVVFSPDASLLPPQLRIERVRPQTERFEPVAPPVLAEPTDILAEETEAAAP 624

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
               +PI      +       +  ST    +    RRRRR                    
Sbjct: 625 VVREIPIQAEAPADAAVAAEAAPVSTEEGEEGTDHRRRRRRRRRRRGGERAEGAPQAVPA 684

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                +   E +   N    E       E+     P    
Sbjct: 685 EAADAEQADEDAGHGNEGEEETAPAIHAESVAEPAPAREE 724


>gi|221638542|ref|YP_002524804.1| RNAse E [Rhodobacter sphaeroides KD131]
 gi|221159323|gb|ACM00303.1| RNAse E [Rhodobacter sphaeroides KD131]
          Length = 890

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 343/764 (44%), Positives = 444/764 (58%), Gaps = 46/764 (6%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+  N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD------------------- 105
           RHGFL F EIHPDYYQIP +DR+ALL+E        +                       
Sbjct: 61  RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA 120

Query: 106 ---------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------ISANN 143
                          + T  D     D S    A          +E            ++
Sbjct: 121 VQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEASDADEKPYRAMDHASDGDD 180

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
           ++ S  ++          K   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLA
Sbjct: 181 EIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLA 240

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           GRY VLMPNT++G  ISRKIT   DRK LKEIA  LEVP G G+I+RTAGA RTK EI+R
Sbjct: 241 GRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRR 300

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           D+EYL+RLW+ +R+L L SVAP  +YEEG+LIKR IRDL+ ++I E++V GE GYR AKD
Sbjct: 301 DYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKD 360

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           FM+++MP++AR V +Y++P P+F R  +E  L  +    V L S GY++I  TEALV+ID
Sbjct: 361 FMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAID 420

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK+L
Sbjct: 421 VNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRL 480

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           K+ LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+AL +
Sbjct: 481 KDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQV 540

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +EE   +  +  +++     VV +L+N KR  I   EAR+G+++ V     L+   +
Sbjct: 541 LRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIALIEARYGMAVRVEADPSLSSPDY 600

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-----DEALLPIPKSESLEDIQDN 618
            IEK      +V    KV S S         E          E +    +     +   +
Sbjct: 601 VIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVAEAAEAAPS 660

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
               +     R+RRR        +D  + G   D S             +E +       
Sbjct: 661 EGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAAVPELA 720

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            E              P  + P    +        K+TR  K +
Sbjct: 721 PEAVVSAPEPAAVEPEPAPAEPVAAPAAEEPAAPRKRTRTRKPK 764


>gi|114326947|ref|YP_744104.1| ribonuclease E [Granulibacter bethesdensis CGDNIH1]
 gi|114315121|gb|ABI61181.1| ribonuclease E [Granulibacter bethesdensis CGDNIH1]
          Length = 949

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 324/766 (42%), Positives = 445/766 (58%), Gaps = 49/766 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KMLIDASH EETRVVV+  NR+E+ D E+  +KQIKGNIYLAKV RVEPSLQAAFV+
Sbjct: 49  MTKKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVE 108

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI------------------------- 95
           YGGNRHGFL F EIHPDYYQIP +DRQ LL                              
Sbjct: 109 YGGNRHGFLAFSEIHPDYYQIPVADRQRLLAMQEEEAREEEEAEEAEFSAAEARRSASRP 168

Query: 96  ---AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
              A+   +A ++     D          +    A+FS E  +E  + A+     + E+ 
Sbjct: 169 LNNAREVIQADSEQPEASDPQEDGADHGVQDESAADFSGEAGDEGSVPASAGEGDDQEES 228

Query: 153 K--------GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
           +            E    +F R Y IQEVIK RQILL+Q+VKEERGNKGAA++TY+SLAG
Sbjct: 229 RQASRPARQKEDRERRSPRFLRNYKIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAG 288

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RY VLMPN+ +G  +SRKIT+  DR+ LK+I   LE+P GMG+I+RTAG +R K EI RD
Sbjct: 289 RYCVLMPNSPRGGGVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRD 348

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            EYL+RLWD++R++ L S AP L++EE +LIKRAIRD+Y   I E++V GE+G+R A+D 
Sbjct: 349 CEYLLRLWDDIRDITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDI 408

Query: 325 MKLLMPSYARIVRQYEDP-----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           M++LMPS+AR V  +         P+F    +E QLD++    V+L S GY++INQ EAL
Sbjct: 409 MRMLMPSHARKVICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEAL 468

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSGRST+E  IE+TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDME +K+N  V
Sbjct: 469 VAIDVNSGRSTKERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMV 528

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           E++LKE+LK DRAR+QVG IS+FGLLEMSRQR+R S+ E++   C +C G G +R+    
Sbjct: 529 ERRLKEALKNDRARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGA 588

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           ++ +LR++EE   +     I+VH  +DV  Y+LN +R  +   E+RFG+ +      + +
Sbjct: 589 SVHVLRAIEEEGARRRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLFSADTQFS 648

Query: 560 DKLFYIE--KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPIPKSESLE 613
                IE  +   ++ +V T     +D Q        +     +           +  + 
Sbjct: 649 GSQLRIEKIRARAMEDVVRTPLIGVADPQPSVAGDLYDFADASDGFATFEAAPVAALPVA 708

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD--MYMEPS 671
              + + + E      +         P  D  +           N  +D  +  M     
Sbjct: 709 VQAEPVGTAEEGNNGGRLPSAEGDSEPGPDDGERRRRRRRRRRGNRRNDGAENGMDARSE 768

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              N N +E G      + + S  PV T E+  +  +S     +T+
Sbjct: 769 QDENGNPVEEGEGVRHGDANTSALPVETTELTVAGVASKETSAETQ 814


>gi|255263043|ref|ZP_05342385.1| ribonuclease E [Thalassiobium sp. R2A62]
 gi|255105378|gb|EET48052.1| ribonuclease E [Thalassiobium sp. R2A62]
          Length = 887

 Score =  504 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 332/797 (41%), Positives = 444/797 (55%), Gaps = 77/797 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFES  K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESASKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIP----- 115
           YGGNRHGFL F EIHPDYYQIP +DR+AL+ E         A  +   +           
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALIAEERAYAEQQRADDEAKANAPKRRRSRRKP 120

Query: 116 --NDHSLEEVAPIANFSQETEE-------------------------------------- 135
              + + ++    A    ET E                                      
Sbjct: 121 KAEEVASDDAIVTAEVEGETSETAVEDALLIDETPTSNEPEGMETIDLESGSDAPIVDGD 180

Query: 136 ---------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186
                        + ++ + S  ++        V K   ++Y IQEV+K RQILLVQ+VK
Sbjct: 181 DDEDDAPTMSDATAKDDGIESVADEDDSEDVRPVRKPRPKRYKIQEVVKVRQILLVQVVK 240

Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246
           EERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN VDRK LKEIA  ++VP G G
Sbjct: 241 EERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIANEIDVPDGAG 300

Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
           +I+RTAGA RTK EIKRD+EYL+RLW+ +REL L S+AP  +YEEGNLIKR+IRDLY ++
Sbjct: 301 LIVRTAGAKRTKTEIKRDYEYLLRLWEQIRELTLKSIAPSKIYEEGNLIKRSIRDLYNRE 360

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
           I E+ V G  GYR AKDFMK++MPS+A+ V+ Y+DP P+F R  +E  L  +    V LP
Sbjct: 361 IDEVFVEGADGYRVAKDFMKMIMPSHAKNVKHYQDPLPLFARYQVESYLAGMFNPTVQLP 420

Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
           S GY++I  TEALV+IDVNSGR+T+E  IE TAL+TNLEA++E+ARQLRLRDLAGLIV+D
Sbjct: 421 SGGYIVIGVTEALVAIDVNSGRATKEGSIEQTALKTNLEASDEVARQLRLRDLAGLIVID 480

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           +IDM+E++NN +VEK+LK+ LK DRAR+QVG IS FGLLEMSRQR+R  ++E+TT+ C +
Sbjct: 481 YIDMDERRNNTAVEKRLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCVH 540

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G G +RS  ++AL ILR +EE  ++  +  ++V     +  +L+N KR  I + E R+
Sbjct: 541 CHGTGLLRSDDNMALGILRQLEEEGVRGKSKEVLVKAPVPIANFLMNNKREHIGQIEGRY 600

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           G+S+ +     +    F IEK      +V           A   D   E    +E     
Sbjct: 601 GLSVRIEGDPFMISPDFAIEKFKTATRVVAPVDHAVISGSAIIMDDVDEDQASEETEAEA 660

Query: 607 PKS------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
            ++      E     +         G   +    +   +       +   +   + +   
Sbjct: 661 AEAQQNAEGEDKPKRRRRRRRRRRGGGNGENAEGQGENQSEGQDAGSEEAAHDGAAETAS 720

Query: 661 DDSFDMYMEPSDITNHNLLEN-----------------GAHGFTENYDVSIPPVSTPEME 703
           DD+          +   + E+                      T +     P        
Sbjct: 721 DDALVEAAPTEAPSEEAVKEDKPKRKRTRSRKKAEPEAAVEASTADTPTEEPAQEAKPAA 780

Query: 704 SSNSSSDPIVKKTRWWK 720
                ++   K  R  +
Sbjct: 781 EDAPKAEEKPKPKRTRR 797



 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 38/166 (22%), Gaps = 4/166 (2%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A     +E             +     +     K  E     EA      +E        
Sbjct: 719 ASDDALVEAAPTEAPSEEAVKEDKPKRKRTRSRKKAEPEAAVEASTADTPTEEPAQEAKP 778

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              +      + + +R RR++       A +   V +                +      
Sbjct: 779 AAEDAPKAEEKPKPKRTRRKKAEPKAEAAALADAVVAEAAPEAAPEPKAAPEPEAAPEPE 838

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSS----DPIVKKTRWWK 720
                        VS    + P +E+  +      D   KK  WW 
Sbjct: 839 AAPEPKPKKTRTRVSKAKPAEPVVEAPAAEEPASDDGKPKKKGWWS 884


>gi|258543056|ref|YP_003188489.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-01]
 gi|256634134|dbj|BAI00110.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-01]
 gi|256637194|dbj|BAI03163.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-03]
 gi|256640246|dbj|BAI06208.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-07]
 gi|256643303|dbj|BAI09258.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-22]
 gi|256646358|dbj|BAI12306.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-26]
 gi|256649411|dbj|BAI15352.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-32]
 gi|256652397|dbj|BAI18331.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655455|dbj|BAI21382.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-12]
          Length = 997

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 294/684 (42%), Positives = 410/684 (59%), Gaps = 15/684 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +MLIDA+H EETRVVV+  NR+E+ D ES  KKQ+KGNIYLA+V RVEPSLQAAFV+
Sbjct: 54  MSKRMLIDATHAEETRVVVMDGNRLEDYDVESAAKKQLKGNIYLARVVRVEPSLQAAFVE 113

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP SDR+ LL      +   E   +     D +   +   
Sbjct: 114 YGGNRHGFLAFSEIHPDYYQIPVSDREKLLALQAEEEALLENAENGADEDDASDNAEAQA 173

Query: 121 EEVA------------PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
            +                    +E    +   A + V    +  +    +    +F R Y
Sbjct: 174 SDTEQDTEASDTSAQSEDEGSEREERSANKQDAPDYVGGETDTGEEALIQKRIARFLRNY 233

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            IQEVI+ RQ+LLVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN  +G  +SRKIT+  D
Sbjct: 234 RIQEVIRRRQVLLVQVVKEERGNKGAALTTYVSLAGRYCVLMPNALRGGGVSRKITSVAD 293

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           R+ L++I   L +P GM +I+RTAGA R   EI RD EYL+ LWD++RE  L SVAP L+
Sbjct: 294 RRRLRDIVSDLNLPRGMAMIVRTAGAQRPGPEITRDCEYLLHLWDDIREHTLQSVAPALI 353

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP-HPIFF 347
           YEE +L+KRAIRD+Y ++ISEI+V GE G++ A+DFM++LMP +A  VR +     P+F 
Sbjct: 354 YEEASLVKRAIRDVYTREISEIVVDGENGWKAARDFMRMLMPQHAEKVRLWNKENQPLFT 413

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              +E  LD++    V+L S GY++INQTEALV+IDVNSG++T +  IE+TA +TN EAA
Sbjct: 414 HYHVEGHLDAMFSPVVSLRSGGYLVINQTEALVAIDVNSGKATSQRNIEETAFRTNQEAA 473

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           +E+ARQLRLRDLAGLIV+DFIDME +++N  +E++LK++L+ DRAR+Q+G+IS+FGLLEM
Sbjct: 474 DEVARQLRLRDLAGLIVIDFIDMESRRHNSMIERRLKDALRHDRARIQIGSISHFGLLEM 533

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           SRQR+R SV E+    C +C G G +RS  S AL +LR+VEE   +  +  I VH  +D+
Sbjct: 534 SRQRLRPSVAEAAFMPCPHCNGTGMMRSIESSALHVLRAVEEEGARRRSSAITVHVAADI 593

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
             Y+LN KR  + + E R  + +       L      IE+    +           ++  
Sbjct: 594 AFYILNNKRDWLTQIEQRHQMEVLFAADNTLPAPEVRIERRQHARPPRIQPPLPPVENIV 653

Query: 588 PSYDKNIECV--WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
                         +   +      S E  +               +    + +      
Sbjct: 654 ADEVIAAAPEIPATEPTAIQETVDNSDEPRRRRRRRRRRRSDQDTNQTPATQTQSDAIAP 713

Query: 646 DAGVVSDVSSIQNVIDDSFDMYME 669
           +A   + +++ +N ++   +   E
Sbjct: 714 EADEAAPIAASENTVEPVAEADAE 737


>gi|209542767|ref|YP_002274996.1| Rne/Rng family ribonuclease [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530444|gb|ACI50381.1| ribonuclease, Rne/Rng family [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 1009

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 305/631 (48%), Positives = 399/631 (63%), Gaps = 6/631 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLID +H EETRVVV+  NR+E+ D E+  KKQ+KGNIYLAKV RVEPSLQAAFV+
Sbjct: 1   MNKRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ LL          EA  D+    D         
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREKLLALQE-----EEARIDEAQSQDDDAEAPAEP 115

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A+   +  +         V    +       +    +F R Y IQEVI+ RQIL
Sbjct: 116 AAADAQADGDAQAADGEAEPLPETVGGETDTGDESLVQRRIARFLRNYKIQEVIRRRQIL 175

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G  +SRKIT+  DR+ LK++   L+
Sbjct: 176 LVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRKITSVADRRRLKDVIAELQ 235

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P GM +I+RTAGA R + EI RD EYL+RLWD++R+  ++SVAP L+YEE +LIKRAIR
Sbjct: 236 IPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHSVAPALIYEEASLIKRAIR 295

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLH 359
           D+Y +D+ EI+V GE G++ A++FM++LMP  A ++    +   P+F    +E  LDS+ 
Sbjct: 296 DIYTRDVGEILVDGEAGWKSAREFMRMLMPQSAPKVKCWRDGGQPLFSHFNVEGLLDSML 355

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++INQ EALV+IDVNSGR+TRE  IE+TAL+TNLEAAEE+ARQLRLRDL
Sbjct: 356 SPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALRTNLEAAEEVARQLRLRDL 415

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           AGLIV+DFIDME +K+N  VE++LK++L+ DRAR+QVGAIS+FGLLEMSRQR+R S+ ES
Sbjct: 416 AGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISHFGLLEMSRQRLRPSIAES 475

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T   C +C+G G IR   S AL +LR+VEE   +  A  I VH  +++ LY+LN KRA +
Sbjct: 476 TFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRAAEITVHVAAEIALYILNNKRAWL 535

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E E R  + +       L      IE+  P                     +  E    
Sbjct: 536 SEIEKRHKMHVVFSPDASLLPPQLRIERVRPQTERFEPVAPPVLAEPTDILAEETEAAAP 595

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
               +PI      +       +  ST    +
Sbjct: 596 VVREIPIQAEAPADAAVAAEAAPVSTEEGEE 626


>gi|110634063|ref|YP_674271.1| ribonuclease E [Mesorhizobium sp. BNC1]
 gi|110285047|gb|ABG63106.1| RNAse E [Chelativorans sp. BNC1]
          Length = 868

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 377/733 (51%), Positives = 479/733 (65%), Gaps = 25/733 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDASH EETRVVVLR NR+EE DFES+ KKQ++GNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MPNKMLIDASHPEETRVVVLRGNRIEEFDFESQDKKQLRGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDS-------------------E 101
           YGGNRHGFL F EIHPDYYQIP +DRQALL+        +                   +
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALLEAEAEEARAADEAEEGEAQAGRGRKRRRRD 120

Query: 102 AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161
           A  D+V      +    ++ +       + +       + +++V +   +      ++  
Sbjct: 121 AKTDEVVSEGKDVAQPEAVRDDTVSEPLAADGNGSDEANGSDEVDTVGAEDALDEAQNRR 180

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
           +  +R Y IQEVIK RQI+LVQ+VKEERG+KGAA+TTYLSLAGRYSVLMPNT++G  ISR
Sbjct: 181 RPVRRNYKIQEVIKRRQIMLVQVVKEERGSKGAALTTYLSLAGRYSVLMPNTARGGGISR 240

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KITN  DRK LKE+ +GL+VP GMGVILRTAGA+RTK EIKRD+EYLMRLW+ VR L L 
Sbjct: 241 KITNLQDRKRLKEVVKGLDVPEGMGVILRTAGANRTKAEIKRDYEYLMRLWERVRTLTLE 300

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
           S+AP LVYEEG+LIKRA+RDLY KDI EI+V+GE GYREAKDFM++LMPS+A+ V+ Y D
Sbjct: 301 SIAPALVYEEGSLIKRAVRDLYNKDIDEILVAGEDGYREAKDFMRMLMPSHAKAVQPYRD 360

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             PIF R+GIE QLD + Q +VTL S GY+IINQTEALV+IDVNSGRST+EH IEDTALQ
Sbjct: 361 SVPIFARNGIEAQLDKMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEDTALQ 420

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAAEEI+RQLRLRDLAGLIV+DFIDMEE +NNR+VEK+LKE LK DRAR+QVG IS+
Sbjct: 421 TNLEAAEEISRQLRLRDLAGLIVIDFIDMEENRNNRAVEKRLKECLKSDRARIQVGRISH 480

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGLLEMSRQRIRSSVLEST + C +C G G++RS SSVAL ++R++EEYLL+   H+I V
Sbjct: 481 FGLLEMSRQRIRSSVLESTMQPCPHCGGTGHVRSDSSVALLVVRAIEEYLLKDGRHDITV 540

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
            T +   LYLLN KRAT+VE E+RFGV I +    EL  + + I KG P   +  +   V
Sbjct: 541 RTPTSTALYLLNHKRATLVEMESRFGVEITIETDEELGTQHYAIVKGQPSTRVPASRAVV 600

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR---- 637
            +  +     +    V + E L     +                    K R   +     
Sbjct: 601 QAVPEVEDEAEEETYVEETEELEEKQTAAEEPGGPGRKRRRRRRRRGGKDRAAEQAAPHS 660

Query: 638 --RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
                 ++       +D+++ +   + +     +       +  + G      + + +  
Sbjct: 661 AVTEEISEPAAETGEADLTAAETEAEAADVEAGDGGPRKKRHRGKRGGKRNRRDEEAAPE 720

Query: 696 PVSTPEMESSNSS 708
              T + E     
Sbjct: 721 DAVTAQSEEPAGE 733



 Score = 45.0 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 43/156 (27%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +             +     +         +      SE+     + +    +  
Sbjct: 710 RNRRDEEAAPEDAVTAQSEEPAGEIQAEAASEAVSSEAAAATSEAAAAEAEPVAEVSAEE 769

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           V+ + +  ++ RR      DA             D+         +    +  E+     
Sbjct: 770 VVVEEKPAKKPRRKTRAKKDAAADEIAQPAPVAQDEEPAPAAPTVEALVEDKPEDKPSKP 829

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +     +      P + S+  S +   +KT WW+R+
Sbjct: 830 SRRTAANTSEKPKPVVTSTGESGEAPARKTGWWQRK 865


>gi|315121914|ref|YP_004062403.1| ribonuclease E [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495316|gb|ADR51915.1| ribonuclease E [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 743

 Score =  499 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 507/743 (68%), Positives = 569/743 (76%), Gaps = 20/743 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASHVEETRVVVLRDNRVE+LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDASHVEETRVVVLRDNRVEDLDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK SN+        +D V      + +D  +
Sbjct: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKVSNVQTDSGVVDSDVVITDSGVVDSDIVI 120

Query: 121 EEVAPIANFSQ---ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177
            +             T     I ++NDVV + E+V+  S E+V KK +RQYCIQEVIKNR
Sbjct: 121 NDDVNSVELDDVASTTNLSHEICSSNDVVFDNENVEVDSSENVSKKLRRQYCIQEVIKNR 180

Query: 178 QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIAR 237
           QILLVQ+VKEERGNKGAAVTTYLSLAGRYSVLMPNT KGE ISRK+TNPVDR NLKEIAR
Sbjct: 181 QILLVQVVKEERGNKGAAVTTYLSLAGRYSVLMPNTPKGEAISRKVTNPVDRNNLKEIAR 240

Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
            LEVP GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE ALNSVAPHLVYEEG+LIKR
Sbjct: 241 TLEVPPGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREFALNSVAPHLVYEEGSLIKR 300

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
           AIRDLY KDI+EIIVSGEKGYREAKDFMKLLMPSYA+IVRQY D HPIF  SGIE QLD 
Sbjct: 301 AIRDLYSKDITEIIVSGEKGYREAKDFMKLLMPSYAKIVRQYNDVHPIFSHSGIEAQLDC 360

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           LH TEVTLPSRGY+IINQTEALV+IDVNSGRSTREH IE TA QTNLEA+EEIARQLRLR
Sbjct: 361 LHHTEVTLPSRGYIIINQTEALVAIDVNSGRSTREHSIESTAFQTNLEASEEIARQLRLR 420

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DLAGLIVVDFIDMEEK+NNR+VEKKLK+SLKKDRARVQVG+IS+FGLLEMSRQRIRSSVL
Sbjct: 421 DLAGLIVVDFIDMEEKRNNRAVEKKLKDSLKKDRARVQVGSISHFGLLEMSRQRIRSSVL 480

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           ESTTK+C+ CKG+GY+RSQSS+ LSILRS+EEYLL+YT HNIIVHTH D VLYLLNQKRA
Sbjct: 481 ESTTKICSTCKGSGYVRSQSSITLSILRSIEEYLLEYTTHNIIVHTHPDFVLYLLNQKRA 540

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
           TIVEYE+RFGVSINVVIG+ LADKLF IEKGSPVQ  V   H V         +KN+EC 
Sbjct: 541 TIVEYESRFGVSINVVIGLSLADKLFNIEKGSPVQCPVKIEHIVDFSHIQMEDNKNVECS 600

Query: 598 WQDE----ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR-------------RRP 640
            +D+     +  + KS + +D  D+ + +       +                    RRP
Sbjct: 601 QKDQNVLLPISNLEKSGNTQDKIDDSIEQSINSRDTEGALDESSGIVVRKRRRRRRRRRP 660

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             +H D      + SI +V+DDS  +    S    +  L +            IP     
Sbjct: 661 VIEHSDVVASDVLGSITHVVDDSLAIQDIESAHIQNQNLASDDSPELIAESGFIPNPLPI 720

Query: 701 EMESSNSSSDPIVKKTRWWKRRK 723
             E+ N++S+P+V+K  WW+RRK
Sbjct: 721 TSETDNNTSEPVVRKIGWWRRRK 743


>gi|126735805|ref|ZP_01751550.1| ribonuclease E, putative [Roseobacter sp. CCS2]
 gi|126714992|gb|EBA11858.1| ribonuclease E, putative [Roseobacter sp. CCS2]
          Length = 879

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 334/780 (42%), Positives = 452/780 (57%), Gaps = 58/780 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KMLIDA+H EETRVVV+  N+VEE DFES+ K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MPKKMLIDATHAEETRVVVVDGNKVEEFDFESQFKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN-------------------------I 95
           YGGNRHGFL F EIHPDYYQIP +DR+AL+ E                            
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALIAEEKAYAESLKAEAEAEEEKPKPKRRRRSK 120

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE------------------- 136
           A+       D V  G+V  P + +  ++A +     +  EE                   
Sbjct: 121 AKAAEVEGDDAVVTGEVETPEEETSGDIAGMETIDLDDSEEGSSPMELVAETPVETPAAG 180

Query: 137 -------------SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                           S +  + S  E+        V K   ++Y IQEVIK RQILL+Q
Sbjct: 181 EDEDDDEDEQPKADPKSKDETIESVAEEDDTDEVRPVRKPRPKRYKIQEVIKVRQILLIQ 240

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LKEIA  + VP 
Sbjct: 241 VVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANSMTVPD 300

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           G G+I+RTAG+ RTK EIKRD+EYL R+W+ +REL L S AP  +YEEG+LIKR+IRDLY
Sbjct: 301 GAGLIIRTAGSQRTKAEIKRDYEYLQRMWEQIRELTLKSTAPAKIYEEGDLIKRSIRDLY 360

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            K+I E+IV+GE GYR AKDFMK++MPS+A+ V+ Y +  P++ R  +E  L+ +    V
Sbjct: 361 SKEIDEVIVAGEAGYRTAKDFMKMIMPSHAKNVKFYTEQLPLYARYQVEGYLNGMFNPTV 420

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            LPS GY++I  TEALV+IDVNSGR+T+E  IE TA +TNLEAA+E+ARQLRLRDLAGLI
Sbjct: 421 QLPSGGYIVIGITEALVAIDVNSGRATKEGSIEQTATKTNLEAADEVARQLRLRDLAGLI 480

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDM+E++NN +VEK+ K+ LK DRAR+QVG IS FGL+EMSRQR+R  +LE+TT++
Sbjct: 481 VIDFIDMDERRNNAAVEKRFKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEATTQM 540

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C++C G G +RS  +VALSILR++EE  ++  +  +++     +  +L+N KR  I + E
Sbjct: 541 CSHCHGTGLLRSDDNVALSILRALEEEGVRGRSKEVLIKAPISIANFLMNGKREHIADIE 600

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           AR+G+S+ +     +    + IEK      +V       S +     D++       +A 
Sbjct: 601 ARYGMSVRIECDPTMVSPDYAIEKFKTATRVVPDAAPFVSSAVMMDDDEDDNAGIIVDAD 660

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
           +    + + E + D     +     R+RRR          +       +           
Sbjct: 661 VAEETNTNAETV-DGEDRPKRKRRRRRRRRGGGGGNADNQNGQNQNGDNAEGDAEAAPAE 719

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                    +             T        P +   +E+        V + +   +++
Sbjct: 720 AATDTPADKVAEDAPAPEAKPKRTRTRRKKAEPAAEDAVETPAEKPAEEVAEDKPAPKKR 779



 Score = 51.5 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 11/155 (7%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
           T       ++     +      +       P +E   +      +EE        ++R R
Sbjct: 722 TDTPADKVAEDAPAPEAKPKRTRTRRKKAEPAAEDAVETPAEKPAEEVAEDKPAPKKRTR 781

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE-------- 688
           R++          V   +       D+ +   +P   +        A             
Sbjct: 782 RKKAEPKEEAVAEVDAKTPAAEAEPDAIEEKPKPKRRSRAKPKAEAAPVEAAEEVVAETP 841

Query: 689 ---NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                +    P   PE ++  + ++   K+  WW 
Sbjct: 842 PEPKAEPKAEPKPAPEPKAETAPAEDKPKRKGWWS 876


>gi|119385690|ref|YP_916745.1| ribonuclease [Paracoccus denitrificans PD1222]
 gi|119376285|gb|ABL71049.1| RNAse E [Paracoccus denitrificans PD1222]
          Length = 869

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 343/754 (45%), Positives = 445/754 (59%), Gaps = 40/754 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLIDA+H EETRVVV+   +VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MSKKMLIDATHSEETRVVVVDGTKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALL---------------KESNIAQTDSEAVAD 105
           YGGNRHGFL F EIHPDYYQIP +DR+ALL               K     +    A A 
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPAADRKALLEEERQAAAAEADEGEKPKRNPRRRKPAKAA 120

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------------------------IS 140
               GD  + +D          +  +    ++                           +
Sbjct: 121 AAESGDAVLVSDEIAGMTVVDPSEGEAVPLDAPLAADTAEAAAPAAAADSAEDAPAEEAA 180

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
            ++ + S  E+          K   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYL
Sbjct: 181 EDDGIESVAEEDMAEEISAPKKPRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYL 240

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGRY VLMPNT++G  ISRKITN  DRK LKEIA  LEVP G G+I+RTAG+ RT+ E
Sbjct: 241 SLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASELEVPEGAGLIIRTAGSQRTRTE 300

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           I+RD+EYLMRLW+ +R+L   S+AP  +YEEG+LIKR IRDLY K+I E++V GE+GYR 
Sbjct: 301 IRRDYEYLMRLWEQIRDLTFKSIAPAPIYEEGDLIKRTIRDLYSKEIDEVLVEGERGYRT 360

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           AKDFMK++MPS+A+ V+ Y D  P++ R  +E  L  +    V L S GY++I  TEALV
Sbjct: 361 AKDFMKMIMPSHAKNVKHYTDAMPLYARYQVESYLGGMFNPVVQLKSGGYIVIGVTEALV 420

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVNSGR+T+E  IEDTAL+TNLEAAEEIARQLRLRDLAGLIV+DFIDMEE+KNN +VE
Sbjct: 421 AIDVNSGRATKEGSIEDTALKTNLEAAEEIARQLRLRDLAGLIVIDFIDMEERKNNAAVE 480

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           K+ K+ LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+A
Sbjct: 481 KRFKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSLA 540

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           L+ILR++EE   +  +  ++V     V  +L+N KR  I   EAR+G+S+ V     L  
Sbjct: 541 LTILRAIEEEGTRKRSREVLVKAPVAVANFLMNAKREHIANIEARYGLSVRVEADPALIS 600

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             + IEK       V           A    +  +    +E +  I      ED  ++  
Sbjct: 601 PDYAIEKFKTATRNVPEVVSPVVSVDARLMAQIDDEEPAEEEVEEIADEPVEEDRAESGD 660

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            E  +   R+RRRRR  +    +   AG  +D  +++    D         +        
Sbjct: 661 GENGSKRRRRRRRRRGGKNGEDEAPHAGDDADEVALETEEADQPAEVEVIVEAVESAPEP 720

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                               E   + + + P   
Sbjct: 721 VAEEAEKPRRRTRTRRRKADEPAEAVAEAGPAEG 754


>gi|254706878|ref|ZP_05168706.1| ribonuclease Rne/Rng domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261314343|ref|ZP_05953540.1| ribonuclease [Brucella pinnipedialis M163/99/10]
 gi|261303369|gb|EEY06866.1| ribonuclease [Brucella pinnipedialis M163/99/10]
          Length = 705

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 375/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYFI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666


>gi|154253716|ref|YP_001414540.1| ribonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154157666|gb|ABS64883.1| ribonuclease, Rne/Rng family [Parvibaculum lavamentivorans DS-1]
          Length = 863

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 350/696 (50%), Positives = 451/696 (64%), Gaps = 7/696 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KMLIDA+H EETRVVV+  NRVEE DFESE++KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MGKKMLIDAAHPEETRVVVVSGNRVEEFDFESENRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV------THGDVTI 114
           YGGNRHGFL F EIHPDYYQIP +DR+ALLK+        +   D+       +      
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALLKQQADEARREKEEEDEDDAEEAPSAKADGN 120

Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
               + +     +   +  E E+++S         ED    +     +   R Y IQEVI
Sbjct: 121 GGQDAEDHGDDHSGDIERGETETVLSDETVESVGAEDAMEEAAPRKQRGNYRSYKIQEVI 180

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKIT   DRK LK 
Sbjct: 181 KRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKG 240

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           IA  L+VP GMG+I+RTAGA RTK EIKRD+EYL+R+W++VREL L S AP+LVYEEG+L
Sbjct: 241 IAESLDVPEGMGLIVRTAGAKRTKAEIKRDYEYLLRMWESVRELTLKSTAPYLVYEEGSL 300

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           IKR+IRDLY KDI  I + G++GYREAK FM++LMPS+A+ V+ Y++  P+F + GIE Q
Sbjct: 301 IKRSIRDLYDKDIDTIQIEGDEGYREAKGFMRMLMPSHAKNVQPYKETQPLFQKFGIEQQ 360

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           LD++ +  VTL S GY++IN TEALVSIDVNSGRST+E  IE TAL+TNLEAAEEI RQ+
Sbjct: 361 LDAMLEPTVTLKSGGYIVINPTEALVSIDVNSGRSTKERNIEQTALKTNLEAAEEITRQM 420

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRDLAGL+V+DFIDM+E +NNR+VE+KLK+ LK DRAR+QVG IS+FGLLEMSRQR+RS
Sbjct: 421 RLRDLAGLVVIDFIDMDENRNNRAVERKLKDCLKTDRARIQVGRISHFGLLEMSRQRMRS 480

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
            VLE +T  C +CKG G +RS  S+AL +LR VE   ++  A    V   + V +Y+LNQ
Sbjct: 481 GVLEGSTVTCQHCKGTGLVRSVESMALHVLRGVEAEAIKGRAAAFTVKVPAVVAIYILNQ 540

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
           KRA I++ E R+G S+ +     L      IE             +   + ++   D+  
Sbjct: 541 KRAKILDVEERYGTSVYIEADATLTGSEHRIEPAEARALTRTRPAQGAINIESGYADEED 600

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV- 653
           E V  +       ++E+ E   D+     +       +RRR+RRR            +  
Sbjct: 601 EPVIAETEDEADDEAEAAEASGDSADRNRADNAEGDGQRRRKRRRRKRKPDGERAEGETQ 660

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
              Q   +D  +   E  + +     E       E+
Sbjct: 661 QDAQGRDEDGDEDGEETGEASEAQPGETSGTAEGED 696


>gi|254488723|ref|ZP_05101928.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. GAI101]
 gi|214045592|gb|EEB86230.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. GAI101]
          Length = 922

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 338/767 (44%), Positives = 457/767 (59%), Gaps = 59/767 (7%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT---------------- 108
           RHGFL F EIHPDYYQIP +DR AL++E         A  D+                  
Sbjct: 61  RHGFLAFSEIHPDYYQIPVADRIALMEEERAYAEAQAAKEDEDEKPKRRTRARSRGKPRA 120

Query: 109 ----HGDVTIPNDHSLEEVAPIANFSQETEE----------------------------- 135
                 D T   D   ++++ +     + EE                             
Sbjct: 121 EDTVSDDATASKDADSDQISGMETVDLDDEEGSSPMERVAETPVEEPDEDVSDSDADDND 180

Query: 136 ---------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186
                    +   S ++ + S  +D          K   ++Y IQEV+K RQILL+Q+VK
Sbjct: 181 DDDDRAPQGQDASSKDDSIESVADDDDHDDLRPARKPRPKRYKIQEVVKVRQILLIQVVK 240

Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246
           EERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LKEIA  ++VP G G
Sbjct: 241 EERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANEIKVPKGAG 300

Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
           +I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP  +YEEG+LIKR+IRDLY ++
Sbjct: 301 LIVRTAGAQRTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRE 360

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
           I E+ V GE+GYR AKDFMK++MPS+A+ V++YE+  P+F R  +E  L  +    V LP
Sbjct: 361 IDEVFVEGERGYRIAKDFMKMIMPSHAKNVKRYEETMPLFARYQVESYLSGMFNPTVQLP 420

Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
           S GY++I  TEALV+IDVNSGR+T+E  IE TA +TNLEAA E+ARQLRLRDLAGLIV+D
Sbjct: 421 SGGYIVIGVTEALVAIDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRDLAGLIVID 480

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDM+E++NN +VEK +K+ LK DRAR+Q+G IS FGL+EMSRQR+R  ++E+TT+ C  
Sbjct: 481 FIDMDERRNNAAVEKMMKDKLKTDRARIQIGRISGFGLMEMSRQRLRPGMIEATTQPCHV 540

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G G IRS  ++ALSILR +EE   +  +  +++     +  +L+NQKR  I   E R+
Sbjct: 541 CHGTGLIRSDDNLALSILREIEEEGTRKRSREVLITAPVGIANFLMNQKREHIAHIEGRY 600

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           G+S+ V     L    F IEK      +V     V S + +   + + +    ++  + +
Sbjct: 601 GMSVRVEGDPTLVSPDFKIEKFKTATRVVVPVEHVVSVNASLMDEIDEQEAEAEDVTVDV 660

Query: 607 PKSESLE-DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
            +++S + D        +       + +RRRRRR  +    A    + +   +  DD   
Sbjct: 661 EEAKSTDTDATQGTSDTDGETDGEDKPKRRRRRRRRSRGGKANGDENGNGDNSGSDDGSS 720

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
              +  D  + + +E  A         +  P   P+   S +    +
Sbjct: 721 DDTKTDDEKSSDAVEAKADAPAGEDVKAAEPEEKPKRTRSRTRKPKV 767


>gi|149202496|ref|ZP_01879468.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035]
 gi|149143778|gb|EDM31812.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035]
          Length = 845

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 346/794 (43%), Positives = 449/794 (56%), Gaps = 79/794 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+QI GNIYLAKVTRVEPSLQAAFVD
Sbjct: 6   MATKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQIAGNIYLAKVTRVEPSLQAAFVD 65

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD-------------- 106
           YGGNRHGFL F EIHPDYYQIP +DR+AL+ E            +D              
Sbjct: 66  YGGNRHGFLAFSEIHPDYYQIPVADREALMAEEEALANAQNDEDEDRPRRSSGGEGRSDG 125

Query: 107 ---------------------------VTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
                                      V   +++      LE+         E       
Sbjct: 126 RSEGRNSRSRSRSRSRTRAEKTQTDDAVATSEISGMETIDLEDETAATAEVPEATSPMER 185

Query: 140 SANNDVVSNVEDVKGGSPEDVPK------------------------------KFKRQYC 169
            A   V    ++    + ED P+                                 R+Y 
Sbjct: 186 VAETPVEEPEDNGADEAGEDEPETDTRDHAAQDDEIESVAEEDDSEDIRPVRKPRARRYK 245

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           IQEV+K RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN VDR
Sbjct: 246 IQEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDR 305

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           K LKEIA  ++VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP  +Y
Sbjct: 306 KKLKEIATEIDVPRGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELTLRSMAPAKIY 365

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           EEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ V+ Y D  P+F R 
Sbjct: 366 EEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKHYVDQQPLFARF 425

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E  L  +    V L S GY++I  TEALV+IDVNSGR+T+E  IE+TAL+TNLEAAEE
Sbjct: 426 QVESYLSGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEE 485

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           +ARQLRLRDLAGLIV+DFIDM+E++NN SVEK+LK+ LK DRAR+QVG IS FGLLEMSR
Sbjct: 486 VARQLRLRDLAGLIVIDFIDMDERRNNASVEKRLKDKLKTDRARIQVGRISGFGLLEMSR 545

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R  ++E+TT+ C  C G G IRS  S+ALSILR +EE  ++  +  ++V     +  
Sbjct: 546 QRLRPGMIEATTQPCPACHGTGLIRSDDSLALSILRQIEEEGVRRRSREVLVKCPVGIAN 605

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH-----KVGSD 584
           YL+NQKR  + + E R+G+S+ +     L    F +EK       V            S 
Sbjct: 606 YLMNQKRDHVAQIEGRYGLSVRIEGDPRLVSPDFTMEKFKTATRNVPEVPMAQFVSGTSA 665

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
                 D+  + + ++        ++S      +   +      R+ RRR+ +     + 
Sbjct: 666 LMDDIDDEVEDEIDEEVEAEAGDDAKSAPTTGGDGGDKPKKSRRRRSRRRKPKNGNGAER 725

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYME---PSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
           +  G   D         +  +                +E       E    +  PV   E
Sbjct: 726 NGEGTDEDREDDDAEASEGSEEQDSAVPAVAAEPEAPVEAPVEAPAEVTAEAEAPVVAEE 785

Query: 702 MESSNSSSDPIVKK 715
                 +  P  KK
Sbjct: 786 QPKPKRTRAPRKKK 799


>gi|319408602|emb|CBI82257.1| ribonuclease E [Bartonella schoenbuchensis R1]
          Length = 864

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 376/745 (50%), Positives = 474/745 (63%), Gaps = 22/745 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A  D     D V             
Sbjct: 61  YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKAAIDENQADDLVEEIKQNKKGSRKT 120

Query: 121 EEVAPIANFSQETEEESIISA---------------NNDVVSNVEDVKGGSPEDVPKKFK 165
           ++    +  S + E   I  +               ++D+     +          +K  
Sbjct: 121 KKSKNHSTLSVDNENNIISESIASDDGEEALDGNVCDDDIEMVGAEDALEELPTYQRKPV 180

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN
Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             DRK LKEI + L VP GMGVILRTAGA+RTK+EIKRD+EYLMRLW+ VR L L S AP
Sbjct: 241 IQDRKRLKEIVKELAVPKGMGVILRTAGANRTKVEIKRDYEYLMRLWETVRTLTLKSTAP 300

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
           +LVYEEGNLIKR+IRDLY KDI+EI+VSG+KGYREAKDFM++LMPS+A++V+ Y D  PI
Sbjct: 301 YLVYEEGNLIKRSIRDLYNKDINEILVSGDKGYREAKDFMRMLMPSHAKVVQPYRDHIPI 360

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R+ IE QLD + Q++V L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLE
Sbjct: 361 FTRNNIEAQLDKMLQSKVALKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLE 420

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEEIARQLRLRDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+
Sbjct: 421 AAEEIARQLRLRDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKNDRARIQVGRISHFGLM 480

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQRIR SVLEST + C +C G G +RS+SS+AL ++RS+E+YLL  + +NIIV T +
Sbjct: 481 EMSRQRIRVSVLESTMQPCPHCAGTGNVRSESSIALHVMRSIEKYLLSNSQYNIIVRTSA 540

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
            + LY+LN KR  +V+ E RF ++I++     +  +   I KG+  +    +   +  D 
Sbjct: 541 VIALYVLNHKRNILVDLETRFKLNISIEADDSVGAQHLVISKGTMAEKDHLSPLAIEDDD 600

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           +    D  +          P+  ++            ++      +   +          
Sbjct: 601 KEEDEDAILMESELTHDEFPVENNQRRRRKNRQSELHDNFSTSSHKDDIQNNEDTRRRGR 660

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV-------S 698
             G      +  N    S   Y EP        LE            +  PV        
Sbjct: 661 RRGHRRGRRNQNNGFYQSRVPYAEPVGEFAKQALEEIKAAHRRYSIPAAEPVGFDEQNAD 720

Query: 699 TPEMESSNSSSDPIVKKTRWWKRRK 723
                +   ++    KK R  + RK
Sbjct: 721 AKHHVNVQQNASFKAKKNRNARPRK 745



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 37/162 (22%), Gaps = 8/162 (4%)

Query: 563 FYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           + I    PV             +  Q  S+        +        K    +       
Sbjct: 704 YSIPAAEPVGFDEQNADAKHHVNVQQNASFKAKKNRNARPRKASQGKKMPENDKSVTTST 763

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             E         + + ++           VS  +           +  + + IT  +  E
Sbjct: 764 PVEEKNTTNSIHKSKTKKENKPTREITEEVSTDTKKSTRQTRKKTITKKTAQITEVSEKE 823

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                  E           P + SS         +  WWKR+
Sbjct: 824 PITKQAVEQVST------KPVVTSSVPEGGNKTGRIGWWKRK 859


>gi|329850505|ref|ZP_08265350.1| ribonuclease, Rne/Rng family domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328840820|gb|EGF90391.1| ribonuclease, Rne/Rng family domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 907

 Score =  489 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 315/633 (49%), Positives = 417/633 (65%), Gaps = 24/633 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  MLIDA+H EETRVVVL  +RVEE DFES  +KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKTMLIDATHTEETRVVVLNGSRVEEFDFESHARKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ L+ E       ++  A D              
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREKLMAELAAQAQSAKDSAKD-------------- 106

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                  N        +  + ++D   +  D        + +   R+Y IQEVIK RQIL
Sbjct: 107 -------NGRDRDSGNNEDADDDDHHEDDGDDLPDEERRLRQHLIRRYKIQEVIKRRQIL 159

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LK +A+ L+
Sbjct: 160 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAPDRKRLKAVAQSLD 219

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RTK EIKRD++YL+R+W+ +RE  L S AP L+YEE +L+KRAIR
Sbjct: 220 VPHGMGLIVRTAGAKRTKQEIKRDYDYLLRVWETIRETTLKSNAPALIYEEEDLVKRAIR 279

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++ KD   ++V G+ GY+ AKDFM+++MPS A+ ++ Y+   P+F R G+E  +  ++ 
Sbjct: 280 DMFDKDFDGVLVEGDDGYKSAKDFMRMIMPSQAKKIQLYKANAPLFARYGVEDLISKIYS 339

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSG+ST+E  IE TAL+TN+EAAEE ARQ+RLRDLA
Sbjct: 340 PVVPLKSGGYLVINQTEALVAIDVNSGKSTKERNIEATALKTNMEAAEEAARQMRLRDLA 399

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GL+V+DFIDM+E KNNRSVEKKLK++L +DRAR+Q+G IS FGL+E+SRQR R+  LE T
Sbjct: 400 GLVVIDFIDMDEPKNNRSVEKKLKDALAEDRARIQMGKISGFGLMEISRQRRRTGFLEGT 459

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T  C +C+G G IRS  S ALS +R ++   +Q  A  I V   + V LY+LN+K+  + 
Sbjct: 460 TVTCPHCEGMGRIRSIDSAALSAMRRIDMEAMQNGAGAITVKLPTAVALYILNEKQVHLA 519

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           +    +G+ +N+ I  +L      I +      +  T        +  ++D   E + +D
Sbjct: 520 KLRLEWGLKVNIEIDNDLGHTDLQIVRTVLATEVEFTP---PVRPEPIAFDPTPEEIAED 576

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
           EAL    +     D      +E S     +  R
Sbjct: 577 EALEVDDEDVVASDEDGEDGAERSEPRADRADR 609


>gi|319404235|emb|CBI77828.1| ribonuclease E [Bartonella rochalimae ATCC BAA-1498]
          Length = 861

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 364/725 (50%), Positives = 466/725 (64%), Gaps = 12/725 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAF++
Sbjct: 1   MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A  ++   A              + 
Sbjct: 61  YGGNRHGFLTFAEIHPDYYQIPIADRLALLEEEKAAINENYEDAPIEETTSNKKSFKKNK 120

Query: 121 EE----VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176
                      +   +  EE +  +NND+     +         P+K  R+Y IQEVIK 
Sbjct: 121 SNNVIATNIENDVIADDVEEILDFSNNDIEMVGAEDVLEELPAYPRKQGRKYKIQEVIKR 180

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
           RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN  DRK LK+I 
Sbjct: 181 RQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKDIV 240

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
           + L+VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L++EE NLIK
Sbjct: 241 KELDVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLKSTAPCLIHEESNLIK 300

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R+IRDLY K+I+EI+VSG++GYREAKDFM++L+PS+A++V+ Y +P PIF  + IE+QLD
Sbjct: 301 RSIRDLYNKNINEILVSGDQGYREAKDFMRMLIPSHAKVVQPYRNPTPIFTHNDIEIQLD 360

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
            +   +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAEE+ARQLRL
Sbjct: 361 KMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAEEVARQLRL 420

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+EMSRQRIR SV
Sbjct: 421 RDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKHDRARIQVGHISHFGLMEMSRQRIRVSV 480

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
           LESTT+ C +C G G IRS+SS+AL ++RS+EEYLL  + +NIIV T   + LY+LN KR
Sbjct: 481 LESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPVTIALYVLNHKR 540

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596
             +V  E RFG+SIN+     +  + F I KGS  +            S     D + + 
Sbjct: 541 HILVNLETRFGLSINIEADDSVGTQHFTISKGSIAKEA--------PLSSTVIEDNDTKE 592

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
                 +       + +    N   E + G I     +                      
Sbjct: 593 TENSILIKSKTVDNNKQRQHKNQQMESNNGSIFPATHKNDTPNAEDTRRRGRRRGRRGGR 652

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            N  ++S         + +                 ++P   T      +   + +    
Sbjct: 653 SNQSNNSQFRISYAEPVGDFAKKALEEIKAEHRQHYNVPAAETVGFSKDSYYKNDLSGIQ 712

Query: 717 RWWKR 721
           +   R
Sbjct: 713 KNKTR 717


>gi|148259405|ref|YP_001233532.1| ribonuclease [Acidiphilium cryptum JF-5]
 gi|146401086|gb|ABQ29613.1| RNAse E [Acidiphilium cryptum JF-5]
          Length = 906

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 326/749 (43%), Positives = 437/749 (58%), Gaps = 45/749 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   MLIDASH EETRVVVL +NR+++ D E+  +KQIKGNIYLAKV RVEPSLQAAFV+
Sbjct: 1   MTKTMLIDASHAEETRVVVLDNNRLDDFDIEAADRKQIKGNIYLAKVIRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT---------------------- 98
           YGGNRHGFL F EIHPDYYQIP +DRQ LL+                             
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRQKLLELEAEEARRRVEAEDAEDEQEAALAAPRPP 120

Query: 99  ------------------DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
                             D+EA A     G+    +           + + E  E +   
Sbjct: 121 RVTEIAIGDAPPDAEGQVDAEAAAAPAEVGEAEADSGPEASGAGAGEDRAGEGAEATATP 180

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
                  +  D    + E    +  R Y IQEVI  RQI+LVQ+VKEERG+KGAA+TTY+
Sbjct: 181 PEQVGGDDGVDGAEEAQERRRLRALRSYKIQEVIHRRQIMLVQVVKEERGSKGAALTTYI 240

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGR+SVLMPN+  G  +SRKIT+  DR+ LKE    LE+P GMG+I+RTAGA+R K E
Sbjct: 241 SLAGRFSVLMPNSPNGGGVSRKITSLADRRRLKEAIAELEIPQGMGMIVRTAGANRPKPE 300

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           IKRD EYL+RLWD++RE  L S+AP LVYEE +LIKR IRD+Y +D+ ++++ GE G+R 
Sbjct: 301 IKRDCEYLLRLWDDIRERTLASIAPALVYEEASLIKRTIRDVYTRDVDQVLIEGEDGFRS 360

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           A+DFM++LMP++ + V+Q+ +  P+F +  +E  LD + Q  V L S GY++INQTEALV
Sbjct: 361 ARDFMRMLMPTHVKKVQQWTERQPLFAKHNVEQMLDQMFQPTVQLKSGGYLVINQTEALV 420

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVNSGR+TRE  IEDTAL+TNLEAAEE+ARQLRLRDLAGLIVVDFIDME +K+N  VE
Sbjct: 421 AIDVNSGRATRERNIEDTALRTNLEAAEEVARQLRLRDLAGLIVVDFIDMETRKHNAMVE 480

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++LK++LK DRAR+QVG+IS+FGLLEMSRQR+R S+ E+    C +C+G G++RS +S A
Sbjct: 481 RRLKDALKNDRARIQVGSISHFGLLEMSRQRLRPSLAETMLIACPHCQGVGHVRSTASTA 540

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           L++LR++E+   +  A  ++VH   DV LY+ N KRA I   EARFG+ +  V    +  
Sbjct: 541 LAVLRAIEDEAARQ-AAELLVHLTPDVALYIFNHKRAQIAATEARFGMKVVFVADGTV-P 598

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             F IEK     A           + A + +   E    + A      +      +    
Sbjct: 599 ATFKIEKVKAHAARPQETPAPTFRAPAETEEVEAEQQGDEVATEDAAGNAGKAADEVERR 658

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                     RR              AG+ ++  S  N +  +               +E
Sbjct: 659 RRRRRRRRGGRREDLVSAPTGEQPEIAGIPAEFESRMNDVLPTAARADAAEAPAPEVTME 718

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                  E       P   P++  ++ ++
Sbjct: 719 P---AVAETAPAVPEPAKEPKVVETSPAA 744


>gi|330993176|ref|ZP_08317113.1| Ribonuclease E [Gluconacetobacter sp. SXCC-1]
 gi|329759727|gb|EGG76234.1| Ribonuclease E [Gluconacetobacter sp. SXCC-1]
          Length = 996

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 299/626 (47%), Positives = 399/626 (63%), Gaps = 19/626 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +MLID +H EETRVVV+  + +E+ D E+  KKQ+KGNIYLAKV RVEPSLQAAFVD
Sbjct: 1   MSKRMLIDTTHAEETRVVVMDGHHLEDYDVEAASKKQLKGNIYLAKVIRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ LL      +   E         +       + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREKLLALQEEERRAEEERRARDDEEEDAPAAATAE 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E      +   ET           V    +       +    +F R Y IQEVI+ RQIL
Sbjct: 121 EGEEAAEDDEPET-----------VGGENDTGDEAQAQRRIARFLRNYKIQEVIRRRQIL 169

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G  +SRKIT+  DR+ L++I   L+
Sbjct: 170 LVQVVKEERGNKGAALTTYVSLAGRYCVLMPNSLRGGGVSRKITSVADRRRLRDIITELQ 229

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P GM +I+RTAGA R + EI RD EYL+RLWD++R+  L SVAP L+YEE +LIKRAIR
Sbjct: 230 IPRGMAMIVRTAGAQRPRAEIMRDCEYLLRLWDDIRQHTLESVAPALIYEEASLIKRAIR 289

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLH 359
           D+Y +++SEI++ GE G++ A++FM++LMP  A ++    +    +F    +E  LDS+ 
Sbjct: 290 DIYTREVSEILIDGEPGWKSAREFMRMLMPQNAQKVRLWQDHEQTLFSHYKVEGLLDSML 349

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++INQTEALV+IDVNSGR+TRE  IE+TAL+TNLEAAEE+ARQLRLRDL
Sbjct: 350 SPSVQLKSGGYLVINQTEALVAIDVNSGRATRERNIEETALRTNLEAAEEVARQLRLRDL 409

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           AGLIV+DFIDME +K+N  VE+KLK++L+ DRAR+QVG IS+FGLLEMSRQR+R S+ ES
Sbjct: 410 AGLIVIDFIDMESRKHNGMVERKLKDALRNDRARIQVGQISHFGLLEMSRQRLRPSIAES 469

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
               C +C+G G +R   S AL +LR++E+  +Q  A  I V    ++  Y+LN KR+ +
Sbjct: 470 AFMPCPHCQGTGIVRGIESSALHVLRAIEDEGMQRKAAEISVAVAPEIAFYILNNKRSWL 529

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E EAR  + +       L  +   IE+  P  A         + +           V +
Sbjct: 530 GEIEARHKMHVVFAPDAALQPQDCTIERVRPQTARFEAPVIEHAPA-------EGSHVRE 582

Query: 600 DEALLPIPKSESLEDIQDNIVSEEST 625
            +     P +E+  D       E+  
Sbjct: 583 IQIQAEPPAAEATPDEHATGTEEDED 608


>gi|296114863|ref|ZP_06833511.1| ribonuclease, Rne/Rng family [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978569|gb|EFG85299.1| ribonuclease, Rne/Rng family [Gluconacetobacter hansenii ATCC
           23769]
          Length = 974

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 320/710 (45%), Positives = 428/710 (60%), Gaps = 19/710 (2%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLID +H EETRVVV+  NR+E+ D E+  KKQ+KGNIYLAKV RVEPSLQAAFVDYGGN
Sbjct: 1   MLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP +DR+ LL      +   EA        D     D    + A
Sbjct: 61  RHGFLAFSEIHPDYYQIPVADREKLLALQEEERRAEEARNARED--DEKAEGDDGATDDA 118

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
           P      +  E   +   ND     E  +  +      +F R Y IQEVI+ RQILLVQ+
Sbjct: 119 PPREGDADEAEPETVGGENDTGDEPEAQRRIA------RFLRNYKIQEVIRRRQILLVQV 172

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G  +SRKIT+  DR+ L++I   L++P G
Sbjct: 173 VKEERGNKGAALTTYVSLAGRYCVLMPNSLRGGGVSRKITSVADRRRLRDIISELQIPHG 232

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304
           M +I+RTAGA R + EI RD EYL+RLWD++RE  L SVAP L+YEE +LIKRAIRD+Y 
Sbjct: 233 MAMIVRTAGAQRPRAEIMRDCEYLLRLWDDIREHTLKSVAPALIYEEASLIKRAIRDIYT 292

Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
           +++ EI++ GE G++ A++FM++LMP  A ++    +    +F    +E  LDS+    V
Sbjct: 293 REVGEIMIDGEAGWKSAREFMRMLMPQNAQKVRLWQDHGQTLFSHYRVEGLLDSMLSPSV 352

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY++INQTEALV+IDVNSGR+T+E  IE+TAL+TNLEAA+E+ARQLRLRDLAGLI
Sbjct: 353 QLRSGGYLVINQTEALVAIDVNSGRATKERNIEETALRTNLEAADEVARQLRLRDLAGLI 412

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDME +K+N  VE++LKE+L+ DRAR+QVG IS+FGLLEMSRQR+R S+ EST   
Sbjct: 413 VIDFIDMESRKHNGMVERRLKEALRNDRARIQVGHISHFGLLEMSRQRLRPSIAESTFMP 472

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +C+G G IR   S AL +LR++E+  +Q  A  I VH   ++ LY+LN KRA + E E
Sbjct: 473 CPHCEGTGIIRGVESSALHVLRAIEDEGMQRRAAEIAVHVAPEIALYILNNKRAWLHEIE 532

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI--------- 594
            R  + +       L      IE+     A           ++  +   +          
Sbjct: 533 ERHKMHVTFAADSTLHAAESRIERTRAQTAQFEPAPTPAITAEPEAARADATGVREIPIH 592

Query: 595 -ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
            E     E   P P   S    +D     +     R+RRRR    R A         +++
Sbjct: 593 SEPPATTEEGAPTPTDASPVVDEDAASGTDHRRRRRRRRRRGGTNREAEQQGVETAETEI 652

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
           +++   + +       P+D     +++            +  PV  PE  
Sbjct: 653 TALPEPVVEIGYKGPTPADPFGDAIIDIFDVIEQTTTLPASAPVIEPEAP 702



 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 32/154 (20%), Gaps = 14/154 (9%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                  V         +             +  +     K ++ E  +      E    
Sbjct: 835 VEKADEPVAEEKPRRRRTATTRTAAAKAPARRRTSTAKAVKDDAAEVTEATAPVVEEKAE 894

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            + + RR  RR+      +        +     + +       +                
Sbjct: 895 EKPKARRVTRRKKVEVEAEPAATPTTEAAPTAEEKAPARKATRTRRKKVETAPAPEATPA 954

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           E  D    P                 ++T WWKR
Sbjct: 955 EPVDAEAAPAPK--------------RRTGWWKR 974


>gi|319407243|emb|CBI80882.1| ribonuclease E [Bartonella sp. 1-1C]
          Length = 860

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 369/733 (50%), Positives = 474/733 (64%), Gaps = 17/733 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAF++
Sbjct: 1   MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A  ++   A              + 
Sbjct: 61  YGGNRHGFLTFAEIHPDYYQIPIADRLALLEEEKAAINENYEDAPIEETTSNKKSFKKNK 120

Query: 121 EEV----APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176
                      +   +  EE +  +NND+     +         P+K  R+Y IQEVIK 
Sbjct: 121 SNDVIATNIENDVIADDVEEILDFSNNDIEMVGAEDVLEELPAYPRKQGRKYKIQEVIKR 180

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
           RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN  DRK LK+I 
Sbjct: 181 RQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKDIV 240

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
           + L+VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L++EE NLIK
Sbjct: 241 KELDVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLKSTAPCLIHEESNLIK 300

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R+IRDLY K+I+EI+VSG++GYREAKDFM++L+PS+A++V+ Y +P PIF  + IE+QLD
Sbjct: 301 RSIRDLYNKNINEILVSGDQGYREAKDFMRMLIPSHAKVVQPYRNPTPIFTHNDIEIQLD 360

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
            +   +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAEE+ARQLRL
Sbjct: 361 KMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAEEVARQLRL 420

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+EMSRQRIR SV
Sbjct: 421 RDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKHDRARIQVGHISHFGLMEMSRQRIRVSV 480

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
           LESTT+ C +C G G IRS+SS+AL ++RS+EEYLL  + +NIIV T   + LY+LN KR
Sbjct: 481 LESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPVAIALYVLNHKR 540

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGS 583
             +V  E RFG+SIN+     +  + F I KG                         +  
Sbjct: 541 HILVNLETRFGLSINIEADDSVGTQHFTISKGSIAKEASLSSTVIEDNDTKETENSILIK 600

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
                +  +      Q E+          ++   N+      G  R RR  R  +   + 
Sbjct: 601 SKTVDNNKRRQRKNQQMESDNGSIFPADHKNDTPNVEDTRRRGRRRGRRGGRSNQSNNSP 660

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              +         +N + +  +   +  +I     +        +    SI    T E  
Sbjct: 661 FRVSYAEPVGDFAKNALAEIKEEQRQYYNIPATETVRFNKDSHYKKDVSSIQKNETREDR 720

Query: 704 SSNSSSDPIVKKT 716
           ++  S    VK +
Sbjct: 721 TAIKSKKRNVKSS 733


>gi|163795152|ref|ZP_02189120.1| Ribonuclease E and G [alpha proteobacterium BAL199]
 gi|159179550|gb|EDP64079.1| Ribonuclease E and G [alpha proteobacterium BAL199]
          Length = 910

 Score =  486 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 325/720 (45%), Positives = 444/720 (61%), Gaps = 12/720 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLID++H EETRVVV+  NR+E+ DFE+  KKQ+KGNIYLA++TRVEPSLQAAFV+
Sbjct: 1   MTKRMLIDSTHPEETRVVVVDGNRLEDFDFETATKKQLKGNIYLARITRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYY+IP  DR+ALL+E     ++      D              
Sbjct: 61  YGGNRHGFLAFSEIHPDYYRIPIEDREALLREERARASEEMEDDHDEPD---------VS 111

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE +        +  +   +        V            K   R+Y IQEV+  RQI+
Sbjct: 112 EEPSAPETDEAASGGDGDAAEAQARPETVGGDPVEDVRRKRKSVNRRYKIQEVVARRQIM 171

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  +SRKIT+  DRK LK+I  GL+
Sbjct: 172 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKITHTGDRKRLKQIVEGLD 231

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GM VI+RTAG+ RTK EIKRD+EYL+RLWD++RE  L S AP L+YEE NLIKR+IR
Sbjct: 232 VPDGMAVIVRTAGSERTKTEIKRDYEYLLRLWDDIRETTLKSSAPCLIYEEANLIKRSIR 291

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI-VRQYEDPHPIFFRSGIEVQLDSLH 359
           DLY +DI E+ V GE+GYR AKDFMK L+PS+A+      +   P+  R  +E QLD++H
Sbjct: 292 DLYARDIDEVQVEGEEGYRIAKDFMKALVPSHAKRVQPYRDPHTPLLHRYQVESQLDAIH 351

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY+++NQTEALV+IDVNSGR+T E  IE+TAL+TNLEAA+E+ARQLRLRDL
Sbjct: 352 SPSVELKSGGYIVLNQTEALVAIDVNSGRATSERNIEETALKTNLEAADEVARQLRLRDL 411

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           AGLIV+DFIDMEE +N  +VE+++KE++K DRAR+Q+G IS+FGL+E+SRQR+R S+ E+
Sbjct: 412 AGLIVIDFIDMEESRNQHAVERRMKEAMKSDRARIQIGRISHFGLMELSRQRLRPSLFEA 471

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           +T+VC +CKG G+IRS  S AL  LR +EE  ++  +  I+V+  + + LY+LN KR+ +
Sbjct: 472 STQVCPHCKGTGHIRSVESAALHALRVIEEEGMRNRSAEIVVYIPASIALYILNHKRSRL 531

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E E R+G  + +     L      IE+  P  A      +    S     ++  + V +
Sbjct: 532 AEIEQRYGCQVLLEQDDTLIPPDHRIERPRPKTAEERAAFQNAVASVPVVIEEEDDVVDE 591

Query: 600 DE--ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +         ++S         S++  G  R RRRRR  RR + +  D    ++ ++  
Sbjct: 592 ADDGEENEDQPAQSKRASAPEQASDDERGARRPRRRRRGGRRRSGEGSDERPAAETATPD 651

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             + ++        +    ++         +               S   +S     +T 
Sbjct: 652 GDVGEADTADRPAGENEERSVESEEDEATRKRRRRGRRGGRRRARRSDEDTSVQSGDETG 711



 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
           +       D  A S         +             +         + T   + +R   
Sbjct: 764 DAPELEAVDVAAASAAPADVVTEEPVKKAKPRSRAKAKPAAKPADKADETVAEKPKRGAP 823

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           RRR+ A    ++  V++V        D+ D  +      + ++ ++           +  
Sbjct: 824 RRRKKAEPAEESATVAEVPVEAAPATDATDHAITGEPGRDQSIAQDVEVPAASAAVPAND 883

Query: 696 PVSTPEMESSNSSSDPIVK-KTRWWKR 721
            ++T  +    +   P+ K K  WW+R
Sbjct: 884 AIATAPLIEVKTIDAPVEKPKKGWWRR 910


>gi|209964911|ref|YP_002297826.1| ribonuclease, Rne [Rhodospirillum centenum SW]
 gi|209958377|gb|ACI99013.1| ribonuclease, Rne [Rhodospirillum centenum SW]
          Length = 1035

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 331/691 (47%), Positives = 418/691 (60%), Gaps = 60/691 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +ML+DA+H EETRVVV+  NR+EELDFE   +KQ+KGNIYLAKV RVEPSLQAAFV+
Sbjct: 1   MAKRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDV-------- 112
           YGGNRHGFL F EIHPDYY+IP +DR+ALL+E        +     V   +         
Sbjct: 61  YGGNRHGFLAFSEIHPDYYRIPVADREALLREQEREYEAGDREPASVEQVEDAAAGIEET 120

Query: 113 -------------------TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153
                                  D S  E  P         +    S      +      
Sbjct: 121 SAGAVPVDEIGGAAPSLMDEGTPDGSSAEDGPEGESPLSAGDPEDGSDFAGEGAEDAGPD 180

Query: 154 GGSPEDVPKKFK---------------------------------RQYCIQEVIKNRQIL 180
           G + E      +                                 + Y IQEVIK RQIL
Sbjct: 181 GRATELRHSNGREGRRERRAAAAADGGETVEEDTEEERRRRPRPLKSYKIQEVIKRRQIL 240

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KEERGNKGAA+TTYLSL GRY VLMPNT +G  ISRKITNP DRK +KE+  GL+
Sbjct: 241 LVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITNPADRKRMKELLEGLD 300

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GM VILRTAG  R+K EIKRD EYLMRLWD++REL L SVAP L+YEE NLIKR+IR
Sbjct: 301 VPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVAPALIYEEANLIKRSIR 360

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLY  DI E+IV GE+GYR AKDFM++LMPS+A+ V+ Y+D  P+F R  +E  ++++  
Sbjct: 361 DLYASDIDEVIVEGEQGYRTAKDFMRMLMPSHAKKVQPYKDDIPLFHRFQVEGAIETMFD 420

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSGRST+E  IE+TAL+TNLEAAEEIARQLRLRDLA
Sbjct: 421 PVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNLEAAEEIARQLRLRDLA 480

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDMEE +NN SVEK+LKE++K DRAR+Q+G IS FGLLE+SRQR+R S+ E  
Sbjct: 481 GLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGLLELSRQRLRPSLQEIN 540

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C +C G G +RS  S AL++LR++EE  ++  +  I V   + +VLY+LNQKR ++ 
Sbjct: 541 FERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAAASLVLYILNQKRESLT 600

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
             E R+G+ + +     L      +E+    Q   +      + S    Y +    +  +
Sbjct: 601 AIERRYGLRVYLAADDSLTPPAHRLERLRARQPGDDLPVAQTTVSAEKVYAETDRALEVE 660

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           EA       E  E+                R
Sbjct: 661 EAEEAEELEEETEESAATAPQTAEERSQGDR 691


>gi|326402627|ref|YP_004282708.1| ribonuclease E [Acidiphilium multivorum AIU301]
 gi|325049488|dbj|BAJ79826.1| ribonuclease E [Acidiphilium multivorum AIU301]
          Length = 906

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 326/742 (43%), Positives = 433/742 (58%), Gaps = 45/742 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   MLIDASH EETRVVVL +NR+++ D E+  +KQIKGNIYLAKV RVEPSLQAAFV+
Sbjct: 1   MTKTMLIDASHAEETRVVVLDNNRLDDFDIEAADRKQIKGNIYLAKVIRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT---------------------- 98
           YGGNRHGFL F EIHPDYYQIP +DRQ LL+                             
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRQKLLELEAEEARRRVEAEDAEDEQEAALAAPRPP 120

Query: 99  ------------------DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
                             D+EA A     G+    +           + + E  E +   
Sbjct: 121 RVTEIAIGDAPPDAEGQVDAEAAAAPAEVGEAEADSGPEASGAGAGEDRAGEGAEATATP 180

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
                  +  D    + E    +  R Y IQEVI  RQI+LVQ+VKEERG+KGAA+TTY+
Sbjct: 181 PEQVGGDDGVDGAEEAQERRRLRALRSYKIQEVIHRRQIMLVQVVKEERGSKGAALTTYI 240

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGR+SVLMPN+  G  +SRKIT+  DR+ LKE    LE+P GMG+I+RTAGA+R K E
Sbjct: 241 SLAGRFSVLMPNSPNGGGVSRKITSLADRRRLKEAIAELEIPQGMGMIVRTAGANRPKPE 300

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           IKRD EYL+RLWD++RE  L S+AP LVYEE +LIKR IRD+Y +D+ ++++ GE G+R 
Sbjct: 301 IKRDCEYLLRLWDDIRERTLASIAPALVYEEASLIKRTIRDVYTRDVDQVLIEGEDGFRS 360

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           A+DFM++LMP++ + V+Q+ +  P+F +  +E  LD + Q  V L S GY++INQTEALV
Sbjct: 361 ARDFMRMLMPTHVKKVQQWTERQPLFAKHNVEQMLDQMFQPTVQLKSGGYLVINQTEALV 420

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVNSGR+TRE  IEDTAL+TNLEAAEE+ARQLRLRDLAGLIVVDFIDME +K+N  VE
Sbjct: 421 AIDVNSGRATRERNIEDTALRTNLEAAEEVARQLRLRDLAGLIVVDFIDMETRKHNAMVE 480

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++LK++LK DRAR+QVG+IS+FGLLEMSRQR+R S+ E+    C +C+G G++RS +S A
Sbjct: 481 RRLKDALKNDRARIQVGSISHFGLLEMSRQRLRPSLAETMLIACPHCQGVGHVRSTASTA 540

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           L++LR++E+   +  A  ++VH   DV LY+ N KRA I   EARFG+ +  V    +  
Sbjct: 541 LAVLRAIEDEAARQ-AAELLVHLTPDVALYIFNHKRAQIAATEARFGMKVVFVADGTV-P 598

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             F IEK     A           + A + +   E    + A      +      +    
Sbjct: 599 ATFKIEKVKAHAARPQETPAPTFRAPAETEEVEAEQQGDEVATEDAAGNAGKAADEVERR 658

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                     RR              AG+ ++  S  N +  +               +E
Sbjct: 659 RRRRRRRRGGRREDLVSAPTGEQPEIAGIPAEFESRMNDVLPTAARADAAEAPAPEVTME 718

Query: 681 NGAHGFTENYDVSIPPVSTPEM 702
                  +       P   PE+
Sbjct: 719 P---AVADTAPAVPEPAKEPEV 737


>gi|319405672|emb|CBI79295.1| Ribonuclease E [Bartonella sp. AR 15-3]
          Length = 865

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 373/738 (50%), Positives = 474/738 (64%), Gaps = 22/738 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAF++
Sbjct: 1   MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND--- 117
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E      ++   A                
Sbjct: 61  YGGNRHGFLTFAEIHPDYYQIPVADRLALLEEEKAVINENYEDAPIEETTLNKKRLKKNK 120

Query: 118 ------HSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171
                  ++E          +  EE +  +N+D+     +         P+K  RQY IQ
Sbjct: 121 NNKVIATNIENDLISEEIIADDVEEILDFSNDDIEMVGAEDALEELPAYPRKQGRQYKIQ 180

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
           EVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN  DRK 
Sbjct: 181 EVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKR 240

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
           LK+I + LEVP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L++EE
Sbjct: 241 LKDIVKELEVPRGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLKSTAPCLIHEE 300

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
            NLIKR+IRDLY K+I+EI+VSG++GYREAKDFM++L+PS+A++V+ Y D  PIF    I
Sbjct: 301 SNLIKRSIRDLYDKNINEILVSGDQGYREAKDFMRMLIPSHAKVVQPYRDTTPIFTHHNI 360

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E QLD +   +V L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAEEIA
Sbjct: 361 ETQLDKMLHPQVNLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAEEIA 420

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRDLAGLIV+DFIDM E +N + VEKKLK+ LK+DRAR+QVG IS+FGL+EMSRQR
Sbjct: 421 RQLRLRDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKQDRARIQVGHISHFGLMEMSRQR 480

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
           IR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL  + HNIIV T   + LY+
Sbjct: 481 IRVSVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQHNIIVRTPLTIALYV 540

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV-----------QALVNTGHK 580
           LN KR  +V  E RFG+SIN+     +  + F I K S                +     
Sbjct: 541 LNHKRHILVNLETRFGLSINIEADDSVGTQHFAISKSSIAKGDPFSSTVIEDNDIKEIEN 600

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                     +       + +         S  D  D    E++    R+R RR  RR  
Sbjct: 601 TVLIKNKTVENNKQRQRKKHQIESNNDSISSATDKDDAPNGEDTHRRGRRRGRRGGRRNQ 660

Query: 641 ATDHHDAGVVSDV--SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           + ++      ++      +  +++    Y +   I     +        +N+  S     
Sbjct: 661 SNNYQPRVSYAEPVGDFAKKALEEIKAEYHQYHKIPAAETVGFNEDSHYKNHLSSTQKNE 720

Query: 699 TPEMESSNSSSDPIVKKT 716
             E  ++  S    VK +
Sbjct: 721 IIESSTAIKSKKRNVKSS 738


>gi|89069855|ref|ZP_01157189.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus
           HTCC2516]
 gi|89044531|gb|EAR50650.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus
           HTCC2516]
          Length = 860

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 342/748 (45%), Positives = 444/748 (59%), Gaps = 57/748 (7%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+  N+VEE DFE++ K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDATHAEETRVVVVDGNKVEEFDFEAQAKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKES----NIAQTDSEAVADD-------------- 106
           RHGFL F EIHPDYYQIP +DR+ALL E        + + EA                  
Sbjct: 61  RHGFLAFSEIHPDYYQIPVADREALLAEEKAYAESQRAEDEAEEKPAPKKRRSRSRAKPK 120

Query: 107 --------------------------------------VTHGDVTIPNDHSLEEVAPIAN 128
                                                    GD  +    ++ E      
Sbjct: 121 AADTETADPVATGEVEGGDAASDESASEIKGMETIDLGEGEGDEGLSPMETVPETPVETP 180

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
            + E         + D+ S  ++        V K   R+Y IQEV+K RQI+LVQ+VKEE
Sbjct: 181 AADEDASGDEPDPSADIESVADEDDTDDVRPVRKPRPRRYKIQEVVKVRQIMLVQVVKEE 240

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
           RGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LKEIA  ++VP G G+I
Sbjct: 241 RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIAGAMDVPEGAGLI 300

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +RTAG+ RTK EIKRD+EYL RLW+ +REL L S+AP  +YEEGNLIKR+IRDLY K+I 
Sbjct: 301 IRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLKSIAPAPIYEEGNLIKRSIRDLYSKEID 360

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
           E+IV GE GYR AKDFMK++MPS+A+ V+ Y+D  P+F R  +E  L+S+    V LPS 
Sbjct: 361 EVIVEGEAGYRTAKDFMKMIMPSHAKNVKNYQDSMPLFARHQVESYLNSMFNPTVQLPSG 420

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
           GY++I  TEALV+IDVNSGR+T+E  IE TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFI
Sbjct: 421 GYIVIGVTEALVAIDVNSGRATKEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFI 480

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488
           DM+E+KNN +VEK++KE LK DRAR+QVG IS FGLLEMSRQR+R  +LE+TT+ C++C 
Sbjct: 481 DMDERKNNAAVEKRMKEKLKTDRARIQVGRISGFGLLEMSRQRLRPGMLEATTQPCSHCH 540

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           G G +RS  +VALSILR +EE  ++  +  ++V     +  +L+NQKR  I   EAR+G+
Sbjct: 541 GTGLLRSDDNVALSILRQIEEEGVRGRSKEVLVRAPVSIANFLINQKREHIAGIEARYGL 600

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
           S+ V   + +    F +EK      +V     V   S+  S D+    V +  A     +
Sbjct: 601 SVRVEGDVTMISPDFALEKFKTATRVVAEAAPVVVSSETASMDEEEAVVEETAAEEDEAQ 660

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ-NVIDDSFDMY 667
                        E+     R+RRRR+          D    +   + +     ++    
Sbjct: 661 EAQETPDTGESGDEKPKKRRRRRRRRKGGNGEGNGEGDEAQAASAENAEAKPEAETAPAE 720

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIP 695
             P         +      T     +  
Sbjct: 721 PAPEGEGEAEEAKPKKRTRTRGGARARK 748


>gi|49475635|ref|YP_033676.1| ribonuclease E [Bartonella henselae str. Houston-1]
 gi|49238442|emb|CAF27670.1| Ribonuclease E [Bartonella henselae str. Houston-1]
          Length = 880

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 364/694 (52%), Positives = 459/694 (66%), Gaps = 32/694 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A      +   +   +         
Sbjct: 61  YGGNRHGFLTFSEIHPDYYQIPLADRLALLEEEEKAAVGESHIDVLIEETNKNKKRSRKT 120

Query: 121 EEVAPIANFSQETEEE---------------SIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           ++    +  + +                       +++D+     +          +K  
Sbjct: 121 KKDKKNSTMAADVVNNITFDAITIDDAEEAFDANVSHDDIEMVGAEDVREELPTYQRKQG 180

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN
Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYL RLWD VR L L S AP
Sbjct: 241 AQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLTRLWDTVRTLTLKSTAP 300

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            LV+EE NLIKR+IRDLY K+I+EI+VSG++GYREAKDFM++LMPS+A++V+ Y DP PI
Sbjct: 301 CLVHEESNLIKRSIRDLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPI 360

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R+ IE+QLD +   +V+L S GY++INQTEALV+IDVNSGRST+E  +E TALQTNLE
Sbjct: 361 FARNNIEIQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKELSVEKTALQTNLE 420

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEEIARQLRLRDLAGLIV+DFIDM E++N R VEKKLK+ LK DRAR+QVG IS+FGLL
Sbjct: 421 AAEEIARQLRLRDLAGLIVIDFIDMLEERNVRMVEKKLKDCLKNDRARIQVGHISHFGLL 480

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQRIR SVLESTT  C +C G G +RS+SS+AL ++RS+EEYLL    HNI V T  
Sbjct: 481 EMSRQRIRISVLESTTHPCPHCSGTGNVRSESSIALHVMRSIEEYLLHNPKHNITVRTPV 540

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
               Y+LN KR  +V  EARF ++I++     +  +   I KG+  + +           
Sbjct: 541 ATAFYVLNHKRNILVNLEARFKLNISIEADDSIGTQHLIISKGTIAETI---------SQ 591

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
               ++ + + V ++  L    +SE +ED         ++    ++RRR+ R+    D  
Sbjct: 592 PPLIFENDHKEVIENTLLRESRESEFIEDN--------TSIETNQKRRRKNRQDEIHDSS 643

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
            + V      +                  N    
Sbjct: 644 LSTVHKKDDIVNEDSRRRGRRRGRRGGRRNQENN 677


>gi|256061017|ref|ZP_05451174.1| ribonuclease Rne/Rng domain-containing protein [Brucella neotomae
           5K33]
 gi|261325017|ref|ZP_05964214.1| ribonuclease [Brucella neotomae 5K33]
 gi|261300997|gb|EEY04494.1| ribonuclease [Brucella neotomae 5K33]
          Length = 891

 Score =  481 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 383/763 (50%), Positives = 474/763 (62%), Gaps = 65/763 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V                  +     ++  +P+ + E+ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQP----------MVYEDDIEDPEIPVEEDETE 650

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           E+ + ++ + E              R+        G         +  +++        D
Sbjct: 651 EEARTDVQAGEERSEE-------NDRKRRRRRRRRGGRERDGRDLSAQEEAVSEDASEED 703

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                  E  +       D              N   D    +
Sbjct: 704 NETDQANEAVSSASMSEEDRRKKRRRGRRGGRKNRREDDNRAR 746



 Score = 44.2 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            +                 +  V  +E++  + ++    +      + E       R+ R
Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799

Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            R++        +A   ++    +     +     +P                    +  
Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             P ST  + +S+ S D   K++ WW+++
Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888


>gi|240850605|ref|YP_002972005.1| ribonuclease E [Bartonella grahamii as4aup]
 gi|240267728|gb|ACS51316.1| ribonuclease E [Bartonella grahamii as4aup]
          Length = 876

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 369/692 (53%), Positives = 461/692 (66%), Gaps = 37/692 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEH+KQ+KGNIYLA++TRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A     +V                 
Sbjct: 61  YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKAAVGENSVDSFTEEATKNKKRSRRT 120

Query: 121 EEVAPIANFSQETEEESIIS---------------ANNDVVSNVEDVKGGSPEDVPKKFK 165
           ++       + + E +                   + +++     +          +K  
Sbjct: 121 KKNGKNNVIAADIENDITSETTIIDNTEEALNADISYDEIEMVGAEDIREELPIYQRKQG 180

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN
Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP
Sbjct: 241 VQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAP 300

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            LV+EE NLIKR+IRDLY K+ISEI+VSG++GYREAKDFM++LMPS+A++V+ Y DP PI
Sbjct: 301 CLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPTPI 360

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R+ IE+QLD + Q +V+L S GY++INQTEALV+IDVNSGRST+E  +E TALQTNLE
Sbjct: 361 FARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLE 420

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQLRLRDLAGLIV+DFIDM E++N + VEKKLK+ LK DRAR+QVG IS+FGLL
Sbjct: 421 AAEEVARQLRLRDLAGLIVIDFIDMLEERNVKLVEKKLKDCLKNDRARIQVGHISHFGLL 480

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL  + +NIIV T  
Sbjct: 481 EMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPV 540

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
              LY+LN KR  +V  E RF ++I++     +  +   I KGS  +             
Sbjct: 541 ATALYVLNHKRNILVNLETRFKLNISIEADDSIGTQHLVISKGSIAE-----------SI 589

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
             PS +   +   +D   +     E+   I  N           ++RRR+ R    TDH 
Sbjct: 590 SRPSLEDVNKQEIEDSVFIESESIENPSPIGTN-----------QKRRRKNRHDEITDHS 638

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
            + V     ++ N                N +
Sbjct: 639 LSNVHKKEDTLSNDSYRRGRRRGRRGGRRNQD 670



 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 98/363 (26%), Gaps = 15/363 (4%)

Query: 361 TEVTLPSRGYVIINQTEALVSIDV-NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
            E  L +  Y II +T    ++ V N  R+   +      L  ++EA + I  Q  +   
Sbjct: 523 EEYLLHNSQYNIIVRTPVATALYVLNHKRNILVNLETRFKLNISIEADDSIGTQHLVISK 582

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
             +         E  N + +E  +    +       +   S  G  +  R++ R    E 
Sbjct: 583 GSIAESISRPSLEDVNKQEIEDSVFIESES------IENPSPIGTNQKRRRKNR--HDEI 634

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T    +         S  S      R               +         + +  +  +
Sbjct: 635 TDHSLSNVHKKEDTLSNDSYRRGRRRGRRGGRRNQDNSFHQIRIPY--AEPVGDFAKQAL 692

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E +A       V        +       +          K+ +  +          V +
Sbjct: 693 AEIKAAHRKH-RVSPAKSFELEETKNNTQALDIQQQGESKKIDTSIKPKKRKTRSSKVVE 751

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
           ++  L   ++   +   +      S    + ++  +   +           S  S+    
Sbjct: 752 NQLSLDNDQNVVEQKSLEEKPKTSSVRKAKTKKADKSIHK---VEDKTFENSKKSTRGTR 808

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
              S     +   +     +         +       ++ P + SS  +     ++  WW
Sbjct: 809 KKSSSKETTQIQKVLEKETIIEMEEVVETSPSQIEKTINQPVVVSSTPNDSSKTERVGWW 868

Query: 720 KRR 722
           KRR
Sbjct: 869 KRR 871


>gi|17987340|ref|NP_539974.1| ribonuclease E / zinc metalloprotease [Brucella melitensis bv. 1
           str. 16M]
 gi|225852424|ref|YP_002732657.1| ribonuclease, Rne/Rng family protein [Brucella melitensis ATCC
           23457]
 gi|256044584|ref|ZP_05447488.1| ribonuclease Rne/Rng domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256264078|ref|ZP_05466610.1| ribonuclease E and G [Brucella melitensis bv. 2 str. 63/9]
 gi|260563937|ref|ZP_05834423.1| ribonuclease E and G [Brucella melitensis bv. 1 str. 16M]
 gi|265991009|ref|ZP_06103566.1| ribonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983023|gb|AAL52238.1| ribonuclease e / zinc metalloprotease [Brucella melitensis bv. 1
           str. 16M]
 gi|225640789|gb|ACO00703.1| ribonuclease, Rne/Rng family protein [Brucella melitensis ATCC
           23457]
 gi|260153953|gb|EEW89045.1| ribonuclease E and G [Brucella melitensis bv. 1 str. 16M]
 gi|263001793|gb|EEZ14368.1| ribonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094281|gb|EEZ18142.1| ribonuclease E and G [Brucella melitensis bv. 2 str. 63/9]
 gi|326408935|gb|ADZ66000.1| ribonuclease, Rne/Rng family protein [Brucella melitensis M28]
 gi|326538649|gb|ADZ86864.1| ribonuclease, Rne/Rng family protein [Brucella melitensis M5-90]
          Length = 891

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 374/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 44.6 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            +                 +  V  +E++  + ++    +      + E       R+ R
Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799

Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            R++        +A   ++    +     +     +P                    +  
Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             P ST  + +S+ S D   K++ WW+++
Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888


>gi|163868350|ref|YP_001609559.1| ribonuclease E [Bartonella tribocorum CIP 105476]
 gi|161018006|emb|CAK01564.1| ribonuclease E [Bartonella tribocorum CIP 105476]
          Length = 871

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 371/740 (50%), Positives = 475/740 (64%), Gaps = 46/740 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVVVIHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A                        
Sbjct: 61  YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKAAVGENPADVFTEETTKNKKRSRRT 120

Query: 121 EEVAPIANFSQETEEE---------------SIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           ++ A     + + E +               +  ++ +++     +          +K  
Sbjct: 121 KKNAKNNVIAADVENDIASESVTIDHTEEILNADASYDEIEMVGAEDIREELPTYQRKQG 180

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN
Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP
Sbjct: 241 VQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAP 300

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            LV+EE NLIKR+IRDLY K+ISEI+VSG++GYREAKDFM++LMPS+A++V+ Y DP PI
Sbjct: 301 CLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPTPI 360

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R+ IE+QLD + Q +V+L S GY++INQTEALV+IDVNSGRST+E  +E TALQTNLE
Sbjct: 361 FARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLE 420

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQLRLRDLAGLIV+DFIDM E++N R VEKKLK+ LK DRAR+QVG IS+FGLL
Sbjct: 421 AAEEVARQLRLRDLAGLIVIDFIDMLEERNVRLVEKKLKDCLKNDRARIQVGHISHFGLL 480

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL  + +NIIV T  
Sbjct: 481 EMSRQRIRISVLESTTQPCPHCAGTGSIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPV 540

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
              LY+LN KR  +V  EARF ++I++     +  +   I +G+  +++           
Sbjct: 541 ATALYVLNHKRNILVNLEARFKLNISIEADDSIGTQHLVISRGTIAESISQ--------- 591

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
              S++ + +   +D   +     E+    + N           ++RRR+ R    TDH 
Sbjct: 592 --SSFEDDNKQEIEDSVFIKSESLENSPPTETN-----------QKRRRKNRHDEMTDHS 638

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL---------LENGAHGFTENYDVSIPP 696
            + +     ++ +                N +           E       +        
Sbjct: 639 LSAIDKKEDTLSDDSYRRGRRRGRRGGRRNQDNSFHQIRVPYAEPVGDFAKQALAEIKAA 698

Query: 697 VSTPEMESSNSSSDPIVKKT 716
                + S+ SS    +K  
Sbjct: 699 HRKRRVPSAKSSKLEEIKND 718



 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 1/151 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                   V    +A   D +++   +         +    +   N+  E+ T    ++ 
Sbjct: 716 KNDTQALAVQQQDEATKVDTSVKTKKRKTRSSKAVDNNLSLENDQNVAEEKPTNSSVRKI 775

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           + ++  +   +  D    +   S +     S          T   +         E+   
Sbjct: 776 KTKKAGKSVHEGEDKTPENGKKSTRRTRKKSSSKETTEIQKTLEAVSIMEVGEVIESSPS 835

Query: 693 SIPP-VSTPEMESSNSSSDPIVKKTRWWKRR 722
            I   ++ P + SS S+  P   +  WWKRR
Sbjct: 836 QIEKTINQPIVISSESNDAPKTARIGWWKRR 866


>gi|256113458|ref|ZP_05454299.1| ribonuclease Rne/Rng domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265994846|ref|ZP_06107403.1| ribonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|262765959|gb|EEZ11748.1| ribonuclease [Brucella melitensis bv. 3 str. Ether]
          Length = 891

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 373/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLI+VDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIIVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 44.6 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            +                 +  V  +E++  + ++    +      + E       R+ R
Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799

Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            R++        +A   ++    +     +     +P                    +  
Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             P ST  + +S+ S D   K++ WW+++
Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888


>gi|49474199|ref|YP_032241.1| ribonuclease E [Bartonella quintana str. Toulouse]
 gi|49239703|emb|CAF26079.1| Ribonuclease E [Bartonella quintana str. Toulouse]
          Length = 875

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 376/746 (50%), Positives = 466/746 (62%), Gaps = 24/746 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+  N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A          +   +         
Sbjct: 61  YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKASGGENHSDALIEETNKNKKRSRKT 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK---------------KFK 165
           ++       + + E   I  A     +        S + +                 +  
Sbjct: 121 KKDQKNKIMAADVENAIISDAITTDDAEEAFDSDISHDYIEMVGTEDVREELPTYQRRQG 180

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           RQY IQEVIK RQILLVQI+KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN
Sbjct: 181 RQYKIQEVIKRRQILLVQIIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYL RLWD VR L L S AP
Sbjct: 241 IQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLTRLWDTVRTLTLKSTAP 300

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            LV+EE NLIKR+IRDLY K+I+EI+VSG++GYREAKDFM++LMPS+A++V+ Y D  PI
Sbjct: 301 CLVHEESNLIKRSIRDLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDLIPI 360

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R+ IE+QLD +   +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLE
Sbjct: 361 FVRNNIEIQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLE 420

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEEIARQLRLRDLAGLIV+DFIDM E +N R VEKKLK+ LK DRAR+QVG IS+FGLL
Sbjct: 421 AAEEIARQLRLRDLAGLIVIDFIDMLEDRNVRMVEKKLKDCLKNDRARIQVGHISHFGLL 480

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL    +NIIV T  
Sbjct: 481 EMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNPQYNIIVRTPV 540

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
              LY+LN KR  +V  EARF ++I++     +  +   I KG+   A         +DS
Sbjct: 541 ATALYVLNHKRNILVNLEARFKLNISIEADDNIGTQHLIISKGTIAAAFSQPPLVFENDS 600

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           +    D  +      E   P+  +             +++     ++             
Sbjct: 601 KKEIKDAIVTESISTEDKTPVETNRRRRRKNRQDERNDNSLSTVYKKDDTLNDDSRRRGR 660

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES- 704
             G      + +N        Y EP        L        ++      P+   E+ES 
Sbjct: 661 HRGRRGGRGNQENNSYQICIPYAEPVGDFAKQTLVEIKAAHRKHRVPIAKPIEFEEVESD 720

Query: 705 --------SNSSSDPIVKKTRWWKRR 722
                     +     V K +  K R
Sbjct: 721 TQHLGIQQDETVKVDTVAKPKTRKVR 746


>gi|225627401|ref|ZP_03785438.1| ribonuclease, Rne/Rng family protein [Brucella ceti str. Cudo]
 gi|260168641|ref|ZP_05755452.1| ribonuclease, Rne/Rng domain protein [Brucella sp. F5/99]
 gi|261758115|ref|ZP_06001824.1| ribonuclease E and G [Brucella sp. F5/99]
 gi|225617406|gb|EEH14451.1| ribonuclease, Rne/Rng family protein [Brucella ceti str. Cudo]
 gi|261738099|gb|EEY26095.1| ribonuclease E and G [Brucella sp. F5/99]
          Length = 891

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 374/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+ TYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALATYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 44.6 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            +                 +  V  +E++  + ++    +      + E       R+ R
Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799

Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            R++        +A   ++    +     +     +P                    +  
Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             P ST  + +S+ S D   K++ WW+++
Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888


>gi|319898906|ref|YP_004158999.1| ribonuclease E [Bartonella clarridgeiae 73]
 gi|319402870|emb|CBI76421.1| ribonuclease E [Bartonella clarridgeiae 73]
          Length = 804

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 353/584 (60%), Positives = 432/584 (73%), Gaps = 12/584 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRVVV+ DN++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVVVVHDNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTD------------SEAVADDVT 108
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E      +            ++       
Sbjct: 61  YGGNRHGFLTFAEIHPDYYQIPVADRLALLEEEKAVINESYGDDPIEETIQNKKSLRKTK 120

Query: 109 HGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
                      +E          +  EE    +N+D+     +          +K   QY
Sbjct: 121 KDKSNSFMATDIENDIISETIIADDAEEIPDFSNDDIEMVGAEDALEELPTYRRKQGCQY 180

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            IQEVIK RQILL+Q++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN  D
Sbjct: 181 KIQEVIKRRQILLIQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQD 240

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           RK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L+
Sbjct: 241 RKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRALTLKSTAPCLI 300

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           +EE NLIKR+IRDLY KDI+EI+V+G++GYREAKDFM++LMPS+A++V+ Y +P PIF  
Sbjct: 301 HEESNLIKRSIRDLYSKDINEILVAGDQGYREAKDFMRMLMPSHAKVVQPYRNPIPIFAH 360

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
           + IE QLD +   +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAE
Sbjct: 361 NDIETQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAE 420

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           EIARQLRLRDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+EMS
Sbjct: 421 EIARQLRLRDLAGLIVIDFIDMLETRNIKLVEKKLKDCLKNDRARIQVGHISHFGLMEMS 480

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           RQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL+ + +NIIV T     
Sbjct: 481 RQRIRVSVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLRNSQYNIIVRTSVATA 540

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           LY+LN KR  +V  E RFG+SIN+     +  +   I KGS  +
Sbjct: 541 LYVLNHKRNILVNLETRFGLSINIEADDSIGTQHLAISKGSIAK 584


>gi|306840410|ref|ZP_07473173.1| ribonuclease, Rne/Rng family [Brucella sp. BO2]
 gi|306289610|gb|EFM60819.1| ribonuclease, Rne/Rng family [Brucella sp. BO2]
          Length = 922

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKNDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDVISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 1/131 (0%)

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           K  +   +  A       E+ E++      E+     RK R R++    A     A    
Sbjct: 790 KPEKPARKPRARKTAKTEEAAEEVIAAEAEEKPEKPARKTRARKKAVDEAPATEAAAPAE 849

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
           +    +              +  +   ++       +   V+ P  + P + SS S    
Sbjct: 850 EAVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAEAQVETVAEPKSTEPVVTSSESEEQK 909

Query: 712 IVKKTRWWKRR 722
             K++ WW+++
Sbjct: 910 -PKRSGWWQKK 919


>gi|254719015|ref|ZP_05180826.1| ribonuclease Rne/Rng domain-containing protein [Brucella sp. 83/13]
 gi|265984005|ref|ZP_06096740.1| ribonuclease [Brucella sp. 83/13]
 gi|306840098|ref|ZP_07472884.1| ribonuclease, Rne/Rng family [Brucella sp. NF 2653]
 gi|264662597|gb|EEZ32858.1| ribonuclease [Brucella sp. 83/13]
 gi|306404826|gb|EFM61119.1| ribonuclease, Rne/Rng family [Brucella sp. NF 2653]
          Length = 922

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 375/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D    ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRGERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRHRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDVISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 44.6 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V       + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEVPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++ +  +     +     +P
Sbjct: 808 EAAEAVIAAEAEEKPEKPARKTRARKKAVEEAPADEAAAPAEEAVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAEAQVETVAEPKSTEPVVTSSESEDQKPKRSGWWQKK 919


>gi|288957372|ref|YP_003447713.1| ribonuclease E [Azospirillum sp. B510]
 gi|288909680|dbj|BAI71169.1| ribonuclease E [Azospirillum sp. B510]
          Length = 1047

 Score =  477 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 304/623 (48%), Positives = 400/623 (64%), Gaps = 31/623 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +ML+DA+H EETRV V+  NR+EELDFE   +KQ+KGNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MAKRMLVDATHPEETRVAVVSGNRLEELDFEIASRKQLKGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDS--------------EAVADD 106
           YGGNRHGFL F EIHPDYY+IP +DR+ALL E    +  +              E +  +
Sbjct: 61  YGGNRHGFLAFSEIHPDYYRIPMADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPE 120

Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV----------------E 150
               + +        E +  A   +   E++                            +
Sbjct: 121 QVVEEWSPMPSPIAAEASDEAGDEENGGEDAAEEGETGEERAAPGAAAQPAEAPDMVGGD 180

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           + +    +    +  R Y IQEV+K RQ++LVQ+ KEERGNKGAA+TTYLSL GRY VLM
Sbjct: 181 EDEEAETQRRRSRPLRSYKIQEVVKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVLM 240

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PNT +G  ISRKITNP DRK LKEI   L++P GM VILRTAG  R+K EIKRD EYL+R
Sbjct: 241 PNTGRGGGISRKITNPADRKRLKEILSDLDIPDGMAVILRTAGLERSKPEIKRDLEYLLR 300

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LWD++RE  L S AP L+YEE NLIKR+IRDLY  DI EI V GE G+R A++FM +LMP
Sbjct: 301 LWDDIREQTLKSSAPCLIYEEANLIKRSIRDLYSNDIDEIWVEGEAGFRTAREFMDMLMP 360

Query: 331 SYA-RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
            ++ R+    +   P+F R  +E Q+D++H   V L S GY++IN TEALVSIDVNSG+S
Sbjct: 361 GHSQRVQLYRDSQIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGKS 420

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TRE  IE+TA +TNLEAA+E+ARQLRLRDLAGLIV+DFIDMEE +NN +VE+++KE++K 
Sbjct: 421 TRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRMKEAMKN 480

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLE+SRQR+R S+LE+  + C +C G G +RS  S +L +LR++EE
Sbjct: 481 DRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVVRSVESASLHVLRAIEE 540

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++  +  I ++  + + LY+LNQKR  + + E R   S+ V     L      +E+  
Sbjct: 541 EGIRKRSAEISIYVPTSIALYILNQKRGELAKIEERHAFSVMVQADDSLIAPDHRLERNK 600

Query: 570 PVQALVNTGHKVGSDSQAPSYDK 592
                 +          A +   
Sbjct: 601 ARLPDEDGPLVSADRVMAETDRA 623


>gi|328543668|ref|YP_004303777.1| ribonuclease E [polymorphum gilvum SL003B-26A1]
 gi|326413412|gb|ADZ70475.1| Ribonuclease E [Polymorphum gilvum SL003B-26A1]
          Length = 823

 Score =  477 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 370/671 (55%), Positives = 454/671 (67%), Gaps = 3/671 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MANKMLIDAAHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL   +    +    A +         +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALLD--DERDEEERQEAAEAKAAARRKVSAPKA 118

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +      N       +      + V S   +       +   + +RQY IQEVIK RQ+L
Sbjct: 119 DAGENGDNGENGENGDEEDDDEDHVESVGAEDAMEEVPERRPRQRRQYKIQEVIKRRQVL 178

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT +G  ISRKIT P DRK LK+IA  LE
Sbjct: 179 LVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITQPTDRKRLKKIASELE 238

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMGVILRTAGASRTK EIKRDFEYLMRLW+NVR+L L S AP LVYEEG+LIKR+IR
Sbjct: 239 VPDGMGVILRTAGASRTKAEIKRDFEYLMRLWENVRDLTLKSSAPCLVYEEGSLIKRSIR 298

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLY KDI E++V+G++GYREAKDFM++LMPS+A+ V+ Y D  PIF + G+E QLD++  
Sbjct: 299 DLYNKDIDEVLVAGDEGYREAKDFMRMLMPSHAKNVQPYRDATPIFTKFGVEPQLDAMFS 358

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             VTL S GY++INQTEALVSIDVNSG+STREH IEDTALQTNLEAAEE+ RQLRLRDLA
Sbjct: 359 PHVTLKSGGYIVINQTEALVSIDVNSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLA 418

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDMEE KNNR+VE+KLK+ LK DRAR+QVG IS+FGLLEMSRQRIR+ VLES+
Sbjct: 419 GLIVIDFIDMEENKNNRTVERKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRTGVLESS 478

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T VC +C G+G IRS  SVAL +LRS+E++LL+   HN+IV T +   LY+LNQKR  + 
Sbjct: 479 TSVCPHCHGSGMIRSVESVALHVLRSLEDFLLKGVTHNVIVRTTTAAALYILNQKRRNLA 538

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQA-LVNTGHKVGSDSQAPSYDKNIECVWQ 599
           + EARFG+ I V     L  + + +E+ S +    V     V  D+      + +E V +
Sbjct: 539 DLEARFGLEIAVQADEMLNGQHYVLERSSLIDRDKVPAPAIVQPDTVVLEEIEEVEEVEE 598

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            +      +    E  +      +            R  +                 +  
Sbjct: 599 VDEEGDAEERAQDEGERRRRRRRKRKRTPDGAGSTERAAQAVGGSDAEQASGAEDDDETD 658

Query: 660 IDDSFDMYMEP 670
            + S     EP
Sbjct: 659 EETSEQAGEEP 669


>gi|46201699|ref|ZP_00054508.2| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum
           MS-1]
          Length = 836

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 316/671 (47%), Positives = 420/671 (62%), Gaps = 20/671 (2%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+   R+EELD E+  K+Q+KGNIYLAKV RVEPSLQAAFV+YGGN
Sbjct: 1   MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIA--QTDSEAVADDVTHGDVTIPNDHSLEE 122
           RHGFL F EIHPDY+QIP +DRQALL        +  +    D    G+  +  +   E+
Sbjct: 61  RHGFLAFSEIHPDYFQIPVADRQALLAAQRAEVMREATNDRDDAEPVGEGHLAAEAVAEQ 120

Query: 123 VAPIANFSQETEE--------------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
                     +E               ++  S     V  V        E    +  R Y
Sbjct: 121 TDGSTVEDAPSETGENGENGENGESGSDNGRSQRKRNVETVGGDDDVENERRRARLLRNY 180

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  +SRKI +  D
Sbjct: 181 KIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATD 240

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           R+ LK IA  +++P GM VI+RTAG+ R+K EIKRD+EYL+R+WD+VREL L S AP LV
Sbjct: 241 RRRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALV 300

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI-VRQYEDPHPIFF 347
           YEE +LIKR+IRDLY +DI E++V G++GYR AKD+M++L PS+A+      +   P+F 
Sbjct: 301 YEEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPYKDPVMPMFH 360

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
           R  +E QLD++H   V L S GY++I+QTEALV+IDVNSGR+T+E  IE+TAL+TN+EAA
Sbjct: 361 RYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAA 420

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           +E+ARQLRLRDLAGLIV+DFIDMEE +NN +VE++LKE+LK DRAR+QVG IS FGLLE+
Sbjct: 421 DEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARIQVGKISAFGLLEL 480

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           SRQR+R S+ E+T   C +C G G +RS  S A+ ILR++EE  ++  +  + V+  S +
Sbjct: 481 SRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEVTVYVSSAI 540

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
            LY+LNQKR+ +   E R+   + +     L    F ++K               S   A
Sbjct: 541 ALYILNQKRSALAAIEERYEFDVFLSGDDTLIPPAFRMDKVKAEFRPDEPARTAISMDDA 600

Query: 588 ---PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
              P  +   +    ++      + E     +D    E+           R+RRR     
Sbjct: 601 VHRPPAEPEADEAEPEDEEEVEARPERAPRARDERPREDRGEEDPDSEAGRKRRRRRRRR 660

Query: 645 HDAGVVSDVSS 655
              G      +
Sbjct: 661 RKPGDDRPEQA 671


>gi|148556749|ref|YP_001264331.1| RNAse E [Sphingomonas wittichii RW1]
 gi|148501939|gb|ABQ70193.1| RNAse E [Sphingomonas wittichii RW1]
          Length = 880

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 337/714 (47%), Positives = 426/714 (59%), Gaps = 11/714 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA H EETRV V++ NR+EE DFES  +KQ+KGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MTTRMLIDARHREETRVAVVQGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP  DR+ALL+E      + EA+       D         
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEEALRAREAEHDDDGEEIEDD 120

Query: 121 EEVAPIANFSQETEEES---IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177
                  +   E  E       +    V    +D    +        +R+Y IQ+VI+ R
Sbjct: 121 GHDHHDDHDHDEDGEGGEERPRARRESVGGGSDDGAVENLRQRRMNLRRRYKIQDVIRRR 180

Query: 178 QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIAR 237
           Q+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK I  
Sbjct: 181 QVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIMA 240

Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
            L +P  MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L S AP L+Y + +LIKR
Sbjct: 241 ELNLPKTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLGSQAPALIYGDSDLIKR 300

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
           AIRD+Y +DI E++V GE+GYR+A+ FMKLLMPS+A+ V  Y D  P+F R G+E QL +
Sbjct: 301 AIRDIYNRDIDEVVVEGEEGYRQARAFMKLLMPSHAKKVGLYADAVPLFQRFGVEDQLAA 360

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           ++Q  V L S GY++IN TEALVSID+NSGRSTREH IE TA  TNLEAA EIARQLRLR
Sbjct: 361 MYQPIVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAHEIARQLRLR 420

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           D+AGLIV+DFIDME   N R VEK +KE+LK DRAR+QVG IS+FGL EMSRQR+R+ VL
Sbjct: 421 DMAGLIVIDFIDMENNSNIRKVEKAMKEALKNDRARIQVGRISSFGLFEMSRQRLRTGVL 480

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E++T+ C +C+G G IR+ SS  LS LR +E+   +     +++    +   Y+LN+KRA
Sbjct: 481 EASTRQCPHCEGTGLIRTASSAGLSALRMLEDEAARGRGSRLLLRASQEAAFYVLNRKRA 540

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            + E E R+GV I +V    L      +E G P  +                 ++ IE  
Sbjct: 541 ELAEIEERYGVVIEIVSDGTLEGARMSVEAGGPPPSHAPRLPAPLPIEADDDIEEEIEDE 600

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            ++E        E  E    N            R R +  +  A    +AG   +     
Sbjct: 601 EEEEIAAEDEGQEDGERGDGNRRRRRRRRRRGGRGRDQDGQGEAGQADEAGETDEADEPS 660

Query: 658 NVIDDSFDMYMEPSD--------ITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              +++                  +       GA    E  + +  P+S P  E
Sbjct: 661 EEAEEAAAEDGSAEPRGRRRRGRRSGRRRSGEGAETEGEAIEQAEAPLSEPVAE 714


>gi|148560585|ref|YP_001258889.1| ribonuclease Rne/Rng domain-containing protein [Brucella ovis ATCC
           25840]
 gi|148371842|gb|ABQ61821.1| ribonuclease, Rne/Rng domain protein [Brucella ovis ATCC 25840]
          Length = 891

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 374/664 (56%), Positives = 455/664 (68%), Gaps = 46/664 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALL------------KESNIAQTDSEAVADDVT 108
           YGGNRHGFL F EIHPDYYQIP +DR ALL            ++   A++D     D   
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 109 HGDVTIPNDHSLEEVAPIANFSQETEEE-------------------------------- 136
                  +  + E  A  A+      E                                 
Sbjct: 121 RRRGGRRDGQNGEAQANDADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDNGD 180

Query: 137 --SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194
              + +  + V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNKGA
Sbjct: 181 DDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNKGA 240

Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254
           A+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTAGA
Sbjct: 241 ALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTAGA 300

Query: 255 SRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314
           +RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+VSG
Sbjct: 301 NRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILVSG 360

Query: 315 EKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIIN 374
           E GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+IIN
Sbjct: 361 ENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLIIN 420

Query: 375 QTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434
           QTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEEK+
Sbjct: 421 QTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEEKR 480

Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494
           NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ R
Sbjct: 481 NNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGHTR 540

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
           S SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++  
Sbjct: 541 SDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISIDA 600

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              + ++ F I+KG+P    V          +    D  I     +         ++ E+
Sbjct: 601 DESVGNQHFVIDKGAPSTCPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAGEE 660

Query: 615 IQDN 618
             + 
Sbjct: 661 RSEE 664



 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 35/105 (33%)

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
              +EE      ++ R R++        +A   ++    +     +     +P       
Sbjct: 784 TAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDV 843

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                        +    P ST  + +S+ S D   K++ WW+++
Sbjct: 844 AEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 888


>gi|254710013|ref|ZP_05171824.1| ribonuclease Rne/Rng domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|254714015|ref|ZP_05175826.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716927|ref|ZP_05178738.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti
           M13/05/1]
 gi|256031508|ref|ZP_05445122.1| ribonuclease Rne/Rng domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|256159633|ref|ZP_05457395.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti
           M490/95/1]
 gi|256254913|ref|ZP_05460449.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti
           B1/94]
 gi|256369340|ref|YP_003106848.1| ribonuclease, Rne/Rng domain protein [Brucella microti CCM 4915]
 gi|261218733|ref|ZP_05933014.1| ribonuclease [Brucella ceti M13/05/1]
 gi|261222095|ref|ZP_05936376.1| ribonuclease [Brucella ceti B1/94]
 gi|261317561|ref|ZP_05956758.1| ribonuclease [Brucella pinnipedialis B2/94]
 gi|261321769|ref|ZP_05960966.1| ribonuclease [Brucella ceti M644/93/1]
 gi|265988595|ref|ZP_06101152.1| ribonuclease [Brucella pinnipedialis M292/94/1]
 gi|265998060|ref|ZP_06110617.1| ribonuclease [Brucella ceti M490/95/1]
 gi|255999500|gb|ACU47899.1| ribonuclease, Rne/Rng domain protein [Brucella microti CCM 4915]
 gi|260920679|gb|EEX87332.1| ribonuclease [Brucella ceti B1/94]
 gi|260923822|gb|EEX90390.1| ribonuclease [Brucella ceti M13/05/1]
 gi|261294459|gb|EEX97955.1| ribonuclease [Brucella ceti M644/93/1]
 gi|261296784|gb|EEY00281.1| ribonuclease [Brucella pinnipedialis B2/94]
 gi|262552528|gb|EEZ08518.1| ribonuclease [Brucella ceti M490/95/1]
 gi|264660792|gb|EEZ31053.1| ribonuclease [Brucella pinnipedialis M292/94/1]
          Length = 922

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919


>gi|294852266|ref|ZP_06792939.1| ribonuclease Rne/Rng domain-containing protein [Brucella sp. NVSL
           07-0026]
 gi|294820855|gb|EFG37854.1| ribonuclease Rne/Rng domain-containing protein [Brucella sp. NVSL
           07-0026]
          Length = 922

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 374/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLV++VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVRVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYHDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919


>gi|239831791|ref|ZP_04680120.1| ribonuclease, Rne/Rng family [Ochrobactrum intermedium LMG 3301]
 gi|239824058|gb|EEQ95626.1| ribonuclease, Rne/Rng family [Ochrobactrum intermedium LMG 3301]
          Length = 931

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 376/750 (50%), Positives = 467/750 (62%), Gaps = 50/750 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     + +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSERSERNDRND 120

Query: 121 EEVAPIANFSQETEEESIISANNDV----------------------------------- 145
                     ++ +     +  +D                                    
Sbjct: 121 RSRRNRRRGRRDGQNGDAQANASDNGLPAAEPVGPAFENYVPGTPAMALSQKSDVISEAL 180

Query: 146 ---------------VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190
                           S   +          +  +RQY IQEVIK RQILLVQ+VKEERG
Sbjct: 181 DNGDEDDIEHEEDMVESVGSEDALEELPTHARTNRRQYNIQEVIKRRQILLVQVVKEERG 240

Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250
           NKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILR
Sbjct: 241 NKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILR 300

Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310
           TAGA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISEI
Sbjct: 301 TAGANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDISEI 360

Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
           +VSGE GYREAKDFM++LMPS+A++V+ Y +  PIF R+G+E QLD +   +VTL S GY
Sbjct: 361 LVSGENGYREAKDFMRMLMPSHAKVVQPYREQVPIFTRNGVEAQLDRMLLPQVTLKSGGY 420

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           +IINQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDM
Sbjct: 421 LIINQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDM 480

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
           EEK+NNR+VEKK+K+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G 
Sbjct: 481 EEKRNNRAVEKKMKDCLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGT 540

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
           G+IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV+I
Sbjct: 541 GHIRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPASSALYVLNHKRQLLADLEGRFGVAI 600

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           ++     +  + F I+KG+P    +               +     V +DEA        
Sbjct: 601 SIDADESVGYQHFVIDKGAPSTRPITQPPVQPMAYIEDDIEDPEIPVDEDEAEEETKADV 660

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              + +      +     R+R  R R  +  +   D+          +  +         
Sbjct: 661 QASEERGEEGDRKRRRRRRRRGGRDREGQEQSAKSDSVSEESSDEDDDADESQQTSSNAS 720

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTP 700
               +                    P +  
Sbjct: 721 LSEEDRRKKRRRGRRGGRKNRRDDEPRARK 750



 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 58/178 (32%), Gaps = 8/178 (4%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           V   E      +  ++    V   +       +   A +    +E V +++   P  K  
Sbjct: 751 VPDPEFVGYTPVLPVKIEETVVEEIAAVAVEPAAEAAETPAPAVEPVAEEKPAKPARKPR 810

Query: 611 SLEDIQDNIVSEEST------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +  +    +EE           +  R+ R R++   +     V  + +       +  
Sbjct: 811 ARKSAKTEDAAEEVVAAEAEEKPAKPARKTRARKKAVEEAPAEPVAVEATDEPEAEAEKP 870

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                 +       +E+      +   ++ P  +   + +S+ S +   K+  WW+++
Sbjct: 871 KRRTRRAAAKPAAEVEDTVAIEADVATIAEPEKNAEPVVTSSESEEQKPKRAGWWQKK 928


>gi|295689556|ref|YP_003593249.1| ribonuclease, Rne/Rng family [Caulobacter segnis ATCC 21756]
 gi|295431459|gb|ADG10631.1| ribonuclease, Rne/Rng family [Caulobacter segnis ATCC 21756]
          Length = 907

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 315/584 (53%), Positives = 410/584 (70%), Gaps = 24/584 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLIDA+H EETRVVV+   RVEE DFES+ +KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL+++ +    D                     
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDD-------------------- 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
               PI+  +   ++E  ++  +  + + ED          ++  R+Y IQEVI+ RQI+
Sbjct: 101 ---TPISRRATGGDDEDDVNGEDTAIDDDEDDVEEELARRKRRLMRKYKIQEVIRRRQIM 157

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKIT   DRK LK + + L+
Sbjct: 158 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLD 217

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+N+RE  L+S+AP L+YEE +L+KRAIR
Sbjct: 218 VPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIR 277

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y KD+  I V G+ GY+EA+DFM++LMPS A+ V  Y DP P+F ++ IE  L  ++ 
Sbjct: 278 DMYDKDLDGIWVEGDAGYKEARDFMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYS 337

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSG++TRE  IE TAL+TN EAAEE ARQLRLRDLA
Sbjct: 338 PVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLA 397

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM+E KNNR+VEK LK++LK DRAR+Q+G IS FGL+E+SRQR R+ VLE T
Sbjct: 398 GLIVIDFIDMDEAKNNRTVEKVLKDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGT 457

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T VC +C+G G +RS  S AL+ LR+VE   L+  + ++I+     V LY+LN+KRA + 
Sbjct: 458 THVCEHCEGTGRVRSVESSALAALRAVEVEALKG-SGSVILKVSRSVGLYILNEKRAYLQ 516

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
                 G+ + VV+   L      IE+    + +         +
Sbjct: 517 RLLETHGLFVTVVVDDSLHAADQEIERTELGERIAVAPAPYVDE 560


>gi|62289855|ref|YP_221648.1| ribonuclease Rne/Rng domain-containing protein [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699781|ref|YP_414355.1| ribonuclease E and G [Brucella melitensis biovar Abortus 2308]
 gi|189024097|ref|YP_001934865.1| Ribonuclease E and G [Brucella abortus S19]
 gi|237815344|ref|ZP_04594342.1| ribonuclease, Rne/Rng family [Brucella abortus str. 2308 A]
 gi|254689161|ref|ZP_05152415.1| Ribonuclease E and G [Brucella abortus bv. 6 str. 870]
 gi|254697296|ref|ZP_05159124.1| Ribonuclease E and G [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730194|ref|ZP_05188772.1| Ribonuclease E and G [Brucella abortus bv. 4 str. 292]
 gi|256257411|ref|ZP_05462947.1| Ribonuclease E and G [Brucella abortus bv. 9 str. C68]
 gi|260545397|ref|ZP_05821138.1| ribonuclease E and G [Brucella abortus NCTC 8038]
 gi|260754660|ref|ZP_05867008.1| ribonuclease [Brucella abortus bv. 6 str. 870]
 gi|260757883|ref|ZP_05870231.1| ribonuclease [Brucella abortus bv. 4 str. 292]
 gi|260761706|ref|ZP_05874049.1| ribonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883686|ref|ZP_05895300.1| ribonuclease [Brucella abortus bv. 9 str. C68]
 gi|297248260|ref|ZP_06931978.1| ribonuclease Rne/Rng domain-containing protein [Brucella abortus
           bv. 5 str. B3196]
 gi|62195987|gb|AAX74287.1| ribonuclease, Rne/Rng domain protein [Brucella abortus bv. 1 str.
           9-941]
 gi|82615882|emb|CAJ10886.1| Ribonuclease E and G [Brucella melitensis biovar Abortus 2308]
 gi|189019669|gb|ACD72391.1| Ribonuclease E and G [Brucella abortus S19]
 gi|237790181|gb|EEP64391.1| ribonuclease, Rne/Rng family [Brucella abortus str. 2308 A]
 gi|260096804|gb|EEW80679.1| ribonuclease E and G [Brucella abortus NCTC 8038]
 gi|260668201|gb|EEX55141.1| ribonuclease [Brucella abortus bv. 4 str. 292]
 gi|260672138|gb|EEX58959.1| ribonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674768|gb|EEX61589.1| ribonuclease [Brucella abortus bv. 6 str. 870]
 gi|260873214|gb|EEX80283.1| ribonuclease [Brucella abortus bv. 9 str. C68]
 gi|297175429|gb|EFH34776.1| ribonuclease Rne/Rng domain-containing protein [Brucella abortus
           bv. 5 str. B3196]
          Length = 922

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 374/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919


>gi|153009598|ref|YP_001370813.1| ribonuclease [Ochrobactrum anthropi ATCC 49188]
 gi|151561486|gb|ABS14984.1| ribonuclease, Rne/Rng family [Ochrobactrum anthropi ATCC 49188]
          Length = 926

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 369/678 (54%), Positives = 460/678 (67%), Gaps = 59/678 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     + +  +D + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSERSERSDRND 120

Query: 121 EEVAPIANFSQETEEESIISANNDV----------------------------------- 145
                     ++ +     +   D                                    
Sbjct: 121 RSRRNRRRGRRDGQNGDAQANAADKGLPAAEPVGPAFENYVPGTPAMALSQKSDVISEAL 180

Query: 146 ---------------VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190
                           S   +          +  +RQY IQEVIK RQILLVQ+VKEERG
Sbjct: 181 DNGDEDDIEHEEDMVESVGSEDALEELPTPARTNRRQYNIQEVIKRRQILLVQVVKEERG 240

Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250
           NKGAA+TTYLSLAGRYSVLMPNT++G  ISRKIT P DRK LKEI + LEVP GMGVILR
Sbjct: 241 NKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPQDRKRLKEIVKELEVPQGMGVILR 300

Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310
           TAGA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI
Sbjct: 301 TAGANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPSLVYEEGSLIKRSIRDLYNKDITEI 360

Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
           +VSGE GYREAKDFM++LMPS+A++V+ Y +  PIF R+G+E QLD +   +VTL S GY
Sbjct: 361 LVSGENGYREAKDFMRMLMPSHAKVVQPYREQVPIFTRNGVEAQLDRMLLPQVTLKSGGY 420

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           +IINQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDM
Sbjct: 421 LIINQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDM 480

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
           EEK+NNR+VEKK+K+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G 
Sbjct: 481 EEKRNNRAVEKKMKDCLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCQHCGGT 540

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
           G++RS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV+I
Sbjct: 541 GHVRSDSSMALHIIRGIEDYLLRHSGFDINVRTPAASALYVLNHKRQLLADLEGRFGVAI 600

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           ++     +  + F I+KG+P    +         +Q P           ++  +P+ + E
Sbjct: 601 SIDADESVGHQHFVIDKGAPSTRPI---------TQPPVQPMAYIEDDIEDPEIPVDEDE 651

Query: 611 SLEDIQDNIVSEESTGVI 628
           + E+   ++ + E  G  
Sbjct: 652 AEEEATADVQAREDRGDE 669



 Score = 49.2 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 5/146 (3%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                    +A + +K  +   +  A       E+ ED+      E+     RK R R++
Sbjct: 783 AAEVAVPAIEATAEEKPAKTARKPRARKSAKTEEAAEDVVVAEAEEKPAKPARKTRSRKK 842

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
               A     A      +  +     +     +P+      +              S  P
Sbjct: 843 VAEEAPAEPVAVTEEPEAEAEKPKRRTRRAAAKPAVEVEETVAVEAEVATIAEPQKSAEP 902

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722
           V T     S+ S D   K+  WW+++
Sbjct: 903 VVT-----SSESEDQKPKRAGWWQKK 923


>gi|254701676|ref|ZP_05163504.1| ribonuclease Rne/Rng domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261752228|ref|ZP_05995937.1| ribonuclease [Brucella suis bv. 5 str. 513]
 gi|261741981|gb|EEY29907.1| ribonuclease [Brucella suis bv. 5 str. 513]
          Length = 922

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTSAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919


>gi|254693644|ref|ZP_05155472.1| Ribonuclease E and G [Brucella abortus bv. 3 str. Tulya]
 gi|261213910|ref|ZP_05928191.1| ribonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|260915517|gb|EEX82378.1| ribonuclease [Brucella abortus bv. 3 str. Tulya]
          Length = 922

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 373/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E      + D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGTDKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919


>gi|306843811|ref|ZP_07476409.1| ribonuclease, Rne/Rng family [Brucella sp. BO1]
 gi|306275889|gb|EFM57605.1| ribonuclease, Rne/Rng family [Brucella sp. BO1]
          Length = 922

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDVISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPPHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GMGVILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 1/152 (0%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +A+           +A   +K  +   +          E+ E++      E+     RK
Sbjct: 769 GEAVETVETVEAPVVEAAPEEKPEKPARKPRTRKTAKTEEAAEEVITAEAEEKPEKPARK 828

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            R R++    A    +A   ++    +     +     +P                    
Sbjct: 829 TRARKKAVEEAP-ADEAVAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEMKETVAAEAQV 887

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +    P ST  + +S+ S D   K++ WW+++
Sbjct: 888 ETIAEPKSTEPVVTSSESEDQKPKRSGWWQKK 919


>gi|23501798|ref|NP_697925.1| ribonuclease Rne/Rng domain-containing protein [Brucella suis 1330]
 gi|23347730|gb|AAN29840.1| ribonuclease, Rne/Rng domain protein [Brucella suis 1330]
          Length = 922

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 374/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GM VILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMSVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAATPAEEVVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919


>gi|83593484|ref|YP_427236.1| RNAse E [Rhodospirillum rubrum ATCC 11170]
 gi|83576398|gb|ABC22949.1| RNAse E [Rhodospirillum rubrum ATCC 11170]
          Length = 889

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 309/697 (44%), Positives = 426/697 (61%), Gaps = 39/697 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA+H EETRVVVL   R++E D E+  KKQ+KGNIYLAKV RVEPSLQAAFV+
Sbjct: 1   MTKRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ L+ E  +     +    D          + S 
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSA 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                                     +  R Y IQEVIK RQI+
Sbjct: 121 PAP-----------------------------------RAKSRVSRSYKIQEVIKRRQIM 145

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY V MPNT++G  +SRKIT+  DRK LK I   L 
Sbjct: 146 LVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGGGVSRKITSATDRKRLKSIMGELI 205

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G  VILRTAG+ R++ EI+RD +YL+R WD++R+  L S AP L++EEG+LIKRAIR
Sbjct: 206 GPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQTTLASRAPCLIHEEGSLIKRAIR 265

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSGIEVQLDSLH 359
           D+Y +DI EI+V G+ GYR AKDFMK+L PS+A+ V+ Y+D     F R  +E Q+D++H
Sbjct: 266 DIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKKVQPYKDEIMPLFHRYQVESQMDAMH 325

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
                L S GY++INQTEALV+IDVNSGRSTRE  IE+TA +TNLEAA+EIARQLRLRDL
Sbjct: 326 SPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNIEETAYKTNLEAADEIARQLRLRDL 385

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           +GLIV+DFIDM++ ++N +VE+++K++L+ DRAR+Q+G IS+FGLLEMSRQR+R S++E+
Sbjct: 386 SGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQLGRISHFGLLEMSRQRLRPSLMET 445

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           + + C +C G+G +RS  S A+ ILR +EE  ++  +  + V   + + LY+LN KR  +
Sbjct: 446 SFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRRSSEVTVTVPTAIALYILNNKRTVL 505

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
              EAR+   + ++    L    + +++    +  ++          AP        V +
Sbjct: 506 AAIEARYDFQVFLLGDDTLIVPDYRMDRVKAEREGLDALPAAAPPPTAPVAALPAPEVLE 565

Query: 600 DEALLPIPKSESL---EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
           DE        +     E+ Q+   ++      R+RRRRRR+ +   +   + V  +  + 
Sbjct: 566 DEDEDEGTVEDEAFAEENGQNGADADGQGRKRRRRRRRRRKDQDGVEIEGSSVDDEEGAP 625

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           +   D + D   +    T     + G      +  +S
Sbjct: 626 EGTADSTEDEGADDEGETGDEAEDTGDELDPADGSLS 662


>gi|161618870|ref|YP_001592757.1| ribonuclease [Brucella canis ATCC 23365]
 gi|254704219|ref|ZP_05166047.1| ribonuclease [Brucella suis bv. 3 str. 686]
 gi|260566532|ref|ZP_05837002.1| ribonuclease E and G [Brucella suis bv. 4 str. 40]
 gi|261754887|ref|ZP_05998596.1| ribonuclease [Brucella suis bv. 3 str. 686]
 gi|161335681|gb|ABX61986.1| ribonuclease, Rne/Rng family [Brucella canis ATCC 23365]
 gi|260156050|gb|EEW91130.1| ribonuclease E and G [Brucella suis bv. 4 str. 40]
 gi|261744640|gb|EEY32566.1| ribonuclease [Brucella suis bv. 3 str. 686]
          Length = 922

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 374/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LKEI + LEVP GM VILRTA
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPRDRKRLKEIVKELEVPQGMSVILRTA 300

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V
Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
           SGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+I
Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE
Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+
Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I++
Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                + ++ F I+KG+P    V          +    D  I     +         ++ 
Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660

Query: 613 EDIQDN 618
           E+  + 
Sbjct: 661 EERSEE 666



 Score = 54.2 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 1/136 (0%)

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
           A   +K  +   +  A       E+ E +      E+     RK R R++    A    +
Sbjct: 785 AAPEEKPEKPARKPRARKTAKTEEAAEAVITAEAEEKPEKPARKTRTRKKAVDEAP-ADE 843

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
           A   ++    +     +     +P                    +    P ST  + +S+
Sbjct: 844 AATPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSS 903

Query: 707 SSSDPIVKKTRWWKRR 722
            S D   K++ WW+++
Sbjct: 904 ESEDRKPKRSGWWQKK 919


>gi|15965081|ref|NP_385434.1| ribonuclease E protein [Sinorhizobium meliloti 1021]
 gi|307315051|ref|ZP_07594636.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti BL225C]
 gi|15074260|emb|CAC45907.1| Probable ribonuclease E [Sinorhizobium meliloti 1021]
 gi|306898890|gb|EFN29540.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti BL225C]
          Length = 924

 Score =  469 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 394/695 (56%), Positives = 470/695 (67%), Gaps = 73/695 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVT------ 113
           YGGNRHGFL F EIHPDYYQIP +DRQALLK     A+ D +   D V            
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTV 120

Query: 114 ---------------------------------------IPNDHSLEEVAPIANFSQETE 134
                                                     +    E  P  +   +  
Sbjct: 121 AEVVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDGEGDKN 180

Query: 135 EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI------------------------ 170
           E + +   + +  +++  +    +D       +  I                        
Sbjct: 181 EMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPRKQ 240

Query: 171 ---QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
              QEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN  
Sbjct: 241 YRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQ 300

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           DRK LKEIARGL+VP GMGVILRTAGA+RTK+EIKRDFEYLMRLW+NVR L LNS AP L
Sbjct: 301 DRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCL 360

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           VYEEG+LIKR+IRDLY KDISEI+VSGE+GY+EAK FMK+LMPS+A++V+ Y D HPIF 
Sbjct: 361 VYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFS 420

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
           RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGRSTREH IEDTALQTNLEAA
Sbjct: 421 RSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAA 480

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           EE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG IS+FGLLEM
Sbjct: 481 EEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEM 540

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           SRQRIR+SVLEST + C +C G G+IRSQSSVAL +LR +EE+LL+ T H+I V T  D+
Sbjct: 541 SRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDI 600

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
            LYLLNQKR++I +YE RFGVSI +     +  + F I++G PV+  V     +  + + 
Sbjct: 601 ALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQILQFEPEP 660

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
              ++ +     DE  +    +E  +  +     +
Sbjct: 661 EDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQ 695



 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 37/152 (24%), Gaps = 1/152 (0%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
                     G    A    +      + E        E+  DI      E +    +  
Sbjct: 770 SRQDELAEAEGETGMAAEAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAAEEPKPA 829

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           + RR R++       A  V +V+                +       LE           
Sbjct: 830 KPRRSRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDL 889

Query: 692 VSIPPVSTPEMESSNSSSDPI-VKKTRWWKRR 722
            +I               +P   KK  WW+RR
Sbjct: 890 SAIATEPVVTSSKGEGEEEPTKPKKGGWWQRR 921


>gi|16126120|ref|NP_420684.1| ribonuclease, Rne/Rng family protein [Caulobacter crescentus CB15]
 gi|221234891|ref|YP_002517327.1| ribonuclease E [Caulobacter crescentus NA1000]
 gi|13423322|gb|AAK23852.1| ribonuclease, Rne/Rng family protein [Caulobacter crescentus CB15]
 gi|220964063|gb|ACL95419.1| ribonuclease E [Caulobacter crescentus NA1000]
          Length = 898

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 313/587 (53%), Positives = 410/587 (69%), Gaps = 24/587 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLIDA+H EETRVVV+   RVEE DFES+ +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL+++ +    D                     
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDD-------------------- 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
               PI+  +   ++E  ++  +  V + +D          ++  R+Y IQEVI+ RQI+
Sbjct: 101 ---TPISRRASGGDDEDDVNGGDRAVDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIM 157

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKIT   DRK LK + + L+
Sbjct: 158 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLD 217

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+N+RE  L+S+AP L+YEE +L+KRAIR
Sbjct: 218 VPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIR 277

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y KD+  I V G+ GY+EA+DFM++LMPS A+ V  Y DP P+F ++ IE  L  ++ 
Sbjct: 278 DMYDKDLDGIWVEGDAGYKEARDFMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYS 337

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSG++TRE  IE TAL+TN EAAEE ARQLRLRDLA
Sbjct: 338 PVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLA 397

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM+E KNNR+VEK LK++LK DRAR+Q+G IS FGL+E+SRQR R+ VLE T
Sbjct: 398 GLIVIDFIDMDEAKNNRTVEKVLKDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGT 457

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T VC +C+G G +RS  S AL+ LR+VE   L+  + ++I+     V LY+LN+KR  + 
Sbjct: 458 THVCEHCEGTGRVRSVESSALAALRAVEAEALKG-SGSVILKVSRSVGLYILNEKRDYLQ 516

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
                 G+ ++VV+   L      IE+    + +         +   
Sbjct: 517 RLLTTHGLFVSVVVDDSLHAGDQEIERTELGERIAVAPPPFVEEDDD 563


>gi|315499980|ref|YP_004088783.1| ribonuclease, rne/rng family [Asticcacaulis excentricus CB 48]
 gi|315417992|gb|ADU14632.1| ribonuclease, Rne/Rng family [Asticcacaulis excentricus CB 48]
          Length = 894

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 317/701 (45%), Positives = 427/701 (60%), Gaps = 36/701 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  MLIDA+H EETRVVVL  ++VEE DFES  +KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKTMLIDATHAEETRVVVLNGSKVEEFDFESHARKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ L+ E       +     +    +    +    
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREKLMAELAAQAAANGHDDAEDEDHEDDGDDLPDE 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E                                      +     ++Y IQEVIK RQIL
Sbjct: 121 E------------------------------------RRLRAHLIKRYKIQEVIKRRQIL 144

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LK +A+ L+
Sbjct: 145 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNGADRKRLKAVAQSLD 204

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RTK EIKRD++YL+R+W+N+RE  L S AP L+YEE +L+KRAIR
Sbjct: 205 VPQGMGLIVRTAGAKRTKTEIKRDYDYLLRVWENIRETTLRSNAPALIYEEEDLVKRAIR 264

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ KD   + V G +GY+ AKDFM+++MPS A+ ++ Y    P+F R GI+  L+ ++ 
Sbjct: 265 DLFDKDFDHVQVEGVEGYKSAKDFMRMIMPSQAKKIQLYNGGMPLFARHGIDDILNRIYS 324

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSG+ST+E  IE TAL+TNLEAAEE ARQ+RLRDLA
Sbjct: 325 PVVPLRSGGYLVINQTEALVAIDVNSGKSTKERNIEATALKTNLEAAEEAARQMRLRDLA 384

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GL+V+DFIDM+E KNNR+VEKKLK++L +DRAR+Q+G IS FGL+E+SRQR R+  LE T
Sbjct: 385 GLVVIDFIDMDESKNNRAVEKKLKDALSEDRARIQMGKISGFGLMEISRQRRRTGFLEGT 444

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T +C +C+G G +RS  S AL+ +R+++   +   A  I +     V LY+LN+K+  + 
Sbjct: 445 TVICPHCEGMGRVRSTDSSALAAMRAIDLEAMTNGAGAITIKLPQAVALYILNEKQVHLA 504

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           +    +G+ +NV I  +L    F I +      +  T             D + +    +
Sbjct: 505 KLRLEWGLKVNVEIDSDLNHAEFEIVRTVHADEVEFTPPPRPDPIIDLGPDPDYDEDEDE 564

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
           + +    ++   ED  D+  S+ +     +  RR RRRR      D     +  + +   
Sbjct: 565 DVIAIDEEAIEREDTDDDEASDRAEAREDREDRRGRRRRRRRGRQDNEPRVEADTAEAEA 624

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            DS     +     + +   N              P + P 
Sbjct: 625 SDSEADSEDEDGDEDGDFRRNRRRRRGRRGGRRNGPDARPR 665



 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 45/157 (28%), Gaps = 7/157 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E      A            +A +          + A++        + + + +    + 
Sbjct: 744 EDLRDQPAPKGKRPPRKRRGKAEAEASETVETIAEPAVMETAPEPVTDAVPEAVTETAAE 803

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF-DMYMEPSDITNHNLLENGAH 684
            V +  R+ R R++   +           +++  ++ +  ++ +EP        +     
Sbjct: 804 EVAKPARKSRSRKKKTDEPVAEVAAEPTLTVEPAVEPAPVEVMVEPVAEPAPEPVLESEP 863

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   +  P           ++ P   K  WW++
Sbjct: 864 LGGSFAPTAPEPDPAEI------NTPPAKPKRGWWRK 894


>gi|294084603|ref|YP_003551361.1| Rne/Rng family ribonuclease [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664176|gb|ADE39277.1| ribonuclease, Rne/Rng family [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 846

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 304/711 (42%), Positives = 432/711 (60%), Gaps = 43/711 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LIDA   EETRVV+L   R+E+ D+E+E++KQ+KGN+YLA+VTRVEPSLQAAFV+
Sbjct: 1   MTKRLLIDARQSEETRVVLLSGTRIEDFDYETENRKQLKGNVYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNR GFL F EIHPDYY+IP  DR+ALL        D +   D               
Sbjct: 61  YGGNRQGFLAFSEIHPDYYRIPIEDREALLAADKAEAQDEDNEKDAE------------- 107

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                  D +  V    G   +  P +  R+Y IQEVI  +QI+
Sbjct: 108 -----------------------DGLETVGGGDGDEDDIRPARKVRKYKIQEVISRKQIM 144

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN S+G  +SRKITN  DRK LK +  GL+
Sbjct: 145 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNNSRGGGVSRKITNVADRKRLKTVVGGLD 204

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P GM VI+RTAG+ RTK EI RD+ YL +LW+++RE  L S AP +++EEGNLIKR+IR
Sbjct: 205 IPDGMAVIVRTAGSKRTKTEIARDYAYLSKLWNDIRERTLESQAPCIIHEEGNLIKRSIR 264

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y  ++ EI+V GE+ Y+ A++ +K+L+PS+ + V+++ED  P+F    +E Q+D++H 
Sbjct: 265 DIYTSEVEEILVEGEEAYKAARNHIKMLIPSHVKKVKKHEDAIPLFQHYRVESQMDTIHS 324

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +VTL S GY++INQTEALV++DVNSGRSTRE  IE+TAL+TNLEAA+E+ARQLRLRDL+
Sbjct: 325 PQVTLKSGGYLVINQTEALVAVDVNSGRSTRERNIEETALKTNLEAADELARQLRLRDLS 384

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIVVDFIDMEE +N  +VE+++K++++ DRAR+Q+G+IS+FGLLEMSRQR+R S+ EST
Sbjct: 385 GLIVVDFIDMEENRNQNAVERRMKDAMRNDRARIQIGSISHFGLLEMSRQRLRLSINEST 444

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           + +C +C+G G +RS  + AL  LRS+E+   +     + +  H D+ L++LN KR  + 
Sbjct: 445 SDLCPHCEGTGRVRSVDTAALQTLRSIEDEAQKGKMDEMHITVHRDIALFILNHKRDALA 504

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGSDSQAPSYDKN 593
           E E+R+G++I ++    L    + IE+                      +++ + S   +
Sbjct: 505 ELESRYGITIMLLSDDTLISPEYRIERVGWQGKAPQQQNRRSPKPANNNNNNNSNSNRAD 564

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
            +    D A      S+S +D Q    + ++     + + +RRRR             + 
Sbjct: 565 NKDAKNDNASDTADASDSDDDAQTASEAGDNDATSDEDQPKRRRRGRRGGRRRRRRNGNE 624

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
           +      +         SD          A    +            +  S
Sbjct: 625 NGTNAENEGQTATSDAGSDNVASAEAATDAVSTADEAPAKKSRGRGRKATS 675


>gi|307294097|ref|ZP_07573941.1| ribonuclease, Rne/Rng family [Sphingobium chlorophenolicum L-1]
 gi|306880248|gb|EFN11465.1| ribonuclease, Rne/Rng family [Sphingobium chlorophenolicum L-1]
          Length = 894

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 321/594 (54%), Positives = 393/594 (66%), Gaps = 7/594 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA H EETRV V++ NR+EE DFES   KQ+KGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP  DR+ALL+E      +  A+  D    D     D  L
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPREDREALLREEREHAEEEAALRADYDDDDHADAGDGGL 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG-------GSPEDVPKKFKRQYCIQEV 173
           E V    +   E   E      N   +     +                  +R+Y IQ+V
Sbjct: 121 EVVEATHHHDDEEHGEEAAENGNGGDNGRGRGRRGKGDEAADELRRKRMALRRRYKIQDV 180

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
           IK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK
Sbjct: 181 IKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLK 240

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
            I   + +P+ MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L S AP L++ + +
Sbjct: 241 SIIAEMALPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSD 300

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           LIKRAIRD+Y KDI E+IV GE GY+ AKDFMKLLMPS+AR V+QY D   +F R+ +E 
Sbjct: 301 LIKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVED 360

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           QL +++   V L S GY++IN TEALVSID+NSGRSTREH IE TA+ TNLEAA EIARQ
Sbjct: 361 QLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQ 420

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLRD+AGLIV+DFIDME   N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R
Sbjct: 421 LRLRDMAGLIVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLR 480

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
           + VLE++T+ C +C+G G +R+ SS  L  LR +EE   +     I +    +   Y+LN
Sbjct: 481 TGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSLITLRASQEAAFYVLN 540

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
            KR  + E E R+GV I ++   E+      +E   P    V     +  +   
Sbjct: 541 NKRHELDEIEQRYGVRIAILPDGEIEGARMSVEASGPRPERVVDYTPMVEEEDD 594


>gi|114569846|ref|YP_756526.1| ribonuclease E [Maricaulis maris MCS10]
 gi|114340308|gb|ABI65588.1| RNAse E [Maricaulis maris MCS10]
          Length = 890

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 336/727 (46%), Positives = 434/727 (59%), Gaps = 31/727 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLIDA H EETRVVVL  ++VE+ DFE+  ++ I+GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKKMLIDAGHPEETRVVVLDGSKVEDFDFEAAARRPIRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIPF DRQAL +E   A  D +   ++     V        
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPFEDRQALAEEEASAADDEDDEVEETKSESVR------- 113

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
              A  A+   + E E+         S  +D+         ++  R+Y IQEVIK RQIL
Sbjct: 114 --SADNASEDADGEGEAEAPETIGDDSEDDDISDQQAARRRRQMFRKYKIQEVIKRRQIL 171

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KEERGNKGAA+TTYLSLAGRY VLMPNT +G  ISRKI+N  DRK LK +   LE
Sbjct: 172 LVQVAKEERGNKGAALTTYLSLAGRYCVLMPNTPRGGGISRKISNASDRKRLKSVVSELE 231

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P G+G+I+RTAGASRTK EIKRD +YL+RLW N+REL L+SVAP L+YEEGNL+KR IR
Sbjct: 232 LPKGVGLIIRTAGASRTKTEIKRDADYLLRLWTNIRELTLSSVAPSLIYEEGNLVKRVIR 291

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLY K+I  ++V GE+ Y+EAK FMK+LMPS+A+ V+ Y++  P++ R   E QL++++ 
Sbjct: 292 DLYDKEIDSVLVEGEEAYKEAKAFMKMLMPSHAKKVQHYKEAVPLYLRHQCEAQLEAIYS 351

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY++IN TEALVSIDVNSG+STRE  IE TAL+TNLEAA E ARQ+RLRDLA
Sbjct: 352 DVAPLKSGGYLVINPTEALVSIDVNSGKSTRERNIEATALKTNLEAAAEAARQMRLRDLA 411

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM+E KNNR+VEKK+K+ LK+DRAR+QVG IS FGL+E+SRQR RSS+LE +
Sbjct: 412 GLIVIDFIDMDENKNNRAVEKKMKDMLKRDRARLQVGRISQFGLMEISRQRRRSSLLEGS 471

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T  C  CKG+G++RS  S AL  LR +E+   +  A  I +   + V +YLLN KR  ++
Sbjct: 472 TTTCPTCKGSGHLRSTESSALVALRGLEKEGTRGRAKRIRISVPTAVAIYLLNDKRDHLL 531

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG---SPVQALVNTGHKVGSDSQAPSYDKNIECV 597
             E RF +SI V     +    F IE      P + LV     V S  +    D   E  
Sbjct: 532 MIEQRFSMSIAVTADDTILAPEFSIEALENREPGEELVMAPLSVESIEEIEIPDVPEEDD 591

Query: 598 WQDEALLPIPKSE-------------------SLEDIQDNIVSEESTGVIRKRRRRRRRR 638
              +      ++                    +  ++ +    +   G    +   RR  
Sbjct: 592 SDTDDEQEGREASGGRRRRRRRRRKPSSDDTTAAMEVVNVEAEDSDEGDNADKAESRRDG 651

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
               D                     +      +        +         D + P  S
Sbjct: 652 SGEDDDDQPRRRRRRGRRGGRGRRRTEGETNGEEAVAGEASADAPASDAPASDTANPDSS 711

Query: 699 TPEMESS 705
             E  + 
Sbjct: 712 ATEASAE 718


>gi|294010752|ref|YP_003544212.1| putative ribonuclease [Sphingobium japonicum UT26S]
 gi|292674082|dbj|BAI95600.1| putative ribonuclease [Sphingobium japonicum UT26S]
          Length = 892

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 322/581 (55%), Positives = 393/581 (67%), Gaps = 6/581 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA H EETRV V++ NR+EE DFES   KQ+KGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP  DR+ALL+E      +  A+  D    D     D  L
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRADYDDDDHADAGDGGL 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG------GSPEDVPKKFKRQYCIQEVI 174
           E V    +   E   E      N         +G                +R+Y IQ+VI
Sbjct: 121 EVVEATHHHDDEDHGEEAAENGNGDNGRGRGRRGKGDDAADELRRKRMALRRRYKIQDVI 180

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK 
Sbjct: 181 KRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKS 240

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           I   + +P+ MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L S AP L++ + +L
Sbjct: 241 IIAEMALPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSDL 300

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           IKRAIRD+Y KDI E+IV GE GY+ AKDFMKLLMPS+AR V+QY D   +F R+ +E Q
Sbjct: 301 IKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQ 360

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           L +++   V L S GY++IN TEALVSID+NSGRSTREH IE TA+ TNLEAA EIARQL
Sbjct: 361 LAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQL 420

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRD+AGL+V+DFIDME   N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R+
Sbjct: 421 RLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRT 480

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
            VLE++T+ C +C+G G +R+ SS  LS LR +EE   +   + I +    +   Y+LN 
Sbjct: 481 GVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGNLITLRASQEAAFYVLNN 540

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
           KR  + E E R+GV I ++   E+      +E   P    V
Sbjct: 541 KRRELDEIEQRYGVRIAILPDGEVEGARMSVEASGPRPERV 581


>gi|103488647|ref|YP_618208.1| ribonuclease [Sphingopyxis alaskensis RB2256]
 gi|98978724|gb|ABF54875.1| RNAse E [Sphingopyxis alaskensis RB2256]
          Length = 881

 Score =  464 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 327/737 (44%), Positives = 413/737 (56%), Gaps = 36/737 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA H EETRV V + NR+EE DFES   KQ+KGNIYLAKVTRVEPSLQAAFV+
Sbjct: 12  MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE 71

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP  DR+ALL+E       +   A+D          D   
Sbjct: 72  YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAAAAQRAEDDLDELEGDVADVEE 131

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVK--------------------------- 153
            +       + ET  E     + +                                    
Sbjct: 132 HDDENGDAPAPETIGEGEGEDDGENGDADNGDADGEEGAEEGRENRGDRKRRGRDGRKGG 191

Query: 154 -------GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
                       +     +R+Y IQ+VI+ RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY
Sbjct: 192 RGRGRRSDEEDGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRY 251

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            VLMPNT  G  ISRKI+N  DR+ LK +   + +P  MG I+RTAG SRTK EIKRDF+
Sbjct: 252 CVLMPNTMHGGGISRKISNGADRRKLKAMIDEMNLPPTMGCIVRTAGMSRTKTEIKRDFD 311

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YL RLWD +RE  L S AP L++ + +LIKRAIRD+Y KDI E++V G++GY+ AK FMK
Sbjct: 312 YLARLWDEIREKTLASSAPALIHSDSDLIKRAIRDIYHKDIEEVLVEGDEGYKAAKQFMK 371

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
           LLMPS+AR V+QY DP  ++ R G+E QL  +    V L S GY++IN TEALVSID+NS
Sbjct: 372 LLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDINS 431

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           GRSTREH IE TAL TNLEAA EIARQLRLRD+AGLIV+DFIDM+   N R VE+ +KE+
Sbjct: 432 GRSTREHNIEQTALSTNLEAAAEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMKEA 491

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           LK DRAR+QVG IS FGL+EMSRQR+R+ VLE++T+ C +C+G G +R+ SS  LS LR 
Sbjct: 492 LKNDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSALRL 551

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           +EE   +     I +    +   YLLN+KR  + E E  +GVS+ ++   E       IE
Sbjct: 552 IEEEAARGKGSKITLRASQEATFYLLNEKRRELHEIEELYGVSVEILPDGETEGARMAIE 611

Query: 567 -KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
             G P     +       +       +  +    DE            D  D        
Sbjct: 612 VGGPPPTQRRSFAPIEPIEDDEDDIPEEEDEEESDEDASDSRAPARARDESDTDGEGRKR 671

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+R RR RR    T+  +    + V  +Q    D+                E  A  
Sbjct: 672 RRRRRRSRRGRRDEEGTEGAEDAPSA-VDDVQETAGDAEAASTTDEAPGTDAEAEPAAKK 730

Query: 686 FTENYDVSIPPVSTPEM 702
                            
Sbjct: 731 PRRRGGRGRKKGDEANS 747


>gi|254294255|ref|YP_003060278.1| ribonuclease, Rne/Rng family [Hirschia baltica ATCC 49814]
 gi|254042786|gb|ACT59581.1| ribonuclease, Rne/Rng family [Hirschia baltica ATCC 49814]
          Length = 904

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 311/703 (44%), Positives = 420/703 (59%), Gaps = 15/703 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  MLIDA+H EETRV V+ D ++E+ DFE+  K+Q++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKLMLIDAAHPEETRVTVVADGQIEDFDFEARDKRQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP  DR+ALL E+  +    +    D         +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPKEDREALLAETMASSRHDDDDDVDEEDTVEHNHDSEDS 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E            ++++I  + D  S+ ++ K  +P+   +K  R+Y IQEVIK RQ+L
Sbjct: 121 SEENSETENLSSEGDDTLIDEDTDSSSDDDNAKQRAPKPRHQKPSRRYKIQEVIKRRQVL 180

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L+Q+VKEERGNKGAAVTTYLSLAGRY VLMPNT++G  ISRKI N  DRK LK+I     
Sbjct: 181 LIQVVKEERGNKGAAVTTYLSLAGRYGVLMPNTARGGGISRKIANAADRKRLKKIMGEFS 240

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RTK EI RD++YL+RLW  +R+  L+S+AP L++EEG+L+ RAIR
Sbjct: 241 VPEGMGLIIRTAGAKRTKSEISRDYDYLIRLWSTIRDQTLDSMAPCLIHEEGDLVLRAIR 300

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLY +DI  IIV G++ Y +AK+ + +LMP +A  V ++    P+F    +E QLD++  
Sbjct: 301 DLYDRDIDNIIVEGKEAYVQAKNVISMLMPDHAEKVIEHNHKAPLFISQAVEAQLDNIFS 360

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY++INQTEALV++DVNSG++TRE  IE TA++TNLEAA E+ RQ+RLRDLA
Sbjct: 361 PVVQLPSGGYLVINQTEALVAVDVNSGKATRERNIEATAVKTNLEAAAEVCRQMRLRDLA 420

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GL+V+DFIDMEE KNNR+VEKK+K+ L  DRARVQ G IS FGL E+SRQR R+ VLE +
Sbjct: 421 GLVVIDFIDMEESKNNRAVEKKMKDCLSIDRARVQTGRISQFGLFEISRQRRRAGVLELS 480

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C  C+G G  RS  S AL +LR++EE        ++     S+V LY+LN KR +I 
Sbjct: 481 SEPCKACQGTGRNRSIESAALQLLRAIEERGADGRVDSVAAKAPSEVALYILNHKRDSIT 540

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
             EA  G  I +    E+    F IE       +          +      +  E   + 
Sbjct: 541 SMEASTGADILISADDEMMPGDFAIEATGDGNIIAYKPIVPIDATPKKRRRRRPEEDEE- 599

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                           DN    +++            RR               +   V 
Sbjct: 600 --------------AVDNSEQNDTSDEEDDDELDENSRRRRRGRRGGRRRRGNETGSEVS 645

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
            D  ++    S+  + +   +     +       P   TP++ 
Sbjct: 646 ADGMEVIDGDSEEESEDTNNSSNASKSRRPRRRRPRRRTPDVA 688



 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 9/148 (6%)

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR-PAT 642
           +S      + I      E  +     E  +  +  + +   +               P T
Sbjct: 757 ESNTSEESQAIASDVSKEETVEASTKEEAKPAETEVPAPTMSEPTTDVSHEANDASTPLT 816

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP-- 700
               A   SD  + ++    S    +E + +     ++  A    E  +    P      
Sbjct: 817 KEEPAKSESDSETSKSDESSSEPKNLEEAPVEPVAEVKIDAPAKAETAETEPAPAEETAS 876

Query: 701 ------EMESSNSSSDPIVKKTRWWKRR 722
                    +      P  +K  WW R+
Sbjct: 877 LHSLHANTSTIAEEKAPKKRKIGWWNRK 904


>gi|329890091|ref|ZP_08268434.1| ribonuclease, Rne/Rng family domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328845392|gb|EGF94956.1| ribonuclease, Rne/Rng family domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 895

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 297/595 (49%), Positives = 393/595 (66%), Gaps = 39/595 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  MLIDA+H EETRV ++   +VEE DFES  ++Q++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKTMLIDAAHAEETRVAIVDGRQVEEFDFESRARRQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+A++ E++    + +   +           D   
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREAIMAEAHDDADEDDLGRESDDADSDGKLADE-- 118

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                                E + ++  R+Y IQ+VIK RQIL
Sbjct: 119 -------------------------------------ERLKRRLMRRYKIQDVIKRRQIL 141

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VK+ERG KGAA+TT+LSLAGRY VLMPNT KG  ISRKITN  DR+ LK  A  L+
Sbjct: 142 LVQVVKDERGAKGAALTTWLSLAGRYCVLMPNTGKGGGISRKITNTSDRRRLKSAAAALK 201

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RT+ EIKRD+EYL+RLW+ +REL L S AP +++EE NL++RA+R
Sbjct: 202 VPQGMGLIIRTAGAKRTRAEIKRDYEYLLRLWETIRELTLRSNAPAMIHEEENLVRRAVR 261

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y KD   I V G +G+++A+DFM++LMPS A+ +  Y+   P+F  +GIE  L  +HQ
Sbjct: 262 DMYDKDFDGIQVEGVEGFKQARDFMRVLMPSQAKKIHLYQGSRPLFAANGIEEVLTQIHQ 321

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSGR+T+E  +E TA +TNLEAA E ARQLRLRDLA
Sbjct: 322 PVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEATATKTNLEAAVEAARQLRLRDLA 381

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM+E KNNR+VEK LK++L KDRAR+Q+G IS FGL+E+SRQR R  V+E  
Sbjct: 382 GLIVIDFIDMDEGKNNRAVEKALKDALAKDRARIQMGRISGFGLMEISRQRRRLGVIEGA 441

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T+VC  C+GAG +RS  S AL+ LR+V+    +  A ++ +   + V LY+LN KRA + 
Sbjct: 442 TEVCECCQGAGRVRSAESAALTTLRAVDIEAGKNGAGSVNLRVSTAVALYILNHKRAYLQ 501

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
                 G+++ + I   LA     IE+    +  V     +        +D +  
Sbjct: 502 FLLEERGLNVIIQIDDSLAQGEHSIERTETNEDFVAPESHIDLADLDDGFDDSAY 556


>gi|298291322|ref|YP_003693261.1| ribonuclease, Rne/Rng family [Starkeya novella DSM 506]
 gi|296927833|gb|ADH88642.1| ribonuclease, Rne/Rng family [Starkeya novella DSM 506]
          Length = 915

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 374/738 (50%), Positives = 477/738 (64%), Gaps = 40/738 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+R NRVEE DFE+ ++K ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MANKMLIDATHPEETRVVVVRGNRVEEFDFEAANRKPLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL E    Q       ++      +     + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALLAEEERQQRREAEAENEDKPKSRSRRGRGAA 120

Query: 121 EEVA--------------------------------------PIANFSQETEEESIISAN 142
           +                                            N   E EE +     
Sbjct: 121 KSANADETVSEEAAGEDAPAAEEAEAAPARRSRRRPPSSSSSDDENGGGEVEEIAGEEEV 180

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
            D V + + ++       P+   RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSL
Sbjct: 181 VDEVGSDDALEEVPERGAPRVRARQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSL 240

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRYSVLMPNT++G  ISRKIT+  DRK LKE+A  L+VP GMGVILRTAGA+RTK EIK
Sbjct: 241 AGRYSVLMPNTARGGGISRKITSAEDRKRLKEVASDLDVPEGMGVILRTAGANRTKPEIK 300

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
           RDFEYL+RLW+NVREL L S AP LVYEEG+LIKR+IRDLY KDI E++V+G++GYREAK
Sbjct: 301 RDFEYLLRLWENVRELTLGSTAPSLVYEEGSLIKRSIRDLYNKDIDEVLVAGDEGYREAK 360

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
           DFM++LMPS+A+ V+ Y+D  PIF R G+E QLD++   +V L S GY++IN TEALVSI
Sbjct: 361 DFMRMLMPSHAKNVKVYKDLQPIFTRFGVESQLDAMFLPQVQLRSGGYLVINPTEALVSI 420

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSGRSTREH IEDTAL+TNLEAAEE+ARQLRLRDLAGL+V+DFIDM+EK+NNRSVE+K
Sbjct: 421 DVNSGRSTREHNIEDTALKTNLEAAEEVARQLRLRDLAGLVVIDFIDMDEKRNNRSVERK 480

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           LK+ LK DRAR+Q+G IS+FGL+EMSRQRIR+ VLES+T+VC +C G G++RS  SVAL 
Sbjct: 481 LKDCLKNDRARIQLGRISHFGLMEMSRQRIRTGVLESSTEVCPHCGGTGHVRSSPSVALQ 540

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADK 561
           +LR+ E+ L +   HN+IV T ++  LY+LN KRA + E E RFGV I +     L    
Sbjct: 541 LLRAAEDLLQRSNTHNLIVRTRTENALYVLNHKRAHLHELEERFGVVITISADPTLTGLT 600

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            F I+KG  V   +          +        E V ++EA +   ++ S     +    
Sbjct: 601 PFAIDKGEAVANPIPLPRAPEVVIEPEEEFPVAEEVEEEEAEVAETRAPSAPSDGEQPQG 660

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           + S    R+RRRRR   +   + H  G      +     +D  +     ++    +++  
Sbjct: 661 DRSGRRRRRRRRRRGGGQNGENGHRPGENEAADAAGIEFEDDGEDEGGEAESGATDVI-P 719

Query: 682 GAHGFTENYDVSIPPVST 699
                 E+  +  PP   
Sbjct: 720 AVPLSDEDASLVAPPAED 737


>gi|114800079|ref|YP_759402.1| ribonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114740253|gb|ABI78378.1| ribonuclease, Rne/Rng family [Hyphomonas neptunium ATCC 15444]
          Length = 909

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 305/706 (43%), Positives = 424/706 (60%), Gaps = 13/706 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  MLIDA+H EETRV ++ + +V++ DFE+   +Q++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSRLMLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAV-----------ADDVTH 109
           YGGNRHGFL F EIHPDYYQ+P +DR+ LLKE+      +              + ++ +
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQLPAADRELLLKEAAEEAAAAIEDDDDGPYVPHGMSSEMGN 120

Query: 110 GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC 169
           G     ++          + +   ++      +    +     +    +       ++Y 
Sbjct: 121 GASDEGDEDDDHGDDGDEDTASADDDGEDEGDDAAPRAAKPARRNAKKQTQRTPISKRYK 180

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           IQEVI+ RQ++LVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT +G  ISRKI N  DR
Sbjct: 181 IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGISRKIVNSADR 240

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           K LK I   L+VP G G+I+RTAGA RTKIEIKRD++YL +LW+ + E  L+S AP L+ 
Sbjct: 241 KRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKTLSSEAPALIN 300

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            EG L+ RA+RD++ K+I E+ V G++ YREAKD  K++MPS A+ V+Q+ +  P++   
Sbjct: 301 AEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKDLAKIIMPSQAKKVQQWREEDPLYVAE 360

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E QLDS++   V L S GY++INQTEALV+IDVNSG+STRE  IE TA++TNLEAAEE
Sbjct: 361 AVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTAVRTNLEAAEE 420

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
             RQ+RLRDLAGLIV+DFIDMEE KNNR+VEK+LKE LK DRARVQ G IS FGL+E+SR
Sbjct: 421 ACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRISQFGLMEISR 480

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR R  VL++T+  C+ C G G  RS  S AL ++R++E          I V   +DV L
Sbjct: 481 QRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAIEARAATGGLKGIGVKAPTDVAL 540

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           Y+LN KR  ++E E   G +I++    ++    F I+                     P+
Sbjct: 541 YILNNKREALIEIERLAGFAISIHSSEDMLPGDFQIDADR-DPNAKPKKRSTPRSLMKPT 599

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                +   ++     + + E+ ED  D      +    ++   RRRRRR   +  +A  
Sbjct: 600 PPSARDDDDEEIDDEDVIEDEAGED-DDGETPAAAANKDKQGGGRRRRRRGGRNRGEARE 658

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
                       D+     +  +    +     A   +++ D +  
Sbjct: 659 TGLEVVDAEPAADADASEDDDDEDDGEDTSNGSAEAGSDDSDAARK 704


>gi|94495886|ref|ZP_01302465.1| ribonuclease, Rne/Rng family protein [Sphingomonas sp. SKA58]
 gi|94424578|gb|EAT09600.1| ribonuclease, Rne/Rng family protein [Sphingomonas sp. SKA58]
          Length = 911

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 328/671 (48%), Positives = 415/671 (61%), Gaps = 6/671 (0%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA H EETRV V++ NR+EE DFES   KQ+KGNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP  DR+ALL+E      +  A+  ++   +    +   L E  
Sbjct: 61  RHGFLAFSEIHPDYYQIPREDREALLQEERAHAEEEAALRAEIEDDEDAGEDGVELVEAT 120

Query: 125 PIANFSQETEE------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
                    E                      D             +R+Y IQ+VIK RQ
Sbjct: 121 HHHEDEDAAEADAESPAPEAAKGGRRKRGKNGDDAADELRRKRMALRRRYKIQDVIKRRQ 180

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
           +LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK I   
Sbjct: 181 VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIIAE 240

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
           + +P+ MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L + AP L++ + +LIKRA
Sbjct: 241 MNLPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLQASAPELIHNDSDLIKRA 300

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           IRD+Y KDI E+IV GE GY+ AKDFMKLLMPS+AR V+QY D   +F R+ +E QL ++
Sbjct: 301 IRDIYNKDIEEVIVEGEDGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQLAAM 360

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
           +   V L S GY++IN TEALVSID+NSGRSTREH IE TA+ TNLEAA EIARQLRLRD
Sbjct: 361 YNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLRD 420

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           +AGL+V+DFIDME   N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R+ VLE
Sbjct: 421 MAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVLE 480

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           ++T+ C +C+G G +R+ SS  LS LR +EE   +   + I +    +   Y+LN KR  
Sbjct: 481 ASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGNLITLRASQEAAFYVLNNKRRE 540

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
           + E E R+GV I ++   E+      +E   P    V T   +  D       ++ + + 
Sbjct: 541 LDEIELRYGVRIEILPDGEIEGARMSVEASGPRPERVVTYAPLVEDDDDIDLPEDEDDIE 600

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
           + E      + E   D  D           R+RRR  +R        +A    + S  + 
Sbjct: 601 EVEDAEDSAEREERGDRGDEDREGGRRRRRRRRRRGGQREDQRDAGSEAETDDNESGDET 660

Query: 659 VIDDSFDMYME 669
             +D  +    
Sbjct: 661 DAEDGDEAEDR 671


>gi|83858494|ref|ZP_00952016.1| ribonuclease, Rne/Rng family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853317|gb|EAP91169.1| ribonuclease, Rne/Rng family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 908

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 321/697 (46%), Positives = 421/697 (60%), Gaps = 48/697 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLIDA+H EETRVV++ +NRVEE DFES  KK I+GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSRKMLIDAAHPEETRVVIVDNNRVEEFDFESASKKPIRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGN+HGFL F EIHPDYYQIP  DR AL +       D          G+    ++ + 
Sbjct: 61  YGGNKHGFLAFNEIHPDYYQIPHEDRAALREAEAEVAADL---------GEDAGSDEENE 111

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +  AP  +   +                             + F R+Y IQEVIK RQ+L
Sbjct: 112 DAPAPDEDDLIDE-----------------------AARRRRSFLRKYKIQEVIKRRQVL 148

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LK     L 
Sbjct: 149 LVQVAKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNASDRKRLKSAVSELS 208

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA+RTK+EIKRD++YL+RLW+ +R   L S AP L+YEEGNL+KR IR
Sbjct: 209 VPQGMGLIIRTAGAARTKVEIKRDYDYLIRLWETIRTTTLESSAPKLIYEEGNLVKRVIR 268

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLY K+I E++V GE+ Y+EAK FM++LMPS+A+ V+ Y D  P+F R  +E QL+++H 
Sbjct: 269 DLYDKEIDEVLVDGEEAYKEAKAFMRMLMPSHAKKVQNYRDATPLFLRHQVESQLEAIHS 328

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY++IN TEALVSIDVNSG++T+E  IE TAL+TN+EAAEE ARQ+RLRDLA
Sbjct: 329 PVAQLKSGGYIVINPTEALVSIDVNSGKATKERNIEQTALKTNMEAAEEAARQMRLRDLA 388

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GL+V+DFIDM+E KN R+VEKK+K+SLK+DRAR+QVG IS FGL+EMSRQR R+S++E +
Sbjct: 389 GLLVIDFIDMDENKNVRAVEKKMKDSLKRDRARLQVGRISQFGLMEMSRQRRRTSLVEGS 448

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T VC +C+G+G+IRS  S AL  LR++EE  ++       +    +V LY+LN+KR  + 
Sbjct: 449 TDVCPHCQGSGHIRSIESSALVALRTLEEEGVRGRTAKARLRCSPEVALYILNEKRDHLT 508

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
             EAR+ +S+ V     L      +E+    +       +        +    +E     
Sbjct: 509 AIEARYDMSVTVSADDSLIRPDCQLERLESRREAARAVAEAARADTPLTSADAVEP---- 564

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                       +   D   S+E+     +  R  R     T+   +             
Sbjct: 565 ------------DLDIDEDESDEAEDSAERDTRPARSASDETNEDGSKKRRRRGRRGGRN 612

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
               +      D     L         E  D +    
Sbjct: 613 RRKRNDEAGGQDDAQAALDNADDENRAETTDTASDDE 649



 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                     ++ +AP+  K      + E         +  D +        +   ++R 
Sbjct: 757 KPTADAQSGDAEDEAPAKPKRRTRRKKAEPAADAASETNAADDETASADAGDSAKPKRRT 816

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           RR++     TD      +   S+   +  +     ++ S+       E  A   +   D 
Sbjct: 817 RRKKAEPENTDKAAREAMEQASAPAELSVEEAKAEIQASETN----AEPAAEAKSAESDK 872

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                S    E+ +S      K+  WW++
Sbjct: 873 PEDAASETRQETGDSEEARPAKR-GWWQK 900


>gi|167646534|ref|YP_001684197.1| ribonuclease [Caulobacter sp. K31]
 gi|167348964|gb|ABZ71699.1| ribonuclease, Rne/Rng family [Caulobacter sp. K31]
          Length = 905

 Score =  457 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 324/685 (47%), Positives = 422/685 (61%), Gaps = 48/685 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLIDA+H EETRVVV+  +RVEE DFES+ +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MSKKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL+++ +    D                     
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHG---------------- 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                + D V + ED          ++  R+Y IQEVI+ RQI+
Sbjct: 105 -----------------RDGDDGDAVDDEEDAVEEELARRKRRLMRKYKIQEVIRRRQIM 147

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKIT   DRK LK + +GL+
Sbjct: 148 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTITDRKRLKSVVQGLD 207

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+N+R+  L+S+AP L+YEE +L+KRAIR
Sbjct: 208 VPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRDNTLHSIAPALIYEEEDLVKRAIR 267

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y KD+  I V GE GY+EA+DFM++LMPS A+ V  Y +  P+F +  IE  L  ++ 
Sbjct: 268 DMYDKDLEGIWVEGEAGYKEARDFMRMLMPSQAKKVFPYREAAPLFVKHKIEDHLAQIYS 327

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSG++TRE  IE TAL+TN+EAAEE ARQLRLRDLA
Sbjct: 328 PVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNMEAAEEAARQLRLRDLA 387

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM+E KNNR+VEK LK+SLK DRAR+Q+G IS FGL+E+SRQR R+ VLE T
Sbjct: 388 GLIVIDFIDMDEGKNNRAVEKILKDSLKDDRARIQMGKISGFGLMEISRQRRRTGVLEGT 447

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T VC +C G G +RS  S AL+ LR+VE   L+     + +     V +Y+LN+KRA ++
Sbjct: 448 THVCEHCDGTGRVRSVESSALAALRAVEVEALKG-GGAVTLKVSRPVGIYILNEKRAYLL 506

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
             +    + + V++   L      I++    +               P YD        +
Sbjct: 507 RLQQTHALFVTVLVDDSLHQAEHDIDRTELGER--PAPQIFAPIEPDPVYDDEAFEDEDE 564

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
           E    I    S ED                R  R  R  PA D  +              
Sbjct: 565 EDEEEIEVGASEED------------DEAPRVARPARAEPAEDDANGRRGRKRRRRGGRR 612

Query: 661 DDSFDMYMEPSDITNHNLLENGAHG 685
           D+  +  +E +   +    +     
Sbjct: 613 DERDEAPVEAAGDEDEEDADGVERA 637



 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 11/156 (7%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                      ++     +      +   L P        D+   +  ++      K+ R
Sbjct: 752 DRTETSADAPRAERTPAPRVDVADLEPAPLAPAVIEGPPADVWVELPPQDEA---PKKAR 808

Query: 634 RRRRR-RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF----TE 688
           R R R R ATD   +   S   S+   ++ +     E   +     +E           E
Sbjct: 809 RPRSRGRKATDAETSVEASVEESVAETVEATPAPVDETPLVAADVEVEASVAVQPAPAPE 868

Query: 689 NYDVSIPPVSTPEMESSNSSS---DPIVKKTRWWKR 721
              V+  PV  P     + +     P   K  WW+R
Sbjct: 869 PVMVAPEPVPAPVAAEPDPAEILTPPEKPKRGWWRR 904


>gi|163843182|ref|YP_001627586.1| ribonuclease [Brucella suis ATCC 23445]
 gi|163673905|gb|ABY38016.1| ribonuclease, Rne/Rng family [Brucella suis ATCC 23445]
          Length = 922

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 367/667 (55%), Positives = 446/667 (66%), Gaps = 50/667 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVE SLQAAFV+
Sbjct: 1   MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEQSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+    A    +   +     D +  ND + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120

Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144
                      +  E     A+ D                                    
Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180

Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                       V S   +          +  +RQY IQEVIK RQILLVQ+VKEERGNK
Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA-RGLEVPAGMGVILRT 251
           GAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP D +   +   + LEVP GM VILRT
Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQD-RKRLKEIVKELEVPQGMSVILRT 299

Query: 252 AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311
           AGA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EI+
Sbjct: 300 AGANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDIREIL 359

Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371
           VSGE GYREAKDFM++LMPS+A++V+ Y D  PIF R+G+E QLD +   +VTL S GY+
Sbjct: 360 VSGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYL 419

Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431
           IINQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDME
Sbjct: 420 IINQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDME 479

Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
           EK+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G
Sbjct: 480 EKRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTG 539

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
           +IRS SS+AL I+R +E+YLL+++  +I V T +   LY+LN KR  + + E RFGV I+
Sbjct: 540 HIRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEIS 599

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           +     + ++ F I+KG+P    V          +    D  I     +         ++
Sbjct: 600 IDADESVENQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEISVEEDETEEEARTDVQA 659

Query: 612 LEDIQDN 618
            E+  + 
Sbjct: 660 GEERSEE 666



 Score = 52.3 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919


>gi|332185613|ref|ZP_08387361.1| ribonuclease, Rne/Rng family domain protein [Sphingomonas sp. S17]
 gi|332014591|gb|EGI56648.1| ribonuclease, Rne/Rng family domain protein [Sphingomonas sp. S17]
          Length = 881

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 316/620 (50%), Positives = 410/620 (66%), Gaps = 10/620 (1%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA H EETRV V++ NR+EE DFES  +KQ+KGNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP  DR+AL     + +    A  +     ++   +D   +   
Sbjct: 61  RHGFLAFSEIHPDYYQIPKEDREAL-----LREEAEHAAEEAALRAELDAEDDEDHDGED 115

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
              +     ++E    A     S V D +  +     +  +R+Y IQ+VI  RQ+LLVQI
Sbjct: 116 HDDHADDHHDDEDGEGAPRPKKSTVNDDQVEALRQRRQNLRRRYKIQDVIHRRQVLLVQI 175

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK I   + +P+ 
Sbjct: 176 VKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIMAEMALPST 235

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304
           MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L+S AP L+Y + +LIKRAIRD+Y 
Sbjct: 236 MGCIVRTAGLQRTKTEIKRDFDYLARLWDGIREKTLHSSAPTLIYGDSDLIKRAIRDIYN 295

Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVT 364
           ++I E+IV GE+GYR+AKDFM+LLMP++AR V+QY D  P+F R+ +E QL +++   V 
Sbjct: 296 REIEEVIVEGEEGYRQAKDFMRLLMPAHARRVKQYADAVPLFQRAHVEDQLAAMYNPVVQ 355

Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424
           L S GY++IN TEALVSID+NSGRSTREH IE TA  TNLEAA+EIARQLRLRD+AGL+V
Sbjct: 356 LKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAQEIARQLRLRDMAGLVV 415

Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
           +DFIDM+   N R VEK +KE+LK DRAR+QVG IS+FGL+EMSRQR+R+ VLE++T+ C
Sbjct: 416 IDFIDMDNNSNVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTRPC 475

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544
            +C+G G +R+ SS  LS LR +E+   +     + +    +  +Y+LN+KRA I E E 
Sbjct: 476 PHCEGTGLVRTASSSGLSALRLIEDEAARGRGSILTLRASQEAAVYVLNRKRADIAEIED 535

Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           R+GV++ ++   E       +E   P        +    D   P  +   + + + E   
Sbjct: 536 RYGVTVEIIPDREEEGARMTVEASGP-----PPAYAPKIDMLLPVEEDEDDLIDEIEEEE 590

Query: 605 PIPKSESLEDIQDNIVSEES 624
                E   +        E 
Sbjct: 591 EEEVEEEATEAASPREPRED 610


>gi|302383303|ref|YP_003819126.1| ribonuclease, Rne/Rng family [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193931|gb|ADL01503.1| ribonuclease, Rne/Rng family [Brevundimonas subvibrioides ATCC
           15264]
          Length = 910

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 306/636 (48%), Positives = 399/636 (62%), Gaps = 45/636 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  MLIDA+H EETRV ++   +VEE DFES+ K+Q++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKTMLIDAAHAEETRVAIVDGRQVEEFDFESKTKRQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+A++ E      D ++  ++    D         
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPAADREAIMAE--AHSADDDSDDENARDSDDGDSEGGMA 118

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE                                   E + ++  R+Y IQ+VIK RQIL
Sbjct: 119 EE-----------------------------------ERLKRRLMRRYKIQDVIKRRQIL 143

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VK+ERG KGAA+TT+LSLAGRY VLMPNT KG  ISRKIT   DRK LK  A  L+
Sbjct: 144 LVQVVKDERGGKGAALTTWLSLAGRYCVLMPNTGKGGGISRKITQATDRKRLKAAASALD 203

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+ +RE  L S AP L+YEE NL++RA+R
Sbjct: 204 VPRGMGLIIRTAGAKRTKAEIKRDYEYLLRLWETIRETTLASHAPSLIYEEENLVRRAVR 263

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++ KD   I V G +G++EA+DFM++LMPS A+ V  Y+   P+F  +GIE  L  +HQ
Sbjct: 264 DMFDKDFDGIQVEGVEGFKEARDFMRVLMPSQAKKVHLYQGSKPLFAANGIEELLTQIHQ 323

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN----LEAAEEIARQLRL 416
             V L S GY++INQTEALV+IDVNSGR+T+E  +E TA +TN    +EAA    RQLRL
Sbjct: 324 PVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEATAFKTNCEAAVEAA----RQLRL 379

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RDLAGL+V+DFIDM+E KNNR+VE+ LK+ L  DRAR+Q+G IS FGL+E+SRQR R  V
Sbjct: 380 RDLAGLVVIDFIDMDESKNNRTVERILKDELSFDRARIQMGRISGFGLMEISRQRRRLGV 439

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
           LE  T+VC +C+GAG +RS  S AL +LR+V+    +  A +I +   S V LY+LN KR
Sbjct: 440 LEGATEVCPHCQGAGRVRSAESAALMVLRAVDIEAGKNGAGSINLKVSSAVALYILNHKR 499

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596
             +     R G+++ + I   L      IE+    +  V     V        +D     
Sbjct: 500 DYLQRLLERRGLAVIIQIDDRLGQGESAIERTETNEDFVAPEAVVSLSDLDDDFDDAAYS 559

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
              D        ++  E   D   +++     R  R
Sbjct: 560 DEDDNDDDDDFIADEDESALDREDTDDDEPRERAER 595


>gi|254419844|ref|ZP_05033568.1| ribonuclease, Rne/Rng family protein [Brevundimonas sp. BAL3]
 gi|196186021|gb|EDX80997.1| ribonuclease, Rne/Rng family protein [Brevundimonas sp. BAL3]
          Length = 926

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 299/631 (47%), Positives = 403/631 (63%), Gaps = 40/631 (6%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRV ++   ++EE DFES  K+Q++GNIYLAKVTRVEPSLQAAF++YGGN
Sbjct: 1   MLIDAAHPEETRVAIVDGRQIEEFDFESRAKRQLRGNIYLAKVTRVEPSLQAAFIEYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP +DR+A++ E++    D +   +     D             
Sbjct: 61  RHGFLAFNEIHPDYYQIPVADREAIMAEAHDDDDDDDLGRESDDDADPEAALADE----- 115

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
                                            E + ++  R+Y IQ+VIK RQILLVQ+
Sbjct: 116 ---------------------------------ERLKRRLMRRYKIQDVIKRRQILLVQV 142

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           VK+ERG KGAA+TT+LSLAGRY VLMPNT KG  ISRKITN  DR+ LK     LEVP G
Sbjct: 143 VKDERGAKGAALTTWLSLAGRYCVLMPNTGKGGGISRKITNTSDRRRLKSAVSALEVPKG 202

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304
           MG+I+RTAGA RTK EIKRD++YL+RLW+ +RE  L S AP ++YEE NL++RA+RD++ 
Sbjct: 203 MGLIIRTAGAKRTKAEIKRDYQYLLRLWETIRETTLASHAPSVIYEEENLVRRAVRDMFD 262

Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVT 364
           KD   I V G +G++EA+DFM++LMPS A+ V  Y    P+F  +GIE  L  +HQ  V 
Sbjct: 263 KDFDGIQVEGVEGFKEARDFMRVLMPSQAKKVHLYRGSRPLFAANGIEELLTQIHQPVVP 322

Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424
           L S GY++INQTEALV+IDVNSGR+T+E  +E TA +TN+EAAEE ARQLRLRDLAGL+V
Sbjct: 323 LKSGGYLVINQTEALVAIDVNSGRATKERNVEQTAFKTNMEAAEEAARQLRLRDLAGLVV 382

Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
           +DFIDM+E KNNR+VE+ LK++L  DRAR+Q+G IS FGL+E+SRQR R  V+E  T+ C
Sbjct: 383 IDFIDMDEGKNNRTVERVLKDALSSDRARIQMGRISPFGLMEISRQRRRLGVIEGATEAC 442

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544
            +C+G G IRS  S AL  LR+V+    +  A  +++   + V LY+LN KRA +     
Sbjct: 443 PHCQGTGRIRSAESAALMTLRAVDIEAGKNGAGVVVLKVCTAVGLYILNHKRAYLQSLLE 502

Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           R G+++ V I   L      I++    +  V    ++   +    +D ++     ++   
Sbjct: 503 RRGLNVIVQIDDSLGQGEHNIDRTETNEDFV--APEIEMPNLDDDFDASLYEDEDEDDDE 560

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
            I   +  E+  + +  E+S     + R  R
Sbjct: 561 EIVGDDEDEEDVEALDREDSDDDEPRERAER 591


>gi|197105305|ref|YP_002130682.1| ribonuclease, Rne/Rng family protein [Phenylobacterium zucineum
           HLK1]
 gi|196478725|gb|ACG78253.1| ribonuclease, Rne/Rng family protein [Phenylobacterium zucineum
           HLK1]
          Length = 896

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 310/595 (52%), Positives = 402/595 (67%), Gaps = 26/595 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  MLIDA+H EETRVVV+  NRVEE DFES+++KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MSKTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +D                            +  + + 
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVAD-------------------------REALLREEAE 95

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+            E+      +    + +DV         ++  R+Y IQEVI+ RQI+
Sbjct: 96  EDDDDRHEPRARAPEDEDEVDLSGSADDEDDVVEEELARRRRRLMRRYKIQEVIRRRQIM 155

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKIT   DRK LK I + L+
Sbjct: 156 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTATDRKRLKSIVQSLD 215

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           VPAGMG+I+RTAGA RTK EIKRD++YL+RLW+N+RE  L+S+AP L+YEE +L+KRAIR
Sbjct: 216 VPAGMGLIVRTAGAKRTKAEIKRDYDYLLRLWENIRETTLHSIAPALIYEEEDLVKRAIR 275

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DLY KD+  + V GE G++EA+DFM++LMPS A+ V+ Y +P P++ +  +E  L  ++ 
Sbjct: 276 DLYDKDVDNVWVEGEAGFKEARDFMRMLMPSQAKKVQLYREPTPLYVKHKVEDHLSQIYS 335

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++INQTEALV+IDVNSGR+TRE  IE TAL+TN+EAAEE ARQLRLRDLA
Sbjct: 336 PVVPLRSGGYLVINQTEALVAIDVNSGRATRERNIEATALKTNMEAAEEAARQLRLRDLA 395

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM+E KNNR+VEKKLK+ LK DRARVQ+G IS FGL+E+SRQR R+ VLE T
Sbjct: 396 GLIVIDFIDMDEAKNNRAVEKKLKDCLKDDRARVQMGKISPFGLMEISRQRRRTGVLEGT 455

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T VC +C G G +RS  S AL+ LR++E   L+       +     V LY+LN+KR  + 
Sbjct: 456 THVCEHCGGTGRVRSVESSALAALRALEIEALKG-GGEATLTVPRAVGLYILNEKRGHLA 514

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
                FG+ + V+I  ++A     IE+ +      +      + + A    +   
Sbjct: 515 RLHHAFGLFVTVLIDDDMAHAEHGIERTASETRAEHAAALAPTAAGAVPPAEEAY 569


>gi|114771118|ref|ZP_01448558.1| ribonuclease, Rne/Rng family protein [alpha proteobacterium
           HTCC2255]
 gi|114548400|gb|EAU51286.1| ribonuclease, Rne/Rng family protein [alpha proteobacterium
           HTCC2255]
          Length = 870

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 316/812 (38%), Positives = 441/812 (54%), Gaps = 104/812 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KMLIDA+H EETRVVV+  N+V+E DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MPKKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQ----------ALLKESNIAQTDS---------- 100
           YGGNRHGFL F EIHPDYYQIP +DR+            L+E                  
Sbjct: 61  YGGNRHGFLSFAEIHPDYYQIPVADREALIAEEEAYTKSLEEEANIAQQKKSRIRKRKAK 120

Query: 101 -----------------EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
                            E  ++     D       +++    +         ++I+   +
Sbjct: 121 VIAEDANNDVTTSSDIIENPSETHEVVDDADSKKDNIDSDKSVDEDENNKSSDNILDNID 180

Query: 144 DVVSNVE---------------------------DVKGGSPEDVPKKFKRQYCIQEVIKN 176
             +++ E                           D          K   R+Y IQEVIK 
Sbjct: 181 PEITSDESIDTNINDSVELEMDNTQSDNGIESVADDDVEEEVRPRKPRPRRYKIQEVIKV 240

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
           RQILL+Q+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK +KEI 
Sbjct: 241 RQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVQDRKKIKEIT 300

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
             L+VP G G+I+RTAGA R + +I RD+EYLMR W  +R++ L S+AP  +Y EG++IK
Sbjct: 301 SELDVPKGAGLIVRTAGAKRNRDDILRDYEYLMRQWTQIRDITLESIAPTQIYAEGDIIK 360

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R+IRDLY  DI EIIV GE+G+  AK +M +LMPS+ + V+QY++  P++ R  +E  L 
Sbjct: 361 RSIRDLYNNDIDEIIVEGERGFEAAKAYMTMLMPSHVKRVKQYKNKMPLYARYQVENYLG 420

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
            +    V L S GY++I  TEALV++DVNSG++T+E  IE TAL+TNLEAA+E+ARQLRL
Sbjct: 421 GMFNPTVQLKSGGYIVIGVTEALVAVDVNSGKATKESSIEKTALKTNLEAADEVARQLRL 480

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RDLAGLIV+DFIDMEE++NN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR+R  +
Sbjct: 481 RDLAGLIVIDFIDMEERRNNIAVEKRMKDKLKSDRARIQVGRISGFGLMEMSRQRLRPGM 540

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
           LE+TTK C +C G G +RS  S ALSILR +EE  ++     I       +  YLLN KR
Sbjct: 541 LEATTKECPHCLGTGLVRSDDSQALSILREIEEEAIRKRTKEIQATVPVGISNYLLNHKR 600

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK---- 592
             I   E+++ +SI +     +    + +EK      ++     + +  +  +       
Sbjct: 601 ENIALIESQYAISIIIEASASMIGTDYELEKRKTSSRIIADVFDMPTAREMEAAANIDVT 660

Query: 593 ----------------------------------NIECVWQDEALLPIPKSESLEDIQDN 618
                                               +   + E +       S +    +
Sbjct: 661 KSTEDAETSTNLDDDDKPKKRRRRRRRKPRKDEIAPDTSNEAEDVNQGDAPSSDKSNIVS 720

Query: 619 IVSEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           +   +   +  K  + +R+ + +  T+           + Q+V++ S ++  +       
Sbjct: 721 LEPAKEQPLKPKAVKSKRKPKIKDITEIEINISEKPSDAKQSVVEISEEVKPKKRKRRTK 780

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             +E       +N D+  P  S P+ + S   
Sbjct: 781 AQIEADEAEAKKNKDLEKPKKSQPKAKKSAGK 812


>gi|87200332|ref|YP_497589.1| ribonuclease E [Novosphingobium aromaticivorans DSM 12444]
 gi|87136013|gb|ABD26755.1| RNAse E [Novosphingobium aromaticivorans DSM 12444]
          Length = 935

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 326/728 (44%), Positives = 425/728 (58%), Gaps = 47/728 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA H EETRV VL+ NR+EE DFES   KQIKGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MTTRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK-------------------ESNIAQTDSE 101
           +GGNRHGFL F EIHPDYYQIP  DR+ALL                    + + A  +  
Sbjct: 61  FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAHAEEEAALRAAEDGDDEDYADGEGY 120

Query: 102 AVADDVTHGDVTIPNDHSLEE--------------------VAPIANFSQETEEESIISA 141
              + VT  D +  +  +  E                           S++         
Sbjct: 121 DSDEGVTEVDTSEKDQVATIEGGVVENGFDHEGEEGEDAEASEDGEGESEDNGRRRGRQQ 180

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                   +  +           +R+Y IQ+VI+ RQ+LLVQ+VKEERGNKGAA+TTYLS
Sbjct: 181 GRRRQGRSQGKEADELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLS 240

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN+S G  ISRKI +  DRK LK I   LE+P  M  I+RTAG  RTK EI
Sbjct: 241 LAGRYCVLMPNSSHGGGISRKINSASDRKRLKTIISELELPRSMSCIVRTAGLQRTKPEI 300

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRDF+YL RLWD +RE  + SVAP L++ + +LIKRAIRD+Y +DI E++V GE GYR A
Sbjct: 301 KRDFDYLARLWDEIRERTMKSVAPALIHSDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAA 360

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           KDFMKLLMPS+A+ V+ Y DP P+F R G E QL +++   V L S GY++IN TEALVS
Sbjct: 361 KDFMKLLMPSHAKRVKAYADPVPLFQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVS 420

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NSGRST+EH IE TA+ TNLEAA EIARQLRLRD+AGL+V+DFIDME   N R VEK
Sbjct: 421 IDINSGRSTKEHGIEQTAVATNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEK 480

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            +K++LK DRAR+QVG IS FGL+EMSRQR+R+ VLE+TT+ C +C G+G +R+ SS  L
Sbjct: 481 AMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGL 540

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S LR +E+   +   + + ++   +  +Y+LN KRA + E E R+GV++ V+   E    
Sbjct: 541 SALRLIEDEAAKGKGNVVTLYASQEAAVYVLNAKRADLAEIEERYGVTVEVIPEGENEGA 600

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              +                      P  +   + V +D         E           
Sbjct: 601 KMRV--------ASRGPKPEFVPRFEPIVEPEEDDVVEDAYEDEEEVEERAPRGNRAAEG 652

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           +E      +R+RR+RRR    D  + G   +V +  +  +   D   E  +   +    +
Sbjct: 653 DEGERSDGRRKRRKRRRGRNRDRREDGTDGEVETSLDDAEADTDADAEGDEAEGNEAATS 712

Query: 682 GAHGFTEN 689
             +    +
Sbjct: 713 DENADEND 720


>gi|149184655|ref|ZP_01862973.1| ribonuclease [Erythrobacter sp. SD-21]
 gi|148831975|gb|EDL50408.1| ribonuclease [Erythrobacter sp. SD-21]
          Length = 913

 Score =  444 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 317/598 (53%), Positives = 396/598 (66%), Gaps = 43/598 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +MLIDA H EETRV VL+ NR+EE DFES  K+QIKGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MATRMLIDARHPEETRVAVLKGNRIEEFDFESADKRQIKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDR--------------QALLKESNIAQT---DSEAV 103
           +GGNRHGFL F EIHPDYYQIP  DR              Q L  E         D    
Sbjct: 61  FGGNRHGFLAFSEIHPDYYQIPKEDRDALLAAEAEVAEEEQRLRAEEEERGEMPGDEYDA 120

Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED------------ 151
            D+          +  LEEV         T EE  +  + D   + ED            
Sbjct: 121 EDESAEALAEDLAEDGLEEVDTSDKDDVATIEEGQLDGDEDDDDDSEDEGDDKPKGRGRR 180

Query: 152 --------------VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
                          +           +R+Y IQ+VI+ RQ+LLVQ+VKEERGNKGAA+T
Sbjct: 181 GRGRRQGKGGRTRAKEVDEARAKRMALRRKYKIQDVIQRRQVLLVQVVKEERGNKGAALT 240

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
           TYLSLAGRY+VLMPN+S G  ISRKI +  DRK LK++   L +P  MG+I+RTAG SRT
Sbjct: 241 TYLSLAGRYTVLMPNSSHGGGISRKINSASDRKRLKQVVSDLSLPRSMGLIVRTAGLSRT 300

Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
           K EIKRDF+YL RLWD +RE  L+S AP L++ + +LIKRAIRD+Y ++I E++V GE G
Sbjct: 301 KTEIKRDFDYLARLWDEIRERTLSSAAPALIHSDSDLIKRAIRDIYNREIEEVVVEGEDG 360

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           Y+ AK FMK+LMPS+AR V+QY DP P+F R G E QL +++   V L S GY++IN TE
Sbjct: 361 YKSAKAFMKMLMPSHARRVKQYADPVPLFQRYGAEDQLKAMYDPVVQLKSGGYLVINPTE 420

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           ALVSID+NSGRST+EH IE TAL TNLEAA+EIARQLRLRD+AGL+V+DFID E   N R
Sbjct: 421 ALVSIDINSGRSTKEHNIEQTALHTNLEAAKEIARQLRLRDMAGLVVIDFIDQEHHSNTR 480

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VE+ +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ VLE+TT+ C +C G G +R+ S
Sbjct: 481 KVERAMKDALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRECPHCDGTGLVRTAS 540

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
           S  LS LR +EE   +     I +   ++  +YLLN+KRA +VE   R+GV++ VV  
Sbjct: 541 SAGLSALRLIEEEAAKGKGTKIRLAASTEAAVYLLNEKRAELVEIGERYGVTVEVVPE 598


>gi|260753254|ref|YP_003226147.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552617|gb|ACV75563.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 912

 Score =  444 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 322/718 (44%), Positives = 423/718 (58%), Gaps = 30/718 (4%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           KMLIDA H EETRV V++ NR+EE DFES  ++Q+KGNIYLAKVTRVEPSLQAAFVDYGG
Sbjct: 5   KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           NR GFL F EIHPDYYQIP  D                  A      + +  ++   E  
Sbjct: 65  NRQGFLAFSEIHPDYYQIPRED----------------REALLREEEEYSARHNKQQESE 108

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                      E     AN+D + N+ +             +  Y IQ+VI+ RQ+LLVQ
Sbjct: 109 DDEEGEDLSDSEAIRNDANDDSLENLRN-------RRRHFGRHHYRIQDVIRRRQVLLVQ 161

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK I   L +P+
Sbjct: 162 VVKEERGNKGAALTTYLSLAGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPS 221

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L S AP L+Y + +L+KRAIRD+Y
Sbjct: 222 SMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIY 281

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            ++I EI+V G+ GYR A++FMKLLMPS+ R VR Y DP P+F R G+E QL++++Q  V
Sbjct: 282 SREIDEILVEGDDGYRAARNFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIV 341

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY++IN TEALVSID+NSGRSTREH IE TA  TNLEAA EIARQLRLRD+AGLI
Sbjct: 342 QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLI 401

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDME   N R VEK +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ +LE++T  
Sbjct: 402 VIDFIDMESSANIRRVEKAMKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVP 461

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +C+G+G + +  S  L  LR +E+   +     I V T  D  +Y+LN+KR  +   E
Sbjct: 462 CPHCQGSGLMLTTPSAGLMALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIE 521

Query: 544 ARFGVSINVVIGIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
             +GV+I +       +    +E  G P    +     + + S     D   E   ++  
Sbjct: 522 TLYGVTILIDGDPLRGNNQISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIE 581

Query: 603 LLPIPKSESLED------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
              + ++    +       +++  + E      +R   +   +   +  +     + S  
Sbjct: 582 AEEVIEAPFRRNHRQNMARRNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEH 641

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 S             N  E      +E  + + P   TP  ES  S + P+ K
Sbjct: 642 SRRNRRSRRGRRGGRRRNGENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEK 699


>gi|241761340|ref|ZP_04759428.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374247|gb|EER63744.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 912

 Score =  444 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 322/718 (44%), Positives = 423/718 (58%), Gaps = 30/718 (4%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           KMLIDA H EETRV V++ NR+EE DFES  ++Q+KGNIYLAKVTRVEPSLQAAFVDYGG
Sbjct: 5   KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           NR GFL F EIHPDYYQIP  D                  A      + +  ++   E  
Sbjct: 65  NRQGFLAFSEIHPDYYQIPRED----------------REALLREEEEYSARHNKQQESE 108

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                      E     AN+D + N+ +             +  Y IQ+VI+ RQ+LLVQ
Sbjct: 109 DDEEGEDLSDSEAIRNDANDDSLENLRN-------RRRHFGRHHYRIQDVIRRRQVLLVQ 161

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK I   L +P+
Sbjct: 162 VVKEERGNKGAALTTYLSLAGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPS 221

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L S AP L+Y + +L+KRAIRD+Y
Sbjct: 222 SMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIY 281

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            ++I EI+V G+ GYR A++FMKLLMPS+ R VR Y DP P+F R G+E QL++++Q  V
Sbjct: 282 SREIDEILVEGDDGYRAARNFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIV 341

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY++IN TEALVSID+NSGRSTREH IE TA  TNLEAA EIARQLRLRD+AGLI
Sbjct: 342 QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLI 401

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDME   N R VEK +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ +LE++T  
Sbjct: 402 VIDFIDMESSANIRRVEKAMKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVP 461

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +C+G+G + +  S  L  LR +E+   +     I V T  D  +Y+LN+KR  +   E
Sbjct: 462 CPHCQGSGLMLTTPSAGLMALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIE 521

Query: 544 ARFGVSINVVIGIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
             +GV+I +       +    +E  G P    +     + + S     D   E   ++  
Sbjct: 522 TLYGVTILIDGDPLRGNNQISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIE 581

Query: 603 LLPIPKSESLED------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
              + ++    +       +++  + E      +R   +   +   +  +     + S  
Sbjct: 582 AEEVIEAPFRRNHRQNMARRNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEH 641

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 S             N  E      +E  + + P   TP  ES  S + P+ K
Sbjct: 642 SRRNRRSRRGRRGGRRRNGENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEK 699


>gi|326387476|ref|ZP_08209085.1| ribonuclease E [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208132|gb|EGD58940.1| ribonuclease E [Novosphingobium nitrogenifigens DSM 19370]
          Length = 928

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 319/700 (45%), Positives = 409/700 (58%), Gaps = 35/700 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA H EETRV VL+ NR+EE DFES   KQIKGNIYLAKVTRVEPSLQAAFVD+GGN
Sbjct: 1   MLIDARHQEETRVAVLKGNRIEEFDFESSDHKQIKGNIYLAKVTRVEPSLQAAFVDFGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT-------------------------- 98
           RHGFL F EIHPDYYQIP  DR+ALL E                                
Sbjct: 61  RHGFLAFSEIHPDYYQIPKEDREALLAEEASHAEAEAALRAADEDDEDDFAEGDAFDDGE 120

Query: 99  ---DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155
              + +    D          ++  +         +E+++              +  +  
Sbjct: 121 GVTEVDGTEKDQVATIEGGVIENGDDAEEAATEEGEESDDGRRRGRGRRRQGRAQTKEAD 180

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                    +R+Y IQ+VI+ RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN+S 
Sbjct: 181 ELRARRLALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNSSH 240

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
           G  ISRKI +  DRK LK I   LE+P  M  I+RTAG  RTK EIKRDF+YL RLWD +
Sbjct: 241 GGGISRKINSAADRKRLKTIISELELPKSMSCIVRTAGLQRTKPEIKRDFDYLARLWDEI 300

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           RE  L+S AP L++ + +LIKRAIRD+Y ++I E++V GE GYR AKDFMKLLMPS+A+ 
Sbjct: 301 RERTLHSSAPALIHSDSDLIKRAIRDIYNREIEEVVVEGEAGYRAAKDFMKLLMPSHAKR 360

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           V+QY DP P+F R G E QL +++   V L S GY++IN TEALVSID+NSGRST+EH I
Sbjct: 361 VKQYVDPVPLFQRYGAEDQLTAMYDPVVQLRSGGYLVINPTEALVSIDINSGRSTKEHGI 420

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           E TAL TNLEAA EIARQLRLRD+AGL+V+DFIDME   N R VEK +KE+LK DRAR+Q
Sbjct: 421 EATALSTNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKEALKDDRARIQ 480

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           VG IS FGL+EMSRQR+R+ VLE+TT+ C +C G+G +R+ SS  LS LR +E+   +  
Sbjct: 481 VGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRMIEDEAAKGR 540

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE----KGSPV 571
              + ++   +  +Y+LN KR  + E E R+GV++ V+   E       +     K    
Sbjct: 541 GSIVTLYASQEAAIYVLNAKRGDLAEIEDRYGVTVEVIPEGENEGAKMRVASRGPKPEFT 600

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
                    V  D      + +++    D+        ++ E               R R
Sbjct: 601 PRFEPIVELVEEDVADEEDESDVDAEDNDDERGESRDGDNGE--GSGRRKRRRRRRGRNR 658

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            RR       ++  DA    +         D  +      
Sbjct: 659 DRREDGTPEGSETDDADGSDEGDEAGEDAGDDTETGASAE 698


>gi|56551089|ref|YP_161928.1| Rne/Rng family ribonuclease [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542663|gb|AAV88817.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 912

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 322/718 (44%), Positives = 423/718 (58%), Gaps = 30/718 (4%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           KMLIDA H EETRV V++ NR+EE DFES  ++Q+KGNIYLAKVTRVEPSLQAAFVDYGG
Sbjct: 5   KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           NR GFL F EIHPDYYQIP  D                  A      + +  ++   E  
Sbjct: 65  NRQGFLAFSEIHPDYYQIPRED----------------REALLREEEEYSARHNKQQESE 108

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                      E     AN+D + N+ +             +  Y IQ+VI+ RQ+LLVQ
Sbjct: 109 DDEEGEDLSDSEAIRNDANDDSLENLRN-------RRRHFGRHHYRIQDVIRRRQVLLVQ 161

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKEERGNKGAA+TTYLSLAGRY VLMPNTS G  ISRKI+N  DRK LK I   L +P+
Sbjct: 162 VVKEERGNKGAALTTYLSLAGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPS 221

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            MG I+RTAG  RTK EIKRDF+YL RLWD +RE  L S AP L+Y + +L+KRAIRD+Y
Sbjct: 222 SMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIY 281

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            ++I EI+V G+ GYR A++FMKLLMPS+ R VR Y DP P+F R G+E QL++++Q  V
Sbjct: 282 SREIDEILVEGDDGYRAARNFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIV 341

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY++IN TEALVSID+NSGRSTREH IE TA  TNLEAA EIARQLRLRD+AGLI
Sbjct: 342 QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLI 401

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDME   N R VEK +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ +LE++T  
Sbjct: 402 VIDFIDMESSANIRRVEKAMKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVP 461

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +C+G+G + +  S  L  LR +E+   +     I V T  D  +Y+LN+KR  +   E
Sbjct: 462 CPHCQGSGLMLTTPSAGLMALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIE 521

Query: 544 ARFGVSINVVIGIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
             +GV+I +       +    +E  G P    +     + + S     D   E   ++  
Sbjct: 522 TLYGVTILIDGDPLRGNNQISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIE 581

Query: 603 LLPIPKSESLED------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
              + ++    +       +++  + E      +R   +   +   +  +     + S  
Sbjct: 582 AEEVIEAPFRRNHRQNMARRNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEH 641

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 S             N  E      +E  + + P   TP  ES  S + P+ K
Sbjct: 642 SRRNRRSRRGRRGGRRRNGENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEK 699


>gi|85374182|ref|YP_458244.1| ribonuclease [Erythrobacter litoralis HTCC2594]
 gi|84787265|gb|ABC63447.1| ribonuclease [Erythrobacter litoralis HTCC2594]
          Length = 910

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 325/766 (42%), Positives = 437/766 (57%), Gaps = 65/766 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +MLIDA H EETRV VL+ NR+EE DFES   KQIKGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MATRMLIDARHTEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT-----------------DSEAV 103
           +GGNRHGFL F EIHPDYYQIP +DR+ LL E   A                   D    
Sbjct: 61  FGGNRHGFLAFSEIHPDYYQIPQADREKLLAEEAEAAEEEARLRAEEEDRGEMPGDEYDA 120

Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED------------ 151
            D+ +        +  LEE+         T EE  + +++D   + +D            
Sbjct: 121 EDESSGALAEDLAEDGLEEIDTSEKDKVATIEEGQLDSDDDDDDDSDDDDSDDDDDDDNN 180

Query: 152 --------------------------------VKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
                                            +  +     +  +R+Y IQ+VI+ RQ+
Sbjct: 181 GDNGKSRGRRGRGRGRGRHQGKGKGRGGKSRAKEVDAVRAKRQALRRRYKIQDVIQRRQV 240

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           +LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPN+S G  ISRKI++  DRK LK++   L
Sbjct: 241 MLVQVVKEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQVVSDL 300

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
            +P  MG+I+RTAG SRTK EIKRDF+YL RLWD +RE  L+S AP L++ + +LIKRAI
Sbjct: 301 SLPKQMGLIVRTAGLSRTKTEIKRDFDYLARLWDEIREKTLSSSAPSLIHSDSDLIKRAI 360

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD+Y ++I E++V GE+GY+ AK FMKLLMPS+AR V+ Y DP P+F R G E QL +++
Sbjct: 361 RDIYNREIEEVVVEGEEGYKLAKSFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMY 420

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++IN TEALVSID+NSGRST+EH IE TA  TN+EAA+EIARQLRLRD+
Sbjct: 421 DPVVQLKSGGYLVINPTEALVSIDINSGRSTKEHGIEQTATATNIEAAKEIARQLRLRDM 480

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           AGLIV+DFIDME   N R VE+ +K++LK DRAR+QVG IS FGL+EMSRQR+R+ VLE+
Sbjct: 481 AGLIVIDFIDMEYNSNVRKVERAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEA 540

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           TT+ C +C G G +R+ SS  LS LR +E+   +     I +   ++  +YLLN KRA +
Sbjct: 541 TTRDCPHCDGTGLVRTASSAGLSALRLIEDEAAKGKGTVISLKASTEAAVYLLNSKRADL 600

Query: 540 VEYEARFGVSINVVIGIELADKLFYI--EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            E E R+ V++ VV   E       +      P +A          D +    D   +  
Sbjct: 601 QEIEDRYNVTVEVVPEGEDEGAKMSVGSSGPRPSEAPKFEPIVDDDDDEEEIEDDASDDD 660

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +D+   P  +       +    ++++                 ++  D          +
Sbjct: 661 DEDDDGQPRKRRRRRRGGRGRNKNKQNDRSDGDDDDSDEDDSDDSETSDDDDDGKPKKRR 720

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGA--HGFTENYDVSIPPVSTPE 701
                            + +  ++ +     +E     +P V+ P+
Sbjct: 721 RRGGRRRGGRGRNKGDADSDSKDDESPLEEVSEQVKEDMPVVAGPD 766



 Score = 37.3 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 44/157 (28%), Gaps = 5/157 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              + +      V     +P   +      + +      K ++ ED +    +++ +   
Sbjct: 750 EVSEQVKEDMPVVAGPDGSPETAEAAAEEEKPKKRRAPRKKKADEDTKAQASADDKSEEK 809

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            KRR R+++   A +  D       +  +                   N     +     
Sbjct: 810 PKRRPRKKKVDEAAEKADDKASEKAAKKETEAKPKPKRATRSKKPAAGNDEGEASKTGKG 869

Query: 689 NYDVSIPPVSTP----EMESSNSSSDPIVKKTRWWKR 721
           +        +      +  +  +  D   ++  WW+R
Sbjct: 870 DAAAKPEAETDKGAGGKAANEKTDGDGKPRR-GWWQR 905


>gi|85708771|ref|ZP_01039837.1| ribonuclease [Erythrobacter sp. NAP1]
 gi|85690305|gb|EAQ30308.1| ribonuclease [Erythrobacter sp. NAP1]
          Length = 904

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 334/793 (42%), Positives = 436/793 (54%), Gaps = 78/793 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +MLIDA H EETRV VL+ NR+EE DFES   KQIKGNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MATRMLIDARHSEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALL-----------------KESNIAQTDSEAV 103
           +GGNRHGFL F EIHPDYYQIP SDR+ALL                 +E  I   +    
Sbjct: 61  FGGNRHGFLAFNEIHPDYYQIPQSDREALLAEEAEAAEEEARLRDEEEEEGITPGEEYDA 120

Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED------------ 151
            D+          +  LEE+         T E+     ++D   + +D            
Sbjct: 121 EDESAEALAEDLAEDGLEEIDTSDKDKVSTIEDGASDDDDDDDQDEDDSEDEGEESSEDG 180

Query: 152 -----------------------------------VKGGSPEDVPKKFKRQYCIQEVIKN 176
                                               +           +R+Y IQ+VI+ 
Sbjct: 181 EDGDDGEKKPRRGRRGRGRRRQGGKKGQQKGRSRAKEVDEVRAKRMALRRRYKIQDVIQR 240

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
           RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPN+S G  ISRKI +  DRK LK++ 
Sbjct: 241 RQVLLVQVVKEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKINSASDRKRLKQVV 300

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
             L +P  MG+I+RTAG SRTK EIKRDF+YL RLWD++R+  L S AP L++ + +LIK
Sbjct: 301 SDLSLPKSMGLIVRTAGLSRTKTEIKRDFDYLARLWDDIRQTTLASTAPSLIHSDSDLIK 360

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           RAIRD+Y ++I E++V GE+GY+ AK FMK+LMPS+AR V+ Y DP P+F R G E QL 
Sbjct: 361 RAIRDIYNREIEEVVVEGEEGYKSAKAFMKMLMPSHARRVKAYSDPVPLFQRYGAEDQLR 420

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
           +++   V L S GY+IIN TEALVSID+NSGRST+EH IE TAL TNLEAA EIARQLRL
Sbjct: 421 AMYDPMVQLKSGGYLIINPTEALVSIDINSGRSTKEHGIEQTALHTNLEAAREIARQLRL 480

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RD+AGL+V+DFIDME   N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R+ V
Sbjct: 481 RDMAGLVVIDFIDMEYNSNVRKVEKAMKEALKNDRARIQVGRISGFGLMEMSRQRLRTGV 540

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
           LE+TT+ C +C G G +R+ SS  LS LR +E+   +     I +   ++  +YLLN+KR
Sbjct: 541 LEATTRECPHCDGTGLVRTASSAGLSALRLIEDEAAKGKGSKICLEASTEAAVYLLNEKR 600

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596
             +VE E R+GV + V+   E       +    P          +  D +        + 
Sbjct: 601 HELVEIEQRYGVIVEVMPEGEDEGAKMKVSSQGPRPTEAPKFEPIVDDDEDEDDIPEDDG 660

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIR---------KRRRRRRRRRPATDHHDA 647
             +D+      K       +      + TG                       + +  D 
Sbjct: 661 SEEDDDAPKKKKRRRRRGGRGRGKKRQDTGSSEDGEDNSDDSDDSDASDGDEASEETSDD 720

Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE-----M 702
           G        +           E     +   LE  +    E+  V   P   PE      
Sbjct: 721 GEEKPKRRRRRGGRGRRKKTDETVTSEDAENLEEVSEQVKEDMTVVAGPDDAPETAGAMA 780

Query: 703 ESSNSSSDPIVKK 715
             +++ +D   ++
Sbjct: 781 AETDAKADGETEE 793



 Score = 40.7 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 41/156 (26%), Gaps = 12/156 (7%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+      +V         + A + + + +   + E      K +     +   V E   
Sbjct: 757 EQVKEDMTVVAGPDDAPETAGAMAAETDAKADGETEEAPKEEKPKRKRAPRKKKVEEAPA 816

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                    +    P  +          +  +  ++++                      
Sbjct: 817 EEAAPAEEAKVEEAPTEEEPKKKPARKRAPRKKKVEEAPAEEA------------PTEEA 864

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            TE+   +         + ++  +D   K+  WW+R
Sbjct: 865 KTEDAAPAETAEEPASDDKADEQADGGKKRGGWWQR 900


>gi|307317882|ref|ZP_07597320.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti AK83]
 gi|306896644|gb|EFN27392.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti AK83]
          Length = 923

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 336/697 (48%), Positives = 416/697 (59%), Gaps = 75/697 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVT------ 113
           YGGNRHGFL F EIHPDYYQIP +DRQALLK     A+ D +   D V            
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTV 120

Query: 114 -----------------------------------------IPNDHSLEEVAPIANFSQE 132
                                                       +    E  P  +   +
Sbjct: 121 AEVVAQAEAAEAAGEAAEAAAEKPKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDGEGD 180

Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI--------------QEVIKNRQ 178
             E + +   + +  +++  +    +D       +  I                 I+  +
Sbjct: 181 KNEMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPR 240

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
                    +R               + + L    S     S  + N      +      
Sbjct: 241 KQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 300

Query: 239 LEVPAGMGVILR-------------TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           L+    +  I R             TAGA+RTK+EIKRDFEYLMRLW+NVR L LNS AP
Sbjct: 301 LQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAP 360

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            LVYEEG+LIKR+IRDLY KDISEI+VSGE+GY+EAK FMK+LMPS+A++V+ Y D HPI
Sbjct: 361 CLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPI 420

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGRSTREH IEDTALQTNLE
Sbjct: 421 FSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLE 480

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG IS+FGLL
Sbjct: 481 AAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLL 540

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQRIR+SVLEST + C +C G G+IRSQSSVAL +LR +EE+LL+ T H+I V T  
Sbjct: 541 EMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTP 600

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           D+ LYLLNQKR++I +YE RFGVSI +     +  + F I++G PV+  V     +  + 
Sbjct: 601 DIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQILQFEP 660

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           +    ++ +     DE  +    +E  +  +     +
Sbjct: 661 EPEDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQ 697



 Score = 41.9 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 39/149 (26%), Gaps = 1/149 (0%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   ++ +        E V  D      P  E+  DI      E +    +  + R
Sbjct: 772 SRQDELAEAEGETGMAADAGEGVVDDAEAEVAPAEETSPDIAAAAAVEAAAEEPKPAKPR 831

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
           R R++       A  V +V+                +       LE            +I
Sbjct: 832 RSRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDLSAI 891

Query: 695 PPVSTPEMESSNSSSDP-IVKKTRWWKRR 722
                          +P   KK  WW+RR
Sbjct: 892 ATEPVVTSSKGEGEEEPTKPKKGGWWQRR 920


>gi|117925073|ref|YP_865690.1| ribonuclease E [Magnetococcus sp. MC-1]
 gi|117608829|gb|ABK44284.1| RNAse E [Magnetococcus sp. MC-1]
          Length = 984

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 263/713 (36%), Positives = 385/713 (53%), Gaps = 4/713 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +ML+DA+H EE RV +++D R+ +LD E+  K QIKGNIYL +VTRVEPSLQAAFVD
Sbjct: 1   MTKRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +   R GFL   +I+P YY   F      +++ +  +   +   +          ++   
Sbjct: 61  FNDGRQGFLSVNDINPKYYPPEFRPEPDPIEDMDEQEEPEDLSDEMDGEEGDDSDDEPGN 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPED-VPKKFKRQYCIQEVIKNRQI 179
           E+ A       +   E+         S     +  + E       +R   IQ+++K  Q+
Sbjct: 121 EDGADDDASQGDASSEAEAKPREPSQSERPARRPRNNERANRGNRRRHIPIQDILKKGQL 180

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LL+Q+VKE RG KGA++TT +SLAGRY+VL+P  S G  ISRKI +   RK LK +   +
Sbjct: 181 LLLQVVKEARGTKGASLTTNISLAGRYTVLLPENSGGGGISRKIMDNQARKALKTMLTEM 240

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
           E+P  + +I+RTAG  RTK EI RD  YL RLW  ++E       P L++EEG+LI R I
Sbjct: 241 EIPQEVSLIIRTAGMERTKREIARDMSYLTRLWKTIQEKVEQHNTPTLIHEEGDLIIRTI 300

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDLY  D+ EI++ G + YR  KDFM+LLMP Y + V+ Y+D  P+F R  +E Q++S+H
Sbjct: 301 RDLYSTDMEEILIDGGEAYRRGKDFMRLLMPRYVKAVQPYKDRIPLFSRYQVEHQIESMH 360

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
           +  ++L + GY++I  TEALVSID+NSGRST+E  +E+TA +TN++A +EIARQLRLRDL
Sbjct: 361 ERTISLKAGGYLVIEPTEALVSIDINSGRSTKEKNVENTAFKTNMQAVDEIARQLRLRDL 420

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GLIV+DFIDMEEKK+N  VEK+LKE+LK DRA++Q+G IS FGLLE+SRQR++ +  ES
Sbjct: 421 GGLIVIDFIDMEEKKHNLEVEKRLKEALKGDRAKIQLGKISQFGLLELSRQRMKPAFNES 480

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             +VC  C G G IRS  S A+ + R +EE +       +I    +DV  YL N+KR  +
Sbjct: 481 NREVCPRCTGLGTIRSVESTAIRLFRCIEEDISSGRFSKLIYFAPADVANYLHNRKRFQM 540

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW- 598
           V+ E    + + + I  EL    F  E+ +          +     +     +  E    
Sbjct: 541 VQLEQENNLELLIEIDPELQTPHFRKERIARPVQDEPVVKERPEPEEPTLVSEEDEPQEL 600

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
            D+A     ++ +    +         G  R+            +       +     + 
Sbjct: 601 MDDAAEGGEENRTDPKKRKRRRKRRRGGREREEGAMGEETTSLNEEEMPSTEAPAMDDEA 660

Query: 659 VIDDSFDMYMEPSDITNHNLLENGA--HGFTENYDVSIPPVSTPEMESSNSSS 709
             +   D    PS+                      +    S P ++S +   
Sbjct: 661 DDEGDGDEQANPSESAETTPDSPSKRRRRRRRRRRSTSQEESAPRLDSGDEEQ 713


>gi|150396178|ref|YP_001326645.1| ribonuclease [Sinorhizobium medicae WSM419]
 gi|150027693|gb|ABR59810.1| ribonuclease, Rne/Rng family [Sinorhizobium medicae WSM419]
          Length = 944

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 352/792 (44%), Positives = 446/792 (56%), Gaps = 84/792 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTH--------- 109
           YGGNRHGFL F EIHPDYYQIP +DRQALL  +     + D     +             
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARREDDIEPMETSAERKSASSTDS 120

Query: 110 --------------------------------------------GDVTIPNDHSLEEVAP 125
                                                        +     +    E  P
Sbjct: 121 VAEVVAQAEAAEAAGEAAEAQAAAEKPKAKAKPKRTRRAKPKASEETAASQESEAPEGGP 180

Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI--------------- 170
             +   +  E + I   + +  +V+  +    +D       +  I               
Sbjct: 181 SEDGESDKSEMAAIVETDSISEDVDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVAE 240

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
           ++  K R+   +Q V + R      V        + + L    S     S  + N     
Sbjct: 241 RQFRKPRKQYRIQEVIKRRQILLVQVAKEER-GNKGAALTTYLSLAGRYSVLMPNTARGG 299

Query: 231 NLKEIARGLEVPAGMGVILR-------------TAGASRTKIEIKRDFEYLMRLWDNVRE 277
            +      L+    +  I R             TAGA+RTK+EIKRDFEYLMRLW+NVR 
Sbjct: 300 GISRKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRT 359

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
           L LNS AP LVYEEG+LIKR+IRDLY KDISEI+VSGE+GY+EAK FMK+LMPS+A++V+
Sbjct: 360 LTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQ 419

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
            Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGRSTREH IED
Sbjct: 420 PYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIED 479

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           TALQTNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG
Sbjct: 480 TALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVG 539

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
            IS+FGLLEMSRQRIR+SVLEST + C +C G G+IRSQSSVAL +LR +EE+LL+ T H
Sbjct: 540 RISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTH 599

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
           +I V T  D+ LYLLNQKR++I +YE RFGVSI +     +  + F I++G PV+  V  
Sbjct: 600 DISVRTTPDIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRI 659

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
              +  + +    ++  E + ++E      +  + E         +  G  +++RRRRRR
Sbjct: 660 DQILQFEPEPEEEEEEEEVLIEEELDDEEAEETAAEHQDQQKGQPDDQGGRKRKRRRRRR 719

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
            + A    DA       + ++   D         ++   + L   +    +         
Sbjct: 720 GKGAGQGADAVSAESADAAEDEAGDEAAADDAEDELDAADSLNGDSEQKRKRRRRGKRGG 779

Query: 698 STPEMESSNSSS 709
                E    S 
Sbjct: 780 RRNRQEELAGSE 791



 Score = 46.1 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 41/158 (25%), Gaps = 7/158 (4%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           Q  +         +     +   E V    A +P   +           +         +
Sbjct: 784 QEELAGSEGETGATAETVEEPGEESVDSTAAEIPAVSAAEEAPADVAAAAAVEGVAEEPK 843

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL------ENGAHG 685
             + RR R  T   +   V+     + V++   +       I    +       E     
Sbjct: 844 PAKPRRSRKKTTKTEEPAVNADEVAEKVVEAQPEPAEPAPQIVEEAVEEAVEDLEGAKPA 903

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDP-IVKKTRWWKRR 722
            +     +I            S  +P   KK  WW+RR
Sbjct: 904 RSNRDLSAIASKPVVTSSKGESEEEPTKPKKGGWWQRR 941


>gi|296283817|ref|ZP_06861815.1| ribonuclease, Rne/Rng family [Citromicrobium bathyomarinum JL354]
          Length = 976

 Score =  422 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 314/654 (48%), Positives = 400/654 (61%), Gaps = 54/654 (8%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA H EETRV VL+ NR+EE DFES   KQIKGNIYLAKVTRVEPSLQAAFVD+GGN
Sbjct: 1   MLIDARHAEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVDFGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQ------------------TDSEAVADD 106
           RHGFL F EIHPDYYQIP  DR ALL E   A                    + +A  D+
Sbjct: 61  RHGFLAFSEIHPDYYQIPKEDRDALLAEEAEAAEEEERLRAEEEEAGHMPGDEYDAEDDE 120

Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEE------------------------------ 136
                     +  LEE+         T EE                              
Sbjct: 121 SAEALAEDLAEDGLEEIDTSDKDKVSTIEEGQLSSDDDDDDDDDDSNGDDADASEGGNRR 180

Query: 137 ------SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190
                                 +        +  +R+Y IQ+VI+ RQ+LLVQ+VKEERG
Sbjct: 181 RGRRGRGGPRRQGQGKPRSRAKEVDEARARRQALRRRYKIQDVIQRRQVLLVQVVKEERG 240

Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250
           NKGAA+TTYLSLAGRY+VLMPN+S G  ISRKI++  DRK LK++   L +P  MG+I+R
Sbjct: 241 NKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQVVGDLNLPRTMGLIVR 300

Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310
           TAG SRTK EIKRDF+YL RLWD +RE  L S AP L++ + +LIKRAIRD+Y ++I E+
Sbjct: 301 TAGLSRTKTEIKRDFDYLARLWDEIRERTLGSSAPSLIHSDSDLIKRAIRDIYNREIEEV 360

Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
           +V GE+GY+ A+ FMKLLMPS+AR V+ Y DP P+F R G E QL ++++  V L S GY
Sbjct: 361 VVEGEEGYKSARAFMKLLMPSHARRVKAYSDPVPMFQRYGAEDQLRAMYEPVVQLKSGGY 420

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           ++IN TEALVSID+NSGRST+EH IE TA  TNLEAA+EIARQLRLRD+AGL+V+DFIDM
Sbjct: 421 LVINPTEALVSIDINSGRSTKEHGIEQTATATNLEAAKEIARQLRLRDMAGLVVIDFIDM 480

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
           E   N R VE+ +K++LK DRAR+QVG IS FGL+EMSRQR+R+ VLE+TT+ C +C G 
Sbjct: 481 EHNSNIRKVERTMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECPHCDGT 540

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
           G +R+ SS  LS LR +E+   +     I +   ++  +YLLN KRA + E E R+GV++
Sbjct: 541 GLVRTASSAGLSALRLIEDEAAKGKGTTITLSASTEAAVYLLNAKRAELQEIEQRYGVTV 600

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
            VV   E       +    P          +  D     ++   +    ++   
Sbjct: 601 EVVPEGEDEGAKMSVASSGPRPTEAPKFEPIVIDEAEDDFEDEADDSDTEDEDQ 654



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 39/155 (25%), Gaps = 2/155 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K                 +  PS     +   +++A             +     E++  
Sbjct: 820 KDGAEDKPAPKRRSRAKKADTPSQAAAGDDKAEEQAEEKPAPKRRSRAKKPVEGEEQADA 879

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +K   R+   R       A   ++    +++   +                 + +   
Sbjct: 880 GEKKAPARKPSARKTPAKPAASKQTEAQLTEDIAVVAGPEDTPADPQEAAEKSPSPSPAP 939

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                 +    +    + ++    P  ++  WW+R
Sbjct: 940 APAPAPAPSASADGSDDGNSDDDKP--RRGGWWQR 972


>gi|254455658|ref|ZP_05069087.1| ribonuclease E/G [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082660|gb|EDZ60086.1| ribonuclease E/G [Candidatus Pelagibacter sp. HTCC7211]
          Length = 608

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 236/565 (41%), Positives = 354/565 (62%), Gaps = 19/565 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   + IDASH  ETRVV+  D+ +E+ ++E      IK NIYL KV+R+EPSLQAAF+D
Sbjct: 1   MEKNLYIDASHPNETRVVLKSDDNIEDYEYEGLKNNLIKNNIYLGKVSRIEPSLQAAFID 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G  RHGFL F +I  DYYQIP +D   L K     +   E ++ +V   +     +  L
Sbjct: 61  FGRERHGFLSFNDIQSDYYQIPKAD---LEKIKEEEEKAREELSREVQAKEEENIAEGKL 117

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE  PI     + E+E     ++++      ++    +   K   ++Y IQEVIK  Q++
Sbjct: 118 EENDPI-----DVEKEISEEKDDEIDQKNNAIEEKEQKKENKFRFKRYKIQEVIKPNQVI 172

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++K+ERG KGAA++T++S+AG+Y VLMPNT KG  ISRKI NP DRK ++ I   +E
Sbjct: 173 LVQVIKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPSDRKKIRTILNEIE 232

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I+RTAG+++TK EI  D + L++ W  +++ A+NS+AP L+++E  +IKR +R
Sbjct: 233 IPKEMGLIVRTAGSNKTKNEINNDLDTLIKTWSQIKDNAINSIAPSLIHQESEIIKRTLR 292

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y  +   IIV G +GY++A+ FMK++MPS+ + V++Y    P+F    IE +L+ +  
Sbjct: 293 DMYDDNTQNIIVEGNEGYKKAQAFMKMIMPSHVKKVKKYRGKVPLFINQNIEQKLNQIFD 352

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
           +E+ L S GY++IN TEALVSID+NSG S +   +E TAL TN+EAA+EIARQ+++RDL+
Sbjct: 353 SEIKLKSGGYLVINPTEALVSIDINSGSSIKGKNVESTALDTNIEAAKEIARQIKIRDLS 412

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLI++DFIDM    N R VE+KLKE  + DRAR+Q+G ISNFGLLEMSRQR+R S ++  
Sbjct: 413 GLIIIDFIDMLSYANRRLVERKLKEKCRTDRARIQIGRISNFGLLEMSRQRLRESAIKWK 472

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
                         +  S A  +L++VE   +   A  + +     +  +L       + 
Sbjct: 473 VT-----------LTDESFAQKLLKTVELKAVINKAKFVELRVCEKISDFLKENFVDDLT 521

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
            +E +  ++I++V    L    + I
Sbjct: 522 YFEKKNKMTIDIVSDSSLIIPEYII 546


>gi|71083434|ref|YP_266153.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062547|gb|AAZ21550.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1062]
          Length = 619

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 228/608 (37%), Positives = 365/608 (60%), Gaps = 19/608 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   + IDASH  ETRVV+     +E+ ++E      IK NIYL KV+RVEPSLQAAF+D
Sbjct: 1   MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G +RHGFL F +I  DYYQIP SD   + +E   A+ +    ++     ++   N +  
Sbjct: 61  FGRDRHGFLSFNDIQSDYYQIPQSDLAKIKEEEEKAREELLKKSELEEQKNINEGNLNIN 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS--------PEDVPKKFKRQYCIQE 172
           + V        ET ++    ++  +    +  +            +   +   ++Y IQE
Sbjct: 121 DPVEVKLESEFETNDQITEGSDTPITDTTQVDEDKEQPSPVLHGRKPETRFRSKRYKIQE 180

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
           VIK  Q++L+Q++K+ERG KGAA++T++S+AG+Y VLMPNT KG  ISRKI NP +RK +
Sbjct: 181 VIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPGERKKI 240

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           + I   + +P  MG+I+RTAG+++TK +I  D + L++ W+ ++E ALNS+AP L+++E 
Sbjct: 241 RTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKENALNSIAPSLIHQES 300

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
           ++IKR +RD+Y +  + I++ G +GY++A++FMKL+MPS+ + +++Y +  P+FF+  IE
Sbjct: 301 DIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPSHVKKIKKYREKVPLFFKENIE 360

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
            +L+ ++ +E+ L S GY++IN TEALVSID+NSG S ++  +E TAL TNLEAAEEI+R
Sbjct: 361 EKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVESTALDTNLEAAEEISR 420

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           Q+++RDL+GLI++DFIDM    N R VE+KLKE  + DRAR+Q+G IS FGLLEMSRQR+
Sbjct: 421 QIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIGRISTFGLLEMSRQRL 480

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           R S ++                +  S A+ IL+ VE   +   A  + +     +  ++ 
Sbjct: 481 RESAVKWKVT-----------LTDESFAMKILKLVEVKAVLTKAKFVELKICEKISDFMK 529

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
                 +  +E +  + I+++    L    + I+  +  +  +     +          K
Sbjct: 530 ENFIEDLKYFEEKNLIKIDIIADNSLIIPEYIIDLQNKTKKTIEIVQHIEKLKNLEEQKK 589

Query: 593 NIECVWQD 600
            ++     
Sbjct: 590 EVKSFESP 597


>gi|91762143|ref|ZP_01264108.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717945|gb|EAS84595.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1002]
          Length = 619

 Score =  417 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 357/574 (62%), Gaps = 19/574 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   + IDASH  ETRVV+     +E+ ++E      IK NIYL KV+RVEPSLQAAF+D
Sbjct: 1   MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G +RHGFL F +I  DYYQIP SD   + +E   A+ +    ++     ++   N    
Sbjct: 61  FGRDRHGFLSFNDIQSDYYQIPQSDLAKIKEEEEKAREELLKKSELEEQKNINEGNLDIN 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS--------PEDVPKKFKRQYCIQE 172
           + V        ET ++    ++  +    +  +            +   +   ++Y IQE
Sbjct: 121 DPVEVKLESEFETNDQVTEGSDTPITDTTQVDEDKEQPSPVLHGRKPETRFRSKRYKIQE 180

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
           VIK  Q++L+Q++K+ERG KGAA++T++S+AG+Y VLMPNT KG  ISRKI NP +RK +
Sbjct: 181 VIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPGERKKI 240

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           + I   + +P  MG+I+RTAG+++TK +I  D + L++ W+ ++E ALNS+AP L+++E 
Sbjct: 241 RTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKENALNSIAPSLIHQES 300

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
           ++IKR +RD+Y +  + I++ G +GY++A++FMKL+MPS+ + +++Y +  P+FF+  IE
Sbjct: 301 DIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPSHVKKIKKYREKVPLFFKENIE 360

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
            +L+ ++ +E+ L S GY++IN TEALVSID+NSG S ++  +E TAL TNLEAAEEI+R
Sbjct: 361 EKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVESTALDTNLEAAEEISR 420

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           Q+++RDL+GLI++DFIDM    N R VE+KLKE  + DRAR+Q+G IS FGLLEMSRQR+
Sbjct: 421 QIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIGRISTFGLLEMSRQRL 480

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           R S ++                +  S A+ IL+ VE   +   A  + +     +  ++ 
Sbjct: 481 RESAVKWKVT-----------LTDESFAMKILKLVEVKAVLTKAKFVELKICEKISDFMK 529

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
                 +  +E +  + I+++    L    + I+
Sbjct: 530 ENFIEDLKYFEEKNLIKIDIIADNSLIIPEYIID 563


>gi|87306478|ref|ZP_01088625.1| ribonuclease E [Blastopirellula marina DSM 3645]
 gi|87290657|gb|EAQ82544.1| ribonuclease E [Blastopirellula marina DSM 3645]
          Length = 588

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 195/576 (33%), Positives = 309/576 (53%), Gaps = 3/576 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLI+ S  EE R+ ++ D  +EE   E   +    GNIY   V  +EPS+QAAFVD
Sbjct: 1   MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--DVTHGDVTIPNDH 118
           +G  ++GFL   ++ P Y++    D    L +           AD  D    +++  +  
Sbjct: 61  FGVGKNGFLHISDVEPQYFRQGGYDPAEQLDDDFGGSYGGATAADFSDDDEEEISDSSGD 120

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
             E+     +      ++             +       +    + + +  IQE+ K   
Sbjct: 121 DEEDKPDANDDGDGDSDDDAPPKPPQSRGRGQRRPQQRRQRPGMRPRVKPPIQEIFKRGD 180

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
            +LVQ++KE  G+KG  ++TY+S+ GRY VLMP   +   +SRKI +   R+ L+     
Sbjct: 181 EVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVG-VSRKIEDDQVRRRLRSTLLE 239

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
           L  P G+G I+RTAG  R K E+ RD  YL+RLW  +     N+  P  +YEE ++I R 
Sbjct: 240 LSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTTGPCDIYEESDMIIRT 299

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           IRD++  D+  I V  E  Y  AK+F++L+MP +   +++YE   P+F +  ++ ++  +
Sbjct: 300 IRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKDPLFHKYHLDEEIARI 359

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
           +Q EV L   G ++I+QTEALV+IDVNSG    +   E+ A Q N+ AA+EIARQLRLRD
Sbjct: 360 NQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAYQLNMMAAKEIARQLRLRD 419

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           L G++V DFIDM  +K+ R+VE+ L++S+K+DRAR ++   S FGL+EM+RQRIR S+  
Sbjct: 420 LGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFGLIEMTRQRIRPSLKR 479

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           S  K C  CKG G ++S  S+A+ ++R +        A ++ +  + +V  YL N+KR  
Sbjct: 480 SVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVTIRVNDEVATYLNNKKRRE 539

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           +   E    + + +        +   +E        
Sbjct: 540 LARIEEDTNIVVQIYGSESFYPEHLEVECVDADGRR 575


>gi|157803476|ref|YP_001492025.1| ribonuclease E [Rickettsia canadensis str. McKiel]
 gi|157784739|gb|ABV73240.1| Ribonuclease E [Rickettsia canadensis str. McKiel]
          Length = 688

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 265/699 (37%), Positives = 402/699 (57%), Gaps = 12/699 (1%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLA+VTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPTETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAQVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S+R   +         +  V DD         +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFPEIALANITVEDDQEKPIAIYDSLVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE   I   + E   ES + +  ++    +     S  D      +QY +QEVI+  QI
Sbjct: 121 SEE---IDLKTIEDLVESKLQSELNLEGADDIEIIQSGIDSNIPQYKQYKVQEVIRKNQI 177

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 178 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNVEERKRLKDILNKI 237

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                  VI+RTAG   + +++K+D+ YL+RLW+ +R+  +   AP  ++EE ++I++ I
Sbjct: 238 VSGNSYSVIVRTAGRGSSSLDLKKDYNYLVRLWNKIRKSTIKFPAPCFIHEEDSIIRKTI 297

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD+   ++ E+++ G++ Y +A  FM+ L+PS    ++ +++  PIF +  +E QL  L+
Sbjct: 298 RDMCDHNVKEVVIQGQEAYDDAAKFMQDLLPSELSKLKAHKNKTPIFTQFQVEEQLVKLY 357

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
           Q  VTLPS GY++IN TEAL+SIDVNSG+ST E  IE+TAL+TNLEAA+ +A+Q++LRDL
Sbjct: 358 QPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKAVAKQVKLRDL 417

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           +GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS LE+
Sbjct: 418 SGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFLET 477

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
            + +C++C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA I
Sbjct: 478 NSSICSHCNGKGVIRANDANAMLILRTIENEIFEERIDVINVFTNIASVIYLLNNKRAEI 537

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
              E ++ + +N           + IEK   ++   N  + V    Q  S D   +   +
Sbjct: 538 KFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNSVKPVIQNHSADYTEDEPQK 597

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
           ++           + + +N+  EE    +  ++   +  +         V  +   I+N 
Sbjct: 598 EQL---RKNKHKWKTVNNNVSVEEKNKKLETKQEVEQSTQNV-----EVVNEESQIIEND 649

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           +  +     +       N   N         D +    S
Sbjct: 650 VVTAEVPATKTLKRRYRNKKSNKKGAANTATDTAKNADS 688


>gi|148284838|ref|YP_001248928.1| ribonuclease E [Orientia tsutsugamushi str. Boryong]
 gi|146740277|emb|CAM80650.1| Ribonuclease E [Orientia tsutsugamushi str. Boryong]
          Length = 675

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 246/692 (35%), Positives = 388/692 (56%), Gaps = 20/692 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  ++L+DAS+  ETRV ++ +N R+ E+++E+  K  IKGNIYLA +T++EPSLQAAF+
Sbjct: 1   MTKRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           DY   + GFLPF EIHPDYY    +          + +  SE + +  +  ++    D  
Sbjct: 61  DYSNGKSGFLPFSEIHPDYYNNVTNSL--PFDTVPLVEITSEEIKEQESCKNIQNEEDID 118

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE     +      + +    N+++    +       E +P    +Q  IQ+VI + QI
Sbjct: 119 TEESDADDSKIITAFKNTTNIQNDEIEPVSKQNSQEIAEFLPP--HKQQEIQDVISSGQI 176

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           +LVQ  KE RGNK A+ TTY+SL+G+Y +L PN S    ISR+ITN  DRK LK I   L
Sbjct: 177 VLVQATKESRGNKNASFTTYISLSGKYCILTPNLSNHSGISRRITNSEDRKQLKTIVGNL 236

Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
             ++     VI+RTAG+ RT  EIK+DF YL++LW+ +   A  +  P  +Y E ++I++
Sbjct: 237 ISKITKTSSVIIRTAGSRRTAYEIKKDFNYLLKLWNEIINTAKQAKPPAFIYVENDIIRK 296

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            I D+Y   + E+I+ G+  Y  A  FM  ++PS    +++++   PIF +  +E QL +
Sbjct: 297 TILDIYNISVQEMIIQGKAAYDYAVKFMNAILPSEVHKIKEHKSTIPIFAQYNLEEQLAT 356

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L++  VTLPS GY++IN TEAL++IDVNSG+ T E  IE+TA++TNLEAA+EI+ Q++LR
Sbjct: 357 LYKPIVTLPSGGYIVINPTEALIAIDVNSGKDTSEQNIEETAVKTNLEAAKEISHQIKLR 416

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           +L+GLI +DFI M + KN++ +EK  K+ L KD+A++QV +I++FG+L++SRQR+R S L
Sbjct: 417 NLSGLITIDFICMTDSKNHKLIEKSFKKYLAKDKAKIQVDSINSFGVLQLSRQRLRPSFL 476

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           ES + +C++C G G +R++ S A+ ILR++E  +    ++ I V+ H   V Y+LN KR 
Sbjct: 477 ESNSVICSHCSGKGIVRAEESNAMIILRTIENEIHTSKSNIINVYAHLHSVTYILNNKRT 536

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I + E ++ V +      +     F IEK             V   +         + V
Sbjct: 537 EIADIEKKYNVQLKFYNDFQSTSDSFSIEK-------------VTLSASTTKSALTEQPV 583

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
                LL   ++ + + I +  +S      I+  +RR R++    D      V  +S   
Sbjct: 584 VTSAKLLENIENPASQAISNTNISGSKILSIKSNKRRARKQTHNLDLSAEQSVQQISKPV 643

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           N   D+                +      T++
Sbjct: 644 NDKKDNASNNKNQPTRPIKRRTKPSILETTKS 675


>gi|15604126|ref|NP_220641.1| ribonuclease E (rne) [Rickettsia prowazekii str. Madrid E]
 gi|3860818|emb|CAA14718.1| RIBONUCLEASE E (rne) [Rickettsia prowazekii]
 gi|292571853|gb|ADE29768.1| Ribonuclease E [Rickettsia prowazekii Rp22]
          Length = 683

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 255/676 (37%), Positives = 393/676 (58%), Gaps = 33/676 (4%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MHKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P ++    +         +  + DD     +   +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPTAESTFPVNAFPEIALANITIEDDQEKPSIIYDSLID 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E    S  N   ++  ++      ++     + Y +Q+VI+  Q+
Sbjct: 121 NEEID--LKTIEDLVESKFQSEFNLESADDIEIIQSCTTELNISQYKPYKVQDVIRKNQV 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPNTS    ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNTSSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                    VI+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VSIQKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFSAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++ Y +A  FM+ L+PS    ++++++  PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELAKLKEHKNKTPIFTQFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ ++VC +C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA
Sbjct: 479 ETNSEVCFHCNGKGVIRASDANAMLILRTIENEIFEERIDIINVFTNIVSVIYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK   ++   +            +     E  
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNSVNTVKPVIQNHSADYTEEEPK 598

Query: 598 WQ----------------------------DEALLPIPKSESLEDIQDNIVSEESTGVIR 629
            +                            +     +   E ++ ++ N +S E   V  
Sbjct: 599 KEQLRKNKHKWKTANNNIVNAVKDQSLGVKELVAQTVSVVEEMKVVESNGISLEEVQVAP 658

Query: 630 KRRRRRRRRRPATDHH 645
           K+ +R+ R + +    
Sbjct: 659 KKAKRKYRNKNSNKKR 674


>gi|157964327|ref|YP_001499151.1| ribonuclease E [Rickettsia massiliae MTU5]
 gi|157844103|gb|ABV84604.1| Ribonuclease E [Rickettsia massiliae MTU5]
          Length = 690

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 259/702 (36%), Positives = 391/702 (55%), Gaps = 16/702 (2%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P  +R   +         +  V DD         +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPTLERNFPVNAFPEIALANITVEDDKEKPAAIYDSLVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E    S  N   ++  ++      +      +QY +QEVI+  QI
Sbjct: 121 SEEID--LKTIEDLVESKFQSELNLEAADDIEIIQSGTPESNIPQYKQYKVQEVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LL Q+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 179 LLAQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                     I+RTAG   + +++K+D+ YL RLW+ +R+  L   AP  ++EE ++I++
Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTLKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++GY +A  FM+ L+PS    +++++   PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYEDASKFMQDLLPSELAKLKEHKSKTPIFTKFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA
Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERTDVINVFTNIVSVIYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK   ++   N  + V    Q  S D   E +
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNSVKPVIQNHSADYTEEEL 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +  +     +   +  K                   V +   + 
Sbjct: 599 KKEQLRKNKHKWKTANNSNNIANEVKDKSLEAKES-----------VEQTVSVVEEVKVV 647

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                  +    P         +        N        + 
Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKRPSNTVEDTEKNAE 689


>gi|189183199|ref|YP_001936984.1| ribonuclease E [Orientia tsutsugamushi str. Ikeda]
 gi|189179970|dbj|BAG39750.1| ribonuclease E [Orientia tsutsugamushi str. Ikeda]
          Length = 675

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 247/692 (35%), Positives = 388/692 (56%), Gaps = 20/692 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  ++L+DAS+  ETRV ++ +N R+ E+++E+ +K  IKGNIYLA +T++EPSLQAAF+
Sbjct: 1   MTKRILVDASYPNETRVALIDNNCRIAEIEYETANKHLIKGNIYLATITKIEPSLQAAFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           DY   + GFLPF EIHPDYY    +          + +  SE + +  +  ++    D  
Sbjct: 61  DYSNGKSGFLPFSEIHPDYYNNVTNSL--PFDTIPLVEITSEEIKEQESCKNIQNEEDID 118

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE     +      + +    N+++    +       E +P    +Q  IQ+VI + QI
Sbjct: 119 TEESDADDSKIITAFKNTTNIQNDEIEPVSKQNSQEIAESLPP--HKQQEIQDVISSGQI 176

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           +LVQ  KE RGNK A+ TTY+SL+G+Y +L PN S    ISR+ITN  DRK LK I   L
Sbjct: 177 VLVQATKESRGNKNASFTTYISLSGKYCILTPNLSNHSGISRRITNSEDRKQLKTIVGNL 236

Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
             ++     VI+RTAG+ RT  EIK+DF YL++LW+ +   A  +  P  +Y E ++I++
Sbjct: 237 ISKITKTSSVIIRTAGSRRTAYEIKKDFNYLLKLWNEIINTAKQAKPPAFIYVENDIIRK 296

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            I D+Y   + E+I+ G+  Y  A  FM  ++PS    +++++   PIF +  +E QL +
Sbjct: 297 TILDIYNISVQEMIIQGKAAYDYAVKFMNAILPSEVHKIKEHKSTIPIFAQYNLEEQLAT 356

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L++  VTLPS GY++IN TEAL++IDVNSG+ T E  IE+TA++TNLEAA+EI+ Q++LR
Sbjct: 357 LYKPIVTLPSGGYIVINPTEALIAIDVNSGKDTSEQNIEETAVKTNLEAAKEISHQIKLR 416

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           +L+GLI +DFI M + KN++ +EK  K+ L KD+A++QV +I++FG+L++SRQR+R S L
Sbjct: 417 NLSGLITIDFICMTDSKNHKLIEKSFKKYLAKDKAKIQVDSINSFGVLQLSRQRLRPSFL 476

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           ES + +C++C G G +R++ S A+ ILR++E  +    ++ I V+ H   V Y+LN KRA
Sbjct: 477 ESNSVICSHCSGKGIVRAEESNAMIILRTIENEIHTSKSNIINVYAHLHSVTYILNNKRA 536

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I + E ++ V +      +     F IEK             V   +         + V
Sbjct: 537 EIADIEKKYNVQLKFYNDFQSTSDSFSIEK-------------VTLSANTTKSALTEQPV 583

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
                LL   ++   + I +  +S      I+  +RR R+     D      V  +S   
Sbjct: 584 VTSAKLLENIENPGSQAISNTNISVSKILSIKSNKRRPRKPTLKLDLPAEQSVKQISKPV 643

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           N   D+                +      T++
Sbjct: 644 NDKKDNAPNNKNQPTRPIKRRTKPSILETTKS 675


>gi|229586506|ref|YP_002845007.1| Ribonuclease E [Rickettsia africae ESF-5]
 gi|228021556|gb|ACP53264.1| Ribonuclease E [Rickettsia africae ESF-5]
          Length = 690

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 260/703 (36%), Positives = 394/703 (56%), Gaps = 18/703 (2%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S+R   +         +  V DD     V   +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAVIYDSLVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E +  S  N   ++  ++      +      +QY +QEVI+  QI
Sbjct: 121 SEEID--LKTIEDLVESTFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                     I+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++GY +A  FM+ L+PS    +++++   PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYADASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL++IDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAKELAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+   +C++C G G IR+  + A+ ILR++E  + +     I V T+   VLYLLN KRA
Sbjct: 479 ETNAAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVLYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK    +   N  + V    Q  + D   E +
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNADYTAEDL 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +  +     +   +             A +  +  V        
Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSL------------EAEESVEQTVSVVEEVQV 646

Query: 658 NVIDDSFDM-YMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
              +   +     P         +        N        + 
Sbjct: 647 VESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTETNAE 689


>gi|91205031|ref|YP_537386.1| ribonuclease E [Rickettsia bellii RML369-C]
 gi|91068575|gb|ABE04297.1| Ribonuclease E [Rickettsia bellii RML369-C]
          Length = 693

 Score =  400 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 259/690 (37%), Positives = 395/690 (57%), Gaps = 5/690 (0%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  K+Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S++   +         +  + D+      T  +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPASEKNFPINAFPEIVPPNIILDDEDEVRAATSYDPLI 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
             E   +       E +     N +   ++E ++    E++P+   +QY +Q+VI+  QI
Sbjct: 121 DGEEIDLKAIEDLVESKFQSELNLEAADDIEIIQSDKEENIPQ--YKQYKVQDVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN +    ISRKI+N  +RK LK I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYVSLAGKYCVLMPNKAAQNGISRKISNGDERKRLKNILNKV 238

Query: 240 EVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                    VI+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VNGDKSPYSVIIRTAGRGCSTLDLKKDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+I+ G++ Y +A  FM+ L+PS    +++++   PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVIIYGQEAYEDAAKFMQDLLPSEMTKLKEHKSKTPIFTKFQVEEQLIK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSGRST E  IE+TAL+TNLEAA+EIARQ++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM+E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMDETKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G +R+  S A+ ILR++E  + +     I V  +   V+YLLN KR 
Sbjct: 479 ETNSSICSHCNGKGVVRADESNAMLILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQ 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK   ++   N  +      Q  S D   E  
Sbjct: 539 EIKFIEEKYNIRLNFYSDPNATSDSYSIEKVKLLKKNNNNLNAGKPVIQNHSADYTEEEP 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +       ++    I++ + +               V       
Sbjct: 599 KKEQLRKNKYKWKTGNNNNVVSEEKKKVPEIKEVKDQVVSVVKEEVEITDDGVVVEEKPL 658

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                      + +        E+     +
Sbjct: 659 PKKTKRRYRNKKSNKNRPVANKESSVAEDS 688


>gi|157825471|ref|YP_001493191.1| ribonuclease E [Rickettsia akari str. Hartford]
 gi|157799429|gb|ABV74683.1| ribonuclease E [Rickettsia akari str. Hartford]
          Length = 690

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 263/698 (37%), Positives = 393/698 (56%), Gaps = 16/698 (2%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG  + GFLPF EIHP+YY +P S+R   +         +  V DD     V   +   
Sbjct: 61  EYGMEKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAVIYDSFVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E    S  N   ++  ++      +      +QY +QEVI+  QI
Sbjct: 121 SEEID--LKTIEDLVESKFQSELNLEAADDIEIIQSGTTESNIPQYKQYKVQEVIRKTQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGLQNGISRKISNGEERKRLKDILNKI 238

Query: 240 E--VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                    VI+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VSGDKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++ Y +A  FM+ L+PS    ++++++  PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASRFMQDLLPSELAKLKEHKNKIPIFTKFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G IR+  + A+ ILR++E  + +     I V T+   VLYLLN KRA
Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVLYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK   ++   N  + V    Q  S D   E  
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKQNNNNVNPVKPVIQNHSADYTEEEP 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
             ++      K ++  +  +     +   +             A        V +   + 
Sbjct: 599 KTEQLRKNKHKWKTANNSNNVANEVKDKSLE-----------AAESVEHTVSVVEELKVV 647

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
                  +  + P  I      +        N      
Sbjct: 648 ESNAGLEEAQVAPKKIKRRYRNKKSNKTCPPNIAEDTE 685


>gi|157827600|ref|YP_001496664.1| ribonuclease E [Rickettsia bellii OSU 85-389]
 gi|157802904|gb|ABV79627.1| Ribonuclease E [Rickettsia bellii OSU 85-389]
          Length = 693

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 258/690 (37%), Positives = 394/690 (57%), Gaps = 5/690 (0%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  K+Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S++   +         +  + D+      T  +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPASEKNFPINAFPEIVPPNIILDDEDEVRAATSYDPLI 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
             E   +       E +     N +   ++E ++    E++P+   +QY +Q+VI+  QI
Sbjct: 121 DGEEIDLKAIEDLVESKFQSELNLEAADDIEIIQSDKEENIPQ--YKQYKVQDVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN +    ISRKI+N  +RK LK I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYVSLAGKYCVLMPNKAAQNGISRKISNGDERKRLKNILNKV 238

Query: 240 EVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                    VI+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VNGDKSPYSVIIRTAGRGCSTLDLKKDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+I+ G++ Y +A  FM+ L+PS    +++++   PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVIIYGQEAYEDAAKFMQDLLPSEMTKLKEHKSKTPIFTKFQVEEQLIK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSGRST E  IE+TAL+TNLEAA+EIARQ++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM+E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+R S L
Sbjct: 419 DLSGLIVVDFIDMDETKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRFSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G +R+  S A+ ILR++E  + +     I V  +   V+YLLN KR 
Sbjct: 479 ETNSSICSHCNGKGVVRADESNAMLILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQ 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK   ++   N  +      Q  S D   E  
Sbjct: 539 EIKFIEEKYNIRLNFYSDPNATSDSYSIEKVKLLKKNNNNLNAGKPVIQNHSADYTEEEP 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +       ++    I++ + +               V       
Sbjct: 599 KKEQLRKNKHKWKTGNNNNVVSEEKKKVPEIKEVKDQVVSVVKEEVEITDDGVVVEEKPL 658

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                      + +        E+     +
Sbjct: 659 PKKTKRRYRNKKSNKNRPVANKESSVAEDS 688


>gi|269958642|ref|YP_003328429.1| ribonuclease E [Anaplasma centrale str. Israel]
 gi|269848471|gb|ACZ49115.1| ribonuclease E [Anaplasma centrale str. Israel]
          Length = 620

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 226/615 (36%), Positives = 345/615 (56%), Gaps = 22/615 (3%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L+DA++V+E RV VL   +V E D E + +KQ++GNIY A V RVEPSLQA F++YG
Sbjct: 8   KRILVDAAYVDEIRVAVLDGGKVVEFDQELKDRKQLRGNIYYAVVKRVEPSLQAVFIEYG 67

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
            ++HGFLPF EI  ++YQ+P  +++ALL+         +   DD  H ++   +  +   
Sbjct: 68  ISKHGFLPFSEISVEHYQLPAEEKEALLQ---------DVYGDDQEHEELAGDDGVATPL 118

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
                  + +   +      +                      + Y IQ+VIK  Q L+V
Sbjct: 119 PDECGVDACKPSLDDRSGKRDPASK---------AGRSRASLHKLYKIQDVIKVDQKLMV 169

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNT-SKGETISRKITNPVDRKNLKEIARGLEV 241
           QI+KEERG+K A  +T+++LAGRY + MPN  SK   ISR+I +  DR+NLKE+   +++
Sbjct: 170 QIIKEERGSKCATFSTHVALAGRYCIFMPNAGSKSSGISRRIEDCDDRRNLKEVLNSIKL 229

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
           P   G+I+RTAG+++++ EI++D  YL   W  +R+   N   P L+Y E N++KRA+RD
Sbjct: 230 PKESGIIIRTAGSNKSQKEIEQDLSYLQSTWQEIRDNCENMEPPALLYVEANIVKRALRD 289

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
              +   E++V+G + +   K++ K  M      VR Y+   PIF    ++ Q+  L+  
Sbjct: 290 FCDETTHEVVVAGSRAFSLVKEYAK-SMFRNKLRVRMYKGSVPIFTHYRVDSQILELYSD 348

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           ++ LPS GY++I  TEALVSIDVNSG+ T E  IE+TA +TN+EA +EIARQ+ LR L+G
Sbjct: 349 KIFLPSGGYLVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLSG 408

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           LIV+DFIDM   +  R+VE +++E+ K D+A+VQ G IS FGL+E+SRQR++ S+L++ T
Sbjct: 409 LIVIDFIDMLRYRYCRAVESEVREAFKNDKAKVQFGYISAFGLMEISRQRVKQSILDTNT 468

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541
             C +C+G G +RS  SVA  ILRSV  +  +     I V    +V+ YL N KR  I  
Sbjct: 469 IQCAHCRGVGRVRSLESVAADILRSVRYFAHKNREKIISVSADHEVLTYLFNNKRKHIWA 528

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD- 600
            E  F V I   +        F I         ++       ++     +   E      
Sbjct: 529 IEGEFKVIIRFGVSGNPGAAGFNIHAEKGYSTALSEELMGPPEASPEVAENKAESTEITG 588

Query: 601 -EALLPIPKSESLED 614
            +       +E  + 
Sbjct: 589 VQPNTQAVPAEVEKP 603


>gi|157828220|ref|YP_001494462.1| ribonuclease E [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932923|ref|YP_001649712.1| ribonuclease E [Rickettsia rickettsii str. Iowa]
 gi|157800701|gb|ABV75954.1| ribonuclease E [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908010|gb|ABY72306.1| ribonuclease E [Rickettsia rickettsii str. Iowa]
          Length = 690

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 256/702 (36%), Positives = 390/702 (55%), Gaps = 16/702 (2%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S+R   +         +  V DD             
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAAIYDALVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E    S  N   ++  ++      +      +QY +QEVI+  QI
Sbjct: 121 SEEID--LKTIEDLVESKFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERG+K AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGSKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                     I+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE  +I++
Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDGIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++GY +A  FM+ L+PS    +++++   PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYEDASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL++IDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAQEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA
Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK    +   N  + V    Q  + D   E +
Sbjct: 539 EIKFIEEKYNIKLNFYSDPHATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNSDYTEEEL 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +  +     +   +  +                   V +   + 
Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSLEAEES-----------VEQTVSVVEEVKVV 647

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                  +    P         +        N        + 
Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTEKNAE 689


>gi|239947791|ref|ZP_04699544.1| ribonuclease, Rne/Rng family [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922067|gb|EER22091.1| ribonuclease, Rne/Rng family [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 690

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 260/699 (37%), Positives = 393/699 (56%), Gaps = 16/699 (2%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S+R   +   +     +  V DD         +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFSEIALSNITVEDDKEKPTAIYDSLVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E    S  N   ++  ++      +      +QY +QEVI+  QI
Sbjct: 121 SEEID--LKTIEDLVESKFHSELNLEAADDIEIIQSDTSESNILQYKQYKVQEVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                     I+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VSGDKNAYSIIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++ Y +A  FM+ L+PS    ++++++  PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELSKLKEHKNKTPIFTKFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA
Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK   ++   N  + V    Q  S D   E  
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNPVKPVIQNHSADYTEEEP 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +  +     +   +  K                   V +   + 
Sbjct: 599 KKEQLRKNKHKWKTANNSNNIANEVKDKSLEAKEP-----------VEQTVSVVEEVKVV 647

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                  +    P       L +        N       
Sbjct: 648 ESNAGLEEAQAAPKKTKRRYLNKKSNKKRPVNTAEDTEK 686


>gi|15892265|ref|NP_359979.1| ribonuclease E [Rickettsia conorii str. Malish 7]
 gi|15619404|gb|AAL02880.1| ribonuclease E [Rickettsia conorii str. Malish 7]
          Length = 690

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 256/702 (36%), Positives = 392/702 (55%), Gaps = 16/702 (2%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S+R   +         +  V D+         +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDNKEKPAAIYDSLVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E +  S  N   ++  ++      +      +QY +QEVI+  QI
Sbjct: 121 SEEID--LKTIEDLVESTFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                     I+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++GY +A  FM+ L+PS    +++++   PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYADASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL++IDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYIVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G IR+  + A+ ILR++E  + +     I V T+   VLYLLN KR 
Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVLYLLNNKRT 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK    +   N  + V    Q  + D   E +
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNADYTEEEL 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +  +     +   +  +                   V +   + 
Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSLEAEES-----------VEQTVSVVEEVQVV 647

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                  +    P         +        N        + 
Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTEKNAE 689


>gi|238650481|ref|YP_002916333.1| ribonuclease E [Rickettsia peacockii str. Rustic]
 gi|238624579|gb|ACR47285.1| ribonuclease E [Rickettsia peacockii str. Rustic]
          Length = 690

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 257/702 (36%), Positives = 392/702 (55%), Gaps = 16/702 (2%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S+R   +         +  V DD         +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAAIYDSLVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  E    S  N   ++  ++      +      +QY +QEVI+  QI
Sbjct: 121 SEEID--LKTIEDLVESRFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                     I+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++GY +A  FM+ L+PS    +++++   PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYEDASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL++IDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPVVTLPSGGYMVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA
Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK    +   N  + V    Q  + D   E +
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNADYTEEEL 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +  +     +   +  +                   V +   + 
Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSLEAEES-----------VEQTVSVVEEVKVV 647

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                  +    P         +        N        + 
Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTEKNAE 689


>gi|67459417|ref|YP_247041.1| ribonuclease E [Rickettsia felis URRWXCal2]
 gi|67004950|gb|AAY61876.1| Ribonuclease E [Rickettsia felis URRWXCal2]
          Length = 678

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 260/680 (38%), Positives = 393/680 (57%), Gaps = 6/680 (0%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +P S+R   +         +  V DD         +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFPEIALSNITVEDDKEKPAAIYDSLVD 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE   I   + E   ES   +  ++ +  +     S  +      +QY +Q+VI+  QI
Sbjct: 121 SEE---IDLKNIEDLVESKFQSELNLEAADDIEIIQSGVEQNVLQYKQYKVQDVIRKNQI 177

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN      ISRKI+N  +RK LK+I   +
Sbjct: 178 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 237

Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                     I+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 238 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 297

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++ Y +A  FM+ L+PS    ++++++  PIF +  +E QL  
Sbjct: 298 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELSKLKEHKNKTPIFTKFQVEEQLVK 357

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 358 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 417

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 418 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 477

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ + +C++C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA
Sbjct: 478 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 537

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK   ++   N  + V    Q  S D   E  
Sbjct: 538 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNPVKPVIQNHSADYTEEEP 597

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +  +     +   +  K    +               + +   Q
Sbjct: 598 KKEQLRKNKHKWKTANNSNNIANEVKDKSLEVKEPVEQTVSVVEEVKVVVSSNAGLEEAQ 657

Query: 658 NVIDDSFDMYMEPSDITNHN 677
            V   +   Y         +
Sbjct: 658 AVPKKTKRRYCNKKSNKETS 677


>gi|51473454|ref|YP_067211.1| ribonuclease E [Rickettsia typhi str. Wilmington]
 gi|51459766|gb|AAU03729.1| ribonuclease E [Rickettsia typhi str. Wilmington]
          Length = 683

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 260/699 (37%), Positives = 401/699 (57%), Gaps = 23/699 (3%)

Query: 1   MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  K++IDA+   ETRVV+L + N +E+++F++  ++Q KGNIYLAKVTR+EPSLQA F+
Sbjct: 1   MHKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           +YG ++ GFLPF EIHP+YY +  ++    +         +  + DD     V   +   
Sbjct: 61  EYGMDKSGFLPFSEIHPNYYNLSITESTFPVNAFPEIALANITIEDDQEKPPVIYDSLID 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            EE+       ++  +    S  N   ++  ++      ++     + Y +Q+VI+  Q+
Sbjct: 121 SEEID--LKTIEDLVDSKFQSEFNLESADDIEIIQSCTTELNIPQYKPYKVQDVIRKNQV 178

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN S    ISRKI+N  +RK LK+I   +
Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKSSQNGISRKISNGEERKRLKDILNKI 238

Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
                    VI+RTAG   + +++K+D+ YL RLW+ +R+  +   AP  ++EE ++I++
Sbjct: 239 VSIQKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFSAPCFIHEEDSIIRK 298

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            IRD+   ++ E+++ G++ Y +A  FM+ L+PS    ++++++  PIF +  +E QL  
Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELTKLKEHKNKTPIFTQFQVEEQLVK 358

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           L+Q  VTLPS GY++IN TEAL+SIDVNSG+ST E  IE+TAL+TNLEAA+E+A+Q++LR
Sbjct: 359 LYQPIVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL+GLIVVDFIDM E KN + +E+  KE L +DRAR+Q G IS FGLLE SRQR+RSS L
Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           E+ ++VC +C G G IR+  + A+ ILR++E  + +     I V T+   V+YLLN KRA
Sbjct: 479 ETNSEVCFHCNGKGVIRASDANAMLILRTIENEIFEERIDIINVFTNIVSVIYLLNNKRA 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            I   E ++ + +N           + IEK    +   N+ + V    Q  S D   E  
Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKQNNSVNTVKPVIQNHSADYTEEEP 598

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
            +++      K ++  +   N V ++S                        +V ++  I+
Sbjct: 599 KKEQLRKNKHKWKTANNNIVNAVKDQSV------------------EQTVNIVEEMKVIE 640

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           N      +  + P +       +N       +  V    
Sbjct: 641 NNGISLEETQVTPKNAKRKYRNKNLNKKRLADSIVDGEN 679


>gi|153870707|ref|ZP_02000051.1| ribonuclease, Rne/Rng family [Beggiatoa sp. PS]
 gi|152072828|gb|EDN69950.1| ribonuclease, Rne/Rng family [Beggiatoa sp. PS]
          Length = 598

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 237/630 (37%), Positives = 352/630 (55%), Gaps = 58/630 (9%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++LI+A+  EE RV ++   R+ + D E+  +KQIK NIY  K+TR+EPSL+AAFVD+G
Sbjct: 2   KRILINATQPEELRVALVDGQRLYDFDIETAGRKQIKSNIYKGKITRLEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
                                +DR   L   ++A++  +A    V   D           
Sbjct: 62  ---------------------ADRHGFLPLKDVARSYFQAQQQAVQQSDTLE-------- 92

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
                                      ++ +    E       ++  I++V+K  Q +++
Sbjct: 93  ---------------------------KEDESPVEESEEPGPPQRRGIKDVLKEGQDIII 125

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           QI KEERGNKGAA+TT++SLAGRY VLMPN  +   +SR+I      +  +E    L++P
Sbjct: 126 QIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEDRSEA-RETLSTLDIP 184

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            GMG+ILRTAG ++T  E++ D EYL++LW  +   A    AP L+Y+E N+I RAIRD 
Sbjct: 185 TGMGLILRTAGVNKTAEELQWDLEYLLQLWKAIESSAQQQPAPFLIYQESNIIIRAIRDY 244

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
             +DISEI++  ++ Y EA  FM+ +MP +   V+ Y+   P+F R  IE Q+++  Q E
Sbjct: 245 LREDISEILIDNQEIYDEAYAFMQQVMPQHINKVKLYQHKVPLFTRYQIESQIETAFQRE 304

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V LP  G ++++ TEAL+SID+NS R+T+   IE+TAL TNLEA +EIARQLRLRDL GL
Sbjct: 305 VKLPLGGAIVLDHTEALLSIDINSARATKGVDIEETALTTNLEAVDEIARQLRLRDLGGL 364

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           +V+DFIDM   KN R VE ++KE+LK DRARVQVG IS FGLLEMSRQR+R S+ ES+  
Sbjct: 365 VVIDFIDMLSHKNQREVESRIKEALKMDRARVQVGRISRFGLLEMSRQRLRPSLGESSQI 424

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
           VC  C G G +RS  S++LS+LR +EE  ++     II      V  YLLN+KR+ ++E 
Sbjct: 425 VCPRCSGQGSVRSVESLSLSLLRLMEEEAMKEKTGKIITQVPVQVAAYLLNEKRSAVLEI 484

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R  ++I ++    +    + +++        +   K        + +  +E       
Sbjct: 485 EERQQINIVLIPNPFMETPFYEMQRVREDDKRESASLKASYKFIKNTQEPVVENY-NTPP 543

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
            L IP   +++ +  N     ST  + ++ 
Sbjct: 544 QLEIPAEPAVKGVVHNTPPVLSTKPVERQP 573


>gi|57239278|ref|YP_180414.1| ribonuclease E [Ehrlichia ruminantium str. Welgevonden]
 gi|58579242|ref|YP_197454.1| ribonuclease E [Ehrlichia ruminantium str. Welgevonden]
 gi|57161357|emb|CAH58280.1| putative ribonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417868|emb|CAI27072.1| Ribonuclease E [Ehrlichia ruminantium str. Welgevonden]
          Length = 610

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 234/607 (38%), Positives = 344/607 (56%), Gaps = 19/607 (3%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ++LID  + +E RV VLRD +V E D ES+ KK +KGNIY A V R+EPSLQA F++Y
Sbjct: 6   NKRILIDGVYQDEIRVAVLRDGQVVEFDQESKSKKCLKGNIYCAVVKRIEPSLQAVFIEY 65

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G N+HGFLPF EI  +YY IP  +++AL +              D      T+       
Sbjct: 66  GINKHGFLPFSEISLEYYNIPEEEKEALYQTLYKDSDKDTDTKSDDEKSTDTMILSEDES 125

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
           E    +       ++     N +                   F + Y +Q+VIK  Q ++
Sbjct: 126 EGITESEEKLALLKKENSRNNYNKSK--------------LPFHKLYKVQDVIKLDQKIM 171

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240
           VQI+KEERGNKGA  +T+++L GRY + MPN+  K   ISR+I +P +RK LK     ++
Sbjct: 172 VQIIKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIDDPEERKILKNFLNSIK 231

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P   G+I+RTAG+++ + EI++D  YL  +W +++   ++   P L+Y E ++IKR +R
Sbjct: 232 LPKKSGLIIRTAGSNKARKEIEQDLSYLQSIWRSIQNSYISVTVPSLLYIEWDIIKRTLR 291

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   +   +I+VSG   Y  AK+ +K +  +  R+    +   PIF    IE Q+  L+ 
Sbjct: 292 DYCDESTQDIVVSGSHAYELAKECIKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYS 350

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY++I  TEALVSIDVNSG+ T E  IE+TA +TN+EA +EIARQ+ LR L+
Sbjct: 351 NIVNLPSGGYMVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 410

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM + +  RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ 
Sbjct: 411 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAQVQFGYISTFGLMEISRQRVKQSILEAN 470

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T  C++CKG G +RS  S +  ILR++     +     I V   + +V Y  N KR  I 
Sbjct: 471 TVPCSHCKGVGKVRSFESSSGDILRNIRYCANKNRNKLINVSVVAQMVEYFFNNKRQHIT 530

Query: 541 EYEARFGVSINVVIGIELAD-KLFYI--EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
           E EA F VSI + +   L     F I  E  + V    +  +    D +    +   E V
Sbjct: 531 EIEAEFSVSIKLTVSQNLNSVSDFSISVENDNIVNQSEDLVNVFTVDYKTSKSEDLKEEV 590

Query: 598 WQDEALL 604
            +  + +
Sbjct: 591 QKSTSSV 597


>gi|254995126|ref|ZP_05277316.1| ribonuclease E (rne) [Anaplasma marginale str. Mississippi]
          Length = 619

 Score =  390 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 230/608 (37%), Positives = 346/608 (56%), Gaps = 21/608 (3%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L+DA++V+E RV VL D +V E D E + +KQ++GN+Y A V R+EPSLQA F++YG
Sbjct: 8   KRILVDAAYVDEIRVAVLDDGKVVEFDQELKDRKQLRGNVYYAVVKRIEPSLQAVFIEYG 67

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
            ++HGFLPF EI  ++YQ+P  +++ALL+       + E +A+        +P+D  ++ 
Sbjct: 68  ISKHGFLPFSEISVEHYQLPTEEKEALLQSMYGDGQEHEGLAEG-DGAAAPLPDDGPVDT 126

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
             P  +      +                    S         + Y IQ+VIK  Q L+V
Sbjct: 127 CKPQLDDRSGKRD------------------ASSKARSKSSLHKLYKIQDVIKVDQKLMV 168

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLEV 241
           QI+KEERGNK A  +TY++L GRY + MPN   K   ISR+I +  DRKNLKE+   +++
Sbjct: 169 QIIKEERGNKCATFSTYIALVGRYCIFMPNAGNKNSGISRRIEDCDDRKNLKEVLNSIKL 228

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
           P   GVI+RTAG++R++ EI++D  YL   W  +R+       P L+Y E N+IKRA+RD
Sbjct: 229 PKESGVIIRTAGSNRSQKEIEQDLSYLQSTWQEIRDNCEKVEPPALLYVEANIIKRALRD 288

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
              + I +++VSG + +   K++ K  M      VR Y+   PIF    ++ Q+  L+  
Sbjct: 289 FCDETIHDVVVSGSRAFSLVKEYAK-SMFRNKLRVRMYKGSVPIFTHYRVDAQILELYSD 347

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           ++ LPS GY++I  TEALVSIDVNSG+ T E  IE+TA +TN+EA +EIARQ+ LR L+G
Sbjct: 348 KIFLPSGGYLVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLSG 407

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           LIV+DFIDM   +  R+VE +++E+ K D+A+VQ G IS FGL+E+SRQR++ S+L++ T
Sbjct: 408 LIVIDFIDMLRYRYCRAVEAEVREAFKNDKAKVQFGYISAFGLMEISRQRVKQSILDTNT 467

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541
             C +C+G G +RS  SVA  ILR V  +  +     I V     V+ YL N KR  I  
Sbjct: 468 VQCAHCRGVGRVRSFESVAADILRDVRYFAHKNREKIISVLADPGVLTYLFNHKRKHIWA 527

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            E  F V I + +        F I         ++       ++Q    +   +      
Sbjct: 528 IEGEFKVLIRLGVSENPGAAGFSIHAEKGYSTALSEELMGPPEAQPELAESKADSAEIAN 587

Query: 602 ALLPIPKS 609
               + ++
Sbjct: 588 VQETVQEA 595


>gi|58617295|ref|YP_196494.1| ribonuclease E [Ehrlichia ruminantium str. Gardel]
 gi|58416907|emb|CAI28020.1| Ribonuclease E [Ehrlichia ruminantium str. Gardel]
          Length = 610

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 232/607 (38%), Positives = 342/607 (56%), Gaps = 19/607 (3%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ++LID  + +E RV VLRD +V E D ES+ KK +KGNIY A V R+EPSLQA F++Y
Sbjct: 6   NKRILIDGVYQDEIRVAVLRDGQVVEFDQESKSKKCLKGNIYCAVVKRIEPSLQAVFIEY 65

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G N+HGFLPF EI  +YY IP  +++ L +              D      T+       
Sbjct: 66  GINKHGFLPFSEISLEYYNIPEEEKETLYQTLYKDSDKDTDTKSDDEKSTDTMILSEDES 125

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
           E    +       ++     N +                   F + Y +Q+VI+  Q ++
Sbjct: 126 EGIAESEEKLALLKKENSRNNYNKSK--------------LPFHKLYKVQDVIRLDQKIM 171

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240
           VQI+KEERGNKGA  +T+++L GRY + MPN+  K   ISR+I +P +RK LK     ++
Sbjct: 172 VQIIKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIDDPEERKILKNFLNSIK 231

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P   G+I+RTAG+++ + EI++D  YL  +W +++   ++   P L+Y E ++IKR +R
Sbjct: 232 LPKKSGLIIRTAGSNKARKEIEQDLSYLQSIWRSIQNSYISVTVPSLLYIEWDIIKRTLR 291

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   +   +I+VSG   Y  AK+ +K +  +  R+    +   PIF    IE Q+  L+ 
Sbjct: 292 DYCDESTQDIVVSGSHAYELAKECIKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYS 350

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY++I  TEALVSIDVNSG+ T E  IE+TA +TN+EA +EIARQ+ LR L+
Sbjct: 351 NIVNLPSGGYMVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 410

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM + +  RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ 
Sbjct: 411 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAQVQFGYISTFGLMEISRQRVKQSILEAN 470

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T  C++CKG G +RS  S +  ILR++     +     I V   + +V Y  N KR  I 
Sbjct: 471 TVPCSHCKGVGKVRSFESSSGDILRNIRYCANKNRNKLINVSVVAQMVEYFFNNKRQHIT 530

Query: 541 EYEARFGVSINVVIGIELAD-KLFYI--EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
           E EA F VSI + +   L     F I  E  + V    +  +    D +    +   E V
Sbjct: 531 EIEAEFSVSIKLTVSQNLNSISDFSISVENDNIVNQSEDLVNVFTVDYKTSKSEDLKEEV 590

Query: 598 WQDEALL 604
               + +
Sbjct: 591 QNSTSSV 597


>gi|56416944|ref|YP_154018.1| ribonuclease E [Anaplasma marginale str. St. Maries]
 gi|222475310|ref|YP_002563727.1| ribonuclease E (rne) [Anaplasma marginale str. Florida]
 gi|255003293|ref|ZP_05278257.1| ribonuclease E (rne) [Anaplasma marginale str. Puerto Rico]
 gi|255004418|ref|ZP_05279219.1| ribonuclease E (rne) [Anaplasma marginale str. Virginia]
 gi|56388176|gb|AAV86763.1| ribonuclease E [Anaplasma marginale str. St. Maries]
 gi|222419448|gb|ACM49471.1| ribonuclease E (rne) [Anaplasma marginale str. Florida]
          Length = 619

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 229/608 (37%), Positives = 346/608 (56%), Gaps = 21/608 (3%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L+DA++V+E RV VL D +V E D E + +KQ++GN+Y A V R+EPSLQA F++YG
Sbjct: 8   KRILVDAAYVDEIRVAVLDDGKVVEFDQELKDRKQLRGNVYYAVVKRIEPSLQAVFIEYG 67

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
            ++HGFLPF EI  ++YQ+P  +++ALL+       + E +A+        +P+D  ++ 
Sbjct: 68  ISKHGFLPFSEISVEHYQLPAEEKEALLQSMYGDGQEHEGLAEA-DGAAAPLPDDGPVDA 126

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
             P  +      +                    S         + Y IQ+VIK  Q L+V
Sbjct: 127 CKPQLDDRSGKRD------------------ASSKARSKSSLHKLYKIQDVIKVDQKLMV 168

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLEV 241
           QI+KEERGNK A  +TY++L GRY + MPN   K   ISR+I +  DRKNLKE+   +++
Sbjct: 169 QIIKEERGNKCATFSTYIALVGRYCIFMPNAGNKNSGISRRIEDCDDRKNLKEVLNSIKL 228

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
           P   GVI+RTAG++R++ EI++D  YL   W  +R+       P L+Y E N+IKRA+RD
Sbjct: 229 PKESGVIIRTAGSNRSQKEIEQDLSYLQSTWQEIRDNCEKVEPPALLYVEANIIKRALRD 288

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
              + I +++VSG + +   K++ K  M      VR Y+   PIF    ++ Q+  L+  
Sbjct: 289 FCDETIHDVVVSGSRAFSLVKEYAK-SMFRNKLRVRMYKGSVPIFTHYRVDAQILELYSD 347

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           ++ LPS GY++I  TEALVSIDVNSG+ T E  IE+TA +TN+EA +EIARQ+ LR L+G
Sbjct: 348 KIFLPSGGYLVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLSG 407

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           LIV+DFIDM   +  R+VE +++E+ K D+A+VQ G IS FGL+E+SRQR++ S+L++ T
Sbjct: 408 LIVIDFIDMLRYRYCRAVEAEVREAFKNDKAKVQFGYISAFGLMEISRQRVKQSILDTNT 467

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541
             C +C+G G +RS  SVA  +LR V  +  +     I V     V+ YL N KR  I  
Sbjct: 468 VQCAHCRGVGRVRSFESVAADMLRDVRCFAHKNREKIISVLADPGVLTYLFNHKRKHIWA 527

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            E  F V I + +        F I         ++       ++Q    +   +      
Sbjct: 528 IEGEFKVLIRLGVSENPGAAGFSIHAEKGYSTALSEELMGPPEAQPELAESKADNAEIAN 587

Query: 602 ALLPIPKS 609
               + ++
Sbjct: 588 VQETVQEA 595


>gi|88606792|ref|YP_504952.1| ribonuclease [Anaplasma phagocytophilum HZ]
 gi|88597855|gb|ABD43325.1| ribonuclease, Rne/Rng family [Anaplasma phagocytophilum HZ]
          Length = 636

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 235/621 (37%), Positives = 360/621 (57%), Gaps = 20/621 (3%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKG-NIYLAKVTRVEPSLQAAFVDY 61
            ++LIDA +++E RV VL + +V E D E + +KQ++G NIY A V R+EPSLQA F++Y
Sbjct: 11  KRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEY 70

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G  +HGFLPF EI  ++YQIP  ++  LLK             D+    + +   + + +
Sbjct: 71  GVGKHGFLPFSEIAVEHYQIPQEEKDVLLK---------NLYGDNSEQDEHSEEEECTGD 121

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
                 + S++ ++   ++          + K G  + VP K  +   +Q VIK  Q L+
Sbjct: 122 AEPSEESSSEDADKVQSLAEEQRAGKRCSEGKNGKGKLVPHKMYK---VQNVIKVDQKLM 178

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240
           VQI KEERG+K A  +TY+ LAGRY + MPN+  K   ISR+I + V RKNLKE    ++
Sbjct: 179 VQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNSGISRRIDDCVHRKNLKEFLDEMK 238

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P   GVI+RTAG++RT  E++RD  YL   WD V+    +   P L+Y E ++IKR +R
Sbjct: 239 LPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKSSFESVTHPSLLYVEADVIKRTLR 298

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   +++ +++V+G K +   K++ K +  +  R+    +   PIF    +  Q+  L+ 
Sbjct: 299 DFCDENVHDVVVAGSKAFGLVKEYAKSMFGNRLRVRTY-KGSIPIFTHYRVNAQILELYT 357

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ LPS GY++I  TEALVSIDVNSGR T E  IE+TA +TN+EA +EIARQ+ LR L+
Sbjct: 358 DKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIEETAYRTNMEAVKEIARQVNLRGLS 417

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM + +  R+VE +++E+ K D+A++Q G IS FGL+E+SRQR++ S+L+S+
Sbjct: 418 GLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQFGYISAFGLMEISRQRVKQSILDSS 477

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T  C +CKG G  RS  S++ SILR V     +     ++V   S VV +L N KR  I 
Sbjct: 478 TVQCHHCKGVGRTRSLESISASILRDVSYVANKNPEKILVVSVVSSVVSHLFNSKRRQIA 537

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           E E+ F V I + +   L    + I       +L++          A S  K      ++
Sbjct: 538 EIESEFKVLIRLDVDDNLGISDYNIRAEKGYSSLLHEELSSAVVVTADSVKK-----KEE 592

Query: 601 EALLPIPKSESLEDIQDNIVS 621
            A LP   ++  + + +N+  
Sbjct: 593 AAELPAEGTDHQKSLAENVAE 613


>gi|32475458|ref|NP_868452.1| ribonuclease E [Rhodopirellula baltica SH 1]
 gi|32446000|emb|CAD75816.1| ribonuclease E [Rhodopirellula baltica SH 1]
 gi|327538420|gb|EGF25092.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica WH47]
          Length = 534

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 200/576 (34%), Positives = 322/576 (55%), Gaps = 46/576 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLI+    EE+R+ V+ +NR+EEL  E +  +   GNIY  K+  +EPS+QAAFVD
Sbjct: 1   MKREMLINVLQPEESRIAVVENNRLEELYVERKSVENYSGNIYRGKIVNLEPSIQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G  R+GFL   +I P Y++    D + +++ES+     +                    
Sbjct: 61  FGVGRNGFLHISDIEPQYFRQGGYDPEEIMRESDEMAEAAA------------------- 101

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                      N E  +G +      + + +  IQE+ K    +
Sbjct: 102 -------------------------QRNRESGRGSTRVFKGGRPRNKPPIQEIFKRGDEV 136

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE  GNKG  ++TY+S+ GRY VLMP  S+   +SRKI +  DRK LK+    L 
Sbjct: 137 LVQVIKEGIGNKGPTLSTYISIPGRYLVLMPALSRVG-VSRKIEDEDDRKRLKKCLLSLS 195

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G+G I+RTAGA R++ E++RD +YL+RLW  +     N+  P  +YEE +LI R IR
Sbjct: 196 PPKGLGFIVRTAGAGRSEDELQRDMDYLLRLWKAIVRRVENTTEPGEIYEESDLIIRTIR 255

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y  DI  I++  ++ Y +A+DF+K++MP     ++ Y+ P P+F +  +E ++  ++Q
Sbjct: 256 DIYSDDIDHILIDQKESYEKARDFLKMVMPRVVDRLKYYDGPGPLFHKYNLEEEIVKINQ 315

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V LP  G ++I+ TEALV+IDVNSG        E+ A + N+ AA+EIARQLRLRDL 
Sbjct: 316 RQVALPDGGSIVIDPTEALVAIDVNSGNFRGNASAEENAFRLNIAAAKEIARQLRLRDLG 375

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV DFIDM ++   R VE+ L++++  DRAR ++   S FGL+EM+RQRIR S+  S 
Sbjct: 376 GVIVNDFIDMRKESYRRKVERVLRDAMANDRARTKILRTSPFGLIEMTRQRIRPSLKRSI 435

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            K C  C+G G +++  S+++ ++R +   +       + V  + +V  +L N+KR T+ 
Sbjct: 436 YKDCPCCEGRGLVKTPESMSIEVVRMLALAVKNKHIVRVTVRVNDEVSAFLNNKKRRTVS 495

Query: 541 EYEARFGVSINVVIGIELADKLFYIE-KGSPVQALV 575
           E E    +++ ++    L  +   ++ +    + + 
Sbjct: 496 EMEECGNMTVQILGSEGLFPEHLEVDCRDEHGERVE 531


>gi|262277367|ref|ZP_06055160.1| ribonuclease E [alpha proteobacterium HIMB114]
 gi|262224470|gb|EEY74929.1| ribonuclease E [alpha proteobacterium HIMB114]
          Length = 610

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 254/604 (42%), Positives = 368/604 (60%), Gaps = 16/604 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  K+LIDAS  ++TRV +  +  V+  +FE+ +KKQ+KGNIYL KV+R+EPSLQAAFVD
Sbjct: 1   MDKKILIDASQEKQTRVAITNNGNVDGYEFENINKKQLKGNIYLGKVSRIEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN--DH 118
           +G  RHGFL F +I  +YYQ+P SD+ AL +E    + +     +++           D 
Sbjct: 61  FGNERHGFLAFNDIQSEYYQLPQSDKDALKQEEEEIREELNKATENIEESQNEDQEALDE 120

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSN--VEDVKGGSPEDVPKKFKRQYCIQEVIKN 176
           + +         +      I    N    N   E+      E +  K K++Y IQEVIK 
Sbjct: 121 NAQVDLQSNTDEENQVSNEISEVENIENKNALNENQLDKKIEKIRSKRKKRYRIQEVIKP 180

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
            Q++L+QIVKEERG KGAA+TTY+SLAG+Y VLMPNT+KG  ISRKI N  DR++++EI 
Sbjct: 181 GQVILIQIVKEERGKKGAALTTYISLAGKYIVLMPNTAKGGGISRKIFNSQDRRHIREII 240

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
             LE+P  MG+I+RTAGA +T+ +IK D E L+ +WD ++   L S AP+L++EEG+LI 
Sbjct: 241 NSLEIPKSMGLIVRTAGAKKTQNDIKNDLEVLIGIWDKIKVKTLKSNAPNLIHEEGDLIY 300

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R+IRD    D  EII+ G+  Y +AK++  ++     + ++++++  P+F  +GIE  L+
Sbjct: 301 RSIRDFLTYDTEEIIIDGDDAYEKAKNYADIIAKDSLKKIKKHKNKIPLFHSTGIEKYLN 360

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
            ++ + VTL S GY+II+ TEALVS+DVNSG++T+E  IE TAL TN+EAAEE+ARQ +L
Sbjct: 361 KIYDSRVTLKSGGYLIISPTEALVSVDVNSGKATKERNIEKTALATNIEAAEEVARQAKL 420

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RDLAGLIV+DFIDME   N R VE+K+KESL+ D+AR QVG ISNFGLLEM+RQR+R S 
Sbjct: 421 RDLAGLIVIDFIDMENYSNRRLVERKMKESLRSDKARTQVGRISNFGLLEMTRQRLRESY 480

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQK 535
           ++  T           + S+ S    ILR VEE +        + V      +LY+    
Sbjct: 481 IKWET-----------VLSKESFCEKILRKVEEKIFDIPKVKKVEVELSPKTILYMKENM 529

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
              I  +E +F           L  + F +   +    +++T  ++    + P   K+ +
Sbjct: 530 NDEIDFFEKKFKFKTTFTKNENLLSREFKVNFLNNKNKILDTYSEISIKLEEPEVLKDNK 589

Query: 596 CVWQ 599
              +
Sbjct: 590 KNKK 593


>gi|148652236|ref|YP_001279329.1| ribonuclease [Psychrobacter sp. PRwf-1]
 gi|148571320|gb|ABQ93379.1| RNAse G [Psychrobacter sp. PRwf-1]
          Length = 613

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/612 (28%), Positives = 283/612 (46%), Gaps = 49/612 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ S   E+RV VL +  V E+  E  +K  + GNIYL  V RV P +QAAFV+
Sbjct: 1   MSEELLINVS-PMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVE 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQ--------------------------------- 87
            G +R  FL   ++       P +D+                                  
Sbjct: 60  IGQSRTAFLHVNDMRRIARPAPTADKAPEIRHNAKQEPTVLTSMPVDRCEHIAENVVTAS 119

Query: 88  -----ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETE--EESIIS 140
                 + +     + D  +   ++  G +        +E   + N   +    E     
Sbjct: 120 DTMASVIAETEPAMEADPLSAKTEIEAGSLREKKSALADESDNLKNDLLDNALLEIDSPD 179

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
              + ++  +       E    +  R   IQ  +   Q +LVQ+ K++ G KGA +TT +
Sbjct: 180 MVGNAITKADTKPAAVKERQIIEPPRHELIQYRLHEGQKILVQVTKDQLGTKGARLTTNI 239

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTK 258
           SL  RY V +P++     IS++I N  +R  LK     L        G+I RTA      
Sbjct: 240 SLPSRYLVYLPSSEHIG-ISQRIDNEEERHRLKTELGALMQTVNLTGGLIARTAAERVPV 298

Query: 259 IEIKRDFEYLMRLWDNVRELALNS----VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314
            +++ D  YL++LW  ++     S     +  L+Y+E +L  R+IRDL   D  ++IV  
Sbjct: 299 AKLEEDIYYLVQLWRTIQARKEASAGSGQSAVLIYQELSLPLRSIRDLVHPDTEKVIVDH 358

Query: 315 EKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIIN 374
           E  Y E + F K  +P     +  Y    P+F    +E  L    +  V L S GY+II+
Sbjct: 359 EGMYNEVRQFAKEFVPFIYPRILPYSGEQPLFDVHRVEEDLRDALKRRVDLKSGGYLIID 418

Query: 375 QTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434
           QTEA+ +IDVN+G       +EDT  +TNLEA   IARQLRLR+L G+I++DFIDM E++
Sbjct: 419 QTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLRLRNLGGIIILDFIDMLEQQ 478

Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494
           +   V + L+  L +D A+ ++  +S  GL+EM+R+R R S+ +   + C  C+G G+I+
Sbjct: 479 HKDDVLENLQYQLSQDYAKTKITQVSELGLVEMTRKRTRESLEQQLCEPCKTCEGKGFIK 538

Query: 495 SQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           +  +V   I R +      Y +     V  H+ V+  LL+ +  T+ + E   G  I   
Sbjct: 539 TAETVCFEIFREIMRCARTYNSPKKFTVVAHASVIDLLLSSEADTVADLEYLLGRVITFE 598

Query: 554 IGIELADKLFYI 565
           +      + + I
Sbjct: 599 VENLYTQEQYDI 610


>gi|68171666|ref|ZP_00545028.1| Ribonuclease E and G [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658461|ref|YP_507286.1| ribonuclease [Ehrlichia chaffeensis str. Arkansas]
 gi|67998913|gb|EAM85603.1| Ribonuclease E and G [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599918|gb|ABD45387.1| ribonuclease, Rne/Rng family [Ehrlichia chaffeensis str. Arkansas]
          Length = 606

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 232/605 (38%), Positives = 342/605 (56%), Gaps = 22/605 (3%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ++LIDA + +  RV VLRD +V E D ES++KK +KGN+Y A V R+EPSLQA F++Y
Sbjct: 5   NKRILIDAVYQDGIRVAVLRDGQVVEFDQESKNKKCLKGNVYCAVVKRIEPSLQAVFIEY 64

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G N+HGFLPF EI  DYY I   +++ L +            +D     DV   +D    
Sbjct: 65  GANKHGFLPFSEISLDYYNISEEEKEKLYQ-------VLYEDSDVKNDDDVKSVDDSVAC 117

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
           +     N S   ++ +++  +N                    F + Y +Q+VIK  Q L+
Sbjct: 118 DTKDQDNVSDCNDKLTLLKKDN-----------LRNGKSKLPFYKLYKVQDVIKLDQKLM 166

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240
            QIVKEERGNKGA  +T+++L GRY + MPN+  K   ISR+I +  DRK LK     ++
Sbjct: 167 AQIVKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIEDADDRKILKNFLSAIK 226

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P   G+I+RTAG+++ + EI++D  YL   W +++   ++   P L+Y EG++IKR +R
Sbjct: 227 LPKESGIIIRTAGSNKNQKEIEQDLSYLQSTWRSIQNSYISVTMPLLLYVEGDIIKRTLR 286

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   ++  +IIVSG   Y  AK+ +K +  +  R+    +   PIF    IE Q+  L+ 
Sbjct: 287 DYCDENTQDIIVSGSYAYELAKECVKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYG 345

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY++I  TEALVSID+NSG+ T E  IE+TA +TN+EA +EIARQ+ LR L+
Sbjct: 346 NVVNLPSGGYMVITPTEALVSIDINSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 405

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM + +  RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ 
Sbjct: 406 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAKVQFGYISTFGLMEISRQRVKQSILEAN 465

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T  C++CKG G +RS  S +  ILR +     +     I +     +V Y  N KR  I 
Sbjct: 466 TVQCSHCKGVGRVRSLESSSGDILRDIRYCANKNRNKLINISVAGQMVEYFFNNKRQHIA 525

Query: 541 EYEARFGVSINVVIGIELAD-KLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
           E E  F VS+ + +    +    F I  +   +         V +     S D  ++   
Sbjct: 526 EIEEEFSVSVKLTVNQNTSSVSDFNISVENDDMLNQGKDAVNVFTVDYKISEDNKLKEEI 585

Query: 599 QDEAL 603
           Q    
Sbjct: 586 QKTPT 590


>gi|73667172|ref|YP_303188.1| ribonuclease E [Ehrlichia canis str. Jake]
 gi|72394313|gb|AAZ68590.1| RNAse E [Ehrlichia canis str. Jake]
          Length = 608

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/604 (37%), Positives = 336/604 (55%), Gaps = 19/604 (3%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ++LIDA + +  RV VLRD +V E D ES+ KK +KGN+Y A V R+EPSLQA F++Y
Sbjct: 5   NKRILIDAVYQDGIRVAVLRDGQVVEFDQESKDKKCLKGNVYCAVVKRIEPSLQAVFIEY 64

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G N+HGFLPF EI  DYY I   +++ L +                   + +   +    
Sbjct: 65  GANKHGFLPFSEISLDYYNISEEEKEKLYQILY----------------EDSDIKNDDDV 108

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
           +    +      +++ +   N  +    +D   GS       F + Y +Q+VIK  Q L+
Sbjct: 109 KSVDDSVVCDNKDQDDVNDYNEKLTLLKKDNSKGSYNKSKLPFYKLYKVQDVIKLEQKLM 168

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240
            QI+KEERGNKGA  +T+++L GRY + MPN+  K   ISR+I +  DRK LK     ++
Sbjct: 169 AQIIKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIEDADDRKTLKNFLNVIK 228

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P   G+I+RTAG+++++ EI++D  YL   W +++   ++   P L+Y EG++IKR +R
Sbjct: 229 LPKESGMIIRTAGSNKSQKEIEQDLSYLQSTWRSIQNSYVSITVPSLLYVEGDIIKRTLR 288

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   ++  +IIVSG   Y  AK+ +K +  +  R+    +   PIF    IE Q+  L+ 
Sbjct: 289 DYCDENTQDIIVSGSYAYELAKECVKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYG 347

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY++I  TEALVSIDVNSG+ T E  IE+TA +TN+EA +EIARQ+ LR L+
Sbjct: 348 NIVNLPSGGYMVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 407

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDM + +  RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ 
Sbjct: 408 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAKVQFGYISTFGLMEISRQRVKQSILEAN 467

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T  C++C G G +RS  S +  ILR +     +     I +     ++ Y  N KR  I 
Sbjct: 468 TVQCSHCNGVGRVRSLESSSGDILRDIRYCANKNRNKLINISVAGQMIEYFFNNKRQHIA 527

Query: 541 EYEARFGVSINVVIG-IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
           E E  F VS+ + +         F I   +   +  N              + N      
Sbjct: 528 EIEEEFSVSVKLTVNQNTSNISDFNINVENDDISNQNKDVVNIFTVDYKISEDNKLKEEM 587

Query: 600 DEAL 603
            +  
Sbjct: 588 QDTS 591


>gi|325110583|ref|YP_004271651.1| RNAse E [Planctomyces brasiliensis DSM 5305]
 gi|324970851|gb|ADY61629.1| RNAse E [Planctomyces brasiliensis DSM 5305]
          Length = 534

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/565 (33%), Positives = 303/565 (53%), Gaps = 50/565 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +ML++    EE+R+ ++ D  +EEL  E   ++   GNIY  ++  +EPS+QAAFVD
Sbjct: 1   MKREMLVNVYQPEESRIAIVEDGVLEELYVERNSQESFVGNIYKGRIVNIEPSIQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G   +GFL   ++  +Y++                                        
Sbjct: 61  FGVGSNGFLHVSDVESEYFK---------------------------------------- 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                         +     + +   S+    +        +    +  IQ++ K    +
Sbjct: 81  ---------HLPPVDPDKRGSRDKSRSSSRGGRPPRRPVNERSVAAKPSIQDIFKRGDEV 131

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++K+  G KG  ++TY+S+ GRY VLMP   +   ISRKI N  DRK+L+E+ + L 
Sbjct: 132 LVQVIKDGIGTKGPTLSTYISIPGRYLVLMPALQRVG-ISRKIENVDDRKHLREVIKQLS 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G+G I+RTAG  R++ +++RD  YL+RLW  +        AP  VY+E ++I R IR
Sbjct: 191 PPPGLGFIVRTAGVDRSEKDLRRDMNYLLRLWKVIVRRIDKHPAPVDVYQESDMITRTIR 250

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y  DI  +++  E  Y+ A++FMK+++P +   V+ Y+   PIF +  +E ++  +  
Sbjct: 251 DIYAADIDTVLIDDEDQYKHAREFMKVVLPKHVDRVKYYDGAEPIFHKYNVEQEITKIQN 310

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L   G ++I+QTEALV+IDVNSG    +   E+T+ Q N+ AA+EI+RQ+RLRDL 
Sbjct: 311 RTVQLEGGGSIVIDQTEALVAIDVNSGTHRVDDDAEETSFQVNMRAAKEISRQIRLRDLG 370

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV DFIDM ++K+ R+VE++L +++++DRAR +V  IS FGL+EM+RQRIR S+  S 
Sbjct: 371 GVIVNDFIDMRQEKHRRAVERQLHDAVQRDRARTKVLRISPFGLIEMTRQRIRPSLKRSI 430

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C G+G ++   SVA+ ++R +           + +  H  V  YL N+KR  ++
Sbjct: 431 YEECPCCNGSGSVKKVESVAIEVMRELMRVCSNNKVRKVALELHHRVATYLANKKRKELI 490

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E R  V I      ++      +
Sbjct: 491 ELEERSNVVITFDSRYDVNPNHMEL 515


>gi|94266078|ref|ZP_01289796.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
 gi|93453361|gb|EAT03792.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
          Length = 513

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/566 (28%), Positives = 276/566 (48%), Gaps = 59/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+A+   E R+ +L    + E   E   +K + GNIY  KV RV P +QAAF+D
Sbjct: 1   MSTELLINAT-PYEIRIALLEHGNLAEFHLEHPTEKGLVGNIYKGKVVRVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R GFL                                                   
Sbjct: 60  VGLERTGFLYV------------------------------------------------- 70

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                +   S E E+     A  +  S     +G        +      I +++   Q +
Sbjct: 71  ---DDVLVTSHEVEKRLDRCAKGEGSSPCCGDEGEML----LRRVPGQNIDDLLSEGQEI 123

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KE  G+KGA +T +++L  R  V MP T     ISRKI +   R+ L++    L 
Sbjct: 124 LVQVCKEPLGSKGARLTCHITLPCRNLVFMPMTEHIG-ISRKIEDEDVRRMLRQDIESLR 182

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RT     +  E++ D E+L+  W  +++ A  +  P LVYE+ ++  R +R
Sbjct: 183 PS-GTGFIVRTVAELASNEELEADMEFLLHTWSEIQDRAAGAPVPSLVYEDLDITLRVVR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++  ++ E++V     Y    +F++   P     V       PIF   GI+ +++   +
Sbjct: 242 DVFSPEVDEVVVDEPATYERVLEFVETFAPHLKGRVCLASGEPPIFESFGIDFEVNRALE 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L   GY++I  TEAL  IDVN+GR   ++ +E+T  +TN+EAA+EIA QLRLR++ 
Sbjct: 302 RKIWLRCGGYIVIEPTEALTVIDVNTGRYVGKNGLEETIFKTNMEAAKEIAYQLRLRNIG 361

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDME++++  ++   LKE+ KKD++R+ +  +S FGL++M+R+R R  +    
Sbjct: 362 GIIIVDFIDMEDEEHREAIFNTLKEAAKKDKSRLNILRVSEFGLVQMTRKRNREDLEHLL 421

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C+G G +RS  + +  I R++E    +     + V  H  V   +L ++  TI 
Sbjct: 422 CEPCATCQGTGVLRSGRTTSYEIFRTIEREACKKEGPTVTVRVHPRVAELMLREEARTID 481

Query: 541 EYEARFGVSINVVIGIELADKLFYIE 566
             E + G  I+V+   +   + +++E
Sbjct: 482 YLEKQCGKRIHVMPLKDYHPERYHLE 507


>gi|71065057|ref|YP_263784.1| RNAse G [Psychrobacter arcticus 273-4]
 gi|71038042|gb|AAZ18350.1| RNAse G [Psychrobacter arcticus 273-4]
          Length = 528

 Score =  377 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/571 (28%), Positives = 260/571 (45%), Gaps = 52/571 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ S   E+RV VL +  + E+  E  HK  + GNIYL  V RV P +QAAFVD
Sbjct: 1   MSEELLINIS-PMESRVAVLDNGILGEIYIERHHKLGLVGNIYLGTVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G +R  FL   ++                +E       S+    D     +    D   
Sbjct: 60  IGQSRTAFLHVNDMQ---------------REPRPVAKSSKIEKTDDERTIIEATADDLA 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                ++  S E                                  +  IQ  +   Q +
Sbjct: 105 VTPPVVSTQSTEAV-----------------------------LISKTLIQHRLHESQRI 135

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ K++ G+KGA +TT +SL  RY V +P++       R        + LK     L 
Sbjct: 136 LVQVTKDQLGSKGARLTTNISLPSRYLVYLPSSDHIGISQRIDGEDERTR-LKTELNSLM 194

Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---LVYEEGNLI 295
                  G+I RTA       +++ D  YL++LW  +              L+Y+E +L 
Sbjct: 195 QTVNLKGGLIARTAAERVPVDKLEEDIYYLLQLWRTICARHQEMKQHQSSELIYQELSLP 254

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            R+IRDL   D  ++I+   + Y + + F K  +P     +  Y     +F    +E  L
Sbjct: 255 LRSIRDLVHADTEKVIIDNAQIYEQVRYFAKEFVPFVYDRIVHYTAEQSLFDVHRVEDDL 314

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
               +  V L S GY+II+QTEA+ +IDVN+G       +EDT  +TNLEA   IARQLR
Sbjct: 315 RDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLR 374

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+L G+I++DFIDM E+++   + + L+  L +D A+ ++  +S  GL+EM+R+R R S
Sbjct: 375 LRNLGGIIILDFIDMLEQQHKDDILESLQSQLVQDYAKTKITQVSELGLVEMTRKRTRES 434

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQ 534
           + +   + C+ C+G G++++  +V   I R +      Y +     V  H+ V+  LL  
Sbjct: 435 LGQQLCEPCSTCQGRGFVKTAETVCFEIFREIMRCARTYNSPKKFTVVAHAAVIDLLLTS 494

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +  T+ + E   G  I   +      + + I
Sbjct: 495 ESDTVADLEYLLGRVITFDVENLYTQEQYDI 525


>gi|297569133|ref|YP_003690477.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
 gi|296925048|gb|ADH85858.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
          Length = 511

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/564 (28%), Positives = 281/564 (49%), Gaps = 57/564 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+A+   E R+ +L    + E   E   +K + GN+Y  +V RV P +QAAFVD
Sbjct: 1   MSTQLLINAT-PYEIRIALLEHGNLAEFYLEHPAEKGLVGNVYRGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R GFL                                                   
Sbjct: 60  VGLERTGFLYV------------------------------------------------- 70

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                    +    E+ +   +    +  +   G   + + ++   Q  I++++   Q +
Sbjct: 71  ----DDVLVTSNEVEKRLARCDRGDGTGHDTCCGHDTDPLCRRHPGQ-NIEDLLSEGQDI 125

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ KE  G+KGA +T +++L  R  V MP T     ISRKI +   R+ L++    L 
Sbjct: 126 MVQVCKEPLGSKGARLTCHITLPCRNLVFMPRTEHIG-ISRKIEDEDVRQMLRQDIEALR 184

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RT   + T  +++ D E+L+  W+ ++  A  +  P L+Y++ ++  R +R
Sbjct: 185 PA-GAGFIVRTVAETATNEDLEADMEFLLHTWEEIQARATTAPVPGLIYQDLDITLRVVR 243

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++  ++ +++V   + Y+    F++  +P     V    +  PIF   G+E++++   +
Sbjct: 244 DVFSPEVDQVVVDEPETYQRVLQFVETFVPHLKGRVELAPEDPPIFDAYGVELEVNRALE 303

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L   GY+II  TEAL  IDVN+GR   ++ +E+T  +TN+EAA+EIA QLRLR++ 
Sbjct: 304 RKIWLRCGGYIIIEPTEALTVIDVNTGRYVGKNGLEETIFKTNMEAAKEIAYQLRLRNIG 363

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDME++++  +V   LKE+ KKD++R+ +  +S FGL++M+R+R R  +    
Sbjct: 364 GIIIVDFIDMEDEEHREAVFNALKEAAKKDKSRLNILRVSEFGLVQMTRKRNREDLEHLM 423

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C+G G IRS  S+   + R +E    +  A  ++V  H  V   LL ++  T+ 
Sbjct: 424 CEPCNCCQGTGVIRSSRSLCYDVFRQIEREACRRQAETVVVRVHPRVAELLLREEAHTVD 483

Query: 541 EYEARFGVSINVVIGIELADKLFY 564
             E + G  I ++   +   + + 
Sbjct: 484 YLEKKCGKRIQIMPIKDFHPEKYE 507


>gi|283780210|ref|YP_003370965.1| ribonuclease, Rne/Rng family [Pirellula staleyi DSM 6068]
 gi|283438663|gb|ADB17105.1| ribonuclease, Rne/Rng family [Pirellula staleyi DSM 6068]
          Length = 543

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/579 (32%), Positives = 306/579 (52%), Gaps = 42/579 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++MLI+ S  EE R+ ++ D  +EEL  E   +    GNIY  ++  +EPS+QAAFVD
Sbjct: 7   MKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVD 66

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G  R+GFL   ++ P Y++    D                                   
Sbjct: 67  FGVGRNGFLHISDVEPQYFRQGGYD---------------------------------PA 93

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E++        +T E+                +         + + +  IQE+ +    +
Sbjct: 94  EQIGGGRLADIDTGEDDDAP--------RPQQRRERRPPRGGRPRVKPPIQEIFRRGDEV 145

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE  G KG  ++TY+S+ GRY VLMP   +   +SRKI +   R+ L++    L 
Sbjct: 146 LVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRVG-VSRKIEDDELRRTLRDTLLELN 204

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G+G I+RTAG  RTK E+ RD  YL+RLW  +      +  P  +YEE ++I R IR
Sbjct: 205 PPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKKTAGPATIYEESDMIIRTIR 264

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++  +I  I +   + +  AK+F++L+MP     + QYE   P+F +  +E ++  ++Q
Sbjct: 265 DIFTAEIDAIYIDHPEAFERAKEFLQLVMPRNVNRLHQYEGREPLFHKYKVEQEIVQIYQ 324

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L   G ++I+QTEALV+IDVNSG    E   ++TA Q N+ AA+EIARQLRLRDL 
Sbjct: 325 RKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAYQLNISAAKEIARQLRLRDLG 384

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV DFIDM ++++ R VE+ L++++++DRAR ++   S FGL+EM+RQRIR S+  S 
Sbjct: 385 GVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTSPFGLIEMTRQRIRPSLKRSV 444

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C G G +++  S+A+ ++R +     Q     + V  +S+V  YL N+KR  I+
Sbjct: 445 YGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVTVRVNSEVASYLNNKKRREIM 504

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           + E    + + ++       +   +E        +N   
Sbjct: 505 KLEDDAQMVVQILSHEGAFPEHLQVECRDNEGRELNLPA 543


>gi|77920177|ref|YP_357992.1| RNase EG [Pelobacter carbinolicus DSM 2380]
 gi|77546260|gb|ABA89822.1| RNAse G [Pelobacter carbinolicus DSM 2380]
          Length = 503

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 286/565 (50%), Gaps = 65/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   ++I+ +   ETRV +L +  + EL  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1   MTKDLVINTT-SHETRVALLENGHIAELYIERTRERGIVGNIYKGKVLRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL              +D    ++         E   D+  + +     +   
Sbjct: 60  IGLEKAAFLY------------VADVLDQMQA-------LERFIDEGENENGLPDEEGRD 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
               P                                            I++++K  Q +
Sbjct: 101 SAALP-------------------------------------------PIEDLLKEGQEV 117

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KE  G KGA +T ++SL GR+ V MP       ISR+I N  +++ L+E+   + 
Sbjct: 118 LVQVSKEPIGTKGARITAHISLPGRHLVYMPTVDHVG-ISRRIENEEEKERLRELIEEMR 176

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G G I+RTA   ++  +++ D E+L  LW+ +  L  +  AP L+Y + ++  + +R
Sbjct: 177 SP-GSGFIVRTAAEGKSAEDMRSDMEFLAGLWNGICSLRDHKGAPCLIYSDLDVTSKVLR 235

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +D+  I+V   + Y +   F++  MP    ++  YE   P+F   G+EV++D    
Sbjct: 236 DILTEDVRRIVVDSSREYDKIVRFIETFMPKLTYVIELYEGDEPVFDAFGLEVEIDRALG 295

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +ID+N+GR   +H +EDT L+TNLEA +E+A QLRLR++ 
Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDINTGRFVGKHNLEDTILKTNLEAVKEVAYQLRLRNIG 355

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLI++DFIDME++ +   V   L+E+LK DRA+  +  IS  GL+EM+R+R+R ++  + 
Sbjct: 356 GLIIIDFIDMEKEAHREKVYVALEEALKGDRAKTNILKISELGLVEMTRKRVRENLTRTL 415

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+S++   I R +   +       + +  H  +   + +++R  I 
Sbjct: 416 CEPCPYCEGKGYVKSRSTMVYEIFRELRREIRNLAGAQVTLLVHPSIASVICDEERWEID 475

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           + E  +G  I +    +   + F I
Sbjct: 476 DLEQAYGKQIAITARFDFHQEQFEI 500


>gi|330814310|ref|YP_004358549.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487405|gb|AEA81810.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 641

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 253/614 (41%), Positives = 365/614 (59%), Gaps = 18/614 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LIDAS  ++TRV +  DN VEE ++E+E KKQ+KGNI+L +++R+EPSLQAAFVD
Sbjct: 1   MEKEILIDASQEKQTRVAIKSDNGVEEYEYENEQKKQLKGNIFLGRISRIEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G  RHGFL F +I   YYQIP +D++ +LKE    + + E   ++++  D    N+   
Sbjct: 61  FGNERHGFLAFNDIQTQYYQIPLADKELILKEEEELRKELEEETNELSPEDSNSSNESES 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVS------NVEDVKGGSPEDVPKKFKRQYCIQEVI 174
           ++    +  S   E+        D              +    +   KK  ++Y IQEVI
Sbjct: 121 DDSEDNSIESTPDEDLKNSEDREDSSEIESPELEKNSYEKKISDIRAKKKFKRYRIQEVI 180

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K  QI+L+QIVKEERG KGAA+TT+LSLAG+Y VLMPNT+KG  ISRKI N  DRKN++ 
Sbjct: 181 KPGQIILLQIVKEERGKKGAALTTFLSLAGKYIVLMPNTAKGGGISRKIFNSQDRKNIRG 240

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           I + L +P  MG+I+RTAGA +T+ EIK D + L+++W+ ++E  L S AP +++EEG++
Sbjct: 241 IIKELTIPETMGLIVRTAGAKKTQNEIKNDLDVLVQIWEEIKEKTLTSNAPTMIHEEGDV 300

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I R IRD +  DI E+ V G KG+ +AK + +++     + +++Y+   P+F    IE  
Sbjct: 301 IYRTIRDFFSNDIKEVTVDGAKGFDKAKKYAEIIAKDQVKKIKKYKGKIPLFHSKEIEKY 360

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           L+ + +  + L S GY+IIN TEALV+ID+NSGRST+E  IE TAL TN+EAA EIARQ 
Sbjct: 361 LNQIFEPRINLKSGGYLIINPTEALVAIDINSGRSTKERNIEKTALNTNIEAAVEIARQA 420

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           +LRDLAGLIV+DFIDME   N R VEKKLKE+L+ D+ARVQVG ISNFGLLEM+RQR+R 
Sbjct: 421 KLRDLAGLIVIDFIDMENYSNRRLVEKKLKEALRNDKARVQVGKISNFGLLEMTRQRLRE 480

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLN 533
           S ++  T           I S  S +  IL+ +EE +        + V     ++ ++  
Sbjct: 481 SSIQWKT-----------ILSVESFSQKILKLIEEKIFSIPKVKTVDVDLPKKIIDFIQA 529

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
             +  I  +E +F   I      +   + F I      +  +         +    ++K 
Sbjct: 530 NMKDEIDFFEKKFKFKIKFNANPDFLSEDFKISFKDSKKKELEELKNEEEVAIEEPFNKE 589

Query: 594 IECVWQDEALLPIP 607
                        P
Sbjct: 590 KAFHKDTSDSDDKP 603


>gi|326565674|gb|EGE15837.1| ribonuclease G [Moraxella catarrhalis 12P80B1]
          Length = 542

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/573 (31%), Positives = 274/573 (47%), Gaps = 42/573 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+R+ VL D    E+  E   K  + GNIYL  V RV P +QAAFVD
Sbjct: 1   MSEELLINYT-PMESRMAVLTDGVTSEILIERHQKLGLVGNIYLGTVARVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   ++                K    + +  EA    +T   +   ++ S 
Sbjct: 60  IGQARTAFLHANDMQ---------------KPKRSSDSLDEAPPAPITQLHIAHQSNASQ 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +E A    +S   + +           N E                   IQ  ++    +
Sbjct: 105 DERAEQNGYSSAIDIQRPALPKKPESPNAE------------------LIQYRLREGDKI 146

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VK+E G KGA +TT +SL  RY V +P   +   +S +I    +R  LKEI   L 
Sbjct: 147 LVQVVKDELGTKGARLTTNISLPSRYLVYLPTNDEYVGVSIRIEETEERTRLKEILTQLM 206

Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGN 293
             A    G+I RTA    ++ ++K D  YL++LW  +          ++    L+Y+E +
Sbjct: 207 QNANLKGGLIARTAAEEMSESKLKEDIYYLLQLWQTIIARQAAIRLHSNKRSELIYQELS 266

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  R IRDL  +  +++++  E  Y E   F +  +P  A +V  Y    P+F    +E 
Sbjct: 267 LPLRCIRDLVNEKTTKVLIDNEMMYHEVAHFAQEFVPFIAPMVTHYAGETPLFDLYRVEE 326

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            L +  +  V L S GY+II+QTEA+ +IDVN+G      C+EDT  +TNLEA   IARQ
Sbjct: 327 DLQNALKRRVELKSGGYLIIDQTEAMTTIDVNTGSYVGARCLEDTVYKTNLEATHAIARQ 386

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR+L G+I++DFIDM E+ +   V   L+E L  D A+  +  +S  GL+EM+R+R R
Sbjct: 387 IRLRNLGGIIILDFIDMSEEVHRADVLASLQEQLTHDYAKTNITQVSELGLVEMTRKRTR 446

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLL 532
            S+ +   + C  C G GYI++  +V   I R +  Y           V  HS V+  +L
Sbjct: 447 ESLPQQLCEPCPVCDGKGYIKTAETVCFEIFREIMRYGRTFNKPKQFTVIAHSSVIDMML 506

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + +  T+ + E   G  I   I      + + I
Sbjct: 507 SSEAGTVADLEYLIGKPIRFEIENFFTPEQYNI 539


>gi|326566243|gb|EGE16395.1| ribonuclease G [Moraxella catarrhalis 103P14B1]
 gi|326567105|gb|EGE17227.1| ribonuclease G [Moraxella catarrhalis BC1]
 gi|326572270|gb|EGE22265.1| ribonuclease G [Moraxella catarrhalis BC8]
 gi|326574612|gb|EGE24552.1| ribonuclease G [Moraxella catarrhalis O35E]
 gi|326574868|gb|EGE24798.1| ribonuclease G [Moraxella catarrhalis 101P30B1]
          Length = 542

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/573 (30%), Positives = 274/573 (47%), Gaps = 42/573 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+R+ VL D    E+  E   K  + GNIYL  V RV P +QAAFVD
Sbjct: 1   MSEELLINYT-PMESRMAVLTDGVTSEILIERHQKLGLVGNIYLGTVARVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   ++                K    + +  EA    +T   +   ++ S 
Sbjct: 60  IGQARTAFLHANDMQ---------------KPKRSSDSLDEAPPAPITQLRIAHQSNASQ 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +E A    +S   + +           N E                   IQ  ++    +
Sbjct: 105 DERAEQNGYSSAIDIQRPALPKKPESPNAE------------------LIQYRLREGDKI 146

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VK+E G KGA +TT +SL  RY V +P   +   +S +I    +R  LK+I   L 
Sbjct: 147 LVQVVKDELGTKGARLTTNISLPSRYLVYLPTNDEYVGVSIRIEETEERTRLKDILTQLM 206

Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGN 293
             A    G+I RTA    ++ ++K D  YL++LW  +          ++    L+Y+E +
Sbjct: 207 QNANLKGGLIARTAAEEMSESKLKEDIYYLLQLWQTIIARQAATRLHSNKRSELIYQELS 266

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  R IRDL  +  +++++  E  Y E   F +  +P  A +V  Y    P+F    +E 
Sbjct: 267 LPLRCIRDLVNEKTTKVLIDNEMMYHEVAHFAQEFVPFIAPMVTHYAGETPLFDLYRVEE 326

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            L +  +  V L S GY+II+QTEA+ +IDVN+G      C+EDT  +TNLEA   IARQ
Sbjct: 327 DLQNALKRRVELKSGGYLIIDQTEAMTTIDVNTGSYVGARCLEDTVYKTNLEATHAIARQ 386

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR+L G+I++DFIDM E+ +   V   L+E L  D A+  +  +S  GL+EM+R+R R
Sbjct: 387 IRLRNLGGIIILDFIDMSEEVHRADVLASLQEQLTHDYAKTNITQVSELGLVEMTRKRTR 446

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLL 532
            S+ +   + C  C G GYI++  +V   I R +  Y           V  HS V+  +L
Sbjct: 447 ESLPQQLCEPCPVCDGKGYIKTAETVCFEIFREIMRYGRTFNKPKQFTVIAHSSVIDMML 506

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + +  T+ + E   G  I   I      + + I
Sbjct: 507 SSEAGTVADLEYLIGKPIRFEIENFFTPEQYNI 539


>gi|296113799|ref|YP_003627737.1| ribonuclease G [Moraxella catarrhalis RH4]
 gi|295921493|gb|ADG61844.1| ribonuclease G [Moraxella catarrhalis RH4]
 gi|326562144|gb|EGE12472.1| ribonuclease G [Moraxella catarrhalis 7169]
 gi|326564491|gb|EGE14717.1| ribonuclease G [Moraxella catarrhalis 46P47B1]
 gi|326568369|gb|EGE18449.1| ribonuclease G [Moraxella catarrhalis BC7]
 gi|326576192|gb|EGE26107.1| ribonuclease G [Moraxella catarrhalis CO72]
          Length = 542

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/573 (31%), Positives = 274/573 (47%), Gaps = 42/573 (7%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+R+ VL D    E+  E   K  + GNIYL  V RV P +QAAFVD
Sbjct: 1   MSEELLINYT-PMESRMAVLTDGVTSEILIERHQKLGLVGNIYLGTVARVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   ++                K    + +  EA    +T   +   ++ S 
Sbjct: 60  IGQARTAFLHANDMQ---------------KPKRSSDSLDEAPPAPITQLRIAHQSNASQ 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +E A    +S   + +           N E                   IQ  ++    +
Sbjct: 105 DERAEQNGYSSAIDIQRPALPKKPESPNAE------------------LIQYRLREGDKI 146

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VK+E G KGA +TT +SL  RY V +P   +   +S +I    +R  LKEI   L 
Sbjct: 147 LVQVVKDELGTKGARLTTNISLPSRYLVYLPTNDEYVGVSIRIEETEERTRLKEILTQLM 206

Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGN 293
             A    G+I RTA    ++ ++K D  YL++LW  +          ++    L+Y+E +
Sbjct: 207 QNANLKGGLIARTAAEEMSESKLKEDIYYLLQLWQTIIARQAATRLHSNKRSELIYQELS 266

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  R IRDL  +  +++++  E  Y E   F +  +P  A +V  Y    P+F    +E 
Sbjct: 267 LPLRCIRDLVNEKTTKVLIDNEMMYHEVAHFAQEFVPFIAPMVTHYAGETPLFDLYRVEE 326

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            L +  +  V L S GY+II+QTEA+ +IDVN+G      C+EDT  +TNLEA   IARQ
Sbjct: 327 DLQNALKRRVELKSGGYLIIDQTEAMTTIDVNTGSYVGARCLEDTVYKTNLEATHAIARQ 386

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR+L G+I++DFIDM E+ +   V   L+E L  D A+  +  +S  GL+EM+R+R R
Sbjct: 387 IRLRNLGGIIILDFIDMSEEVHRADVLASLQEQLTHDYAKTNITQVSELGLVEMTRKRTR 446

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLL 532
            S+ +   + C  C G GYI++  +V   I R +  Y           V  HS V+  +L
Sbjct: 447 ESLPQQLCEPCPVCDGKGYIKTAETVCFEIFREIMRYGRTFNKPKQFTVIAHSSVIDMML 506

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + +  T+ + E   G  I   I      + + I
Sbjct: 507 SSEAGTVADLEYLIGKPIRFEIENFFTPEQYNI 539


>gi|93005312|ref|YP_579749.1| ribonuclease [Psychrobacter cryohalolentis K5]
 gi|92392990|gb|ABE74265.1| RNAse G [Psychrobacter cryohalolentis K5]
          Length = 528

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/571 (28%), Positives = 261/571 (45%), Gaps = 52/571 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ S   E+RV VL +  + E+  E  HK  + GNIYL  V RV P +QAAFVD
Sbjct: 1   MSEELLINIS-PMESRVAVLDNGILGEIYIERHHKLGLVGNIYLGTVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G +R  FL   ++                +E   A   S+    D     + +  D   
Sbjct: 60  IGQSRTAFLHVNDMQ---------------REPRPAAKSSKVEKTDDERTIIEVTADDLA 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                I+  + E                                  +  IQ  +   Q +
Sbjct: 105 ITPPVISTQNTEVV-----------------------------PVSKTLIQHRLHESQRI 135

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ K++ G+KGA +TT +SL  RY V +P++       R        + LK     L 
Sbjct: 136 LVQVTKDQLGSKGARLTTNISLPSRYLVYLPSSEHIGISQRIDGEEERTR-LKTELTSLM 194

Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---LVYEEGNLI 295
                  G+I RTA       +++ D  YL++LW  +              L+Y+E +L 
Sbjct: 195 QTVNLKGGLIARTAAERVPVDKLEEDIYYLLQLWRTICARRQEMKPNQSSELIYQELSLP 254

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            R+IRDL      ++++   + Y + + F K  +P     +  Y     +F    +E  L
Sbjct: 255 LRSIRDLVHAGTEKVVIDNAQIYEQVRYFAKEFVPFVYDRIVHYTAEQSLFDVHRVEDDL 314

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
               +  V L S GY+II+QTEA+ +IDVN+G       +EDT  +TNLEA   IARQLR
Sbjct: 315 RDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLR 374

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+L G+I++DFIDM E+++   + + L+  L +D A+ ++  +S  GL+EM+R+R R S
Sbjct: 375 LRNLGGIIILDFIDMLEQQHKDDILESLQSQLVQDYAKTKITQVSELGLVEMTRKRTRES 434

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQ 534
           + +   + C+ C+G G++++  +V   I R +      Y +     V  H+ V+  LL  
Sbjct: 435 LGQQLCEPCSTCQGRGFVKTAETVCFEIFREIMRCARTYNSPKKFTVVAHAAVIDLLLTS 494

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +  T+ + E   G  I   +      + + I
Sbjct: 495 ESDTVADLEYLLGRVITFDVENLYTQEQYDI 525


>gi|301058191|ref|ZP_07199241.1| putative Ribonuclease G [delta proteobacterium NaphS2]
 gi|300447693|gb|EFK11408.1| putative Ribonuclease G [delta proteobacterium NaphS2]
          Length = 510

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/567 (30%), Positives = 295/567 (52%), Gaps = 59/567 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+N+++I+ S   ETRV ++ +  V EL  E +  K++ GNIY  +V RV P +QAAFVD
Sbjct: 1   MSNELIIN-SRSYETRVALVENGVVVELHVERDSGKELMGNIYRGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +++ D+     SD + ++                              
Sbjct: 60  IGLGRTAFLYVSDVYRDF-----SDFERIM------------------------------ 84

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                N   V++  D          + ++  + I++++   Q +
Sbjct: 85  --------------------LNASEVNDTLDADKIDESLKRQSYQGSFQIEDLLHEGQSI 124

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ KE  GNKGA +T+++SL GR+ VLMP  +    +SRKI +  +R+ LK I + + 
Sbjct: 125 MVQVSKEPLGNKGARLTSHVSLPGRHLVLMPTVNHIG-VSRKIEDKEERERLKGIVKEIN 183

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G I+RT   +  K +++ + ++L++LW N+R+       P  +Y++  +  RA+R
Sbjct: 184 PG-SFGFIVRTVAENTGKEKLEAEMDFLLKLWANIRDKMEKGHNPGPLYKDLAVTLRAVR 242

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ +++  +IV  ++ Y +   F++   P     V  YE   PIF   GIE+++     
Sbjct: 243 DLFTREVDRLIVDSDEEYEKIMAFIETFAPRLKYSVELYEGAGPIFDAFGIEIEISRALG 302

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L S GY++I  TEAL SIDVN+G    +  +E+T L+TNLEA +EIA QLR R++ 
Sbjct: 303 NKIWLKSGGYIVIELTEALTSIDVNTGSYVGKRNLEETILKTNLEAVKEIAYQLRFRNIG 362

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDME+  N   V   LKE+L KD+A+  +  +S+ GL+EM+R+R R+S+    
Sbjct: 363 GLIVIDFIDMEKISNRERVSMALKEALSKDKAKTNILPMSDLGLIEMTRKRTRASLNRLL 422

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRATI 539
           ++ C YC G G ++S  ++   I R +E   +      +I +  + +V   L  +++ ++
Sbjct: 423 SEPCAYCDGRGTLKSPKTICYEIFRDLERDYMHPEEGGSIHILVNPEVGKILREEEQGSV 482

Query: 540 VEYEARFGVSINVVIGIELADKLFYIE 566
           ++ E R G  I ++       + + IE
Sbjct: 483 IDLEKRAGKRIIIIGKEHFHQEQYSIE 509


>gi|296120629|ref|YP_003628407.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776]
 gi|296012969|gb|ADG66208.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776]
          Length = 537

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 186/562 (33%), Positives = 303/562 (53%), Gaps = 50/562 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +ML++    EE+R+ +L D  +EEL  E    +   GNIY  ++  +EPS+QAAFVD
Sbjct: 1   MRKEMLMNVLQPEESRIAILEDGVLEELYVERNSLENYVGNIYKGRIVNIEPSIQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G  R+GFL   ++   YY+                                        
Sbjct: 61  FGVGRNGFLHVSDVEYQYYKHLV------------------------------------- 83

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                          +     ++D        +  +P  + +  + +  IQE+ +    +
Sbjct: 84  ------------DGPDESFDDDDDEEDEKPRGRPRAPRGLDRTSRGKPPIQEIFRRGSEV 131

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L+Q++KE  GNKG  ++TY+S+ GRY VLMP   +   +SRKI +   R+ L++  + L 
Sbjct: 132 LIQVIKEGIGNKGPTLSTYISIPGRYLVLMPGLQRVG-VSRKIGDDSIRRRLRQQLKELS 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G+G I+RTAG  R++ +++RD  YL+RLW+ + +      AP  +YEE +++ R IR
Sbjct: 191 PPEGLGFIIRTAGIDRSQKDLQRDMNYLLRLWNVIVKRIRKFPAPVDIYEESDMMIRTIR 250

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y  +I  I +   + Y  AK+FMK+++P     V+ Y+   P+F + G+E ++  + +
Sbjct: 251 DIYNSEIENIWIDEPRAYERAKEFMKIVLPRAVDRVQLYDGKEPLFHKHGVEEEIARIQR 310

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L   G ++I+QTEALV+IDVNSG   ++   E+ A Q NL AAEEIARQ+RLRDL 
Sbjct: 311 RHVPLKGGGSIVIDQTEALVAIDVNSGSFRQDENAEENAYQMNLRAAEEIARQIRLRDLG 370

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV DFIDM E+++ R VE+ L +++ +DRAR ++   S FGL+EM+RQRIR S+  S 
Sbjct: 371 GVIVNDFIDMREERHRRGVERALADAVARDRARTKILRTSPFGLVEMTRQRIRPSLRRSV 430

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C G G +++  S+A+ ++R +  +        I+V     V  YL N+KR  I 
Sbjct: 431 YEDCPCCAGTGQVKTAESMAIEVMRLLMFHANHQEVTRIVVDVQERVGAYLNNKKRREIS 490

Query: 541 EYEARFGVSINVVIGIELADKL 562
           + E ++ V+I++     +  + 
Sbjct: 491 QLEEQYEVAISINSLSNVTPEH 512


>gi|58584753|ref|YP_198326.1| ribonuclease G and E [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419069|gb|AAW71084.1| Ribonucleases G and E [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 590

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 214/596 (35%), Positives = 330/596 (55%), Gaps = 34/596 (5%)

Query: 5   MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +LI ++   +E RV +  DNRV E + E + KKQ++GNIY+A V RVEPSLQA F++YG 
Sbjct: 9   LLIENSICSDEVRVALSADNRVVEFEQEFKEKKQLRGNIYIACVKRVEPSLQAVFIEYGK 68

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           N+ GFL F EI PDY+ IP  +++   +                                
Sbjct: 69  NKQGFLSFSEISPDYFNIPEKEKETFFE-------------------------------- 96

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             + +   E    +  + ++D ++N    + G+         ++Y +Q+VI   Q LLVQ
Sbjct: 97  GCLNDDCTEENGNASANISSDSLTNKNVNESGNGFVREVSLYKRYKLQDVISVNQRLLVQ 156

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KEERGNKGA+ TTY++L GRY V MPN+     +SR+I +   RK LK+I   +++P 
Sbjct: 157 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDVNVRKQLKDILSSMDLPK 216

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
             G+I+RT G+ ++K EI++D+ YL  LW N+++ A +   P L+Y E +LI R+IRD  
Sbjct: 217 RSGLIIRTIGSGKSKKEIEQDYNYLSSLWQNIQKNASSINVPSLIYNEADLIMRSIRDFC 276

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             +  E+IVSG++ +   + + +  +       R Y    PIF   G+E Q+  L+   V
Sbjct: 277 S-NGMEVIVSGKEAFETVRQYARNALKGSKLRYRLYRGFIPIFTYYGVEDQISELYSNRV 335

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            LPS G +II  TEA VSIDVNSG+ T E  IE+TA +TN+EA  EI+RQ+ LR L+GLI
Sbjct: 336 KLPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 395

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           VVDFIDM   +  R+VE  ++++ K D+ARVQ   I++FGL+  SRQRI+ S+ E  T  
Sbjct: 396 VVDFIDMLRYQYCRAVESAIRQAFKDDKARVQFSYINDFGLMVFSRQRIKPSIQEINTTE 455

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +CKG G ++S   +  SILR ++    +    +  +  H  ++ ++ N KR T+   E
Sbjct: 456 CLHCKGIGKVKSNEVIVASILRDLQHIASRNRNRSFDLVAHGAIIAHIFNNKRGTVSTIE 515

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
             F + +NV     L+   F +++G  V        +        S ++  +   +
Sbjct: 516 KEFNIKLNVSADSSLSVDTFVLKRGDEVNLSDCKPLQNSGYKIESSSNERADNSEK 571


>gi|58698814|ref|ZP_00373692.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534672|gb|EAL58793.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 590

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 211/594 (35%), Positives = 329/594 (55%), Gaps = 34/594 (5%)

Query: 5   MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +LI +++   E RV +  +N+V E + E + KKQ++GNIY+A + R+EPSLQA F++YG 
Sbjct: 9   LLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           N+ GFL F EI  DY+ IP  +++ + +                                
Sbjct: 69  NKQGFLSFSEISLDYFNIPEKEKETIFESY------------------------------ 98

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
               +   E   ++I + ++D  ++    + GS         ++Y +Q+VI   Q +LVQ
Sbjct: 99  --SNDDYTEKGNDTIANVSSDSAASKNVNESGSGFVREVPLYKKYKLQDVISVNQKVLVQ 156

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KEERGNKGA+ TTY++L GRY V MPN+     +SR+I +   RK LKEI   + +P 
Sbjct: 157 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKEILSSINLPK 216

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
             G+I+RT G+ + K EI++D+ YL  LW ++++ A +   P L+Y E ++I R++RD  
Sbjct: 217 RSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNVPSLIYNEADVIMRSVRDFC 276

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             D  E+IVSG++ +   + +    +       R Y    PIF   GIE Q+  L+   V
Sbjct: 277 S-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRLYRGYAPIFTYYGIEDQISELYSNRV 335

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            LPS G +II  TEA VSIDVNSG+ T E  IE+TA +TN+EA  EI+RQ+ LR L+GLI
Sbjct: 336 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 395

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           VVDFIDM + +  R+VE  +K++ K D+A+VQ   I++FGL+  SRQRI+ ++ E  T  
Sbjct: 396 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 455

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +CKG G ++S   +  SILR ++    +    +  +  HS V+ ++ N KR T+   E
Sbjct: 456 CLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 515

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
             F +++NV I   L    F +++G  V        +        S ++  +  
Sbjct: 516 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQIGDSSNEEADNS 569


>gi|257454045|ref|ZP_05619319.1| ribonuclease G [Enhydrobacter aerosaccus SK60]
 gi|257448523|gb|EEV23492.1| ribonuclease G [Enhydrobacter aerosaccus SK60]
          Length = 521

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 166/571 (29%), Positives = 258/571 (45%), Gaps = 59/571 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LI+ S   E+RV VL D  + E+  E   K    GNIYL  V RV P +QAAF+D
Sbjct: 1   MTEELLINIS-PSESRVAVLEDGILNEIFIERHSKLGSVGNIYLGTVVRVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G +R  FL   ++                                        P   ++
Sbjct: 60  IGQSRTAFLHVNDMQ------------------------------------TLRPKLSAI 83

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E   P       T +    +      +                      I+  +   Q +
Sbjct: 84  ELPKPQNPAIDNTLDPDTTTLAMTTTTYQPPPSEL--------------IENRLYEGQRI 129

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++K++ G+KGA +TT +SL  RY V +P         R   +  +R+ LK     L 
Sbjct: 130 LVQVIKDQLGSKGARLTTDVSLPSRYLVYLPYGEHIGISQRI--DGDERERLKTQLGELM 187

Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---LVYEEGNLI 295
                  G+I RTA  +  + +++ D  YL++LW  V+     +       L+Y++ +L 
Sbjct: 188 HQVNLQGGLIARTAAENIPQSKLEEDIYYLLQLWRMVQARREQTPTHRRFELIYQDLSLP 247

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            RAIRDL  +    + V   + +   + F K  +P     ++ YE    +F    +E  L
Sbjct: 248 LRAIRDLIGEQTERVTVDNARVFDAIRHFAKEFVPLIYPRIQLYEGEQALFDVHRVEEDL 307

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
                  V L S GY+II+QTEA+ +IDVN+G       +EDT  +TNLEA   IARQLR
Sbjct: 308 KDALNRRVNLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLR 367

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+L G+I++DFIDM+E+++   V   L+E LK+D A+  +  +S  GL+EM+R+R R S
Sbjct: 368 LRNLGGIIILDFIDMQEQQHRDDVLASLQEQLKRDYAKTNISEVSALGLIEMTRKRTRES 427

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQ 534
           + +   + C  C G G+++S  +V L I R +      Y A     V  +S V+  L   
Sbjct: 428 LQQQLCEPCPTCGGKGFVKSAETVCLEIFRELMRCARTYNAPKKFTVVANSGVIDLLETI 487

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +  T+ E E   G  IN+        + + I
Sbjct: 488 EADTVAEMEYLLGRPINLESDNRFNQEQYDI 518


>gi|225630610|ref|YP_002727401.1| Ribonuclease, Rne/Rng family protein [Wolbachia sp. wRi]
 gi|225592591|gb|ACN95610.1| Ribonuclease, Rne/Rng family protein [Wolbachia sp. wRi]
          Length = 590

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 211/594 (35%), Positives = 329/594 (55%), Gaps = 34/594 (5%)

Query: 5   MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +LI +++   E RV +  +N+V E + E + KKQ++GNIY+A + R+EPSLQA F++YG 
Sbjct: 9   LLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           N+ GFL F EI  DY+ IP  +++ + +                                
Sbjct: 69  NKQGFLSFSEISLDYFNIPEKEKETIFESY------------------------------ 98

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
               +   E   ++I + ++D  ++    + GS         ++Y +Q+VI   Q +LVQ
Sbjct: 99  --SNDDYTEKGNDTIANVSSDSAASKNVNESGSGFVREVPLYKKYKLQDVISVNQKVLVQ 156

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KEERGNKGA+ TTY++L GRY V MPN+     +SR+I +   RK LKEI   + +P 
Sbjct: 157 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKEILSSINLPK 216

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
             G+I+RT G+ + K EI++D+ YL  LW ++++ A +   P L+Y E ++I R++RD  
Sbjct: 217 RSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNVPSLIYNEADVIMRSVRDFC 276

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             D  E+IVSG++ +   + +    +       R Y    PIF   GIE Q+  L+   V
Sbjct: 277 S-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRLYRGYAPIFTYYGIEDQISELYSNRV 335

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            LPS G +II  TEA VSIDVNSG+ T E  IE+TA +TN+EA  EI+RQ+ LR L+GLI
Sbjct: 336 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 395

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           VVDFIDM + +  R+VE  +K++ K D+A+VQ   I++FGL+  SRQRI+ ++ E  T  
Sbjct: 396 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 455

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +CKG G ++S   +  SILR ++    +    +  +  HS V+ ++ N KR T+   E
Sbjct: 456 CLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 515

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
             F +++NV I   L    F +++G  V        +        S ++  +  
Sbjct: 516 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQVGDSSNEEADNS 569


>gi|42520751|ref|NP_966666.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410491|gb|AAS14600.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 587

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 211/594 (35%), Positives = 327/594 (55%), Gaps = 37/594 (6%)

Query: 5   MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +LI ++    E RV +  +N+V E + E + KKQ++GNIY+A + R+EPSLQA F++YG 
Sbjct: 9   LLIENSICSNEVRVALSINNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           N+ GFL F EI  DY+ IP  +++ + +                                
Sbjct: 69  NKQGFLSFSEISLDYFNIPEKEKETIFE-------------------------------- 96

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                 + +  EE+  + ++D  ++      GS         ++Y +Q+VI   Q +LVQ
Sbjct: 97  ---GYSNDDCIEEASANVSSDSAASKNVNGSGSGFVREVPLYKKYKLQDVISVNQKVLVQ 153

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KEERGNKGA+ TTY++L GRY V MPN+     +SR+I +   RK LKEI   + +P 
Sbjct: 154 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKEILSSINLPK 213

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
             G+I+RT G+ + K EI++D+ YL  LW ++++ A +   P L+Y E ++I R++RD  
Sbjct: 214 RSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNVPSLIYNEADVIMRSVRDFC 273

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             D  E+IVSG++ +   + +    +       R Y    PIF   GIE Q+  L+   V
Sbjct: 274 S-DGIEVIVSGKEAFEAVRQYANNALKGSKLCYRLYRGYAPIFTYYGIEDQISELYSNRV 332

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            LPS G +II  TEA VSIDVNSG+ T E  IE+TA +TN+EA  EI+RQ+ LR L+GLI
Sbjct: 333 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 392

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           VVDFIDM + +  R+VE  +K++ K D+A+VQ   I++FGL+  SRQRI+ ++ E  T  
Sbjct: 393 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 452

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +CKG G ++S   +  SILR ++    +    +  +  HS V+ ++ N KR T+   E
Sbjct: 453 CLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 512

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
             F +++NV I   L    F +++G  V        +        S ++  +  
Sbjct: 513 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQIGDSSNEEADNS 566


>gi|116749044|ref|YP_845731.1| ribonuclease [Syntrophobacter fumaroxidans MPOB]
 gi|116698108|gb|ABK17296.1| RNAse G [Syntrophobacter fumaroxidans MPOB]
          Length = 530

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 172/573 (30%), Positives = 294/573 (51%), Gaps = 49/573 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +++I+ S   ETRV ++ + +V EL  E    + I GNIY  +V +V P +QAAFVD
Sbjct: 1   MSAELIINGS-AFETRVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               +  FL   +IH      P  D + LL  +   + D E V      G     +   L
Sbjct: 60  IDLEKAAFLYVSDIH-----HPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDL 114

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                                    +++     I+E ++  Q +
Sbjct: 115 -----------------------------------------QRYYSSVPIEERLQEGQEI 133

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KE  G+KGA +TT+++L GR+ V MP       +SR+I N V+RK L+EI   ++
Sbjct: 134 LVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHVG-VSRRIENEVERKRLREIMCEIK 192

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G I+RTA       +++ + ++L+++W N++    ++  P LVY+E ++  RA+R
Sbjct: 193 PSH-CGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSLVYQELDITLRAVR 251

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ K++  +++     +++  +F++  +P+    +  YE   PIF   GIE+++     
Sbjct: 252 DLFTKEVDRLVIDSRSEHKKITNFIETFLPALQSSIELYEGDEPIFDAYGIEMEVQRALS 311

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L S GY++I  TEAL ++DVN+GR   +  +E+T L+TNLEA +EIA QLRLR++ 
Sbjct: 312 KKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLEAVKEIAYQLRLRNIG 371

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   LK+++ KD+++  +  +S  GL+EM+R+R R S+ +  
Sbjct: 372 GIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLIEMTRKRTRESIGQVL 431

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+ +V   ILR +E         NI+V  H +V     ++ R  + 
Sbjct: 432 CEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHPEVAARFCDEDRGPLE 491

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
             E      I V        + + I      + 
Sbjct: 492 RVEETLHARIMVKGDPGFHLEQYEIAPLESEKR 524


>gi|206890648|ref|YP_002248021.1| ribonuclease G [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742586|gb|ACI21643.1| ribonuclease G [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 514

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 177/568 (31%), Positives = 296/568 (52%), Gaps = 56/568 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+N++LI+ +  +E RV +L   +V E   E +      GNIY  KV +V   +QA FVD
Sbjct: 1   MSNELLINVTR-QECRVALLEGGQVVEFYIERKGDSSYVGNIYKGKVVKVLKGMQACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I           +  + +     + D E                   
Sbjct: 60  IGLDKAAFLYVDDI-----------KGGIKELYPFLEGDEET------------------ 90

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                  +++   E++      +  K   +   I+E+++  Q +
Sbjct: 91  -----------------------EIIPKFEELSKSRKPEEIKLDFKDISIEELVQEGQEI 127

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ K+  G KGA VT+ ++L GRY VLMP       +SRKI +   RK LKE+A  ++
Sbjct: 128 LVQVAKDPMGTKGARVTSRITLPGRYVVLMPGMEHIG-VSRKIEDEEKRKELKELAAKIK 186

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G G+I+RT     T+ EI++D ++L  LWDN+++    + AP L++ E +L+ R++R
Sbjct: 187 PP-GFGLIMRTVSEDATEEEIQKDIDFLFLLWDNIQKKKDKTHAPSLIHSEFDLVLRSLR 245

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   +++  +I+     ++  K+F ++  P  A  +  YE   PIF   GIEV LD   +
Sbjct: 246 DFMSQNVDRMIIDSYIEWQRLKEFAQVYFPRIADKIELYEGEEPIFDAFGIEVDLDRALE 305

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+QTEA+  IDVN+G+   +  +EDT L+TNLEA +EIA Q+RLR+L 
Sbjct: 306 RKVWLKSGGYIVIDQTEAMTVIDVNTGKFVGKENLEDTILRTNLEAVKEIAYQIRLRNLG 365

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME+++N + +   + E +KKDRA+  +  I+  G+++M+R+R R S+    
Sbjct: 366 GIILIDFIDMEKEENKQKIINAMTEVMKKDRAKTTIYNITELGIVQMTRKRTRESLEHIL 425

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C YC+G G ++S  SVA  ILR + +++       + V  +  V   L +++R +I 
Sbjct: 426 CDSCPYCEGKGRVKSIRSVAYEILRKL-KFMTVPQGAELTVVANPSVADLLTDEERDSIE 484

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG 568
           E E    + I +     L  + + + K 
Sbjct: 485 EIENIKKIRITIKKDSMLHQENYSLHKN 512


>gi|332977664|gb|EGK14432.1| ribonuclease G [Psychrobacter sp. 1501(2011)]
          Length = 629

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 184/628 (29%), Positives = 284/628 (45%), Gaps = 65/628 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ S   E+RV VL +  V E+  E  +K  + GNIYL  V RV P +QAAFV+
Sbjct: 1   MSEELLINVS-PMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVE 59

Query: 61  YGGNRHGFLPF----------------LEIHPDYYQIPFS------DRQALLKESNIAQT 98
            G +R  FL                   E      Q P        DR A L E+    T
Sbjct: 60  IGQSRTAFLHVNDMRRLPRPTAVEEKSSEPRHHTKQEPRVLTSMPVDRSAHLAENKGQGT 119

Query: 99  DSEAV----------------------ADDVTHGDVTIPNDHSLEEVAPIANFSQETE-- 134
           D                            DV    +        +E A + N   +    
Sbjct: 120 DDVESIVYDSGASIMPHSADSAMSGMAKVDVEPTGLREKQSALADESANLQNDLIDNGLS 179

Query: 135 ----------EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
                     E        + ++  +       E    +  R   IQ  +   Q +LVQ+
Sbjct: 180 DSSVVDKASFETDSPDKVGNAITQADTKPAPIKERQIIEPPRHELIQYRLHEGQKILVQV 239

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
            K++ G KGA +TT +SL  RY V +P++     IS++I N  +R  LK     L     
Sbjct: 240 TKDQLGTKGARLTTNISLPSRYLVYLPSSEHIG-ISQRIDNEEERLRLKTELAQLMQTVN 298

Query: 245 --MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS----VAPHLVYEEGNLIKRA 298
              G+I RTA       +++ D  YL++LW  ++     S     +  L+Y+E +L  R+
Sbjct: 299 LTGGLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKEASAGSGQSAVLIYQELSLPLRS 358

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           IRDL   D  ++IV  E  Y E + F K  +P     +  Y    P+F    +E  L   
Sbjct: 359 IRDLVHPDTEKVIVDHEGMYNEVRQFAKEFVPFIYSRILPYMGEQPLFDVHRVEEDLRDA 418

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
            +  V L S GY+II+QTEA+ +IDVN+G       +EDT  +TNLEA   IARQLRLR+
Sbjct: 419 LKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLRLRN 478

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           L G+I++DFIDM E+++   V + L++ L +D A+ ++  +S  GL+EM+R+R R S+ +
Sbjct: 479 LGGIIILDFIDMLEQEHKDDVLQSLQQQLSQDYAKTKITQVSELGLVEMTRKRTRESLEQ 538

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRA 537
              + C  C+G G+I++  +V   I R +      Y +     V  H+ V+  LL+ +  
Sbjct: 539 QLCEPCKTCEGKGFIKTAETVCFEIFREIMRCARTYNSPKKFTVVAHASVIDLLLSSEAD 598

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYI 565
           T+ + E   G  I   +      + + I
Sbjct: 599 TVADLEYLLGRVITFEVENLYTQEQYDI 626


>gi|190570603|ref|YP_001974961.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019145|ref|ZP_03334952.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190356875|emb|CAQ54249.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995254|gb|EEB55895.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 582

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 213/591 (36%), Positives = 320/591 (54%), Gaps = 39/591 (6%)

Query: 5   MLIDASHV-EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +LI+++    E RV +L + RV E + E + KKQ++GNIY+A V R+EP+LQA F++YG 
Sbjct: 9   LLIESTTCSNEVRVALLVNGRVVEFEQEFKEKKQLRGNIYVAYVKRIEPALQAVFIEYGK 68

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           N+ GFL F EI  +Y+ IP              + + E   D+     V   ND+  EE 
Sbjct: 69  NKQGFLSFSEISLNYFNIP--------------EKEKEIFPDEDYSSGVDCSNDNCTEEG 114

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                 +                      +  S         R+Y +Q+VI   Q LLVQ
Sbjct: 115 LDSTASN----------------------ESSSGFVRGVPLHRKYKLQDVISVNQKLLVQ 152

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KEERGNKGA+ TTY++L GRY V MPN+     +SR+I +   RK LK+I   + +P 
Sbjct: 153 LTKEERGNKGASFTTYVTLVGRYCVFMPNSISRGGVSRRIEDTNVRKQLKDILNSINLPK 212

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           G G+I+RT GA ++K EI++D+  L  LW N+++   +   P L+Y E +++ R++RD  
Sbjct: 213 GSGLIVRTVGAGKSKKEIEQDYNNLTLLWQNIQQNFSSLNVPSLIYNEADVVMRSVRDFC 272

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             D +EIIVS  +     + + K ++    R  R Y    PIF    +E Q+  L+   V
Sbjct: 273 SND-TEIIVSDREVCEAVRKYTKNVLQGKLR-PRLYRGSVPIFTYYRVEDQISELYSNRV 330

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            LPS G ++I  TEA VSIDVNSG+ T E  IE+TA +TN+EA  EI+RQ  LR L+GLI
Sbjct: 331 ELPSGGSLVITLTEAFVSIDVNSGKMTGEDNIEETAYRTNMEALSEISRQANLRGLSGLI 390

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           VVDFIDM + +  ++VE  +K++ K D+A+VQ   I++FGL+  SRQRI+ ++ E  T  
Sbjct: 391 VVDFIDMLKLEYCKNVEFAIKQAFKDDKAKVQFSFINDFGLMVFSRQRIKPNIQEINTTE 450

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +CKG G ++S   V  SILR ++    +    +  +   S V+ ++ N KR  +   E
Sbjct: 451 CLHCKGIGRVKSNEVVVASILRDLQHIANKNQNKSFDLIARSAVIAHIFNNKRDMVSTIE 510

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
             F +++NV I   L    F +++G  +        +        S DK  
Sbjct: 511 KEFNITLNVSIDNSLDADTFILKQGDHINFNDYKPLQNSGCQIVNSRDKEA 561


>gi|302343376|ref|YP_003807905.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
 gi|301639989|gb|ADK85311.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
          Length = 505

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 169/565 (29%), Positives = 274/565 (48%), Gaps = 63/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  +LI+A    ETRV +L +    E+  E      + GNIYL +V RV P +QA    
Sbjct: 1   MSATLLINA-RSYETRVALLENGHCVEVYTERHKHGSLAGNIYLGRVARVLPGMQA---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I      +P +                                    
Sbjct: 56  ---------AFVDIG-----LPKA------------------------------------ 65

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A          +            D      +      + Q  I+++++  Q L
Sbjct: 66  ------AFLYVGDVRPDVSFDEYLAPGAYPDEPEDVAQGGVAAEQGQVRIEQMLQQGQEL 119

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ KE  G+KGA +TT+++L G   VLMP  +      R        +          
Sbjct: 120 MVQVAKEPLGSKGARITTHITLPGHNLVLMPTLNHIGVSRRIADEDERNR--LRQIIEQM 177

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G G I RTA  ++   +++ + ++L+ LW+++      ++ P++++ + ++  RA+R
Sbjct: 178 APGGYGFIARTASENQEPDKLRAEMDFLVSLWESILLRRGRAMVPNMLHRDLSVSLRAVR 237

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL  +++  +I+  E+ Y E  +F+   +P     V  Y    PIF   G+E +L     
Sbjct: 238 DLCTREVDHMIIDCEQEYYEVVEFVSTFLPRLVPCVEFYRGREPIFDAYGVEHELTRALG 297

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GYV+I +TEAL +IDVN+GR    H +E+T L+TNLEA +EIA Q+RLRDL 
Sbjct: 298 RKVWLKSGGYVVIEKTEALTTIDVNTGRYVGGHNLEETILKTNLEAVKEIACQIRLRDLG 357

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDME++ N   V + LK++L+ DR++  V A+S  GL+EM+R+R+R S+ ES 
Sbjct: 358 GLIVIDFIDMEKEANRLRVVESLKDALRGDRSKTNVLAMSPLGLVEMTRKRVRQSLGESL 417

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T+ C YC G+G I+  S+V   + R +E  L    A  + V  H  V   +L ++R  + 
Sbjct: 418 TEPCAYCHGSGKIKDASTVCYELFRELERELPHLEAAVVHVAVHPSVAEMMLQEERYVLE 477

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E+ +GV+I V   + L  + + I
Sbjct: 478 ELESNYGVTIQVEADLTLHREHYAI 502


>gi|114778281|ref|ZP_01453140.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1]
 gi|114551383|gb|EAU53939.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1]
          Length = 506

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 167/565 (29%), Positives = 288/565 (50%), Gaps = 62/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV  + + + EE+  E E  + +KGNIY  +V RV P +QAAFVD
Sbjct: 1   MSVELLVNVT-PFETRVARIENGQAEEIYIERE--RGLKGNIYKGRVQRVLPGIQAAFVD 57

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++ GFL   +I                     A+  +  +++++ HGD     D S 
Sbjct: 58  IGMDKAGFLYAGDI-------------------ATAKQPALELSEEIDHGDDNEVGDDSS 98

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
               P  N                                         I  +I++ Q L
Sbjct: 99  ASNQPRRNA--------------------------------------PPIANLIRDGQEL 120

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ +E   +KG  +T+ + LAGRY V +P+      I+R++ +PV+R+ L  IA  + 
Sbjct: 121 MVQVSREPIASKGPRLTSQVGLAGRYLVYLPHLQHTG-IARRLEDPVERERLLAIAHAIA 179

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G+I+RT    + + +I++D +YL+RLW ++ +   ++    L+++E NL  R +R
Sbjct: 180 PEKG-GLIIRTVAEGKQEADIQQDLDYLLRLWGDIEKRTKSAGLGTLIHKELNLYLRVMR 238

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D    ++ +I +  ++ Y   K F +  MP  ++ +  Y    PIF   G+E  ++S  +
Sbjct: 239 DYVDAEVEKIHIDSKEAYESMKKFARRFMPEVSKRLYYYPGERPIFDVYGVEEAIESALK 298

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S G+++I+QTEAL++IDVNSG       +E+T  +TNLEA  EI  QLRLR+L 
Sbjct: 299 RRVPLKSGGHIVIDQTEALIAIDVNSGSFVGSRNMEETGFKTNLEAVHEIVHQLRLRNLG 358

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDM+E +N + + + L E+LK+D+ +  +  +S  GL+EM+R+R R S+    
Sbjct: 359 GIIVVDFIDMQEDENKQRLMEVLDEALKRDKTKTHIVQLSELGLVEMTRKRTRDSLGRML 418

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            K C  C G G  +S +++   + R V      Y    ++V  H  ++  LL+++   ++
Sbjct: 419 MKECGRCGGIGQAKSPTTICYQLFREVVAEARAYPCEKLMVIAHPSIIDLLLSEENQGVL 478

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           + E      I++    + A   + +
Sbjct: 479 QLEEFLKKEISLKSDEDFASDHYEV 503


>gi|251771497|gb|EES52074.1| Ribonuclease G and E [Leptospirillum ferrodiazotrophum]
          Length = 522

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 170/567 (29%), Positives = 284/567 (50%), Gaps = 50/567 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++LI  +  EET+V ++   R+ E  F+ +  + I GNIY  KV++V P +QAAFVD
Sbjct: 1   MGSEILIHVTE-EETKVAIIEGGRLVEYFFDRKQAQGIVGNIYKGKVSKVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I                                    + +     +L
Sbjct: 60  IGLEKAAFLYVDDI----------------------------------FVEGSEVLPDAL 85

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           ++ AP A+  +E+           V   + + +       P K   +  I+E++ + Q +
Sbjct: 86  QDDAPAASPEEESV----------VAPALSEGESAPSPPPPPKKSGRRPIEEILLDSQEV 135

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L+Q  K+    KG   TTY+SL GRY V MP  +    +SR+ITN  +R  LK++   L 
Sbjct: 136 LLQTTKDPISTKGPRATTYISLPGRYLVYMPQVNHIG-VSRRITNEGERHRLKDLVSSLR 194

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RT     T+ E + D  +L  LW++++     + AP LV  + +++ R IR
Sbjct: 195 THKG-GYIIRTVAEGMTEDEARMDMVFLDLLWEDIKAKYEQAKAPALVRVDLDVVFRTIR 253

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D    D+  +++  +K Y+   +F+K  +P+YA  +  +     +F    ++ Q+    +
Sbjct: 254 DYLTNDVDRLVIDNQKEYQRVLEFVKTYLPAYASKIELWNRKTSLFGEYNVDPQVARALE 313

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I++ EAL  IDVN+GR   E   E+T L+TNLEA EEIA QLRLR++ 
Sbjct: 314 KKVWLKSGGYLVIDRAEALTVIDVNTGRFVGEKDPEETILKTNLEAVEEIAHQLRLRNIG 373

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++KN   V + L+E L +D+AR     IS+ GL+EMSR+R+R  ++   
Sbjct: 374 GIIILDFIDMEKEKNRERVFQGLQELLSRDKARTNALRISDLGLVEMSRKRVREDLVHLL 433

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEY--LLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            + C+YC G GY++S  ++   I   + +           +I++ H DV   +  +K   
Sbjct: 434 GETCSYCDGKGYVKSVRTIIYEIFEDLRKLPSGRGGKDRRVILYVHPDVEAEMAAEK-PF 492

Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565
           +   +      + V        + F I
Sbjct: 493 LDAVQQIIRKKVIVKSDPLYHIEEFVI 519


>gi|256821862|ref|YP_003145825.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069]
 gi|256795401|gb|ACV26057.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069]
          Length = 498

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 272/565 (48%), Gaps = 70/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++LI+ +  +ETRV ++ +  ++E+  E    + I GNIY   V RV P +QAAFVD
Sbjct: 1   MRDEILINVT-PQETRVALVENGVLQEVHLERTTNRGIVGNIYKGIVRRVMPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                      DR A L  ++I    ++     V   ++    D   
Sbjct: 60  IGH---------------------DRAAFLHVADIVAIKNDEEKHAVEGSELLDKQDAHE 98

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +                                               I  ++   Q +
Sbjct: 99  AD-----------------------------------------------IATLLHEGQKI 111

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ++K+  G+KGA +TT++++  R+ VLMP+        R        + LK++    +
Sbjct: 112 IVQVIKDPIGSKGARLTTHITIPSRFLVLMPDNPHVGVSQRIEDLDERTR-LKDLLADTD 170

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G I+RTA    + IE+ RD ++L +LW  + E A  + AP LV+E+  L  R +R
Sbjct: 171 FGGDTGYIIRTAAEGASDIELDRDVKFLSKLWSGISEKAKTTKAPQLVHEDLALELRIMR 230

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   DI  + +   + ++  ++F+   +P     +  YE   PIF    IE ++    +
Sbjct: 231 DIIEDDIERVRMDNSQSFKRIQNFVMEFLPEINNRIEHYEGERPIFDLYNIEEEIKKALE 290

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+QTEA+ ++DVN+G       +E+T  +TNLEAA  +ARQLRLR+L 
Sbjct: 291 RKVPLKSGGYLIIDQTEAMTTVDVNTGAFIGHKNLEETIFRTNLEAATALARQLRLRNLG 350

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDM+++++ R V + L++++++D  +  +  +S  GL+EM+R+R R S+    
Sbjct: 351 GIIIVDFIDMQDEEHKRHVLRTLEKAVERDHVKTSISEVSTLGLVEMTRKRSRESLERLM 410

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C G G++++  ++   I R +      Y     +V  + +VV  LL+++ +++ 
Sbjct: 411 CEPCQQCNGRGFVKTPVTICYEIFREISRASRAYDVQKFLVLANQEVVDCLLDEEASSLA 470

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E      I + +    +   F +
Sbjct: 471 ELEVDIDKPIRLQVESLYSPDQFDV 495


>gi|119355890|ref|YP_910534.1| ribonuclease [Chlorobium phaeobacteroides DSM 266]
 gi|119353239|gb|ABL64110.1| ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides DSM 266]
          Length = 565

 Score =  350 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 159/578 (27%), Positives = 284/578 (49%), Gaps = 24/578 (4%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ++L++ +  +E +V ++ + R+ EL  E    ++  G+IYL +V +V   L+AAFVD 
Sbjct: 6   NKQLLMNKT-GDEIQVALVEEGRLAELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDI 64

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G    GFL F ++          D +AL+++ +   T     +D      V        E
Sbjct: 65  GQKSDGFLHFSDVG-----TTTEDYRALIEDDDDDDTTGTDESDGDEIAAVLSQPAVLPE 119

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
           +    +  S      +      D                 ++      I   +K    +L
Sbjct: 120 QNGKSSARSGAKRLTAPAQDGEDGG---------------RRQSYTQMIAGKLKPNDSIL 164

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241
           VQ++KE    KG+ +T+ +++AGR+ VL+P       +SR++    +R  LK++ R +  
Sbjct: 165 VQVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVIARKERSRLKKLVRSMLP 224

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
             G G I+RT    + +  +K+D E L+  W  + E   ++V P L+++E  +I   +RD
Sbjct: 225 D-GFGAIIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLQDAVPPQLIFKEDTIISSVLRD 283

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
               D++EI+ +    Y+E  ++++   P   + V  Y+   P+F    I   ++S+   
Sbjct: 284 SLNADVTEIVANSPVIYKETLNYIQWAAPEMEKNVTLYQGKLPLFEGYSIAKDVESIFSR 343

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           +V L S GY+II  TEA+V IDVNSGR   +   E+ +L+TNLEAA EI RQLRLRD+ G
Sbjct: 344 KVWLKSGGYIIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGG 403

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +IVVDFIDM ++KN + V   ++  L+ DRA+  +  +S+FG+++++R+RIR S+++   
Sbjct: 404 IIVVDFIDMLDQKNAKKVYDSMRTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMG 463

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSDVVLYLLNQKRATI 539
             C  C G G ++++ +    I R + +Y LQ       + ++    V   L   +  T 
Sbjct: 464 DQCPACGGTGVVQARFTTINQIERWLRKYALQNTMKLQQLDLYVSPTVAEPLQQSEMNTE 523

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
           +++  +  + + V     L    F        + +   
Sbjct: 524 LKWFLQHLLFVRVKPDESLRSDDFRFYSRKNNKEITAE 561


>gi|153873708|ref|ZP_02002199.1| ribonuclease G and E [Beggiatoa sp. PS]
 gi|152069827|gb|EDN67802.1| ribonuclease G and E [Beggiatoa sp. PS]
          Length = 518

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 245/565 (43%), Gaps = 51/565 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   ETRV ++ +  ++E+  E   K+ +  NIY  +V RV P +QAAFV+
Sbjct: 1   MSEEVLINVT-SRETRVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVE 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +I              +          +  + + +  G   +      
Sbjct: 60  IGLERAAFLHLSDI--------------INTHLQAGIEPANQIDELLHEGKTLLVQVIKD 105

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S          N+  +         ++  +              
Sbjct: 106 PLGTKGARLTAQISIPSRYVVLLPYSPNMIGISTRIESPEERQRLK-------------- 151

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                   +                   +M +       S                  +E
Sbjct: 152 ----DIALQHTGMVEQDKLTETKDNNETVMMHAVSSPKTS------------------VE 189

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G ILRT      +  +  D ++L RLW +++E         LVY + +L+ R IR
Sbjct: 190 SGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCSLVYRDLSLVLRTIR 249

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL    I +I +     + +  +F K  +P     +  Y    P+F    I+ +++   +
Sbjct: 250 DLSGSSIDKIKIDSRDTHHQVVNFAKKFIPDLVPHIEHYTGERPLFDLYSIDDEINKALE 309

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+QTEA+ +IDVN+G       +E+T  +TNLEAA+ IARQLRLR+L 
Sbjct: 310 PKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFRTNLEAAQAIARQLRLRNLG 369

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+++++ R V + L++ L++DR +  +  IS  GL+EM+R+R R S+  + 
Sbjct: 370 GIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQLGLVEMTRKRTRESLEHTL 429

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C+G G I++  +V   I R +  +  Q+     +V     +V  +L  +  +++
Sbjct: 430 CRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLVLASQKIVDTMLEDESNSVL 489

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G SI   +    + +L+ I
Sbjct: 490 ELEESIGCSIRFQVETSYSQELYDI 514


>gi|254460829|ref|ZP_05074245.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677418|gb|EDZ41905.1| ribonuclease, Rne/Rng family protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 909

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 270/629 (42%), Positives = 372/629 (59%), Gaps = 5/629 (0%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           +  ++ S   +   E   +     DV      + E            + +     + ++ 
Sbjct: 178 ETPVETSVADEAVEETAPEVDADADVPAEEVAAAESDDDEVEDDHARKAKKATQRDENIE 237

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
           S  +D          K   R+Y IQEV+K RQILLVQ+VKEERGNKGAA+TTYLSLAGRY
Sbjct: 238 SVADDDDVEDIRPPRKPRPRRYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLSLAGRY 297

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            VLMPNT++G  ISRKITN VDRK LKEIA  +EVP G G+I+RTAGA RTK EIKRD+E
Sbjct: 298 CVLMPNTARGGGISRKITNAVDRKKLKEIANEIEVPQGAGLIVRTAGAKRTKTEIKRDYE 357

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YL RLW+ +REL L S+AP  +YEEG+LIKR+IRDLY +DI E+ V GE+GYR AKDFMK
Sbjct: 358 YLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDIDEVFVEGERGYRTAKDFMK 417

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
           ++MPS+A+ V+ Y +P P+F R  +E  L  +    V L S GY++I+ TEALV++DVNS
Sbjct: 418 MIMPSHAKNVKLYTEPMPLFARYQVESYLSGMFNPTVQLKSGGYIVIDTTEALVAVDVNS 477

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           GR+T+E  IEDTA +TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ 
Sbjct: 478 GRATKEGSIEDTATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDK 537

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           LK DRAR+QVG IS FGL+EMSRQR+R  ++E+TT  C  C G G IRS  ++AL+ILR 
Sbjct: 538 LKSDRARIQVGRISGFGLMEMSRQRLRPGMIEATTAPCPSCHGTGLIRSDDNMALNILRQ 597

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           +EE  ++  +  ++V     +  YL+NQKR  I + E R+G+S+ +     +    F +E
Sbjct: 598 IEEEGVRRRSREVLVRCPIAICNYLMNQKREHIAQIELRYGLSVRIEGDPHMVSPDFALE 657

Query: 567 KGSPVQALVNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           K      +V            S     D+++  V +DEAL  +   E   + +       
Sbjct: 658 KFKTATRIVPEPTAHVVSVDTSIMDQVDEDVSDVEEDEALAAVETQEHDGEDKPKKRRRR 717

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                +K        +      +  V ++ S   +  D + D    P +   +   E   
Sbjct: 718 RRRGGKKNNSGGTDVQQGEQGEEGAVAAETSETPSEGDANGDAAPAPVEDAPNADAEASE 777

Query: 684 --HGFTENYDVSIPPVSTPEMESSNSSSD 710
                  +   + P V   +  +  S +D
Sbjct: 778 KPKRVRRSRSRAKPKVEEVDAVAETSEAD 806



 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 75/141 (53%), Positives = 93/141 (65%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E            ++            S 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAESLRLRDEEQDKPKPRRRRRSSA 120

Query: 121 EEVAPIANFSQETEEESIISA 141
           +     ++ +  ++E      
Sbjct: 121 KAAEASSDDAVVSKEIESPED 141


>gi|291278456|ref|YP_003495291.1| ribonuclease E and G [Deferribacter desulfuricans SSM1]
 gi|290753158|dbj|BAI79535.1| ribonuclease E and G [Deferribacter desulfuricans SSM1]
          Length = 507

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 180/565 (31%), Positives = 299/565 (52%), Gaps = 64/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +++I+++   ETRV +L +  V E+  E   KK + GNIY  K+ +V P +Q+AFVD
Sbjct: 1   MSKEIIINSTV-NETRVAILENGSVSEIYIERHKKKGVAGNIYKGKIVKVLPGMQSAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                      D+ A L                              
Sbjct: 60  IGL---------------------DKAAFL------------------------------ 68

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                +A+ + E   E ++  + D   N ++ +           K+   I+++I+  Q +
Sbjct: 69  ----HVADLTTENINEDMLVQSIDEEQNDKEQEDE------FNGKQHIPIEDMIQEGQEI 118

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ KE  G KGA +TT+L++ GRY VLMP  +    +SRKI N  +R+ LK I   ++
Sbjct: 119 VVQVAKEPIGQKGARLTTHLTIPGRYLVLMPYYNHIG-VSRKIENEEERERLKGILTEIK 177

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G+I RT     TK +++ D +YL+R+W+ + E    + AP L+Y++  L+ R +R
Sbjct: 178 PE-NFGLIARTVSEGSTKEDLESDLDYLLRIWNKLSEKMDGANAPQLIYKDLELLYRTLR 236

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   DIS+II+     + + K F +   P+    ++ YE+  PIF    IE++++ +  
Sbjct: 237 DITTNDISKIIIDNRSDFLKLKTFQREYFPNLDIEIKLYENSIPIFDYYNIEIEINRMFD 296

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++I+Q EAL  IDVN+G+   +   E+T L+TNLEAA+EIA QL+LR++ 
Sbjct: 297 RVVWLKSGGYIVIDQAEALTVIDVNTGKYVGKRNFEETILKTNLEAAKEIAYQLKLRNIG 356

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDME+ ++   V + L +  KKDR +V V  IS  GL E++R+R++ S+ ++ 
Sbjct: 357 GIIIVDFIDMEKDEHIEKVLQTLNQEFKKDRGKVTVVNISPLGLFEITRKRVKESITKAL 416

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C YC+G G+I+S+ +V   ILR +      Y    I V  HS VV Y+LN ++  + 
Sbjct: 417 SENCPYCEGRGFIKSKVTVCYDILREIRRIAPFYEKKKIFVEAHSSVVDYMLNDEKECLD 476

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E  + ++I V        + + +
Sbjct: 477 EIELMYNINIEVKANNNFHIEYYEV 501


>gi|218781948|ref|YP_002433266.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01]
 gi|218763332|gb|ACL05798.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01]
          Length = 529

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 179/565 (31%), Positives = 291/565 (51%), Gaps = 48/565 (8%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  K++I+     ETRV ++ D  + EL  E   +  I  NIY  +V RV P +QAAFVD
Sbjct: 1   MEKKLIIN-DAGFETRVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  F+   ++  D+                                        S 
Sbjct: 60  IGLDQAAFIYVDDVVMDF---------------------------------------PSD 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E  +P+ +  +E +E  ++ A +D     E  +   P  +         I+++I+  Q +
Sbjct: 81  ETGSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPPRIRPS------IEDMIREGQEI 134

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ K   G KGA VT+ +++ GR+ VLMP T+    +SR+IT+  +R  LKE      
Sbjct: 135 MVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHIG-VSRRITDSGERNRLKEQLMEAR 193

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           V    G I+RT        ++  + E+L R+W  V        AP L+++E +   R++R
Sbjct: 194 VEP-FGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSAPSLLHQELSASLRSVR 252

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ K++  +++  E+GYRE +DF++  MP     V+ Y+   PIF    +E  +  L +
Sbjct: 253 DLFTKEVDRLVIDSERGYREIQDFLEPNMPGLRDAVQYYDRREPIFDAYQLEGDISRLGR 312

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I +TEALVSIDVN+GR   +  + +T L+TNLEA +EIA QLRLRD+ 
Sbjct: 313 KKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTNLEALKEIAYQLRLRDIG 372

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV+DFIDME+ ++   V + L E+LKKDR+   V  +S  GL++M+R+R R ++    
Sbjct: 373 GIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMGLIQMTRKRTRENINRQL 432

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C YC+G G + S+ S+  +I R +           I V  H ++  +LL ++  T++
Sbjct: 433 SEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKAHPEIARFLLEEENITVL 492

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E R    I +     L  + F I
Sbjct: 493 SLEQRIETPILIQADPALHIERFEI 517


>gi|78189942|ref|YP_380280.1| ribonuclease E and G [Chlorobium chlorochromatii CaD3]
 gi|78172141|gb|ABB29237.1| Ribonuclease E and G [Chlorobium chlorochromatii CaD3]
          Length = 568

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 159/578 (27%), Positives = 289/578 (50%), Gaps = 21/578 (3%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ++L++ +  +E +V ++ + R+ EL  E    ++  G+IYL +V +V   L+AAFVD 
Sbjct: 6   TKQLLMNKT-GDEIQVALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDI 64

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G    GFL F ++          D +AL+++ +          +                
Sbjct: 65  GQKSDGFLHFSDVG-----TTNEDYRALIEDDDDDDAIIGDDIESDEAT----------- 108

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
                + F + ++ E+ +SA   V  +         +   K       I   +K    +L
Sbjct: 109 -GQNDSEFDEASDGETTVSAPKTVARSNSKKPSSGEQSGEKPQTYTQMIAGKLKPNDSIL 167

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241
           VQ++KE   +KG+ +T+ +++AGR+ VL+P       +SR++ +  +R  LK++ R +  
Sbjct: 168 VQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERSRLKKLVRSILP 227

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
             G G I+RT    + +  +K+D E L+  W  + E   ++  P L+++E  +I   +RD
Sbjct: 228 E-GFGAIIRTVAEDQEEALLKQDLEKLLTKWKQIEEKLQDATPPQLIFKEDTIISSVLRD 286

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
               D+SEI+ +    Y+E  ++++   P   + V  Y+   P+F    I   ++S+   
Sbjct: 287 SLTSDVSEIVANSPAIYKETLNYIEWAAPEMVKNVALYQGKLPLFEGYAIAKDVESIFSR 346

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           +V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEAA E+ RQLRLRD+ G
Sbjct: 347 KVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGG 406

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +IVVDFIDM + KN + +   +K  L+ DRA+  +  +S+FGL++++R+RIR S+++   
Sbjct: 407 IIVVDFIDMLDPKNAKKIYDAVKTELRNDRAKSNILPMSDFGLMQITRERIRPSLMQRMG 466

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSDVVLYLLNQKRATI 539
             C  C G G ++++ +    I R + +Y LQ+      + ++    V+  L N    T 
Sbjct: 467 DQCPACGGTGIVQARFTTINQIERWLRKYALQHPLRFQQLDLYVSPTVLEPLQNSDMKTE 526

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
           +++  +  + + V     L    F        + +   
Sbjct: 527 MKWFLQHMLFVTVKGDESLRSDDFRFYNRKNNKDITAE 564


>gi|291288274|ref|YP_003505090.1| ribonuclease, Rne/Rng family [Denitrovibrio acetiphilus DSM 12809]
 gi|290885434|gb|ADD69134.1| ribonuclease, Rne/Rng family [Denitrovibrio acetiphilus DSM 12809]
          Length = 507

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 169/566 (29%), Positives = 299/566 (52%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +++++++   E RV +L +    E+  E  H K + GNIY  +V +V P +Q+AFVD
Sbjct: 1   MSKEIIVNSTL-NEVRVAILENGNPAEIYVERAHSKNVAGNIYKGRVIKVLPGIQSAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FLP  +++                               V +G+     ++++
Sbjct: 60  VGLPKAAFLPAADVY-------------------------------VENGERVSFLENNI 88

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +    + +  Q TE+E                                 I++++K  Q +
Sbjct: 89  DSERTVTDIDQMTEDEQKNI---------------------------PPIEDMLKEGQEI 121

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ KE  G KGA +TT+L++ GRY VLMP       +SRKI +  +R  L+++ + ++
Sbjct: 122 VVQVAKEAIGQKGARLTTHLTVPGRYIVLMPGYEHVG-VSRKIEDEQERDRLRDVLKAIK 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P  MG+I RT  A   + E++ D +YL RLW  +++  ++  +P L+YE+  L+ R +R
Sbjct: 181 SP-NMGLIARTVTAGHDEEELRADVDYLSRLWSKIKDK-MSGKSPCLIYEDHGLVFRILR 238

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D    D+S I++  +  + + K F++  +P     V  + +  PIF    IE+++  +  
Sbjct: 239 DAATSDVSRIVIDNKAEFLKIKSFLREFLPDMNMEVSLFTNDIPIFDYYNIEIEIGRILD 298

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+Q EAL  +DVN+G+   +   EDT L+TNLEA++EIA QL+LR++ 
Sbjct: 299 KKVWLKSGGYIIIDQAEALTVVDVNTGKFVGKRNFEDTILKTNLEASKEIAWQLKLRNIG 358

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDM +++N + V K L+  +K DRA+  V  IS  GL+E++R+R++ S+    
Sbjct: 359 GIIIVDFIDMAKEENQQKVMKALEHEMKSDRAKASVVNISPLGLVEITRKRVQESLSRVL 418

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C YC+G G ++S+ ++   ILR V      +    I++  H DVV  +L+ ++ ++ 
Sbjct: 419 SEACPYCEGRGLVKSKLTICYDILREVRRIAPFFRNRRIVIEAHPDVVDIILDDEKGSLG 478

Query: 541 EYEARFGVSINVVIGIELADKLFYIE 566
           E E    V++ V     L    + + 
Sbjct: 479 EIELMMSVNVEVNANHTLHIHDYEVT 504


>gi|158520115|ref|YP_001527985.1| ribonuclease [Desulfococcus oleovorans Hxd3]
 gi|158508941|gb|ABW65908.1| ribonuclease, Rne/Rng family [Desulfococcus oleovorans Hxd3]
          Length = 517

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 171/568 (30%), Positives = 273/568 (48%), Gaps = 56/568 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +++I+A+   ETRV +L D  + E   E  +   I GNIY A+V RV P +QAAFVD
Sbjct: 5   MSKELIINATE-NETRVALLEDGILAEFFMERGNHLNISGNIYKARVNRVLPGMQAAFVD 63

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  F+   ++                                    +V    + + 
Sbjct: 64  IGLDQAAFIYVTDVFS------------------------------EPSREVENIFNETA 93

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE  P+A   ++  + S+     DV                        I++++   Q +
Sbjct: 94  EEPEPVAVAREDEFDLSVPVPPADVK-----------------------IEDLLSEGQEI 130

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ K   G+KGA +TT +SL GR+ VLMP         R + +   ++ LKE+   L 
Sbjct: 131 LVQVSKSPIGSKGARITTRISLPGRFLVLMPTVDHVGVSKRIVEDGERQR-LKELVVSLR 189

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G I+RTA     K +++++   L+ LW  V++   ++ AP L++ +  +  RA+R
Sbjct: 190 TEP-FGFIVRTAAEGVEKEKLEKEMILLVNLWQKVQKRFASASAPALLHRDMTVSLRAVR 248

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D    +   ++V  +  Y E   F+  +MP     V +Y    PIF    IE  +    +
Sbjct: 249 DYLTHEADRVVVDADYVYDEIMTFLDEIMPRMKASVERYTGSEPIFDAYNIEGDVFRSLK 308

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II  TEALV IDVN+G    +H  E+T  +TNLEAA EIA Q+RLR+L 
Sbjct: 309 KKVWLKSGGYIIIEPTEALVVIDVNTGGYVGKHNFEETVFKTNLEAAREIAYQIRLRNLG 368

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  + N   V   LKE L+KD+++  +   S  GL++M+R+R R+SV    
Sbjct: 369 GIIIIDFIDMAREANREKVFVSLKEFLEKDKSKTTLLPFSELGLIQMTRKRTRNSVARML 428

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC G GY+ S+ ++  +I R +       +   I V  H D+   L  ++   + 
Sbjct: 429 CEPCFYCNGDGYLLSRQTICFNIYREIMRESQDLSGEKITVKVHPDIAEMLHGEESRVVT 488

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG 568
             EA  G  I +    +   + F IE+ 
Sbjct: 489 GLEADLGRQIIIYPVPKFHIEQFEIEEI 516


>gi|193215063|ref|YP_001996262.1| ribonuclease, Rne/Rng family [Chloroherpeton thalassium ATCC 35110]
 gi|193088540|gb|ACF13815.1| ribonuclease, Rne/Rng family [Chloroherpeton thalassium ATCC 35110]
          Length = 582

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 171/567 (30%), Positives = 293/567 (51%), Gaps = 12/567 (2%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L++ S  +E +V ++ D R+ E+  E     +  G+IYL +V +V   LQAAF+D G
Sbjct: 6   KQLLMNKS-GDEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDIG 64

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE- 121
            +  GFL F ++          D +ALL E      D ++  D  +  D     D     
Sbjct: 65  HSSDGFLHFSDVG-----TTNEDYRALLGEDTDDDDDDDSDTDTDSDSDSDSDTDADASS 119

Query: 122 --EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
             E  P +  + ++   S     +D  +     +  + E   ++      I   +K    
Sbjct: 120 DDESNPPSQEATKSSSRSRGRRGHDNNTQNASGEDAAGEKRNRRMSYTQMIASKLKPNDS 179

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           +LVQ++KE   NKGA +T+ +++AGR+ VL+P  S    IS++I N  +R+ LK I R +
Sbjct: 180 ILVQVIKEPISNKGARLTSDITIAGRFMVLLPFGSGHLAISKRIVNRRERRRLKGIVRSI 239

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
               G G I+RT    + ++ +K D E L+  W  + E   ++  P L+++E  +I   +
Sbjct: 240 LPK-GFGAIVRTVAEEQDELLLKTDLEKLLAKWKQIEETVKDAKPPKLIFKEDTMISSVL 298

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD   +D++E++ + +  Y+E   F++   P   + V  Y+   P+F   GI   ++S+ 
Sbjct: 299 RDSLTEDVTELVTNSQHIYKETLTFVRWAAPEMEKRVSHYKGKLPLFESYGIAKDVESIF 358

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             +V L S GY+II  TEA+V IDVNSGR   +   E+ +L+TNLEAA+EI+RQLRLRD+
Sbjct: 359 SRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAKEISRQLRLRDI 418

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFID+ ++KN R V   +K   ++DRA+  +  +S FGL++++R+RIR S+++ 
Sbjct: 419 GGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAKSNILPMSEFGLMQITRERIRPSLMQR 478

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRA 537
               C  C G+G ++++ +    I R + +Y L        + ++    V   L      
Sbjct: 479 MGDECPACGGSGVVQARHTTIHQINRWLRKYALNGNHAFERLDLYVSQTVAQPLFQDAMN 538

Query: 538 TIVEYEARFGVSINVVIGIELADKLFY 564
              ++  +  + +NV     L    F 
Sbjct: 539 PQWKWFLQHLLFVNVKTDDSLRSDDFR 565


>gi|84500980|ref|ZP_00999215.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis
           HTCC2597]
 gi|84391047|gb|EAQ03465.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis
           HTCC2597]
          Length = 920

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 271/626 (43%), Positives = 365/626 (58%), Gaps = 13/626 (2%)

Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160
           E   +         P D +  +    A+           + ++++ S  +D        V
Sbjct: 166 EPSDETGADAADAAPADETGPDEDDEADNGGRDAVRDASAHDDEIESVADDDDQEDIRPV 225

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
            K  +R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  IS
Sbjct: 226 RKPRQRRYKIQEVIKIRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGIS 285

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           RKITN  DRK LKEIA  ++VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L
Sbjct: 286 RKITNAADRKKLKEIANEIDVPTGAGLIVRTAGAKRTKTEIKRDYEYLQRLWEQIRELTL 345

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            S+AP  +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ V+ Y 
Sbjct: 346 KSIAPARIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRNAKDFMKMIMPSHAKNVKHYA 405

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
           D  P+F R  +E  L  +    V L S GY++I  TEALV+IDVNSGR+T+E  IE+TA 
Sbjct: 406 DQMPLFARYQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETAT 465

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           +TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+LK+ LK DRAR+QVG IS
Sbjct: 466 KTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNNAVEKRLKDKLKTDRARIQVGRIS 525

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
            FGLLEMSRQR+R  +LE+TT+ C  C G G IRS  S+AL+ILR +EE  ++  +  ++
Sbjct: 526 GFGLLEMSRQRLRPGMLEATTQPCPSCHGTGLIRSDDSMALNILRQIEEEGVRRRSREVL 585

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
           V     +  YL+NQKR  +   EAR+G+S+ +     L    F +EK       V     
Sbjct: 586 VKCPVGIANYLMNQKREHVAAVEARYGLSVRIEGEPHLVSPDFSLEKFKTATRHVPEPSS 645

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
           V S         + +     +       +ES  + +D    +      R+R         
Sbjct: 646 VISADAMLMDQIDDQIEETPDEDELPETAESTPESEDQKPKKRRRRRRRRRGGGNGENGG 705

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY---------- 690
           A +  D G   D  S ++  D                   + A   +E            
Sbjct: 706 ADNGSDNGSGDDQLSGESGDDQKEAPAQPEKAAEGEEPTASDAAEASEEKPKKRTRSRSR 765

Query: 691 ---DVSIPPVSTPEMESSNSSSDPIV 713
                  P       ++S++ + P  
Sbjct: 766 SRKKAEEPAAEETPADASSAPAQPAP 791



 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/152 (48%), Positives = 91/152 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP +DR+AL++E         A  +                +  
Sbjct: 61  RHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEGEEEKKKPRSRRRKSSKAE 120

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGS 156
                  +    S  +  + + +   D +   
Sbjct: 121 QAERIDSDDAVVSSDAEISGMETIDLDDENEG 152


>gi|281357353|ref|ZP_06243842.1| ribonuclease, Rne/Rng family [Victivallis vadensis ATCC BAA-548]
 gi|281316384|gb|EFB00409.1| ribonuclease, Rne/Rng family [Victivallis vadensis ATCC BAA-548]
          Length = 544

 Score =  345 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 176/578 (30%), Positives = 271/578 (46%), Gaps = 41/578 (7%)

Query: 1   MAN--KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
           M    K +I      E R  +L + R+EE   E +  +   G+IYL K+  +EPSLQAAF
Sbjct: 1   MDKTGKQIILNCEKLERRFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAF 60

Query: 59  VDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118
           VD G  ++ FL + E+      +P  D      E    +   +   +    G+       
Sbjct: 61  VDIGAEKNAFLHYHEM------LPGCD------ELLGRRDSDDDDDEKTVSGN------- 101

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
                           E+ I +          + K        KK      I  + K   
Sbjct: 102 ----------------EQPIQAKRQKRQEAKPNSKVNQEALRRKKKLTVADIPNIFKPGM 145

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
            +LVQ+VK     KGA VTT +S+AGRY VLMP +      +R        + L++I   
Sbjct: 146 EILVQVVKSPISTKGARVTTDISIAGRYLVLMPYSEHIGLSTRIEGGQERDR-LRKILAA 204

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
           LE+P GMG+I RT G  R     KRD + L+  W  + +      AP L+Y E NL++R 
Sbjct: 205 LELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWRKIEKGMDTRNAPALLYTEPNLVERT 264

Query: 299 IRDLYCKDIS-EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
           IRD   ++    ++   +   +  +   +      A  V  Y    P+F    I  QL  
Sbjct: 265 IRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKMAEKVTLYNSGKPVFEAYRINDQLRE 324

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
           + Q EV LP  G +++++TEAL++IDVNSGR  +     +  L+TNLEAAEEIARQLRLR
Sbjct: 325 VFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKGADQPEFILKTNLEAAEEIARQLRLR 384

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           ++ GL+V+DFIDM   ++   V + +K  +K DRA+ +V  +S  GL+EM+RQR   S+ 
Sbjct: 385 NIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRAKTKVLPLSRLGLMEMTRQREHESIK 444

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL--QYTAHNIIVHTHSDVVLYLLNQK 535
           +     C YC G+G ++S  S+++ I R +   L   +Y    + V  H D++  L N+ 
Sbjct: 445 DQVFMPCPYCHGSGRVKSVVSMSVEIQRRLNTVLRESRYRNRPVRVIMHPDILQRLRNED 504

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
              + E E ++   ++      L  + F +        
Sbjct: 505 ALLLRELEEKYKHDLSFRADPMLHSEEFKLVDPDTGDE 542


>gi|194335205|ref|YP_002016999.1| ribonuclease, Rne/Rng family [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307682|gb|ACF42382.1| ribonuclease, Rne/Rng family [Pelodictyon phaeoclathratiforme BU-1]
          Length = 562

 Score =  345 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 158/565 (27%), Positives = 286/565 (50%), Gaps = 27/565 (4%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ++L++ +  +E +V ++ + R+ EL  E    ++  G+IYL +V +V   L+AAFVD 
Sbjct: 6   NKQLLMNKT-GDEIQVALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDI 64

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G    GFL F ++          D +AL+++ +  +       DD   G           
Sbjct: 65  GQKSDGFLHFSDVG-----TTNEDYRALIEDDDDDENGGVDDGDDAPQG----ARSGDEP 115

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
                   +  +  ++  + + D                  +      I   +K    +L
Sbjct: 116 AAGANVKSAARSGSKAPSADDQDRAEK--------------RQSYTQMIAGKLKPNDSIL 161

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241
           VQ++KE   +KG+ +T+ +++AGR+ VL+P       +SR++    +R  LK++ R +  
Sbjct: 162 VQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVARKERSRLKKLVRSMLP 221

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
             G G I+RT    + +  +K+D E L+  W  + E   ++  P L+++E  +I   +RD
Sbjct: 222 E-GFGAIIRTVAEDQEETLLKQDLEKLLAKWTQIEEKLQDAAPPQLIFKEDTIISSVLRD 280

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
               D++EI+ + +  Y+E  ++++   P   + V  Y+   P+F   GI   ++S+   
Sbjct: 281 SLTSDVTEIVANSQLIYKETLNYIQWAAPEMVKNVTFYQGKLPLFEGYGIAKDVESIFSR 340

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           +V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEAA E+ RQLRLRD+ G
Sbjct: 341 KVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGG 400

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +IVVDFIDM ++KN + V   +K  L+ DRA+  +  +S+FG+++++R+RIR S+++   
Sbjct: 401 IIVVDFIDMLDQKNAKKVYDSMKTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMG 460

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRATI 539
             C  C G G ++++ +    I R + +Y LQ+      + ++    VV  L N    T 
Sbjct: 461 DQCPACGGTGVVQARFTTINQIERWLRKYALQHNMKFQQLDLYVSPTVVEPLQNSDMKTE 520

Query: 540 VEYEARFGVSINVVIGIELADKLFY 564
           +++  +  + + V     L    F 
Sbjct: 521 LKWFLQHMLFVQVKPDESLRSDDFR 545


>gi|194332872|ref|YP_002014732.1| ribonuclease, Rne/Rng family [Prosthecochloris aestuarii DSM 271]
 gi|194310690|gb|ACF45085.1| ribonuclease, Rne/Rng family [Prosthecochloris aestuarii DSM 271]
          Length = 551

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 162/577 (28%), Positives = 291/577 (50%), Gaps = 38/577 (6%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L++ S  +E +V ++ D R+ EL  E     +  G+IYL +V +V   L+AAFVD G
Sbjct: 7   KQLLMNKS-GDEIQVALVEDGRLAELVIERPDSLRSIGDIYLGRVHKVVEGLKAAFVDIG 65

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
               GFL F ++          D +AL+++    +  +    D   + DV   +     E
Sbjct: 66  QKSDGFLHFSDVG-----TTNEDYRALIEDDEDDENGALEGEDVEKNDDVQAESKPRASE 120

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
            AP +                                  K+      I   +K    +LV
Sbjct: 121 KAPRSAT-----------------------------PERKRQSYTQMIAGKLKANDSILV 151

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q++KE   NKG+ +T+ +++AGR+ VL+P       +SR++ +  +R  LK++ R +   
Sbjct: 152 QVIKEPISNKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERSRLKKLVRSILPE 211

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G G I+RT   ++ +  +K+D E L+  W  + E   ++  P L+++E  +I   +RD 
Sbjct: 212 -GFGAIIRTVAENQEEELLKKDLEKLLVKWQQIEEKLQDAKPPQLIFKEDTIISSVLRDS 270

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              D++E++ +    Y+E  +++    P   + V  Y+   P+F   GI   ++S+   +
Sbjct: 271 LNSDVTELVANCPSIYKETLNYILWAAPEMEKNVTLYQGKLPLFEGYGIAKDVESIFSRK 330

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEAA E+ RQLRLRD+ G+
Sbjct: 331 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKKEQEENSLKTNLEAAREVVRQLRLRDIGGI 390

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM ++KN++ V   +K  L+ DRA+  +  +S+FGL++++R+RIR S+++    
Sbjct: 391 IVVDFIDMLDQKNSKKVFDSMKTELRHDRAKSNILPLSDFGLMQITRERIRPSLMQRMGD 450

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540
            C  C G+G ++++ +    I R + +Y LQ       + ++    V   L +++R T +
Sbjct: 451 QCPACGGSGVVQARYTTINQIERWLRKYALQRKVMFQKLDLYVSPTVAEPLCDEERKTEM 510

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
           ++  +  + + +     L    F        + + + 
Sbjct: 511 KWFLQHMLFVKIKSDESLRSDDFRFYLQKNNKEITSE 547


>gi|85702983|ref|ZP_01034087.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217]
 gi|85671911|gb|EAQ26768.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217]
          Length = 918

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 274/636 (43%), Positives = 373/636 (58%), Gaps = 5/636 (0%)

Query: 90  LKESNIAQTDSEAVA--DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147
           L++        E  +  + V    V  P D          +   ET+     + ++++ S
Sbjct: 167 LEDEAATAAVPEGTSPMERVPETPVEEPEDRPAPTSQEAGDEEPETDTRDHAAQDDEIES 226

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
             E+        V K   R+Y IQEV+K RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY 
Sbjct: 227 VAEEDDSEDIRPVRKPRARRYKIQEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYC 286

Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267
           VLMPNT++G  ISRKITN VDRK LKEIA  ++VP G G+I+RTAGA RTK EIKRD+EY
Sbjct: 287 VLMPNTARGGGISRKITNAVDRKKLKEIATEIDVPRGAGLIVRTAGAKRTKAEIKRDYEY 346

Query: 268 LMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327
           L RLW+ +REL L S+AP  +YEEG+LIKR+IRDLY +DI E++V GE+GYR AKDFMK+
Sbjct: 347 LQRLWEQIRELTLRSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVEGERGYRIAKDFMKM 406

Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
           +MPS+A+ V+ Y D  P+F R  +E  L  +    V L S GY++I  TEALV+IDVNSG
Sbjct: 407 IMPSHAKNVKHYVDQQPLFARFQVESYLSGMFNPTVQLKSGGYIVIGVTEALVAIDVNSG 466

Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
           R+T+E  IE+TAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+E++NN SVEK+LK+ L
Sbjct: 467 RATKEGSIEETALKTNIEAAEEVARQLRLRDLAGLIVIDFIDMDERRNNASVEKRLKDKL 526

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
           K DRAR+QVG IS FGLLEMSRQR+R  ++E+TT+ C  C G G IRS  S+ALSILR +
Sbjct: 527 KTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPACHGTGLIRSDDSLALSILRQI 586

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
           EE  ++  +  ++V     +  YL+NQKR  + + E R+G+S+ +     L    F +EK
Sbjct: 587 EEEGVRRRSREVLVKCPVGIANYLMNQKRDHVAQIEGRYGLSVRIEGDPRLVSPDFTMEK 646

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                  V         S + +   +I+   + E  +        +   +     E+ G 
Sbjct: 647 FKTATRNVPEVPMAQFVSGSSALMDDIDDDTEIEEDIEDEDEADTDKSDEGKTPSETGGD 706

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              + +   + R            + S       D      +  D    +   +      
Sbjct: 707 GSDKPK---KSRRRRSRRRKPKGGNGSDRNGDGGDDGADDGKDDDEDVASDATDTQTETP 763

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           E    +     T     S+ +S+   K  R    RK
Sbjct: 764 ETVTTAPAEAQTDAETQSDDASEEKPKPKRTRAPRK 799



 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 82/237 (34%), Positives = 114/237 (48%), Gaps = 2/237 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 6   MATKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 65

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL+ E            +D    +    ++ + 
Sbjct: 66  YGGNRHGFLAFSEIHPDYYQIPVADREALMAEEEALANAQNDEDEDRPRRNSGGGDNRND 125

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                    S+        S        V   +    E +  + +          +    
Sbjct: 126 NRNGNGNGRSRSRSRSRSRSEKTQSDDAVTTSEISGMETIDLEDEAATAAVPEGTSPMER 185

Query: 181 LVQIVKEERGNKGAAVTTY--LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
           + +   EE  ++ A  +           +              +  +  D + +++ 
Sbjct: 186 VPETPVEEPEDRPAPTSQEAGDEEPETDTRDHAAQDDEIESVAEEDDSEDIRPVRKP 242


>gi|313673337|ref|YP_004051448.1| rnase g [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940093|gb|ADR19285.1| RNAse G [Calditerrivibrio nitroreducens DSM 19672]
          Length = 505

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 175/571 (30%), Positives = 287/571 (50%), Gaps = 66/571 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +++I+++   ETRV VL +N + E+  E    K I GNIY  KV +V P +Q+A   
Sbjct: 1   MAREIIINST-PNETRVAVLENNSLSEIFLERAKNKGIAGNIYKGKVVKVLPGMQSA--- 56

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                                          D  +
Sbjct: 57  ----------FIDIG-------------------------------HERAAFLHAGDLYI 75

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           ++    +       E   +   N     V                    I+++I+  Q +
Sbjct: 76  DDSENFSLLEDRIAEVEDLDLENGNKVYVP-------------------IEDLIQEGQEI 116

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+ KE  G KGA +TT++++ GRY VLMP+ +    ISRKI +  +R+ LK I   ++
Sbjct: 117 IVQVAKEPIGQKGARLTTHITIPGRYLVLMPSYNHVG-ISRKIEDDGERERLKNILLNIK 175

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
               +G+I RT   + ++ ++K D  YL++ W+ V   +    AP L+YEE +L+ R +R
Sbjct: 176 PA-NVGLIARTVCENSSEEDLKADLNYLLKTWEKVSAKSKEPGAPKLIYEELDLLFRTVR 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL   ++ +IIV  +  Y   K F+K  + +    +  YE+  PIF    IE+++  L +
Sbjct: 235 DLANDEVRKIIVDTKADYLRIKSFVKEYLSNNHISIELYENDMPIFDYYNIEIEISRLLE 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++I+QTEAL  IDVN+G+   +   ++T L+TN+EAA+EIA Q+RLR+L 
Sbjct: 295 RRVWLKSGGYIVIDQTEALTVIDVNTGKFVGKRNFDETILKTNIEAAKEIAWQMRLRNLG 354

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDME++++   V + L + +KKDRA+  V  IS  GL E++R+R++ S+ +  
Sbjct: 355 GIIIVDFIDMEKEEHREKVLQTLLQEMKKDRAKASVVNISPLGLFEITRKRVQDSLNKML 414

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T+ C YC G G ++S+ ++   ILR +      +T   I V  H DV   +LN +R  I 
Sbjct: 415 TEPCPYCDGRGVVKSKLTICYDILREIRRIAPYFTNRKIFVEAHPDVADIILNNERENID 474

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           + E  F +SI +        + + +      
Sbjct: 475 DIEMMFQLSIEIKPNSRYHIEHYEVIPLEKA 505


>gi|328953935|ref|YP_004371269.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
 gi|328454259|gb|AEB10088.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
          Length = 503

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 163/565 (28%), Positives = 274/565 (48%), Gaps = 64/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA++++I+ S   E+RV ++ +  V EL  E +    + GNIY  +V +V P + A    
Sbjct: 1   MASELIINVS-PFESRVALIENGNVVELYIERDSASSLIGNIYKGRVIKVLPGMGA---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                                +         D   
Sbjct: 56  ---------AFVDIG-------------------------------LERSAFLYVADVVD 75

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A + ++    + +S                         +   I+++++  Q +
Sbjct: 76  HYDDFYAEWHKDDRNGNQVSLA-----------------PHFTETQTIPIEDMLQEGQEV 118

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ K     KGA +T++++L GR+ VLMP  +    +SR+I +  +R  LK+    ++
Sbjct: 119 LVQVAKPPLCGKGARLTSHITLPGRHLVLMPTVNHVG-VSRRIADEAERARLKDALLAIK 177

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   G+I RTA       +++ + E+L+++W+N+      +    L++ E +++ R +R
Sbjct: 178 PP-DCGLIARTASEGVEGDKLRSEIEFLLQIWNNILRKKETAPTASLLHRELDIVLRVVR 236

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ K++  +IV   + + +   F++   P     V  Y+   P+F    IE++L     
Sbjct: 237 DLFTKEVDCLIVDDFETHAKIIQFVESFQPLMKFNVELYQSREPLFEHYDIEIELQRALG 296

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II  TEALV IDVN+GR   +H +E+T L+TNLEA +EIA QLRLR++ 
Sbjct: 297 KKVWLKSGGYIIIEPTEALVVIDVNTGRYVGKHNLEETILKTNLEAVKEIAYQLRLRNIG 356

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLIV+DFIDME++ N   V   LKE+LKKDRA+  V  +S  GL+EM+RQR R S+    
Sbjct: 357 GLIVIDFIDMEKEANREKVYNVLKEALKKDRAKTSVLKMSELGLVEMTRQRSRQSLHHML 416

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T+ C YC   G+IRS+ +VA  +LR +   +    +  + +  H +V   L++   ATI 
Sbjct: 417 TEPCPYCDQKGFIRSRLTVAFDMLRELTTMIGSLDSQQVTLEAHPEVAGVLMDLGGATIE 476

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E  +   I +        + + I
Sbjct: 477 SLEGEYHKKIVIRSNPHFHQEKYEI 501


>gi|95931016|ref|ZP_01313744.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684]
 gi|95132912|gb|EAT14583.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684]
          Length = 502

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 160/565 (28%), Positives = 272/565 (48%), Gaps = 66/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  K++I+ +   ETRV +  +  + EL  E   ++ I GNIY  KV RV P +QA    
Sbjct: 1   MTKKLVINTT-SRETRVALQENGHIAELYIERCCERGIVGNIYKGKVIRVLPGMQA---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                                +         D   
Sbjct: 56  ---------AFVDIG-------------------------------LEKAGFLYVADVID 75

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E  A +      +          +                         I+++++  Q +
Sbjct: 76  EMDAVVDYVDGRSSSADPGDEGMEEKPL-------------------PPIEDLLQEGQEI 116

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L QI KE  G KGA +T+++SL GR+ V MP       ISR+I N  +++ L+     + 
Sbjct: 117 LAQIAKEPLGTKGARITSHISLPGRHLVYMPTIDHIG-ISRRIENEEEKERLRTTVEEIR 175

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RTA   +++ +++ D  YL  LW ++     ++ AP L++ + ++  + +R
Sbjct: 176 PA-GSGYIVRTAAEGKSEEDLRADMLYLSELWKDIDSRQKDAEAPCLIHSDLDVTSKVLR 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +DI  I+V  +  Y +   F+   MP     +  ++   P+F   G+EV++     
Sbjct: 235 DILTEDIRHIVVDSQSEYDKIVQFLGTYMPKQQYTIELHDKNEPLFDTYGLEVEIARALG 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL ++DVN+GR   +  +EDT L+TNLEA  EIA QLRLR++ 
Sbjct: 295 RKVWLKSGGYIIIEQTEALTAVDVNTGRFVGKRNLEDTILKTNLEAVREIAYQLRLRNIG 354

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           GLI++DFIDME++ +   V   L+E+LK D+++  +  IS  GL+EM+R+R+R S+  + 
Sbjct: 355 GLIIIDFIDMEKEAHREQVHSALEEALKSDKSKTNILKISELGLVEMTRKRVRESIGRTL 414

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GYI+S++++   I R ++  +     + + +  H DV   L +++ + I 
Sbjct: 415 CEPCPYCEGTGYIKSRTTMVFEIFRKLKREMNDLPGYRVNLQVHPDVAALLYDEESSVID 474

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E  +   I ++       + F I
Sbjct: 475 ELERHYQKQITIIARPNFHIEQFEI 499


>gi|126726396|ref|ZP_01742237.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126704259|gb|EBA03351.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 939

 Score =  343 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 256/611 (41%), Positives = 354/611 (57%), Gaps = 4/611 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
            E + A    +    ++    V   +    +    +     + +  +    + ++ S  +
Sbjct: 226 AEVSEAAPVEKTADKEIGGMGVIDLDGDDDQSNDEMVEGFAKDDGVTPADLDENIESVAD 285

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           +          K   ++Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLM
Sbjct: 286 EDVSEEIRTPRKPRPKRYRIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLM 345

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PNT++G  ISRKITN  DRK LKEIA  +EVP G G+I+RTAGA RTK EIKRD+EYL R
Sbjct: 346 PNTARGGGISRKITNAADRKKLKEIATEIEVPQGAGLIVRTAGAKRTKSEIKRDYEYLQR 405

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ +R L L S+AP  +YEEGNLIKR+IRDLY  DI E+ V GE GY  AK+FMK+LMP
Sbjct: 406 LWEEIRALTLKSIAPAKIYEEGNLIKRSIRDLYNGDIDEVFVEGENGYLVAKEFMKMLMP 465

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           ++A+ VR Y+D  P+F R  +E  L  +    V L S GY++I  TEALV+IDVNSGR+T
Sbjct: 466 THAKNVRHYQDKMPLFARYQVESYLAGMFNPTVQLKSGGYIVIGITEALVAIDVNSGRAT 525

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +E  IE+TA++TNLEAAEE+ARQLRLRDLAGLIV+DFIDME+++NN +VEK++K+ LK D
Sbjct: 526 KESSIEETAVKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEDRRNNAAVEKRIKDRLKTD 585

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGL+EMSRQR+R  +LE+TT+ C  C G G +RS  S+AL I+R +EE 
Sbjct: 586 RARIQIGRISGFGLMEMSRQRLRPGMLEATTQPCPSCHGTGLVRSDDSLALLIIRQLEEE 645

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++  +  ++V     +  +++N+KR  I   E R+G+SI +     L    F IE+   
Sbjct: 646 GVKRKSKEVLVKAPIAIANFMMNEKREHIATIEGRYGLSIRIEADPFLISPDFTIERFKT 705

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
               V                  +E    D  ++    SE+ E ++    ++      R+
Sbjct: 706 ATRNVVEVEAPVISIDTADLPDLVEKEITDAVVV----SETPEGVEGEGEAQPKKKRRRR 761

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           RRRR        + +         + +N  +D          +              E  
Sbjct: 762 RRRRGGGNNNNENGNVDQNAEGQEAGENQNNDQAAEVNSSDAVATDETSAGDNEQTAEAN 821

Query: 691 DVSIPPVSTPE 701
                     +
Sbjct: 822 QAETNGDDAEQ 832



 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 82/168 (48%), Positives = 101/168 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 6   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESLNKRQLAGNIYLAKVTRVEPSLQAAFVD 65

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ALL +           A+               
Sbjct: 66  YGGNRHGFLAFSEIHPDYYQIPVADREALLADERAYAEALNEAAEAEEKKPNRRRRGRGK 125

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
                +A+ S + +        +D V++ E V    P    +K +R  
Sbjct: 126 PRPEAMASNSGDEDAVVSEEIVDDAVTDAEVVAEEKPVKRTRKPRRTK 173


>gi|110679532|ref|YP_682539.1| ribonuclease E, putative [Roseobacter denitrificans OCh 114]
 gi|109455648|gb|ABG31853.1| ribonuclease E, putative [Roseobacter denitrificans OCh 114]
          Length = 919

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 273/632 (43%), Positives = 368/632 (58%), Gaps = 12/632 (1%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
            E+      S+         D +  +  + +      +      +    S ++ + S  +
Sbjct: 178 AEAAQTADASDDQDAQAASEDASEDDTATEDGDDDDDDDDDAPRKSDASSKDDTIESVAD 237

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           D        V K   R+Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLM
Sbjct: 238 DDDQDDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLM 297

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PNT++G  ISRKITN  DRK LKEIA  +EVP G G+I+RTAGA RTK EIKRD+EYL R
Sbjct: 298 PNTARGGGISRKITNAADRKKLKEIANEIEVPQGAGLIVRTAGAKRTKAEIKRDYEYLQR 357

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ +REL L SVAP  +YEEG+LIKR+IRDLY ++I E+ V GE+GYR AKDFMK++MP
Sbjct: 358 LWEQIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMP 417

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           S+A+ V+ Y +  P+F R  +E  L S+    V LPS GY++I  TEALV+IDVNSGR+T
Sbjct: 418 SHAKNVKLYTEGLPLFARYQVESYLASMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRAT 477

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +E  IE TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDM+E+KNN SVEK++K+ LK D
Sbjct: 478 KEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERKNNTSVEKRMKDKLKTD 537

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+QVG IS FGL+EMSRQR+R  ++E+TT+ C  C G G IRS  S+ALSILR +EE 
Sbjct: 538 RARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCQACHGTGLIRSDDSLALSILRQIEEE 597

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +  +  +++     +  +L+NQKR  I   EAR+G+S+ +     L    F +EK   
Sbjct: 598 GTRKRSREVLIKAPVGIANFLMNQKREHIAHIEARYGLSVRIEGDPMLVSPDFSLEKFKT 657

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
              +V+   +          D     V  D+   P   +++  +  +   + E+ G  R 
Sbjct: 658 ATRVVSVAAQHVVSVDTSLMD----QVDADDDEAPAETADNGAETANKENNVENDGEDRP 713

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           +                   +     Q   D++     E          E  A    E  
Sbjct: 714 K--------RRRRRRRRRNKNGNGETQTASDETNAEASEAQGAKTPKKAEPAADSPVEAP 765

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                    P  E   + + P   ++R  K +
Sbjct: 766 AAQTDDAPAPAAEQEEAPAKPKRTRSRTRKPK 797



 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/290 (30%), Positives = 123/290 (42%), Gaps = 4/290 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++E        +A  D+    D       S 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKAKEDE----DEKPKRRRSR 116

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                    +   +  +     +D +  +E +     E+     +R              
Sbjct: 117 SRTKAKGEDTTSEDVVATKDVESDQIDGMETIDLDDSEEGSSPMERVAETPVEEPEGDDA 176

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +  +    +           A        +    +          D  +  +    + 
Sbjct: 177 SAEAAQTADASDDQDAQAASEDASEDDTATEDGDDDDDDDDDAPRKSDASSKDDTIESVA 236

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
                  I         + +I+   +    L   V +    +    L   
Sbjct: 237 DDDDQDDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTY 286



 Score = 40.7 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 39/147 (26%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                    T     +   + +         +  A  P+    +  D      +E+    
Sbjct: 724 NKNGNGETQTASDETNAEASEAQGAKTPKKAEPAADSPVEAPAAQTDDAPAPAAEQEEAP 783

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            + +R R R R+P  +          +  +           E ++ T        A    
Sbjct: 784 AKPKRTRSRTRKPKVEADTQDAPEAEAKAETAAPVEETAPAEATEETPAKPKRKRASRAK 843

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   V   P + P   + ++   P  +
Sbjct: 844 KAAPVEAAPDAEPAPVAQDAEPAPSSQ 870


>gi|78185904|ref|YP_373947.1| ribonuclease E and G [Chlorobium luteolum DSM 273]
 gi|78165806|gb|ABB22904.1| Ribonuclease E and G [Chlorobium luteolum DSM 273]
          Length = 570

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 159/564 (28%), Positives = 295/564 (52%), Gaps = 19/564 (3%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L++ +  +E +V ++ D R+ EL  E    ++  G+IYL +V +V   L+AAFVD G
Sbjct: 7   KQLLMNKT-GDEIQVALVEDGRLAELIIERPESRRSIGDIYLGRVHKVIEGLKAAFVDIG 65

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
               GFL F ++          D +AL+++ +     +                D + EE
Sbjct: 66  QKSDGFLHFSDVG-----TTTEDYRALIEDDDDDDETAADETGTAE--------DGADEE 112

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
            AP+A  + + ++ S  S+ +         +     +  + + +   I   +K    +LV
Sbjct: 113 EAPVAAGAPQEQQGSRQSSRSGGRKPQPQQRKEDGAEKRQSYTQ--LIAGKLKANDSILV 170

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q++KE    KG+ +T+ +++AGR+ VL+P       +SR++ +  +R  LK++ R +   
Sbjct: 171 QVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKLVRSMLPE 230

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G G I+RT    + +  +K+D E L+  W  + E   ++  P L+++E  +I   +RD 
Sbjct: 231 -GFGAIIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLKDAAPPQLIFKEDTIISSVLRDS 289

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              D++EI+ +    ++E  ++++   P   + V  Y+   P+F   GI   ++S+   +
Sbjct: 290 LTSDVTEIVANSPSIHKETLNYIEWAAPEMVKNVSLYQGKLPLFEGYGIAKDVESIFSRK 349

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TN+EAA E+ RQLRLRD+ G+
Sbjct: 350 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLRTNMEAAREVVRQLRLRDIGGI 409

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM + +N++ V   +K  L+ DRA+  +  +S+FG+++++R+RIR S+++    
Sbjct: 410 IVVDFIDMMDARNSKKVYDSMKGELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMGD 469

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSDVVLYLLNQKRATIV 540
            C  C G+G ++++ +    I R + +Y LQ+      + ++    V   L N    T +
Sbjct: 470 QCPACGGSGVVQARFTTINQIERWLRKYALQHAMKFQQLDLYVSPTVAEPLKNSDMNTEL 529

Query: 541 EYEARFGVSINVVIGIELADKLFY 564
           ++  +  + + V     L    F 
Sbjct: 530 KWFLQHMLFVRVKQDESLRSDDFR 553


>gi|145218838|ref|YP_001129547.1| ribonuclease [Prosthecochloris vibrioformis DSM 265]
 gi|145205002|gb|ABP36045.1| ribonuclease, Rne/Rng family [Chlorobium phaeovibrioides DSM 265]
          Length = 564

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 153/577 (26%), Positives = 287/577 (49%), Gaps = 25/577 (4%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L++ +  +E +V ++ + R+ EL  E    ++  G+IYL +V +V   L+AAFVD G
Sbjct: 7   KQLLMNKT-GDEIQVALVEEGRLAELIIERPESRRSIGDIYLGRVHKVIEGLKAAFVDIG 65

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
               GFL F ++          D +AL+++ +      E   +    G   +  + S  +
Sbjct: 66  QKSDGFLHFSDVG-----TTTEDYKALIEDDDDDDDGVEGDEEGDAKGSSAVQAEPSGAK 120

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
               +     +       +                     +      I   +K    +LV
Sbjct: 121 TVARSGGRGPSASGKDSRSEQAEK----------------RQSYTQMIAGKLKANDSILV 164

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q++KE    KG+ +T+ +++AGR+ VL+P       +SR++ +  +R  LK++ R +   
Sbjct: 165 QVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKLVRSMLPE 224

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G G I+RT    + +  +++D E L+  W  + E   ++  P L+++E  +I   +RD 
Sbjct: 225 -GFGAIIRTVAEMQEESLLRQDLEMLLGKWTQIEEKLKDATPPQLIFKEDTIISSVLRDS 283

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              D++EI+ +    ++E  ++++   P   + V  Y+   P+F   GI   ++S+   +
Sbjct: 284 LNSDVTEIVANSPSIHKETLNYIEWAAPDMVKNVSLYQGKLPLFEGYGIAKDVESIFSRK 343

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEAA E+ RQLRLRD+ G+
Sbjct: 344 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGGI 403

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM + +N++ V   +K  L+ DRA+  +  +S+FG+++++R+RIR S+++    
Sbjct: 404 IVVDFIDMMDSRNSKKVYDTMKGELRNDRAKSNILPLSDFGVMQITRERIRPSLMQRMGD 463

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRATIV 540
            C  C G+G ++++ +    I R + +Y LQ +     + ++    V+  L N    T +
Sbjct: 464 QCPACGGSGVVQARFTTINQIERWLRKYALQQSMKFQQLDLYVSPTVIEPLQNSDMKTEM 523

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
           ++  +  + + V     L    F        + +   
Sbjct: 524 KWFLQHLLFVRVKEDESLRSDDFRFYSRKNSKDITAE 560


>gi|225677132|ref|ZP_03788132.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590836|gb|EEH12063.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 587

 Score =  341 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 214/594 (36%), Positives = 330/594 (55%), Gaps = 37/594 (6%)

Query: 5   MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +LI ++    E RV +  +N+V E + E E KKQ++GNIY+A + R+EPSLQA F++YG 
Sbjct: 9   LLIENSICSNEVRVALSINNKVVEFEQEFEEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           N+ GFL F EI  DY+ IP  +++ + +                                
Sbjct: 69  NKQGFLSFSEISLDYFNIPEKEKETIFE-------------------------------- 96

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                 + +  EE+  + ++D  ++    + GS         ++Y +Q+VI   Q +LVQ
Sbjct: 97  ---GYSNDDCIEEASANVSSDSAASKNVNESGSGFVREVPLYKKYKLQDVISVNQKILVQ 153

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KEERGNKGA+ TTY++L GRY V MPN+     +SR+I +   RK LK+I   + +P 
Sbjct: 154 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKDILNLINLPK 213

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
             G+I+RT G+ ++K EI++D+ YL  LW ++++ A +  AP L+Y E ++I R++RD  
Sbjct: 214 RSGLIVRTVGSGKSKKEIEQDYNYLSSLWQSIQKNAFSVNAPSLIYNEADVIMRSVRDFC 273

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             D  E+IVSG++ +   K +    +       R Y    PIF   GIE Q+  L+   V
Sbjct: 274 S-DGIEVIVSGKESFEAVKQYANNALKGSKLRYRLYRGYAPIFTYYGIEDQISELYSNRV 332

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            LPS G +II  TEA VSIDVNSG+ T E  IE+TA +TN+EA  EI+RQ+ LR L+GLI
Sbjct: 333 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 392

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           VVDFIDM + +  R+VE  +K++ K D+A+VQ   I++FGL+  SRQRI+ ++ E  T  
Sbjct: 393 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 452

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C +CKG G I+S   +  SILR ++    +    +  +  HS V+ ++ N KR T+   E
Sbjct: 453 CLHCKGTGRIKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 512

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
             F +++NV I   L    F +++G  V        +        S ++  +  
Sbjct: 513 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQIGDSSNEEADNS 566


>gi|163735119|ref|ZP_02142555.1| ribonuclease E, putative [Roseobacter litoralis Och 149]
 gi|161391577|gb|EDQ15910.1| ribonuclease E, putative [Roseobacter litoralis Och 149]
          Length = 965

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 269/641 (41%), Positives = 367/641 (57%), Gaps = 12/641 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P  + +     +  AQT   +              D +  E     +      +    S 
Sbjct: 224 PVEEPEGDDASAEAAQTADASDDQAAQAASEDTSADDTASEDGDDDDDDDAPRKPDASSK 283

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ + S  +D        V K   R+Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLS
Sbjct: 284 DDTIESVADDDDHDDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLS 343

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPNT++G  ISRKITN  DRK LKEIA  +EVP G G+I+RTAGA RTK EI
Sbjct: 344 LAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANEIEVPQGAGLIVRTAGAKRTKAEI 403

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRD+EYL RLW+ +REL L SVAP  +YEEG+LIKR+IRDLY ++I E+ V GE+GYR A
Sbjct: 404 KRDYEYLQRLWEQIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIA 463

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           KDFMK++MPS+A+ V+ Y +  P+F R  +E  L S+    V LPS GY++I  TEALV+
Sbjct: 464 KDFMKMIMPSHAKNVKLYTEGLPLFARYQVESYLASMFNPTVQLPSGGYIVIGVTEALVA 523

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSGR+T+E  IE TAL+TNLEA++E+ARQLRLRDLAGLIV+D+IDM+E+KNN +VEK
Sbjct: 524 VDVNSGRATKEGSIEQTALKTNLEASDEVARQLRLRDLAGLIVIDYIDMDERKNNAAVEK 583

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++K+ LK DRAR+QVG IS FGL+EMSRQR+R  ++E+TT+ C  C G G IRS  S+AL
Sbjct: 584 RMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCQACHGTGLIRSDDSLAL 643

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           SILR +EE   +  +  +++     +  +L+NQKR  I   EAR+G+S+ +     L   
Sbjct: 644 SILRQIEEEGTRKRSREVLIKAPVGIANFLMNQKREHIAHIEARYGLSVRIEGDPMLVSP 703

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            F +EK      +V    +          D     V  D+  +P   +E   +  +   +
Sbjct: 704 DFSLEKFKTATRVVPVAAQHVVSVDTSLMD----QVDADDEEIPAEVAEHAVETPNTENN 759

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
            E+ G  R +                   +     Q   D++     +          E 
Sbjct: 760 VENDGEDRPK--------RRRRRRRRRNKNGNGEAQTASDETNAEASDAPTAETPKEAEP 811

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                 +              E   + + P   ++R  K +
Sbjct: 812 SPESAVDASAAKTDDAPAAAAEQEEAPAKPKRTRSRTRKPK 852



 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 95/156 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFV+
Sbjct: 58  MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE 117

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++E        +A  D+            + 
Sbjct: 118 YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKAKEDEDEKPKRRRSRSRTK 177

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156
            +     +      ++        + +   D     
Sbjct: 178 AKAEDTTSEDAVATKDVESDQIGGMETIDLDDSEEG 213


>gi|189345576|ref|YP_001942105.1| ribonuclease, Rne/Rng family [Chlorobium limicola DSM 245]
 gi|189339723|gb|ACD89126.1| ribonuclease, Rne/Rng family [Chlorobium limicola DSM 245]
          Length = 566

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 160/579 (27%), Positives = 282/579 (48%), Gaps = 23/579 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++L++    +E +V ++ + R+ EL  E    ++  G+IYL +V +V   L+AAFVD
Sbjct: 5   MNKQLLMN-KIGDEIQVALVEEGRLAELTIERPESRRSIGDIYLGRVHKVVEGLKAAFVD 63

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G    GFL F ++          D +AL+++ +  ++ S    D               
Sbjct: 64  IGQKSDGFLHFSDVG-----TTNEDYRALIEDDDDDESVSSDDGDGDAVEVAATAGGGDP 118

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
               P A   Q            +                  +      I   +K    +
Sbjct: 119 PAAGPHARGPQRNGGRKGPVTEEEKAEK--------------RQSYTQMIAGKLKPNDSI 164

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE   +KG+ +T+ +++AGR+ VL+P       +SR++    +R  LK++ R + 
Sbjct: 165 LVQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVVRKERARLKKLVRSML 224

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RT    + +  +K+D E L+  W  + E   ++  P L+++E  +I   +R
Sbjct: 225 PE-GFGAIIRTVAEQQEESLLKQDLEKLLTKWVQIEEKLKDASPPQLIFKEDTIISSVLR 283

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D    D++EI+ +    Y+E  ++++   P   + V  Y+   P+F    I   ++S+  
Sbjct: 284 DSLTSDVTEIVANSPVIYKETLNYIQWAAPEMEKNVSLYQGKLPLFEGYSIAKDVESIFS 343

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEAA EI RQLRLRD+ 
Sbjct: 344 RKVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIG 403

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDM + KN + V   +K  L+ DRA+  +  +S+FG+++++R+RIR S+++  
Sbjct: 404 GIIVVDFIDMLDPKNAKKVHDAMKTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRM 463

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRAT 538
              C  C G G ++++ +    I R + +Y LQ +     + ++    V   L N +  T
Sbjct: 464 GDQCPACGGTGVVQARFTTINQIERWLRKYALQQSMKFQQLDLYVSPTVAEPLRNTEMKT 523

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
            +++  +  V + V     L    F        + +   
Sbjct: 524 ELKWFLQHMVFVRVKQDESLRSDDFRFYNRKNNKDITAE 562


>gi|294677687|ref|YP_003578302.1| ribonuclease E [Rhodobacter capsulatus SB 1003]
 gi|294476507|gb|ADE85895.1| ribonuclease E [Rhodobacter capsulatus SB 1003]
          Length = 951

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 256/480 (53%), Positives = 330/480 (68%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
           ++ S  E+          +   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLA
Sbjct: 229 EIESVAEEDVAEEIHAPRRPRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLA 288

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           GRY VLMPNT++G  ISRKITN  DRK LKEIA  +EVP G G+I+RTAG+ RT+ EI+R
Sbjct: 289 GRYCVLMPNTARGGGISRKITNAADRKKLKEIASEMEVPQGAGLIIRTAGSQRTRTEIRR 348

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           D+EYLMRLW+ +REL L S+AP  +YEEG+LIKR+IRDLY KDI E++V GE+GYR AKD
Sbjct: 349 DYEYLMRLWEQIRELTLKSIAPAPIYEEGDLIKRSIRDLYSKDIDEVLVEGERGYRVAKD 408

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           FMK++MPS+A+ V+ Y +  P+F R  +E  L S+    V L S GY++I  TEALV+ID
Sbjct: 409 FMKMIMPSHAKNVKHYNEQLPLFARFQVESYLASMFNPVVQLKSGGYIVIGVTEALVAID 468

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNSGR+T+E  IE+TAL+TNLEAAEEI+RQLRLRDLAGLIV+DFIDMEE+KNN +VEK+L
Sbjct: 469 VNSGRATKEGSIEETALKTNLEAAEEISRQLRLRDLAGLIVIDFIDMEERKNNAAVEKRL 528

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           KE LK DRAR+QVG IS FGL+EMSRQR+R  +LESTT+ C +C G G IRS  S+AL +
Sbjct: 529 KEKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSLALQV 588

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR++EE   +  +  ++V     V  YL+N KR  I   EAR+G+++ +     L    F
Sbjct: 589 LRAIEEEGTRKRSREVLVKCPVAVANYLMNAKREHIASIEARYGMAVRIEADPTLVSPDF 648

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            IEK      +V   H     + A    +  E    +E    + ++             E
Sbjct: 649 SIEKFKTATRIVPEVHSAVVHASAELMAEIDEEEIVEEEEDEVEEAAPAVAAAATGEPGE 708



 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 77/87 (88%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MA KMLIDA+H EETRVVV+  N+V+E DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1  MAKKMLIDATHAEETRVVVVDGNKVDEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQ 87
          YGGNRHGFL F EIHPDYYQIP +DRQ
Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRQ 87


>gi|21675068|ref|NP_663133.1| ribonuclease G [Chlorobium tepidum TLS]
 gi|21648306|gb|AAM73475.1| ribonuclease G [Chlorobium tepidum TLS]
          Length = 560

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 161/564 (28%), Positives = 284/564 (50%), Gaps = 26/564 (4%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K L+     +E +V ++ + R+ EL  E     +  G+IYL +V +V   L+AAFVD G
Sbjct: 6   KKQLLMNKIGDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAAFVDIG 65

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
               GFL F ++          D +AL+++ +  +   +   D+    D         E 
Sbjct: 66  QKSDGFLHFSDVG-----TTSEDYRALVEDDDNDENGGDEDDDENEGDDNAEAPAPPREA 120

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
             P      E  ++S   A                    ++      I + +K    +LV
Sbjct: 121 ARPAGQQKSEQGQQSSGDAAE------------------RRQSYTQMIAQKLKPNDSILV 162

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q++KE  G KG+ +T+ +++AGR+ VL+P       +SR++ +  +R  LK++ R +   
Sbjct: 163 QVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPE 222

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G G I+RT    + +  +K+D E L+  W  + E   ++  P L+++E  +I   +RD 
Sbjct: 223 -GFGAIIRTVAEDQDESLLKQDLEKLLAKWTQIEEKLQDAQPPQLIFKEDTIISSVLRDS 281

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              D++EI+ + +  Y E  ++++   P   + V  YE   P+F   GI   ++S+   +
Sbjct: 282 LTTDVTEIVANSKSIYTETLNYIQWAAPDMVKNVSLYEGKLPLFEGYGIAKDVESIFSRK 341

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEAA E+ RQLRLRD+ G+
Sbjct: 342 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGGI 401

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM + KN++ V   +K  L+ DRA+  +  +S+FG+++++R+RIR S+++    
Sbjct: 402 IVVDFIDMMDPKNSKKVYDAMKAELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGD 461

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540
            C  C G G ++++ +    + R + ++ LQ       + +H    V+  + N    T +
Sbjct: 462 QCPACGGTGVVQARFTTINQVERWLRKFALQQKVPFQQLDLHISPTVLEPMRNSDMKTEM 521

Query: 541 EYEARFGVSINVVIGIELADKLFY 564
           ++  +  V + +     L    F 
Sbjct: 522 KWFLQHLVFVRIKSDESLRSDDFR 545


>gi|302036383|ref|YP_003796705.1| ribonuclease G [Candidatus Nitrospira defluvii]
 gi|300604447|emb|CBK40779.1| Ribonuclease G [Candidatus Nitrospira defluvii]
          Length = 503

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 162/565 (28%), Positives = 261/565 (46%), Gaps = 65/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++ I  +  EETRV VL +  V +L  +    +   GNIY  +V +V P +QAAF+D
Sbjct: 1   MGVEIAISIAR-EETRVAVLDNGVVTDLYGDRAKDQDFVGNIYKGRVAKVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  F+   ++  D                             V  GD  +  D   
Sbjct: 60  IGLEKAAFMHVSDLSMD-----------------------------VEPGDTLVEGDDDD 90

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            + + +    +++ +                                  I+E++   Q +
Sbjct: 91  NKDSEVPKPKRQSSKP---------------------------------IEELLSEGQEV 117

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQI K   G KG+ VTTY+SL GRY V MP         R   +    +   +      
Sbjct: 118 MVQISKGPIGTKGSRVTTYVSLPGRYLVFMPTVEHIGVSRRIPRDEERAR--LKEIMKRA 175

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RT      + E++ D E+L  LW +V        AP L++ + +L  R +R
Sbjct: 176 RRPGFGYIVRTVSEGVKEEELRSDVEFLHVLWQDVLTKRDQQPAPSLLHSDLSLSFRVVR 235

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ + +  +++   + Y   K F++   P     +  Y+    +F   G+E ++     
Sbjct: 236 DLFGRRVDRLLIDSREEYNAIKGFVQRFSPEQTSRIHFYDKEESLFDYLGVEQEIARAMS 295

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+ TEA+  IDVN+GR   +   E+T L+ NLEAA EIA Q++LR + 
Sbjct: 296 RKVWLKSGGYLVIDHTEAMTVIDVNTGRFVGKRDQEETILRNNLEAAREIAYQVKLRGIG 355

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDME +KN   V   L +++  D+AR ++  +S+ GL+E+SR+R+R  +L S 
Sbjct: 356 GIIIVDFIDMEREKNRDKVYHALVDAMSSDKARTRISRVSDLGLIEISRERVREDLLRSL 415

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C YC G GY +S  SVA  I R V     +     ++V  H  V L L  Q++  + 
Sbjct: 416 SEPCHYCDGRGYTKSPMSVAYEIFREVRRLGHEIEQQRVVVGAHPAVALLLQEQEQPGVE 475

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E R+   I V     L  + F +
Sbjct: 476 ELERRYSAKILVTPDDRLHLEQFDL 500


>gi|189499019|ref|YP_001958489.1| ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides BS1]
 gi|189494460|gb|ACE03008.1| ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides BS1]
          Length = 570

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 157/564 (27%), Positives = 288/564 (51%), Gaps = 19/564 (3%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L++ S  +E +V ++ + R+ EL  E     +  G+IYL +V +V   L+AAFVD G
Sbjct: 7   KQLLMNKS-GDEIQVALVEEGRLAELVIERPDSLRSIGDIYLGRVHKVVEGLKAAFVDIG 65

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
               GFL F ++          D +AL+++ +    +     D+     +    +   + 
Sbjct: 66  QKSDGFLHFSDVG-----TTTEDYRALIEDDDDDDENGNGDTDEEGKAGMKTQQEQKEDT 120

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
             P    + +    S    N        D           +      I   +K    +LV
Sbjct: 121 RRPSPAGNGQKNGGSRSKGNGASAGKDGD----------GRQSYTQMIAGKLKTNDSILV 170

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q++KE   NKG+ +T+ +++AGR+ VL+P       +SR++ +  +R  LK++ R +   
Sbjct: 171 QVIKEPISNKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERARLKKLVRSMLPD 230

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G G I+RT    + +  +K+D E L+  W+ + E   ++  P L+++E  +I   +RD 
Sbjct: 231 -GFGAIIRTVAELQEEELLKKDLEKLLVKWEQIEEKLKDAKPPQLIFKEDTIISSVLRDS 289

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              D++E++ + +  ++E  ++++   P   + V  Y+   P+F   GI   ++S+   +
Sbjct: 290 LTTDVTELVANSQSIHKETLNYIQWAAPEMEKNVFFYQGKLPLFEGYGIAKDVESIFSRK 349

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEA+ E+ RQLRLRD+ G+
Sbjct: 350 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKKEQEENSLKTNLEASREVVRQLRLRDIGGI 409

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM + KN++ V   +K  L++DRA+  +  +S+FGL++++R+RIR S+++    
Sbjct: 410 IVVDFIDMLDPKNSKKVYDSMKNELRQDRAKSNILPMSDFGLMQITRERIRPSLMQRMGD 469

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540
            C  C G+G ++++ +    I R + +Y LQ       + ++    V   L +  R   +
Sbjct: 470 QCPACGGSGIVQARCTTINQIERWLRKYALQKKMVFQQLDLYVSPTVAEPLRDTDRNIEM 529

Query: 541 EYEARFGVSINVVIGIELADKLFY 564
           ++  +  + + V     L    F 
Sbjct: 530 KWFLQHLLFVRVKQDESLRSDDFR 553


>gi|149200573|ref|ZP_01877581.1| ribonuclease E [Lentisphaera araneosa HTCC2155]
 gi|149136345|gb|EDM24790.1| ribonuclease E [Lentisphaera araneosa HTCC2155]
          Length = 534

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 164/564 (29%), Positives = 281/564 (49%), Gaps = 42/564 (7%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++ I+     ETRV ++ +N + E + E   ++++ G+I+  ++  +E SLQAAFVD G
Sbjct: 2   KQIFIN-KEQLETRVAMVENNTLTEYEVERYDQERLVGSIFKGRIKNLENSLQAAFVDIG 60

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++ FL + ++      IP +    L ++                     +  D     
Sbjct: 61  FQKNAFLHYWDM------IPAAYNDGLFEQ-------------------DAMSKDTVAAM 95

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
            A I +  + T ++S+ S + D    +                    I E+      ++V
Sbjct: 96  DANIGDSFRSTIKKSMKSKDGDEQERMRQEIE--------------RIPEIFPVGSEVIV 141

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q+ K   G KG  VTT LS+ GRY VL+P+TS      R   +    + L+ I R + +P
Sbjct: 142 QVTKGPIGTKGPRVTTNLSIPGRYLVLLPHTSHIGVSKRIQNHKERDR-LRNILRKMSLP 200

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
             MG I RT G  + +     D E L+ +WD +        AP+ +Y E +L+ R+ R  
Sbjct: 201 ERMGCICRTLGDGKPEEYFHNDIEMLLDIWDTMERNRQTQRAPYCLYREPDLMSRSTRYF 260

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
               + E+ +     Y + +  +  +       ++ +    P+F   GI  Q+DS+ + +
Sbjct: 261 LTDSVDEVWIDNHDAYADFRKTIVKISDVNIGKLKHHNKHKPLFQHFGIAKQIDSIFERQ 320

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V+LPS GY+ I++TEAL++ID+NSG++ +     +T L TNLEAAE IARQLRLRD+ GL
Sbjct: 321 VSLPSGGYICIDETEALIAIDINSGKARQGKDHPETILMTNLEAAEAIARQLRLRDIGGL 380

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           +V+DFIDM  KK+   V + LK++++ D+A+ ++  IS  GLLEM+RQR   S+ +S   
Sbjct: 381 VVIDFIDMRSKKDQMQVYRSLKKAVQHDKAKTKISPISQLGLLEMTRQREHQSLKDSLYT 440

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVVLYLLNQKRATIVE 541
            C+ C+G G ++S  SV++ I R ++  L +      + V  H D++  L ++    +  
Sbjct: 441 PCSNCEGKGVVKSMVSVSVEIQRKLQALLKRTKEKIEVRVICHPDILHRLRDEDARILRN 500

Query: 542 YEARFGVSINVVIGIELADKLFYI 565
            E   G +++      L  + F +
Sbjct: 501 MEKSLGGNLSFRADDSLHVEEFKV 524


>gi|258544481|ref|ZP_05704715.1| ribonuclease G and E [Cardiobacterium hominis ATCC 15826]
 gi|258520289|gb|EEV89148.1| ribonuclease G and E [Cardiobacterium hominis ATCC 15826]
          Length = 1302

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 224/666 (33%), Positives = 332/666 (49%), Gaps = 51/666 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV------E 150
           +    A+ D     D+ I   +S ++ A I        E S+ +A  D  +        +
Sbjct: 9   EELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQRHGFLPFK 68

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++            + Q   +++I+  Q +LVQI KEERGNKGAA+TTY+SLAGR+ VLM
Sbjct: 69  EIGKEYLTGSTTAHEGQLAFKDMIEVGQEVLVQIDKEERGNKGAALTTYISLAGRFLVLM 128

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   +SR+I      K L+E    L+VP  MG+I+RTAG  R + E++ D ++L++
Sbjct: 129 PNNPRAGGVSRRIQGDDR-KELRETLDMLDVPENMGIIVRTAGVGRAQEELQWDLDFLLQ 187

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ + E    +    L+Y+E N+I RA+RD    DI +I++  E+ Y++A DFM L+MP
Sbjct: 188 LWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVYQQASDFMTLVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           +    ++ Y+D  P+F R  IE Q++S +Q  V LPS G ++I+ TEALVSID+NS ++T
Sbjct: 248 NNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEALVSIDINSSKAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAA+EIARQ+RLRDL GLIV+DFIDM   +N + VE +L E+ K D
Sbjct: 308 KGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKDVENRLYEATKID 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGLLE+SRQR+R S+ ES+ +VC  CKG G IR   S+ALS+LR +EE 
Sbjct: 368 RARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQSMALSLLRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I       +  YLLN+KRA I + E R  V + +V   +L    +YIE+   
Sbjct: 428 AMKERTRRITGELPVSIATYLLNEKRAVIRQIEQRNKVEVVLVPNADLHTPDYYIERLRD 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES------------------- 611
            +   +T        +          V          ++                     
Sbjct: 488 DELDEDTAPTPSYRLRTRHESHEESDVVAKPGEAVTEQAAVQGVVPRAPAPQVAPTVQKS 547

Query: 612 -------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
                         E+       EE+       +RR R                V   + 
Sbjct: 548 GLAALFSKVVALFKENRDPASAVEETAKTTAGDKRRERTAPARNRRERNERQEPVQPPRK 607

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP------------PVSTPEMESSN 706
             +   +   EP     +N   NG +   E                   P +TP  E ++
Sbjct: 608 TAEAKAESVQEPRQAPRNNENGNGKNQRQEEAARRYEEALQQDIVREEAPAATPRREKAS 667

Query: 707 SSSDPI 712
            S+ P 
Sbjct: 668 RSALPK 673



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/74 (54%), Positives = 53/74 (71%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   ++ +LD E+ +  Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60

Query: 65 RHGFLPFLEIHPDY 78
          RHGFLPF EI  +Y
Sbjct: 61 RHGFLPFKEIGKEY 74


>gi|124516663|gb|EAY58171.1| ribonucleases G and E [Leptospirillum rubarum]
          Length = 527

 Score =  338 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 188/565 (33%), Positives = 284/565 (50%), Gaps = 45/565 (7%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++LI  SH EET+V ++ + ++ E  FE + +  + GNIY  +V +V P +QAAFVD G 
Sbjct: 2   EILIHVSH-EETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGL 60

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
            +  FL   +I+                               V   D+        ++ 
Sbjct: 61  EKAAFLYVDDIY-------------------------------VEGSDILPGEMPQDDQT 89

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
           AP      E+  E  ++ +           G      P +   +  I+E++   Q +L+Q
Sbjct: 90  APPPPVEGESPAEGSLTEDP--------AAGPVSRPEPPRKVPRKPIEEILTEGQEILIQ 141

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KE    KG   TTY+SL GRY V MP  +    +SR+ITN  +R+ LKE+   L+   
Sbjct: 142 MTKEPISTKGPRATTYISLPGRYLVYMPQVNHVG-VSRRITNEEERQRLKEMVNALKGGK 200

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           G G I+RT     ++ E + D  +L  LW ++R  A    AP LV E+ +++ R IRD  
Sbjct: 201 G-GYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETMKAPSLVREDLDVVFRTIRDYL 259

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             ++  + +   K Y+   DF+   MP YA  VR +E P P+F    IE QL    + +V
Sbjct: 260 THEVETLYIDDVKEYKRVMDFIGTYMPDYASRVRLWEGPTPLFASYDIERQLSKALEKKV 319

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY++I++ EAL  IDVN+GR   E+  E T LQTNLEA  EIARQLRLR++ G+I
Sbjct: 320 WLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTNLEAVTEIARQLRLRNIGGII 379

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           ++DFIDME++KN   V + L+ESL  D+AR     IS+ GL+EMSR+R+R  ++    + 
Sbjct: 380 IIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISDLGLVEMSRKRVREDLVHLLGET 439

Query: 484 CTYCKGAGYIRSQSSVALSI---LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           C YC G GY +S  ++A  I   LRSV            I+  H ++   L  ++R  + 
Sbjct: 440 CAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAILFVHPEIQTILQEEERDFLQ 499

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E +    I +        + F I
Sbjct: 500 AVERKIRRQIIIKPDPLSHIEEFSI 524


>gi|163746412|ref|ZP_02153770.1| ribonuclease E, putative [Oceanibulbus indolifex HEL-45]
 gi|161380297|gb|EDQ04708.1| ribonuclease E, putative [Oceanibulbus indolifex HEL-45]
          Length = 941

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 268/630 (42%), Positives = 362/630 (57%), Gaps = 5/630 (0%)

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
           L     +          V   +    +  + E      N + E       + ++ + S  
Sbjct: 151 LDSEEGSSPMERVAETPVEEPEGNGDDGDAFEATDATENNANEANGSDATAKDDSIESVA 210

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ++        V K   R+Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VL
Sbjct: 211 DEDDSEDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVL 270

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITN VDRK LKEIA  +EVP G G+I+RTAGA RTK EIKRD+EYL 
Sbjct: 271 MPNTARGGGISRKITNAVDRKKLKEIATEIEVPKGAGLIVRTAGAKRTKAEIKRDYEYLQ 330

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+ +REL L S+AP  +YEEG+LIKR+IRDLY ++I EI V GE+GYR AKDFMK++M
Sbjct: 331 RLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEIHVEGERGYRIAKDFMKMIM 390

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A+ V+ Y +  P+F R  +E  L  +    V LPS GY++I  TEALV+IDVNSGR+
Sbjct: 391 PSHAKNVKLYNESLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRA 450

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+E  IE TA +TNLEAA E+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK +K+ LK 
Sbjct: 451 TKEGSIEQTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKMMKDKLKT 510

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS FGL+EMSRQR+R  ++E+TT+ C  C G G +RS  ++ALSI+R +EE
Sbjct: 511 DRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLVRSDDNLALSIIRQIEE 570

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +  +  ++V     +  +L+NQKR  I   E R+G+S+ +     L    F+IEK  
Sbjct: 571 EGTRRRSREVLVRAPVGIANFLMNQKREHIAHIEMRYGMSVRIEGDPSLVSPDFHIEKFK 630

Query: 570 PVQALVNTGHKVGSDSQAPSYD-----KNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
                V               D     ++      +EA      S+S +   +   +   
Sbjct: 631 TATRTVPPVSDHVVSVDTSLMDQIDEDESAAEAEAEEAPAAQDPSQSEDGNGNGNANGNG 690

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            G       + +RRR           +     QN  +D  D   + +  ++         
Sbjct: 691 NGEEGDGEGKSKRRRRRRRSRGGRGRNGNGEQQNGAEDQNDGQQQDAAQSDDAEKSQPVE 750

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             T   +    P +  + +    S     K
Sbjct: 751 AETPQSEGETAPAAEEKPKPKGRSRSRKPK 780



 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 96/174 (55%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP +DRQALL+E         A  +D      T        +  
Sbjct: 61  RHGFLAFSEIHPDYYQIPVADRQALLEEERAYAEAQAAKDEDDEKPKRTRSRSRGRSKSQ 120

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
                S +    S +S  +       +      E+     +R            
Sbjct: 121 AAETNSDDAVATSEVSDESSDQIAGMETVDLDSEEGSSPMERVAETPVEEPEGN 174


>gi|255020146|ref|ZP_05292216.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970439|gb|EET27931.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Acidithiobacillus caldus ATCC 51756]
          Length = 509

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 243/565 (43%), Gaps = 72/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +  +E RV ++ +  ++E+  E    + + GNIY   V RV P +QAAF+D
Sbjct: 14  MSEELLINVT-PQEIRVALVDNGVLQEVQIERSSHRGLVGNIYKGVVRRVLPGMQAAFID 72

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +I                              +++ +GD  +     +
Sbjct: 73  IGLERTAFLHAGDIQ----------------------------DEEMDNGDTDLETRADM 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                         +E ++    D V +      G+          +Y +      R  +
Sbjct: 105 AHEVRSVATLLHEGQEVVVQVIKDPVGS-----KGARLSTRITLPGRYLVYMPYVPRLGV 159

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I       +         L G    ++P    G  I R +    + ++       L 
Sbjct: 160 SSRIEDPGERER---------LKGILKAMIPADEDGGYIIRTLAEGTEAEDFASDLDFLG 210

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                            +V E   ++ AP L++++ NL  R +R
Sbjct: 211 RLW-----------------------------QSVHEQVASARAPQLIHQDLNLALRVMR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   DI  + +   + +  A+ F   ++P     +  Y    P+F    +E +++   Q
Sbjct: 242 DVMSDDIQRVRIDSRETFEAARQFCAEVIPEVVERIEHYAGDRPLFDLYNVEDEIERALQ 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
           + VTL S  Y+II+QTEAL ++DVN+G        E+T L+TNLEAA  IARQLRLR++ 
Sbjct: 302 SRVTLKSGAYLIIDQTEALTTVDVNTGAFVGRRNQEETILKTNLEAAAAIARQLRLRNIG 361

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++++ R V + L+++L+ D  R  +  IS  GL+EM+R+R R S+ +  
Sbjct: 362 GMIIIDFIDMEDEEHKRRVHRALEKALQSDHTRCSITQISALGLVEMTRKRTRESLRQIL 421

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC G G++++  ++   ILR +      Y A   +V     V   LL+++  ++ 
Sbjct: 422 CEPCPYCHGRGFMKTAETICYEILREIVRETRAYPAERFVVLASVKVADKLLDEESTSLA 481

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E   G  I V        + + I
Sbjct: 482 ALEEFIGRPIRVQAEQTYTQEQYDI 506


>gi|56478531|ref|YP_160120.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1]
 gi|56314574|emb|CAI09219.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1]
          Length = 1007

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 213/674 (31%), Positives = 321/674 (47%), Gaps = 46/674 (6%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D     D+ I +    +  + I        E S+ +A  D          
Sbjct: 10  QAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGGERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +       P     +  IQE +K  Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLM
Sbjct: 70  FKEISRTYFAPGADAGKVRIQEALKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR++      + L+++   LE+P+GM +I RTA   R   E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRVEGDERTE-LRDVMDQLEIPSGMSLIARTAAIGRNAEELQWDLNYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A +     L+Y+EG+L+ RAIRD +  +I EI++  +  Y +A+ FM  +MP
Sbjct: 189 LWRAIDGAAQSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDVYEQARQFMSHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           +    V++Y D  P+F R  IE Q++S +  +VTLPS G V+I+ TEALVSIDVNSGRST
Sbjct: 249 ANVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVTLPSGGAVVIDHTEALVSIDVNSGRST 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAAEEIARQLRLRDL GLIV+DFIDME +KN R VE  L+++L+ D
Sbjct: 309 KGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVEGLLRDALRHD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGLLE+SRQR+R ++ E++   C  C G G+IRS  S AL ILR +EE 
Sbjct: 369 RARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALHILRILEEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     + +    DV  +LLN+KR  I   E R  + + ++    L      I +   
Sbjct: 429 AMKENTGAVHLQVPVDVATFLLNEKRVDIAHIEVRHKIQLIIIPNRHLETPHHEIIRLRH 488

Query: 571 V----------------------------QALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
                                        +       +      +P+    I     +  
Sbjct: 489 DQLNQEEVALASYQMVGKPAEIDLRLPSKEDTKPPRAEAVVKGISPAQPAPIVEPKTEPV 548

Query: 603 LLPIPKSE-------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
           + P    +             S +      ++ E       R R  R      ++ +   
Sbjct: 549 VAPGLAPKPAGLFQRLFGWLRSEKPAVTPQMAPEIAPKPESRPRAERSDTRRGNNRNRRD 608

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
               +      + +         +             TE  D  +     P     ++  
Sbjct: 609 GQQRTERGERDESTSAAQTARGPVRGERAERPERSERTERSDTGVDRGDRPARPERDNGG 668

Query: 710 DPIVKKTRWWKRRK 723
                + +  + ++
Sbjct: 669 RTRQGRGQRTQPKQ 682



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 2/110 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY A +TR+EPSL+AAFVDYG
Sbjct: 2   KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQAL-LKESNIAQTDSEAVADDVTHGD 111
           G RHGFLPF EI   Y+  P +D   + ++E+     +     +    G+
Sbjct: 62  GERHGFLPFKEISRTYF-APGADAGKVRIQEALKEGQELIVQVEKDERGN 110


>gi|224367786|ref|YP_002601949.1| Rne1 [Desulfobacterium autotrophicum HRM2]
 gi|223690502|gb|ACN13785.1| Rne1 [Desulfobacterium autotrophicum HRM2]
          Length = 519

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 155/565 (27%), Positives = 261/565 (46%), Gaps = 52/565 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++++A+   ETRV +L +  + EL  E + +  I GNIY  K+ RV P +QAAFVD
Sbjct: 1   MLKELVVNAAE-HETRVALLENGTIAELFIEQDDESNITGNIYKGKIQRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I+                             +           +   
Sbjct: 60  IGLAQAAFLYVDDIY----------------------------DETSQELARRFEQESDA 91

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +   P      +T                         +    F  +  I++++   Q +
Sbjct: 92  DPNDPDLKPVDDTPIP---------------------MEWKPSFTTEASIEDLVTEGQEI 130

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQI K   G KG  VT ++SL GR+ VLMP         R   +    +   +      
Sbjct: 131 LVQISKSPIGTKGPRVTAHISLPGRFMVLMPTVDHVGISKRITADSERTR--LKELLTSV 188

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G I RTA     +  +K++  +L + W+++++    S AP L+Y +  +  RA+R
Sbjct: 189 RQDNFGYIFRTAAQGIDEQRLKKEIAFLTKTWESIQKKNKTSAAPTLLYRDLTVTFRAVR 248

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL   +  ++++  + GY     F+  LMP     V  Y+   PIF    IE  +    +
Sbjct: 249 DLLTDEADKLVIDSKIGYESVLSFLDKLMPDIHVSVELYQGKEPIFDAYNIEGDITRALK 308

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+ TEALV+IDVN+GR   +H  ++T L+TNLEA +EIA Q+RLR++ 
Sbjct: 309 KKVWLKSGGYIIIDPTEALVAIDVNTGRYVGKHNFDETILKTNLEAVKEIAYQIRLRNIG 368

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+  ++   V   L E+LK+D+A+  V  +S  GL++M+R+R+R ++  + 
Sbjct: 369 GIIIIDFIDMKRTQHKEKVMNLLIETLKRDKAQTNVLPLSELGLVQMTRKRVRKNLTRTL 428

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC G G + S+ S+   I R +         +   V  H ++   L  ++   I+
Sbjct: 429 CEPCFYCGGDGMLLSKRSICYKIHRDLMSEANDIMGNMFTVKVHPEIAQLLHGEQEHLII 488

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E      I +    +   + ++I
Sbjct: 489 SLEREIRRPITIYPDPQYHIEEYHI 513


>gi|206603577|gb|EDZ40057.1| Ribonucleases G and E [Leptospirillum sp. Group II '5-way CG']
          Length = 526

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 187/565 (33%), Positives = 280/565 (49%), Gaps = 46/565 (8%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++LI  SH EET+V ++ + ++ E  FE + +  + GNIY  +V +V P +QAAFVD G 
Sbjct: 2   EILIHVSH-EETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGL 60

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
            +  FL   +I+                               V   D+        E+ 
Sbjct: 61  EKAAFLYVDDIY-------------------------------VEGSDILPGEMPQDEQT 89

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
            P A   +   E              +   G  P     +   +  I+E++   Q +L+Q
Sbjct: 90  PPPAAEGEIPAEALPSE---------DSAAGVVPRPESPRKMPRKPIEEILTEGQEILIQ 140

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KE    KG   TTY+SL GRY V MP  +    +SR+ITN  +R+ LKE+   L+   
Sbjct: 141 MTKEPISTKGPRATTYISLPGRYLVYMPQVNHVG-VSRRITNEEERQRLKEMVNSLKGGK 199

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           G G I+RT     ++ E + D  +L  LW ++R  A    AP LV E+ +++ R IRD  
Sbjct: 200 G-GYIIRTVAEGMSEAEARSDIIFLELLWQDIRSRAETMKAPSLVREDLDVVFRTIRDYL 258

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
             ++  + +   K Y+   DF+   MP YA  VR +E   P+F    IE QL    + +V
Sbjct: 259 THEVETLYIDDVKEYKRVMDFIGTYMPDYASRVRLWEGATPLFASYDIERQLSKALEKKV 318

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY++I++ EAL  IDVN+GR   E+  E T LQTNLEA  EIARQLRLR++ G+I
Sbjct: 319 WLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTNLEAVTEIARQLRLRNIGGII 378

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           ++DFIDME++KN   V   L+ESL  D+AR     IS+ GL+EMSR+R+R  ++    + 
Sbjct: 379 IIDFIDMEKEKNREKVFLGLQESLAHDKARTNALKISDLGLVEMSRKRVREDLVHLLGET 438

Query: 484 CTYCKGAGYIRSQSSVALSI---LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           C YC G GY +S  ++A  I   LRSV            I+  H ++   L +++R  + 
Sbjct: 439 CAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAILFVHPEIQTILQDEERDFLQ 498

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E +    I +        + F I
Sbjct: 499 AVERKIRRQIIIKPDPLSHIEEFSI 523


>gi|118578792|ref|YP_900042.1| ribonuclease [Pelobacter propionicus DSM 2379]
 gi|118501502|gb|ABK97984.1| RNAse G [Pelobacter propionicus DSM 2379]
          Length = 507

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 276/565 (48%), Gaps = 61/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +++I+A+   ETR+ ++ +  + EL  E   +K I GNIY  +V RV P +QAAFVD
Sbjct: 1   MATELVINAT-SHETRIALIENGTIAELHIERTREKGIIGNIYKGRVIRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++                                              
Sbjct: 60  IGLEKAAFLYVADV---------------------------------------FDAIEEY 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E +        E   + + ++  D                       + I+E+++  Q L
Sbjct: 81  ESLLYNGKKEHEPNGDQLPASQPDFKPL-------------------HPIEELLQEGQEL 121

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQI KE  G KGA +T+++SL GR+ V MP          +     + +     A    
Sbjct: 122 LVQISKEPIGTKGARITSHISLPGRHLVYMPTVDHVGIS--RRIEEENERERLREAVERL 179

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RT    +++ ++  D +YL  LW  + +   N+ AP L++ + ++I++ +R
Sbjct: 180 KQPGSGYIVRTVSEGKSEEDLLSDMQYLSTLWGEITKRKENAPAPSLIHSDLDVIQKVVR 239

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  + +  IIV  +  Y     F+   MP     +  Y+D  PIF   G+EV++     
Sbjct: 240 DIVTEQVDTIIVDSKPDYDRIVQFITTFMPKMKYSIELYDDEEPIFDHFGLEVEISRALG 299

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR++ 
Sbjct: 300 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 359

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+++LK D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 360 GIIIIDFIDMEKEVNRDKVFTALEDTLKSDKSKTNILKISELGLVEMTRKRVRESIGRMM 419

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + CTYC+G GYI+S+++V   I R +   +L       +V  H  V   L +++R  + 
Sbjct: 420 CEPCTYCEGRGYIKSKTTVCHEIFRELRREMLDSRGTKAMVSVHPQVADLLYDEERRGLE 479

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E +F   I V        + F I
Sbjct: 480 ELEKKFRKRITVRAKPGFHQEQFEI 504


>gi|83953705|ref|ZP_00962426.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1]
 gi|83841650|gb|EAP80819.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1]
          Length = 970

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 263/633 (41%), Positives = 363/633 (57%), Gaps = 12/633 (1%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
            +         A      D   P     ++     +     + +   S ++ + S  +D 
Sbjct: 173 DDSKAEGDTPKAAKADAKDAAKPGADDQDDSDDADDSDDSPKAKDASSKDDSIESVADDD 232

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    K   ++Y IQEV+K RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN
Sbjct: 233 DHDDLRTARKPRPKRYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPN 292

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           T++G  ISRKITN  DRK LKEIA  ++VP G G+I+RTAGA RTK EIKRD+EYL RLW
Sbjct: 293 TARGGGISRKITNAADRKKLKEIANEIQVPKGAGLIVRTAGAQRTKAEIKRDYEYLQRLW 352

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           + +REL L S+AP  +YEEG+LIKR+IRDLY ++I E+ V GE+GYR AKDFMK++MPS+
Sbjct: 353 EQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMPSH 412

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A+ V+ Y +  P+F R  +E  L  +    V LPS GY++I  TEALV+IDVNSGR+T+E
Sbjct: 413 AKNVKLYSETLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKE 472

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE TA +TNLEAA E+ARQLRLRDLAGLIV+DFIDM+E++NN +VEK +KE LK DRA
Sbjct: 473 GSIEQTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERRNNAAVEKLMKEKLKTDRA 532

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+QVG IS FGL+EMSRQR+R  ++E+TT+ C  C G G IRS  ++ALSILR +EE   
Sbjct: 533 RIQVGRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLIRSDDNLALSILRQIEEEGT 592

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +  +  +++     +  +L+NQKR  I   E R+G+++ +     L    F +EK     
Sbjct: 593 RKRSREVLITAPVGIANFLMNQKREHIAHIEGRYGMAVRIEGDPALVSPDFSLEKFKTAT 652

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
            +V     V S   +   + +   V    A      +++      N    +  G      
Sbjct: 653 RVVTPIEHVVSVDTSIMDEVDDLDVD---AEADADNADNEPTGNGNGGQNQHNGSDDDND 709

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
              + +R        G  S+     N  ++           TN +  ++ A   TE    
Sbjct: 710 GEGKPKRRRRRRRRRGGKSNGDDAANGENNGDS-------NTNGDNGDSDAPAQTEADTA 762

Query: 693 SIPPVSTPEMESS--NSSSDPIVKKTRWWKRRK 723
                +  +  +   +  + P  K  R   R +
Sbjct: 763 GSKDDAKTDATADGASDDAKPQDKPKRTRSRTR 795



 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 97/154 (62%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP +DR AL++E         A  D+         +    +  A
Sbjct: 61  RHGFLAFSEIHPDYYQIPVADRLALMEEERAYAEAQAAKEDEDEKPKRRTRSRSRSKSKA 120

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
                   T  +   + ++D ++ ++ V     E
Sbjct: 121 EDTVSDDATVSKDADATDSDQINGMQTVDLDDEE 154



 Score = 39.2 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 6/114 (5%)

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
           + +   Q EA     K ++  D   +  S+++    + +R R R R+P  D      V  
Sbjct: 750 DSDAPAQTEADTAGSKDDAKTDATADGASDDAKPQDKPKRTRSRTRKPKADAAAEATVDA 809

Query: 653 VSSIQ------NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
            +         +          +P                 E    +  P  TP
Sbjct: 810 DAKTSEDAKPADADAAEDAPKPKPKRTRTRKPKAAPVEATEEGSQEAPKPEETP 863


>gi|238022128|ref|ZP_04602554.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147]
 gi|237866742|gb|EEP67784.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147]
          Length = 967

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 215/651 (33%), Positives = 322/651 (49%), Gaps = 27/651 (4%)

Query: 94  NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE--- 150
             A+    A+ D  T  D+ I      +    I   +    E S+ +   D   +     
Sbjct: 9   RQAEELRVAIVDGQTLIDLDIETLGKEQRKGNIYTGTITRIEPSLEACFVDYGMDRHGFL 68

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TTY+SLAGRY VLM
Sbjct: 69  PFKEVSRAYFQDYEGGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTYISLAGRYLVLM 128

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    L+VP GM +I RTAG  RT  E+  DF YL++
Sbjct: 129 PNNPRGGGVSRRIEGEDRAE-LKEAMAQLDVPHGMSLIARTAGIGRTSEELAWDFNYLLQ 187

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  + E A     P+L++ E +L+ RAIRD +  DI EI+V   + Y +  +FM  +MP
Sbjct: 188 LWRAIEEAAAAHPEPYLLFMESSLVIRAIRDYFRPDIGEILVDNPEVYEQVSEFMSYVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           +    ++ Y+D  P+F R  IE Q++++   EVTLPS G ++I+ TEALVS+DVNS RST
Sbjct: 248 NNLGRLKLYDDHIPLFSRLQIEQQIETVFSREVTLPSGGAIVIDHTEALVSVDVNSARST 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE  LK++LK+D
Sbjct: 308 RGADIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQREVENTLKDALKRD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IRS  S AL +LR +++ 
Sbjct: 368 RARVQMGKLSKFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHVLRLIQDA 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     +      DV  +LLN+KRA +   E R  VS+ ++    L +  + I +   
Sbjct: 428 AMKENTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNPHLENPHYEISRIRV 487

Query: 571 VQALVNTGHKVGSDSQAPSYD------KNIECVWQDEALLPIPKSESLEDIQDNIVSE-- 622
                N        +Q  S +      K  E     E  +      S   +  +      
Sbjct: 488 DDLDDNAAPSYKRVTQPESSETVPFANKKGEKAMHPEPAVKGVHHASPPPVVASSSQSWW 547

Query: 623 ---------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
                                 K+   R  R   T +  +   +           + +  
Sbjct: 548 ESFKGWLKKLFGGDAGEPAAPAKKSSSRNERSGGTSNKRSNRRNKRRESSEEKSANGNAN 607

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
              +    +N     + G   N   +        +    +++    K+ R 
Sbjct: 608 NNGNSSNGNNGERKNSRGRNANTAANEENAEAKALMQPENATAKAEKEPRN 658



 Score =  127 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 53/78 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A   EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNARQAEELRVAIVDGQTLIDLDIETLGKEQRKGNIYTGTITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 MDRHGFLPFKEVSRAYFQ 79


>gi|149911609|ref|ZP_01900221.1| ribonuclease E [Moritella sp. PE36]
 gi|149805330|gb|EDM65343.1| ribonuclease E [Moritella sp. PE36]
          Length = 1125

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 210/632 (33%), Positives = 326/632 (51%), Gaps = 16/632 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------VE 150
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  ++      ++
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLPLK 68

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++     +    K + +  I++VI     ++VQI KEERGNKGAA+TT++SLAG Y VLM
Sbjct: 69  EISRAYFKQGTGKQRGRPSIKDVIAEGTEVIVQIEKEERGNKGAALTTFISLAGSYLVLM 128

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E+  D + L+ 
Sbjct: 129 PNNPRAGGISRRIEGDERTE-LKTALATLELPEGMGLIVRTAGVGKSAEELDWDLKVLLN 187

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  +++ A +     L+++E N+I RAIRD   +DI EI++   K + EAK+ +KL+ P
Sbjct: 188 HWQAIQDSAKDRQGTFLIHQESNVIARAIRDYLRRDIGEILIDHPKAFEEAKNRIKLIRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SIDVNS R+T
Sbjct: 248 DFIDRIKLYQGDVPLFNHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL TNLEAA+E+ARQLRLRDL GL+V+DFIDM   KN R VE  L++++++D
Sbjct: 308 RGGDIEETALTTNLEAADEVARQLRLRDLGGLVVIDFIDMGPVKNQREVENCLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGL+EMSRQRIR S+ ES+T VC  C G G IR   S+ALSILR +EE 
Sbjct: 368 RARIQLGRISRFGLMEMSRQRIRPSLGESSTHVCPRCDGQGTIRDNESLALSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+   ++I+      V  YLLN+KR +I+  E R+ V   ++    L    F + +   
Sbjct: 428 SLKENTNHIVAQVPVPVAAYLLNEKRNSILRLEKRYKVKSFIIPNENLQTPNFEVSRVKA 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                       +  +  +  +        + L+    +  +  ++ +   +++T   + 
Sbjct: 488 DDDSSELSSTDLAQPREFTRYEPKVNNETVQPLVQQMNTPEVASVRPSQTVKKATSNTKP 547

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           +    + +      H   V S +         S +  +   +       +  A     N 
Sbjct: 548 K-APAQAKSAKPIAHKESVFSRLGKAITGFFASDEKVVV-KETVKQAPKKPVADKTPSNS 605

Query: 691 DVSI-------PPVSTPEMESSNSSSDPIVKK 715
           D                  E+  +      KK
Sbjct: 606 DSDEPRKPRNRRNRKPRNPENVENKQQDANKK 637



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 54/76 (71%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG +
Sbjct: 1  MLINATQKEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          RHGFLP  EI   Y++
Sbjct: 61 RHGFLPLKEISRAYFK 76



 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 10/145 (6%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E     Q   N    V          K            P  +S+ +++ ++   ++   
Sbjct: 625 ENVENKQQDANKKADVEVKQHNKFEAKPKTPTQD----KPAVQSKDVKERKEEGSAQNQA 680

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI----DDSFDMYMEPSDITNHNLLE- 680
            +  +R+RR  R++     ++  V ++                D   +P+  T  +    
Sbjct: 681 VLAERRQRRNLRKKVRVTSNELKVTTESEQNAETSVISDKPQRDENAQPAKRTRRSPRNA 740

Query: 681 -NGAHGFTENYDVSIPPVSTPEMES 704
                  TE+  V    V+ P +  
Sbjct: 741 KTSDVQKTEHAQVQTEQVAKPVIAE 765



 Score = 37.3 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 36/137 (26%), Gaps = 3/137 (2%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR---R 633
              +          D  ++   + EA    P  +       ++   +  G  + +     
Sbjct: 625 ENVENKQQDANKKADVEVKQHNKFEAKPKTPTQDKPAVQSKDVKERKEEGSAQNQAVLAE 684

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           RR+RR              V++      ++  +  +P    N    +             
Sbjct: 685 RRQRRNLRKKVRVTSNELKVTTESEQNAETSVISDKPQRDENAQPAKRTRRSPRNAKTSD 744

Query: 694 IPPVSTPEMESSNSSSD 710
           +      ++++   +  
Sbjct: 745 VQKTEHAQVQTEQVAKP 761


>gi|254466116|ref|ZP_05079527.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium
           Y4I]
 gi|206687024|gb|EDZ47506.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium
           Y4I]
          Length = 973

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 259/581 (44%), Positives = 353/581 (60%)

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           + +      + + E+      + + ++ S  E+          K   R+Y IQEVIK RQ
Sbjct: 231 AEDTARDEGDENGESLRADAAAKDENIESVAEEDDSEDIRPPRKPRPRRYKIQEVIKVRQ 290

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
           +LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LK+IA  
Sbjct: 291 VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIASE 350

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
           L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP  +YEEG+LIKR+
Sbjct: 351 LDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRS 410

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           IRDLY ++I E++V G++GYR AKDFMK++MPS+A+ V+ Y+D  P+F R  +E  L  +
Sbjct: 411 IRDLYNREIDEVLVEGDRGYRIAKDFMKMIMPSHAKNVKHYQDALPLFARYQVESYLGGM 470

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
               V L S GY++I  TEALV+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRD
Sbjct: 471 FNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEASIEETALKTNLEAAEEVARQLRLRD 530

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           LAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR+R  ++E
Sbjct: 531 LAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIE 590

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT  C +C G G IRS  S+ALSILR +EE   +  +  ++V     +  +L+NQKR  
Sbjct: 591 ATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREVLVRCPVSIANFLMNQKREH 650

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
           I + EAR+G+S+ +     L    F +EK       V               ++      
Sbjct: 651 IAQIEARYGLSVRIEGDAHLVSPDFVLEKFKTASRTVPAATAPVVSVDTSIMEQVDADEA 710

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
             +    I   E+ ED        +     R+RR+     +     +      D    + 
Sbjct: 711 LQDEEEAIVAVEAAEDDAPQDDKPKRKRRRRRRRKSGNGDQAQAGENGEDTSDDQDQPKE 770

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
             D++ +   E       ++ E              P    
Sbjct: 771 EADEALEADSEAEVPAAEDVKEKKPSRTRTRSRSRKPKSKQ 811



 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/146 (54%), Positives = 95/146 (65%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  ++              
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDEEKPSKPKRSRRS 120

Query: 121 EEVAPIANFSQETEEESIISANNDVV 146
           +  A  A  S     E+     +D  
Sbjct: 121 KSSAKAAKTSSGDAVETKEVGVSDEK 146


>gi|193211693|ref|YP_001997646.1| ribonuclease, Rne/Rng family [Chlorobaculum parvum NCIB 8327]
 gi|193085170|gb|ACF10446.1| ribonuclease, Rne/Rng family [Chlorobaculum parvum NCIB 8327]
          Length = 560

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 160/564 (28%), Positives = 287/564 (50%), Gaps = 27/564 (4%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++L++ +  +E +V ++ + R+ EL  E     +  G+IYL +V +V   L+AAFVD G
Sbjct: 7   KQLLMNKT-GDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAAFVDIG 65

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
               GFL F ++          D +AL+++ +  +   E   D+      +  +  S E 
Sbjct: 66  QKSDGFLHFSDVG-----TTSEDYRALVEDDDDDENGGEDEEDEGEAEASSEASAPSREA 120

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
             P      +  +ES   A                    ++      I + +K    +LV
Sbjct: 121 SRPGNQQKSDGRQESAADARE------------------RRQSYTQMIAQKLKPNDSILV 162

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q++KE  G KG+ +T+ +++AGR+ VL+P       +SR++ +  +R  LK++ R +   
Sbjct: 163 QVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPE 222

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G G I+RT    + +  +K+D E L+  W  + E   ++  P L+++E  +I   +RD 
Sbjct: 223 -GFGAIIRTVAEMQDETLLKQDLEKLLVKWKQIEEKLQDAKPPQLIFKEDTIISSVLRDS 281

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              D++EI+ +    Y E  ++++   P   + V  +E   P+F   GI   ++S+   +
Sbjct: 282 LTTDVTEIVANSNSIYTETLNYIQWAAPDMVKNVSLHEGKLPLFEGYGIAKDVESIFSRK 341

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V L S GY+II  TEA+V +DVNSGR   +   E+ +L+TNLEAA EI RQLRLRD+ G+
Sbjct: 342 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGGI 401

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM + KN++ V   +K  L+ DRA+  +  +S+FG+++++R+RIR S+++    
Sbjct: 402 IVVDFIDMIDAKNSKKVYDAMKTELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGD 461

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540
            C  C G G ++++ +    + R + ++ LQ       + +H    V+  +      T +
Sbjct: 462 QCPACGGTGVVQARFTTINQVERWLRKFALQQKMPFQQLDLHVSPTVLEPMRESDMKTEM 521

Query: 541 EYEARFGVSINVVIGIELADKLFY 564
           ++  +  V + +     L    F 
Sbjct: 522 KWFLQHMVFVRIKSDESLRSDDFR 545


>gi|325141210|gb|EGC63710.1| ribonuclease E [Neisseria meningitidis CU385]
          Length = 919

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG    +E  D +    +  E++  N         + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRSERGDRAAERANEAEIQGRNVQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|83942486|ref|ZP_00954947.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36]
 gi|83846579|gb|EAP84455.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36]
          Length = 979

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 257/587 (43%), Positives = 352/587 (59%), Gaps = 4/587 (0%)

Query: 136 ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195
           +   S ++ + S  +D          K   ++Y IQEV+K RQILLVQ+VKEERGNKGAA
Sbjct: 220 KDASSKDDSIESVADDDDHDDLRTARKPRPKRYKIQEVVKVRQILLVQVVKEERGNKGAA 279

Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255
           +TTYLSLAGRY VLMPNT++G  ISRKITN  DRK LKEIA  ++VP G G+I+RTAGA 
Sbjct: 280 LTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANEIQVPKGAGLIVRTAGAQ 339

Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           RTK EIKRD+EYL RLW+ +REL L S+AP  +YEEG+LIKR+IRDLY ++I E+ V GE
Sbjct: 340 RTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGE 399

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           +GYR AKDFMK++MPS+A+ V+ Y +  P+F R  +E  L  +    V LPS GY++I  
Sbjct: 400 RGYRIAKDFMKMIMPSHAKNVKLYSETLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGV 459

Query: 376 TEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435
           TEALV+IDVNSGR+T+E  IE TA +TNLEAA E+ARQLRLRDLAGLIV+DFIDM+E++N
Sbjct: 460 TEALVAIDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERRN 519

Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
           N +VEK +KE LK DRAR+QVG IS FGL+EMSRQR+R  ++E+TT+ C  C G G IRS
Sbjct: 520 NAAVEKLMKEKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLIRS 579

Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
             ++ALSILR +EE   +  +  +++     +  +L+NQKR  I   E R+G+++ +   
Sbjct: 580 DDNLALSILRQIEEEGTRKRSREVLITAPVGIANFLMNQKREHIAHIEGRYGMAVRIEGD 639

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             L    F +EK      +V     V S   +   + +   V   +       +++    
Sbjct: 640 PALVSPDFSLEKFKTATRVVTPIEHVVSVDTSIMDEVDDLDV---DPEADADNADNEPSG 696

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             N    +  G         + +R        G  S+     N  + + D      +  +
Sbjct: 697 NGNGGQSQHNGSDDDNDGEGKPKRRRRRRRRRGGKSNGDDAANGEN-NGDSNTNGDNGDS 755

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               E  A       D      +    + +     P   ++R  K +
Sbjct: 756 DAPAETEADTAGAKDDTKTDAAADAASDDAKPQDKPKRTRSRTRKPK 802



 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 99/158 (62%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MPKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR AL++E         A  D+         +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALMEEERAYAEAQAAKEDEDEKPKRRTRSRSRS 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
           +  A        T  +   + ++D ++ ++ V     E
Sbjct: 121 KSKAEDTVSDDATVSKDADATDSDQINGMQTVDLDDEE 158


>gi|310815579|ref|YP_003963543.1| ribonuclease E, putative [Ketogulonicigenium vulgare Y25]
 gi|308754314|gb|ADO42243.1| ribonuclease E, putative [Ketogulonicigenium vulgare Y25]
          Length = 941

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 255/528 (48%), Positives = 342/528 (64%), Gaps = 3/528 (0%)

Query: 99  DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
           D EA  DD + G   +          P A  + + E+E         V  +         
Sbjct: 181 DLEAEGDDPSEGLSPMVTVAETPVETPAAEAAADDEDEDDTPDPAHEVETISADDSDDVR 240

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
            V K   R+Y IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  
Sbjct: 241 PVRKTRMRRYKIQEVIKVRQVMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGG 300

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           ISRKITN  DRK LKEIA+ LEVP G G+I+RTAG+ RTK EIKRD+EYLMRLW+ +R L
Sbjct: 301 ISRKITNVADRKKLKEIAQELEVPQGAGLIIRTAGSQRTKAEIKRDYEYLMRLWEQIRAL 360

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
            L+S AP  +YEEG+LIKR+IRDL   +I E+IV G++G+R A DFMK++MP   R V  
Sbjct: 361 TLSSNAPAKIYEEGDLIKRSIRDLTSTEIDEVIVEGDEGFRTAYDFMKMMMPGQERSVIH 420

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y D  P+F R  +E  L  +    V LPS GY++I  TEALV+IDVNSGR+T+E  IE T
Sbjct: 421 YHDQMPLFARYQVEGYLGGMFNPVVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQT 480

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
           A +TNLEAA+EIARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+ ++ LK DRAR+QVG 
Sbjct: 481 ATKTNLEAADEIARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRFRDKLKDDRARIQVGR 540

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
           IS FGLLEMSRQR+R  ++E+TT+ C++C G G +RS  ++ L+I+R +EE  ++  +  
Sbjct: 541 ISGFGLLEMSRQRLRPGMIEATTQPCSHCHGTGLLRSDDNLGLTIIRQLEEEGVRGRSRE 600

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV--- 575
           ++VH    +V +L+NQKR  I   E R+G+S+ V   I L    + IEK      +V   
Sbjct: 601 VVVHAPVGIVNFLMNQKREHIAGIEQRYGMSVRVEADITLVSPDYSIEKLKAATRVVQAA 660

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
                V + +     +     V +D+  +   ++ +   +Q     ++
Sbjct: 661 PAAPTVVTGTAELMEEIIAAEVIEDDIAVVEEEAVAAAPVQTPEGEDD 708



 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 92/122 (75%), Gaps = 3/122 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLIDA+H EETRVVV+  N+VE+ DFE   K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MSKKMLIDATHAEETRVVVVDGNKVEDFDFERAAKRQLSGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHP YYQIP +DR+ALL E      D+ A +DDV+  D    ++ S 
Sbjct: 61  YGGNRHGFLAFAEIHPSYYQIPVADREALLAEEMA---DAHADSDDVSPADDQPTDEKSG 117

Query: 121 EE 122
           E+
Sbjct: 118 EK 119


>gi|198284647|ref|YP_002220968.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667189|ref|YP_002427321.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249168|gb|ACH84761.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519402|gb|ACK79988.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 496

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 242/565 (42%), Gaps = 72/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +  +E RV ++ +  ++EL  E    + + GNIY   V RV P +QAAFVD
Sbjct: 1   MSEELLINVT-PQEIRVALVDNGVLQELQVERSGHRGLVGNIYKGVVRRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +I          D + +  E++I          +V             
Sbjct: 60  VGLERTAFLHAADIQ--------DDSEEIQGETDIEPRAGHHEVRNVCALLREGQEVLVQ 111

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
               P+ +                          G+          +Y +      R  +
Sbjct: 112 VIKDPVGS-------------------------KGARLSTRITLPGRYLVYMPFVPRIGV 146

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I   E   +         L  +   ++P    G  I          + L E     +
Sbjct: 147 STRIESPEERMR---------LKEQLKSVIPPEEGGGYI---------IRTLAEGVTETD 188

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
               +  + R          +       +            S AP  ++ + NL  R +R
Sbjct: 189 FSGDIDFLRR----------LWDSIRARLER----------SPAPGQIHSDLNLALRMMR 228

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   +I  + +   +    A  F + ++P  A  +  Y    P+F    +E +++   Q
Sbjct: 229 DVMSDNIQRVRIDSRETVDAALTFCQGVIPEVADRIEHYSGERPLFDLYNVEDEIERALQ 288

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
           + VTL S  Y+II+QTEAL ++DVN+G        E+T  +TNLEAA  IARQ+RLR++ 
Sbjct: 289 SRVTLKSGAYLIIDQTEALTTVDVNTGGFVGRRNQEETIFKTNLEAAAAIARQMRLRNIG 348

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++++ R V++ L++S++ DR R  +  IS+ GL+EM+R+R R S+ ++ 
Sbjct: 349 GMIIIDFIDMEDEEHKRRVQRALEKSIQSDRTRCNITQISSLGLVEMTRKRTRESLRQTL 408

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC G G++++  ++   ILR +      Y A   +V     V+  LL+++  ++ 
Sbjct: 409 CEPCPYCHGRGFMKTAETICYEILREIVRETRAYPAERFVVLASPQVMEKLLDEESTSLA 468

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E   G  I V        + + I
Sbjct: 469 ALEEFIGRPIKVQAEATYTQEQYDI 493


>gi|119503336|ref|ZP_01625420.1| DNA polymerase III delta prime subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119460982|gb|EAW42073.1| DNA polymerase III delta prime subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 973

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 201/580 (34%), Positives = 317/580 (54%), Gaps = 20/580 (3%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++          + + +  I++V+K    ++VQ+ KEERG KGAA+TTY+SLAGRY VL
Sbjct: 71  KEIAHQYYRSTAPEGEGKTRIKDVLKEGTEVIVQVDKEERGTKGAALTTYISLAGRYMVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  K   ISR+I      + L++    L +P GMGVI+RTAG  R+  E++ D +YL+
Sbjct: 131 MPNNPKAGGISRRIEGDDRTE-LRDALSQLNIPDGMGVIIRTAGVGRSPEELQWDLDYLL 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           +LW ++   +  + AP L+Y+E ++I R+IRD    D+ ++++  +  +++A DF+ ++M
Sbjct: 190 QLWSSISSASDENKAPVLLYQESDVIIRSIRDYLRDDVDQVLIDDKAAWQQAHDFVTMVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P YA+ +R YED  P+F R  +E Q++S  Q EV LPS G ++I+ TEAL+SID+NS R+
Sbjct: 250 PKYAQRIRYYEDATPLFNRFQVEGQIESAFQREVRLPSGGSIVIDPTEALISIDINSARA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE TALQTNLEAA+E+ARQLRLRD+ GL+V+DFIDM   KN R+VE +++++L+ 
Sbjct: 310 TKGSDIEQTALQTNLEAADEVARQLRLRDMGGLVVIDFIDMNANKNQRAVENRIRDALEV 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E +  VC  C G G IR   S+AL+ILR ++E
Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGEISAMVCPRCTGKGTIRDTKSLALAILRLLQE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +      +V  +LLN+KR+ + + E+  GV + ++    +    F + +  
Sbjct: 430 EAAKDRTGEVRAVVPVEVAAFLLNEKRSAVNDIESSSGVRVLIIPNPHMETPHFDVIRLR 489

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +   +T        + P     +          P P    +   +   V+ E      
Sbjct: 490 DDEVEESTTLSYEVAIETPD-PIAVRDEVSAIPAAPQPLVRGVTPQEPAPVAAEPEAPAP 548

Query: 630 KRRRRRRRRRPATDHHDA----------------GVVSDVSSIQNVIDDSFDMYMEPSDI 673
               R  +++P T+                       +D+ ++    D   +   EP + 
Sbjct: 549 MAETRDIKQQPKTESPQKTGILTRMWGALFAPAPSEEADIETLTETEDSGHEESSEPKEN 608

Query: 674 TNHNLLENGAHGFT--ENYDVSIPPVSTPEMESSNSSSDP 711
            N      G    T     D  +    T E++ +   +D 
Sbjct: 609 ANRQRRSRGGRNRTRSRRPDSDVQAEDTDEVDQTTVDADE 648



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KMLI+A+  EE RV ++   R+ +LD E+  +   K N+Y AK+TRVEPSL+AAFVD+G
Sbjct: 2  KKMLINATQPEEIRVAIVDGQRLNDLDIENRSRGSTKANVYKAKITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLP  EI   YY+
Sbjct: 62 AERHGFLPLKEIAHQYYR 79


>gi|56696769|ref|YP_167130.1| ribonuclease [Ruegeria pomeroyi DSS-3]
 gi|56678506|gb|AAV95172.1| ribonuclease, Rne/Rng family [Ruegeria pomeroyi DSS-3]
          Length = 993

 Score =  333 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 273/588 (46%), Positives = 366/588 (62%), Gaps = 2/588 (0%)

Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193
            +    S ++ + S  E+          K   R+Y IQEV+K RQ++LVQ+VKEERGNKG
Sbjct: 247 GKADAASKDDSIESIAEEDDAEDLRPARKPRARKYKIQEVVKVRQVMLVQVVKEERGNKG 306

Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253
           AA+TTYLSLAGRY VLMPNT++G  ISRKITN VDRK LKEIA  ++VP G G+I+RTAG
Sbjct: 307 AALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIAAEMDVPQGAGLIVRTAG 366

Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313
           A RTK EIKRD+EYL R+W+ +REL L S+AP  +YEEG+LIKR+IRDLY +DI E++V 
Sbjct: 367 AKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVE 426

Query: 314 GEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVII 373
           GE GYR AKDFMK++MPS+A+ V++YED  P+F R  +E  L+S+    V L S GY++I
Sbjct: 427 GEGGYRIAKDFMKMIMPSHAKNVQRYEDQLPLFARFQVESYLNSMFNPTVQLKSGGYIVI 486

Query: 374 NQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
             TEALV+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+
Sbjct: 487 GVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDER 546

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
           KNN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR+R  ++E+TT+ C  C G G I
Sbjct: 547 KNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCPSCHGTGLI 606

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           RS  ++ALSILR +EE   +  +  ++V     +  YL+NQKR  I + EAR+G+S+ + 
Sbjct: 607 RSDDNMALSILRQIEEEGTRRRSREVLVRCPVGIANYLMNQKREHIAQIEARYGLSVRIE 666

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
               L    F +EK       V           +   D  I+     E      +  +  
Sbjct: 667 GDAHLVSPDFSLEKFKTATRSVPQVQAPVVSVDSRLMD-QIDADEAFEEEDEAEEVRTEP 725

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
             +     +      RKRRRRRRR+       D+    D   I +   +        +  
Sbjct: 726 RGETAGEGDGDGKPKRKRRRRRRRKNGGNGGEDSTADGDSGEIGDEAAEDAADAAPEAAE 785

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                         E  +  +  V+  E E+   +  P  K+TR  K+
Sbjct: 786 DAAVTEAEAEPAAAEGGEAEVEAVAEAEAEAEAPAKTP-RKRTRTRKK 832



 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 100/152 (65%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++E        +A  +D   G        S 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKARDEDEEGGKSRSKPKRSR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                 A   + ++    +  +   +S +E +
Sbjct: 121 SRSRSKAESLRSSDPVETMDVSETEISGMETI 152


>gi|288940467|ref|YP_003442707.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
 gi|288895839|gb|ADC61675.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
          Length = 1001

 Score =  333 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 204/577 (35%), Positives = 314/577 (54%), Gaps = 4/577 (0%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++     E    K   +  I+E ++  + ++VQI KEERGNKGAA+TT++SLAGRY VL
Sbjct: 71  KEIARSYFEPDSVKPGSRVSIKESVREGREVVVQIDKEERGNKGAALTTFISLAGRYLVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   +SR+I      + L++    L++P  MG+I+RTAG  +   E++ D +YL+
Sbjct: 131 MPNNPRAGGVSRRIEGQDRTE-LRDAMSQLQLPEDMGMIVRTAGVGKNVEELQWDLDYLL 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           +LW  +     +  AP L+Y+E ++I R+IRD    DI EI++     Y  A++F++ +M
Sbjct: 190 QLWQAIVSSGESRKAPFLIYQESDVIIRSIRDYLRVDIGEIVIDDRTVYERAENFIRQVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P   + +R Y+D  P+F R  IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 250 PQNLKKLRLYQDEVPLFTRYQIETQIESAFQREVRLPSGGSIVIDHTEALTSIDINSARA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL V+DFIDM   KN R+VE +L+E+LK+
Sbjct: 310 TKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMGPPKNQRAVEDRLREALKQ 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQV  IS FGLLEMSRQR+R S+ ES+ ++C  CKG G IR   S+ALSILR +EE
Sbjct: 370 DRARVQVARISRFGLLEMSRQRLRPSLGESSQQICPRCKGQGTIRGVESLALSILRILEE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++ +   +       V  +LLN+KR  I++ E R  V I ++    +    + IE+  
Sbjct: 430 EAMKESTQRLQAQLPVSVATFLLNEKRRAILDIEQRQEVEILLIPNEHIQTPEYRIERIR 489

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVI 628
                     +  S +     + +       +   P    E   + I  ++ +   T   
Sbjct: 490 AQDIAGKAPEETPSYTIKAVPEPSAAAPHYAKLGQPARIEEPAVKLIAPSVPAPRQTERP 549

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSI--QNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           R        R+         ++  + +    +  +++     + +D        +G+   
Sbjct: 550 RPTPPTTVSRKETERAESESLLKRIWTGLFLSRSNEAGSAQPQAADKRAVAGGRSGSKAG 609

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +E    S P         + SS D   +  +    R+
Sbjct: 610 SEPSAASRPQERATNATGTASSGDESGRSRQARDERR 646



 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 50/77 (64%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV  +    +  LD ES  ++Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQPEELRVATVDGQLLYNLDIESPGREQKKANIYKGVITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI   Y+
Sbjct: 62 AERHGFLPLKEIARSYF 78


>gi|257093129|ref|YP_003166770.1| Rne/Rng family ribonuclease [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045653|gb|ACV34841.1| ribonuclease, Rne/Rng family [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 951

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 207/650 (31%), Positives = 320/650 (49%), Gaps = 22/650 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D     D+ I +    ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQKLIDLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +       P     +  I+E ++  Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEVSRAFFQPGVETSRATIKEALREGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR++      + L+E+   L+VP GM +I RTA   R   E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRVEGTERTE-LREVMDQLQVPPGMSLIARTAAIGRNGEELQWDLNYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  + + A       L+Y+EG+L+ RAIRD +  DI EI++  ++ Y +A+ FM  +MP
Sbjct: 189 LWKAIEDAAQQQKGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDEVYDQAQQFMSHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                +++Y D  P+F R  IE Q++S +  +V LPS G ++I+ TEALVS+DVNSGR+T
Sbjct: 249 GTVNRIKRYRDDVPLFSRFQIEHQIESAYSRQVGLPSGGAIVIDHTEALVSVDVNSGRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL+TNLEAAEE+ARQLRLRDL GLI++DFIDME  +N R VE +++++L+ D
Sbjct: 309 RGADIEETALKTNLEAAEEVARQLRLRDLGGLIIIDFIDMENARNQREVENRIRDALRFD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGLLE+SRQR+R ++ E++   C  C G G+IRS  S AL ILR +EE 
Sbjct: 369 RARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCSGTGHIRSTESAALHILRILEEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     +      DV  +LLN+KR  +   E R  VSI ++  I L      + +   
Sbjct: 429 AMKDNTAAVHAQVPVDVATFLLNEKRTDVQAVELRHKVSILLIPNIHLETPQHSVVRVRH 488

Query: 571 VQALVNTGHKVG------SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            +   +   +          + A S                I    + +        + +
Sbjct: 489 DELAQDDLQQASYRMVDMPTNDAGSEAPAAGDGRAARPEAAIKGVTTAQPAPLVGEPQPA 548

Query: 625 TGVIRKRRR-----------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                               RR+         +          +    D+      P   
Sbjct: 549 AAEPPATSGNRFLTRILSWFRRKPEAAPPAVAEPVPPRRSGPPREAQRDARRSGPRPPRR 608

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +     G  ++   + P  + P +  S        ++ R  +  +
Sbjct: 609 DEARDVPETRAGREQSDASAQPTQAVPAVARSEPQRPRTPREPREAREPR 658



 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY A +TR+EPSL+AAFVDYG
Sbjct: 2   KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   ++Q      +A +KE+     +     D    G+
Sbjct: 62  AERHGFLPFKEVSRAFFQPGVETSRATIKEALREGQELIVQVDKDERGN 110


>gi|226939997|ref|YP_002795070.1| ribonuclease E [Laribacter hongkongensis HLHK9]
 gi|226714923|gb|ACO74061.1| Probable ribonuclease E [Laribacter hongkongensis HLHK9]
          Length = 1068

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 213/632 (33%), Positives = 312/632 (49%), Gaps = 19/632 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+   Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP
Sbjct: 70  FKEVSRTYFKNHEGGRPRIQDVLSEGQELIVQVEKDERGNKGAALTTYVSLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I        L+E+   L+ P GM +I RTAG  R+  E++ D  YLM+L
Sbjct: 130 NNPRGGGVSRRIEGEER-NELRELMSQLQTPQGMSLIARTAGIGRSLEELQWDLNYLMQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  V   A    AP L+++EG+L+ RAIRD +  +I EI+V  E+ + +A+ FM  +MP 
Sbjct: 189 WTAVESAASAQTAPFLIFQEGSLVIRAIRDYFQPEIGEILVDTEEIWDQARQFMSHVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q+++    +V LPS G ++I+ TEALVSIDVNS R+T+
Sbjct: 249 NVNRIKLYKDDVPLFSRFQIEHQIETAFSRQVALPSGGAIVIDHTEALVSIDVNSARATK 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE TA  TNLEAA+EIARQLRLRDL GL+V+DFIDME  KN R VE++LK++LK DR
Sbjct: 309 GADIETTACNTNLEAADEIARQLRLRDLGGLVVIDFIDMENPKNQREVEQRLKDALKADR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ S+ E++   C  C G G+IR   S AL+ILR + E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLQPSLGETSHIPCPRCSGTGFIRGTESSALNILRILTEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   EAR  V I ++  I L    + I +    
Sbjct: 429 MKENTGAVHAQVPVDVATFLLNEKRADLFGIEARLKVGIVLIPNIHLETPHYKIVRVRRD 488

Query: 572 QALVNTGHKVGSD----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           + L               +      +     + +   P    + +   Q    + E+  V
Sbjct: 489 ELLEQAEEFFAPSYTLVKEPEGDAVDTYLQDRSKPERPQAAVQGITPQQPAPEARETRPV 548

Query: 628 IRKRRRR-----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                 R           R   +P  +     V     + +                   
Sbjct: 549 AAPVAARPGLLARVLGWLRGDSQPQAEAPAPAVQGSREARKPASGSRGGNRAAAPAAAGD 608

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
              +         ++         E E+ N +
Sbjct: 609 ANQKRDRKQSRAKHEEQRRRQQDGETENGNGN 640



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 55/78 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y++
Sbjct: 62 TDRHGFLPFKEVSRTYFK 79


>gi|296840699|ref|ZP_06863242.2| ribonuclease E [Neisseria polysaccharea ATCC 43768]
 gi|296840177|gb|EFH24115.1| ribonuclease E [Neisseria polysaccharea ATCC 43768]
          Length = 927

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVSEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DIEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG    +E  D +    +  E++  N       + + P   +
Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRSERGDRAAERANEAEIQDRNIQPAATVADAAPSETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 VQTGKRRR 684



 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87


>gi|163741253|ref|ZP_02148645.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385606|gb|EDQ09983.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           2.10]
          Length = 978

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 276/601 (45%), Positives = 369/601 (61%), Gaps = 3/601 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
            AQ  S    +     D          + A   + +         + + ++ S  ++   
Sbjct: 204 EAQDASSENGEAEGAADTATTEADDAADDADADDSADTDAAADATAKDENIESVADEDDS 263

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                V K   R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT+
Sbjct: 264 EDIRPVRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTA 323

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKITN  DRK LK+IA  L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ 
Sbjct: 324 RGGGISRKITNAADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQ 383

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +REL L S+AP  +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+
Sbjct: 384 IRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAK 443

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+ Y+D  P+F R  +E  L ++    V L S GY++I  TEALV+IDVNSGR+T+E  
Sbjct: 444 NVKNYQDQLPLFARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGS 503

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+
Sbjct: 504 IEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARI 563

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS FGL+EMSRQR+R  ++E+TT  C +C G G IRS  S+ALSILR +EE   + 
Sbjct: 564 QVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRR 623

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
            +  ++V     +  YL+NQKR  I + E R+G+S+ +     L    F +EK      +
Sbjct: 624 RSREVLVRCPVSIANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFKTASRV 683

Query: 575 VNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           V            S     D +      DEA +    S++ E        E      RKR
Sbjct: 684 VPVATAPVVSVDTSIMDQVDADEASDEADEAEVEANDSDAAEVQAAGDEGEGDNKPKRKR 743

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           RRRRRR+    D  D+   +   +  +    S D   + +D        + A     + +
Sbjct: 744 RRRRRRKSSGADGDDSNNAAQGDANADDQKASDDAAADDADAQAEPAEGSDAKEAEGDGE 803

Query: 692 V 692
           V
Sbjct: 804 V 804



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 92/143 (64%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  D+         +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRR 120

Query: 121 EEVAPIANFSQETEEESIISANN 143
                    S +  E   +S   
Sbjct: 121 GRTKAADVKSADVVETKDVSPET 143


>gi|187477607|ref|YP_785631.1| ribonuclease E [Bordetella avium 197N]
 gi|115422193|emb|CAJ48717.1| ribonuclease E [Bordetella avium 197N]
          Length = 1015

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 202/587 (34%), Positives = 309/587 (52%), Gaps = 30/587 (5%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR++  
Sbjct: 85  RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L++    L+VP GM +I RTAG  R   E++ D  YL++LW  +   A ++ AP
Sbjct: 145 EDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLAYLLQLWTAIDGAARDNAAP 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM ++MP   + V++Y D  P+
Sbjct: 204 ILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAAAFMSVVMPDNVQRVKRYRDDTPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++ +   V LPS G V+I+ TEALV++DVNS RSTR   IE+TAL+TNLE
Sbjct: 264 FSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTRGADIEETALRTNLE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L  DRARVQ+G IS FGL+
Sbjct: 324 AADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R ++ E +   C  C G G IR   S AL +LR +EE  ++     +      
Sbjct: 384 ELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALHVLRLLEEEAMKENTAAVHAQVPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV  +LLN+KRA I + EAR  V++ ++    L     +IE+       +         +
Sbjct: 444 DVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPHHHIERLRHDDPRLEETKTSFELA 503

Query: 586 QAPSYDKNIECVWQD------------EALLPIPKSESLEDIQDNI-------------- 619
           +AP+ D       Q+                P P S      +                 
Sbjct: 504 EAPATDVTWSPREQEVKARPEALVKGITPAQPAPVSTPAPAAKPAEGSGFGGLFKRLINW 563

Query: 620 --VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
              S E+    +   + +R           G         +  + +     E  +     
Sbjct: 564 ISGSSETKPAEKSAEQSKRPSGNRAKRAQDGQERRGERHGSDRNRNRRETSEGQEQRRGA 623

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSS-DPIVKKTRWWKRRK 723
             ++       N   ++P       ++  + + +   + T     R+
Sbjct: 624 RRQDETRTEQRNEQRAVPEQRAESRQNRTTENRNAEARNTETRDNRE 670



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110



 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 31/141 (21%), Gaps = 2/141 (1%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
              +     S +++              +    E    +           + +RR  RR+
Sbjct: 567 SSETKPAEKSAEQSKRPSGNRAKRAQDGQERRGERHGSDRNRNRRETSEGQEQRRGARRQ 626

Query: 640 P--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
               T+  +          ++  + + +     +  T            T          
Sbjct: 627 DETRTEQRNEQRAVPEQRAESRQNRTTENRNAEARNTETRDNRENLAAETRALAPETDGE 686

Query: 698 STPEMESSNSSSDPIVKKTRW 718
            TP    +        ++   
Sbjct: 687 GTPRNGRNRRGRGRGRREDGV 707


>gi|260433831|ref|ZP_05787802.1| ribonuclease E [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417659|gb|EEX10918.1| ribonuclease E [Silicibacter lacuscaerulensis ITI-1157]
          Length = 924

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 264/561 (47%), Positives = 351/561 (62%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151
           E +      ++ AD     D   P+     E A   +  +   +    + +  + S  +D
Sbjct: 178 EESKTGEPDDSAADADLGVDAEEPSSPLEPEDAGDGSDEEVAAKPDAAAKDESIESVADD 237

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                     K   R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMP
Sbjct: 238 DDSEDIRPPRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMP 297

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           NT++G  ISRKITN  DRK LKEIA  ++VP G G+I+RTAGA RTK EIKRD+EYL RL
Sbjct: 298 NTARGGGISRKITNAADRKKLKEIASEIDVPKGAGLIIRTAGAKRTKSEIKRDYEYLQRL 357

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +REL L S+AP  +YEEG+LIKR++RDLY ++I E++V GE GYR AKDFMK++MPS
Sbjct: 358 WEQIRELTLKSIAPAKIYEEGDLIKRSVRDLYNREIDEVLVEGEAGYRIAKDFMKMIMPS 417

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A+ V++YED  P+F R  +E  L S+    V L S GY++I  TEALV+IDVNSGR+T+
Sbjct: 418 HAKNVKRYEDQLPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATK 477

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+LK+ LK DR
Sbjct: 478 EGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNLAVEKRLKDKLKTDR 537

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+QVG IS FGLLEMSRQR+R  +LE+TT+ C  C G G IRS  ++AL+ILR +EE  
Sbjct: 538 ARIQVGRISGFGLLEMSRQRLRPGMLEATTQPCPSCHGTGLIRSDDNMALAILRQIEEEG 597

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            +  +  ++V     +  YL+NQKR  I + EAR+G+S+ V   + L    F +EK    
Sbjct: 598 TRRRSREVLVRCPVSIANYLMNQKREHIAQIEARYGLSVRVEGDVHLVSPDFSMEKFKTA 657

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
              V         + A   D       + E      +     + +     +      +K 
Sbjct: 658 TRAVPEVAAPVVSASASLMDLIDSEEDEIEDDAVASEQSEQPEEEAKPKRKRRRRRRKKS 717

Query: 632 RRRRRRRRPATDHHDAGVVSD 652
                +   A     A   ++
Sbjct: 718 GGNGEQPEAANGEDKADAATE 738



 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/135 (57%), Positives = 90/135 (66%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  +          +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEEQAYAEAMRARDEAEETKPRKRRSRSRT 120

Query: 121 EEVAPIANFSQETEE 135
           +          ET E
Sbjct: 121 KASEVETADPVETLE 135


>gi|254511652|ref|ZP_05123719.1| ribonuclease, Rne/Rng family protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535363|gb|EEE38351.1| ribonuclease, Rne/Rng family protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 918

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 261/567 (46%), Positives = 344/567 (60%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           ++        E V       +         E  A       E ++    + +  + S  +
Sbjct: 205 EQPAEEVAAEEVVEAAGEISEAENDGTAEAETEADDEEADSEGKQTDATAKDASIESVAD 264

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           +          K   R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLM
Sbjct: 265 EDDSEDIRPPRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 324

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PNT++G  ISRKITN  DRK LK+IA  ++VP G G+I+RTAGA RTK EIKRD+EYL R
Sbjct: 325 PNTARGGGISRKITNAADRKKLKDIAAEIDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQR 384

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ +REL L S+AP  +YEEG+LIKR+IRDLY +DI E++V GE GYR AKDFMK++MP
Sbjct: 385 LWEQIRELTLQSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVEGEGGYRIAKDFMKMIMP 444

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           S+A+ V++YED  P+F R  +E  L  +    V L S GY++I  TEALV+IDVNSGR+T
Sbjct: 445 SHAKNVKRYEDALPLFARYQVESYLAGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRAT 504

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+LK+ LK D
Sbjct: 505 KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNSAVEKRLKDKLKTD 564

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+R  +LE+TT+ C  C G G IRS  ++ALSILR +EE 
Sbjct: 565 RARIQMGRISGFGLLEMSRQRLRPGMLEATTQPCPACHGTGLIRSDDNMALSILRQIEEE 624

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +  +  ++V     +  +L+NQKR  I + EAR+G+S+ +   + L    F +EK   
Sbjct: 625 GTRRRSREVLVRCPVSIANFLMNQKREHIAQIEARYGLSVRIEGDVHLVSPDFSLEKFKT 684

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
              +V           A   D       ++ A    P     E                 
Sbjct: 685 ASRVVPEATAPVVSVDASLMDMVDATDEEESAEDTPPVQGEEESKPKRKRRRRRRKKGAG 744

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQ 657
                       +   A   + V S +
Sbjct: 745 NGDAPEGTTDEGEAAAAETDAQVDSTE 771



 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/154 (50%), Positives = 98/154 (63%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  +          +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEADEAKPKKRRSRSRS 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
           +     +N   ET + S   +  + +   +  + 
Sbjct: 121 KAADVKSNDPVETMDVSSEPSGMETIDLDDGEQS 154


>gi|325522996|gb|EGD01422.1| ribonuclease E [Burkholderia sp. TJI49]
          Length = 586

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 199/539 (36%), Positives = 297/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + N     P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 191 RAIEAASQNGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +   A    PK E+            S    R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSPAPQR 549



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|189423540|ref|YP_001950717.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ]
 gi|189419799|gb|ACD94197.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ]
          Length = 503

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 170/565 (30%), Positives = 285/565 (50%), Gaps = 65/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA++++I+ +   ETR+ ++    + EL  E   +K I GNIY  +V RV P +QAAFVD
Sbjct: 1   MASELVINVT-AHETRISLIEKGTIAELYIERTREKGIVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL              +D    ++E        +         D      H +
Sbjct: 60  IGLEKAAFLY------------VADVFDAIEEYENLMDGGKKEDHHDDSSDQEFKVLHPI 107

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E++                                                  ++  Q L
Sbjct: 108 EDL--------------------------------------------------LQEGQEL 117

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KE  G KGA +T+++SL GR+ V MP       ISR+I    +R+ L+EI   L 
Sbjct: 118 LVQVSKEPIGTKGARITSHISLPGRHVVYMPTVDHVG-ISRRIEEEEERERLREIVDRLR 176

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G G I+RTA   +T+ +++ D EYL ++W  +      + AP L++ + +++++ +R
Sbjct: 177 QP-GCGFIVRTASEGKTEEDLRADMEYLAKIWAEIVNKKEKATAPCLIHADLDVVQKVVR 235

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   D++ I++  +  +     F+   MP     +  Y++  PIF + G+EV++     
Sbjct: 236 DIVTDDVNRIVIDSKADHDRIVQFISTFMPKMKSSIELYDEEEPIFDQYGLEVEISRALG 295

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR++ 
Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 355

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+++LK D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 356 GIIIIDFIDMEKEVNREKVYAALEDALKSDKSKTNILKISELGLVEMTRKRVRESIGRMM 415

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S++++   I R +   +L      +++  H  V   L +++R  + 
Sbjct: 416 CEPCPYCEGRGYVKSKTTICHEIFRELRREMLDIRGTKVLLSVHPQVADLLYDEERRGLE 475

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E +F   + V        + F +
Sbjct: 476 ELEKKFKKRVTVRAKPGFHQEQFEV 500


>gi|114762878|ref|ZP_01442310.1| ribonuclease, Rne/Rng family protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544488|gb|EAU47495.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. HTCC2601]
          Length = 985

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 268/653 (41%), Positives = 369/653 (56%), Gaps = 21/653 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P SD  A   E  +A+   +  +           +  + ++ A  ++     + +     
Sbjct: 182 PVSDEPAQAGEEAVAKPAEQDTSAPAAE---ETVSQDTSDDDADDSDDDDTDDGDDHAGT 238

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            + + S  +D          K   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLS
Sbjct: 239 EDSIESVADDDTEEEIRPKRKPRPRKYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLS 298

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPNT++G  ISRKITN  DR  LK+IA  ++VP G G+I+RTAGA RTK EI
Sbjct: 299 LAGRYCVLMPNTARGGGISRKITNAADRSKLKQIATEIDVPKGAGLIIRTAGAKRTKTEI 358

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRD+EYL RLW+ +R L L SVAP  +YEEG+LIKR+IRDLY ++I E+ V G++GYR A
Sbjct: 359 KRDYEYLQRLWEQIRALTLQSVAPAKIYEEGDLIKRSIRDLYNREIDEVHVEGDRGYRIA 418

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           KDFMK++MPS+A+ V+ Y DP P+F R  +E  L S+    V L S GY++I  TEALV+
Sbjct: 419 KDFMKMIMPSHAKNVKHYVDPMPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEALVA 478

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK
Sbjct: 479 IDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEK 538

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           K+K+ LK DRAR+QVG IS FGLLEMSRQR+R  ++E+TT+ C  C G G +RS  ++AL
Sbjct: 539 KIKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCHACHGTGLVRSDDNMAL 598

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           +ILR VEE   +  +  +++     +  YL+NQKR  +   EAR+G+++ +   + L   
Sbjct: 599 NILRQVEEEGTRRRSREVLLKVPVGIANYLMNQKREHVAMIEARYGMAVRIEGDLHLVSP 658

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP--------KSESLE 613
            F +EK       V               D+  E    +E              ++E+  
Sbjct: 659 DFTMEKFKTATRNVAEVLAPVVSVDTSLMDQIDEDALAEEDEDESTEDSGSTGSETENGA 718

Query: 614 DIQDNIVSEESTGVIRKRR----------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
           +   +       G    +           R ++      +  + G  +D     +   +S
Sbjct: 719 ENNSDSGENGDNGDDEGKPKKRRRRRRRSRSKKSNGEGENGSENGADNDSGKGDSDNGES 778

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                  +                E  D    P  T     S      +V +T
Sbjct: 779 GTDTPSDAATETTGEATTEEVAAAETDDAPAKPKRTRTRSRSRKPKADVVTET 831



 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/163 (50%), Positives = 98/163 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++E      ++E   D             S 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAEAEEEEDQPKSKRSRSRRSRSR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKK 163
                    S++    +  S    + +          ED P  
Sbjct: 121 TSSKAEKARSEDKTASADPSEIKGMETIDLGEDEIPDEDAPSS 163


>gi|167855429|ref|ZP_02478194.1| ribonuclease E [Haemophilus parasuis 29755]
 gi|167853423|gb|EDS24672.1| ribonuclease E [Haemophilus parasuis 29755]
          Length = 985

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 209/643 (32%), Positives = 332/643 (51%), Gaps = 17/643 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I+++I+    ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPQGYVFQGRPNIKDIIQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLD-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+TR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRATR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q G IS FGLLEMSRQR+  S+ E+++ VC  C+G G IR   S+ALSILR +EE  
Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  +      ++  YLLN+KR  I + E R  V + VV    +    F + +    
Sbjct: 431 IKENSVQVHAIVPVEIASYLLNEKRKAISDIEKRHDVQVIVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEESTGVIRK 630
           + +    + +    Q    + +I     +EAL+   K   ++E +  +            
Sbjct: 491 EIVPTLSYDLAKRYQEQDEENHIHHHHSEEALVSRNKPVITVESVLQSSELNLQPAPTPV 550

Query: 631 RRRR---------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              +         + +   A++  +          +N  +       +P+          
Sbjct: 551 EPAKPSLISRIIAKIKAMFASEEKEPEKKQGKGKARNQRERRQQRREKPNRNERQERKNT 610

Query: 682 GAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIVKKTRWWKRRK 723
                 E   V + P    E+ E     S P  ++ +  +RR+
Sbjct: 611 VVEATKEAEVVPVEPKKRREIVEEVAGVSVPQQREAKVAERRQ 653



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|269214749|ref|ZP_06158797.1| ribonuclease E [Neisseria lactamica ATCC 23970]
 gi|269209212|gb|EEZ75667.1| ribonuclease E [Neisseria lactamica ATCC 23970]
          Length = 659

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 208/651 (31%), Positives = 309/651 (47%), Gaps = 33/651 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 7   QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 67  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 186 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 246 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 425

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEEST-- 625
               +        ++    +       E          +               ++++  
Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545

Query: 626 --------------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                                   K   RR+ +R A            +  Q        
Sbjct: 546 DSFKAWLKRIFGGTSETPAAAEPPKTHFRRQPQRAAPHRQPPP---KPAPRQQARRRQGG 602

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                           G     +       P S    +  + S  P    T
Sbjct: 603 SARNGGFQRQSGRQSGGGTRNPQRQRQPPQPQSPKRTQRRSGSRKPRSPNT 653



 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG +
Sbjct: 1  MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLPF E+   Y+
Sbjct: 61 RHGFLPFKEVSRSYF 75


>gi|86139907|ref|ZP_01058472.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193]
 gi|85823325|gb|EAQ43535.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193]
          Length = 1046

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 266/612 (43%), Positives = 376/612 (61%), Gaps = 3/612 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P ++  ++ +    A+  S          D    +  +        +  +        + 
Sbjct: 250 PVAEEASVSEAPVAAEASSGDAVIQSAGSDDANADTDTAAGDDSGESEEEAKAPSDASAK 309

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           +  + S  ++          K   R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLS
Sbjct: 310 DESIESVADEDDSEDIRPARKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLS 369

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPNT++G  ISRKITN VDRK LK+IA  ++VP+G G+I+RTAGA RTK EI
Sbjct: 370 LAGRYCVLMPNTARGGGISRKITNAVDRKKLKDIATEIDVPSGAGLIVRTAGAKRTKAEI 429

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRD+EYL RLW+ +REL L SVAP  +YEEG+LIKR+IRDLY ++I E++V GE+GYR A
Sbjct: 430 KRDYEYLQRLWEQIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIA 489

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           KDFMK++MPS+A+ V+ Y++  P+F R  +E  L  +    V L S GY++I+ TEALV+
Sbjct: 490 KDFMKMIMPSHAKNVKNYQETLPLFARFQVESYLGGMFNPTVQLKSGGYIVIDTTEALVA 549

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSGR+T++  IE+TAL TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VE 
Sbjct: 550 VDVNSGRATKQSSIEETALNTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEN 609

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++K+ LK DRAR+QVG IS FGL+EMSRQR+R  ++E+TT+ C +C G G IRS  S+AL
Sbjct: 610 RMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCPHCHGTGLIRSDDSMAL 669

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           SILR +EE   +  +  ++V    D+  YL+NQKR  I + EAR+G+S+ +     L   
Sbjct: 670 SILRQIEEEGTRRRSREVLVRCPIDIANYLMNQKREHIAQIEARYGLSVRIEGDAHLVSP 729

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            F +EK      +V         +   S    ++    +     +P+ E+ + + D+  +
Sbjct: 730 DFTLEKFKTATRVVAVSAAPVVSADT-SLMAQVDADEAEADEDELPQDENSDAVADSGSN 788

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
            E     ++RRR  RRR+      ++    + S      + S       ++   +   E 
Sbjct: 789 GEDKPKRKRRRR--RRRKSGNGGENSESDRNGSEAGGGSEASETAAENAAEGEENPASET 846

Query: 682 GAHGFTENYDVS 693
           G    +E    S
Sbjct: 847 GEEAGSEEKKTS 858



 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 97/170 (57%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  D+         +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEESKPSRSRSRGRK 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
              +  A  +     E+   A              +   V  +      I
Sbjct: 121 GSRSKAAKVNSGDAVETKEVAPAKAEPAATPDVTENETPVVSEIAGMETI 170


>gi|74317582|ref|YP_315322.1| RNAse E [Thiobacillus denitrificans ATCC 25259]
 gi|74057077|gb|AAZ97517.1| ribonuclease E and G [Thiobacillus denitrificans ATCC 25259]
          Length = 873

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 199/529 (37%), Positives = 285/529 (53%), Gaps = 3/529 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
            A+    A+ D     D+ I +    +    I        E S+ +A  D          
Sbjct: 10  QAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYGCERHGFLP 69

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              E           + E +K  Q LLVQ+ K+ERGNKGAA+TTY+SLAGRY VLMP   
Sbjct: 70  -FKEIARSCLPNGGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRYVVLMPTNP 128

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  +SR+I        L++    L++P GM +I RTAG  RT  E + D  YL+ LW  
Sbjct: 129 RGGGVSRRIEGEER-NELRDTLAQLDIPEGMSLIARTAGIGRTAEEFQWDLNYLLSLWKA 187

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +   + +     L+Y+EG+L+ RAIRD +  DI EI++  E  Y +A+ FM  +MP+   
Sbjct: 188 IDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAHVMPANVN 247

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+ Y D  P+F R  IE Q++S    +V LPS G ++I+ TEALVSIDVNS R+T+   
Sbjct: 248 KVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSARATKGSD 307

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +E TA  TNLEAA+E+ARQ+RLRDL GLIV+DFIDME  K+ R VE +L+++L  DRARV
Sbjct: 308 VEQTAYNTNLEAADEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDALHHDRARV 367

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           Q G IS FGLLEMSRQR++ S+ E++   C  C G G+IR   S AL ILR ++E  ++ 
Sbjct: 368 QTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESSALHILRILQEEAMKE 427

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
               + V    DV  +LLN+KR  I   E+R  V++ ++  I +    + I +    +  
Sbjct: 428 NTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITRLRHDELN 487

Query: 575 VNTGHKVG-SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           V    +     +  P  +   +       L      +S+   Q  +   
Sbjct: 488 VAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPR 536



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 52/72 (72%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ +LD ES  K+Q KGNIY   VTRVEPSL+AAFVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEI 74
            RHGFLPF EI
Sbjct: 62 CERHGFLPFKEI 73


>gi|91787851|ref|YP_548803.1| ribonuclease G [Polaromonas sp. JS666]
 gi|91697076|gb|ABE43905.1| RNAse G [Polaromonas sp. JS666]
          Length = 501

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 152/565 (26%), Positives = 255/565 (45%), Gaps = 67/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   +LI+ S  +ETRV V+    V+EL  E   ++ + GN+YL KV RV P +Q+    
Sbjct: 1   MQQDILINWS-PQETRVAVVELGAVQELQVERTLERGLVGNVYLGKVARVLPGMQS---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I          DR A L                    D+    +   
Sbjct: 56  ---------AFIDIG--------LDRAAFL-----------------HVADLMSSINSRH 81

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E    A  +  +   + ++                             I++ +   Q +
Sbjct: 82  AETELQAAGTSTSASPATVAL--------------------------QPIEKQLFEGQAV 115

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ++K+  G KGA +T  +S+AGR  V +P  +      +      +   L++  + L 
Sbjct: 116 MVQVLKDPIGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPRQRED--LRQRVQALT 173

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G ILRT G   T  E+  D  YL + W  ++E +L      +++++ NL++R +R
Sbjct: 174 EDMGGGFILRTNGEDATDAELGEDIAYLRKTWSRIKEASLRLPPASVLHQDLNLLQRVLR 233

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +    I +   + +   K F    MP+  + ++ Y    PIF    I+  +     
Sbjct: 234 DVVVEGTQTIRIDSREQFDNLKAFAVEFMPATVQKLQLYSGERPIFDLYNIDEDIARALG 293

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY+II+QTEAL +IDVN+G        +DT  +TNLEA++ IARQLRLR+L 
Sbjct: 294 RRVDLKSGGYLIIDQTEALTTIDVNTGGFVGARNFDDTIFKTNLEASQAIARQLRLRNLG 353

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+++VDFIDM ++ +  +V  + ++ L +DR +  V   S  GLLEM+R+R R S+    
Sbjct: 354 GIVIVDFIDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEMTRKRTRESLAHQL 413

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C+ C G G +++  SV   ILR +     Q+      V     V+   L+++   + 
Sbjct: 414 CEPCSACMGKGVVKTARSVGYDILREILREARQFNPREFRVVASPKVIELFLDEESQHLA 473

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
                 G  I++     +A + + I
Sbjct: 474 GLSDFIGKPISLQAEAAMAQEQYDI 498


>gi|163736219|ref|ZP_02143638.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           BS107]
 gi|161390089|gb|EDQ14439.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           BS107]
          Length = 978

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 275/601 (45%), Positives = 369/601 (61%), Gaps = 3/601 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
            AQ  S    +     D          + A   + + +       + + ++ S  ++   
Sbjct: 204 EAQDASSESGEAEGAADTATTEADDAADDADADDSADKDAAADATAKDENIESVADEDDS 263

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                V K   R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT+
Sbjct: 264 EDIRPVRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTA 323

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKITN  DRK LK+IA  L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ 
Sbjct: 324 RGGGISRKITNAADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQ 383

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +REL L S+AP  +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+
Sbjct: 384 IRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAK 443

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+ Y+D  P+F R  +E  L ++    V L S GY++I  TEALV+IDVNSGR+T+E  
Sbjct: 444 NVKNYQDQLPLFARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGS 503

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+
Sbjct: 504 IEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARI 563

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS FGL+EMSRQR+R  ++E+TT  C +C G G IRS  S+ALSILR +EE   + 
Sbjct: 564 QVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRR 623

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
            +  ++V     +  YL+NQKR  I + E R+G+S+ +     L    F +EK      +
Sbjct: 624 RSREVLVRCPVSIANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFKTASRV 683

Query: 575 VNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           V            S     D +      DEA +    ++  E        E      RKR
Sbjct: 684 VPVATAPVVSVDTSIMDQVDADEASDEADEAEVEANDTDVAEVQAAGDEGEGDNKPKRKR 743

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           RRRRRR+    D  D+   +   +  +    S D   + +D        + A     + +
Sbjct: 744 RRRRRRKSSGADGDDSNNTAQGDANADDQKASDDAAADDADAQAEPAEGSDAKEAEGDGE 803

Query: 692 V 692
           V
Sbjct: 804 V 804



 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 92/143 (64%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  D+         +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRR 120

Query: 121 EEVAPIANFSQETEEESIISANN 143
                    S +  E   +S   
Sbjct: 121 GRTKAADVKSADVVETKDVSPET 143


>gi|219871374|ref|YP_002475749.1| ribonuclease E [Haemophilus parasuis SH0165]
 gi|219691578|gb|ACL32801.1| ribonuclease E [Haemophilus parasuis SH0165]
          Length = 969

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 209/643 (32%), Positives = 332/643 (51%), Gaps = 17/643 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I+++I+    ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPQGYVFQGRPNIKDIIQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLD-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+TR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRATR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q G IS FGLLEMSRQR+  S+ E+++ VC  C+G G IR   S+ALSILR +EE  
Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  +      ++  YLLN+KR  I + E R  V + VV    +    F + +    
Sbjct: 431 IKENSVQVHAIVPVEIASYLLNEKRKAISDIEKRHDVQVIVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEESTGVIRK 630
           + +    + +    Q    + +I     +EAL+   K   ++E +  +            
Sbjct: 491 EIVPTLSYDLVKRYQEQDEENHIHHHHSEEALVSRNKPVITVESVLQSSELNLQPAPTPV 550

Query: 631 RRRR---------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              +         + +   A++  +          +N  +       +P+          
Sbjct: 551 EPAKPSLISRIIAKIKAMFASEEKEPEKKQGKGKARNQRERRQQRREKPNRNERQERKNT 610

Query: 682 GAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIVKKTRWWKRRK 723
                 E   V + P    E+ E     S P  ++ +  +RR+
Sbjct: 611 VVEATKEAEVVPVEPKKRREIVEEVVGVSVPQQREAKVAERRQ 653



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|237808946|ref|YP_002893386.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187]
 gi|237501207|gb|ACQ93800.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187]
          Length = 950

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 220/663 (33%), Positives = 333/663 (50%), Gaps = 37/663 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
             +    A+ D     D+ I N    ++ A I        E S+ +A  D  +       
Sbjct: 10  QEEELRVALVDGQRIYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F  +  I+EVIK    ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPENYTFHGRPNIKEVIKEGLEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE   GLEVP+GMG+I+RTAG  +++ E++ D   L+
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMNGLEVPSGMGLIVRTAGVGKSQEELEWDLNILL 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + W+ ++  + N  AP L+++E N+I RAIRD   +DI EI++  E  +  AK  ++L+ 
Sbjct: 189 KHWNAIKTASSNRAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSETIFERAKQHIELVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVNRVKLYKSEIPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++
Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLE+SRQR+R S+ ES+T VC  C G G+IR   S+ALSILR +EE
Sbjct: 369 DRARIQLGRISRFGLLELSRQRLRPSLNESSTHVCPRCSGQGFIRDNESLALSILRLIEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             L+     +I     DV  YLLN+KR  ++  E R  V + ++    L    F + +  
Sbjct: 429 EALKDNTEQVIAQVPVDVAAYLLNEKRQAVLTLEQRHKVQLLIIPNTRLETPHFEVSRFR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQD----------EALLPIPKSESLEDIQDNI 619
             +      +++ +++    Y    + +                +P P   +        
Sbjct: 489 SGEESDALSYELKTEAPVEEYQPKPQQIIAPAEQPALQGFVAPSVPAPTPVNTPTPVVAK 548

Query: 620 VSEE------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSS--IQNV 659
            + E                   T V  ++   + R +P    +        +S   +N 
Sbjct: 549 PAAEGLLSRLFGFIGALFKGSAETQVAEEKPPVKERPQPRRRDNRNNNRKRNTSYAARNR 608

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            +D               + +              P V    +E  + +  P  +  +  
Sbjct: 609 EEDVAGTAAPEEKTQTTPVRQPRRPRQDRAERTDRPSVRDNNVEKESPAVKPE-RTPKER 667

Query: 720 KRR 722
           K R
Sbjct: 668 KPR 670



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E+   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQEEELRVALVDGQRIYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|260460709|ref|ZP_05808959.1| ribonuclease, Rne/Rng family [Mesorhizobium opportunistum WSM2075]
 gi|259033286|gb|EEW34547.1| ribonuclease, Rne/Rng family [Mesorhizobium opportunistum WSM2075]
          Length = 1002

 Score =  330 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 296/608 (48%), Positives = 386/608 (63%), Gaps = 2/608 (0%)

Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160
            A  +     +     D   E  +   +     E  S    ++++ S   +       + 
Sbjct: 209 AASVEADVISEPVSQADQGSEATSADNDRGMLEEVSSSHPDDHEIESVGAEDALEEVRNR 268

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
            K  +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT++G  IS
Sbjct: 269 RKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGIS 328

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           RKIT+ VDRK LKE+   LEVP GMGVILRTAG SRTK EIKRD+EYLMRLW+NVR L L
Sbjct: 329 RKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTKAEIKRDYEYLMRLWENVRNLTL 388

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            S AP LVYEEG+LIKR++RDLY KDI EI+VSG++GYREAKDFM++LMPS+A++V+ + 
Sbjct: 389 QSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGDEGYREAKDFMRMLMPSHAKVVQPFR 448

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
           D  PIF R+GIE QLD + Q +VTL S GY+IINQTEALV+IDVNSGRST+EH IEDTAL
Sbjct: 449 DTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEDTAL 508

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
            TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE +NNRSVEK+LK+ LK DRAR+QVG IS
Sbjct: 509 HTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRSVEKRLKDHLKNDRARIQVGRIS 568

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
           +FGL+EMSRQRIR+SVLEST K C +C G G++RS SSVAL ++R++EE+LL+ +  +I 
Sbjct: 569 HFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVALMVVRAIEEFLLKDSRSHIT 628

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN--TG 578
           V T +   LY+LN KR T+VE E+RFG++I +     +  + + I +G+  +        
Sbjct: 629 VRTPAATALYVLNHKRGTLVELESRFGLTITIEADDAVGAQHYAIFRGALAEKPEGFVEL 688

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
             + +  +    +  +     +EA     +    +  Q              R    R  
Sbjct: 689 RSLPAYVEPEEPEDEVVIEEDEEAPAQAEQPRHAQPSQHQQPRSGEPRSGEPRSGEPRSG 748

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            P T    +G   +    +           +           +       ++  S+    
Sbjct: 749 EPRTGEPRSGEDGEGRDRKRRKRRRRRGGKDRDREHGAPTDGSSISAPAGDFAESVHEAD 808

Query: 699 TPEMESSN 706
             + E+ +
Sbjct: 809 NDDTETDD 816



 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 94/157 (59%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDASH EETRVVV+R NR+EE DFES+ KKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+       D E    +              
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEENEDSEGEDRQSRDRGRRGR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157
                  +  +   +     +     +  E  + G  
Sbjct: 121 RRGGKSRDRGEHPRDAGGAESGEANEAAGEARENGDN 157


>gi|329120430|ref|ZP_08249096.1| ribonuclease E [Neisseria bacilliformis ATCC BAA-1200]
 gi|327462114|gb|EGF08442.1| ribonuclease E [Neisseria bacilliformis ATCC BAA-1200]
          Length = 954

 Score =  330 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 206/659 (31%), Positives = 317/659 (48%), Gaps = 34/659 (5%)

Query: 80  QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
           ++P +  + +L  +  A+    A+ D     D+ I      +    I        E S+ 
Sbjct: 33  RLPGAIMKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLE 92

Query: 140 SANNDVVSNVE---DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
           +   D  ++       K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+
Sbjct: 93  ACFVDYGTDRHGFLPFKEVSRAYFQDYEGGKVRIQDVLKEGMQVIVQVEKDERGNKGAAL 152

Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
           TT++SLAGRY VLMPN  +G  +SR+I     ++ LK+    L VP GM +I RTAG  R
Sbjct: 153 TTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQE-LKDAMAELNVPRGMSLIARTAGIGR 211

Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316
           +  E++ DF+YL++LW  + E       P+L++ E +L+ RAIRD +  DI EI+V   +
Sbjct: 212 SVEELQWDFDYLLKLWQAIEEAGNAHQEPYLLFMESSLLIRAIRDYFRPDIGEILVDNAE 271

Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
            Y E  +FM  +MP+    ++ Y+D  P+F R  IE Q++S     V LPS G ++I+ T
Sbjct: 272 VYEEISEFMSYVMPANTGRLKLYQDHTPLFSRFQIEHQIESAFSRSVNLPSGGAIVIDHT 331

Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           EALVSIDVNS R+TR   IE+TA +TN+EAAEE+ARQ+RLRDL GLIV+DFIDME  K+ 
Sbjct: 332 EALVSIDVNSARATRGADIEETAFKTNMEAAEEVARQMRLRDLGGLIVIDFIDMENPKHQ 391

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           R VE  L+++LKKDRARVQ   +S FGLLE+SRQR++ ++ ES+   C  C G G IR  
Sbjct: 392 REVENTLRDALKKDRARVQTAKLSRFGLLELSRQRLKPALGESSHTACPRCAGTGVIRGI 451

Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
            S AL +LR ++E  ++     +      DV  +LLN+KRA +   E R  V++ ++  I
Sbjct: 452 ESTALHVLRIIQEEAIKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVMLIPNI 511

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESL 612
            L +  + I +        +        ++  + D       E V        +   +  
Sbjct: 512 HLENPHYEISRIRTDDVEEDAPPSYKQVAEPEADDTARPFGGERVKAARPEPAVKGVKHT 571

Query: 613 EDIQ--------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
           +                                   +         RR + +    +   
Sbjct: 572 QPAPVFAEPQPESWWDKFKAWFKSLFGGAQQTEPEPQPEPRRNPELRRGQAQNRRRNAGS 631

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
                  +  Q   + + +         N N           N +   P  +  +   +
Sbjct: 632 GRNPRPNADAQAQDETAGEDSERARRNGNGNGNSGERRNRRPNNERQTPDAAPVQAVET 690



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 40  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYG 99

Query: 63  GNRHGFLPFLEIHPDYYQ 80
            +RHGFLPF E+   Y+Q
Sbjct: 100 TDRHGFLPFKEVSRAYFQ 117


>gi|227326843|ref|ZP_03830867.1| ribonuclease E [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 1108

 Score =  330 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 206/678 (30%), Positives = 316/678 (46%), Gaps = 58/678 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++S+++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 428 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMQTPHYSVVRVR 487

Query: 570 PVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPI---------------------- 606
             +      + +           ++ + + + +   P                       
Sbjct: 488 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETAPSIAKAAP 547

Query: 607 ---------------------------PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
                                        +    D  D+  +EE      +R  RR  RR
Sbjct: 548 AAAKPAEVAQPGLVSRLFSALKSVFASEPAAKAADSVDDKKAEEEKSTEGQRPERRNSRR 607

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
              +  D G   +  + +   D   +       +T+    EN     +E      P    
Sbjct: 608 QGNNRRDRGSRDNRDNREQRDDQRRNKRQNEDAVTDTRAAENAEKSSSEEQPRREPRAER 667

Query: 700 PEMESSNSSSDPIVKKTR 717
                 +    P   K +
Sbjct: 668 QRRRQDDRRQAPAEAKAQ 685



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|254252866|ref|ZP_04946184.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
 gi|124895475|gb|EAY69355.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
          Length = 1022

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 204/613 (33%), Positives = 310/613 (50%), Gaps = 12/613 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 83  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 142

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 143 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 202

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 203 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 261

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 262 RAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 321

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 322 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 381

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 382 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 441

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 442 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 501

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 502 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 561

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    PK E+            S    R 
Sbjct: 562 DDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSAAPQRP 621

Query: 631 RRRRRRRRRPATDHHDAGVVSDVS-----SIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                            G +  ++     S       +     +             A  
Sbjct: 622 VEPVAAPAPAPVAAASGGFIGWLNGLFGMSPAPAPAPAAPAPAKEQASRPARERAEKAEQ 681

Query: 686 FTENYDVSIPPVS 698
             E    S P ++
Sbjct: 682 RGETRRRSQPAIA 694



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 73  KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 132

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 133 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 181


>gi|126737545|ref|ZP_01753275.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6]
 gi|126720938|gb|EBA17642.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6]
          Length = 1085

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 258/599 (43%), Positives = 357/599 (59%), Gaps = 2/599 (0%)

Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167
           +       +  +  + +     S + +     S +  + S  ++          K   R+
Sbjct: 290 SSDSEGDDSATASADESEEEETSAKGKSADASSKDESIESVADEDDSEDIRPPRKPRARR 349

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
           Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  
Sbjct: 350 YKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVA 409

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           DRK LK+IA  L+VP G G+I+RTAGA RTK EIKRD+EYL R+W+ +REL L S+AP  
Sbjct: 410 DRKKLKDIATELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAK 469

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ VR Y+D  P+F 
Sbjct: 470 IYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVRHYQDALPLFA 529

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
           R  +E  L  +    V L S GY++I  TEALV+IDVNSGR+T++  IE+TAL TNLEAA
Sbjct: 530 RFQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKQGSIEETALNTNLEAA 589

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           EE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+QVG IS FGL+EM
Sbjct: 590 EEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEM 649

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           SRQR+R  ++E+TT+ CT+C G G IRS  S+ALSILR +EE   +  +  ++V     +
Sbjct: 650 SRQRLRPGMIEATTQPCTHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREVLVRCPVAI 709

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
             YL+NQKR  I + EAR+G+S+ +   + L    F IEK      +V            
Sbjct: 710 ANYLMNQKREHIAQIEARYGLSVRIEGDMHLVSPDFTIEKFKTASRIVPVAEAPVVSVDT 769

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-- 645
              D+      + E         + E   ++    +     R++           +    
Sbjct: 770 SIMDQVDAEESEAEEAAAETPVATEESEGEDKPKRKRRRRRRRKSGNGAEDGADGEDQAA 829

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             G      +  +   ++ +   +P   +       G     +  +      +    E 
Sbjct: 830 QEGAAESDDADASAEGETSEEDAKPEKKSRRRRTRGGRGRSKKADNADTEEGAEKPAEE 888



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 86/110 (78%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  D+    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDDEEDAK 110


>gi|188583163|ref|YP_001926608.1| ribonuclease, Rne/Rng family [Methylobacterium populi BJ001]
 gi|179346661|gb|ACB82073.1| ribonuclease, Rne/Rng family [Methylobacterium populi BJ001]
          Length = 1065

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 289/559 (51%), Positives = 377/559 (67%), Gaps = 4/559 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 348 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 407

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKE+   L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL 
Sbjct: 408 SRKITSAADRKRLKEVVADLDVPEGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 467

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE  YREAKDFM++LMP  +++V+ Y
Sbjct: 468 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 527

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            DP PIF R G+E QLD++  T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 528 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 587

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNLEAAEE+ARQ+RLRDLAGL+V+DFIDMEEK+NNR+VEK+L E+LK DRAR+QVG I
Sbjct: 588 LKTNLEAAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRI 647

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQRIR+ VLES++  C +C G+G++R+ SSVAL ILRS+EE LL+ ++HN+
Sbjct: 648 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEALLKSSSHNL 707

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578
           ++ T ++V LY+LNQKRA + + E RF V+I +     L A   F +++G P    V   
Sbjct: 708 VLRTRTEVALYILNQKRAHLYDLEQRFSVAITISADERLAATAAFQLDRGEPAVKHVGPA 767

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
             V + + +P Y+      ++DE L         E+ + +    E +    +      R 
Sbjct: 768 TGVRAVAISPVYE---AEEFEDEVLESEDDLRDGEEARADEPRGERSADEAEAEGGEGRA 824

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
             + +                  +                  +     +E+ D +    +
Sbjct: 825 EGSEEGGGRRRRRRRRRGGRSSGEEARAQDGQEPENESGNGSDAESDGSEDGDEAPESEA 884

Query: 699 TPEMESSNSSSDPIVKKTR 717
             E+  + +  D  V +  
Sbjct: 885 ADEVAGAGAERDETVSEAG 903



 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/143 (47%), Positives = 91/143 (63%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA+H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y
Sbjct: 3   NNKMLIDATHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F EIHPDYYQIP +DR AL++     + +     +             +  
Sbjct: 63  GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122

Query: 122 EVAPIANFSQETEEESIISANND 144
             +   +  +  E  +   + ND
Sbjct: 123 RGSRHDDTVKSQEAIAETVSEND 145


>gi|332975051|gb|EGK11957.1| ribonuclease E [Kingella kingae ATCC 23330]
          Length = 930

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 204/583 (34%), Positives = 299/583 (51%), Gaps = 21/583 (3%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  S          +  IQ+V+K    L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLMPN
Sbjct: 71  KEISRAYFRDYEGGKARIQDVLKEGTQLIVQVEKDERGNKGAALTTYISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    L+VP GM +I RTAG  R+  E+  DF YL++LW
Sbjct: 131 NPRGGGVSRRIEGEDRAE-LKEAMAQLDVPNGMSIIARTAGIGRSAEELNWDFNYLLQLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + + A     P+L++ E +L+ RAIRD Y  DISEI+V   + Y +  +FM  +MP+ 
Sbjct: 190 RAIEDAAAAHKQPYLLFMESSLVIRAIRDYYRPDISEILVDNPEVYEQVSEFMSYVMPNN 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ YED  P+F R  IE Q+++     V LPS G ++I+ TEALVSIDVNS RSTR 
Sbjct: 250 LSRLKLYEDHTPLFSRLQIEQQIETAFARSVNLPSGGAIVIDHTEALVSIDVNSARSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE  L+++LKKDRA
Sbjct: 310 SDIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQRDVETTLRDALKKDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IRS  S AL +LR +++  +
Sbjct: 370 RVQMGKLSRFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHVLRLIQDAAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      DV  +LLN+KRA +   E R  VS+ ++    L +  + I +     
Sbjct: 430 KENTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVILIPNPNLENPHYEISRIKVDD 489

Query: 573 ALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST------ 625
              N             S          ++A  P P    L+         E+       
Sbjct: 490 VDENADPSYKRVAEPEKSDSVPFANKKGEKAARPEPAVRGLKHATPAPTVNENKSWWSSF 549

Query: 626 -------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                            +++     ++      +              + +         
Sbjct: 550 KGWLKRLFTGSDSKPETEKKAVSGSKKDGNRKRNNPNRRARPKSTRDENAAPSENGNQRT 609

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               N  +  A         + P +    +E S   ++P  +K
Sbjct: 610 NRKANNRQRDAEKERPVDTNATPAMPEQRVEKSRPKNEPNPRK 652



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   VTR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVVTRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF EI   Y++
Sbjct: 62 TDRHGFLPFKEISRAYFR 79


>gi|99081300|ref|YP_613454.1| RNAse E [Ruegeria sp. TM1040]
 gi|99037580|gb|ABF64192.1| RNAse E [Ruegeria sp. TM1040]
          Length = 976

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 272/602 (45%), Positives = 372/602 (61%), Gaps = 7/602 (1%)

Query: 94  NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153
             A         + +        D   +E         +T        ++ + S  +D  
Sbjct: 210 EPATDGEAETVAEDSAAIEEADADDDTDEGGTEDAPEAKTGGADAADKDDSIESVADDDD 269

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
                   K   ++Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT
Sbjct: 270 QEDIRPPRKPRPKRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNT 329

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           ++G  ISRKITN  DRK LK+IA  L+VP G G+I+RTAGA RTK EIKRD+EYL R+W+
Sbjct: 330 ARGGGISRKITNAADRKKLKDIATELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRMWE 389

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +REL L S+AP  +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A
Sbjct: 390 QIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHA 449

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
           + V+ Y+D  P+F R  +E  L  +    V L S GY++I  TEALV+IDVNSGR+T+E 
Sbjct: 450 KNVKNYQDQLPLFARYQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEA 509

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TA++TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEKKLK+ LK DRAR
Sbjct: 510 SIEETAVKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLKDKLKTDRAR 569

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           +QVG IS FGLLEMSRQR+R  ++E+TT  C +C G G IRS  S+ALSILR +EE   +
Sbjct: 570 IQVGRISGFGLLEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTR 629

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
             +  ++V    D+  YL+NQKR  I + EAR+G+S+ +   + L    F +EK      
Sbjct: 630 RRSREVLVKCPVDIANYLMNQKREHIAQIEARYGLSVRIEGDVTLVSPDFSLEKFKTASR 689

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +           A   D+        +A+  + ++           ++E+ G  + +R+
Sbjct: 690 AIPAVTTPVVSVDASIMDQV-------DAIEEVAETPEEAPAPQAPEADETEGEAKPKRK 742

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           RRRRRR  + + + G  +D  + +    D+ D   +  D  + +  E       E    +
Sbjct: 743 RRRRRRKKSGNGENGQDADAQASEANASDASDAATDSQDAESDSKTETAPDAAGEGDGEA 802

Query: 694 IP 695
            P
Sbjct: 803 EP 804



 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/156 (49%), Positives = 97/156 (62%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  ++         +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDDEPKPKRRSRSRS 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156
           +  A  A  +   E + + +   ++           
Sbjct: 121 KTRAEKAKTADAVETKEVATPEGEISGMETIDLSDD 156


>gi|167586608|ref|ZP_02378996.1| ribonuclease, Rne/Rng family protein [Burkholderia ubonensis Bu]
          Length = 594

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 197/540 (36%), Positives = 297/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGRSGEPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    PK E+            S    R 
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSPAPQRP 550



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|302878468|ref|YP_003847032.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2]
 gi|302581257|gb|ADL55268.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2]
          Length = 834

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 206/586 (35%), Positives = 300/586 (51%), Gaps = 26/586 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  +P+        +  I+E ++  Q LLVQI K+ERGNKGAA+TTY+SLAGRY VLMPN
Sbjct: 71  KEVAPQFHQPGCGPRPSIKEALREGQELLVQIEKDERGNKGAALTTYISLAGRYIVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
              G  +SR+I      + L+E+   LEVP GM +I RTAG  R + E++ D  YL +LW
Sbjct: 131 NPNGGGVSRRIEGDERAE-LREVLSNLEVPDGMSIIARTAGIGRNEEELQWDLNYLNQLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + + A +  AP L+Y E +L+ RAIRD +  +I EI++  ++ Y++A  FM  +MP  
Sbjct: 190 TAIADAAKSEKAPSLIYLESSLVVRAIRDYFNPEIGEILIDTDEVYQQAHAFMSTVMPDN 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +++Y D  P+F R  IE Q++S H  EV LPS G ++I+ TEAL +ID+NS R+T+ 
Sbjct: 250 VNRIKRYVDDVPLFSRFQIEHQIESAHSREVRLPSGGAIVIDHTEALTAIDINSARATKG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE TA  TNLEAAEEIARQ+RLRDL GLIV+DFIDME  KN R VE +L++SL+ DRA
Sbjct: 310 SDIEATAFNTNLEAAEEIARQMRLRDLGGLIVIDFIDMENSKNQRDVENRLRDSLRFDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ   IS FGLLE+SRQR++ S+ ES    C  C G G+IR   S AL ILR ++E  +
Sbjct: 370 RVQTAKISRFGLLELSRQRLQPSLGESNYITCPRCSGIGHIRGTESSALHILRIIQEEAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           + ++  I      DV  +LLN+KR  +   E+R  V I ++    L    + I +    +
Sbjct: 430 KDSSAAIHAQVPVDVATFLLNEKRGDLHRIESRLRVPITLIPNPHLETPNYTINRLRQDE 489

Query: 573 ---------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD------ 617
                     LV    +  +D +     +    V     + P P +    +         
Sbjct: 490 LTGDAQPSYTLVEKPEENKADQEPQKGVRVQAAVKGITPVAPAPTAPVKTEPAATPGLLS 549

Query: 618 ----------NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
                         E+ T  + +  R R  R   ++  D    ++    ++   +     
Sbjct: 550 QIGGWFKSLVAAEPEKETPAVSRPPRGRNDRPERSERGDRPDRNEGRKRRDRNPERNAAQ 609

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                               +      P       E   +   P++
Sbjct: 610 AIEKSAEKSTEKSTVTAEVRQPRPPRPPRPPKVANEQRPTEEKPVI 655



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD E   K+Q K NIY A +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQPEELRVAIVDGQKLIDLDIEIAGKEQRKSNIYQAVITRIEPSLEACFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           GNRHGFLPF E+ P ++Q     R ++ +     Q     +  D 
Sbjct: 62  GNRHGFLPFKEVAPQFHQPGCGPRPSIKEALREGQELLVQIEKDE 106


>gi|149176937|ref|ZP_01855546.1| ribonuclease E [Planctomyces maris DSM 8797]
 gi|148844192|gb|EDL58546.1| ribonuclease E [Planctomyces maris DSM 8797]
          Length = 519

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 160/562 (28%), Positives = 262/562 (46%), Gaps = 58/562 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +ML++    EE+R+ ++ D  +EEL  E    + + GNIY  KV  +EPS+QAAFVD
Sbjct: 1   MKKEMLVNVLQPEESRIAIVEDGILEELYVERNSLENLVGNIYKGKVVNIEPSIQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G  R+GFL   +I   YY+                         +   G         +
Sbjct: 61  FGVGRNGFLHVSDIEHQYYK------------------HLTDGDGNGKPGRGRNQKGRRV 102

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E +       +   +        V+      KG +         R   I   ++   I 
Sbjct: 103 NERSVANKPPIQEILKRGSEVLVQVIKEGLGNKGPTLSTYISIPGRYLVIMPGLQRVGIS 162

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                ++ R +    +T      G              I R         +LK     L 
Sbjct: 163 RKIADEDVRKDLRTILTQLAPPPGL-----------GFIVRTAGIDRTADDLKRDLNYL- 210

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                       +RLW  +         P  +Y E +++ R IR
Sbjct: 211 ----------------------------LRLWGTIVGRIKKLPTPVEIYSESDMMIRTIR 242

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+Y  +I  + +     Y+ A+DFMK+++P +   V+ Y    PIF+ S ++ ++ S+  
Sbjct: 243 DIYNSEIDTLYIDEPTAYQRARDFMKVVLPKHVNRVKHYTGNDPIFYNSKLDDEICSIQN 302

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V +   G ++I+QTEALV+IDVNSG    +   E TA + N++AAEEI+RQ+RLRDL 
Sbjct: 303 RHVPMKGGGSIVIDQTEALVAIDVNSGNYRADDNAEKTAFKVNMKAAEEISRQIRLRDLG 362

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV+DFIDM E+K+ RSVE++L+E +K+DRAR +V  IS FGL+EM+RQRIR S+  S 
Sbjct: 363 GVIVIDFIDMREEKHRRSVERRLRELVKRDRARTKVLRISPFGLIEMTRQRIRPSLRRSM 422

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C+G G +++  S+A+ ++R++   + +     ++++ H +V  YL N++R  I 
Sbjct: 423 YEDCPSCRGTGQVKTAESMAIEVMRTLMTTVNKKNISRLVLNVHENVANYLNNKRRKDIT 482

Query: 541 EYEARFGVSINVVIGIELADKL 562
           + E     SI +    ++  + 
Sbjct: 483 QLEETAQTSIIINARTDVEPEH 504


>gi|198283981|ref|YP_002220302.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665963|ref|YP_002426618.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248502|gb|ACH84095.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518176|gb|ACK78762.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 782

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 199/542 (36%), Positives = 304/542 (56%), Gaps = 5/542 (0%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DV 152
           A+    A+ D     D+ I   +  ++ + I        E S+ +A  D  +       +
Sbjct: 11  AEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYGAERHGFLPL 70

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  + E   ++ + +  IQ++++  Q ++VQ+ KEER +KGAA+TT++SLAGRY VLMPN
Sbjct: 71  KEIAREYFQQQEQGRKRIQDLVREGQEIIVQVDKEERSSKGAALTTFVSLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   +SR+I        +++  + L++P  MGVI RTAG  +    ++RD EYL ++W
Sbjct: 131 NPRAGGVSRRIEGEDRT-QIRQHLQLLDIPENMGVIARTAGIGQELEALQRDLEYLKQIW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + + A    AP L+Y+EGN++ RA+RD + +DI E+++  E  Y  A  FM  +MP  
Sbjct: 190 QAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAAVQFMGSMMPKM 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y++  P+F R  IE Q++S    EV L S G ++I+ TEALV++DVNSGR+T+ 
Sbjct: 250 VHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAVDVNSGRATKG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             I +TA QTNLEAAEEIARQ+RLRDL GLIVVDFIDME  K+ R VE KLKE+LK DRA
Sbjct: 310 QDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVENKLKEALKLDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+EMSRQR+ +S+ E++++ C  C G G IR   + ++ +LR + E  +
Sbjct: 370 RVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATSMHVLRLLYEECM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +  A  +      DV +YLLN+KR  I+E EA+    I V+   E+    + I++   V+
Sbjct: 430 KTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTDTRILVIPTPEMVTPHYQIQRTR-VE 488

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                              +      +  AL P+      E +         +    K  
Sbjct: 489 GGSGRTAPAPGGEGNALPARPSRPTNESAALSPLTAPPPPEVLPPLRTPPAPSSPKAKVP 548

Query: 633 RR 634
            +
Sbjct: 549 AK 550



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/108 (40%), Positives = 63/108 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+H EE RV ++   ++ +LD E  +++Q K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2   KRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
             RHGFLP  EI  +Y+Q     R+ +       Q     V  +    
Sbjct: 62  AERHGFLPLKEIAREYFQQQEQGRKRIQDLVREGQEIIVQVDKEERSS 109


>gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas arsenicoxydans]
 gi|133739181|emb|CAL62230.1| Ribonuclease E (RNase E) [Herminiimonas arsenicoxydans]
          Length = 973

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 194/550 (35%), Positives = 297/550 (54%), Gaps = 10/550 (1%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   I++ ++  Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN  +G  +SR++  
Sbjct: 85  RNASIKDALREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    L++P GM VI RTAG  R   E++ D  YLM+LW  +     +    
Sbjct: 145 EDRQE-LRETMDKLDLPQGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSGAGA 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y+E +L+ RAIRD +  DI EI++  +  Y +A+ FM  +MP     V++Y D  P+
Sbjct: 204 FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQQFMSHVMPDMVHRVKRYRDDVPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++ +   V LPS G ++I+ TEALVS+DVNS R+TR   IE TA  TN E
Sbjct: 264 FSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRGSDIETTAFHTNCE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQLRLRDL GLIV+DFIDME  KN R VE +LK++L  DRARVQ+G IS FGL+
Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETRLKDALHYDRARVQMGKISRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  ++  + +I V    
Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENSASIHVQAPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV  +LLN+KR  I++ E R  VS+ ++    L    + +E+       +       + +
Sbjct: 444 DVAAFLLNEKRGEILKIETRHRVSVILIPNKHLETPHYKLERIKHDDPRLEEVQASYAMT 503

Query: 586 QAPSYDKNIE-----CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR--- 637
           +    D + +          +  +    +     + +    E +T      +   ++   
Sbjct: 504 EQADTDISYDKRLKVEAKPRQEAMVKGITPDHAPVVERKPVEMATAAAPAEKGFFQKLMA 563

Query: 638 -RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
               + +   A     V   +N  +   +      +  N +    G     E  + +   
Sbjct: 564 FFSGSPEQPKAAPAQAVQEDKNQRNQRGERKDGGRNQRNRSRGGRGGRERGEEREETATK 623

Query: 697 VSTPEMESSN 706
            +    E+ N
Sbjct: 624 PAPAASETQN 633



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q K NIY   +TR+EPSL+A FV YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A +K++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGN 110


>gi|15676123|ref|NP_273254.1| ribonuclease E [Neisseria meningitidis MC58]
 gi|7225417|gb|AAF40653.1| ribonuclease E [Neisseria meningitidis MC58]
          Length = 919

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|209517245|ref|ZP_03266090.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160]
 gi|209502381|gb|EEA02392.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160]
          Length = 599

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 199/539 (36%), Positives = 299/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +K  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPDGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGTSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KRA I + E+RF V++ ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +   A    PK E+            S  V  
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEKPAPSAPVRP 549



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGN 110


>gi|170738741|ref|YP_001767396.1| ribonuclease [Methylobacterium sp. 4-46]
 gi|168193015|gb|ACA14962.1| ribonuclease, Rne/Rng family [Methylobacterium sp. 4-46]
          Length = 1092

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 304/545 (55%), Positives = 379/545 (69%), Gaps = 1/545 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+  +R Y IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 397 RPRAPRRHYKIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGI 456

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKEIA  LEVP GMGVILRTAGASRTK EIKRDFEYLMRLW++VREL 
Sbjct: 457 SRKITSAADRKRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMRLWESVRELT 516

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L+S AP LVYEEG+LIKRAIRDLY KDI E++V+G+  YREAKDFM++LMPS +++V+ Y
Sbjct: 517 LSSSAPALVYEEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRMLMPSQSKVVKPY 576

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            DP P+F R G+E QLD++    V L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 577 RDPTPLFARYGVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 636

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+KL E LK DRAR+QVG I
Sbjct: 637 LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQVGRI 696

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQRIR+ VLES++  C +C G+G++R+ SSVAL ILR++EE L++ ++HN+
Sbjct: 697 SPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSSSHNL 756

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578
           I+ T +DV LY+LNQKR  + E E RFGVSI V     L     F++++G P Q      
Sbjct: 757 ILRTRTDVALYILNQKRGHLRELETRFGVSITVSADERLPPTSAFHLDRGEPAQPPEPRL 816

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                 ++A       E   +++  L   +  + E  +      E  G  R+RRRRRRRR
Sbjct: 817 PVTSIRAEAVQPPPLEEEDEEEDETLEQAEGAAEEAGEAGGAGTEDEGGGRRRRRRRRRR 876

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
                          ++ Q  + D         +          A G   + +    PV+
Sbjct: 877 GRGEGRPGEIEGETETAGQEAVGDEAAGDEAAGEEAAGEETGLPAAGPEGDEEPGEGPVT 936

Query: 699 TPEME 703
            P  E
Sbjct: 937 IPITE 941



 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/154 (49%), Positives = 96/154 (62%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASH EETRVV ++ ++VEE DFE+ +++Q++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E   A+ + E   +               
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALLEEDARAEREQEERPERNERASDDRRRRRRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
              A  A+   +    +           VE  + 
Sbjct: 121 GRRAEAASAKADPVVSAPAEGLEVEGLEVEGGED 154


>gi|325135122|gb|EGC57749.1| ribonuclease E [Neisseria meningitidis M13399]
          Length = 916

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 7   QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 67  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 246 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 425

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 546 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 605

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 606 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 665

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 666 MQTGKRRR 673



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 53/76 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG +
Sbjct: 1  MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          RHGFLPF E+   Y+Q
Sbjct: 61 RHGFLPFKEVSRSYFQ 76


>gi|161870864|ref|YP_001600038.1| ribonuclease E [Neisseria meningitidis 053442]
 gi|161596417|gb|ABX74077.1| ribonuclease E [Neisseria meningitidis 053442]
          Length = 919

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 609 AGKTARQEARADTAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|89055030|ref|YP_510481.1| ribonuclease E [Jannaschia sp. CCS1]
 gi|88864579|gb|ABD55456.1| RNAse E [Jannaschia sp. CCS1]
          Length = 890

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 249/598 (41%), Positives = 347/598 (58%), Gaps = 17/598 (2%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           +    +  + ++     +   +T+ ++  S +++     +D        V K   ++Y I
Sbjct: 175 EEPEGDADTTDDADADTDADTDTDADTDDSGDDNSEVVADDDDVEEIRPVRKPRPKKYKI 234

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
           QEV+K RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK
Sbjct: 235 QEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRK 294

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
            LK+IA  L+VP G G+I+RTAG+ RTK+EIKRD+EYL R W+ +REL L S+AP  +Y+
Sbjct: 295 KLKDIATALDVPQGAGLIVRTAGSQRTKVEIKRDYEYLQRQWEQIRELTLKSIAPAPIYQ 354

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           EG+LI R IRDLY +DI E+IV GE GYR AKDFMK++MPS+A+ V+++    P+F +  
Sbjct: 355 EGDLIHRTIRDLYNRDIGEVIVEGEAGYRHAKDFMKMIMPSHAKKVKRHGGGVPLFAKYK 414

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           +E  L  +    V L S GY++IN TEALV+IDVNSGRST+E  IEDTA +TNLEAAEE+
Sbjct: 415 VESYLSDMFNPTVQLKSGGYIVINITEALVAIDVNSGRSTKEGSIEDTATKTNLEAAEEV 474

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQ+RLRDLAGLIV+DFIDM+E++NN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQ
Sbjct: 475 ARQVRLRDLAGLIVIDFIDMDERRNNNAVEKRIKDKLKTDRARIQVGRISTFGLMEMSRQ 534

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R+R  +LE+TT+ C +C G G +RS  S+ALSILR +EE   +  A  +++     +V +
Sbjct: 535 RLRPGMLEATTQACHHCHGTGLVRSDDSLALSILRQLEEEGTRGRAREVLLTAPVGIVNF 594

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS------- 583
           L+N KR  +   EAR G++I +     L    + IEK       +     V S       
Sbjct: 595 LINFKRDYLDAIEARSGMAIRIEADASLVVPDYKIEKFKTATRKITAVAPVVSMDAGLMD 654

Query: 584 ----------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                        A   D+  E    ++      +       +        TG   +   
Sbjct: 655 DIDEDAGDDVVEDADQVDEAAEASEDEQPRKKRRRRRGGRGRRRTSDENGETGDSAEDGS 714

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
                       D    +   +     ++                        T+  +
Sbjct: 715 AAAAVPEEAAGADPSTDTPPEASPEGEEEQPKKRRRSRRGGRGRKSSEAQAETTDEGN 772



 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/139 (50%), Positives = 85/139 (61%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA  MLIDA+H EETRVVV    +V+E DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKTMLIDATHAEETRVVVADGTKVDEFDFESLNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ALL E            ++ +            
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALLAEERAYAEQQAREEEEESSKPKRRRKRRRG 120

Query: 121 EEVAPIANFSQETEEESII 139
            +       +    + +  
Sbjct: 121 GDTKAEETGNDAVAKGTPN 139


>gi|254805760|ref|YP_003083981.1| ribonuclease E [Neisseria meningitidis alpha14]
 gi|254669302|emb|CBA08287.1| ribonuclease E [Neisseria meningitidis alpha14]
          Length = 927

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVSEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 VQTGKRRR 684



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y++
Sbjct: 70 TDRHGFLPFKEVSRSYFR 87


>gi|126728740|ref|ZP_01744555.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37]
 gi|126710670|gb|EBA09721.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37]
          Length = 1073

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 358/621 (57%), Gaps = 2/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN--VEDVKG 154
             D    +      D          E    +    +       SA ++ + +   +D   
Sbjct: 292 DEDDTNGSQRPMAADSRDDGLVVTGEPGETSEDDDDEGSGDDPSARDESIESVADDDTHE 351

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                      R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT+
Sbjct: 352 DIRPVRKTSRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTA 411

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKITN  DR  LK IA  ++VP G G+I+RTAGA RTK EIKRD+EYL RLW+ 
Sbjct: 412 RGGGISRKITNATDRSKLKAIANEIDVPKGAGLIIRTAGAKRTKTEIKRDYEYLQRLWEQ 471

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +REL L S+AP  +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+
Sbjct: 472 IRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRVAKDFMKMIMPSHAK 531

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+ Y +  P+F R  +E  L  +    V L S GY++I  TEALV+IDVNSGR+T+E  
Sbjct: 532 NVKHYTEQMPLFARYQVESYLGGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEGS 591

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IE+TA +TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEKKLK+ LK DRAR+
Sbjct: 592 IEETATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLKDKLKTDRARI 651

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS FGLLEMSRQR+R  ++E+TT+ C+ C G G IRS  ++AL ILR +EE  ++ 
Sbjct: 652 QVGRISGFGLLEMSRQRLRPGMIEATTQPCSACHGTGLIRSDDNMALQILRQIEEEGVRR 711

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
            +  ++V     +  YL+NQKR  +   E+R+G+++ +     L    F +EK       
Sbjct: 712 RSREVLVKCPVGIANYLMNQKREHVAIIESRYGMAVRIEGDPHLVAPDFSMEKFKTATRS 771

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
           V               D   E    +E    + ++E      DN   + +      + ++
Sbjct: 772 VPEATAPVVSVDTSIMDAIDEATEAEEIEAEVEEAEDQSSGDDNGDDQGNEQGSDDKPKK 831

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
           +RRRR        G   D  S      +  D      D  +     +      +  D   
Sbjct: 832 KRRRRRRRSKSKDGDQDDNGSNDGDTGNGSDDSDSNGDTGDSAEGGDTDGNTEDGQDGGK 891

Query: 695 PPVSTPEMESSNSSSDPIVKK 715
              S     S + S     K+
Sbjct: 892 KTSSRSRSRSRSRSRSSKPKE 912



 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 98/159 (61%), Gaps = 2/159 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 6   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 65

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++E        E                 + 
Sbjct: 66  YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAAEEEEDKPKKTSRSRSRKKSTK 125

Query: 121 EEVAPIANFSQETE--EESIISANNDVVSNVEDVKGGSP 157
                 +   +E    E   + A +D   N    + G+P
Sbjct: 126 PSSRSDSKSPKEPSGMETIDLGAEDDTSENEAVAETGAP 164


>gi|325131026|gb|EGC53752.1| ribonuclease E [Neisseria meningitidis OX99.30304]
 gi|325137029|gb|EGC59625.1| ribonuclease E [Neisseria meningitidis M0579]
 gi|325202969|gb|ADY98423.1| ribonuclease E [Neisseria meningitidis M01-240149]
 gi|325207233|gb|ADZ02685.1| ribonuclease E [Neisseria meningitidis NZ-05/33]
          Length = 919

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 MQTGKRRR 676



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|317165426|gb|ADV08967.1| Rne [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 916

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 7   QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 67  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 246 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 425

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 546 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 605

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 606 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 665

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 666 GQTGKRRR 673



 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG +
Sbjct: 1  MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLPF E+   Y+
Sbjct: 61 RHGFLPFKEVSRSYF 75


>gi|238562751|ref|ZP_04610205.1| ribonuclease E [Burkholderia mallei GB8 horse 4]
 gi|238521977|gb|EEP85424.1| ribonuclease E [Burkholderia mallei GB8 horse 4]
          Length = 610

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|122879239|ref|YP_201712.6| ribonuclease E [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 1232

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   ++G              +       +A L IP   ++  I+ +  +         
Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 544

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P  I      + G +   E  
Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 604

Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722
           +         +  +          + +   K+ R  +R+
Sbjct: 605 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 643



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|308388416|gb|ADO30736.1| ribonuclease E [Neisseria meningitidis alpha710]
          Length = 916

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 7   QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 67  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ + +  +FM  +MP 
Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVHDQVAEFMSYVMPG 245

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 246 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 306 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 425

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 426 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 485

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623
               +        ++    +       E          +      +        ++    
Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWW 545

Query: 624 ---------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                +    ++    R   R      +        S   V + 
Sbjct: 546 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 605

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 606 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 665

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 666 MQTGKRRR 673



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 53/76 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG +
Sbjct: 1  MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          RHGFLPF E+   Y++
Sbjct: 61 RHGFLPFKEVSRSYFR 76


>gi|291614219|ref|YP_003524376.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1]
 gi|291584331|gb|ADE11989.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1]
          Length = 835

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 201/587 (34%), Positives = 296/587 (50%), Gaps = 28/587 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  SP+        +  I+E +K  Q LLVQ+ K+ERGNKGAA+TTY+SLAGRY VLMPN
Sbjct: 71  KEVSPQYYSAGAGNRPSIKEALKEGQELLVQVEKDERGNKGAALTTYISLAGRYIVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
              G  +SR+I        L+++   +EVP GM +I RTAG  R   E++ D +YL +LW
Sbjct: 131 NPNGGGVSRRIEGEDR-NELRDVLAQMEVPHGMSIIARTAGIGRNLDELQWDLDYLKQLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           D +   A +  AP L+Y E +L+ RAIRD +  +I EI++  +  Y +A+ FM  +MP +
Sbjct: 190 DAIEGAAESEKAPSLIYLESSLVVRAIRDYFNPEIGEILIDTDDIYHQAQAFMSTVMPDH 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +++Y D  P+F R  IE Q++S H  +V LPS G ++I+ TEAL +ID+NS R+TR 
Sbjct: 250 VDRIKRYHDDVPLFSRFQIEHQIESAHARQVNLPSGGAIVIDHTEALTAIDINSARATRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE TAL TNLEAA+EIARQLRLRDL GLIV+DFIDME  KN R VE +L+++L  DRA
Sbjct: 310 GDIETTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKNQREVENRLRDALHFDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q   IS FGLLE+SRQR+  S+ ES+   C  C G G+IR   S AL+ILR ++E  +
Sbjct: 370 RIQTAKISRFGLLELSRQRLAPSLEESSYSTCPRCNGIGHIRGTESSALNILRIIQEEAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           + ++  I      DV  +LLN+KRA I   E+RF  ++ ++    +    + + +     
Sbjct: 430 KDSSAAIHAQVPVDVATFLLNEKRADIHRIESRFKTAVILIPNPHMETPQYNVTRLRQDD 489

Query: 573 ALVNTGHK-----VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
              +            +   P+     + +        +      +    + V  E    
Sbjct: 490 ITADHLQASYKLVEKPEEVKPALASTAQEIKAQRPQAAVRGITPAQPAPKHEVKTEKKTS 549

Query: 628 ----------------------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                                    +  R  +RR   +  + G   +         D  +
Sbjct: 550 LLGSLVGWLKSLGGESEPAKPAAPAKSGRGNQRRERGERSERGERGERGEGGKQRRDRNE 609

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
              +     N     +      +  +        P     +S   P 
Sbjct: 610 GGKQQRRDRNEAPRTDNKEQKEQPENRGERQQQQPRQPRPSSVDKPA 656



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD E+  K+Q K NIY A +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQPEELRVAIVDGQKLIDLDIETAGKEQRKSNIYKAVITRIEPSLEACFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           G RHGFLPF E+ P YY     +R ++ +     Q     V  D 
Sbjct: 62  GTRHGFLPFKEVSPQYYSAGAGNRPSIKEALKEGQELLVQVEKDE 106


>gi|220925873|ref|YP_002501175.1| ribonuclease, Rne/Rng family [Methylobacterium nodulans ORS 2060]
 gi|219950480|gb|ACL60872.1| ribonuclease, Rne/Rng family [Methylobacterium nodulans ORS 2060]
          Length = 1045

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 282/434 (64%), Positives = 343/434 (79%), Gaps = 1/434 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+  +R Y IQEVIK RQ++LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 365 RPRAPRRHYKIQEVIKRRQVILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 424

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKEIA  LEVP GMGVILRTAGASRTK EIKRDFEYLMRLW++VREL 
Sbjct: 425 SRKITSAADRKRLKEIASDLEVPEGMGVILRTAGASRTKPEIKRDFEYLMRLWESVRELT 484

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L+S AP LVYEEG+LIKRAIRDLY KDI E++VSGE  YREAKDFM++LMPS +++V+ Y
Sbjct: 485 LSSSAPALVYEEGSLIKRAIRDLYTKDIEEVLVSGEDAYREAKDFMRMLMPSQSKVVKPY 544

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            DP P+F R G+E QLD++    V+L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 545 RDPTPLFARYGVEQQLDAMFSNHVSLRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 604

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+KL E LK DRAR+QVG I
Sbjct: 605 LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQVGRI 664

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQRIR+ VLES++  C +C G+G++R+ SSVAL ILR++EE L++ ++HN+
Sbjct: 665 SPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSSSHNL 724

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578
           I+ T +DV LY+LNQKR  + E E RFGV+I +     L A   F +++G P Q      
Sbjct: 725 ILRTRTDVALYILNQKRVHLRELETRFGVTITIAADERLPATSAFNLDRGEPAQPPEPRL 784

Query: 579 HKVGSDSQAPSYDK 592
                 ++A     
Sbjct: 785 PVTSIRAEAVEPPP 798



 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MANKMLIDASH EETRVV ++ ++VEE DFE+ +++Q++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1  MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL 90
          YGGNRHGFL F EIHPDYYQIP +DR ALL
Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPIADRLALL 90


>gi|240015039|ref|ZP_04721952.1| Rne [Neisseria gonorrhoeae DGI18]
 gi|240116641|ref|ZP_04730703.1| Rne [Neisseria gonorrhoeae PID18]
 gi|240122107|ref|ZP_04735069.1| Rne [Neisseria gonorrhoeae PID24-1]
 gi|240124727|ref|ZP_04737613.1| Rne [Neisseria gonorrhoeae SK-92-679]
          Length = 927

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 GQTGKRRR 684



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 70 TDRHGFLPFKEVSRSYF 86


>gi|255021320|ref|ZP_05293368.1| Ribonuclease E [Acidithiobacillus caldus ATCC 51756]
 gi|254969183|gb|EET26697.1| Ribonuclease E [Acidithiobacillus caldus ATCC 51756]
          Length = 703

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 200/608 (32%), Positives = 315/608 (51%), Gaps = 8/608 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I +    ++ + +        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQKLLDLDIEHTFREQKKSNVYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +         +   +  IQ++++  Q ++VQ+ KEER +KGAA+TT++SLAGRY VLMPN
Sbjct: 69  EISREYFSQPEQPGRKRIQDLVREGQEVIVQVDKEERSSKGAALTTFVSLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   +SR+I      + +++  + L++P  MGVI RTAG  +    ++RD EYL ++W
Sbjct: 129 NPRAGGVSRRIEGEDRTQ-IRQHLQMLDIPDNMGVIARTAGIGQDFEALQRDLEYLKQIW 187

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E A  + AP L+Y+EGN++ RA+RD + +DI E+++  E  ++ A+ FM  +MP  
Sbjct: 188 QAIVEAAEKAPAPFLIYQEGNVVVRALRDHFSEDIGEVLIDDESAFQAAQQFMTAMMPKV 247

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y++  P+F R  IE Q++S    EV L S G ++I+ TEALV+IDVNSG+ST+ 
Sbjct: 248 LNRLKLYDNDIPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAIDVNSGKSTKG 307

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             I +TA QTNLEAAEE+ARQ+RLRDL GLIVVD IDME  K+ R VE +LKE+LK DRA
Sbjct: 308 QDIAETAFQTNLEAAEEVARQIRLRDLGGLIVVDLIDMESPKHQREVESRLKEALKLDRA 367

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQVG IS FGLLEMSRQR+ +S+ E++ + C  C G G IR     AL +LR + E  L
Sbjct: 368 RVQVGRISRFGLLEMSRQRLGASLEEASYEPCPRCSGTGQIRGCEGTALHVLRLLHEEAL 427

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +  A  +      DV +YLLN+KR  ++E EA+    I ++    L    + I++     
Sbjct: 428 KAGAAEVECKVPVDVAVYLLNEKRLPLLELEAKSNTRITIIPDPALLTPHYEIQRVKA-- 485

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                 H   ++S     D                 +        +++    T     ++
Sbjct: 486 -EATPAHNERTNSSRNLRDLPNRPARAQNGAAQAALNPLTAPPPPSVLPPPKTLPQSPQQ 544

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           R +   + AT   +  +   V ++ +  +           +    +         +    
Sbjct: 545 RDKSASKTATPPSEGILARFVRALVSRYEPVDSQTFLTRALGEEAIPPAAEPVSGDVETK 604

Query: 693 SIPPVSTP 700
           +     TP
Sbjct: 605 ASGDTETP 612



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 61/106 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+H EE RV ++   ++ +LD E   ++Q K N+Y  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATHPEELRVALVDGQKLLDLDIEHTFREQKKSNVYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
           RHGFLP  EI  +Y+  P    +  +++      +     D     
Sbjct: 61  RHGFLPLKEISREYFSQPEQPGRKRIQDLVREGQEVIVQVDKEERS 106


>gi|316985117|gb|EFV64069.1| ribonuclease E [Neisseria meningitidis H44/76]
          Length = 916

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 7   QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 67  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 246 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 425

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 546 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 605

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 606 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 665

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 666 VQTGKRRR 673



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 53/76 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG +
Sbjct: 1  MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          RHGFLPF E+   Y+Q
Sbjct: 61 RHGFLPFKEVSRSYFQ 76


>gi|240081628|ref|ZP_04726171.1| Rne [Neisseria gonorrhoeae FA19]
 gi|240124401|ref|ZP_04737357.1| Rne [Neisseria gonorrhoeae PID332]
          Length = 927

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVSAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 GQTGKRRR 684



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 70 TDRHGFLPFKEVSRSYF 86


>gi|58427290|gb|AAW76327.1| ribonuclease E [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 1237

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 15  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 74

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 75  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 134

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 135 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 193

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 194 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 253

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 254 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 313

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 314 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 373

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 374 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 433

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 434 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 493

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   ++G              +       +A L IP   ++  I+ +  +         
Sbjct: 494 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 549

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P  I      + G +   E  
Sbjct: 550 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 609

Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722
           +         +  +          + +   K+ R  +R+
Sbjct: 610 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 648



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 7   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 66

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 67  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 115


>gi|258592844|emb|CBE69153.1| Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) [NC10
           bacterium 'Dutch sediment']
          Length = 510

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 183/565 (32%), Positives = 287/565 (50%), Gaps = 58/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++++++S V ETRV VL D  + EL  +    K I GNIY  +V ++ P +QAAFVD
Sbjct: 1   MKREIIVNSSIV-ETRVAVLEDGVLVELLIDDSKNKSIAGNIYKGRVLKILPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I                        D E     +T G+     +   
Sbjct: 60  LGLAKDAFLYVRDI----------------------FEDVEEYEQLLTIGEEGESAESPD 97

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE  P  +  +                                   Q  I+E++K  Q +
Sbjct: 98  EEPRPTFSRGRRP---------------------------------QASIEEILKEGQEI 124

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           + Q+ +E  G KGA +T++++L GRY V MP       +SRKI N  +R  LK+I   + 
Sbjct: 125 VAQVAREPLGTKGARITSHITLPGRYLVYMPTEQHVG-VSRKIENEGERSRLKQIIEEIN 183

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RTAG  + + EI+ D E+L  LW  ++  A    AP LV ++ +LI R  R
Sbjct: 184 PQRE-GVIVRTAGVGKERAEIEADLEFLRSLWKKIKGKAETLAAPALVQKDLDLIFRIFR 242

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ K++  ++V     Y    ++ + L P     +  Y +  PIF   GIE +++   +
Sbjct: 243 DLFTKEVVRLVVDSPTEYERCLEYAESLHPELKSHLFLYTEDEPIFKSFGIEREVEKALR 302

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +  L S GY+++ +TEALVSIDVN+G+   +H  E+T L+TNLEAA+EIARQ+RLRDL 
Sbjct: 303 HKAWLKSGGYIVLEETEALVSIDVNTGKYVGKHDFEETVLKTNLEAAQEIARQVRLRDLG 362

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  +++   V ++LKE+LK DR+   V  +S  GL+EM+R+R+R  + ++ 
Sbjct: 363 GIIIIDFIDMARQESRDRVVQELKEALKPDRSPTNVSLLSELGLVEMTRKRVRQGLNKAL 422

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           +  C  C G G+IRS  S+A  +LR VE  L       + +  H D++ +   +    I 
Sbjct: 423 SASCPECGGLGHIRSTPSIAHQVLREVEWRLFSKRIPLVRIRAHPDLIGWFQAEDGEVIE 482

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             +  +G  I +V    LA   + +
Sbjct: 483 ALQQTYGGEIVLVPEESLAPGKYQL 507


>gi|88859601|ref|ZP_01134241.1| RNase E [Pseudoalteromonas tunicata D2]
 gi|88818618|gb|EAR28433.1| RNase E [Pseudoalteromonas tunicata D2]
          Length = 1080

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 196/566 (34%), Positives = 297/566 (52%), Gaps = 6/566 (1%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
                 F  +  I++VIK  Q ++VQ+ KEERG KGAA+TT++S+AG Y VLMPN  +  
Sbjct: 78  FPKDYNFSGRPNIKDVIKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAG 137

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
            ISR+I        LK+    LE+P GMG+I+RTAG  ++  E+  D + L+  WD +  
Sbjct: 138 GISRRIEGDERTD-LKDALSRLELPKGMGLIVRTAGVGKSFEELDYDLKALLIHWDAIVT 196

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
            +    AP L+++E N+I RAIRD   +DI EI++   + + EAK  ++   P +   V+
Sbjct: 197 ASEKGPAPFLIHQESNVIFRAIRDYLRRDIGEILIDKTRVFEEAKAHIERFRPDFMSRVK 256

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
            Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS ++T+   IE+
Sbjct: 257 LYKGEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATKGGDIEE 316

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +LKE+++ DRARVQ+G
Sbjct: 317 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKEAVRPDRARVQIG 376

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
            IS FGLLEMSRQR+R S+ E++   C  C G G IRS  S+ALSILR +EE  ++    
Sbjct: 377 KISRFGLLEMSRQRLRPSLGEASQGTCPRCNGQGTIRSTESIALSILRLIEEEAIKDNTA 436

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
            +       V  YLLN+KR ++   E      + +V    +    + + +    + + + 
Sbjct: 437 QVNAQVPVSVAAYLLNEKRRSVSAIEKHHECDVVIVPNQHMETPHYEVHRLKHDETVESV 496

Query: 578 GHKVGSDSQAPSYDK-NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
            +      +A S+D   I+ V +++  L    S +               V        +
Sbjct: 497 SYSQIKKPEAMSFDASKIQKVEKEQPALQGVISPTEPAPVAKKPEPAPVAVAPSEGLLSK 556

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
             R       +    +V   Q       +      + +             +  D +  P
Sbjct: 557 LTRWVKSLFASEEKPEVKEAQERTTPPRNNDSRRRNNSRARP----PRKSVDASDSATKP 612

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722
              P  ++S+S  +   +  +  +RR
Sbjct: 613 ADKPVRDNSDSRVERDSRDNKNKRRR 638



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI   Y+
Sbjct: 62 AQRHGFLPLKEIARTYF 78



 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 48/150 (32%), Gaps = 2/150 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               Q          S  +  S  +              P  + + D  D+ V  +S   
Sbjct: 573 VKEAQERTTPPRNNDSRRRNNSRARPPRKSVDASDSATKPADKPVRDNSDSRVERDS-RD 631

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF- 686
            + +RRR   R+PA++  +    +  + ++   +  F    +  ++     +        
Sbjct: 632 NKNKRRRSPNRKPASEVVETAAAAVEAVVEQQPEPRFKERRQRRNLRKKVRVTEDVLETL 691

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           T +    + P    +++++ +      K +
Sbjct: 692 TLDDIKVVEPAPQVQVKTAQADVKVEDKPS 721


>gi|254670426|emb|CBA06017.1| ribonuclease E [Neisseria meningitidis alpha153]
          Length = 927

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 VQTGKRRR 684



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87


>gi|291042837|ref|ZP_06568578.1| ribonuclease E [Neisseria gonorrhoeae DGI2]
 gi|291013271|gb|EFE05237.1| ribonuclease E [Neisseria gonorrhoeae DGI2]
          Length = 921

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 12  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 72  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 132 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 191 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 251 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 311 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 371 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 431 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 491 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 550

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 551 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 610

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 611 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 670

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 671 GQTGKRRR 678



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 4  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 63

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 64 TDRHGFLPFKEVSRSYF 80


>gi|325205288|gb|ADZ00741.1| ribonuclease E [Neisseria meningitidis M04-240196]
          Length = 919

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVTEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|325145392|gb|EGC67669.1| ribonuclease E [Neisseria meningitidis M01-240013]
          Length = 919

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y++
Sbjct: 62 TDRHGFLPFKEVSRSYFR 79


>gi|59802104|ref|YP_208816.1| Rne [Neisseria gonorrhoeae FA 1090]
 gi|254494663|ref|ZP_05107834.1| ribonuclease E [Neisseria gonorrhoeae 1291]
 gi|260439598|ref|ZP_05793414.1| Rne [Neisseria gonorrhoeae DGI2]
 gi|268602309|ref|ZP_06136476.1| ribonuclease E [Neisseria gonorrhoeae PID18]
 gi|268683304|ref|ZP_06150166.1| ribonuclease E [Neisseria gonorrhoeae SK-92-679]
 gi|293398144|ref|ZP_06642349.1| ribonuclease E [Neisseria gonorrhoeae F62]
 gi|59718999|gb|AAW90404.1| putative ribonuclease E [Neisseria gonorrhoeae FA 1090]
 gi|226513703|gb|EEH63048.1| ribonuclease E [Neisseria gonorrhoeae 1291]
 gi|268586440|gb|EEZ51116.1| ribonuclease E [Neisseria gonorrhoeae PID18]
 gi|268623588|gb|EEZ55988.1| ribonuclease E [Neisseria gonorrhoeae SK-92-679]
 gi|291611407|gb|EFF40477.1| ribonuclease E [Neisseria gonorrhoeae F62]
          Length = 919

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 GQTGKRRR 676



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 62 TDRHGFLPFKEVSRSYF 78


>gi|71907634|ref|YP_285221.1| ribonuclease E [Dechloromonas aromatica RCB]
 gi|71847255|gb|AAZ46751.1| RNAse E [Dechloromonas aromatica RCB]
          Length = 870

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 210/645 (32%), Positives = 322/645 (49%), Gaps = 18/645 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D     D+ I +    +  + I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYGADRHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +       P     +  IQ+ +K  Q L++Q+ K+ERGNKGAA+TTY+SLAGRY VLM
Sbjct: 70  FKEVSRAFFQPGTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVSLAGRYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR++      + L+++   LEVP GM +I RTA   R   E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRVDGDERAE-LRDVMDQLEVPNGMSLIARTAAIGRQAEELQWDLNYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A       L+Y EG+L+ RAIRD +  DI EI++  ++ Y +A+ FM  +MP
Sbjct: 189 LWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQARAFMGTVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++    +V LPS G ++I+ TEALV++DVNSGR+T
Sbjct: 249 GNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAVDVNSGRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TN EAAEE+ARQLRLRDL GLIV+DFIDME +KN R VE +L+++L+ D
Sbjct: 309 KGSDIEETAFKTNQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENRLRDALRFD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E++   C  C G G+IRS  S AL ILR +EE 
Sbjct: 369 RARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSAESAALHILRILEEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     + V    DV  +LLN+KR  I   E R  V+I ++  + L      I +   
Sbjct: 429 AMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPAHTITRLRH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL---EDIQDNIVSEESTGV 627
                +   +          ++ I+   Q EA  P  ++       D    I+ E++   
Sbjct: 489 DDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPIMPEKAEAP 548

Query: 628 IRKRRRRRR----------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
           +    +             R  P      A         +   D   D      +    +
Sbjct: 549 VAAPAQPEGGLFSKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRGGRNGNRRD 608

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                     E  + +    +  +   +++      +     K R
Sbjct: 609 EERGERKERPERKERNAVDKAPQDGTPASNGERKERRPRGERKER 653



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY   +TR+EPSL+A FVDYG
Sbjct: 2   KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   ++Q      +A ++++     +     D    G+
Sbjct: 62  ADRHGFLPFKEVSRAFFQPGTEVGRARIQDALKEGQELIIQVDKDERGN 110


>gi|268597724|ref|ZP_06131891.1| ribonuclease E [Neisseria gonorrhoeae FA19]
 gi|268683028|ref|ZP_06149890.1| ribonuclease E [Neisseria gonorrhoeae PID332]
 gi|268551512|gb|EEZ46531.1| ribonuclease E [Neisseria gonorrhoeae FA19]
 gi|268623312|gb|EEZ55712.1| ribonuclease E [Neisseria gonorrhoeae PID332]
          Length = 919

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVSAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 GQTGKRRR 676



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 62 TDRHGFLPFKEVSRSYF 78


>gi|325143209|gb|EGC65549.1| ribonuclease E [Neisseria meningitidis 961-5945]
 gi|325197483|gb|ADY92939.1| ribonuclease E [Neisseria meningitidis G2136]
 gi|325199408|gb|ADY94863.1| ribonuclease E [Neisseria meningitidis H44/76]
          Length = 919

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|319411318|emb|CBY91729.1| ribonuclease E (RNase E) [Neisseria meningitidis WUE 2594]
          Length = 927

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 VQTGKRRR 684



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87


>gi|325203318|gb|ADY98771.1| ribonuclease E [Neisseria meningitidis M01-240355]
          Length = 919

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +    +  E++  N       + + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNIQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|121595592|ref|YP_987488.1| ribonuclease E [Acidovorax sp. JS42]
 gi|120607672|gb|ABM43412.1| RNAse E [Acidovorax sp. JS42]
          Length = 1025

 Score =  325 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 192/550 (34%), Positives = 294/550 (53%), Gaps = 6/550 (1%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             Q  IQ+VIK  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A  FM  +MP +
Sbjct: 191 TAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAHQFMAHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA
Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ G IS FGL+EMSRQR++ S+ E     C  C G G++R     +L +LR ++E  +
Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           + +   +      +V  +LLN+KR  I + E +  VS+ ++    L    + +E+     
Sbjct: 431 KDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPHYKLERLKHDD 490

Query: 573 -ALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
             L N           + Q     ++ E   +   ++     ++   + +      + G 
Sbjct: 491 PRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPEGAARGA 550

Query: 628 IRKRRRRRRR 637
            R + + ++R
Sbjct: 551 TRPQGQGQQR 560



 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA +++      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGN 110


>gi|167619212|ref|ZP_02387843.1| ribonuclease E [Burkholderia thailandensis Bt4]
          Length = 588

 Score =  325 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|312795516|ref|YP_004028438.1| ribonuclease E [Burkholderia rhizoxinica HKI 454]
 gi|312167291|emb|CBW74294.1| Ribonuclease E (EC 3.1.4.-) [Burkholderia rhizoxinica HKI 454]
          Length = 1100

 Score =  325 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 201/579 (34%), Positives = 300/579 (51%), Gaps = 22/579 (3%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I 
Sbjct: 84  MRSARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIE 143

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
               ++ L+E    LE+P GM +I RTAG  R+  E++ D  YL++LW  +   A  +  
Sbjct: 144 GDDRQE-LRETMAQLELPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAAANGTRG 202

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+Y E +L+ RAIRD +  DI EI++     + +A+ FM+++MP     V++Y D  P
Sbjct: 203 PLLIYLESSLVIRAIRDYFQPDIGEILIDTPDIHDQARAFMEVVMPDNLGKVKRYHDDVP 262

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F R  IE Q+++ +   V LPS G V+I+ TEALV+IDVNS R+T+   IE+TAL+TNL
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAVVIDHTEALVAIDVNSARATKGADIEETALRTNL 322

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK DRARVQ+G IS FGL
Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEASKSQREVEQRLKDALKHDRARVQMGKISRFGL 382

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  ++     I     
Sbjct: 383 MELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQVP 442

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
            +V  +LLN+KR  I + E+RF V++ ++    L    + +E+       ++        
Sbjct: 443 VEVTAFLLNEKRQEINKIESRFKVNVVLIPNKHLETPHYKLERLRHDDVRLDEPRASWRM 502

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVIRKRRRR--------- 634
           ++  + +   E  +        PK E+  + I  ++ +  +T      + R         
Sbjct: 503 AEEAARELESETGYSKRDSDAKPKQEAAVKGITPDMPAPSATPRPVPPQARPSAPVTPAA 562

Query: 635 -----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                      R              V    +         +          H       
Sbjct: 563 TASGGFIGWLKRIFSGEPPAQPAQATVKATPARPTGGRAGSEARQGTERNRPHRRGPQSG 622

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                  DV+  PV     E           +      R
Sbjct: 623 SRDAAPRDVAAQPVRGRRDERDTRDERAARDERSVRDTR 661



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGVEMRSARIQDALHEGQELIVQVEKEERGN 110


>gi|240129078|ref|ZP_04741739.1| Rne [Neisseria gonorrhoeae SK-93-1035]
          Length = 927

 Score =  325 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFLGYEGARARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 GQTGKRRR 684



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 70 TDRHGFLPFKEVSRSYF 86


>gi|254245934|ref|ZP_04939255.1| Ribonuclease E and G [Burkholderia cenocepacia PC184]
 gi|124870710|gb|EAY62426.1| Ribonuclease E and G [Burkholderia cenocepacia PC184]
          Length = 1090

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 199/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   +   NS  P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +   A    PK E+            S    R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSAAPQR 549



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|304389006|ref|ZP_07371053.1| ribonuclease E [Neisseria meningitidis ATCC 13091]
 gi|304337140|gb|EFM03327.1| ribonuclease E [Neisseria meningitidis ATCC 13091]
          Length = 927

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAAPVAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +    +  E++  N       + S P   +
Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNIQPAATVADSAPSETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 VQTGKRRR 684



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87


>gi|121634071|ref|YP_974316.1| ribonuclease E [Neisseria meningitidis FAM18]
 gi|120865777|emb|CAM09506.1| ribonuclease E [Neisseria meningitidis FAM18]
 gi|325133120|gb|EGC55792.1| ribonuclease E [Neisseria meningitidis M6190]
 gi|325139088|gb|EGC61634.1| ribonuclease E [Neisseria meningitidis ES14902]
          Length = 919

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 207/668 (30%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ + +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVHDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623
               +        ++    +       E          +      +        ++    
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWW 548

Query: 624 ---------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                +    ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y++
Sbjct: 62 TDRHGFLPFKEVSRSYFR 79


>gi|325129114|gb|EGC51963.1| ribonuclease E [Neisseria meningitidis N1568]
          Length = 919

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MPS
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENSKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715
           +     + +         NG     E  D +       E++  N       + + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y++
Sbjct: 62 TDRHGFLPFKEVSRSYFR 79


>gi|254481998|ref|ZP_05095240.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037688|gb|EEB78353.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 920

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 205/578 (35%), Positives = 308/578 (53%), Gaps = 10/578 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G          + +  I++V+K    ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 74  GREYFYRKSDGEGRMKIKDVVKEGTEIIVQVDKEERGNKGAALTTFISLAGRYMVLMPNN 133

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I      + L+E    LE+P GMGVI+RTAG  R+  E++ D  YL++LW+
Sbjct: 134 PRAGGISRRIDGDDRSE-LREALSALEIPNGMGVIIRTAGVGRSSEELQWDLNYLLQLWE 192

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + E    S    L+++E N+I RAIRD    DI ++++   + Y++A DF+  +MP + 
Sbjct: 193 KITEANNESKPATLLFQESNVIIRAIRDYLRDDIDQVLIDSPEAYQQADDFISQVMPQFK 252

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             +R YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 253 SKLRVYEDSIPMFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARATKGK 312

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TAL+TNLEAA+E+ARQLRLRD+ GLIV+DFIDM   K+ R VE +++++L  DRAR
Sbjct: 313 DIEETALKTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKSQRQVENRMRDALNIDRAR 372

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++ KVC  C G G IR   S+ALSILR +EE  ++
Sbjct: 373 VQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCTGQGTIRDTKSLALSILRLLEEEAIK 432

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
             +  I      DV  YLLN+KR  + E E    V + VV    L    F +++    + 
Sbjct: 433 ERSAEIRAIVPVDVAAYLLNEKRTALGEIERDAKVRVLVVPNPNLETPHFEVQRLRDDEI 492

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
             +       +   P  +   +                +        ++EST    +++ 
Sbjct: 493 DGDQEISYKIEVAEPDVESISDTHTAAIPQQEAAVQGVVPKAPSPQTAKESTTAKPEQKS 552

Query: 634 RRRRRRPATDHHDAGVVSD-----VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           ++   +   +    G+V+        + +       +   +       +   N  +    
Sbjct: 553 KQHSGKSTAEKSQPGLVARFFGKLFGAAEEKQPKQEESKPKSKQSGQKSSQGNRNNRNRN 612

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR----WWKRR 722
                    +  E +    +      +T       KRR
Sbjct: 613 RNRRGQGQQARGERQDDKRNQQQSQSRTGGSGEQQKRR 650



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 1/108 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KMLI+A+  EE RV ++   R+ +LD E+  + Q K NIY AK+TRVEPSL+AAFVD+G
Sbjct: 2   KKMLINATQPEELRVALVDGQRLYDLDIENRTRVQKKSNIYKAKITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
            +RHGFLP  EI  +Y+    SD +  +K  ++ +  +E +       
Sbjct: 62  ADRHGFLPLKEIGREYFY-RKSDGEGRMKIKDVVKEGTEIIVQVDKEE 108


>gi|222111814|ref|YP_002554078.1| Rne/Rng family ribonuclease [Acidovorax ebreus TPSY]
 gi|221731258|gb|ACM34078.1| ribonuclease, Rne/Rng family [Acidovorax ebreus TPSY]
          Length = 1029

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 192/550 (34%), Positives = 293/550 (53%), Gaps = 6/550 (1%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             Q  IQ+VIK  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A  FM  +MP +
Sbjct: 191 TAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAHQFMAHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA
Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ G IS FGL+EMSRQR++ S+ E     C  C G G++R     +L +LR ++E  +
Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           + +   +      +V  +LLN+KR  I + E +  VS+ ++    L    + +E+     
Sbjct: 431 KDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPHYKLERLKHDD 490

Query: 573 -ALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
             L N           + Q     ++ E   +   ++     ++   + +      + G 
Sbjct: 491 PRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPEGAARGA 550

Query: 628 IRKRRRRRRR 637
            R +   ++R
Sbjct: 551 TRPQGHGQQR 560



 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA +++      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGN 110


>gi|163759370|ref|ZP_02166456.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
 gi|162283774|gb|EDQ34059.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
          Length = 999

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 325/597 (54%), Positives = 401/597 (67%), Gaps = 9/597 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
                   +A DV   +++ P      +     + S   +       + + V   ED + 
Sbjct: 221 KGDDKPTEMAADVEADEISEPAPRRRRKSRNDDDGSSSDDNGGSEDDDVESV-GSEDAQE 279

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
             P    +K ++QY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT+
Sbjct: 280 ELPARPQRKPRKQYRIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 339

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKITN  DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+N
Sbjct: 340 RGGGISRKITNLPDRKRLKEIARELEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWEN 399

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VR L L S AP LVYEEG+LIKR+IRDLY KDISEI+VSGE+GYREAKDFMK+LMPS+A+
Sbjct: 400 VRNLTLQSTAPSLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKMLMPSHAK 459

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
           +V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEALV+IDVNSGRSTREH 
Sbjct: 460 VVQPYRDLHPIFARSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTREHS 519

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEE +NNR+VEK++K+ LK DRAR+
Sbjct: 520 IEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEENRNNRAVEKRMKDCLKNDRARI 579

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS+FGLLEMSRQRIR+SVLEST +VC  C G G+IRSQSSVAL +LR VEE+LL+ 
Sbjct: 580 QVGRISHFGLLEMSRQRIRASVLESTMQVCPTCGGNGHIRSQSSVALHVLRGVEEHLLKN 639

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           T H+IIV T  D  LY+LN KR T+V  E  FGVSI+      +    F I++G+ V+  
Sbjct: 640 TTHDIIVRTTGDTALYMLNHKRDTVVGLENMFGVSISFSADETVGANHFAIDRGAAVEKP 699

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
           VN  H   S                D+  +P+  +E  E+  D   ++++ G  R     
Sbjct: 700 VNIDHITVSSP--------AYPEDDDDPEIPVDDAEEAEENGDASEAQDARGEERNEDGT 751

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            R+RR            +  +       S +   +  D  + +           + D
Sbjct: 752 GRKRRRRRRRGGRKSEGENGNGDERAASSDETASDDGDDDDESSNNGNQADSASDGD 808



 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 84/167 (50%), Positives = 106/167 (63%), Gaps = 9/167 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDASH EETRVVV+R NR+EE DFES+HKKQ++GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAEKMLIDASHPEETRVVVVRGNRIEEFDFESQHKKQLRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+             D     D    ++  +
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPLADRQALLQAEAE---------DAANDPDFDNSDEPEV 111

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167
            +  P      +++++    A ++  S  +     S     ++ K+ 
Sbjct: 112 AKPKPKRQSRSKSQDKDKAKAKDESESGDDAEGSKSRPRRSRRGKKN 158



 Score = 43.8 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 52/170 (30%), Gaps = 18/170 (10%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE--DIQDNIVSEESTG 626
              QA  +      + S A S  +      +  A +  P   S +   + + + +E    
Sbjct: 829 DETQAGSDAATDGDTASDADSAPETDAPSPEATAAIEHPAETSSDAGPVTEAVQAEPEPE 888

Query: 627 VIRKRRRRRRRRRPA--------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             +K  R+RRR +                     AG  + V +               +D
Sbjct: 889 AEKKPARKRRRTKAQIAADEAAKAAEAGDDTAEAAGDAAPVEAETAAAAPVVTEAAVVAD 948

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                  E      T+   ++  PV T   E    +  P  KK  WW++R
Sbjct: 949 DAETGKPEEDRRNRTDLGAIASEPVVTSSSEKPEEAEKP--KKGGWWQKR 996


>gi|83952279|ref|ZP_00961011.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM]
 gi|83837285|gb|EAP76582.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM]
          Length = 928

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 254/524 (48%), Positives = 338/524 (64%)

Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
             S +  + S  +D          K   ++Y IQEVIK RQILLVQ+VKEERGNKGAA+T
Sbjct: 245 AASKDEAIESVADDDDEADIRPPRKPRPKRYKIQEVIKVRQILLVQVVKEERGNKGAALT 304

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
           TYLSLAGRY VLMPNT++G  ISRKITN  DRK LKEIA  ++VP G G+I+RTAGA RT
Sbjct: 305 TYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASEIDVPRGAGLIVRTAGAKRT 364

Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
           K EIKRD+EYL RLW+ +REL L S+AP  +YEEG+LIKR+IRDLY +DI E++V GE+G
Sbjct: 365 KAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVEGERG 424

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           YR AKDFMK++MPS+A+ V+ Y+D  P+F R  +E  L ++    V L S GY++I  TE
Sbjct: 425 YRIAKDFMKMIMPSHAKNVKNYQDAMPLFARYQVESYLGAMFNPTVQLKSGGYIVIGVTE 484

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           ALV+IDVNSGR+T+E  IE+TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDM+E++NN 
Sbjct: 485 ALVAIDVNSGRATKEGSIEETALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERRNNA 544

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           +VEK++K+ LK DRAR+QV  IS FGL+EMSRQR+R  ++E+TT+ C  C G G IRS  
Sbjct: 545 AVEKRMKDRLKTDRARIQVSRISGFGLMEMSRQRLRPGMIEATTQPCAACHGTGLIRSDD 604

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
           ++ALSILR +EE  ++  +  ++V     +  +L+NQKR  + + E R+G+S+ +     
Sbjct: 605 NLALSILRQIEEEGVRRRSREVLVKCPVAIANFLMNQKREHVAQIETRYGLSVRIEGDHT 664

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
           L    F +EK       V           +       E    +E                
Sbjct: 665 LISPDFSLEKFKTATRSVPEATAPVVSVDSSIMADIDEAEPIEEEAEDNLPGGDAPAETQ 724

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
               +      R+RRR  +R     D+   G   D S  +   +
Sbjct: 725 GEDDKPKKRRRRRRRRGGKRNGDEGDNGSDGDNGDNSDSEEAAE 768



 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/135 (57%), Positives = 94/135 (69%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ALL+E        +A  +D +    +  +    
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALLEEERAYAEALKAREEDDSKPKRSRRSRSRS 120

Query: 121 EEVAPIANFSQETEE 135
           +          E+ +
Sbjct: 121 KAAQADNGDVVESSD 135


>gi|268687457|ref|ZP_06154319.1| ribonuclease E [Neisseria gonorrhoeae SK-93-1035]
 gi|268627741|gb|EEZ60141.1| ribonuclease E [Neisseria gonorrhoeae SK-93-1035]
          Length = 919

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFLGYEGARARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 GQTGKRRR 676



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 62 TDRHGFLPFKEVSRSYF 78


>gi|309379095|emb|CBX22226.1| ribonuclease E [Neisseria lactamica Y92-1009]
          Length = 926

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 205/661 (31%), Positives = 309/661 (46%), Gaps = 36/661 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623
               +        ++    +       E          +               ++    
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 624 ------------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                                      +    R   RR      +   G   D S  +  
Sbjct: 557 DSFKAWLKRIFGGTSETPAVAETSEKRISGGNRNAPRRTGSRRQNPRRGNRHDGSRAEVR 616

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
               F      +    H       +  + N        +  E     + +     ++   
Sbjct: 617 ETADFKGKAADNQAAEHETRNAKDNRRSRNRQNERNAAAEAENPEVRTLAAATPSESETR 676

Query: 720 K 720
            
Sbjct: 677 P 677



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 70 TDRHGFLPFKEVSRSYF 86


>gi|319783258|ref|YP_004142734.1| ribonuclease, Rne/Rng family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169146|gb|ADV12684.1| ribonuclease, Rne/Rng family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 982

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 295/545 (54%), Positives = 376/545 (68%), Gaps = 5/545 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE----TEEESIISANNDVV 146
           ++    +             DV        E+ +   +   +     E +S    +++V 
Sbjct: 189 QDEGEIREGGPTSIAASVEADVISEAVPLAEQGSEATSGDNDRGMLEEVQSSHPDDHEVE 248

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
           S   +       +  K  +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY
Sbjct: 249 SVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRY 308

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
           SVLMPNT++G  ISRKIT+ VDRK LKE+   LEVP GMGVILRTAG SRTK EIKRD+E
Sbjct: 309 SVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTKAEIKRDYE 368

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YLMRLW+NVR L L S AP LVYEEG+LIKR++RDLY KDI EI+VSGE+GYREAKDFM+
Sbjct: 369 YLMRLWENVRNLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGEEGYREAKDFMR 428

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
           +LMPS+A++V+ + D  PIF R+GIE QLD + Q +VTL S GY+IINQTEALV+IDVNS
Sbjct: 429 MLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNS 488

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           GRST+EH IEDTAL TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE +NNRSVEK+LK+ 
Sbjct: 489 GRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRSVEKRLKDH 548

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           LK DRAR+QVG IS+FGL+EMSRQRIR+SVLEST K C +C G G++RS SSVAL ++R+
Sbjct: 549 LKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVALMVVRA 608

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           +EE+LL+ +  +I V T +   LY+LN KR T+VE E+RFG++I V     +  + + I 
Sbjct: 609 IEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITVEADDSVGSQHYAIF 668

Query: 567 KGSPVQALVNTGHKVG-SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +G+  +                P   ++   V +++   PI   +  +  Q       + 
Sbjct: 669 RGALAEKPEGFVEARSFPAYVEPDEPEDEIAVIEEDDEAPIQAEQPRQQPQQQQPRPAAG 728

Query: 626 GVIRK 630
           G   +
Sbjct: 729 GEEGE 733



 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 116/268 (43%), Gaps = 30/268 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDASH EETRVVV+R NR+EE DFES+ KKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MPNKMLIDASHPEETRVVVIRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK----------------------------- 91
           YGGNRHGFL F EIHPDYYQIP +DRQALL+                             
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEENEDGDGDDRQSRDRGRRGR 120

Query: 92  -ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
                 +   E   D    G+ +   D + E           T E    +A++   ++  
Sbjct: 121 RRGGKPRDRGEHKRDAADSGEASDAADEAEEGADAGVEDISHTSEIIEHAADSSEHADAS 180

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           +    S E    + +              ++ + V        A                
Sbjct: 181 EHGEDSAEQDEGEIREGGPTSIAASVEADVISEAVPLAEQGSEATSGDNDRGMLEEVQSS 240

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARG 238
                            + +N ++  R 
Sbjct: 241 HPDDHEVESVGAEDALEEVRNRRKPVRR 268


>gi|145588576|ref|YP_001155173.1| ribonuclease [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046982|gb|ABP33609.1| RNAse E [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 879

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 204/587 (34%), Positives = 309/587 (52%), Gaps = 14/587 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   I++ ++  Q ++VQ+ KEERG KGAA+T+++SLAGRY VLMPN
Sbjct: 72  EVARTYFKEGIDVRNASIKDALREGQEIIVQVEKEERGQKGAALTSFVSLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    LEVP GM +I RTAG  R   E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LREAMSQLEVPEGMSIIARTAGIGRDATELQWDLSYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E A  + AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A  FM ++MP  
Sbjct: 191 KAIDEAAKGNSAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYEQAAAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALVS+DVNS R+TR 
Sbjct: 251 LPRVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+EIARQ RLRDL GLIV+DFIDME  K  + VE +L+++L+ DRA
Sbjct: 311 SDIEETATRTNLEAADEIARQARLRDLGGLIVIDFIDMESSKAQKDVENRLRDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+EMSRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISKFGLMEMSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KRA +++ E RF V++ +V    L    + +E+     
Sbjct: 431 KENTAAIHTQVPVEVAAFLLNEKRAEVIKIETRFKVNVLMVPNKHLETPHYKLERLRHDD 490

Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             L +         +A    +    V + +A L +    +++ I     +          
Sbjct: 491 PRLDDQKASYVMAEEAARELETDTTVSRKDAELKVRPEAAVKGITPAQPA-------PIS 543

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           + R  R    T     G+   +  + +    + +    PS+    N 
Sbjct: 544 QPRPARTEKTTTESSGGLFGFIKKLFSS-SPAVEEKPAPSNTRGRNQ 589



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 63/108 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
             RHGFLPF E+   Y++     R A +K++     +     +    G
Sbjct: 62  EERHGFLPFKEVARTYFKEGIDVRNASIKDALREGQEIIVQVEKEERG 109


>gi|294787875|ref|ZP_06753119.1| ribonuclease E [Simonsiella muelleri ATCC 29453]
 gi|294484168|gb|EFG31851.1| ribonuclease E [Simonsiella muelleri ATCC 29453]
          Length = 963

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 199/585 (34%), Positives = 300/585 (51%), Gaps = 28/585 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 71  KEVSRAYFQDYEGGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    L VP GM +I RTAG  R+  E++ DF YL++LW
Sbjct: 131 NPRGGGVSRRIEGEDRAE-LKEAMSQLNVPNGMSIIARTAGIGRSAEELQWDFNYLLQLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E A     P+L++ E +L+ RAIRD Y  DI+EI+V   + + +  +FM  +MP+ 
Sbjct: 190 HAIEEAAAAHKQPYLLFMESSLVIRAIRDYYRPDIAEILVDNPEVFEQVSEFMSYVMPNN 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ YED  P+F R  IE Q+++     V+LPS G ++I+ TEALVSIDVNS R+TR 
Sbjct: 250 LSRLKLYEDHTPLFSRLQIEQQIETAFARSVSLPSGGAIVIDHTEALVSIDVNSARATRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE  L+++LKKDRA
Sbjct: 310 SDIEETAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQREVENVLRDALKKDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IRS  S AL +LR +++  +
Sbjct: 370 RVQMGKLSRFGLLELSRQRLQPALSESSHIACPRCAGTGVIRSIESTALHVLRLIQDAAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      DV  +LLN+KRA +   E R  +S+ ++    + +  + I +     
Sbjct: 430 KENTGEVHAQVPVDVATFLLNEKRAELFGMEERLDMSVFLIPNPHMENPHYEITRIRTDD 489

Query: 573 ALVNTGHKVGSDSQAPSYD------KNIECVWQDEALLPIPKSESLEDIQD--------- 617
              N        +Q    +      K  E V + E  +   K  S    Q          
Sbjct: 490 VEENVLPSYKRVTQPEKKEAVPFANKKGEKVVRQEPAVKGLKHASPAPSQAKLEKSWWDN 549

Query: 618 ------------NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                            E+    + +   +R         +          Q V+D    
Sbjct: 550 FKGWLGGILGQTEKTQPETPTGKKLKTTNKRNNPNRRQQSNKQRRQQSEQQQPVMDAGKS 609

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
                                 +N + +    +  +   + ++  
Sbjct: 610 RLQYDKQQQQRQNKNQDKPSDKQNQNYNAKAENRKQRNQNKNAKQ 654



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 53/78 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLPF E+   Y+Q
Sbjct: 62 VERHGFLPFKEVSRAYFQ 79


>gi|90413247|ref|ZP_01221242.1| Putative ribonuclease E [Photobacterium profundum 3TCK]
 gi|90325799|gb|EAS42257.1| Putative ribonuclease E [Photobacterium profundum 3TCK]
          Length = 1099

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 208/667 (31%), Positives = 320/667 (47%), Gaps = 41/667 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  S         
Sbjct: 12  EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPKGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  V+E A ++ AP L+++E N+I RAIRD   +DI EI++   K +  A+D +KL+ P 
Sbjct: 191 WSAVKEAADSNPAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA QTNLEAA+E+ARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETAFQTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  VC  C G G +R   S++LSILR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  ++      V  YLLN+KR ++   E    V + +V   E+    F + +    
Sbjct: 431 LKDNSAQVLAIVPVAVASYLLNEKRRSVQHIEKFHTVRVVIVPNAEMETPHFEVLRIREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK----------------SESLEDI 615
                  +++    +A    +  E   Q+  +    +                +   +  
Sbjct: 491 DQKDTLSYQMPKVIEAIKEAEAAEAPQQERVIKKHEEPVLQGFASPKTPAPVVAAKPKPA 550

Query: 616 QDNIVSEEST------------------GVIRKRRRRRRRRRPATDHHD-AGVVSDVSSI 656
                + E+                   G   +   ++   +    + +  G        
Sbjct: 551 APTKSATEAKAQPGLISRLFSALTNLFSGPAEQEPEKKVETKQDNRNDNRRGERQGNRRN 610

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +          D    N   NG                  E ++   +     +  
Sbjct: 611 DTRRNKDSSRRNNRQDTDRDNSENNGEQRQQRQQRPRRNEKPQQERQNDKPAKQRSPRNE 670

Query: 717 RWWKRRK 723
              + RK
Sbjct: 671 DKRQPRK 677



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  E+  DY      YQ   + ++ L +   +     +    + 
Sbjct: 62  SERHGFLPLKEVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112


>gi|270293859|ref|ZP_06200061.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275326|gb|EFA21186.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 524

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 152/580 (26%), Positives = 267/580 (46%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D ++ EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKQLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +                                       +SL
Sbjct: 60  VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ LS AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W++       +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  Y E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIHVNSEAVYHEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              ++  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  +  Y+     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYVNQGLVSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPNQKLAFLEYVFYDLQGEEIDMKEE 520


>gi|160889024|ref|ZP_02070027.1| hypothetical protein BACUNI_01444 [Bacteroides uniformis ATCC 8492]
 gi|317479305|ref|ZP_07938440.1| rne/Rng family ribonuclease [Bacteroides sp. 4_1_36]
 gi|156861491|gb|EDO54922.1| hypothetical protein BACUNI_01444 [Bacteroides uniformis ATCC 8492]
 gi|316904593|gb|EFV26412.1| rne/Rng family ribonuclease [Bacteroides sp. 4_1_36]
          Length = 524

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 152/580 (26%), Positives = 267/580 (46%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D ++ EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKQLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +                                       +SL
Sbjct: 60  VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ LS AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W++       +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  Y E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIHVNNEAVYHEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              ++  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  +  Y+     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYVNQGLVSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPNQKLAFLEYVFYDLQGEEIDMKEE 520


>gi|271500124|ref|YP_003333149.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586]
 gi|270343679|gb|ACZ76444.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586]
          Length = 1075

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 196/631 (31%), Positives = 302/631 (47%), Gaps = 8/631 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGMETPHYAVLRIR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +     A S     E V +  A      +           ++ +     
Sbjct: 491 KGEEKQALSYMLPQLLDAESQQATEEQVSERRAPEQPALASFTMPDIPQDEAQPAPTTPA 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +             G +  + +  + + D      +          +   +     
Sbjct: 551 PSVEKPASSERGLFGRFIGALKGMFASSDAVKDKPAEAAKTESDDQEQKQDRRNNRRQSG 610

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                     P         D   +  R  +
Sbjct: 611 RRDRTRDNREPRERGERGERDEQRRNKRTQQ 641



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|325267843|ref|ZP_08134493.1| ribonuclease E [Kingella denitrificans ATCC 33394]
 gi|324980724|gb|EGC16386.1| ribonuclease E [Kingella denitrificans ATCC 33394]
          Length = 917

 Score =  323 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 195/556 (35%), Positives = 293/556 (52%), Gaps = 4/556 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 71  KEVSRAYFQDYEGGRARIQDVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    L+VP GM +I RTAG  R+  E++ DF YL++LW
Sbjct: 131 NPRGGGVSRRIEGDDRAE-LKEAMAHLDVPHGMSIIARTAGIGRSTEELQWDFNYLLQLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E A     P+L++ E +L+ RAIRD Y  DI+EI+V   + Y +  +FM  +MP+ 
Sbjct: 190 RAIEEAAAAHKEPYLLFMESSLVIRAIRDYYRPDIAEILVDNPEVYEQVSEFMSYVMPNN 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y D  P+F R  IE Q+++     V+LPS G ++I+ TEALVSIDVNS RSTR 
Sbjct: 250 LSRLKLYTDHTPLFSRLQIEQQIETAFARSVSLPSGGAIVIDHTEALVSIDVNSARSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE  L+++LKKDRA
Sbjct: 310 ADIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQRDVENVLRDALKKDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IRS  S AL +LR +++  +
Sbjct: 370 RVQMGKLSRFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHVLRLIQDAAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      DV  +LLN+KRA +   E R  VS+ ++    L +  + I +     
Sbjct: 430 KDNTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNTNLENPHYEITRIRTDD 489

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
              N        +     +       + E       +                       
Sbjct: 490 VEENAEPSYKRVAPPEKTESVPFSNSKGEKAARQEPAVKGLRHASPAPVSSQNASWWDSF 549

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +   ++        +G   + +   +    +       S   N N   N      +    
Sbjct: 550 KNWLKKLFG---DTSGSSENTAPAASSFGKNGSKSRGGSKRNNPNRRPNAGKNREDGEQQ 606

Query: 693 SIPPVSTPEMESSNSS 708
           S+    +   +  + +
Sbjct: 607 SVNERKSRNADKRSRN 622



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+H EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATHSEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLPF E+   Y+Q
Sbjct: 62 VERHGFLPFKEVSRAYFQ 79


>gi|261391733|emb|CAX49182.1| ribonuclease E (RNase E) [Neisseria meningitidis 8013]
          Length = 919

 Score =  323 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENSKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAASAAETSEKRSTANRSGSRVNNRRQNPRRSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++  N         + P   +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQGRNVQPAATVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTSKRRR 676



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|238920271|ref|YP_002933786.1| ribonuclease E [Edwardsiella ictaluri 93-146]
 gi|238869840|gb|ACR69551.1| ribonuclease, RNaseE/RNaseG family , putative [Edwardsiella
           ictaluri 93-146]
          Length = 1071

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 201/651 (30%), Positives = 311/651 (47%), Gaps = 27/651 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSSYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK  +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S+ALSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+  +  +       V  YLLN+KR  +   E R   V + VV   ++    + + +  
Sbjct: 431 ALKENSREVHAIVPVPVASYLLNEKRDAVNAIEKRQPDVRVIVVPNEQMQTPHYAVMRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI-------PKSESLEDIQDNIVSE 622
             +      +K+    +A +         +     P          +  ++  QD  ++ 
Sbjct: 491 KGEETHTLSYKLPQLHEAEACGDEEVPAERKRPEQPALAAFSLNVAAPPIDAAQDKPIAA 550

Query: 623 ESTGVIRKRRRRRRR-----------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
           +     R +     R           +           V +     +      +      
Sbjct: 551 DVAPTERPQPVADTRPGLFGRLVASLKGIFAGEAAPAPVQEDKPAVSAERPREESRSPQE 610

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                           E  D        PE       ++   ++ R  +RR
Sbjct: 611 RRGRRQNPRRERGERGERGDRP-ERGERPERGERPERANRDGRENRDEQRR 660



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|82702193|ref|YP_411759.1| ribonuclease [Nitrosospira multiformis ATCC 25196]
 gi|82410258|gb|ABB74367.1| RNAse E [Nitrosospira multiformis ATCC 25196]
          Length = 977

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 213/670 (31%), Positives = 317/670 (47%), Gaps = 52/670 (7%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++    +   D E+   +    ++       LE           + E + +  
Sbjct: 11  PEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLE----------PSLEAAFVEY 60

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
             +    +   +             +  +Q+ +   Q L+VQ+ K+ERG KGAA+TTY+S
Sbjct: 61  GGERHGFLPFKEISRSYLKESPDPGRVRVQDALHEGQELIVQVDKDERGTKGAALTTYIS 120

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +G  +SR+I      + L+++   L +P GM +I RTAG  RT+ E+
Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRIEGEDRAE-LRDVMSHLNIPQGMSIIARTAGIGRTEEEL 179

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  YL++LW  + + +       L+Y+E +L+ RAIRD + ++I EI++  E  Y +A
Sbjct: 180 QWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIYEQA 239

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
             FM  +MP     V+ Y D  P+F R  IE Q+++ +  +VTLPS G ++I+ TEALVS
Sbjct: 240 CQFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALVS 299

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNS R+TR   IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDME  +N R VE 
Sbjct: 300 VDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQREVEN 359

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +L ++L+ DRARVQ+G IS FGLLE+SRQR+R S+ ES+   C  C G G+IR   S AL
Sbjct: 360 RLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSAL 419

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR ++E  ++     +      DV  YLLN+KRA I   EAR  VS+ ++  I L   
Sbjct: 420 HILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARLKVSVVLIPNIHLETP 479

Query: 562 LFYIEKGSPVQALVNTGH-------------KVGSDSQAPSYDKNIECVWQDEALLPIPK 608
            + I +       +                  + S  Q P   +    V       P P 
Sbjct: 480 NYSITRLRHDDVKLGEVQTSYQMVEKPAQDIPLPSSGQEPKPMRQQAAVRGITPAQPAPV 539

Query: 609 SESLEDIQDN------------------------IVSEESTGVIRKRRRRRRRRRPATDH 644
            E     +                               +     + + RR RR      
Sbjct: 540 REQKPQHEPEPLSLLDKIFGWFKQGGVGEKTVRHEPPVAAAHPEERGQGRRDRREGRIGE 599

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
           ++    +    +Q   D   +   E S     +L         E  +           + 
Sbjct: 600 NEKAARA----VQRPRDARAERGAEISPSGAPDLTREAVPQRQERSEAKTQGERAAAKKH 655

Query: 705 SNSSSDPIVK 714
             S  +   +
Sbjct: 656 PRSQREEKPR 665



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY A +TR+EPSL+AAFV+YG
Sbjct: 2  KRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
          G RHGFLPF EI   Y
Sbjct: 62 GERHGFLPFKEISRSY 77


>gi|227821681|ref|YP_002825651.1| ribonuclease E [Sinorhizobium fredii NGR234]
 gi|227340680|gb|ACP24898.1| ribonuclease E [Sinorhizobium fredii NGR234]
          Length = 922

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 326/597 (54%), Positives = 408/597 (68%), Gaps = 4/597 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII-- 139
           P   R+A  K S   +      +D+ + G++    D         A   ++ +++     
Sbjct: 149 PKRTRRAKAKTSEQKEEVQADASDEGSSGEMAAMVDVDSISEDVDARRRRDDDDDDDDGH 208

Query: 140 --SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
                       ED     P+   +K ++QY IQEVIK RQI+LVQ+ KEERGNKGAA+T
Sbjct: 209 DGEKEIIESVGAEDAMEEVPDRQVRKPRKQYRIQEVIKRRQIILVQVAKEERGNKGAALT 268

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
           TYLSLAGRYSVLMPNT++G  ISRKITN  DRK LKEIARGL+VP GMGVILRTAGA+RT
Sbjct: 269 TYLSLAGRYSVLMPNTARGGGISRKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRT 328

Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
           K+E+KRDFEYLMRLW+NVR L LNS AP LVYEEG+LIKR+IRDLY KDISEIIVSGE+G
Sbjct: 329 KVEVKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEG 388

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           Y+EAK FMK+LMPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTE
Sbjct: 389 YKEAKSFMKMLMPSHAKVVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTE 448

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           ALVSIDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGL+V+DFIDMEEK+NNR
Sbjct: 449 ALVSIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNR 508

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           +VEKKLK+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST + C +C G G++RSQS
Sbjct: 509 AVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHVRSQS 568

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
           SVAL +LR +EE+LL+ T H+I+V T  ++ LYLLNQKR TI +YE RFGVSI +     
Sbjct: 569 SVALHVLRGIEEHLLKNTTHDIVVRTIPEIALYLLNQKRGTITDYERRFGVSIIIDADAH 628

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
           +  + F I++G PV+  V     +    +    D+++      +       +    +   
Sbjct: 629 VGAQHFAIDRGEPVENPVKIEQLLHFAPEPEDEDEDVVIEEDLDEEEAEEITAERREQPK 688

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              S++  G  RKRRRRRR +            ++  +   V +         +   
Sbjct: 689 AQPSDDQGGRKRKRRRRRRGKGAGQTPESVAAEAEDMADGAVDEADESEDEGEAQDA 745



 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 84/167 (50%), Positives = 98/167 (58%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLIDASH E TRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVDYGGN
Sbjct: 1   MLIDASHSEGTRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGGN 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           RHGFL F EIHPDYYQIP +DRQALLK         E +    T  +  +          
Sbjct: 61  RHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARREEEIEPVETASEQVVEPPKDEAPAE 120

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171
             A    ET E +            +     +     K  +++  +Q
Sbjct: 121 AEAPGVAETTEAATEVQAEAEAEKPKAKPKRTRRAKAKTSEQKEEVQ 167



 Score = 41.5 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 1/151 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                        +  +  +      + +         ++E                 + 
Sbjct: 769 EAEGEAGLATEAGEESADAEAGAETEEPDFAAAAAVEHAVEVAPAEAEVPVVEAAKPAKP 828

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +R R++  A +       +          D          + +    +            
Sbjct: 829 KRSRKKAVAVEAAAENADTAAEQAVEAQPDETVPAAVEDAVADLEAAKPARSNRDLTTIA 888

Query: 693 SIPPVSTPEMESS-NSSSDPIVKKTRWWKRR 722
           S P V++   +   N       KK  WW+RR
Sbjct: 889 SEPVVTSNVAKGDGNEEESAKPKKGGWWQRR 919


>gi|295675986|ref|YP_003604510.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002]
 gi|295435829|gb|ADG14999.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002]
          Length = 489

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 135/566 (23%), Positives = 227/566 (40%), Gaps = 81/566 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LI+ +  +ETRV +++   V+EL  E    +   GN+YL KV RV P +Q+AF+D
Sbjct: 1   MNEEILINVT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   +I HP         R A   +        E +  +     V +  D  
Sbjct: 60  IGLERAAFLHVADIWHP---------RIAGEAQHQAPHQPIEKIVFEGQTLMVQVVKDPI 110

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
             + A ++          +       +   + ++  +  +                    
Sbjct: 111 GTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREA------------------- 151

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
                                 +  R + ++P   KG  I R I      + L      L
Sbjct: 152 ----------------------VRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYL 189

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                   IL  A        + +D     R+  +             V +E + I+   
Sbjct: 190 RKTW--ATILSQAQRMPPTSLLYQDLNLAQRVLRDF------------VNDETSRIQVDS 235

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           R+ +               +   DF     P+ +  +  Y    P+F    IE ++    
Sbjct: 236 RETH---------------QMLADFAAEFTPAVSSKLHHYTGERPLFDLYNIEAEIQRAL 280

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L
Sbjct: 281 SRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 340

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDME  ++   V  +LK++L +DR RV V   S  GL+EM+R+R R S+   
Sbjct: 341 GGVIIIDFIDMENAEHRDQVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV 400

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C+G G +++  +V   +LR +     Q+      V     V+   L ++   +
Sbjct: 401 LCEPCPVCQGKGQVKTARTVCYDVLREILRESRQFNPREFRVVASQQVIDLFLEEESQHL 460

Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565
                  G  +++ +   L+ + + I
Sbjct: 461 AMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|161525363|ref|YP_001580375.1| ribonuclease [Burkholderia multivorans ATCC 17616]
 gi|160342792|gb|ABX15878.1| ribonuclease, Rne/Rng family [Burkholderia multivorans ATCC 17616]
          Length = 1111

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 191/468 (40%), Positives = 281/468 (60%), Gaps = 3/468 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I
Sbjct: 140 DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 199

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW  +   + +  
Sbjct: 200 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 258

Query: 284 A--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
              P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP     V++Y D
Sbjct: 259 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 318

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +
Sbjct: 319 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 378

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK DRARVQ+G IS 
Sbjct: 379 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 438

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  ++     I  
Sbjct: 439 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 498

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
               +V  +LLN+KR  I + E+RF V I ++    L    + +E+     A ++     
Sbjct: 499 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 558

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              ++  + +   E  +   A    PK E+            S    R
Sbjct: 559 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSPAPQR 606



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 59  KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 118

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 119 EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 167


>gi|325918634|ref|ZP_08180738.1| RNAse E [Xanthomonas vesicatoria ATCC 35937]
 gi|325535141|gb|EGD07033.1| RNAse E [Xanthomonas vesicatoria ATCC 35937]
          Length = 1243

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 212/655 (32%), Positives = 317/655 (48%), Gaps = 49/655 (7%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALV------------------------------NTGHKVGSDSQAPSYDKNIECVWQD 600
            +                                      +     AP  ++    V   
Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAPT 548

Query: 601 EALLPIPKSESLEDIQ--------------DNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
            A  P+        +                   + ES    R+    R  R        
Sbjct: 549 PAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAAESLPRPRQNDAGRNNRNERGGQRR 608

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            G  +   +  N    S +   +                  +    +   V  P+
Sbjct: 609 DGRDARNGNGGNQQRGSGNGANKERRDERRQPANGQNGQAAQAGAQAQQQVQVPK 663



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|221135370|ref|ZP_03561673.1| ribonuclease [Glaciecola sp. HTCC2999]
          Length = 968

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 202/645 (31%), Positives = 319/645 (49%), Gaps = 17/645 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I   +    E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I++ +K  Q +++QI KEERG KGAA+TT++SLAG Y VL
Sbjct: 70  LKEIARHYFPKNYTFEGRPNIRDAVKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E+  D + L+
Sbjct: 130 MPNNPRAGGISRRIEGDERSE-LKATLDQLELPKGMGLIVRTAGVGKSFEELAWDLKVLL 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W+ +  +A    AP L+++E N+I RAIRD   +D+ EII+     + +A   ++L+ 
Sbjct: 189 THWEAITAVAEERPAPFLIHQESNVIVRAIRDYLRRDVGEIIIDKPAIFEQALQHIELVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +A  V+ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFANRVKPYTGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TA  TNLEAA+EIARQLRLRDL GL+V+D+IDM   K+ R VE ++K+++  
Sbjct: 309 TKGGDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDYIDMSVNKHQREVENRMKDAVSG 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLEMSRQR+R S+ ES   VC  C G G +R   S+ALS+LR +EE
Sbjct: 369 DRARIQLGRISRFGLLEMSRQRLRPSLGESAHNVCPRCAGTGTVRGTESLALSVLRIIEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     +      DV  Y+LN+KR  + E E R  V + V+    L+   F IE+  
Sbjct: 429 ECIKDNTGQVEAQLPVDVATYILNEKRKALREMEERNKVEVLVLPNPNLSTPNFQIERRR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           P   +    +++          +      V ++E  L    +           ++ +  +
Sbjct: 489 PEDKVSGISYQLELAESNEQIQEAASAVPVQREEPALKGMIAPKAAPSPKPAEAKATPSL 548

Query: 628 IRK---------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           I             +   + +      +        +     +       + +D  ++N+
Sbjct: 549 IAGFIAWLTALFAPKPAPKAKGKGRGRNNNQRRQGQNRNRNRNQRNRNQGDKNDARDNNV 608

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                    ++ D      +      +    D         KRR+
Sbjct: 609 NAKDNRELHDSNDAKEGKSNPRRNTRNRKRHDNDEGDNGQQKRRQ 653



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI   Y+
Sbjct: 62 ADRHGFLPLKEIARHYF 78


>gi|253989176|ref|YP_003040532.1| ribonuclease E [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780626|emb|CAQ83788.1| rnase e, membrane attachment, mrna turnover, maturation 5s rna
           (rnas e) [Photorhabdus asymbiotica]
          Length = 1026

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 204/644 (31%), Positives = 315/644 (48%), Gaps = 25/644 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPNNYHPHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LEVP GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLEVPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD    DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLARQHITALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G V+I+ TEAL +ID+NS R+T
Sbjct: 251 DFTSKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGAVVIDTTEALTAIDINSSRAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  +   E R G V + +V   ++    F + +  
Sbjct: 431 ALKENTHQVHAIVPVQIASYLLNEKRQAVSAIERRQGDVGVVIVPNDQMQTPHFSVLRVR 490

Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
             + +    + +     + +  P  D   E    ++  +      +    Q    S ++ 
Sbjct: 491 KGEEVSTLSYLLPQFHETGAANPQEDIQPERKRPEQPAISAFALPTDAPAQAQQPSNKAK 550

Query: 626 GVIRKRRRRRRRRRPA-------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                +  + +  +P+             +   +     D     N    S +   +   
Sbjct: 551 EKKPNQPTQVKTEQPSLLSRFLTALKKIFSTEEETVQRKDNKPSGNDNRRSSERRNQRRQ 610

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +  +  +N       N      P      +  N   D     T
Sbjct: 611 HSRKDRDDNNLRDEQRNNRDRDEPRKNRNTQQKNGVQDNNPVNT 654



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|313667508|ref|YP_004047792.1| ribonuclease E [Neisseria lactamica ST-640]
 gi|313004970|emb|CBN86398.1| ribonuclease E [Neisseria lactamica 020-06]
          Length = 918

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 204/661 (30%), Positives = 308/661 (46%), Gaps = 36/661 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623
               +        ++    +       E          +               ++    
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 624 ------------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                                      +    R   RR      +   G   D    +  
Sbjct: 549 DSFKAWLKRIFGGTSETPAAAETSEKRISGGNRNAPRRTGSRRQNPRRGNRHDGGRAEVR 608

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
               F      +    H       +  + N        +        + +     ++   
Sbjct: 609 ETADFKGKAADNQAAEHETRNAKDNRRSRNRQNERNAAAEAGNPEVRTLAAATPSESETR 668

Query: 720 K 720
            
Sbjct: 669 P 669



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 62 TDRHGFLPFKEVSRSYF 78


>gi|188577475|ref|YP_001914404.1| ribonuclease E [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521927|gb|ACD59872.1| ribonuclease E [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1238

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   ++G              +       +A L IP   ++  I+ +  +         
Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 544

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P  I      + G +   E  
Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 604

Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722
           +         +  +          + +   K+ R  +R+
Sbjct: 605 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 643



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|84624583|ref|YP_451955.1| ribonuclease E [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368523|dbj|BAE69681.1| ribonuclease E [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 1240

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   ++G              +       +A L IP   ++  I+ +  +         
Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 544

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P  I      + G +   E  
Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 604

Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722
           +         +  +          + +   K+ R  +R+
Sbjct: 605 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 643



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|209885113|ref|YP_002288970.1| ribonuclease E (RNase E) [Oligotropha carboxidovorans OM5]
 gi|209873309|gb|ACI93105.1| ribonuclease E (RNase E) [Oligotropha carboxidovorans OM5]
          Length = 1123

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 285/563 (50%), Positives = 375/563 (66%), Gaps = 1/563 (0%)

Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171
            T       E  +  A    + +++S    +  V S   D       +   + +RQY IQ
Sbjct: 365 ETHEEHADAEHASEDAASDSDEDDDSDGEEDEQVESVGGDDALEEVPERTFRPRRQYKIQ 424

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
           EVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G  ISRKIT+  DR  
Sbjct: 425 EVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRNR 484

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
           LK++ + L+VP GMG+ILRTAGASRTK EIKRDFEYL+R+W+ VR+L L S AP LVYEE
Sbjct: 485 LKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEE 544

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
           G+LIKR++RDLY K+I E++VSGE+GY EA+DFMK+LMPS  R V+ Y D  P+F R G+
Sbjct: 545 GSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKMLMPSNVRAVKLYRDNQPLFSRMGV 604

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E QLD++    VTL S GY++INQTEALVSIDVNSGRSTREH IEDTAL+TNLEAAEE+A
Sbjct: 605 ESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVA 664

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+QVG IS+FGLLEMSRQR
Sbjct: 665 RQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQR 724

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
           IR+SVLES+T+ C  C G G++RS +SVAL +LRS+EE L++   HN  V T +DV LY+
Sbjct: 725 IRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEEQLMKSGTHNYTVRTRTDVALYV 784

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           LN KR  + + E  F V++ V+    +  +  F IE+G  V  +      + +   A   
Sbjct: 785 LNHKRGHLRDLEEAFQVTLAVIADPTVGGQQAFVIERGEQVHTVEAAKALLAARVAAQPV 844

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           +       ++          +     +   ++       +RRRRRRR R   +  +A   
Sbjct: 845 EVEEFDAEEEFFEEETETESAENGDTETADAQGENEDGNRRRRRRRRGRGRGEGREASAQ 904

Query: 651 SDVSSIQNVIDDSFDMYMEPSDI 673
           S         D   +   +  + 
Sbjct: 905 SAEGEASTGEDTQAEASEDGEED 927



 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/93 (77%), Positives = 82/93 (88%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFES  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 107 MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE 166

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93
           YGGNRHGFL F EIHPDYYQIP +DRQAL++  
Sbjct: 167 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAD 199


>gi|167563552|ref|ZP_02356468.1| ribonuclease E [Burkholderia oklahomensis EO147]
          Length = 551

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEEAKPRQEAAVKGITPERPAPSAAPQRQ 547



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|300723638|ref|YP_003712943.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630160|emb|CBJ90797.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation
           [Xenorhabdus nematophila ATCC 19061]
          Length = 1052

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 207/628 (32%), Positives = 315/628 (50%), Gaps = 10/628 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++++K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYHSHGRPNIKDILKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LEVP GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRIE-LKEALSSLEVPEGMGLIVRTAGVGKSAEALQGDLNFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD    DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSHPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLARQHITALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  ++ Y    P+F    IE Q++S  Q EV LPS G V+I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGSVVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +       +  YLLN+KR  +   E R  GV + +V   ++    F + +  
Sbjct: 431 ALKENTYQVHAIVPVQIASYLLNEKRKAVSAIEHRQGGVGVVIVPNDQMQTPHFSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + +    + +       +   N++   Q E   P   + S  DI     +  +     
Sbjct: 491 KGEEISALSYLL--PQLHETEMANVQDDSQHERKRPEQPAISTFDIPAESPAPTAAKATV 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           K + ++            G+ S   S    +    +           +  +N       N
Sbjct: 549 KLKEKKPADNSQNQTARPGLFSRFFSALKKMFSGEEEKQPLEQNKKSSGNDNRRSSERRN 608

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                      E E+ N+      +K R
Sbjct: 609 PRRQNQRRDRNESETRNNRERDEQRKGR 636



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|289209150|ref|YP_003461216.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix]
 gi|288944781|gb|ADC72480.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix]
          Length = 504

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 154/567 (27%), Positives = 272/567 (47%), Gaps = 68/567 (11%)

Query: 1   MA-NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M   ++L++ +  +E+RV ++ +  + EL  E   ++ I GNIY  +V RV P + AAFV
Sbjct: 1   MTGTEILMNVT-PQESRVALVDNGVLTELHLERTRRRGIVGNIYKGRVVRVLPGMDAAFV 59

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
                        +I          DR A L  S++A  + E +                
Sbjct: 60  -------------DIG--------LDRTAFLHASDVAPVEREEL---------------- 82

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
                                       +      G          R   I+E+++  Q 
Sbjct: 83  ----------------------------DGHGSANGPGNGGGNGSGRAETIRELLREGQD 114

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL-KEIARG 238
           +LVQ++K+  G KGA +TTY+++  R+ VLMPN S     +R        +   K  A  
Sbjct: 115 VLVQVIKDPLGTKGARLTTYITVPSRHLVLMPNQSNVGVSTRIEDEGSRSRLREKVEALR 174

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
            E+    G I+RTA        ++ D  +L ++WD+++  A  + A   VY +  L+ R 
Sbjct: 175 NEIAPQHGFIVRTAAELVDDEALENDTAFLKKVWDSIQMAAAEASAGEEVYADLPLVLRI 234

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           +RD+   +I  I +   + Y++  +F+   +P     +  Y    PIF    +E ++   
Sbjct: 235 LRDMVGVEIERIRIDSRETYQKVCEFVAQYLPELVGRIEHYPGERPIFDLFNVEEEIQRA 294

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
            + +V L S GY+I +QTEA+ ++D+N+G       +E+T  +TNLEAA+ I RQLRLR+
Sbjct: 295 LERKVELKSGGYLIFDQTEAMTTVDINTGGFVGHRKLEETIFKTNLEAAQAIGRQLRLRN 354

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           L G+I++DFIDM++ ++ R V + L+++L++D  + Q+  +S  GL+EM+R+R R S+  
Sbjct: 355 LGGIIIIDFIDMQDDEHKRQVIRALEKALERDHVKTQICDVSPLGLVEMTRKRTRESLEH 414

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
              + C  C G GY++S  +V   + R +   + QY A  + V    +V+  LL+++ A+
Sbjct: 415 QLCEPCPTCAGRGYLKSAETVCYELFREILREVRQYDARELRVLASQNVIDLLLDEESAS 474

Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565
           + E ++  G+ I   +      + F +
Sbjct: 475 LAELQSFVGIPIRFQVETLYTQEQFDV 501


>gi|240140398|ref|YP_002964877.1| putative ribonuclease E or G [Methylobacterium extorquens AM1]
 gi|240010374|gb|ACS41600.1| putative ribonuclease E or G [Methylobacterium extorquens AM1]
          Length = 1054

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 290/547 (53%), Positives = 373/547 (68%), Gaps = 1/547 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 353 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 412

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKE+   L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL 
Sbjct: 413 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 472

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE  YREAKDFM++LMP  +++V+ Y
Sbjct: 473 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 532

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            DP PIF R G+E QLD++  T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 533 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 592

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNLEAAEE+ARQ+RLRDLAGL+V+DFIDMEEK+NNR+VEK+L E+LK DRAR+QVG I
Sbjct: 593 LKTNLEAAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRI 652

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQRIR+ VLES++  C +C G+G++R+ SSVAL ILRS+EE LL+  +HN+
Sbjct: 653 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNV 712

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578
           ++ T ++  LY+LNQKRA + + E RF V+I +     L A   F +E+G P        
Sbjct: 713 VLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPV 772

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
             V + + +P Y+         E+         +E   +    E       +    RRRR
Sbjct: 773 TGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRR 832

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           R       A    +  +      DS D   + ++  +                 + P  +
Sbjct: 833 RRRRRGGRASGEGEARARDEDGTDSEDGAEDGAEDGDDAPDSEPEAVEAALGAAAEPDET 892

Query: 699 TPEMESS 705
             + +++
Sbjct: 893 ASDADAN 899



 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 89/142 (62%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y
Sbjct: 3   NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F EIHPDYYQIP +DR AL++     + +     +             +  
Sbjct: 63  GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122

Query: 122 EVAPIANFSQETEEESIISANN 143
             +   +  +  E  S   + +
Sbjct: 123 RGSRPDDTVKSQEAVSDAGSED 144


>gi|209517578|ref|ZP_03266417.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160]
 gi|209501991|gb|EEA02008.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160]
          Length = 489

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 135/566 (23%), Positives = 223/566 (39%), Gaps = 81/566 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LI+ +  +ETRV +++   V+EL  E    +   GN+YL KV RV P +Q+AF+D
Sbjct: 1   MNEEILINVT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   +I HP             +      QT  + +   V  G   +     
Sbjct: 60  IGLERAAFLHVADIWHPR------------IAGEAQHQTPHQPIEKIVFEGQTLMVQVVK 107

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
                  A  S +               ++   +    E   +  + +            
Sbjct: 108 DPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARL----------- 156

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
                                      + ++P   KG  I R I      + L      L
Sbjct: 157 ---------------------------TAVLPADEKGGYIVRTIAEDATSEELAADVAYL 189

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                   IL  A        + +D     R+  +             V +E + I+   
Sbjct: 190 RKTW--ATILSQAQRMPPTSLLYQDLNLAQRVLRDF------------VNDETSRIQVDS 235

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           R+ +               +   DF     P+ +  +  Y    P+F    IE ++    
Sbjct: 236 RETH---------------QMLADFAAEFTPAVSSKLHHYTGERPLFDLYNIEAEIQRAL 280

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L
Sbjct: 281 SRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 340

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDME  ++   V  +LK++L +DR RV V   S  GL+EM+R+R R S+   
Sbjct: 341 GGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV 400

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C+G G +++  +V   +LR +     Q+      V     V+   L ++   +
Sbjct: 401 LCEPCPVCQGKGQVKTARTVCYDVLREILRESRQFNPREFRVVAAQQVIDLFLEEESQHL 460

Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565
                  G  +++ +   L+ + + I
Sbjct: 461 AMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|167903652|ref|ZP_02490857.1| ribonuclease E [Burkholderia pseudomallei NCTC 13177]
          Length = 557

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|329960939|ref|ZP_08299218.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328532225|gb|EGF59029.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 524

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 150/580 (25%), Positives = 266/580 (45%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL ++ ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +                                       +SL
Sbjct: 60  VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ LS AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W++       +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIHVNNEAVFHEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              V+  S  Y+II  TEAL  +DVNSG   +    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRIKNANGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  +  Y+     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGLVSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPDQKLAFLEYIFYDLQGEEIDMKEE 520


>gi|319638922|ref|ZP_07993680.1| ribonuclease E [Neisseria mucosa C102]
 gi|317399826|gb|EFV80489.1| ribonuclease E [Neisseria mucosa C102]
          Length = 963

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 203/627 (32%), Positives = 313/627 (49%), Gaps = 9/627 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MPS
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +        ++    +       E          +      +        ++++  
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKAARPEPAVKGVRHTQPAPTVAPEKKASWW 548

Query: 628 IRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   +R           A   ++  +  N   +              N   +G+   
Sbjct: 549 DSFKAWLKRIFGGEPAPAAVAQEPAEKRTANNRGQNGDRRSSSRRQNPRRNNKHDGSKVE 608

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713
               +         E +S+ S +D   
Sbjct: 609 VREVNAEAADSKFEESKSNESRNDERK 635



 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y++
Sbjct: 62 TDRHGFLPFKEVSRSYFR 79


>gi|148255582|ref|YP_001240167.1| ribonuclease E [Bradyrhizobium sp. BTAi1]
 gi|146407755|gb|ABQ36261.1| RNAse E [Bradyrhizobium sp. BTAi1]
          Length = 1070

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 298/607 (49%), Positives = 393/607 (64%), Gaps = 3/607 (0%)

Query: 98  TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157
            D   VA+    G+VTI           +A+   + E+   I          +DV    P
Sbjct: 287 ADLSPVAEHDDDGEVTIVPGDDNGVEPAVADHDDDDEDGEEIEEEVVESVGGDDVLEEVP 346

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
           E    + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G 
Sbjct: 347 ERT-FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGG 405

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
            ISRKIT+  DR  LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+RLW+ VR+
Sbjct: 406 GISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGANRTKPEIKRDFEYLLRLWETVRD 465

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
           + L S AP LVYEEG+LIKR++RDLY K+I EI+V+GE GYREA DFMK+LMP+  R V+
Sbjct: 466 MTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEILVAGEAGYREAHDFMKMLMPTNVRAVK 525

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
           QY D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGR+TREH IED
Sbjct: 526 QYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIED 585

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           TAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNRSVE+KL + L++DRAR+QVG
Sbjct: 586 TALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRSVERKLSDCLRQDRARIQVG 645

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
            IS+FGLLEMSRQRIR+SVLES+T+ C +C G G++RS SSVAL +LRS+EE L++   H
Sbjct: 646 RISHFGLLEMSRQRIRASVLESSTEPCAHCGGTGHVRSVSSVALQLLRSLEETLMKGATH 705

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVN 576
           N++V T ++V LY+LN KR  + + E  F VS+ V+    +   + F I++G  V  L  
Sbjct: 706 NLVVRTRTEVALYVLNHKRGHLRDLENSFKVSLAVIADPNVSGQQSFIIDRGEQVHTLEA 765

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
               + + + AP    + E   +DE      +SE   +  + +  E +     +R   RR
Sbjct: 766 AKALLAAQASAPPLVAD-EVYDEDEPFDIETESEVETEETEGLSEEAAEASETERDGARR 824

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           +RR            + +       +S ++             E+        +     P
Sbjct: 825 KRRRRRRGRGGNEAREATPEGATAAESLEVGTAAELPAEDAETEDEDSDEQPAFASGDQP 884

Query: 697 VSTPEME 703
                 E
Sbjct: 885 SDQANGE 891



 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 101/195 (51%), Gaps = 6/195 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E  +++ ++           
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEERAHREAEEESENRSNRRRNRHRSSRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                            I +A+     + E  +G                          
Sbjct: 121 RGSGERVQSEI------IEAADASQAPHGETHEGDHGAFEAPDAAYAQDNHPADDAGAET 174

Query: 181 LVQIVKEERGNKGAA 195
             Q          A 
Sbjct: 175 PAQTAGFAEAPLEAP 189


>gi|237653102|ref|YP_002889416.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
 gi|237624349|gb|ACR01039.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
          Length = 1061

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 213/657 (32%), Positives = 305/657 (46%), Gaps = 44/657 (6%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I +    E  + I        E S+ +A  D  ++      
Sbjct: 10  QAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDYGADRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  I+E +K  Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP
Sbjct: 70  FKEISRSYFQPGADAKASIKEALKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR++      + L+E    L+VP GM +I RTA   R+  E++ D  YL++L
Sbjct: 130 NNPRGGGVSRRVEGDERAE-LRENMDQLDVPQGMSLIARTAAIGRSAEELQWDLNYLLQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A       L+Y+EG+L+ RAIRD +  DI EI++  +  + +A  FM  +MP 
Sbjct: 189 WTAIEGAAQGQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFEQATQFMAHVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V++Y D  P+F R  IE Q++S +  +V LPS G V+I+ TEALVSIDVNSGR+T+
Sbjct: 249 NVARVKRYSDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSIDVNSGRATK 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA +TN EAA+EIARQLRLRDL GLIV+DFIDME  KN R VE +L+++L+ DR
Sbjct: 309 GSDIEETAFRTNCEAADEIARQLRLRDLGGLIVIDFIDMESAKNQREVENRLRDALRHDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ G IS FGLLE+SRQR+R ++ E++   C  C G G+IRS  S AL I+R +EE  
Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCNGTGHIRSTESSALHIVRILEEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     + +    DV  +LLN+KR  I   E R  V + +V    L      I +    
Sbjct: 429 MKDNTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPAHEIIRLRHD 488

Query: 572 Q--ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ------------- 616
           Q               +    D  +     +    P    + +   Q             
Sbjct: 489 QLNTEDIALASYQMVQKPVEEDTRLPSKANERPARPEAAVKGIAPAQPAPMAAPEPAPAS 548

Query: 617 -------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
                                                  +R  R R   + +    G  +
Sbjct: 549 APAPAAPEPKGLIARIMGWFSAGKGAAEPVPAPVVEETPKREARPRGERSGEGRRNGGSN 608

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
                +   D         S        E       E  +           E    +
Sbjct: 609 GGRGRRGERDGEAQPSTRGSRAERGESTERPQRVAAERAERPERAERPERAERPERA 665



 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD ES  K++ K NIY A +TR+EPSL+AAFVDYG
Sbjct: 2   KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+Q P +D +A +KE+     +     +    G+
Sbjct: 62  ADRHGFLPFKEISRSYFQ-PGADAKASIKEALKEGQELIVQVEKDERGN 109


>gi|90424351|ref|YP_532721.1| ribonuclease [Rhodopseudomonas palustris BisB18]
 gi|90106365|gb|ABD88402.1| RNAse E [Rhodopseudomonas palustris BisB18]
          Length = 1029

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 271/480 (56%), Positives = 354/480 (73%), Gaps = 5/480 (1%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
               +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+
Sbjct: 297 EEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 356

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKIT+  DR  LKE+ + L+VP GMG+ILRTAGASRTK EIKRDFEYL+R+W+ 
Sbjct: 357 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWET 416

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM++LMPS  R
Sbjct: 417 VRDMTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMQMLMPSNVR 476

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+QY D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGRSTREH 
Sbjct: 477 AVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 536

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+K+ + L++DRAR+
Sbjct: 537 IEDTALKTNIEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKISDCLRQDRARI 596

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           Q+G IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS +SVAL +LR +EE L++ 
Sbjct: 597 QIGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVASVALQLLRGLEEILMKG 656

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573
             HN+IV T +DV LY+LN KR  + + E  F VS+ V+    +   + F I++G  V  
Sbjct: 657 ATHNLIVRTRNDVALYVLNHKRGHLRDLEDSFRVSLTVIADPTVTGQQSFVIDRGEQVHT 716

Query: 574 LVNTGHKVGSD----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           L      + +        P    + +  ++ EA +   ++  L D Q      E+     
Sbjct: 717 LEAAKALLAAQVAAFPPQPDEPYDDDDQFEFEAEIETDETVGLADDQQGAEPGETEAEAE 776



 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/154 (48%), Positives = 97/154 (62%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR AL++    A  ++E  +++ ++       +   
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALIEADERAHREAEEESENRSNRRRPRHRNSRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
                           +  + + D      D + 
Sbjct: 121 RGNGERVQSDVIDAVATDGAQSEDHEHGHPDQQQ 154


>gi|21242846|ref|NP_642428.1| ribonuclease E [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108335|gb|AAM36964.1| ribonuclease E [Xanthomonas axonopodis pv. citri str. 306]
          Length = 1221

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 211/618 (34%), Positives = 321/618 (51%), Gaps = 9/618 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +    +G              +         +   P   S++  Q   V EE+   +  
Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAP 547

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                            GVV  +  I   ++    +   P         + G +  +E  
Sbjct: 548 VAAPVPVVTVPIPAPVTGVVGWLKRIFGGVEP---VAPAPESTPRPRQNDAGRNNRSERG 604

Query: 691 DVSIPPVSTPEMESSNSS 708
           +         +  +  +S
Sbjct: 605 ERGGQRRDGRDARNGGNS 622



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|171463175|ref|YP_001797288.1| ribonuclease, Rne/Rng family [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192713|gb|ACB43674.1| ribonuclease, Rne/Rng family [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 865

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 205/598 (34%), Positives = 309/598 (51%), Gaps = 13/598 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITHIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   I++ ++  Q ++VQ+ KEERG KGAA+T+++SLAGRY VLMPN
Sbjct: 72  EVARSYFKEGIDVRNASIKDALREGQEIIVQVEKEERGQKGAALTSFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    LEVP G+ +I RTAG  R   E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LREAMSQLEVPDGISIIARTAGIGRDATELQWDLSYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E A  + AP L+Y E NL+ RAIRD +  DI EI++  +  Y +A  FM ++MP  
Sbjct: 191 KAIDEAAKGNSAPLLIYLESNLVIRAIRDYFQPDIGEILIDTDDIYEQAAAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y+D  P+F R  IE Q+++     V LPS G ++I+ TEALVS+DVNS R+TR 
Sbjct: 251 LPRVKRYQDDVPLFSRFQIEHQIETACSRTVPLPSGGAIVIDHTEALVSVDVNSARATRG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+EIARQ RLRDL+GLIV+DFIDME  K  + VE +L+++L+ DRA
Sbjct: 311 SDIEETATRTNLEAADEIARQARLRDLSGLIVIDFIDMESSKAQKDVENRLRDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+EMSRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISKFGLMEMSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KRA +++ E RF V++ +V    L    + +E+     
Sbjct: 431 KENTAAIHTQVPVEVAAFLLNEKRAEVIKIETRFKVNVLMVPNKHLETPHYKLERLRHDD 490

Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             L +         +A    +    V + +A + +    +++ I     +          
Sbjct: 491 PRLDDQKASYVMAEEAARELETDTTVSKKDADVKVRPEAAVKGITPTQPA-------PIS 543

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           + R  R   A      G   +          + +    PS+    N   N       N
Sbjct: 544 QPRPARTEKAKAVSTTGGFFEFIKSLFGSSPAVEEKPAPSNNRGRNQGRNSDRNRGRN 601



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 62/108 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +T +EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITHIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
             RHGFLPF E+   Y++     R A +K++     +     +    G
Sbjct: 62  EERHGFLPFKEVARSYFKEGIDVRNASIKDALREGQEIIVQVEKEERG 109


>gi|225075562|ref|ZP_03718761.1| hypothetical protein NEIFLAOT_00575 [Neisseria flavescens
           NRL30031/H210]
 gi|224953107|gb|EEG34316.1| hypothetical protein NEIFLAOT_00575 [Neisseria flavescens
           NRL30031/H210]
          Length = 984

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 205/629 (32%), Positives = 314/629 (49%), Gaps = 11/629 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 34  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 93

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 94  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 153

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 154 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 212

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 213 WQAIEEAGKAHHYPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVSEFMSYVMPG 272

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 273 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 332

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 333 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 392

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 393 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 452

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 453 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 512

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +        ++    +       E          +               ++++  
Sbjct: 513 DVEGDGEPSYKRVAEPEEDESAKPFGGERAKAARPEPAVKGVRHTSPAPTAAPGKKTSWW 572

Query: 628 IRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   +R           A   ++  +  N   +S             N   +G+   
Sbjct: 573 DSFKAWLKRIFGGEPAPAAVAPEPTEKRTANNRSQNSNRRSNSRRQNPRRNNKHDGSKVE 632

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               +     V +   E+ ++ S    +K
Sbjct: 633 VREVNA--EAVDSKFEENKSNESRNDERK 659



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 26  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 85

Query: 63  GNRHGFLPFLEIHPDYYQ 80
            +RHGFLPF E+   Y++
Sbjct: 86  TDRHGFLPFKEVSRSYFR 103


>gi|167739573|ref|ZP_02412347.1| ribonuclease E [Burkholderia pseudomallei 14]
 gi|167846679|ref|ZP_02472187.1| ribonuclease E [Burkholderia pseudomallei B7210]
          Length = 555

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|39935516|ref|NP_947792.1| ribonuclease Rne/Rng family [Rhodopseudomonas palustris CGA009]
 gi|39649368|emb|CAE27891.1| putative ribonuclease E [Rhodopseudomonas palustris CGA009]
          Length = 1051

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 297/585 (50%), Positives = 394/585 (67%), Gaps = 6/585 (1%)

Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171
           V   ++   +          E E++   +  + V S   D       +   + +RQY IQ
Sbjct: 271 VEGEHEVETDSDTEAEAEDDEEEDDEEEAEEDVVESVGGDDVLEEVPERAFRPRRQYKIQ 330

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
           EVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G  ISRKIT+  DR  
Sbjct: 331 EVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSR 390

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
           LKE+ + L+VP GMGVILRTAGASRTK EIKRDFEYL+R+W+ VR++ LNS AP LVYEE
Sbjct: 391 LKEVVQDLDVPEGMGVILRTAGASRTKPEIKRDFEYLIRMWETVRDVTLNSQAPKLVYEE 450

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
           G+LIKR++RDLY K+I E++V+GE GYREA+DFM +LMPS  R V+ Y D  P+F R G+
Sbjct: 451 GSLIKRSLRDLYNKEIDEVLVAGEAGYREARDFMHMLMPSQVRAVKLYRDGQPLFSRMGV 510

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E QLD++    V L S GY++INQTEALVSIDVNSGRSTREH IEDTAL+TN+EAAEE+A
Sbjct: 511 ESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNMEAAEEVA 570

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+QVG IS+FGLLEMSRQR
Sbjct: 571 RQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQR 630

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
           IR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++   HN+IV T +DV LY+
Sbjct: 631 IRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEVLMKGATHNLIVRTRTDVALYV 690

Query: 532 LNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG---HKVGSDSQA 587
           LN KR  + + E  F VS++V+    +   + F I++G  V  L           + S A
Sbjct: 691 LNHKRGHLRDLETGFRVSLSVLADPTVSGQQSFVIDRGEQVHTLETAKALLAAQIAASPA 750

Query: 588 PSYDKNIECVWQDEALLPIPKSES-LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
           P  +   +  +  EA +   ++    ED        ES G  R+RRRRRRR     +  +
Sbjct: 751 PLDEPEDDDGYDFEAEIETDETVGLAEDQGSEAGESESEGRKRRRRRRRRRSGEPREAAE 810

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           AG V +    Q  + +  +   E  +       ++ A    +  +
Sbjct: 811 AGAVGEDGE-QPFVSEGVEQVGEADEGDEAGEDDSDAEARADQGE 854



 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 98/166 (59%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E   +  +    +    H  
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSSRRRSRHRSHRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
                            + +      ++  +          ++   
Sbjct: 121 RNNGERVQSEIVEAATDVAAEQPHEAADHHEAHEAGAHAEAERLMH 166


>gi|218767111|ref|YP_002341623.1| ribonuclease E [Neisseria meningitidis Z2491]
 gi|121051119|emb|CAM07390.1| ribonuclease E [Neisseria meningitidis Z2491]
          Length = 919

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 207/668 (30%), Positives = 316/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEENESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRHSKREGSKVEVREV 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI-------VKK 715
           +     + +         NG     E  D +    +  E++  N               +
Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNVQPAAPVADAAPSETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 VQTGKRRR 676



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|262198665|ref|YP_003269874.1| ribonuclease, Rne/Rng family [Haliangium ochraceum DSM 14365]
 gi|262082012|gb|ACY17981.1| ribonuclease, Rne/Rng family [Haliangium ochraceum DSM 14365]
          Length = 543

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 168/565 (29%), Positives = 276/565 (48%), Gaps = 55/565 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  +L+  +   ETRV V+ +  + E   ES+  + I GNIY  +V+RV P +QA    
Sbjct: 1   MSENLLVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQA---- 56

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F+++ P                       +   A  +   D+    D   
Sbjct: 57  ---------AFVDLGP-----------------------TVERAGFLYVADILGAAD--- 81

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                         E  + +  +    +  +          K+      I++++K  Q +
Sbjct: 82  --------------ERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDLLKADQEV 127

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T YLSL GRY+V MP   +   +SR+I++  +R+ L++I   + 
Sbjct: 128 LVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAV-QQVGVSRRISSEAERRRLRKIVTSVG 186

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
             +G G I+RTA       EI+ D +YL+RLW  ++    +   P L+Y + +L+ R IR
Sbjct: 187 HKSG-GFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLVLRTIR 245

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL   D  EI++  E+ Y  A+ F    +P     ++QY    PIF   G+E +L +   
Sbjct: 246 DLLRADTKEIVIDDEEQYDRARKFTMAFLPPAVDRIKQYRGRQPIFDHYGVEAELRTALG 305

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S G ++I+Q EAL +IDVN+G    +  +E+T  + N+EA  E+ARQLRLR++ 
Sbjct: 306 RRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQLRLRNIG 365

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV+DF+DM+++ N + V   L ++L  DR+R  +  IS  GL+EM+R+R R S+ +  
Sbjct: 366 GIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRESLNQLL 425

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T+ C  C G+G ++S ++VA  +LR V        A +I V     V   L   +R  + 
Sbjct: 426 TEACPTCSGSGVVKSTTTVAHEVLREVRRLGSHAEADSIDVECAPVVADLLDKYERGYLD 485

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E +F   + +          + +
Sbjct: 486 ELEKKFQKKVVIQSNGGYRPDQYQV 510


>gi|227111671|ref|ZP_03825327.1| ribonuclease E [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 1111

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 204/665 (30%), Positives = 310/665 (46%), Gaps = 59/665 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++S+++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 428 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMQTPHYSVVRVR 487

Query: 570 PVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPI---------------------- 606
             +      + +           ++ + + + +   P                       
Sbjct: 488 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETAPSIAKAAP 547

Query: 607 ---------------------------PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
                                        +    D  D+  +EE      +R  RR  RR
Sbjct: 548 AAAKPAEVAQPGLVSRLFSALKSVFASEPAVKAADSVDDKKAEEEKSTEGQRPERRNSRR 607

Query: 640 PATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
              +  D G   +  +       +  D            + +  A    E       P  
Sbjct: 608 QGNNRRDRGSRDNRDNRDNRDNREQRDEQRRNKRQNEEAITDTRAAENAEKSSSEEQPRR 667

Query: 699 TPEME 703
            P  E
Sbjct: 668 EPRAE 672



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75



 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 2/137 (1%)

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
                   I      +    +  +     +  +  +      + +A         ++D  
Sbjct: 639 NKRQNEEAITDTRAAENAEKSSSEEQPRREPRAERQRRRQDDRRQAPTEAKAQPVIDDAD 698

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--VVSDVSSIQNVIDDSFDMYMEPSDIT 674
           D+   ++    +  RR+RR+  +      DA    +SD ++      +    Y++PSD  
Sbjct: 699 DSAAEQDKPTQVMPRRQRRQLTQKVRVQSDAQQDTLSDSTAPVAAPSEQVQTYVKPSDAA 758

Query: 675 NHNLLENGAHGFTENYD 691
             N   +         +
Sbjct: 759 VDNNEVDNEQNDANRAN 775


>gi|254672160|emb|CBA04975.1| ribonuclease E [Neisseria meningitidis alpha275]
          Length = 927

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 207/668 (30%), Positives = 316/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPKPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRHSKREGSKVEVREV 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI-------VKK 715
           +     + +         NG     E  D +    +  E++  N               +
Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNVQPAAPVADAAPSETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 VQTGKRRR 684



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87


>gi|170751038|ref|YP_001757298.1| ribonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170657560|gb|ACB26615.1| ribonuclease, Rne/Rng family [Methylobacterium radiotolerans JCM
           2831]
          Length = 1043

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 282/464 (60%), Positives = 355/464 (76%), Gaps = 1/464 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+ ++RQY IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 338 RPRHYRRQYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 397

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKE+ + LEVP GMGVILRTAGASR+K EI RDFEYLMRLW++VREL 
Sbjct: 398 SRKITSAADRKRLKEVVQDLEVPEGMGVILRTAGASRSKPEIARDFEYLMRLWESVRELT 457

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L S+AP LVYEEG+LIKRAIRDLY KD+ E++V+GE  YREAKDFM++LMP  +++V+ Y
Sbjct: 458 LTSMAPALVYEEGSLIKRAIRDLYNKDLDEVLVAGEDAYREAKDFMRMLMPGQSKVVKPY 517

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            D  PIF R G+E QLD++  T V+L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 518 RDSTPIFARFGVEQQLDAMFSTHVSLKSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 577

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKL E LK DRAR+QVG I
Sbjct: 578 LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLNECLKNDRARIQVGRI 637

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQRIR+ VLES++  C +C G+G++R+ +SVAL ILRS+EE LL+  +HN+
Sbjct: 638 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATASVALHILRSIEEVLLKSASHNL 697

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578
           ++ T +++ LY+LNQKR  + E E RFGV+I +     L A   F +++G P Q      
Sbjct: 698 VLRTRTEIALYILNQKRGHLRELEVRFGVTITIAADERLAATTPFQLDRGEPAQRAEGPV 757

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
             V + + +P+ + + E    DEA          ++ +     +
Sbjct: 758 TGVRAQAISPAMEFDDEDEEADEAEAETESEGEADEGRAEARED 801



 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 102/168 (60%), Gaps = 1/168 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA H EETRVV +  +RVEE DFE+ +++Q++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MANKMLIDAMHPEETRVVTVHGSRVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+E      +     +               
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPLADRQALLEEEARDAEEHREREERRRRSSSRRSRGRRA 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
           E  A  A+ +  + E++  +A  +  + V +  G  P   P       
Sbjct: 121 EARARGADETV-SAEDTHAAAEGEDQAEVRNESGIDPAVQPDTLAENP 167


>gi|166712252|ref|ZP_02243459.1| ribonuclease E [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 1236

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 214/639 (33%), Positives = 326/639 (51%), Gaps = 16/639 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 7   QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVEKEERGNKGAALTTFISLAGRYMVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 485

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   + G              +       +A L IP   ++  I+ +  +         
Sbjct: 486 NELGEDNGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAA 541

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P  I      + G +   E  
Sbjct: 542 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 601

Query: 691 DVSIPPVSTPEME-------SSNSSSDPIVKKTRWWKRR 722
           +         +             + +   K+ R  +R+
Sbjct: 602 ERGGQRRDGRDARHGGHSGNQQRGNGNGANKERRDERRQ 640



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 62/107 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  DY+Q      ++ ++E      +     +    G+
Sbjct: 61  RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVEKEERGN 107


>gi|316934393|ref|YP_004109375.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris DX-1]
 gi|315602107|gb|ADU44642.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris DX-1]
          Length = 1053

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 291/566 (51%), Positives = 387/566 (68%), Gaps = 5/566 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
           I   D      +          +   +          + E++   +  + V S   D   
Sbjct: 258 IEGNDEAEDGHEAHDDHAEHEPETDTDTETEAGAEDDDEEDDEEDAEEDVVESVGGDDVL 317

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
               +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+
Sbjct: 318 EEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 377

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKIT+  DR  LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+R+W+ 
Sbjct: 378 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKPEIKRDFEYLIRMWET 437

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VR++ L S AP LVYEEG+LIKR++RDLY K+I E++V+GE GYREA+DFM++LMPS  R
Sbjct: 438 VRDVTLKSQAPMLVYEEGSLIKRSLRDLYNKEIDEVLVAGEAGYREARDFMQMLMPSQVR 497

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+ Y D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGRSTREH 
Sbjct: 498 AVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 557

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+
Sbjct: 558 IEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARI 617

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++ 
Sbjct: 618 QVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEVLMKG 677

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573
             HN+IV T +DV LY+LN KR  + + E  F VS++V+    +   + F I++G  V  
Sbjct: 678 ATHNLIVRTRTDVALYVLNHKRGHLRDLETGFRVSLSVLADPTVSGQQSFVIDRGEQVHT 737

Query: 574 LVNTG---HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIR 629
           L           + S AP  +   +  ++ EA +   ++  L D Q +   + +S    R
Sbjct: 738 LETAKALLAAQIAASPAPIDEPEDDDGYEFEAEIETDETVGLADEQASEAGDTDSENRKR 797

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSS 655
           +RRRRRRR     +  +AG V +   
Sbjct: 798 RRRRRRRRSGEPREAAEAGAVCEDGE 823



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 98/161 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E  ++  +    +    H  
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEQRSSRRRSRHRSHRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161
                             + A  D    V +       D  
Sbjct: 121 RNNGERVQSEIVETSADQLDATVDQPDAVVEHHEAQETDAY 161


>gi|167919897|ref|ZP_02506988.1| ribonuclease E [Burkholderia pseudomallei BCC215]
          Length = 560

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|167816776|ref|ZP_02448456.1| ribonuclease E [Burkholderia pseudomallei 91]
          Length = 552

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|294668134|ref|ZP_06733241.1| ribonuclease E [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309842|gb|EFE51085.1| ribonuclease E [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 960

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 206/645 (31%), Positives = 320/645 (49%), Gaps = 28/645 (4%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQEV+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQEVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK+    L+VPAGM +I RTAG  R+  E++ DF+YL++L
Sbjct: 130 NNPRGGGVSRRIEGDERQE-LKDAMAELDVPAGMSLIARTAGIGRSVEELQWDFDYLLKL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  E+ + E  +FM  +MP+
Sbjct: 189 WRAIEEAGEAHREPYLLFMESSLLIRAIRDYFRPDIGEILVDNEEVHTEISEFMSYVMPN 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NVSRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRSD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKN----IECVWQDEALLPIPKSESLEDIQDNIVSE----- 622
               +        ++  + D       E V        +   +  +              
Sbjct: 489 DVEEDGAPSYKRVAEPEADDNAKPFGNERVKASRPEPAVKGVKHNQPAPVVAERPAGWWD 548

Query: 623 ---------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
                          E      +++     R  ++        +  S+   + +++    
Sbjct: 549 KFKAWFKGLFGGGTMEQPQEESRKQSSGNSRHSSSRRRGNRRGAGRSAGGEMRNNASRSD 608

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
           +  ++ T  +  +  +                   E  N +    
Sbjct: 609 VADAEETKTDNAKTDSRRSNGRRGADSRNADGRNAEGRNGNRRRN 653



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|192291107|ref|YP_001991712.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris TIE-1]
 gi|192284856|gb|ACF01237.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris TIE-1]
          Length = 1053

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 296/586 (50%), Positives = 393/586 (67%), Gaps = 6/586 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           +     +   +          E E++   +  + V S   D       +   + +RQY I
Sbjct: 272 EGEHEVETDSDSDTEAEAEDDEEEDDEEEAEEDVVESVGGDDVLEEVPERAFRPRRQYKI 331

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
           QEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G  ISRKIT+  DR 
Sbjct: 332 QEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRS 391

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
            LKE+ + L+VP GMGVILRTAGASRTK EIKRDFEYL+R+W+ VR++ LNS AP LVYE
Sbjct: 392 RLKEVVQDLDVPEGMGVILRTAGASRTKPEIKRDFEYLIRMWETVRDVTLNSQAPKLVYE 451

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           EG+LIKR++RDLY K+I E++V+GE GYREA+DFM +LMPS  R V+ Y D  P+F R G
Sbjct: 452 EGSLIKRSLRDLYNKEIDEVLVAGEAGYREARDFMHMLMPSQVRAVKLYRDGQPLFSRMG 511

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           +E QLD++    V L S GY++INQTEALVSIDVNSGRSTREH IEDTAL+TN+EAAEE+
Sbjct: 512 VESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNMEAAEEV 571

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+QVG IS+FGLLEMSRQ
Sbjct: 572 ARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQ 631

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           RIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++   HN+IV T +DV LY
Sbjct: 632 RIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEVLMKGATHNLIVRTRTDVALY 691

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG---HKVGSDSQ 586
           +LN KR  + + E  F VS++V+    +   + F I++G  V  L           + S 
Sbjct: 692 VLNHKRGHLRDLETGFRVSLSVLADPTVSGQQSFVIDRGEQVHTLETAKALLAAQIAASP 751

Query: 587 APSYDKNIECVWQDEALLPIPKSES-LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           AP  +   +  +  EA +   ++    ED        ES G  R+RRRRRRR     +  
Sbjct: 752 APLDEPEDDDGYDFEAEIETDETVGLAEDQGSEAGESESEGRKRRRRRRRRRSGEPREAA 811

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           +AG V +    Q  + +  +   E  +       ++ A    +  +
Sbjct: 812 EAGAVGEDGE-QPFVSEGVEQVGEADEGDEAGEDDSDAEARADQGE 856



 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 98/166 (59%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E   +  +    +    H  
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSSRRRSRHRSHRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
                            + +      ++  +          ++   
Sbjct: 121 RNNGERVQSEIVEAATDVAAEQPHEAADHHEAHEAGAHAEAERLMH 166



 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 32/141 (22%), Gaps = 5/141 (3%)

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
                Q             D     I  SE                       ++  RR +
Sbjct: 913  SPSVQPSFEPAAEAEQPHDAPPHDIVPSEPQHTAATAAPDTSDPSAEDDSAAKKAARRRS 972

Query: 642  TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            T        +  ++ +   + + ++  EP+           A                 E
Sbjct: 973  TVREKVSFGASAAASETTAEAAAEVQPEPTAQAEQPATAAPAVEAPAAEAAPQAAAQPAE 1032

Query: 702  MESSNSSSDPIVKKTRWWKRR 722
              SS        ++  WW RR
Sbjct: 1033 EPSSA-----APRRVGWWSRR 1048


>gi|296158257|ref|ZP_06841089.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
 gi|295891593|gb|EFG71379.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
          Length = 1086

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 197/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KRA I + E+RF V++ ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +        PK E+            S  V  
Sbjct: 491 DDARLDEPRASWKMAEEAARELESETGYSKRIEEVKPKQEAAVKGITPEKPAPSAPVRP 549



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|310767298|gb|ADP12248.1| ribonuclease, Rne/Rng family protein [Erwinia sp. Ejp617]
          Length = 1206

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 200/663 (30%), Positives = 313/663 (47%), Gaps = 39/663 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 368 RARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 428 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE----------------ALLPIPKSESLE 613
             + +    + +    +A     + E   + +                  L    +E   
Sbjct: 488 SGEEIQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPALQEAVAEPAA 547

Query: 614 DIQDNIVSEESTGVIR---------------KRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
                     ++                     +   + + P  +   A   +     +N
Sbjct: 548 PKAAVKTPAPASAQPGLFSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAEAPAPRGERRN 607

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +            ++          E  + S         E +N + +    +   
Sbjct: 608 HRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEAREGREDRRNN 667

Query: 719 WKR 721
            +R
Sbjct: 668 QRR 670



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75



 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 43/176 (24%), Gaps = 9/176 (5%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ--------APSYDKNIECVWQ 599
             +              + +    +A    G +     Q          +   +      
Sbjct: 573 KKLFAAPEKPAEQPQPPVAEEKSAEAPAPRGERRNHRRQNNRRDRNGDRNERNDRSGERN 632

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
           D +     +S +  +      + E+      RR  +RR    TD     +V D       
Sbjct: 633 DRSAERNERSAAQSERAPRERNNEAREGREDRRNNQRRNPQQTDARSERMVPDEFERSET 692

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTEN-YDVSIPPVSTPEMESSNSSSDPIVK 714
                         +  N  E  +    E   +  +  V  PE+   +    P  K
Sbjct: 693 TQPRQPRQDRQRRRSGQNQEEKRSLVQEEKIPEPVVENVPAPEVLEESVQVMPRRK 748


>gi|167895268|ref|ZP_02482670.1| ribonuclease E [Burkholderia pseudomallei 7894]
          Length = 546

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 195/539 (36%), Positives = 297/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +   A    P+ E+            S    R
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQR 546



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|170732421|ref|YP_001764368.1| ribonuclease [Burkholderia cenocepacia MC0-3]
 gi|169815663|gb|ACA90246.1| ribonuclease, Rne/Rng family [Burkholderia cenocepacia MC0-3]
          Length = 1056

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 199/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   +   NS  P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +   A    PK E+            S    R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSAAPQR 549



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|167837372|ref|ZP_02464255.1| ribonuclease E [Burkholderia thailandensis MSMB43]
          Length = 559

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|119469427|ref|ZP_01612366.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
           member of the degradosome; involved in the production of
           [Alteromonadales bacterium TW-7]
 gi|119447291|gb|EAW28560.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
           member of the degradosome; involved in the production of
           [Alteromonadales bacterium TW-7]
          Length = 564

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 188/512 (36%), Positives = 289/512 (56%), Gaps = 6/512 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  ++        
Sbjct: 12  EEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +       F  +  I++VIK  Q +++Q+ KEERG KGAA+TT++S+AG Y VLMP
Sbjct: 72  EIARTYFPAGYTFNGRPNIRDVIKEGQEVIIQVDKEERGQKGAALTTFISVAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++  E+  D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +R+ A ++ AP L+++E N+I RAIRD   +DI EI++   + + EAK  ++   P 
Sbjct: 191 WEAIRQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS ++T+
Sbjct: 251 FMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +LK++ + DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ E++  VC  C G G +RS  S+ALSILR +EE  
Sbjct: 371 ARVQIGKISRFGLLEMSRQRLRPSLGEASQGVCPRCSGQGTVRSNESIALSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       V  YLLN++R ++   E      + ++    +    + + +    
Sbjct: 431 IKDNTSQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETPHYEVMRLRKD 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           + L    ++     +  +++ +          
Sbjct: 491 ETLETVSYEQVVAPEPEAFEMSKSPAAPVREE 522



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI   Y+
Sbjct: 62 ADRHGFLPLKEIARTYF 78


>gi|224825745|ref|ZP_03698849.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002]
 gi|224601969|gb|EEG08148.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002]
          Length = 1002

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 214/640 (33%), Positives = 315/640 (49%), Gaps = 39/640 (6%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V++    ++VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQNYEGGRPRIQDVLREGMEVMVQVEKDERGNKGAALTTYISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK++   LEVP GM +I RTAG  RT  E++ D  YL++L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKDLLAQLEVPQGMSLIARTAGIGRTFEELQWDLNYLLQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A     P L+ +EG+L+ RAIRD Y  DI EI++  E+ + +A+ FM  +MP+
Sbjct: 189 WRAIEGAAGAQSGPLLILQEGSLVIRAIRDYYQPDIGEILIDTEEIHEQARQFMAHVMPN 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V+ Y+DP P+F R  IE Q+++     V LPS G ++I+ TEALVS+DVNS R+T+
Sbjct: 249 TINRVKLYQDPVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSVDVNSARATK 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL+TNLEAAEEIARQLRLRDL GLIV+DFIDME +KN R VE +L++ LK DR
Sbjct: 309 GADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMEIQKNQREVENRLRDVLKHDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ S+ E++ + C  C G G+IR   S AL ILR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHILRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA I   E R  VS+ ++  I L    + I +    
Sbjct: 429 MKENTGAVHAQVPVDVATFLLNEKRAEIYSIEERLDVSVVLIPNIHLETPHYKIVRVRHD 488

Query: 572 QALV-------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
                      +       +  A       +   Q+ A+  I   +   ++   +   E 
Sbjct: 489 DMSELGDLPSYSRVEIQEEEGTANFGQAKPKIERQEAAVKGITPLQPAPEVAAPVAPVEQ 548

Query: 625 TGVIRKRRRR---------------------------RRRRRPATDHHDAGVVSDVSSIQ 657
                    +                             ++ P  +  +           
Sbjct: 549 PVAAAAAPVQSAGLIERLVGWFKSVLAPAEPAKPAPVEVKKEPVREQRNPRSRQGDRRHG 608

Query: 658 N-VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           N V  D  +     +   +       A    E        
Sbjct: 609 NQVRRDRDERRQGGAQQEDRRRPAAPAEARGEAGQEPQAR 648



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 55/78 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|206559375|ref|YP_002230136.1| putative ribonuclease E [Burkholderia cenocepacia J2315]
 gi|206561223|ref|YP_002231988.1| ribonuclease E 1 [Burkholderia cenocepacia J2315]
 gi|198035413|emb|CAR51289.1| putative ribonuclease E [Burkholderia cenocepacia J2315]
 gi|198037265|emb|CAR53187.1| ribonuclease E 1 [Burkholderia cenocepacia J2315]
          Length = 1054

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 197/539 (36%), Positives = 297/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +   A    PK E+            S    R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSPAPQR 549



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|167825183|ref|ZP_02456654.1| ribonuclease E [Burkholderia pseudomallei 9]
          Length = 553

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  137 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|218130463|ref|ZP_03459267.1| hypothetical protein BACEGG_02052 [Bacteroides eggerthii DSM 20697]
 gi|317473946|ref|ZP_07933225.1| rne/Rng family ribonuclease [Bacteroides eggerthii 1_2_48FAA]
 gi|217987342|gb|EEC53672.1| hypothetical protein BACEGG_02052 [Bacteroides eggerthii DSM 20697]
 gi|316909788|gb|EFV31463.1| rne/Rng family ribonuclease [Bacteroides eggerthii 1_2_48FAA]
          Length = 524

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 265/580 (45%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +                                       +SL
Sbjct: 60  VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ LS AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W+        +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKATKFPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  + E +D++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  +  Y+     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGVLSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYIFYDPQGEEIDMKEE 520


>gi|256822393|ref|YP_003146356.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069]
 gi|256795932|gb|ACV26588.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069]
          Length = 951

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 215/642 (33%), Positives = 320/642 (49%), Gaps = 28/642 (4%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R+ L+  +N  +    A+ D     D+ I      ++   I        E S+ +A  D 
Sbjct: 2   RRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVDY 61

Query: 146 VSNVED----VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +         +           + +  I+E +K  Q ++VQI KEERGNKGAA+TT +S
Sbjct: 62  GAERHGFLPLKEVAREYMQNAPSRGRPTIKEALKEGQEIIVQIDKEERGNKGAALTTSIS 121

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAG Y VLMPN  +   ISR+I      + LK++   L VP GMG I+RTAG  ++  EI
Sbjct: 122 LAGSYLVLMPNNPRAGGISRRIEGDERTE-LKQVMSQLPVPNGMGCIVRTAGIGKSLEEI 180

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + DF YL+  W+ ++++A    AP L+ +E ++I RAIRD    DI EII+   + Y   
Sbjct: 181 QYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPEIYERV 240

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K  ++   P +   V+ Y D  P+F R  +E Q++S  Q EV LPS G V+ +QTEAL+S
Sbjct: 241 KSELQYQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEALLS 300

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NS R+T+   IE+TAL TN+EAAEEIARQLRLRD+ GLIV+DFIDM   +N R VE+
Sbjct: 301 IDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREVER 360

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK+S+ +DRAR+Q+G IS FGLLEMSRQR+R S+ ES+  VC  C G+G IR   S+AL
Sbjct: 361 VLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSLAL 420

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           SILR +E+  ++ +   +      +V  +LLN+KR  I + E R  V + VV    L   
Sbjct: 421 SILRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPYLETP 480

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSESLEDIQDNI 619
            + + +    + L ++ + +  D+      ++ +      D+  L   K  S        
Sbjct: 481 HYEVLRVKAGETLEDSSYSLIGDAPEIELVRSSKQPAPVSDQPALKGVKPTSPPPAPSKA 540

Query: 620 VSEESTG---------------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
           V ++  G                       +  R +  R     +    G        +N
Sbjct: 541 VKKKKPGLFARLWTSLFGDDEDKKKKDKQSKNNRGKYDRNTRGRNTRHQGKKRTNQKGRN 600

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                     +       N ++    G  +      P     
Sbjct: 601 QTQAQNKNQPQEQRDGKDNKVQQKTGGRPQKKQNDKPQRKQT 642



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 3   NKMLIDAS-HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            +MLI+A+ H EE RV ++   R+ +LD E   ++Q KGNIY  KVTR+EPSL+AAFVDY
Sbjct: 2   RRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVDY 61

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           G  RHGFLP  E+  +Y Q   S  +  +KE+     +     D    G+
Sbjct: 62  GAERHGFLPLKEVAREYMQNAPSRGRPTIKEALKEGQEIIVQIDKEERGN 111


>gi|329954387|ref|ZP_08295479.1| S1 RNA binding domain protein [Bacteroides clarus YIT 12056]
 gi|328527655|gb|EGF54648.1| S1 RNA binding domain protein [Bacteroides clarus YIT 12056]
          Length = 524

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 152/580 (26%), Positives = 265/580 (45%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +                                       +SL
Sbjct: 60  VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ LS AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W+        +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKATKYPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  +  Y+     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGVLSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYIFYDPQGEEIDMKEE 520


>gi|209695669|ref|YP_002263598.1| ribonuclease E [Aliivibrio salmonicida LFI1238]
 gi|208009621|emb|CAQ79917.1| ribonuclease E [Aliivibrio salmonicida LFI1238]
          Length = 1015

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 190/545 (34%), Positives = 297/545 (54%), Gaps = 13/545 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  ++        
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGADRHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ V+  + ++ AP L+++E N+I RAIRD   +DI EI++   K +  A+  ++L+ P 
Sbjct: 191 WEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ YE   P+F    IE Q++S    EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKLYEGEVPLFSHYQIESQIESAFDREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V + +V   ++    F + +    
Sbjct: 431 LKDNTTQVLAVVPVAIASYLLNEKRRSVQHIEKFHNVRVIIVPNSDMETPHFEVVRIREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIE-------CVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +      + +  + +A    +  E          ++E +L    + +          E+ 
Sbjct: 491 EEQEMLSYLLPKNLEALREAEAKETPAMYSAPKKREEPVLQGFSAPTQAAPMSKAPEEKI 550

Query: 625 TGVIR 629
                
Sbjct: 551 AEPKT 555



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
            +RHGFLP  EI  +Y      YQ   + +  L +   +     +    + 
Sbjct: 62  ADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNK 112


>gi|84684929|ref|ZP_01012829.1| ribonuclease, Rne/Rng family protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667264|gb|EAQ13734.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 958

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 267/573 (46%), Positives = 353/573 (61%), Gaps = 2/573 (0%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE--SIISA 141
            D     + +  +     +  DD            S       +  S E + +       
Sbjct: 170 EDVDDAEEGAEASDEAEASGDDDTDAKPSRSRRSRSRSRSRSRSRPSDEEDAKPVDAAEK 229

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ + S  +D          K   R+Y IQEV+K RQILLVQ+VKEERGNKGAA+TTYLS
Sbjct: 230 DDTIESVADDDDHEDIRPPRKPRPRKYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLS 289

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPNT++G  ISRKITN VDRK LKEIA  L+VP G G+I+RTAGA RTK EI
Sbjct: 290 LAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIATSLDVPKGAGLIVRTAGAKRTKTEI 349

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRD+EYL R+W+ +REL L S AP  +YEEG+LIKR+IRDLY KDI E++V GE GYR A
Sbjct: 350 KRDYEYLQRMWEQIRELTLKSTAPAKIYEEGDLIKRSIRDLYNKDIDEVLVEGEGGYRIA 409

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           KDFMK++MPS+A+ V+ Y D  P+F R  +E  L S+    V L S GY++I  TEALV+
Sbjct: 410 KDFMKMIMPSHAKNVKNYHDQLPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEALVA 469

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK
Sbjct: 470 IDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNNAVEK 529

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           KLK+ LK DRAR+QVG IS FGLLEMSRQR+R  ++E+TT+ C +C G G IRS  ++AL
Sbjct: 530 KLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCAHCHGTGLIRSDDNLAL 589

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           +ILR +EE   +  +  +++     +V +L+N KR  I + EAR+G++I +     L   
Sbjct: 590 NILRQLEEEGTRGRSKEVLLKAPVGIVNFLMNVKREHIAQIEARYGMAIRLEADPFLISP 649

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            F IEK       V           A   +   E +  +       ++    +  ++   
Sbjct: 650 DFEIEKFKTATRSVAEVTAPVVSVDASLMEDLDEDIEDETEEDQSEETSEASETNEDDDQ 709

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
            +     R+RR  R R +  +D        +  
Sbjct: 710 PKKKRRRRRRRGGRGRNKSRSDEDGDESGDEAQ 742



 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 76/148 (51%), Positives = 93/148 (62%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ALL+E        E   +           + + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALLEEERAYAEALEREEEGRKSRRSAPRAEETR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSN 148
            +   +   ++    + I          
Sbjct: 121 SDDEVVTKDAEPQGMDVIDLDEGGEADE 148


>gi|325292698|ref|YP_004278562.1| ribonuclease E [Agrobacterium sp. H13-3]
 gi|325060551|gb|ADY64242.1| ribonuclease E [Agrobacterium sp. H13-3]
          Length = 985

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 338/612 (55%), Positives = 419/612 (68%), Gaps = 8/612 (1%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII------ 139
           ++ + +E  ++ T +EA +++       +      + ++      +   ++         
Sbjct: 179 KKKVAEEEAVSDTTAEASSEEDGSTGGEMAAMVDTDTISEEVEGLRRGNDDDDDDDDDDH 238

Query: 140 -SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
                      ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TT
Sbjct: 239 HEKEVIESVGAEDAMEEVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTT 298

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSLAGRYSVLMPNT++G  ISRKIT P DRK LKEIAR LEVP GMGVILRTAGA+RT+
Sbjct: 299 YLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTR 358

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
           +EIKRDFEYLMRLW+NVR L LNS AP LVYEEG+LIKR+IRDLY KDISEIIVSGE+GY
Sbjct: 359 VEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGY 418

Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378
           REAKDFMK+LMPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEA
Sbjct: 419 REAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEA 478

Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
           LV+IDVNSGRSTREH IE+TAL TNLEAAEE+ARQLRLRDLAGL+V+DFIDMEEK+NNRS
Sbjct: 479 LVAIDVNSGRSTREHSIEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRS 538

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           VEKKLK+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC +C G G++RS+SS
Sbjct: 539 VEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESS 598

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
           +AL +LR VEEYLL+ T HNI V    +  LYLLN KR TIV+YE RFGV+I +     +
Sbjct: 599 IALHVLRGVEEYLLRNTTHNITVRCTPETALYLLNHKRGTIVDYEGRFGVAIIIAADAGV 658

Query: 559 ADKLFYIEKGSPVQALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
             + F I++G  V+  V          S     D  +  V +DE    I K+++ E  Q 
Sbjct: 659 GAQHFAIDRGEAVENPVKIESLIQMLPSFVEEEDDFVVEVEEDEEEEEIVKAQASEPRQQ 718

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
               +      RKR+RRRRRR     +   G V   +      DD+ D     +D    +
Sbjct: 719 QQQGDNGEDGKRKRKRRRRRRGKGGQNDQNGAVDAQAGDDTGADDADDEDGVETDEAADD 778

Query: 678 LLENGAHGFTEN 689
             ENG +    +
Sbjct: 779 ADENGVNEAASS 790



 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 88/210 (41%), Positives = 113/210 (53%), Gaps = 1/210 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVTIPNDHS 119
           YGGNRHGFL F EIHPDYYQIP +DRQALLK      +   +  + D         +   
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDFESADAPEPGAPAVDLSQ 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            ++         ET +  ++       +  E  +  +   V    +     +      + 
Sbjct: 121 ADQPDVGIVAVSETTDAVVVDETVAAAAAEEVSEDVTAVAVEAVAEEAPKKRTRRPRAKK 180

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
            + +          A+     S  G  + +
Sbjct: 181 KVAEEEAVSDTTAEASSEEDGSTGGEMAAM 210


>gi|221201328|ref|ZP_03574367.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M]
 gi|221208808|ref|ZP_03581806.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans
           CGD2]
 gi|221171264|gb|EEE03713.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans
           CGD2]
 gi|221178596|gb|EEE11004.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M]
          Length = 1053

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 191/469 (40%), Positives = 281/469 (59%), Gaps = 3/469 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I
Sbjct: 83  DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW  +   + +  
Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201

Query: 284 --APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
              P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP     V++Y D
Sbjct: 202 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 261

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +
Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK DRARVQ+G IS 
Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  ++     I  
Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
               +V  +LLN+KR  I + E+RF V I ++    L    + +E+     A ++     
Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
              ++  + +   E  +   A    PK E+            S    R 
Sbjct: 502 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSAAPQRP 550



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|254563006|ref|YP_003070101.1| ribonuclease E or G [Methylobacterium extorquens DM4]
 gi|254270284|emb|CAX26280.1| putative ribonuclease E or G [Methylobacterium extorquens DM4]
          Length = 1053

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 290/547 (53%), Positives = 372/547 (68%), Gaps = 1/547 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 355 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 414

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKE+   L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL 
Sbjct: 415 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 474

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE  YREAKDFM++LMP  +++V+ Y
Sbjct: 475 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 534

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            DP PIF R G+E QLD++  T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 535 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 594

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNLEAAEE+ARQ+RLRDLAGL+V+DFIDMEEK+NNR+VEK+L E+LK DRAR+QVG I
Sbjct: 595 LKTNLEAAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRI 654

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQRIR+ VLES++  C +C G+G++R+ SSVAL ILRS+EE LL+  +HN+
Sbjct: 655 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNV 714

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578
           ++ T ++  LY+LNQKRA + + E RF V+I +     L A   F +E+G P        
Sbjct: 715 VLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPV 774

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
             V + + +P Y+         E+         +E   +    E       +    RRRR
Sbjct: 775 TGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRR 834

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           R            +  +      DS D   + ++  +                 S P  +
Sbjct: 835 RRRRRGGRTAGEGEARARDEDGTDSEDGAEDGAEEGDDAPDSEPEAAEAALGAASEPDEA 894

Query: 699 TPEMESS 705
             + +++
Sbjct: 895 ASDADAN 901



 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 89/142 (62%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y
Sbjct: 3   NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F EIHPDYYQIP +DR AL++     + +     +             +  
Sbjct: 63  GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122

Query: 122 EVAPIANFSQETEEESIISANN 143
             +   +  +  E  S   + +
Sbjct: 123 RGSRPDDTVKSQEAASDAGSED 144


>gi|107022187|ref|YP_620514.1| ribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116689133|ref|YP_834756.1| ribonuclease [Burkholderia cenocepacia HI2424]
 gi|105892376|gb|ABF75541.1| RNAse E [Burkholderia cenocepacia AU 1054]
 gi|116647222|gb|ABK07863.1| RNAse E [Burkholderia cenocepacia HI2424]
          Length = 1059

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 199/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   +   NS  P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +   A    PK E+            S    R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSAAPQR 549



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|85715457|ref|ZP_01046438.1| ribonuclease E and G [Nitrobacter sp. Nb-311A]
 gi|85697652|gb|EAQ35528.1| ribonuclease E and G [Nitrobacter sp. Nb-311A]
          Length = 1063

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 293/581 (50%), Positives = 380/581 (65%), Gaps = 5/581 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P +D  A  + +           ++  H +      H  E          E +       
Sbjct: 291 PLADDGARNEHTISTDEAPATHGEEHDHENADHAGGHPHEVELHGDGVRVEDDSIDDDEE 350

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
              V S   D       +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLS
Sbjct: 351 EEQVESVGGDDALEEVPERAYRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLS 410

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY+VLMPNT++G  ISRKIT+  DR  LKE+ + L+VP GMGVILRTAGA+RTK EI
Sbjct: 411 LAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKSEI 470

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRDFEYL+R+W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY EA
Sbjct: 471 KRDFEYLIRMWETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYSKEIDEIQVAGEAGYHEA 530

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           +DFMK+LMPS  R V+QY D  P+F R G+E QLD++    V L S GY++INQTEALVS
Sbjct: 531 RDFMKMLMPSNVRTVKQYRDCQPLFSRMGVESQLDAMFLPTVQLRSGGYIVINQTEALVS 590

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSGRSTREH I+DTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK++NR+VE+
Sbjct: 591 IDVNSGRSTREHHIKDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRSNRAVER 650

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           KL E L+ DRAR+QVG IS+FGLLEMSRQRIR+S+LES+T+ C +C G G++RS  SVAL
Sbjct: 651 KLSECLRHDRARIQVGRISHFGLLEMSRQRIRASMLESSTEPCPHCGGTGHVRSVPSVAL 710

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA-D 560
            +LRS+EE L++   HN+IV T  +V LY+LNQKR  +   E  F V ++VV    L   
Sbjct: 711 QLLRSLEEVLIKGATHNLIVRTRINVALYVLNQKRGHLRALEHSFKVGLSVVADPSLEGQ 770

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQ--APSYDKNIECVW--QDEALLPIPKSESLEDIQ 616
           + F I++G  +  L      + +      P  ++  E       EA +    +E+  D +
Sbjct: 771 QSFVIDRGEQIHTLEAAKALLAAQLATYPPQAEEAQEDEQPLDVEAEVEADDAETRADER 830

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
               +E      ++RR RR R   A D+     V    S+Q
Sbjct: 831 AGGETEGEGRKRKRRRSRRERSSEANDNQPPQTVDGPDSVQ 871



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/176 (43%), Positives = 106/176 (60%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA+H EETRVVV+R NRVEE DFES  +KQ++GNIYLAKVTRVEPSLQAAF++Y
Sbjct: 21  PNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 80

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E  ++D  +   +   +    
Sbjct: 81  GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEDRPNRRRSRHRNSRRR 140

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177
           +       +   + +  ++  +   S+       + +D    +      Q+     
Sbjct: 141 DHGERVQSAVVEDGDREVAGIDTTQSDPPPDDSATDDDHLSPYHEAQEAQDHDHPN 196


>gi|283478784|emb|CAY74700.1| ribonuclease, Rne/Rng family protein [Erwinia pyrifoliae DSM 12163]
          Length = 1287

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 200/663 (30%), Positives = 312/663 (47%), Gaps = 39/663 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 371 RARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE----------------ALLPIPKSESLE 613
             +      + +    +A     + E   + +                  L    +E   
Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPALQEAVAEPAA 550

Query: 614 DIQDNIVSEESTGVIR---------------KRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
                     ++                     +   + + P  +   A   +     +N
Sbjct: 551 PKAAVKTPAPASAQPGLVSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAEASAPRGERRN 610

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +            ++          E  + S         E +N + +    +   
Sbjct: 611 HRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEAREGREDRRNN 670

Query: 719 WKR 721
            +R
Sbjct: 671 QRR 673



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 3/149 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G           +  +  +    D++ E    D +     +S +  +      + E+  
Sbjct: 605 RGERRNHRRQNNRRDRNGDRNERNDRSGER--NDRSAERNERSAAQSERAPRERNNEARE 662

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               RR  +RR    TD     +V D                     +  N  E  +   
Sbjct: 663 GREDRRNNQRRNPQQTDARSERMVPDEFERSETTQPRQPRQDRQRRRSGQNQEEKRSLVQ 722

Query: 687 TEN-YDVSIPPVSTPEMESSNSSSDPIVK 714
            E   +  +  V  PE+   +    P  K
Sbjct: 723 EEKIPEPVVENVPAPEVLEESVQVMPRRK 751


>gi|259908804|ref|YP_002649160.1| ribonuclease E [Erwinia pyrifoliae Ep1/96]
 gi|224964426|emb|CAX55935.1| Ribonuclease E [Erwinia pyrifoliae Ep1/96]
          Length = 1287

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 200/663 (30%), Positives = 312/663 (47%), Gaps = 39/663 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 371 RARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE----------------ALLPIPKSESLE 613
             +      + +    +A     + E   + +                  L    +E   
Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPALQEAVAEPAA 550

Query: 614 DIQDNIVSEESTGVIR---------------KRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
                     ++                     +   + + P  +   A   +     +N
Sbjct: 551 PKAAVKTPAPASAQPGLVSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAEASAPRGERRN 610

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +            ++          E  + S         E +N + +    +   
Sbjct: 611 HRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEAREGREDRRNN 670

Query: 719 WKR 721
            +R
Sbjct: 671 QRR 673



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78



 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 3/149 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G           +  +  +    D++ E    D +     +S +  +      + E+  
Sbjct: 605 RGERRNHRRQNNRRDRNGDRNERNDRSGER--NDRSAERNERSAAQSERAPRERNNEARE 662

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               RR  +RR    TD     +V D                     +  N  E  +   
Sbjct: 663 GREDRRNNQRRNPQQTDARSERMVPDEFERSETTQPRQPRQDRQRRRSGQNQEEKRSLVQ 722

Query: 687 TEN-YDVSIPPVSTPEMESSNSSSDPIVK 714
            E   +  +  V  PE+   +    P  K
Sbjct: 723 EEKIPEPVVENVPAPEVLEESVQVMPRRK 751


>gi|167911902|ref|ZP_02498993.1| ribonuclease E [Burkholderia pseudomallei 112]
          Length = 555

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|85059030|ref|YP_454732.1| ribonuclease E [Sodalis glossinidius str. 'morsitans']
 gi|84779550|dbj|BAE74327.1| ribonuclease E [Sodalis glossinidius str. 'morsitans']
          Length = 1187

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 201/645 (31%), Positives = 312/645 (48%), Gaps = 24/645 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPPQYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P  MG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDSMGLIVRTAGVGKSADALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMP 330
           W  +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WQAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIASLGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFTSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE  L+ES+++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENCLRESVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLE+SRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLELSRQRLSPSLGESSHHVCPRCGGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVQAIIVPNDQMQTPHYAVLRVR 490

Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALL-----PIPKSESLEDIQDNIV 620
             +      + +     ++   PS +   +    ++  L     P P   S +    +  
Sbjct: 491 KGEEAPTLSYLLPQLHEAEMTQPSEEPASDRKRPEQPALAAFVMPDPPLVSEKPATVDAS 550

Query: 621 SEESTGVIRKRRRRRRRRRPATDHH-------DAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
           S  +   +        R                     +  + + V+ ++      P   
Sbjct: 551 SVPAAPAVSAASAGASRGLFGRLVDGFKSLLGTPAPQQETDTAKAVVVEAPAEAETPRRQ 610

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
              +       G   + +           +  +   DP  K+++ 
Sbjct: 611 ERQDRRGQRRQGGRRDRNGEPVRAGQENRQLRDGRDDPRRKRSQT 655



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|78065695|ref|YP_368464.1| ribonuclease E [Burkholderia sp. 383]
 gi|77966440|gb|ABB07820.1| RNAse E [Burkholderia sp. 383]
          Length = 1053

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 206/667 (30%), Positives = 317/667 (47%), Gaps = 47/667 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    PK E+            S    R 
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSPAPQRP 550

Query: 631 --------------------------------------RRRRRRRRRPATDHHDAGVVSD 652
                                                    + +  RPA           
Sbjct: 551 VEPVAAPTPVAPASGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQAARPARGERTEKSEQR 610

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMESSNSSSD 710
                +   +      +     +  +   G     E    +V  P  +    E       
Sbjct: 611 GERGGDRNRNRRGGAQQAQGGRDQAVAGRGQPQRQEREGKEVREPREAREPREGREPRES 670

Query: 711 PIVKKTR 717
              ++ R
Sbjct: 671 REPREPR 677



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|13470490|ref|NP_102059.1| ribonuclease E [Mesorhizobium loti MAFF303099]
 gi|14021232|dbj|BAB47845.1| ribonuclease E [Mesorhizobium loti MAFF303099]
          Length = 984

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 295/549 (53%), Positives = 374/549 (68%), Gaps = 4/549 (0%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE----TEEESIIS 140
           D  +  +E    +            GDV        E+    ++   +     E +S   
Sbjct: 189 DEGSAEQEETETREGGPTSIAAAVEGDVISEPVSHTEQTTEASSSDNDRGMLEEVQSSHP 248

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
            +++V S   +       +  K  +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYL
Sbjct: 249 DDHEVESVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYL 308

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGRYSVLMPNT++G  ISRKIT+ VDRK LKE+   LEVP GMGVILRTAG SRTK E
Sbjct: 309 SLAGRYSVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTKAE 368

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           IKRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR++RDLY KDI EI+VSGE+GYRE
Sbjct: 369 IKRDYEYLMRLWENVRSLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGEEGYRE 428

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           AKDFM++LMPS+A++V+ + D  PIF R+GIE QLD + Q +VTL S GY+IINQTEALV
Sbjct: 429 AKDFMRMLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEALV 488

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVNSGRST+EH IEDTAL TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE +NNRSVE
Sbjct: 489 AIDVNSGRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRSVE 548

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           K+LK+ LK DRAR+QVG IS+FGL+EMSRQRIR+SVLEST K C +C G G++RS SSVA
Sbjct: 549 KRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVA 608

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           L ++R++EE+LL+ +  +I V T +   LY+LN KR T+VE E+RFG++I +     +  
Sbjct: 609 LMVVRAIEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITIEADDTVGA 668

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           + + I +G+  +            +     +   E    +E    + ++E          
Sbjct: 669 QHYAIFRGALAEKPEGFVEARSLPAYVEPEEPEDEIAVVEEDDEVVVQAEQPRQQPQQHQ 728

Query: 621 SEESTGVIR 629
                G   
Sbjct: 729 QPRPAGSED 737



 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 79/152 (51%), Positives = 89/152 (58%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDASH EETRVVV+R NR+EE DFES+ KKQ+KGNIYLA+VTRVEPSLQAAFV+
Sbjct: 1   MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+       D E    D              
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEEDEDGDGDDRQSRDRGRRGR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                     +   +               D 
Sbjct: 121 RRGGKSRERGEHKRDTGEAGEGAGEPGEGGDN 152


>gi|295677200|ref|YP_003605724.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002]
 gi|295437043|gb|ADG16213.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002]
          Length = 1066

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 205/606 (33%), Positives = 312/606 (51%), Gaps = 14/606 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +K  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGTAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KRA I + E+RF V++ ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    PK E+            S  V   
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEKPAPSAPVRP- 549

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                    PA           +  ++N+           +  T            TE  
Sbjct: 550 ------AATPAPVAVTPASGGFIGWLKNLFGMQPAAPAPAAPATTDKQARPQRGERTERG 603

Query: 691 DVSIPP 696
           + +   
Sbjct: 604 ERTGER 609



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGN 110


>gi|260773155|ref|ZP_05882071.1| ribonuclease E [Vibrio metschnikovii CIP 69.14]
 gi|260612294|gb|EEX37497.1| ribonuclease E [Vibrio metschnikovii CIP 69.14]
          Length = 1044

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 202/632 (31%), Positives = 316/632 (50%), Gaps = 13/632 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV++  Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EISRDYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LK     L +P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTD-LKTALSTLVLPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLIRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A  V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FASRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTVQVLAVVPVSIASYLLNEKRRSINHIERNQEVKITIVPNSDMETPHFEVLRIREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      +           +   E   ++     I      E +     S        + 
Sbjct: 488 EEQEILSYL-----IPNKLEAMREAEGKELTDAEIKPKRIEEPVLKGFASPAQNAPAPRV 542

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           +       P T+     V     ++  +   + +   EP  +    +    A    E  +
Sbjct: 543 QVETAPAEPVTEKQPTLVSRFFKALSTLFSSTSEEVKEP--VVPAQIETKPAQPRRERNE 600

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               P        ++   +   K++     RK
Sbjct: 601 RRRNPRDKHNKRKADDVVEKADKESATPAPRK 632



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  DY      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEISRDYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 106


>gi|30249428|ref|NP_841498.1| ribonuclease G and E [Nitrosomonas europaea ATCC 19718]
 gi|30138791|emb|CAD85368.1| Ribonucleases G and E [Nitrosomonas europaea ATCC 19718]
          Length = 853

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 213/642 (33%), Positives = 317/642 (49%), Gaps = 24/642 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++    +   D E +  +    ++       LE           + E + +  
Sbjct: 11  PEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLE----------PSLEAAFVDY 60

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                  +   +              + + ++++  Q L+VQ+ K+ERGNKGAA+TTY+S
Sbjct: 61  GAGRHGFLPYKEIAPTCFDRNTDWSGHRVADLLREGQELIVQVDKDERGNKGAALTTYIS 120

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +G  ISR+++     + L+E+   L+VP GM +I RTAG  R + E+
Sbjct: 121 LAGRYLVLMPNNPQGGGISRRVSAEERAE-LREVINNLQVPEGMSIIARTAGIGRNEEEL 179

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  YL++LW  + E A N     L+Y+E +L+ RAIRD +  +I EI++   + Y +A
Sbjct: 180 QWDLNYLVQLWRAIEEAASNEKGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQA 239

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
             FM  +MP+    ++ Y+D  P+F R  IE Q+++ +  +VTLPS G ++I+ TEALVS
Sbjct: 240 YQFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVS 299

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNS R+ R   IE TAL TNLEAA+EIARQLRLRDL GL+VVDFIDME  +N R VE 
Sbjct: 300 IDVNSARAIRGSDIETTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVES 359

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L ++L+ DRARVQ+G IS FGLLE+SRQR+R S+ E     C  C G G+IR   S AL
Sbjct: 360 SLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSAL 419

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR ++E  ++     + V    DV  +LLN+KR+ I   EAR  V I ++  I +   
Sbjct: 420 HILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETP 479

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV-WQDEALLPIPKSESLEDIQDNIV 620
            + I +                  +  S +  +  +  +  A  P      ++  Q   V
Sbjct: 480 NYTITRLRHEDIKSTELPPSYEMVEKTSEEVTLPSISQETRATRPKAAVTGIKPEQPAPV 539

Query: 621 SEESTGV------------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
            EE                      R    + A +        + S  +     S     
Sbjct: 540 PEEKPREQLSFLDKFFSLFRPAGSNRTETDQAAEESQTKPSRGERSRNRRDRGRSKRTKT 599

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
                 N +L E G     ++  V   PV+    ++      
Sbjct: 600 STQVTANGSLQEAGHSSLLDHPVVVEHPVTDRATDNDRQHRK 641



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 53/74 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ ++D E+  K+Q K NIY A VTR+EPSL+AAFVDYG
Sbjct: 2  KRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHP 76
            RHGFLP+ EI P
Sbjct: 62 AGRHGFLPYKEIAP 75


>gi|221214112|ref|ZP_03587085.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1]
 gi|221166289|gb|EED98762.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1]
          Length = 1056

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 191/469 (40%), Positives = 281/469 (59%), Gaps = 3/469 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I
Sbjct: 83  DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW  +   + +  
Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201

Query: 284 --APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
              P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP     V++Y D
Sbjct: 202 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 261

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +
Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK DRARVQ+G IS 
Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  ++     I  
Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
               +V  +LLN+KR  I + E+RF V I ++    L    + +E+     A ++     
Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
              ++  + +   E  +   A    PK E+            S    R 
Sbjct: 502 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSAAPQRP 550



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|311104734|ref|YP_003977587.1| ribonuclease E [Achromobacter xylosoxidans A8]
 gi|310759423|gb|ADP14872.1| ribonuclease E [Achromobacter xylosoxidans A8]
          Length = 1027

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 195/601 (32%), Positives = 299/601 (49%), Gaps = 45/601 (7%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR++     ++ L++    L++P GM +I RTAG  R   E++ D  YL++L
Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDLPQGMSIIARTAGIGRNVEELQWDLSYLLQL 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A ++ AP L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM ++MP 
Sbjct: 190 WTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             + V++Y D  P+F R  IE Q+++ +   VTLPS G ++I+ TEALVS+DVNS RSTR
Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSVDVNSARSTR 309

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL+TN EAA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L  DR
Sbjct: 310 GADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G IR   S AL +LR ++E  
Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  YLLN+KRA I + EAR  V++ ++    L     +IE+    
Sbjct: 430 MKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPHHHIERLRHD 489

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP------------------------ 607
              +          +AP+ D   +    +    P                          
Sbjct: 490 DPRLEELKTSFELVEAPATDAPWQPREHEIKSRPEALVKGITPSQPAPVSTPAPAAAAPA 549

Query: 608 --------------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
                                SE+ +                + + R             
Sbjct: 550 PAAAGGLGGLFKRLFGWLGGSSEAAKPAPAVQEDSAKRASSGRGKGRSGHDGQERRGERH 609

Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
           G   + +       +  +           N    G      +           + +++ +
Sbjct: 610 GSDRNRNRRGESRAEGAEGSEGGRHHVRGNRRPEGERQERGDRHNRNEARGERDTQATQA 669

Query: 708 S 708
           +
Sbjct: 670 A 670



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110


>gi|325927797|ref|ZP_08189022.1| RNAse E [Xanthomonas perforans 91-118]
 gi|325541787|gb|EGD13304.1| RNAse E [Xanthomonas perforans 91-118]
          Length = 1222

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 210/608 (34%), Positives = 317/608 (52%), Gaps = 9/608 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 7   QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    DI EI+V   + Y +A++FMK +MP
Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMKQVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L+ +LK D
Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 485

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +    +G              +       +A L IP + ++  I+ +  +         
Sbjct: 486 NELGEESGKPSYQRGTPRKLPVHAL----TKAQLNIPAAPAVTSIKPSQPAPVREEAPAP 541

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P         + G +   E  
Sbjct: 542 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRGERG 601

Query: 691 DVSIPPVS 698
           +       
Sbjct: 602 ERGGQRRD 609



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 62/107 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 61  RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107


>gi|152969637|ref|YP_001334746.1| ribonuclease E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954486|gb|ABR76516.1| RNase E, membrane attachment, mRNA turnover, maturation 5S RNA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 1074

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 200/605 (33%), Positives = 308/605 (50%), Gaps = 14/605 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KRA +   E+R G V + +V   E+    + + +  
Sbjct: 428 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   + E   +     P   +  + D     + EE     
Sbjct: 488 KGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPAPMLEEPAAAP 547

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                       A      G++S   S    I  S     +P+++      E       E
Sbjct: 548 VAAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGAEEAKPAEVEIEKKAEEKPERQQE 602

Query: 689 NYDVS 693
                
Sbjct: 603 RRKPR 607



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|21231532|ref|NP_637449.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768412|ref|YP_243174.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113213|gb|AAM41373.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573744|gb|AAY49154.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004]
          Length = 1187

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 212/637 (33%), Positives = 320/637 (50%), Gaps = 10/637 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LK+    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    DI EI+V   + Y +A++FM+ +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMQQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYD-KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
            +   ++G                +     +  + P   S              +     
Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPVAPAVTSIKPSQPAPVREEAPAAAPAP 548

Query: 630 KRRRRRRRRRPATDHHD--AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                     P T        +   V +     + S       +D    N  + G  G  
Sbjct: 549 APVVALPLPAPVTGVVGWLKRIFGGVDAPAAAPEASQQQRPRQNDAARGNRNDRGERGGQ 608

Query: 688 EN--YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                D              N + +   K+ R  +R+
Sbjct: 609 RRDGRDARNGNGGQHRGNGGNGNGNGANKERRDERRQ 645



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGN 110


>gi|238894119|ref|YP_002918853.1| ribonuclease E [Klebsiella pneumoniae NTUH-K2044]
 gi|238546435|dbj|BAH62786.1| RNase E [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1077

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 197/605 (32%), Positives = 303/605 (50%), Gaps = 13/605 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KRA +   E+R G V + +V   E+    + + +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   + E   +     P   +  + D     + EE     
Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPAPMLEEPAAAP 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                       A      G++S   S    I    +              E        
Sbjct: 551 VAAAA----PVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVQVEKKAEEKPERQQER 606

Query: 689 NYDVS 693
               +
Sbjct: 607 RKPRA 611



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|259416629|ref|ZP_05740549.1| ribonuclease E [Silicibacter sp. TrichCH4B]
 gi|259348068|gb|EEW59845.1| ribonuclease E [Silicibacter sp. TrichCH4B]
          Length = 952

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 268/624 (42%), Positives = 365/624 (58%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                    A   +    D +  ++    +         +         ++ + S  +D 
Sbjct: 206 EAEGVIADAAEETEEASTDTSSEDEAGDSDDENAEATEAKDSSSDAADKDDSIESVADDD 265

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    K   ++Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN
Sbjct: 266 DQEDIRPPRKPRPKRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPN 325

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           T++G  ISRKITN VDRK LKEIA  L+VP G G+I+RTAGA RTK EIKRD+EYL R+W
Sbjct: 326 TARGGGISRKITNAVDRKKLKEIAAELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRMW 385

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           + +REL L S+AP  +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+
Sbjct: 386 EQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSH 445

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A+ V+ Y D  P+F R  +E  L  +    V L S GY++I  TEALV+IDVNSGR+T+E
Sbjct: 446 AKNVKNYHDQLPLFARYQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKE 505

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEKKLK+ LK DRA
Sbjct: 506 ASIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLKDKLKTDRA 565

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+QVG IS FGLLEMSRQR+R  ++E+TT  C +C G G IRS  S+ALSILR +EE   
Sbjct: 566 RIQVGRISGFGLLEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGT 625

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +  +  ++V    D+  YL+NQKR  I + EAR+G+S+ +   + L    F +EK     
Sbjct: 626 RRRSREVLVKCPVDIANYLMNQKREHIAQIEARYGLSVRIEGDVTLVSPDFSLEKFKTAS 685

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             +           A   D+        E +   P +  +E  +    S+      R+RR
Sbjct: 686 RAIPVVTAPVVSVDASIMDQIDAIEEVAEEVEEAPAAAPVEAEETEGESKPKRKRRRRRR 745

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           ++        D+ D       +S ++   ++       ++ +    +E       E    
Sbjct: 746 KKSGNGENGQDNGDNSAAESETSDESKDAETGGEAEVKAEPSADGAVEVEGETEAEPKKK 805

Query: 693 SIPPVSTPEMESSNSSSDPIVKKT 716
                +                +T
Sbjct: 806 KTRTRTRSRSRKKVEPEAEQTTET 829



 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 78/156 (50%), Positives = 98/156 (62%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  ++              
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDEDPKPKRRTRSRS 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156
           +  A  A  +   E + + ++N ++           
Sbjct: 121 KTRAEKAKTADAVETKEVAASNGEISGMETIDLSDD 156


>gi|254469358|ref|ZP_05082763.1| ribonuclease E [Pseudovibrio sp. JE062]
 gi|211961193|gb|EEA96388.1| ribonuclease E [Pseudovibrio sp. JE062]
          Length = 1022

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 282/527 (53%), Positives = 367/527 (69%)

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           + D     ED       + P++ +  Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLS
Sbjct: 244 DADEQDGSEDEAQEEVIERPRRLRDNYKIQEVIKRRQLLLVQVVKEERGNKGAALTTYLS 303

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRYSVLMPNT +G  ISRKIT P DRK LK++A  L+VP GMGVILRTAGASRTK EI
Sbjct: 304 LAGRYSVLMPNTDRGGGISRKITKPTDRKRLKQVAGDLDVPNGMGVILRTAGASRTKAEI 363

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRDFEYL+RLW+NVREL L+S AP LVYEEG+LIKR+IRDLY KDI +++V+GE+GYREA
Sbjct: 364 KRDFEYLLRLWENVRELTLDSAAPTLVYEEGSLIKRSIRDLYNKDIDQVLVAGEEGYREA 423

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           KDFM++LMPS+++ V+ Y D  PIF R G+E QLD++   +VTL S GY++INQTEALV+
Sbjct: 424 KDFMRMLMPSHSKNVQPYRDATPIFTRFGVEAQLDAMFSPQVTLKSGGYIVINQTEALVA 483

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG++TRE  IEDTA  TNLEAAEEIARQLRLRDLAGL+V+DFIDMEE +NNR+VE+
Sbjct: 484 IDVNSGKATREQNIEDTAQATNLEAAEEIARQLRLRDLAGLVVIDFIDMEENRNNRAVER 543

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +LKE LK DRAR+QVG IS+FGLLEMSRQRIR+ VLES++ VC +C G+G +RS  SVAL
Sbjct: 544 RLKECLKSDRARIQVGRISHFGLLEMSRQRIRTGVLESSSVVCPHCHGSGIVRSVESVAL 603

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILRS+E+ LL+ ++HN+ + T ++V +Y+LNQKR  +++ E RFG+ I++     + ++
Sbjct: 604 HILRSLEDQLLRGSSHNLNLRTPNEVAMYILNQKRHHLMDLERRFGLEISIFGDDSVTEQ 663

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            F +E+G        T     +      +    +    +EA     +  S ED  D    
Sbjct: 664 HFTLERGELATPSERTQPLPATVQPDTIFPIEEDEDVIEEAADEQKQEASDEDGNDRRRR 723

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
                     +    ++    D  +     D  + +    D+     
Sbjct: 724 RRRRRRRGGDKAEAEQKLDDADLSEEQPSDDEEAAEEKSADAEASDA 770



 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/86 (79%), Positives = 77/86 (89%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MANKMLIDA+H EETRV V+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1  MANKMLIDATHPEETRVTVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDR 86
          YGGNRHGFL F EIHPDYYQ+P  DR
Sbjct: 61 YGGNRHGFLAFSEIHPDYYQLPKEDR 86


>gi|213609302|ref|ZP_03369128.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 547

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 189/536 (35%), Positives = 290/536 (54%), Gaps = 9/536 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
             +      + +     +A +     E   +     P   + ++ D+       E 
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEP 546



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|260427654|ref|ZP_05781633.1| ribonuclease E [Citreicella sp. SE45]
 gi|260422146|gb|EEX15397.1| ribonuclease E [Citreicella sp. SE45]
          Length = 1022

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 263/573 (45%), Positives = 346/573 (60%)

Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
           S ++ + S  +D          K   R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY
Sbjct: 245 SGDDSIESVADDDTEEDIRPKRKPRPRKYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 304

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           LSLAGRY VLMPNT++G  ISRKITN  DR  LK+IA  ++VP G G+I+RTAGA RTK 
Sbjct: 305 LSLAGRYCVLMPNTARGGGISRKITNTTDRSKLKQIAAEIDVPKGAGLIIRTAGAKRTKT 364

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           EIKRD+EYL RLW+ +R L L S+AP  +YEEG+LIKR+IRDLY ++I E+ V G++GYR
Sbjct: 365 EIKRDYEYLQRLWEQIRALTLQSIAPAKIYEEGDLIKRSIRDLYNREIDEVHVEGDRGYR 424

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            AKDFMK++MPS+A+ V+ Y DP P+F R  +E  L S+    V L S GY++I  TEAL
Sbjct: 425 IAKDFMKMIMPSHAKNVKHYADPMPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEAL 484

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSGR+T+E  IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V
Sbjct: 485 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 544

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EKKLK+ LK DRAR+QVG IS FGLLEMSRQR+R  ++E+TT+ C  C G G IRS  ++
Sbjct: 545 EKKLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPACHGTGLIRSDDNM 604

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           AL+ILR +EE   +  +  ++V     +  YL+NQKR  +   EAR+G+++ +     L 
Sbjct: 605 ALNILRQIEEEGTRRRSREVLVKVPVGIANYLMNQKREHVAMIEARYGMAVRIEGDTHLV 664

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
              F +EK       V               D+  E   + E        E         
Sbjct: 665 SPDFSMEKFKTATRNVPEVVAPVVSVDTTLMDQVDEDALEAEVEEVEEVEEETTVETPTQ 724

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             ++     R+RRRRR R +   +  +           N   D+ D     +  T     
Sbjct: 725 QDDDDKPKKRRRRRRRSRSKSRENDENGESDGSDEGSDNGDADASDEVTAEAPATPVAAE 784

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                      +               + + P 
Sbjct: 785 AAAEVVTEAPEEAPAAETPEAAPAEEEAPAKPK 817



 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 96/158 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLI  +H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 6   MAKKMLIPPTHAEETRVVVVEGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 65

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F E+HPDYYQIP +DRQAL++E      +++   D+              
Sbjct: 66  YGGNRHGFLAFSEVHPDYYQIPVADRQALMEEEAALAAEADDEDDEKEKSRARSARSRRS 125

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
                       +++++  +  +++        G    
Sbjct: 126 RSRTRSKAEKTRSDDKTTSADVSEIKGMETIDLGDEEH 163


>gi|167763388|ref|ZP_02435515.1| hypothetical protein BACSTE_01762 [Bacteroides stercoris ATCC
           43183]
 gi|167698682|gb|EDS15261.1| hypothetical protein BACSTE_01762 [Bacteroides stercoris ATCC
           43183]
          Length = 524

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 264/580 (45%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +                                       +SL
Sbjct: 60  VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ LS AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W+        +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAIVKVQKATKFPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              V+  S  Y+II  TEAL  +DVNSG   +    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRIKNANGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  +  Y+     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGVLSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYVFYDPQGEEIDMKEE 520


>gi|167720583|ref|ZP_02403819.1| ribonuclease E [Burkholderia pseudomallei DM98]
          Length = 540

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 193/531 (36%), Positives = 295/531 (55%), Gaps = 7/531 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             A ++        ++  + +   E  +   A    P+ E+          
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERP 538



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|188991779|ref|YP_001903789.1| ribonuclease E [Xanthomonas campestris pv. campestris str. B100]
 gi|167733539|emb|CAP51743.1| ribonuclease E [Xanthomonas campestris pv. campestris]
          Length = 1194

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 217/641 (33%), Positives = 326/641 (50%), Gaps = 15/641 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LK+    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    DI EI+V   + Y +A++FM+ +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMQQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   ++G              +         +   P   S++  Q   V EE+   +  
Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAA 547

Query: 631 RRRRRRRRRPATDHHDAGVVSD-------VSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                            GVV         V +     + S       +D    N  + G 
Sbjct: 548 APATAPVVALPLPAPVTGVVGWLKRIFGGVDAPAAAPEASQQQRPRQNDAARGNRNDRGE 607

Query: 684 HGFTEN--YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            G       D              N + +   K+ R  +R+
Sbjct: 608 RGGQRRDGRDARNGNGGQHRGNGGNGNGNGANKERRDERRQ 648



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGN 110


>gi|284799462|ref|ZP_05984049.2| ribonuclease E [Neisseria subflava NJ9703]
 gi|284797933|gb|EFC53280.1| ribonuclease E [Neisseria subflava NJ9703]
          Length = 989

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 207/630 (32%), Positives = 315/630 (50%), Gaps = 10/630 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 34  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 93

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 94  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 153

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 154 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 212

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MPS
Sbjct: 213 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 272

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 273 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 332

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 333 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 392

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 393 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 452

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 453 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 512

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +        ++    +       E          +      +        ++++  
Sbjct: 513 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWW 572

Query: 628 IRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   +R           A   ++  +  N   +S             N   +G+   
Sbjct: 573 DSFKAWLKRIFGGEPAPVAVAQEPAEKRTTNNRSQNSNRRSNSRRQNPRRNNKNDGSKVE 632

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +      S  E   SN S +   K T
Sbjct: 633 VREVNA-EAVDSKFEENKSNESRNDERKDT 661



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 26  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 85

Query: 63  GNRHGFLPFLEIHPDYYQ 80
            +RHGFLPF E+   Y++
Sbjct: 86  TDRHGFLPFKEVSRSYFR 103


>gi|269139454|ref|YP_003296155.1| ribonuclease, Rne/Rng family [Edwardsiella tarda EIB202]
 gi|267985115|gb|ACY84944.1| ribonuclease, Rne/Rng family [Edwardsiella tarda EIB202]
          Length = 1069

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 203/643 (31%), Positives = 311/643 (48%), Gaps = 19/643 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPSNYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK  +  L  P
Sbjct: 188 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S+ALSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R   V + VV   ++    + + +  
Sbjct: 428 ALKENTREVHAIVPVPVASYLLNEKRDAVSAIEKRQPDVRVIVVPNEQMQTPHYAVMRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      +K+    +A +  +      +     P   + SL+     I + +   V  
Sbjct: 488 KGEETHTLSYKLPQLHEAEACGEEEVPAERKRPEQPALAAFSLDVAAPPIDAAQDKPVAV 547

Query: 630 KRRRRRRRRRPATDHHD----------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                  R +P  D              G+ +   +   V ++      E     + +  
Sbjct: 548 D-VAPTERPQPVADARPGLFGRLVASLKGIFAGDDAPAPVQEEKPAASAERPRDESRSSQ 606

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           E          +           E       P   +      R
Sbjct: 607 ERRGRRQNPRRERGERGDRPERGERPERGERPERGERPERGER 649



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|304321510|ref|YP_003855153.1| ribonuclease E [Parvularcula bermudensis HTCC2503]
 gi|303300412|gb|ADM10011.1| ribonuclease E [Parvularcula bermudensis HTCC2503]
          Length = 1038

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 267/658 (40%), Positives = 368/658 (55%), Gaps = 8/658 (1%)

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           L   E+  D      +   A   +  +A   +   A+          +  S +E +    
Sbjct: 290 LADSEVLSD-----EALADAEKSDPPLADDGNAPRAEKTDQPVADGESAPSDDEESAAEE 344

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
              +  + +   A+          +         +  R Y IQEVIK RQ++LVQ+VKEE
Sbjct: 345 PKGKANDTAPSPASEQAQIAALQKRYDEARRERDRLLRNYRIQEVIKRRQVMLVQVVKEE 404

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
           RGNKGAA+TT+LSLAGRY VLMPN ++G  +SRKI+N  DR+ L++    L VPAG G+I
Sbjct: 405 RGNKGAALTTFLSLAGRYGVLMPNNARGGGVSRKISNQSDRRRLRKAMAELNVPAGQGLI 464

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +RTAGA RTK EIKRD++YL RLWD +R   L SVAP L+YEE +LIKRAIRDLY KD +
Sbjct: 465 IRTAGAKRTKAEIKRDYDYLARLWDTIRSQTLQSVAPCLIYEEASLIKRAIRDLYDKDTA 524

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
           EI+V GE GYREAKDFMK+LMPS+A+ V+ Y +  P+F   G+E QLD ++Q  VTL S 
Sbjct: 525 EILVEGEDGYREAKDFMKMLMPSHAKNVQPYREQEPLFLHYGVERQLDEMYQPVVTLKSG 584

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
           GY++I QTEAL+SIDVNSG+ST+E  +E TAL+TN EAA E+ARQ RLRDLAGLIVVDFI
Sbjct: 585 GYLVIQQTEALISIDVNSGKSTKERNVEATALKTNSEAAVEVARQCRLRDLAGLIVVDFI 644

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488
           DM+E +NNR+VEKK KE+LK DRAR+QVG+IS FGLLEMSRQR RS +++ TT+ C  C 
Sbjct: 645 DMDENRNNRTVEKKFKEALKSDRARIQVGSISTFGLLEMSRQRRRSGIVDGTTRTCPTCD 704

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           GAG +RS    AL ILR++EE      A ++      DV LY+LNQKR  + + EA +G 
Sbjct: 705 GAGAVRSVEMAALRILRAIEEKAASDKAASVTASAALDVSLYILNQKRDWLNQIEATYGC 764

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIP 607
            I V    +     + +     ++          + +   S     +    D +      
Sbjct: 765 RITVEGDSDKNGDQYELTVSGRLKEEETLRQGSSAAAVDASSLLENDEQQDDGDTPKEAA 824

Query: 608 KSESLEDIQDNIVSEESTGVIRK-RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
            S+S +  Q +  +++ T      + ++RRRRR   +   A    +  S         + 
Sbjct: 825 ASDSDDPEQKSQKADDETAEGGDGKPKKRRRRRRKRNADSAETKGETESRAPSQPTENET 884

Query: 667 YMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E            +      +         +  + +++    D         +RRK
Sbjct: 885 KDEQIEAGAAEPNAGSVKDQSPQQGAAEEQAGTQVDGQTAAKDKDSEAAPKPARRRRK 942



 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/151 (45%), Positives = 91/151 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KM+IDA H EETRV VL + +VE+ DFES  +K ++GNIYLA+VTRVEPSLQAAF++
Sbjct: 1   MTKKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIH DYYQIP +DR+ L     +    +  +AD    G V I ++  +
Sbjct: 61  YGGNRHGFLAFGEIHSDYYQIPVADREVLRAAEALEAELAAKLADFDQAGVVDIEDEGDV 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVED 151
            +          T   S    ++    +  +
Sbjct: 121 VDTQGDLESEDGTSSTSAADDDDGDSGDDGN 151



 Score = 53.1 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 5/161 (3%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E  +P Q   N       ++ A   +         +      ++ +  D Q     ++S 
Sbjct: 872  ESRAPSQPTENETKDEQIEAGAAEPNAGSVKDQSPQQGAAEEQAGTQVDGQTAAKDKDSE 931

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +  RRRR+  +PA +       ++  S             E +D             
Sbjct: 932  AAPKPARRRRKPAQPAAETDSGPSDTEKDSPSPQQAAPRAKATETADQEAGQSSPPKTDA 991

Query: 686  FTENYDVSIPPVST-----PEMESSNSSSDPIVKKTRWWKR 721
              +    S PP +      P  +S+     P  K+  WW+R
Sbjct: 992  PADKAQPSEPPRAAETIHAPLEDSAQGEDKPAPKRGGWWQR 1032


>gi|78047979|ref|YP_364154.1| ribonuclease E [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036409|emb|CAJ24100.1| ribonuclease E [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 1216

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 214/638 (33%), Positives = 321/638 (50%), Gaps = 11/638 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +    +G              +         +   P   S++  Q   V EE+   +  
Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAP 547

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPS--DITNHNLLENGAHG 685
                            GVV  +  I      +  + +    P   D    N  E G  G
Sbjct: 548 VAAPAPVVTVPIPAPITGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRSNRGERGERG 607

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                            +   +  +           R+
Sbjct: 608 GQRRDGRDARNGGNGGNQQRGNGGNGNGANKERRDERR 645



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|237748408|ref|ZP_04578888.1| ribonuclease E protein [Oxalobacter formigenes OXCC13]
 gi|229379770|gb|EEO29861.1| ribonuclease E protein [Oxalobacter formigenes OXCC13]
          Length = 977

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 188/557 (33%), Positives = 292/557 (52%), Gaps = 2/557 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   I++ +   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR++  
Sbjct: 85  RSAAIKDAMTEGQEIMVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    LEVPAGM +I RTAG  R+  E++ D  YL++LW+ +     ++   
Sbjct: 145 EERQE-LREAMDKLEVPAGMSIIARTAGIGRSTEELQWDLNYLLQLWNAIEGAGSSAPGA 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L+ RAIRD +  DI EI++  ++ Y +A+ FM  +MP     V++Y D  P+
Sbjct: 204 FLIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQARQFMSHVMPDMVNRVKRYRDDVPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++ +   V+LPS G ++I+ TEALV++DVNS RSTR   IE TA  TN E
Sbjct: 264 FSRFQIEHQIETAYSRVVSLPSGGSIVIDHTEALVAVDVNSARSTRGTDIETTAFNTNCE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQLRLRDL GLIV+DFIDME  KN R +E +LKE+L  DRARVQ+  I+ FGL+
Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMESAKNRREIENRLKEALHYDRARVQMDKITRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R S+ E +   C  C G G+IR   S AL +LR +EE  ++ ++  I V    
Sbjct: 384 ELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIEEESMKESSAVIHVQIPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH-KVGSD 584
           DV  +LLN+KR  I++ E R  V I ++    L    + +E+       +          
Sbjct: 444 DVAAFLLNEKRGEIMKVENRHKVEIVLIPNTHLETPHYKLERIKHDDPRLEEPQVSYKLA 503

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
            Q+       +   +    +     +++ +        E   V +++    +        
Sbjct: 504 EQSDDDMSFAKRQKEPVKPVQEAMVKNIPEGIPAAPVVERKPVAQEQGFFSKLLGIFGIG 563

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
            +                         +   +    +       +    +      +   
Sbjct: 564 KEETPAEPEEKPAKNNARKGRNNDRNRNRNRNRGERDDKARTPVSPATPVAAAPEADETE 623

Query: 705 SNSSSDPIVKKTRWWKR 721
           + ++     ++ +   R
Sbjct: 624 NANAGQKRGRRPKNADR 640



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D ES  ++  K NIY A +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIESNSRELHKSNIYKAVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+    ++     R A +K++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSLFKDGVDVRSAAIKDAMTEGQEIMVQVEKEERGN 110


>gi|27379416|ref|NP_770945.1| ribonuclease E [Bradyrhizobium japonicum USDA 110]
 gi|27352567|dbj|BAC49570.1| ribonuclease E [Bradyrhizobium japonicum USDA 110]
          Length = 1032

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 274/478 (57%), Positives = 355/478 (74%), Gaps = 2/478 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
               +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+
Sbjct: 320 EEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 379

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKIT+  DR  LKE+ + L+VP GMG+ILRTAGA+RTK EIKRDFEYL+R+W+ 
Sbjct: 380 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIRMWET 439

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VR+L L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GYREA+DFMK+LMP+   
Sbjct: 440 VRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEISVAGESGYREARDFMKMLMPANVS 499

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+QY D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGRSTREH 
Sbjct: 500 AVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 559

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IEDTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+
Sbjct: 560 IEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARI 619

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS+FGLLEMSRQRIR+SVLES+T  C +C G G++RS SSVAL +LR +EE L++ 
Sbjct: 620 QVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHVRSVSSVALQLLRGLEEILMKG 679

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIEKGSPVQA 573
             HN++V T +DV LY+LN KR  + + E  F V++ V+    ++    + I++G  V  
Sbjct: 680 ATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTLAVIADPSVSGPQAYLIDRGEQVHT 739

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           L      + + + A S    +E  + DE   P  +SE   +  + +  E++ G     
Sbjct: 740 LEAAKALLAAQAAA-SPPPVVEEAYDDEEFDPELESEIESEETEGLTEEQAAGEAAPE 796



 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 74/106 (69%), Positives = 89/106 (83%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD 106
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E  +++
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESEN 106


>gi|83719665|ref|YP_442242.1| ribonuclease E [Burkholderia thailandensis E264]
 gi|257138435|ref|ZP_05586697.1| ribonuclease E [Burkholderia thailandensis E264]
 gi|83653490|gb|ABC37553.1| ribonuclease E [Burkholderia thailandensis E264]
          Length = 1068

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|299133773|ref|ZP_07026967.1| ribonuclease, Rne/Rng family [Afipia sp. 1NLS2]
 gi|298591609|gb|EFI51810.1| ribonuclease, Rne/Rng family [Afipia sp. 1NLS2]
          Length = 974

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 297/648 (45%), Positives = 387/648 (59%), Gaps = 13/648 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P  D      E         A  D+              E V      S E E++     
Sbjct: 216 PEGDFAHHDDEHLHDHDHDHASDDEAHDDTYADHEHSESEHVESSVAHSDEDEDDDEAEE 275

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
              V S   D       +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLS
Sbjct: 276 EEQVESVGGDDALEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLS 335

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY+VLMPNT++G  ISRKIT+  DR  LK++ + L+VP GMG+ILRTAGASRTK EI
Sbjct: 336 LAGRYAVLMPNTARGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEI 395

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRDFEYL+R+W+ VR+L L S AP LVYEEG+LIKR++RDLY K+I E++VSG+ GY+EA
Sbjct: 396 KRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVSGDAGYQEA 455

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           +DFMK+LMPS  R V+ Y D  P+F R G+E QLD++    VTL S GY++INQTEALVS
Sbjct: 456 RDFMKMLMPSSVRAVKPYRDTQPLFSRMGVESQLDAMFSPTVTLRSGGYIVINQTEALVS 515

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSGRSTREH IEDTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+
Sbjct: 516 IDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVER 575

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           K+ + L++DRAR+QVG IS+FGLLEMSRQRIR+SVLES+T+ C  C G G++RS SSVAL
Sbjct: 576 KMSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPTCGGTGHVRSVSSVAL 635

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +LRS+EE L++   HN  V T +DV LY+LN KR  + + E  F V+++V+    +  +
Sbjct: 636 QLLRSLEEQLMKSGTHNYSVRTRTDVALYVLNHKRGHLRDLEEAFQVTLSVIADTTVNGQ 695

Query: 562 L-FYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKNIECVWQDEALLPIPKSES 611
             F IE+G  V         + +   A            +   E V  +        +E+
Sbjct: 696 QAFIIERGEQVHTTEAAKALLAARVAAQPVEVEEFDDEDEFFEEDVEAEAENGETADAET 755

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH---DAGVVSDVSSIQNVIDDSFDMYM 668
            E   +           R+ R R    R AT      D  V  + S ++   D   +   
Sbjct: 756 TEARGEGDEGPRRRRRRRRGRGRGGEGRDATQASPANDDAVSGEESQVETGEDGEDESDA 815

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            P+     N                         E + +S +     +
Sbjct: 816 APARADQDNGERRPRRRGRRGGRRRRGNHDNANGEEAAASGNDTEADS 863



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/93 (77%), Positives = 82/93 (88%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M NKMLIDA+H EETRVVV+R NRVEE DFES  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1  MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93
          YGGNRHGFL F EIHPDYYQIP +DRQAL++  
Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAD 93


>gi|307131543|ref|YP_003883559.1| RNase E [Dickeya dadantii 3937]
 gi|306529072|gb|ADM99002.1| RNase E [Dickeya dadantii 3937]
          Length = 1065

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 204/634 (32%), Positives = 310/634 (48%), Gaps = 20/634 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WEAIKKAAEGRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGMETPHYSVLRVR 490

Query: 570 PVQALVNTGH----------KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
             +      +          +   D Q P      +       +  IP +E+        
Sbjct: 491 KGEEKQTLSYMLPQLLDVESQTSPDEQVPERRVPEQPALASFTMSDIPPAETKPAPVVAA 550

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             EE      +R    R          A   +   S + V   S +   E      +N  
Sbjct: 551 PKEEKQPASSERGLFGRLVGALKGIFAAPADAGAKSAETVDVASDE--QEQKQERRNNRR 608

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           ++G    T +             + +   +  I 
Sbjct: 609 QSGRRERTRDNREPRERDEQRRNKRTQPQNADIE 642



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|304559349|gb|ADM42013.1| Ribonuclease E [Edwardsiella tarda FL6-60]
          Length = 1072

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 203/643 (31%), Positives = 311/643 (48%), Gaps = 19/643 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK  +  L  P
Sbjct: 191 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S+ALSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R   V + VV   ++    + + +  
Sbjct: 431 ALKENTREVHAIVPVPVASYLLNEKRDAVSAIEKRQPDVRVIVVPNEQMQTPHYAVMRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      +K+    +A +  +      +     P   + SL+     I + +   V  
Sbjct: 491 KGEETHTLSYKLPQLHEAEACGEEEVPAERKRPEQPALAAFSLDVAAPPIDAAQDKPVAV 550

Query: 630 KRRRRRRRRRPATDHHD----------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                  R +P  D              G+ +   +   V ++      E     + +  
Sbjct: 551 D-VAPTERPQPVADARPGLFGRLVASLKGIFAGDDAPAPVQEEKPAASAERPRDESRSSQ 609

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           E          +           E       P   +      R
Sbjct: 610 ERRGRRQNPRRERGERGDRPERGERPERGERPERGERPERGER 652



 Score =  137 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|119775124|ref|YP_927864.1| ribonuclease E [Shewanella amazonensis SB2B]
 gi|119767624|gb|ABM00195.1| RNAse E [Shewanella amazonensis SB2B]
          Length = 1141

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 212/663 (31%), Positives = 325/663 (49%), Gaps = 38/663 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 37  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 96

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 97  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 156

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVP GMG+I+RTAG  +   E++ D + L+
Sbjct: 157 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPNGMGLIVRTAGVGKDAAELQWDLKVLL 215

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           R WD ++E + +   P L+++E N+I RAIRD   +D+ EI++   K + +AK  +  + 
Sbjct: 216 RHWDAIKEASESGPGPMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIFEQAKQHIATVR 275

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+QY+   P+F    IE Q++S  Q EV LPS G ++I+ TEA+ SID+NS R+
Sbjct: 276 PDFVERVKQYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAMTSIDINSARA 335

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++ +
Sbjct: 336 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVHQ 395

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 396 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTESLALSILRLMEE 455

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     +      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 456 EAIKDNTSQVEAIVPVDVAAFLLNEKRKAIRIIEQRHEVEVYVIPDPHMMTPEYKVIRHR 515

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI---------------ECVWQDEALLPIPKSESLED 614
               +    +K     +A  Y+                    +    A  P  +++ ++ 
Sbjct: 516 QDDEIEEASYKRVEKPEAKLYEPRKLERAQAPEPVLKGFSAPLESPPAAAPKVEAKPVKA 575

Query: 615 IQDNIV--------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
             +                   ++T    K+   R  R+  T   +    +     +   
Sbjct: 576 ASEVKPGFFSRLFAAIGSLFGGDNTETEEKKAPARNGRQQNTRGRNRRNDNRRDDGRQ-- 633

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
            +         D    +  +  +       +           + S+   D   K+ R  K
Sbjct: 634 -EGRSADSRRDDSRREDGDKRRSSDSRRGRNKPEQADDKQLRDKSDKPRDERPKRERAPK 692

Query: 721 RRK 723
           R K
Sbjct: 693 REK 695



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 95/707 (13%), Positives = 187/707 (26%), Gaps = 41/707 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 29  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 88

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             RHGFLP  EI  +Y+  P               ++ + V   +   +           
Sbjct: 89  AERHGFLPLKEIAREYF--PKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTF 146

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
           ++   ++             +  +   E  +        +       I       +    
Sbjct: 147 ISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPNGMGLIVRTAGVGKDAAE 206

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
                +   +        S +G   +L+   S     + +     D   +      +   
Sbjct: 207 LQWDLKVLLRHWDAIKEASESGPGPMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIFEQ 266

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
           A   +            + K +           +  +       L      +I       
Sbjct: 267 AKQHIATVRPDFVERVKQYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAMT 326

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
                S     G      A +         AR +R  +    I         +      +
Sbjct: 327 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH----Q 382

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
             + +R    ++Q  A V +   S     E   +         AA    R         +
Sbjct: 383 REVENRLRDAVHQDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPR---CHGQGTI 439

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
              + + +        + + ++E   KD    QV AI    +        R ++      
Sbjct: 440 RGTESLALS-------ILRLMEEEAIKDNT-SQVEAIVPVDVAAFLLNEKRKAIRI---- 487

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA----T 538
                     I  +  V + ++        +Y           +   Y   +K       
Sbjct: 488 ----------IEQRHEVEVYVIPDPHMMTPEYKVIRHRQDDEIEEASYKRVEKPEAKLYE 537

Query: 539 IVEYEARFGVSINVVI------GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
             + E        +            A      +       +          +    +  
Sbjct: 538 PRKLERAQAPEPVLKGFSAPLESPPAAAPKVEAKPVKAASEVKPGFFSRLFAAIGSLFGG 597

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
           +     + +A     + ++         +    G    R    RR     +  D    SD
Sbjct: 598 DNTETEEKKAPARNGRQQNTRGRNRRNDNRRDDGRQEGRSADSRRDDSRREDGDKRRSSD 657

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
               +N  + + D  +        +               ++     
Sbjct: 658 SRRGRNKPEQADDKQLRDKSDKPRDERPKRERAPKREKPETVEAADD 704


>gi|332993477|gb|AEF03532.1| RNase E [Alteromonas sp. SN2]
          Length = 1100

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 209/670 (31%), Positives = 322/670 (48%), Gaps = 45/670 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  ++        
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +      +F+ +  I++VIK  Q +++QI KEERG KGAA+TT+LSLAG Y VLMP
Sbjct: 72  EIARTYFPKGYRFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKESLNKLDLPDGMGLIVRTAGVGKSYEELEWDLKVLLTH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ + ++A    AP L+++E N+I RAIRD   +DI EI++     Y +A   ++L+ P 
Sbjct: 191 WEAISKVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A  V+ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++K++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ +S   VC  C G G IR   S+ALSILR +EE  
Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGDSAHHVCPRCSGHGTIRGTESLALSILRILEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     I       V  YLLN+KR  I   E R GV++ ++    L    + + +  P 
Sbjct: 431 IKENTGQIEAQLPVSVATYLLNEKRKAIQSLEKRHGVNLLLIPNANLETPHYQVTRRRPD 490

Query: 572 QALVNTGHKVG--SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI- 628
             L +  ++V      +  +       V ++E  L    + +   +              
Sbjct: 491 DILDDASYEVELMPTVETETETTTSVPVKREEPALKGLVAPTAAPVVAPKAETPEAKAES 550

Query: 629 -----------------------------------RKRRRRRRRRRPATDHHDAGVVSDV 653
                                              ++   R  R    + + +       
Sbjct: 551 SPSLFARIGKWLGDVLGGEDEKAKAEAEAKEKEKQKQSESRNNRGGNQSRNRNGDDRRRK 610

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                  +   +   E    T  +  ++              P    +    + S D   
Sbjct: 611 PRKNTRRNQPQNKDGEQEQRTPRSEQDDKPRASNNKPRKPRKPRDETQKPKQDQSRDNAQ 670

Query: 714 KK-TRWWKRR 722
            +  +   R+
Sbjct: 671 DEAPKTQDRK 680



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+ +EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI   Y+
Sbjct: 62 ADRHGFLPLKEIARTYF 78


>gi|34497275|ref|NP_901490.1| ribonuclease E [Chromobacterium violaceum ATCC 12472]
 gi|34103131|gb|AAQ59494.1| probable ribonuclease E [Chromobacterium violaceum ATCC 12472]
          Length = 981

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 215/680 (31%), Positives = 314/680 (46%), Gaps = 53/680 (7%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  +       
Sbjct: 10  QAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTERHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V++    ++VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQGYDGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK++   LEVP GM +I RTAG  R   E++ D  YLM+L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKDLLSQLEVPHGMSLIARTAGIGRNLEELQWDLGYLMQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A    AP L+ +EG+L+ RAIRD +  DI E+++  E+ + +A+ FM  +MP+
Sbjct: 189 WRAIEGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTEEIHDQARQFMSHVMPN 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V+ Y+D  P+F R  IE Q+++     V LPS G ++I+ TEALVSIDVNS R+T+
Sbjct: 249 MLSRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSIDVNSARATK 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA++TNLEAAEEIARQLRLRDL GL+V+DFIDME  KN R VE +L++ LK DR
Sbjct: 309 GADIEETAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQRDVENRLRDVLKHDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ S+ E++ + C  C G G+IR   S AL ILR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHILRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA I   E R  V + ++  I L    + I +    
Sbjct: 429 MKENTGAVHAQVPVDVATFLLNEKRAEIHSIEERLDVDVVLIPNIHLETPHYKIVRVRHD 488

Query: 572 QALV-------------NTGHKVGSDSQAPSYDKNIECVWQ------------------- 599
                                      + P  ++    V                     
Sbjct: 489 DVAELGEAPSYTRVEVQEEDVITNFGQEKPKVERQEAAVKGITPQQPAPSASVSAAAKPV 548

Query: 600 -----------------DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
                             E      +    + +Q +    E  G  ++   RR   +   
Sbjct: 549 EQGGLFAGIAAWFKGLFAEPEKAPVQDAKKKPVQSSSRGNEQRGNRQRPHERRTGGQARR 608

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
           +H                D+  D                       N           E 
Sbjct: 609 EHEQRRNGQQDEGKSRRPDERKDAERAERADRPERKEAPSRDREERNEQPRERGSRRRER 668

Query: 703 ESSNSSSDPIVKKTRWWKRR 722
           E         V++    + R
Sbjct: 669 EGREPREPKEVREQAPREER 688



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLPF E+   Y+Q
Sbjct: 62 TERHGFLPFKEVSRSYFQ 79


>gi|285018395|ref|YP_003376106.1| ribonuclease e protein [Xanthomonas albilineans GPE PC73]
 gi|283473613|emb|CBA16116.1| probable ribonuclease e protein [Xanthomonas albilineans]
          Length = 1112

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 211/602 (35%), Positives = 315/602 (52%), Gaps = 10/602 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  +          
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L +P  MGVI+RTAG  R   E++ D EYL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLTIPDDMGVIIRTAGVGRDAEELQWDLEYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W ++ E AL   AP L+Y+E  LI RA+RD    DI EI+V   + Y +AK+FM+ +MP
Sbjct: 189 VWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTVEMYGDAKEFMQQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q+++ ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L+ +LK D
Sbjct: 309 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR  + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLQTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +    +               +       +A L IP + ++  +Q +  +         
Sbjct: 489 NELGEESTKPSYQRGTPRKLPVHAL----TKAQLNIPPAPAVTHVQHSQPAPLRETAEAT 544

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                    P +       +  V  ++ +   S +    P+                 N 
Sbjct: 545 TAAPALMPPPPSVTATP-AIGIVGWLKRIFGASENQAQAPTAPEPAQRQRPQDGNRNRNG 603

Query: 691 DV 692
           D 
Sbjct: 604 DR 605



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFV+YG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           G RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  GERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGN 110


>gi|239997983|ref|ZP_04717907.1| Rne [Neisseria gonorrhoeae 35/02]
 gi|240017487|ref|ZP_04724027.1| Rne [Neisseria gonorrhoeae FA6140]
 gi|240113909|ref|ZP_04728399.1| Rne [Neisseria gonorrhoeae MS11]
 gi|240118864|ref|ZP_04732926.1| Rne [Neisseria gonorrhoeae PID1]
          Length = 927

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 18  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 78  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 436

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRRNPRRSKREGSKIEVREA 616

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 677 GQTGKRRR 684



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 70 TDRHGFLPFKEVSRSYF 86


>gi|189349900|ref|YP_001945528.1| ribonuclease [Burkholderia multivorans ATCC 17616]
 gi|189333922|dbj|BAG42992.1| ribonuclease [Burkholderia multivorans ATCC 17616]
          Length = 1054

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 191/468 (40%), Positives = 281/468 (60%), Gaps = 3/468 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I
Sbjct: 83  DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW  +   + +  
Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201

Query: 284 A--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
              P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP     V++Y D
Sbjct: 202 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 261

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +
Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK DRARVQ+G IS 
Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  ++     I  
Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
               +V  +LLN+KR  I + E+RF V I ++    L    + +E+     A ++     
Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              ++  + +   E  +   A    PK E+            S    R
Sbjct: 502 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSPAPQR 549



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|238762183|ref|ZP_04623155.1| Ribonuclease E [Yersinia kristensenii ATCC 33638]
 gi|238699530|gb|EEP92275.1| Ribonuclease E [Yersinia kristensenii ATCC 33638]
          Length = 1137

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 201/675 (29%), Positives = 315/675 (46%), Gaps = 57/675 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTYEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLP---------IPKSESLEDIQDNI 619
             + +    + +        +       + +     P             ES   +    
Sbjct: 488 KGEEVPTLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPPESAPAVTTVK 547

Query: 620 VS---------------------------------------EESTGVIRKRRRRRRRRRP 640
            +                                       E++     +R  RR  RR 
Sbjct: 548 PTVAPQKTDAAVEQPGFFSRLLSGLKDIFGTSAEEIKPVEVEKTETSENRRNDRRNPRRQ 607

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             +  D G  +      N   D+        D  N +                    + P
Sbjct: 608 NNNRKDRGDRTPREGRDNSSRDNSSRDNSGRDNANRDNSNREGREDQRRNKRPTQQTAAP 667

Query: 701 EMESSNSSSDPIVKK 715
             ++    +D   ++
Sbjct: 668 LAQTEVVEADKAQRE 682



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|241758906|ref|ZP_04757018.1| ribonuclease E [Neisseria flavescens SK114]
 gi|241320727|gb|EER56960.1| ribonuclease E [Neisseria flavescens SK114]
          Length = 988

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 206/631 (32%), Positives = 320/631 (50%), Gaps = 11/631 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 34  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 93

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 94  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 153

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 154 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 212

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MPS
Sbjct: 213 WKAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 272

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 273 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 332

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 333 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 392

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 393 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 452

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 453 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 512

Query: 572 QALVNTGHKVGSDSQAPSYD-------KNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
               +        ++    +       +  +    + A+  +  ++    + +       
Sbjct: 513 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPVVAEQKNGSWW 572

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                  +R       A     A V    +S  +  + +       +   N         
Sbjct: 573 DSFKAWLKRIFGGNTAAETAPVAEVAEKRTSNGDNRNGNSGNRRANNRRQNPRRNNRHDG 632

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              E  +V+   V +   E+ ++ S    +K
Sbjct: 633 SKVEVREVNAEAVDSKFEENKSNESRNDERK 663



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 26  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 85

Query: 63  GNRHGFLPFLEIHPDYYQ 80
            +RHGFLPF E+   Y++
Sbjct: 86  TDRHGFLPFKEVSRSYFR 103


>gi|313201078|ref|YP_004039736.1| Rne/Rng family ribonuclease [Methylovorus sp. MP688]
 gi|312440394|gb|ADQ84500.1| ribonuclease, Rne/Rng family [Methylovorus sp. MP688]
          Length = 913

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 212/647 (32%), Positives = 316/647 (48%), Gaps = 27/647 (4%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            ++    A+ D     D+ I +    +  + I        E S+ +A  +  ++      
Sbjct: 10  QSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  +          +  IQ+V+K  Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVARSYFQNDSDGRARIQDVLKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I        L+++   LEVP GM +I RTAG  R   E++ D  YL++L
Sbjct: 130 NNPRGGGVSRRIEGEDR-NELRDLMAQLEVPNGMSIIARTAGIGRNIEELQWDLNYLLQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   +     P L+Y+EG+L+ RAIRD +  DI EI++     + +A  FM  +MP 
Sbjct: 189 WTAIEGASTMQSGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQFMNHVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V+ Y D  P+F R  IE Q+++    EV LPS G ++I+ TEALVS+DVNSGRST+
Sbjct: 249 NVSRVKLYRDEIPLFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVDVNSGRSTK 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE TA  TNLEAA+E+ARQLRLRDL GL+V+DFIDME ++N R VE +L+++L  DR
Sbjct: 309 GSDIEHTAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLRDALHHDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ G IS FGLLE+SRQR+R S+ ES    C  C G G+IR   S AL ILR  +E  
Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHILRITQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  I V    +   +LLN+KRA I + E R GV + ++  I +    + I +    
Sbjct: 429 MKENSAIIQVQLPVEAATFLLNEKRAEIHKIEQRSGVQVVLIPNIHMETPNYNISRIRSD 488

Query: 572 QALVNTGHKV-------------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                T                  +  Q     +    V       P P +         
Sbjct: 489 DVNEETSRASYQMVELPTEGEYNPAAQQEVKAVRAEAAVKGITPASPAPIATEKAVEVPA 548

Query: 619 IVSEEST--------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
             S               ++        +  +D++        ++  N    + +    P
Sbjct: 549 APSLFGRFKNWLSKITETKEEVVAPETTKQRSDNNRNNRNQPRNARNNRNGRNGERSERP 608

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           +   N        +   E  +   P     E +   +  +P  ++ R
Sbjct: 609 AAERNAERGSERNNERAERGER--PANERSERQERGNRQEPRQQEGR 653



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY   +TR+EPSL+AAFV+YG
Sbjct: 2   KRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y+Q   SD +A +++      +     D    G+
Sbjct: 62  TDRHGFLPFKEVARSYFQN-DSDGRARIQDVLKEGQELIVQVDKDERGN 109


>gi|86750126|ref|YP_486622.1| ribonuclease [Rhodopseudomonas palustris HaA2]
 gi|86573154|gb|ABD07711.1| RNAse E [Rhodopseudomonas palustris HaA2]
          Length = 1060

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 289/603 (47%), Positives = 387/603 (64%), Gaps = 10/603 (1%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151
                Q   +   D++   D     + +        +  ++ +E+     +       +D
Sbjct: 257 AEGAEQEHGDDAGDELNDADGDADLEDAARSDTEADDEDEDEDEDDEAEEDIVESVGGDD 316

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           V    PE    + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMP
Sbjct: 317 VLEEVPERA-FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMP 375

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           NT++G  ISRKIT+  DR  LKE+ + L+VP GMG+ILRTAGASRTK EIKRDFEYL+R+
Sbjct: 376 NTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRM 435

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM +LMPS
Sbjct: 436 WETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHMLMPS 495

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             R V+ Y D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGRSTR
Sbjct: 496 NVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTR 555

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           EH IEDTAL+TNLEA+EE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DR
Sbjct: 556 EHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDR 615

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L
Sbjct: 616 ARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEIL 675

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSP 570
           ++   HN+IV T +DV LY+LNQKR  + + E  F V+++VV    +   + F I++G  
Sbjct: 676 MKGATHNLIVRTRADVALYVLNQKRGHLRDLETGFRVTLSVVSDPTVTGQQSFVIDRGEQ 735

Query: 571 VQALVNT-------GHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSE 622
           V  L +               ++ P  D        +         ++           E
Sbjct: 736 VHTLESAKALLAAQVAAYPVQAEEPFEDDEGYEFEAEIETDETVGLADEHASDSGEGEGE 795

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                 ++RRRRR R   A +        D + +  V++   +   E  D +      +G
Sbjct: 796 GDARKRKRRRRRRSRTGEAREAGAPREDGDAALVPEVLEAVSEDDSEDGDDSADGAEGDG 855

Query: 683 AHG 685
              
Sbjct: 856 DAR 858



 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 100/169 (59%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E   +  +    +    H  
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSTRRRSRHRSHRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC 169
                             ++  +D  S++ D             +R   
Sbjct: 121 RGSGERVTSEIVEASAGAVAEPHDQFSDLADSDPADNGHAHADHERPMH 169


>gi|152979950|ref|YP_001353036.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille]
 gi|151280027|gb|ABR88437.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille]
          Length = 974

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 188/466 (40%), Positives = 275/466 (59%), Gaps = 3/466 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   I++ ++  Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN  +G  +SR++  
Sbjct: 85  RNASIKDALREGQEIMVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    L++P GM VI RTAG  R   E++ D  YLM+LW  +     +    
Sbjct: 145 EDRQE-LRETMDKLDLPQGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSGGGA 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y+E +L+ RAIRD +  DI EI++  ++ Y +A+ FM  +MP     V++Y D  P+
Sbjct: 204 FLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAQQFMSHVMPDMVHRVKRYRDDVPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++ +   V LPS G ++I+ TEALVS+DVNS R+TR   IE TA  TN E
Sbjct: 264 FSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRGSDIETTAFHTNCE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQLRLRDL GLIV+DFIDME  KN R VE +LK++L  DRARVQ+G IS FGL+
Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMENAKNQREVETRLKDALHYDRARVQMGKISRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  ++  + +I V    
Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENSASIHVQAPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV  +LLN+KR  I++ E R  VS+ ++    L    + +E+       +       + +
Sbjct: 444 DVAAFLLNEKRGEILKIETRHRVSVILIPNKHLETPHYKLERIKHDDPRLEETQASYAMT 503

Query: 586 QAPSYDKNIECVWQDE--ALLPIPKSESLEDIQDNIVSEESTGVIR 629
           +    D +     ++E              D    IV  +     +
Sbjct: 504 EEADTDISYGKRQKEEGKPRQEAMVKGITPDQPAPIVERKPVEAAK 549



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q K NIY   +TR+EPSL+A FV YG
Sbjct: 2   KRMLFNATQQEELRVAIVNGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A +K++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGN 110


>gi|238789121|ref|ZP_04632910.1| Ribonuclease E [Yersinia frederiksenii ATCC 33641]
 gi|238722885|gb|EEQ14536.1| Ribonuclease E [Yersinia frederiksenii ATCC 33641]
          Length = 1171

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 190/541 (35%), Positives = 292/541 (53%), Gaps = 9/541 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +       + +     P   + SL        +  +T V 
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATMERKRPEQPALATFSLPTEVPPESAPAATAVK 547

Query: 629 R 629
            
Sbjct: 548 P 548



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|119897904|ref|YP_933117.1| ribonuclease E [Azoarcus sp. BH72]
 gi|119670317|emb|CAL94230.1| probable ribonuclease E [Azoarcus sp. BH72]
          Length = 1014

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 218/653 (33%), Positives = 319/653 (48%), Gaps = 37/653 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D     D+ I +    +  + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +       P     +  I+E ++  Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLM
Sbjct: 70  FKEISRSYFQPGVDAGKASIKEALREGQELIVQVEKDERGNKGAALTTYISLAGRYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR++      + L+++   LEVP GM +I RTA   R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRVEGDERAE-LRDVMDQLEVPGGMSLIARTAAIGRSAEELQWDLNYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A +     L+Y+EG+L+ RAIRD +  +I EI++  +  Y +A+ FM  +MP
Sbjct: 189 LWTAIEGAATSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDIYEQARQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y+D  P+F R  IE Q++S +  +V LPS G V+I+ TEALVSIDVNSGR+T
Sbjct: 249 GNVNRVKRYQDDVPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSIDVNSGRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+EIARQLRLRDL GLIV+DFIDME +KN R VE +L+++L+ D
Sbjct: 309 KGADIEETAFRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVENRLRDALRHD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGLLE+SRQR+R ++ E++   C  C G G+IRS  S AL I+R +EE 
Sbjct: 369 RARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALHIVRILEEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     + +    DV  +LLN+KR  I   E R  V + +V    L      I +   
Sbjct: 429 AMKENTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPQHEIIRLRH 488

Query: 571 VQALVNTGHKV-------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--- 620
            Q  +              +D +     KN +   + EA +     E    I +      
Sbjct: 489 DQLNLEDIALASYQMVQKPADEEMRLPTKNGDKPARQEAAVKGISPEQPAPIVEARAEAA 548

Query: 621 ----------------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
                                   E              +R A    +    +   +   
Sbjct: 549 PAPAAVAPAPRRGLLDWILGLFRSEPAPAATPAPAETPAKREARPRGERNGDARRGNGNR 608

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
              +      E    T     ENG H   E  +         E       +D 
Sbjct: 609 NRREGQRERTERDGETPRARPENGRHARGERSESVEREKPQQERAERPERADR 661



 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/109 (42%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY A +TR+EPSL+AAFVDYG
Sbjct: 2   KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF EI   Y+Q      +A +KE+     +     +    G+
Sbjct: 62  AERHGFLPFKEISRSYFQPGVDAGKASIKEALREGQELIVQVEKDERGN 110


>gi|319902743|ref|YP_004162471.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108]
 gi|319417774|gb|ADV44885.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108]
          Length = 524

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 151/565 (26%), Positives = 265/565 (46%), Gaps = 62/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D ++ EL  E        GN+YL ++ ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKQLVELQSEGRSLYFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +                                       +SL
Sbjct: 60  VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ LS AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W++       +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  Y E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFESIHVNDEAVYHEIKDYVTLIAPERADIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              ++  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  +  Y+     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGIVSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLF 563
             +++ ++G  I ++   +LA   +
Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEY 505


>gi|238758383|ref|ZP_04619560.1| Ribonuclease E [Yersinia aldovae ATCC 35236]
 gi|238703287|gb|EEP95827.1| Ribonuclease E [Yersinia aldovae ATCC 35236]
          Length = 1125

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 199/658 (30%), Positives = 321/658 (48%), Gaps = 32/658 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHISALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-------------ALLPIPKSESLEDIQ 616
             + + +  + +    +A       E   + +               +P   + ++  + 
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPQEEAAIERKRPEQPALATFSLPTEVPPEAAPAVASVN 547

Query: 617 DNIVSEESTGVIRKRRR---------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
             +  + +T V   +           +      +T+     V  + +       +     
Sbjct: 548 ATVAPQPATTVNTDQPGFFSRLFSGLKGIFAAASTEAEVKPVEVEKTETSENRRNDRRNP 607

Query: 668 MEPSDITNHNLLENGAHGF--TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              ++            G   +     S    S       ++S D   + T   + R+
Sbjct: 608 RRQNNGRKDRGERTPREGRDNSTRDSSSRDNNSRDNSSRDSNSRDNNSRDTASREGRE 665



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|194099975|ref|YP_002003114.1| Rne [Neisseria gonorrhoeae NCCP11945]
 gi|268593833|ref|ZP_06128000.1| ribonuclease E [Neisseria gonorrhoeae 35/02]
 gi|268599971|ref|ZP_06134138.1| ribonuclease E [Neisseria gonorrhoeae MS11]
 gi|268604571|ref|ZP_06138738.1| ribonuclease E [Neisseria gonorrhoeae PID1]
 gi|193935265|gb|ACF31089.1| Rne [Neisseria gonorrhoeae NCCP11945]
 gi|268547222|gb|EEZ42640.1| ribonuclease E [Neisseria gonorrhoeae 35/02]
 gi|268584102|gb|EEZ48778.1| ribonuclease E [Neisseria gonorrhoeae MS11]
 gi|268588702|gb|EEZ53378.1| ribonuclease E [Neisseria gonorrhoeae PID1]
          Length = 919

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR V+E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624
               +        ++    +       E          +               +++   
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548

Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                     ++    R   R      +        S   V + 
Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRRNPRRSKREGSKIEVREA 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715
           +     + +         NG     E  D +    +  E++S N         + P   +
Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668

Query: 716 TRWWKRRK 723
            +  KRR+
Sbjct: 669 GQTGKRRR 676



 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF E+   Y+
Sbjct: 62 TDRHGFLPFKEVSRSYF 78


>gi|241204128|ref|YP_002975224.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858018|gb|ACS55685.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 953

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 332/619 (53%), Positives = 414/619 (66%), Gaps = 2/619 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149
           E+  A +               +    S+ E    +    + +++       +V+ +V  
Sbjct: 183 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGA 242

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL
Sbjct: 243 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 302

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM
Sbjct: 303 MPNTARGGGISRKITNPADRKRLKEIARLLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 362

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISE+IVSGE+GYREAKDFMK+LM
Sbjct: 363 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKMLM 422

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS
Sbjct: 423 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRS 482

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK 
Sbjct: 483 TREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 542

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR +EE
Sbjct: 543 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEE 602

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           YLL+ T HNI V T  D+ LYLLN KR TI++YE+RFGV+I +     +  + F I++G 
Sbjct: 603 YLLKNTTHNITVRTTPDIALYLLNHKRQTIIDYESRFGVAIIIDADGSVGAQHFAIDRGE 662

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV+  V         +     D +I     +E    + +  ++ +      +E      R
Sbjct: 663 PVENPVKIETLFNFAAIPEDDDDDIVIEVDEEEDEELEEKPAVSERPVAARAESEADGNR 722

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           KR+RRRRRR    +       +  +  ++   D      + +                  
Sbjct: 723 KRKRRRRRRGRNGNAEQPLSATGEAGDEDEDGDDEGGEGDENTEATPETRAESEESQRRK 782

Query: 690 YDVSIPPVSTPEMESSNSS 708
                            S 
Sbjct: 783 RRRRGKRGGRRNRAEDGSE 801



 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/121 (67%), Positives = 91/121 (75%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+         E V    T   V +      
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSKQDQP 120

Query: 121 E 121
           +
Sbjct: 121 D 121



 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 4/158 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +      L        +       D         EA+     +E  ++ Q  + + ES  
Sbjct: 795 RAEDGSELTAGEAGEDNGGDEDEGDDVSNDGAPSEAVAVEAIAEQADEGQAAMAAVESAP 854

Query: 627 --VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 +  R R RR          V++ +       +  +   +          +    
Sbjct: 855 VITEEVKPARARGRRKPAAAPVEEPVAETAPAVEAEPELVEASADLETSVQEE-AKPVRA 913

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               N   S P V +  +E+     D   KK  WW+RR
Sbjct: 914 NRESNISSSEPTVKSTRVENVEGD-DGKPKKAGWWQRR 950


>gi|332306495|ref|YP_004434346.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173824|gb|AEE23078.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1087

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 203/657 (30%), Positives = 320/657 (48%), Gaps = 32/657 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +      KF+ +  I++VIK  Q +++QI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIARTYFPQGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LK+    L +P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTD-LKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E A +  AP L+++E N+I RAIRD   +DI EI++     Y +A   ++L+ P 
Sbjct: 191 WTAISEAADSRPAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A  V+ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FANRVKLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA  TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++K++++ DR
Sbjct: 311 GSDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ +S   VC  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTESLALSVLRIMEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     I      +V  YLLN+KR  +   E R  V + ++    +    +++ +  P 
Sbjct: 431 IKDNTGQIEAQLPVNVATYLLNEKRGAVASVEKRHKVQLVIIPNPNMETPHYHVARRRPD 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNI------ECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            A+ +  + V       +           +     ++ +   K+   +         ES 
Sbjct: 491 DAIHDMSYNVELMKNEDTEADKAVTATPVKEQPALQSFVSPAKAAPAQTQGAKATEVESV 550

Query: 626 G-------------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
                                     + +R+ +   + ++        +     +D+   
Sbjct: 551 SLLTKIASWLKSLFAPAPQPEPEPEVKPQRKPQQRRNRNNPRRGKQGDNRSEGRNDNRSE 610

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +     +          D   P       + S +++    K+ +    RK
Sbjct: 611 SRGEKADSRDGNEKPNNRK-PRRNDNRKPRNDNKTAKDSTNNTPDQKKEQKPAAPRK 666



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 52/77 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI   Y+
Sbjct: 62 AERHGFLPLKEIARTYF 78


>gi|146311256|ref|YP_001176330.1| ribonuclease E [Enterobacter sp. 638]
 gi|145318132|gb|ABP60279.1| RNAse E [Enterobacter sp. 638]
          Length = 1048

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 194/597 (32%), Positives = 306/597 (51%), Gaps = 12/597 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLGFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S+ALSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   EAR  GV   +V   ++    + + +  
Sbjct: 431 ALKENTKEVHAIVPVPVASYLLNEKREAVSAIEARQAGVRCIIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   + E   +     P   +  + +       +E+T   
Sbjct: 491 KGEETSTLSYLLPKLHEEEMAMPSDEEPAERKLPEQPALATFIMPEAPPAPSEQEATVKP 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             ++     R  +++    G++  + S    +    +   E          +     
Sbjct: 551 AVQKSETEARVTSSE---PGLLGRIFSALKKMFAGEEAQPEEPKAAPKEEKQERPQQ 604



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|186475583|ref|YP_001857053.1| ribonuclease [Burkholderia phymatum STM815]
 gi|184192042|gb|ACC70007.1| ribonuclease, Rne/Rng family [Burkholderia phymatum STM815]
          Length = 1092

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 204/636 (32%), Positives = 317/636 (49%), Gaps = 11/636 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +K  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGTQGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR+ I + E+RF V++ +V    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +        PK E+  + I     +  +     
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEKPAPSAPVRTP 550

Query: 630 KRRRRRRRRRPATDHHD---AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                    +PAT        G+     +         +   +P         E      
Sbjct: 551 APAAATVEVKPATGGFIGWLKGLFGMQPAAPAPAPAPVEKAAKPVRGERTERGERTGERG 610

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +         +     +          +     +R
Sbjct: 611 GDRNRNRRSGGAGGRDAAGRGEGTATQGRQGQPSQR 646



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGN 110


>gi|117619748|ref|YP_856763.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561155|gb|ABK38103.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1039

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 209/681 (30%), Positives = 321/681 (47%), Gaps = 59/681 (8%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
             +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 10  QEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                 +       ++ +  I+EV++  Q ++VQI KEERG KGAA+TT++SLAG Y VL
Sbjct: 70  LKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE   GL VP GMG+I+RTAG  ++  E++ D   L+
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLL 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             WD++ + + +  AP L+++E N+I RAIRD   +D+ EI++     +  AK  ++L+ 
Sbjct: 189 NHWDSIHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ Y+    +F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++ +
Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLEMSRQR+R S+ ES++ +C  C+G G IR   S+ALSILR +EE
Sbjct: 369 DRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSILRLIEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     +      DV  YLLN+KRA+I   E R  V + ++    L    + + +  
Sbjct: 429 EAMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETPHYEVTRIR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------------------------- 601
             +      +++ ++   P Y      V + E                            
Sbjct: 489 QNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAPAAPAPVVAPAAPA 548

Query: 602 --------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
                                  P       +       + +  G   +R   R R +  
Sbjct: 549 APEAGLFGKLFKAISGLFGSDTAPADVKAPADKPAAQREARKDEGHRHQRDETRSRGQRG 608

Query: 642 TDHHDAGVVSDVSSIQNV-----IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
               + G  S   + +        +        P                 E      P 
Sbjct: 609 RRDDNRGNRSPADAAEKREAGANREGGESRNRRPRKEREPRQEREARGEVREQRMEREPR 668

Query: 697 VSTPEMESSNSSSDPIVKKTR 717
            +    +     +    ++ R
Sbjct: 669 EAREPRQEREPRAPRPAREPR 689



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIARNYF 78


>gi|238791867|ref|ZP_04635504.1| Ribonuclease E [Yersinia intermedia ATCC 29909]
 gi|238728971|gb|EEQ20488.1| Ribonuclease E [Yersinia intermedia ATCC 29909]
          Length = 1155

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 188/541 (34%), Positives = 290/541 (53%), Gaps = 9/541 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +       + +     P   + SL        +  +    
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPPEAAPANVNAK 550

Query: 629 R 629
            
Sbjct: 551 P 551



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|86357279|ref|YP_469171.1| ribonuclease E protein [Rhizobium etli CFN 42]
 gi|86281381|gb|ABC90444.1| ribonuclease E protein [Rhizobium etli CFN 42]
          Length = 961

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 338/627 (53%), Positives = 415/627 (66%), Gaps = 2/627 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149
           E+  A T               +    ++ E    +    + +++       +V+ +V  
Sbjct: 189 EAEGASTVDNDDDTPAGGTMAAMVETDTISEDIDTSKRRHDDDDDDDDHGEEEVIESVGA 248

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL
Sbjct: 249 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 308

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM
Sbjct: 309 MPNTARGGGISRKITNPQDRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 368

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE+GYREAKDFMK+LM
Sbjct: 369 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLM 428

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS
Sbjct: 429 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 488

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK 
Sbjct: 489 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 548

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G G++RSQSSVAL +LR +EE
Sbjct: 549 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVALHVLRGIEE 608

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           YLL+ T HNI V T  D+ LYLLN KR TIV+YEARFGV+I +     +  + F I++G 
Sbjct: 609 YLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYEARFGVAIIIDADGSVGAQHFAIDRGE 668

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV+  V         +     D +I     ++    + +  +  +      SE      R
Sbjct: 669 PVENPVKIESLFNFAAIPEDEDDDIVIEADEDEDEELEEKAAATERPAAARSEGEGEGNR 728

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           KR+RRRRRR    +        +        +D      E +        EN      + 
Sbjct: 729 KRKRRRRRRGRNGNAEQPIAAGETIDEDEDGEDEGSEGDENAAAAPETRAENEESQRRKR 788

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
                        E  +  +     + 
Sbjct: 789 RRRGKRGGRRNRAEDGSEITAEEAGED 815



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 7/173 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD-------DVTHGDVT 113
           YGGNRHGFL F EIHPDYYQIP +DRQALL+         E V         D++  D  
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP 120

Query: 114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
                S E   P+    + T EE   +        V +          +  K+
Sbjct: 121 DVGIVSAEAPEPVVAADEATTEEIAAAPEIVAPPEVAEEAPAKKAKPRRSRKK 173



 Score = 45.7 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 1/150 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                 +   S+ +      ++     +       ++   +     +          K  
Sbjct: 810 EEAGEDNGDTSEGEGEEITNDVAPSEAETVETIAEQAGEGQAAMAAVEGAAVVTEDVKPA 869

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           R R RR+PA    +  V    ++     +                  +        N   
Sbjct: 870 RGRGRRKPAAPPVEEPVTEAGAAPAVEAEPEVVEASADLATPAQEEAKPVRANRESNISS 929

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           S P V +   ++  S  +   KK  WW+RR
Sbjct: 930 SEPTVKSTRTDNGESD-EGKPKKAGWWQRR 958


>gi|153949428|ref|YP_001400546.1| ribonuclease E [Yersinia pseudotuberculosis IP 31758]
 gi|152960923|gb|ABS48384.1| ribonuclease E [Yersinia pseudotuberculosis IP 31758]
          Length = 1216

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|254477227|ref|ZP_05090613.1| ribonuclease E [Ruegeria sp. R11]
 gi|214031470|gb|EEB72305.1| ribonuclease E [Ruegeria sp. R11]
          Length = 1004

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 252/480 (52%), Positives = 328/480 (68%)

Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171
               +D  ++     A     +      S + ++ S  ++          K   R+Y IQ
Sbjct: 246 AADGSDDDVKADDEEAADGDVSRAADATSKDENIESVADEDDSEDIRPPRKPRPRRYKIQ 305

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
           EVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G  ISRKITN  DRK 
Sbjct: 306 EVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKK 365

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
           LKEIA  L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP  +YEE
Sbjct: 366 LKEIATELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEE 425

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
           G+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ V+ Y+D  P+F R  +
Sbjct: 426 GDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARYQV 485

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E  L  +    V L S GY++I  TEALV+IDVNSGR+T+E  IE+TAL+TNLEAAEE+A
Sbjct: 486 ETYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVA 545

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR
Sbjct: 546 RQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQR 605

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
           +R  ++E+TT  C +C G G IRS  S+ALSILR +EE   +  +  ++V     +  YL
Sbjct: 606 LRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVSIANYL 665

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
           +NQKR  I + EAR+G+S+ +     L    F +EK      +V               D
Sbjct: 666 MNQKREHIAQIEARYGLSVRIEGDAHLVSPDFTLEKFKTASRVVPVATAPVVSVDTSIMD 725



 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 77/144 (53%), Positives = 93/144 (64%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+  N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+AL++E         A  ++              
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEEETKPKRSSRSRRS 120

Query: 121 EEVAPIANFSQETEEESIISANND 144
              A     +   E + +    +D
Sbjct: 121 RTKAAEVKSADVVETKDVTPEGDD 144


>gi|312115769|ref|YP_004013365.1| ribonuclease, Rne/Rng family [Rhodomicrobium vannielii ATCC 17100]
 gi|311220898|gb|ADP72266.1| ribonuclease, Rne/Rng family [Rhodomicrobium vannielii ATCC 17100]
          Length = 1049

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 259/451 (57%), Positives = 336/451 (74%)

Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
             +    V     +          K+  R Y IQEVIK  QI+L+Q+VKEERG+KGAA+T
Sbjct: 297 ESATPAPVEVVGSEDALEELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALT 356

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
           TYLSLAGRY+VLMPNT+ G  ISRKIT P DRK LKEIA+ L+VP GMG+I+RTAGASRT
Sbjct: 357 TYLSLAGRYTVLMPNTASGGGISRKITVPADRKRLKEIAQELDVPEGMGLIIRTAGASRT 416

Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
           K EIKRDFEYL+RLW+NVR+L L S AP LVYEEG+LIKR+IRDLY KDI EI+V+G++ 
Sbjct: 417 KAEIKRDFEYLLRLWENVRDLTLKSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDEA 476

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           + EA++FM++LMPS+A+ V  Y++P PIF +  +E QL+ +    VTL S GY+++NQTE
Sbjct: 477 HHEAREFMRMLMPSHAKNVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTE 536

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           ALV+IDVNSGRSTRE+ IEDTAL+TN+EAAEE+ARQ+RLRDLAGLIV+DFIDM+E++NNR
Sbjct: 537 ALVAIDVNSGRSTREYSIEDTALKTNMEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNR 596

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           SVE+KLKESL+ DRAR+QVG IS+FGL+EMSRQR+R  V+E +T  C  C+G G+IRS  
Sbjct: 597 SVERKLKESLRHDRARIQVGHISHFGLMEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSIE 656

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
           SVAL ILRS+E++L    A NI +   ++  LY+LN KR+ + + E R+GV+I +    +
Sbjct: 657 SVALMILRSIEDHLRTQGAANITLTASTEAALYILNNKRSYLRDIELRYGVTIVLQPDDK 716

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
                F +E+G+     V    +V     A 
Sbjct: 717 AHGAHFVLERGAEAVPPVVGDSRVVHMETAS 747



 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 95/150 (63%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV R NRVEE D+ES  +KQ++GNIYLAKV R+EPSLQAAFV+
Sbjct: 1   MANKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVN 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP + R+ L+KE    +      A +      +       
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVAVREQLMKEEAADRQGRYRDAGESRPNRRSSDKAPEA 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVE 150
           E     +N S   E +  ++A      + +
Sbjct: 121 EGGTQTSNESGNGESQPDVAAAAGEAPSED 150


>gi|115351040|ref|YP_772879.1| ribonuclease [Burkholderia ambifaria AMMD]
 gi|115281028|gb|ABI86545.1| RNAse E [Burkholderia ambifaria AMMD]
          Length = 1068

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 196/539 (36%), Positives = 296/539 (54%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +        PK E+            S    R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPSAAPQR 549



 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|327190276|gb|EGE57376.1| putative ribonuclease protein [Rhizobium etli CNPAF512]
          Length = 958

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 322/536 (60%), Positives = 391/536 (72%), Gaps = 2/536 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149
           E+  A +               +    S+ E    +    + +++       +V+ +V  
Sbjct: 186 EAEGASSIDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGA 245

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL
Sbjct: 246 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 305

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM
Sbjct: 306 MPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 365

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LM
Sbjct: 366 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLM 425

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS
Sbjct: 426 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 485

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK 
Sbjct: 486 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 545

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G G++RSQSSVAL +LR +EE
Sbjct: 546 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCAGTGHVRSQSSVALHVLRGIEE 605

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           YLL+ T HNI V T  D+ LYLLN KR TIV+YE+RFGV+I +     +  + F I++G 
Sbjct: 606 YLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYESRFGVAIVIDADGSVGAQHFAIDRGE 665

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            V+  V         +     D +I     ++    + +  +  +      SE  +
Sbjct: 666 AVENPVKIETLFNFAAIPEDEDDDIIIEADEDEDEELEEKPAAAERAATARSEGES 721



 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 86/166 (51%), Positives = 104/166 (62%), Gaps = 4/166 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+       +     +DV H +     D S 
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLST 116

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
           ++   +     E  E   ++      +               + +R
Sbjct: 117 QDQPDVGIVPAEAPEPVAVADEPAPAAEAAPAAAEEAPAKKARPRR 162



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 41/158 (25%), Gaps = 2/158 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL--EDIQDNIVSEES 624
           +      L+       S S     D     V   EA +    +E    +      V   +
Sbjct: 798 RAEDGSELMAGEAGEDSGSDEDEGDDVSNDVAPAEAAIVETVAEQAGEDQAAAAAVEGAA 857

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 +  R R RR A        +++  +      +           T          
Sbjct: 858 VVTEDVKPARGRGRRKAAASPVEAPMAEAEAAPAAEVEPEVAEASADLQTPAQEEAKPVR 917

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              E+   S  P        +  S D   KK  WW+RR
Sbjct: 918 ANRESTITSSEPTVKSTRSENGESDDGKPKKAGWWQRR 955


>gi|301167908|emb|CBW27493.1| RNase G [Bacteriovorax marinus SJ]
          Length = 526

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 165/569 (28%), Positives = 281/569 (49%), Gaps = 52/569 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFES----EHKKQIKGNIYLAKVTRVEPSLQA 56
           M  +++I+ +   E R  ++ +  + +   E     E K    G+I+  +V RV P +Q+
Sbjct: 1   MGKQLIINQTL-NECRAALVLNGEILDFLMERTTEGEDKVPQVGDIFKGRVLRVLPGMQS 59

Query: 57  AFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
           AFVD G  +  FL   +       IP      L ++  +A+   + +      G+V    
Sbjct: 60  AFVDIGWEKAAFLYVDD-----AYIPT-----LQEQREMAEKTRKMIESQERVGEVIPDE 109

Query: 117 DHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176
             +L E                                       +       I+  +K 
Sbjct: 110 FSTLNESVN-----------------------------------MRFRPEHATIETFLKE 134

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
            Q +LVQ+ KE    KG  VT  ++LAGR+ V MP       +SR+I N  +R+ L+EI 
Sbjct: 135 GQEILVQVAKEPISTKGPRVTRQITLAGRHVVFMPFIEHTG-VSRRIENEGERERLREIL 193

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
             +    G GVI RT    ++   +K D+  L+++W +V++ A  S    + Y + + I+
Sbjct: 194 DTIRPE-GKGVIARTVAEGQSYRTLKSDYNMLVKIWKDVQKKAEKSKPSTVCYRDLSFIQ 252

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R +RD+  +D+SEII+  +   +E + F    +PS       Y+D  PIF + G++++++
Sbjct: 253 RLLRDITDEDVSEIIIDSKDNQKEVEKFTSKYLPSMKGKTVLYDDTTPIFEKFGVDMEIE 312

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
                +V L S G + I+QTEALVSIDVN+G+      +E+T L+TN+EA +EIA QLRL
Sbjct: 313 RGISNKVYLRSGGSLNIDQTEALVSIDVNTGKFVGRKNLEETILRTNMEAVKEIAYQLRL 372

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           R+  G+I++DFIDME++++  +V   L E+LKKDR++  V  IS  GL+EM+R+R R ++
Sbjct: 373 RNCGGIIIIDFIDMEKEEHRETVYNLLIEALKKDRSKTNVLPISGLGLVEMTRKRTRDTL 432

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
                + C YC+G G ++S  +V   ++R + + L + T   + ++ H +V   L     
Sbjct: 433 TRVLCEPCPYCEGTGRVKSTLTVCYELIRELLKVLNKSTGSKVYIYAHPEVTARLCGDDL 492

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYI 565
             I   E  +G S+ +        + + I
Sbjct: 493 DLIENLEEGYGKSLQIRSENNYHIEQYEI 521


>gi|170023918|ref|YP_001720423.1| ribonuclease E [Yersinia pseudotuberculosis YPIII]
 gi|169750452|gb|ACA67970.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis YPIII]
          Length = 1216

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|222085644|ref|YP_002544174.1| ribonuclease E protein [Agrobacterium radiobacter K84]
 gi|221723092|gb|ACM26248.1| ribonuclease E protein [Agrobacterium radiobacter K84]
          Length = 960

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 316/539 (58%), Positives = 391/539 (72%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
            A + E+ +     +          +   +  S +          + +++          
Sbjct: 172 DAPVAEAKVDAPGEDEEGPSGEMAAMVETDSISEDVDVSKRRHDDDDDDDHDHEEEVIES 231

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
              ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRY
Sbjct: 232 VGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRY 291

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
           SVLMPNT++G  ISRKITNP DRK LKEIA+ LEVP GMGVILRTAGA+RTK+E+KRDFE
Sbjct: 292 SVLMPNTARGGGISRKITNPQDRKRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFE 351

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISE+IVSGE+GYREAKDFMK
Sbjct: 352 YLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMK 411

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
           +LMPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNS
Sbjct: 412 MLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNS 471

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           GRSTREH IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE 
Sbjct: 472 GRSTREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKEC 531

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           LK DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR 
Sbjct: 532 LKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRG 591

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           +EEYLL+ T H+I V T  ++ LYLLN KR TIV+YE+RFGV+I +     +  + F I+
Sbjct: 592 IEEYLLKNTTHDITVRTTPEIALYLLNHKRQTIVDYESRFGVAIIIGADNAVGAQHFAID 651

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +G PV+  V         +     D +I     ++    + +  +  +      S E+ 
Sbjct: 652 RGEPVENPVKIETLFNFAAIPEDDDDDIVIEADEDEDEELEEKAASVEQAPVARSSETN 710



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 104/163 (63%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+         + V    T  D++  +   +
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDDDVEHVETALDLSQQDQPDI 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKK 163
             V      +   EE   + A          VK   P    KK
Sbjct: 121 GIVEKDEAPAAIAEEAPALEATAPAEEAEAPVKKAKPRRSRKK 163



 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 8/155 (5%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                          + ++     +  +     +   +     + +  +     K  + R
Sbjct: 803 EESGSDEGADGEDDGENDVAVTVAEIVIAEGEAAVESQPAMAAVETASTVTEDVKPAKSR 862

Query: 636 RRRRPATDHHD--------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            RR+P  +           A V    +     I  + D   EP         +       
Sbjct: 863 SRRKPKAEASPVEAPVVEAAPVADAEAETVTEIAVALDTPAEPVVAAEPEAAKPARANRE 922

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            N   S  PV      +  + SD   KK  WW+RR
Sbjct: 923 SNVSSSSEPVVKSTRTNEGTDSDGKPKKAGWWQRR 957


>gi|114320586|ref|YP_742269.1| ribonuclease E [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226980|gb|ABI56779.1| RNAse E [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1073

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 196/557 (35%), Positives = 297/557 (53%), Gaps = 6/557 (1%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I++ ++  Q ++VQ+ KEERG KGAA+TTY+SLAGRY VLMPN  +   +SR+I  
Sbjct: 87  GRPSIRDAVREGQEVVVQVDKEERGTKGAALTTYISLAGRYLVLMPNNPRAGGVSRRIEG 146

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + ++E  R L+VP GMG+I+RTAG  RT  E++ D +YL++LW  +++ A    AP
Sbjct: 147 SDRAE-IREALRQLDVPEGMGLIVRTAGVGRTVEELQWDLDYLLKLWSAIQKAAEARSAP 205

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y+E ++I RA+RD    DI EI++   + + +A +F++ +MP   + ++ Y+D  P+
Sbjct: 206 FLIYQESDVIIRALRDYLRSDIGEILIDDPQVFEKAVEFVEQVMPYNRQKLKYYDDRVPL 265

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q++S  Q +V LPS G ++I+ TEAL+SID+NS R+T+   IE+TAL TNLE
Sbjct: 266 FTRYQIESQIESAFQRDVRLPSGGAIVIDHTEALISIDINSARATKGSDIEETALHTNLE 325

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+EIARQLRLRDL GLIV+DFIDM   +N R VE +L+E++K DRARVQ+G IS FGLL
Sbjct: 326 AADEIARQLRLRDLGGLIVIDFIDMGPNRNQREVENRLREAVKADRARVQIGRISRFGLL 385

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQR+RSS+ ES  +VC  C G G +RS  S+ALSILR VEE  ++     ++     
Sbjct: 386 EMSRQRLRSSLGESHQEVCARCGGQGTVRSVESLALSILRIVEEEAMKEKTGTVLAQLPV 445

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV  +LLN+KR +I E E R  V++ ++    +    + +++               +  
Sbjct: 446 DVATFLLNEKRPSISEIEDRHRVAVVLIPNRTMETPHYDVQRLRSDDESTEDPSYRLASE 505

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           + P                                +        +    +R     +   
Sbjct: 506 EHPEPSPEWLEREAAPRSEEPVVQRVQPPSAPPPTAPVEESPKEEAPPPQRDAPEGSGAS 565

Query: 646 DAGVVSDVSSIQN-----VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
           D G+       Q        +   D   +   +       +G  G  +    +       
Sbjct: 566 DVGISGLTGLFQRLRGFFGREADNDSAGQEGPVGEKAPAASGRRGSDQKGATNGRRGGGS 625

Query: 701 EMESSNSSSDPIVKKTR 717
                  +      +  
Sbjct: 626 NGGKGGRTRQKARPEDG 642



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 55/78 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD E+  ++Q K NIY   +TRVEPSL+AAFV YG
Sbjct: 2  KRMLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLPF EI P YY+
Sbjct: 62 AERHGFLPFKEIAPSYYR 79


>gi|163751082|ref|ZP_02158313.1| ribonuclease E [Shewanella benthica KT99]
 gi|161329243|gb|EDQ00242.1| ribonuclease E [Shewanella benthica KT99]
          Length = 1052

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 209/647 (32%), Positives = 315/647 (48%), Gaps = 22/647 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  ++      
Sbjct: 7   QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 66

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EVIK  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 67  LKEIAREYFPKGYSFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 126

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     L++P GMG+I+RTAG  +   E+  D + L 
Sbjct: 127 MPNNPRAGGISRRIEGDERTE-LKAALSELDIPNGMGLIVRTAGVGKDSAELAWDLKVLA 185

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  ++E ++   AP L+++E N+I RAIRD   +D+ E+++   + + EAK  + L+ 
Sbjct: 186 HHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVR 245

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +A  ++ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 246 PDFADRIKHYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 305

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++++++  
Sbjct: 306 TKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHL 365

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 366 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 425

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V I V+    +    + + +  
Sbjct: 426 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEIYVIPDPNMFTPDYRVSRHR 485

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +    +K+     +  Y+    E V   E  L    +           +       
Sbjct: 486 KDDQISEASYKLLEQPVSNLYEPRKLERVTAPEPALKGFTAPVKPPELKAKAATAPKTTE 545

Query: 629 RKRRRRRR--------RRRPATDHHDAGVVSDVSSIQNVIDDSF-------DMYMEPSDI 673
                 +         +  P  +  +    S   +  N   D         +        
Sbjct: 546 EPGLIAKLFAAIGGLFKAEPKVEEPEKQSESSSQNRHNRRPDRKNDSRRNDNRRSRDDKE 605

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
            + +  E       +  D +    S    +     S    K TR  +
Sbjct: 606 QSGDKNERSRPSRNKRADSNEERSSRDRGDQGKRQSRHDSKPTRTRQ 652



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 54/75 (72%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG +
Sbjct: 1  MLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|145299038|ref|YP_001141879.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851810|gb|ABO90131.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1020

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 212/685 (30%), Positives = 322/685 (47%), Gaps = 63/685 (9%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
             +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 10  QEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                 +       ++ +  I+EV++  Q ++VQI KEERG KGAA+TT++SLAG Y VL
Sbjct: 70  LKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE   GL VP GMG+I+RTAG  ++  E++ D   L+
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLL 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             WD++ + + +  AP L+++E N+I RAIRD   +D+ EI++     +  A+  ++L+ 
Sbjct: 189 NHWDSIHKASQDRTAPVLIHQESNVIVRAIRDYLRRDVGEILIDDPVIFERARAHIELVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ Y+    +F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++ +
Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLEMSRQR+R S+ ES++ +C  C+G G IR   S+ALSILR +EE
Sbjct: 369 DRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSILRLIEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     +      DV  YLLN+KRA+I   E R  V + ++    L    + + +  
Sbjct: 429 EAMKDNTEQVHAQVPVDVAAYLLNEKRASIASLEQRNEVRLYIIPNQHLETPHYEVTRIR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------------------------- 601
             +      +++ ++   P Y      V + E                            
Sbjct: 489 QNEIPEAASYELKTEIAKPVYQPKQTQVIEREQPLLQGFVQAPQPAAPAAVAAPVAAPAP 548

Query: 602 ------------------------ALLPIPKSESLEDIQDNIVSEES-----TGVIRKRR 632
                                   A     K+ + +        ++          R R 
Sbjct: 549 VAAKAEAGLFGKLFKAISGLFGSDAAPADVKAPAEKPAVQREARKDEAHRHQRDDTRGRG 608

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +R RR       + A       +  N             +       E      +E    
Sbjct: 609 QRPRRDDNRNSRNTAEAGEKREAAANREGGESRNRRPRKEREPRQERETRTEVRSEQRVE 668

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTR 717
             P     E E          +  R
Sbjct: 669 REPREPRQEREPRAPRPAREPRAPR 693



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIARNYF 78



 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 6/149 (4%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                +E+                  +  +  +       +   +      S E  Q   
Sbjct: 662 RSEQRVEREPREPRQEREPRAPRPAREPRAPREPRAEAVVEAVEIVETAVVSAEPQQ--- 718

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             E+   V  +R RR+ R++   D   + V V    +   V+ D+ +   E +D    + 
Sbjct: 719 --EKEQKVAERRERRQLRKQIRADVPASDVAVVPTEAPVAVVADTVEQSDEQADGQRRSR 776

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNS 707
                          I   +  + +    
Sbjct: 777 RTPRTQRIEGQRRKRINEDARSQRDDEEP 805


>gi|320014731|gb|ADV98302.1| RNase E [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 1216

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|270157798|ref|ZP_06186455.1| ribonuclease E [Legionella longbeachae D-4968]
 gi|289163932|ref|YP_003454070.1| Ribonuclease E [Legionella longbeachae NSW150]
 gi|269989823|gb|EEZ96077.1| ribonuclease E [Legionella longbeachae D-4968]
 gi|288857105|emb|CBJ10920.1| Ribonuclease E [Legionella longbeachae NSW150]
          Length = 646

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 204/649 (31%), Positives = 324/649 (49%), Gaps = 24/649 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           + +L  +   +    A+  D    D+ I     +++   I   +    E S+ +   +  
Sbjct: 2   EKMLINAMQTEEVRVALVKDKYLFDLDIECPGEVKKKGNIYKATVTRREPSLDAIFVEYG 61

Query: 147 SN-------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
           +         E       +   +    +  I  +I+  Q LLVQ+ KEERG+KGAA+TT+
Sbjct: 62  AKRQGFLPLKEIAPEYLSKSPDEFGDEKPPITSLIREGQELLVQVDKEERGSKGAALTTF 121

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           ++LAG Y VLMPN  +   ISR+I      + L+E    L +P  MG+I+RTAG  +++ 
Sbjct: 122 ITLAGCYLVLMPNNPRSGGISRRIEGEERDE-LRETLNALVLPEDMGLIIRTAGVGKSQE 180

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E++ D + L   W ++++     +AP L+++EG++I R+IRD   K ISEII+  +  Y 
Sbjct: 181 ELQDDLDMLCNQWQSIKQAYNTELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYI 240

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           +AK +++ + P +   ++ Y    P+F    IE Q+++ +Q +V LPS G ++I++TEAL
Sbjct: 241 KAKQYIERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEAL 300

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           VSIDVNS ++T    IE TAL TN+EAA+EIARQLRLRDL GL+V+DFIDM   KN R V
Sbjct: 301 VSIDVNSAKATGGADIEATALNTNIEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREV 360

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           E +LKE+L+ DRAR+QVG IS FGLLEMSRQR+R S+ ES  +VC  C+G G +R+  S 
Sbjct: 361 ENRLKEALQADRARIQVGRISRFGLLEMSRQRLRLSLGESAQEVCPRCEGRGTVRNIQSH 420

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
            LSI R +EE  L+     I V    ++  +++N+KR  I + E R GVS+ ++    + 
Sbjct: 421 GLSITRLIEEEALKEKTAEIQVQLPPEMATFIMNEKRNYIRDIEKRHGVSVMIIANPYMH 480

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
              + I +        +         Q      + E          +      + ++ + 
Sbjct: 481 LPQYSITRLKEDNVGKSKKPSYSLIQQPELQVSSSETDISSHDEPAVKSFVEHQPVKSSQ 540

Query: 620 VS-------------EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
            S              EST    + +  R + R  T    +   S      N    S   
Sbjct: 541 TSFIKRLWTSLFGGHTESTVSATQSQSPRAQNRGHTHAKSSKSSSGDKKSTNRRRRSIGS 600

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               +  +  +          +    +  P +      SN   +P +K+
Sbjct: 601 QQRANTNSGSSSSGMHRKKSNQPQQSNKAPSAR---NESNKKREPAIKE 646



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   MLI+A   EE RV +++D  + +LD E   + + KGNIY A VTR EPSL A FV+
Sbjct: 1  MEK-MLINAMQTEEVRVALVKDKYLFDLDIECPGEVKKKGNIYKATVTRREPSLDAIFVE 59

Query: 61 YGGNRHGFLPFLEIHPDY 78
          YG  R GFLP  EI P+Y
Sbjct: 60 YGAKRQGFLPLKEIAPEY 77


>gi|116251507|ref|YP_767345.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256155|emb|CAK07236.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 957

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 332/619 (53%), Positives = 414/619 (66%), Gaps = 2/619 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149
           E+  A +               +    S+ E    +    + +++       +V+ +V  
Sbjct: 187 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGA 246

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL
Sbjct: 247 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 306

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM
Sbjct: 307 MPNTARGGGISRKITNPADRKRLKEIARLLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 366

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISE+IVSGE+GYREAKDFMK+LM
Sbjct: 367 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKMLM 426

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS
Sbjct: 427 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRS 486

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK 
Sbjct: 487 TREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 546

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR +EE
Sbjct: 547 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEE 606

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           YLL+ T HNI V T  D+ LYLLN KR TI++YE+RFGV+I +     +  + F I++G 
Sbjct: 607 YLLKNTTHNITVRTTPDIALYLLNHKRQTIIDYESRFGVAIIIDADGSVGAQHFAIDRGE 666

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV+  V         +     D +I     +E    + +  ++ +      +E      R
Sbjct: 667 PVENPVKIETLFNFAAIPEDDDDDIVIEVDEEEDEELEEKPAVSERPVAARAEGEADGNR 726

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           KR+RRRRRR    +       +  +  ++   D      + +                  
Sbjct: 727 KRKRRRRRRGRNGNAEQPLSATGEAGDEDEDGDDEGGEGDENTEATPETRAESEESQRRK 786

Query: 690 YDVSIPPVSTPEMESSNSS 708
                            S 
Sbjct: 787 RRRRGKRGGRRNRAEDGSE 805



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/279 (34%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+       +     +DV H +     D S 
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLSK 116

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           ++   +     E  E + ++     V      +        K   R+   + V    +  
Sbjct: 117 QDQPDVGIVPAEAPETAAVTEETAAVEAAASPEATEEAPAKKARPRRSRKKVVEPVAETT 176

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +           A +      G     M    + ++IS  +     R +  +      
Sbjct: 177 ATEDAVPTDVEAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHG 236

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
               +  +            ++R      R+ + ++   
Sbjct: 237 EEEVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQ 275



 Score = 46.9 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 4/158 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +      L        +       D+        EA+     +E  ++ Q  + + ES  
Sbjct: 799 RAEDGSELTAGEAGEDNGGDEDEGDEVSNDGAPSEAVAVEAIAEQADEGQAAMAAVESAP 858

Query: 627 --VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 +  R R RR          V++ + +     +  +   +          +    
Sbjct: 859 VITEEVKPARARGRRKPAAAPVEEPVAETTPVVEAEPELVEASADLETSVQEE-AKPVRA 917

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               N   S P V +  +E+     D   KK  WW+RR
Sbjct: 918 NRESNISSSEPTVKSTRVENGEGD-DGKPKKAGWWQRR 954


>gi|292899166|ref|YP_003538535.1| ribonuclease E [Erwinia amylovora ATCC 49946]
 gi|291199014|emb|CBJ46125.1| ribonuclease E [Erwinia amylovora ATCC 49946]
          Length = 1179

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 309/629 (49%), Gaps = 9/629 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSHYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +A     + E   + ++      +  +         E +     
Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPAPHEVAVVPAV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            +   +    PA+      V   VS ++ +         +P            +    E 
Sbjct: 551 TKAAVKTPA-PASPAQPGLVSRIVSGLKKLFAAPEKPAQQPPQPAVEEKSAEASAPRGER 609

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            +              N  +D   +  R 
Sbjct: 610 RNNRRQNNRRDRNGDRNERNDRNERNDRN 638



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|300022369|ref|YP_003754980.1| ribonuclease, Rne/Rng family [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524190|gb|ADJ22659.1| ribonuclease, Rne/Rng family [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 1025

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 383/630 (60%), Gaps = 17/630 (2%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           +  +  S +A+ D  A +      +           V       Q+   ++    +    
Sbjct: 213 EPPMAASEVARDDEAAPSVLANDEEQPEHEFSDQPSVEDDYAGHQDALNDNGSVEHEHHD 272

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
              +      P    ++  R Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY
Sbjct: 273 EGSQPEFREGPRSRQRRRPRSYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRY 332

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
           +VLMPNT++G  ISRKITNP DR+ LK IA+ LEVP GMG+I+RTAGA+RTK EIKRDFE
Sbjct: 333 TVLMPNTARGGGISRKITNPQDRRRLKSIAQELEVPEGMGLIIRTAGAARTKQEIKRDFE 392

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YL+RLW++VR+L L S AP LVYEEG+LIKR+IRDLY KD+ EI+V+G+ G++EA DFMK
Sbjct: 393 YLLRLWESVRDLTLQSTAPSLVYEEGDLIKRSIRDLYNKDVEEIVVAGDAGHQEAADFMK 452

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
           +LMPS+A+ V  Y +P P+F R G+E QL+++ Q +VTL S GY++INQTEALV+IDVNS
Sbjct: 453 MLMPSHAKNVVAYREPTPLFTRYGVERQLNAMFQPQVTLRSGGYIVINQTEALVAIDVNS 512

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           G+STRE  IE+TAL TNLEAA+EIARQL+LRDLAGLIV+DFIDMEEK+NNR+VE++LK++
Sbjct: 513 GKSTREFSIEETALATNLEAADEIARQLKLRDLAGLIVIDFIDMEEKRNNRAVERRLKDA 572

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           L+ DRAR+Q+G IS+FGL+EMSRQR+R+ VLE +T  C +C+G G IRS  S+AL++LR 
Sbjct: 573 LRFDRARIQLGRISHFGLMEMSRQRLRTGVLEGSTSQCAHCQGTGIIRSTESIALAVLRG 632

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           +E+ +       ++  T S V LY+LN KRA + + E R G S+ V+    +    F +E
Sbjct: 633 IEDAITAGANGPLVATTTSAVALYILNSKRAYVADMEVRHGYSVTVLGSDRVQGANFTVE 692

Query: 567 KGSPVQALVN-------------TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
           + +     +                            D   E    DE ++         
Sbjct: 693 RSAASALPIRRTERAAVNMDWGFDAEGDAPSYAPSDMDSANEAGDADEDVIDRETRNGSR 752

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP--- 670
           D ++N          R R  R R      ++       D    Q   DD+   + EP   
Sbjct: 753 DGEENGQRRSRRRRRRGRGGRDRGDDRGEEYSLEQREDDSERDQPATDDAHSDFDEPTAD 812

Query: 671 -SDITNHNLLENGAHGFTENYDVSIPPVST 699
              + +   +++GAH    N   S    + 
Sbjct: 813 IEGLGDQPSVDDGAHAEASNGQGSDEKPNK 842



 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 1   MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M+N KMLIDA+H EETRVVV R+ RVEE DFES  +K ++GNIYLAKVTRVEPSLQAAFV
Sbjct: 1   MSNTKMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFV 60

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           DYGGNRHGFL F E+HPDYYQIP +DRQALL E   A+ + EA AD              
Sbjct: 61  DYGGNRHGFLAFNEVHPDYYQIPVADRQALLDEEAAAEAELEAAADRRAEALARRNVRSH 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
            +      +   +  + S    + +V   V+  +    E
Sbjct: 121 SDSDTGPESPGDDFGDISPADTSLEVSHIVDVEEDEHIE 159


>gi|293603990|ref|ZP_06686403.1| ribonuclease E [Achromobacter piechaudii ATCC 43553]
 gi|292817594|gb|EFF76662.1| ribonuclease E [Achromobacter piechaudii ATCC 43553]
          Length = 1032

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 193/580 (33%), Positives = 291/580 (50%), Gaps = 47/580 (8%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR++     ++ L++    LE+P GM +I RTAG  R   E++ D  YL++L
Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQL 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A ++ AP L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM ++MP 
Sbjct: 190 WTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             + V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALVS+DVNS RSTR
Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARSTR 309

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL+TN EAA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L  DR
Sbjct: 310 GADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G IR   S AL +LR ++E  
Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  YLLN+KRA I + EAR  V++ ++    L     +IE+    
Sbjct: 430 MKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPHHHIERLRHD 489

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP------------------------ 607
              +          +AP+ +   +    +    P                          
Sbjct: 490 DPRLEELKTSFDLVEAPATNAPWQPRESEIKARPEALVKGITPSQPAPVSTPAAPVAAPA 549

Query: 608 ---------------------KSESLEDIQDNIVSEESTGVIRKRRRRRR-RRRPATDHH 645
                                 SE+ +                + + R     +      
Sbjct: 550 APAAAGGLGGLFKRLVGWLTGGSEAAKPAPTAQEDSAKRAASGRGKGRAGHDGQERRGER 609

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                +  +       +  +           N    G   
Sbjct: 610 HGSDRNRNNRRGESRGEGAEGSEGNRHHARGNRRNEGERQ 649



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110


>gi|71899933|ref|ZP_00682080.1| Ribonuclease E and G [Xylella fastidiosa Ann-1]
 gi|71730296|gb|EAO32380.1| Ribonuclease E and G [Xylella fastidiosa Ann-1]
          Length = 1132

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 211/612 (34%), Positives = 324/612 (52%), Gaps = 16/612 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  +  D+ I      ++ + I        E S+ +A  D  ++      
Sbjct: 10  QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L +P  MGVI+RTAG  R   E++ D ++L+ 
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  AP L+Y+E  LI RA+RD +  DI EI+V  E+ Y++A +FM+ +MP
Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHEFMRHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y+D  P+F R  IE Q++  ++  V LPS G ++++QTEAL +IDVNS R+T
Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM   K+ R +E +L+  LK D
Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+  IS FGLLEMSRQR+R S+ ES+  VC YC G G +RS  S++LSI+R VEE+
Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V T  ++  YLLN+KR  I E E R    I ++   +L    + + +   
Sbjct: 429 AMKENTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629
            +    TG      +       +       ++ L IP + +++ I        +      
Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSITPPQLAPTQENIPTI 544

Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           + +    R  P  +           +  +    Q   + S    ++ +   N    E   
Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERNR 604

Query: 684 HGFTENYDVSIP 695
                    + P
Sbjct: 605 RDGQIATSNTQP 616



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  TDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGN 110


>gi|94311376|ref|YP_584586.1| RNAse E [Cupriavidus metallidurans CH34]
 gi|93355228|gb|ABF09317.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Cupriavidus metallidurans
           CH34]
          Length = 1037

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 199/542 (36%), Positives = 293/542 (54%), Gaps = 5/542 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R   E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRAAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A ++ AP L+Y E +L+ RAIRD +  DI EI++  ++ Y +A+ FM ++MP  
Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+T+ 
Sbjct: 251 MSRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             +         ++A + +   +  +           +          +     V R  R
Sbjct: 491 PRLEESTASYRMAEAAAKELEADTSYSSRKKEETRPRQEAAVKGITPDAPAPVSVPRPER 550

Query: 633 RR 634
            R
Sbjct: 551 VR 552



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGN 110


>gi|292487947|ref|YP_003530824.1| ribonuclease, Rne/Rng family protein [Erwinia amylovora CFBP1430]
 gi|291553371|emb|CBA20416.1| ribonuclease, Rne/Rng family protein [Erwinia amylovora CFBP1430]
          Length = 1166

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 198/615 (32%), Positives = 305/615 (49%), Gaps = 9/615 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----DVKGGSPEDVPKKFK 165
           D+ I +    ++ A I        E S+ +A  D  +                       
Sbjct: 13  DLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEISREYFPSHYNAH 72

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMPN  +   ISR+I  
Sbjct: 73  GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 132

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ W+ +++ A +  AP
Sbjct: 133 DDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKHWEAIKKAADSRPAP 191

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHP 344
            L+++E N+I RA RD   +DI EI++   K    A+  +  L  P ++  ++ Y    P
Sbjct: 192 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP 251

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+TR   IE+TA  TNL
Sbjct: 252 LFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARATRGGDIEETAFNTNL 311

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++DRAR+Q+  IS FGL
Sbjct: 312 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 371

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           LEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE  L+     +     
Sbjct: 372 LEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEEALKENTKEVHAIVP 431

Query: 525 SDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
             V  YLLN+KR  +   E R  GV   +V    +    + + +    +      + +  
Sbjct: 432 VQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVRSGEETQTLSYHLPK 491

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
             +A     + E   + ++      +  +         E +      +   +    PA+ 
Sbjct: 492 LHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPAPHEVAVVPAVTKAAVKTPA-PASP 550

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
                V   VS ++ +         +P            +    E  +            
Sbjct: 551 AQPGLVSRIVSGLKKLFAAPEKPAQQPPQPAVEEKSAEASAPRGERRNNRRQNNRRDRNG 610

Query: 704 SSNSSSDPIVKKTRW 718
             N  +D   +  R 
Sbjct: 611 DRNERNDRNERNDRN 625



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 45/64 (70%)

Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
          RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  RHGFLP  EI 
Sbjct: 2  RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIS 61

Query: 76 PDYY 79
           +Y+
Sbjct: 62 REYF 65


>gi|190891327|ref|YP_001977869.1| ribonuclease [Rhizobium etli CIAT 652]
 gi|190696606|gb|ACE90691.1| probable ribonuclease protein [Rhizobium etli CIAT 652]
          Length = 960

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 322/535 (60%), Positives = 390/535 (72%), Gaps = 2/535 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149
           E+  A +               +    S+ E    +    + +++       +V+ +V  
Sbjct: 191 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDIDTSKRRHDDDDDDDDHGEEEVIESVGA 250

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL
Sbjct: 251 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 310

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM
Sbjct: 311 MPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 370

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LM
Sbjct: 371 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLM 430

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS
Sbjct: 431 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 490

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK 
Sbjct: 491 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 550

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G G++RSQSSVAL +LR +EE
Sbjct: 551 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCAGTGHVRSQSSVALHVLRGIEE 610

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           YLL+ T HNI V T  D+ LYLLN KR TIV+YE+RFGV+I +     +  + F I++G 
Sbjct: 611 YLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYESRFGVAIVIDADGSVGAQHFAIDRGE 670

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            V+  V         +     D +I     ++    + +  +  +      SE  
Sbjct: 671 AVENPVKIETLFNFAAIPEDEDDDIIIEADEDEDEELEEKPAAAERATTARSEGE 725



 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTHGDVTIPNDH 118
           YGGNRHGFL F EIHPDYYQIP +DRQALL  +     + +     +     D++  +  
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP 120

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
            +  V   A       +E   +A  D V  V      +P    +  + + 
Sbjct: 121 DVGIVPAEAPAPVAVADEPAPAAIADAVEAVPATAEEAPAKKARPRRSRK 170



 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 41/156 (26%), Gaps = 1/156 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +      L         + +      ++             ++   +     +       
Sbjct: 803 RAEDGSELTAGEDSGSDEDEGDDVSNDVAPAEAAIVETVAEQAGEDQAAAAAVEGAAVVT 862

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              K  R R RR+ A    +A V    ++    I+                  +      
Sbjct: 863 EDVKPARGRGRRKAAASPVEAPVAEAEAAPAAEIEPEVAEASADLQTPAQEQTKPVRANR 922

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             N   S P V +   E+  S  D   KK  WW+RR
Sbjct: 923 ESNITSSEPTVKSTRSENGESD-DGKPKKAGWWQRR 957


>gi|206577486|ref|YP_002239296.1| ribonuclease E [Klebsiella pneumoniae 342]
 gi|206566544|gb|ACI08320.1| ribonuclease E [Klebsiella pneumoniae 342]
          Length = 1075

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 200/606 (33%), Positives = 307/606 (50%), Gaps = 14/606 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KRA +   E+R G V + +V   E+    + + +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   + E   +     P   +  + D     + EE     
Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPAPMLEEPVAAP 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                       A      G++S   S    I  S     +P ++      E       E
Sbjct: 551 AVAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGTEEAKPVEVPVEKKAEEKPERQQE 605

Query: 689 NYDVSI 694
                 
Sbjct: 606 RRKPRS 611



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|15602856|ref|NP_245928.1| Rne [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721318|gb|AAK03075.1| Rne [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1004

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 202/630 (32%), Positives = 313/630 (49%), Gaps = 14/630 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPDDYVYQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+    LEVP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K Y +AK  +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FIHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE ++++++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +      ++  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 LKENTKQVHTLVPVEIASYLLNEKRRAIHSIEKRHDVDVIVVPNEGMETPHFGVFRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSY--------DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           + +    + +    Q                       +   +  +     I       E
Sbjct: 491 EEVHELSYNLVKLHQEKDEHFVPEESLVSRNIETAALTSENVLESAAVSMAIPAPAPVPE 550

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                +     R   +      D  VV + S       +      E  +           
Sbjct: 551 KKVENKPSLLTRILAKLKAIFADKPVVEEKSKGNRPKSNRNRRQQERRNQRRSRAENVER 610

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              T+  D  +  V  P  E +   +    
Sbjct: 611 DSNTKRQDEVVEEVIRPRSERNTKRNRKAN 640



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|290510794|ref|ZP_06550164.1| ribonuclease E [Klebsiella sp. 1_1_55]
 gi|289777510|gb|EFD85508.1| ribonuclease E [Klebsiella sp. 1_1_55]
          Length = 1076

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 200/606 (33%), Positives = 307/606 (50%), Gaps = 14/606 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KRA +   E+R G V + +V   E+    + + +  
Sbjct: 428 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   + E   +     P   +  + D     + EE     
Sbjct: 488 KGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPAPMLEEPVAAP 547

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                       A      G++S   S    I  S     +P ++      E       E
Sbjct: 548 AVAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGTEEAKPVEVPVEKKAEEKPERQQE 602

Query: 689 NYDVSI 694
                 
Sbjct: 603 RRKPRS 608



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|124265849|ref|YP_001019853.1| ribonuclease E [Methylibium petroleiphilum PM1]
 gi|124258624|gb|ABM93618.1| ribonuclease E [Methylibium petroleiphilum PM1]
          Length = 998

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 194/535 (36%), Positives = 285/535 (53%), Gaps = 5/535 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QSEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +            R   IQ+VI N   LLVQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQFFKEGVTVRDAKIQDVISNGTELLVQVEKEERGNKGAALTTFVSLAGRYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  Y+++
Sbjct: 130 PNNPRGGGVSRRIEGEDREE-LKENLDQLEYPKGMSLIARTAGIGRSAPELQWDLNYMLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A       L+Y+E +L+ RAIRD +  DI EI++  +  Y +A+ FM  +MP
Sbjct: 189 LWSAIDGAAKAGKGAFLIYQESSLVIRAIRDYFHADIGEILIDTDDIYEQAQQFMNHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
             A  V++Y+D  P+F R  IE Q+++     V LPS G ++I+ TEALVS+DVNS RST
Sbjct: 249 ESASRVKRYKDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSVDVNSARST 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA +TNLEAA+EIARQ+RLRDL GLIVVDFIDMEE KN R VE +L+++L+ D
Sbjct: 309 RGSDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVETRLRDALRTD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ  +IS FGLLE+SRQR+R ++ E +   C  C G G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     + V    +V  +LLN+KR  I + E R   ++ +V    L    + +E+   
Sbjct: 429 SMKENTAAVHVQVPVEVTSFLLNEKRTEITKIELRQRTTVLLVPNKHLETPNYKLERLRH 488

Query: 571 VQALVNTGHKVGSDSQAPSYD----KNIECVWQDEALLPIPKSESLEDIQDNIVS 621
               +       +  + P  +    +  +   + E ++     +    +      
Sbjct: 489 DDPRLENLQASYTMIEEPDDEVGITRREKAKAKQEPVIKGVLPDLPAPVAAPKPE 543



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 67/109 (61%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQSEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   +++   + R A +++     T+     +    G+
Sbjct: 62  EDRHGFLPFKEISKQFFKEGVTVRDAKIQDVISNGTELLVQVEKEERGN 110


>gi|288936151|ref|YP_003440210.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22]
 gi|288890860|gb|ADC59178.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22]
          Length = 1079

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 200/606 (33%), Positives = 307/606 (50%), Gaps = 14/606 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KRA +   E+R G V + +V   E+    + + +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   + E   +     P   +  + D     + EE     
Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPAPMLEEPVAAP 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                       A      G++S   S    I  S     +P ++      E       E
Sbjct: 551 AVAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGTEEAKPVEVPVEKKAEEKPERQQE 605

Query: 689 NYDVSI 694
                 
Sbjct: 606 RRKPRS 611



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|261378097|ref|ZP_05982670.1| ribonuclease E [Neisseria cinerea ATCC 14685]
 gi|269145548|gb|EEZ71966.1| ribonuclease E [Neisseria cinerea ATCC 14685]
          Length = 913

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 205/650 (31%), Positives = 313/650 (48%), Gaps = 29/650 (4%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MP 
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSE----- 622
               +        ++    +       E          +      +        +     
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKAARPEPAVKGVRHTQPAPMVAEKKQNSWW 548

Query: 623 ----------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
                           E+  V     +R    R  +            S   V + +   
Sbjct: 549 DSFKAWLKRIFGSSTTEAQPVAETSGKRTAANRNNSRRQTPRRSKREGSKVEVREVAGKA 608

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             +P+         N         + +    +  E++   + +   V  T
Sbjct: 609 DEQPARNAKAETHNNDGRRRNGRNNRAAERANEAEIQEHINQAPAPVADT 658



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|261822070|ref|YP_003260176.1| ribonuclease E [Pectobacterium wasabiae WPP163]
 gi|261606083|gb|ACX88569.1| ribonuclease, Rne/Rng family [Pectobacterium wasabiae WPP163]
          Length = 1121

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 201/665 (30%), Positives = 309/665 (46%), Gaps = 58/665 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD   +DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKILELAKEHISALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++S+++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQTPHYSVVRVR 490

Query: 570 PVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPI---------------------- 606
             +      + +           ++ + + + +   P                       
Sbjct: 491 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETTPPVAKATP 550

Query: 607 ---------------------------PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
                                        +    D  D   +EE      +R  RR  RR
Sbjct: 551 AVVKAAEETQPGLISRFFGALKSVFASEPAVKAADNVDEKKAEEEKSTEGQRSERRNSRR 610

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
              +  D G   +  +  N  +       +  +  +        +  T            
Sbjct: 611 QGNNRRDRGSRDNRDNRDNRDNRDNRDNRDNREQRDDQRRNKRQNDETVTETRVAENAEK 670

Query: 700 PEMES 704
              E 
Sbjct: 671 AGSEE 675



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|159044883|ref|YP_001533677.1| ribonuclease [Dinoroseobacter shibae DFL 12]
 gi|157912643|gb|ABV94076.1| ribonuclease [Dinoroseobacter shibae DFL 12]
          Length = 1026

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 270/621 (43%), Positives = 366/621 (58%), Gaps = 2/621 (0%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
            D   L+ E+  A  D +    +      +     +  EV+  A       +      ++
Sbjct: 272 EDGPILVAEAAGAGPDGDKETAEKPKRRRSRRRKKTDVEVSEEATDETAAADSDAADQDD 331

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            +    ++          ++ +R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLA
Sbjct: 332 GIEDVADEDVAEEIRRPRQRRERRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLA 391

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           GRY VLMPNT++G  ISRKITN VDRK LKEIA  +EVP G G+I+RTAGA RTK EIKR
Sbjct: 392 GRYCVLMPNTARGGGISRKITNAVDRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKR 451

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           D++YL RLW+ +R+L L S+AP  +YEEGNLIKR+IRDLY +DI E++V GE+GYR AKD
Sbjct: 452 DYDYLKRLWEQIRDLTLKSIAPAPIYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKD 511

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           FMK+LMPS+A+ V+ Y +  P+F R  +E  L  +    V L S GY++I  TEALV+ID
Sbjct: 512 FMKMLMPSHAKNVKLYNENLPLFARYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAID 571

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNSGR+T+E  IE+TAL+TNLEAAEE+ARQ+RLRDLAGLIV+DFIDMEE++NN +VEK+L
Sbjct: 572 VNSGRATKEGSIEETALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRL 631

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           K+ LK DRAR+QVG IS FGLLEMSRQR+R  +LE TT+ C +C G G IRS +S+ALSI
Sbjct: 632 KDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSI 691

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           +R++EE  ++     ++V    +V+ YL N+KR  I   E R+G+S+ +    EL+   F
Sbjct: 692 VRALEEEGMRRRVREVLVKAPVNVINYLFNEKREHIALIEGRYGLSVRLEASNELSGADF 751

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I+K       V               D+       DE              ++    + 
Sbjct: 752 TIDKFKTATRKVVELDAPVVSIDTSGVDEAEIVEEPDEEEADTETEAETAATEETSEEQA 811

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                R+RRR   RR   T++ ++       +      DS D      +  +        
Sbjct: 812 PRKRRRRRRR--SRRGGGTENGESNGDGSDEAQSAADADSSDQADISEEAESSQPAVEAE 869

Query: 684 HGFTENYDVSIPPVSTPEMES 704
                            + E 
Sbjct: 870 AEEAPKPKRRRRRRRKSDAEE 890



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 87/134 (64%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLIDA+H EETRVVV+   +VEE DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MAKKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ALL E     T      +       +       
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALLAEEMAFATADAEEDEVKPKKRRSRRRKKVE 120

Query: 121 EEVAPIANFSQETE 134
                 A  + ++ 
Sbjct: 121 TSDEDAAEVTADSN 134


>gi|22125643|ref|NP_669066.1| ribonuclease E [Yersinia pestis KIM 10]
 gi|108812200|ref|YP_647967.1| ribonuclease E [Yersinia pestis Nepal516]
 gi|145599138|ref|YP_001163214.1| ribonuclease E [Yersinia pestis Pestoides F]
 gi|167427020|ref|ZP_02318773.1| ribonuclease E [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229902525|ref|ZP_04517644.1| RNase E [Yersinia pestis Nepal516]
 gi|270490298|ref|ZP_06207372.1| ribonuclease E [Yersinia pestis KIM D27]
 gi|21958554|gb|AAM85317.1|AE013778_3 RNase E [Yersinia pestis KIM 10]
 gi|108775848|gb|ABG18367.1| RNAse E [Yersinia pestis Nepal516]
 gi|145210834|gb|ABP40241.1| RNAse E [Yersinia pestis Pestoides F]
 gi|167053999|gb|EDR63827.1| ribonuclease E [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229680571|gb|EEO76668.1| RNase E [Yersinia pestis Nepal516]
 gi|270338802|gb|EFA49579.1| ribonuclease E [Yersinia pestis KIM D27]
          Length = 1216

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|92117367|ref|YP_577096.1| ribonuclease [Nitrobacter hamburgensis X14]
 gi|91800261|gb|ABE62636.1| RNAse E [Nitrobacter hamburgensis X14]
          Length = 1039

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 288/568 (50%), Positives = 380/568 (66%), Gaps = 5/568 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
            A    EA  +   H      + +         +     E++     +  V S   D   
Sbjct: 275 DADHALEAHDEAHDHESGDHNDHNGQPHEVEFHDEEAHAEDDDDAEEDEQVESVGGDDAL 334

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
               +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+
Sbjct: 335 EEVPERAYRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 394

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKIT+  DR  LK++ + L+VP GMGVILRTAGASRTK EIKRDFEYL+R+W+ 
Sbjct: 395 RGGGISRKITSAQDRSRLKDVVQDLDVPEGMGVILRTAGASRTKPEIKRDFEYLIRMWET 454

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFMK+LMP+  R
Sbjct: 455 VRDMTLQSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEGGYQEARDFMKMLMPTNVR 514

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+QY D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGRSTREH 
Sbjct: 515 AVKQYRDCQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 574

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           I+DTAL+TNLEAAEE++RQLRLRDLAGLIV+DFIDM+EK++NR+VE+KL + L+ DRAR+
Sbjct: 575 IKDTALKTNLEAAEEVSRQLRLRDLAGLIVIDFIDMDEKRSNRAVERKLSDCLRHDRARI 634

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS+FGLLEMSRQRIR+S+LES+T+ C +C G+G++RS  SVAL +LRS+EE L++ 
Sbjct: 635 QVGRISHFGLLEMSRQRIRASMLESSTEPCQHCGGSGHVRSVPSVALQLLRSLEEVLMKG 694

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573
             H+++V T ++V LY+LNQKR  + + E  F V ++VV    +   + F I++G  V  
Sbjct: 695 ATHDLVVRTRTNVALYVLNQKRGHLRDLEHSFKVGLSVVSDPSITGQQSFIIDRGEQVHT 754

Query: 574 LVNTGHKVGSDSQ--APSYDKNIECVW--QDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           L      + +      P  ++  E       E  +    +ES  D Q    +E      R
Sbjct: 755 LEAAKALLAAQLAASPPQAEEAHEDEQPLDIEVEIETGDTESRPDEQAGGEAEGDGRKRR 814

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
           +RR RR R   A D   A       S+Q
Sbjct: 815 RRRPRRERSGEARDDQAAHGDEGSDSVQ 842



 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 1   MANK---MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAA 57
           M+NK   MLIDA+H EETRVVV+R NRVEE DFES  +KQ++GNIYLAKVTRVEPSLQAA
Sbjct: 1   MSNKPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAA 60

Query: 58  FVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND 117
           F++YGGNRHGFL F EIHPDYYQIP +DR+AL++    A  ++E  ++D +    +   +
Sbjct: 61  FIEYGGNRHGFLAFSEIHPDYYQIPVADREALIEADERAHREAEEESEDRSSRRRSRHRN 120

Query: 118 HSLEEVAPIANFSQ-ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176
               +       +  E   +    A+    S   D      +             +   +
Sbjct: 121 SRRRDHGERVQSAIVEDAAQQDAGADASPFSPAHDDHPHEDDADHDHPHEFDHPHDDDAD 180

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
                     ++ G+     + +  +   +    P+ S     ++     
Sbjct: 181 HDHPHEHAHNDDIGHSQPYGSDHHDIDADH----PHGSHDIAFAQNPDQD 226


>gi|325921640|ref|ZP_08183477.1| RNAse E [Xanthomonas gardneri ATCC 19865]
 gi|325547874|gb|EGD18891.1| RNAse E [Xanthomonas gardneri ATCC 19865]
          Length = 1243

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 210/598 (35%), Positives = 314/598 (52%), Gaps = 9/598 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 7   QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    DI EI+V   + Y +A++FM+ +MP
Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMQQVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQNALKYD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 485

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   ++G              +         +   P   S++  Q   V EE+   +  
Sbjct: 486 NELGEDSGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAA 544

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                            GVV  +  I   ++    +   P         +       E
Sbjct: 545 APAPAPVVALPLPAPVTGVVGWLKRIFGGVEP---VAPVPESTQRPRQSDPARGNRNE 599



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 62/107 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 61  RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107


>gi|71282108|ref|YP_269009.1| ribonuclease E [Colwellia psychrerythraea 34H]
 gi|71147848|gb|AAZ28321.1| ribonuclease E [Colwellia psychrerythraea 34H]
          Length = 1004

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 200/641 (31%), Positives = 320/641 (49%), Gaps = 14/641 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQKLYDLDIESPGHEQKKSNIYKAKITRIEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERG KGAA+TT++SLAG Y VL
Sbjct: 70  MKEIAREYFPKGYTFQGRPNIKEVLHEGQEVIVQIDKEERGQKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     L++P GMG+I+RTAG  +   E+K D   L+
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKASLSKLDLPKGMGLIVRTAGVGKDYEELKWDLSVLL 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + +   +  AP L+++E NLI RAIRD   +DI E+++   K +   K  ++++ 
Sbjct: 189 HHWQAISDAGKSRPAPFLIHQETNLILRAIRDYLRRDIGEVLIDRPKTFESVKKHIEVVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   ++ Y    P+F    IE Q+++  Q EV LPS G ++I+ TEA+ SID+NS R+
Sbjct: 249 PDFLNKIKLYTSDVPLFTHYQIETQIETAFQREVRLPSGGSIVIDPTEAMTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TA  TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE ++++S+ +
Sbjct: 309 TKGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDSVHQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLEMSRQR+R S+ E++  VC  C G G++R   S+ALSILR +EE
Sbjct: 369 DRARIQLGKISRFGLLEMSRQRLRPSIGETSQGVCPRCSGTGHVRGVESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++    ++       V  YLLN+KR +++  E    V + ++    +    + + +  
Sbjct: 429 EAIKENTLHVQAQVPVPVATYLLNEKRRSVMHVEKHHNVRVLIIPNPHMDTPQYEVLRVK 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDK----NIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
             + +V   +++          K    +     +DE L+    S +     D    +   
Sbjct: 489 NDETIVEASYELPVKKAELEEAKMPKFDKVAAKRDEPLIQGMTSPTRAPKADESPVKAEI 548

Query: 626 GVIRKRRRRRRR----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             + K+ +        +           V +VS+ Q           + +   N+     
Sbjct: 549 TTVSKQTKPSGFFGWLKSLFVAEEVVEEVKEVSTTQQPKKPQERRGNQQAKRRNNRGNNR 608

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +        + P     E   +  S D  V K +   R+
Sbjct: 609 NRNDRNGEDATNRPIQKENEARDTRPSRDEEVNKPKRQPRK 649



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 56/77 (72%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY AK+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQKLYDLDIESPGHEQKKSNIYKAKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 62 ADRHGFLPMKEIAREYF 78


>gi|309781164|ref|ZP_07675901.1| ribonuclease E [Ralstonia sp. 5_7_47FAA]
 gi|308919985|gb|EFP65645.1| ribonuclease E [Ralstonia sp. 5_7_47FAA]
          Length = 1006

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 193/469 (41%), Positives = 281/469 (59%), Gaps = 1/469 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I  
Sbjct: 85  RNARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    LEVP GM +I RTAG  R+  E++ D  YLM+LW  V   A+++ AP
Sbjct: 145 EDRQE-LRETMAQLEVPDGMSIIARTAGIGRSAEELQWDLNYLMQLWKAVDGAAVDNKAP 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP     V++Y D  P+
Sbjct: 204 LLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDNMNRVKKYRDDVPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q++S +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +TNLE
Sbjct: 264 FSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAIDVNSARATKGADIEETAARTNLE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRARVQ+G IS FGL+
Sbjct: 324 AADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRARVQMGKISRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  ++     I      
Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQVPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           +V  +LLN+KR  I   E RF V++ ++    L    + +E+       ++        +
Sbjct: 444 EVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDDPRLDEDKASYKMA 503

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
           +  + +   +  +        P+ E+             +    +R  R
Sbjct: 504 EEAAKELEADTAYSTRKEAAKPRQEAAVKGITPDQPAPVSVPRAERPAR 552



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKDGVDVRNARIQDALREGQELIVQVEKEERGN 110


>gi|323136614|ref|ZP_08071695.1| ribonuclease, Rne/Rng family [Methylocystis sp. ATCC 49242]
 gi|322397931|gb|EFY00452.1| ribonuclease, Rne/Rng family [Methylocystis sp. ATCC 49242]
          Length = 1016

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 297/639 (46%), Positives = 383/639 (59%), Gaps = 14/639 (2%)

Query: 83  FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
            ++ QA   E    + D    A +    +        + E    A+   + + +      
Sbjct: 241 TAETQAPDHELKAFRQDERDEARERAREESAEEGPEGVAETQARADHPADEDHDDEEHDE 300

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
            D V ++             + +RQY IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSL
Sbjct: 301 EDDVEHIGGDAMDEAPYRAARSRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSL 360

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRYSVLMPNT++G  ISRKIT+  DRK LKEI   LEVP GMGVILRTAGA+RTK E+K
Sbjct: 361 AGRYSVLMPNTARGGGISRKITDGADRKRLKEIVHDLEVPEGMGVILRTAGATRTKAEVK 420

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
           RDFEYL+RLW++VREL L S AP LVYEEG+LIKRAIRDLY +D+ E++VSG++ YREAK
Sbjct: 421 RDFEYLLRLWESVRELTLRSSAPTLVYEEGSLIKRAIRDLYGRDVEEVVVSGDEAYREAK 480

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
           DFM++LMPS+A+ V+Q+ +  PIF  SG+E QLD++    VTL S GY++INQTEALV+I
Sbjct: 481 DFMRMLMPSHAKNVKQHREAFPIFAESGVEAQLDAMFSNHVTLKSGGYLVINQTEALVAI 540

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSGRSTREH IEDTAL+TNLEAA+E+ARQLRLRDLAGLIVVDFIDMEE +NNR+VE++
Sbjct: 541 DVNSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEESRNNRAVERR 600

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           LK+ LK DRAR+QVG IS+FGLLEMSRQRIR+ V+E +T  C +C GAG++RS +SVAL 
Sbjct: 601 LKDGLKNDRARIQVGRISHFGLLEMSRQRIRAGVVEGSTVQCPHCLGAGHVRSTASVALH 660

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
           +LR +EE L++  AH++ + T + V LY+LNQKRA + E E+RFGV I V     L    
Sbjct: 661 VLRVLEEALIKSAAHDVTLRTRAVVALYILNQKRAHLHELESRFGVHITVAADDTLTGAT 720

Query: 563 F-YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
           +  +E+G                 + P+    +         L     E    ++     
Sbjct: 721 YHALERGELASGP-----------RLPAAPAPLRVDSLRAEPLEEEPVEEEALVETGEEG 769

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           E+       RR  R  R                  +           E   +      + 
Sbjct: 770 EDEIARAESRREERVARSRFNGEEGEEGAQRSRRRRRRRGRGGGQAGEQMPLGAEQPSDE 829

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
           G            P    PE         P     RW +
Sbjct: 830 GLAFMAAIEGAPAPREPRPERAGR--GRGPERGPGRWRR 866



 Score =  203 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 84/136 (61%), Positives = 93/136 (68%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASH EETRVVVLR NRV+E DFE+  KK ++GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDASHPEETRVVVLRGNRVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+E + A    E       HG          
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRQALLEEESRAHRQDEEEEHHRPHGRGRRSRRRQH 120

Query: 121 EEVAPIANFSQETEEE 136
           E     A+  +    E
Sbjct: 121 EGAEKRASADEALSSE 136


>gi|262366258|gb|ACY62815.1| ribonuclease E [Yersinia pestis D182038]
          Length = 1218

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESSGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 545

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 546 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 605

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 606 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 636



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESSGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|237731017|ref|ZP_04561498.1| ribonuclease E [Citrobacter sp. 30_2]
 gi|226906556|gb|EEH92474.1| ribonuclease E [Citrobacter sp. 30_2]
          Length = 1087

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 190/535 (35%), Positives = 293/535 (54%), Gaps = 9/535 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             +      + +     +A +     E V + +   P   + ++ D+      +E
Sbjct: 491 KGEETPTLSYLLPKLHEEAMALPTEEEYVERKQPEQPALATFAMPDVPPAPALQE 545



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|17545759|ref|NP_519161.1| ribonuclease E protein [Ralstonia solanacearum GMI1000]
 gi|17428053|emb|CAD14742.1| probable ribonuclease e (rnase e) protein [Ralstonia solanacearum
           GMI1000]
          Length = 1014

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 213/685 (31%), Positives = 316/685 (46%), Gaps = 65/685 (9%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V   A+ + AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP  
Sbjct: 191 KAVDGAAVENKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALV++DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 -------------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK----- 608
                                 +T +    ++  P  +  ++ +  ++            
Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPAPVSVPRSERP 550

Query: 609 -------------------------------SESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                                           +  E +    V          RR R  R
Sbjct: 551 ARAEATPAAPQAAAPVPAQGGFVSWLKSLFGGKPAEPVVAAPVETPKRAEDGNRRDRGNR 610

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY-----DV 692
           +         G   +    Q    D            N                    D 
Sbjct: 611 QDRGGRTGQRGERGERQGQQQAGRDGQRQGQGRDGGRNEAREGQAQREGQREGQRGGRDR 670

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTR 717
           +  P  T E E+  +      ++ R
Sbjct: 671 NRQPAETAERETVEARQPQQGQEAR 695



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGN 110


>gi|237746017|ref|ZP_04576497.1| ribonuclease E protein [Oxalobacter formigenes HOxBLS]
 gi|229377368|gb|EEO27459.1| ribonuclease E protein [Oxalobacter formigenes HOxBLS]
          Length = 988

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 202/587 (34%), Positives = 300/587 (51%), Gaps = 40/587 (6%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   I++ +   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR++  
Sbjct: 85  RSATIKDALSEGQEVMVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    L+VP GM +I RTAG  RT  E++ D  YL++LW+ +     ++   
Sbjct: 145 EERQE-LRETMDKLDVPPGMSIIARTAGIGRTVEELQWDLNYLLQLWNAIESAGSSAPGA 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L+ RAIRD +  DI EI++  ++ Y +A+ FM  +MP  A  V++Y D  P+
Sbjct: 204 FLIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQARQFMSYVMPDMANRVKRYRDGVPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q++S +   V+LPS G ++I+ TEALV+IDVNS RSTR   IE TA  TN E
Sbjct: 264 FSRFQIEHQIESAYSRVVSLPSGGSIVIDHTEALVAIDVNSARSTRGTDIETTAFTTNCE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQLRLRDL GLIV+DFIDME  KN R +E +LKE+L  DRARVQ+  I+ FGL+
Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMESPKNRREIETRLKEALHYDRARVQMDKITRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R S+ E +   C  C G G+IR   S AL +LR +EE  ++ ++  I V    
Sbjct: 384 ELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIEEESMKESSAVIHVQIPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH------ 579
           DV  +LLN+KR  I++ EAR  V I ++    L    + +E+       +          
Sbjct: 444 DVAAFLLNEKRGEIMKIEARHKVEIVLIPNKYLETPHYKLERIKHDDPRLEEPQLSYKLA 503

Query: 580 -------KVGSDSQAPSYDKNIECVWQDEALLPIP------------------------- 607
                        + P+       V      +P P                         
Sbjct: 504 EQSDIDMSFSKRQKEPARPSQEAVVKNIPEGMPAPVVDHSLAPAEAEKGFFDRLLGFFGI 563

Query: 608 -KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
            K+E++++        ++    +   R R R R      D       +      +++   
Sbjct: 564 GKTEAVQEEPVEKQPAKNVRKGKNGERSRNRGRRGEPREDRSKSVQPAVSSAEQEETVAA 623

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             + +        +            S       E   +  ++ P V
Sbjct: 624 SPKNTRQRRTRGEKGERQREDRRPAKSEEDSIKQEAPVTTVAARPEV 670



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D ES  ++  K NIY A +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIESNARELHKSNIYKAVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+    ++     R A +K++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSLFRDGVDVRSATIKDALSEGQEVMVQVEKEERGN 110


>gi|294504207|ref|YP_003568269.1| ribonuclease E [Yersinia pestis Z176003]
 gi|262362324|gb|ACY59045.1| ribonuclease E [Yersinia pestis D106004]
 gi|294354666|gb|ADE65007.1| ribonuclease E [Yersinia pestis Z176003]
          Length = 1218

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 545

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 546 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 605

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 606 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 636



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|197335030|ref|YP_002156570.1| ribonuclease E [Vibrio fischeri MJ11]
 gi|197316520|gb|ACH65967.1| ribonuclease E [Vibrio fischeri MJ11]
          Length = 995

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 192/565 (33%), Positives = 305/565 (53%), Gaps = 13/565 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  ++        
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ V+  + ++ AP L+++E N+I RAIRD   +DI EI++   K +  A+  ++L+ P 
Sbjct: 191 WEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ YE   P+F    IE Q++S  + EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKLYEGEVPLFSHYQIESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V + +V   ++    F + +    
Sbjct: 431 LKDNTTQVLAVVPVSIASYLLNEKRRSVQHIEKFHDVRVIIVPNSDMETPHFEVIRIRDG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +         +   E   ++  ++ I   +  E +     +      + K 
Sbjct: 491 EEQEMLSYLL-----PKKLEALREAESKEAPVVNIAPKKREEPVLQGFSAPTQAAPVAK- 544

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSI 656
             +  ++  A      G++S     
Sbjct: 545 -AQPEKKAEAKTEEKPGIISRFFKA 568



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
            +RHGFLP  EI  +Y      YQ   + +  L +   +     +    + 
Sbjct: 62  ADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNK 112


>gi|320538810|ref|ZP_08038487.1| putative fused ribonucleaseE: endoribonuclease/RNA-binding
           protein/RNA degradosome binding protein [Serratia
           symbiotica str. Tucson]
 gi|320031155|gb|EFW13157.1| putative fused ribonucleaseE: endoribonuclease/RNA-binding
           protein/RNA degradosome binding protein [Serratia
           symbiotica str. Tucson]
          Length = 1028

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 195/636 (30%), Positives = 310/636 (48%), Gaps = 18/636 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
             +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 10  QREELRVALVDGQRLYDLDIESPGYEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                            +  I++ ++  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPSNYSSHGRPNIKDALREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + +
Sbjct: 130 MPNNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRL 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LL 328
           + W+ +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L 
Sbjct: 189 KHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALG 248

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R
Sbjct: 249 RPDFSSKIKLYSGEIPMFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           +TR   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+++++
Sbjct: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVR 368

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
           +DRAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S+ALSILR +E
Sbjct: 369 QDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIE 428

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA-RFGVSINVVIGIELADKLFYIEK 567
           E  L+     +       V  YLLN+KR ++   E  + GV   +V   ++    + + +
Sbjct: 429 EEALKENTKEVHAIVPVQVASYLLNEKRDSVSAIEKCQAGVKAIIVPNDQMQTPHYSVLR 488

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +      + +    +        +   + +       +       + + +EE    
Sbjct: 489 VRKGEETPTLSYLLPKLHEEEMMQLLEDASAERKRPEQPALATFSLAADNPLPTEEPVIT 548

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM-YMEPSDITNHNLLENGAHGF 686
                    +   A      G+++ +      +  S +      + +      EN     
Sbjct: 549 ---------KSAAAIAVAKPGLLNRLFGGLKALLASEEHPAAIETKLAEAPQAENNVENR 599

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                           E  +   +P  +++    RR
Sbjct: 600 RPQRRSRQGSGRKERAEGRDKRENPEPRESGEEPRR 635



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQREELRVALVDGQRLYDLDIESPGYEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|53804451|ref|YP_113938.1| ribonuclease E [Methylococcus capsulatus str. Bath]
 gi|53758212|gb|AAU92503.1| ribonuclease E [Methylococcus capsulatus str. Bath]
          Length = 885

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 202/556 (36%), Positives = 289/556 (51%), Gaps = 2/556 (0%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           +  I++V+K  Q ++VQ+ KEERG KGAA+TTY+SLAG Y VLMPN  K   ISR+I   
Sbjct: 88  RREIKDVLKEGQEVVVQVEKEERGTKGAALTTYISLAGSYLVLMPNNPKAGGISRRIEGD 147

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           V     KE    L VP  MGVI+RTAG  +T  E++ D  YL++LW+ +        AP 
Sbjct: 148 VRSDM-KETLSQLHVPEDMGVIIRTAGGGKTVEELQWDLNYLLQLWEAIERSTREKPAPF 206

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+++E N+I RA+RD    DI EI+V     +R    F++ +MP +    R Y+D  P+F
Sbjct: 207 LIFQESNVIIRALRDHLRGDIDEILVDNPSTFRLVHSFLQQVMPQFINKARLYQDNVPLF 266

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
            R  IE Q+++ +  EV LPS G ++I+ TEAL +ID+NS R+T+   IE+TAL TNLEA
Sbjct: 267 SRYQIESQIETAYAREVPLPSGGAIVIDHTEALTTIDINSARATKGGDIEETALNTNLEA 326

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+EIARQLRLRDL GL V+DFIDM   +N R+VE +L+E+++ DRAR+Q+G IS FGL+E
Sbjct: 327 ADEIARQLRLRDLGGLFVIDFIDMMAARNQRAVENRLREAVRLDRARIQLGRISRFGLME 386

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           MSRQR+R S+ E+    C  CKG G IRS  S+ALSILR +EE  ++     II     +
Sbjct: 387 MSRQRLRPSLTETALLTCPRCKGQGTIRSVESLALSILRVLEEETMKKNTDRIIAQLPVE 446

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA-LVNTGHKVGSDS 585
              YLLN+KRA I + E R  V+I ++    L    + I++     A       K     
Sbjct: 447 SATYLLNEKRAAIQQIEVRHNVAITIIPNPHLETPNYDIQRIRSGGAGGEEEIRKSSYQL 506

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
            A    +  +      A    P               +     +  +      +   +  
Sbjct: 507 IAEKSPETPKPTRTPSAAAEAPAVREFIPTAPQPGGGDQRAQAQPGQPGGGLIKRFLNIL 566

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
               + D    Q     S  + +    +         A       D S    S    +  
Sbjct: 567 TGQRIEDQPPSQEASQPSAGLPLPVPFVQTGKTAGAQAETGAPPTDDSDHSGSQRRRDHR 626

Query: 706 NSSSDPIVKKTRWWKR 721
           + S     ++    +R
Sbjct: 627 DGSRRGGNRRKHPAQR 642



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ + D E   ++Q K NIY   +TRVEPSL+AAFV++G
Sbjct: 2  KRMLINATQPEELRVALVDGQKLYDFDIEIPAREQKKANIYKGLITRVEPSLEAAFVNFG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            RHGFLPF EI P Y
Sbjct: 62 AERHGFLPFKEILPKY 77


>gi|51596801|ref|YP_070992.1| ribonuclease E [Yersinia pseudotuberculosis IP 32953]
 gi|51590083|emb|CAH21717.1| ribonuclease E [Yersinia pseudotuberculosis IP 32953]
          Length = 1230

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|163856052|ref|YP_001630350.1| ribonuclease E [Bordetella petrii DSM 12804]
 gi|163259780|emb|CAP42081.1| ribonuclease E [Bordetella petrii]
          Length = 995

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 202/570 (35%), Positives = 297/570 (52%), Gaps = 33/570 (5%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR++  
Sbjct: 85  RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L++    LEVP GM +I RTAG  R   E++ D  YLM+LW  +   A ++ AP
Sbjct: 145 EDRQE-LRDTMEQLEVPQGMSIIARTAGIGRNVEELQWDLSYLMQLWTAIDSAARDNAAP 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM ++MP   + V++Y D  P+
Sbjct: 204 ILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++ +   V LPS G V+I+ TEALV++DVNS RSTR   IE+TAL+TNLE
Sbjct: 264 FSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTRGSDIEETALRTNLE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L  DRARVQ+G IS FGL+
Sbjct: 324 AADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQRLRDALHFDRARVQMGKISRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R ++ E +   C  C G G IR   S AL +LR ++E  ++     +      
Sbjct: 384 ELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEAMKENTAAVHAQVPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV  +LLN+KRA I + EAR  V++ ++    L     +IE+       +         +
Sbjct: 444 DVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPHHHIERLRHDDPRLEEVKTSFELA 503

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQ----------------------------- 616
           +APS D       Q+    P    + +   Q                             
Sbjct: 504 EAPSTDMAWAPRDQEVKARPEALVKGITPSQPAPVSTAPAAAPAASGGFGGLFKRLVGWL 563

Query: 617 ---DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                  +  +     KR   R +R                      +   +        
Sbjct: 564 SGSAEPAAPAAAKEEPKRGGSRAKRGHDGQERRGERHGSDRGRNRRGEPRSETAEADGAA 623

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEME 703
            +H           E    +    + PE  
Sbjct: 624 RHHVRGNRRHEERAERPPRAERDTARPERA 653



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110


>gi|162421481|ref|YP_001607837.1| ribonuclease E [Yersinia pestis Angola]
 gi|162354296|gb|ABX88244.1| ribonuclease E [Yersinia pestis Angola]
          Length = 1216

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 203/641 (31%), Positives = 327/641 (51%), Gaps = 20/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE-------- 680
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E        
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608

Query: 681 -NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
               +   +  +   P          N++ D   +      
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRYNTNRDNTSRDNANRD 649



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|149926439|ref|ZP_01914700.1| ribonuclease E [Limnobacter sp. MED105]
 gi|149824802|gb|EDM84016.1| ribonuclease E [Limnobacter sp. MED105]
          Length = 972

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 202/538 (37%), Positives = 298/538 (55%), Gaps = 7/538 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +  + I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKSNIYKGIITRVEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             +  IQ+V+K  Q L VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISRQYFKEGVEAGKARIQDVVKEGQELFVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEERQE-LREALDKLEYPKGMSIIARTAGIGRSVEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +     ++    L+Y+E +L+ RAIRD +  DI E+++  ++ Y +AK FM+ +MP  
Sbjct: 191 TAIDGAGKSANGAFLIYQESSLVIRAIRDYFSPDIGEVLIDTDEIYDQAKQFMQHVMPDM 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             +V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALVSIDVNS RSTR 
Sbjct: 251 MNLVKRYRDDIPLFSRFQIEHQIETAYSRMVPLPSGGAIVIDHTEALVSIDVNSARSTRG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IEDTAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME+  N + VE ++K+SL  DRA
Sbjct: 311 TDIEDTALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEKASNQKEVENRVKDSLHFDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQRIR ++ E +   C  C G G IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRIRPALNEGSHTTCPRCNGTGVIRDTESTALHVLRILQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +    ++ V    DV  +LLN+KR+ I + EAR  V++ ++    L    + I +     
Sbjct: 431 KEGTASVHVQVPVDVATFLLNEKRSEIYKLEARLKVNVLLIPNKNLETPHYEITRLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +    +  S   A S D+      + E      +   ++ +     +        K
Sbjct: 491 ERLEDPRQ--SFELATSKDEQSYYDKKTEGEAVKRQEAVIKGVIPTQPAPPHQERKPK 546



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ ++D E+  ++Q K NIY   +TRVEPSL+A FV+YG
Sbjct: 2   KRMLFNATHSEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGIITRVEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y++      +A +++      +     +    G+
Sbjct: 62  EDRHGFLPFKEISRQYFKEGVEAGKARIQDVVKEGQELFVQVEKEERGN 110


>gi|289665911|ref|ZP_06487492.1| ribonuclease E [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 969

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 210/653 (32%), Positives = 315/653 (48%), Gaps = 49/653 (7%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 7   QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMTSSKHQREVENKLQNALKYD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 485

Query: 571 VQALV------------------------------NTGHKVGSDSQAPSYDKNIECVWQD 600
            +                                      +     AP  ++    V   
Sbjct: 486 NELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPAPVREEAPAPVAPV 545

Query: 601 EALLPIPKSESLEDIQ--------------DNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
            A  P+        +                   + EST   R+    R  R    +   
Sbjct: 546 AAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRNERGERGG 605

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                  +      + +     +                  +      PP + 
Sbjct: 606 QRRDGRDARNGGNGNGANKERRDERRQPASGQGAQNGAQAQQQVQAPKPPRNE 658



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 62/107 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 61  RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107


>gi|28199849|ref|NP_780163.1| ribonuclease E [Xylella fastidiosa Temecula1]
 gi|182682600|ref|YP_001830760.1| ribonuclease [Xylella fastidiosa M23]
 gi|28057970|gb|AAO29812.1| ribonuclease E [Xylella fastidiosa Temecula1]
 gi|182632710|gb|ACB93486.1| ribonuclease, Rne/Rng family [Xylella fastidiosa M23]
 gi|307578883|gb|ADN62852.1| ribonuclease E [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 1132

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 211/612 (34%), Positives = 324/612 (52%), Gaps = 16/612 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  +  D+ I      ++ + I        E S+ +A  D  ++      
Sbjct: 10  QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L +P  MGVI+RTAG  R   E++ D ++L+ 
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  AP L+Y+E  LI RA+RD +  DI EI+V  E+ Y++A  FM+ +MP
Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHQFMRHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y+D  P+F R  IE Q++  ++  V LPS G ++++QTEAL +IDVNS R+T
Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM   K+ R +E +L+  LK D
Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+  IS FGLLEMSRQR+R S+ ES+  VC YC G G +RS  S++LSI+R VEE+
Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++ +   ++V T  ++  YLLN+KR  I E E R    I ++   +L    + + +   
Sbjct: 429 AMKESTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629
            +    TG      +       +       ++ L IP + +++ I        +      
Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSITPPQLAPTQENIPTI 544

Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           + +    R  P  +           +  +    Q   + S    ++ +   N    E   
Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERNR 604

Query: 684 HGFTENYDVSIP 695
                    + P
Sbjct: 605 RDGQIATSNTQP 616



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  TDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGN 110


>gi|329297206|ref|ZP_08254542.1| ribonuclease E [Plautia stali symbiont]
          Length = 1075

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 198/645 (30%), Positives = 307/645 (47%), Gaps = 19/645 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSALELPDGMGLIVRTAGVGKSAESLQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  +P L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAADSRPSPLLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKDNTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMETPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +        +     E   +     P   +  + D     V        
Sbjct: 488 KGEETQTLSYHLPKLHEAEMALPSEEEHAERRRPEQPALAAFVMPDAPPAPVEVSEESQP 547

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDV----------SSIQNVIDDSFDMYMEPSDITNHNL 678
                + +    A      G V+ +           +      +                
Sbjct: 548 AAVDVKAKPAVAAPATVSTGFVARLLGGLKKLFAGDAPAAAPAEEKTEAKTADGENTQQR 607

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            E   +    N      P +    +S         ++ R    R+
Sbjct: 608 GECRNNRRNNNNRRERTPRNGEHAQSREGREPREAREPRDQDNRR 652



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|190575133|ref|YP_001972978.1| putative ribonuclease E [Stenotrophomonas maltophilia K279a]
 gi|190013055|emb|CAQ46687.1| putative ribonuclease E [Stenotrophomonas maltophilia K279a]
          Length = 1097

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 199/501 (39%), Positives = 288/501 (57%), Gaps = 5/501 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  +  D+ I      ++ + I        E S+ +A  +          
Sbjct: 10  QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGGRHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E++K  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LK+    L +P  MGVI+RTAG  R   E++ D +YL+ 
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLNIPDDMGVIIRTAGVGRDAEELQWDLDYLLN 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W  + E AL+  AP L+Y+E  LI RA+RD    DI EI+V  E+ Y  A++FM+ +MP
Sbjct: 189 VWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAREFMQQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y+D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L  +LK D
Sbjct: 309 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLANALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPHYTVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYD 591
            +    +              
Sbjct: 489 NELGEESSKPSYQRGTPRKLP 509



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++ R+EPSL+AAFV+YG
Sbjct: 2   KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           G RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  GGRHGFLPLKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGN 110


>gi|121998032|ref|YP_001002819.1| ribonuclease [Halorhodospira halophila SL1]
 gi|121589437|gb|ABM62017.1| RNAse E [Halorhodospira halophila SL1]
          Length = 928

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 213/600 (35%), Positives = 319/600 (53%), Gaps = 4/600 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I      ++ A I        E S+ +A     +        K
Sbjct: 12  EELRVALVDGQILYDLDIEAPSREQKKANIYKGIITRVEPSLEAAFVQYGAERHGFLPFK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             +P        ++   ++ ++  Q +LVQ+ KEERGNKGAA+TTY+SLAGRY VLMPN 
Sbjct: 72  EIAPAYFTSADGQRNSPKDGLRENQEVLVQVDKEERGNKGAALTTYISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   +SR+I      + ++E  R L+VP GMG+I+RTAG  R+  E++ D +YL++LWD
Sbjct: 132 PRAGGVSRRIEGSDRAE-IRESLRQLDVPEGMGLIVRTAGVGRSTEELQWDLDYLLKLWD 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++       AP LVY+E ++I RA+RD    DI EI+V  ++ + +A+DF+  +MP   
Sbjct: 191 AIQNATAERAAPFLVYQESDVIIRALRDYLRSDIGEILVDDDEVFSKARDFIDQVMPYNR 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
           + ++ Y DP P+F R  IE Q++S  Q +V LPS G + I+ TEAL+SID+NS R+T+  
Sbjct: 251 QKLKHYTDPVPLFSRYQIESQIESAFQRDVRLPSGGAIAIDHTEALISIDINSSRATKGA 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++K DRAR
Sbjct: 311 DIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPPRHQREVESRLREAVKADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+RSS+ E+  +VC  C G G +RS  S+ALSILR +EE  ++
Sbjct: 371 VQIGRISRFGLLEMSRQRLRSSLGEAHQEVCGRCGGQGTVRSVESLALSILRIIEEEAMK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                ++     +V  +LLN+KRA I E E R+GV I ++    L    + I++    + 
Sbjct: 431 EKTGRVLAQLPIEVATFLLNEKRAQIAELEHRYGVHILLIPNRNLETPHYDIQRMRTDEG 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
              +G      + A         +       P  +  +         S          + 
Sbjct: 491 PEQSGSSYNLATPAAEPTVIEAGLPASRPPAPAVQGVTPSAPAPGPASGTEERKRPTGQG 550

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
              +   A        +  +    +   +       P D  +   +E       E    +
Sbjct: 551 AEGQGEDAPLSSIFRRLRGLLFQNSTDQERLTEGDSPRDKASPRRVEAEPEASEERGGRN 610



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++    + +LD E+  ++Q K NIY   +TRVEPSL+AAFV YG
Sbjct: 2  KRMLINATQPEELRVALVDGQILYDLDIEAPSREQKKANIYKGIITRVEPSLEAAFVQYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLPF EI P Y+
Sbjct: 62 AERHGFLPFKEIAPAYF 78


>gi|241662582|ref|YP_002980942.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D]
 gi|240864609|gb|ACS62270.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D]
          Length = 1008

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 193/469 (41%), Positives = 281/469 (59%), Gaps = 1/469 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I  
Sbjct: 85  RNARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    LEVP GM +I RTAG  R+  E++ D  YLM+LW  V   A+++ AP
Sbjct: 145 EDRQE-LRETMAQLEVPDGMSIIARTAGIGRSAEELQWDLNYLMQLWKAVDGAAVDNKAP 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP     V++Y D  P+
Sbjct: 204 LLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDNMNRVKKYRDDVPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q++S +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +TNLE
Sbjct: 264 FSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAIDVNSARATKGADIEETAARTNLE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRARVQ+G IS FGL+
Sbjct: 324 AADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRARVQMGKISRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  ++     I      
Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQVPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           +V  +LLN+KR  I   E RF V++ ++    L    + +E+       ++        +
Sbjct: 444 EVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDDPRLDEDKASYKMA 503

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
           +  + +   +  +        P+ E+             +    +R  R
Sbjct: 504 EEAAKELEADTAYSTRKEAAKPRQEAAVKGITPDQPAPVSVPRAERPAR 552



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKDGVDVRNARIQDALREGQELIVQVEKEERGN 110


>gi|159184719|ref|NP_354345.2| ribonuclease E [Agrobacterium tumefaciens str. C58]
 gi|159140007|gb|AAK87130.2| ribonuclease E [Agrobacterium tumefaciens str. C58]
          Length = 977

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 332/589 (56%), Positives = 405/589 (68%), Gaps = 9/589 (1%)

Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171
            T      +E +    +   + +++             ED     P+ V +K ++QY IQ
Sbjct: 211 DTDTISEEVEGLRRGNDDDDDDDDDDHHEKEVIESVGAEDAMEEVPDRVARKPRKQYRIQ 270

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
           EVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKIT P DRK 
Sbjct: 271 EVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKR 330

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
           LKEIAR LEVP GMGVILRTAGA+RT++EIKRDFEYLMRLW+NVR L LNS AP LVYEE
Sbjct: 331 LKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEE 390

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
           G+LIKR+IRDLY KDISEIIVSGE+GYREAKDFMK+LMPS+A++V+ Y D HPIF RSGI
Sbjct: 391 GSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGI 450

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E QLD + Q +VTL S GY+IINQTEALV+IDVNSGRSTREH IE+TAL TNLEAAEE+A
Sbjct: 451 EAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAEEVA 510

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRDLAGL+V+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG IS+FGLLEMSRQR
Sbjct: 511 RQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQR 570

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
           IR+SVLESTT+VC +C G G++RS+SS+AL +LR VEEYLL+ T HNI V    +  LYL
Sbjct: 571 IRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETALYL 630

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN-TGHKVGSDSQAPSY 590
           LN KR +IV+YE RFGV+I +     +  + F I++G  V+  V          S     
Sbjct: 631 LNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSFVEEE 690

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           D  +  V +DE    I K+ES +  Q         G  +++RRRRRR +   +  +  + 
Sbjct: 691 DDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRRRRGKGGQNEQNGALD 750

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
               +     D   D     +D    +  ENGA+               
Sbjct: 751 GQSGNDAEDDDAEGDDDGVETDEAGADSDENGANE--------AANADE 791



 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/178 (48%), Positives = 109/178 (61%), Gaps = 1/178 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVTIPNDHS 119
           YGGNRHGFL F EIHPDYYQIP +DRQALLK      +   +  + D       + +   
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDFESADAPESGAPMIDLSQ 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177
           +++       + ET + ++      V   V +             + +   + V + R
Sbjct: 121 VDQPDVGIVAASETTDVAVTEEVAPVSEAVSEETAVEVVAEEAPAEEEKPKKRVRRPR 178


>gi|113868542|ref|YP_727031.1| ribonuclease G and E [Ralstonia eutropha H16]
 gi|113527318|emb|CAJ93663.1| Ribonuclease G and E [Ralstonia eutropha H16]
          Length = 1024

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 207/669 (30%), Positives = 311/669 (46%), Gaps = 43/669 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L VP GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLTVPEGMSIIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A ++ AP L+Y E +L+ RAIRD +  DI EI++  ++ Y +A+ FM ++MP  
Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKV----------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
             +                     + S  +  E   + EA +     E    +       
Sbjct: 491 PRLEESTASYRMAEAAAKELEADTSYSSRRKEEAKPRQEAAVKGITPEQPAPVSVPRPER 550

Query: 623 ESTGVIRKRR---------------------RRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                                            R    P  +     V ++  S +   +
Sbjct: 551 APKPEAPVAPPVPATQPVVSGGFIAWLKGLFGARPATPPVVEPAKPAVATEARSAEGRRE 610

Query: 662 DSFDMYMEPSDITNHNLLENGAHG-------FTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                          +  E G            +  D +          +          
Sbjct: 611 RGQRGEGRGLRGERGDRAERGERAERGERQGRGQRGDRAERAERGERQGAERGEQREGRG 670

Query: 715 KTRWWKRRK 723
           + +  + R+
Sbjct: 671 ERQGRQPRQ 679



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGN 110


>gi|45442053|ref|NP_993592.1| ribonuclease E [Yersinia pestis biovar Microtus str. 91001]
 gi|108807930|ref|YP_651846.1| ribonuclease E [Yersinia pestis Antiqua]
 gi|149366506|ref|ZP_01888540.1| ribonuclease E [Yersinia pestis CA88-4125]
 gi|165925486|ref|ZP_02221318.1| ribonuclease E [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938509|ref|ZP_02227066.1| ribonuclease E [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008153|ref|ZP_02229051.1| ribonuclease E [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214603|ref|ZP_02240638.1| ribonuclease E [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402397|ref|ZP_02307860.1| ribonuclease E [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421715|ref|ZP_02313468.1| ribonuclease E [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|218928726|ref|YP_002346601.1| ribonuclease E [Yersinia pestis CO92]
 gi|229841578|ref|ZP_04461737.1| RNase E [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843690|ref|ZP_04463833.1| RNase E [Yersinia pestis biovar Orientalis str. India 195]
 gi|229894435|ref|ZP_04509617.1| RNase E [Yersinia pestis Pestoides A]
 gi|45436916|gb|AAS62469.1| ribonuclease E [Yersinia pestis biovar Microtus str. 91001]
 gi|108779843|gb|ABG13901.1| RNAse E [Yersinia pestis Antiqua]
 gi|115347337|emb|CAL20235.1| ribonuclease E [Yersinia pestis CO92]
 gi|149290880|gb|EDM40955.1| ribonuclease E [Yersinia pestis CA88-4125]
 gi|165913624|gb|EDR32244.1| ribonuclease E [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922595|gb|EDR39746.1| ribonuclease E [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992535|gb|EDR44836.1| ribonuclease E [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204210|gb|EDR48690.1| ribonuclease E [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960200|gb|EDR56221.1| ribonuclease E [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048230|gb|EDR59638.1| ribonuclease E [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|229689298|gb|EEO81361.1| RNase E [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697944|gb|EEO87991.1| RNase E [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703454|gb|EEO90471.1| RNase E [Yersinia pestis Pestoides A]
          Length = 1221

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|294625340|ref|ZP_06703976.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600358|gb|EFF44459.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 631

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 209/612 (34%), Positives = 319/612 (52%), Gaps = 12/612 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +    +G              +       +A L IP + ++  I+ +  +         
Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL----TKAQLNIPAAPAVTSIKPSQPAPVREEAPAP 544

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                            GVV  +  I   ++    +   P         + G +  +E  
Sbjct: 545 VAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEP---IAPAPESTPRPRQNDAGRNSRSERG 601

Query: 691 DVSIPPVSTPEM 702
           +         + 
Sbjct: 602 ERGGQRRDGRDA 613



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|298370247|ref|ZP_06981563.1| ribonuclease E [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281707|gb|EFI23196.1| ribonuclease E [Neisseria sp. oral taxon 014 str. F0314]
          Length = 989

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 198/625 (31%), Positives = 307/625 (49%), Gaps = 21/625 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD Y  DI EI+V  ++ + +  +FM  +MP+
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYYRPDIGEILVDNQEVHDQVAEFMSYVMPN 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488

Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEEST-- 625
               +        ++    +       E          +      +         +++  
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTVSGERQASWW 548

Query: 626 -----------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                      G        +      ++   A      +   N    +     +     
Sbjct: 549 DNFKAWLSRIFGNTPAPETAKAAEPEKSEKRSADSSRGSNRRGNSRRQNPRRSNKRDGSK 608

Query: 675 NHNLLENGAHGFTENYDVSIPPVST 699
                 N     T++   ++    +
Sbjct: 609 VEVQEINARAEETKDESKTLEQEES 633



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79


>gi|238754376|ref|ZP_04615732.1| Ribonuclease E [Yersinia ruckeri ATCC 29473]
 gi|238707409|gb|EEP99770.1| Ribonuclease E [Yersinia ruckeri ATCC 29473]
          Length = 1148

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 201/637 (31%), Positives = 321/637 (50%), Gaps = 26/637 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSHYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R G V   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + +    + +      P   +       +EA +   + E       ++ +E       
Sbjct: 491 KGEEVPTLSYLL------PKLHEEEMAQPLEEAPMERKRPEQPALATFSLPTEVPPEAEP 544

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE-------- 680
               +   +  A      G+   + S ++N+     +  ++P +       E        
Sbjct: 545 VTVAKPVAQPVAASAAQPGLFGRLMSGLKNLFAAPAEAEVKPQETEKTENTENRRQDRRN 604

Query: 681 --NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                +G  +  D   P       ES+  ++    ++
Sbjct: 605 PRRQNNGRKDRGDR-TPREGRENRESNRDNNTSTTRE 640



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|291084674|ref|ZP_06540858.2| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 650

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 193/623 (30%), Positives = 306/623 (49%), Gaps = 12/623 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSSSDP 711
               +    +       N +   
Sbjct: 608 PRQNNRRDRNERRDTRDNRARRD 630



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|15839196|ref|NP_299884.1| ribonuclease E [Xylella fastidiosa 9a5c]
 gi|9107829|gb|AAF85404.1|AE004067_11 ribonuclease E [Xylella fastidiosa 9a5c]
          Length = 1132

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 210/599 (35%), Positives = 322/599 (53%), Gaps = 16/599 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  +  D+ I      ++ + I        E S+ +A  D  ++      
Sbjct: 10  QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L +P  MGVI+RTAG  R   E++ D ++L+ 
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  AP L+Y+E  LI RA+RD +  DI EI+V  E+ Y++A +FM+ +MP
Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHEFMRHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y+D  P+F R  IE Q++  ++  V LPS G ++++QTEAL +IDVNS R+T
Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM   K+ R +E +L+  LK D
Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+  IS FGLLEMSRQR+R S+ ES+  VC YC G G +RS  S++LSI+R VEE+
Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V T  ++  YLLN+KR  I E E R    I ++   +L    + + +   
Sbjct: 429 AMKENTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629
            +    TG      +       +       ++ L IP + +++ I        +      
Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSIPPPQLAPTQENIPTI 544

Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           + +    R  P  +           +  +    Q   + S    ++ +   N    E  
Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERN 603



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  TDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGN 110


>gi|156934430|ref|YP_001438346.1| ribonuclease E [Cronobacter sakazakii ATCC BAA-894]
 gi|156532684|gb|ABU77510.1| hypothetical protein ESA_02261 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1058

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 200/624 (32%), Positives = 305/624 (48%), Gaps = 12/624 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A N  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  I   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKREAITAIETRQGGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   +  + D+        +    
Sbjct: 491 KGEETHTLSYMLPKLHEEAMALPSEDEYAERKRPEQPALATFVMPDVPPVPQETAAPKAE 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
               +       A      G +S   S    +  S       +        +N      E
Sbjct: 551 TAAPKAPVN---AAAPAKEGFLSRAISALKSLFASEPQAQPVASEPEQQPAKNRDEKQQE 607

Query: 689 NYDVSIPPVSTPEMESSNSSSDPI 712
             +           E  + S    
Sbjct: 608 RRNGRRQNNRRDRNERGDRSERGE 631



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|209548905|ref|YP_002280822.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534661|gb|ACI54596.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 965

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 321/535 (60%), Positives = 391/535 (73%), Gaps = 2/535 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149
           E+  A +               +    S+ E    +    + +++       +V+ +V  
Sbjct: 187 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDIDTSKRRHDDDDDDDDHGEEEVIESVGA 246

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ED     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL
Sbjct: 247 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 306

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM
Sbjct: 307 MPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 366

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE+GYREAKDFMK+LM
Sbjct: 367 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLM 426

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS
Sbjct: 427 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 486

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK 
Sbjct: 487 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 546

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR +EE
Sbjct: 547 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEE 606

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           YLL+ T HNI V T  D+ LYLLN KR TI++YE RFGV+I +     +  + F I++G 
Sbjct: 607 YLLKNTTHNISVRTTPDIALYLLNHKRQTIIDYENRFGVAIVIDADGSVGAQHFAIDRGE 666

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            V+  V         +     D +I     ++    + +  +  +      SE  
Sbjct: 667 AVENPVKIETLFNFAAIPEDDDDDIVIEIDEDEDEELEEKPAATERPVAARSEGE 721



 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/279 (35%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+       +     +DV H +     D S 
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLSK 116

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           ++   +     E  E + ++A       V   +        K   R+   +      +  
Sbjct: 117 QDQPDVGIVPAEAPETADVTAEPAAAEAVASPEATEEAPAKKARPRRSRKKAAEPAPETT 176

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +           A +      G     M    + ++IS  I     R +  +      
Sbjct: 177 ATEDAVPTDVEAEGASSVDNEDDGSTGGAMAAMVETDSISEDIDTSKRRHDDDDDDDDHG 236

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
               +  +            ++R      R+ + ++   
Sbjct: 237 EEEVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQ 275



 Score = 44.2 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 1/155 (0%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G   +           ++   S D         EA+                 +  +  V
Sbjct: 809 GEAGEDNGGDDGGEEGEADDVSNDGAPGEAETVEAVAEQAGESQAAAAAVEGAAIVAEDV 868

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              R R RR+   A         + V+  +  + ++      P+        +       
Sbjct: 869 KPARGRGRRKAAAAPVEEPVAEAAPVAEAEPELVEASADLETPAQEEAPEEAKPVRANRE 928

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            N   S P V +   E+  S  D   KK  WW+RR
Sbjct: 929 SNITSSEPTVKSTRSENGESD-DGKPKKAGWWQRR 962


>gi|330829707|ref|YP_004392659.1| ribonuclease E [Aeromonas veronii B565]
 gi|328804843|gb|AEB50042.1| Ribonuclease E [Aeromonas veronii B565]
          Length = 1027

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 210/680 (30%), Positives = 317/680 (46%), Gaps = 58/680 (8%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
             +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 7   QEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 66

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                 +       ++ +  I+EV++  Q ++VQI KEERG KGAA+TT++SLAG Y VL
Sbjct: 67  LKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVL 126

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE   GL VP GMG+I+RTAG  ++  E++ D   L+
Sbjct: 127 MPNNPRAGGISRRIEGDERTE-LKEALSGLTVPEGMGLIVRTAGVGKSPEELEWDLNVLL 185

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             WD++ + +    AP L+++E N+I RAIRD   +D+ EI++     +  AK  ++L+ 
Sbjct: 186 NHWDSIHKASQERAAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVR 245

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ Y+    +F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 246 PDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 305

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++ +
Sbjct: 306 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQ 365

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLEMSRQR+R S+ ES++ +C  C+G G IR   S+ALSILR +EE
Sbjct: 366 DRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSILRLIEE 425

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     +      DV  YLLN+KRA I   E R  V + ++    L    + + +  
Sbjct: 426 EAMKDNTEQVHGQVPVDVAAYLLNEKRAAIASLEQRNDVRVYIIPNQHLETPHYEVTRIR 485

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------------------------- 601
             +      +++ ++   P Y      V + E                            
Sbjct: 486 QNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFAQPAQPAPVAPQQPAAPVAAA 545

Query: 602 ------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
                             +    P        +            R +R   R R     
Sbjct: 546 PAEAGFFSKLIKGITGLFSSDAAPADVKAPTEKPAAREARKDEGQRHQREEGRGRGQRPR 605

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSD------ITNHNLLENGAHGFTENYDVSIPPV 697
             D     + +      +       E  +             E      +E      P  
Sbjct: 606 RDDNRGNRNNAEAGEKREGGNREAGENRNRRPRKEREPRQEREARGEVRSEQRMEREPRQ 665

Query: 698 STPEMESSNSSSDPIVKKTR 717
                E     +    ++ R
Sbjct: 666 EREPREPRQERAPRPAREPR 685



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIARNYF 75


>gi|186895873|ref|YP_001872985.1| ribonuclease E [Yersinia pseudotuberculosis PB1/+]
 gi|186698899|gb|ACC89528.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis PB1/+]
          Length = 1235

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  EE+  V +
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685
            +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N    
Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +           E  ++SS     + 
Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|317047699|ref|YP_004115347.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b]
 gi|316949316|gb|ADU68791.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b]
          Length = 1081

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 196/603 (32%), Positives = 303/603 (50%), Gaps = 12/603 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPEGMGLIVRTAGVGKSAESLQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKDNTKEVHAIVPVPVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQA----PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
             +      + +    +A    PS ++  E    ++  L              +  E   
Sbjct: 491 KGEETQTLSYHLPKLHEAEMALPSEEEQAERRRPEQPALAAFVMPDAPPAPVEVAEESQP 550

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
            V  + ++ +     A      G ++ +      +         P               
Sbjct: 551 VVKAEPKKAKPTATVAAPAASTGFMARLLGGLKKLFVGDAPAAAPEASEKQESKATDGEN 610

Query: 686 FTE 688
             +
Sbjct: 611 GQQ 613



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|238026594|ref|YP_002910825.1| ribonuclease E [Burkholderia glumae BGR1]
 gi|237875788|gb|ACR28121.1| Ribonuclease E [Burkholderia glumae BGR1]
          Length = 1125

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 196/539 (36%), Positives = 300/539 (55%), Gaps = 8/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    LE+P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLEIPEGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVR--ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +     + ++  P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 HAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVI 628
             A ++        ++  + +   E  +        PK E+  + I  +  +  +    
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTGDVKPKQEAAVKGITPDHPAPGAPQRE 549



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|59712355|ref|YP_205131.1| hypothetical protein VF_1748 [Vibrio fischeri ES114]
 gi|59480456|gb|AAW86243.1| rne [Vibrio fischeri ES114]
          Length = 994

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 192/565 (33%), Positives = 305/565 (53%), Gaps = 13/565 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  ++        
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ V+  + ++ AP L+++E N+I RAIRD   +DI EI++   K +  A+  ++L+ P 
Sbjct: 191 WEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ YE   P+F    IE Q++S  + EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKLYEGEVPLFSHYQIESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V + +V   ++    F + +    
Sbjct: 431 LKDNTTQVLAVVPVSIASYLLNEKRRSVQHIEKFHDVRVIIVPNSDMETPHFEVIRIRDG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +         +   E   ++  ++ I   +  E +     +      + K 
Sbjct: 491 EEQEMLSYLL-----PKKLEALREAESKEAPVVNIAPKKREEPVLQGFSAPTQAAPVAK- 544

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSI 656
             +  ++  A      G++S     
Sbjct: 545 -AQPEKKAEAKTEEKPGIISRFFKA 568



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
            +RHGFLP  EI  +Y      YQ   + +  L +   +     +    + 
Sbjct: 62  ADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNK 112


>gi|54308379|ref|YP_129399.1| putative ribonuclease E [Photobacterium profundum SS9]
 gi|46912807|emb|CAG19597.1| Putative ribonuclease E [Photobacterium profundum SS9]
          Length = 1100

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 215/685 (31%), Positives = 323/685 (47%), Gaps = 61/685 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  S         
Sbjct: 12  EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPKGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  V+E A ++ AP L+++E N+I RAIRD   +DI EI++   K +  A++ +KL+ P 
Sbjct: 191 WSAVKEAADSNSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRAREHIKLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA QTNLEAA+E+ARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETAFQTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  VC  C G G +R   S++LSILR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  ++      V  YLLN+KR ++   E    V + +V   E+    F + +    
Sbjct: 431 LKDNSAQVLAIVPVAVASYLLNEKRRSVQHIEKFHTVRVVIVPNAEMETPHFEVLRIREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK----------------------- 608
                  +++    +A    +  E   Q+  +    +                       
Sbjct: 491 DQKDTLSYQMPKVIEAIKEAEAAEAPQQERVIKKHEEPVLQGFASPKTPAPVVAVKPKPA 550

Query: 609 ---------------------------SESLEDIQDNIVSEESTGVIRKRRR-RRRRRRP 640
                                      S S E + +  V E+       RR  R+  RR 
Sbjct: 551 APAKAVAAAEAKPGLFNRLFSALTNLFSASTEQVPEKKVEEKQDNRNDNRRGDRQGNRRN 610

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEP----SDITNHNLLENGAHGFTENYDVSIPP 696
            T  +D     D S   N  D   D                               S   
Sbjct: 611 DTRRNDTRRNKDSSRRNNRQDSDRDNSETSGEQRQQRQQRPRRNEKPQHDKTAKQRSPRS 670

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKR 721
               +    +  +    ++    + 
Sbjct: 671 EDKRQPRKDDVQAPKAPRRQDEQQP 695



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  E+  DY      YQ   + ++ L +   +     +    + 
Sbjct: 62  SERHGFLPLKEVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112


>gi|300704631|ref|YP_003746234.1| ribonuclease e [Ralstonia solanacearum CFBP2957]
 gi|299072295|emb|CBJ43628.1| Ribonuclease E [Ralstonia solanacearum CFBP2957]
          Length = 1018

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 211/693 (30%), Positives = 320/693 (46%), Gaps = 70/693 (10%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V   A  + AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP  
Sbjct: 191 KAVDGAASENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALV++DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 -------------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEA----------- 602
                                 +T +    ++  P  +  ++ +  ++            
Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAVKPRQEAAVKGITPEQPAPVSVPRAERP 550

Query: 603 -----------------------------------LLPIPKSESLEDIQDNIVSEESTGV 627
                                                P+  +      +    S    G 
Sbjct: 551 ARAEAAPAAAPQASAPVPAQGGFMSWLKSLFGGKPAEPVVAAPVETPKRAEDGSRRDRGN 610

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            ++R  R  +R    +  +          Q    +                 E       
Sbjct: 611 RQERGGRSGQRGERGERSERQGQQGGRDGQRQGREGSRNEAREGQAQREGQREGQRESQR 670

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
            N D +  P  T + E+  +      ++ R  +
Sbjct: 671 GNRDRNRQPAETTDRETVEARQPQQGQEARDGQ 703



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110


>gi|146340471|ref|YP_001205519.1| putative ribonuclease E [Bradyrhizobium sp. ORS278]
 gi|146193277|emb|CAL77293.1| putative ribonuclease E [Bradyrhizobium sp. ORS278]
          Length = 1071

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 276/471 (58%), Positives = 357/471 (75%), Gaps = 3/471 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
               +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+
Sbjct: 346 EEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 405

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKIT+  DR  LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+RLW+ 
Sbjct: 406 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGANRTKPEIKRDFEYLLRLWET 465

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VR++ L S AP LVYEEG+LIKR++RDLY K+I EI+V+GE GYREA DFMK+LMP+  R
Sbjct: 466 VRDMTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEILVAGEAGYREAHDFMKMLMPTNVR 525

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+QY D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGR+TREH 
Sbjct: 526 AVKQYRDGQPLFSRMGVESQLDAMFTPTVQLRSGGYIVINQTEALVSIDVNSGRATREHH 585

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNRSVE+KL + L++DRAR+
Sbjct: 586 IEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRSVERKLSDCLRQDRARI 645

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LRS+EE L++ 
Sbjct: 646 QVGRISHFGLLEMSRQRIRASVLESSTEPCAHCGGSGHVRSVSSVALQLLRSLEEALMKG 705

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573
             HN++V T ++V LY+LN KR  + + E  F VS+ V+    +   + F I++G  V  
Sbjct: 706 ATHNLVVRTRTEVALYVLNHKRGHLRDLENSFKVSLAVIADPNVSGQQSFIIDRGEQVHT 765

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           L      + + + AP      E ++ DE    +     +E  +   +SEE+
Sbjct: 766 LEAAKALLAAQASAP--PLVAEEIYDDEEAFDVEIESEVETEETEGLSEEA 814



 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E   ++ ++           
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEERAHREAEEENENRSNRRRNRHRSSRR 120

Query: 121 EEVAPIANFSQ-ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173
                       E  E           ++ E  +  +             I E 
Sbjct: 121 RGSGERVQSEIVEAAESGQTVHAEGHEADHEAHEHHAYAGDDHPDHPHAEIDEH 174


>gi|323526883|ref|YP_004229036.1| Rne/Rng family ribonuclease [Burkholderia sp. CCGE1001]
 gi|323383885|gb|ADX55976.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1001]
          Length = 1080

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 207/627 (33%), Positives = 318/627 (50%), Gaps = 11/627 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +K  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGSAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR+ I + E+RF V++ +V    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +        PK E+            S  V   
Sbjct: 491 DDARLDDPRASWKMAEEAAREMESETGYSKRTEEVKPKQEAAVKGITPEKPAPSAPVRPA 550

Query: 631 RRRRRRRRRPATDHHDAGVVS----DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                    PA+      + +      ++   V+  + +    P         E G    
Sbjct: 551 AEPAPVAATPASGGFIGWLKNLFGMQPAAPAPVVPATPEKQARPQRGERQERGERGGDRN 610

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713
                 + P  +    E +N       
Sbjct: 611 RNRRGGAGPRDAAARPEGTNGGRQSQQ 637



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGN 110


>gi|238795958|ref|ZP_04639470.1| Ribonuclease E [Yersinia mollaretii ATCC 43969]
 gi|238720163|gb|EEQ11967.1| Ribonuclease E [Yersinia mollaretii ATCC 43969]
          Length = 1138

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 197/629 (31%), Positives = 317/629 (50%), Gaps = 11/629 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +    +A       E   + +   P   + +   +   +  E +   + 
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPQEEATIERK--RPEQPALATFSLPTEVPPESTPAPVS 545

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +     +   +T     G+ S + +    I   S +  ++P ++      EN  +    
Sbjct: 546 AKPAAAPQTAASTTAEQPGLFSRLLTGLKGIFSSSPEAEVKPVEVEKTETSENRRNDRRN 605

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
               +       +        +       
Sbjct: 606 PRRQNNGRKDRGDRTPREGRDNASRDNNG 634



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|33597842|ref|NP_885485.1| ribonuclease E [Bordetella parapertussis 12822]
 gi|33574271|emb|CAE38603.1| ribonuclease E [Bordetella parapertussis]
          Length = 1041

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 204/583 (34%), Positives = 305/583 (52%), Gaps = 18/583 (3%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR++     ++ L++    L+VP GM +I RTAG  R   E++ D  YL++L
Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQL 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A ++ AP L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM ++MP 
Sbjct: 190 WTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             + V++Y D  P+F R  IE Q+++ +   V LPS G V+I+ TEALV++DVNS RSTR
Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTR 309

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME++KN R+VE++L+++L  DR
Sbjct: 310 GADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDRKNQRAVEQRLRDALHFDR 369

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G IR   S AL +LR ++E  
Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA I + EAR  V++ ++    L     +IE+    
Sbjct: 430 MKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
              +         ++AP+ D   +    +    P    + +   Q   VS  +       
Sbjct: 490 DPRLEKSKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAA 549

Query: 632 RRRRR----------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDIT 674
               +                   PA     +      ++      D  D   E      
Sbjct: 550 AAATQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDRRGERHGSDR 609

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           N +          E+ D           E      +   K+ R
Sbjct: 610 NRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEAR 652



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110


>gi|118590067|ref|ZP_01547471.1| ribonuclease E [Stappia aggregata IAM 12614]
 gi|118437564|gb|EAV44201.1| ribonuclease E [Stappia aggregata IAM 12614]
          Length = 929

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 302/580 (52%), Positives = 381/580 (65%), Gaps = 9/580 (1%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
           V S   +       +     ++QY IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAG
Sbjct: 218 VESVGAEDAMEEVPERIIPLRKQYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAG 277

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RYSVLMPNT++G  ISRKIT P DRK LK+IA  L+VP GMGVILRTAGASRTK EIKRD
Sbjct: 278 RYSVLMPNTARGGGISRKITQPTDRKRLKKIASELDVPEGMGVILRTAGASRTKAEIKRD 337

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           FEYLMRLW+NVREL L S AP LVYEEG+L+KR+IRDLY KDI+E++V+GE+GYREAKDF
Sbjct: 338 FEYLMRLWENVRELTLKSSAPSLVYEEGSLVKRSIRDLYNKDINEVLVAGEEGYREAKDF 397

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           M++LMPS+A+ V+ Y DP P+F R G+E QLD++   +VTL S GY++INQTEALVSIDV
Sbjct: 398 MRMLMPSHAKNVQPYRDPSPLFIRYGVEPQLDAMFSPQVTLKSGGYIVINQTEALVSIDV 457

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           NSG+STREH IEDTALQTNLEAAEE+ RQLRLRDLAGLIV+DFIDMEE KNNRSVE+KLK
Sbjct: 458 NSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLAGLIVIDFIDMEESKNNRSVERKLK 517

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + LK DRAR+QVG IS+FGLLEMSRQRIR+ VLES+T  C +C+G G IRS  SVAL +L
Sbjct: 518 DCLKNDRARIQVGRISHFGLLEMSRQRIRTGVLESSTTPCPHCQGTGMIRSVESVALHVL 577

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           RSVE+ LL+  +HN+I+ T + V LY+LNQKR+ +V+ E RF + + V     +  +L+ 
Sbjct: 578 RSVEDNLLKGASHNLIIRTTTQVALYILNQKRSNLVDLETRFAIDVEVHADDMVNGQLYV 637

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +E+G+PV         V +  Q  + D   E   Q +      + +  +  +     +  
Sbjct: 638 LERGAPVDR-DRVPMPVPAIVQPDTIDIIDEDTEQPDIEEFAQQEDDNDGRRRRRRRKRR 696

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP--------SDITNH 676
                 ++     R+ + +  DA    D    Q       D   EP              
Sbjct: 697 RNGSDNQQDDGESRQASAEADDADSDGDDDQPQEARSGEEDGDDEPRRKRRRGRRGGRRG 756

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               + A       +         E  +S+   D      
Sbjct: 757 RRNGDEAQAEGGAENDGETNGDNREAATSDEQQDDQAGSD 796



 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 99/155 (63%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MANKMLIDAGHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ALL      +   ++  ++            + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALLAAEAADRQRDDSDGEEKPKRRRRSRAARNE 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155
              +  ++  +    +     + + V   ++  G 
Sbjct: 121 ATDSVASDKVEADASDEATEGDEEAVKAADETDGE 155


>gi|253688888|ref|YP_003018078.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755466|gb|ACT13542.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 1113

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 212/701 (30%), Positives = 320/701 (45%), Gaps = 75/701 (10%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++S+++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAVIVPHDGMQTPHYSVVRVR 490

Query: 570 PVQALVNTGH----------------------------------KVGSDSQAPSYDKNIE 595
             +      +                                         APS  K   
Sbjct: 491 KGEEKPTLSYLLPQRLETETQQQQDEQTIERKQPEQPALATFTMAEMPAETAPSVAKATP 550

Query: 596 CVWQDEALLP----------------IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
              +                         +    D  D   +EE      +R  RR  RR
Sbjct: 551 AAAKPAETAQPGLISRFFSALKSAFASEPAVKAADSVDEKKAEEEKSADGQRSERRNSRR 610

Query: 640 PATDHHDAGVVSDVSSIQNV--IDDSFDMYMEPSDITNHNLLENGAHGFTENY------- 690
              +  D     D  S  N    D+      +  ++   N  +  +              
Sbjct: 611 QGNNRRDRNSRDDRGSRDNREQRDEQRRNKRQNEEVVAENAEKTSSEEQPRREPRAERQR 670

Query: 691 --------DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                     S    + P ++ S+ ++    K T+   RR+
Sbjct: 671 RRQDERRQASSNEAKAQPAIDDSDDNATEQDKPTQVMPRRQ 711



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254521153|ref|ZP_05133208.1| ribonuclease, Rne/Rng family protein [Stenotrophomonas sp. SKA14]
 gi|219718744|gb|EED37269.1| ribonuclease, Rne/Rng family protein [Stenotrophomonas sp. SKA14]
          Length = 1086

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 198/501 (39%), Positives = 288/501 (57%), Gaps = 5/501 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  +  D+ I      ++ + I        E S+ +A  +          
Sbjct: 7   QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGGRHGFLP 66

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  LKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LK+    L +P  MGVI+RTAG  R   E++ D +YL+ 
Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKDALDKLNIPDDMGVIIRTAGVGRDAEELQWDLDYLLN 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W  + E AL+  AP L+Y+E  LI RA+RD    DI EI+V  E+ Y  A++FM+ +MP
Sbjct: 186 VWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAREFMQQVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y+D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 246 QTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L  +LK D
Sbjct: 306 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLANALKYD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 366 RARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPHYTVTRLRE 485

Query: 571 VQALVNTGHKVGSDSQAPSYD 591
            +    +              
Sbjct: 486 NELGEESNKPSYQRGTPRKLP 506



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 62/107 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++ R+EPSL+AAFV+YGG 
Sbjct: 1   MLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGG 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 61  RHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGN 107


>gi|78485048|ref|YP_390973.1| ribonuclease [Thiomicrospira crunogena XCL-2]
 gi|78363334|gb|ABB41299.1| RNAse E [Thiomicrospira crunogena XCL-2]
          Length = 752

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 203/688 (29%), Positives = 329/688 (47%), Gaps = 60/688 (8%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            ++    A+ D     D+ +   H  ++ A I   +    E S+ +A  D  +       
Sbjct: 10  QSEEVRIALVDGQKLYDLDVETPHHQKKKANIYKGTITRIEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +         K   +  I++++K  Q ++VQ+ KEERGNKGAA+TT ++LAG Y V+M
Sbjct: 70  FKEIAEEYYPDNKSSGRLSIKDILKEGQEVIVQVQKEERGNKGAALTTQITLAGPYVVMM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  K   ISR+I      +  ++  + L +P GMG+I+RTAG  ++  E++    YL++
Sbjct: 130 PNNPKAGGISRRIEGEDRSET-RDALQDLNMPEGMGLIIRTAGVGKSTEELQWGVNYLVQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ +++ +    AP L+++E +++  AIRD   +DI EII+   + + +A+DF++ +MP
Sbjct: 189 LWEAIQKASKEKSAPFLIHQESDIVILAIRDYLRQDIGEIIIDDMETFHKARDFVQHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V+ Y+D  P+F R  +E Q+++ +  EVTLPS G ++I+ TEAL SID+NS RST
Sbjct: 249 HQVYKVKPYQDTIPLFTRFQVESQIETAYTREVTLPSGGAIVIDITEALTSIDINSSRST 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA  TNLEAA EIARQLRLRD+ GL+V+DFIDM   ++ R VE K++E++K D
Sbjct: 309 KGGDIEETAYHTNLEAACEIARQLRLRDIGGLVVIDFIDMHSNRHQRDVENKMREAVKSD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGLLEMSRQR+R S+ EST  VC  C G G IR   S+ALSILR +EE 
Sbjct: 369 RARVQIGKISRFGLLEMSRQRLRPSIEESTQMVCPRCNGVGVIRGVQSLALSILRLLEEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     + V    DV  +LLN+KR  I+  E R  + + +V    L    + +E+   
Sbjct: 429 AMKENTRRVTVQLPVDVATFLLNEKRHQIINIEDRHNLHVLIVPNEHLDTPDYLMERTRS 488

Query: 571 VQALVNTGHKVGSD--SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES---- 624
              +         +   +     +++  + ++E  +   +  S          E+     
Sbjct: 489 GDEMSTDSSYKIKEFIDKETQQKQDLPTIAKEEPAIKNMQPSSPPPAPTPKTEEKPGLFV 548

Query: 625 -------------------------------------------------TGVIRKRRRRR 635
                                                            +        + 
Sbjct: 549 RLWKTLFAAEEPEKEEEPQKAGNKGRNNRNNNNRNRNNNNRNRNNRRRPSSENDDNTDKN 608

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
             R+      +          +N                  +     A   TE+      
Sbjct: 609 EPRKENKRSDNKASDKPSEPRENPRRRRPRNAQSEKPEVKEDKTTKAASNRTEDSSRPSK 668

Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             ++ E  + ++++ P  K+     RR+
Sbjct: 669 AATSEEAATPDTTNKPTKKEQSDRPRRR 696


>gi|294341012|emb|CAZ89407.1| Ribonuclease E (RNase E) [Thiomonas sp. 3As]
          Length = 1009

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 199/517 (38%), Positives = 287/517 (55%), Gaps = 6/517 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            ++    A+ D     D+ I      +    I        E S+ +   D          
Sbjct: 10  QSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYGEERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  IQ+VI   Q LLVQ+ KEERGNKGAA+TT +SLAGRY VLM
Sbjct: 70  FKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I     ++ L+E    L+ P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGEDRQE-LRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  VR+ +       L+Y+E +L+ RAIRD +  DI EI++  E  + +A+ FM  +MP
Sbjct: 189 LWSAVRDASETQKGAFLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LP+ G ++I+ TEALV++DVNS RST
Sbjct: 249 DTVDRVKRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R + IEDTAL+TNLEAA+E+ARQ+RLRDL GLIVVDFIDMEE +N R+VE +L++++++D
Sbjct: 309 RGNAIEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQV  IS FGLLE+SRQR+R ++ E     C  C G G+IR   S AL ILR ++E 
Sbjct: 369 RARVQVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     + V    +V  +LLN+KRA I + E R  +S+ ++    L    + +E+   
Sbjct: 429 AMKEGTAAVHVQVPVEVASFLLNEKRAEITKIELRQRLSVLLIPNKHLDTPNYKLERLKH 488

Query: 571 VQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
               L N         +A           +       
Sbjct: 489 DDPRLDNLPTSYKMADEAEEDTAITRREKEQRPRQEA 525



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E   ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLFNATQSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF EI   Y++   S  QA +++            +    G+
Sbjct: 62  EERHGFLPFKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGN 110


>gi|37526731|ref|NP_930075.1| ribonuclease E [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786163|emb|CAE15215.1| ribonuclease E (RNase E) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1034

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 199/635 (31%), Positives = 313/635 (49%), Gaps = 18/635 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPNNYHPHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LEVP GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLEVPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A N  AP L+++E N+I RA RD    DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAENRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLARQHITALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G V+I+ TEAL +ID+NS R+T
Sbjct: 251 DFTSKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGAVVIDTTEALTAIDINSSRAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  +   E R G V + +V   ++    F + +  
Sbjct: 431 ALKENTHQVHAIVPVQIASYLLNEKRQAVSAIERRQGDVGVVIVPNDQMQTPHFSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + +    + +           +      +     P   + +L                
Sbjct: 491 KGEEISALSYLLPQFHEAGAINPQEDVQPERKRPEQPAISAFALPADTPAQQPS------ 544

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K + ++      T     G++S   +    +  +     +P+    + L  +     +E
Sbjct: 545 HKAKEKKPNHTAQTITEQPGLLSRFLTALKKMFSTEAEEEKPAQKKENKLSGHDNRRSSE 604

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +              +++     +  R    ++
Sbjct: 605 RRNQRRQNSRKDR---DDNNLRDEQRNNRDRDEQR 636



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|332525769|ref|ZP_08401916.1| ribonuclease E [Rubrivivax benzoatilyticus JA2]
 gi|332109326|gb|EGJ10249.1| ribonuclease E [Rubrivivax benzoatilyticus JA2]
          Length = 536

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 199/529 (37%), Positives = 289/529 (54%), Gaps = 5/529 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D     +   +    I        E S+ +   D   +        
Sbjct: 9   EERRLAIVDGQKLLDFETELEGREQRKGNIYKAVITRVEPSLEACFVDYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            +   IQ+V+K  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EISRNYFKDGVELKNARIQDVVKEGQELLVQVEKEERGNKGAALTTFVSLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  +SR+I      + LKE    L+ P GM +I RTAG  R+  E++ D  Y+++LW
Sbjct: 129 NPKGGGVSRRIEGEDREE-LKENLEQLQYPKGMSLIARTAGIGRSAAELQWDLNYMLKLW 187

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           D +   +       L+Y+E +L+ RAIRD +  DI EI++  +  Y +A+ FM  +MP  
Sbjct: 188 DAIDGASKAGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYDQAQQFMNHVMPES 247

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D  P+F R  IE Q+++     V LPS G ++I+ TEALVS+DVNS RSTR 
Sbjct: 248 ASRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSVDVNSARSTRG 307

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+EIARQ+RLRDL GLIVVDFIDMEE KN R VE++L+++L+ DRA
Sbjct: 308 SDIEETAFRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQRLRDALRTDRA 367

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ  +IS FGLLE+SRQR+R ++ E     C  C G G+IR   S AL ILR V+E  +
Sbjct: 368 RVQFSSISKFGLLELSRQRLRPALSEGNHITCPRCNGTGHIRDTESSALQILRMVQEEAM 427

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    +V  +LLN+KR  I + E +  V++ +V    L    + +E+     
Sbjct: 428 KENTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVILVPNKHLETPNYKLERLRHDD 487

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             +       +  + P  +  I             +   ++ +  +  +
Sbjct: 488 PRLENLQASYTMVEEPDEEVGITRRRDANDKGRSKQEPVIKGVLPDQPA 536



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 65/107 (60%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A +TRVEPSL+A FVDYG +
Sbjct: 1   MLINATQPEERRLAIVDGQKLLDFETELEGREQRKGNIYKAVITRVEPSLEACFVDYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF EI  +Y++     + A +++      +     +    G+
Sbjct: 61  RHGFLPFKEISRNYFKDGVELKNARIQDVVKEGQELLVQVEKEERGN 107


>gi|330861061|emb|CBX71330.1| ribonuclease E [Yersinia enterocolitica W22703]
          Length = 1157

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +       + +     P   + SL        +  +  V 
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPPESAPAAANVK 547

Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                +      A              G+    +  +    +        +   +     
Sbjct: 548 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 607

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
              +G  +  D   P          N++ D   +      
Sbjct: 608 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 646



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|318606163|emb|CBY27661.1| ribonuclease E [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 1152

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +       + +     P   + SL        +  +  V 
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPPESAPAAANVK 547

Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                +      A              G+    +  +    +        +   +     
Sbjct: 548 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 607

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
              +G  +  D   P          N++ D   +      
Sbjct: 608 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 646



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|294664686|ref|ZP_06730019.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605539|gb|EFF48857.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 711

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 207/612 (33%), Positives = 317/612 (51%), Gaps = 9/612 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS  +T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSHAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L+ +LK D
Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I V    +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIERRHESPIIVAADEQLHTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +    +G              +       +A L IP + ++  ++ +  +         
Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL----TKAQLNIPAAPAVTSVKPSQPAPVREEAPAP 544

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P         + G +  +E  
Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPIAPAPESTPRPRQNDAGRNNRSERG 604

Query: 691 DVSIPPVSTPEM 702
           +         + 
Sbjct: 605 ERGGQRRDGRDA 616



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110


>gi|187928000|ref|YP_001898487.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J]
 gi|187724890|gb|ACD26055.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J]
          Length = 1011

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 200/542 (36%), Positives = 295/542 (54%), Gaps = 5/542 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAYFKDGVDVRGARIQDALSEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    LEVP GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLEVPDGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V   A+++ AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP  
Sbjct: 191 KAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALV+IDVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAIDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETAARTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             ++        ++  + +   +  +        P+ E+             +    +R 
Sbjct: 491 PRLDDDKASYKMAEEAAKELEADTAYSTRKETAKPRQEAAVKGITPDQPAPVSVPRAERP 550

Query: 633 RR 634
            R
Sbjct: 551 VR 552



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKDGVDVRGARIQDALSEGQELIVQVEKEERGN 110


>gi|296136843|ref|YP_003644085.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
 gi|295796965|gb|ADG31755.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
          Length = 998

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 199/517 (38%), Positives = 287/517 (55%), Gaps = 6/517 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            ++    A+ D     D+ I      +    I        E S+ +   D          
Sbjct: 10  QSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYGEERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  IQ+VI   Q LLVQ+ KEERGNKGAA+TT +SLAGRY VLM
Sbjct: 70  FKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I     ++ L+E    L+ P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGEDRQE-LRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  VR+ +       L+Y+E +L+ RAIRD +  DI EI++  E  + +A+ FM  +MP
Sbjct: 189 LWSAVRDASETQKGAFLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LP+ G ++I+ TEALV++DVNS RST
Sbjct: 249 DTVERVKRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R + IEDTAL+TNLEAA+E+ARQ+RLRDL GLIVVDFIDMEE +N R+VE +L++++++D
Sbjct: 309 RGNAIEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQV  IS FGLLE+SRQR+R ++ E     C  C G G+IR   S AL ILR ++E 
Sbjct: 369 RARVQVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     + V    +V  +LLN+KRA I + E R  +S+ ++    L    + +E+   
Sbjct: 429 AMKEGTAAVHVQVPVEVASFLLNEKRAEITKIELRQRLSVLLIPNKHLDTPNYKLERLKH 488

Query: 571 VQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
               L N         +A           +       
Sbjct: 489 DDPRLDNLPTSYKMADEAEEDTAITRREKEQRPRQEA 525



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E   ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLFNATQSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF EI   Y++   S  QA +++            +    G+
Sbjct: 62  EERHGFLPFKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGN 110


>gi|121611691|ref|YP_999498.1| ribonuclease [Verminephrobacter eiseniae EF01-2]
 gi|121556331|gb|ABM60480.1| RNAse E [Verminephrobacter eiseniae EF01-2]
          Length = 1038

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 195/515 (37%), Positives = 284/515 (55%), Gaps = 1/515 (0%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRIEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +       P     Q  I EVIK  Q LLVQI KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EIARSYFSPGAAPGQARINEVIKEGQELLVQIEKEERGNKGAALTTFVSLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPGGMSIIARTAGIGRSAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           + +   A +     L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP +
Sbjct: 191 NAIDGAAQSGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D   +F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AARVKRYRDAAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IEDTA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+E+L++DRA
Sbjct: 311 GDIEDTATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLREALRQDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ G IS FGL+EMSRQR++ ++ E ++  C  C G+G+IR   S AL ILR ++E  +
Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPALAEGSSIPCPRCGGSGHIRDTESSALQILRIIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      +V  +LLN+KR  I + E R  VS+ +V    L    + +E+     
Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIEFRQRVSVLMVPNKTLETPNYRLERLKHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
             ++        ++       +    Q+      P
Sbjct: 491 PRLDHIEASYKLAEEVQDPTAVTRRSQEPTNKQTP 525



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTR+EPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRIEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    +  QA + E      +     +    G+
Sbjct: 62  EDRHGFLPFKEIARSYFSPGAAPGQARINEVIKEGQELLVQIEKEERGN 110


>gi|170700218|ref|ZP_02891234.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
 gi|170134851|gb|EDT03163.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
          Length = 1051

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 196/539 (36%), Positives = 296/539 (54%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +        PK E+            S    R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPSAAPQR 549



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|300691997|ref|YP_003752992.1| ribonuclease E [Ralstonia solanacearum PSI07]
 gi|299079057|emb|CBJ51719.1| Ribonuclease E [Ralstonia solanacearum PSI07]
          Length = 1015

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 198/539 (36%), Positives = 294/539 (54%), Gaps = 5/539 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V   A+ + AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP  
Sbjct: 191 KAVDGAAVENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALV++DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             ++        ++  + +   +  +        P+ E+             +    +R
Sbjct: 491 PRLDDSKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPAPVSVPRPER 549



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110


>gi|261856343|ref|YP_003263626.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2]
 gi|261836812|gb|ACX96579.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2]
          Length = 1016

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 197/568 (34%), Positives = 299/568 (52%), Gaps = 5/568 (0%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++     +      K +  I+  +K  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL
Sbjct: 71  KEIARSYFDSEAVDDKGRPIIKSALKEGQEIIVQVEKEERGNKGAALTTFVSLAGRYLVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   +SR+I      + +K     L VP GMG+I+RTAG  R   E++ D +YL 
Sbjct: 131 MPNNPRAGGVSRRIEGDDRAE-IKAALSELVVPEGMGLIVRTAGVGREPAELQSDLDYLQ 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           ++WD + + +    AP L+Y+E +LI RA+RD    DI E+++     +++A DF+ L+ 
Sbjct: 190 QVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMHQQALDFVNLVS 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P     +R Y+D  P+F R  IE Q++S ++  VTLPS G ++ +  EAL ++D+NSGRS
Sbjct: 250 PDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEALTAVDINSGRS 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IEDTA  TNLEAA+EIARQLRLRDL GL+V+DFIDM + K+ R VE +L+++LK 
Sbjct: 310 TKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQREVENRLRDALKM 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGLLEMSRQR+ +S+ ES   VC  C G G+IRS  S+ALSI+R + +
Sbjct: 370 DRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVESLALSIMRLMID 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     ++     DV  YLLN+KR  + E E    V + V+  I L    F IE+  
Sbjct: 430 ESMKDQTGRVVAQVPVDVGTYLLNEKRLQLHEIEQNHQVEVLVIPNINLETPHFKIERVR 489

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                 +  +             ++E         P    E +  +  +    +    + 
Sbjct: 490 RSDLAESPANSRALIEPLAVAVPDLERA----PRRPAAPVEPIRPVPQSAPRPKVVASVP 545

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                      A +    G++  V        D        +         +      ++
Sbjct: 546 DVATEPAASTSAANIGALGLLKRVIGQIFGAGDKRVEAEVAAPRDPARKASSNRPPRAKD 605

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            + + P         ++ S   +  K R
Sbjct: 606 ENRATPNRLPRAATQTSESEARLEDKRR 633



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 7/112 (6%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E+   +Q K N+Y A +TR+EPSL+A FV+YG
Sbjct: 2   KRMLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSD-------RQALLKESNIAQTDSEAVADDV 107
            +RHGFLPF EI   Y+     D       + AL +   I     +    + 
Sbjct: 62  ADRHGFLPFKEIARSYFDSEAVDDKGRPIIKSALKEGQEIIVQVEKEERGNK 113


>gi|257465575|ref|ZP_05629946.1| ribonuclease E [Actinobacillus minor 202]
 gi|257451235|gb|EEV25278.1| ribonuclease E [Actinobacillus minor 202]
          Length = 970

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 204/626 (32%), Positives = 324/626 (51%), Gaps = 15/626 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ ++  A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKNAAQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ +C  C+G G +R   S+ALSILR VEE  
Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLVEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  +      +V  YLLN+KR  I   E R  V++ VV    +    F + +    
Sbjct: 431 IKENSAQVHAIVPVEVASYLLNEKRKAISGIEKRHDVNVVVVPSESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           + +    + +         +++      +     + ++E +  ++  + S E        
Sbjct: 491 EIVPTLSYDLAKHYHEREEEEHSFHHHVNSDEALVSRNEPVITVETVLNSSELNLQPAPT 550

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
                     T+     + S + +    +  + +   E +     N  E   +    N  
Sbjct: 551 P---------TEPAKPSLFSRLLAKLKALFATEEKVEEKAKAQPRNPRERRNNRQRNNRQ 601

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
                    E ++        VK+ R
Sbjct: 602 ERKTQTQPDESKAPKVEKAEKVKQPR 627



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|308049099|ref|YP_003912665.1| RNAse E [Ferrimonas balearica DSM 9799]
 gi|307631289|gb|ADN75591.1| RNAse E [Ferrimonas balearica DSM 9799]
          Length = 1099

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 206/627 (32%), Positives = 315/627 (50%), Gaps = 9/627 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 155 GSPEDVPK-----KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                            +  I+EVIK  Q ++VQ+ KEERG KGAA+TT++SLAG Y VL
Sbjct: 70  IKEIAREYFADGAPMAGRPNIKEVIKEGQEVIVQVDKEERGTKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK+    L+VP GMG+I+RTAG  +   E+  D   L+
Sbjct: 130 MPNNPRAGGISRRIEGDERSE-LKDALSKLQVPQGMGLIVRTAGVGKAAEELADDLRVLL 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             WD +++ A +  AP L+++E N+I RAIRD    DI EI++   + + +AK+ + L+ 
Sbjct: 189 HHWDAIKQAADSRPAPILIHQESNVIVRAIRDYLRSDIGEILIDHPRIFEQAKEHISLVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P     ++QY+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL ++D+NS R+
Sbjct: 249 PDALSKLKQYQSEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTAVDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++++
Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMGPVRHQREVENRLRDAVRQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGLLEMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 369 DRARVQIGRISRFGLLEMSRQRLRPSLGESAAHLCPRCNGQGTIRGTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I     +DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTAQIEAQVPTDVAAFLLNEKRKAIRIIEQRHKVEVYVIPHPHMETPNYTVVRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +    + +    +A  Y+    E    D+ +L    +   E         E     
Sbjct: 489 KDDTISEASYSLVERPEATLYEPRKLERQQGDKPVLQGLSAPKAEAEVKAEKPAE-KAPA 547

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
             + +R+ +  P       G+++ + +    +  S +   E                   
Sbjct: 548 PAKPKRQPKAEPVA-AAKPGLLARIGAAIKGLFSSEEAEQEQPKEKKSERGGQRRQRGER 606

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715
                    +    +    S      K
Sbjct: 607 GERGERQDRNRRNRKRGERSEQDEQGK 633



 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2   KRMLINATQSEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYY--QIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y+    P + R  + +     Q     V  + 
Sbjct: 62  AERHGFLPIKEIAREYFADGAPMAGRPNIKEVIKEGQEVIVQVDKEE 108


>gi|90407029|ref|ZP_01215219.1| ribonuclease E [Psychromonas sp. CNPT3]
 gi|90311900|gb|EAS39995.1| ribonuclease E [Psychromonas sp. CNPT3]
          Length = 984

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 212/639 (33%), Positives = 312/639 (48%), Gaps = 21/639 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                 +       FK +  I+EVIK  Q +++QI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEISRNYFPNGYSFKGRPNIKEVIKEGQEVIIQIEKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    L++P GMG+I+RTAG  +T  E++ D   L+
Sbjct: 130 MPNNPRAGGISRRIEGDERTQ-LKEALSHLKLPNGMGLIVRTAGVGKTAEELEWDLNVLV 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E + +  AP L++ E N+I R+IRD   +DI EI++   K + +AK  ++++ 
Sbjct: 189 NHWHAIDEASKSKSAPFLIHRESNVIVRSIRDYLRRDIGEIVIDHAKTFEQAKKHIEMVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P Y   ++ Y+   P+F    +E Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDYIDRLKLYQGEIPLFTYYQVESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TR   IE+TA  TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +++ES+++
Sbjct: 309 TRGGDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPARHQREVENRMRESVRQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGL+EMSRQRIR S+ ES ++VC  C G G IR   S+AL+ILR +EE
Sbjct: 369 DRARIQLGRISRFGLMEMSRQRIRPSLGESASRVCPRCHGQGTIRDNESLALAILRLIEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             L+     I       V  YLLN+KR++I + E R    I ++    L    F I++  
Sbjct: 429 EGLKENTVQIQATVPVAVAAYLLNEKRSSIFKIEQRHNCEIFIIPDANLLTPHFEIKRTR 488

Query: 570 PVQALV-NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  N                  E   +DE +L           Q +  S E     
Sbjct: 489 NDNQTEINYDALQKQHQVYVPNVVKNEQQKEDEPILSGFSRPKNSPKQKHKNSTEKAVQS 548

Query: 629 RKRRRRRR--------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            +   +                   P T            +  N   +        +   
Sbjct: 549 TQSTEKPTSLLSKIFASIGALFSASPETAEPKVEEKPRPRNNNNRNRNRNRNTRTRNKND 608

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           N    ++      EN    +      +            
Sbjct: 609 NERSNDDVQKPSEENNSRRVQKPRDNDRIKKAPRKPQAP 647



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 1/110 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2   KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQAL-LKESNIAQTDSEAVADDVTHGD 111
            +RHGFLP  EI  +Y+   +S +    +KE      +     +    G+
Sbjct: 62  ADRHGFLPLKEISRNYFPNGYSFKGRPNIKEVIKEGQEVIIQIEKEERGN 111


>gi|332162114|ref|YP_004298691.1| ribonuclease E [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666344|gb|ADZ42988.1| ribonuclease E [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 1162

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +       + +     P   + SL        +  +  V 
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPPESAPAAANVK 547

Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                +      A              G+    +  +    +        +   +     
Sbjct: 548 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 607

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
              +G  +  D   P          N++ D   +      
Sbjct: 608 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 646



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|241763828|ref|ZP_04761873.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN]
 gi|241366872|gb|EER61286.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN]
          Length = 553

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 190/541 (35%), Positives = 289/541 (53%), Gaps = 6/541 (1%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +       P     Q  I EVIK  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISRSYFTPGVSPNQARINEVIKEGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  RT  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPNGMSIIARTAGIGRTAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           + +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP +
Sbjct: 191 NAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D   +F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA
Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ G IS FGL+EMSRQR++ ++ E ++  C  C G+G+IR   S AL ILR ++E  +
Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      +V  +LLN+KR  I + E +  V++ +V    L    + +E+     
Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVAVLMVPNKTLETPNYRLERLKHDD 490

Query: 573 -----ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                   +       +       ++ E   +   ++     ++   + +      +  +
Sbjct: 491 PRLDHIEASYKLAEEVEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPVAEARPEGAARPL 550

Query: 628 I 628
            
Sbjct: 551 R 551



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + E      +     +    G+
Sbjct: 62  EDRHGFLPFKEISRSYFTPGVSPNQARINEVIKEGQELLVQVEKEERGN 110


>gi|289668997|ref|ZP_06490072.1| ribonuclease E [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 725

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 210/612 (34%), Positives = 318/612 (51%), Gaps = 9/612 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  D  +       
Sbjct: 7   QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L++P  MGVI+RTAG  R   E++ D +YL++
Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  A  L+Y+E  LI RA+RD    D+ EI+V   + Y +A++FMK +MP
Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE KL+ +LK D
Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMTSSKHQREVENKLQNALKYD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+EMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 485

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +   ++G              +       +A L IP   ++  I+ +  +         
Sbjct: 486 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREEAPAP 541

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                      T    A V   V  ++ +      +   P         + G +   E  
Sbjct: 542 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRNERG 601

Query: 691 DVSIPPVSTPEM 702
           +         + 
Sbjct: 602 ERGGQRRDGRDA 613



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 62/107 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  DY+Q      ++ ++E      +     D    G+
Sbjct: 61  RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107


>gi|213580588|ref|ZP_03362414.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 536

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 187/518 (36%), Positives = 284/518 (54%), Gaps = 9/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606
             +      + +     +A +     E   +     P 
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPA 528



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|238749678|ref|ZP_04611183.1| Ribonuclease E [Yersinia rohdei ATCC 43380]
 gi|238712333|gb|EEQ04546.1| Ribonuclease E [Yersinia rohdei ATCC 43380]
          Length = 1140

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 200/666 (30%), Positives = 313/666 (46%), Gaps = 47/666 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +       + +     P   + SL        +  +  V 
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATLERKRPEQPALATFSLPTEVPPESAPAAETVK 547

Query: 629 RKRRRRRRRRR------------------------------------PATDHHDAGVVSD 652
              R +                                           T+  D      
Sbjct: 548 PVARPQAVASTTATTTTEQPGFFSRLFSGLKGLFGESAAAEVKPVEVEKTETTDTRRNDR 607

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--GFTENYDVSIPPVSTPEMESSNSSSD 710
            +  +            P +  ++N  +NG       +N             E    +  
Sbjct: 608 RNPRRQNNGRKERGERTPREGRDNNTRDNGTRDNANRDNSVRDNANRDNTNREDQRRNKR 667

Query: 711 PIVKKT 716
           P  + T
Sbjct: 668 PTQQAT 673



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|251789226|ref|YP_003003947.1| ribonuclease, Rne/Rng family [Dickeya zeae Ech1591]
 gi|247537847|gb|ACT06468.1| ribonuclease, Rne/Rng family [Dickeya zeae Ech1591]
          Length = 1058

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 200/649 (30%), Positives = 311/649 (47%), Gaps = 40/649 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGMETPHYSVLRIR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSE------ 622
             +      + +     A S     E V +      P   S ++ DI  +          
Sbjct: 491 KGEEKQTLSYMLPQLLDAESQQVTEEQVAERRAPEQPALVSFTMPDIPPDEAKSTVVTAT 550

Query: 623 -------------------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
                                     ++    K ++     +  +D  +       +  Q
Sbjct: 551 PPAAAKPAVPERGLFGRFIGALKGIFASSDDGKDQQPADTAKAESDEQEQRPERRNNRRQ 610

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
           +   D      EP +       +       +  +  +   S  +    +
Sbjct: 611 SGRRDRPRDNREPRERDEQRRNKRVQQQNADVENAPVTDTSVQDKAVRD 659



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|253998974|ref|YP_003051037.1| Rne/Rng family ribonuclease [Methylovorus sp. SIP3-4]
 gi|253985653|gb|ACT50510.1| ribonuclease, Rne/Rng family [Methylovorus sp. SIP3-4]
          Length = 913

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 214/646 (33%), Positives = 323/646 (50%), Gaps = 18/646 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            ++    A+ D     D+ I +    +  + I        E S+ +A  +  ++      
Sbjct: 10  QSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  +          +  IQ+V+K  Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVARSYFQNDSDGRARIQDVLKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I        L+++   LEVP GM +I RTAG  R   E++ D  YL++L
Sbjct: 130 NNPRGGGVSRRIEGEDR-NELRDLMAQLEVPNGMSIIARTAGIGRNIEELQWDLNYLLQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   +     P L+Y+EG+L+ RAIRD +  DI EI++     + +A  FM  +MP 
Sbjct: 189 WTAIEGASTMQSGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQFMNHVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V+ Y D  P+F R  IE Q+++    EV LPS G ++I+ TEALVS+DVNSGRST+
Sbjct: 249 NVSRVKLYRDEIPLFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVDVNSGRSTK 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE TA  TNLEAA+E+ARQLRLRDL GL+V+DFIDME ++N R VE +L+++L  DR
Sbjct: 309 GSDIEHTAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLRDALHHDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ G IS FGLLE+SRQR+R S+ ES    C  C G G+IR   S AL ILR  +E  
Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHILRITQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  I V    +   +LLN+KRA I + E R GV + ++  I +    + I +    
Sbjct: 429 MKENSAIIQVQLPVEAATFLLNEKRAEIHKIEQRSGVQVVLIPNIHMETPNYNISRIRSD 488

Query: 572 QALVNTGHKVGSDSQAPSY-DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                T        + P+  + N     + +A+      + +       ++ E    +  
Sbjct: 489 DVNEETSRASYQMVELPTEGEYNPAAQQEVKAVRAEAAVKGITPASPAPIATEKAVEVPA 548

Query: 631 RR----RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL-------- 678
                 R +      T+  +  V  + +  +N  + +       +    +          
Sbjct: 549 APSLFGRFKNWLSKITETKEEVVAPETTKQRNDNNRNNRNQPRNARNNRNGRNGERGERP 608

Query: 679 -LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E  A    E  +        P  E S        ++ R  + R+
Sbjct: 609 AAERNAERGGERNNERAERGERPANERSERQERGNRQEPRQQEGRE 654



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY   +TR+EPSL+AAFV+YG
Sbjct: 2   KRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y+Q   SD +A +++      +     D    G+
Sbjct: 62  TDRHGFLPFKEVARSYFQN-DSDGRARIQDVLKEGQELIVQVDKDERGN 109


>gi|71275231|ref|ZP_00651518.1| Ribonuclease E and G [Xylella fastidiosa Dixon]
 gi|71899548|ref|ZP_00681704.1| Ribonuclease E and G [Xylella fastidiosa Ann-1]
 gi|170731226|ref|YP_001776659.1| ribonuclease E [Xylella fastidiosa M12]
 gi|71164040|gb|EAO13755.1| Ribonuclease E and G [Xylella fastidiosa Dixon]
 gi|71730677|gb|EAO32752.1| Ribonuclease E and G [Xylella fastidiosa Ann-1]
 gi|167966019|gb|ACA13029.1| ribonuclease E [Xylella fastidiosa M12]
          Length = 1132

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 210/601 (34%), Positives = 322/601 (53%), Gaps = 16/601 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  +  D+ I      ++ + I        E S+ +A  D  ++      
Sbjct: 10  QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISKDYFQASLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LKE    L +P  MGVI+RTAG  R   E++ D ++L+ 
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  + E AL+  AP L+Y+E  LI RA+RD +  DI EI+V  E+ Y++A +FM+ +MP
Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHEFMRHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y+D  P+F R  IE Q++  ++  V LPS G ++++QTEAL +IDVNS R+T
Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM   K+ R +E +L+  LK D
Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+  IS FGLLEMSRQR+R S+ ES+  VC YC G G +RS  S++LSI+R VEE+
Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V T  ++  YLLN+KR  I E E R    I ++   +L    + + +   
Sbjct: 429 AMKENTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHAPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629
            +    TG      +       +       ++ L IP + +++ I        +      
Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSITPPQLAPTQEKIPTI 544

Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           + +    R  P  +           +  +    Q   + S    ++ +   N    E   
Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERNR 604

Query: 684 H 684
            
Sbjct: 605 R 605



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  TDRHGFLPLKEISKDYFQASLDHHKAGIRELLREGQEIVVQVDKEERGN 110


>gi|261492265|ref|ZP_05988828.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261312044|gb|EEY13184.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 491

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 137/566 (24%), Positives = 233/566 (41%), Gaps = 82/566 (14%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           + ++L++ +   ETRV ++ +  ++EL  E E K+ I GNIY  +VTRV P +Q+AFVD 
Sbjct: 3   STELLVNVT-PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDI 61

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G  +  FL   +I               + E+   Q   + +++ V  G   +       
Sbjct: 62  GLEKAAFLHASDIVSH---------TECVDENEKKQFLVKDISELVREGQDIVVQVVKDP 112

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
                A  + +    S         S+V   +    E+   + K                
Sbjct: 113 IGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLK---------------- 156

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK-GETISRKITNPVDRKNLKEIARGLE 240
                                    S++ P   + G  I R        ++LK+    L+
Sbjct: 157 -------------------------SLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLK 191

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                             V E      A  ++Y E  L +R +R
Sbjct: 192 RLW-----------------------------RKVLERKGKYSAKSMLYGELALAQRVLR 222

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D     I+ + +  +  Y + ++F+   MP     V  Y     +F   G+E  +     
Sbjct: 223 DFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALD 282

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY+II QTEA+ +ID+N+G       +  T   TN+EA + IA QL+LR+L 
Sbjct: 283 KRVDLKSGGYLIIEQTEAMTTIDINTGTFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLG 342

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+E+++   V + L+E+LK DR +  V   +  GL+EM+R+R R S+    
Sbjct: 343 GIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERIL 402

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-I 539
              C  C+G G +++  +V   I+R +      +   NI V+   DV  YL+N++    +
Sbjct: 403 CCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALL 462

Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565
            E +A  G  I + +      + F +
Sbjct: 463 AELQAFIGKKIEIKLEPYYHQEQFDV 488


>gi|91976914|ref|YP_569573.1| ribonuclease [Rhodopseudomonas palustris BisB5]
 gi|91683370|gb|ABE39672.1| RNAse E [Rhodopseudomonas palustris BisB5]
          Length = 1043

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 293/602 (48%), Positives = 391/602 (64%), Gaps = 7/602 (1%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
            E           A+           D  ++  A      +  +E+   +  + V S   
Sbjct: 246 AEDAPFPIAETVSAEHHDDEHDHDAGDDLIDSDADSEGDDEADDEDDDEAEEDIVESVGG 305

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           D       +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLM
Sbjct: 306 DDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLM 365

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PNT++G  ISRKIT+  DR  LKE+ + L+VP GMG+ILRTAGA+RTK EIKRDFEYL+R
Sbjct: 366 PNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIR 425

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM +LMP
Sbjct: 426 MWETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEPGYQEARDFMHMLMP 485

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           S  R V+ Y D  P+F R G+E QLD++    V L S GY+++NQTEALVSIDVNSGRST
Sbjct: 486 SNVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVLNQTEALVSIDVNSGRST 545

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           REH IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++D
Sbjct: 546 REHHIEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQD 605

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE 
Sbjct: 606 RARIQVGRISHFGLLEMSRQRIRASVLESSTEPCAHCGGSGHVRSVSSVALQLLRGLEEI 665

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGS 569
           L++   HN+IV T +DV LY+LNQKR  + + E  F V+++V+    +   + F I++G 
Sbjct: 666 LMKGATHNLIVRTRNDVALYVLNQKRGHLRDLETGFKVTLSVMADPTVTGQQSFVIDRGE 725

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE------DIQDNIVSEE 623
            V  L      + +   A            DE+     + E+ E      +   + +  E
Sbjct: 726 QVHTLEAAKALLAAQVAAAPAQPEELPYEDDESYEFEAEIETDETVGLTGESAGDSIEAE 785

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             G  RKR+RRRRRR    +  DAG   +      V + +     + S+    +    G 
Sbjct: 786 GEGDARKRKRRRRRRPRTGEARDAGAPREDGEAALVAEGAEAAAEDDSEDGEDSAEGEGE 845

Query: 684 HG 685
             
Sbjct: 846 AR 847



 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 74/162 (45%), Positives = 96/162 (59%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E  ++  +    +    H  
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEQRSTRRRSRHRSHRR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162
                                ++    +           + +
Sbjct: 121 RGNGERVQSEIVDASADQPHVDSADHHHDGQAHPDHERPMHE 162


>gi|33591687|ref|NP_879331.1| ribonuclease E [Bordetella pertussis Tohama I]
 gi|33571330|emb|CAE44805.1| ribonuclease E [Bordetella pertussis Tohama I]
 gi|332381082|gb|AEE65929.1| ribonuclease E [Bordetella pertussis CS]
          Length = 1042

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 202/583 (34%), Positives = 304/583 (52%), Gaps = 18/583 (3%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR++     ++ L++    L+VP GM +I RTAG  R   E++ D  YL++L
Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQL 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A ++ AP L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM +++P 
Sbjct: 190 WTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVIPD 249

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             + V++Y D  P+F R  IE Q+++ +   V LPS G V+I+ TEALV++DVNS RSTR
Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTR 309

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L  DR
Sbjct: 310 GADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G IR   S AL +LR ++E  
Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA I + EAR  V++ ++    L     +IE+    
Sbjct: 430 MKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
              +         ++AP+ D   +    +    P    + +   Q   VS  +       
Sbjct: 490 DPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAA 549

Query: 632 RRRRR----------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDIT 674
               +                   PA     +      ++      D  +   E      
Sbjct: 550 AAAAQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQNRRGERHGSDR 609

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           N +          E+ D           E      +   K+ R
Sbjct: 610 NRHRRNEPRGEHAESGDARHHVRGGRRQEERGERGERGQKEAR 652



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110


>gi|33602744|ref|NP_890304.1| ribonuclease E [Bordetella bronchiseptica RB50]
 gi|33577186|emb|CAE35743.1| ribonuclease E [Bordetella bronchiseptica RB50]
          Length = 1046

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 204/583 (34%), Positives = 304/583 (52%), Gaps = 18/583 (3%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR++     ++ L++    L+VP GM +I RTAG  R   E++ D  YL++L
Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQL 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A ++ AP L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM ++MP 
Sbjct: 190 WTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             + V++Y D  P+F R  IE Q+++ +   V LPS G V+I+ TEALV++DVNS RSTR
Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTR 309

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L  DR
Sbjct: 310 GADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G IR   S AL +LR ++E  
Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA I + EAR  V++ ++    L     +IE+    
Sbjct: 430 MKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
              +         ++AP+ D   +    +    P    + +   Q   VS  +       
Sbjct: 490 DPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAA 549

Query: 632 RRRRR----------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDIT 674
               +                   PA     +      ++      D  D   E      
Sbjct: 550 AAATQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDRRGERHGSDR 609

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           N +          E+ D           E      +   K+ R
Sbjct: 610 NRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEAR 652



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110


>gi|332284962|ref|YP_004416873.1| ribonuclease E [Pusillimonas sp. T7-7]
 gi|330428915|gb|AEC20249.1| ribonuclease E [Pusillimonas sp. T7-7]
          Length = 962

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 202/583 (34%), Positives = 297/583 (50%), Gaps = 44/583 (7%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   IQE +   Q L++Q+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR++  
Sbjct: 85  RTARIQEALTEGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    L+ P+GM +I RTAG  R+  E++ D  YL++LW  +   A  + AP
Sbjct: 145 EDRQE-LREAMDQLDTPSGMSIIARTAGIGRSVEELQWDLSYLLQLWTAIDGAARENAAP 203

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L+ RAIRD Y  +I EI++  +  + +A  FM ++MP   + V+ Y D  P+
Sbjct: 204 ILIYLESSLVIRAIRDYYSPEIGEILIDTDDIHEQATAFMSVVMPDTVQRVKMYRDDIPL 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++ +   V LPS G V+I+ TEALV+IDVNS RSTR   IE+TA++TNLE
Sbjct: 264 FSRFQIEHQIETAYSRTVQLPSGGSVVIDHTEALVAIDVNSARSTRGSDIEETAMRTNLE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+E+ARQLRLRDL GLIV+DFIDMEE KN R+VE++L+++L  DRARVQ+G IS FGL+
Sbjct: 324 AADEVARQLRLRDLGGLIVIDFIDMEEGKNQRAVEQRLRDALHFDRARVQMGKISRFGLM 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R ++ E +   C  C G G +R   S AL +LR ++E  ++     +      
Sbjct: 384 ELSRQRLRPALNEGSHITCPRCNGTGVVRDAESSALHVLRLLQEEAMKEGTAALHAQVPV 443

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV  +LLN+KRA I + EAR  V++ ++    L     +IE+       +          
Sbjct: 444 DVATFLLNEKRADISKIEARLKVNLILIPNKNLETPHHHIERLRHDDPRLEESKSSIELV 503

Query: 586 QAPSYDKNIECVWQDEALLPIPKS------------------------------------ 609
             P            E     P++                                    
Sbjct: 504 SQPEEQLTWAASKDQETKSSRPEALVKGITPAQPAPISAKTSSASTTAAQGPGLLKRLIN 563

Query: 610 -------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                   ++++      S +  G   K  R   RR  +    +            V   
Sbjct: 564 WLTGTNTPTVKEEPKTETSSKPQGGRGKNSRHGERRERSQGDRNNRNRRGERRHDAVEGK 623

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
           S +              E+ +   +     +    ST   E S
Sbjct: 624 SDETQAPRGRRQQSQQHEDSSPAGSNTAARAQNGESTETAEGS 666



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++E+     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSYFKEGVDVRTARIQEALTEGQELIIQVEKEERGN 110


>gi|168822630|ref|ZP_02834630.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341036|gb|EDZ27800.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320086375|emb|CBY96148.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 1058

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 194/600 (32%), Positives = 304/600 (50%), Gaps = 16/600 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684
                 ++    AT     G+ S   +    +    +        P         ++   
Sbjct: 551 ---ATAKKDNVAATQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254360790|ref|ZP_04976938.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Mannheimia haemolytica PHL213]
 gi|261494486|ref|ZP_05990972.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153091360|gb|EDN73334.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Mannheimia haemolytica PHL213]
 gi|261309870|gb|EEY11087.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 491

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 137/566 (24%), Positives = 233/566 (41%), Gaps = 82/566 (14%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           + ++L++ +   ETRV ++ +  ++EL  E E K+ I GNIY  +VTRV P +Q+AFVD 
Sbjct: 3   STELLVNVT-PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDI 61

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G  +  FL   +I               + E+   Q   + +++ V  G   +       
Sbjct: 62  GLEKAAFLHASDIVSH---------TECVDENEKKQFLVKDISELVREGQDIVVQVVKDP 112

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
                A  + +    S         S+V   +    E+   + K                
Sbjct: 113 IGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLK---------------- 156

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK-GETISRKITNPVDRKNLKEIARGLE 240
                                    S++ P   + G  I R        ++LK+    L+
Sbjct: 157 -------------------------SLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLK 191

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                             V E      A  ++Y E  L +R +R
Sbjct: 192 RLW-----------------------------RKVLERKGKYSAKSMLYGELALAQRVLR 222

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D     I+ + +  +  Y + ++F+   MP     V  Y     +F   G+E  +     
Sbjct: 223 DFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALD 282

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY+II QTEA+ +ID+N+G       +  T   TN+EA + IA QL+LR+L 
Sbjct: 283 KRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLG 342

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+E+++   V + L+E+LK DR +  V   +  GL+EM+R+R R S+    
Sbjct: 343 GIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERIL 402

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-I 539
              C  C+G G +++  +V   I+R +      +   NI V+   DV  YL+N++    +
Sbjct: 403 CCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALL 462

Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565
            E +A  G  I + +      + F +
Sbjct: 463 AELQAFIGKKIEIKLEPYYHQEQFDV 488


>gi|123441933|ref|YP_001005916.1| ribonuclease E [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088894|emb|CAL11701.1| ribonuclease E [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 1176

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +       + +     P   + SL        +  +  V 
Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPPESAPAAANVK 550

Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                +      A              G+    +  +    +        +   +     
Sbjct: 551 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 610

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
              +G  +  D   P          N++ D   +      
Sbjct: 611 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 649



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|91793654|ref|YP_563305.1| ribonuclease [Shewanella denitrificans OS217]
 gi|91715656|gb|ABE55582.1| RNAse E [Shewanella denitrificans OS217]
          Length = 1102

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 205/637 (32%), Positives = 314/637 (49%), Gaps = 17/637 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV++  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVQEGQQVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVP GMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPNGMGLIVRTAGVGKEANELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             WD ++E + +  AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 189 HHWDAIQEASQSQNAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIGLVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERVKLYESEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G +RS  S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTVRSTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R GV + ++    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEERHGVEVYIIPDEHMKTPDYRVVRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +  + +K      +  Y+    E     +  L    +           +       
Sbjct: 489 TDDEMTESSYKRVEAPLSKLYEPRKLERAAAPQPALKGFAAPQKAPDAPVKATPVVQSTQ 548

Query: 629 RKRRRR----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                R             +            S+     N      D   +  +    + 
Sbjct: 549 PGLVTRIIAGISALFSSPSKSAEPKAETKSTASESRPANNTRPRRSDGRSDSRNDNRRSR 608

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            ++ +    +            + +   +  D   K+
Sbjct: 609 NDSDSRNRNDADKNKDTRGRNKKTDKERNVRDADDKR 645



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 62 ADRHGFLPLKEIAREYF 78



 Score = 38.0 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 40/143 (27%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                 +V S+S   +   ++       +     + +   D+      +   G   +RR 
Sbjct: 773 RKEKAEQVTSESSDEASAPSVATAEIPASDAGTVEPKQAVDVNAEQDDDAKEGRDGQRRS 832

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           RR  R             D +S   V     ++  + +D  N    +       +    +
Sbjct: 833 RRSPRHLRAAGQRRRRDEDDTSQGAVFSSVDELEKQLNDEQNAIAAQKLNGEAQQAAPSA 892

Query: 694 IPPVSTPEMESSNSSSDPIVKKT 716
           +         ++   +D     T
Sbjct: 893 VEQAEVSNAANNIEINDKAEAAT 915


>gi|299067007|emb|CBJ38202.1| Ribonuclease E [Ralstonia solanacearum CMR15]
          Length = 1029

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 198/542 (36%), Positives = 295/542 (54%), Gaps = 5/542 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V   A+ + AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP  
Sbjct: 191 KAVDGAAVENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALV++DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAALHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             ++        ++  + +   +  +        P+ E+             +    +R 
Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKETVKPRQEAAVKGITPEQPAPVSVPRAERP 550

Query: 633 RR 634
            R
Sbjct: 551 AR 552



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGN 110


>gi|207725238|ref|YP_002255634.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum MolK2]
 gi|206590472|emb|CAQ37434.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum MolK2]
          Length = 1013

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 198/539 (36%), Positives = 295/539 (54%), Gaps = 5/539 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V   A+++ AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP  
Sbjct: 191 KAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALV++DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             ++        ++  + +   +  +        P+ E+             +    +R
Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPAPVSVPRAER 549



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110


>gi|110598301|ref|ZP_01386576.1| ribonuclease, Rne/Rng family [Chlorobium ferrooxidans DSM 13031]
 gi|110340109|gb|EAT58609.1| ribonuclease, Rne/Rng family [Chlorobium ferrooxidans DSM 13031]
          Length = 535

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 151/537 (28%), Positives = 264/537 (49%), Gaps = 23/537 (4%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQAL 89
            E    ++  G+IYL +V +V   L+AAFVD G    GFL F ++          D +AL
Sbjct: 3   IERPESRRSIGDIYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVG-----TTSEDYRAL 57

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
           +++ +       A   D        P          +   ++   +              
Sbjct: 58  IEDDDDDDAVVGAEDADGDDSLNAAPVQVQPAADQSVKASARSGGKRPSGDEQEKAEK-- 115

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                        +      I   +K    +LVQ++KE   +KG+ +T+ +++AGR+ VL
Sbjct: 116 -------------RQSYTQMIAGKLKPNDSILVQVIKEPISSKGSRLTSDITIAGRFMVL 162

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           +P       +SR++    +R  LK++ R +    G G I+RT    + +  +K+D E L+
Sbjct: 163 LPFGGGQVAVSRRVVVRKERSRLKKLVRSMLPE-GFGAIIRTVAEDQEETLLKQDLEKLL 221

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E   ++  P L+++E  +I   +RD    D++EI+ +    ++E  ++++   
Sbjct: 222 AKWTQIEEKLQDAAPPQLIFKEDTIISSVLRDSLTSDVTEIVANSSVIHKETLNYIQWAA 281

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P   + V  Y+   P+F   GI   ++S+   +V L S GY+II  TEA+V +DVNSGR 
Sbjct: 282 PEMVKNVSLYQGKLPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRY 341

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             +   E+ +L+TNLEAA EI RQLRLRD+ G+IVVDFIDM ++KN + V   +K  L+ 
Sbjct: 342 AAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMLDQKNAKKVYDSMKTELRN 401

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRA+  +  +S+FG+++++R+RIR S+++     C  C G G ++++ +    I R + +
Sbjct: 402 DRAKSNILPMSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTINQIERWLRK 461

Query: 510 YLLQY--TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           Y LQ+      + ++    VV  L N    T +++  +  + + V     L    F 
Sbjct: 462 YALQHPLNFQQLDLYVSPTVVEPLQNSDLKTELKWFLQHLLFVQVKPDESLRSDDFR 518


>gi|242239019|ref|YP_002987200.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech703]
 gi|242131076|gb|ACS85378.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech703]
          Length = 1060

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 204/634 (32%), Positives = 313/634 (49%), Gaps = 15/634 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALQLPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMETPHYSVLRIR 490

Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLP---IPKSESLEDIQDNIVSE 622
             +      + +     S++Q  S +   E    ++  L    IP    +E  Q    + 
Sbjct: 491 KGEEKQALSYMLPQLLESETQQTSDEPAPERKMPEQPALASFTIPDIPPVESQQPVQETS 550

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            ST      R     R      +  G  ++       I        +  +  N     N 
Sbjct: 551 NSTTSTGTERPGILGRMIGALKNLFGGAAEADVKPEEIAAVHTEEEQKQERRNGRRQSNR 610

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                 +             + +  ++ P   +T
Sbjct: 611 RDRGQRDNREPRERDEQRRAKRAQQAAAPEPTET 644



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|75675912|ref|YP_318333.1| ribonuclease E and G [Nitrobacter winogradskyi Nb-255]
 gi|74420782|gb|ABA04981.1| RNAse E [Nitrobacter winogradskyi Nb-255]
          Length = 1059

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 300/613 (48%), Positives = 395/613 (64%), Gaps = 9/613 (1%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEE--VAPIANFSQETEEESIISANNDVVSNV 149
           E  I+ + +E  A  V        ++   EE     +    +  ++         V S  
Sbjct: 299 EPAISSSPNEDHALGVHASGDHDHDEPHAEEFHGDEVRVEDRADDDGDDDEEEEQVESVG 358

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
            D       +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VL
Sbjct: 359 GDDALEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVL 418

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKIT+  DR  LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+
Sbjct: 419 MPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKPEIKRDFEYLI 478

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           R+W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI+V+GE GY EA+ FMK+LM
Sbjct: 479 RMWETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYSKEIDEILVAGEAGYHEARGFMKMLM 538

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS AR V+QY D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGRS
Sbjct: 539 PSNARAVKQYRDCQPLFSRMGVESQLDAMFLPTVQLRSGGYIVINQTEALVSIDVNSGRS 598

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH I+DTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK++NR+VE+KL E L+ 
Sbjct: 599 TREHHIKDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRSNRAVERKLSECLRH 658

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+QVG IS+FGLLEMSRQRIR+S+LES+T+ C  C G+G++RS  SVAL +LRS+EE
Sbjct: 659 DRARIQVGRISHFGLLEMSRQRIRASMLESSTEPCPQCGGSGHVRSVPSVALQLLRSLEE 718

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKG 568
            L++   HN+IV T  +V LY+LNQKR  +   E  F V ++VV    +   + F I++G
Sbjct: 719 VLMKGATHNLIVRTRINVALYVLNQKREHLRALEHSFRVGLSVVADPAIAGQQSFVIDRG 778

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             V  L     K    +Q  +Y    E V  DE  L        +D +  +  +      
Sbjct: 779 EQVHTL--EAAKALLATQLVTYPPQAEDVQDDEPTLDTETETEADDAEVRVDEQAGGETE 836

Query: 629 RK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +RRRRRRR  +++ +D+ V   V    +V   +             N  E+ +   
Sbjct: 837 GDGRKRRRRRRRERSSETNDSQVSQAVEVPDSVQIAAEFAAARFMIDDVENEGEDSSA-- 894

Query: 687 TENYDVSIPPVST 699
            E+   +  P   
Sbjct: 895 QESAAPADQPADE 907



 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/177 (44%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA+H EETRVVV+R NRVEE DFES  +KQ++GNIYLAKVTRVEPSLQAAF++Y
Sbjct: 26  PNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 85

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F EIHPDYYQIP +DRQAL++    A  ++E  ++D +    +   +    
Sbjct: 86  GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEDRSSRRRSRHRNARRR 145

Query: 122 EVAPIANFS-QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177
           +       +  E  E  +  A+                       +Q+ +Q+  +  
Sbjct: 146 DHGERVQSAVVENGEHQVAGADGTQSDPSHSDPSHDEFAAGDHLGQQHDVQDHDQPN 202



 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 15/187 (8%)

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA-------L 603
            +V I  E A   F I+         +         Q     +      +           
Sbjct: 868  SVQIAAEFAAARFMIDDVENEGEDSSAQESAAPADQPADERRPRRRGRRGGRRRRGTNGA 927

Query: 604  LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
             P+  +    ++     + ++   +         R    +           S  +  +  
Sbjct: 928  NPVDSASDELNVTSVSEAVDAVADLDSVSLAPEARSEPAESETQPQQQSEESASSPAETG 987

Query: 664  FDMYMEPSDIT-NHNLLENGAHGFTENYDVSIP------PVSTPEMESSNSSSDPI-VKK 715
                 EP       + +       ++    S+P        STPE +    +SD    ++
Sbjct: 988  NGTVPEPEKAVCRRSTVREKVSFTSQEEPPSVPVVQGEPEESTPEAQQPPQASDETRPRR 1047

Query: 716  TRWWKRR 722
              WW RR
Sbjct: 1048 AGWWSRR 1054


>gi|240948236|ref|ZP_04752622.1| ribonuclease E [Actinobacillus minor NM305]
 gi|240297275|gb|EER47816.1| ribonuclease E [Actinobacillus minor NM305]
          Length = 973

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 203/626 (32%), Positives = 324/626 (51%), Gaps = 15/626 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSDYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ ++  A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKNAAQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ +C  C+G G +R   S+ALSILR VEE  
Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLVEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  +      +V  YLLN+KR  I   E R  V++ VV    +    F + +    
Sbjct: 431 IKENSAQVHAIVPVEVASYLLNEKRKAISGIEKRHDVNVVVVPSESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           + +    + +         +++      +     + ++E +  ++  + S E        
Sbjct: 491 EIVPTLSYDLAKHYHEREEEEHSFHHHVNSDEALVSRNEPVITVETVLNSSELNLQPAPT 550

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
                      +     + S + +    +  + +   E +     N  E   +    N  
Sbjct: 551 PA---------EPEKPSLFSRLLAKLKALFATEEKVEEKTKAKPRNSRERRNNRQRNNRQ 601

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
                    E +++       VK+ R
Sbjct: 602 ERKAQTQQDESKATKVEKAEKVKQPR 627



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|171317150|ref|ZP_02906352.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
 gi|171097717|gb|EDT42547.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
          Length = 1050

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 195/539 (36%), Positives = 295/539 (54%), Gaps = 7/539 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             A ++        ++  + +   E  +        PK E+                 R
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPGAAPQR 549



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|238783755|ref|ZP_04627774.1| Ribonuclease E [Yersinia bercovieri ATCC 43970]
 gi|238715306|gb|EEQ07299.1| Ribonuclease E [Yersinia bercovieri ATCC 43970]
          Length = 1160

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 197/666 (29%), Positives = 317/666 (47%), Gaps = 41/666 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +        +  +    + +     P   + SL        +  +    
Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPQEEATIERKRPEQPALATFSLPTEVPPESTPAAASAK 547

Query: 629 RKRRRR--------------------------------RRRRRPATDHHDAGVVSDVSSI 656
                +                                +      T+  +       +  
Sbjct: 548 PTAAPQVAATTTTEQPGFFSRLFTGLKGIFATSAEAEVKPVEVEKTEASETRRNDRRNPR 607

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +            P +  ++   +N         + +    S       N+  D + ++ 
Sbjct: 608 RQNSGRKDRGDRTPREGRDNASRDNNGRDNANRDNSARDSNSRDNNSRDNNGRDNVNREG 667

Query: 717 RWWKRR 722
           R  +RR
Sbjct: 668 RDDQRR 673



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|90417706|ref|ZP_01225618.1| ribonuclease, Rne/Rng domain protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337378|gb|EAS51029.1| ribonuclease, Rne/Rng domain protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1014

 Score =  313 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 289/604 (47%), Positives = 373/604 (61%), Gaps = 6/604 (0%)

Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKK 163
            D+    D +                S + E       + ++     +           +
Sbjct: 247 EDEDNGSDRSSRGRRGGRGRRGRTRASGDDENNGDEDGDEEIDQIGSEDAMEEVPVRQAR 306

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
            +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKI
Sbjct: 307 QRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKI 366

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
           TN  DRK LK++ R L+VP GMG+ILRTAGA+RTK E+KRD+EYLMRLW+ VR + L+S+
Sbjct: 367 TNAADRKRLKDVVRELDVPRGMGIILRTAGANRTKPEVKRDYEYLMRLWETVRTVTLSSI 426

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP LVYEEG+LIKR+IRDLY KDI +I+V+GE GYREAKDFM++LMPS A++V+ Y DP 
Sbjct: 427 APALVYEEGSLIKRSIRDLYNKDIDQILVAGETGYREAKDFMRMLMPSQAKVVQPYRDPT 486

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           PIF R GIE QLD + Q  VTL S GY+IINQTEALV+IDVNSGRST+EH IEDTA QTN
Sbjct: 487 PIFVRQGIESQLDKMVQPHVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEDTAYQTN 546

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           +EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VEKK+KE LK DRAR+QVG+IS+FG
Sbjct: 547 MEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVEKKIKECLKSDRARIQVGSISHFG 606

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           LLEMSRQRIR+SVLEST + C  C+G G+IRS SS AL +LR++EE+L ++  H++IV  
Sbjct: 607 LLEMSRQRIRASVLESTMQTCPVCEGTGHIRSSSSSALHVLRTIEEHLQKHADHDLIVKV 666

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
            +   LY+LN+KR  I E E   G+ I +        +   I  G+              
Sbjct: 667 PTSTALYVLNEKRQRIEELEHHHGLRIILEADDSAGHQAITIAHGAEAT----KPEITVD 722

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
             Q  +   +       +       ++ L+ I +   + E  G     R    R      
Sbjct: 723 SGQPDALAASDALDDAADEEAARRSADELDRIAEEKPAAEDKGRA--ERAEEDRNGSDNS 780

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
                        ++  +D      +  D  +     +   G  E  D +     +    
Sbjct: 781 EGGGRRRRRRRRKRSGDEDETVADGQSRDDRSDQDNGDDRDGDAEGDDETDGAHRSTSRT 840

Query: 704 SSNS 707
             +S
Sbjct: 841 DDDS 844



 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/160 (51%), Positives = 97/160 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASH EETRVVV+R +RVEE DFESEHKKQ+KGNIYLAKVTRVEPSLQAAFV+
Sbjct: 66  MANKMLIDASHPEETRVVVVRGSRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFVE 125

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++E      + E   +             S 
Sbjct: 126 YGGNRHGFLAFSEIHPDYYQIPKADRQALIEEDLQRAMEEEEADEPKPTRSRRGSRSKSA 185

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160
                  +   E +E       +    +    +       
Sbjct: 186 AHSDETVSEKAEIDENGNEVGADAAQGDAHGDETEIHATE 225



 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 17/156 (10%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                         +    P +      +    A  P P +E           +  +    
Sbjct: 870  ESGQQSGDVAADQAPDAQPMHATATTVMSDQVAATPAPVAEDAPVASPAEPVDAQS---- 925

Query: 630  KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                       A D+ D  V ++ +      +        P +       E       ++
Sbjct: 926  ----------EAADNADTAVAAEPAMPALAAEPVATNAPAPVEAQPAAAEETAGAAANDD 975

Query: 690  YDVSIPPVSTPEMESSNSSSD---PIVKKTRWWKRR 722
              V+  P       S+++ +D      ++T WW RR
Sbjct: 976  TPVAQEPSDPVVTSSTSNDADAKPEKPRRTGWWARR 1011


>gi|254503804|ref|ZP_05115955.1| ribonuclease, Rne/Rng family protein [Labrenzia alexandrii DFL-11]
 gi|222439875|gb|EEE46554.1| ribonuclease, Rne/Rng family protein [Labrenzia alexandrii DFL-11]
          Length = 923

 Score =  313 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 295/630 (46%), Positives = 390/630 (61%), Gaps = 5/630 (0%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
           SD +   + +  AQ             +       +       ++    + ++   + ++
Sbjct: 171 SDGEEAAENTADAQAADADAESPSDENEDDAKPARARRRRRRKSDVEAASNDDEGDNGDD 230

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
           +V S   +       +     ++QY IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLA
Sbjct: 231 EVESVGAEDALEEVPERRAPMRKQYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLA 290

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           GRYSVLMPNT++G  ISRKIT P DRK LK+IA  L+VP GMGVILRTAGASRTK EIKR
Sbjct: 291 GRYSVLMPNTARGGGISRKITQPTDRKRLKKIASELDVPEGMGVILRTAGASRTKAEIKR 350

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           DFEYLMRLW+NVREL L S AP LVYEEG+LIKR+IRDLY KDI E+ V+G++GYREAKD
Sbjct: 351 DFEYLMRLWENVRELTLKSSAPSLVYEEGSLIKRSIRDLYNKDIDEVSVAGDEGYREAKD 410

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           FM++LMPS+A+ V+ Y DP P+F R G+E QLD++    VTL S GY++INQTEALVSID
Sbjct: 411 FMRMLMPSHAKNVQPYRDPSPLFIRYGVEPQLDAMFSPHVTLKSGGYIVINQTEALVSID 470

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNSG+STREH IEDTALQTNLEAAEE+ RQLRLRDLAGL+V+DFIDMEE KNNRSVE+KL
Sbjct: 471 VNSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLAGLVVIDFIDMEESKNNRSVERKL 530

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           K+ LK DRAR+QVG IS+FGLLEMSRQR+R+ VLES+T  C +C+G G IRS  SVAL +
Sbjct: 531 KDCLKNDRARIQVGRISHFGLLEMSRQRLRTGVLESSTTPCPHCQGTGMIRSVESVALHV 590

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LRS+E+ LL+   H++I+ T ++V LY+LNQKR+ + + E RF V I V     +  +L+
Sbjct: 591 LRSIEDNLLKGATHDLIIRTSAEVALYILNQKRSNLFDLEVRFLVGIEVQADHMVNGQLY 650

Query: 564 YIEKGS--PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            +E+G+             V  D      +   + V +++A     +  +    +     
Sbjct: 651 VLERGALIDRDRQPVPTATVQPDMIDIIDEDTEQPVAEEQAQQDQDEDNNDRRRKRRRKR 710

Query: 622 EESTGVIRKRRRRRRRRRPAT---DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                  +            T   +  +A    + +  +                 +  +
Sbjct: 711 RRGGSDAQNEETLEANADSETVDDEQAEARGADEDNDDEPRRKRRRGRRGGRRGRRDDEM 770

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSS 708
                     + D S  PVS    ++  + 
Sbjct: 771 ENRADDANGSDGDSSDAPVSDENPDAEQTE 800



 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 78/155 (50%), Positives = 100/155 (64%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MANKMLIDAGHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ALL      +   E   ++            + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALLAAEAAERQPDETEQEEKPKRRRRSRAARNE 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155
            +   +A+   ET +E    ++ +  +  +     
Sbjct: 121 SDADTVASEKVETPDEDEEGSDPEANAGSDSETTE 155



 Score = 38.0 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/154 (8%), Positives = 40/154 (25%), Gaps = 3/154 (1%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                     ++                +A      + S   + + + + ++  + +   
Sbjct: 767 DDEMENRADDANGSDGDSSDAPVSDENPDAEQTEVTAASDAPVSETVAAADTGNLEQPVN 826

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT---EN 689
                    ++  +    ++  +  +  +    +      +    + E      T   E 
Sbjct: 827 GVDASASEPSEAVEPSQAAEPEAAVSTEEPVAQIDKAEEIVIETPVSEAPVEAETVAEEP 886

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              S P       E+S        K+  WW+R +
Sbjct: 887 VKPSAPAEPVVTSETSGEEEADKPKRGGWWQRGR 920


>gi|52842507|ref|YP_096306.1| ribonuclease E [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629618|gb|AAU28359.1| ribonuclease E [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 667

 Score =  313 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 205/647 (31%), Positives = 318/647 (49%), Gaps = 27/647 (4%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R AL+K + +   D E   +    G++        E           ++ +  +      
Sbjct: 19  RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 78

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
              +        ++ P        I  +I+  Q LL+Q+ KEERGNKGAA+TT+++LAG 
Sbjct: 79  PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 131

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMPN      ISR+I      + L+E    L +P  MG+I+RTAG  ++  E++ D 
Sbjct: 132 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 190

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             L   W +++E   + +AP L+++EG++I R+IRD   K ISEII+  +  Y +AK ++
Sbjct: 191 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 250

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           + + P +   ++ Y    P+F    IE Q+++ +Q +V LPS G ++I++TEALVSID+N
Sbjct: 251 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 310

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           S ++T    IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   KN R VE +LKE
Sbjct: 311 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 370

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+  ++C  C+G G +RS  S  LSI R
Sbjct: 371 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 430

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +EE  L+     I V    ++  +++N+KR  I + E R GVS+ V+    +    + I
Sbjct: 431 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 490

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +        +         Q   +    + E V  DE  +       +         + 
Sbjct: 491 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 550

Query: 624 ---------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
                          +    +K  R + + + A+     G      S  N    S     
Sbjct: 551 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHASSKSSGGDKRQQGSNANRRRRSGGGQQ 610

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             S    +       H   +  + +     + +   S  + +   KK
Sbjct: 611 RSSSGNTNAAA--STHQQRKKSNANQQSHGSQQSNRSIPAKNEGNKK 655


>gi|183599500|ref|ZP_02960993.1| hypothetical protein PROSTU_02978 [Providencia stuartii ATCC 25827]
 gi|188021746|gb|EDU59786.1| hypothetical protein PROSTU_02978 [Providencia stuartii ATCC 25827]
          Length = 1083

 Score =  313 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 202/631 (32%), Positives = 324/631 (51%), Gaps = 10/631 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
             + E  P  +    +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   +++D  Y +R 
Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLEIPDGMGLIVRTAGVGKSAESLQQDLLYRLRH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330
           W+ +++ A N  AP L+++E N+I RA RD    DI EI++   K    A++ ++ +   
Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIEAIGRG 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LS+LR +EE 
Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSVLRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  + E E R   V + +V   ++    F++ +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVSEIETRQRNVRVVIVPNDQMQTPHFHVIRIR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + +    + +    +  + +   +   + +A  P   + S   +Q+ +    +     
Sbjct: 491 KGEEVNTLSYNLAHYHETETLNSTEDPAAERKA--PEQPAISAFALQEPVEQPVTVKSKE 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            + R    ++           S V+     +    +  +       +             
Sbjct: 549 NKARTETPKQGVKVDAQPSFFSKVAEFFKKLFAGEEEKVAEKPAEKNRQNSGNDKRRNNE 608

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
              +         E+S++  +   +  R  +
Sbjct: 609 RRNNRRNNRRDRDENSDNRENRDNRSNRNAQ 639



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|148825306|ref|YP_001290059.1| ribonuclease E [Haemophilus influenzae PittEE]
 gi|148715466|gb|ABQ97676.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittEE]
          Length = 935

 Score =  313 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 193/617 (31%), Positives = 317/617 (51%), Gaps = 17/617 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           + +    + +         +     V ++     + +  ++E     +   E+     +R
Sbjct: 491 EEVNELSYNLAKIHCEKDENTEESLVSRNIETTAVIEQPAVESAAVALSISEAAPTPVER 550

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           +            ++  +++ + +    +  +     +P +               +   
Sbjct: 551 K-----------SNEPSLLAKIIAKIKGLFTAKSEENKPKNNRTSRNSNRNQRRSQDRRT 599

Query: 692 VSIPPVSTPEMESSNSS 708
              P     E E +   
Sbjct: 600 SRRPRSENNEAERTEEQ 616



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|319763868|ref|YP_004127805.1| ribonuclease, rne/rng family [Alicycliphilus denitrificans BC]
 gi|317118429|gb|ADV00918.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans BC]
          Length = 1022

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 184/534 (34%), Positives = 286/534 (53%), Gaps = 6/534 (1%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             Q  I +VI+  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           + +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM+ +MP +
Sbjct: 191 NAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAQQFMQHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AARVKRYRDDAPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA
Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ GAIS FGL+EMSRQR++ S+ E     C  C G G++R     +L +LR ++E  +
Sbjct: 371 RVQFGAISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      +V  +LLN+KR  I + E +  V++ ++    L    + +E+     
Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVVLIPNKTLETPHYKLERLKHDD 490

Query: 573 ALVNT-----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             +             + Q     ++ E   +   ++     ++   + +    
Sbjct: 491 PRLENLDASYKLADVVEEQTRVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPE 544



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGN 110


>gi|91784731|ref|YP_559937.1| ribonuclease E [Burkholderia xenovorans LB400]
 gi|91688685|gb|ABE31885.1| RNAse E [Burkholderia xenovorans LB400]
          Length = 1096

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 195/531 (36%), Positives = 296/531 (55%), Gaps = 7/531 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KRA I + E+RF V++ ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             A ++        ++  + +   E  +        PK E+          
Sbjct: 491 DDARLDEPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEKP 541



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|168237269|ref|ZP_02662327.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737331|ref|YP_002114184.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712833|gb|ACF92054.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289857|gb|EDY29218.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1067

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|187924898|ref|YP_001896540.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN]
 gi|187716092|gb|ACD17316.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN]
          Length = 1097

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 195/531 (36%), Positives = 296/531 (55%), Gaps = 7/531 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KRA I + E+RF V++ ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             A ++        ++  + +   E  +        PK E+          
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEKP 541



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|115524985|ref|YP_781896.1| ribonuclease [Rhodopseudomonas palustris BisA53]
 gi|115518932|gb|ABJ06916.1| RNAse E [Rhodopseudomonas palustris BisA53]
          Length = 1016

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 274/539 (50%), Positives = 367/539 (68%), Gaps = 11/539 (2%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
               +   + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+
Sbjct: 289 EEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 348

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKIT+  DR  LKE+ + L+VP GMG+ILRTAGA+RTK EIKRDFEYL+R+W+ 
Sbjct: 349 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIRMWET 408

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM++LMPS  R
Sbjct: 409 VRDMTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMQMLMPSNVR 468

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V+QY D  P+F R G+E QLD++    V L S GY++INQTEALVSIDVNSGRSTREH 
Sbjct: 469 AVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 528

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+K+ + L++DRAR+
Sbjct: 529 IEDTALKTNIEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKISDCLRQDRARI 588

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           Q+G IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++ 
Sbjct: 589 QIGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEILMKG 648

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573
             HN++V T +DV LY+LN KR  + + E  F VS++V+    +   + F I++G  V  
Sbjct: 649 ATHNLMVRTRTDVALYVLNHKRGHLRDLENSFKVSLSVLADPTVSGQQSFVIDRGEQVHT 708

Query: 574 LVNTGHKVGSDSQAPSYDKNI----------ECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           L      + +   A     +             +  DE +    ++ + E+  D    + 
Sbjct: 709 LEAAKATMAAQLAASPAAVDEPYDDEEFEFEPEIETDETVGLADEATAGENESDADGRKR 768

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                R+ R    R            ++ +++    ID          +  +    E  
Sbjct: 769 KRRRRRRGRSSDTRDGAPVREEGDFSIAPINAADATIDGDEGTDEGGDETEDEARTETN 827



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/131 (55%), Positives = 92/131 (70%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M NKMLIDA+H EETRVVV+R NRVEE DFE+  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 5   MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 64

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQAL++    A  + E  +++ ++   +   +   
Sbjct: 65  YGGNRHGFLAFSEIHPDYYQIPMADRQALIEADERAHREEEEESENRSNRRRSRHRNSRR 124

Query: 121 EEVAPIANFSQ 131
                      
Sbjct: 125 RGNGERMQSEI 135



 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 24/157 (15%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             P +            SQ PS     E   + +  +   ++E +E+ +     ++++   
Sbjct: 876  EPREQASEEPSTEFVASQ-PSVPSREEPASEPQPSVIADRAERVEEPRAEPAQDDTSSES 934

Query: 629  RKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             K RRR   R +   +T+   A V +DV S                              
Sbjct: 935  GKPRRRSTVREKVSFSTEPVAASVGADVPSPT--------------------PEPASTEA 974

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             T+           PE  +   +S    ++  WW RR
Sbjct: 975  STDAAAPVEAVAPEPEPAADAPASASEPRRAGWWSRR 1011


>gi|153803670|ref|ZP_01958256.1| ribonuclease E [Vibrio cholerae MZO-3]
 gi|124120794|gb|EAY39537.1| ribonuclease E [Vibrio cholerae MZO-3]
          Length = 619

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 196/590 (33%), Positives = 305/590 (51%), Gaps = 12/590 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      +           +   E   ++   + +      E +     +          
Sbjct: 488 EEQDVLSYL-----IPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTP 542

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           + +    +P  +          S +   I   F    E + +       +
Sbjct: 543 KPKAEP-QPVAEVQQPAQPGFFSRVFKAIASLFSETPEAAKVEAPVTQNS 591



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|90579092|ref|ZP_01234902.1| Putative ribonuclease E [Vibrio angustum S14]
 gi|90439925|gb|EAS65106.1| Putative ribonuclease E [Vibrio angustum S14]
          Length = 1094

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 202/556 (36%), Positives = 305/556 (54%), Gaps = 12/556 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     L++P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ V+E A +  AP L+++E N+I RAIRD   +DI EI++   K +  A+D +KL+ P 
Sbjct: 191 WNAVKEAADSQSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q+DS  Q EV LPS G V+I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  VC  C G G +R   S++LSILR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  ++      V  YLLN+KR ++   E   GV + +V   ++    F + +    
Sbjct: 431 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------ESLEDIQDNIVSEEST 625
           +      + +    +A    + IE    +  +    +          +       + + T
Sbjct: 491 EEQDTLSYHIPKTLEALKEAEAIEAPQPERVIKKREEPVLQGFTAPKQPAPVAKPAAKPT 550

Query: 626 GVIRKRRRRRRRRRPA 641
             +  +      ++P 
Sbjct: 551 PKVTAKPATESTKKPG 566



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  E+  DY      YQ   + ++ L +   +     +    + 
Sbjct: 62  AERHGFLPLKEVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112


>gi|62179702|ref|YP_216119.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224584311|ref|YP_002638109.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62127335|gb|AAX65038.1| RNase E [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|224468838|gb|ACN46668.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322714172|gb|EFZ05743.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 1068

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|52425677|ref|YP_088814.1| CafA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307729|gb|AAU38229.1| CafA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 960

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 201/629 (31%), Positives = 326/629 (51%), Gaps = 8/629 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPDDYVYQGRPNIKDIIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K Y +AK  +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   ++ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FISRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQRI  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRISPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +      ++  YLLN+KR  I + E R  V I VV   E+    F + +    
Sbjct: 431 LKENTKQVHTVVPVNIASYLLNEKRKAIHDIEKRHNVEILVVPNKEMETPHFSVFRVRDG 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + +    + +    + Q  ++  +     +      +     LE    ++   E    I 
Sbjct: 491 EEINTLSYNLVKVYEEQETTFIADEPFTTRVTETAAVTTENVLESAALSMTISEPAPTIE 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            ++  +            G+ +    ++  ++++             +           N
Sbjct: 551 VKKEEQPSLFVRIVAAIKGLFASEPKVEEKVEEAPQPNTRNRRNNQEHRNSRRNRNERNN 610

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
              +  P    + E S   ++   +  R 
Sbjct: 611 RGNNEEPADKVQSEKSAEKAERPARSERT 639



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|91775674|ref|YP_545430.1| ribonuclease E [Methylobacillus flagellatus KT]
 gi|91709661|gb|ABE49589.1| RNAse E [Methylobacillus flagellatus KT]
          Length = 904

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 203/573 (35%), Positives = 295/573 (51%), Gaps = 32/573 (5%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   IQ+V+K  Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I  
Sbjct: 86  RSPRIQDVLKEGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRIEG 145

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
                 L++    L+VP+GM +I RTAG  R+  E++ D  YL++LW  V   +     P
Sbjct: 146 EER-NELRDTMAQLQVPSGMSIIARTAGIGRSVEELQWDLNYLLQLWTAVESASTIQSGP 204

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y+EG+L+ RAIRD +  DI EI++     Y +A  FM  +MP+    V+ Y D  P+
Sbjct: 205 FLIYQEGSLVIRAIRDYFQPDIGEILIDTPDIYEQAVQFMNHVMPNNVSRVKLYRDEIPL 264

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q++S    EV LPS G ++I+ TEALVS+DVNSGRST+   IE TA  TNLE
Sbjct: 265 FSRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRSTKGSDIEQTAFNTNLE 324

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+E+ARQLRLRDL GL+V+DFIDME ++N R VE +L+E+L  DRARVQ G IS FGLL
Sbjct: 325 AADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLREALHHDRARVQTGKISRFGLL 384

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R S+ ES    C  C G G+IR   S AL ILR  +E  ++  +  I V    
Sbjct: 385 ELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHILRITQEEAMKENSAIIQVQLPV 444

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV---- 581
           +   +LLN+KR+ I + E R GV + ++  I +    + I +                  
Sbjct: 445 EAATFLLNEKRSEIHKIEQRMGVQVVLIPNIHMETPNYNILRIRHDDVEETGRASYEMVE 504

Query: 582 -GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK---------R 631
             S++   +  +  +    + A+  I  +              ST ++ +          
Sbjct: 505 LPSETLETALAQEPKPAKAEAAVKGITPASPAPAAAREKEKPSSTSLLHRFKSWLASVAA 564

Query: 632 RRRRRRRRPATDHHDA-----------------GVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            +   + +  T   D+                    +D         +         +  
Sbjct: 565 PKPEVKPQEETQQRDSNRNPRRNNRRNERSASERTGNDRQMQNEQRQEQRKEQRSQQERR 624

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
                +  A G  E  +        P+++    
Sbjct: 625 PQQAEQRAAQGRQERAERPERNERQPKVQQPQP 657



 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ +LD ES  K+Q K NIY   +TR+EPSL+AAFV+YG
Sbjct: 2  KRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGVITRIEPSLEAAFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF EI   Y+
Sbjct: 62 TDRHGFLPFKEIARSYF 78


>gi|312172071|emb|CBX80328.1| K08300 ribonuclease E [Erwinia amylovora ATCC BAA-2158]
          Length = 939

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 309/629 (49%), Gaps = 9/629 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSHYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +A     + E   + ++      +  +         E +     
Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPAPHEVAVVPAV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            +   +    PA+      V   VS ++ +         +P            +    E 
Sbjct: 551 TKAAVKTPA-PASPAQPGLVSRIVSGLKKLFAAPEKPAQQPPQPAVEEKSAEASAPRGER 609

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            +              N  +D   +  R 
Sbjct: 610 RNNRRQNNRRDRNGDRNERNDRNERNDRN 638



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|330823868|ref|YP_004387171.1| Rne/Rng family ribonuclease [Alicycliphilus denitrificans K601]
 gi|329309240|gb|AEB83655.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans K601]
          Length = 1028

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 183/534 (34%), Positives = 286/534 (53%), Gaps = 6/534 (1%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             Q  I +VI+  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           + +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM+ +MP +
Sbjct: 191 NAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAQQFMQHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AARVKRYRDDAPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA
Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ GAIS FGL+EMSRQR++ S+ E     C  C G G++R     +L +LR ++E  +
Sbjct: 371 RVQFGAISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      +V  +LLN+KR  I + E +  V++ ++    L    + +++     
Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVVLIPNKTLETPHYKLDRLKHDD 490

Query: 573 ALVNT-----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             +             + Q     ++ E   +   ++     ++   + +    
Sbjct: 491 PRLENLDASYKLADVVEEQTRVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPE 544



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGN 110


>gi|255067490|ref|ZP_05319345.1| ribonuclease E [Neisseria sicca ATCC 29256]
 gi|255048285|gb|EET43749.1| ribonuclease E [Neisseria sicca ATCC 29256]
          Length = 1012

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 205/635 (32%), Positives = 318/635 (50%), Gaps = 7/635 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 12  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 72  FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 132 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MPS
Sbjct: 191 WQAIEEAGKAHHEPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ YED  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 251 NIGRLKLYEDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSIDVNSARATR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 311 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 371 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 431 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 490

Query: 572 QALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI-- 628
               +                       + +A  P P  + +   Q      E       
Sbjct: 491 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTVSEQKSGSWW 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              +   +R        +   V++V+  +    ++ +         N        +    
Sbjct: 551 DTFKAWLKRIFGGNTAAEPAPVAEVAEKRTSNGNNRNGNSGNRRANNRRQNPRRNNRHDG 610

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +           +  + N +++   +  +  +R +
Sbjct: 611 SKVEVREVADFKDKAADNQAAENETRNAKDNRRSR 645



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 4  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 63

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y+Q
Sbjct: 64 TDRHGFLPFKEVSRSYFQ 81


>gi|283833620|ref|ZP_06353361.1| ribonuclease E [Citrobacter youngae ATCC 29220]
 gi|291071303|gb|EFE09412.1| ribonuclease E [Citrobacter youngae ATCC 29220]
          Length = 1083

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 190/535 (35%), Positives = 292/535 (54%), Gaps = 9/535 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPASYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             +      + +     +A       E V + +   P   + ++ D+      +E
Sbjct: 491 KGEETPTLSYLLPKLHEEAMELPSEQEYVERKQPEQPALATFAMPDVPPAPTVQE 545



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|261493498|ref|ZP_05990020.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495851|ref|ZP_05992283.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308478|gb|EEY09749.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310831|gb|EEY12012.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 980

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 204/656 (31%), Positives = 319/656 (48%), Gaps = 35/656 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++I+  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSDYVFNGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ +C  C+G G +R   S+ALSILR +EE  
Sbjct: 371 ARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V I VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLREN 490

Query: 572 Q-------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           +                N         Q        E V   E++L   +          
Sbjct: 491 EITPTLSYDLTKHYEARNEEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPT 550

Query: 619 IVSEES-------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
              + S             +    + + + + R            +  +  +N    +  
Sbjct: 551 EPPKPSLLSRLIATIKGWFSEEKVEEKPKPKARNQRDRRQRRERPNRNTKAENQERKTVQ 610

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTRW 718
               P++       +       E         S     E+++       + KK R 
Sbjct: 611 AQATPAEEKPVRSEKKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRV 666



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|308186401|ref|YP_003930532.1| ribonuclease E [Pantoea vagans C9-1]
 gi|308056911|gb|ADO09083.1| ribonuclease E [Pantoea vagans C9-1]
          Length = 1136

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 191/542 (35%), Positives = 288/542 (53%), Gaps = 9/542 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALDLPEGMGLIVRTAGVGKSAESLQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A N  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+D+IDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +        +     E   +     P   +  + D     V  E     
Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPAPVEVEPEVKR 550

Query: 629 RK 630
            +
Sbjct: 551 TE 552



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|167553026|ref|ZP_02346776.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322414|gb|EDZ10253.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 1067

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|307730550|ref|YP_003907774.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
 gi|307585085|gb|ADN58483.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
          Length = 1097

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 197/531 (37%), Positives = 297/531 (55%), Gaps = 7/531 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +K  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGTAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR+ I + E+RF V++ +V    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             A ++        ++  + +   E  +   A    PK E+          
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAEDVKPKQEAAVKGITPEKP 541



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGN 110


>gi|89073416|ref|ZP_01159940.1| Putative ribonuclease E [Photobacterium sp. SKA34]
 gi|89050903|gb|EAR56377.1| Putative ribonuclease E [Photobacterium sp. SKA34]
          Length = 1094

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 206/588 (35%), Positives = 310/588 (52%), Gaps = 9/588 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     L++P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ V+E A +  AP L+++E N+I RAIRD   +DI EI++   K +  A+D +KL+ P 
Sbjct: 191 WNAVKEAADSQSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q+DS  Q EV LPS G V+I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  VC  C G G +R   S++LSILR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  ++      V  YLLN+KR ++   E   GV + +V   ++    F + +    
Sbjct: 431 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +    +A    + IE    +  +      E +                  +
Sbjct: 491 EEQDTLSYHIPKTLEALKEAEAIEIPQPERVIKKRE--EPVLQGFTAPKQPAPVAKPAAK 548

Query: 632 RRRRRRRRPATDH-HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              +   +P T+     G++S   S             +   +     
Sbjct: 549 PTPKVAAKPVTESTQKPGLLSRFFSALASFFSGSPEQQQEKPVEAKAE 596



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  E+  DY      YQ   + ++ L +   +     +    + 
Sbjct: 62  AERHGFLPLKEVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112


>gi|239994406|ref|ZP_04714930.1| RNase E [Alteromonas macleodii ATCC 27126]
          Length = 1132

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 215/647 (33%), Positives = 318/647 (49%), Gaps = 21/647 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +      KF+ +  I++VIK  Q ++VQI KEERG KGAA+TT+LSLAG Y VLMP
Sbjct: 72  EIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFLSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKESLSKLDLPEGMGLIVRTAGVGKSYEELEWDLKVLLTH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +  +A    AP L+++E N+I RAIRD   +DI EI++     Y +A   ++L+ P 
Sbjct: 191 WEAISSVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A  V+ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++K++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ ES   VC  C G G IR   S+ALSILR +EE  
Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLALSILRILEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     I       V  YLLN+KR +I   E R GV + ++    L    + + +  P 
Sbjct: 431 IKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTPHYQVLRRRPD 490

Query: 572 QALVNTGHKVG--SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +    + V      +A +       + ++E  L    + +   +              
Sbjct: 491 DVISEASYDVELMPAVEAETETTTSAPIKREEPALKGLVAPTAAPVVAPKEETAKKADDV 550

Query: 630 KRRRRR-----------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                R                          +   + ++  +D         +    N 
Sbjct: 551 PSLFARFGKWISDLFGSESEEETNKDKKPQSGNKNRNNRSRNNDDRRRKPRNKNNRRGNQ 610

Query: 679 LENGAHGFTENYDVSIPPVSTPEME--SSNSSSDPIVKKTRWWKRRK 723
            +N   G  +N D        P  E            +  +  K RK
Sbjct: 611 SQNRDQGKDQNRDGEQQDNRKPRGEQQRDQRQDQDDKRNNKGRKPRK 657



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI   Y+
Sbjct: 62 AERHGFLPLKEIARTYF 78


>gi|261339386|ref|ZP_05967244.1| ribonuclease E [Enterobacter cancerogenus ATCC 35316]
 gi|288318187|gb|EFC57125.1| ribonuclease E [Enterobacter cancerogenus ATCC 35316]
          Length = 1069

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 194/629 (30%), Positives = 311/629 (49%), Gaps = 11/629 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KRA +   EAR  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQTPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   + E   +     P   +  + +       E+     
Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPEAAMEKPAAKP 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
             ++      +   +    G++S +      +    +   E                  +
Sbjct: 551 AAQKTAPEVAKAQPEQ--PGLLSRIIGALKKMFAGEEAQPEQPKEAPKQAKPERQQDRRK 608

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +         +    N  ++   +  R
Sbjct: 609 RQNNRRDRNDRSDRNERNDRNERNDRNER 637



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|172060046|ref|YP_001807698.1| ribonuclease [Burkholderia ambifaria MC40-6]
 gi|171992563|gb|ACB63482.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MC40-6]
          Length = 1059

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 189/468 (40%), Positives = 280/468 (59%), Gaps = 3/468 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I
Sbjct: 83  DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW  +   + +  
Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201

Query: 284 --APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
              P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP     V++Y D
Sbjct: 202 AGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKVKRYHD 261

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +
Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK DRARVQ+G IS 
Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  ++     I  
Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
               +V  +LLN+KR  I + E+RF V I ++    L    + +E+     A ++     
Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              ++  + +   E  +        PK E+            S    R
Sbjct: 502 WKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPSAAPQR 549



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|261364851|ref|ZP_05977734.1| putative ribonuclease E [Neisseria mucosa ATCC 25996]
 gi|288566898|gb|EFC88458.1| putative ribonuclease E [Neisseria mucosa ATCC 25996]
          Length = 1010

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 204/633 (32%), Positives = 317/633 (50%), Gaps = 7/633 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            A+    A+ D     D+ I      +    I        E S+ +   D  ++      
Sbjct: 10  QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S          +  IQ+V+K    ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ LK     L++P GM +I RTAG  R+  E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E       P+L++ E +L+ RAIRD +  DI EI+V  ++ Y +  +FM  +MPS
Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYEQVAEFMSYVMPS 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               ++ Y+D  P+F R  IE Q++S     V+LPS G ++I+ TEALVSIDVNS R+TR
Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSIDVNSARATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME  K+ R VE  L+++LKKDR
Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G +S FGLLE+SRQR++ ++ ES+   C  C G G IR   S AL +LR ++E  
Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  +LLN+KRA +   E R  V++ ++  I L +  + I +    
Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488

Query: 572 QALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI-- 628
               +                       + +A  P P  + +   Q      E       
Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTVAEQKNGSWW 548

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              +   +R        +   V++V+  +    ++ +         N        +    
Sbjct: 549 DSFKAWLKRIFGGNTAAETAPVAEVAEKRTSGSNNRNGNSGNRRANNRRQNPRRNNRHDG 608

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           +           +  + N +++   +  +  +R
Sbjct: 609 SKVEVREVADFKDKAADNQAAENETRNAKDNRR 641



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++    + +LD E+  K+Q KGNIY   +TR+EPSL+A FVDYG
Sbjct: 2  KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLPF E+   Y++
Sbjct: 62 TDRHGFLPFKEVSRSYFR 79


>gi|16764541|ref|NP_460156.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167994050|ref|ZP_02575142.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263217|ref|ZP_03163291.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|16419702|gb|AAL20115.1| RNase E [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197241472|gb|EDY24092.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205328040|gb|EDZ14804.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261246396|emb|CBG24205.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992960|gb|ACY87845.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157726|emb|CBW17218.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912172|dbj|BAJ36146.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223803|gb|EFX48866.1| Ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129455|gb|ADX16885.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988076|gb|AEF07059.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 1067

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684
                 ++    A      G+ S   +    +    +        P         ++   
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|197250329|ref|YP_002146858.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197214032|gb|ACH51429.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 1067

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684
                 ++    A      G+ S   +    +    +        P         ++   
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|168244784|ref|ZP_02669716.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194449847|ref|YP_002045184.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194408151|gb|ACF68370.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205336415|gb|EDZ23179.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 1067

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|194445751|ref|YP_002040439.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404414|gb|ACF64636.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 1068

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|326623700|gb|EGE30045.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 1065

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 547

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 548 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 604

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 605 PRQNNRRDRNERRDTRDNRA 624



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|168467139|ref|ZP_02700981.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195630355|gb|EDX48981.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 1068

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|134295141|ref|YP_001118876.1| ribonuclease E [Burkholderia vietnamiensis G4]
 gi|134138298|gb|ABO54041.1| RNAse E [Burkholderia vietnamiensis G4]
          Length = 1074

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 197/522 (37%), Positives = 295/522 (56%), Gaps = 7/522 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   +   NS  P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V I ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
             A ++        ++  + +   E  +        PK E+ 
Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAA 532



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|322616555|gb|EFY13464.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620504|gb|EFY17368.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622498|gb|EFY19343.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629649|gb|EFY26424.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632631|gb|EFY29377.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636874|gb|EFY33577.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641588|gb|EFY38226.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646485|gb|EFY42995.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650022|gb|EFY46440.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653947|gb|EFY50270.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658479|gb|EFY54741.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663337|gb|EFY59539.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670071|gb|EFY66211.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674865|gb|EFY70956.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676665|gb|EFY72732.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682587|gb|EFY78606.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686660|gb|EFY82639.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195774|gb|EFZ80950.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198334|gb|EFZ83438.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204844|gb|EFZ89838.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209185|gb|EFZ94122.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213431|gb|EFZ98227.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217855|gb|EGA02570.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222143|gb|EGA06527.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323229657|gb|EGA13780.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323232882|gb|EGA16978.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240617|gb|EGA24659.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242931|gb|EGA26952.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323252623|gb|EGA36461.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258849|gb|EGA42502.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261038|gb|EGA44631.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266947|gb|EGA50432.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269988|gb|EGA53437.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 1068

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684
                 ++    A      G+ S   +    +    +        P         ++   
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|168234112|ref|ZP_02659170.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471877|ref|ZP_03077861.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458241|gb|EDX47080.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331900|gb|EDZ18664.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1067

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684
                 ++    A      G+ S   +    +    +        P         ++   
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|54298187|ref|YP_124556.1| ribonuclease E [Legionella pneumophila str. Paris]
 gi|53751972|emb|CAH13396.1| Ribonuclease E [Legionella pneumophila str. Paris]
          Length = 663

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 205/646 (31%), Positives = 315/646 (48%), Gaps = 25/646 (3%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R AL+K + +   D E   +    G++        E           ++ +  +      
Sbjct: 15  RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
              +        ++ P        I  +I+  Q LL+Q+ KEERGNKGAA+TT+++LAG 
Sbjct: 75  PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMPN      ISR+I      + L+E    L +P  MG+I+RTAG  ++  E++ D 
Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             L   W +++E   + +AP L+++EG++I R+IRD   K ISEII+  +  Y +AK ++
Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           + + P +   ++ Y    P+F    IE Q+++ +Q +V LPS G ++I++TEALVSID+N
Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           S ++T    IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   KN R VE +LKE
Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+  ++C  C+G G +RS  S  LSI R
Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +EE  L+     I V    ++  +++N+KR  I + E R GVS+ V+    +    + I
Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +        +         Q   +    + E V  DE  +       +         + 
Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEIHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546

Query: 624 --------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                          T    K+  R + +        +G                    +
Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHPSSKSSGGDKRQQGSNANRRRRSGGGQQ 606

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            S   N N     AH   +  + +       +   S  + +   KK
Sbjct: 607 RSSSGNTNAA-TSAHQQRKKSNPNQQSHGGQQSNRSIPAKNEGNKK 651


>gi|109898451|ref|YP_661706.1| ribonuclease [Pseudoalteromonas atlantica T6c]
 gi|109700732|gb|ABG40652.1| RNAse E [Pseudoalteromonas atlantica T6c]
          Length = 1070

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 207/650 (31%), Positives = 321/650 (49%), Gaps = 34/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +         
Sbjct: 27  EELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 86

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +      KF+ +  I++VIK  Q +++QI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 87  EIARTYFPQGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMP 146

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LK+    L +P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 147 NNPRAGGISRRIEGDERTD-LKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTH 205

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E A +  AP L+++E N+I RAIRD   +DI EI++     Y +A   ++L+ P 
Sbjct: 206 WTAISEAADSRPAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPD 265

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A  V+ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 266 FANRVKLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 325

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA  TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++K++++ DR
Sbjct: 326 GSDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDR 385

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ +S   VC  C G G +R   S+ALS+LR +EE  
Sbjct: 386 ARVQLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTESLALSVLRIMEEES 445

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     I      +V  YLLN+KR  +   E R  V + ++    +    + + +  P 
Sbjct: 446 IKDNTGQIEAQLPVNVATYLLNEKRGAVAGVEKRHKVQLVIIPNPNMETPHYNVARRRPD 505

Query: 572 QALVNTGHKVG--SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI- 628
            A+ +  + V    +    +         +++ +L    S +          +++     
Sbjct: 506 DAIHDMSYNVELMKNEDTEADKAVTATPVKEQPMLQSFVSPAKAAAVQPETPKKADVESV 565

Query: 629 ------------------------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
                                     + +R+ ++R   ++       D  S     + S 
Sbjct: 566 SLLSKIASWLKSLFAPAPQPEPEPEVKPQRKPQQRRNRNNPRRSKQGDNRSDNRDDNRSS 625

Query: 665 DMYMEPSDITNHNLL-ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                 SD  + N    N      +N        S  E+ ++    D   
Sbjct: 626 SKDDNRSDNRDGNEKPNNRKPRRNDNRKPRNDNKSPKELTNTEQKKDQKP 675



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 52/77 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 17 KRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 76

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI   Y+
Sbjct: 77 AERHGFLPLKEIARTYF 93



 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 7/128 (5%), Positives = 35/128 (27%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
            +     +    +        + +        S +D   +   + +     ++ RR   R
Sbjct: 593 PQRKPQQRRNRNNPRRSKQGDNRSDNRDDNRSSSKDDNRSDNRDGNEKPNNRKPRRNDNR 652

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           +P  D+     +++    ++    +    ++   +       +       +        +
Sbjct: 653 KPRNDNKSPKELTNTEQKKDQKPAAPQKEVKEHKVAERRKRRDNRRSVRVDDSKEQTAKA 712

Query: 699 TPEMESSN 706
                +++
Sbjct: 713 KTHTSNAD 720


>gi|322833657|ref|YP_004213684.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602]
 gi|321168858|gb|ADW74557.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602]
          Length = 1094

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 199/634 (31%), Positives = 314/634 (49%), Gaps = 15/634 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSAEALQWDLTFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ EST  +C  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESTHHICPRCAGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR ++   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + +    + +    +A     + E    +     P   + +L+        E++    
Sbjct: 491 KGEEISALSYLLPQIHEAEMLQPSEELPTERRRPEQPALAAFALQSEAPPSSFEQAAVTE 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                   + R AT +  A  V++ S   + +         P        +E       E
Sbjct: 551 EP-----VKTRTATVNAPATPVAEKSGFVSRLLSGLKSLFAPEPQQEVKPVE-APQETPE 604

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +      +    +           +      R
Sbjct: 605 ATETENRRNNERRNQRRQGGRRDRNGERGERNDR 638



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|157962325|ref|YP_001502359.1| ribonuclease [Shewanella pealeana ATCC 700345]
 gi|157847325|gb|ABV87824.1| ribonuclease, Rne/Rng family [Shewanella pealeana ATCC 700345]
          Length = 1084

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 207/650 (31%), Positives = 326/650 (50%), Gaps = 24/650 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+K  Q +++QI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     LEVP GMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  ++E A  + AP L+++E N+I RAIRD   +D+ EI++   + Y +AK+ + L+ 
Sbjct: 189 HHWAAIKEAAEGAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   +++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERIKRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VEK++++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEKRHNVEVYVIPDPNMTTPDYRVVRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV- 627
               +  + +K+    ++  Y+    E     +  L    +     + +   +       
Sbjct: 489 KDDEISESSYKLLEKEESKLYEPRKLERAAAPQPALKGFSTPKKAPVVETKPAAPKKEEP 548

Query: 628 ---------------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                           ++  +   +++      + G  ++  +     D   +     SD
Sbjct: 549 GFFAKIAAAISSLFGSKEEPKAETKKQDKDSRGNQGRTNNRRNSNRRNDPRRNRNENRSD 608

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTRWWKR 721
             N +  ++       + +          + +   S   P   K R  + 
Sbjct: 609 NRNDSRNDSEQAKDKRSKNSRSDKSDDRSQAQEDTSKRQPRADKPRSRQE 658



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|207857307|ref|YP_002243958.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206709110|emb|CAR33443.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 1068

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|204930832|ref|ZP_03221705.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320291|gb|EDZ05495.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1067

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYSAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDY 
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYS 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|317492377|ref|ZP_07950806.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919716|gb|EFV41046.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 1133

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 204/681 (29%), Positives = 324/681 (47%), Gaps = 55/681 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K    AK  +  L  P
Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +       V  YLLN+KR ++   E R  GV + VV   ++    + + +  
Sbjct: 431 ALKENTNEVHAIVPVPVASYLLNEKRESVSAIEKRQDGVKVIVVPNDQMQTPHYSVVRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECV-WQDEALLP----------------------- 605
             +      + +    +A S     E V  +     P                       
Sbjct: 491 KGEETSTLSYLLPQLHEAESLTAEEEPVLERKRPEQPALAPFSLDVEAPPAETAAPATVT 550

Query: 606 ------IPKSESLED---------------IQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
                    +E  +                  ++     +         RR+ +    ++
Sbjct: 551 PATKAVAKPAEPAQPGLVSRFFSALKNMFAGSESEQKPAAEPAAPVEEPRRQNQDRRNNN 610

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                  D +   +  +D      E S+  N++   +     +   D         +  +
Sbjct: 611 RRQNGRRDRNDRNDRNNDRNSDRPERSNDRNNDRSNDRNERNSNREDQRRNRRQPAQAVN 670

Query: 705 SNSSSD--PIVKKTRWWKRRK 723
           ++ + D  P  ++     RR+
Sbjct: 671 TDVNVDAAPTEQRDEQQPRRE 691



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78



 Score = 43.8 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 4/158 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E  +PV+          ++++  +  ++              + E   D  ++  ++ + 
Sbjct: 591 EPAAPVEEPRRQNQDRRNNNRRQNGRRDRNDRNDRNNDRNSDRPERSNDRNNDRSNDRNE 650

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +  +RR RR+PA    +  V  D +  +   +         +D       +     
Sbjct: 651 RNSNREDQRRNRRQPA-QAVNTDVNVDAAPTEQRDEQQPRREPRNNDRQRRRTEDKRQAQ 709

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +   V+  E E SN   +  + +    +RR+
Sbjct: 710 QEVKALENNDVVAATEAEESNREENQHMPR---RQRRQ 744


>gi|268315782|ref|YP_003289501.1| ribonuclease, Rne/Rng family [Rhodothermus marinus DSM 4252]
 gi|262333316|gb|ACY47113.1| ribonuclease, Rne/Rng family [Rhodothermus marinus DSM 4252]
          Length = 604

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 160/593 (26%), Positives = 275/593 (46%), Gaps = 20/593 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +++I+A   ++TR+ ++ D  + E   E    ++  GNIYLA+V RV PS+QAAFVD
Sbjct: 1   MAKEIIINA-EKDQTRIAIVEDGTLAEFYIEDPEHERTIGNIYLARVCRVMPSIQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHP------DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            G  +  FL F +I P       +   P    + L  E                H     
Sbjct: 60  IGQQQDAFLHFSDIAPSLPLQLKFLADPQPSVRKLAAEIEQHHQSLARRRHPRPHRADKS 119

Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
                 E     A+  +   +  +          ++            +      +    
Sbjct: 120 EASDEDETTEAAASSRRRRLDARLRGRRRSAQRRLQRKTAAETTTTEAEAAPHADVSPET 179

Query: 175 --KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
             K  Q LLV+I+KE   +KG+ V+T +SLAGR+ VL+P  +      +  +    R+  
Sbjct: 180 LLKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVAVSKKITSYKERRRL- 238

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL-ALNSVAPHLVYEE 291
                   +P G GVI+RT    +T   +  D   L+  W+ + +  A +   P L++E+
Sbjct: 239 -RALARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKPPVLLHED 297

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
            N++   IRDL+ +D + I+V   + +R  + +++ + P    +V+ Y     IF  +GI
Sbjct: 298 VNMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVAPHKVEVVQLYRGKEHIFKATGI 357

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
             Q+    ++ V LPS GY+ I  TEA+  IDVNSGR+ R    E+ +L+ NLEAA  IA
Sbjct: 358 AEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRAGRGLSQEENSLRVNLEAARVIA 417

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           +Q+R+RDL G+IV+DFID++++KN + V  +LK+  +KDRA  ++  +S+FGL++++RQR
Sbjct: 418 QQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPMSDFGLVQITRQR 477

Query: 472 IRSSVLESTTKVCTYCKGAGYIRS-------QSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +R S+  +  K+         I           ++  ++ R ++ Y       N+ +  H
Sbjct: 478 LRPSLTTTFDKMAER-LAREKILPPAPSQPTPEALLEAMERWLQAYRHAGGRRNVTLRVH 536

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
                YL  +       +  +  V + +          F  E  +  + L   
Sbjct: 537 PFTAAYLTRRVPTYPTRWLLKHLVRVRLESDPNQPPLSFRFEDPATGEDLTER 589


>gi|205353079|ref|YP_002226880.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272860|emb|CAR37787.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326628158|gb|EGE34501.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 1068

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|222148338|ref|YP_002549295.1| ribonuclease E [Agrobacterium vitis S4]
 gi|221735326|gb|ACM36289.1| ribonuclease E [Agrobacterium vitis S4]
          Length = 1035

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 340/604 (56%), Positives = 413/604 (68%), Gaps = 3/604 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHS---LEEVAPIANFSQETEEESIISANNDVVSN 148
              +A    E   D  ++G +    D      E  +   +   + +++            
Sbjct: 214 AEPVAVESDETPDDGSSNGSMAAMVDTDSISEETDSRHRHDDDDDDDDDDGEKEEIESVG 273

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
            ED     P+ V +  ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSV
Sbjct: 274 AEDAMEEVPDRVRRTPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSV 333

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           LMPNT++G  ISRKITNP DRK LKE+AR LEVP GMGVILRTAGA+RTK+E+KRDFEYL
Sbjct: 334 LMPNTARGGGISRKITNPADRKRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYL 393

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           MRLW+NVR L LNS AP LVYEEG+LIKR+IRDLY KDISEI+VSGE+GYREAKDFMK+L
Sbjct: 394 MRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKML 453

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           MPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGR
Sbjct: 454 MPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGR 513

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           STRE+ IEDTALQTNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK
Sbjct: 514 STREYSIEDTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLK 573

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
            DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC +C G G IRSQSSVAL +LR VE
Sbjct: 574 NDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLRGVE 633

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           EYLL+ T H+I V T  +  LYLLN KR +IV+YE RFGVSI +     +  + F I+KG
Sbjct: 634 EYLLKSTTHDITVRTLPETALYLLNHKRGSIVDYENRFGVSIIIDSDASVGHQHFAIDKG 693

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            PV   V     +   S+    D  IE   +D+  +     ++      N  +  +    
Sbjct: 694 EPVANPVRIETLLPLISEPEEDDPIIEIEEEDDEDVVEAPVQAQPASSGNAAANAAEDGN 753

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           RKR+RRRRRR    + H  G  +     +   D   +   E +     + +E        
Sbjct: 754 RKRKRRRRRRGKNGNGHADGQQNAAGGDEGDDDSEGEDDAEDTAEDRDDSVEASDASEDG 813

Query: 689 NYDV 692
           N + 
Sbjct: 814 NSES 817



 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 88/159 (55%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVTIPNDHS 119
           YGGNRHGFL F EIHPDYYQIP +DRQALLK          +   + V   D    +   
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEHGRHDDGDFEPVRSRDPGERDQPV 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
           + + A  AN ++E    ++  A++D      +    +P+
Sbjct: 121 IADPAEFANEAEEVAGLAVNQADDDHAQTTAEQPADAPQ 159



 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 7/147 (4%)

Query: 578  GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                   +  P   K        +A      ++S+E + +     E+  V          
Sbjct: 891  PATEAVKADEPVAAKPRRARK-PKASAKTEAADSVETVTEPAAVPEAVVVEAPAAAEPVA 949

Query: 638  RRPATDHHD-AGVVSDVSSIQNVID-DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
              P ++         DVS+ +  ++  + ++  EP  +++ +  +      + N   S P
Sbjct: 950  ASPVSEETSVPAPAQDVSAPEPAVEAPAPEVASEPEAVSDASAEKPVRANRSSNVSTSEP 1009

Query: 696  PVSTPEMESSNSSSDPIVKKTRWWKRR 722
             V++     +N    P  KK  WW++R
Sbjct: 1010 VVTSV----TNGEEAPKPKKGGWWQKR 1032


>gi|330815963|ref|YP_004359668.1| Ribonuclease E [Burkholderia gladioli BSR3]
 gi|327368356|gb|AEA59712.1| Ribonuclease E [Burkholderia gladioli BSR3]
          Length = 1114

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 189/451 (41%), Positives = 280/451 (62%), Gaps = 3/451 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +G  +SR+I
Sbjct: 83  DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR--ELALN 281
                ++ L+E    LE+P GM +I RTAG  R+  E++ D  YL++LW  +     + +
Sbjct: 143 EGDERQE-LRETMAQLEIPEGMSMIARTAGIGRSAEELQWDLNYLLQLWHAIEAASKSGH 201

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
           +  P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP     V++Y D
Sbjct: 202 NGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKVKRYHD 261

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T+   IE+TA +
Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK DRARVQ+G IS 
Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E  ++     I  
Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
               +V  +LLN+KR  I + E+RF V I ++    L    + +E+     A ++     
Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
              ++  + +   E  +   A    PK E+ 
Sbjct: 502 WKMAEEAARELESETGYSKRAADAKPKQEAA 532



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|54295136|ref|YP_127551.1| ribonuclease E [Legionella pneumophila str. Lens]
 gi|53754968|emb|CAH16456.1| Ribonuclease E [Legionella pneumophila str. Lens]
          Length = 663

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 204/646 (31%), Positives = 315/646 (48%), Gaps = 25/646 (3%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R AL+K + +   D E   +    G++        E           ++ +  +      
Sbjct: 15  RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
              +        ++ P        I  +I+  Q LL+Q+ KEERGNKGAA+TT+++LAG 
Sbjct: 75  PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMPN      ISR+I      + L+E    L +P  MG+I+RTAG  ++  E++ D 
Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             L   W +++E   + +AP L+++EG++I R+IRD   K ISEII+  +  Y +AK ++
Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           + + P +   ++ Y    P+F    IE Q+++ +Q +V LPS G ++I++TEALVSID+N
Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           S ++T    IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   KN R VE +LKE
Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+  ++C  C+G G +RS  S  LSI R
Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +EE  L+     I V    ++  +++N+KR  I + E R GVS+ V+    +    + I
Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +        +         Q   +    + E V  DE  +       +         + 
Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546

Query: 624 --------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                          T    K+  R + +        +G                    +
Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHPSSKSSGGDKRQQGSNANRRRRSGGGQQ 606

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            S   N N      H   +  + +     + +   S  + +   KK
Sbjct: 607 RSSSGNTNAA-ASTHQQRKKSNPNQQSHGSQQSNRSIPAKNEGNKK 651


>gi|307611135|emb|CBX00779.1| ribonuclease E [Legionella pneumophila 130b]
          Length = 663

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 204/646 (31%), Positives = 315/646 (48%), Gaps = 25/646 (3%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R AL+K + +   D E   +    G++        E           ++ +  +      
Sbjct: 15  RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
              +        ++ P        I  +I+  Q LL+Q+ KEERGNKGAA+TT+++LAG 
Sbjct: 75  PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMPN      ISR+I      + L+E    L +P  MG+I+RTAG  ++  E++ D 
Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             L   W +++E   + +AP L+++EG++I R+IRD   K ISEII+  +  Y +AK ++
Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           + + P +   ++ Y    P+F    IE Q+++ +Q +V LPS G ++I++TEALVSID+N
Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           S ++T    IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   KN R VE +LKE
Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+  ++C  C+G G +RS  S  LSI R
Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +EE  L+     I V    ++  +++N+KR  I + E R GVS+ V+    +    + I
Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +        +         Q   +    + E V  DE  +       +         + 
Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546

Query: 624 --------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                          T    K+  R + +        +G                    +
Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHPSSKSSGGDKRQQGSNANRRRRSGGGQQ 606

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            S   N N      H   +  + +     + +   S  + +   KK
Sbjct: 607 RSSSGNTNAA-ASTHQQRKKSNANQQSHGSQQSNRSIPAKNEGNKK 651


>gi|194290176|ref|YP_002006083.1| ribonuclease e [Cupriavidus taiwanensis LMG 19424]
 gi|193224011|emb|CAQ70020.1| Ribonuclease E [Cupriavidus taiwanensis LMG 19424]
          Length = 1031

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 204/563 (36%), Positives = 298/563 (52%), Gaps = 7/563 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L VP GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLTVPEGMSIIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A ++ AP L+Y E +L+ RAIRD +  DI EI++  ++ Y +A+ FM ++MP  
Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             +         ++A + +   +  +              E     I  E+   V   R 
Sbjct: 491 PRLEDSTASYKMAEAAAKELEADTSYSSR--RKEEAKPRQEAAVKGITPEQPAPVSVPRP 548

Query: 633 RRRRRRRPATDHHDAGVVSDVSS 655
            R  R   A           V +
Sbjct: 549 ERAPRPEAAPVAPPVPATKPVEA 571



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGN 110


>gi|168264022|ref|ZP_02685995.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347312|gb|EDZ33943.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 1067

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|198245804|ref|YP_002215952.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197940320|gb|ACH77653.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 1068

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|114331691|ref|YP_747913.1| ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91]
 gi|114308705|gb|ABI59948.1| RNAse E [Nitrosomonas eutropha C91]
          Length = 849

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 202/547 (36%), Positives = 296/547 (54%), Gaps = 12/547 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++    +   D E +  +    ++       LE           + E + +  
Sbjct: 11  PEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLE----------PSLEAAFVDY 60

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                  +   +           +  + I E+++  Q L+VQ+ K+ERGNKGAA+TTY+S
Sbjct: 61  GAGRHGFLPYKEIAPTCFDKNTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYIS 120

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +G  ISR+++     + L+E+   L+VP GM +I RTAG  R + E+
Sbjct: 121 LAGRYLVLMPNNPQGGGISRRVSAEERAE-LREVINHLQVPDGMSIIARTAGIGRNEEEL 179

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  YL++LW  +   A +     L+Y+E +L+ RAIRD +  +I EI++   + Y +A
Sbjct: 180 QWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQA 239

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
             FM  +MP+    ++ Y+D  P+F R  IE Q+++ +  +VTLPS G ++I+ TEALVS
Sbjct: 240 YQFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVS 299

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNS R+ R   IE+TAL TNLEAA+EIARQLRLRDL GL+VVDFIDME  +N R VE 
Sbjct: 300 IDVNSARAIRGSDIENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVET 359

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L ++L+ DRARVQ+G IS FGLLE+SRQR+R S+ E     C  C G G+IR   S AL
Sbjct: 360 NLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSAL 419

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR ++E  ++     + V    DV  +LLN+KR+ I   EAR  V I ++  I +   
Sbjct: 420 HILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETP 479

Query: 562 LFYIEKGSPVQALVNT-GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            + I +               G   +            + +A+ P      ++  Q   V
Sbjct: 480 NYTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPV 539

Query: 621 SEESTGV 627
            EE    
Sbjct: 540 PEEKPRE 546



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 53/74 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++   ++ ++D E+  K+Q K NIY A VTR+EPSL+AAFVDYG
Sbjct: 2  KRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHP 76
            RHGFLP+ EI P
Sbjct: 62 AGRHGFLPYKEIAP 75


>gi|297538697|ref|YP_003674466.1| Rne/Rng family ribonuclease [Methylotenera sp. 301]
 gi|297258044|gb|ADI29889.1| ribonuclease, Rne/Rng family [Methylotenera sp. 301]
          Length = 894

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 208/646 (32%), Positives = 307/646 (47%), Gaps = 25/646 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            ++    A+ D     D+ I +    +  + I        E S+ +A  D   +      
Sbjct: 10  QSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYGMDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  +     +    +  IQ+ +K  Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVARSYYKEGADGKSRIQDALKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I      + L+++   LEVP GM +I RTAG  R   E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEDRDE-LRDVLAQLEVPKGMSIIARTAGIGRNAEELQWDLNYLTQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   +      +L+Y+EG+L+ RAIRD +  DI EI++     + +A  FM  +MP 
Sbjct: 189 WTAIDGASAMQAGAYLIYQEGSLVIRAIRDYFSSDIGEILIDTPDIHEQAVQFMNHVMPG 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V+ Y+D  P+F R  IE Q++S    EV LPS G ++I+ TEALVS+DVNSGR+TR
Sbjct: 249 NVNRVKLYQDEIPLFTRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE TA  TN+EAAEE+ARQLRLRDL GL+V+DFIDME ++N R VE  L+++L  DR
Sbjct: 309 GSDIEHTAFNTNIEAAEEVARQLRLRDLGGLVVIDFIDMESQRNQREVENALRDALHVDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ G IS FGLLE+SRQR+R S+ E+    C  C G G+IR   S AL ILR  +E  
Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGETNHIPCPRCSGTGHIRGIESTALHILRITQEDA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  I V    +V  +LLN+KRA I + E R GV + ++  I L    + I +    
Sbjct: 429 MKENSAIIQVQLPVEVATFLLNEKRADIHKIEQRMGVEVVLIPNIHLETPNYNIVRIKHD 488

Query: 572 QALVNTGHKVGSDSQAPSY----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                T        + P+         E       +  +               E     
Sbjct: 489 DVNEETNRASYKLVEMPAETTFIPTAEETAKAVRPVAAVKGITPAAPAPIVAEKEAEVVA 548

Query: 628 IRKRR----------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
             K                     +      +        +  +  N   +  +    P 
Sbjct: 549 APKLSFFAKIKNFFVSTPTAVEAPKTEAEKAEDTRRENNRNNRNRNNRNRNERNRGDRPE 608

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              N        +    +     P    P+   +  +     +  +
Sbjct: 609 KDVNRA-NRPNENARPADAKPQEPRQQKPQQAKNEQARPDQNRNDK 653



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD E   K+Q K NIY   +TR+EPSL+AAFVDYG
Sbjct: 2   KRMLFNATQSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   YY+   +D ++ ++++     +     D    G+
Sbjct: 62  MDRHGFLPFKEVARSYYK-EGADGKSRIQDALKEGQELIVQVDKDERGN 109


>gi|200390327|ref|ZP_03216938.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602772|gb|EDZ01318.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1068

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254362479|ref|ZP_04978587.1| ribonuclease E [Mannheimia haemolytica PHL213]
 gi|153094071|gb|EDN74983.1| ribonuclease E [Mannheimia haemolytica PHL213]
          Length = 977

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 203/655 (30%), Positives = 320/655 (48%), Gaps = 35/655 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++I+  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPSDYVFNGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ +C  C+G G +R   S+ALSILR +EE  
Sbjct: 368 ARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V I VV    +    F + +    
Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLREN 487

Query: 572 QALVNTGHKVGS-------------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           +      + +                 Q        E V   E++L   +          
Sbjct: 488 EITPTLSYDLTKHYEARHEEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPT 547

Query: 619 IVSEES-------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
              + S             +    + + + + R            +  +  +N    +  
Sbjct: 548 EPPKPSLLSRLIATIKGWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQ 607

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTR 717
               P++       +       E         S     E+++       + KK R
Sbjct: 608 AQTTPAEEKPMRSEKKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVR 662



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|161614590|ref|YP_001588555.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161363954|gb|ABX67722.1| hypothetical protein SPAB_02340 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1067

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 192/620 (30%), Positives = 305/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++           G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAVAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|148262384|ref|YP_001229090.1| ribonuclease [Geobacter uraniireducens Rf4]
 gi|146395884|gb|ABQ24517.1| RNAse G [Geobacter uraniireducens Rf4]
          Length = 503

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 169/565 (29%), Positives = 275/565 (48%), Gaps = 65/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N+++I+ +   ETR+ ++ +  + EL  E    K I GNIY  +V RV P +QA    
Sbjct: 1   MGNELVINTT-SHETRIALIENGTIAELYIERSRVKGIVGNIYKGRVIRVLPGMQA---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                                +         D   
Sbjct: 56  ---------AFVDIG-------------------------------LEKAAFLYVADVFD 75

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 +      +++        V+  +  ++                    ++  Q L
Sbjct: 76  AMDEYESFMDGNGKKDEPAEGEEPVIHPLHPIEEL------------------LQEGQEL 117

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQI KE  G KGA +T ++SL GR+ V MP       ISR+I +  +R+ LKEI   ++
Sbjct: 118 LVQISKEPIGTKGARITAHISLPGRHLVYMPTVDHVG-ISRRIEDEAERERLKEIVDRIK 176

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G G I+RT    +++ ++  D  YL +LWD V +    + AP L++ + ++ ++ +R
Sbjct: 177 PP-GGGFIVRTVSEGKSEEDLVSDLHYLTKLWDEVVKRKDKASAPSLIHSDLDVTQKVVR 235

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  + +  I+V  +  Y     F+   MP     +  Y++  PIF   G+EV++     
Sbjct: 236 DILTESVERIVVDFKPEYDRIVQFISTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 295

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR+L 
Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 355

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+E++K D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 356 GIIIIDFIDMEKEVNREKVFTALEEAVKSDKSKTNILKISELGLVEMTRKRVRESIGRMM 415

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+++V   I R +   +L      I++  H  V   L +++R  + 
Sbjct: 416 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKIMLTVHPQVADLLYDEERRGLE 475

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E  F   I V        + F I
Sbjct: 476 ELEKNFKKRITVRAKPGFHQEQFEI 500


>gi|217976915|ref|YP_002361062.1| ribonuclease, Rne/Rng family [Methylocella silvestris BL2]
 gi|217502291|gb|ACK49700.1| ribonuclease, Rne/Rng family [Methylocella silvestris BL2]
          Length = 1080

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 288/595 (48%), Positives = 383/595 (64%), Gaps = 8/595 (1%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
           +D               E  A        ++  D   E  +   +  +          + 
Sbjct: 257 ADSHESGAYEEQPAPLFETGAAAPYAEAASVSLDEPDEAPSGQGSVVEARRSSESDEESE 316

Query: 144 DVVSNVEDVKGGSPED---VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
           +   +VE + G + E+    P++++RQY IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYL
Sbjct: 317 EEDEHVEQLGGDAMEEVPVRPQRYRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYL 376

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGRYSVLMPNT++G  ISRKIT+  DR+ LK IA+ LEVP GMGVILRTAGASRTK E
Sbjct: 377 SLAGRYSVLMPNTARGGGISRKITDSTDRQRLKSIAQELEVPEGMGVILRTAGASRTKPE 436

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           +KRDFEYL+R+W+ VRE  L S AP LVYEEG+LIKRAIRDL+ KDI +I+V+G+KGYRE
Sbjct: 437 VKRDFEYLLRMWETVRETTLKSSAPTLVYEEGSLIKRAIRDLFNKDIDDIVVAGDKGYRE 496

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           A+DFM+LLMPS+   V+ Y D  PIF +S +E QLD++   +VTL S GY++INQTEALV
Sbjct: 497 ARDFMRLLMPSHVNSVQPYRDAQPIFSKSDVETQLDAMFLNQVTLKSGGYIVINQTEALV 556

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVNSGRSTREH IEDTAL+TNLEAA+E+ARQLRLRDLAGLIVVDFIDMEE +NNR+VE
Sbjct: 557 AIDVNSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVE 616

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++LK++LK DRAR+QVG IS+FGLLEMSRQRIR+ VLE +T++C +C G+G +RS +S+A
Sbjct: 617 RRLKDALKNDRARIQVGRISHFGLLEMSRQRIRTGVLEGSTELCPHCSGSGILRSTASIA 676

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           L +LR  E+ LL+  +H++I+ T S V LY+LN+KRA + + E RFGV++++ +   L  
Sbjct: 677 LHVLRVAEDALLKSASHDLIIRTRSAVALYILNEKRAHLRDLERRFGVAVSIEVDDSLIG 736

Query: 561 KLF-YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            ++  +E+G P             +              +D A    P+ E+ E   ++ 
Sbjct: 737 SVYHAMERGEPASGGHEPIELAAPEP----AQIAARDFVEDAAPGFAPEDEAPEGAAEDG 792

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
             ++  G    R                                     +PSD  
Sbjct: 793 DEDQEPGDANARGEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANAPQPSDDA 847



 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 99/192 (51%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASH EETRVVVLR NRVEE DFES  KKQ++GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP  DRQAL++E   AQ       +               
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQQREADDEESSPRRSRRHRRGDRN 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                          E        +    E     + +    +       +   +  +  
Sbjct: 121 GGDRSGNGDRNGKRAEKRSGDAETLSEPYEASSEETQQFDAAQDDAGSPNRNEARGEEHA 180

Query: 181 LVQIVKEERGNK 192
             +   E +  +
Sbjct: 181 GERFEAEAQDRR 192


>gi|148359834|ref|YP_001251041.1| ribonuclease E [Legionella pneumophila str. Corby]
 gi|296107882|ref|YP_003619583.1| Ribonucleases G and E [Legionella pneumophila 2300/99 Alcoy]
 gi|148281607|gb|ABQ55695.1| ribonuclease E [Legionella pneumophila str. Corby]
 gi|295649784|gb|ADG25631.1| Ribonucleases G and E [Legionella pneumophila 2300/99 Alcoy]
          Length = 663

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 205/647 (31%), Positives = 317/647 (48%), Gaps = 27/647 (4%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R AL+K + +   D E   +    G++        E           ++ +  +      
Sbjct: 15  RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
              +        ++ P        I  +I+  Q LL+Q+ KEERGNKGAA+TT+++LAG 
Sbjct: 75  PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMPN      ISR+I      + L+E    L +P  MG+I+RTAG  ++  E++ D 
Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             L   W +++E   + +AP L+++EG++I R+IRD   K ISEII+  +  Y +AK ++
Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           + + P +   ++ Y    P+F    IE Q+++ +Q +V LPS G ++I++TEALVSID+N
Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           S ++T    IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   KN R VE +LKE
Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+  ++C  C+G G +RS  S  LSI R
Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +EE  L+     I V    ++  +++N+KR  I + E R GVS+ V+    +    + I
Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +        +         Q   +    + E V  DE  +       +         + 
Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546

Query: 624 ---------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
                          +    +K  R + + + A+     G      S  N    S     
Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHASSKSSGGDKRQQGSNANRRRRSGGGQQ 606

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             S    +       H   +  + +       +   S  + +   KK
Sbjct: 607 RSSSGNTNAAA--STHQQRKKSNPNQQSHGGQQSNRSIPAKNEGNKK 651


>gi|50120722|ref|YP_049889.1| ribonuclease E [Pectobacterium atrosepticum SCRI1043]
 gi|49611248|emb|CAG74694.1| ribonuclease E [Pectobacterium atrosepticum SCRI1043]
          Length = 1094

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 207/676 (30%), Positives = 312/676 (46%), Gaps = 64/676 (9%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A    AP L+++E N+I RA RD   +DI EI++   K    AK+ +  L  P
Sbjct: 191 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKILELAKEHISALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++S+++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQTPHYSVVRVR 490

Query: 570 PVQALVNTGH-----------------------------------KVGSDSQAPSYDKNI 594
             +      +                                   ++  ++  P      
Sbjct: 491 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETTPPVAKAAP 550

Query: 595 ECVWQDEALLP---------------IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           +     E   P                  +    D  D    EE      +R  RR  RR
Sbjct: 551 DVAKAAEEAQPGLISRFFSALKGVFASEPAAKAVDSVDEKKVEEEKAGEGQRSERRNPRR 610

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
              +  D G        +   D   +       +    + EN     +E      P    
Sbjct: 611 QGNNRRDRGSR------EQRDDQRRNKRQTEEVVAETRVAENVEKADSEEQPRREPRAER 664

Query: 700 PEMESSNSSSDPIVKK 715
                      P+ +K
Sbjct: 665 QRRRQDERRQAPVEEK 680



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|83748465|ref|ZP_00945487.1| Ribonuclease E [Ralstonia solanacearum UW551]
 gi|207743613|ref|YP_002260005.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum IPO1609]
 gi|83724876|gb|EAP72032.1| Ribonuclease E [Ralstonia solanacearum UW551]
 gi|206595012|emb|CAQ61939.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum IPO1609]
          Length = 1018

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 197/529 (37%), Positives = 292/529 (55%), Gaps = 5/529 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R+  E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V   A+++ AP L+Y E +L+ RAIRD +  DI EI++  +  Y +A+ FM ++MP  
Sbjct: 191 KAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALV++DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             ++        ++  + +   +  +        P+ E+          
Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAVKPRQEAAVKGITPEQP 539



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110


>gi|16760062|ref|NP_455679.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29142167|ref|NP_805509.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213163778|ref|ZP_03349488.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|289829595|ref|ZP_06547150.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25289275|pir||AC0641 ribonuclease E (EC 3.1.4.-) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502356|emb|CAD08310.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137796|gb|AAO69358.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 1067

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 193/623 (30%), Positives = 306/623 (49%), Gaps = 12/623 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSSSDP 711
               +    +       N +   
Sbjct: 608 PRQNNRRDRNERRDTRDNRARRD 630



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|325275826|ref|ZP_08141691.1| ribonuclease E [Pseudomonas sp. TJI-51]
 gi|324099045|gb|EGB97026.1| ribonuclease E [Pseudomonas sp. TJI-51]
          Length = 510

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 212/500 (42%), Positives = 298/500 (59%), Gaps = 4/500 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKTPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL VP  MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++       EA  F++ +MP YA
Sbjct: 188 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E L+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 487

Query: 574 LVNTGHKVGSDSQAPSYDKN 593
            V         + + + +  
Sbjct: 488 EVLNNQSSYEIAASETEEAP 507



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKTPEGRVNIKEVLSEGQEVIVQVEKEE 103


>gi|120609861|ref|YP_969539.1| ribonuclease E [Acidovorax citrulli AAC00-1]
 gi|120588325|gb|ABM31765.1| RNAse E [Acidovorax citrulli AAC00-1]
          Length = 1040

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 188/542 (34%), Positives = 281/542 (51%), Gaps = 4/542 (0%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             Q  I +VI+  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP +
Sbjct: 191 TAIDGAARGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMSHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D   +F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AAKVKRYRDDAALFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA
Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ G IS FGL+EMSRQR++ S+ E     C  C G G++R     +L ILR ++E  +
Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPRCDGTGHVRDTEGFSLQILRMIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      +V  +LLN+KR  I + E +  VS+ +V    +    + +E+     
Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKTMETPKYKLERLKHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
             ++        ++       +    Q+      P  +               E      
Sbjct: 491 PRLDHIAASYKLAEEMEDPTTVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPEMPRTAG 550

Query: 630 KR 631
            R
Sbjct: 551 AR 552



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGN 110


>gi|167623697|ref|YP_001673991.1| ribonuclease [Shewanella halifaxensis HAW-EB4]
 gi|167353719|gb|ABZ76332.1| ribonuclease, Rne/Rng family [Shewanella halifaxensis HAW-EB4]
          Length = 1099

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 213/648 (32%), Positives = 327/648 (50%), Gaps = 26/648 (4%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +       
Sbjct: 20  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLP 79

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EVIK  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 80  LKEIAREYFPKGYSFQGRPSIKEVIKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 139

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     LEVP GMG+I+RTAG  +   E+K D + L 
Sbjct: 140 MPNNPRAGGISRRIEGDERTE-LKAALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQ 198

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  ++E A ++ AP L+++E N+I RAIRD   +D+ EI++   + Y +AK+ + L+ 
Sbjct: 199 HHWAAIKEAAESAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVR 258

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   +++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 259 PDFVERIKRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 318

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VEK++++++  
Sbjct: 319 TKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHH 378

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 379 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 438

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 439 EAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEKRHNVEVYVIPDPNMTTPDYRVVRHR 498

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIEC--------------------VWQDEALLPIPKS 609
               +  + +K+    +A  Y+                         V    A   I + 
Sbjct: 499 KDDEISESSYKLLEKEEAKLYEPRKLERAATPQPALKGFSTPKQAPVVETKPAAPKIEEP 558

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                I   I S   +    K   +++ +       +    ++        + + +    
Sbjct: 559 GLFAKIAAAISSLFGSKEEPKTEPKKQDKDSRNQGRNNNRRNNNRRNDPRRNRNDNRSDS 618

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +D  N +         +   D S   + T +       ++ + K T+
Sbjct: 619 RNDSRNDSEQSKDKRAKSSRSDSSDTRLPTEDTNKRQPRNEKVRKDTK 666



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 12  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 71

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y      +Q   S ++ + +   +     +    + 
Sbjct: 72  AERHGFLPLKEIAREYFPKGYSFQGRPSIKEVIKEGQEVIVQIDKEERGNK 122


>gi|238910995|ref|ZP_04654832.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 1068

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 193/597 (32%), Positives = 306/597 (51%), Gaps = 10/597 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST-GV 627
             +      + +     +A +     E   +     P   + ++ D+       E    V
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
              ++      +PA     +  ++ +  + +  +        P         ++   
Sbjct: 551 ATAKKDNVAAAQPAQPGLFSRFLNALKELFSGEETKTVETAAPKAEEKAERQQDRRK 607



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|73541962|ref|YP_296482.1| RNAse E [Ralstonia eutropha JMP134]
 gi|72119375|gb|AAZ61638.1| RNAse E [Ralstonia eutropha JMP134]
          Length = 1042

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 203/542 (37%), Positives = 297/542 (54%), Gaps = 7/542 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ +   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L+VP GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMSQLQVPDGMSIIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A ++ AP L+Y E +L+ RAIRD +  DI EI++  ++ Y +A+ FM ++MP  
Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+T+ 
Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME  K  + VE +LK++L+ DRA
Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     I      +V  +LLN+KR  I   E RF V++ ++    L    + +E+     
Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             +  G      ++A + +   +  +   A          E     I  E+   V   R 
Sbjct: 491 PRLEEGMASYRMAEAAAKELEADTSY--SARKKEDAKPRQEAAVKGITPEQPAPVSVPRP 548

Query: 633 RR 634
            R
Sbjct: 549 ER 550



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGN 110


>gi|325105837|ref|YP_004275491.1| ribonuclease, Rne/Rng family [Pedobacter saltans DSM 12145]
 gi|324974685|gb|ADY53669.1| ribonuclease, Rne/Rng family [Pedobacter saltans DSM 12145]
          Length = 516

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 145/575 (25%), Positives = 249/575 (43%), Gaps = 61/575 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I+++    T + +++D ++ EL+ E  +     G+IYL ++ ++ P L AAFVD
Sbjct: 1   MVKELIINSAPGGVT-IALVQDKQLVELNKEQINNNYAVGDIYLGRIKKIMPGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P          Q+LLK +  A+                       
Sbjct: 60  VGYEKDAFLHYLDLGPQ--------VQSLLKLTRQAR----------------------- 88

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                     +        S     +   +   I  ++    +L
Sbjct: 89  --------------------------NGNFTDYLLSSFKREEDIDKSGKISTILSKDLLL 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            VQI KE    KG  +++ LS+AGR+ VL+P +       +  +N    +  K       
Sbjct: 123 PVQIAKEPISTKGPRLSSDLSIAGRFVVLVPFSDVISISKKIKSNTERTRLRK--IVEGI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G G+I+RT    +   EI++D   L+  W+ + +    +     +  E       +R
Sbjct: 181 KPKGFGIIIRTVSEKKGVAEIQKDILDLVSKWETLMKKIPKTGPAKRILGEMGRTSTILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   D + + V     + E K ++  + P    IV+ Y+   PIF   G+E Q+ +   
Sbjct: 241 DILNADFTHVYVDDPALFEEVKSYVHEISPEMESIVKLYKGKEPIFEHFGLEKQIKASFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V L    Y++I  TEAL  IDVNSG  T      E+ ALQ N EAA+EIARQLRLRD+
Sbjct: 301 KTVNLAGGAYLVIEHTEALHVIDVNSGNRTANPENQEENALQVNKEAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G++V+DFIDM +  N + +   LK  +  DRA+  +   S FGL++++RQR+R  +   
Sbjct: 361 GGIVVIDFIDMHKAPNRKELFDFLKTEMSHDRAKHTILPPSKFGLVQITRQRVRPEMNIV 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T++ C  C G G I++   +   I  ++   L +     I +  H  V  ++     +  
Sbjct: 421 TSEKCPTCGGTGEIKASIVLIDDIENNLNYILNEQAEKGITLAVHPYVEAFIKRGFLSKQ 480

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           V++  ++G  + V          F        +  
Sbjct: 481 VKWFFKYGQWVKVKGITSYHLTEFAFMNNKEEEIK 515


>gi|319779242|ref|YP_004130155.1| Ribonuclease E [Taylorella equigenitalis MCE9]
 gi|317109266|gb|ADU92012.1| Ribonuclease E [Taylorella equigenitalis MCE9]
          Length = 963

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 200/569 (35%), Positives = 302/569 (53%), Gaps = 14/569 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
                +  K       I E ++  Q L++Q+ KEERGNKGAA+TTY+SLAGRY VLMPN 
Sbjct: 68  KEVSRNYHKSGTDHSRISEALEVGQELIIQVEKEERGNKGAALTTYISLAGRYLVLMPNN 127

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            KG  ISR+  +  +R+ L+E    LE+P GM +I RTAG  RT  E+  D  YLM+LW 
Sbjct: 128 PKGGGISRR-IDWEERQELREAMSHLELPEGMSLIARTAGIGRTTEELNWDLTYLMQLWK 186

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + + A +  AP L+Y+E +L+ RA+RD +  DI+EI++  ++ Y +   FM+ +MP   
Sbjct: 187 AIEDAANHYSAPILIYQESSLVIRALRDYFSHDITEILIDTDEIYDQVNAFMQDVMPDNV 246

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             +++Y    P+F R  +E Q+++ +   V LPS G ++I+ TEALV++DVNS RSTR  
Sbjct: 247 AKIKRYRHAVPLFSRFQVEHQIETAYSRHVHLPSGGSIVIDHTEALVAVDVNSARSTRGG 306

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TA++TN+EAAEE+ARQLRLRDL GLIV+DFIDME+ KN ++VE KLKE+++ DRAR
Sbjct: 307 DIEETAMRTNIEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQKAVESKLKEAIQFDRAR 366

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGL+E+SRQR+R S+ E +  +C  C G G IR   S AL++LR ++E  L+
Sbjct: 367 VQMGKISKFGLMELSRQRLRPSLNEGSHIICPRCNGTGAIRDIESSALNVLRLLQEEALK 426

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +      DV  YLLN+KR  IV+ EA+  + I ++    L    + IE+    ++
Sbjct: 427 ENTAVVNAQVPVDVATYLLNEKRQDIVKMEAKNQIRIYLIPSKNLETPHYNIERIRHDES 486

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR- 632
            ++        +     +       +D+   P    + +            T        
Sbjct: 487 RMDELPVSYKLTDDSIEEIPSWQEKKDQPKAPEAVVKGIRRQTPAPTPSPKTKETNSTEL 546

Query: 633 ------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                        R+ +    T        +  S  +     +           N  +  
Sbjct: 547 TFWQKILSFFGFARKDQTPEITQTPKVKTPASKSCRKPHSSKTHKSQNHKKSSNNDEIEL 606

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSS 709
             +   ++    S    + P    S  +S
Sbjct: 607 KASPSASKTKSDSERLRNKPRKAKSEENS 635



 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 55/76 (72%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML +A+H EE RV ++   ++ ++D E+  ++Q KGNIY   +TR+EPSL+A FVDYG  
Sbjct: 1  MLFNATHQEELRVAIVDGQKLLDIDIETSGREQRKGNIYKGVITRIEPSLEACFVDYGQE 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          RHGFLPF E+  +Y++
Sbjct: 61 RHGFLPFKEVSRNYHK 76


>gi|56413828|ref|YP_150903.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362751|ref|YP_002142388.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56128085|gb|AAV77591.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094228|emb|CAR59733.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 1067

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSS 708
               +    +       N +
Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|315179569|gb|ADT86483.1| ribonuclease E [Vibrio furnissii NCTC 11218]
          Length = 1044

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 201/647 (31%), Positives = 319/647 (49%), Gaps = 26/647 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSVNHIERTQDVKITVVPNSDMETPHFEVVRVRDG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      +           +   E   ++     +      E +     +   T      
Sbjct: 488 EEQNILSYL-----IPRKLEAMKEAEGKEPTETEVKPKRIEEPVLKGFAAPAQTAPAPAP 542

Query: 632 RRRRRRRRPAT-DHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENG-- 682
             + +  +P        G+        +            +   +P    N +  ++   
Sbjct: 543 TPKPQVEQPQEVKEEKPGLFGRFLKALSGLFAAPAEAPKKEEQDQPKAKGNDDRNKSSQP 602

Query: 683 ------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                     + + +   P     E  + N ++D     +R  + RK
Sbjct: 603 RRERNDRRRNSRDKNKRKPNDDAKERTNENKAADKDAPNSRKQQERK 649



 Score =  124 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEER 106


>gi|170726385|ref|YP_001760411.1| ribonuclease [Shewanella woodyi ATCC 51908]
 gi|169811732|gb|ACA86316.1| ribonuclease, Rne/Rng family [Shewanella woodyi ATCC 51908]
          Length = 1142

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 205/645 (31%), Positives = 320/645 (49%), Gaps = 21/645 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+K  Q +++QI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVVIQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     LEVP GMG+I+RTAG  +   E+K D + L+
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLV 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  ++E A +  AP L+++E N+I RAIRD   +D+ E+++   + + +AK  + L+ 
Sbjct: 189 HHWAAIKEAADSRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVSLVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   ++QYE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVDRIKQYEAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVSRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +  + +K+    +A  Y+    E     +  L    +          V+ +     
Sbjct: 489 KDDQISESSYKLLDKPEAKLYEPRKLERAAPPQPALKGFSAPKKSIEATPSVAAKPAVKD 548

Query: 629 RKRR--------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                             +   ++        +G  +   + +     +     +  + +
Sbjct: 549 SNEPGLISKFLSAIGALFKSEEKKEEPKKPQQSGRNNQNKNARRNTRRNDRRPRDDKEQS 608

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
                 N  +   +N D +    ++ + +          K  R  
Sbjct: 609 GEKRERNPRNSRNKNADSNKENRASKDRDEQAKRQPRNSKSNRNQ 653



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|126442124|ref|YP_001059823.1| ribonuclease E [Burkholderia pseudomallei 668]
 gi|126221617|gb|ABN85123.1| ribonuclease E [Burkholderia pseudomallei 668]
          Length = 1088

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|124385225|ref|YP_001028741.1| ribonuclease E [Burkholderia mallei NCTC 10229]
 gi|254357684|ref|ZP_04973957.1| ribonuclease E [Burkholderia mallei 2002721280]
 gi|262193301|ref|YP_001081353.2| ribonuclease E [Burkholderia mallei NCTC 10247]
 gi|124293245|gb|ABN02514.1| ribonuclease E [Burkholderia mallei NCTC 10229]
 gi|148026811|gb|EDK84832.1| ribonuclease E [Burkholderia mallei 2002721280]
 gi|261835048|gb|ABO04992.2| ribonuclease E [Burkholderia mallei NCTC 10247]
          Length = 1087

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|326316003|ref|YP_004233675.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372839|gb|ADX45108.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 1039

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 188/542 (34%), Positives = 281/542 (51%), Gaps = 4/542 (0%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             Q  I +VI+  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP +
Sbjct: 191 TAIDGAARGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMSHVMPEH 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D   +F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ + 
Sbjct: 251 AAKVKRYRDDAALFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L+ DRA
Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ G IS FGL+EMSRQR++ S+ E     C  C G G++R     +L ILR ++E  +
Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPRCDGTGHVRDTEGFSLQILRMIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +      +V  +LLN+KR  I + E +  VS+ +V    +    + +E+     
Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKTMETPKYKLERLKHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
             ++        ++       +    Q+      P  +               E+     
Sbjct: 491 PRLDHIAASYKLAEEMEDPTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPETPRTAG 550

Query: 630 KR 631
            R
Sbjct: 551 PR 552



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGN 110


>gi|304397212|ref|ZP_07379091.1| ribonuclease, Rne/Rng family [Pantoea sp. aB]
 gi|304355361|gb|EFM19729.1| ribonuclease, Rne/Rng family [Pantoea sp. aB]
          Length = 1150

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 191/540 (35%), Positives = 287/540 (53%), Gaps = 9/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALDLPEGMGLIVRTAGVGKSAESLQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A N  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+D+IDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +        +     E   +     P   +  + D     V  E     
Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPAPVEVEPEAQR 550



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|260767404|ref|ZP_05876342.1| ribonuclease E [Vibrio furnissii CIP 102972]
 gi|260617639|gb|EEX42820.1| ribonuclease E [Vibrio furnissii CIP 102972]
          Length = 1047

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 202/647 (31%), Positives = 320/647 (49%), Gaps = 26/647 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSVNHIERTQDVKITVVPNSDMETPHFEVVRVRDG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      +           +   E   ++     +      E +     +   T      
Sbjct: 488 EEQNILSYL-----IPRKLEAMKEAEGKEPTETEVKPKRIEEPVLKGFAAPAQTAPAPAP 542

Query: 632 RRRRRRRRPAT-DHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENG-- 682
             + +  +P        G+        +            +   +P    N +  ++   
Sbjct: 543 TPKPQVEQPQEVKEEKPGLFGRFLKALSGLFAAPAEAPKKEEQDQPKAKGNDDRNKSSQP 602

Query: 683 ------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                     + + +   P   T E  + N ++D     +R  + RK
Sbjct: 603 RRERNDRRRNSRDKNKRKPNDDTKERTNENKAADKDAPNSRKQQERK 649



 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEER 106


>gi|220934526|ref|YP_002513425.1| ribonuclease E [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995836|gb|ACL72438.1| ribonuclease E [Thioalkalivibrio sp. HL-EbGR7]
          Length = 938

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 211/581 (36%), Positives = 293/581 (50%), Gaps = 33/581 (5%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           Q  I++++K    L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +   +SR+I   
Sbjct: 88  QGSIKDLVKEGMELIVQVEKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGVSRRIEGE 147

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
              + ++E    LEVP GMG+I RTAG  R   E++ D EYL  LW  + E A     P 
Sbjct: 148 DRSE-IREALSQLEVPQGMGLIARTAGVGRGVEELQWDLEYLKTLWAAITEAAEKRKGPF 206

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y+E N+I RA+RD    DI+EIIV     Y++A++FM+ +MP+  R ++ YE+  P+F
Sbjct: 207 LIYQESNVIIRALRDHLRNDIAEIIVDVPAVYQQAQEFMQQVMPNNLRKLKLYEEHVPLF 266

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
            R  IE Q+++  Q EV+LPS G ++I+ TEAL+SIDVNS R+T+   IE+TAL TNLEA
Sbjct: 267 NRYQIESQIEAAFQREVSLPSGGAIVIDHTEALISIDVNSARATKGSDIEETALNTNLEA 326

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+EIARQLRLRDL GLIV+DFIDM   KN R VE +L+++L+ DRARVQVG IS FGLLE
Sbjct: 327 ADEIARQLRLRDLGGLIVIDFIDMGPAKNQREVENRLRDALEMDRARVQVGRISRFGLLE 386

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           MSRQR+R S+ ES+  VC  C G G+IRS  S+ALS+LR +EE  ++     ++     D
Sbjct: 387 MSRQRLRPSLGESSQIVCPRCSGHGHIRSVESLALSVLRLIEEEAMKDKTGRVLAQLPVD 446

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV----------- 575
           V  +LLN+KR  +   E R  V + +V   ++    F + +    +              
Sbjct: 447 VATFLLNEKRDAVNGIERRHDVMVTLVPTPDMVTPHFNVRRIRMDEMPEELRGKSSYQML 506

Query: 576 -NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD----------------- 617
                      +  S       V       P P S    +                    
Sbjct: 507 PEEELPEPITVRPVSAPVERAAVQTIRPATPAPVSPEPVEAPARAQVPVAQPGFFARIWS 566

Query: 618 ---NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                          +  + R RR            S+          S        D  
Sbjct: 567 SLFAGAPRSEAETEIEESKSRARRSSTGRGGRDARDSEAERGGRGRRRSSTRDRRREDAG 626

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                 +      E      P           +   P  +K
Sbjct: 627 EGRPRPSQDKPAQERPAPEKPAAEKAPAAEKPAIEKPAREK 667



 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 51/72 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+  EE RV ++   ++ +LD E   ++Q K N+Y A VTRVEPSL+AAFV+YG
Sbjct: 2  KRILINATQPEELRVAMVDGQKLYDLDIEVPSREQKKANVYKAVVTRVEPSLEAAFVNYG 61

Query: 63 GNRHGFLPFLEI 74
            RHGFLP  EI
Sbjct: 62 AERHGFLPLKEI 73


>gi|88810810|ref|ZP_01126067.1| RNase E [Nitrococcus mobilis Nb-231]
 gi|88792440|gb|EAR23550.1| RNase E [Nitrococcus mobilis Nb-231]
          Length = 910

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 202/547 (36%), Positives = 313/547 (57%), Gaps = 10/547 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+   ++   D E  A +    ++       +E     A             A
Sbjct: 8   PEELRVALVDGQSLYDLDIETPARERKKANIYKGKITRVEPSLEAAFV--------QYGA 59

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                   +++  G  +        +  I+E I+  Q L+VQ+ KEERGNKGAA+TT++S
Sbjct: 60  ERHGFLPFKEIARGYFQTEEDADLTKISIKEAIREGQELVVQVDKEERGNKGAALTTFIS 119

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +   +SR+I        +++  R L+VP GMG+I+RTAG  R+  E+
Sbjct: 120 LAGRYLVLMPNNPRAGGVSRRIEGQDR-NEIRDALRSLDVPEGMGLIVRTAGVGRSVEEL 178

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D +YL+ LW ++++ A    AP L+Y+E N+I RA+RD    DI+EI+V     Y +A
Sbjct: 179 QWDLDYLLNLWMSIQKAAAERNAPLLIYQESNVIIRALRDYLRNDIAEILVDDPDVYEQA 238

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F++ +MP     ++ Y+D  P+F R  +E Q++S  Q E+ LPS G ++I++TEAL+S
Sbjct: 239 KGFIQQVMPHNLAKLKPYQDNVPLFTRYQLESQIESAFQREIRLPSGGAIVIDRTEALIS 298

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NS R+T+   IE+TALQTN EAA+E+ARQLRLRDL GLIVVDFIDM   +N R VE 
Sbjct: 299 IDINSSRATKGADIEETALQTNNEAADEVARQLRLRDLGGLIVVDFIDMGANRNQREVEN 358

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +L+E++K DRARVQVG IS FGLLEMSRQR+ +S+ ES+ +VC+ C G G +R   S+AL
Sbjct: 359 RLREAVKMDRARVQVGRISRFGLLEMSRQRLHTSLGESSQEVCSRCGGRGTVRGVESLAL 418

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           ++LR +EE  ++   H ++     +V  +LLN+KR+ +   E R GV I ++    L   
Sbjct: 419 AVLRIIEEEAMKEKTHKVLAQLPIEVATFLLNEKRSVLSATEQRNGVEITLIPNKTLETP 478

Query: 562 LFYIEKGSPVQA-LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            + I++          + +++ + +      + +      +  +  P  + L+ +    +
Sbjct: 479 HYEIQRIRTDDRTAEGSSYQLVAKTPQGKLAEQLVAAATQKPRIEEPVVKHLKPLTPAPL 538

Query: 621 SEESTGV 627
             +    
Sbjct: 539 PLQMKNS 545



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++    + +LD E+  +++ K NIY  K+TRVEPSL+AAFV YG  
Sbjct: 1   MLINATQPEELRVALVDGQSLYDLDIETPARERKKANIYKGKITRVEPSLEAAFVQYGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPF-SDRQAL-LKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF EI   Y+Q    +D   + +KE+     +     D    G+
Sbjct: 61  RHGFLPFKEIARGYFQTEEDADLTKISIKEAIREGQELVVQVDKEERGN 109


>gi|260912695|ref|ZP_05919181.1| ribonuclease E [Pasteurella dagmatis ATCC 43325]
 gi|260633073|gb|EEX51238.1| ribonuclease E [Pasteurella dagmatis ATCC 43325]
          Length = 986

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 193/631 (30%), Positives = 312/631 (49%), Gaps = 19/631 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPDDYVYQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+    LEVP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++  +K Y +AK  +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSQKVYEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE ++++++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +      ++  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 LKENTKQVHTIVPVEIASYLLNEKRRAINNIEKRHDVDVIVVPNEAMETPHFSVFRVRDG 490

Query: 572 QALVNTGHKVG----------SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
           + +    + +              ++             E++L              +  
Sbjct: 491 EEVNELSYNLVKLHQEQDDHFVPEESLVSRNIEAAAVTTESVLESAAVSISIPTPAPVPE 550

Query: 622 EESTGVIR---KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           ++         +   + +    +    +    +  +       +        S   N   
Sbjct: 551 KKVESKPSLLARIVAKIKALFASKPAEEEKSKNPRNRNNRNRRNQERRNNRRSRSENVER 610

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                    E              +++   +
Sbjct: 611 ENTLKRNEEEVVARPSKSDRKRNRKANVVEN 641



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|213425011|ref|ZP_03357761.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213646391|ref|ZP_03376444.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 1031

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 193/623 (30%), Positives = 306/623 (49%), Gaps = 12/623 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                 ++    A      G+ S   +    +    +     +                +
Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607

Query: 689 NYDVSIPPVSTPEMESSNSSSDP 711
               +    +       N +   
Sbjct: 608 PRQNNRRDRNERRDTRDNRARRD 630



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|289208369|ref|YP_003460435.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix]
 gi|288944000|gb|ADC71699.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix]
          Length = 938

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 222/598 (37%), Positives = 318/598 (53%), Gaps = 35/598 (5%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  +P  V         I+E++K    LLVQ+ KEERGNKGAA+TTY+SLAGRY VLMPN
Sbjct: 71  KEIAPSAVGAPADSDKPIRELLKEGTQLLVQVEKEERGNKGAALTTYISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             K   +SR+I      + L+E   GL +P GMGVI RTAG  R+  E++ D +Y+  LW
Sbjct: 131 NPKAGGVSRRIEGEDRAE-LREALSGLTMPDGMGVIARTAGVGRSTEELQWDLDYMTALW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E A  + AP L+++E N+I RA+RD    D+ E+I+  E  Y++A+DF++L+MP+ 
Sbjct: 190 SAVTEAAEKANAPALIHQESNVIIRALRDHMRNDVGEVIIDDEAVYQQAEDFVRLVMPNS 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            R +++Y+DP P+F R  IE Q++S    +V LPS G ++I+ TEAL+SIDVNS RST+ 
Sbjct: 250 LRKLKKYDDPVPLFNRYQIESQIESAFDRDVQLPSGGALVIDHTEALISIDVNSARSTKG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA  TNLEAAEE+ARQLR+RDL GLIV+DFIDM   K+ R VE +L+E+L+ DRA
Sbjct: 310 GDIEETAFHTNLEAAEEVARQLRVRDLGGLIVIDFIDMNANKHQREVENRLREALELDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQVG IS FGLLEMSRQR+RSS+ ES+   C  C+G G +RS  S+ALSILR +EE  +
Sbjct: 370 RVQVGRISRFGLLEMSRQRLRSSLGESSQITCPRCQGHGQVRSVESLALSILRLIEEEAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     ++     DV  +LLN+KRA+I E EAR  V I++V   +     F +++    +
Sbjct: 430 KDRTGLVLAQVPVDVGTFLLNEKRASINEIEARHRVDISIVPNPQYLTPKFEVQRVRGDE 489

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQD-----------EALLPIPKSESLEDIQDNIV- 620
                  +   +   P  +       +            +   P P +ES      +   
Sbjct: 490 REEVVSGRGSHELVEPVEEDTDTHGERRGKVEKPLVQGVKVKAPAPMAESPAPQAPSEPV 549

Query: 621 ---------------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                                  E+      R+R +  +RP+            S  +  
Sbjct: 550 QQPGFFTRIWSSLFPNAARNQEPEADEKDEGRKRGKGGQRPSR-GGGNSRGGGSSRRRGA 608

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            DD  +               +G+    E               ++  + D   K  +
Sbjct: 609 RDDGGENREAAKASGKGEARPDGSAAGDEGGKGRSRRRGGGTGGAATKTRDAEPKAAK 666



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 1/109 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++LI+A+  EE RV ++   R+ +LD E   +++ K NIY AK+TRVEPSL+AAFV++G
Sbjct: 2   KRILINATQPEELRVAMVDGQRLYDLDIELPSRERKKANIYKAKITRVEPSLEAAFVNFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF EI P     P +D    ++E     T      +    G+
Sbjct: 62  AERHGFLPFKEIAPSAVGAP-ADSDKPIRELLKEGTQLLVQVEKEERGN 109


>gi|194368574|pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
           Catalytic Domain
 gi|194368575|pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
           Catalytic Domain
 gi|194368576|pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
           Catalytic Domain
 gi|194368577|pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
           Catalytic Domain
          Length = 515

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 184/505 (36%), Positives = 282/505 (55%), Gaps = 8/505 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI 594
             +      + +    +      + 
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSE 515



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|76811508|ref|YP_334299.1| ribonuclease E [Burkholderia pseudomallei 1710b]
 gi|76580961|gb|ABA50436.1| ribonuclease E [Burkholderia pseudomallei 1710b]
          Length = 1085

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547

Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646
                                                         R  R R    +  +
Sbjct: 548 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 607

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704
                +    +N                             E    +   P         
Sbjct: 608 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 667

Query: 705 SNSSSDPIVKKTRW-WKRRK 723
            ++      ++TR   + R+
Sbjct: 668 RDNREGREARETREAREPRE 687



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|294141326|ref|YP_003557304.1| ribonuclease E [Shewanella violacea DSS12]
 gi|293327795|dbj|BAJ02526.1| ribonuclease E [Shewanella violacea DSS12]
          Length = 1139

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 206/635 (32%), Positives = 307/635 (48%), Gaps = 15/635 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EVIK  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYTFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     L VP GMG+I+RTAG  +   E+  D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALSELAVPNGMGLIVRTAGVGKDSAELAWDLKVLE 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  ++E ++   AP L+++E N+I RAIRD   +D+ E+++   + + EAK  + L+ 
Sbjct: 189 HHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +A  ++ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFADRIKHYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++++++  
Sbjct: 309 TKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHL 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVSRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +    +K+     +  Y+    E     E  L    +           +       
Sbjct: 489 KDDQISEASYKLLEQPVSNLYEPRKLERATSPEPALKGFTAPVKAPEPKAKAAIAPKATE 548

Query: 629 RKRRRRR--------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 +         +  P  +       S   +  N      +         N +  E
Sbjct: 549 EPGLIAKFFAAIGGLFKAEPKAEEPKKQSESPSQNRNNRRPARKNDSRRNDSRRNRDDKE 608

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                       S    +    E S        K+
Sbjct: 609 QSGDKNERTSRPSRNKRADSNEERSGKEQSDQGKR 643



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 62 ADRHGFLPLKEIAREYF 78


>gi|217420435|ref|ZP_03451940.1| ribonuclease E [Burkholderia pseudomallei 576]
 gi|217395847|gb|EEC35864.1| ribonuclease E [Burkholderia pseudomallei 576]
          Length = 1085

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 203/677 (29%), Positives = 317/677 (46%), Gaps = 51/677 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550

Query: 631 R-----------------------------------------RRRRRRRRPATDHHDAGV 649
                                                         R  R   +  +   
Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGEKAE 610

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMESSNS 707
             +    +N                             E    +   P          ++
Sbjct: 611 RGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGGRDN 670

Query: 708 SSDPIVKKTRW-WKRRK 723
                 ++TR   + R+
Sbjct: 671 REGREARETREAREPRE 687



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|319425977|gb|ADV54051.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200]
          Length = 1126

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 214/643 (33%), Positives = 320/643 (49%), Gaps = 21/643 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 28  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 88  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A    AP L+++E N+I RAIRD   +D+ EI++   + Y EAK  + L+ 
Sbjct: 207 HHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVR 266

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614
               +  + +K     +A  Y+                       ++A  P  K E+ + 
Sbjct: 507 SDDEISESSYKRIEHPEAKLYEPRKLERTAAPTPALKGFAAPQKVEQAPSPTVKIEAPQP 566

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              + +    T +     +    +   T + D    +     +           +     
Sbjct: 567 SFFSKLIGTITALFASSDKAEPAKTTETKNTDTNAANANRRNRRTDTRRPRNSQDADKAK 626

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +      +       V++        E  +S+  P   +T+
Sbjct: 627 EGSREPRNRNAKKTAEPVAVATQERTVREKEDSAKRPAKVETK 669



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 80 ADRHGFLPLKEIAREYF 96



 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 24/171 (14%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+G+PV+        V       +   +   + +   +    ++ES ED   +   +   
Sbjct: 781 EEGTPVETAAIETASVDVVEMPVTVTADSSEMAEPLVVSQDNEAESAEDENTSADEQSKR 840

Query: 626 GVIRKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------- 670
                +RR RR         +R   D  D GV +    + N    +   Y          
Sbjct: 841 EQRDGQRRSRRSPRHLRAAGQRRRRDEDDQGVSAPAQFVPNDELGADQEYPTEVTHSAHV 900

Query: 671 ---------SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                      +    + +       E+      P ST E+E    +  P+
Sbjct: 901 TGPSSAPMVEAVKAETVEQAETVAVVEDTAPVTAPASTTEIEKIAIADAPV 951


>gi|88798807|ref|ZP_01114390.1| ribonuclease E [Reinekea sp. MED297]
 gi|88778570|gb|EAR09762.1| ribonuclease E [Reinekea sp. MED297]
          Length = 868

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 212/666 (31%), Positives = 330/666 (49%), Gaps = 42/666 (6%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D     D+ I      ++ A I        E S+ +A  +  +       
Sbjct: 7   QAEELRVALVDGQKLYDLDIEAGFREQKKANIYKGRITRIEPSLEAAFVEFGAERHGFLP 66

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +      +  K   +  I+E+IK    ++VQ+ KEERGNKGAA+TT +SLAGRY VLM
Sbjct: 67  LKEIAKEYFIDPKMSSRSNIKELIKEGTEVIVQVDKEERGNKGAALTTMVSLAGRYLVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN ++   ISR+I      + ++E  + + +P GMGVI+RTAG  R+  E++ D +YL++
Sbjct: 127 PNNARAGGISRRIEGDERAQ-IREALQNVNLPDGMGVIVRTAGIGRSSEELQWDLDYLLQ 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW +++E +    AP L+ +E N+I RAIRD   +DI  +++  +  Y+ A DF++ +MP
Sbjct: 186 LWGSIKEASQTRPAPFLILQESNVILRAIRDYLRQDIDAVMIDNKDAYQYALDFVQKVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            YA  ++ YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T
Sbjct: 246 GYANKIKLYEDTVPLFNRYQIETQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA  TN+EAAEEIARQLRLRD+ GL+V+DFIDM + K+ R +E K+KE+   D
Sbjct: 306 KGVDIEETAFNTNMEAAEEIARQLRLRDMGGLVVIDFIDMNQAKHQREIEAKIKEATTSD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G +S FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE 
Sbjct: 366 RARVQIGRLSRFGLLEMSRQRLRPSLGETSGIVCPRCNGHGTIRDVKSLSLAILRLIEEE 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+     I       V  +LLN+KR  I + E R  V + VV   ++    + + +   
Sbjct: 426 ALKDRTAQIRTIVPMAVATFLLNEKRDAISDIEKRHKVHVLVVPNPQMETPHYEVIRMRD 485

Query: 571 VQAL-----------------------VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
                                       N      +   +    +    V Q+       
Sbjct: 486 DDESLVSGEPSYAIKFEEQPLESETVLENQVKPQEAAISSIQAPRAPAPVAQEPEKPKTK 545

Query: 608 KSESLEDIQDNIVSEEST-----------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
              + + +        +                 + ++   +  + ++ D    +   S 
Sbjct: 546 APANKKPVAKAEPGLFARIGQWFSGLFEGEKEAPKAKKPVAKSGSGNNKDRRTDNKSKSN 605

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                +S D     ++  N    ++      +   V  P  +  E   +  S     +K 
Sbjct: 606 SKGNRNSSDRRGSSNNRRNGKPAKDTT---AKEKPVKKPVEAKTETNKAEKSETETTQKR 662

Query: 717 RWWKRR 722
              KRR
Sbjct: 663 SSVKRR 668



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 65/107 (60%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   ++ +LD E+  ++Q K NIY  ++TR+EPSL+AAFV++G  
Sbjct: 1   MLINATQAEELRVALVDGQKLYDLDIEAGFREQKKANIYKGRITRIEPSLEAAFVEFGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  +Y+  P    ++ +KE     T+     D    G+
Sbjct: 61  RHGFLPLKEIAKEYFIDPKMSSRSNIKELIKEGTEVIVQVDKEERGN 107


>gi|330446423|ref|ZP_08310075.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490614|dbj|GAA04572.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 1105

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 200/518 (38%), Positives = 296/518 (57%), Gaps = 6/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     L++P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ V+E A +  AP L+++E N+I RAIRD   +DI EI++   K +  A+D +KL+ P 
Sbjct: 191 WNAVKEAADSQPAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q+DS  Q EV LPS G V+I+ TEAL SID+NS R+T+
Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  VC  C G G +R   S++LSILR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  ++      V  YLLN+KR ++   E   GV + +V   ++    F + +    
Sbjct: 431 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           +      + +    +A    + IE    +  +    + 
Sbjct: 491 EEQDTLSYHIPKALEAMKEAEAIESPQPERIVKKREEP 528



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  DY      YQ   + ++ L +   +     +    + 
Sbjct: 62  AERHGFLPLKEIAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112


>gi|330942729|gb|EGH45265.1| ribonuclease E [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 603

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 215/526 (40%), Positives = 309/526 (58%), Gaps = 5/526 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN 618
             ++       + A +  + I         L+P   +      + N
Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVPQEAAVKTAPARAN 533



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|68249015|ref|YP_248127.1| ribonuclease E [Haemophilus influenzae 86-028NP]
 gi|68057214|gb|AAX87467.1| ribonuclease E [Haemophilus influenzae 86-028NP]
          Length = 951

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 28  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 87

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 88  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 147

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 148 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 206

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 207 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 266

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 267 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 326

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 327 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 386

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 387 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 446

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 447 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 506

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 507 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 566

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 567 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 626

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 627 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 676



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 18 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 77

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 78 AERHGFLPLKEIAREYF 94


>gi|270261337|ref|ZP_06189610.1| ribonuclease E [Serratia odorifera 4Rx13]
 gi|270044821|gb|EFA17912.1| ribonuclease E [Serratia odorifera 4Rx13]
          Length = 1123

 Score =  309 bits (791), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 198/634 (31%), Positives = 306/634 (48%), Gaps = 11/634 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 188 WEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLALSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 428 ALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQTPHYSVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +  +   +   + +     P   S SL    D     E     
Sbjct: 488 KGEETPTLSYLLPKLHEEEMAQPLDDAPMERKRPEQPALASFSL--AADAPPPAEEPVAA 545

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +        +  A      G++  +      +  S +  +  +          G      
Sbjct: 546 QSAAAAVVAKPSAPTAAKPGLLGRLFGGLKALFASEEQPVVEAKPAVEAPKAEGNGENRR 605

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                     +   E           +      R
Sbjct: 606 QDRRGQRRQGSGRKERGERGERGERGERSDRPER 639



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|46143575|ref|ZP_00134935.2| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 992

 Score =  309 bits (791), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 602

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                      + +  N   +   K  R 
Sbjct: 603 KQTQTQDEQKAQRQERNQERNEAKKARRQ 631



 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|329894957|ref|ZP_08270756.1| Ribonuclease E [gamma proteobacterium IMCC3088]
 gi|328922686|gb|EGG30021.1| Ribonuclease E [gamma proteobacterium IMCC3088]
          Length = 883

 Score =  309 bits (791), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 205/590 (34%), Positives = 311/590 (52%), Gaps = 30/590 (5%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
              K      I++++K    +++Q+ KEERGNKGAA+T+Y+SLAGRY VLMPN  K   I
Sbjct: 80  KKGKAGDSSKIKDLVKEGTEIIIQVDKEERGNKGAAITSYISLAGRYMVLMPNNPKAGGI 139

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SR+I      + L++    L +P GMGVI+RTAG  R+  E++ D  YL++LW+ + + A
Sbjct: 140 SRRIEGDDRSQ-LRDAINELVIPDGMGVIVRTAGVGRSSEELQWDLNYLVQLWEAITKAA 198

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               AP L+++E N+I RA+RD    DI ++++   + +REA DF+ L+MP Y   ++ Y
Sbjct: 199 DEFRAPTLLFQESNVIVRAVRDYLRDDIDQVLIDSTEAHREASDFVGLVMPQYRDRIKLY 258

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           EDP P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS ++TR   IE+TA
Sbjct: 259 EDPIPMFNRFQIEAQIETAFQREVRLPSGGSIVIDPTEALVSIDINSAKATRGGDIEETA 318

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           LQTNLEAA+EIARQLRLRD+ GL+V+DFIDM   KN R VE +++++L  DRARVQVG I
Sbjct: 319 LQTNLEAADEIARQLRLRDMGGLVVIDFIDMLASKNQRLVENRIRDALAIDRARVQVGKI 378

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQR+R S+ E++  VC  C G G IR   S+ALSILR +EE  ++     +
Sbjct: 379 SRFGLLEMSRQRLRPSLGETSAIVCPRCTGQGIIRDTKSLALSILRLLEEEAIKDRTAEV 438

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             H   DV  YLLN+KR  +   EA   V + V+    +    F +++    +       
Sbjct: 439 RAHVPLDVAAYLLNEKRIALATIEANARVRVLVIPNPNMETPHFDVQRLRDDEVSGTREV 498

Query: 580 KVGSDSQAPSYD----KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
               D   P  D    ++ +    + A+  I  +++           E+    R  R+++
Sbjct: 499 SYKVDVAVPDTDLFKVEDAKAKAPEAAVKSIAPTQAPAPAPKVDKKLEAKQPRRDNRKKQ 558

Query: 636 RRRRPA------------------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            ++  +                         D   +       +     ++      E  
Sbjct: 559 HKKPKSLWQKIVHALFGEPKKAKPAEKKGKRDEETSNRRKPNENRNEQRNNERGTNNEGG 618

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           +                  +       + ++  +     P  ++ R  +R
Sbjct: 619 NKRRRRRPNKSRANNQTESEQQTNTEVSTDIVETAREDKP-KRRPRNQRR 667



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KMLI+A+  EE RV ++   R+ +LD E+  + Q K NIY  K+TRVEPSL+AAFVD+G
Sbjct: 2  KKMLINATQPEELRVALVDGQRLYDLDIENRTRTQKKANIYKGKITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI P+YY
Sbjct: 62 AERHGFLPLKEIAPEYY 78


>gi|237813218|ref|YP_002897669.1| ribonuclease E [Burkholderia pseudomallei MSHR346]
 gi|237505956|gb|ACQ98274.1| ribonuclease E [Burkholderia pseudomallei MSHR346]
          Length = 1088

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550

Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646
                                                         R  R R    +  +
Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704
                +    +N                             E    +   P         
Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670

Query: 705 SNSSSDPIVKKTRW-WKRRK 723
            ++      ++TR   + R+
Sbjct: 671 RDNREGREARETREPREPRE 690



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110



 Score = 37.3 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 1/110 (0%)

Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
            P  E  E  +    +E       + R RR          D        +     +    
Sbjct: 597 RPARERAERGERGEKAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGK 656

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              EP +        +   G  E  +   P     + E   +      ++
Sbjct: 657 ETREPREGREARGGRDNREGR-EARETREPREPREQREPREAREQREARE 705


>gi|92111361|gb|ABE73477.1| putative ribonuclease E [Photobacterium angustum S14]
          Length = 1078

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 201/556 (36%), Positives = 304/556 (54%), Gaps = 12/556 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     L++P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ V+E A +  AP L+++E N+I RAIRD   +DI EI++   K +  A+D +KL+ P 
Sbjct: 188 WNAVKEAADSQSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q+DS  Q EV LPS G V+I+ TEAL SID+NS R+T+
Sbjct: 248 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  VC  C G G +R   S++LSI R +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSIPRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  ++      V  YLLN+KR ++   E   GV + +V   ++    F + +    
Sbjct: 428 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------ESLEDIQDNIVSEEST 625
           +      + +    +A    + IE    +  +    +          +       + + T
Sbjct: 488 EEQDTLSYHIPKTLEALKEAEAIEAPQPERVIKKREEPVLQGFTAPKQPAPVAKPAAKPT 547

Query: 626 GVIRKRRRRRRRRRPA 641
             +  +      ++P 
Sbjct: 548 PKVTAKPATESTKKPG 563



 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 6/109 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   ++ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  E+  DY      YQ   + ++ L +   +     +    + 
Sbjct: 61  RHGFLPLKEVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 109


>gi|290475863|ref|YP_003468755.1| RNase E [Xenorhabdus bovienii SS-2004]
 gi|289175188|emb|CBJ81991.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation
           [Xenorhabdus bovienii SS-2004]
          Length = 1061

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 206/625 (32%), Positives = 318/625 (50%), Gaps = 10/625 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
             + E  P  +    +  I++++K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSSYHAHGRPNIKDILKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRIE-LKEALSSLELPEGMGLIVRTAGVGKSAEALQGDLNFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A N  AP L+++E N+I RA RD    DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADNHPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLARQHITALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  ++ Y    P+F    IE Q++S  Q EV LPS G V+I+ TEAL +ID+NS R+T
Sbjct: 251 DFASKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGSVVIDTTEALTAIDINSSRAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  +   E R G V + +V   ++    F + +  
Sbjct: 431 ALKENTHQVHAIVPVQIASYLLNEKRKAVSAIEHRQGDVGVVIVPNDQMQTPHFSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + +    + +       +   N +   Q E   P   + S  D+    V+  +     
Sbjct: 491 KGEEISTLSYLL--PQLHEAEMTNAQDDGQHERKRPEQPAISTFDLPAETVAPVAAKTKE 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           K+      ++       +  +  +  I N  ++  +        +N N            
Sbjct: 549 KKVVVSNNQQIEQPGLFSRFLCALKKIFNGEEEKQEQEKSNKSSSNDNRRSPERRNSRRQ 608

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714
                   +      +    D   K
Sbjct: 609 NQRRERNENDTRNNHNRERGDEQRK 633



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|260597455|ref|YP_003210026.1| ribonuclease E [Cronobacter turicensis z3032]
 gi|260216632|emb|CBA29936.1| Ribonuclease E [Cronobacter turicensis z3032]
          Length = 1062

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 197/594 (33%), Positives = 306/594 (51%), Gaps = 10/594 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPASYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A N  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  I   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKREAITAIETRQGGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEESTGV 627
             +      + +     +A +     E   +     P   +  + D+      +      
Sbjct: 491 KGEETHTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFVMPDVPPMPQETSAPAAE 550

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               +   +   PA +   +  +S + S+      +  +  EP      N  + 
Sbjct: 551 PAAPKAPVKAAEPAKEGFLSRAISALKSLFASEPQAQPVASEPEPQPAKNREDK 604



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|319898066|ref|YP_004136263.1| ribonuclease e, RNA-binding protein [Haemophilus influenzae F3031]
 gi|317433572|emb|CBY81956.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3031]
          Length = 932

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 199/650 (30%), Positives = 324/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 69  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS+FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 368 ARIQISRISHFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 487

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 488 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAAVALSISEAAPTPVER 547

Query: 622 EESTG---------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
           + +                    +  + +  R     + +     D    +    ++ ++
Sbjct: 548 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRPSRRPRSENNEI 607

Query: 667 YMEPSDITN--HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 + N              E         STP  E+    ++P+ +
Sbjct: 608 KRTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFETKEERTEPVTQ 657



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|53720058|ref|YP_109044.1| putative ribonuclease E [Burkholderia pseudomallei K96243]
 gi|126454922|ref|YP_001067110.1| ribonuclease E [Burkholderia pseudomallei 1106a]
 gi|254259231|ref|ZP_04950285.1| ribonuclease E [Burkholderia pseudomallei 1710a]
 gi|52210472|emb|CAH36455.1| putative ribonuclease E [Burkholderia pseudomallei K96243]
 gi|126228564|gb|ABN92104.1| ribonuclease E [Burkholderia pseudomallei 1106a]
 gi|254217920|gb|EET07304.1| ribonuclease E [Burkholderia pseudomallei 1710a]
          Length = 1088

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550

Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646
                                                         R  R R    +  +
Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704
                +    +N                             E    +   P         
Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670

Query: 705 SNSSSDPIVKKTRW-WKRRK 723
            ++      ++TR   + R+
Sbjct: 671 RDNREGREARETREAREPRE 690



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|242315148|ref|ZP_04814164.1| ribonuclease E [Burkholderia pseudomallei 1106b]
 gi|242138387|gb|EES24789.1| ribonuclease E [Burkholderia pseudomallei 1106b]
          Length = 1088

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550

Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646
                                                         R  R R    +  +
Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704
                +    +N                             E    +   P         
Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670

Query: 705 SNSSSDPIVKKTRW-WKRRK 723
            ++      ++TR   + R+
Sbjct: 671 RDNREGREARETREAREPRE 690



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|194368580|pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
           Fragments - Catalytic Domain
 gi|194368581|pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
           Fragments - Catalytic Domain
 gi|194368582|pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
           Fragments - Catalytic Domain
 gi|194368583|pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
           Fragments - Catalytic Domain
          Length = 509

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 184/499 (36%), Positives = 281/499 (56%), Gaps = 8/499 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAP 588
             +      + +    +  
Sbjct: 491 KGEETPTLSYMLPKLHEEA 509



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|327393479|dbj|BAK10901.1| ribonuclease E Rne [Pantoea ananatis AJ13355]
          Length = 1095

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 188/518 (36%), Positives = 281/518 (54%), Gaps = 9/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPDGMGLIVRTAGVGKSAESLQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKDNTKEVHAIVPVPVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606
             +      + +        +     E   +     P 
Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPA 528



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|146329280|ref|YP_001209222.1| ribonuclease E [Dichelobacter nodosus VCS1703A]
 gi|146232750|gb|ABQ13728.1| ribonuclease E [Dichelobacter nodosus VCS1703A]
          Length = 1233

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 208/560 (37%), Positives = 305/560 (54%), Gaps = 6/560 (1%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P     +  I++++   Q +LVQI KEERGNKGAA+TTY+SLAGR+ VLMPN      +
Sbjct: 80  EPHDGADKSNIKDLLSVGQKVLVQIEKEERGNKGAALTTYVSLAGRFLVLMPNNPHAGGV 139

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SR+I      K LK+    L VP  MGVI+RTAG  R+  E++ D ++L ++WD +    
Sbjct: 140 SRRIQGDER-KELKDYLEQLGVPEEMGVIIRTAGVGRSIEELQWDLDFLRQVWDAITAAY 198

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
            N+ +  L+Y+E N+I RA+RD    D+ +I++  E+ Y++A DFM L+MPS    ++ Y
Sbjct: 199 HNTASQKLIYQESNIIVRALRDYLRPDVGQILIDDEQVYQQAMDFMNLVMPSSINKLKLY 258

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +DP P+F R  IE Q+++ +Q  V LPS G ++I+ TEALVSID+NS +ST+   IE+TA
Sbjct: 259 QDPTPLFTRYQIEGQIETAYQRNVKLPSGGELVIDYTEALVSIDINSSKSTKGCDIEETA 318

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            QTNLEAA+EIARQ+RLRD  GLIV+DFIDM+  +N + VE++L ++ K DRAR+Q+G I
Sbjct: 319 YQTNLEAADEIARQMRLRDFGGLIVIDFIDMDVSRNRKDVEQRLIDATKIDRARIQIGRI 378

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGLLEMSRQR+R+S+ E++ +VC  CKG G IR   S ALS+LR +EE  ++     I
Sbjct: 379 SRFGLLEMSRQRLRASIDEASHQVCPRCKGQGSIRGIQSQALSLLRLIEEEAMKDRTRRI 438

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                 D+  +LLN+KR+ I   E R  V I + I   L    ++IE+    +       
Sbjct: 439 TGELPVDIATFLLNEKRSVIQSIEKRNHVDIVLTINPHLHSPDYFIERFRDDEMNEEMSA 498

Query: 580 KVG---SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                  + Q  S +  I     D    P+  S   +          +           +
Sbjct: 499 VPSYRLVNHQHNSEEMPILRPKDDRVEAPVVSSIMPQTPVPQAKGGAAVVKSGLSALFSK 558

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                 + H+   V  V   +       +     S   +H   E       +      P 
Sbjct: 559 VVALFKEGHNGHTVDAVLHKKEEKQTINESVTPTSKNVHH--EETAQPVREKPIVTPAPE 616

Query: 697 VSTPEMESSNSSSDPIVKKT 716
            ST +   S  ++   VK+ 
Sbjct: 617 ASTVQTHESTPANGANVKRK 636



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 100/747 (13%), Positives = 207/747 (27%), Gaps = 49/747 (6%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD E+ +  Q K NIY   +TR+EPSL+A FVDYG
Sbjct: 2   KRMLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYTGTITRIEPSLEAVFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPF--SDRQALLK--------ESNIAQTDSEAVADDVTHGDV 112
             RHGFLPF EI  +Y   P   +D+  +             I + +       +T    
Sbjct: 62  STRHGFLPFKEIAKEYLAEPHDGADKSNIKDLLSVGQKVLVQIEKEERGNKGAALTTYVS 121

Query: 113 TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ----Y 168
                  L    P A       +        D +  +   +            R      
Sbjct: 122 LAGRFLVLMPNNPHAGGVSRRIQGDERKELKDYLEQLGVPEEMGVIIRTAGVGRSIEELQ 181

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
              + ++     +          K     + + +      L P+  +            D
Sbjct: 182 WDLDFLRQVWDAITAAYHNTASQKLIYQESNIIVRALRDYLRPDVGQILI--------DD 233

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
            +  ++    + +     +         T +  +   E  +           +     + 
Sbjct: 234 EQVYQQAMDFMNLVMPSSINKLKLYQDPTPLFTRYQIEGQIETAYQRNVKLPSGGELVID 293

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS--------YARIVRQYE 340
           Y E  +          K       + +     A +  + +               +    
Sbjct: 294 YTEALVSIDINSSKSTKGCDIEETAYQTNLEAADEIARQMRLRDFGGLIVIDFIDMDVSR 353

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
           +   +  R     ++D        +   G + +++     SID  S +       + +  
Sbjct: 354 NRKDVEQRLIDATKIDRARIQIGRISRFGLLEMSRQRLRASIDEASHQVCPRCKGQGSIR 413

Query: 401 QTNLEA------AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
               +A       EE A + R R + G + VD       +  RSV + +++    D    
Sbjct: 414 GIQSQALSLLRLIEEEAMKDRTRRITGELPVDIATFLLNE-KRSVIQSIEKRNHVDIVLT 472

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
               + +     + R R      E +                +S  + ILR  ++ +   
Sbjct: 473 INPHLHSPDYF-IERFRDDEMNEEMSAVP----SYRLVNHQHNSEEMPILRPKDDRVEAP 527

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
              +I+  T            ++ +        V      G         + K    Q +
Sbjct: 528 VVSSIMPQTPVPQAKGGAAVVKSGLSAL--FSKVVALFKEGHNGHTVDAVLHKKEEKQTI 585

Query: 575 VN--TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
               T        +  +     + +          ++          V  +       + 
Sbjct: 586 NESVTPTSKNVHHEETAQPVREKPIVTPAPEASTVQTHESTPANGANVKRKEKSDDHDKH 645

Query: 633 RRRRRRRPATDHHDAGVVSDVSS---IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
             +   + A   +D  V   +          +        P D+              + 
Sbjct: 646 HAKPTPKAAKMENDDEVNPSLEELLHPVESKNGREVRKGRPRDVHAVRGQGKAPETMPDF 705

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
              S     T  +   +  ++ I    
Sbjct: 706 EQSSDELKRTETVAHHDVKNERISDNK 732


>gi|301169115|emb|CBW28712.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Haemophilus influenzae
           10810]
          Length = 932

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 200/650 (30%), Positives = 318/650 (48%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 487

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +     +    + +  +        +   P  ES        E     +  
Sbjct: 488 EEVNELSYNLAKIHCEKDESTEESLVSRNVDTTVVAEQPAVESAVVALSISEAAPTPVER 547

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 548 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 607

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 608 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 657



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|319775659|ref|YP_004138147.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047]
 gi|317450250|emb|CBY86466.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047]
          Length = 932

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 199/650 (30%), Positives = 317/650 (48%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 69  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 487

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +   +   P  ES        E     +  
Sbjct: 488 EEVNELSYNLAKIHCAQDENTEESLVSRNVETTVVTEQPAVESAVVALSISEAAPTPVER 547

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 548 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 607

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 608 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 657



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|53725727|ref|YP_102317.1| ribonuclease E [Burkholderia mallei ATCC 23344]
 gi|121601250|ref|YP_993795.1| ribonuclease E [Burkholderia mallei SAVP1]
 gi|251767264|ref|ZP_02266561.2| ribonuclease E [Burkholderia mallei PRL-20]
 gi|254178087|ref|ZP_04884742.1| ribonuclease E [Burkholderia mallei ATCC 10399]
 gi|52429150|gb|AAU49743.1| ribonuclease E [Burkholderia mallei ATCC 23344]
 gi|121230060|gb|ABM52578.1| ribonuclease E [Burkholderia mallei SAVP1]
 gi|160699126|gb|EDP89096.1| ribonuclease E [Burkholderia mallei ATCC 10399]
 gi|243063306|gb|EES45492.1| ribonuclease E [Burkholderia mallei PRL-20]
          Length = 1090

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|1573386|gb|AAC22072.1| ribonuclease E (rne) [Haemophilus influenzae Rd KW20]
          Length = 951

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 28  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 87

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 88  EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 147

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 148 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 206

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 207 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 266

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 267 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 326

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 327 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 386

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 387 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 446

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 447 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 506

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 507 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 566

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 567 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 626

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 627 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 676



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 18 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 77

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 78 AERHGFLPLKEIAREYF 94


>gi|165976871|ref|YP_001652464.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876972|gb|ABY70020.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 995

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 202/654 (30%), Positives = 320/654 (48%), Gaps = 30/654 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI- 628
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550

Query: 629 ---------------------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
                                 + +   + +  A + HD     +  +  +  +      
Sbjct: 551 VEPAKPSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQHDRRNRRERPNRVDRQERKQTQA 610

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +          +           V        E ++   S+       R  +R
Sbjct: 611 QDEQKAQRQERNQERNEAKKARRQVVEEVAGVQETQTEQRSNKDNATTERRQRR 664



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|126208900|ref|YP_001054125.1| ribonuclease E [Actinobacillus pleuropneumoniae L20]
 gi|126097692|gb|ABN74520.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 995

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 605

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                      + +  N   +   K  R 
Sbjct: 606 KQTQTQDEQKAQRQERNQERNEAKKARRQ 634



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|330877843|gb|EGH11992.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 504

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 212/497 (42%), Positives = 300/497 (60%), Gaps = 4/497 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSY 590
             +        + A S 
Sbjct: 488 EAHNSQTSYEIAAAGSA 504



 Score =  137 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|296102898|ref|YP_003613044.1| ribonuclease E [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057357|gb|ADF62095.1| ribonuclease E [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 1034

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 195/626 (31%), Positives = 310/626 (49%), Gaps = 13/626 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KRA +   EAR  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPK----SESLEDIQDNIVSEES 624
             +      + +     +  +   + E   +     P        E+  +      + + 
Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPESALEKPAAKP 550

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                    +    +P       G +  + + + V  +      + +            +
Sbjct: 551 AAQKPAVAAKAEPAQPGLLSRFFGALKKMFAGEEVQPEQPKEEPKAAKPERQQDRRKRQN 610

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSD 710
              +  D S           +N   +
Sbjct: 611 NRRDRNDRSDRNERRDNRSDNNEGRE 636



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|253996194|ref|YP_003048258.1| Rne/Rng family ribonuclease [Methylotenera mobilis JLW8]
 gi|253982873|gb|ACT47731.1| ribonuclease, Rne/Rng family [Methylotenera mobilis JLW8]
          Length = 920

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 208/618 (33%), Positives = 313/618 (50%), Gaps = 8/618 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            ++    A+ D     D+ I +    +  + I        E S+ +A  D   +      
Sbjct: 10  QSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYGQDRHGFLP 69

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  +     +    +  IQ+ +K  Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP
Sbjct: 70  FKEVARSYYKEGADGRARIQDALKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I      + L+++   LEVP GM +I RTAG  R   E++ D  YL +L
Sbjct: 130 NNPRGGGVSRRIEGEDRDE-LRDVLAQLEVPKGMSIIARTAGIGRNAEELQWDLNYLTQL 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   +      +L+Y+EG+L+ RAIRD +  DI EI++     + +A  FM  +MPS
Sbjct: 189 WSAIDGASAMQAGAYLIYQEGSLVIRAIRDYFSSDIGEILIDTPDIHEQAVQFMNHVMPS 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V+ Y+D  P+F R  IE Q++S    EV LPS G ++I+ TEALVS+DVNSGR+TR
Sbjct: 249 NVARVKLYQDEIPLFTRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRATR 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA  TNLEAAEE+ARQLRLRDL GL+V+DFIDME ++N R VE  L+++L  DR
Sbjct: 309 GSDIENTAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMESQRNQREVENALRDALHADR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ G IS FGLLE+SRQR+R S+ E+    C  C G G+IR   S AL ILR  +E  
Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGETNHIPCPRCHGTGHIRGIESTALHILRITQEDA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +  I V    +V  +LLN+KRA I + E R GV + ++  I L    + I +    
Sbjct: 429 MKENSAIIQVQLPVEVATFLLNEKRADIHKIEERMGVEVVLIPNIHLETPNYNIIRIKHD 488

Query: 572 QALVNTGHKVGSDSQAPSY----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +T        + PS      K  E     + +  +            +   E    
Sbjct: 489 DVNEDTSKASYQMVELPSETTYVSKAAEEAKAVKPVAAVKGITPAAPAPMPVEKVEPKLS 548

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
           +  + ++       ++       S  +   +  ++        +    +       +   
Sbjct: 549 LFAKIKKFLGIGEKSEAEKGAEKSSDARRDHPRNNRNRNERNRNRSERNRNERGDKNANQ 608

Query: 688 ENYDVSIPPVSTPEMESS 705
           E    +    +    ++ 
Sbjct: 609 ERAPKNAEQKAQEPRQAE 626



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ +LD E   K+Q K NIY   +TR+EPSL+AAFVDYG
Sbjct: 2   KRMLFNATQSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   YY+   +D +A ++++     +     D    G+
Sbjct: 62  QDRHGFLPFKEVARSYYK-EGADGRARIQDALKEGQELIVQVDKDERGN 109


>gi|329122288|ref|ZP_08250876.1| ribonuclease E [Haemophilus aegyptius ATCC 11116]
 gi|327473849|gb|EGF19266.1| ribonuclease E [Haemophilus aegyptius ATCC 11116]
          Length = 935

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 199/650 (30%), Positives = 324/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS+FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISHFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAAVALSISEAAPTPVER 550

Query: 622 EESTG---------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
           + +                    +  + +  R     + +     D    +    ++ ++
Sbjct: 551 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRPSRRPRSENNEI 610

Query: 667 YMEPSDITN--HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 + N              E         STP  E+    ++P+ +
Sbjct: 611 KRTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFETKEERTEPVTQ 660



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|148827613|ref|YP_001292366.1| ribonuclease E [Haemophilus influenzae PittGG]
 gi|148718855|gb|ABQ99982.1| ribonuclease E [Haemophilus influenzae PittGG]
          Length = 935

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 321/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|134277542|ref|ZP_01764257.1| ribonuclease E [Burkholderia pseudomallei 305]
 gi|134251192|gb|EBA51271.1| ribonuclease E [Burkholderia pseudomallei 305]
          Length = 1093

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 12  EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190

Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++MP
Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A ++        ++  + +   E  +   A    P+ E+            S    R+
Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550

Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646
                                                         R  R R    +  +
Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704
                +    +N                             E    +   P         
Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670

Query: 705 SNSSSDPIVKKTRW-WKRRK 723
            ++      ++TR   + R+
Sbjct: 671 RDNREGREARETREAREPRE 690



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110


>gi|229846500|ref|ZP_04466608.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1]
 gi|229810593|gb|EEP46311.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1]
          Length = 935

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 192/606 (31%), Positives = 315/606 (51%), Gaps = 17/606 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           + +    + +         +     V ++     + +  ++E     +   E+     +R
Sbjct: 491 EEVNELSYNLAKIHCEKDENTEESLVSRNIETTAVIEQPAVESAAVALSISEAAPTPVER 550

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           +            ++  +++ + +    +  +     +P +               +   
Sbjct: 551 K-----------SNEPSLLAKIIAKIKGLFAAKSEENKPKNNRTSRNPNRNQRRSQDRRT 599

Query: 692 VSIPPV 697
              P  
Sbjct: 600 SRRPRS 605



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|308272368|emb|CBX28973.1| Ribonuclease G [uncultured Desulfobacterium sp.]
          Length = 509

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 272/565 (48%), Gaps = 59/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  K++++     ETRV +L D  + E   E  +   I GNIY  +V RV P +QA    
Sbjct: 1   MYKKIVVNVCE-HETRVALLEDGNIAEFFIERGNISDIAGNIYKGRVQRVLPGMQA---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                         +    DD++ G        + 
Sbjct: 56  ---------AFIDIG--------------------INQAAFIYVDDLSIGGFDESKPCNP 86

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E     N S   E       N+++                        I ++I   Q L
Sbjct: 87  VEAQTADNVSSYPETTHFSKKNHELK-----------------------IGDLITEGQEL 123

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L Q+ K   G KGA VT+Y +L GR+ VLMPN+     +SR+I N  +R  LKE+   L 
Sbjct: 124 LAQVAKPPIGTKGARVTSYPTLPGRFVVLMPNSDHIG-VSRRIENEKERNRLKEMVISLR 182

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G I+RTA     +  ++ +  +L+ LW N+++    + AP L+++E  +  RA R
Sbjct: 183 KE-NYGYIVRTAAEGIHEESLENEMNFLINLWKNIQQKYKTAAAPSLLHKELTVCLRAAR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL   +  ++I+     Y     F+   MPS    V  YE   PIF    +E  +    +
Sbjct: 242 DLLMHEADKMIIDSRPDYESVLSFLDTFMPSLKSAVELYEGNEPIFDAYNLEGDVSRALR 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L S GY+II  TEALV+IDVN+GR   +H +E+T L+TNLEA +EIA Q+RLRD+ 
Sbjct: 302 RKIWLKSGGYIIIEHTEALVAIDVNTGRYVGKHNLEETILKTNLEAVKEIAYQIRLRDIG 361

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME+K+N   V    +E+L KD+++  +  IS  GL++M+R+RIRS ++++ 
Sbjct: 362 GIIIIDFIDMEKKQNQEKVFNAFREALVKDKSKTNILPISEMGLIQMTRKRIRSPLIQAL 421

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G G + S+ ++  +I R ++   L      I +H H ++   L  ++   I+
Sbjct: 422 CEPCFYCEGEGKLLSRQTICYNIYREIQRESLDMAGSKIALHVHPEIAELLHVEENHLII 481

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
             E   G  I +    E   + F I
Sbjct: 482 SLEKMIGRQIVIYPESEYHLQEFEI 506


>gi|82408148|pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
 gi|82408201|pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
           Rna
 gi|82408258|pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
          Length = 517

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 184/499 (36%), Positives = 281/499 (56%), Gaps = 8/499 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 19  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 78

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 79  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 138

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 139 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 197

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 198 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 257

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 258 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 317

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 318 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 377

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 378 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 437

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 438 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 497

Query: 570 PVQALVNTGHKVGSDSQAP 588
             +      + +    +  
Sbjct: 498 KGEETPTLSYMLPKLHEEA 516



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 9  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 68

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 69 AERHGFLPLKEIAREYF 85


>gi|317401916|gb|EFV82522.1| ribonuclease E [Achromobacter xylosoxidans C54]
          Length = 794

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 206/620 (33%), Positives = 302/620 (48%), Gaps = 66/620 (10%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR++     ++ L++    LE+P GM +I RTAG  R   E++ D  YL++L
Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQL 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +   A ++ AP L+Y E +L+ RAIRD +  +I EI++  ++   +A  FM ++MP 
Sbjct: 190 WTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             + V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALVS+DVNS RSTR
Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARSTR 309

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL+TN EAA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L  DR
Sbjct: 310 GADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G IR   S AL +LR ++E  
Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  YLLN+KRA I + EAR  V++ ++    L     +IE+    
Sbjct: 430 MKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP------------------------ 607
              +          +AP+ D   +    +    P                          
Sbjct: 490 DPRLEEVKTSFELVEAPATDAPWQPRESEIKARPEALVKGITPSQPAPVSTPAPAPAPAA 549

Query: 608 -------------------KSESLEDIQDNIVSE---------------------ESTGV 627
                               SE  +        E                     E  G 
Sbjct: 550 APAQSGGGLLKRLFGWLTGNSEPAKTASAAAQEETGAKRAASPARGKGRGAHDGQERRGE 609

Query: 628 IRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                R R RR    T+  + G         N   +      +     N+          
Sbjct: 610 RHGSDRNRNRRGESRTEGAEGGEGGRHHIRGNRRPEGERGERQERGERNNRNERGERDQA 669

Query: 687 TENYDVSIPPVSTPEMESSN 706
            +    S  P   PE    +
Sbjct: 670 VQAAQASNRPDVAPEAAGDD 689



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ +LD E+  ++Q KGNIY   +TR+EP L+A FV+YG
Sbjct: 2   KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF E+   +++     R A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110


>gi|307250703|ref|ZP_07532639.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857261|gb|EFM89381.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 992

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 314/629 (49%), Gaps = 13/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 602

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +      + +  N   +   K  R 
Sbjct: 603 KQTQVQDEQKAQRQERNQERNEAKKARRQ 631



 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|260580524|ref|ZP_05848352.1| ribonuclease E [Haemophilus influenzae RdAW]
 gi|260092866|gb|EEW76801.1| ribonuclease E [Haemophilus influenzae RdAW]
          Length = 947

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 24  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 83

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 84  EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 143

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 144 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 202

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 203 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 262

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 263 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 322

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 323 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 382

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 383 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 442

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 443 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 502

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 503 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 562

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 563 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 622

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 623 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 672



 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 14 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 73

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 74 AERHGFLPLKEIAREYF 90


>gi|323247715|gb|EGA31659.1| ribonuclease E [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
          Length = 709

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +     +A +     E   +     P   + ++ D+       E    +
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684
                 ++    A      G+ S   +    +    +        P         ++   
Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|311280009|ref|YP_003942240.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1]
 gi|308749204|gb|ADO48956.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1]
          Length = 1051

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 187/534 (35%), Positives = 289/534 (54%), Gaps = 9/534 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLQLPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E+R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRDAVSAIESRQGGVRCIIVPNEQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
             +      + +     +  +   + E   +     P   +  + D       E
Sbjct: 491 KGEETQTLSYLLPKLHEEEMALPSDEEPAERKRPEQPALATFVMPDTPPAPDVE 544



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|145634590|ref|ZP_01790299.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA]
 gi|145268135|gb|EDK08130.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA]
          Length = 935

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 551 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|260582323|ref|ZP_05850116.1| ribonuclease G and E [Haemophilus influenzae NT127]
 gi|260094691|gb|EEW78586.1| ribonuclease G and E [Haemophilus influenzae NT127]
          Length = 937

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 321/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I   +    E S+ +A  D  +         
Sbjct: 14  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 73

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 74  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 133

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 134 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 192

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 193 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 252

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 253 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 312

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 313 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 372

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 373 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 432

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 433 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 492

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 493 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 552

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 553 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 612

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 613 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 662



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 1  MA-NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M   +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY   +TRVEPSL+AAFV
Sbjct: 1  MTMKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFV 60

Query: 60 DYGGNRHGFLPFLEIHPDYY 79
          DYG  RHGFLP  EI  +Y+
Sbjct: 61 DYGAERHGFLPLKEIAREYF 80


>gi|120599253|ref|YP_963827.1| ribonuclease [Shewanella sp. W3-18-1]
 gi|146292673|ref|YP_001183097.1| ribonuclease [Shewanella putrefaciens CN-32]
 gi|120559346|gb|ABM25273.1| RNAse E [Shewanella sp. W3-18-1]
 gi|145564363|gb|ABP75298.1| RNAse E [Shewanella putrefaciens CN-32]
          Length = 1128

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 215/643 (33%), Positives = 320/643 (49%), Gaps = 21/643 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 28  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 88  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A    AP L+++E N+I RAIRD   +D+ EI++   + Y EAK  + L+ 
Sbjct: 207 HHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVR 266

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614
               +  + +K     +A  Y+                       ++A  P  K E+ + 
Sbjct: 507 SDDEISESSYKRIEHPEAKLYEPRKLERTAAPTPALKGFAAPQKVEQAPSPTVKIEAPQP 566

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              + +    T +     +    +   T + D    +     +           +     
Sbjct: 567 SFFSKLIGTITALFASSDKAEPAKTTETKNTDTNAANANRRNRRTDTRRPRNSQDADKAK 626

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             N      +       V++        E  +S+  P   +T+
Sbjct: 627 EGNREPRNRNAKKTAEPVAVATQERAVREKEDSAKRPAKVETK 669



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 80 ADRHGFLPLKEIAREYF 96


>gi|296444933|ref|ZP_06886895.1| ribonuclease, Rne/Rng family [Methylosinus trichosporium OB3b]
 gi|296257601|gb|EFH04666.1| ribonuclease, Rne/Rng family [Methylosinus trichosporium OB3b]
          Length = 982

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 276/472 (58%), Positives = 346/472 (73%), Gaps = 3/472 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                   + +RQY IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT+
Sbjct: 278 DEAPYRATRPRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 337

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  ISRKIT+  DRK LKEI + LEVP GMGVILRTAGA+RTK E+KRDFEYL+R+W++
Sbjct: 338 RGGGISRKITDGADRKRLKEIVQELEVPEGMGVILRTAGATRTKAEVKRDFEYLLRMWES 397

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           VREL L S A  LVYEEG+LIKRAIRDLY +D+ E+IVSGE+ YREAKDFM++L+PS+A+
Sbjct: 398 VRELTLRSSAATLVYEEGSLIKRAIRDLYGRDVEEVIVSGEESYREAKDFMRMLIPSHAK 457

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            VR Y +P PIF  +G E QLD+L   +VTL S GY++INQTEALV+IDVNSGRSTREH 
Sbjct: 458 NVRLYREPTPIFASAGAESQLDALFSNQVTLKSGGYLVINQTEALVAIDVNSGRSTREHN 517

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IEDTAL+TNLEAA+E+ARQLRLRDLAGLIVVDFIDMEE +NNR+VE++LK++LK DRAR+
Sbjct: 518 IEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLKDALKNDRARI 577

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           QVG IS+FGLLEMSRQRIR+ VLE +T  C +C GAG +RS +S+AL +LR +E+ L++ 
Sbjct: 578 QVGRISHFGLLEMSRQRIRAGVLEGSTVPCPHCAGAGTVRSTASIALHVLRVLEDALIKS 637

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF-YIEKGSPVQ- 572
            AH+II+ T + V LY+LNQKR  +   E RFGV+I V     L    +  +E+G P   
Sbjct: 638 AAHDIILRTRTVVALYILNQKRTHLQGLERRFGVAITVSADDSLTGTSYHALERGEPASG 697

Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
              +    +       P   ++      +     +   E  E         +
Sbjct: 698 VRELPAAQQPLRAGAPPVDLEDEIEEIDEVETTELEAREREERPVAAQRPPQ 749



 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 93/141 (65%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASH EETRVVVLR NRV+E DFE+  KK ++GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDASHPEETRVVVLRGNRVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR ALL+E + A    +           +     S 
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPVADRIALLEEESRAHQQEDEEPRAHGGRRRSRRRHDSA 120

Query: 121 EEVAPIANFSQETEEESIISA 141
           E+ A   +        +   A
Sbjct: 121 EKRAASGDSVTSENAPADEEA 141


>gi|212712797|ref|ZP_03320925.1| hypothetical protein PROVALCAL_03894 [Providencia alcalifaciens DSM
           30120]
 gi|212684489|gb|EEB44017.1| hypothetical protein PROVALCAL_03894 [Providencia alcalifaciens DSM
           30120]
          Length = 1063

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 197/547 (36%), Positives = 303/547 (55%), Gaps = 8/547 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
             + E  P  +    +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   +++D  Y +R 
Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSCLEIPEGMGLIVRTAGVGKSAESLQQDLLYRLRH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330
           W+ +++ A N  AP L+++E N+I RA RD    DI EI++   K    A++ ++ +   
Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIEAIGRG 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LS+LR +EE 
Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSVLRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  + E E R   V + +V   ++    F++ +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRQAVTEIEQRQRNVRVVIVPNDQMQTPHFHVIRIR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + +    + +    +  + ++  E   + +A      S         + + +      
Sbjct: 491 KGEEVQTLSYNLAQYHETETLNQGEEPTSERKAPEQPAISAFALQEPVEVPALKQKESPS 550

Query: 630 KRRRRRR 636
           K   R +
Sbjct: 551 KAPARPK 557



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|118602451|ref|YP_903666.1| ribonuclease [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567390|gb|ABL02195.1| ribonuclease, Rne/Rng family [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 584

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 160/637 (25%), Positives = 293/637 (45%), Gaps = 82/637 (12%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI+A + EE RV ++++ ++  L+ E+   K+ KGNIY  K++RVE SL+AAFVDYG  
Sbjct: 4   ILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDYGKE 63

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           + GFLPF E+                  +     D +A  + +T  DV       + ++ 
Sbjct: 64  KQGFLPFKEV------------------AETLHNDVKAKGEKLTISDVLKEGQEIIVQIE 105

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
                +                        G+           Y I      +   + + 
Sbjct: 106 KEERGN-----------------------KGAALSTYINLAGAYMILMPNNPKNHGISRQ 142

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           +          + + + L     +++     G        +  + +   +    L     
Sbjct: 143 IVALDRQSLKEIISKIILPNHSGLIIRTAGSG-------KSFEELQWEVDYLSDLWKSIN 195

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304
              + R+A                                  L+Y+E ++I R +RD   
Sbjct: 196 TATLTRSAP--------------------------------FLIYQESDIIIRTLRDHLR 223

Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE-DPHPIFFRSGIEVQLDSLHQTEV 363
            D   +I+   + ++ AK+F+  ++P Y   ++ ++   H +F   GIE Q+ S+   EV
Sbjct: 224 SDTDSVIIDELEAFQNAKEFVSFVLPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREV 283

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
           +L +   ++ + TEAL +ID+NS R+T+   IE+TA  TNLEA +EIA QL+LRD+ GL+
Sbjct: 284 SLRTGAIIVFDPTEALTAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLV 343

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDM  +++  S+EK ++++   DRAR+Q+G IS FGLLEMSRQR+ +SV ES  K 
Sbjct: 344 VIDFIDMASEEHRVSIEKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKP 403

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEY 542
           C+ C G G   +  ++AL+ILR +E+         ++ + +  +V+ Y+LN+KR  I++ 
Sbjct: 404 CSACHGRGTTPTIPTLALTILRQLEDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKL 463

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E + G+ I ++    +    F I K    +   +  ++  S  Q    +  +    +  A
Sbjct: 464 EGKHGIKITLLPNPYMQFPNFTINKQKGSKRSQHKSYQSISKPQHVLAENGLSDQAEIPA 523

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           +     S  + + + ++  +    +  +++++  + R
Sbjct: 524 INVNRPSTRVPEKKISLFEKIKNVLFGRKKKQPNKHR 560


>gi|332141129|ref|YP_004426867.1| RNase E [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551151|gb|AEA97869.1| RNase E [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1134

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 211/662 (31%), Positives = 322/662 (48%), Gaps = 36/662 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +      KF+ +  I++VIK  Q +++QI KEERG KGAA+TT+LSLAG Y VLMP
Sbjct: 72  EIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++  E++ D + L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKESLSKLDLPDGMGLIVRTAGVGKSYEELEWDLKVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ + E+A    AP L+++E N+I RAIRD   +DI EI++     Y +A   ++L+ P 
Sbjct: 191 WEAISEVAEGREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A  V+ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++K++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ ES   VC  C G G IR   S+ALSILR +EE  
Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLALSILRILEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     I       V  YLLN+KR +I   E R GV + ++    L    + + +  P 
Sbjct: 431 IKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTPHYQVLRRRPD 490

Query: 572 QALVNTGHKV----------------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +    + V                    + P+    +              ++  ED+
Sbjct: 491 DVVSEASYDVELMPAVEAETETTTTTPVKREEPALKGLVAPTAAPVVAPKEEPAKKAEDV 550

Query: 616 QD--------------NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                           +   EES    +++     + R     ++        +     +
Sbjct: 551 PSLFARIGKWISDLFGSEGEEESNKDKKQQSTDTNKNRNNRSRNNDDRRRKPRNKNQRRN 610

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           +S     +  D       +N      +  D           +          +  +   +
Sbjct: 611 NSSQNRDQNKDQGRDEQQDNRKARGDQRQDQRQDQDDKRNNKGRKPRKAQQPRDEQQKPK 670

Query: 722 RK 723
            +
Sbjct: 671 HE 672



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI   Y+
Sbjct: 62 AERHGFLPLKEIARTYF 78


>gi|307248485|ref|ZP_07530504.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306855004|gb|EFM87188.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 992

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 602

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                      + +  N   +   K  R 
Sbjct: 603 KQTQAQDEQKAQRQERNQERNEAKKARRQ 631



 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|261346053|ref|ZP_05973697.1| ribonuclease E [Providencia rustigianii DSM 4541]
 gi|282565939|gb|EFB71474.1| ribonuclease E [Providencia rustigianii DSM 4541]
          Length = 1069

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 193/542 (35%), Positives = 297/542 (54%), Gaps = 8/542 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
             + E  P  +    +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   +++D  Y +R 
Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSCLEIPDGMGLIVRTAGVGKSAESLQQDLLYRLRH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330
           W+ +++ A N  AP L+++E N+I RA RD    DI EI++   K    A++ ++ +   
Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIESIGRG 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LS+LR +EE 
Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLSLSVLRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  + + E R   V + +V   ++    F++ +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRQAVTDIEQRQRNVRVVIVPNDQMQTPHFHVIRIR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + +    + +    +  +     E    +      P   +    +   +         
Sbjct: 491 KGEEISTLSYNLAQYHETETLAHADEPSSSERKAPEQPAISAFALQEPVEMPALKPKEAP 550

Query: 630 KR 631
            +
Sbjct: 551 AK 552



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|307246358|ref|ZP_07528435.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253093|ref|ZP_07534975.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255344|ref|ZP_07537155.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257513|ref|ZP_07539278.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307259794|ref|ZP_07541513.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307261925|ref|ZP_07543584.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306852734|gb|EFM84962.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306859428|gb|EFM91459.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861695|gb|EFM93678.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306863983|gb|EFM95901.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306866133|gb|EFM98002.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306868376|gb|EFN00194.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 992

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 602

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                      + +  N   +   K  R 
Sbjct: 603 KQTQAQDEQKAQRQERNQERNEAKKARRQ 631



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|254435343|ref|ZP_05048850.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27]
 gi|207088454|gb|EDZ65726.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27]
          Length = 761

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 216/646 (33%), Positives = 322/646 (49%), Gaps = 31/646 (4%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149
           A+    A+ D     D+ I N    ++ A I        E S+ +   D  ++      +
Sbjct: 8   AEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYGADRQGFLPL 67

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ++V     +    +   +  +Q+V+K  Q L+VQ+ KEERGNKGAA++T++SLAGRY VL
Sbjct: 68  KEVTRSYFQSHQGESGDRPKVQDVLKEGQELVVQVEKEERGNKGAALSTFISLAGRYLVL 127

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   +SR+I        L E  R LE+P GMG+I RTA   +   E++ D  YL+
Sbjct: 128 MPNNPRAGGVSRRIEGEERS-MLLEAMRTLEIPEGMGLITRTAAVGKNAEELQWDLNYLL 186

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            LW +++  A    AP L+Y+E ++I RA+RD    DI EI++     Y+ A DFM+ +M
Sbjct: 187 HLWHSIQAAAEGRPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQRAYDFMRQVM 246

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P   R ++ Y+D   +F R  IE Q+++  Q EV LPS G ++++ TEAL +ID+NS R+
Sbjct: 247 PPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALTTIDINSARA 306

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
            +   IE+TAL TNLEAAEEIARQLRLRDL GLIV+DFIDM   +N R+VE +L+E L++
Sbjct: 307 NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 366

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E+   VC  C G G +R   S+ LS+LR +EE
Sbjct: 367 DRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLGLSVLRLIEE 426

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +++     V  +LLN+KRA +   E R+G  + +V    L   +F IE+  
Sbjct: 427 GAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFLVPNSHLETPVFEIERIK 486

Query: 570 PVQALV---------------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
            V                   N           PS   +   V     L P P+ + +  
Sbjct: 487 DVGKGESRVDKRFEMQSYQMANEPSPKKPALLTPSAIPDEPLVKAGSPLFPKPEPQPVAP 546

Query: 615 IQDNIVSEE--------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +                 +       +     + +  + G +                
Sbjct: 547 KAEPDFLRRFWTAFMKGDQELDVAEVVTQETEVVSEETGERGRLPPRRGRSQGRGRRGSG 606

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES-SNSSSDP 711
                         +G     E+   +     T +M++ + SSS P
Sbjct: 607 RQHNRKENTQGNEGSGVSSGAESGQAASEAKETQDMQNGTESSSAP 652



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 53/76 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+H EE RV ++    +++LD E+  ++Q K NIY  K+TR+EPSL A FVDYG +
Sbjct: 1  MLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYGAD 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          R GFLP  E+   Y+Q
Sbjct: 61 RQGFLPLKEVTRSYFQ 76


>gi|154248587|ref|YP_001419545.1| ribonuclease [Xanthobacter autotrophicus Py2]
 gi|154162672|gb|ABS69888.1| ribonuclease, Rne/Rng family [Xanthobacter autotrophicus Py2]
          Length = 1080

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 297/560 (53%), Positives = 377/560 (67%), Gaps = 1/560 (0%)

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
           L+E+   +T    + D       T   +    E     +      ++       + +   
Sbjct: 253 LREAPEGETHPAPILDIEETPAETRRTETRPVEDDEDEDEDDGDVDQIDEEEEIEHLGAD 312

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ED     PE  P++  R Y IQEVI+ RQ++LVQ+VKEERGNKGAA+TTYLSLAGRYSVL
Sbjct: 313 EDALEEVPERAPQRRARSYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVL 372

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPNT++G  ISRKITN VDRK LKE+ + LEVP GMG+ILRTAGA+RTK+EIKRDFEYL+
Sbjct: 373 MPNTARGGGISRKITNTVDRKRLKEVVQDLEVPEGMGIILRTAGANRTKVEIKRDFEYLL 432

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLW+ VREL L+S AP+LVYEEG+LIKRAIRDLY KDI E+ V+GE+GYREAKDFM++LM
Sbjct: 433 RLWETVRELTLSSAAPNLVYEEGSLIKRAIRDLYNKDIDEVHVAGEEGYREAKDFMRMLM 492

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS+A+ V  Y +P PIF R G+E QLD++    V L S GY++IN TEALVSIDVNSGR+
Sbjct: 493 PSHAKCVLPYREPQPIFARYGVEQQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRA 552

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TREH IEDTAL+TN+EAAEEIARQLRLRDLAGLIVVDFIDMEEK+NNR+VE+KLK+ LK 
Sbjct: 553 TREHHIEDTALKTNVEAAEEIARQLRLRDLAGLIVVDFIDMEEKRNNRAVERKLKDCLKN 612

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS+FGLLEMSRQRIR+ VLES+ +VC +C G G++RS +SV+L +LR++EE
Sbjct: 613 DRARIQIGRISHFGLLEMSRQRIRTGVLESSIEVCPHCGGTGHVRSAASVSLQLLRALEE 672

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKG 568
            LL+   HN+   T ++V LY+LNQKRA + E E RF V++ +V    +   + F IEKG
Sbjct: 673 QLLRAATHNLYARTRTEVALYVLNQKRAHLRELEERFSVTLAIVADESVTGHQPFIIEKG 732

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                                         +DE  +        E   +           
Sbjct: 733 ELAVPPAPAPRPSSVVHPDSILLDEDYAEDEDEETVEETAEAEAEAGPEAEGESGDRADD 792

Query: 629 RKRRRRRRRRRPATDHHDAG 648
             R+RRRRRRR   +  +  
Sbjct: 793 GNRKRRRRRRRRRGEKDETR 812



 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 96/155 (61%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+R NRVEE D+ES  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR AL++E   A   ++  A+             S 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALIEEEERAARLADDEAELKDRRRERGRARRSS 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155
            +        +     +   + +    +  +    
Sbjct: 121 SDRTVSEPVEEAEVVPAEAESASGDAPSGVEASSD 155


>gi|307264115|ref|ZP_07545711.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306870544|gb|EFN02292.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 992

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 199/625 (31%), Positives = 312/625 (49%), Gaps = 13/625 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 602

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714
                      + +  N   +   K
Sbjct: 603 KQTQAQDEQKAQRQERNQERNEAKK 627



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75


>gi|304391819|ref|ZP_07373761.1| ribonuclease E [Ahrensia sp. R2A130]
 gi|303296048|gb|EFL90406.1| ribonuclease E [Ahrensia sp. R2A130]
          Length = 1080

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 288/631 (45%), Positives = 379/631 (60%), Gaps = 5/631 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151
           +       S+    D      +                 +    E   S++  V      
Sbjct: 368 DDEAVAEASDGDDSDAEEKPRSRRGRGRGRGGRSRGRRGENNGSEDETSSDAPVEEVGSP 427

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                     +  +R Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMP
Sbjct: 428 EDALEEVPARRAPRRHYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMP 487

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           NT++G  ISRKITN  DRK LK IA  LEVP GMGVILRTAGASR + +++RDFEYLMRL
Sbjct: 488 NTARGGGISRKITNSADRKRLKSIATSLEVPQGMGVILRTAGASRERTDVERDFEYLMRL 547

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+NVR L L S AP LVYEEG+LIKR+IRDLY  D  EI+V+GE GY+EA+DFM +LMPS
Sbjct: 548 WENVRTLTLESTAPCLVYEEGSLIKRSIRDLYDHDTGEILVAGEAGYKEARDFMSMLMPS 607

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +A+ V+ Y D  P+F R G+E QLD++ Q +VTL S GY+II+QTEALV+IDVNSGRSTR
Sbjct: 608 HAQRVKLYSDRIPLFARMGVEAQLDAMLQPQVTLKSGGYIIIDQTEALVAIDVNSGRSTR 667

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           +H +E+TA+ TNLEAA+E+ARQLRLRDLAGLIV+DFIDM++++N R+VEK+LK++LK+DR
Sbjct: 668 QHSVEETAVNTNLEAADEVARQLRLRDLAGLIVIDFIDMDDRRNVRAVEKRLKDALKQDR 727

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+QVG IS+FGL+EMSRQRIR+SVLESTT++CT C+G G++RS SSV LS+LR+VEE+L
Sbjct: 728 ARIQVGRISHFGLMEMSRQRIRASVLESTTQICTMCEGLGHVRSSSSVVLSVLRAVEEHL 787

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            + +A+++ V   S   LY+LN KR  + + EARFGV+I V     L +    IEKG   
Sbjct: 788 NRSSANDLTVKVSSATALYMLNGKRDNLSDLEARFGVAITVATDESLGNTPCAIEKGELS 847

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS-----EESTG 626
                    V  D+     D +      +      P +E  ED +               
Sbjct: 848 NRTPVADTAVHPDTIEVQADDDTGNAVAETPSDEQPATERNEDGEGTGKKRRRRRRRGGR 907

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                R      + + +  +A      +  +   DD  +    P+               
Sbjct: 908 GRDDNRDENGEAKASEEGANAQSGDAEAQSEPTSDDEGEAPQRPARTKRSRRKPKAEAET 967

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                      +  +  +      P  ++TR
Sbjct: 968 ASEGQAVTENTAAEDASTEEDVPKPTGRRTR 998



 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 93/157 (59%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA H EETRV +++ N+V E DFESEHK QI+GNIYLAKVTRVEPSLQAAFVDY
Sbjct: 3   NNKMLIDAGHPEETRVAIVKGNQVAEFDFESEHKTQIRGNIYLAKVTRVEPSLQAAFVDY 62

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F E+HPDYYQIP +DRQAL+        +  A   +         +    +
Sbjct: 63  GGNRHGFLAFSEVHPDYYQIPVADRQALIDAEAEDARNHAAREAEADAAIDQQDDQSDDD 122

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
             +   +   E   ++    +       E+    S +
Sbjct: 123 NDSDSDDNEVEAAPKTRKRRSRRRSPRNEETSEESDD 159


>gi|30995373|ref|NP_438575.2| ribonuclease E [Haemophilus influenzae Rd KW20]
 gi|1173095|sp|P44443|RNE_HAEIN RecName: Full=Ribonuclease E; Short=RNase E
          Length = 935

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|304413612|ref|ZP_07395056.1| ribonuclease E [Candidatus Regiella insecticola LSR1]
 gi|304283703|gb|EFL92097.1| ribonuclease E [Candidatus Regiella insecticola LSR1]
          Length = 1017

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 190/554 (34%), Positives = 304/554 (54%), Gaps = 15/554 (2%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----DVKGGSPEDVPKKFK 165
           D+ I +    ++ A I        E S+ +A  D  ++                      
Sbjct: 26  DLDIESTGHEQKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLKEISREYFSRDHYSN 85

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I++V+   Q ++VQI KEERGNKGAA+TT++SLAG + VLMPN  +   ISR+I  
Sbjct: 86  TRPKIKDVLHEGQEVIVQIDKEERGNKGAALTTFISLAGCFLVLMPNNPRAGGISRRIEG 145

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + LK     LE+P GMG+I+RTAG  +   +++ D  + ++ W+ +++ A    AP
Sbjct: 146 EERTE-LKATLSTLELPDGMGLIVRTAGLGKNTKDLQWDLSFRLQHWEAIKKAAEGRPAP 204

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-PSYARIVRQYEDPHP 344
            L+++E ++I RA RD   +D+ EI++   K  + A+  +  L  P + + ++ Y+   P
Sbjct: 205 FLIHQESDVIVRAFRDYLRQDLGEILIDNPKTLKLAEKHITDLGRPDFIKKMKLYDGETP 264

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F    IE Q++S  Q EV LPS G ++++ TEAL +ID+NS R+T+   IE+TA  TNL
Sbjct: 265 LFSHYQIESQIESAFQREVRLPSGGSIVVDTTEALTAIDINSARATKGGDIEETARNTNL 324

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAAEEIARQLRLRDL GLIV+DFIDM   ++ R VE++L+E++ +DRAR+Q+G IS FGL
Sbjct: 325 EAAEEIARQLRLRDLGGLIVIDFIDMTPIRHQRDVEQRLREAVHQDRARIQIGRISRFGL 384

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           LEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE  L+     +     
Sbjct: 385 LEMSRQRLNPSLGESSHHVCPRCTGTGSIRDNESLSLSILRLIEEEALKENTVKVHAIVP 444

Query: 525 SDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGSPVQALVNTGH---- 579
             +  YL+N+KR +I   E R  GV   ++    +    + + +    +      +    
Sbjct: 445 VPIASYLINEKRDSINAIENRTNGVRAIIIPTENMQTPNYAVSRIRKGEENTTISYMLAQ 504

Query: 580 KVGSDSQAPSYDKNIECVWQDEA---LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
           +  + + A   +   E   +++     LP+P++ S  +I     S  +  +  K+R+ R 
Sbjct: 505 QYNAGTTAAQEETPNERKQREQPALSALPLPEASSSPEITAVKKSANTASMAPKQRQMRT 564

Query: 637 RRRPATDHHDAGVV 650
           +   ++   D  + 
Sbjct: 565 KSVASSPFDDTSMN 578



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVNGQQLYDLDIESTGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 62 ADRHGFLPLKEISREYF 78


>gi|303252909|ref|ZP_07339067.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302648235|gb|EFL78433.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
          Length = 995

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 605

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                      + +  N   +   K  R 
Sbjct: 606 KQTQAQDEQKAQRQERNQERNEAKKARRQ 634



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|24374321|ref|NP_718364.1| ribonuclease E [Shewanella oneidensis MR-1]
 gi|24348868|gb|AAN55808.1|AE015717_9 ribonuclease E [Shewanella oneidensis MR-1]
          Length = 1088

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 211/647 (32%), Positives = 313/647 (48%), Gaps = 21/647 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A    AP L+++E N+I RAIRD   +D+ EI++   + Y EAK  + L+ 
Sbjct: 189 HHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERVKLYEAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI---------------ECVWQDEALLPIPKSESLED 614
               +  + +K     +A  Y+                       ++ + P+ K E+ + 
Sbjct: 489 TDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQDVAPVAKVEAAKP 548

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              + +                 +   T   D+   +     +           +     
Sbjct: 549 GLFSKLFSAIGSFFSSSDNAATEKSAETKKSDSQATNANRRNRRNDTRRTRNNQDTEKAK 608

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
             +      +                E + S   + P  K      +
Sbjct: 609 EGSREPRARNAKKVADAPQAQERPIREKDESAKRAKPEAKNRSQAPK 655



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|163803776|ref|ZP_02197631.1| ribonuclease E [Vibrio sp. AND4]
 gi|159172417|gb|EDP57288.1| ribonuclease E [Vibrio sp. AND4]
          Length = 1029

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 202/649 (31%), Positives = 317/649 (48%), Gaps = 24/649 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  + ++ AP L+++E N+I RAIRD   +DI EI +     Y  AK+ +KL+ P 
Sbjct: 191 WSAIKGASDSNSAPFLIHQESNVIVRAIRDYLRRDIGEISIDSNTIYERAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVSRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERNQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK------SESLEDIQDNIVSEEST 625
           +      + +    +A    +  E    D     I +      +   +       S E  
Sbjct: 491 EEFDLLSYLLPQKLEAIKEAEGKEPAEVDIKPKRIEEPVLKGFAAPTQTAPAPSASSEPA 550

Query: 626 GVIRKRRRRRRRRRPATDHH------------DAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
              +K+    +  +                     V  +    +     + +      + 
Sbjct: 551 PTAKKKEAEPQEEKQGLFSRLFKALGSFLFGGSEEVKEEPKKDEQKPSRNNNRNKRDRND 610

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              N   +   G     +         +    N +  P  ++ R  +R+
Sbjct: 611 RRRNNQRDNREGRDNRDNKRRRKPREEQATEQNEAQQPSKQQNRNQRRK 659



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109


>gi|229521942|ref|ZP_04411359.1| ribonuclease E [Vibrio cholerae TM 11079-80]
 gi|229340867|gb|EEO05872.1| ribonuclease E [Vibrio cholerae TM 11079-80]
          Length = 1052

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 202/641 (31%), Positives = 320/641 (49%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL-------LPIPKSESLEDIQD 617
           +      +        +         D  ++    +E +            + + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAETVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     +     R  +  A+        + V +      +      E ++  N  
Sbjct: 551 LQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1]
 gi|300073995|gb|ADJ63394.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1]
          Length = 1062

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 203/629 (32%), Positives = 312/629 (49%), Gaps = 11/629 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +  + I        E S+ +   +            
Sbjct: 12  EELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   I+E ++  Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN
Sbjct: 72  EVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR++     ++ L+E    L++P GM VI RTAG  R   E++ D  YLM+LW
Sbjct: 132 NPRGGGVSRRVEGEDRQE-LRETMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             +     ++    L+Y+E +L+ RAIRD +  DI EI++  +  + +A+ FM  +MP  
Sbjct: 191 RAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDM 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALVS+DVNS R+TR 
Sbjct: 251 VHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE TA  TNLEAA+E+ARQLRLRDL GLIV+DFIDME  KN R VE +LK++L  DRA
Sbjct: 311 SDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKDALHHDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+E+SRQR+R S+ E +   C  C G G+IR   S AL +LR ++E  +
Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +  +  I V    DV  +LLN+KR  I++ E R  V++ ++    L    + +E+     
Sbjct: 431 KENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPHYKMERIKHDD 490

Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             L +         QA +     +   +D         + +   Q   + E         
Sbjct: 491 PRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIVERKAPEPVAA 550

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
                   P T   ++G++  + S       +      P +       E   +G   + +
Sbjct: 551 PV-----PPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGRGGDRN 605

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                 +     +          + R  +
Sbjct: 606 GRNRNRNERGDRAERGERAERNGEQRNGR 634



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++   ++ ++D E+  ++Q K NIY   +TR+EPSL+A FV+YG
Sbjct: 2   KRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF E+   Y++     R A +KE+     +     +    G+
Sbjct: 62  EERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGN 110


>gi|145630414|ref|ZP_01786195.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021]
 gi|145638676|ref|ZP_01794285.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII]
 gi|144984149|gb|EDJ91586.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021]
 gi|145272271|gb|EDK12179.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII]
 gi|309750169|gb|ADO80153.1| Ribonuclease E [Haemophilus influenzae R2866]
          Length = 938

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 200/650 (30%), Positives = 319/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 611 ERNEEQVRNVRERNQRRPRRNLVEESITESAVNSTPVFEAKEERTEPVTQ 660



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|303250946|ref|ZP_07337135.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650163|gb|EFL80330.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 995

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 605

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                      + +  N   +   K  R 
Sbjct: 606 KQTQAQDEQKAQRQERNQERNEAKKARRQ 634



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|332288915|ref|YP_004419767.1| ribonuclease E [Gallibacterium anatis UMN179]
 gi|330431811|gb|AEC16870.1| ribonuclease E [Gallibacterium anatis UMN179]
          Length = 996

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 201/655 (30%), Positives = 320/655 (48%), Gaps = 30/655 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+++++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPEGYVYQGRPNIRDILQEGQEVIVQVSKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LEVP G+G+I+RTAG  R+  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALSSLEVPDGVGLIVRTAGVGRSPEELQWDLHVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + + K+ +KL+ P 
Sbjct: 191 WEAIKQASESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSRKVFDKVKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHFQIESQIESAFQREVQLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPARHQREVENRMREAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ EST  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLNESTHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I + E R  V I VV   ++    F + +    
Sbjct: 431 LKEHTKQVHTIVPVKIATYLLNEKRKAITDIEKRHNVQIVVVPHEQMETPHFSVFRLRDG 490

Query: 572 Q------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
           +              +             + D +          +   +    E      
Sbjct: 491 EDNHTLSYNLAKLHDIQEDADGEESLVNRAIDLSNSTTTNPTPEVAAVEITISEPAPLVK 550

Query: 620 VSEESTGVIRK-----------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
             E    ++ +             +  + ++    + +     +        D   +   
Sbjct: 551 KEEVKASLLTRILKKLKAFFADNTQEEKEKQNRNRNGNKRPRRNDKENNRQKDRRNEERR 610

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   N  E           V   P S    +  + + +   K+ +   RR+
Sbjct: 611 TKDASNTSNKEELKRTKRANRKAVDEAPDSVSVAKKVDETKE-NSKEQQIASRRQ 664



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254520928|ref|ZP_05132983.1| ribonuclease G [Stenotrophomonas sp. SKA14]
 gi|219718519|gb|EED37044.1| ribonuclease G [Stenotrophomonas sp. SKA14]
          Length = 495

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 236/565 (41%), Gaps = 73/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1   MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   ++       P +                   + D  +  +  P    +
Sbjct: 60  VGLERAAFLHANDVVRP---APVA-------------------SADTENTTLPPPASVPI 97

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E+            +  I               G+          +Y +         +
Sbjct: 98  VELLRDGQDIVVQVVKDPIGT------------KGARLTTQISIPSRYMVLLPQSKVVGV 145

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +  A+ T          L         I R        + + E    L 
Sbjct: 146 SARIEDETERARLKALVTE---------LSAQHGGYGYIVRTNAEGQPAEAIAEDIAYLS 196

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 V+ R    + +   I  D    +R   ++                         
Sbjct: 197 RVWN--VVERRGREAASCSIIYEDLSLPLRSVRDLIRK---------------------- 232

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                D+ ++ V  ++ + + + F+   MP  A  +  Y    PIF   G+E ++     
Sbjct: 233 -----DVDKVKVDSKETFGQLQAFVAKYMPVLAEKLELYSGDRPIFDMFGVEDEIGRALD 287

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQLRLR+L 
Sbjct: 288 KQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLG 347

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R   S+    
Sbjct: 348 GIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYDFSPLGLVEMTRKRTVESLERQL 407

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C  C G G I++  +V   I R +   + Q+ A  ++V   + VV  + +++ + + 
Sbjct: 408 SETCPQCSGRGSIKTTETVTYEIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVA 467

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G SI      +   + F +
Sbjct: 468 ELEEFLGKSIRFQADEQYLQEQFDV 492


>gi|194366672|ref|YP_002029282.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3]
 gi|194349476|gb|ACF52599.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3]
          Length = 495

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 237/565 (41%), Gaps = 73/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1   MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   ++       P +                   + D  +  +  P+   +
Sbjct: 60  VGLERAAFLHANDVVRP---APVA-------------------SADTENTTLPPPSSVPI 97

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E+            +  I               G+          +Y +         +
Sbjct: 98  VELLRDGQDIVVQVVKDPIGT------------KGARLTTQISIPSRYMVLLPQSKVVGV 145

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +  A+ T          L         I R        + + E    L 
Sbjct: 146 SARIEDEGERARLKALVTE---------LSAQHGGYGYIVRTNAEGQPAEAIAEDVAYLS 196

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 V+ R    + +   I  D    +R   ++                         
Sbjct: 197 RVWN--VVERRGREAASCSNIYEDLSLPLRSVRDLIRK---------------------- 232

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                D+ ++ V  ++ + + + F+   MP  A  +  Y    PIF   G+E ++     
Sbjct: 233 -----DVDKVKVDSKETFAQLQAFVAKYMPVLAEKIELYSGDRPIFDMFGVEDEIGRALD 287

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQLRLR+L 
Sbjct: 288 KQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLG 347

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R   S+    
Sbjct: 348 GIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYDFSPLGLVEMTRKRTVESLERQL 407

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C  C G G I++  +V   I R +   + Q+ A  ++V   + VV  + +++ + + 
Sbjct: 408 SETCPQCSGRGTIKTTETVTYEIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVA 467

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G SI      +   + F +
Sbjct: 468 ELEEFLGKSIRFQADEQYLQEQFDV 492


>gi|77166294|ref|YP_344819.1| ribonuclease E and G [Nitrosococcus oceani ATCC 19707]
 gi|76884608|gb|ABA59289.1| RNAse E [Nitrosococcus oceani ATCC 19707]
          Length = 764

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 216/646 (33%), Positives = 322/646 (49%), Gaps = 31/646 (4%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149
           A+    A+ D     D+ I N    ++ A I        E S+ +   D  ++      +
Sbjct: 11  AEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYGADRQGFLPL 70

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ++V     +    +   +  +Q+V+K  Q L+VQ+ KEERGNKGAA++T++SLAGRY VL
Sbjct: 71  KEVTRSYFQSHQGESGDRPKVQDVLKEGQELVVQVEKEERGNKGAALSTFISLAGRYLVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   +SR+I        L E  R LE+P GMG+I RTA   +   E++ D  YL+
Sbjct: 131 MPNNPRAGGVSRRIEGEERS-MLLEAMRTLEIPEGMGLITRTAAVGKNAEELQWDLNYLL 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            LW +++  A    AP L+Y+E ++I RA+RD    DI EI++     Y+ A DFM+ +M
Sbjct: 190 HLWHSIQAAAEGRPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQRAYDFMRQVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P   R ++ Y+D   +F R  IE Q+++  Q EV LPS G ++++ TEAL +ID+NS R+
Sbjct: 250 PPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALTTIDINSARA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
            +   IE+TAL TNLEAAEEIARQLRLRDL GLIV+DFIDM   +N R+VE +L+E L++
Sbjct: 310 NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E+   VC  C G G +R   S+ LS+LR +EE
Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLGLSVLRLIEE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +++     V  +LLN+KRA +   E R+G  + +V    L   +F IE+  
Sbjct: 430 GAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFLVPNSHLETPVFEIERIK 489

Query: 570 PVQALV---------------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
            V                   N           PS   +   V     L P P+ + +  
Sbjct: 490 DVGKGESRVDKRFEMQSYQMANEPSPKKPALLTPSAIPDEPLVKAGSPLFPKPEPQPVAP 549

Query: 615 IQDNIVSEE--------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +                 +       +     + +  + G +                
Sbjct: 550 KAEPDFLRRFWTAFMKGDQELDVAEVVTQETEVVSEETGERGRLPPRRGRSQGRGRRGSG 609

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES-SNSSSDP 711
                         +G     E+   +     T +M++ + SSS P
Sbjct: 610 RQHNRKENTQGNEGSGVSSGAESGQAASEAKETQDMQNGTESSSAP 655



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++    +++LD E+  ++Q K NIY  K+TR+EPSL A FVDYG
Sbjct: 2  KRMLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +R GFLP  E+   Y+Q
Sbjct: 62 ADRQGFLPLKEVTRSYFQ 79


>gi|229844425|ref|ZP_04464565.1| ribonuclease E [Haemophilus influenzae 6P18H1]
 gi|229812674|gb|EEP48363.1| ribonuclease E [Haemophilus influenzae 6P18H1]
          Length = 938

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 200/650 (30%), Positives = 319/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 611 ERNEEQVRNVRERNQRRPRRNLVEESITESAVNSTPVFEAKEERTEPVTQ 660



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|145632660|ref|ZP_01788394.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655]
 gi|145636318|ref|ZP_01791987.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH]
 gi|144986855|gb|EDJ93407.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655]
 gi|145270483|gb|EDK10417.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH]
          Length = 938

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 199/650 (30%), Positives = 317/650 (48%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +   +   P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLVSRNVETTVVTEQPAVESAVVALSISEAAPTPVER 550

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 611 ERNEEQVRNVRERNQRRPRRNLVEESITESAVNSTPVFEAKEERTEPVTQ 660



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|323495018|ref|ZP_08100107.1| ribonuclease E [Vibrio brasiliensis LMG 20546]
 gi|323310675|gb|EGA63850.1| ribonuclease E [Vibrio brasiliensis LMG 20546]
          Length = 980

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 199/632 (31%), Positives = 315/632 (49%), Gaps = 7/632 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ +  + AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WGAIKQASDANAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +L++S++ DR
Sbjct: 311 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQDVKITVVPNSDMETPHFDVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +    +A    +  E V  +     I +            +  +   + K 
Sbjct: 491 EEFDLLSYLLPKKIEALKEAEGKEPVETEVKPKKIEEPALKGFAAPTQSAP-APSPVAKA 549

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             ++  R    +     V     ++ + +  S +   +  +       E   +       
Sbjct: 550 PEKKVERAEQQESQPGLVSRFFKALGSFLFGSSEQEEKKEEQQPKERKEGNRNNRNRRNR 609

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +  +  + N       K+       K
Sbjct: 610 NDNRRRNNRDNRNENREDKRDNKRKNTRDEAK 641



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109


>gi|190150765|ref|YP_001969290.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189915896|gb|ACE62148.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 995

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 199/625 (31%), Positives = 312/625 (49%), Gaps = 13/625 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           + L    + +      +      N   V ++  +       ++E +  +           
Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               +     P+        V    + +   ++             +           E 
Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 605

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714
                      + +  N   +   K
Sbjct: 606 KQTQAQDEQKAQRQERNQERNEAKK 630



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|269302751|gb|ACZ32851.1| ribonuclease, Rne/Rng family [Chlamydophila pneumoniae LPCoLN]
          Length = 515

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 161/566 (28%), Positives = 289/566 (51%), Gaps = 65/566 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N++L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +  ++Q+AF++
Sbjct: 1   MENEILLNI-ESKEIRYAHLKNGQLFDLIIERKKVRQLKGNIYRGRVTNILRNIQSAFIN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                +GF+   +I            +   K   +   D +A+ ++ +   +    +  +
Sbjct: 60  IDERENGFIHISDI-----------LENSKKFEQMFDMDVDALPEEASEAPLLSSEEAPI 108

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE                                                   +K    +
Sbjct: 109 EE--------------------------------------------------FLKLDSPV 118

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G+KGA +T+ +S+ GRY VL+PN+     +SRKI +P  R+ LK++ R  E
Sbjct: 119 LVQVVKEPIGSKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMREQLKQLIRSFE 177

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  + +   +  +   L+  W  + E   ++  P L+Y E +++K+A+ 
Sbjct: 178 MPQDMGLICRTASTTASTEALINEAHDLLLTWKTILEKFYSTEQPCLLYSETDILKKAVI 237

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K+   +++     Y++ K  +K   P  +  +  Y D  P+F R  IE ++D   +
Sbjct: 238 TCIDKNYKRLLIDDYATYQKCKHMLKKYSPDASIKIEYYRDSIPMFERFNIEKEIDKATR 297

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 298 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 357

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 358 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 417

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL-NQKRAT 538
              +C YC G   I++  SV + I R +++ +      ++ +  H ++  Y+        
Sbjct: 418 LFTLCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHSHLCLVVHPEIASYMKQENDDNE 477

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 478 MINLAKQLKAKLQINTSDSVHLNHYQ 503


>gi|114047967|ref|YP_738517.1| RNAse E [Shewanella sp. MR-7]
 gi|113889409|gb|ABI43460.1| RNAse E [Shewanella sp. MR-7]
          Length = 1095

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 212/649 (32%), Positives = 314/649 (48%), Gaps = 21/649 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A +  AP L+++E N+I RAIRD   +D+ EI++   + Y EAK  + L+ 
Sbjct: 189 HHWAAITEAAQSRNAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +  + +K     +A  Y+    E        L    +    +     V+ +     
Sbjct: 489 TDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQAAAPVANKVEATE 548

Query: 629 R--------------KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                              +    +           ++ +      D       + +D  
Sbjct: 549 PGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTRNNQDADKA 608

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                E       +  D           +  N+       K+R    ++
Sbjct: 609 KEGTREPRTRNAKKAADAPQAQERPAREKDENAKRTKPEPKSRNQAPKE 657



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|307822684|ref|ZP_07652915.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96]
 gi|307736288|gb|EFO07134.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96]
          Length = 819

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 213/650 (32%), Positives = 323/650 (49%), Gaps = 17/650 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+    +   D E  + +    ++       +E     A  +   E+   +  
Sbjct: 11  PEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIVTHVEPSLEAAFVNYGAEKHGFLPF 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                      +G   +       R+  I+++IK  Q ++VQI KEERGNKGAA+TTY+S
Sbjct: 71  KEISPLYRHLQEGVEND------GRRPAIKDLIKEGQEIVVQIEKEERGNKGAALTTYIS 124

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAG Y VLMPN  K   ISR+I     R +L+E+   LE+P  MG+I+RTAG  +   E+
Sbjct: 125 LAGTYLVLMPNNPKAGGISRRIEG-ETRSDLREVMAALEIPESMGLIVRTAGCGKNVEEL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  YL++LW+ +   +    AP LV++E N+I RA+RD    +I EI++  E  ++  
Sbjct: 184 QWDLNYLLQLWEAIERSSSEQSAPFLVFQESNVIIRALRDHLRGNIDEILIDNEDAFKLV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           ++F+K +MP +    + Y+D  P+F R  IE Q++  +  EV+LPS G ++I+ TEAL S
Sbjct: 244 QNFLKQVMPHFLPKAKLYQDAVPLFNRYQIESQIEVAYGREVSLPSGGSIVIDHTEALTS 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NS R+T+   IE+TAL TNLEAA+EIARQLRLRDL GL V+DFIDM   KN ++VE 
Sbjct: 304 IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQKTVEN 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+++LK DRAR+Q   IS FGLLEMSRQR+R S+ +ST   C  CKG G IR+  SVAL
Sbjct: 364 HLRDALKIDRARIQTSRISRFGLLEMSRQRMRPSLGDSTQLPCPRCKGQGTIRNVESVAL 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S+LR +EE  ++     +I H   +   +LLN+KR+ I + E R  V I ++    L   
Sbjct: 424 SVLRILEEEAMKKGTEKVIAHLPIECATFLLNEKRSAIEQIENRLKVGIVILPSKHLETP 483

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            + IE+    ++       +   ++  +  +  + +    A   I +            +
Sbjct: 484 AYDIERIKEKESGDGKASYLQIKAEDITIPEFAQQIKPSTAKAAIKEFLHDSPAPVQSKN 543

Query: 622 EEST----------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
           E ++          G       + +             V +    +N  D       +  
Sbjct: 544 ESASLIQRFWHKLVGPSASTEPKAKVTAAVQTTERIKPVDEGQPRKNRGDRQGQGQTQDR 603

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                     G H   E    S    +       N  +    +  R   R
Sbjct: 604 GRGRGRGQGRGQHPSQEQAQASEQVQAPKPKPEQNPDAPRPNRPPRGQGR 653



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 51/76 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ + D E   K+Q K NIY   VT VEPSL+AAFV+YG
Sbjct: 2  KRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIVTHVEPSLEAAFVNYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            +HGFLPF EI P Y
Sbjct: 62 AEKHGFLPFKEISPLY 77


>gi|331657146|ref|ZP_08358108.1| ribonuclease E (RNase E) [Escherichia coli TA206]
 gi|331055394|gb|EGI27403.1| ribonuclease E (RNase E) [Escherichia coli TA206]
          Length = 1058

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 488 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 548 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 607



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|167570711|ref|ZP_02363585.1| ribonuclease E [Burkholderia oklahomensis C6786]
          Length = 711

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 194/531 (36%), Positives = 295/531 (55%), Gaps = 7/531 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I      +    I        E S+ +   +   +        
Sbjct: 9   EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++LW
Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187

Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +   + +     P L+Y E +L+ RAIRD +  DI EI++   + Y +A+ FM ++MP
Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+T
Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK D
Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E 
Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+   
Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             A ++        ++  + +   E  +   A    P+ E+          
Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEEAKPRQEAAVKGITPERP 538



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|77360756|ref|YP_340331.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
           member of the degradosome; involved in the production of
           deoxyribonucleotides via the formation of NDPs
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875667|emb|CAI86888.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
           member of the degradosome; involved in the production of
           deoxyribonucleotides via the formation of NDPs
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1071

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 186/552 (33%), Positives = 291/552 (52%), Gaps = 7/552 (1%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
             F  +  I++VIK  Q ++VQ+ KEERG KGAA+TT++S+AG Y VLMPN  +   ISR
Sbjct: 82  YTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISR 141

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           +I      + LKE    LE+P GMG+I+RTAG  ++  E+  D + L+  W+ +   A +
Sbjct: 142 RIEGDERTE-LKESLSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIGVAADS 200

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
           + AP L+++E N+I RAIRD   +DI EI++   + + EAK  ++   P +   V+ Y+ 
Sbjct: 201 AKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQG 260

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS ++T+   IE+TAL 
Sbjct: 261 DTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATKGGDIEETALN 320

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +LK++++ DRARVQ+G IS 
Sbjct: 321 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRPDRARVQIGKISR 380

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGLLEMSRQR+R S+ E++   C  C G G IRS  S+ALSILR +EE  ++     +  
Sbjct: 381 FGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIALSILRLIEEEAIKDNTAQVNA 440

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                V  YLLN++R ++   E +    I ++    +    + + +    + +    +  
Sbjct: 441 QVPVAVAAYLLNEQRRSVHRMEKQHKCDIVIIPNQHMETPHYEVMRLRKDETIETVSYGQ 500

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
               +  +++ +         + P+ +   L+ +                     + +  
Sbjct: 501 IVAPEPEAFEMS------KSPVAPVREEPMLKGVVMPAAPAPQAAPANVVAPAETKAQSG 554

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                      + + + V     +   +  +  ++    +       N      P S P 
Sbjct: 555 LLDAIGKWFKSLFASETVEVKKEETQKQQQETRDNTRNNDNRRRNNNNQRRRNNPRSKPR 614

Query: 702 MESSNSSSDPIV 713
            E +        
Sbjct: 615 TERTADEEVKTN 626



 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFV+YG
Sbjct: 2  KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI   Y+
Sbjct: 62 ADRHGFLPLKEIARTYF 78


>gi|194366451|ref|YP_002029061.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3]
 gi|194349255|gb|ACF52378.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3]
          Length = 1091

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 200/501 (39%), Positives = 289/501 (57%), Gaps = 5/501 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  +  D+ I      ++ + I        E S+ +A  +          
Sbjct: 10  QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGGRHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I        LK+    L +P  MGVI+RTAG  R   E++ D +YL+ 
Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLNIPDDMGVIIRTAGVGRDAEELQWDLDYLLN 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W  + E AL+  AP L+Y+E  LI RA+RD    DI EI+V  E+ Y  AK+FM+ +MP
Sbjct: 189 VWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAKEFMQQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y+D  P+F R  IE Q++  ++  V LPS G ++++QTEAL ++DVNS R+T
Sbjct: 249 QTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R VE +L  +LK D
Sbjct: 309 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLANALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  YLLN+KR+ + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPHYAVTRLRD 488

Query: 571 VQALVNTGHKVGSDSQAPSYD 591
            +    +G             
Sbjct: 489 NELGEESGRPSYQRGTPRKLP 509



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++ R+EPSL+AAFV+YG
Sbjct: 2   KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           G RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  GGRHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGN 110


>gi|113970740|ref|YP_734533.1| RNAse E [Shewanella sp. MR-4]
 gi|113885424|gb|ABI39476.1| RNAse E [Shewanella sp. MR-4]
          Length = 1093

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 211/649 (32%), Positives = 315/649 (48%), Gaps = 21/649 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A +  AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 189 HHWAAITEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +  + +K     +A  Y+    E        L    +    +     V+ +     
Sbjct: 489 TDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQAAAPVANKVEATE 548

Query: 629 R--------------KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                              +    +           ++ +      D       + +D  
Sbjct: 549 PGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTRNNQDADKA 608

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                E       ++ D           +  N+       K+R    ++
Sbjct: 609 KEGTREPRTRNAKKSADAPQAQERPAREKDENAKRTKPEPKSRNQAPKE 657



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|312962574|ref|ZP_07777064.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6]
 gi|311283154|gb|EFQ61745.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6]
          Length = 1058

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 217/604 (35%), Positives = 315/604 (52%), Gaps = 4/604 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 28  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 88  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 266

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E L+ DRAR
Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 386

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 387 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 506

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
             ++G      + A +  + ++       L+    +      + N               
Sbjct: 507 EAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPMPVEPAAPVAAPA 566

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                        + V    +  +       +         N             N    
Sbjct: 567 ALPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGRQQSRNRNGRRD 626

Query: 694 IPPV 697
               
Sbjct: 627 EERK 630



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 18  KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 78  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122


>gi|309972428|gb|ADO95629.1| Ribonuclease E [Haemophilus influenzae R2846]
          Length = 935

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 191/591 (32%), Positives = 312/591 (52%), Gaps = 17/591 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           + +    + +     A   +     V ++     + +  ++E     +   E+     +R
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLVSRNVETTVVTEQPAVESAVVALSISEAAPTPVER 550

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +            ++  +++ + +    +  +     +P +          
Sbjct: 551 K-----------SNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRN 590



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|152979495|ref|YP_001345124.1| ribonuclease [Actinobacillus succinogenes 130Z]
 gi|150841218|gb|ABR75189.1| ribonuclease, Rne/Rng family [Actinobacillus succinogenes 130Z]
          Length = 962

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 195/548 (35%), Positives = 304/548 (55%), Gaps = 8/548 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQHLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       +  +  I++VIK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPADYVYNGRPNIKDVIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERIE-LKEALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++++ N  AP L+++E ++I RAIRD   +DI EI+V   K Y +AK  +KL+ P 
Sbjct: 191 WEAIKQVSENRPAPFLIHQESDVIVRAIRDYLRRDIGEILVDSPKIYEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   ++ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL++ID+NS RSTR
Sbjct: 251 FINRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALIAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++E++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES++ +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSSHICPRCQGTGKVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENSKQVQCIVPVQIASYLLNEKRKAIRSIEKRHNVDIVVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           +      + +    + Q   +      + ++     +      E    ++   E+  VI 
Sbjct: 491 EEANVLSYHLPKLHEVQEDVFVAEESLISRNIETAAVTAENMAESAVLSMTIPEAAPVIE 550

Query: 630 KRRRRRRR 637
            ++     
Sbjct: 551 AKKEAESS 558



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++    + +LD ES   +Q K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQHLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|190575341|ref|YP_001973186.1| putative ribonuclease G [Stenotrophomonas maltophilia K279a]
 gi|190013263|emb|CAQ46897.1| putative ribonuclease G [Stenotrophomonas maltophilia K279a]
          Length = 495

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 236/565 (41%), Gaps = 73/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1   MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   ++       P +                   + D  +  +  P    +
Sbjct: 60  VGLERAAFLHANDVVRP---APVA-------------------SADTENTTLPPPASVPI 97

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            E+            +  I               G+          +Y +         +
Sbjct: 98  VELLRDGQDIVVQVVKDPIGT------------KGARLTTQISIPSRYMVLLPQSKVVGV 145

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +  A+ T          L         I R        + + E    L 
Sbjct: 146 SARIEDEAERARLKALVTE---------LSAQHGGYGYIVRTNAEGQPAEAIAEDIAYLS 196

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 V+ R    + +   I  D    +R   ++                         
Sbjct: 197 RVWN--VVERRGREAASCSNIYEDLSLPLRSVRDLIRK---------------------- 232

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                D+ ++ V  ++ + + + F+   MP  A  +  Y    PIF   G+E ++     
Sbjct: 233 -----DVDKVKVDSKETFAQLQAFVAKYMPVLAEKLELYSGDRPIFDMFGVEDEIGRALD 287

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQLRLR+L 
Sbjct: 288 KQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLG 347

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R   S+    
Sbjct: 348 GIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYDFSPLGLVEMTRKRTVESLERQL 407

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           ++ C  C G G I++  +V   I R +   + Q+ A  ++V   + VV  + +++ + + 
Sbjct: 408 SETCPQCSGRGSIKTTETVTYEIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVA 467

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G SI      +   + F +
Sbjct: 468 ELEEFLGKSIRFQADEQYLQEQFDV 492


>gi|283784874|ref|YP_003364739.1| ribonuclease E [Citrobacter rodentium ICC168]
 gi|282948328|emb|CBG87913.1| ribonuclease E [Citrobacter rodentium ICC168]
          Length = 1076

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 200/670 (29%), Positives = 318/670 (47%), Gaps = 54/670 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI------------- 615
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPEPAEPVVKA 550

Query: 616 --------------------------------QDNIVSEESTGVIRKRRRRRRRRRPATD 643
                                           ++   +E+      ++  R++ RR   +
Sbjct: 551 AAPKAAAAPAAPAEPGLLSRLFGALKSLFSGGEEAKPAEQPAPKAAEKPERQQDRRKRQN 610

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
           +       +  S +    D+     E  +  + N         + + D         E  
Sbjct: 611 NRRDRNDRNERSERRDSRDNRSERAESGESRDENRRNRRQAQQSADRDNRQQTAEVAEKA 670

Query: 704 SSNSSSDPIV 713
            S     P  
Sbjct: 671 KSGDEQQPQP 680



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 1/147 (0%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +            ++ P   ++      +          S      +  SE +     +
Sbjct: 582 GEEAKPAEQPAPKAAEKPERQQDRRKRQNNRRDRNDRNERSERRDSRDNRSERAESGESR 641

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
              RR RR+      D       + +        +   +P    N    E       E  
Sbjct: 642 DENRRNRRQAQ-QSADRDNRQQTAEVAEKAKSGDEQQPQPRRERNRRRSEEKRQAQQEVK 700

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +SI    T + E          ++ +
Sbjct: 701 ALSIDEQQTQDTEQEERVRPAQPRRKQ 727


>gi|227357741|ref|ZP_03842090.1| ribonuclease E [Proteus mirabilis ATCC 29906]
 gi|227162070|gb|EEI47084.1| ribonuclease E [Proteus mirabilis ATCC 29906]
          Length = 1173

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 198/592 (33%), Positives = 306/592 (51%), Gaps = 15/592 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   +++D  Y +R 
Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLDIPDGMGLIVRTAGVGKSAEALQQDLSYRLRH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330
           WD +++ A +  AP L+++E N+I RA RD    DI EI++   K    A+  ++ +   
Sbjct: 191 WDAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMARSHIEAIGRG 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  +R Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LS+LR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  + + E R   V + +V   ++    F + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQANVKVVIVPNDQMQTPHFSVIRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +       +     +    ++  +P  K+     I    + + S     
Sbjct: 491 KGEEISSLSYNL-------AQYHETQLNEAEDEAVPERKAPEQPAISAFALQDNSADTTN 543

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           K++      +              S+I     + F    EP         + 
Sbjct: 544 KKKSAPTPAKQVKKSETTESGGFFSAIAKFFSNLFASQPEPVVEEKPQESKK 595



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|188534162|ref|YP_001907959.1| ribonuclease E [Erwinia tasmaniensis Et1/99]
 gi|188029204|emb|CAO97076.1| Ribonuclease E [Erwinia tasmaniensis Et1/99]
          Length = 1136

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 199/636 (31%), Positives = 313/636 (49%), Gaps = 13/636 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSNYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +      + +        +     E   +     P   +  + +              
Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPEAPPAPQEAAPEKTA 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K   + +    A     + +VS +  +    + S +   +P  +     +   +    E
Sbjct: 551 PKAVVKSQAPAAAQPGLISRLVSGLKKLFAAPEKSAE---QPEQLVVEEKIAASSAPRGE 607

Query: 689 NYDVSIPPVSTPEM-ESSNSSSDPIVKKTRWWKRRK 723
             +            E +  ++D   +  R   R +
Sbjct: 608 RRNNRRQNNRRDRNGERTERNADRGERNDRNADRNE 643



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|291617028|ref|YP_003519770.1| Rne [Pantoea ananatis LMG 20103]
 gi|291152058|gb|ADD76642.1| Rne [Pantoea ananatis LMG 20103]
          Length = 1097

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 188/518 (36%), Positives = 281/518 (54%), Gaps = 9/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPDGMGLIVRTAGVGKSAESLQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAADSRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR  +   E R  GV   +V    +    + + +  
Sbjct: 431 ALKDNTKEVHAIVPVPVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606
             +      + +        +     E   +     P 
Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPA 528



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|322513325|ref|ZP_08066445.1| ribonuclease E [Actinobacillus ureae ATCC 25976]
 gi|322120879|gb|EFX92733.1| ribonuclease E [Actinobacillus ureae ATCC 25976]
          Length = 992

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 205/659 (31%), Positives = 325/659 (49%), Gaps = 33/659 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   VR YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q G IS FGLLEMSRQR+  S+ E+++ VC  C+G G +R   S+ALSILR +EE  
Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--------- 620
           + L    + +     ++      N   V ++  +       ++E +  +           
Sbjct: 491 EVLPTLSYDLAKHYHAREDDVQPNTHTVSEEALVTRNEPVITVESVLQSSELNLQLAPTP 550

Query: 621 ----------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
                                   +   + + + R   +  +     +    Q       
Sbjct: 551 AAPAKPSLLSRLIAKVKSLFAAEEKVEEKPKPKARNQRERRNRRERPNRGERQERKQQQQ 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           D         N    E+         +V+  P +  E        + + ++ +    RK
Sbjct: 611 DEQKAQRQERNQERAESKKARRQVVEEVAGAPETQTEQAQRPQRENQVAERRQRRDLRK 669



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|254283338|ref|ZP_04958306.1| ribonuclease E [gamma proteobacterium NOR51-B]
 gi|219679541|gb|EED35890.1| ribonuclease E [gamma proteobacterium NOR51-B]
          Length = 946

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 193/572 (33%), Positives = 304/572 (53%), Gaps = 9/572 (1%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++            + +  I++V+K    LLVQ+ KEERG+KGAA+T+++SLAGRY VL
Sbjct: 71  KEIAHQYYRTNAPSGEGRVKIRDVLKEGTELLVQVDKEERGSKGAALTSFISLAGRYMVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  K   ISR+I      + L++    L +P GMGVI+RTAG  R+  E++ D +YL+
Sbjct: 131 MPNNPKAGGISRRIEGDDRSE-LRDALAELNIPDGMGVIIRTAGVGRSSEELQWDLDYLL 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           +LWD +   A ++ +P L+Y+E ++I R+IRD    D+ ++++     Y++A DF+ ++M
Sbjct: 190 QLWDAIETAANDNKSPVLLYQESDVIIRSIRDYLRDDVDQVLIDDPVAYKQASDFVSMVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P Y++ ++ YEDP P+F R  +E Q+++    EV LPS G ++I+ TEALVSID+NS R+
Sbjct: 250 PKYSQRIKFYEDPIPLFNRFQVEGQIETAFSREVRLPSGGSIVIDPTEALVSIDINSARA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE TAL TNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE +++++L+ 
Sbjct: 310 TKGSDIEQTALNTNLEAAEEIARQLRLRDMGGLIVIDFIDMNASKNQRAVENRIRDALEI 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S+ L+ILR + E
Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGETSGMVCPRCTGQGTIRDTKSLGLAILRLMLE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +      DV  +LLN+KRA + + EA+  V + ++    +    F + +  
Sbjct: 430 EATKEKTAEVRAIVPVDVAAFLLNEKRAAVNDIEAQSSVRLLIIPNPHMETPHFELVRLR 489

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      H    + + P     ++      A+ P      +   Q             
Sbjct: 490 EDEVEEEETHSFDVEIETP-PPMAVQEEENTAAIAPQALVRGVTPSQPAPAQVAPAVAEA 548

Query: 630 KRRRRRRRRRPATDHHD-------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                      A            + + +   + ++    + +     ++  N    ++ 
Sbjct: 549 PAAPVAAPTPAAAPSKPGLVSKFLSTLFAPAPAPEDTSSATEEEAASTTERENTESSDDQ 608

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                               + S+S      +
Sbjct: 609 GRSRDGQRRSRGGRNRRRGGKRSDSEQASESQ 640



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KMLI+A+  EE RV ++   R+ +LD E+  +   K N+Y AKVTRVEPSL+AAFVD+G
Sbjct: 2   KKMLINATQAEEVRVALVDGQRLYDLDIENRSRVATKANVYKAKVTRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQI--PFSDRQALLKESNIAQTDSEAVADDVTHG 110
            +RHGFLP  EI   YY+   P  + +  +++     T+     D    G
Sbjct: 62  ADRHGFLPLKEIAHQYYRTNAPSGEGRVKIRDVLKEGTELLVQVDKEERG 111



 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 42/158 (26%), Gaps = 1/158 (0%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQD 617
                 +E     +   +        + A   +     V     +      E   E + +
Sbjct: 764 ESADATVEPTQAAEVDADKPSTEPVPAAASESENETAEVESSATVADQQPQEAPAETVAE 823

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
             V+       + +   ++   P      +   +  +S   + +    +           
Sbjct: 824 EPVAAPEAAEEQPKPVAKKTAVPTPQPAPSEADAAPASRAGLTEKGRAINDPRVAPKPVA 883

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +       +       PPVS    +   +S+DP +K+
Sbjct: 884 EVSVETAHTSLFAAPEAPPVSVISQDVPRASNDPRLKR 921


>gi|197284737|ref|YP_002150609.1| ribonuclease E [Proteus mirabilis HI4320]
 gi|194682224|emb|CAR41936.1| ribonuclease E [Proteus mirabilis HI4320]
          Length = 1173

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 198/592 (33%), Positives = 306/592 (51%), Gaps = 15/592 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   +++D  Y +R 
Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLDIPDGMGLIVRTAGVGKSAEALQQDLSYRLRH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330
           WD +++ A +  AP L+++E N+I RA RD    DI EI++   K    A+  ++ +   
Sbjct: 191 WDAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMARSHIEAIGRG 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  +R Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LS+LR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  + + E R   V + +V   ++    F + +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQANVKVVIVPNDQMQTPHFSVIRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + +       +     +    ++  +P  K+     I    + + S     
Sbjct: 491 KGEEISSLSYNL-------AQYHETQLNEAEDEAVPERKAPEQPAISAFALQDNSADTTN 543

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           K++      +              S+I     + F    EP         + 
Sbjct: 544 KKKSAPTPAKQVKKSETTESGGFFSAIAKFFSNLFASQPEPVVEEKPQESKK 595



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|15618866|ref|NP_225152.1| axial filament protein [Chlamydophila pneumoniae CWL029]
 gi|16752073|ref|NP_445439.1| ribonuclease G [Chlamydophila pneumoniae AR39]
 gi|33242327|ref|NP_877268.1| cytosolic axial filament protein cafA and ribonuclease E
           [Chlamydophila pneumoniae TW-183]
 gi|4377282|gb|AAD19095.1| Axial Filament Protein [Chlamydophila pneumoniae CWL029]
 gi|7189814|gb|AAF38687.1| ribonuclease G [Chlamydophila pneumoniae AR39]
 gi|33236838|gb|AAP98925.1| cytosolic axial filament protein cafA and ribonuclease E
           [Chlamydophila pneumoniae TW-183]
          Length = 515

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 161/566 (28%), Positives = 289/566 (51%), Gaps = 65/566 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N++L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +  ++Q+AF++
Sbjct: 1   MENEILLNI-ESKEIRYAHLKNGQLFDLTIERKKVRQLKGNIYRGRVTNILRNIQSAFIN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                +GF+   +I            +   K   +   D +A+ ++ +   +    +  +
Sbjct: 60  IDERENGFIHISDI-----------LENSKKFEQMFDMDVDALPEEASEAPLLSSEEAPI 108

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE                                                   +K    +
Sbjct: 109 EE--------------------------------------------------FLKLDSPV 118

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G+KGA +T+ +S+ GRY VL+PN+     +SRKI +P  R+ LK++ R  E
Sbjct: 119 LVQVVKEPIGSKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMREQLKQLIRSFE 177

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  + +   +  +   L+  W  + E   ++  P L+Y E +++K+A+ 
Sbjct: 178 MPQDMGLICRTASTTASTEALINEAHDLLLTWKTILEKFYSTEQPCLLYSETDILKKAVI 237

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K+   +++     Y++ K  +K   P  +  +  Y D  P+F R  IE ++D   +
Sbjct: 238 TCIDKNYKRLLIDDYATYQKCKHMLKKYSPDASIKIEYYRDSIPMFERFNIEKEIDKATR 297

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 298 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 357

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 358 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 417

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL-NQKRAT 538
              +C YC G   I++  SV + I R +++ +      ++ +  H ++  Y+        
Sbjct: 418 LFTLCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHSHLCLVVHPEIASYMKQENDDNE 477

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 478 MINLAKQLKAKLQINTSDSVHLNHYQ 503


>gi|157370140|ref|YP_001478129.1| ribonuclease E [Serratia proteamaculans 568]
 gi|157321904|gb|ABV41001.1| ribonuclease, Rne/Rng family [Serratia proteamaculans 568]
          Length = 1122

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 195/635 (30%), Positives = 300/635 (47%), Gaps = 10/635 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A    AP L+++E N+I RA RD    DI EI++   K    AK+ +  L  P
Sbjct: 191 WEAIKKAAEGRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S+ALSILR +EE 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLALSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       V  YLLN+KR ++   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKS-ESLEDIQDNIVSEESTGV 627
             +      + +     +  +       + +     P   S     D             
Sbjct: 491 KGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPPPAEEPVVAQA 550

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                  ++    A      G +          ++   +  +P      +          
Sbjct: 551 TVAATATKQTAPAAAKPGLLGRLFGGLKALFAGEEQPVVEAKPVVEAPKSEGNGENRRQD 610

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                          E           +    K R
Sbjct: 611 RRGQRRQGTGRKDRGERGERGERGDRPERGERKER 645



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|307627446|gb|ADN71750.1| ribonuclease E [Escherichia coli UM146]
          Length = 1058

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 488 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 548 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 607



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|386559|gb|AAB27352.1| Ams=cell shape determining protein homolog {N-terminal}
           [Escherichia coli, Peptide, 489 aa]
          Length = 489

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 184/479 (38%), Positives = 277/479 (57%), Gaps = 8/479 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ + 
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVVRV 489



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|158425251|ref|YP_001526543.1| ribonuclease E and G [Azorhizobium caulinodans ORS 571]
 gi|158332140|dbj|BAF89625.1| ribonuclease E and G [Azorhizobium caulinodans ORS 571]
          Length = 1093

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 295/565 (52%), Positives = 373/565 (66%), Gaps = 1/565 (0%)

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
            P+ + +    E+             +D     PE  P++  R Y IQEVI+ RQ++LVQ
Sbjct: 334 KPVEDETDGESEDGEEEDEGVEQMGSDDALEEVPERAPQRRARTYKIQEVIRRRQVMLVQ 393

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITN VDRK LKE+ + LEVP 
Sbjct: 394 VVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDRKRLKEVVQELEVPE 453

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           GMG+ILRTAGA+RTK+EIKRDFEYL+RLW+ VREL L S AP+LVYEEG+LIKRAIRDLY
Sbjct: 454 GMGIILRTAGANRTKVEIKRDFEYLLRLWETVRELTLTSSAPNLVYEEGSLIKRAIRDLY 513

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            K+I EI V+GE+G++EA+DFM++LMPS+A+ V  Y +P PIF + G+E QLD++    V
Sbjct: 514 SKEIDEIHVAGEEGFQEARDFMRMLMPSHAKNVIAYREPQPIFAKYGVEHQLDAMFSPVV 573

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY++IN TEALVSIDVNSGR+TREH IEDTAL+TN+EAAEEIARQLRLRDLAGLI
Sbjct: 574 QLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNMEAAEEIARQLRLRDLAGLI 633

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDMEEK+NNRSVE+KLK+ LK DRAR+QVG IS+FGL+EMSRQRIR+ VLES+ +V
Sbjct: 634 VIDFIDMEEKRNNRSVERKLKDCLKNDRARIQVGRISHFGLMEMSRQRIRTGVLESSIEV 693

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G++RS +SVAL +LR++EE LL+  +HN+I  T  +V LY+LN KRA + E E
Sbjct: 694 CPVCGGTGHVRSAASVALQLLRALEEQLLRSASHNLIARTRGEVALYVLNHKRAHLRELE 753

Query: 544 ARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
            RF V++ V     +   + F IEKG              +               ++E 
Sbjct: 754 DRFSVTLIVQADESVTGHQPFLIEKGEIAAPPAPAPRLSSAVHPDSILPDEDYEDDEEEL 813

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                     E   + + SE      RKRRRRRRRR    +                 D+
Sbjct: 814 EESAEAEAEDESEGEAVASERGDDQPRKRRRRRRRRGGERESRADDANGSDEDGAEGDDE 873

Query: 663 SFDMYMEPSDITNHNLLENGAHGFT 687
           +     E  D       +       
Sbjct: 874 TESASGEGDDEARAEGEDRSEADSA 898



 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/90 (80%), Positives = 82/90 (91%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MANKMLIDA+H EETRVVV+R NRVEE D+ES  +KQ++GNIYLAKVTRVEPSLQAAF++
Sbjct: 1  MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL 90
          YGGNRHGFL F EIHPDYYQIP +DRQAL+
Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALI 90


>gi|325579065|ref|ZP_08149021.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392]
 gi|325159300|gb|EGC71434.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392]
          Length = 937

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 189/547 (34%), Positives = 292/547 (53%), Gaps = 14/547 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPADYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERIE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK  +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++++++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  +   E R  V I VV    +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAVHSIEKRHDVDIIVVPNEAMETPHFSVFRVREG 490

Query: 572 QALVNTGHKVGS--------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           + L    + +               S            +   +  +     I     +  
Sbjct: 491 EELNELSYNLTKFHDAQDDTFVPEESLVSRNIETAAVTSEQVMESAAVSLSIPTAAPAPV 550

Query: 624 STGVIRK 630
                  
Sbjct: 551 ERKSEEP 557



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|301155713|emb|CBW15181.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Haemophilus parainfluenzae
           T3T1]
          Length = 933

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 189/547 (34%), Positives = 293/547 (53%), Gaps = 14/547 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPADYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERIE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK  +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++++++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  +   E R  V I VV    +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAVHSIEKRHDVEIIVVPNEAMETPHFSVFRVREG 490

Query: 572 QALVNTGHKV--------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           + L    + +         +     S            +   +  +     I     +  
Sbjct: 491 EELNELSYNLAKFHEAQDDAFVPEESLVSRNIETAAVTSEQVMESAAVSLSIPTAAPAPV 550

Query: 624 STGVIRK 630
                  
Sbjct: 551 ERKPEGP 557



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|91210236|ref|YP_540222.1| ribonuclease E [Escherichia coli UTI89]
 gi|117623270|ref|YP_852183.1| ribonuclease E [Escherichia coli APEC O1]
 gi|218557966|ref|YP_002390879.1| ribonuclease E [Escherichia coli S88]
 gi|237706930|ref|ZP_04537411.1| rnase E [Escherichia sp. 3_2_53FAA]
 gi|91071810|gb|ABE06691.1| RNase E [Escherichia coli UTI89]
 gi|115512394|gb|ABJ00469.1| Rnase E [Escherichia coli APEC O1]
 gi|218364735|emb|CAR02425.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Escherichia coli S88]
 gi|226898140|gb|EEH84399.1| rnase E [Escherichia sp. 3_2_53FAA]
 gi|294493680|gb|ADE92436.1| ribonuclease E [Escherichia coli IHE3034]
 gi|315287424|gb|EFU46835.1| ribonuclease E [Escherichia coli MS 110-3]
 gi|323957908|gb|EGB53620.1| rne/Rng family protein ribonuclease [Escherichia coli H263]
          Length = 1061

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|153216572|ref|ZP_01950523.1| ribonuclease E [Vibrio cholerae 1587]
 gi|124114201|gb|EAY33021.1| ribonuclease E [Vibrio cholerae 1587]
          Length = 1052

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E+    +     R  +  A+        + V +      +      E ++  N  
Sbjct: 551 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|255745222|ref|ZP_05419171.1| ribonuclease E [Vibrio cholera CIRS 101]
 gi|262155918|ref|ZP_06029039.1| ribonuclease E [Vibrio cholerae INDRE 91/1]
 gi|255737052|gb|EET92448.1| ribonuclease E [Vibrio cholera CIRS 101]
 gi|262030229|gb|EEY48872.1| ribonuclease E [Vibrio cholerae INDRE 91/1]
          Length = 1049

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 202/664 (30%), Positives = 317/664 (47%), Gaps = 39/664 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608
           +      +        +         D  ++    +E +                 P  +
Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547

Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            + + ++Q        +                 +           D           + 
Sbjct: 548 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             +  D      +  N+   +              P     E    N  ++ P  ++   
Sbjct: 608 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 667

Query: 719 WKRR 722
             RR
Sbjct: 668 QDRR 671



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|110641260|ref|YP_668990.1| ribonuclease E [Escherichia coli 536]
 gi|300982571|ref|ZP_07176193.1| ribonuclease E [Escherichia coli MS 200-1]
 gi|110342852|gb|ABG69089.1| ribonuclease E [Escherichia coli 536]
 gi|300307152|gb|EFJ61672.1| ribonuclease E [Escherichia coli MS 200-1]
 gi|324013283|gb|EGB82502.1| ribonuclease E [Escherichia coli MS 60-1]
          Length = 1061

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|191172380|ref|ZP_03033921.1| ribonuclease E [Escherichia coli F11]
 gi|190907264|gb|EDV66862.1| ribonuclease E [Escherichia coli F11]
          Length = 1061

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|312971221|ref|ZP_07785399.1| ribonuclease E [Escherichia coli 1827-70]
 gi|310336423|gb|EFQ01609.1| ribonuclease E [Escherichia coli 1827-70]
          Length = 1058

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|323953230|gb|EGB49096.1| rne/Rng family protein ribonuclease [Escherichia coli H252]
          Length = 1061

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|323973327|gb|EGB68516.1| rne/Rng family protein ribonuclease [Escherichia coli TA007]
          Length = 1058

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 548 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 607



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|254468764|ref|ZP_05082170.1| ribonuclease E [beta proteobacterium KB13]
 gi|207087574|gb|EDZ64857.1| ribonuclease E [beta proteobacterium KB13]
          Length = 738

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 210/642 (32%), Positives = 306/642 (47%), Gaps = 13/642 (2%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +   I          +    + +                 + + E + ++   D    + 
Sbjct: 10  QSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNYGVDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +        K  K+   I +VI   Q ++VQ+ KEERGNKGAA+TT+LSLAGRY VLM
Sbjct: 70  FKEISKEFYSKKSRKKNLSIADVINEGQEVIVQVSKEERGNKGAALTTFLSLAGRYIVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+S+   ISR+I         KE+   L+V  GM VI RTAG   +  EI+ D +YL +
Sbjct: 130 PNSSESGGISRRIEGDERSNF-KEVLSQLKVKKGMSVIGRTAGIGASVEEIQWDLDYLTQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           L + ++  +    AP L+Y+E NL+ RAIRD +  DI EI++  +  Y +A  FM  +MP
Sbjct: 189 LSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIYDQASQFMNHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            YA  ++ YE+   +F +  IE Q++S    EV LPS G ++I+ TEALVSIDVNS RST
Sbjct: 249 DYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEALVSIDVNSSRST 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA  TNLEAA E+A+QLRLRD+ GLIVVDFIDME  K+ R VE+ L+++LK D
Sbjct: 309 KGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQREVEECLRDALKHD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           +AR+Q G IS FGL+E+SRQR+R S+ E++   C  C G G IR   S AL I+R ++E 
Sbjct: 369 KARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQSSALHIIRMIQEQ 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +     I V    DV  +LLN+KR  I++ E+     I ++         F I     
Sbjct: 429 SNKKQGQKISVQVPVDVATFLLNEKREIIIQTESEGNNKIFIIANKYFDVPQFKITSSDL 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV---------S 621
                 +  +V         D   E   +    +     E       N           +
Sbjct: 489 GNKKGLSYQEVDVPDVENLDDNEQETKVKQIPAVKGVIPEKRSRKSKNKSLFGFIKGLIA 548

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
            +             R   ++ H +    +      N    +       S+  N   +  
Sbjct: 549 SDDDATEDFSEAASDRNNESSQHLEESEGNKKPYRNNRRRRNNRSRNYRSNQQNQENVNK 608

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                     V +   S   ++S N S D   K  R   R+K
Sbjct: 609 KPEMVMVETPVDVEKNSDKNLDSVNKSKD---KPKRNQPRKK 647



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 57/77 (74%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +ML +A+  EE RV ++ D+ +E+LD+E   ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRMLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLPF EI  ++Y
Sbjct: 62 VDRHGFLPFKEISKEFY 78


>gi|297579534|ref|ZP_06941462.1| ribonuclease E [Vibrio cholerae RC385]
 gi|297537128|gb|EFH75961.1| ribonuclease E [Vibrio cholerae RC385]
          Length = 1052

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E+    +     R  +  A+        + V +      +      E ++  N  
Sbjct: 551 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|114562666|ref|YP_750179.1| ribonuclease, Rne/Rng family protein [Shewanella frigidimarina
           NCIMB 400]
 gi|114333959|gb|ABI71341.1| RNAse E [Shewanella frigidimarina NCIMB 400]
          Length = 1124

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 208/651 (31%), Positives = 321/651 (49%), Gaps = 33/651 (5%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQELYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
               G         F+ +  I+EV++  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIGREYFPKGYSFQGRPNIKEVLQEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVP GMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMAELEVPNGMGLIVRTAGVGKESTELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             WD ++E A +  AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 189 HHWDAIQEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKLHIGLVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERVKLYDSEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRSTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + ++    +    + + +  
Sbjct: 429 EAIKENTTQIEAIVPVDVAAFLLNEKRKAIRITEERHQVEVYIIPDAHMQTPDYRVVRRK 488

Query: 570 PVQALVNTGHK---------------VGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
               +  + +K                 + S  P+           E  +          
Sbjct: 489 SDDEVSESSYKRVEQPVAKLYEPRKLERAASPEPALKGFAAPQKAAEDTVKATPVNVAPV 548

Query: 615 IQDNIVSEEST------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
              N  S  +                 K  +     + +T  +         +  +  + 
Sbjct: 549 ATSNQPSLFTRMISAISALFSGSEAEVKETKAAVSTKESTQTNTRRNTRRNDTRNDSANR 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           +           + +  ++G    ++N        +T + +++ +      
Sbjct: 609 NDKRNDSRRQRNDSDKSKDGTEARSQNKRNERNSRNTVQDDNAKNKPKTEK 659



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++    + +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQELYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 62 ADRHGFLPLKEIGREYF 78



 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 13/157 (8%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
               T           +    +         +     ES    +D     E+ G   +RR
Sbjct: 799 ETDATAVVEVKAETTQADVDTVTETVVASTDVAAETDESSSSAEDATTDSEAEGREGQRR 858

Query: 633 RR-----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM--YMEPSDITNHNLL 679
            R           RRRR   T      V +    ++  +D          P        +
Sbjct: 859 SRRSPRHLRAAGQRRRRDDETGSTQPAVFTPNDELEKQLDAEQARTQAQAPVTEAIVESV 918

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              A   +   + +  PV   + E + +++ P+  + 
Sbjct: 919 TKPAETVSTAAETATKPVEVLKAEVNKANAAPVNVEK 955


>gi|327484564|gb|AEA78971.1| Ribonuclease E [Vibrio cholerae LMA3894-4]
          Length = 1052

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E+    +     R  +  A+        + V +      +      E ++  N  
Sbjct: 548 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 607

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 608 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 645



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|254497896|ref|ZP_05110661.1| ribonuclease E [Legionella drancourtii LLAP12]
 gi|254352894|gb|EET11664.1| ribonuclease E [Legionella drancourtii LLAP12]
          Length = 677

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 204/667 (30%), Positives = 321/667 (48%), Gaps = 33/667 (4%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           + +L  +  A+    A+  +    D+ I     +++   I   +    E S+ +   +  
Sbjct: 2   EKMLINAMQAEEVRVALIKNNHLFDLDIECPGEVKKKGNIYKATVTRREPSLDAVFVEYG 61

Query: 147 SN-------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
           S         E        +       +  I  +I+  Q LL+Q+ KEERGNKGAA+TT+
Sbjct: 62  SKRQGFLPLKEIAPEYLSRNPDDFGDEKPPITTLIREGQELLIQVDKEERGNKGAALTTF 121

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           ++LAG Y VLMPN  +   ISR+I      + L+E    L +P  MG+I+RTAG  +++ 
Sbjct: 122 ITLAGCYLVLMPNNPRSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSQE 180

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E++ D   L   W ++++     +AP L+++EGN+I R+IRD   K ISEII+  +  Y 
Sbjct: 181 ELQDDLNMLCNQWQSIKQAYNTELAPCLIHQEGNVIIRSIRDNLRKSISEIIIDDQISYI 240

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           EA+ ++  + P +   ++ Y    P+F   GIE Q+++ +Q +V LPS G ++I++TEAL
Sbjct: 241 EARKYVGRVKPEFLPNLKLYNSSVPLFNFYGIESQIETAYQRQVMLPSGGALVIDRTEAL 300

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           VSIDVNS ++T    IE TA  TN+EAA+EIARQLRLRDL GL+V+DFIDM   KN R V
Sbjct: 301 VSIDVNSAKATGGSDIEATAFNTNIEAADEIARQLRLRDLGGLVVIDFIDMGSSKNQRDV 360

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           E +LKE+L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+  +VC  C+G G +R+  S 
Sbjct: 361 ENRLKEALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEVCPRCEGRGTVRNIQSH 420

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
            LSI R +EE  L+     I V    ++  +++N+KR  I + E R  VS+ ++    L 
Sbjct: 421 GLSITRLIEEEALKDKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHSVSVMIIANPYLH 480

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAP------SYDKNIECVWQDEALLPIPKSESLE 613
              + I +                  Q        + +         +       +++L+
Sbjct: 481 SPQYTITRLKEDNVGKTKKPSYTLIQQPELQVTANAQEALSRDEPAVKPFTGHQPAKNLQ 540

Query: 614 ----------------DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
                           D++     + +     + + + +  R        G  +   +  
Sbjct: 541 TGFIKRLWSSLFGGHTDVEAVSPPQHTKKTPARNQNQGKSSRGTGTGTSTGTGTGTGTGS 600

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP---PVSTPEMESSNSSSDPIVK 714
           N      +    PS           A+  T       P     S P  +    S     +
Sbjct: 601 NERRSQNNRRRRPSGNQQQRANNPSANAATTANTNPNPQHRRRSNPNQQQQGGSRPASAR 660

Query: 715 KTRWWKR 721
                KR
Sbjct: 661 GEGNKKR 667



 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   MLI+A   EE RV ++++N + +LD E   + + KGNIY A VTR EPSL A FV+
Sbjct: 1  MEK-MLINAMQAEEVRVALIKNNHLFDLDIECPGEVKKKGNIYKATVTRREPSLDAVFVE 59

Query: 61 YGGNRHGFLPFLEIHPDY 78
          YG  R GFLP  EI P+Y
Sbjct: 60 YGSKRQGFLPLKEIAPEY 77


>gi|229528952|ref|ZP_04418342.1| ribonuclease E [Vibrio cholerae 12129(1)]
 gi|229332726|gb|EEN98212.1| ribonuclease E [Vibrio cholerae 12129(1)]
          Length = 1052

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E+    +     R  +  A+        + V +      +      E ++  N  
Sbjct: 551 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|157160611|ref|YP_001457929.1| ribonuclease E [Escherichia coli HS]
 gi|157066291|gb|ABV05546.1| ribonuclease E [Escherichia coli HS]
          Length = 1061

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|15642032|ref|NP_231664.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591522|ref|ZP_01678786.1| ribonuclease E [Vibrio cholerae 2740-80]
 gi|121729886|ref|ZP_01682313.1| ribonuclease E [Vibrio cholerae V52]
 gi|153823923|ref|ZP_01976590.1| ribonuclease E [Vibrio cholerae B33]
 gi|227082157|ref|YP_002810708.1| ribonuclease E [Vibrio cholerae M66-2]
 gi|229507881|ref|ZP_04397386.1| ribonuclease E [Vibrio cholerae BX 330286]
 gi|229511884|ref|ZP_04401363.1| ribonuclease E [Vibrio cholerae B33]
 gi|229519020|ref|ZP_04408463.1| ribonuclease E [Vibrio cholerae RC9]
 gi|229607426|ref|YP_002878074.1| ribonuclease E [Vibrio cholerae MJ-1236]
 gi|254849117|ref|ZP_05238467.1| ribonuclease E [Vibrio cholerae MO10]
 gi|298497941|ref|ZP_07007748.1| ribonuclease E [Vibrio cholerae MAK 757]
 gi|9656575|gb|AAF95178.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546621|gb|EAX56812.1| ribonuclease E [Vibrio cholerae 2740-80]
 gi|121628376|gb|EAX60877.1| ribonuclease E [Vibrio cholerae V52]
 gi|126518555|gb|EAZ75778.1| ribonuclease E [Vibrio cholerae B33]
 gi|227010045|gb|ACP06257.1| ribonuclease E [Vibrio cholerae M66-2]
 gi|229343709|gb|EEO08684.1| ribonuclease E [Vibrio cholerae RC9]
 gi|229351849|gb|EEO16790.1| ribonuclease E [Vibrio cholerae B33]
 gi|229355386|gb|EEO20307.1| ribonuclease E [Vibrio cholerae BX 330286]
 gi|229370081|gb|ACQ60504.1| ribonuclease E [Vibrio cholerae MJ-1236]
 gi|254844822|gb|EET23236.1| ribonuclease E [Vibrio cholerae MO10]
 gi|297542274|gb|EFH78324.1| ribonuclease E [Vibrio cholerae MAK 757]
          Length = 1052

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 202/664 (30%), Positives = 317/664 (47%), Gaps = 39/664 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608
           +      +        +         D  ++    +E +                 P  +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            + + ++Q        +                 +           D           + 
Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             +  D      +  N+   +              P     E    N  ++ P  ++   
Sbjct: 611 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 670

Query: 719 WKRR 722
             RR
Sbjct: 671 QDRR 674



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254785799|ref|YP_003073228.1| ribonuclease E [Teredinibacter turnerae T7901]
 gi|237684129|gb|ACR11393.1| ribonuclease E [Teredinibacter turnerae T7901]
          Length = 1070

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 215/624 (34%), Positives = 321/624 (51%), Gaps = 31/624 (4%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+    +   D E    +    ++       +E     A    +      +  
Sbjct: 11  PEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEYDKGRNGFLP- 69

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                  ++++        P +   +  I++V+K    ++VQ+ KEERGNKGAA+TT++S
Sbjct: 70  -------LKEISREYFLKQPNEIDGRIRIKDVVKEGMEVIVQVDKEERGNKGAALTTFIS 122

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +   ISR+I      + LK+    +E+P GMG+I+RTAG  R+  E+
Sbjct: 123 LAGRYLVLMPNNPRAGGISRRIDGDDRSE-LKDALSQIEIPNGMGIIVRTAGVGRSAEEL 181

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  YL  LW+N++E A  S AP  +++E N+I RAIRD    DI E+IV     Y +A
Sbjct: 182 QWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAYNQA 241

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            DF++++MP+Y   V+ YE   P+F    IE Q+++  + EV LPS G ++I+ TEALVS
Sbjct: 242 ADFVQMVMPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEALVS 301

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NS R+T+   IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM+  +N R+VE 
Sbjct: 302 IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRAVEN 361

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +++++LK DRARVQVG IS FGLLEMSRQR+R S+ E+T+KVC  C G G IR   S+AL
Sbjct: 362 RVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSIAL 421

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           SILR VEE   +  +  I       V  YLLN+KR +I + E R    + V+   E+   
Sbjct: 422 SILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIENRHQTRVTVLPNTEMVTP 481

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC---------VWQDEALLPIPKSESL 612
            + + +           + +  + Q    D +            V Q     P P+    
Sbjct: 482 HYEVTRLRDDDDTSEISYTIELNHQEDQDDSSAPTAPVAMPKPVVQQLAPSQPAPEPVKQ 541

Query: 613 EDIQDNIVSE-------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
              +                         +   +  +R      + + G  ++ +     
Sbjct: 542 APAKTAEGPSLIARIIDALKSLFAPEEEAKPATKGNQRSHQKKRNANTGNRNNRNRKPRD 601

Query: 660 IDDSFDMYMEPSDITNHNLLENGA 683
            D   D   +          ++G 
Sbjct: 602 RDRDGDETSDNRKQQRDARSDSGK 625



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + +LD E+  K+Q K NIY  K+TR+EPSL+AAFV+Y 
Sbjct: 2   KRMLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEYD 61

Query: 63  GNRHGFLPFLEIHPDYY--QIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             R+GFLP  EI  +Y+  Q    D +  +K+      +     D    G+
Sbjct: 62  KGRNGFLPLKEISREYFLKQPNEIDGRIRIKDVVKEGMEVIVQVDKEERGN 112


>gi|325497608|gb|EGC95467.1| ribonuclease E [Escherichia fergusonii ECD227]
          Length = 1056

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 200/662 (30%), Positives = 316/662 (47%), Gaps = 48/662 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ------------ 616
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEESPERKRPEQPALATFAMPDVPPVPPAPAEPAVK 547

Query: 617 ---------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                                       +I S        ++   +   +P         
Sbjct: 548 AAPAPKAAEPAATPAQPGLLSRFFAALKSIFSGSDDAKPAEQPAPKAAEKPERQQDRRKP 607

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
             +    +N   D+     E SD    N          E+ D         + + ++   
Sbjct: 608 RQNTRRDRNERRDTRSERTENSDNREENRRNRRQAQGAESRDNRQQVNDIEKTKPTDEQQ 667

Query: 710 DP 711
            P
Sbjct: 668 TP 669



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|213865432|ref|ZP_03387551.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 975

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 181/542 (33%), Positives = 283/542 (52%), Gaps = 7/542 (1%)

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
           +++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMPN  +   ISR+I      + L
Sbjct: 1   MLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTE-L 59

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           KE    LE+P GMG+I+RTAG  ++   ++ D  + ++ W+ +++ A +  AP L+++E 
Sbjct: 60  KEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQES 119

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHPIFFRSGI 351
           N+I RA RD   +DI EI++   K    A+  +  L  P ++  ++ Y    P+F    I
Sbjct: 120 NVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRPDFSSKIKLYTGEIPLFSHYQI 179

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+TR   IE+TA  TNLEAA+EIA
Sbjct: 180 ESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIA 239

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++DRAR+Q+  IS FGLLEMSRQR
Sbjct: 240 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 299

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
           +  S+ ES+  VC  C G G +R   S++LSILR +EE  L+     +       +  YL
Sbjct: 300 LSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYL 359

Query: 532 LNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS-DSQAPS 589
           LN+KR  +   E R  GV   +V   ++    + + +    +      + +     +A +
Sbjct: 360 LNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVRKGEETPTLSYMLPKLHEEAMA 419

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                E   +     P   + ++ D+       E    +      ++    A      G+
Sbjct: 420 LPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV---ATAKKDNVAAEQPAQPGL 476

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
            S   +    +    +     +                +    +    +       N + 
Sbjct: 477 FSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRDNRAR 536

Query: 710 DP 711
             
Sbjct: 537 RD 538


>gi|145628780|ref|ZP_01784580.1| ribonuclease E [Haemophilus influenzae 22.1-21]
 gi|144979250|gb|EDJ88936.1| ribonuclease E [Haemophilus influenzae 22.1-21]
          Length = 935

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K + +AK+ +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +++++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G +R   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I V     +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490

Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621
           + +    + +          + +  +    +  A++  P  ES        E     +  
Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550

Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           + +                       + +  R  R    +         S      ++  
Sbjct: 551 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +   E                  E         STP  E+    ++P+ +
Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|218694618|ref|YP_002402285.1| ribonuclease E [Escherichia coli 55989]
 gi|307310138|ref|ZP_07589788.1| ribonuclease, Rne/Rng family [Escherichia coli W]
 gi|218351350|emb|CAU97056.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Escherichia coli 55989]
 gi|306909856|gb|EFN40350.1| ribonuclease, Rne/Rng family [Escherichia coli W]
 gi|315060362|gb|ADT74689.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli W]
 gi|323379077|gb|ADX51345.1| ribonuclease, Rne/Rng family [Escherichia coli KO11]
          Length = 1061

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 551 VAPSPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               S     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNSRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQTEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|269102255|ref|ZP_06154952.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162153|gb|EEZ40649.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1095

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 205/629 (32%), Positives = 324/629 (51%), Gaps = 10/629 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAKEYFPQDYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGEERTQ-LKAALSTLELPHGMGLIVRTAGVGKSAEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  V+E A    AP L+++E N+I RAIRD   +DI EI++   K +  A+D +KL+ P 
Sbjct: 188 WSAVKEAADAQPAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFERARDHIKLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FISRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  VC  C G G +R   S++LSILR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+  +  ++      +  YLLN+KR ++   E    V + +V   ++    F + +    
Sbjct: 428 LKDNSSQVLAIVPVAIASYLLNEKRRSVQHIEKYHDVRVIIVPNSDMETPHFEVSRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE----SLEDIQDNIVSEESTGV 627
           +      +++     A    +  E V  +  +    +      +       I    ++ +
Sbjct: 488 EEQEALSYRIPKLLAAQREAETQEPVQPERVIKKREEPVLQGFTAPKEPAPIAKPAASKL 547

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             ++     R   A  +  +  +S     Q   +++ +          ++   N      
Sbjct: 548 AVQQPSIFNRIFSAIANFFSSHMSKKEEEQQPQENTNNRRNNNRRNDRNDNRRNDNRRND 607

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              + +       + E  ++ ++   +K 
Sbjct: 608 NRRNDNRRNNRQQDSEQRDNRNNERQEKD 636



 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 6/109 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   ++ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y      YQ   + ++ L +   +     +    + 
Sbjct: 61  RHGFLPLKEIAKEYFPQDYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 109


>gi|260361709|ref|ZP_05774736.1| ribonuclease E [Vibrio parahaemolyticus K5030]
 gi|308111281|gb|EFO48821.1| ribonuclease E [Vibrio parahaemolyticus K5030]
          Length = 657

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 193/518 (37%), Positives = 289/518 (55%), Gaps = 6/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 191 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           +      + +    +A    +  E    D     I + 
Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEP 528



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109


>gi|315296715|gb|EFU56010.1| ribonuclease E [Escherichia coli MS 16-3]
          Length = 1061

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPADPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|170683427|ref|YP_001744094.1| ribonuclease E [Escherichia coli SMS-3-5]
 gi|170521145|gb|ACB19323.1| ribonuclease E [Escherichia coli SMS-3-5]
          Length = 1057

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S   S    +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFSALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|301029701|ref|ZP_07192755.1| ribonuclease E [Escherichia coli MS 196-1]
 gi|299877389|gb|EFI85600.1| ribonuclease E [Escherichia coli MS 196-1]
          Length = 1058

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|194438115|ref|ZP_03070208.1| ribonuclease E [Escherichia coli 101-1]
 gi|253773892|ref|YP_003036723.1| ribonuclease E [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161190|ref|YP_003044298.1| ribonuclease E [Escherichia coli B str. REL606]
 gi|300928364|ref|ZP_07143898.1| ribonuclease E [Escherichia coli MS 187-1]
 gi|194423051|gb|EDX39045.1| ribonuclease E [Escherichia coli 101-1]
 gi|242376887|emb|CAQ31605.1| RNase E, subunit of ribonuclease E and degradosome [Escherichia
           coli BL21(DE3)]
 gi|253324936|gb|ACT29538.1| ribonuclease, Rne/Rng family [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973091|gb|ACT38762.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli B str.
           REL606]
 gi|253977305|gb|ACT42975.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli BL21(DE3)]
 gi|300463622|gb|EFK27115.1| ribonuclease E [Escherichia coli MS 187-1]
          Length = 1061

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|218531875|ref|YP_002422691.1| ribonuclease, Rne/Rng family [Methylobacterium chloromethanicum
           CM4]
 gi|218524178|gb|ACK84763.1| ribonuclease, Rne/Rng family [Methylobacterium chloromethanicum
           CM4]
          Length = 1046

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 287/550 (52%), Positives = 370/550 (67%), Gaps = 7/550 (1%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 348 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 407

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKE+   L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL 
Sbjct: 408 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 467

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE  YREAKDFM++LMP  +++V+ Y
Sbjct: 468 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 527

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            DP PIF R G+E QLD++  T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 528 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 587

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE---KKNNRSVEKKLKESLKKDRARVQV 456
           L+TNLEAAEE+ARQ+RLRDLAGL+V+DFID      K+NNR+VEK+L E+LK DRAR+QV
Sbjct: 588 LKTNLEAAEEVARQVRLRDLAGLVVIDFID---MEEKRNNRAVEKRLNEALKNDRARIQV 644

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
           G IS FGLLEMSRQRIR+ VLES++  C +C G+G++R+ SSVAL ILRS+EE LL+  +
Sbjct: 645 GRISPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSAS 704

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALV 575
           HN+++ T ++  LY+LNQKRA + + E RF V+I +     L A   F +E+G P     
Sbjct: 705 HNVVLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHE 764

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                V + + +P Y+         E+         +E   +    E       +    R
Sbjct: 765 GPVTGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGR 824

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           RRRR       A    +  +      DS D   + ++  +                 + P
Sbjct: 825 RRRRRRRRGGRASGEGEARARDEDGTDSEDGAEDGTEDGDDAPDSEPEAAEAALGAAAEP 884

Query: 696 PVSTPEMESS 705
             +  + +++
Sbjct: 885 DETASDADAN 894



 Score =  177 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 89/142 (62%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y
Sbjct: 3   NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F EIHPDYYQIP +DR AL++     + +     +             +  
Sbjct: 63  GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122

Query: 122 EVAPIANFSQETEEESIISANN 143
             +   +  +  E  S   + +
Sbjct: 123 RGSRPDDTVKSQEAVSDAGSED 144


>gi|324113879|gb|EGC07853.1| rne/Rng family protein ribonuclease [Escherichia fergusonii B253]
          Length = 1059

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 200/662 (30%), Positives = 316/662 (47%), Gaps = 48/662 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ------------ 616
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEESPERKRPEQPALATFAMPDVPPVPPAPAEPAVK 550

Query: 617 ---------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                                       +I S        ++   +   +P         
Sbjct: 551 AAPAPKAAEPAATPAQPGLLSRFFAALKSIFSGSDDAKPAEQPAPKAAEKPERQQDRRKP 610

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
             +    +N   D+     E SD    N          E+ D         + + ++   
Sbjct: 611 RQNTRRDRNERRDTRSERTENSDNREENRRNRRQAQGAESRDNRQQVNDIEKTKPTDEQQ 670

Query: 710 DP 711
            P
Sbjct: 671 TP 672



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|332342630|gb|AEE55964.1| ribonuclease E (RNase E) [Escherichia coli UMNK88]
          Length = 1061

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|309701356|emb|CBJ00657.1| ribonuclease E [Escherichia coli ETEC H10407]
          Length = 1061

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|77460387|ref|YP_349894.1| RNAse E [Pseudomonas fluorescens Pf0-1]
 gi|77384390|gb|ABA75903.1| putative ribonuclease E [Pseudomonas fluorescens Pf0-1]
          Length = 1082

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 224/645 (34%), Positives = 325/645 (50%), Gaps = 19/645 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 191 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
              T       + A +  ++++       L+    +      + N               
Sbjct: 491 EAATNQSSYEIAAAAADVEDVQPAAATRTLVRQEAAVKTAPARANAPVPTEVAAPAPAPA 550

Query: 634 RRRRRRP--------------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 P              AT       V            + +         N N  
Sbjct: 551 PVAAPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERRNGRQQSRNRNGR 610

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723
            +      E              E         V++ R   + R+
Sbjct: 611 RDEERKPREERAPREERAPREPREERQPREPREVREPREVREPRE 655



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 62  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 106


>gi|251793108|ref|YP_003007834.1| ribonuclease E [Aggregatibacter aphrophilus NJ8700]
 gi|247534501|gb|ACS97747.1| ribonuclease E (RNase E) [Aggregatibacter aphrophilus NJ8700]
          Length = 959

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 205/665 (30%), Positives = 333/665 (50%), Gaps = 39/665 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+++I   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPADYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K Y +AK  +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE ++++++++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I VV    +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHNVDIVVVPNEAMETPHFSVFRVRDG 490

Query: 572 QALVNTGHK---------VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           + +    +              ++     +NI+    +   +          +      E
Sbjct: 491 EEVNELSYNLVHLHQDQDETFVAEESLVSRNIDSAEAETPAVESAAVSLAITMPAPEPVE 550

Query: 623 --------------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                                ++   ++ + ++ R      ++      +  + +   +D
Sbjct: 551 HKGKSAPSLLSRLLSVLKGLFASEPKQEEQAKKARNNNRNSNNRNRRNQERRNSRRQRND 610

Query: 663 SFD----MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
           + D       E S+  N N   N  H         +   +  E  ++ + S+ + ++ + 
Sbjct: 611 NADVQVMERTEKSEAQNRNQERNARHNRKAEVIEEVINQNVIESATNETKSEQVTQRRQR 670

Query: 719 WKRRK 723
              RK
Sbjct: 671 RDLRK 675



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|320325302|gb|EFW81369.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. B076]
          Length = 1083

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 225/645 (34%), Positives = 330/645 (51%), Gaps = 19/645 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
             +        + A +  + I  +      L   ++                 V      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 634 RRRRRRPA---------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                 P+                +   A VV +  + +     + +           N 
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +      E              E+   S+    +  R  + RK
Sbjct: 608 RRDEERKPREERAPREERTVREPREAREDSAPREERPARTSRERK 652



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|119478177|ref|ZP_01618233.1| ribonuclease E [marine gamma proteobacterium HTCC2143]
 gi|119448686|gb|EAW29930.1| ribonuclease E [marine gamma proteobacterium HTCC2143]
          Length = 956

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 199/589 (33%), Positives = 312/589 (52%), Gaps = 23/589 (3%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++        P   + ++ I++V+K    ++VQ+ KEERGNKGAA+TT++SLAGRY VL
Sbjct: 84  KEISRDYFYRQPSDVQGRFKIRDVVKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVL 143

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR I        LK+    + +P GMG I+RTA   R+  E++ D +Y  
Sbjct: 144 MPNNPRAGGISRSIEGEERSD-LKDALNNMAIPKGMGAIVRTAAVGRSAEELQWDLDYQA 202

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           ++WD +++ A +  AP L+ ++ N+I RAIRD   +DI ++++  E+ Y +A +F+  +M
Sbjct: 203 QIWDAIKKAAEDQPAPLLLLQDSNVIIRAIRDYLREDIDQVLIDAEEAYTDAMNFVTRIM 262

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P Y   +R Y+DP P+F R  IE Q+++  Q +V LPS G ++I+ TEALVSID+NS R+
Sbjct: 263 PHYESRIRLYQDPVPLFNRYQIESQIETAFQRDVDLPSGGSIVIDPTEALVSIDINSARA 322

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRD+ GLIV+DFIDM   KN R+VE +++++L  
Sbjct: 323 TKGGNIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMSAAKNQRAVENRMRDALNI 382

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E++ KVC  C G G IR   S++LSILR VEE
Sbjct: 383 DRARVQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCTGQGTIRDTKSLSLSILRLVEE 442

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +  +  I      +V  YLLN+KR  I + E R GV + +    +L    F +++  
Sbjct: 443 SASKERSAEIRALVPVNVASYLLNEKRQPIHDIELRTGVRVVIAPIPQLETPHFELQRLR 502

Query: 570 PVQ-------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
             +              + +          A      ++ +             ++    
Sbjct: 503 DDEIGKDVEISYKMQTEIADETSIQVQQKAAAPQQAAVQSIAPPAPAPLAAAKANIAPDT 562

Query: 617 DNIVSE--------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
                          + G     ++  +++    +  +    +      N  + + +   
Sbjct: 563 ATKSPGLLSKIIGFFTGGDKDDEKKDEQKKPEKRESTNRRPQNRGGQQNNNRNRNRNRNK 622

Query: 669 EPSDITNH-NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             ++  N  N    G    T++ + +  P      +       P   ++
Sbjct: 623 SRNESRNESNDRNEGNDRGTKDGNRNAAPQQKKTHDKVEPREAPAANES 671



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/108 (40%), Positives = 65/108 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD E+  + Q+K NIY   +TRVEPSL+AAF+D+G
Sbjct: 15  KRMLINATQPEELRVGLVDGQRLYDLDIENRTRVQMKDNIYKGTITRVEPSLEAAFIDFG 74

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
            +RHGFLP  EI  DY+    SD Q   K  ++ +  +E +       
Sbjct: 75  ADRHGFLPLKEISRDYFYRQPSDVQGRFKIRDVVKEGTEVIVQVDKEE 122


>gi|188494840|ref|ZP_03002110.1| ribonuclease E [Escherichia coli 53638]
 gi|188490039|gb|EDU65142.1| ribonuclease E [Escherichia coli 53638]
          Length = 1061

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|218689037|ref|YP_002397249.1| ribonuclease E [Escherichia coli ED1a]
 gi|218426601|emb|CAR07429.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Escherichia coli ED1a]
          Length = 1061

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|261868549|ref|YP_003256471.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413881|gb|ACX83252.1| ribonuclease E (RNase E) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 960

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 199/635 (31%), Positives = 316/635 (49%), Gaps = 17/635 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+++I   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 69  EIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   + Y +AK  +KL+ P 
Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE ++++++++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  
Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I VV    +    F + +    
Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMETPHFSVFRVRDG 487

Query: 572 QALVNTGHKVGS---------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           + +    + +            ++     +NI+    +  ++          +      E
Sbjct: 488 EEVNELSYNLARLHQGQDEIFVAEESLISRNIDTTPAETPVVESAAVSLSIPMPAPEPVE 547

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                      R           +     +  + +   ++                    
Sbjct: 548 RKEQSGPSLLSRLLAALKGLFASEPK--QEEQNKKTRNNNRNSNNNRNRRNQERRNSRRN 605

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +   EN            +ES N + +   K+ R
Sbjct: 606 RNDNAENVVEEQTAEKAERVESRNRNQERNAKRNR 640



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|309788154|ref|ZP_07682760.1| ribonuclease E [Shigella dysenteriae 1617]
 gi|308924006|gb|EFP69507.1| ribonuclease E [Shigella dysenteriae 1617]
          Length = 1058

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFTERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +  S +              +         
Sbjct: 548 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSSGEETKPSEQAAPKVEAKPERQQDRRK 607



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|215486295|ref|YP_002328726.1| ribonuclease E [Escherichia coli O127:H6 str. E2348/69]
 gi|312968840|ref|ZP_07783047.1| ribonuclease E [Escherichia coli 2362-75]
 gi|215264367|emb|CAS08724.1| fused ribonuclease E: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286242|gb|EFR14155.1| ribonuclease E [Escherichia coli 2362-75]
          Length = 1061

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|153830605|ref|ZP_01983272.1| ribonuclease E [Vibrio cholerae 623-39]
 gi|148873903|gb|EDL72038.1| ribonuclease E [Vibrio cholerae 623-39]
          Length = 1052

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 205/641 (31%), Positives = 321/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     +     R  +  A+        + V +      +      E +D  N  
Sbjct: 551 PQPVAEVQKPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|323967025|gb|EGB62451.1| rne/Rng family protein ribonuclease [Escherichia coli M863]
 gi|327253483|gb|EGE65121.1| ribonuclease E [Escherichia coli STEC_7v]
          Length = 1061

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 192/624 (30%), Positives = 302/624 (48%), Gaps = 11/624 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM---EPSDITNHNLLENGAHGF 686
                +            G++S        +    +      +P+  T            
Sbjct: 551 AAPAPKAASTTPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKTETKPERQQDRRK 610

Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710
               +              N  SD
Sbjct: 611 PRQNNRRDRNERRDTRSERNEGSD 634



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|221068710|ref|ZP_03544815.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1]
 gi|220713733|gb|EED69101.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1]
          Length = 996

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 189/538 (35%), Positives = 292/538 (54%), Gaps = 6/538 (1%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  I +VI+  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A  S    L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP
Sbjct: 189 LWSAIDGAAKASKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR++ ++ E     C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     +      +V  +LLN+KR+ I + E +  V++ +V    +    + +E+   
Sbjct: 429 SMKDNTAAVHCQVPVEVASFLLNEKRSEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSY-----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             + + +       +  P        ++ E   +   ++     ++   I +     +
Sbjct: 489 DDSRLESMEASYKLADEPEEVTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPPRQ 546



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGN 110


>gi|323190598|gb|EFZ75870.1| ribonuclease E [Escherichia coli RN587/1]
          Length = 1054

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 548 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 607



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|323976543|gb|EGB71631.1| rne/Rng family protein ribonuclease [Escherichia coli TW10509]
          Length = 1061

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 192/624 (30%), Positives = 302/624 (48%), Gaps = 11/624 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM---EPSDITNHNLLENGAHGF 686
                +            G++S        +    +      +P+  T            
Sbjct: 551 AAPAPKAASTTPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKTETKPERQQDRRK 610

Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710
               +              N  SD
Sbjct: 611 PRQNNRRDRNERRDTRSERNEGSD 634



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|324007924|gb|EGB77143.1| ribonuclease E [Escherichia coli MS 57-2]
          Length = 1061

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|56460457|ref|YP_155738.1| RNase E [Idiomarina loihiensis L2TR]
 gi|56179467|gb|AAV82189.1| RNase E [Idiomarina loihiensis L2TR]
          Length = 980

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 206/627 (32%), Positives = 308/627 (49%), Gaps = 21/627 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +       F+ +  I++V+K  Q ++VQI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAKTYFPQGYTFQGRPNIKDVVKEGQEVIVQIDKEERGQKGAALTTFVSLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LKE    L VP  MG+I+RTAG  ++K E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERS-ALKEALSDLNVPKEMGLIVRTAGVGKSKEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ + + A    AP L+++E N+I RA+RD   +DI E+++   K Y + +  ++L+ P 
Sbjct: 188 WEAISKAADERPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSPKVYEQVRSHIQLIRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           + + V+QYE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FLQRVKQYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAAEEIARQLRLRD+ GL+V+DFIDM   ++ R VE +L++SL +DR
Sbjct: 308 GGDIEETALQTNLEAAEEIARQLRLRDVGGLVVIDFIDMTPARHQRDVENRLRDSLSQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+QV  IS FGL+EMSRQR+R S+ ES   VC  C G G IRS  S+ALSILR +EE  
Sbjct: 368 ARIQVARISRFGLMEMSRQRLRPSLGESANNVCPRCNGQGTIRSSDSLALSILRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +      DV  YLLN+KR ++   E R  V I ++    +    F + +    
Sbjct: 428 IKDNTIQVHAQVPVDVATYLLNEKRQSVNHIEKRHNVKIVIIPNHHMETPHFEVLRIRDD 487

Query: 572 QALVNTG-----HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +   +           ++S         +  +++ AL  +    +          EE   
Sbjct: 488 EVPESASFELVQKPEQTESTVSITLTQDKAKFEEPALKGLQAPSAAPTPAPAPKVEEKKA 547

Query: 627 VIRKRRRR----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                  R              +   +       +  +                     +
Sbjct: 548 AQPSLLSRLATWFSGLFGSDEAQKQAEAEKEKERNAQNQRNQQRRGRNRRSGNRQQRGRN 607

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEME 703
                      EN   +    ST   +
Sbjct: 608 QSAGKDKEASKENTSAATEDKSTESRD 634



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+ +EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI   Y+
Sbjct: 61 RHGFLPLKEIAKTYF 75


>gi|332758245|gb|EGJ88568.1| ribonuclease E [Shigella flexneri 4343-70]
          Length = 1058

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 547

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 548 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 607

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 608 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667

Query: 707 SSSDP 711
               P
Sbjct: 668 EQQAP 672



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|300112961|ref|YP_003759536.1| Rne/Rng family ribonuclease [Nitrosococcus watsonii C-113]
 gi|299538898|gb|ADJ27215.1| ribonuclease, Rne/Rng family [Nitrosococcus watsonii C-113]
          Length = 764

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 217/653 (33%), Positives = 325/653 (49%), Gaps = 34/653 (5%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149
           A+    A+ D     D+ I N    ++ A I        E S+ +   D  ++      +
Sbjct: 11  AEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFIDYGADRQGFLPL 70

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ++V     +   ++   +  +QEV+K  Q L+VQ+ KEERGNKGAA++T++SLAGRY VL
Sbjct: 71  KEVTRSYFQSHQREPGDRPKVQEVLKEGQELVVQVEKEERGNKGAALSTFISLAGRYLVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   +SR+I        L E  R LE+P GMG+I RTA   +   E++ D  YL+
Sbjct: 131 MPNNPRAGGVSRRIEGEERS-MLLEAMRTLEIPEGMGLITRTAAVGKNAEELQWDLNYLL 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            LW +++  A    AP L+Y+E ++I RA+RD    DI EI++     Y+ A DFM+ +M
Sbjct: 190 HLWRSIQAAAEGQPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQRAYDFMRQVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P   R ++ Y+D   +F R  IE Q+++  Q EV LPS G ++++ TEAL +ID+NS R+
Sbjct: 250 PPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALTTIDINSARA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
            +   IE+TAL TNLEAAEEIARQLRLRDL GLIV+DFIDM   +N R+VE +L+E L++
Sbjct: 310 NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGLLEMSRQR+R S+ E+   VC  C G G +R   S+ LS+LR +EE
Sbjct: 370 DRARVQIGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLGLSVLRLIEE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +++     V  +LLN+KRA +   E R+G  + VV    L    F IE+  
Sbjct: 430 GAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFVVPNSHLETPTFEIERIK 489

Query: 570 PVQALV---------------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
             +                  N  +        PS   +   V     L P P+ + +  
Sbjct: 490 DARKGESRMDKRIEMQSYQMANEPNPKKPALLPPSAIPDEPLVRAGSPLFPAPEPQPVTT 549

Query: 615 IQDN-----------IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                            ++         +  +     A +   A      S  +      
Sbjct: 550 EAQPDFLRRFWTTFMDGNQALGVAEGVTQETKVVSEEAGERGRAVPRRGRSQGRGRRGSG 609

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                + S   N +     +   +     S    +    + + SS+ P  + T
Sbjct: 610 RQPNRKESTQGNESTTGLSSEAESGQV-ASEAKETQDMQDGTESSAAPSSRTT 661



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 4/112 (3%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+H EE RV ++    +++LD E+  ++Q K NIY  K+TR+EPSL A F+DYG
Sbjct: 2   KRMLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFIDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPF---SDRQALLKESNIAQTDSEAVADDVTHGD 111
            +R GFLP  E+   Y+Q       DR   ++E      +     +    G+
Sbjct: 62  ADRQGFLPLKEVTRSYFQSHQREPGDRPK-VQEVLKEGQELVVQVEKEERGN 112


>gi|301644498|ref|ZP_07244493.1| ribonuclease E [Escherichia coli MS 146-1]
 gi|301077162|gb|EFK91968.1| ribonuclease E [Escherichia coli MS 146-1]
          Length = 1061

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|300950181|ref|ZP_07164125.1| ribonuclease E [Escherichia coli MS 116-1]
 gi|300954376|ref|ZP_07166830.1| ribonuclease E [Escherichia coli MS 175-1]
 gi|300318612|gb|EFJ68396.1| ribonuclease E [Escherichia coli MS 175-1]
 gi|300450466|gb|EFK14086.1| ribonuclease E [Escherichia coli MS 116-1]
 gi|323942553|gb|EGB38720.1| rne/Rng family protein ribonuclease [Escherichia coli E482]
          Length = 1061

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|16129047|ref|NP_415602.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107930|ref|AP_001710.1| fused ribonucleaseE endoribonuclease and scaffold for formation of
           degradosome [Escherichia coli str. K-12 substr. W3110]
 gi|170080735|ref|YP_001730055.1| RNase E [Escherichia coli str. K-12 substr. DH10B]
 gi|238900338|ref|YP_002926134.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli BW2952]
 gi|256023218|ref|ZP_05437083.1| ribonuclease E [Escherichia sp. 4_1_40B]
 gi|307137719|ref|ZP_07497075.1| ribonuclease E [Escherichia coli H736]
 gi|331641628|ref|ZP_08342763.1| ribonuclease E (RNase E) [Escherichia coli H736]
 gi|34395929|sp|P21513|RNE_ECOLI RecName: Full=Ribonuclease E; Short=RNase E
 gi|1651530|dbj|BAA35893.1| fused ribonucleaseE endoribonuclease and scaffold for formation of
           degradosome [Escherichia coli str. K12 substr. W3110]
 gi|1787325|gb|AAC74168.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888570|gb|ACB02277.1| RNase E [Escherichia coli str. K-12 substr. DH10B]
 gi|238861250|gb|ACR63248.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli BW2952]
 gi|260449776|gb|ACX40198.1| ribonuclease, Rne/Rng family [Escherichia coli DH1]
 gi|315135716|dbj|BAJ42875.1| ribonuclease E [Escherichia coli DH1]
 gi|315618254|gb|EFU98844.1| ribonuclease E [Escherichia coli 3431]
 gi|331038426|gb|EGI10646.1| ribonuclease E (RNase E) [Escherichia coli H736]
          Length = 1061

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|323937824|gb|EGB34088.1| rne/Rng family protein ribonuclease [Escherichia coli E1520]
          Length = 1061

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAIPDV 537



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254226964|ref|ZP_04920528.1| ribonuclease E [Vibrio cholerae V51]
 gi|125620504|gb|EAZ48874.1| ribonuclease E [Vibrio cholerae V51]
          Length = 1052

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 205/641 (31%), Positives = 321/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     +     R  +  A+        + V +      +      E +D  N  
Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|296532551|ref|ZP_06895262.1| ribonuclease E [Roseomonas cervicalis ATCC 49957]
 gi|296267122|gb|EFH13036.1| ribonuclease E [Roseomonas cervicalis ATCC 49957]
          Length = 509

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 233/457 (50%), Positives = 311/457 (68%), Gaps = 4/457 (0%)

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
            +  D  G     +P +F R Y IQEVI+ RQI+LVQ+VKEERGNKGAA+TTY+SLAGR+
Sbjct: 45  KDDADENGREERRIPSRFMRHYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYISLAGRF 104

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
           SVLMPN+ KG  ISRKIT+  DRK L+E    L +P GM +I+RTAGA   K EI+RD E
Sbjct: 105 SVLMPNSPKGGGISRKITSVADRKRLREAIDELNMPRGMSMIVRTAGAGLPKPEIRRDCE 164

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YL+RLWD++RE  L S AP L+YEE +LIKR+IRD++ +DI EI V GE  YR+A+DFM+
Sbjct: 165 YLLRLWDDIRERTLQSTAPALIYEEADLIKRSIRDVFGRDIEEIQVEGEGAYRQARDFMR 224

Query: 327 LLM-PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           +LM  +  +I    +   P+F R G++ QLD++    V L S GY++INQTEALV+IDVN
Sbjct: 225 MLMPQNERKIRLYRDPTLPLFARHGVDAQLDAMMSPTVQLKSGGYIVINQTEALVAIDVN 284

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           SGR+TR+  IEDTAL+TN+EAAEEIARQLRLRD+AGLIV+DFIDME  +N+  VE++LKE
Sbjct: 285 SGRATRDRHIEDTALRTNMEAAEEIARQLRLRDMAGLIVIDFIDMESSRNDAQVERRLKE 344

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +LK DRAR+QVG IS+FGLLEMSRQR+R S+ E +   C +C+G G +RS  S AL +LR
Sbjct: 345 ALKHDRARIQVGRISHFGLLEMSRQRLRPSLTEHSFITCPHCQGLGIVRSPESAALQVLR 404

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +EE   +  A  I V    D+ L++LN++R  + E EAR+G+++      +L+     I
Sbjct: 405 QIEEEGAKRRAAEIQVSIAPDLALHILNRRRDRLTEIEARYGMAVLFEADAKLSGPQIRI 464

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E+     A           +    +    E    +  
Sbjct: 465 ERLRAQTAPEPQSA---PAALRMDFAPEAEPERAEAP 498


>gi|218700412|ref|YP_002408041.1| ribonuclease E [Escherichia coli IAI39]
 gi|300938651|ref|ZP_07153380.1| ribonuclease E [Escherichia coli MS 21-1]
 gi|218370398|emb|CAR18203.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Escherichia coli IAI39]
 gi|300456436|gb|EFK19929.1| ribonuclease E [Escherichia coli MS 21-1]
          Length = 1061

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|193064526|ref|ZP_03045606.1| ribonuclease E [Escherichia coli E22]
 gi|194428415|ref|ZP_03060955.1| ribonuclease E [Escherichia coli B171]
 gi|260843324|ref|YP_003221102.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli O103:H2
           str. 12009]
 gi|192927778|gb|EDV82392.1| ribonuclease E [Escherichia coli E22]
 gi|194413467|gb|EDX29749.1| ribonuclease E [Escherichia coli B171]
 gi|257758471|dbj|BAI29968.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli O103:H2
           str. 12009]
 gi|323163695|gb|EFZ49516.1| ribonuclease E [Escherichia coli E128010]
          Length = 1061

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|192361431|ref|YP_001982146.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107]
 gi|190687596|gb|ACE85274.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107]
          Length = 947

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 216/623 (34%), Positives = 321/623 (51%), Gaps = 10/623 (1%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           D+ +        +  +        S E       +  +  +   E  +     +      
Sbjct: 28  DIENRSREQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLKEISREYFSRNPGDNND 87

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I++V+K    ++VQI KEERGNKGAA+TT++SLAGRY VLMPN  +   ISR+I  
Sbjct: 88  GRIKIKDVLKEGTEVIVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 147

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + LK+    +EVP GMGVI+RTAG  R+  E++ D  YL++LW+++   A  S AP
Sbjct: 148 EDRAE-LKDALGEIEVPQGMGVIIRTAGVGRSAEELQWDLNYLLQLWESIENAAKRSPAP 206

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
             +++E N+I RAIRD   +D+ E+IV  ++ +  A  F++ +MP+Y   V+ Y+D  P+
Sbjct: 207 EFLFQESNVIIRAIRDYLRQDVGEVIVDNKEAFDLAAGFIQQVMPNYRSKVKLYQDDIPL 266

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++  Q EV LPS G ++I+ TEALV+ID+NS R+T+   IE+TALQTNLE
Sbjct: 267 FNRYQIESQIETAFQREVKLPSGGSIVIDVTEALVAIDINSSRATKGGDIEETALQTNLE 326

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+EIARQLRLRD+ GL+V+DFIDM+  +N R VE +++++L  DRARVQ+G IS FGLL
Sbjct: 327 AADEIARQLRLRDMGGLVVIDFIDMQPVRNQREVENRMRDALMMDRARVQIGRISRFGLL 386

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQR+R S+ E+ +K+C  C+G G IRS  S+ALSILR VE+   +  +  I      
Sbjct: 387 EMSRQRLRPSLGETHSKICPRCEGVGTIRSTRSLALSILRLVEDEAQKDRSAEIRAICPV 446

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
            V  YLLN+KR TI   EAR    + +V   EL    F +++          G    S  
Sbjct: 447 SVATYLLNEKRKTISSIEARNNTRVVIVPSAELMTPHFEVQRLRDDD----EGTLETSYK 502

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR--KRRRRRRRRRPATD 643
             P  D++ E        +       ++    +  + E         R  +      A D
Sbjct: 503 IVPHVDEHKEEEEDATVKVGNVPKPLVQLTAPSQPAPEPAKKPGLLDRILKGIGNLFARD 562

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL--ENGAHGFTENYDVSIPPVSTPE 701
             D       +   N  + S +           +    +N  H   +N      P     
Sbjct: 563 EDDKKKSKRDNKRDNRRNSSRNRRDNRRRDRKEDREIRDNLEHRANDNKVKEQEPEQRNN 622

Query: 702 MESSNSSS-DPIVKKTRWWKRRK 723
            +  +           R    R+
Sbjct: 623 RQQRDPQQGAEERGNRRQRTPRE 645



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++    + +LD E+  ++Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQPEELRVALVDGQWLYDLDIENRSREQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|254286848|ref|ZP_04961801.1| ribonuclease E [Vibrio cholerae AM-19226]
 gi|150423139|gb|EDN15087.1| ribonuclease E [Vibrio cholerae AM-19226]
          Length = 1051

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 205/641 (31%), Positives = 321/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     +     R  +  A+        + V +      +      E +D  N  
Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|74311645|ref|YP_310064.1| ribonuclease E [Shigella sonnei Ss046]
 gi|73855122|gb|AAZ87829.1| RNase E [Shigella sonnei Ss046]
 gi|323165594|gb|EFZ51381.1| ribonuclease E [Shigella sonnei 53G]
          Length = 1061

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254251813|ref|ZP_04945131.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
 gi|124894422|gb|EAY68302.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
          Length = 686

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 134/565 (23%), Positives = 227/565 (40%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 24  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 82

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +I    +Q   +                                    
Sbjct: 83  IGLERAAFLHVADI----WQPRVA------------------------------------ 102

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
               P +N   +  E+++      +V  ++D  G     +  +          +     +
Sbjct: 103 --GEPQSNAPHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            +    E    + A       +  R + ++P   KG  I R I        L      L 
Sbjct: 161 GISQKIESEAEREA-------VRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVAYLR 213

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I+  A        + +D +   R+  +        +                 
Sbjct: 214 KTW--ATIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTTRIQ---------------- 255

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                      V   + Y+   +F     P+ +  +  Y    P+F    IE ++     
Sbjct: 256 -----------VDSRETYQRLAEFAAEFTPAVSPKLHHYTGERPLFDLYNIETEIQRALS 304

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L 
Sbjct: 305 RRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLG 364

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+EM+R+R R S+    
Sbjct: 365 GIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHVL 424

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C+G G +++  +V   ILR +     Q+      V     V+   L+++   + 
Sbjct: 425 CEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHLA 484

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
                 G  +++ +   L+ + + I
Sbjct: 485 MLIDFIGKPVSLQVESNLSQEQYDI 509


>gi|30040864|gb|AAP16595.1| RNase E [Shigella flexneri 2a str. 2457T]
 gi|56383370|gb|AAN42707.2| RNase E [Shigella flexneri 2a str. 301]
 gi|332767694|gb|EGJ97887.1| ribonuclease E [Shigella flexneri 2930-71]
          Length = 1060

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 547

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 548 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 607

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 608 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667

Query: 707 SSSDP 711
               P
Sbjct: 668 EQQAP 672



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|309796572|ref|ZP_07690979.1| ribonuclease E [Escherichia coli MS 145-7]
 gi|308119884|gb|EFO57146.1| ribonuclease E [Escherichia coli MS 145-7]
          Length = 1061

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|284007271|emb|CBA72587.1| ribonuclease E [Arsenophonus nasoniae]
          Length = 1094

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 199/640 (31%), Positives = 321/640 (50%), Gaps = 28/640 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I N    ++ A I        E S+ +A  D  S         
Sbjct: 12  EELRVALVDGQRLYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYGSERHGFLPIK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                      +   +  I++V+K  Q +++Q+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSHYQPHGRPNIKDVLKEGQEVIIQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   +++D +Y ++ 
Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLEIPDGMGLIVRTAGVGKSAEALQQDLQYRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330
           W  +++ A N  AP L+++E N+I RA RD    DI EI++   K    A+  ++ +   
Sbjct: 191 WQAIKKAAENRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKIVDMARHHIEAIGRG 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR ++ E E R   + + +V   ++    + + +  
Sbjct: 431 ALKENTHEVHAIVPVPIASYLLNEKRQSVNEIERRQHNIRVIIVPNDQMQSPHYNVIRIR 490

Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
             + +    + +     +++     D   E    ++  +     +S  D ++ +V++  +
Sbjct: 491 KGEEISALSYYLAQYHEAETNNLIDDAAGEKKLPEQPAISTFALQSQADTKNAVVAKSKS 550

Query: 626 GVIRKRRRRRRRRRPATD----------------HHDAGVVSDVSSIQNVIDDSFDMYME 669
               K   ++  +   +                         + +  +   +   +    
Sbjct: 551 SKQSKSTNKQTSKSLFSRITVFLKKLFIESQPPIEETVKKSKNSNDKRRNSERRNNRRPT 610

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                N N+      G T++           +   +  S+
Sbjct: 611 QRREQNDNIDNRQNRGHTDDLQARKSRNQKSQFNETQDSA 650



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E+   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 SERHGFLPIKEIAREYF 78


>gi|258625454|ref|ZP_05720347.1| ribonuclease E [Vibrio mimicus VM603]
 gi|258582258|gb|EEW07114.1| ribonuclease E [Vibrio mimicus VM603]
          Length = 1034

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 198/642 (30%), Positives = 314/642 (48%), Gaps = 26/642 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C +CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPHCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      +           +   E   ++   + +      E +     +          
Sbjct: 491 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 545

Query: 632 RRRRRRRRPATDHHDAG---------------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           + +   ++       A                  +  ++             +P    N 
Sbjct: 546 KAKAETQQQVETAQPAQPGLFSRLFKAIANLFSPAPEAAKAEAAVAQSSEQEKPRRERNE 605

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                           +       + E + ++  P  +K + 
Sbjct: 606 RNDRRRNPREKNRRRGNEESSERNDKEGATNNRKPQDRKPKQ 647



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|82777304|ref|YP_403653.1| ribonuclease E [Shigella dysenteriae Sd197]
 gi|81241452|gb|ABB62162.1| RNase E [Shigella dysenteriae Sd197]
          Length = 1061

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFTERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +  S +              +         
Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSSGEETKPSEQAAPKVEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|306814067|ref|ZP_07448240.1| ribonuclease E [Escherichia coli NC101]
 gi|305852704|gb|EFM53152.1| ribonuclease E [Escherichia coli NC101]
          Length = 1061

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|333019447|gb|EGK38730.1| ribonuclease E [Shigella flexneri K-304]
          Length = 1060

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|160874865|ref|YP_001554181.1| ribonuclease [Shewanella baltica OS195]
 gi|160860387|gb|ABX48921.1| ribonuclease, Rne/Rng family [Shewanella baltica OS195]
 gi|315267101|gb|ADT93954.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678]
          Length = 1158

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 210/644 (32%), Positives = 317/644 (49%), Gaps = 22/644 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 28  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 88  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E +    AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614
               +  + +K      A  Y+                       ++A  P  K E+ + 
Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566

Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
              + +    + +     +    +         +   ++  + +N      +        
Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTSAANANRRNRRNDTRRPRNAQDADKAK 626

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  +       +  VS      P  E   +   P   + +
Sbjct: 627 EGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRPAKAEPK 670



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 80 ADRHGFLPLKEIAREYF 96


>gi|170720702|ref|YP_001748390.1| ribonuclease [Pseudomonas putida W619]
 gi|169758705|gb|ACA72021.1| ribonuclease, Rne/Rng family [Pseudomonas putida W619]
          Length = 1072

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 217/618 (35%), Positives = 313/618 (50%), Gaps = 9/618 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL VP  MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++       EA  F++ +MP YA
Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490

Query: 574 LV--NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            V  N      + ++     +             +  + +  +       EE        
Sbjct: 491 EVLNNQSSYEIAATETEEAPQPTATRTLVRQEAAVKTAPARANAPVPSAVEEQQPAAPAA 550

Query: 632 RRRRRRRR---PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                               + +           + +         N             
Sbjct: 551 PAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPVVTAEKPATERTQRNEERRNGRQQSRNR 610

Query: 689 NYDVSIPPVSTPEMESSN 706
           N           E     
Sbjct: 611 NGRRDEERKPREERAERT 628



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 62  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 106


>gi|149192305|ref|ZP_01870514.1| ribonuclease E [Vibrio shilonii AK1]
 gi|148833858|gb|EDL50886.1| ribonuclease E [Vibrio shilonii AK1]
          Length = 1014

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 198/640 (30%), Positives = 317/640 (49%), Gaps = 15/640 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 39  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 98

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 99  EIAREYFPEGYTYQGRPSIKDVLSEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 158

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D  +L+  
Sbjct: 159 NNPRAGGISRRIEGEERTE-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLRFLLNN 217

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+N++  A  + AP L+++E N+I RA+RD   +DI EI++     Y  A+  ++L+ P 
Sbjct: 218 WENIKGAADQNPAPFLIHQESNVIVRALRDYLRRDIGEILIDSNTIYERARQHIQLVRPD 277

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 278 FVNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 337

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 338 GSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRIDR 397

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 398 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 457

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+      +      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 458 LKDNTSQALAIVPVPIASYLLNEKRRSINHIERVQEVKITIVPDSDMETPHFEVIRVREG 517

Query: 572 QALV------NTGHKVGSDSQAPSYDKNIECVWQDEALLP---IPKSESLEDIQDNIVSE 622
           +             +   +++A   +   +    ++  L     P   +           
Sbjct: 518 EEQDLLSYLLPKKLEALKEAEAKEAEVEAKPRKIEQPALQGFATPTQNAPTPAPKPSKPA 577

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +      +++     R  +          +        +++            +N     
Sbjct: 578 KVEVKKEEKQPGLISRILSAIGSLFSSNEEPKKEPEKKEEAPKNRNGRQRRNRNNDQRRR 637

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               + + D +    + P  +    S D   +  +   RR
Sbjct: 638 NSKDSRDNDRNKNRRNKPARDEEKESKDNAQESRKQQNRR 677



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 29  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 88

Query: 63  GNRHGFLPFLEIHPDYY 79
             RHGFLP  EI  +Y+
Sbjct: 89  AERHGFLPLKEIAREYF 105


>gi|262167653|ref|ZP_06035356.1| ribonuclease E [Vibrio cholerae RC27]
 gi|262023858|gb|EEY42556.1| ribonuclease E [Vibrio cholerae RC27]
          Length = 1049

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 201/664 (30%), Positives = 316/664 (47%), Gaps = 39/664 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+T ++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTAFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608
           +      +        +         D  ++    +E +                 P  +
Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547

Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            + + ++Q        +                 +           D           + 
Sbjct: 548 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             +  D      +  N+   +              P     E    N  ++ P  ++   
Sbjct: 608 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 667

Query: 719 WKRR 722
             RR
Sbjct: 668 QDRR 671



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|331662493|ref|ZP_08363416.1| ribonuclease E (RNase E) [Escherichia coli TA143]
 gi|331060915|gb|EGI32879.1| ribonuclease E (RNase E) [Escherichia coli TA143]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|301023271|ref|ZP_07187068.1| ribonuclease E [Escherichia coli MS 69-1]
 gi|300397116|gb|EFJ80654.1| ribonuclease E [Escherichia coli MS 69-1]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPADPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|300918688|ref|ZP_07135268.1| ribonuclease E [Escherichia coli MS 115-1]
 gi|300414162|gb|EFJ97472.1| ribonuclease E [Escherichia coli MS 115-1]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|15836492|ref|NP_301016.1| axial filament protein [Chlamydophila pneumoniae J138]
 gi|8979333|dbj|BAA99167.1| axial filament protein [Chlamydophila pneumoniae J138]
          Length = 515

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 161/566 (28%), Positives = 289/566 (51%), Gaps = 65/566 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N++L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +  ++Q+AF++
Sbjct: 1   MENEILLNI-ESKEIRYAHLKNGQLFDLTIERKKVRQLKGNIYRGRVTNILRNIQSAFIN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                +GF+   +I            +   K   +   D +A+ ++ +   +    +  +
Sbjct: 60  IDERENGFIHISDI-----------LENSKKFEQMFDMDVDALPEEASEAPLLSSEEAPI 108

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE                                                   +K    +
Sbjct: 109 EE--------------------------------------------------FLKLDSPV 118

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G+KGA +T+ +S+ GRY VL+PN+     +SRKI +P  R+ LK++ R  E
Sbjct: 119 LVQVVKEPIGSKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMREQLKQLIRSFE 177

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  + +   +  +   L+  W  + E   ++  P L+Y E +++K+A+ 
Sbjct: 178 MPQDMGLICRTASTTASTEALINEAHDLLLTWKTILEKFYSTEQPCLLYSETDILKKAVI 237

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K+   +++     Y++ K  +K   P  +  +  Y D  P+F R  IE ++D   +
Sbjct: 238 TCIDKNYKRLLIDDYATYQKCKHMLKKYSPDASIKIEYYRDSIPMFERFNIEKEIDKATR 297

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 298 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 357

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 358 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 417

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL-NQKRAT 538
              +C YC G   I++  SV + I R +++ +      ++ +  H ++  Y+        
Sbjct: 418 LFTLCRYCSGNAIIKTPESVVIEIERDLKKVINHKEHSHLCLVVHPEIASYMKQENDDNE 477

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 478 MINLAKQLKAKLQINTSDSVHLNHYQ 503


>gi|209918338|ref|YP_002292422.1| ribonuclease E [Escherichia coli SE11]
 gi|218553662|ref|YP_002386575.1| ribonuclease E [Escherichia coli IAI1]
 gi|209911597|dbj|BAG76671.1| ribonuclease E [Escherichia coli SE11]
 gi|218360430|emb|CAQ97984.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Escherichia coli IAI1]
 gi|323947614|gb|EGB43618.1| rne/Rng family protein ribonuclease [Escherichia coli H120]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|307947218|ref|ZP_07662553.1| ribonuclease E [Roseibium sp. TrichSKD4]
 gi|307770882|gb|EFO30108.1| ribonuclease E [Roseibium sp. TrichSKD4]
          Length = 736

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 292/509 (57%), Positives = 363/509 (71%), Gaps = 1/509 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P  D +    +   A        DD    +     D      A      ++ ++E+    
Sbjct: 188 PAVDAKDAATDEADAFEARSDADDDEDATEADTEEDDDAPVRARSRRRRRDADDENSDDE 247

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++      ED     PE   +  +R Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLS
Sbjct: 248 DSVESVGAEDAMEEVPE-RRQAPRRHYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLS 306

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRYSVLMPNT++G  ISRKIT P DRK LK+IA  L+VP GMGVILRTAGASRTK EI
Sbjct: 307 LAGRYSVLMPNTARGGGISRKITQPTDRKRLKKIASELDVPEGMGVILRTAGASRTKAEI 366

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRDFEYLMRLW+ VR+L L S AP+LVYEEG+LIKR+IRDLY KDI++++V+GE+GYREA
Sbjct: 367 KRDFEYLMRLWETVRDLTLQSSAPNLVYEEGSLIKRSIRDLYNKDINQVLVAGEEGYREA 426

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           KDFM++LMPS+A+ V+ Y DP P+F R G+E QLD++   +VT+ S GY++INQTEALVS
Sbjct: 427 KDFMRMLMPSHAKNVQPYRDPSPLFIRFGVEPQLDAMFSPQVTMKSGGYIVINQTEALVS 486

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+ST+EH IEDTALQTNLEAAEE+ARQLRLRDLAGL+V+DFIDMEE KNNR+VE+
Sbjct: 487 IDVNSGKSTKEHNIEDTALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEENKNNRNVER 546

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           KLKE LK DRAR+QVG IS+FGLLEMSRQR+R+ VLES+T  C +C G G IRS  SVAL
Sbjct: 547 KLKECLKNDRARIQVGRISHFGLLEMSRQRLRTGVLESSTTPCPHCNGTGMIRSVESVAL 606

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +LRSVE+ LL+   HN+I+ T + V LY+LNQKRA +VE E RF V I V   + +  +
Sbjct: 607 HVLRSVEDNLLKGATHNLILRTSTTVALYVLNQKRAHLVELEGRFAVEIEVQADVMVNGQ 666

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
            + +++G  V         V         
Sbjct: 667 HYMLDRGELVDRDRFPAPVVQYVQPDTID 695



 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/153 (52%), Positives = 98/153 (64%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDA+H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MANKMLIDAAHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+     +   +A   D              
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVADRQALLEAEAAEREQDDAADSDEKPKRRRRSRAARN 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVK 153
           E    +   S +  +ES      +     E  +
Sbjct: 121 ETKEDVVASSDDELDESTSEETTEDGEAAEASE 153


>gi|331672603|ref|ZP_08373392.1| ribonuclease E (RNase E) [Escherichia coli TA280]
 gi|331070246|gb|EGI41612.1| ribonuclease E (RNase E) [Escherichia coli TA280]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|293390565|ref|ZP_06634899.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951099|gb|EFE01218.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 963

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 208/669 (31%), Positives = 329/669 (49%), Gaps = 50/669 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+++I   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 72  EIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   + Y +AK  +KL+ P 
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE ++++++++DR
Sbjct: 311 GGDIEETALSTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  
Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I VV    +    F + +    
Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMETPHFSVFRVRDG 490

Query: 572 QALVNTGHK---------VGSDSQAPSYDKNIECVWQDEALL---------PIPKSESLE 613
           + +    +              ++     +NI+    +  ++         P+P  E +E
Sbjct: 491 EEVNELSYNLARLHQGQDETLVAEESLISRNIDTTPAETPVVESAAVSLSIPMPAPEPVE 550

Query: 614 D--------------------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                                  +    E++       R     R            +  
Sbjct: 551 RKEQSGPSLLIRLLAALKGLFASEPKQEEQNKKTRNNNRNSNNNRNRRNQERRNNRRNRN 610

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY------DVSIPPVSTPEMESSNS 707
            + +NV+++      E  +  N N   N                 +  PVS   +E +  
Sbjct: 611 DNAENVVEEQTAEKAERVESRNRNQERNAKRNRKPEVIEEVINSKASTPVSEERVEPTQR 670

Query: 708 SSDPIVKKT 716
                ++K 
Sbjct: 671 RQRRDLRKK 679



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|331682588|ref|ZP_08383207.1| ribonuclease E (RNase E) [Escherichia coli H299]
 gi|331080219|gb|EGI51398.1| ribonuclease E (RNase E) [Escherichia coli H299]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|226199932|ref|ZP_03795482.1| ribonuclease E [Burkholderia pseudomallei Pakistan 9]
 gi|225927988|gb|EEH24025.1| ribonuclease E [Burkholderia pseudomallei Pakistan 9]
          Length = 776

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 197/621 (31%), Positives = 303/621 (48%), Gaps = 50/621 (8%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   IQ+ ++  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 68  KEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 127

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I     ++ L+E    L++P GM +I RTAG  R+  E++ D  YL++L
Sbjct: 128 NNPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQL 186

Query: 272 WDNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           W  +   + +     P L+Y E +L+ RAIRD +  DI EI++   + + +A+ FM ++M
Sbjct: 187 WRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVM 246

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P     V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+
Sbjct: 247 PDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARA 306

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME  K+ R VE++LK++LK 
Sbjct: 307 TKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKH 366

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+E+SRQR+R ++ E +   C  C G G+IR   S AL +LR ++E
Sbjct: 367 DRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQE 426

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      +V  +LLN+KR  I + E+RF V + ++    L    + +E+  
Sbjct: 427 EAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLR 486

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              A ++        ++  + +   E  +   A    P+ E+            S    R
Sbjct: 487 HDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQR 546

Query: 630 KR--------------------------------------------RRRRRRRRPATDHH 645
           +                                              R  R R    +  
Sbjct: 547 QSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERG 606

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEME 703
           +     +    +N                             E    +   P        
Sbjct: 607 EKAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARG 666

Query: 704 SSNSSSDPIVKKTRW-WKRRK 723
             ++      ++TR   + R+
Sbjct: 667 GRDNREGREARETREAREPRE 687



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML +A+  EE RV ++   ++ ++D E+  ++Q KGNIY   VTR+EPSL+A FV+YG +
Sbjct: 1   MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF E+   Y++     R A ++++     +     +    G+
Sbjct: 61  RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107


>gi|163853065|ref|YP_001641108.1| ribonuclease [Methylobacterium extorquens PA1]
 gi|163664670|gb|ABY32037.1| ribonuclease, Rne/Rng family [Methylobacterium extorquens PA1]
          Length = 1049

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 286/550 (52%), Positives = 369/550 (67%), Gaps = 7/550 (1%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 348 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 407

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SRKIT+  DRK LKE+   L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL 
Sbjct: 408 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 467

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE  YREAKDFM++LMP  +++V+ Y
Sbjct: 468 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 527

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            DP PIF R G+E QLD++  T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA
Sbjct: 528 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 587

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE---KKNNRSVEKKLKESLKKDRARVQV 456
           L+TNLEAAEE+ARQ+RLRDLAGL+V+DFID      K+NNR+VEK+L E+LK DRAR+QV
Sbjct: 588 LKTNLEAAEEVARQVRLRDLAGLVVIDFID---MEEKRNNRAVEKRLNEALKNDRARIQV 644

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
           G IS FGLLEMSRQRIR+ VLES++  C +C G+G++R+ SSVAL ILRS+EE LL+  +
Sbjct: 645 GRISPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSAS 704

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALV 575
           HN+++ T ++  LY+LNQKRA + + E RF V+I +     L A   F +E+G P     
Sbjct: 705 HNVVLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHE 764

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                V + + +P Y+         E+         +E   +    E       +    R
Sbjct: 765 GPVTGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGR 824

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           RRRR            +  +      DS D   + ++  +                 + P
Sbjct: 825 RRRRRRRRGGRTAGEGEARARDEDGTDSEDGAEDGAEDGDDAPDSEPEAAEAALGAAADP 884

Query: 696 PVSTPEMESS 705
             +  + +++
Sbjct: 885 DETASDADAN 894



 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 89/142 (62%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y
Sbjct: 3   NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           GGNRHGFL F EIHPDYYQIP +DR AL++     + +     +             +  
Sbjct: 63  GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122

Query: 122 EVAPIANFSQETEEESIISANN 143
             +   +  +  E  S   + +
Sbjct: 123 RGSRPDDTVKSQEAVSDAGSED 144


>gi|26247224|ref|NP_753264.1| ribonuclease E [Escherichia coli CFT073]
 gi|227886558|ref|ZP_04004363.1| ribonuclease E [Escherichia coli 83972]
 gi|300974388|ref|ZP_07172600.1| ribonuclease E [Escherichia coli MS 45-1]
 gi|301051129|ref|ZP_07197960.1| ribonuclease E [Escherichia coli MS 185-1]
 gi|26107625|gb|AAN79824.1|AE016759_98 Ribonuclease E [Escherichia coli CFT073]
 gi|227836762|gb|EEJ47228.1| ribonuclease E [Escherichia coli 83972]
 gi|300297213|gb|EFJ53598.1| ribonuclease E [Escherichia coli MS 185-1]
 gi|300410631|gb|EFJ94169.1| ribonuclease E [Escherichia coli MS 45-1]
 gi|307553086|gb|ADN45861.1| ribonuclease E [Escherichia coli ABU 83972]
 gi|315291062|gb|EFU50425.1| ribonuclease E [Escherichia coli MS 153-1]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|304409810|ref|ZP_07391430.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
 gi|307304166|ref|ZP_07583919.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
 gi|304352328|gb|EFM16726.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
 gi|306913064|gb|EFN43487.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
          Length = 1149

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 210/644 (32%), Positives = 317/644 (49%), Gaps = 22/644 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 28  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 88  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E +    AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614
               +  + +K      A  Y+                       ++A  P  K E+ + 
Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPVPALKGFAAPQKVEQAPSPTVKVEAPQP 566

Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
              + +    + +     +    +         +   ++  + +N      +        
Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTSAANANRRNRRNDTRRPRNAQDADKAK 626

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  +       +  VS      P  E   +   P   + +
Sbjct: 627 EGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRPAKAEPK 670



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 80 ADRHGFLPLKEIAREYF 96



 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 11/157 (7%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             V + V     V +       +     V      +         + +      +     
Sbjct: 787 KAVSSAVAETPAVDAVKTEEQAEVVTAEVAAPADAVSQDNEAVDAESETADDQAKREQRD 846

Query: 629 RKRRRRRRRR-------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN---- 677
            +RR RR  R       R   D  D G  +    + N    +   Y              
Sbjct: 847 GQRRSRRSPRHLRAAGQRRRRDEDDQGTSTPAQFVPNDELGADQEYPSEVASVRVEAPVV 906

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             +  A   T+    S+   +T   E+    +   VK
Sbjct: 907 ATKTDAVAETQATAKSVEVETTQASEAPVVEAPAAVK 943


>gi|333005781|gb|EGK25299.1| ribonuclease E [Shigella flexneri K-218]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|323175684|gb|EFZ61278.1| ribonuclease E [Escherichia coli 1180]
          Length = 1058

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 548 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 607

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 608 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667

Query: 707 SSSDP 711
               P
Sbjct: 668 EQQAP 672



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|299771718|ref|YP_003733744.1| Ribonuclease E(RNase E) [Acinetobacter sp. DR1]
 gi|298701806|gb|ADI92371.1| Ribonuclease E(RNase E) [Acinetobacter sp. DR1]
          Length = 1116

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 207/570 (36%), Positives = 323/570 (56%), Gaps = 13/570 (2%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L +P GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I+      
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEIQ------ 483

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                G    S  +  +   + + +  + +   + +++          +  +      + 
Sbjct: 484 -YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHAAPAANNAAGQKKANQA 542

Query: 633 RRRRRRRPATDHHDAGVV--SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            +    +P+T    + +    ++   +           + +  T   ++  GA    +  
Sbjct: 543 AQPSAAQPSTQKAASPLAWLENLFVQKQAKTIDQSRSAQNAAATIEQMVNTGAVSRGQFG 602

Query: 691 DVSIPPVSTPEMESSNS---SSDPIVKKTR 717
            V++PPV+      SN+   S  P  ++ R
Sbjct: 603 QVAVPPVAETVAAPSNNAYISQSPAKQEVR 632



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|170020520|ref|YP_001725474.1| ribonuclease E [Escherichia coli ATCC 8739]
 gi|169755448|gb|ACA78147.1| ribonuclease, Rne/Rng family [Escherichia coli ATCC 8739]
          Length = 1061

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|333008289|gb|EGK27763.1| ribonuclease E [Shigella flexneri K-272]
 gi|333019779|gb|EGK39051.1| ribonuclease E [Shigella flexneri K-227]
          Length = 1061

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQRTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|293409450|ref|ZP_06653026.1| rne [Escherichia coli B354]
 gi|291469918|gb|EFF12402.1| rne [Escherichia coli B354]
          Length = 1058

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|110805100|ref|YP_688620.1| ribonuclease E [Shigella flexneri 5 str. 8401]
 gi|110614648|gb|ABF03315.1| RNase E [Shigella flexneri 5 str. 8401]
 gi|333004895|gb|EGK24415.1| ribonuclease E [Shigella flexneri VA-6]
          Length = 1061

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|326572297|gb|EGE22292.1| ribonuclease E [Moraxella catarrhalis BC8]
          Length = 717

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ +  E  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P   P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|229513686|ref|ZP_04403148.1| ribonuclease E [Vibrio cholerae TMA 21]
 gi|229348867|gb|EEO13824.1| ribonuclease E [Vibrio cholerae TMA 21]
          Length = 1052

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
           +    E     +     R  +  A+        + V +      +      E ++  N  
Sbjct: 551 SQPVAEVQQPAQPGFFSRVFKAIASLFSTTPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|281178193|dbj|BAI54523.1| ribonuclease E [Escherichia coli SE15]
          Length = 1061

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|262276055|ref|ZP_06053864.1| ribonuclease E [Grimontia hollisae CIP 101886]
 gi|262219863|gb|EEY71179.1| ribonuclease E [Grimontia hollisae CIP 101886]
          Length = 1006

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 208/652 (31%), Positives = 324/652 (49%), Gaps = 26/652 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  S         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDNYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE   GL +P GMG+I+RTAG  ++  E++ D  YL+  
Sbjct: 129 NNPRAGGISRRIEGEERSQ-LKEAMSGLTLPQGMGLIVRTAGVGKSAEELEWDLNYLLNN 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ ++  A +  AP L+Y+E ++I RA RD   +DI E+++  EK Y +A++ ++   P 
Sbjct: 188 WERIQGAAESKTAPFLIYQESDVIARAFRDYLRRDIGEVLIDSEKVYNQARERIQATRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FLSRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GSDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G IR   S++LSILR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLSLSILRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      V  YLLN+KR ++   E    V + VV    +    F + +    
Sbjct: 428 LKENTAQVMAVVPVPVASYLLNEKRRSVQHVEKYHNVRVIVVPNANMETPHFEVVRIRGG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             + +  +++    +A   +   +    +  +    +            +  +     K 
Sbjct: 488 DEISSLSYRLPEHLEAMRENDAKDDAPTERVVKKREEPALQGFTAPASPAPVAKPAAVKE 547

Query: 632 RRRR---------------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
             +                  ++   +  +       +  +     S D     S   N 
Sbjct: 548 EAKPGLFSRLTSFISGLFSGGKQDGKEEQEESASKRDNRNRRDSKRSQDRTRRGSRNNNG 607

Query: 677 NLLENGAHGFT--ENYDVSIPPVSTPEMES---SNSSSDPIVKKTRWWKRRK 723
              E+  +     E            E +      SS  P+ K  +  +R++
Sbjct: 608 QREESSKNAEQYGEKKARRKERPENTERQEKAAKKSSRKPVEKTEKAEQRKQ 659



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 6/109 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y      YQ   + ++ L +   +     +    + 
Sbjct: 61  RHGFLPLKEIAREYFPDNYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 109


>gi|104780775|ref|YP_607273.1| ribonuclease E Rne [Pseudomonas entomophila L48]
 gi|95109762|emb|CAK14467.1| putative ribonuclease E Rne [Pseudomonas entomophila L48]
          Length = 1075

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 215/616 (34%), Positives = 323/616 (52%), Gaps = 5/616 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKPPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL VP  MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E + + VAP L+Y+E N+I RAIRD   +DI E+++       EA  F++ +MP YA
Sbjct: 191 AIKEASQDRVAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLR-DDN 489

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                 +   +  +   ++  +       +      ++     +      +         
Sbjct: 490 PDVLSSQSSYEIASTEAEEAPQPTATRTLVRQEAAVKTAPARANAPAPAVAEEPAAPAAP 549

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            +    P+        +  + + +     +  +  E       +  E   +G  ++ +  
Sbjct: 550 VQSAPEPSLFKGLVKSLVSLFAGKEEPAAAPAVNTEKPATERSSRNEERRNGRQQSRNRG 609

Query: 694 IPPVSTPEMESSNSSS 709
                  +     +  
Sbjct: 610 GRRDEERKPREERNER 625



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 64/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++ P   R  + +  +  Q     V  + 
Sbjct: 62  SERHGFLPLKEISREYFKKPPEGRVNIKEVLSEGQEVIVQVEKEE 106


>gi|323175239|gb|EFZ60852.1| ribonuclease E [Escherichia coli LT-68]
          Length = 1061

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|49116|emb|CAA47818.1| ams [Escherichia coli K-12]
          Length = 1025

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVVRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|293404370|ref|ZP_06648364.1| rne [Escherichia coli FVEC1412]
 gi|298380150|ref|ZP_06989755.1| rne [Escherichia coli FVEC1302]
 gi|291428956|gb|EFF01981.1| rne [Escherichia coli FVEC1412]
 gi|298279848|gb|EFI21356.1| rne [Escherichia coli FVEC1302]
          Length = 1058

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|227013927|gb|ACP10137.1| ribonuclease E [Vibrio cholerae O395]
          Length = 1052

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 201/664 (30%), Positives = 316/664 (47%), Gaps = 39/664 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+T ++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTAFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608
           +      +        +         D  ++    +E +                 P  +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            + + ++Q        +                 +           D           + 
Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             +  D      +  N+   +              P     E    N  ++ P  ++   
Sbjct: 611 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 670

Query: 719 WKRR 722
             RR
Sbjct: 671 QDRR 674



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|171057283|ref|YP_001789632.1| ribonuclease [Leptothrix cholodnii SP-6]
 gi|170774728|gb|ACB32867.1| ribonuclease, Rne/Rng family [Leptothrix cholodnii SP-6]
          Length = 1058

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 189/513 (36%), Positives = 278/513 (54%), Gaps = 1/513 (0%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                   +         ++             +    + + E   +    D    +   
Sbjct: 12  EERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +            R   I +VI N Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISRSYFKEGVSVRDAKISDVISNGQELLVQVEKEERGNKGAALTTFVSLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +G  +SR+I      + LKE    L+ P GM +I RTAG  R+  E++ D  Y+++LW
Sbjct: 132 NPRGGGVSRRIEGEQREE-LKENLEQLDYPKGMSLIARTAGIGRSAEELQWDLNYMLKLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + + +       L+Y+E +L+ RAIRD +  DI EI++  +  + +A+ FM  +MP  
Sbjct: 191 TAIDDASKGGRGAFLIYQESSLVIRAIRDYFSADIGEILIDTDDIFEQARQFMLHVMPDT 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  V++Y D  P+F R  IE Q+++     V LPS G ++I+ TEALV++DVNS R+TR 
Sbjct: 251 ANRVKRYRDDAPLFSRFQIEHQIETAFSRTVHLPSGGAIVIDHTEALVAVDVNSARATRG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA +TNLEAA+EIARQ RLRDL GLIVVDFIDMEE KN R VE +L+++L+ DRA
Sbjct: 311 GDIEETATRTNLEAADEIARQCRLRDLGGLIVVDFIDMEESKNRREVETRLRDALRTDRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ  +IS FGLLE+SRQR+R ++ E     C  C G G+IR   S AL ILR ++E  +
Sbjct: 371 RVQFSSISKFGLLELSRQRLRPALSEGNHITCPRCNGTGHIRDTESSALQILRIIQEESM 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    +V  +LLN+KR  I + E +   ++ +V    L    + +E+     
Sbjct: 431 KEGTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRTTVLLVPNKHLETPNYKLERLRHDD 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
             +       +  + P  +  I    + +A   
Sbjct: 491 PRLENIQASYTMIEEPEDEVGITRREKLKAKQE 523



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y++   S R A + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISRSYFKEGVSVRDAKISDVISNGQELLVQVEKEERGN 110


>gi|161485788|ref|NP_707000.3| ribonuclease E [Shigella flexneri 2a str. 301]
 gi|161486509|ref|NP_836789.2| ribonuclease E [Shigella flexneri 2a str. 2457T]
 gi|313650462|gb|EFS14869.1| ribonuclease E [Shigella flexneri 2a str. 2457T]
 gi|332759658|gb|EGJ89963.1| ribonuclease E [Shigella flexneri 2747-71]
          Length = 1063

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                              EE+    +   +   +     D   
Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|320189767|gb|EFW64423.1| Ribonuclease E [Escherichia coli O157:H7 str. EC1212]
          Length = 1061

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSTHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|82544451|ref|YP_408398.1| ribonuclease E [Shigella boydii Sb227]
 gi|81245862|gb|ABB66570.1| RNase E [Shigella boydii Sb227]
 gi|320173537|gb|EFW48733.1| Ribonuclease E [Shigella dysenteriae CDC 74-1112]
 gi|320186968|gb|EFW61681.1| Ribonuclease E [Shigella flexneri CDC 796-83]
 gi|332094071|gb|EGI99123.1| ribonuclease E [Shigella boydii 3594-74]
          Length = 1061

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|90415858|ref|ZP_01223791.1| ribonuclease E [marine gamma proteobacterium HTCC2207]
 gi|90332232|gb|EAS47429.1| ribonuclease E [marine gamma proteobacterium HTCC2207]
          Length = 1008

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 213/682 (31%), Positives = 326/682 (47%), Gaps = 57/682 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I N    ++ A I        E S+ +A  D  ++        
Sbjct: 12  EEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++ I+  Q + VQ+ KEERG+KGAA+TT++SLAGRY VLMP
Sbjct: 72  EISREYFKGKSSDGGRVNIKDAIREGQEIFVQVEKEERGSKGAALTTFISLAGRYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        L+E  RGL++P GMG I+RTAG  R   E++ D +YL++L
Sbjct: 132 NNPRAGGISRRIEGEERAD-LREAMRGLDIPEGMGAIVRTAGIGRATEELQWDLDYLLQL 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +   A  + APH +++E N+I RAIRD   +D+ E+IV  +  Y  A  F+  +MP 
Sbjct: 191 WNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLAAAFIGTVMPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y++  P+F R  IE Q+++  + EV+LPS G ++I+ TEA+VSID+NS R+T+
Sbjct: 251 FTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMVSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA  TN EAAEE+ARQLRLRD+ GLIV+DFIDM   ++ + VE  ++E+LK DR
Sbjct: 311 GGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVENTIREALKIDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQVG IS FGLLEMSRQR+R S+ E+ +K+C  CKG G IR   S+ALSILR +EE  
Sbjct: 371 ARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRSLALSILRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            +  +  I       V  +LLN+KR+ I + E+R  +++ V+   ++    F + +    
Sbjct: 431 QKEFSKEIRAIVPVSVATFLLNEKRSEIADIESRNKINVVVLPNTQMETPHFEVVRIRAQ 490

Query: 572 QALVNT-------GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI--------- 615
               +         H++ S       ++    +   E  +          I         
Sbjct: 491 DDDDSDGEFSYKLAHELSSKEPEQDLERTSAPLPISEPAVKTLVPHKPAPIMPEKAAPTA 550

Query: 616 --------------------QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
                                 +    + T   +K R R    R    + D+        
Sbjct: 551 AAAVKTEKPGLLKRIWESIFGGSSTEAKKTEDEKKTRPRGSNSRRGGQNQDSRNRQGNRR 610

Query: 656 I---------------QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                            N   +  +   + +D        N         D     V + 
Sbjct: 611 PNNRNRNRNRNEGRNDSNRDAEGTETQAKSADKQGQGRGRNDQSRPAAKQDTREQKVDSA 670

Query: 701 EMESSNSSSDPIVKKTRWWKRR 722
              +  +   P   +    K+R
Sbjct: 671 STATQTADKGPETGEGGELKKR 692


>gi|110833921|ref|YP_692780.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2]
 gi|110647032|emb|CAL16508.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2]
          Length = 1074

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 214/655 (32%), Positives = 330/655 (50%), Gaps = 31/655 (4%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+    +   D E    +    ++       +E     A             A
Sbjct: 11  PEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVD--------FGA 62

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                  ++++     +  PK  + +  I+EVIK  Q ++VQ+ KEERGNKGAA+TT++S
Sbjct: 63  ERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTFIS 122

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +   ISR+I      + LKE    L +P  MGVI+RTAG  R+  E+
Sbjct: 123 LAGRYLVLMPNNPRAGGISRRIEGEERAQ-LKEALGALNIPDEMGVIVRTAGLGRSAEEL 181

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  YL++LW ++ + + +  AP L+Y+E N+I RAIRD   KDI E+++  +K Y EA
Sbjct: 182 QWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDEA 241

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F++ +M  +   ++ Y+D  P+F R  IE Q+++  + EV LPS G ++I+ TEALVS
Sbjct: 242 QGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALVS 301

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NS R+T+   IE+TALQTNLEAAEEIARQLRLRD+ GLIVVDFIDM   +N R VE 
Sbjct: 302 IDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDVEN 361

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +++++L+ DRAR+Q+G IS FGLLE+SRQR+R S+ E+++ VC  C G G+IR   S+AL
Sbjct: 362 RMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSLAL 421

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           SILR +EE +++     I       V  YLLN+KR  +   E    V + ++    L   
Sbjct: 422 SILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHKVRVVIIPNQNLDTP 481

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYD---KNIECVWQDEALLPIPKSESLEDIQDN 618
            F +E+    Q      H++         D        +   E  + +   ++       
Sbjct: 482 HFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKTQEPAVRLMAPDTAPPPPKP 541

Query: 619 IVSEESTG-------------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
           +V+  +                        K  + ++        +      +       
Sbjct: 542 VVAAPTAQVQNLGLLARLFSWLAQVFTAEPKPAKAKKDAPQRKSDNKPRQQQNNRGRGGN 601

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             +  +     +   N N  + G  G  +N +      +  +    N +     +
Sbjct: 602 NRNDSNNSDNRAKNDNRNKRDGGKAGDNDNRNTRNKRQNDKDSGRKNDNRQADNR 656



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/108 (41%), Positives = 62/108 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+H EE RV ++   R+ +LD E   ++Q K NIY  K+TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
             RHGFLP  EI   Y+Q    D Q  +    + +   E +       
Sbjct: 62  AERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEE 109


>gi|26988635|ref|NP_744060.1| ribonuclease, Rne/Rng family [Pseudomonas putida KT2440]
 gi|24983416|gb|AAN67524.1|AE016381_1 ribonuclease E [Pseudomonas putida KT2440]
          Length = 1091

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 223/610 (36%), Positives = 320/610 (52%), Gaps = 6/610 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL VP  MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++       EA  F++ +MP YA
Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            V   +   S   A +  +          L+    +      + N     +    +    
Sbjct: 491 EV--LNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAP 548

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+V  + S+    D+     + P+                     S
Sbjct: 549 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQS 608

Query: 694 IPPVSTPEME 703
                  + E
Sbjct: 609 RNRNGRRDEE 618



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  SERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 106


>gi|281600500|gb|ADA73484.1| RNase E [Shigella flexneri 2002017]
 gi|332761432|gb|EGJ91716.1| ribonuclease E [Shigella flexneri K-671]
          Length = 1063

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|323962683|gb|EGB58261.1| rne/Rng family protein ribonuclease [Escherichia coli H489]
          Length = 1061

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQIETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|320196432|gb|EFW71055.1| Ribonuclease E [Escherichia coli WV_060327]
          Length = 1061

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|297519558|ref|ZP_06937944.1| ribonuclease E [Escherichia coli OP50]
          Length = 892

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|254514410|ref|ZP_05126471.1| ribonuclease E [gamma proteobacterium NOR5-3]
 gi|219676653|gb|EED33018.1| ribonuclease E [gamma proteobacterium NOR5-3]
          Length = 987

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 198/557 (35%), Positives = 292/557 (52%), Gaps = 4/557 (0%)

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           V+++        PK    ++ I++V+K    L+VQ+ KEERGNKGAA+TT++SL GRY V
Sbjct: 70  VKEIAREYFYRDPKDIDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTFISLPGRYMV 129

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           LMPN  +   ISR+I      + L+E    L++P GMGVI+RTAG  R+  E++ D  YL
Sbjct: 130 LMPNNPRAGGISRRIEGDDRAE-LREALSALDIPDGMGVIIRTAGVGRSAEELQWDLNYL 188

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           ++LW+ V +    + +P L+Y+E N+I RA+RD    D+ ++++     +++A DF+ ++
Sbjct: 189 LQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQAMDFVSMV 248

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           MP Y + ++ YED  P+F R  IE Q++S  Q EV LPS G ++I+ TEALVSID+NS R
Sbjct: 249 MPKYQQRIKLYEDNIPLFNRFQIESQIESAFQREVRLPSGGSIVIDPTEALVSIDINSAR 308

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           +T+   IE+TALQTNLEAA+E+ARQLRLRD+ GLIV+DFIDM   +N R+VE +++++L 
Sbjct: 309 ATKGVNIEETALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAARNQRAVETRMRDALA 368

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
            DRARVQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++LSILR +E
Sbjct: 369 IDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIVCPRCTGQGTIRDTKSLSLSILRLLE 428

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           E  ++     +      DV  YLLN+KR  + E E      + V+    L    F + + 
Sbjct: 429 EEAIKERTAEVRAIVPVDVAAYLLNEKRVALSEVETLTRARVLVIPNPNLETPHFEVTRL 488

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +   N       +   P  D   +                                 
Sbjct: 489 RDDEVDGNQQTSYKVELAVPDADSISDAHDHTLPTQEAVVQRIAPTAAPAPAEAADDAAP 548

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                       A     A       + +  +    D           +   + A    E
Sbjct: 549 AAATA---AAATAVAATAAVTAKPGLAQRLWVSFFGDPNASEEPAEVVSSESDKAEKAPE 605

Query: 689 NYDVSIPPVSTPEMESS 705
                       + + S
Sbjct: 606 ESQADTQAADDDKPKRS 622



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KMLI+A+H EE RV ++   ++ +LD E+  + Q K NIY+ K+TRVEPSL+AAFVD+G
Sbjct: 2  KKMLINATHPEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFL   EI  +Y+
Sbjct: 62 AERHGFLSVKEIAREYF 78


>gi|212635835|ref|YP_002312360.1| ribonuclease E [Shewanella piezotolerans WP3]
 gi|212557319|gb|ACJ29773.1| Ribonuclease E [Shewanella piezotolerans WP3]
          Length = 1119

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 209/660 (31%), Positives = 329/660 (49%), Gaps = 43/660 (6%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I   +    E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+K  Q +++QI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     L++P GMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALSELDIPQGMGLIVRTAGVGKDPAELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  ++E A ++ AP L+++E N+I RAIRD   +D+ EI++   + Y +AK+ + L+ 
Sbjct: 189 HHWAAIKEAAESAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   +++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERIKRYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VEK++++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEERHNVEVYVIPDPNMTTPDYRVVRHR 488

Query: 570 PVQALVNTGHKVGSDSQAP--------------------SYDKNIECVWQDEALLPIPKS 609
               +  + +K+    +A                     S  K +  V  +    P   +
Sbjct: 489 KDDQISESSYKLLEQEEAKLYEPRKLERAAPPQPALKGFSSPKKVAPVEVETKPAPAKAA 548

Query: 610 ES-----------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
           E                   E   +    ++ +   + R   RR      D         
Sbjct: 549 EPGLFAKIAAAISSLFASNEEPKVEPKQQDKGSRNGQSRNNNRRNNNRRNDPRRNRSEGR 608

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                   + +     + +    ++  +N +    +N           + E++N +++P 
Sbjct: 609 NEGRNENRNGNEQNKDKRNKSNRNDANDNRSKAQDDNKRPQRNEKPRKQAEANNENAEPK 668



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY   +TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 62 ADRHGFLPLKEIAREYF 78


>gi|331652137|ref|ZP_08353156.1| ribonuclease E (RNase E) [Escherichia coli M718]
 gi|331050415|gb|EGI22473.1| ribonuclease E (RNase E) [Escherichia coli M718]
          Length = 1061

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQAAPKVEAKPERQQDRRK 610



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|229524039|ref|ZP_04413444.1| ribonuclease E [Vibrio cholerae bv. albensis VL426]
 gi|229337620|gb|EEO02637.1| ribonuclease E [Vibrio cholerae bv. albensis VL426]
          Length = 1052

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 320/641 (49%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEE G+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEEHGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     +     R  +  A+        + V +      +      E +D  N  
Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SN++  P  +K + 
Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|300902475|ref|ZP_07120457.1| ribonuclease E [Escherichia coli MS 84-1]
 gi|301304977|ref|ZP_07211079.1| ribonuclease E [Escherichia coli MS 124-1]
 gi|300405507|gb|EFJ89045.1| ribonuclease E [Escherichia coli MS 84-1]
 gi|300839695|gb|EFK67455.1| ribonuclease E [Escherichia coli MS 124-1]
 gi|315253885|gb|EFU33853.1| ribonuclease E [Escherichia coli MS 85-1]
          Length = 1061

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|292493394|ref|YP_003528833.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4]
 gi|291581989|gb|ADE16446.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4]
          Length = 785

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 212/635 (33%), Positives = 317/635 (49%), Gaps = 27/635 (4%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149
           A+    A+ D     D+ I N    ++ A +        E S+ +   D  ++      +
Sbjct: 11  AEELRVAMVDGQHLQDLDIENPAREQKKANVYKGKITRIEPSLEAVFVDYGADRQGFLPL 70

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           ++V  G  +    +   +  +QEV+K  Q LLVQ+ KEERGNKGAA++T++SLAGRY VL
Sbjct: 71  KEVARGYFQPHQGEPGERLKVQEVLKEGQELLVQVEKEERGNKGAALSTFVSLAGRYLVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   +SR+I        L E  R LEVP GMG+I RTA   ++  E++ D  YL+
Sbjct: 131 MPNNPRAGGVSRRIEGEERS-ALLEAMRALEVPEGMGLIARTAALGKSTEELQWDLNYLL 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            LW  ++  A    AP L+Y+E ++I RA+RD    D+ EI++     Y+ A DFM+ +M
Sbjct: 190 HLWQAIQVAAQERPAPFLIYQESDVIIRALRDYLRLDVGEILIDTPDVYQRAYDFMRQVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P   + ++ Y+D   +F R  IE Q+++  Q EV LPS G ++I+ TEAL +ID+NS R+
Sbjct: 250 PHELQKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVIDYTEALTTIDINSARA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
            +   IE+TAL TNLE+AEEIARQL+LRDL GLIV+DFIDM   +N R+VE +L+E L++
Sbjct: 310 NKGEDIEETALSTNLESAEEIARQLKLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E+   VC  C G G++R   S+ LS+LR VEE
Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCSGRGHVRGVESLGLSVLRLVEE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK-- 567
              +     ++V     V  +LLN+KR  +   E R+ V + +V    L    F IE+  
Sbjct: 430 GAAKEKTARMVVQLPISVASFLLNEKRTNLATIEKRYEVHLFLVPNPHLETPAFKIERVK 489

Query: 568 ------GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                 G   + L    +++ ++ ++ +       V  D+ L+                 
Sbjct: 490 DKGKEEGRTDKRLEMQSYQMANEPESKNLVFAAPSVAPDQPLVKGVSPSLPPPGPKPAAP 549

Query: 622 EEST------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                           G           +  A    +      V+S +            
Sbjct: 550 AAQPHFLRHFWKVLIGGEQEPEAPEVSNQETAATPGEPSRQERVASRRGRSHGRGRRSSG 609

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                  N           +   +     T E + 
Sbjct: 610 RRQNRRENTQSKEVSPEVGSVQPAPEVKETQERQK 644



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+H EE RV ++    +++LD E+  ++Q K N+Y  K+TR+EPSL+A FVDYG
Sbjct: 2   KRMLINATHAEELRVAMVDGQHLQDLDIENPAREQKKANVYKGKITRIEPSLEAVFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPF-SDRQALL-KESNIAQTDSEAVADDVTHGD 111
            +R GFLP  E+   Y+Q       + L  +E      +     +    G+
Sbjct: 62  ADRQGFLPLKEVARGYFQPHQGEPGERLKVQEVLKEGQELLVQVEKEERGN 112


>gi|258648379|ref|ZP_05735848.1| ribonuclease G [Prevotella tannerae ATCC 51259]
 gi|260851549|gb|EEX71418.1| ribonuclease G [Prevotella tannerae ATCC 51259]
          Length = 529

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 147/570 (25%), Positives = 251/570 (44%), Gaps = 67/570 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++++    +E  + +L D R+ E   E + +    GNIYLAKV ++ P L A FV+
Sbjct: 1   MTSEVIVNV-QPKEISIALLEDKRLVEFQQEGKEESFSVGNIYLAKVKKIMPGLNACFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL +L++   Y    F     L+++           +               L
Sbjct: 60  VGHERDAFLHYLDLGIHYRS--FEKYLQLIQDGKKGNLPLTKAS-----------GQSDL 106

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+   I N  ++ +E  +  A   + +                                L
Sbjct: 107 EKDGSIQNTLKQGQEVLVQIAKEPISTK----------------------------GPRL 138

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I                S AGR+ VL+P   K    ++  +     +   +      
Sbjct: 139 TCEI----------------SFAGRFIVLIPFCDKISVSTKIKSAQERAR--LKQLISSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH------LVYEEGNL 294
            P G G I+RT    +   E+  + + L++ W +       + A        L YEE + 
Sbjct: 181 KPKGFGCIIRTVAEGKRVAELDLELKTLLKRWTDAIAKIQKNKALTQPKFPLLCYEETSR 240

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
               +RDL+      I V  E  Y++ +D+++L+ P   +IV+ Y+   PIF    +  Q
Sbjct: 241 TVALLRDLFNPSYENIYVDDESVYKDVQDYVRLIAPDRQQIVKLYKGKVPIFDNFSVTKQ 300

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQ 413
           + +     +T     Y+II  TEAL  +DVNSG RS      E  AL  NL AA+E+ARQ
Sbjct: 301 IKTSFGRTITYKHGAYLIIEHTEALHVVDVNSGNRSKSPEGQEVNALDVNLGAADELARQ 360

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLRD+ G+IVVDFIDM   +N + + +++ E++KKDRAR  +  +S FGL++++RQR+R
Sbjct: 361 LRLRDMGGIIVVDFIDMNLAENRQKLYERMVENMKKDRARHNILPLSKFGLMQITRQRVR 420

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            ++     + C  C G G I+S      ++   ++    +     I +H H  V  YL  
Sbjct: 421 PAMDVKVEESCPTCGGTGKIKSSLLFTDALEGKIQMLADKLNYRKIRLHVHPFVAAYLDK 480

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLF 563
              +   +++ R  ++I V+   +L+   +
Sbjct: 481 GLLSLRRKWQLRHKINIQVIPNQKLSYLQY 510


>gi|191168483|ref|ZP_03030271.1| ribonuclease E [Escherichia coli B7A]
 gi|193069439|ref|ZP_03050393.1| ribonuclease E [Escherichia coli E110019]
 gi|256018659|ref|ZP_05432524.1| ribonuclease E [Shigella sp. D9]
 gi|260854567|ref|YP_003228458.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli O26:H11
           str. 11368]
 gi|260867447|ref|YP_003233849.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli O111:H-
           str. 11128]
 gi|293433374|ref|ZP_06661802.1| rne [Escherichia coli B088]
 gi|300816786|ref|ZP_07097006.1| ribonuclease E [Escherichia coli MS 107-1]
 gi|332279728|ref|ZP_08392141.1| ribonuclease E [Shigella sp. D9]
 gi|190901502|gb|EDV61263.1| ribonuclease E [Escherichia coli B7A]
 gi|192957187|gb|EDV87636.1| ribonuclease E [Escherichia coli E110019]
 gi|257753216|dbj|BAI24718.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli O26:H11
           str. 11368]
 gi|257763803|dbj|BAI35298.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
           degradosome binding protein [Escherichia coli O111:H-
           str. 11128]
 gi|291324193|gb|EFE63615.1| rne [Escherichia coli B088]
 gi|300530560|gb|EFK51622.1| ribonuclease E [Escherichia coli MS 107-1]
 gi|323156891|gb|EFZ43025.1| ribonuclease E [Escherichia coli EPECa14]
 gi|323185793|gb|EFZ71154.1| ribonuclease E [Escherichia coli 1357]
 gi|324117345|gb|EGC11252.1| rne/Rng family protein ribonuclease [Escherichia coli E1167]
 gi|332102080|gb|EGJ05426.1| ribonuclease E [Shigella sp. D9]
          Length = 1061

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|15801201|ref|NP_287218.1| ribonuclease E [Escherichia coli O157:H7 EDL933]
 gi|15830716|ref|NP_309489.1| ribonuclease E [Escherichia coli O157:H7 str. Sakai]
 gi|168767743|ref|ZP_02792750.1| ribonuclease E [Escherichia coli O157:H7 str. EC4486]
 gi|168783614|ref|ZP_02808621.1| ribonuclease E [Escherichia coli O157:H7 str. EC4076]
 gi|168790019|ref|ZP_02815026.1| ribonuclease E [Escherichia coli O157:H7 str. EC869]
 gi|195935474|ref|ZP_03080856.1| ribonuclease E [Escherichia coli O157:H7 str. EC4024]
 gi|208805839|ref|ZP_03248176.1| ribonuclease E [Escherichia coli O157:H7 str. EC4206]
 gi|208815535|ref|ZP_03256714.1| ribonuclease E [Escherichia coli O157:H7 str. EC4045]
 gi|208822046|ref|ZP_03262365.1| ribonuclease E [Escherichia coli O157:H7 str. EC4042]
 gi|209400957|ref|YP_002269930.1| ribonuclease E [Escherichia coli O157:H7 str. EC4115]
 gi|217328065|ref|ZP_03444147.1| ribonuclease E [Escherichia coli O157:H7 str. TW14588]
 gi|254792466|ref|YP_003077303.1| ribonuclease E [Escherichia coli O157:H7 str. TW14359]
 gi|261227011|ref|ZP_05941292.1| ribonuclease E [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256245|ref|ZP_05948778.1| ribonuclease E [Escherichia coli O157:H7 str. FRIK966]
 gi|291282104|ref|YP_003498922.1| Ribonuclease, Rne/Rng family [Escherichia coli O55:H7 str. CB9615]
 gi|12514625|gb|AAG55830.1|AE005318_7 RNase E, membrane attachment, mRNA turnover, maturation 5S RNA
           [Escherichia coli O157:H7 str. EDL933]
 gi|13360926|dbj|BAB34885.1| RNase E [Escherichia coli O157:H7 str. Sakai]
 gi|188999086|gb|EDU68072.1| ribonuclease E [Escherichia coli O157:H7 str. EC4076]
 gi|189363122|gb|EDU81541.1| ribonuclease E [Escherichia coli O157:H7 str. EC4486]
 gi|189370502|gb|EDU88918.1| ribonuclease E [Escherichia coli O157:H7 str. EC869]
 gi|208725640|gb|EDZ75241.1| ribonuclease E [Escherichia coli O157:H7 str. EC4206]
 gi|208732183|gb|EDZ80871.1| ribonuclease E [Escherichia coli O157:H7 str. EC4045]
 gi|208737531|gb|EDZ85214.1| ribonuclease E [Escherichia coli O157:H7 str. EC4042]
 gi|209162357|gb|ACI39790.1| ribonuclease E [Escherichia coli O157:H7 str. EC4115]
 gi|209773298|gb|ACI84961.1| RNase E [Escherichia coli]
 gi|209773300|gb|ACI84962.1| RNase E [Escherichia coli]
 gi|209773302|gb|ACI84963.1| RNase E [Escherichia coli]
 gi|209773304|gb|ACI84964.1| RNase E [Escherichia coli]
 gi|209773306|gb|ACI84965.1| RNase E [Escherichia coli]
 gi|217318492|gb|EEC26918.1| ribonuclease E [Escherichia coli O157:H7 str. TW14588]
 gi|254591866|gb|ACT71227.1| RNase E [Escherichia coli O157:H7 str. TW14359]
 gi|290761977|gb|ADD55938.1| Ribonuclease, Rne/Rng family [Escherichia coli O55:H7 str. CB9615]
 gi|320637535|gb|EFX07335.1| ribonuclease E [Escherichia coli O157:H7 str. G5101]
 gi|320643096|gb|EFX12297.1| ribonuclease E [Escherichia coli O157:H- str. 493-89]
 gi|320648554|gb|EFX17209.1| ribonuclease E [Escherichia coli O157:H- str. H 2687]
 gi|320653868|gb|EFX21942.1| ribonuclease E [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659348|gb|EFX26917.1| ribonuclease E [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664483|gb|EFX31634.1| ribonuclease E [Escherichia coli O157:H7 str. LSU-61]
 gi|326339306|gb|EGD63120.1| Ribonuclease E [Escherichia coli O157:H7 str. 1125]
 gi|326344733|gb|EGD68481.1| Ribonuclease E [Escherichia coli O157:H7 str. 1044]
          Length = 1061

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|157159193|ref|YP_001462318.1| ribonuclease E [Escherichia coli E24377A]
 gi|300922610|ref|ZP_07138710.1| ribonuclease E [Escherichia coli MS 182-1]
 gi|301328546|ref|ZP_07221607.1| ribonuclease E [Escherichia coli MS 78-1]
 gi|157081223|gb|ABV20931.1| ribonuclease E [Escherichia coli E24377A]
 gi|300421087|gb|EFK04398.1| ribonuclease E [Escherichia coli MS 182-1]
 gi|300844938|gb|EFK72698.1| ribonuclease E [Escherichia coli MS 78-1]
          Length = 1061

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|313499942|gb|ADR61308.1| Ribonuclease [Pseudomonas putida BIRD-1]
          Length = 1095

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 223/610 (36%), Positives = 320/610 (52%), Gaps = 6/610 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL VP  MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++       EA  F++ +MP YA
Sbjct: 188 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E L+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            V   +   S   A +  +          L+    +      + N     +    +    
Sbjct: 488 EV--LNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAP 545

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+V  + S+    D+     + P+                     S
Sbjct: 546 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVPAAEKPAAERSPRNEERRNGRQQS 605

Query: 694 IPPVSTPEME 703
                  + E
Sbjct: 606 RNRNGRRDEE 615



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 103


>gi|293414378|ref|ZP_06657027.1| rne [Escherichia coli B185]
 gi|291434436|gb|EFF07409.1| rne [Escherichia coli B185]
          Length = 1061

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|218549188|ref|YP_002382979.1| ribonuclease E [Escherichia fergusonii ATCC 35469]
 gi|218356729|emb|CAQ89357.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Escherichia fergusonii ATCC
           35469]
          Length = 1059

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 197/682 (28%), Positives = 315/682 (46%), Gaps = 65/682 (9%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQA----PSYDKNIECVWQDEALLPI------------------- 606
             +      + +    +     PS +++ E    ++  L                     
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEESPERKRPEQPALATFAMPDVPPVPPAPAEPVVK 550

Query: 607 ----------------------------------PKSESLEDIQDNIVSEESTGVIRKRR 632
                                               ++  E        +      R++ 
Sbjct: 551 AAPAPKAAEPAATPAQPGLLSRFFAALKSIFSGSDDAKPAEQPAPKAAEKPERQQDRRKP 610

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           R+  RR            ++ S  +     +           N   + +       +   
Sbjct: 611 RQNTRRDRNERRDTRSERTENSDNREENRRNRRQAQGAESRDNRQQVNDIEKTKPTDEQQ 670

Query: 693 SIPPVSTPEMESSNSSSDPIVK 714
           +     +         +   VK
Sbjct: 671 TPRRERSRRRNDDKRQAQAEVK 692



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|229592116|ref|YP_002874235.1| putative ribonuclease E [Pseudomonas fluorescens SBW25]
 gi|229363982|emb|CAY51521.1| putative ribonuclease E [Pseudomonas fluorescens SBW25]
          Length = 1075

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 214/527 (40%), Positives = 308/527 (58%), Gaps = 4/527 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 28  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 88  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 266

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E L+ DRAR
Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 386

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 387 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 506

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             ++G      + A +  + ++       L+    +      + N  
Sbjct: 507 EAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAP 553



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 18  KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 78  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122


>gi|331667485|ref|ZP_08368349.1| ribonuclease E (RNase E) [Escherichia coli TA271]
 gi|331065070|gb|EGI36965.1| ribonuclease E (RNase E) [Escherichia coli TA271]
          Length = 1058

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 548 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 607

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 608 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667

Query: 707 SSSDP 711
               P
Sbjct: 668 EQQAP 672



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|126173939|ref|YP_001050088.1| ribonuclease [Shewanella baltica OS155]
 gi|125997144|gb|ABN61219.1| RNAse E [Shewanella baltica OS155]
          Length = 1144

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 212/648 (32%), Positives = 319/648 (49%), Gaps = 22/648 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 28  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 88  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E +    AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614
               +  + +K      A  Y+                       ++A  P  K E+ + 
Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              + +    + +     +    +   T   D    +     +   D       + +D  
Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTSAANANRRNR-RNDTRRPRNAQDADKA 625

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                E  +    +  D ++   +          +     K R    +
Sbjct: 626 KEGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRQPKPRVQAPK 673



 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 80 ADRHGFLPLKEIAREYF 96


>gi|88705137|ref|ZP_01102849.1| ribonuclease E [Congregibacter litoralis KT71]
 gi|88700832|gb|EAQ97939.1| ribonuclease E [Congregibacter litoralis KT71]
          Length = 1003

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 205/550 (37%), Positives = 307/550 (55%), Gaps = 7/550 (1%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           + +L  +  A+    A+ D     D+ I N   L++ A I        E S+ +A  D  
Sbjct: 2   KKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61

Query: 147 SN------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
           +       V+++        PK    ++ I++V+K    L+VQ+ KEERGNKGAA+TT++
Sbjct: 62  AERHGFLSVKEIAREYFYRNPKDVDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTFI 121

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SL GRY VLMPN  +   ISR+I      + L+E    L++P GMGVI+RTAG  R+  E
Sbjct: 122 SLPGRYMVLMPNNPRAGGISRRIEGDDRAE-LREALSALDIPDGMGVIIRTAGVGRSAEE 180

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           ++ D  YL++LW+ V +    + +P L+Y+E N+I RA+RD    D+ ++++     +++
Sbjct: 181 LQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQ 240

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           A DF+ ++MP Y + ++ YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALV
Sbjct: 241 AMDFVSMVMPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALV 300

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           SID+NS R+T+   IE TALQTNLEAA+E+ARQLRLRD+ GLIV+DFIDM   KN R+VE
Sbjct: 301 SIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAVE 360

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            +++++L  DRARVQVG IS FGLLEMSRQR+R S+ E++  +C  C G G IR   S++
Sbjct: 361 NRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKSLS 420

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           LSILR +EE  ++     +      DV  YLLN+KR  + E E+   V + V+    L  
Sbjct: 421 LSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVESLTRVRVLVIPNPNLET 480

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             F + +    +   +       +   P  D   +                         
Sbjct: 481 PHFEVTRLRDDEVEGDQQTSYKVEIAVPDADSISDSHDHSLPTQEAVVQRIAPTAAPAPT 540

Query: 621 SEESTGVIRK 630
           +   +     
Sbjct: 541 AVADSEATEP 550



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KMLI+A+H EE RV ++   ++ +LD E+  + Q K NIY+ K+TRVEPSL+AAFVD+G
Sbjct: 2  KKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFL   EI  +Y+
Sbjct: 62 AERHGFLSVKEIAREYF 78


>gi|113460860|ref|YP_718927.1| ribonuclease E [Haemophilus somnus 129PT]
 gi|112822903|gb|ABI24992.1| RNAse E [Haemophilus somnus 129PT]
          Length = 942

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 191/560 (34%), Positives = 299/560 (53%), Gaps = 2/560 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
           ++ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MPN  +   ISR+I
Sbjct: 84  YQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI 143

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                 + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  W+ +++ + +  
Sbjct: 144 EGDERLE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP 202

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+++E ++I RAIRD   +DI EI++   K Y +AK  +KL+ P +   V+ Y+   
Sbjct: 203 APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEV 262

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR   IE+TAL TN
Sbjct: 263 PLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDINSARSTRGGDIEETALNTN 322

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E++++DRAR+Q+  IS FG
Sbjct: 323 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRFG 382

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           LLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  L+     +    
Sbjct: 383 LLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEALKENTKQVHTIV 442

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
              +  YLLN+KR  I   E R  V I V     +    F + +    + +    + +  
Sbjct: 443 PVQIASYLLNEKRKAIHSIEKRHNVDIVVAPNEAMETPHFSVFRVREGEEINELSYNLAK 502

Query: 584 DSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
             +       +E  +            ES  +     ++ E+   + + R++ R      
Sbjct: 503 LHEMNDETYVVEDAFISRHLENSAATVESAVENAAVSLAIETPAPMPQERKQERESLLRR 562

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
                  +   +S +N  + +            +    +      E+   S         
Sbjct: 563 IIEGIKNLFADNSSKNKKNKNTRQNKNARHNRRNQDRRSSRRIRQEHEIKSDENNKLDTQ 622

Query: 703 ESSNSSSDPIVKKTRWWKRR 722
            S  +       K      +
Sbjct: 623 HSHYTERYSKHAKKGVDDPQ 642



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E+   +Q K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 VERHGFLPLKEIAREYF 78


>gi|42525174|ref|NP_970554.1| ribonuclease G [Bdellovibrio bacteriovorus HD100]
 gi|39577385|emb|CAE81208.1| ribonuclease G [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 166/567 (29%), Positives = 284/567 (50%), Gaps = 67/567 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+    +ETRV  +    + +L  E +    + G+I+   V RV P +QAAFV 
Sbjct: 1   MSAEILINV-RPQETRVAYVDGGILTDLKIERKTSPTLVGSIHRGTVIRVLPGMQAAFV- 58

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                       +I                    + +     V D     D    +    
Sbjct: 59  ------------DIG-------------------LEKAAFLYVGDIREDVDDNFLSAVDR 87

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           EE     +                                P     +  IQ+++K  Q +
Sbjct: 88  EEPLDEGDDD-----------------------------KPLSHASKTPIQDLVKEGQSI 118

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ K+  G KGA +TT+LSL GR+ V +P       ISR+I +  +R+ L+++ + + 
Sbjct: 119 LVQVSKDPLGTKGARLTTHLSLPGRFVVFLPTVRHLG-ISRRIEDEGERERLRKLVQKIN 177

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RTAG   ++  +K D EYL RL   + +       P  ++ E ++  RA+R
Sbjct: 178 PS--GGVIVRTAGDGASEEMLKADIEYLDRLSKEIFKNYEKKKTPGTLHTELDVELRALR 235

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL  +D++ + V   + +++   F+   MP Y + +  YE+  P+F    I++++    +
Sbjct: 236 DLMSEDVTSVWVDDVEIHKKVVKFVSQFMPKYKQNIVLYEEKKPLFDLYDIDIEISRSME 295

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L S GY++I++ EALV IDVN+G+   +  +EDT L+TNLEA  E A QLR+R+  
Sbjct: 296 RKIWLKSGGYIVIDEAEALVVIDVNTGKFVGKKDLEDTILKTNLEAVRETAHQLRVRNCG 355

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ +   V + L E L +DRAR  + ++S  GL+EM+R+RIR S++++ 
Sbjct: 356 GIIIIDFIDMEKESHREKVLEALAEELARDRARTNIVSMSQLGLVEMTRKRIRPSLIKTL 415

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYL--LQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            + C+YC+G GYI+ +S+VA  I R +E     L     N+++H HS+VV ++   +  +
Sbjct: 416 CEPCSYCEGKGYIKRKSTVANEIFRELERDADMLINKKTNVVIHCHSEVVDWIYEVEGES 475

Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565
           +   E + G S+   I      + + I
Sbjct: 476 LEGIEKKLGRSVAFKIEPNYHLEQYEI 502


>gi|218709010|ref|YP_002416631.1| ribonuclease E [Vibrio splendidus LGP32]
 gi|218322029|emb|CAV18067.1| ribonuclease E [Vibrio splendidus LGP32]
          Length = 1041

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 201/667 (30%), Positives = 322/667 (48%), Gaps = 42/667 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV++  Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     +  A+  ++L+ P 
Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQ-------DEA-----LLPIPKSESLEDIQDNI 619
           +      + + +  +A    ++ E   Q       +E        P   + +   +   +
Sbjct: 491 EEFDLLSYLLPTKLEALKEAESKEPAEQTIRPKKIEEPALKGFAAPAQSAPTPAPVPKAV 550

Query: 620 VSEESTGVIRKRRR------------------------RRRRRRPATDHHDAGVVSDVSS 655
             +++     +                             ++     ++ + G       
Sbjct: 551 EEKKAESAATQEPGLVGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNRNNGNRQRRDR 610

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             N   +      E       N  EN  +           P    E     +      K+
Sbjct: 611 NDNRRRNQRGDRGEQRGERGDNRNENRDNKRRRKPVRDEKPEEQKETAPQQNRQPRKPKQ 670

Query: 716 TRWWKRR 722
            R  K R
Sbjct: 671 DRRNKPR 677



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 109



 Score = 38.0 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 38/155 (24%), Gaps = 16/155 (10%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +    T  +     + P  D+  +   + +    +  S+  E+        ++  
Sbjct: 647 RDEKPEEQKETAPQQNRQPRKPKQDRRNKPRDEQKQREELAPSKLAEEGLQLAAEAQADK 706

Query: 627 --------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                         +  +R+RR+  ++       A    + S              +   
Sbjct: 707 LEAPKAKPEAKAAKIKERRQRRKLNKQVRIKDQQAEAAENSS--NESAVAKEQSIAKEQS 764

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
           +     +         N D         +  +  S
Sbjct: 765 VAQEQKVAEQVEATQANADEQTEQEEPKQRRNRRS 799


>gi|89900509|ref|YP_522980.1| ribonuclease [Rhodoferax ferrireducens T118]
 gi|89345246|gb|ABD69449.1| RNAse E [Rhodoferax ferrireducens T118]
          Length = 1007

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 191/512 (37%), Positives = 281/512 (54%), Gaps = 2/512 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QAEERRLAIVDGQKLLDYEIEIEGCEQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +       P     Q  IQ+ I+  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISRQYFQPGVAVGQARIQDAIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I        LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGEDRAD-LKEALDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A  +    L+Y+E +L+ RAIRD +  DI +I++  +  + +A+ FM  +MP
Sbjct: 189 LWAAIDGAAKGAKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDVFDQAQQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHADRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAAEE+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L++SL++D
Sbjct: 309 KGSDIEETATRTNLEAAEEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENRLRDSLRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ   IS FGL+EMSRQR+R ++ E  +  C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFATISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+    +++     +V  +LLN+KRA I + E +  +++ +V    L    + +E+   
Sbjct: 429 SLKDNTASVLCQVPVEVASFLLNEKRAEIAKIELKQRINVLMVPNKTLETPNYKLERLKH 488

Query: 571 VQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
               L N         Q            +  
Sbjct: 489 DDPRLDNIESSYKLADQMEDATAVTRRSQEPT 520



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 66/109 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E  +Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQAEERRLAIVDGQKLLDYEIEIEGCEQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+Q   +  QA ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEISRQYFQPGVAVGQARIQDAIREGQELLVQVEKEERGN 110


>gi|218704494|ref|YP_002412013.1| ribonuclease E [Escherichia coli UMN026]
 gi|300899605|ref|ZP_07117844.1| ribonuclease E [Escherichia coli MS 198-1]
 gi|218431591|emb|CAR12470.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
           degradosome binding protein [Escherichia coli UMN026]
 gi|300356876|gb|EFJ72746.1| ribonuclease E [Escherichia coli MS 198-1]
          Length = 1061

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|319787309|ref|YP_004146784.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1]
 gi|317465821|gb|ADV27553.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1]
          Length = 1089

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 201/535 (37%), Positives = 297/535 (55%), Gaps = 5/535 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151
            A+    A+ D  T  D+ I      ++ + I        E S+ +A  +  +       
Sbjct: 10  QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGAERHGFLP 69

Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             +  I+E+++  Q ++VQ+ K+ERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  LKEISRDYFQAGVDPNKAGIRELLREGQEVVVQVDKDERGNKGAALTTFISLAGRYMVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN+     +SR+I      + LK     L +P  MGVI+RTAG  R   E++ D +YL+ 
Sbjct: 130 PNSPTPGGVSRRIEGEDRAE-LKRAMDALNIPDDMGVIIRTAGVGRDAEELQWDLDYLLA 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W  V E AL+  AP L+Y+E  LI RA+RD    DI EI+V  E+ Y +A+ FM+ +MP
Sbjct: 189 AWRAVAEAALSKPAPFLIYQESRLIIRALRDYLRADIGEILVDTEEMYNDARQFMEQVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              R ++ Y D  P+F R  IE Q+++ ++  V LPS G ++I+QTEAL +IDVNS R+T
Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAIDVNSARAT 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM   K+ R+VE +L+ +LK D
Sbjct: 309 KGGDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSSKHQRAVEDRLQNALKYD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ+G IS FGLLEMSRQR+R+S+ ES+  VC  C+G G +RS  S++LSI+R  EE+
Sbjct: 369 RARVQIGRISRFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSIESLSLSIIRVAEEH 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     ++V    ++  +LLN+KR  + E E R    I +V   +L    + + +   
Sbjct: 429 AMKENTGQVLVQAPVEIANFLLNEKRGALREIEQRHDAPIIIVADEQLQTPHYEVTRLRE 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +    +               +     Q     P   +         +  E   
Sbjct: 489 NELGEESNRPSYQRGTPRKLPVHALTKAQLNIPPPPAVTRVAPPRPAPVREEREE 543



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + ++D E   K+Q K NIY  ++TR+EPSL+AAFV+YG
Sbjct: 2   KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  DY+Q      +A ++E      +     D    G+
Sbjct: 62  AERHGFLPLKEISRDYFQAGVDPNKAGIRELLREGQEVVVQVDKDERGN 110


>gi|222032837|emb|CAP75576.1| ribonuclease E [Escherichia coli LF82]
 gi|312945646|gb|ADR26473.1| ribonuclease E [Escherichia coli O83:H1 str. NRG 857C]
          Length = 1061

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +           +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +        T     +         
Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|187730344|ref|YP_001880747.1| ribonuclease E [Shigella boydii CDC 3083-94]
 gi|187427336|gb|ACD06610.1| ribonuclease E [Shigella boydii CDC 3083-94]
          Length = 1061

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALANLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|161503727|ref|YP_001570839.1| ribonuclease E [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160865074|gb|ABX21697.1| hypothetical protein SARI_01812 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1069

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 189/627 (30%), Positives = 307/627 (48%), Gaps = 10/627 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSADALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +   P   + +   + +   +        
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERK--RPEQPALATFAMPEVPPAPTPAEPTV 548

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +     A      G+ S   +    +    +              +         
Sbjct: 549 NVATAKNANVAAAQPAQPGLFSRFLNALKQLFSGDEETKTVEKAAPKVEEKPERQQDRRK 608

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
              +         ++ ++ ++    ++
Sbjct: 609 PRQNNRRDRNERRDTRDNRAERDGSES 635



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|119945868|ref|YP_943548.1| ribonuclease, Rne/Rng family protein [Psychromonas ingrahamii 37]
 gi|119864472|gb|ABM03949.1| RNAse E [Psychromonas ingrahamii 37]
          Length = 1065

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 209/627 (33%), Positives = 319/627 (50%), Gaps = 18/627 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            A+    A+ D     D+ I +    ++ A I        E S+ +A  +  +       
Sbjct: 10  QAEELRVALVDGQMLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVEYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                 +       FK +  I++VIK  Q +++QI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIARTYFPEGYSFKGRPNIKDVIKEGQEVIIQIEKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    L++P GMG+I+RTAG  +T  E++ D   L+
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEALSHLKLPNGMGLIVRTAGVGKTPEELEWDLNVLV 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A    AP L++ E N+I R+IRD   +DI EI++   K +  AK+ + ++ 
Sbjct: 189 NHWQAIDEAARAQPAPFLIHRESNVIVRSIRDYLRRDIGEIVIDHAKTFELAKNHIAMVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P Y   ++ Y+   P+F    +E Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDYVSRLKLYQGEVPLFTHYQVESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TR   IE+TA  TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +++ES+++
Sbjct: 309 TRGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPPRHQREVENRMRESVRQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGL+EMSRQR+R S+ ES ++VC  C G G IR   S+AL+ILR +EE
Sbjct: 369 DRARIQLGRISRFGLMEMSRQRLRPSLGESASRVCPRCHGQGTIRDNESLALAILRLIEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             L+     I       V  YLLN+KR  + + E R    + ++    L    F I++  
Sbjct: 429 EGLKENTVQIQATVPVAVAAYLLNEKRKDVQKIEKRHSCEVYIIPNANLLTPHFEIKRTR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                 +  +              I+    +EA          + +     S +      
Sbjct: 489 K-DGKEDINYDALEKQHTVYVPNVIKDEHNNEA----------DPVLSGFSSPKQKTTEE 537

Query: 630 KRRRRRRRRRPAT-DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           K  ++     P T +     + S + S  + + +  +  +   +     + E   +    
Sbjct: 538 KTVKKEIIPEPKTVEAAKPSLFSKIISAISSLFNDSEKQLPVEEKEAPPVAEPVTNNRNN 597

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715
             +      +    E S ++  P   K
Sbjct: 598 RNNSRNRNRNQNRAEKSRTTQAPTEAK 624



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 52/77 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++    + +LD ES   +Q K NIY  K+TRVEPSL+AAFV+YG
Sbjct: 2  KRMLINATQAEELRVALVDGQMLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI   Y+
Sbjct: 62 AERHGFLPLKEIARTYF 78


>gi|330962633|gb|EGH62893.1| ribonuclease E [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 1101

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 223/675 (33%), Positives = 323/675 (47%), Gaps = 59/675 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   +  E V   
Sbjct: 488 EAHNNQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAEPVATP 547

Query: 601 EA----------------------LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                                     P       + + +   +        +++ R R  
Sbjct: 548 APVVHEPSLFKGLVKSLVSLFASKEEPAAPVVVEKPVAEQRPARNEERRNGRQQSRGRNN 607

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           R   +       +                 E         +        E+      P  
Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPAR 667

Query: 699 TPEMESSNSSSDPIV 713
           T        + +   
Sbjct: 668 TSRERKPREAREDRP 682



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|324017412|gb|EGB86631.1| ribonuclease E [Escherichia coli MS 117-3]
          Length = 1061

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 187/600 (31%), Positives = 294/600 (49%), Gaps = 8/600 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +      + +    +      + E   + +       +                    
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPPPADPAAPV 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                +            G++S        +    +              +         
Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|284920909|emb|CBG33972.1| ribonuclease E [Escherichia coli 042]
          Length = 1061

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|37679450|ref|NP_934059.1| ribonuclease E [Vibrio vulnificus YJ016]
 gi|37198194|dbj|BAC94030.1| ribonuclease E [Vibrio vulnificus YJ016]
          Length = 1036

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 200/650 (30%), Positives = 321/650 (49%), Gaps = 29/650 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 191 WAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629
           + +    + +         +   E   ++         +  E +       ++       
Sbjct: 491 EEVDLLSYLL-----PKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQSVPAPAP 545

Query: 630 KRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           K    +            G+    + ++ + +  S +  +E       +  E G      
Sbjct: 546 KAVVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVEAEKTERKDEREKGNRRQKR 605

Query: 689 NYDVSIP---------------PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           + +                          + +   +     K R  ++RK
Sbjct: 606 DRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDEAIKPRSQQKRK 655



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEER 109


>gi|217973819|ref|YP_002358570.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223]
 gi|217498954|gb|ACK47147.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223]
          Length = 1154

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 210/644 (32%), Positives = 317/644 (49%), Gaps = 22/644 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 28  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 88  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E +    AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614
               +  + +K      A  Y+                       ++A  P  K E+ + 
Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566

Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
              + +    + +     +    +         +   ++  + +N      +        
Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTTDTSAANANRRNRRNDTRRPRNAQDADKAK 626

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  +       +  VS      P  E   +   P   + +
Sbjct: 627 EGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRPAKAEPK 670



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 80 ADRHGFLPLKEIAREYF 96


>gi|332139672|ref|YP_004425410.1| ribonuclease G [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549694|gb|AEA96412.1| ribonuclease G [Alteromonas macleodii str. 'Deep ecotype']
          Length = 488

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 215/565 (38%), Gaps = 80/565 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+RV ++ +  ++E+  E   K+ + GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLINVT-PSESRVALIENGILQEIHVERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I      I       + +E + +    + + + V  G   +      
Sbjct: 60  IGLEKAAFLHASDIV-----IHNE----IAEEVSASHIQKQDIRELVRDGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S        V++V   +    E   ++   +  +QE        
Sbjct: 111 PIGTKGARLTTDITIPSRYLVFMPSVTHVGVSQRIEEEVERERL--KSLVQEFCDENGGF 168

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +++   E  G                              R++ + +  +  K  +  L 
Sbjct: 169 ILRTAAEGVGKNELQSDAAFL-------------------RRLWDKIQSRMKKRKSNVLY 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
               +   +           I+ D +          +  +  +   L Y  G+     + 
Sbjct: 210 EDLPLARRVLRDFVGTELDRIRIDSKLSFNELHQFTKEYVPEMNGKLEYYTGDRPIFDLY 269

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D                                                 +E +     +
Sbjct: 270 D-------------------------------------------------VENEAQRALE 280

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY+II+QTEA+ +ID+N+G       +E+T   TN EA + IARQLRLR+L 
Sbjct: 281 RRVDLKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNTEATQAIARQLRLRNLG 340

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM E  + R V   L+ +  KDRA++ +   +  GL+EM+R+R R S+    
Sbjct: 341 GMILIDFIDMIEPDHKRRVLHSLEVATNKDRAKINIHGFTALGLIEMTRKRTRESIEHIL 400

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  CKG G +++  ++   I+R +      Y A   +V+    V   L+ ++   + 
Sbjct: 401 CGECPVCKGRGTVKTIETICFEIMREIVRVNRAYDADKFVVYASPKVAEALMGEESHMLA 460

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E      I V          + +
Sbjct: 461 ELEVFVSKQIKVQTETLYNQDKYDV 485


>gi|157146218|ref|YP_001453537.1| ribonuclease E [Citrobacter koseri ATCC BAA-895]
 gi|157083423|gb|ABV13101.1| hypothetical protein CKO_01975 [Citrobacter koseri ATCC BAA-895]
          Length = 1065

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 187/518 (36%), Positives = 284/518 (54%), Gaps = 9/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606
             +      + +     +A +     E   +     P 
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPA 528



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|300821135|ref|ZP_07101284.1| ribonuclease E [Escherichia coli MS 119-7]
 gi|331676875|ref|ZP_08377571.1| ribonuclease E (RNase E) [Escherichia coli H591]
 gi|300526434|gb|EFK47503.1| ribonuclease E [Escherichia coli MS 119-7]
 gi|331075564|gb|EGI46862.1| ribonuclease E (RNase E) [Escherichia coli H591]
          Length = 1061

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618
             +      + +     +A +     E   +     P   + ++ D+             
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550

Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646
                                             SEE+    +   +   +     D   
Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +     +     S       +   N            E  +       T +  +++
Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670

Query: 707 SSSDP 711
               P
Sbjct: 671 EQQAP 675



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|330811002|ref|YP_004355464.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379110|gb|AEA70460.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 1062

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 226/662 (34%), Positives = 328/662 (49%), Gaps = 48/662 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E L+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE----------- 622
             +T       + A +  + ++       L+    +      + N               
Sbjct: 488 EAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVAAPVAAPA 547

Query: 623 ---------------------------------ESTGVIRKRRRRRRRRRPATDHHDAGV 649
                                             +T     R   RR  R  T + +   
Sbjct: 548 AAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPATTERPTRNEERRNGRQQTRNRNGRR 607

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
             +    +           EP +      +   A           PP    +  +     
Sbjct: 608 DEERKPREERAPREERAPREPREERQPREVREEAPAVAREERAPRPPREERQPRAPREDR 667

Query: 710 DP 711
            P
Sbjct: 668 KP 669



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|239993992|ref|ZP_04714516.1| ribonuclease G [Alteromonas macleodii ATCC 27126]
          Length = 488

 Score =  303 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 216/565 (38%), Gaps = 80/565 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+RV ++ +  ++E+  E   K+ + GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLINVT-PSESRVALIENGILQEIHVERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I      I       + +E + +    + + + V  G   +      
Sbjct: 60  IGLEKAAFLHASDIV-----IHNE----IAEEVSASHIQKQDIRELVRDGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S        V++V   +    E   ++   +  +QE        
Sbjct: 111 PIGTKGARLTTDITIPSRYLVFMPSVTHVGVSQRIEEEAERERL--KSLVQEFCDENGGF 168

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +++   E  G                              R++ + +  +  K  +  L 
Sbjct: 169 ILRTAAEGVGKNELQSDAAFL-------------------RRLWDKIQSRMKKRKSNVLY 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
               +   +           I+ D +          +  +  +   L Y  G+     + 
Sbjct: 210 EDLPLARRVLRDFVGTELDRIRIDSKLSFNELHQFTKEYVPEMNGKLEYYPGDRPIFDLY 269

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D                                                 +E +     +
Sbjct: 270 D-------------------------------------------------VENEAQRALE 280

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 281 RRVDLKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATQAIARQLRLRNLG 340

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM E  + R V   L+ +  KDRA++ +   +  GL+EM+R+R R S+    
Sbjct: 341 GMILIDFIDMIEPDHKRRVLHSLEVATNKDRAKINIHGFTALGLIEMTRKRTRESIEHIL 400

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  CKG G +++  ++   I+R +      Y A   +V+    V   L+ ++   + 
Sbjct: 401 CGECPVCKGRGTVKTIETICFEIMREIVRVNRAYDADKFVVYASPKVAEALMGEESHMLA 460

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E      I V          + +
Sbjct: 461 ELEVFVSKQIKVQTETLYNQDKYDV 485


>gi|323144881|ref|ZP_08079447.1| S1 RNA binding domain protein [Succinatimonas hippei YIT 12066]
 gi|322415348|gb|EFY06116.1| S1 RNA binding domain protein [Succinatimonas hippei YIT 12066]
          Length = 941

 Score =  303 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 191/580 (32%), Positives = 310/580 (53%), Gaps = 14/580 (2%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                   F     ++  ++  Q ++VQI KEERG KGAA+TTY+SLAG Y VLMPN  +
Sbjct: 73  EYYPQGTNFSDHAAMKAALREGQEVIVQIEKEERGQKGAALTTYISLAGSYLVLMPNNPR 132

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
              ISR+I      + LKE   G+++P GMGVI+RTAG  ++  E+  D   L +LW+ +
Sbjct: 133 AGGISRRIEGEERAE-LKEALEGIDIPQGMGVIVRTAGVGKSSEELSWDLSILTKLWEMI 191

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           ++ A    AP L+++E ++  RAIRD    DI EI++     + + + +++L+ P + + 
Sbjct: 192 KKAAGTRPAPFLIHQESSIALRAIRDYLRPDIGEILIDDRNVFEQIRHYVELVRPEFTQK 251

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           V  Y    P+F +  IE Q++S +Q EV LPS G ++I+ TEAL SIDVNS ++TR   I
Sbjct: 252 VHLYASDIPLFSKFQIESQIESAYQREVRLPSGGAIVIDPTEALTSIDVNSAKATRGGDI 311

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           E+TALQTN+EAAEEIARQLRLRD+ GLIV+DFIDM   KN R +E +++E++++DRAR+Q
Sbjct: 312 EETALQTNIEAAEEIARQLRLRDIGGLIVIDFIDMTPIKNQREIENRMREAVRQDRARIQ 371

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
              IS FGLLE+SRQR+R S+ ES++ VC  C+G G +R  SS+ALSILR +EE   +  
Sbjct: 372 FSRISRFGLLELSRQRLRPSLEESSSHVCPMCQGQGTVRDTSSLALSILRLIEEEAHKDH 431

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
             ++I     +V  ++LN+KR  + + E R+ + ++++    +    + + + +      
Sbjct: 432 QGDVIAIAPVEVATFILNEKRKHVSDIEKRYKIKVSILPDQHMMPAQYEVHRITSNGNGN 491

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
            +      + +A    K ++    + +     +  + E   ++ V  E   + ++   R 
Sbjct: 492 GSISTDLLEERAKQARKVLQESAVENSSNDTEEQNTSEPAINSEVITEMAAIPKRPAPRE 551

Query: 636 RRRRPATDHHDAG-------------VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            + R   +                    +     + V     D     S+        NG
Sbjct: 552 TKPRRKEETAQKSLLQKIIEFLSKLFSSAPDEEKKPVKGQRKDDRASRSNYRRGPNTRNG 611

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               T + + +  P  T  +  + +     VK+    + +
Sbjct: 612 KTAGTRSTEKAEKPTRTRTVGKAGAVRKSAVKEETVKEPK 651



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 50/75 (66%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   ++ +LD ES      K NIY   +TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEEVRVALVDGQKLYDLDIESPQHANKKANIYKGIITRIEPSLEAAFVDYGME 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +YY
Sbjct: 61 RHGFLPLKEIAREYY 75


>gi|148549015|ref|YP_001269117.1| ribonuclease [Pseudomonas putida F1]
 gi|148513073|gb|ABQ79933.1| RNAse E [Pseudomonas putida F1]
          Length = 1090

 Score =  303 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 223/610 (36%), Positives = 320/610 (52%), Gaps = 6/610 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL VP  MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++       EA  F++ +MP YA
Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            V   +   S   A +  +          L+    +      + N     +    +    
Sbjct: 491 EV--LNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAP 548

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+V  + S+    D+     + P+                     S
Sbjct: 549 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQS 608

Query: 694 IPPVSTPEME 703
                  + E
Sbjct: 609 RNRNGRRDEE 618



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  SERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 106


>gi|170717347|ref|YP_001784456.1| ribonuclease [Haemophilus somnus 2336]
 gi|168825476|gb|ACA30847.1| ribonuclease, Rne/Rng family [Haemophilus somnus 2336]
          Length = 942

 Score =  303 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 190/560 (33%), Positives = 299/560 (53%), Gaps = 2/560 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
           ++ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MPN  +   ISR+I
Sbjct: 84  YQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI 143

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                 + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  W+ +++ + +  
Sbjct: 144 EGDERLE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP 202

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+++E ++I RAIRD   +DI EI++   K Y +AK  +KL+ P +   V+ Y+   
Sbjct: 203 APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEV 262

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           P+F    IE Q++S  + EV LPS G ++I+ TEAL +ID+NS RSTR   IE+TAL TN
Sbjct: 263 PLFSHYQIESQIESAFRREVRLPSGGSIVIDATEALTAIDINSARSTRGGDIEETALNTN 322

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E++++DRAR+Q+  IS FG
Sbjct: 323 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRFG 382

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           LLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  L+     +    
Sbjct: 383 LLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEALKENTKQVHTIV 442

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
              +  YLLN+KR  I   E R  V I V     +    F + +    + +    + +  
Sbjct: 443 PVQIASYLLNEKRKAIHSIEKRHNVDIVVAPNEAMETPHFSVFRVREGEEINELSYNLAK 502

Query: 584 DSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
             +       +E  +            ES  +     ++ E+   + + R++ R      
Sbjct: 503 LHEMNDETYVVEDAFISRHLENSAATVESAVENAAVSLAIETPAPMPQERKQERESLLRR 562

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
                  +   +S +N  + +            +    +      E+   S         
Sbjct: 563 IIEGIKNLFADNSSKNKKNKNTRQNKNARHNRRNQDRRSSRRIRQEHEIKSDENNKLDTQ 622

Query: 703 ESSNSSSDPIVKKTRWWKRR 722
            S  +       K      +
Sbjct: 623 HSHYTERYSKHAKKGVDDPQ 642



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E+   +Q K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 VERHGFLPLKEIAREYF 78


>gi|332994877|gb|AEF04932.1| ribonuclease G [Alteromonas sp. SN2]
          Length = 488

 Score =  303 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/565 (21%), Positives = 219/565 (38%), Gaps = 80/565 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+RVV++ +  ++E+  E   K+ + GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLINVT-PSESRVVLIENGILQEIHVERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I      I       + +E + +    + + + V  G   +      
Sbjct: 60  IGLEKAAFLHASDIV-----IHNE----IAEEVSASHIQKQDIRELVRDGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S        V++V   +    E   ++   +  +QE        
Sbjct: 111 PIGTKGARLTTDITIPSRYLVFMPSVTHVGVSQRIEEEAERERL--KTLVQEFCDENGGF 168

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +++   E  G                              R++ + +  +  K  +  L 
Sbjct: 169 ILRTAAEGVGKAELQQDAAFL-------------------RRLWDKIQSRMKKRKSNVLY 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
               +   +           I+ D +   +      +  +  +   L Y  G+     + 
Sbjct: 210 EDLPLARRVLRDFVGTELDRIRIDSKLSFQELFQFTKEYVPEMNGKLEYYTGDRPIFDLH 269

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D                                                 +E +     +
Sbjct: 270 D-------------------------------------------------VENETQRALE 280

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY+II+QTEA+ +ID+N+G       +E+T   TN EA + IARQLRLR+L 
Sbjct: 281 RRVDLKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNTEATQAIARQLRLRNLG 340

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM E  + R V   L+ +  KDRA++ +   ++ GL+EM+R+R R S+    
Sbjct: 341 GMILIDFIDMIEPDHKRRVLHSLEVATSKDRAKINIHGFTSLGLIEMTRKRTRESIEHIL 400

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  CKG G +++  ++   I+R +      Y A   +V+    VV  L+ ++   + 
Sbjct: 401 CGECPVCKGRGTVKTVETICFEIMREIVRVNRAYDADKFVVYASPKVVEALMGEESHMLA 460

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E      I V          + +
Sbjct: 461 ELEVFVSKQIKVQTETLYNQDKYDV 485


>gi|255038178|ref|YP_003088799.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053]
 gi|254950934|gb|ACT95634.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053]
          Length = 520

 Score =  303 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 159/565 (28%), Positives = 267/565 (47%), Gaps = 61/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+N++LI+++   E R+ +L+D R+ E   E+  +    G+IYL  V ++   L AAFVD
Sbjct: 1   MSNELLINSTQKGE-RIALLQDKRLLEYHVETPDQSFTVGDIYLGTVRKLVAGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P+      +    L K+    +                       
Sbjct: 60  VGFEKDAFLHYLDLGPN-----INSLNKLTKDVIAKRA---------------------- 92

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                + NF  E E E +   +  +  N   +     E +  K  R              
Sbjct: 93  -HSGNLKNFKMEPEIEKLGKIDKVLSKNQPILVQIVKEPISTKGPR-------------- 137

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                          ++  +S+AGRY VL+P  S    +S+KIT+  +R  L+ +   ++
Sbjct: 138 ---------------LSCDISIAGRYIVLVPF-SNSVNLSKKITDKQERNRLQRLMSSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   GVI+RT    +   E+ +D +  +  W+N  +   ++     V  E N     IR
Sbjct: 182 -PQNFGVIIRTVAMGKDVEELNKDLQDCLDKWENGIKALKDAKPRDRVIGEMNRASSIIR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +    I V  ++ Y + K ++  + P    I+R +   + +F + G+E Q+ SL  
Sbjct: 241 DMLNESFDSITVDSKEVYDDIKAYIHNIAPEKENILRLHNGKNKLFEQFGLEKQIKSLFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V+LP+ GY+II  TEAL  IDVNSG +S  E   E TAL  NLEAA+EIARQLRLRD+
Sbjct: 301 RSVSLPNGGYLIIEHTEALHVIDVNSGNKSNSEEDQEATALSVNLEAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM++ +N R++   +++ +K DR++  V  +S FGLL+++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMKKAENKRTLFDVMRDEMKGDRSKYTVLPLSKFGLLQITRQRVRPEMNIV 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T + C  C G G I++   V+  I  +++  L +     I +  H  +  Y      +  
Sbjct: 421 TRETCPTCGGTGTIQASILVSDVIANNLDYILTKQNERGITISLHPFLHSYFTKGLISEQ 480

Query: 540 VEYEARFGVSINVVIGIELADKLFY 564
           V++   +   + ++    L    F 
Sbjct: 481 VKWFFHYKTWVKLIKDSSLGVVDFK 505


>gi|194432439|ref|ZP_03064726.1| ribonuclease E [Shigella dysenteriae 1012]
 gi|194419326|gb|EDX35408.1| ribonuclease E [Shigella dysenteriae 1012]
 gi|332092893|gb|EGI97961.1| ribonuclease E [Shigella dysenteriae 155-74]
          Length = 1058

 Score =  303 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|304312937|ref|YP_003812535.1| Ribonuclease E (RNase E) [gamma proteobacterium HdN1]
 gi|301798670|emb|CBL46902.1| Ribonuclease E (RNase E) [gamma proteobacterium HdN1]
          Length = 1015

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 221/692 (31%), Positives = 326/692 (47%), Gaps = 61/692 (8%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+    +   D E    +    ++       LE     A             A
Sbjct: 11  PEEFRVALVDGQKLYDLDIEHRTREQKKANIYKGRITRLEPSLEAAFVD--------FGA 62

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           +      ++++        PK  + +Y +++V+K  Q ++VQ+ KEERG KGAA++T++S
Sbjct: 63  DRHGFLPLKEISRDYFVRNPKDIQGRYTVKDVLKEGQEVVVQVGKEERGTKGAALSTFIS 122

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +   ISR+I        LKEI   L +P  MG+I+RTAG  R+  E+
Sbjct: 123 LAGRYLVLMPNNPRAGGISRRIDGDERSD-LKEIMNALTIPEDMGMIIRTAGMGRSAEEL 181

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D +YL++LW ++   +    AP L+Y+E N+I R IRD   +DI E+I+   + +++A
Sbjct: 182 QWDLDYLLQLWASITTASTQRQAPFLIYQESNVIIRTIRDYLRQDIGEVIIDTPEVHKDA 241

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
             F++ +MP Y   ++ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVS
Sbjct: 242 LGFVRQVMPQYESKIKLYKDTVPLFNRYQIESQIEAAFQREVKLPSGGSIVIDPTEALVS 301

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NS R+T+   IE+TAL TNLEAAEEIARQLRLRD+ GLIV+DFIDM ++KN R VE 
Sbjct: 302 IDINSSRATKGADIEETALNTNLEAAEEIARQLRLRDIGGLIVIDFIDMNQQKNQREVEH 361

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +LKE+L  DRAR+Q G IS FGL+E+SRQR+R S+ E++  VC  C G GY+R   S+AL
Sbjct: 362 RLKEALDIDRARIQTGRISRFGLMELSRQRLRPSLGETSGHVCPRCNGTGYVRDLHSLAL 421

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           SI+R +EE  ++     I      +V  YLLN+KR  I   E +    I V+    L   
Sbjct: 422 SIMRLIEEEAMKENTAEIHAQVPVNVATYLLNEKRDNIARQEKQNNARILVIPNPNLESP 481

Query: 562 LFYIEKGSPV-------------------------------QALVNTGHKVGSDSQAPSY 590
            F + +                                                   P+ 
Sbjct: 482 HFEVTRFRADQITQTTPTASYELISEIEEEEEEIVSFGIENTIKRQEAAVQMIKPTTPAP 541

Query: 591 DKNIECVWQDEALLPIPKSE-------------------SLEDIQDNIVSEESTGVIRKR 631
                    DE ++P P  E                     E         +     ++R
Sbjct: 542 QPTAAVTNNDEVVVPNPPKEAGFFARLFAWFLHLFGAGKPAEPEVPETPPAKEEAQPQQR 601

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG--FTEN 689
               R RR   +  D     D    ++  D+  +      D       +N         N
Sbjct: 602 SSGNRNRRDNRNRRDNRDNRDNRDNRDNRDNRDNRDRNAGDQRQQAKSQNRDERVEANGN 661

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              + P  S    E  ++  D    +     R
Sbjct: 662 VAPNAPDASDDSGEQQSNRQDSRGDRQGNQGR 693



 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 56/77 (72%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++   ++ +LD E   ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 2  KRMLINATHPEEFRVALVDGQKLYDLDIEHRTREQKKANIYKGRITRLEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  DY+
Sbjct: 62 ADRHGFLPLKEISRDYF 78



 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 6/150 (4%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS----EESTGVIRKRRRR- 634
                +++ + D+ +E         P    +S E   +   S    + + G   +R+ R 
Sbjct: 642 DQRQQAKSQNRDERVEANGNVAPNAPDASDDSGEQQSNRQDSRGDRQGNQGRNNRRQDRG 701

Query: 635 -RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            R R R   +  DA   +D         DS            +   +   H    N +  
Sbjct: 702 GRNRDRARNERQDAETATDSGERSEANSDSQAARQNQPRRDRNERPDRQGHSQERNQERG 761

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                    E +   S    ++      R+
Sbjct: 762 QERNQERNQERNQGRSQERNQEAGQSSDRQ 791


>gi|331646342|ref|ZP_08347445.1| ribonuclease E (RNase E) [Escherichia coli M605]
 gi|330910898|gb|EGH39408.1| ribonuclease E [Escherichia coli AA86]
 gi|331045094|gb|EGI17221.1| ribonuclease E (RNase E) [Escherichia coli M605]
          Length = 1061

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|299532488|ref|ZP_07045878.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44]
 gi|298719435|gb|EFI60402.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44]
          Length = 987

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 189/538 (35%), Positives = 292/538 (54%), Gaps = 6/538 (1%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 7   QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 66

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  I +VI+  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  FKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 127 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A  S    L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP
Sbjct: 186 LWSAIDGAAKASKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 246 EHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSVDVNSARAI 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D
Sbjct: 306 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRLRDALRQD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR++ ++ E     C  C G+G+IR   S AL ILR ++E 
Sbjct: 366 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQILRIIQEE 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     +      +V  +LLN+KR+ I + E +  V++ +V    +    + +E+   
Sbjct: 426 SMKDNTAAVHCQVPVEVASFLLNEKRSEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 485

Query: 571 VQALVNTGHKVGSDSQAPSY-----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             + + +       +  P        ++ E   +   ++     ++   I +     +
Sbjct: 486 DDSRLESMEASYKLADEPEEVTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPPRQ 543



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/107 (41%), Positives = 63/107 (58%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG +
Sbjct: 1   MLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 61  RHGFLPFKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGN 107


>gi|320179215|gb|EFW54173.1| Ribonuclease E [Shigella boydii ATCC 9905]
 gi|332089152|gb|EGI94261.1| ribonuclease E [Shigella boydii 5216-82]
          Length = 1061

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|226943599|ref|YP_002798672.1| Ribonuclease E [Azotobacter vinelandii DJ]
 gi|226718526|gb|ACO77697.1| Ribonuclease E [Azotobacter vinelandii DJ]
          Length = 1139

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 210/523 (40%), Positives = 305/523 (58%), Gaps = 4/523 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKSPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL+VPA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLDVPADMGLIVRTAGLGRSSEELQWDLDYLVQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+   P L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 191 AIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALSFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE K++E+L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDKMREALEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R  V I ++    +    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRVRIVILPSDHMETPHFEVQRLRDDSP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
            V +       + A   +  +    +           +     
Sbjct: 491 EVQSAQSSYEMTPAEVEEVQLVSSTRTLVRQEAAVKTAPPRNA 533



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 62  AERHGFLPLKEISREYFKKSPEGRINIKDVLSEGQEVIVQVEKEE 106


>gi|161524153|ref|YP_001579165.1| ribonuclease [Burkholderia multivorans ATCC 17616]
 gi|189351090|ref|YP_001946718.1| ribonuclease G [Burkholderia multivorans ATCC 17616]
 gi|221199599|ref|ZP_03572643.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2M]
 gi|221205501|ref|ZP_03578516.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2]
 gi|221211677|ref|ZP_03584656.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD1]
 gi|160341582|gb|ABX14668.1| ribonuclease, Rne/Rng family [Burkholderia multivorans ATCC 17616]
 gi|189335112|dbj|BAG44182.1| ribonuclease G [Burkholderia multivorans ATCC 17616]
 gi|221169038|gb|EEE01506.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD1]
 gi|221174339|gb|EEE06771.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2]
 gi|221180884|gb|EEE13287.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2M]
          Length = 490

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 133/566 (23%), Positives = 225/566 (39%), Gaps = 80/566 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1   MNEEILINLT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   +I  P                                           
Sbjct: 60  IGLERAAFLHVADIWQP------------------------------------------R 77

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
           +    P      +  E+++      +V  ++D  G     +  +          +     
Sbjct: 78  IAGEPPSGAAHHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPH 137

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           + +    E    + A       +  R + ++P   KG  I R I      + L      L
Sbjct: 138 IGISQKIESEAEREA-------VRARLTAVIPPDEKGGYIVRTIAEDATSEELAADVAYL 190

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                   I+  A        + +D +   R+  +        +                
Sbjct: 191 RKTW--ATIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTTRIQ--------------- 233

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
                       V   + Y+   +F     P+ +  +  Y    P+F    IE ++    
Sbjct: 234 ------------VDSRETYQRLAEFAAEFTPAVSPKLHHYTGERPLFDLYNIETEIQRAL 281

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L
Sbjct: 282 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 341

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+EM+R+R R S+   
Sbjct: 342 GGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV 401

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C+G G +++  +V   ILR +     Q+      V     V+   L+++   +
Sbjct: 402 LCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHL 461

Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565
                  G  +++ +   L+ + + I
Sbjct: 462 AMLIDFIGKPVSLQVESNLSQEQYDI 487


>gi|153827553|ref|ZP_01980220.1| ribonuclease E [Vibrio cholerae MZO-2]
 gi|149738477|gb|EDM52873.1| ribonuclease E [Vibrio cholerae MZO-2]
          Length = 957

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 204/664 (30%), Positives = 316/664 (47%), Gaps = 39/664 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------------------ESLE 613
           +      + +    +A    +  E V  +     I +                      E
Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547

Query: 614 DIQDNIVSEESTG--------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                 V + +                       +           D           + 
Sbjct: 548 PQPVAEVKQPAQSGFFSRVFKAIASLFSTTPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             +  D      +  N+   +              P     E    N  ++ P  +++  
Sbjct: 608 RRNPRDKNRRRGNEENNERNDKETSNNNRKPQERKPKQERGERNERNDRNERPETERSER 667

Query: 719 WKRR 722
             RR
Sbjct: 668 QDRR 671



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|261253418|ref|ZP_05945991.1| ribonuclease E [Vibrio orientalis CIP 102891]
 gi|260936809|gb|EEX92798.1| ribonuclease E [Vibrio orientalis CIP 102891]
          Length = 983

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 203/657 (30%), Positives = 323/657 (49%), Gaps = 31/657 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + + L+ P 
Sbjct: 188 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHISLIRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVSRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +L++S++ DR
Sbjct: 308 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFDVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVI 628
           +      + +    +A    +  E V  +     I +          Q            
Sbjct: 488 EEFDLLSYLLPQKLEAMKEAEGKEPVEVEAKPKKIEEPALKGFASPSQTAPALATPAPTA 547

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG------ 682
           +    ++ +  PA D     V     ++ + +  S +   +  +       + G      
Sbjct: 548 KPTPEKKAKSEPAQDEQPGLVSRFFKALGSFLFGSTEKEEQNKEEQKPKERKEGNRNNRN 607

Query: 683 ----------------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                               +EN +           + + + + P  +K +  K ++
Sbjct: 608 RRNRNDNRRRNNRDNRNDNRSENREDKRDNKRKNTRDEAANEAKPNERKQQNRKPKQ 664



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106



 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/174 (8%), Positives = 37/174 (21%), Gaps = 20/174 (11%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                          + +  + D   +   ++       K ++  D   N          
Sbjct: 599 KEGNRNNRNRRNRNDNRRRNNRDNRNDNRSENREDKRDNKRKNTRDEAANEAKPNERKQQ 658

Query: 629 RKRRRRRRRRRP--------------------ATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
            ++ ++ RR +                      TD  D            V +      +
Sbjct: 659 NRKPKQDRRNKRDDVKPSKVAEEGLKLAADAQQTDKPDVRKERAEEKAAKVKERRQRRKL 718

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                    + +  A    +         +  E      S +   +  +   RR
Sbjct: 719 SKQVRVKDQVNKAKADEEAKQVQSEAKAEAVEEKAVDAVSEESAEQPKQRRNRR 772



 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 31/131 (23%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E  +  +                +   +++     E  L +       D  D        
Sbjct: 645 EAANEAKPNERKQQNRKPKQDRRNKRDDVKPSKVAEEGLKLAADAQQTDKPDVRKERAEE 704

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + + RR+RR+          V    +  +     S        +     + E  A  
Sbjct: 705 KAAKVKERRQRRKLSKQVRVKDQVNKAKADEEAKQVQSEAKAEAVEEKAVDAVSEESAEQ 764

Query: 686 FTENYDVSIPP 696
             +  +   P 
Sbjct: 765 PKQRRNRRSPR 775


>gi|147674453|ref|YP_001217556.1| ribonuclease E [Vibrio cholerae O395]
 gi|146316336|gb|ABQ20875.1| ribonuclease E [Vibrio cholerae O395]
          Length = 688

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 205/641 (31%), Positives = 320/641 (49%), Gaps = 23/641 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+T ++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTAFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617
           +      + +    +A    +  E V  +     I +                + +   +
Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     +     R  +  A+        + V +      +      E +D  N  
Sbjct: 548 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + +         E+SNS+  P  +K + 
Sbjct: 608 RRNPRDKNRRRGNEENNERNDK---ETSNSNRKPQERKPKQ 645



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|153000232|ref|YP_001365913.1| ribonuclease [Shewanella baltica OS185]
 gi|151364850|gb|ABS07850.1| ribonuclease, Rne/Rng family [Shewanella baltica OS185]
          Length = 1148

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 210/650 (32%), Positives = 318/650 (48%), Gaps = 23/650 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  ++      
Sbjct: 28  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 88  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E +    AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614
               +  + +K     +A  Y+                       ++A  P  K E+ + 
Sbjct: 507 SDDEISESSYKRIEQPEAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566

Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
              + +    + +     +    +         +   ++  + +N      +        
Sbjct: 567 GFFSKLVSAISAMFAPSEKAEPVKVVETKTTDTSAANANRRNRRNDTRRPRNAQDADKAK 626

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRWWKRR 722
                  +       +  V+      P  E   +        K R    +
Sbjct: 627 EGTREPRSRNSKKPADAAVNTSAQERPVREKEETKRPARSEPKPRVQAPK 676



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 80 ADRHGFLPLKEIAREYF 96


>gi|269962048|ref|ZP_06176402.1| ribonuclease E [Vibrio harveyi 1DA3]
 gi|269833132|gb|EEZ87237.1| ribonuclease E [Vibrio harveyi 1DA3]
          Length = 1029

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 195/565 (34%), Positives = 299/565 (52%), Gaps = 8/565 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  A++ ++L+ P 
Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAREHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FISRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +    +A    +  E    D  + P    E +                  +
Sbjct: 491 EEFDLLSYLLPKKLEAMKEAEGKEPAEAD--IKPKRIEEPVLKGFAAPAQTAPAPSATSK 548

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSI 656
                +++        G+ S +   
Sbjct: 549 PAPAAKKKEVVQEEKPGLFSRLFKA 573



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109



 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 34/128 (26%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K            +    +Q P  +  +       A      SE+  +      + ++  
Sbjct: 652 KQQNRNQKRKPKAQQAEKAQEPKANAKVAEKGLQLAAEARTGSEAKPEESKAKPNAKAEK 711

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           V  +R+RR+  +        A   ++  +    I+       +P +       +      
Sbjct: 712 VKERRQRRKLNKSVRVKDQQAAEQAEQETPVQAIEAVEAPVEKPVEAAAEAQQDKAESKQ 771

Query: 687 TENYDVSI 694
             N     
Sbjct: 772 RRNRRSPR 779


>gi|262166133|ref|ZP_06033870.1| ribonuclease E [Vibrio mimicus VM223]
 gi|262025849|gb|EEY44517.1| ribonuclease E [Vibrio mimicus VM223]
          Length = 1028

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 206/639 (32%), Positives = 324/639 (50%), Gaps = 18/639 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN--IVSEESTGVIR 629
           +      +           +   E   ++   + +      E +       +E       
Sbjct: 488 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 542

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           K +   +R+         G+ S +  +I N+   + +     + +   N  E       +
Sbjct: 543 KAKAEPQRQVETVQPAQPGLFSRLFKAIANLFSPAPEAAKVEAAVAQSNEQEKPRRERND 602

Query: 689 NYDVSIPPVSTPEMESSNSSSDPI----VKKTRWWKRRK 723
                         E S+  +D       +K +  K ++
Sbjct: 603 RRRNPRDKNRRRGNEESSERNDKEGATNHRKPQDRKPKQ 641



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|303256985|ref|ZP_07342999.1| ribonuclease E [Burkholderiales bacterium 1_1_47]
 gi|302860476|gb|EFL83553.1| ribonuclease E [Burkholderiales bacterium 1_1_47]
          Length = 1033

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 205/658 (31%), Positives = 310/658 (47%), Gaps = 31/658 (4%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED---- 151
           A+    A+ +     D+ I +    +  + I        E S+ +   D           
Sbjct: 11  AEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYGEERHGFLPF 70

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   I+E +     L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I      +  +E    L  P GM +I RTAG  RT  E+K DF+YL++L
Sbjct: 131 NNPRGGGVSRRIEGEEREEL-RENMSKLPTPKGMSLIARTAGIGRTVEELKWDFDYLLQL 189

Query: 272 WDNVRELALNS------------------------VAPHLVYEEGNLIKRAIRDLYCKDI 307
           W  + E A                            AP L+ EE NL+ RAIRD +  DI
Sbjct: 190 WQAIVEAATPQYEDTEGNFVTAPVGPLGQKYERVNPAPFLIVEESNLVIRAIRDYFQPDI 249

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
           +EI+V  +  Y +AK FM  +MP     V++Y D  P+F R  IE Q+++ +   V LPS
Sbjct: 250 AEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRFQIENQIETAYSRTVPLPS 309

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            G ++I+ TEALV+IDVNS R+T    IE TA  TN EAAEE+ARQ+RLRDL GLIV+DF
Sbjct: 310 GGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEEVARQMRLRDLGGLIVIDF 369

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDME+  + R++E+++KE+++ DRARVQ+  IS FGLLE+SRQR+R S+ E +   C  C
Sbjct: 370 IDMEDPAHQRAIEQRIKEAIRHDRARVQIAKISRFGLLELSRQRLRPSLYEGSHITCPRC 429

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G G IR   S A+ +LR ++E  L+     +      DV  YLLN+KR  I + E R  
Sbjct: 430 NGIGAIRDTESSAIQVLRILQEEALKDGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHH 489

Query: 548 VSINVVIGIELADKLFYIEKGSPVQA--LVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
           + + ++    L    + IE+                  +  AP  +              
Sbjct: 490 IEVILIPNKTLETPHYQIERLRTEDQLLTEGAPSYKRVEELAPEPEAPYSRAQNVAPSTK 549

Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
             +   ++ +     + +     +  +   ++ +       A    +  + +     +  
Sbjct: 550 PRQIPVIKGLPVREDAPKHVEPAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNS 609

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              + S +              ++   +  PV+  E           VK T+   RR+
Sbjct: 610 SRGDKSSVRKERGERKNRRQERDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQ 667



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 105/741 (14%), Positives = 210/741 (28%), Gaps = 52/741 (7%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ ++D ES  ++Q K NIY   +TR+EPSL+A FVDYG
Sbjct: 2   KRMLFNATHAEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             RHGFLPF EI   Y++     R A +KE+    T+     +    G+        +  
Sbjct: 62  EERHGFLPFKEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISL 121

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK---RQYCIQEVIKNRQI 179
                           +S   +     E  +  S    PK      R   I   ++  + 
Sbjct: 122 AGRYLVLMPNNPRGGGVSRRIEGEEREELRENMSKLPTPKGMSLIARTAGIGRTVEELKW 181

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
               +++  +    AA   Y    G +    P    G+   R    P            +
Sbjct: 182 DFDYLLQLWQAIVEAATPQYEDTEGNFVT-APVGPLGQKYERVNPAP---------FLIV 231

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV-RELALNSVAPHLVYEEGNLIKRA 298
           E    +   +R          +    +   +    +   +           ++  L  R 
Sbjct: 232 EESNLVIRAIRDYFQPDIAEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRF 291

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
             +   +      V    G     D  + L+       R                +    
Sbjct: 292 QIENQIETAYSRTVPLPSGGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEE 351

Query: 359 HQTEVTLPSRGYVIINQTEALVSID-VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
              ++ L   G         L+ ID ++      +  IE           +E  R  R R
Sbjct: 352 VARQMRLRDLG--------GLIVIDFIDMEDPAHQRAIEQRI--------KEAIRHDRAR 395

Query: 418 -DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI--SNFGLLEMSRQRIRS 474
             +A +     +++  ++   S+ +    +  +      +     S   +L + ++    
Sbjct: 396 VQIAKISRFGLLELSRQRLRPSLYEGSHITCPRCNGIGAIRDTESSAIQVLRILQEEALK 455

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
               +             +  +      I       ++      +   T    +  L  +
Sbjct: 456 DGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHHIEVILIPNKTL--ETPHYQIERLRTE 513

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
               + E    +     +    E        +  +P           G   +  +     
Sbjct: 514 D-QLLTEGAPSYKRVEELAPEPE--APYSRAQNVAPSTKPRQIPVIKGLPVREDAPKHVE 570

Query: 595 ECVWQDEALLPIP------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
                 E                   SE+ E  +    S        ++ R  R+ R   
Sbjct: 571 PAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNSSRGDKSSVRKERGERKNRRQE 630

Query: 643 DHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                   + V+  + V         ++P+   +    E                  T +
Sbjct: 631 RDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQKETVEKAKNVPAVRPAAVEKTEK 690

Query: 702 MESSNSSSDPIVKKTRWWKRR 722
            E    +   + + +    +R
Sbjct: 691 PERIERTRKALKENSALQDKR 711


>gi|152988059|ref|YP_001347557.1| ribonuclease E [Pseudomonas aeruginosa PA7]
 gi|150963217|gb|ABR85242.1| ribonuclease E (RNase E) [Pseudomonas aeruginosa PA7]
          Length = 1073

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 218/620 (35%), Positives = 317/620 (51%), Gaps = 19/620 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 27  EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 86

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 87  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 146

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 147 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 205

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 206 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 265

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 266 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 325

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 326 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 385

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 386 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 445

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 446 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 505

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    ++ + V     L+    +      Q      +      K   
Sbjct: 506 EL--VAGQTSYEMATVEHEDAQPVSSTRTLVRQEAAVKTVAPQQPAPQAQEPVEAPKPMP 563

Query: 634 RRR-------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                             +       A      +  Q+  D+  +   +       +   
Sbjct: 564 EPSLFQGLVKSLVGLFAGKEQPAAKPAESAKPAAERQSRQDERRNGRQQNRRRDGRDGNR 623

Query: 681 NGAHGFTENYDVSIPPVSTP 700
                          P    
Sbjct: 624 RDEERKPREERAERQPREER 643



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 17  KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 76

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 77  AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 121


>gi|330999174|ref|ZP_08322893.1| S1 RNA binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329575374|gb|EGG56918.1| S1 RNA binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 1033

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 205/658 (31%), Positives = 310/658 (47%), Gaps = 31/658 (4%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED---- 151
           A+    A+ +     D+ I +    +  + I        E S+ +   D           
Sbjct: 11  AEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYGEERHGFLPF 70

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +            R   I+E +     L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 71  KEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +G  +SR+I      +  +E    L  P GM +I RTAG  RT  E+K DF+YL++L
Sbjct: 131 NNPRGGGVSRRIEGEEREEL-RENMSKLPTPKGMSLIARTAGIGRTVEELKWDFDYLLQL 189

Query: 272 WDNVRELALNS------------------------VAPHLVYEEGNLIKRAIRDLYCKDI 307
           W  + E A                            AP L+ EE NL+ RAIRD +  DI
Sbjct: 190 WQAIVEAATPQYEDTEGNFVTAPIGPLGQKYERVNPAPFLIVEESNLVIRAIRDYFQPDI 249

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
           +EI+V  +  Y +AK FM  +MP     V++Y D  P+F R  IE Q+++ +   V LPS
Sbjct: 250 AEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRFQIENQIETAYSRTVPLPS 309

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            G ++I+ TEALV+IDVNS R+T    IE TA  TN EAAEE+ARQ+RLRDL GLIV+DF
Sbjct: 310 GGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEEVARQMRLRDLGGLIVIDF 369

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDME+  + R++E+++KE+++ DRARVQ+  IS FGLLE+SRQR+R S+ E +   C  C
Sbjct: 370 IDMEDPAHQRAIEQRIKEAIRHDRARVQIAKISRFGLLELSRQRLRPSLYEGSHITCPRC 429

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G G IR   S A+ +LR ++E  L+     +      DV  YLLN+KR  I + E R  
Sbjct: 430 NGIGAIRDTESSAIQVLRILQEEALKDGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHH 489

Query: 548 VSINVVIGIELADKLFYIEKGSPVQA--LVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
           + + ++    L    + IE+                  +  AP  +              
Sbjct: 490 IEVILIPNKTLETPHYQIERLRTEDQLLTEGAPSYKRVEELAPEPEAPYSRAQNVAPSTK 549

Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
             +   ++ +     + +     +  +   ++ +       A    +  + +     +  
Sbjct: 550 PRQIPVIKGLPVREDAPKHVEPAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNS 609

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              + S +              ++   +  PV+  E           VK T+   RR+
Sbjct: 610 SRGDKSSVRKERGERKNRRQERDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQ 667



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 104/741 (14%), Positives = 209/741 (28%), Gaps = 52/741 (7%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   ++ ++D ES  ++Q K NIY   +TR+EPSL+A FVDYG
Sbjct: 2   KRMLFNATHAEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             RHGFLPF EI   Y++     R A +KE+    T+     +    G+        +  
Sbjct: 62  EERHGFLPFKEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISL 121

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK---RQYCIQEVIKNRQI 179
                           +S   +     E  +  S    PK      R   I   ++  + 
Sbjct: 122 AGRYLVLMPNNPRGGGVSRRIEGEEREELRENMSKLPTPKGMSLIARTAGIGRTVEELKW 181

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
               +++  +    AA   Y    G +    P    G+   R    P            +
Sbjct: 182 DFDYLLQLWQAIVEAATPQYEDTEGNFVT-APIGPLGQKYERVNPAP---------FLIV 231

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV-RELALNSVAPHLVYEEGNLIKRA 298
           E    +   +R          +    +   +    +   +           ++  L  R 
Sbjct: 232 EESNLVIRAIRDYFQPDIAEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRF 291

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
             +   +      V    G     D  + L+       R                +    
Sbjct: 292 QIENQIETAYSRTVPLPSGGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEE 351

Query: 359 HQTEVTLPSRGYVIINQTEALVSID-VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
              ++ L   G         L+ ID ++      +  IE           +E  R  R R
Sbjct: 352 VARQMRLRDLG--------GLIVIDFIDMEDPAHQRAIEQRI--------KEAIRHDRAR 395

Query: 418 -DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI--SNFGLLEMSRQRIRS 474
             +A +     +++  ++   S+ +    +  +      +     S   +L + ++    
Sbjct: 396 VQIAKISRFGLLELSRQRLRPSLYEGSHITCPRCNGIGAIRDTESSAIQVLRILQEEALK 455

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
               +             +  +      I       ++      +   T    +  L  +
Sbjct: 456 DGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHHIEVILIPNKTL--ETPHYQIERLRTE 513

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
               + E    +     +             +  +P           G   +  +     
Sbjct: 514 D-QLLTEGAPSYKRVEELAPEP--EAPYSRAQNVAPSTKPRQIPVIKGLPVREDAPKHVE 570

Query: 595 ECVWQDEALLPIP------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
                 E                   SE+ E  +    S        ++ R  R+ R   
Sbjct: 571 PAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNSSRGDKSSVRKERGERKNRRQE 630

Query: 643 DHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                   + V+  + V         ++P+   +    E                  T +
Sbjct: 631 RDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQKETVEKAKNVPAVRPAAVEKTEK 690

Query: 702 MESSNSSSDPIVKKTRWWKRR 722
            E    +   + + +    +R
Sbjct: 691 PERIERTRKALKENSALQDKR 711


>gi|268589207|ref|ZP_06123428.1| ribonuclease E [Providencia rettgeri DSM 1131]
 gi|291315464|gb|EFE55917.1| ribonuclease E [Providencia rettgeri DSM 1131]
          Length = 1092

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 195/553 (35%), Positives = 305/553 (55%), Gaps = 8/553 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71

Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
             + E  P  +    +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   +++D  Y +R 
Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAESLQQDLLYRLRH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330
           W+ +++ A N  AP L+++E N+I RA RD    DI EI++   K    A++ ++ +   
Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIEAIGRG 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 251 DFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LS+LR +EE 
Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSVLRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  + + E R   V + +V   ++    F++ +  
Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVSDIEQRQSHVRVVIVPNDQMQTPHFHVIRIR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + +    + +    +  +  ++ E   + +       S        ++ + +      
Sbjct: 491 KGEEVNTLSYNLAQYHETVTLTQSDETTAERKIPEQPAISAFALQEPVDMSTVKPKETAT 550

Query: 630 KRRRRRRRRRPAT 642
           K   +     PA+
Sbjct: 551 KAPVKSVATEPAS 563



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|262404384|ref|ZP_06080939.1| ribonuclease E [Vibrio sp. RC586]
 gi|262349416|gb|EEY98554.1| ribonuclease E [Vibrio sp. RC586]
          Length = 1024

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 191/518 (36%), Positives = 291/518 (56%), Gaps = 6/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           +      + +    +A    +  E +  D     I + 
Sbjct: 488 EEQDILSYLIPKKLEAMKEAEGKEVLDVDLKPKRIEEP 525



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|312882471|ref|ZP_07742212.1| ribonuclease E [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369871|gb|EFP97382.1| ribonuclease E [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 997

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 183/588 (31%), Positives = 297/588 (50%), Gaps = 20/588 (3%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                    ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMPN  
Sbjct: 75  KEYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNP 134

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +   ISR+I      + LK     LE+P  MG+I+RTAG  ++  E++ D   L+  W  
Sbjct: 135 RAGGISRRIEGDERTQ-LKAALNTLELPQEMGLIVRTAGVGKSAEELEWDLNVLLNHWGA 193

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +++ + ++ AP L+++E N+I RAIRD   +DI EII+     +  A + ++L+ P +  
Sbjct: 194 IKQASDSNTAPFLIHQESNVIVRAIRDYLRRDIGEIIIDSTTIHERALNHIRLVRPDFES 253

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V +++   P+F +  IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+   
Sbjct: 254 RVHKHDGEVPLFSKYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGD 313

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +L++S++ DRARV
Sbjct: 314 IEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRLDRARV 373

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           Q+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  L+ 
Sbjct: 374 QIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEALKD 433

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
               ++      +  YLLN+KR ++   E    V I VV   ++    F + +    +  
Sbjct: 434 NTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFDVIRVREGEEF 493

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIRKR 631
               + + +  +A    ++ E    +     I +          Q             ++
Sbjct: 494 DLLSYLLPNKIEALKEAESKEPSEIEAKPRKIEEPALKGFAAPNQSAPSPTNKPAKGTQK 553

Query: 632 RRRRRRRRPAT----------------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             ++  ++                      +     D    +       +      +   
Sbjct: 554 AAQKALQQEQKPGLIGRFLKALGGFLFGSDEKKNKQDSQQKERKEGQRNNRNRRNRNDNR 613

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +         +      +  +   ++S      +K +  K ++
Sbjct: 614 RRNNRDNRDNRDNRDNRDNRDDARRKAAKNDSQEKQNERKQQNRKPKQ 661



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  ALRHGFLPLKEIAKEYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109


>gi|315126330|ref|YP_004068333.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
           member of the degradosome; involved in the production of
           [Pseudoalteromonas sp. SM9913]
 gi|315014844|gb|ADT68182.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
           member of the degradosome; involved in the production of
           [Pseudoalteromonas sp. SM9913]
          Length = 999

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 193/618 (31%), Positives = 306/618 (49%), Gaps = 53/618 (8%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
                 F  +  I++VIK  Q ++VQ+ KEERG KGAA+TT++S+AG Y VLMPN  +  
Sbjct: 78  FPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAG 137

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
            ISR+I      + LKE    LE+P GMG+I+RTAG  ++  E+  D + L+  W+ +++
Sbjct: 138 GISRRIEGDERTE-LKESLSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQ 196

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
            A ++ AP L+++E N+I RAIRD   +DI EI++   + + EAK  ++   P +   V+
Sbjct: 197 AADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVK 256

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
            Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS ++T+   IE+
Sbjct: 257 LYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATKGGDIEE 316

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +LK++ + DRARVQ+G
Sbjct: 317 TALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIG 376

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
            IS FGLLEMSRQR+R S+ E++  VC  C G G IRS  S+ALSILR +EE  ++    
Sbjct: 377 KISRFGLLEMSRQRLRPSLGEASQGVCPRCSGQGTIRSNESIALSILRLIEEEAIKDNTA 436

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
            +       V  YLLN++R ++   E      + ++    +    + + +    + L   
Sbjct: 437 QVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETPHYEVMRLRKDETLETV 496

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL------------------------- 612
            ++     +  +++ +            +                               
Sbjct: 497 SYEQVVAPEPEAFEMSKSPAAPVREEPKLKGVVMPSTPAPQAAAKAAPVVEAKAEIGLFA 556

Query: 613 ------------EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                       +  Q +    E     R    R    R   ++      +  +  +N  
Sbjct: 557 ALGKWIKSLFGSDTEQKSEKQTEKQSQDRPSNNRGNDNRRRNNNQRRRNNNPRNKPRNER 616

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME---------------SS 705
               +   E + + +        +    N +    P    E +                S
Sbjct: 617 TADAEAKNESAPVNDTQEKNENRNKRRRNSNTRKRPEHKTEDKTQVKAEATQNADTVVKS 676

Query: 706 NSSSDPIVKKTRWWKRRK 723
           + +++P  +K +  ++R+
Sbjct: 677 DKNAEPKEQKPKVRRQRR 694



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI   Y+
Sbjct: 62 ADRHGFLPLKEIARTYF 78


>gi|238897580|ref|YP_002923259.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465337|gb|ACQ67111.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 951

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 199/631 (31%), Positives = 312/631 (49%), Gaps = 9/631 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS------N 148
             +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       
Sbjct: 10  QHEELRVALVDGQKLYDLDIESLGYEQKKANIYKGKITRIEPSLEAAFVDYGSARQGFLP 69

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           ++++              +  I++V+   Q L+VQI KEERG KGAA+TT++SLAG Y V
Sbjct: 70  LKEISPEYFSPNYSNHGARPNIKDVLSESQELIVQIDKEERGTKGAALTTFISLAGSYLV 129

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           LMPN      ISR+I      + LK+    LE+P GMG+I+RTAG  ++   ++ D    
Sbjct: 130 LMPNNPGAGGISRRIEGDDRAE-LKKAMASLELPEGMGLIVRTAGLGKSSEALQWDLSLR 188

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-L 327
           ++ WD ++++A N  AP L+++E N++ RA RD    DISEI++   K    AKD +  L
Sbjct: 189 LKHWDAIKKIAENRKAPFLIHQESNVVVRAFRDYLRPDISEILIDNPKVLELAKDHITAL 248

Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
             P ++  ++ Y     +F    IE Q++S  + EV L S G ++I+ +EAL++ID+NS 
Sbjct: 249 GRPDFSNKIKLYTGEVSLFSHYQIESQIESAFKREVRLLSGGSIVIDTSEALIAIDINSA 308

Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
           R+T    IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L+E+L
Sbjct: 309 RATSGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPIRHQREVENRLREAL 368

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
           ++DRAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S+ALSILR +
Sbjct: 369 RQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLALSILRLI 428

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIE 566
           EE  L+   H +      +V  YLLN+KR  +   E R  GV   +V   ++    + + 
Sbjct: 429 EEEALKENTHEVHAIVPVEVASYLLNEKRDAVNAIEKRQEGVRAVIVPNAQMQTPHYTVL 488

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +  +   + +    +        +     +       S     I+   +S ++  
Sbjct: 489 RVRKGEESLTLSYMLPQRYETEMPQTQDDPSNGRKHCEEPALSSLSFPIKSTDISNKNGA 548

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                 R  R            ++  +   +    +S +   +P +    N   +     
Sbjct: 549 HGLNNARPERSFFQTLITVIQRLLGWIKKKETHGLESKNTAAQPQENAYVNRKTDTRKER 608

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           +          +      + +      K  R
Sbjct: 609 SPREPREDLGRNKLSRSQTATRDKTKNKNNR 639



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQHEELRVALVDGQKLYDLDIESLGYEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            R GFLP  EI P+Y+
Sbjct: 62 SARQGFLPLKEISPEYF 78


>gi|255321252|ref|ZP_05362418.1| ribonuclease E [Acinetobacter radioresistens SK82]
 gi|262380062|ref|ZP_06073217.1| ribonuclease E [Acinetobacter radioresistens SH164]
 gi|255301806|gb|EET81057.1| ribonuclease E [Acinetobacter radioresistens SK82]
 gi|262298256|gb|EEY86170.1| ribonuclease E [Acinetobacter radioresistens SH164]
          Length = 1170

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 198/552 (35%), Positives = 298/552 (53%), Gaps = 12/552 (2%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFKADSRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKE+   L+VP GM VI+RTAG  R++ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGAVREE-LKEMLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D+SEI++  E+ Y EA +F+K +MP  
Sbjct: 190 TQIQSTANSGPSPMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GLIV+DFIDM   +N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALSTNLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
                 + V    ++  ++LN+KR ++V  E      + V+    L    + I       
Sbjct: 430 HERQGEVQVEVPVEIAAFMLNEKRHSLVYLEQTSNTRVTVLPHPHLETPHYEISYNPEGF 489

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A  +      + S   +          +EA      +             +      + +
Sbjct: 490 APTSYERTEATRSSEKNLGYESADWHLEEAEQVGQST-----AAPTDKPGKPQNRKTQPQ 544

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAHGF 686
               ++            S  + ++N                  +      ++  GA   
Sbjct: 545 AAAPQQPAQVPAAKTATSSPCAWLENLFVQKQAHTVDHSRTANNAAAAIEQMVNTGAVSR 604

Query: 687 TENYDVSIPPVS 698
            +   ++   V+
Sbjct: 605 GQFGQINNAAVA 616



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 53/78 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  +R+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALVTGHRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           NR GFL   EI   Y++
Sbjct: 62 ANRQGFLSMREIANSYFK 79


>gi|170768072|ref|ZP_02902525.1| ribonuclease E [Escherichia albertii TW07627]
 gi|170122838|gb|EDS91769.1| ribonuclease E [Escherichia albertii TW07627]
          Length = 1069

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 187/518 (36%), Positives = 286/518 (55%), Gaps = 9/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606
             +      + +     +A +     E   +     P 
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPA 528



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|262170982|ref|ZP_06038660.1| ribonuclease E [Vibrio mimicus MB-451]
 gi|261892058|gb|EEY38044.1| ribonuclease E [Vibrio mimicus MB-451]
          Length = 1034

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 198/642 (30%), Positives = 314/642 (48%), Gaps = 26/642 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      +           +   E   ++   + +      E +     +          
Sbjct: 488 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 542

Query: 632 RRRRRRRRPATDHHDAG---------------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           + +   ++       A                  +  ++         +   +P    N 
Sbjct: 543 KAKAETQQQVETAQPAQPGLFSRLFKAIANLFSPAPEAAKAEAAVVQSNEQEKPRRERNE 602

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                           +       + E + ++  P  +K + 
Sbjct: 603 RNDRRRNPRDKNRRRGNEENSERNDKEGATNNRKPQDRKPKQ 644



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|330878260|gb|EGH12409.1| ribonuclease E [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 1109

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598
                                                     + + AP   +        
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 547

Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                                  +    +  +   +   +   +        +++ R R 
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 607

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
            R   +       +                 E         +        E+      P 
Sbjct: 608 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 667

Query: 698 STPEMESSNSSSDPIV 713
            T        + +   
Sbjct: 668 RTSRERKPREAREDRP 683



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|257454041|ref|ZP_05619315.1| ribonuclease E [Enhydrobacter aerosaccus SK60]
 gi|257448519|gb|EEV23488.1| ribonuclease E [Enhydrobacter aerosaccus SK60]
          Length = 1266

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 201/614 (32%), Positives = 312/614 (50%), Gaps = 44/614 (7%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           ++  +PE +    +    I+++IK    L+VQ+ KEERGNKGAA++T +SLAGRY VLMP
Sbjct: 70  IREIAPEYLAGDPRSTTNIKQLIKEGDELIVQVEKEERGNKGAALSTLISLAGRYLVLMP 129

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N ++G  ISR+I+  +  +  K+    L +P GM VI+RTAG  +T  E+++D ++L+ +
Sbjct: 130 NNARGGGISRQISGKLRDEM-KQALSELRLPKGMSVIIRTAGIGKTTDELQQDLDHLLNI 188

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ +    +P L+++E  ++ RA+RD    DI+EI V  E  Y EA +F++ +MP 
Sbjct: 189 WKGIQQQSQKFPSPRLLHQEAGVVTRAVRDYLRDDITEIWVDNEYAYNEAANFIEAVMPQ 248

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            A  +R+Y D  P+F R GIE Q+++ +Q EV LPS G ++I+QTEALVSID+NS ++T+
Sbjct: 249 QANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDINSSKATK 308

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              + +TA  TNLEAA+EIARQLRLRD+ GLIV+DFIDM    + + VE +LKE+ K DR
Sbjct: 309 GADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQVENRLKEATKNDR 368

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q   IS FGLLEMSRQR+R S+ E+T  +C  C G G IR   S+ALSI+R +E+  
Sbjct: 369 ARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRSLALSIMRQIEQRA 428

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           LQ     +     +D+  +LLN+KR T+V  E   G  I ++    L    F I   S  
Sbjct: 429 LQERHGEVQAEVPTDIAAFLLNEKRETLVCLEQESGTRITILPHAHLESPEFNITYNSDG 488

Query: 572 QALVNTGHKVGSDSQAPSYD--------KNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            A  +      S  Q              +   V +           +  +  +   S  
Sbjct: 489 FAPSSYERVAESQQQEYKDRGYDTSNWHTDDNEVSRVAPTGNHNAWSNASNAANTTPSPA 548

Query: 624 STGVIRKRRRR---------RRRRRPATDHHDAGVVSDVSS---IQNVIDDSFDMYMEPS 671
           +     ++             +  +P         V+ +S+          +     + +
Sbjct: 549 TPSNKPQQTANNTTAAKAAVPQPVQPTATVPATSAVAWLSNLFAPTQQAQVTPHFSGQDA 608

Query: 672 DITNHNLLENGAHG-----------------------FTENYDVSIPPVSTPEMESSNSS 708
                +L+  GA                            + +        P   + +S 
Sbjct: 609 ASAIESLVNTGAQSLGVQGQINHAALTASIPAVSANTSETSANPYQEASQQPSATAESSD 668

Query: 709 SDPIVKKTRWWKRR 722
            D   +K    K +
Sbjct: 669 KDAERRKRGNRKPK 682



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 51/76 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV +   N + + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SQRQGFLPIREIAPEY 77


>gi|325981764|ref|YP_004294166.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
 gi|325531283|gb|ADZ26004.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
          Length = 837

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 196/476 (41%), Positives = 287/476 (60%), Gaps = 2/476 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  +P    +       IQ++++  Q L+VQ+ K+ERG KGAA+TTY+SLAGRY VL+PN
Sbjct: 71  KEIAPSCFSESGTPNARIQDLLQEGQELIVQVDKDERGTKGAALTTYISLAGRYLVLIPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S    +SR+IT      +L+E+   LE+P GM +I RTAG  R+K E++ D  YL +LW
Sbjct: 131 NSNSGGVSRRITGEER-NDLREVIAKLEIPTGMSIIARTAGIGRSKEELQWDLNYLTQLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E A N     L+Y+E +L+ RAIRD + ++I EI++     Y +A  FM  +MP+ 
Sbjct: 190 YAIEEAANNQDGVFLIYQESSLVIRAIRDYFSQEIGEILIDSRDIYEQASQFMAHVMPAN 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y D  P+F R  IE Q+++ +  +V+LPS G ++I+ TEALVS+DVNS R+ R 
Sbjct: 250 VDRLKFYHDDVPLFSRFQIEHQIETAYSRQVSLPSGGAIVIDHTEALVSVDVNSARAIRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM+ ++N R VE +L E+L++DRA
Sbjct: 310 LDIEHTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMDVQRNQREVEARLHEALRQDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+QVG IS FGLLE+SRQR+R S+ ES    CT C+G G+IR   S AL ILR ++E  +
Sbjct: 370 RIQVGKISRFGLLELSRQRLRPSLGESNYIPCTRCQGTGFIRGTDSSALHILRIIQEEAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +   + + V    DV  +LLN+KRA I + E R  ++I ++  I +    + I +     
Sbjct: 430 KENTNTLHVQLPVDVATFLLNEKRAEIYDIEMRQRINIVLIPNIHIETPNYSINRLRQED 489

Query: 573 ALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
              N         +  + D N +    +++   P    + +       V E+ +  
Sbjct: 490 LRSNEAVASYKLVEKNTEDNNLVFSEQKNKPTRPQAAVQGITPTLPAPVREDKSRD 545



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 61/105 (58%), Gaps = 3/105 (2%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+  EE RV ++    + +LD ES  K+Q K NIY A +TRVEPSL+AAFVDYG
Sbjct: 2   KRMLFNATQPEELRVAIVNGQTLIDLDIESVSKEQRKSNIYKAVITRVEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQ---IPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLPF EI P  +     P +  Q LL+E        +   
Sbjct: 62  CERHGFLPFKEIAPSCFSESGTPNARIQDLLQEGQELIVQVDKDE 106


>gi|332529425|ref|ZP_08405384.1| ribonuclease E [Hylemonella gracilis ATCC 19624]
 gi|332041071|gb|EGI77438.1| ribonuclease E [Hylemonella gracilis ATCC 19624]
          Length = 952

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 192/517 (37%), Positives = 287/517 (55%), Gaps = 1/517 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  IQ+VIK  Q LLVQ+ KEERGNKGAA+T+++SLAGRY VLM
Sbjct: 70  FKEISRQYFAAGVSPSQAKIQDVIKEGQELLVQVEKEERGNKGAALTSFVSLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEALDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ +   +  S    L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP
Sbjct: 189 LWEAIDAASKASKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDVYEQAQQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHAARVKRYRDNAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRREVENRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR+R ++ E  +  C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +     + V    DV  +LLN+KR  I + E +  +++ +V    L    + +E+   
Sbjct: 429 SQKDNTAAVHVQVPVDVASFLLNEKRNEITKIELKQRLNVLMVPNKSLETPNYKLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
               ++      + ++       I    Q+      P
Sbjct: 489 DDPRLDRVEASYAMAEEIEDPTAITRRSQEPTNKQTP 525



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA +++      +     +    G+
Sbjct: 62  EDRHGFLPFKEISRQYFAAGVSPSQAKIQDVIKEGQELLVQVEKEERGN 110


>gi|254491406|ref|ZP_05104585.1| ribonuclease, Rne/Rng family protein [Methylophaga thiooxidans
           DMS010]
 gi|224462884|gb|EEF79154.1| ribonuclease, Rne/Rng family protein [Methylophaga thiooxydans
           DMS010]
          Length = 810

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 209/563 (37%), Positives = 298/563 (52%), Gaps = 8/563 (1%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
              +       ++ +Q+V+   Q L+VQI KEERGNKGAA+TT++SLAGRY VLMPN+ +
Sbjct: 79  KKRENGDDSSGRFNVQDVLSVGQELVVQIEKEERGNKGAALTTFISLAGRYLVLMPNSPR 138

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
              ISR+I      + L++  R LEVP GMG+I+RTAG  +   E++ D EYL++LW  +
Sbjct: 139 AGGISRRIEGDDRAE-LQDALRQLEVPEGMGMIVRTAGVGKQTEELQWDLEYLVQLWTAI 197

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
                +  AP LVY+E N+I RA+RD   KDI EI+V   + Y+   DFM+++MP     
Sbjct: 198 DVATKDRSAPFLVYQESNIIIRALRDYLRKDIGEILVDSPEVYQTGYDFMRMVMPHELSK 257

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
            + Y+D  P+F R  +E Q++S  + EV LPS G ++I+ TEAL+SIDVNS R+ +   I
Sbjct: 258 FKLYQDKVPLFTRYQVESQIESAFRHEVRLPSGGALVIDPTEALISIDVNSARANKGGDI 317

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           E+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   +N R VE +L+E LK DRARVQ
Sbjct: 318 EETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMGPSRNQREVENRLREHLKADRARVQ 377

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           VG IS FGLLEMSRQR+R ++ E+  ++C  C G G++R   S+ L++LR VEE   +  
Sbjct: 378 VGRISRFGLLEMSRQRLRPALGEAHQEICPRCAGLGHVRGVESLGLAVLRLVEEEATKDR 437

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
              ++V     V  ++LN KR  +   E R  V I ++    L    + IE+        
Sbjct: 438 ITQLVVQLPVPVATFILNDKRMQVEAVEQRHSVKIVLIPNPHLDTPHYEIERIKDGNVKS 497

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-- 633
              H++ S     S D+    V +D+ +L  P    +       V  +      K+    
Sbjct: 498 EVSHQMIS-----SPDQETPVVLRDKPVLEQPAVTGISPAAPAPVVNKREQEQEKKPSLL 552

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           +R          +   +    + Q    D+             N          E     
Sbjct: 553 KRLMNVLTGKAEEEETIETPKTEQKSEQDTTKRSQNRRSRGGRNNNGGNNSNNAERRKPR 612

Query: 694 IPPVSTPEMESSNSSSDPIVKKT 716
                 PE   +     P     
Sbjct: 613 RRNEKAPETAEAEEKQQPATPNK 635



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 55/78 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV ++   R+ +LD ++  ++Q KGNIY  K+TRVEPSL+A FV+YG
Sbjct: 2  KRILINATHEEELRVAMVDGQRLFDLDIDTPSREQKKGNIYKGKITRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFLP  EI   Y++
Sbjct: 62 AERQGFLPLKEISKSYFK 79


>gi|148244555|ref|YP_001219249.1| hypothetical protein COSY_0406 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326382|dbj|BAF61525.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 573

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 159/633 (25%), Positives = 283/633 (44%), Gaps = 82/633 (12%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI+A+H EE RV ++++ ++  L+ E+   K+ KGNIY  K++R+E SL+AAFVDYG  
Sbjct: 4   ILINATHSEEIRVGIIKNKKLTGLNIETSLNKKTKGNIYRGKISRIEQSLEAAFVDYGKE 63

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           + GFLPF EI    Y    ++ + L             ++D +  G   I      E   
Sbjct: 64  KQGFLPFKEIAETLYNNTKTEGEKL------------TISDVLKEGQKIIVQIEKEERGN 111

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
             A  S                                     Y I      +   + + 
Sbjct: 112 KGAALST-----------------------------YINLAGAYMILMPNNPKSHGISRQ 142

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           +          +   + L     +++     G++            +L +    + +  G
Sbjct: 143 IVSSDRQSLKEIINRIILPKHSGLIIRTAGSGKSFEELQWEVDYLTDLWKSINTMALAHG 202

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304
              ++                                            +I R +RD   
Sbjct: 203 APFLIYQESD---------------------------------------IIIRTLRDHLR 223

Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE-DPHPIFFRSGIEVQLDSLHQTEV 363
            D   +I+   + ++ AK+F+  ++P Y   ++ ++   H +F   GIE Q+ S+   EV
Sbjct: 224 SDTDSVIIDELEAFQNAKEFVSFVLPHYLDRIKFFDVSEHSLFSHMGIETQVKSVFNREV 283

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
           +L +   ++ + TEAL SID+NS R+T+   I++TA  TNLEAA+EIA QL+LRD+ GLI
Sbjct: 284 SLRTGATIVFDPTEALTSIDINSARATKGADIKETAYNTNLEAAKEIAIQLQLRDIGGLI 343

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDM  +++  S+EK +++++  DRAR+Q+G IS FGLLEMSRQR+ +SV ES  K 
Sbjct: 344 VIDFIDMASEEHRVSIEKAMEKAISLDRARIQIGTISQFGLLEMSRQRLMNSVTESVEKP 403

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEY 542
           CT C G G   +  ++AL+ILR +E           + + +  +V+ Y+LN+KR  +++ 
Sbjct: 404 CTICHGRGTTPTIPTLALTILRQLENSCNAAKQTARLTIQSSIEVITYILNEKRQEVIKL 463

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E +  + I ++    +    F I K    +   +  ++  S  Q    +  +    +  A
Sbjct: 464 EDKHSIKITLLPNPYMQFPNFTINKQKWGKKSQHKSYQGISKPQHILVENGLANQAEIPA 523

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
           +     +  + + +  +  +    +  K++++ 
Sbjct: 524 INVNRPNTRVPEKKIFLFEKIKNTLFGKKKKQP 556


>gi|258621207|ref|ZP_05716241.1| ribonuclease E [Vibrio mimicus VM573]
 gi|258586595|gb|EEW11310.1| ribonuclease E [Vibrio mimicus VM573]
          Length = 819

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 198/642 (30%), Positives = 314/642 (48%), Gaps = 26/642 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      +           +   E   ++   + +      E +     +          
Sbjct: 491 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 545

Query: 632 RRRRRRRRPATDHHDAG---------------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           + +   ++       A                  +  ++         +   +P    N 
Sbjct: 546 KAKAETQQQVETAQPAQPGLFSRLFKAIANLFSPAPEAAKAEAAVVQSNEQEKPRRERNE 605

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                           +       + E + ++  P  +K + 
Sbjct: 606 RNDRRRNPRDKNRRRGNEESSERNDKEGATNNRKPQDRKPKQ 647



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|261209962|ref|ZP_05924261.1| ribonuclease E [Vibrio sp. RC341]
 gi|260840908|gb|EEX67445.1| ribonuclease E [Vibrio sp. RC341]
          Length = 1030

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 191/518 (36%), Positives = 291/518 (56%), Gaps = 6/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G IR   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           +      + +    +A    +  E +  D     I + 
Sbjct: 488 EEQDILSYLIPKKLEAMKEAEGKEVLDVDLKPKRIEEP 525



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|315634771|ref|ZP_07890053.1| ribonuclease E [Aggregatibacter segnis ATCC 33393]
 gi|315476323|gb|EFU67073.1| ribonuclease E [Aggregatibacter segnis ATCC 33393]
          Length = 949

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 197/660 (29%), Positives = 323/660 (48%), Gaps = 34/660 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+++I   Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP
Sbjct: 69  EIAREYFPADYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 129 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K Y +AK  +KL+ P 
Sbjct: 188 WEAIKQASESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDINSARSTR 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE ++++++++DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C+G G IR   S++LSILR +EE  
Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     +       +  YLLN+KR  I   E R  V I VV    +    F + +    
Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHDVDIIVVPNEAMETPNFSVFRVRDG 487

Query: 572 QALVNTGHKVGS---------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           + +    + +            ++     +NIE    +   +          +      E
Sbjct: 488 EEVNELSYNLAKLHQDQDETFAAEESLVSRNIEATPAETPAVESAAVSLAITMPAPEPVE 547

Query: 623 ES-------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                                    ++  + ++ R    + ++    +        + + 
Sbjct: 548 RKVPKAPSLLSRLFAALKGLFASEPKQEEKNKKSRSNNRNGNNRNRRNQDRRNNRRVRNE 607

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +      + + + N         +     +       S++       +    ++R+
Sbjct: 608 NVENIIEEQSADKSEVRNRHQDRNAKRNRKPEVIEEIIKPESSTPVTEEKAEPAQRRQRR 667



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG  
Sbjct: 1  MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEIAREYF 75


>gi|326795263|ref|YP_004313083.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1]
 gi|326546027|gb|ADZ91247.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1]
          Length = 1095

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 216/632 (34%), Positives = 318/632 (50%), Gaps = 14/632 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +          +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 72  EISKTYFSKKSNSDGRLNIKDVLTEGQEVIVQVDKEERGNKGAALTTFVSLAGRYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE   GL  P   G+I+RTAG  R+  E++ D +YL  L
Sbjct: 132 NNPRAGGISRRIDGDDRTQ-LKEAMSGLSTPENGGLIVRTAGVGRSTEELQWDLDYLDTL 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W ++ + A    AP L+Y+E N++ RAIRD    DI E+++  +  Y++A +F+  +MP 
Sbjct: 191 WSSITKAASEKPAPFLIYQESNIVIRAIRDYLRDDIGEVLIDEKGAYQDAINFVMQVMPQ 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   ++QY D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+
Sbjct: 251 FKSRIKQYSDTTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM   KN + VE ++K++L+ DR
Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPLKNQKEVENRMKQALEADR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ E++  VC  C G G+IR   S+ALS+LR +EE  
Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLALSVLRLIEEEC 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            +     I       V  +LLN+KR  I + E R  V I +V    +    F +E+    
Sbjct: 431 AKERTAQIRAILPVSVATFLLNEKRTNIAKIEKRNDVHIILVPNPHMETPHFTVERIRDD 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            A++       +  + P           ++A      +           + E   V +  
Sbjct: 491 NAVITQDDSSYTLVETPDEAPYEPRQAVEQARPQAAVTSIAPKSPAPAPTPEPKKVEKTG 550

Query: 632 RRRRRRR-------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
              R  R          T        +  S          +   +P     H   + G  
Sbjct: 551 LLTRIFRALFGATEEAETKKDSKPSTTTKSRSNQGTQGDRNKRSKPQRTNKHQKRDQGDE 610

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              E    S       + E+   +  P  KK 
Sbjct: 611 RKQE-KPRSTRKTRREQAEAQVKTHAPQAKKK 641



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 54/76 (71%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVDYG 
Sbjct: 3  RMLINATQQEELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLPFLEIHPDYY 79
           RHGFLP  EI   Y+
Sbjct: 63 ERHGFLPLKEISKTYF 78



 Score = 37.3 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 2/166 (1%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
               +  +K    ++G   +       +     QA +  K      + +A     +SE+ 
Sbjct: 593 RSKPQRTNKHQKRDQGDERKQEKPRSTRKTRREQAEAQVKTHAPQAKKKAPQSEERSETK 652

Query: 613 EDIQDNIVSEES--TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
                 +  E+       RKR R   +RR      +A +    ++ Q             
Sbjct: 653 RKATVEVAPEKKVPEVKERKRTRNENKRRNGKLRDEAELAKQENAKQEADAKEAAQIEAQ 712

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +     + A         S     +P  +++ + ++     T
Sbjct: 713 EGQRSDATSTDSASTKERKPRRSRRSRKSPRGDAAPTQAEATQPAT 758


>gi|326424118|ref|NP_761817.2| ribonuclease E [Vibrio vulnificus CMCP6]
 gi|319999500|gb|AAO11344.2| Ribonuclease E [Vibrio vulnificus CMCP6]
          Length = 1036

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 200/650 (30%), Positives = 321/650 (49%), Gaps = 29/650 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 191 WAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629
           + +    + +         +   E   ++         +  E +       ++       
Sbjct: 491 EEVDLLSYLL-----PKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQSVPAPAP 545

Query: 630 KRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           K    +            G+    + ++ + +  S +  +E       +  E G      
Sbjct: 546 KAAVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVEAEKTERKDEREKGNRRQKR 605

Query: 689 NYDVSIP---------------PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           + +                          + +   +     K R  ++RK
Sbjct: 606 DRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDEAIKPRSQQKRK 655



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEER 109


>gi|294055263|ref|YP_003548921.1| ribonuclease, Rne/Rng family [Coraliomargarita akajimensis DSM
           45221]
 gi|293614596|gb|ADE54751.1| ribonuclease, Rne/Rng family [Coraliomargarita akajimensis DSM
           45221]
          Length = 579

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 161/578 (27%), Positives = 269/578 (46%), Gaps = 72/578 (12%)

Query: 6   LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
           LI  S   E RV  L+D  +E+ + E     +  G I+  K+  +EP L+AAFVD G  +
Sbjct: 66  LIINSEPLEKRVAQLKDGVLEKFEVERTGDAREVGAIFKGKIQNLEPGLKAAFVDIGQPK 125

Query: 66  HGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAP 125
           + FL + +I P                                        D+S+E V  
Sbjct: 126 NAFLHYWDILP-------------------------------------AAGDNSIEVVRD 148

Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185
             +  Q   E+  ++  +                          I ++      ++VQI 
Sbjct: 149 NKSEKQRKREKEKVTIKD--------------------------IPKLYPIGTEIVVQIT 182

Query: 186 KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245
           K + G KG   TT ++L GR+ VLMP       ISRKI +  +R  LK I R L +P GM
Sbjct: 183 KGQIGTKGPRTTTNIALPGRFLVLMPYAG-TLGISRKIEDKKERSRLKGILRDLTLPEGM 241

Query: 246 GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK 305
           GVI+RTAG  + +    RD   L++ W+ + +    +  P  +Y E +++ R +RD   +
Sbjct: 242 GVIIRTAGEGKKEHYFIRDLHILLKRWEVITQRMEETKKPACLYVEPDIVGRTVRDFLTE 301

Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365
           D+  ++V  ++ Y    + +  + P     V+ ++D  P+F R  IE Q++  +   V L
Sbjct: 302 DVDRVMVDKKEDYDHVMEEVMKISPRSKSKVQLFKDDIPVFERFNIERQIEQTYMRTVPL 361

Query: 366 PSRGYVIINQTEALVSIDVNSGRSTRE-HCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424
           PS G ++I +TEAL+SIDVN+G    +    +D  LQ NLEAA EIARQ+RLR++ GL++
Sbjct: 362 PSGGEIVIEETEALISIDVNTGSHKNKSKDGKDFILQVNLEAASEIARQVRLRNIGGLVI 421

Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
           +DFIDM+ KK+  +V ++++  +  D+A+  +  IS  G+++M+RQR   S        C
Sbjct: 422 MDFIDMKSKKDRNAVLQRMRREMATDKAKSHILPISTLGIMQMTRQRHSESHASGIYTDC 481

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-------NIIVHTHSDVVLYLLNQKRA 537
            YC G G ++S  ++++ I R +   +              + V  +   +  L N+   
Sbjct: 482 PYCNGRGSVKSSRTMSVEIQRRLISVIRHIRVRDGIDKEIQLRVLLNPTNLDRLRNEDED 541

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
            ++E E  +G +++         + F I      Q   
Sbjct: 542 LLLEIEQSYGAALSFRADPIYHVENFKIIDIETGQEQR 579


>gi|153818441|ref|ZP_01971108.1| ribonuclease E [Vibrio cholerae NCTC 8457]
 gi|126511000|gb|EAZ73594.1| ribonuclease E [Vibrio cholerae NCTC 8457]
          Length = 963

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 202/664 (30%), Positives = 317/664 (47%), Gaps = 39/664 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I++V+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  CKG G IR   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I +V   ++    F + +    
Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608
           +      +        +         D  ++    +E +                 P  +
Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550

Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            + + ++Q        +                 +           D           + 
Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             +  D      +  N+   +              P     E    N  ++ P  ++   
Sbjct: 611 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 670

Query: 719 WKRR 722
             RR
Sbjct: 671 QDRR 674



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|53712844|ref|YP_098836.1| ribonuclease G [Bacteroides fragilis YCH46]
 gi|60681067|ref|YP_211211.1| putative ribonuclease E [Bacteroides fragilis NCTC 9343]
 gi|253563171|ref|ZP_04840628.1| ribonuclease G [Bacteroides sp. 3_2_5]
 gi|265762945|ref|ZP_06091513.1| ribonuclease G [Bacteroides sp. 2_1_16]
 gi|52215709|dbj|BAD48302.1| ribonuclease G [Bacteroides fragilis YCH46]
 gi|60492501|emb|CAH07271.1| putative ribonuclease E [Bacteroides fragilis NCTC 9343]
 gi|251946947|gb|EES87229.1| ribonuclease G [Bacteroides sp. 3_2_5]
 gi|263255553|gb|EEZ26899.1| ribonuclease G [Bacteroides sp. 2_1_16]
 gi|301162552|emb|CBW22099.1| putative ribonuclease E [Bacteroides fragilis 638R]
          Length = 524

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 259/580 (44%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                                          D   H     P  +SL
Sbjct: 60  VGY---------------------------------------EKDAFLHYLDLGPQFNSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPISKATLLPDLD------------------KDGTVANTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ +S AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W+        +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEESITKVQKATKFPTLIYEETSRAVALL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  + E +D++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT+ C  C G G I+S      ++   ++  + +       +H H  V  YL     + 
Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYVAAYLNQGLMSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYVFYDSHGEEIDMKEE 520


>gi|92113716|ref|YP_573644.1| ribonuclease E [Chromohalobacter salexigens DSM 3043]
 gi|91796806|gb|ABE58945.1| RNAse E [Chromohalobacter salexigens DSM 3043]
          Length = 1175

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 219/631 (34%), Positives = 334/631 (52%), Gaps = 7/631 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDFGAERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K+   +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAGR+ VLMPN 
Sbjct: 72  EISREYFTKEPSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGRFLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I      + LK+    L VP  MGVI+RTAG  R+  E++ D +YL+++W+
Sbjct: 132 PRAGGISRRIEGDDRAQ-LKDAMGQLTVPDKMGVIVRTAGIGRSPEELQWDMDYLVQVWE 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + E A    AP L+Y E N+I RA+RD    DI E+++   + + EA  F++ +MPSY 
Sbjct: 191 AITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVHEEALHFIRQVMPSYQ 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ Y D  P+F R  IE Q+++ +Q EV LPS G V+I+ TEALVSID+NS R+TR  
Sbjct: 251 NKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEALVSIDINSARATRGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM   KN R VE +++++LK DRAR
Sbjct: 311 DIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQREVENRVRDALKLDRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGL+EMSRQR+R S+ E++  VC  C G G IR   S++LSI+R +EE  ++
Sbjct: 371 VQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSISLSIMRLIEEEAMK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
             +  I       V  YLLN+KR+ + + E R GV + ++   ++    + +++    Q 
Sbjct: 431 ERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQGVQVVLLPNPDMDTPHYDVQRLRDDQV 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS-ESLEDIQDNIVSEESTGVIRKRR 632
               G +   +    +          D+ +     + +S+        S +         
Sbjct: 491 SEEDGQRSSFELPTTTELTQEPDPALDKPMQRAEAAVKSVAHNAPAPTSLQHDTAPPATP 550

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
                            +            + +    PS  +N    ++GA   T   + 
Sbjct: 551 TPAPAADAPASTPAESGLFSRLVKGLGKLLNGEDSTSPSKQSNDQAQQSGASKTT--SEA 608

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 + +  +S S  D   K+ +    R+
Sbjct: 609 RRQRQGSDQSSTSRSDGDTGSKQRQNDDSRR 639



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y+    S R  + +     Q     V  + 
Sbjct: 62  AERHGFLPLKEISREYFTKEPSGRPNIKEVLKEGQEVIVQVDKEE 106


>gi|331005268|ref|ZP_08328660.1| Ribonuclease E [gamma proteobacterium IMCC1989]
 gi|330420945|gb|EGG95219.1| Ribonuclease E [gamma proteobacterium IMCC1989]
          Length = 902

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 212/569 (37%), Positives = 311/569 (54%), Gaps = 2/569 (0%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++        PK  + ++ I++V+K    ++VQ+ KEERGNKGAA+TT++SLAGR  VL
Sbjct: 71  KEISREYFIKQPKDIEGRFKIKDVLKEGTEVIVQVDKEERGNKGAALTTFISLAGRCMVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +G  ISR+I        L++    ++VP GM VI+RTAG  R+  E++ D  YL+
Sbjct: 131 MPNNPRGGGISRRIEGEER-NELRQTLSQIDVPKGMSVIVRTAGIGRSAEELQWDLNYLL 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           +LW +++  A NS APH +++E N+I RAIRD    DI E+IV   + Y  A  F++ +M
Sbjct: 190 QLWGSIKTEADNSNAPHFIFQESNVIIRAIRDYLRPDIGEVIVDNIETYNLATAFVQQVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P+Y   V+ YED  P+F R  IE Q+++ ++ EV LPS G ++I+ TEALV+ID+NS R+
Sbjct: 250 PNYKSKVKFYEDETPLFNRYQIESQIETAYEREVHLPSGGSIVIDVTEALVAIDINSARA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRD+ GLIV+DFIDM   +N R+VE++++ +L  
Sbjct: 310 TKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMHPARNQRAVEERMQNALNM 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E+T+KVC  C G G IRS  S+ALSILR VEE
Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGHGSIRSTKSIALSILRLVEE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +  +  I   T   V  YLLN+KR  I   EA     I +V   E+    + +++  
Sbjct: 430 EAQKDRSAEIRAITPVKVATYLLNEKRKIIAGIEANNKARIVIVPNAEMVTPHYEVQRLR 489

Query: 570 PVQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                   T +K+    +  S + N       +A +              +  E++  + 
Sbjct: 490 DDDGENFETSYKITGSQEDNSLEDNQPPAPLPQAAVQQVAPSQPVPESTELQEEKTDSLF 549

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                + +         +           N  + +           N N   N  +    
Sbjct: 550 TTLLAKIKAIFAPEPEKEEPKEETKKRYNNRNNRNGRNNNRNGRRNNRNDRNNDRNDGRN 609

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           N           E ++  + +D       
Sbjct: 610 NKSADSAADKKSENKTERNDNDKNNANQG 638



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 64/108 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++    + +LD E+  ++Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQPEELRVALVDGQWLYDLDIENRTREQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
            +RHGFLP  EI  +Y+     D +   K  ++ +  +E +       
Sbjct: 62  ADRHGFLPLKEISREYFIKQPKDIEGRFKIKDVLKEGTEVIVQVDKEE 109



 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 43/164 (26%), Gaps = 8/164 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E  +            GS     + +       +        ++++ +        +   
Sbjct: 622 ENKTERNDNDKNNANQGSSVNERNRNNRRRNSNRKPRNENADQAKTNDANNTATQQDGEK 681

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDV-------SSIQNVIDDSFDMYMEPSDITNHNL 678
               +  RR   R+P       G   +        S+ +N +  + +         N   
Sbjct: 682 SNENRPERRPNNRKPRNQQRSRGRKVETNGESSTESTRENTVKPNDNNDKANEAQANQQK 741

Query: 679 -LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            ++        N   S P V+  + +S N  +       +  K 
Sbjct: 742 TVDTATQATKSNTTDSKPAVAETKADSVNKQTKTASDTVKQQKP 785


>gi|282889909|ref|ZP_06298447.1| hypothetical protein pah_c005o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500232|gb|EFB42513.1| hypothetical protein pah_c005o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 512

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 168/561 (29%), Positives = 279/561 (49%), Gaps = 65/561 (11%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++L++    +E R   LR+ ++  L  E + ++Q+ GNIY   VT +  ++Q+AF+D   
Sbjct: 3   EILLNI-ESKELRYAHLRNGQLYNLIVERKRERQLAGNIYKGSVTNILHNIQSAFIDINE 61

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
             +GF+   +I                        ++    + V   D  +  D    + 
Sbjct: 62  GENGFIHISDI-----------------------LENTKKFEQVYDMDFDLDYDIKGLDD 98

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
                                                         I+EV+K  Q +LVQ
Sbjct: 99  KQQKKQD---------------------------------------IEEVMKIDQPVLVQ 119

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKE  G+KGA +T+ +SLAGRY VL+PN+S    +SRKI +   R+ LK++ R  E+P 
Sbjct: 120 VVKEPIGSKGARLTSNISLAGRYLVLLPNSSHRG-VSRKIEDRNARERLKKLIRAFEMPT 178

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            MG+I RTA A  T   +  +   L+  W  + E    S  P L+Y E +LIKRA+    
Sbjct: 179 DMGLICRTASARATPEMLIAEATDLLSTWHTIMENFHKSSGPSLLYAESDLIKRAVITAV 238

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            K    I+V     Y+  K+        +A  +  Y D  P+F R  +E ++D   + ++
Sbjct: 239 DKRFERILVDDYAVYQSCKNLYSRYASEHALRIEYYRDNVPMFERFNVEREIDKTLRRKI 298

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGL 422
            LPS GY+  ++TEA+ +IDVNSGRS+     +E++ ++ NLEAA+EIARQLRLR++ GL
Sbjct: 299 WLPSGGYLFFDRTEAMYTIDVNSGRSSNNKVDVEESLVRINLEAADEIARQLRLRNIGGL 358

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           ++ DFIDM  +KN R V  +LKE +K+D A+  +  +S FGL+EM+RQR R S++++   
Sbjct: 359 VICDFIDMRYRKNQRRVLDRLKECMKEDSAKCTILGMSEFGLVEMTRQRNRESLIQTIFT 418

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
            C YC G G +++  SV++ I R++++ +       + +  H ++  YL +  +  +++ 
Sbjct: 419 TCPYCSGRGLVKTHESVSIEIERALKKAIAHNQQFALKLVVHPELDHYLASIDKRFLLKI 478

Query: 543 EARFGVSINVVIGIELADKLF 563
                  +   +   L    F
Sbjct: 479 AEGLNARLEFDVNDNLHLNEF 499


>gi|264677096|ref|YP_003277002.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2]
 gi|262207608|gb|ACY31706.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2]
          Length = 978

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 189/538 (35%), Positives = 292/538 (54%), Gaps = 6/538 (1%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 7   QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 66

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  I +VI+  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 67  FKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 127 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A  S    L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP
Sbjct: 186 LWSAIDGAAKASKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 246 EHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSVDVNSARAI 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D
Sbjct: 306 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRLRDALRQD 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR++ ++ E     C  C G+G+IR   S AL ILR ++E 
Sbjct: 366 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQILRIIQEE 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     +      +V  +LLN+KR+ I + E +  V++ +V    +    + +E+   
Sbjct: 426 SMKDNTAAVHCQVPVEVASFLLNEKRSEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 485

Query: 571 VQALVNTGHKVGSDSQAPSY-----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             + + +       +  P        ++ E   +   ++     ++   I +     +
Sbjct: 486 DDSRLESMEASYKLADEPEEVTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPPRQ 543



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/107 (41%), Positives = 63/107 (58%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG +
Sbjct: 1   MLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGED 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 61  RHGFLPFKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGN 107


>gi|117921008|ref|YP_870200.1| RNAse E [Shewanella sp. ANA-3]
 gi|117613340|gb|ABK48794.1| RNAse E [Shewanella sp. ANA-3]
          Length = 1098

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 212/621 (34%), Positives = 315/621 (50%), Gaps = 10/621 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ + I        E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+   Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LEVPAGMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A +  AP L+++E N+I RAIRD   +D+ EI++   + + EAK  + L+ 
Sbjct: 189 HHWAAITEAAQSKPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
               +  + +K     +A  Y    E    +    P P  +     Q    +   T    
Sbjct: 489 TDDEIDESSYKRIEQPEAKLY----EPRKLERTAAPAPALKGFTAPQKVEQAAAPTANKV 544

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           +        +  +        SD  + +   +         +    +   +       ++
Sbjct: 545 EATEPGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTRNNQD 604

Query: 690 YDVSIPPVSTPEMESSNSSSD 710
            D +      P   ++  S+D
Sbjct: 605 ADKAKEGTREPRTRNAKKSAD 625



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|323499351|ref|ZP_08104327.1| ribonuclease E [Vibrio sinaloensis DSM 21326]
 gi|323315536|gb|EGA68571.1| ribonuclease E [Vibrio sinaloensis DSM 21326]
          Length = 1001

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 199/634 (31%), Positives = 318/634 (50%), Gaps = 15/634 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFDVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629
           +      + +         +   E   ++         +  E +       SE +    +
Sbjct: 491 EEFDLLSYLL-----PKKLEAMKEAEGREAPEAEAKPKKLEEPVLKGFAAPSESAPTPPK 545

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNV--IDDSFDMYMEPSDITNHNLLENGAHGFT 687
              +   ++    +    G+VS             S +        T  +  +   +   
Sbjct: 546 PAPKATEKKAEKVEESQPGLVSRFFKALGSFLFGSSTEEEKVEEKKTQSDKKDGQRNNRN 605

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                     ++ +  + N   +   K+ R  KR
Sbjct: 606 RRGRNDNRRRNSRDNRNDNRKDNRENKEARNDKR 639



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 42/145 (28%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            +T  +   + +  S  K+ +   ++       +  +  D +++   +       +  +R
Sbjct: 580 SSTEEEKVEEKKTQSDKKDGQRNNRNRRGRNDNRRRNSRDNRNDNRKDNRENKEARNDKR 639

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
             RR+PA D       ++    QN               TN  + E G    +E      
Sbjct: 640 DNRRKPARDDSTNDNKANERKQQNRKPKQDRRNKRDDAKTNSKVAEEGLKLASEAQKAEK 699

Query: 695 PPVSTPEMESSNSSSDPIVKKTRWW 719
           P  S  +               +  
Sbjct: 700 PNRSEEKAAKVKERRQRRKLSKQVR 724


>gi|126668126|ref|ZP_01739088.1| Ribonucleases G and E [Marinobacter sp. ELB17]
 gi|126627396|gb|EAZ98031.1| Ribonucleases G and E [Marinobacter sp. ELB17]
          Length = 1092

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 207/619 (33%), Positives = 325/619 (52%), Gaps = 11/619 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------VE 150
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  ++      ++
Sbjct: 12  EELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDFGADRHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++     +  P + + +  I++VI   Q ++VQ+ KEERGNKGAA+TTY+SLAGRY VLM
Sbjct: 72  EISKEYFKKSPGQIEGKVNIKDVIAEGQEVIVQVDKEERGNKGAALTTYISLAGRYLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN ++   ISR+I      + LKE    ++VP  MG+I+RTAG  R   E++ D +YL++
Sbjct: 132 PNNARAGGISRRIEGEERAQ-LKEAMNQVQVPKSMGIIVRTAGIGRNSEELQWDLDYLVQ 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ + + A    AP L+++E N+I RA+RD   +DI E+++     + +  +F++ +MP
Sbjct: 191 FWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHEDVLNFVRAVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           ++   ++ Y D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T
Sbjct: 251 TFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           + H IE+TALQTNLEAAEEI RQLRLRD+ GLIV+DFIDM   +N R VE K++E+L+ D
Sbjct: 311 KGHDIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREVENKMREALEID 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQVG IS FGLLEMSRQR+R S+ E+ ++VC  C+G G IR   S+ALSI+R + E 
Sbjct: 371 RARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +     +       V  +LLN+KR  +   EA   VSI +V   ++    F I +   
Sbjct: 431 SSKDKTGEVRAVVPVSVATFLLNEKRKQLATIEANQEVSIVIVPVPQMETPHFEIIRMRD 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECV-WQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
            +             +    ++ +  V  Q++ +      +S+       V         
Sbjct: 491 DETGSEHVSSHQVAQEYSEREEEVADVTVQEKPVREQAAVKSVRPASPVPVPATKPAATP 550

Query: 630 KRRRRRRRRRP---ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
            +    + R     +       +  +         DS           +    +      
Sbjct: 551 AKAAAEKTRDEGMFSRLGRKIALFFNGEEESQPAADSSSNRNAKQAGGDDRSRQRPTSSR 610

Query: 687 TENYDVSIPPVSTPEMESS 705
            +  D     V+  + + +
Sbjct: 611 NDRQDRRKTRVARDDQQDT 629



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 58/78 (74%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++   R+ +LD ES  ++Q K NIY  K+TRVEPSL+AAFVD+G
Sbjct: 2  KRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
           +RHGFLP  EI  +Y++
Sbjct: 62 ADRHGFLPLKEISKEYFK 79


>gi|145273|gb|AAA23443.1| RNase E [Escherichia coli]
          Length = 815

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 187/527 (35%), Positives = 290/527 (55%), Gaps = 9/527 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSR R+  S+ ES+  VC  C G G +R   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRHRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR+ +   E R  GV   +V   ++    +++ +  
Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVVRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +      + +     +A +     E   +     P   + ++ D+
Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|330869278|gb|EGH03987.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 685

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 221/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 668 EERPARTSRERKPREAR 684



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEE 103


>gi|167032491|ref|YP_001667722.1| ribonuclease [Pseudomonas putida GB-1]
 gi|166858979|gb|ABY97386.1| ribonuclease, Rne/Rng family [Pseudomonas putida GB-1]
          Length = 1086

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 315/617 (51%), Gaps = 9/617 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL VP  MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++       EA  F++ +MP YA
Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490

Query: 574 LV-----NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            V     +         +AP        V Q+ A+   P   +          + +  V 
Sbjct: 491 EVLNNQSSYEIAAAETEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAPVA 550

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                               + +           + +         N             
Sbjct: 551 PAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVAAEKPAAERSPRNEERRNGRQQSRNR 610

Query: 689 NYDVSIPPVSTPEMESS 705
           N           E    
Sbjct: 611 NGRRDEERKPREERAER 627



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  SERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 106


>gi|94676970|ref|YP_588881.1| ribonuclease E [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220120|gb|ABF14279.1| ribonuclease E [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 589

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 187/524 (35%), Positives = 278/524 (53%), Gaps = 7/524 (1%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151
           +    +               ++ ++     +        E   E+    +         
Sbjct: 11  QHEELRIALVDGQKLYDLDIESLGHEQKKANIYKGIITRIEQSLEAAFVDHGAERHGFLP 70

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            K  S E  P     +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 71  FKEISREYFPPNSTNKLNIKDVLREGQEIIVQIDKEERGNKGAALTTFISLAGSYLVLMP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 131 NNPRAGGISRRIEGESR-NELKEALSLLELPEGMGLIIRTAGIGKSAEALQWDLSFRLQH 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330
           W  ++++A +  AP L+++E N++ RA RD    DI EI++        AK  + LL  P
Sbjct: 190 WQAIKKIANSRPAPFLIHQESNVLVRAFRDYLRPDIGEILIDNSNILDLAKKHITLLGRP 249

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 250 DFTSKIKFYNGETPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARST 309

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEA EEIARQLRLRDLAGLIV+DFIDM   ++ R VE  L++++++D
Sbjct: 310 RGSDIEETAFNTNLEAVEEIARQLRLRDLAGLIVIDFIDMTPIRHQRLVENCLRDAVRQD 369

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLE+SRQR+ SS+ +S+  +C  C G G IR   S++LSILR +EE 
Sbjct: 370 RARIQIGRISRFGLLELSRQRLSSSLRDSSHHLCPRCGGTGTIRDNESLSLSILRVIEEE 429

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  I   E R  GV   +V   ++    + + +  
Sbjct: 430 TLKDNTHEVHAIVPVPIASYLLNEKRDAINAIEKRQGGVRAVIVPNDQMQTPHYIVLRRR 489

Query: 570 PVQALVNTGHKVGS----DSQAPSYDKNIECVWQDEALLPIPKS 609
             +      + +           + D   E    D+  L     
Sbjct: 490 KGEKATTLSYLLPKLYCTAKMNLAEDIPNERKSSDKPYLAKQDK 533



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLI+A+  EE R+ ++   ++ +LD ES   +Q K NIY   +TR+E SL+AAFVD
Sbjct: 1   MMKRMLINATQHEELRIALVDGQKLYDLDIESLGHEQKKANIYKGIITRIEQSLEAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           +G  RHGFLPF EI  +Y+  P S  +  +K+      +     D    G+
Sbjct: 61  HGAERHGFLPFKEISREYF-PPNSTNKLNIKDVLREGQEIIVQIDKEERGN 110


>gi|289649338|ref|ZP_06480681.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 1094

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 222/669 (33%), Positives = 327/669 (48%), Gaps = 62/669 (9%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 599 -----------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                                  ++E   P+   +   + +     E   G  + R R  
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           RR        +     + +  +           EP +    +         T        
Sbjct: 608 RRDEERKPREERAPREERAPREERAPREERTVREPREAREDSAPREERPARTSRERKPRE 667

Query: 696 PVSTPEMES 704
                 +  
Sbjct: 668 AREDRPVRE 676



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEE 103


>gi|146282970|ref|YP_001173123.1| ribonuclease E [Pseudomonas stutzeri A1501]
 gi|145571175|gb|ABP80281.1| ribonuclease E [Pseudomonas stutzeri A1501]
          Length = 1070

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 217/607 (35%), Positives = 321/607 (52%), Gaps = 32/607 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 27  EELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAERHGFLPLK 86

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 87  EISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 146

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL +PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 147 PRAGGISRRIEGEER-NELREALNGLNIPADMGLIVRTAGLGRSSEELQCDLDYLLQLWT 205

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            V++ + +  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 206 AVKDASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYA 265

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 266 SKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 325

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E+L+ DRAR
Sbjct: 326 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRAR 385

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           +QVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 386 IQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 445

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 446 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 505

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST-------- 625
            +  G      SQ+ + +       +           + +       +  +         
Sbjct: 506 EIIAGQASYEMSQSEAEEVQPVSSTRTLVRQEAAVKTAPQRSAPATSAAPAPAEAPVATP 565

Query: 626 --------------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                                    +   +  ++PA+              QN   DS +
Sbjct: 566 AQEPSLFKGLIKSLVGLFAGKAEEPQAAAQVEKKPASARPQRNDERRSGRQQNRRRDSRN 625

Query: 666 MYMEPSD 672
              E   
Sbjct: 626 GRDEERK 632



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 60/105 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TRVEPSL+AAFVD+G
Sbjct: 17  KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFG 76

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y+      R  +       Q     V  + 
Sbjct: 77  AERHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEE 121


>gi|319943486|ref|ZP_08017768.1| ribonuclease E [Lautropia mirabilis ATCC 51599]
 gi|319743301|gb|EFV95706.1| ribonuclease E [Lautropia mirabilis ATCC 51599]
          Length = 1068

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 204/617 (33%), Positives = 298/617 (48%), Gaps = 60/617 (9%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   IQ+VI   Q L+VQ+ KEERGNKGAA+TT +SLAGRY VLMPN  +G  +SR+I  
Sbjct: 86  KPLRIQDVISEGQELIVQVEKEERGNKGAALTTMISLAGRYVVLMPNNPRGGGVSRRIEG 145

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++ L+E    L+VP+GM +I RTAG  R+  E++ D  YL++LW  +   A ++   
Sbjct: 146 EDRQE-LREAMDKLQVPSGMSLIARTAGIGRSVEELQWDLNYLLQLWQAIESAAKSAPGA 204

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y+E +L+ RAIRD +  DI E+++  E  Y++A  FM  +MP Y   V+ Y D  P+
Sbjct: 205 FLIYQESSLVIRAIRDYFTADIGEVLIDTEDIYQQATQFMSYVMPDYVARVKYYRDATPL 264

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R  IE Q+++ +   V LPS G ++I+ TEALV+IDVNS R+TR   IE+TA +TN+E
Sbjct: 265 FSRFQIEHQIETAYSRVVPLPSGGAIVIDHTEALVAIDVNSARATRGSDIEETAFRTNME 324

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEE+ARQ+RLRDL GLIV+DFIDME  +N R VE+ LKE+L  DRARVQ G IS FGL+
Sbjct: 325 AAEEVARQMRLRDLGGLIVIDFIDMESSRNQREVEQCLKEALSLDRARVQTGKISRFGLM 384

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E+SRQR+R ++ E T   C  C G G IR   S AL +LR ++E  ++     + V    
Sbjct: 385 ELSRQRLRPALNEGTHITCPRCNGTGVIRDIESSALHVLRVLQEEAMKENTAAVHVQVPV 444

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           +V  YLLN+KR  I   EAR  V I ++    +   L+ +E+       + T     + +
Sbjct: 445 EVATYLLNEKRTEIATLEARLKVEIVLIPNKSIETPLYSLERLKHDDERLLTYRASYAMA 504

Query: 586 QAPSYDKNIECVWQDEALLPIP-------------------------------------- 607
           +A   +         +                                            
Sbjct: 505 EANDEENTYLANKFKQPGNRQEAVVKGITRDQPPAPPPARPAAAPAASSTPAASSTHGGL 564

Query: 608 -----------KSESLEDIQDNIVSEES----------TGVIRKRRRRRRRRRPATDHHD 646
                       +   E  +      +            G  R  R  RR  R  ++  +
Sbjct: 565 LDRILNLFGWGAAHGAETAETAERPSDDGRNRTARNAGNGTSRSERGNRRGERSDSEGRN 624

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
                     +           E SD       E       +    +  P  + E   + 
Sbjct: 625 GRRNERNGRSERTERAERTERAEASDNGKRTRGERSNGRQRDEARDTREPRESREGRDTR 684

Query: 707 SSSDPIVKKTRWWKRRK 723
            +     +  R  +  +
Sbjct: 685 DARQNGERADRNGRNER 701



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EE RV ++   R+ ++D ES  ++  K NIY   VTRVEPSL+A FV+YG
Sbjct: 2   KRMLFNATHSEELRVAIVDGQRLIDIDIESAGRESRKSNIYKGVVTRVEPSLEACFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQAL-LKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y++      + L +++      +     +    G+
Sbjct: 62  EDRHGFLPFKEISRSYFRQDVEGGKPLRIQDVISEGQELIVQVEKEERGN 111


>gi|320156797|ref|YP_004189176.1| ribonuclease E [Vibrio vulnificus MO6-24/O]
 gi|319932109|gb|ADV86973.1| ribonuclease E [Vibrio vulnificus MO6-24/O]
          Length = 1033

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 199/629 (31%), Positives = 318/629 (50%), Gaps = 14/629 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L++ 
Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 188 WAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629
           + +    + +         +   E   ++         +  E +       ++       
Sbjct: 488 EEVDLLSYLL-----PKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQSVPAPAP 542

Query: 630 KRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           K    +            G+    + ++ + +  S +  +E       +  E G      
Sbjct: 543 KAAVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVEAEKTERKDEREKGNRRQKR 602

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           + +           ES+        ++ R
Sbjct: 603 DRNDRRRNNRDNSRESNRDRDGKRRQRNR 631



 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TRVEPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEER 106



 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 33/133 (24%)

Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
           S  +    +K      +++      +  +     +   S ES      +RR+R R     
Sbjct: 577 SAEEKVEAEKTERKDEREKGNRRQKRDRNDRRRNNRDNSRESNRDRDGKRRQRNRDENVV 636

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
           +  D  +       +                 N  + E G     E    S         
Sbjct: 637 ETQDEAIKPRSQQKRKQKPAQNKADNAVESKANAKVAEKGLQLAAEAQGASKQEGQKTPS 696

Query: 703 ESSNSSSDPIVKK 715
           ++         +K
Sbjct: 697 KAEKVKERRQRRK 709



 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 37/142 (26%), Gaps = 5/142 (3%)

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
            ++     +  E   + E      K +  +  ++N  +   +   R  +RR+R R     
Sbjct: 577 SAEEKVEAEKTERKDEREKGNRRQKRDRNDRRRNNRDNSRESNRDRDGKRRQRNRDENVV 636

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-----ENGAHGFTENYDVSIPPVS 698
                 +   S  +     + +      +   +  +     +  A     +        S
Sbjct: 637 ETQDEAIKPRSQQKRKQKPAQNKADNAVESKANAKVAEKGLQLAAEAQGASKQEGQKTPS 696

Query: 699 TPEMESSNSSSDPIVKKTRWWK 720
             E          + K  R   
Sbjct: 697 KAEKVKERRQRRKLNKPVRVKD 718


>gi|327402189|ref|YP_004343027.1| ribonuclease, Rne/Rng family [Fluviicola taffensis DSM 16823]
 gi|327317697|gb|AEA42189.1| ribonuclease, Rne/Rng family [Fluviicola taffensis DSM 16823]
          Length = 515

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 155/559 (27%), Positives = 251/559 (44%), Gaps = 70/559 (12%)

Query: 1   MANKMLIDASHVEETR-----VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55
           M+ ++++D      TR     + +LRD ++ EL  E        G+IYL KV +V PSL 
Sbjct: 1   MSLELVVD------TRDGGVWLALLRDGKLIELHQEQGSTDFAVGDIYLGKVRKVVPSLN 54

Query: 56  AAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIP 115
           AAFVD G  +  FL +L++ P +                                     
Sbjct: 55  AAFVDVGYEKDAFLHYLDLGPQF------------------------------------- 77

Query: 116 NDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIK 175
                +         Q   +     +  D+  + +  +                   ++ 
Sbjct: 78  -QSLNKFTKDTLQGKQNVSDLLYFKSEKDIPKDGKITE-------------------ILS 117

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               +LVQ+ KE   +KG  ++  L+LAGRY VL+P + K     +  +     +  +  
Sbjct: 118 TTSPILVQVAKEPISSKGPRLSAELTLAGRYLVLVPFSEKVSISQKIKSQEERDRLRR-- 175

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                 P   GVI+RT   ++    I +D   LM  W  +      +  P  V  E +  
Sbjct: 176 LMDDIRPKNFGVIIRTVAENKKVEAIDQDLRNLMEKWKTMHANLKQATPPRRVLGEIDKT 235

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
              +RDL   D S I VS EK   E KD++  + P   +I++ Y+    IF R GI  Q+
Sbjct: 236 SSILRDLLNADFSNIHVSDEKLMGELKDYISGIAPGREKILKLYDGKLNIFERFGINKQI 295

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
            ++   +V LPS GY+II  TEA+  +DVNSG        E  AL TN+EAAEEIAR L+
Sbjct: 296 KTMFGKKVPLPSGGYLIIEHTEAMHVVDVNSGNRKGADGQESNALATNVEAAEEIARVLQ 355

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LRD+ G++ +DFIDM +K+NN+ + +KLKE ++ DRA+  +   S FG++E++RQR+R  
Sbjct: 356 LRDMGGIVCIDFIDMHDKENNKDLFEKLKEFMRSDRAKHNILPPSKFGVVEITRQRVRPE 415

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
              +T++ C  CKG G +++    A  I  ++   L       I +  H  +  Y     
Sbjct: 416 TDINTSETCPTCKGTGEVQASILFAEEIEMNLNFLLSDKKEKKISLLVHPYLEAYFKKGF 475

Query: 536 RATIVEYEARFGVSINVVI 554
            +   ++  ++   ++V  
Sbjct: 476 ISKQWKWFLKYKKWVDVRG 494


>gi|257487559|ref|ZP_05641600.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 700

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 668 EERPARTSRERKPREAR 684



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|301382848|ref|ZP_07231266.1| ribonuclease E [Pseudomonas syringae pv. tomato Max13]
 gi|302062846|ref|ZP_07254387.1| ribonuclease E [Pseudomonas syringae pv. tomato K40]
 gi|302131354|ref|ZP_07257344.1| ribonuclease E [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331019165|gb|EGH99221.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 1109

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598
                                                     + + AP   +        
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 547

Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                                  +    +  +   +   +   +        +++ R R 
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 607

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
            R   +       +                 E         +        E+      P 
Sbjct: 608 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 667

Query: 698 STPEMESSNSSSDPIV 713
            T        + +   
Sbjct: 668 RTSRERKPREAREDRP 683



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|330966257|gb|EGH66517.1| ribonuclease E [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 1112

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 218/608 (35%), Positives = 325/608 (53%), Gaps = 4/608 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
             +        + A +  + I  +      L   ++              +         
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPAEVAAPAPTP 547

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                 P+        +  + + +     +  +  +P+        E   +G  ++   +
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 607

Query: 694 IPPVSTPE 701
                  +
Sbjct: 608 NRRDEERK 615



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|156975191|ref|YP_001446098.1| ribonuclease E [Vibrio harveyi ATCC BAA-1116]
 gi|156526785|gb|ABU71871.1| hypothetical protein VIBHAR_02918 [Vibrio harveyi ATCC BAA-1116]
          Length = 1035

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 194/538 (36%), Positives = 293/538 (54%), Gaps = 11/538 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ +KL+ P 
Sbjct: 191 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FISRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           +      + +         +   E   ++ A + I      E +     +   T    
Sbjct: 491 EEFDLLSYLL-----PKKLEAMKEAEGKEPAEVDIKPKRIEEPVLKGFAAPTQTAPAP 543



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109



 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 37/130 (28%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K            +    +Q P  +  +       A      +E+  +      + ++  
Sbjct: 652 KQQNRNQKRKPRAQQAEKAQEPKANAKVAEKGLQLAAEARTGTEAKPEESKAKSNAKAEK 711

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           V  +R+RR+  +        A   ++       I ++ +  +E          ++     
Sbjct: 712 VKERRQRRKLNKSVRVKDQQAAEKAEQEVPVQTIVEAVEAPVEKPVEAAAEAQQDNKAES 771

Query: 687 TENYDVSIPP 696
            +  +   P 
Sbjct: 772 KQRRNRRSPR 781


>gi|260776341|ref|ZP_05885236.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607564|gb|EEX33829.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450]
          Length = 973

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 198/633 (31%), Positives = 316/633 (49%), Gaps = 12/633 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPDGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     L++P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALDTLDLPKGMGLIVRTAGVGKSAEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ +  + AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WGAIKQASDANPAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIQLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+++++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR +I   E    V I VV   ++    F + +    
Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSINHIERIQEVKITVVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +         +   E   ++ A   +   +  E       +   +    K+
Sbjct: 488 EEFDLLSYLL-----PKKLESMKEAEGREVAEPEVKPKKLEEPALKGFAAPAQSAPAPKQ 542

Query: 632 RRRRRR-RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++   ++        G+VS           S +   E  +       +        N 
Sbjct: 543 PVKKAPEKKSEPRDEKPGLVSRFFKALGSFLFSSEPEKEQVEEKQEKAAKKDGQRNNRNR 602

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                       ++ N + +      R   +R+
Sbjct: 603 RNRNDQRRRNSRDNRNENREDKRDNKRNKPQRE 635



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAREYFPDGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106



 Score = 44.2 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 47/157 (29%), Gaps = 5/157 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-----SESLEDIQDNIV 620
           E+           ++    ++ P  D+  +     +A     +     +E+ +D + N  
Sbjct: 635 ERDEAANENKAASNERKQQNRKPKQDRRNKQRDDAKASKVAEEGLKLAAEAQKDDKPNRA 694

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            E++T V  +R+RR+  ++       A   +     Q   +   +   + ++       E
Sbjct: 695 EEKTTKVKERRQRRKLSKQVRVKDQKAKAEAVEEVKQVKAEAVAEAIEQSTEEVAAEDAE 754

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                        +           +   +P   +  
Sbjct: 755 QPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKG 791



 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 35/124 (28%), Gaps = 4/124 (3%)

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD---- 652
             + +     P+ E  E   +N  +        ++ ++ RR +   D   + V  +    
Sbjct: 622 EDKRDNKRNKPQRERDEAANENKAASNERKQQNRKPKQDRRNKQRDDAKASKVAEEGLKL 681

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +  Q     +                +       ++       V   +   + + ++ I
Sbjct: 682 AAEAQKDDKPNRAEEKTTKVKERRQRRKLSKQVRVKDQKAKAEAVEEVKQVKAEAVAEAI 741

Query: 713 VKKT 716
            + T
Sbjct: 742 EQST 745


>gi|74318455|ref|YP_316195.1| RNAse G [Thiobacillus denitrificans ATCC 25259]
 gi|74057950|gb|AAZ98390.1| ribonuclease E and G [Thiobacillus denitrificans ATCC 25259]
          Length = 483

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 121/565 (21%), Positives = 223/565 (39%), Gaps = 85/565 (15%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +  +ETRV VL    V+EL  E    + +  NIY+ +V RV P +Q+AF+D
Sbjct: 1   MSEEILVNVT-PQETRVAVLHLGAVQELHIERAKCRGLVSNIYMGRVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +I                 E          +   +  G   +      
Sbjct: 60  IGLERAAFLHVADI----------------WEERHNGETERPIEQILHEGQNLMVQVIKD 103

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  S +              +++   +    E+  ++ +++             
Sbjct: 104 PIGTKGARLSTQISFAGRYLVYLPQETHIGISQKIEGEEEREQLRQKLHQ---------- 153

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                       L+P  + G  I R +    +   +      L 
Sbjct: 154 ----------------------------LIPQDATGGFIVRTMAETAEDAEMLADIDYLR 185

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                   +++ G       + +D +  +R+  +                          
Sbjct: 186 RLWSS---IQSRGNCVVPCLLYQDLDLSLRVLRDFVNR---------------------- 220

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                D + I++   + Y+   +F +    +    ++ Y    P+F    IE ++     
Sbjct: 221 -----DTTRILIDSRETYQRMAEFAQNYTHAVLDKLQHYGADRPLFDLHAIEDEIAKALG 275

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY+II+QTEAL ++DVN+G        +DT  +TNLEAA+ IARQLRLR+L 
Sbjct: 276 RRVDLKSGGYLIIDQTEALTTVDVNTGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLG 335

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+  ++  +V  +LK++L +D  R  V   S  GL+EM+R+R R S+    
Sbjct: 336 GIIIIDFIDMDNVEHQDAVLTELKKALTRDPTRTTVSGFSTLGLVEMTRKRTRESLAHVL 395

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C G G I++  +V   +LR +     Q+ A    +     V+   L+++  ++ 
Sbjct: 396 CEPCPTCAGRGEIKTAQTVCYDVLREILREARQFDAREYRILAAQSVIDLFLDEESGSLA 455

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           +     G  +++ +      + + I
Sbjct: 456 QLIDFIGKPVSLQVETTYPQEQYDI 480


>gi|90021266|ref|YP_527093.1| RNAse E [Saccharophagus degradans 2-40]
 gi|89950866|gb|ABD80881.1| RNAse E [Saccharophagus degradans 2-40]
          Length = 968

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 206/567 (36%), Positives = 302/567 (53%), Gaps = 16/567 (2%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++        PK    +  IQ+V+K    ++VQ+ KEERGNKGAA+TT++SLAGRY VL
Sbjct: 71  KEISREYFAKQPKDIDGRIRIQDVVKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK+    ++VPAGMG+I+RTAG  R   E++ D  YL 
Sbjct: 131 MPNNPRAGGISRRIDGDDRTE-LKDALSQIDVPAGMGIIVRTAGVGRRAEELQWDMNYLA 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           +LW +++  A    AP  +++E N+I RAIRD    DI E+IV  +  Y  A  F++ +M
Sbjct: 190 QLWASIKTAAEEKTAPEFLFQESNVIIRAIRDYLRPDIGEVIVDNQDAYNLATAFVEQVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P+Y   V+ YE+P P+F R  IE Q+++  + EV LPS G ++I+ TEAL+SID+NS R+
Sbjct: 250 PNYRSKVKLYEEPLPLFNRFQIESQIETAFEREVKLPSGGSIVIDVTEALISIDINSSRA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM+  +N R VE +++++L+ 
Sbjct: 310 TKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQREVENRMRDALEM 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E+T+KVC  C G G IR   S+ALSILR VEE
Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSIALSILRLVEE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +  +  I       V  YLLN+KR  I   E R    I ++   ++    F +++  
Sbjct: 430 EAQKERSAEIRAVVPVAVATYLLNEKRKVISGIEERQKTRIVIIPSEKMTTPHFDVQRLR 489

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQ---------------DEALLPIPKSESLED 614
               + +         Q    +K  +                     A         L  
Sbjct: 490 DDDVVSSEISYKIEVPQGEDEEKIQDDAAALAKLPRPAVQAIPPAQPAPEAPKPDSLLTK 549

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
           I   +     T   +++   +  R       +    +   +       + +      D  
Sbjct: 550 ILKKLKELFKTDDKKRKNTSKNSRGQQRRRGNNSQNNRNRNRNRNGRGNDNRNKNRDDEI 609

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPE 701
             NL        ++         + P+
Sbjct: 610 TDNLSSRTKSDQSQQGQGPSSDDNRPD 636



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++    + +LD E+  ++Q K NIY  ++TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQPEELRVALVDGQWLYDLDIENRLREQKKANIYKGRITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 SERHGFLPLKEISREYF 78


>gi|289624527|ref|ZP_06457481.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 693

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 221/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 668 EERPARTSRERKPREAR 684



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEE 103


>gi|213969772|ref|ZP_03397907.1| RNAse E [Pseudomonas syringae pv. tomato T1]
 gi|213925580|gb|EEB59140.1| RNAse E [Pseudomonas syringae pv. tomato T1]
          Length = 1112

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 12  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 191 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 490

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598
                                                     + + AP   +        
Sbjct: 491 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 550

Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                                  +    +  +   +   +   +        +++ R R 
Sbjct: 551 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 610

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
            R   +       +                 E         +        E+      P 
Sbjct: 611 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 670

Query: 698 STPEMESSNSSSDPIV 713
            T        + +   
Sbjct: 671 RTSRERKPREAREDRP 686



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 62  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 106


>gi|182677923|ref|YP_001832069.1| ribonuclease [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633806|gb|ACB94580.1| ribonuclease, Rne/Rng family [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 1005

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 288/528 (54%), Positives = 363/528 (68%), Gaps = 8/528 (1%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV- 149
           +       +    A ++    V  P      +         E +E       ++ V  + 
Sbjct: 233 ENDEAPSEELPFNATELAGTAVAAPEAIPTRDDFGNDFNDDEGDEGDETEEEDEQVEQIG 292

Query: 150 -EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
            +            +++RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSV
Sbjct: 293 GDSDAMEEAMHRAPRYRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSV 352

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           LMPNT++G  ISRKIT+  DR+ LK IA+ LEVP GMGVILRTAGA+RTK E+KRDFEYL
Sbjct: 353 LMPNTARGGGISRKITDAGDRQRLKAIAQELEVPEGMGVILRTAGAARTKAEVKRDFEYL 412

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           +R+W+ VRE+ L S AP LVYEEG+LIKRAIRDLY KDI EIIVSGE GYREAKDFM++L
Sbjct: 413 LRMWETVREMTLKSTAPTLVYEEGSLIKRAIRDLYNKDIDEIIVSGEAGYREAKDFMRML 472

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           MPS+A+ V+ Y DP PIF ++G E QLD++   +VTL S GY++INQTEALV+IDVNSGR
Sbjct: 473 MPSHAKSVQLYRDPQPIFAKAGAEAQLDAMFSNQVTLRSGGYLVINQTEALVAIDVNSGR 532

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           STREH IEDTA++TNLEAA+EIARQLRLRDLAGLIV DFIDMEE +NNR+VE++LKE+LK
Sbjct: 533 STREHNIEDTAVRTNLEAADEIARQLRLRDLAGLIVADFIDMEEGRNNRAVERRLKEALK 592

Query: 449 KDRARVQVGAISNFGLLEMSRQRI--RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
            DRAR+QVG IS+FGLLEMSRQ    R+ V E +T +C +C GAG +RS SS+AL +LR 
Sbjct: 593 NDRARIQVGRISHFGLLEMSRQ--RIRTGVFEGSTVICPHCLGAGMVRSTSSIALHVLRL 650

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF-YI 565
           +E+ L++  A++I V T + + LY+LNQKR  + E E RFGVSI V     L    +  +
Sbjct: 651 LEDALIKNAAYDITVKTRTVIALYILNQKRTNLRELEQRFGVSITVAADESLTGMTYHAL 710

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
           E+G           +  +   A  +  + E   + EA    P S S E
Sbjct: 711 ERGELAS-GTKLPVRETAIGPADIFPLDEEEEIEMEAEELEPVSGSDE 757



 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 85/172 (49%), Positives = 99/172 (57%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLIDASH EETRVVVLR NRVEE DFES  KKQ++GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP  DRQAL++E   AQ + +               D + 
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQHEEDEEPQAPRRSRRYRRGDRNG 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE 172
           +  A       +    S +       +  +      P+         +    
Sbjct: 121 QRAAEKRRNEDDVLALSPVLPEAVEPAPDQAEMTDEPQAFYTADSTDHFPHF 172


>gi|327481321|gb|AEA84631.1| ribonuclease E [Pseudomonas stutzeri DSM 4166]
          Length = 1052

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 217/607 (35%), Positives = 320/607 (52%), Gaps = 32/607 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 9   EELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL +PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLNIPADMGLIVRTAGLGRSSEELQCDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            V++ + +  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AVKDASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E+L+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           +QVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 IQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 428 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST-------- 625
            +  G      SQ+ + +       +           + +       +            
Sbjct: 488 EIIAGQASYEMSQSEAEEVQPVSSTRTLVRQEAAVKTAPQRSAPATSAAPPPAEAPVATP 547

Query: 626 --------------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                                    +   +  ++PA+              QN   DS +
Sbjct: 548 AQEPSLFKGLIKSLVGLFAGKAEEPQAAAQVEKKPASARPQRNDERRSGRQQNRRRDSRN 607

Query: 666 MYMEPSD 672
              E   
Sbjct: 608 GRDEERK 614



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 59/103 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TRVEPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y+      R  +       Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEE 103


>gi|28870994|ref|NP_793613.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854243|gb|AAO57308.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 1128

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 28  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 88  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 266

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 387 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598
                                                     + + AP   +        
Sbjct: 507 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 566

Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                                  +    +  +   +   +   +        +++ R R 
Sbjct: 567 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 626

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
            R   +       +                 E         +        E+      P 
Sbjct: 627 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 686

Query: 698 STPEMESSNSSSDPIV 713
            T        + +   
Sbjct: 687 RTSRERKPREAREDRP 702



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 18  KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 78  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122


>gi|255008356|ref|ZP_05280482.1| putative ribonuclease E [Bacteroides fragilis 3_1_12]
 gi|313146080|ref|ZP_07808273.1| ribonuclease G [Bacteroides fragilis 3_1_12]
 gi|313134847|gb|EFR52207.1| ribonuclease G [Bacteroides fragilis 3_1_12]
          Length = 524

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 258/580 (44%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                                          D   H     P  +SL
Sbjct: 60  VGY---------------------------------------EKDAFLHYLDLGPQFNSL 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+        ++       +     +                   +   +   +K  Q +
Sbjct: 81  EKYVKQTLSDKKKLNPISKATLLPDLD------------------KDGTVANTLKVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQIVKE    KG  +T+ +S AGRY VL+P   K     +  ++    +   +      
Sbjct: 123 VVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W+        +   P L+YEE +     +
Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEESITKVQKATKFPTLIYEETSRAVALL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIHVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +T + C  C G G I+S      ++   ++  + +       +H H  V  YL     + 
Sbjct: 421 NTMETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYVAAYLNQGLMSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYVFYDSHGEEIDMKEE 520


>gi|157375769|ref|YP_001474369.1| ribonuclease [Shewanella sediminis HAW-EB3]
 gi|157318143|gb|ABV37241.1| ribonuclease, Rne/Rng family [Shewanella sediminis HAW-EB3]
          Length = 1201

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 201/647 (31%), Positives = 319/647 (49%), Gaps = 21/647 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  ++      
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+K  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     LEVP GMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAAMSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLE 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  ++E +    AP L+++E N+I RAIRD   +D+ E+++   + + +AK  + L+ 
Sbjct: 189 HHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVALVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   ++QY+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+E+ARQLRLRDL GL+V+DFIDM   ++ R VE ++++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVVRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
               +  + +K+    +A  Y+                 S  +++++     ++      
Sbjct: 489 KDDQISESSYKLLDQPEAKLYEPRKLERAAPPQPALKGFSAPVKEVEKPSSIKKDVKTES 548

Query: 630 KRRRRRR---------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
           K+                      +            D  +  N  +   +      D  
Sbjct: 549 KKDAEPGLISKLFSAISALFKPEEKKEEPKKKPQSNRDSQNRNNRRNTRRNDNRRNRDDK 608

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           +    +   +   ++ D +       ++   +  +    +     +R
Sbjct: 609 DQASDKGARNSRNKSADSAKSDKVEKQVRGKDEQAKRQSRNDSKSRR 655



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +RHGFLP  EI  +Y+
Sbjct: 62 ADRHGFLPLKEIAREYF 78



 Score = 40.7 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 38/144 (26%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
              +    +   +  AP    +I+     +A      S    +++     E+      +R
Sbjct: 759 TETLEAKVEAKVEQTAPVAVDSIQTTPVTDADQVEISSSEEVEVEATDDKEQREPREGQR 818

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           R RR  R             D     +       +  E       N  +  +   +    
Sbjct: 819 RSRRSPRHLRAAGQRRRRDEDTEGESSSDAAPAFVSNETEVENQANETKAASVAVSTPAQ 878

Query: 692 VSIPPVSTPEMESSNSSSDPIVKK 715
              P +   + + +++       K
Sbjct: 879 PETPEIPAEDTQKADTEVKSEATK 902


>gi|91789510|ref|YP_550462.1| ribonuclease E [Polaromonas sp. JS666]
 gi|91698735|gb|ABE45564.1| RNAse E [Polaromonas sp. JS666]
          Length = 1041

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 187/517 (36%), Positives = 283/517 (54%), Gaps = 1/517 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  I +VI+  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQYFAQGVPVSQARINDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEAMDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +           L+Y+E +L+ RAIRD +  DI +I+   +  Y +A+ FM  +MP
Sbjct: 189 LWTAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQARQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR+R ++ E  +  C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRVIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+ +  +++     DV  +LLN+KR+ I + E +  +++ +V    L    + +E+   
Sbjct: 429 SLKDSTASVLCQVPVDVASFLLNEKRSEIGKIELKQRINVLLVPNKTLETPNYRLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
               ++        +        +    Q++     P
Sbjct: 489 DDPRLDNIEASYKLADEVEDPTTVTRRSQEKHNKQEP 525



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML++A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLVNATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+       QA + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFAQGVPVSQARINDVIREGQELLVQVEKEERGN 110


>gi|326562172|gb|EGE12500.1| ribonuclease E [Moraxella catarrhalis 7169]
          Length = 1164

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 199/555 (35%), Positives = 303/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ +  E  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P+  P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPIPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|296113831|ref|YP_003627769.1| ribonuclease E [Moraxella catarrhalis RH4]
 gi|295921525|gb|ADG61876.1| ribonuclease E [Moraxella catarrhalis RH4]
          Length = 1164

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ +  E  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKSDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P   P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|17546916|ref|NP_520318.1| ribonuclease G [Ralstonia solanacearum GMI1000]
 gi|17429216|emb|CAD15904.1| probable ribonuclease g (rnase g) (cytoplasmic axial filament
           protein) [Ralstonia solanacearum GMI1000]
          Length = 489

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 138/567 (24%), Positives = 233/567 (41%), Gaps = 83/567 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1   MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   +I HP                                  D       +
Sbjct: 60  IGLERAAFLHVADIWHP------------------------------REAKDAPAAPHVA 89

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
           +E+             +  I      +S    + G +   +P    +   I    K    
Sbjct: 90  IEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLP----QDPHIGISQKIGN- 144

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
              +  +E    +              + ++P   +G  I R I      + L      L
Sbjct: 145 ---ETDREALRQRV-------------TRMVPADERGGFIVRTIAEEATDEELANDVAYL 188

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                                              +R  A    AP ++Y++ NL +R +
Sbjct: 189 RKIW-----------------------------ATIRHNATTLPAPSILYQDLNLAQRVL 219

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD    D   I +   + Y++  +F +   P+    +  Y    PIF    IE +++   
Sbjct: 220 RDFVTDDTRSIQIDSRENYQKLIEFAQEYTPAVVERLTHYTGERPIFDLYNIEAEVERAL 279

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L
Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDME  ++  +V  +L+ +L +DR R+ V + S  GL+EM+R+R R S+   
Sbjct: 340 GGIIIIDFIDMESGEHRDAVLAELRRALARDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C+G G +++  +V   ILR +     Q+      +     V+   L ++   +
Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459

Query: 540 VEYEARFGVSINVVIGI-ELADKLFYI 565
                  G  I++ +     + + + I
Sbjct: 460 AMLGDFIGKPISLQVESAAASQEQYDI 486


>gi|326564464|gb|EGE14690.1| ribonuclease E [Moraxella catarrhalis 46P47B1]
          Length = 1161

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ +  E  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P   P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|300716226|ref|YP_003741029.1| ribonuclease E [Erwinia billingiae Eb661]
 gi|299062062|emb|CAX59178.1| Ribonuclease E [Erwinia billingiae Eb661]
          Length = 1277

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 189/530 (35%), Positives = 285/530 (53%), Gaps = 9/530 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPSNYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + M+ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPEGMGLIVRTAGVGKSAEALQWDLSFRMKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           WD +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WDAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+D+IDM   ++ R+VE +L+E++++D
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVENRLREAVRQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + +  
Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMQTPHYSVLRVR 490

Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             +      + +        +     E   +     P   +  + D    
Sbjct: 491 TGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPDAPPA 540



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEISREYF 78


>gi|326568396|gb|EGE18476.1| ribonuclease E [Moraxella catarrhalis BC7]
          Length = 1164

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 199/555 (35%), Positives = 303/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ +  E  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P+  P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPIPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|326574311|gb|EGE24258.1| ribonuclease E [Moraxella catarrhalis O35E]
          Length = 1164

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 200/555 (36%), Positives = 304/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ + GE  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDGENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P+  P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPIPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|148652291|ref|YP_001279384.1| ribonuclease [Psychrobacter sp. PRwf-1]
 gi|148571375|gb|ABQ93434.1| RNAse E [Psychrobacter sp. PRwf-1]
          Length = 1368

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 199/582 (34%), Positives = 311/582 (53%), Gaps = 29/582 (4%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R+  I+++IK    L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN  KG  ISR+I
Sbjct: 81  NPREENIRKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPKGGGISRQI 140

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
           +  +     + +   L++P GM VI+RTAG  +T+ +++ D  +L+ +W+ +++      
Sbjct: 141 SGKLREDMKR-MLGNLDLPKGMSVIVRTAGIGKTQEDLQHDLNHLLNIWNAIQDQNKKYA 199

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           +P LV++E  ++ RA+RD    DI+EI +  E+ + EA+ F+K +MP+    +R+Y D  
Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEAETFIKAVMPTQIDKLRKYTDFE 259

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           P+F    +E Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+   + +TA  TN
Sbjct: 260 PMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGADVAETAYHTN 319

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L E+ K DRARVQ G IS FG
Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVEKRLVEATKYDRARVQFGEISRFG 379

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L+EMSRQR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     +    
Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQTALKERHGEVQAEV 439

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI------------EKGSPV 571
            +D+  +LLN+KR ++V  E   G  I ++    L    F I            E+ +  
Sbjct: 440 PTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHLESPNFNIHFNHHGFAPASYERVTDT 499

Query: 572 QALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
           Q    +G     D   A S     + V Q     P   +++ +  +    +        K
Sbjct: 500 QQQETSGLGYEVDWQTAESERPEQQPVRQPRKTAPQASADTSKPAEAAKAATPVANTAAK 559

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            ++    +           +S++ +       S  +    +      ++  GA       
Sbjct: 560 PQQPAEAQVEQAKPAAVAWLSNLFAPTPQAQMSATVSSADAAQAIEAIVNTGAQSRGAFG 619

Query: 691 D---------------VSIPPVSTPEMESSNSSSDPIVKKTR 717
                            + P  +    E +NS+ D      +
Sbjct: 620 QVSAAPAAAPVASATVAAKPASAPTASEQANSADDTETDNDK 661



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++LI+A+H EE RV + + N + + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2   KRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             R GFLP  EI  +Y  +  + R+  +++      +     +    G+
Sbjct: 62  SKRQGFLPVREIASEY--LSGNPREENIRKLIKEGDELIVQVEKEERGN 108


>gi|326576219|gb|EGE26134.1| ribonuclease E [Moraxella catarrhalis CO72]
          Length = 1164

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ +  E  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P   P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|326566215|gb|EGE16367.1| ribonuclease E [Moraxella catarrhalis 103P14B1]
          Length = 1164

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK    ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN  K   ISR+I+  V  
Sbjct: 87  IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  K+I  GL +P  M VI+RTAG  +   +++ D ++L+ +W +++E      +P LV+
Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E  ++ RA+RD    DI E+ +  E  Y EA +F+K +MP+    +R+Y D  P+F R 
Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+   + +TA  TNLEAA+E
Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ   IS FGL++MSR
Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     I     +D+  
Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           +LLN+KR ++V  E   G  I ++    L    F +                  D  APS
Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
             + I    + E +    +     D + +  +       +  ++      P     +   
Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551

Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700
           V+ +S       Q  +  S            + N   +  GA G   N    S  P   P
Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611

Query: 701 EMESSNSSSDPIVKK 715
           + E          KK
Sbjct: 612 QAEDKRHKKSRNAKK 626



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A+H EE RV + +DN + + D E+  ++Q K NIY   +TRVEPSL+AAFV+YG
Sbjct: 2  KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFLP  EI P+Y
Sbjct: 62 SARQGFLPLREIAPEY 77


>gi|70729171|ref|YP_258907.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens Pf-5]
 gi|68343470|gb|AAY91076.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens Pf-5]
          Length = 1087

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 223/664 (33%), Positives = 327/664 (49%), Gaps = 48/664 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 28  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 88  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 266

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E L+ DRAR
Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 386

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++    L    F +++      
Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 506

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------------------------ 609
             NT       + A +  + ++       L+    +                        
Sbjct: 507 EANTNQSSYEIAAAAAEAEEVQPTAATRTLVRQEAAVKTAPARANAPVPTEVVAAPVAAP 566

Query: 610 --------------------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                                + E+    +V E+       R    +RR       +   
Sbjct: 567 APVAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPVTERPARSNEEQRRNGRQQSRNRNG 626

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
             D            +      +     + E          +   P     E +      
Sbjct: 627 RRDEERKPREERAPREERAPREERQPREVREAREEVQAVAREERAPRAPREERQPRAPRE 686

Query: 710 DPIV 713
           +   
Sbjct: 687 ERKP 690



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 18  KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 78  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122


>gi|320327713|gb|EFW83721.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 1110

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 608 RRDEERKPREERAPREERAERAPREERATREERAPREERAPREERTVREPREAREDSAPR 667

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 668 EERPARTSRERKPREAR 684



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|160900714|ref|YP_001566296.1| ribonuclease [Delftia acidovorans SPH-1]
 gi|160366298|gb|ABX37911.1| ribonuclease, Rne/Rng family [Delftia acidovorans SPH-1]
          Length = 1044

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 201/660 (30%), Positives = 313/660 (47%), Gaps = 28/660 (4%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  I EVI+  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQYFAEGVSPSQARINEVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  RT  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRTAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ +   A ++    L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM+ +MP
Sbjct: 189 LWNAIDGAAKSAKGAFLIYQESSLVIRAIRDYFNGDIGDILIDTDDIYEQAQQFMQHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVSIDVNS R+ 
Sbjct: 249 EHAARVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSIDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR++ ++ E     C  C G+G++R   S AL ILR ++E 
Sbjct: 369 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHVRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            ++     +      +V  +LLN+KR  I + E +  V++ +V    +    + +E+   
Sbjct: 429 SMKDNTAAVHCQVPVEVASFLLNEKRGEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
               + +       ++    +  +    Q+      P  + +       ++E      R 
Sbjct: 489 DDVRLESMEASYKLAEELDAETTVTRRSQEPTNKQTPMIKGVLPDMPAPIAEPRPEGSRN 548

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVID---------------------------DS 663
           R    ++R        A     V+ +                                  
Sbjct: 549 RPANGQQRDAKPAATAAAPAPAVAPVVVREQGFFAWLKSLFGFSAAPAPVAAPAPAAEAP 608

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                      N            E  + +      P  E    + D   +     +R +
Sbjct: 609 AREARRDGRNDNRGRRNERNGERGERSERNGERAGAPNAERQAGNGDRNRRNAERGERTE 668



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + E      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFAEGVSPSQARINEVIREGQELIVQVEKEERGN 110


>gi|331012622|gb|EGH92678.1| ribonuclease E [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1110

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 668 EERPARTSRERKPREAR 684



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|189501611|ref|YP_001957328.1| Rne/Rng family ribonuclease [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497052|gb|ACE05599.1| ribonuclease, Rne/Rng family [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 516

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 150/576 (26%), Positives = 266/576 (46%), Gaps = 60/576 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA +++I A   +  R+  L+D  + E   E +  K   G+IYL  V ++  +L A+FVD
Sbjct: 1   MALELVISAVQ-DGFRIAFLKDGALIEYQTEEKDTKFTVGDIYLGTVKKLAHNLNASFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P +Y I    + A+                            +  
Sbjct: 60  IGYKKVAFLHYSDLGPQFYSISKFTQLAI----------------------------NGQ 91

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +   + +F+ E   + +   ++ +  N   +   + E +  K  R              
Sbjct: 92  VKDYKLNDFTLEPPIDKLGKVSDVIHKNQPILVQIAKEPISNKGPR-------------- 137

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                          ++  L+LAGRY +L+P  ++   +S++ITN  +R+ L  +   ++
Sbjct: 138 ---------------LSAELALAGRYMILVP-VNQTVNVSKRITNSEERQRLLRLVSSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G+I+RTA   +   ++ +D + L+  W+   +   ++V    V  E N     +R
Sbjct: 182 PA-NFGLIIRTAAEGKEVAKLVQDLKELLEKWEAGIKALSHAVPRDKVIGEINRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +    I++     Y E K ++K + P   +IV+QY+    +F   GIE QL  L  
Sbjct: 241 DMLSEKFDNILIDDPTAYSELKQYIKTIAPEKEKIVKQYQGKVKLFEHLGIEKQLKLLFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V++   GY+II  TEA+  IDVNSG S  E   E+ AL  NL AA+EIARQLRLRD+ 
Sbjct: 301 QTVSIEGGGYLIIEHTEAMHVIDVNSGNSAIEKDHEEMALSINLAAAKEIARQLRLRDMG 360

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IV+DFID+ + +N R + + +KE + +DR++V V  +S FGL++++RQR+R      T
Sbjct: 361 GIIVIDFIDIRDPENKRKIYQAMKEYMSEDRSKVTVLPLSKFGLMQITRQRVRPVTNLIT 420

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C G G I     +A  I +S++  L      +I +  H  +  Y      +  +
Sbjct: 421 QEQCPTCDGTGKISPSILIADQIEKSIQLLLTTQNEESITLFVHPYLYAYFTAGFFSRRL 480

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576
           ++  ++   IN+     L    +        +  ++
Sbjct: 481 KWLLKYKKWINLAEDSSLGITEYKFINKQNEEIELS 516


>gi|218890825|ref|YP_002439689.1| ribonuclease E [Pseudomonas aeruginosa LESB58]
 gi|218771048|emb|CAW26813.1| ribonuclease E [Pseudomonas aeruginosa LESB58]
          Length = 1057

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 217/621 (34%), Positives = 317/621 (51%), Gaps = 6/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTA   R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREGLNGLNAPADMGLIVRTASLGRSTEELQWDLDYLLQLWS 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    +  + V     L+    +      Q          V   +  
Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+ +          ++     E     +        +   +  D +
Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608

Query: 694 IPPVSTPEMESSNSSSDPIVK 714
                    E          +
Sbjct: 609 RRDEERKPREERAERQPREER 629



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106


>gi|254508495|ref|ZP_05120614.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16]
 gi|219548607|gb|EED25613.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16]
          Length = 996

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 195/639 (30%), Positives = 317/639 (49%), Gaps = 20/639 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     Y  A + ++L+ P 
Sbjct: 188 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+++++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   E+    F + +    
Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSEMETPHFDVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629
           +      + +         +   E   ++ + +     +  E +       ++ +    +
Sbjct: 488 EEFDLLSYLL-----PKKLEAMKEAEGREVSEVDAKPKKLEEPVLKGFASPAQSAPTPPK 542

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSI-------QNVIDDSFDMYMEPSDITNHNLLENG 682
              + +  +    +    G+VS                ++  +     SD  +       
Sbjct: 543 PTPKAKESKPAIAEESKPGLVSRFFKALGSFLFGSGAEEEKVEEKQAKSDKKDGQRNNRN 602

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                +N   +         + +        +K +    
Sbjct: 603 RRNRNDNRRRNSRDNRNENRKDNRDDKRDNKRKPQSRDE 641



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106


>gi|296388531|ref|ZP_06878006.1| ribonuclease E [Pseudomonas aeruginosa PAb1]
          Length = 1054

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 9   EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 188 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 428 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    +  + V     L+    +      Q          V   +  
Sbjct: 488 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 545

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+ +          ++     E     +        +   +  D +
Sbjct: 546 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 605

Query: 694 IPPVSTPEMESSNSSSDPIVK 714
                    E          +
Sbjct: 606 RRDEERKPREERAERQPREER 626



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 103


>gi|262374096|ref|ZP_06067373.1| ribonuclease E [Acinetobacter junii SH205]
 gi|262311107|gb|EEY92194.1| ribonuclease E [Acinetobacter junii SH205]
          Length = 1119

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 206/574 (35%), Positives = 321/574 (55%), Gaps = 11/574 (1%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILSSLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQSSASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E    V + V+    L    + I+      
Sbjct: 430 RERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSNVRVTVLPHPHLETPHYQIQ------ 483

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                G    S  +  +   + + +  + +   + +++          +        + +
Sbjct: 484 -FNPDGFAPSSYERTEATRSSEKELGYESSDWHLEEADHSHPAAPAQNATAPQKKAHQAQ 542

Query: 633 RRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
             + +   AT    A   + + ++   +           + +      ++ NGA    + 
Sbjct: 543 AAQAKPAQATVQKSASPCAWLENLFVQKQAQTTDQSRSAQNAAAAIEQMINNGAVSRGQF 602

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             V+IP  +  E  +  S++  I +     + R+
Sbjct: 603 GQVNIPAPAAVETPAPASNNAYISQAPAKQEARE 636



 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y++
Sbjct: 62 AQRQGFLSMREIANSYFK 79


>gi|39998329|ref|NP_954280.1| ribonuclease G [Geobacter sulfurreducens PCA]
 gi|39985275|gb|AAR36630.1| ribonuclease G [Geobacter sulfurreducens PCA]
          Length = 531

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 149/565 (26%), Positives = 252/565 (44%), Gaps = 68/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MAN+++I+ S   ETR+ ++ +  + EL  E   +K I GNIY  +V RV P +QAAFVD
Sbjct: 32  MANELVINTS-SHETRIALIENGTIAELYIERSREKGIVGNIYKGRVVRVLPGMQAAFVD 90

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++             A+ +     + + E    +        P +  L
Sbjct: 91  IGLEKAAFLYVADV-----------FDAMEEFETFMEVNGEESDSERQVLHPLHPIEELL 139

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +E   I     +    +                 G+          ++ +     +   +
Sbjct: 140 QEGQEILVQVSKEPIGT----------------KGARITSHVSLPGRHLVYMPTVDHVGV 183

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +   +      AG           G  I R        ++L      L 
Sbjct: 184 SRRIEDEPERERLKEIVGKAKPAG-----------GGFIVRTAAEGKTEEDLVADMNYLT 232

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                           + V      + AP L++ + ++ ++ IR
Sbjct: 233 KLW-----------------------------EEVVRRNEKAHAPCLIHADLDVTQKVIR 263

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +++S I+V     + +   F+   MP     +  Y+D  PIF   G+EV++     
Sbjct: 264 DILTENVSRIVVDSRHEHDKIVQFISTFMPKMKYSMELYDDEEPIFDHFGLEVEISRALG 323

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR++ 
Sbjct: 324 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 383

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+E++K D+++  +  IS+ GL+EM+R+R+R S+    
Sbjct: 384 GIIIIDFIDMEKEVNREKVFTALEEAMKADKSKTNILKISDLGLVEMTRKRVRESIGRMM 443

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+++V   I R +   +L      +++  H  V   L +++R  + 
Sbjct: 444 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKVMLTVHPQVADLLYDEERRGLE 503

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E +F   I V        + F I
Sbjct: 504 ELEKKFKKRITVRAKPGFHQEQFEI 528


>gi|319941547|ref|ZP_08015873.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B]
 gi|319804917|gb|EFW01759.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B]
          Length = 1169

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 196/546 (35%), Positives = 293/546 (53%), Gaps = 33/546 (6%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+E I   Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  +   +SR+I     +
Sbjct: 89  IKEAIHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEERQ 148

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL----------- 278
           + L+E    L++P GM  I RTAG  RT  E++ D  YL++LW+ + +            
Sbjct: 149 E-LREAMDRLKLPNGMSTIARTAGIGRTTEELQWDLNYLLKLWEAITDAARPVYEYPTEN 207

Query: 279 ----------------ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
                              + AP L+ EE NL+ RAIRD +  +I EI+V  +  Y +A+
Sbjct: 208 GHTKLLPEAQINGKKGKRANPAPFLIVEESNLVVRAIRDYFQPEIGEILVDTDDIYEQAR 267

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            FM  +MP     V++Y D  P+F R  IE Q+++ +   V LPS G ++I+ TEALV+I
Sbjct: 268 QFMAHVMPDMVDRVKRYRDDIPLFTRFQIEQQIETAYSRTVPLPSGGAIVIDHTEALVAI 327

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNS R+TR   IE+TA +TN EAA+E+ARQ+RLRDL GLIV+DFIDM E KN R+VE++
Sbjct: 328 DVNSARATRGADIEETAFKTNCEAADEVARQMRLRDLGGLIVIDFIDMAEAKNQRAVEQR 387

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           LK++++ DRARVQ   IS FGL+E+SRQR+R S+ E +   C  C G G IR   S A+ 
Sbjct: 388 LKDAIRYDRARVQTAKISRFGLMELSRQRLRPSLSEGSHITCPRCNGVGVIRDTESCAIQ 447

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
           +LR ++E  ++    ++      DV  +LLN+KR  I + EAR  V I +V    L    
Sbjct: 448 VLRILQEEAMKEGTGSVRAQVPVDVATFLLNEKRNDITKLEARHRVPIVLVPNTSLETPH 507

Query: 563 FYIEKGSPVQA--LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           ++IE+         V       +++     D       Q+E  L   +   ++++ +   
Sbjct: 508 YHIERIRQDDERLEVQEPSFKLAETIETVADDPYAQKSQEEKPLRPKQVPVIKNLIERDP 567

Query: 621 SEESTGVIRKRRRRRRR---RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
           +   T   +K  ++      ++         +   +        D+     E S  TN +
Sbjct: 568 APVQTAESKKAEQKANAGRVKQLQPVEPKKSLFKRIIGFFLGTSDNKAEQSEKSAKTNKS 627

Query: 678 LLENGA 683
             +   
Sbjct: 628 SQKKDR 633



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML +A+H EETRV ++   ++ ++D E+  ++  K NIY+  VTR+EPSL+A F+DYG
Sbjct: 2   KRMLFNATHPEETRVGIVDGQKLIDIDIETAGREARKSNIYMGVVTRIEPSLEACFIDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF EI   Y+      R A +KE+     +     +    G+
Sbjct: 62  EERHGFLPFKEISRSYFAEGVDVRLATIKEAIHEGQELIVQVEKEERGN 110


>gi|298486211|ref|ZP_07004274.1| Ribonuclease E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159218|gb|EFI00276.1| Ribonuclease E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 1129

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 28  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 88  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 266

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 507 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 566

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 567 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 626

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 627 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSTPR 686

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 687 EERPARTSRERKPREAR 703



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 18  KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 78  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122


>gi|114704663|ref|ZP_01437571.1| Ribonuclease E and G [Fulvimarina pelagi HTCC2506]
 gi|114539448|gb|EAU42568.1| Ribonuclease E and G [Fulvimarina pelagi HTCC2506]
          Length = 1013

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 376/619 (60%), Gaps = 2/619 (0%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR+    E   +       +           + +         +   +++ +      ++
Sbjct: 215 DREN--DEEEASSDGEGRRSKRSARRKRGRRSSNRGRGRHDSDDKEVDSDNDGDDDNGDE 272

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
           V     +           + ++ Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAG
Sbjct: 273 VDEIGSEDALEEVPVRQARPRKNYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAG 332

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RYSVLMPNT++G  ISRKITN  DRK L+++ + L+VP GMG+ILRTAGA+RTK E+KRD
Sbjct: 333 RYSVLMPNTARGGGISRKITNQADRKRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRD 392

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           +EYLMRLW++VR L L S+AP LVYEEG+LIKR+IRDL+ KDI +I+VSGE GYREAKDF
Sbjct: 393 YEYLMRLWESVRTLTLQSIAPSLVYEEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDF 452

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           M++LMPS A+ V+ Y D  PIF R GIE QLD + Q  VTL S GY+IINQTEALV+IDV
Sbjct: 453 MRMLMPSQAKAVQPYRDATPIFTRQGIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDV 512

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           NSGRSTRE  IE+TA QTNLEAAEEIARQLRLRDLAGLIVVDFIDM+EK+NNR+VEKK+K
Sbjct: 513 NSGRSTREMSIENTAYQTNLEAAEEIARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMK 572

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + LK DRAR+QVG IS+FGL+EMSRQRIR+SVLEST + C  C+GAG +R+ SS+AL  +
Sbjct: 573 DCLKNDRARIQVGKISHFGLMEMSRQRIRASVLESTMRPCPVCEGAGMVRATSSLALHAI 632

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R +E+YL +    ++IV   ++  L++LN+KR  I E E    + I +     +      
Sbjct: 633 RHIEDYLQKNKGRDLIVKVPTETALFILNEKRHHIDELEQNHDLRIFIEADPSVGHNDLS 692

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           IE+G      +           A       E    + +      SE+ +D + +  + E 
Sbjct: 693 IEQGGVASRPITRNFVSPISVAAEDAVDEDEDADVEISEEETGTSEARDDSESSDDNNEG 752

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               R RRRRRRR     D ++ G     +S  +          +     +         
Sbjct: 753 RSKGRGRRRRRRRGGSDGDDNENGGNEQQASDSSNASSDDVDNSDDESQDSDGSSGRRRR 812

Query: 685 GFTENYDVSIPPVSTPEME 703
                        +  + E
Sbjct: 813 RRGRRGGRRHRDGNDKQAE 831



 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/157 (52%), Positives = 102/157 (64%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MANKMLID+SH EETRVVV+R NRVEE DFESEHKKQ+KGNIYLAKVTRVEPSLQAAF++
Sbjct: 1   MANKMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGG RHGFL F EIHPDYYQIP +DR+ALL E        E   ++         +  + 
Sbjct: 61  YGGGRHGFLAFSEIHPDYYQIPKADREALLAEEMARGQADEEDEEEEREVKRKSRSKAAR 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157
            E     + S++ E E  +  + +   + +  +    
Sbjct: 121 REDKSDESVSEDAEAEGGLRDDLNDSDDADSERRNED 157


>gi|330985583|gb|EGH83686.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 1112

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 668 EERPARTSRERKPREAR 684



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|15598172|ref|NP_251666.1| ribonuclease E [Pseudomonas aeruginosa PAO1]
 gi|9949075|gb|AAG06364.1|AE004723_8 ribonuclease E [Pseudomonas aeruginosa PAO1]
          Length = 1057

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    +  + V     L+    +      Q          V   +  
Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+ +          ++     E     +        +   +  D +
Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608

Query: 694 IPPVSTPEMESSNSSSDPIVK 714
                    E          +
Sbjct: 609 RRDEERKPREERAERQPREER 629



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106


>gi|127512522|ref|YP_001093719.1| ribonuclease [Shewanella loihica PV-4]
 gi|126637817|gb|ABO23460.1| RNAse E [Shewanella loihica PV-4]
          Length = 1128

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 315/641 (49%), Gaps = 20/641 (3%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
            ++    A+ D     D+ I +    ++ A I        E S+ +A  D  +       
Sbjct: 10  QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                         F+ +  I+EV+K  Q ++VQI KEERGNKGAA+TT++SLAG Y VL
Sbjct: 70  LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LK     LEVP GMG+I+RTAG  +   E+K D + L 
Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAAMSELEVPQGMGLIVRTAGVGKDAAELKWDLKVLQ 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             W  + E A N  AP L+++E N+I RAIRD   +D+ E+++  ++ Y +AK  + L+ 
Sbjct: 189 HHWAAIEEAAQNRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQAKQHVALVR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   +++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+
Sbjct: 249 PDFVDRIKRYEAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE ++++++  
Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGL+EMSRQR+R S+ ES   +C  C G G IR   S+ALSILR +EE
Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             ++     I      DV  +LLN+KR  I   E R  V + V+    +    + + +  
Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVTRHR 488

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +  + +K+    ++  Y+    E     E  L    +   +       +       
Sbjct: 489 KDDQISESSYKLLEQPESKLYEPRKLERAASPEPALKGFSTPVKDAPTQAAPAPAKPAEK 548

Query: 629 RKRRR-------------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
            +                     +P  +        +  +  +  ++  +   +  D   
Sbjct: 549 AQEPGLIAKLFAAIGKLFGGEPEQPKEEVKKEQPRRNAQNRNSRRNNRRNDTRKSRDEGK 608

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +       ++ D         + +  +    P  +  
Sbjct: 609 ETDNKRSRSAKPDDADSRSAKSRNEKRQKRDRDDKPQSQSK 649



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|226951904|ref|ZP_03822368.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter sp. ATCC 27244]
 gi|294649163|ref|ZP_06726604.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194]
 gi|226837444|gb|EEH69827.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter sp. ATCC 27244]
 gi|292824961|gb|EFF83723.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194]
          Length = 1143

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 201/557 (36%), Positives = 304/557 (54%), Gaps = 5/557 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 91  REIANSYFKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 150

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L +P GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 151 NPKGGGISRQISGSVREE-LKEILATLNIPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 209

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A    +P LV++E  ++ RAIRD    D+ EI++  E+ Y EA +F+K +MP  
Sbjct: 210 AQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEAYNFVKAVMPRQ 269

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 270 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 329

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA
Sbjct: 330 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 389

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 390 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 449

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E    V + V+    L    + I+      
Sbjct: 450 RERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSNVRVTVLPHPHLETPHYQIQYNPAGF 509

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A  +      + S              ++A          +       + +      K+ 
Sbjct: 510 APSSYERTEATRSSEKELGYESSEWHLEDAEHVHAAPAQAQTAAPQKKTAQPQAAQPKQA 569

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +                + ++   +           + +      L+  GA    +   V
Sbjct: 570 Q----VPAQKSASPCAWLENLFVQKQAQTIDQSRSAQNAAAAIEQLVNGGAVSRGQFGQV 625

Query: 693 SIPPVSTPEMESSNSSS 709
           + P V+     +S +++
Sbjct: 626 NTPVVTETPAPASTTNN 642



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 22 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 81

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y++
Sbjct: 82 AQRQGFLSMREIANSYFK 99


>gi|107102525|ref|ZP_01366443.1| hypothetical protein PaerPA_01003589 [Pseudomonas aeruginosa PACS2]
          Length = 1054

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 9   EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 188 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 428 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    +  + V     L+    +      Q          V   +  
Sbjct: 488 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 545

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+ +          ++     E     +        +   +  D +
Sbjct: 546 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 605

Query: 694 IPPVSTPEMESSNSSSDPIVK 714
                    E          +
Sbjct: 606 RRDEERKPREERAERQPREER 626



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 103


>gi|71734954|ref|YP_273875.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555507|gb|AAZ34718.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1129

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 28  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 88  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 266

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 507 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 566

Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                                A    P +  + +              R  R++ R R  
Sbjct: 567 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 626

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             +       +      +                    +    +  
Sbjct: 627 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 686

Query: 701 EMESSNSSSDPIVKKTR 717
           E   + +S +   ++ R
Sbjct: 687 EERPARTSRERKPREAR 703



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 18  KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 78  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122


>gi|148977657|ref|ZP_01814233.1| ribonuclease E [Vibrionales bacterium SWAT-3]
 gi|145963172|gb|EDK28440.1| ribonuclease E [Vibrionales bacterium SWAT-3]
          Length = 1053

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 199/660 (30%), Positives = 319/660 (48%), Gaps = 37/660 (5%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+K  Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLKEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     +  A+  ++L+ P 
Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +     A    ++ E    ++A+ P    E              T     +
Sbjct: 491 EEFDLLSYLLPKKLDALKEAESKEP--AEQAIRPKKIEEPALKGFAAPAQSAPTPAPAPK 548

Query: 632 RRRRRRRRPATDHH-----------------------------DAGVVSDVSSIQNVIDD 662
             + ++  P                                  +    ++ +  +   D 
Sbjct: 549 AAQEKKAEPVGQESGLIGRFFKAIGSFLFGSSTQEEKQEEKQTEEKPKNNRNGNRQRRDR 608

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           + +           N  +N  +                +     +      K+ R  K+R
Sbjct: 609 NDNRRRNQRGERGDNRNDNRDNKRRRKPVRDEKSEEQKDAAPQQNRQPRKPKQDRRNKQR 668



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLKEGQEVIVQVEKEER 109



 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 42/159 (26%), Gaps = 15/159 (9%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE------------- 613
           +    +   +   +     + P  D+  +   + +       S+  E             
Sbjct: 638 RDEKSEEQKDAAPQQNRQPRKPKQDRRNKQRDEQKQREEQAPSKLAEEGLQLAADAQAGK 697

Query: 614 -DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            D        ++  +  +R+RR+  ++       A   +  +S +     S       + 
Sbjct: 698 SDAPKAKPEAKAAKIKERRQRRKLNKQVRVKDQQAQADAAENSTKEQKAPSVSKEQAAAK 757

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
             +    +  A    E    +       E +   +   P
Sbjct: 758 NKSVAQEQKVAEQV-EATQANGEQSEQEEPKQRRNRRSP 795


>gi|152996326|ref|YP_001341161.1| ribonuclease [Marinomonas sp. MWYL1]
 gi|150837250|gb|ABR71226.1| ribonuclease, Rne/Rng family [Marinomonas sp. MWYL1]
          Length = 1071

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 203/572 (35%), Positives = 297/572 (51%), Gaps = 14/572 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             +        + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 74  SKTYFSKKSNHEGRINIKDVLSEGQEVIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNN 133

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I       +LKE   GL  P   G+I+RTAG  R+  E++ D +YL  LW 
Sbjct: 134 PRAGGISRRIDGDDRS-HLKEAMSGLNTPENGGLIVRTAGVGRSTEELQWDLDYLDTLWS 192

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           ++ + A    AP L+Y+E N++ RAIRD   +DI E+++  +  Y++A +F+  +MP + 
Sbjct: 193 SITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQDAINFVMQVMPHFK 252

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ Y D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 253 SRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARATKGG 312

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM   +N + VE ++K +L+ DRAR
Sbjct: 313 DIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVETRMKNALEADRAR 372

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ E++  VC  C G G+IR   S+ALS+LR +EE   +
Sbjct: 373 VQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLALSVLRLIEEECSK 432

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                I       V  +LLN+KR  I + E R  V I +V    +    F +E+      
Sbjct: 433 ERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNNVHIILVPNPHMETPHFEVERIRDDST 492

Query: 574 LVNTGHK-----VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +V+            +       K  E V    A+  I       +      +       
Sbjct: 493 VVSQNENSYTLVETPEQPPYEPRKANENVRPQAAVTSIAPKAPAPEHTAPAAATPKVVKA 552

Query: 629 RKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
           + +    +R         +             V+  QN  D S        +    N+  
Sbjct: 553 QDKPSLLKRIITALFGETQSKPKQKTVSKTPPVAPSQNDRDTSSKPNGNRVNRNKRNVKH 612

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
             A     N             E + S +   
Sbjct: 613 QNADRDDNNTAEKNRSTRQSRREQAESGTKGT 644



 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 55/76 (72%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G 
Sbjct: 3  RMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDFGA 62

Query: 64 NRHGFLPFLEIHPDYY 79
          +RHGFLP  EI   Y+
Sbjct: 63 DRHGFLPLKEISKTYF 78


>gi|116050978|ref|YP_790197.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586199|gb|ABJ12214.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1057

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    +  + V     L+    +      Q          V   +  
Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+ +          ++     E     +        +   +  D +
Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608

Query: 694 IPPVSTPEMESSNSSSDPIVK 714
                    E          +
Sbjct: 609 RRDEERKPREERAERQPREER 629



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106


>gi|302187287|ref|ZP_07263960.1| ribonuclease E [Pseudomonas syringae pv. syringae 642]
          Length = 1106

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 221/678 (32%), Positives = 325/678 (47%), Gaps = 62/678 (9%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAAPAPT 547

Query: 601 EALLPIPKSES-------------------------LEDIQDNIVSEESTGVIRKRRRRR 635
            A  P     S                          + + +   +        +++ R 
Sbjct: 548 PAPAPAAHEPSLFKGLVKSLVSLFASKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRG 607

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           R  R   +       +                 E         +        ++      
Sbjct: 608 RNNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREDSTPREER 667

Query: 696 PVSTPEMESSNSSSDPIV 713
           P  T        + +   
Sbjct: 668 PARTTRERKPREAREDRP 685



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|86147923|ref|ZP_01066227.1| ribonuclease E [Vibrio sp. MED222]
 gi|85834248|gb|EAQ52402.1| ribonuclease E [Vibrio sp. MED222]
          Length = 1041

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 202/667 (30%), Positives = 323/667 (48%), Gaps = 42/667 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV++  Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     +  A+  ++L+ P 
Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+++++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE--------------------S 611
           +      + + +  +A    ++ E   Q      I +                       
Sbjct: 491 EEFDLLSYLLPTKLEALKEAESKEPAEQTIRPKKIEEPALKGFAAPAQSAPTPAPAPKAV 550

Query: 612 LEDIQDNIVSEES----------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
            E   ++  ++E                 +    +++   ++     ++ + G       
Sbjct: 551 EEKKAESAATQEPGLVGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNRNNGNRQRRDR 610

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             N   +      E       N  EN  +           P    E     +      K+
Sbjct: 611 NDNRRRNQRGDRGEQRGERGDNRNENRDNKRRRKPVRDEKPEEQKETAPQQNRQPRKPKQ 670

Query: 716 TRWWKRR 722
            R  K R
Sbjct: 671 DRRNKSR 677



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 109


>gi|254241683|ref|ZP_04935005.1| ribonuclease E [Pseudomonas aeruginosa 2192]
 gi|126195061|gb|EAZ59124.1| ribonuclease E [Pseudomonas aeruginosa 2192]
          Length = 1057

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    +  + V     L+    +      Q          V   +  
Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+ +          ++     E     +        +   +  D +
Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608

Query: 694 IPPVSTPEMESSNSSSDPIVK 714
                    E          +
Sbjct: 609 RRDEERKPREERAERQPREER 629



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106


>gi|254235950|ref|ZP_04929273.1| ribonuclease E [Pseudomonas aeruginosa C3719]
 gi|126167881|gb|EAZ53392.1| ribonuclease E [Pseudomonas aeruginosa C3719]
          Length = 1057

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 218/621 (35%), Positives = 317/621 (51%), Gaps = 6/621 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I      ++ A I        E S+ +A  D  +       +K
Sbjct: 12  EELRVALVDGQRLFDLDIEAGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I+EV+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 72  EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +    AP L+Y+E N+I RAIRD   +DI E+++       EA +F++ +MP YA
Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V+ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE++++E+L+ DRAR
Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR  I + E R    I ++    L    F +++      
Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
            +       S   A    +  + V     L+    +      Q          V   +  
Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                         G+ +          ++     E     +        +   +  D +
Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608

Query: 694 IPPVSTPEMESSNSSSDPIVK 714
                    E          +
Sbjct: 609 RRDEERKPREERAERQPREER 629



 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD E+  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLFDLDIEAGAREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  + +  +  Q     V  + 
Sbjct: 62  AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106


>gi|46446951|ref|YP_008316.1| putative ribonuclease G (axial filament protein) [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400592|emb|CAF24041.1| putative ribonuclease G (axial filament protein) [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 512

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 162/562 (28%), Positives = 279/562 (49%), Gaps = 65/562 (11%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++L++    +ETR  +L++  + +L  E + ++Q+ GNIY  +V  +  ++Q+AF+D   
Sbjct: 3   EILLNI-ESKETRYALLKNGELRDLVVERKKERQLTGNIYRGRVKNILHNIQSAFIDINE 61

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
             +GF+   +I                        ++    + +   D  +  D      
Sbjct: 62  GENGFIHISDI-----------------------IENTKKFEQLFDMDFDLDYDIKALNE 98

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
               N   E                                         +K  Q +LVQ
Sbjct: 99  KEQQNLDIEQV---------------------------------------MKPDQPVLVQ 119

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKE  G+KGA +T+ +S+AGRY VL+PN+S    +SRKI + V R+ LK++ R  E+P 
Sbjct: 120 VVKEPIGSKGARLTSNVSIAGRYLVLLPNSSHRG-VSRKIEDRVARERLKKLIRAFEMPQ 178

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            MG+I RTA AS T+  +  +   L+  W  + E    +  P L+Y E +LIK+A+    
Sbjct: 179 DMGLICRTASASATQEMLIAEAHDLLHNWQTIMENFKKATEPTLLYAESDLIKKAVITAI 238

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            K    ++V     Y+  K         +A  +  Y D  P+F R  +E +++   + ++
Sbjct: 239 DKRYDRVLVDDYATYQTCKRLYSRYASEHALRIEYYRDKVPMFERFNVEREIEKTLRRKI 298

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGL 422
            LPS GY+  ++TEA+ +IDVNSGRS      +E++ ++ NLEAAEEI+RQLRLR++ GL
Sbjct: 299 WLPSGGYLYFDRTEAMYTIDVNSGRSNNNKTDVEESLVRINLEAAEEISRQLRLRNIGGL 358

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           ++ DFIDM  +KN R V ++LK+ +K+D A+  +  +S FGL+EM+RQR R S+L++   
Sbjct: 359 VICDFIDMRLRKNQRRVLERLKDCMKEDSAKCTILGMSEFGLVEMTRQRNRGSLLQTIFT 418

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
            C YC G+G I+S  S+++ I R+ ++ +  +    + +  H ++  YL    +  +   
Sbjct: 419 GCPYCAGSGIIKSHESLSIEIERAFKKIVAYHEQFALKLVVHPELDRYLNIIDKQYLFRL 478

Query: 543 EARFGVSINVVIGIELADKLFY 564
              +   +   +   L    + 
Sbjct: 479 ATDYNAHLTCEVDDRLHLNEYQ 500


>gi|260220729|emb|CBA28582.1| Ribonuclease E [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 990

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 198/668 (29%), Positives = 300/668 (44%), Gaps = 50/668 (7%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +                IQ+ I+  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQYFQQGVSASNARIQDAIREGQELLVQVEKEERGNKGAALTTFISLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKENMDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A  +    L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP
Sbjct: 189 LWGAIDGAAKGAKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDVYEQAQQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D  P+F R  IE Q++S +   VTLPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHAARVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRREVENRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR+R ++ E  +  C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+    +++     +V  +LLN+KR  I + E +  +++ +V    L    + +E+   
Sbjct: 429 SLKDNTASVLCQVPVEVASFLLNEKRTEIAKIELKQRINVLMVPNKTLETPNYKLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP----------------------- 607
               ++        +        +    Q+      P                       
Sbjct: 489 DDPRLDHIEASYKMADDMEEATGVTRRSQEPTNKQTPVIKGVLPDAPAPIAPPKPEPVKA 548

Query: 608 --------------------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
                                       E+           ++      R  R   R   
Sbjct: 549 APVPVAAPVATPASKGFLGWIKSLFAAPEAAPAPAVAPAPAKTDDKREGRNGRDGNRNGG 608

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            +             +N                N     NG     E  D          
Sbjct: 609 RNQRGDRGGEGRGEPRNEARPDNRGERSERGNRNERGERNGRGERGERQDRGNRNERGER 668

Query: 702 MESSNSSS 709
             +     
Sbjct: 669 NNAPRQER 676



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 66/109 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+Q   S   A ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFQQGVSASNARIQDAIREGQELLVQVEKEERGN 110


>gi|298507260|gb|ADI85983.1| ribonuclease G [Geobacter sulfurreducens KN400]
          Length = 500

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 149/565 (26%), Positives = 252/565 (44%), Gaps = 68/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MAN+++I+ S   ETR+ ++ +  + EL  E   +K I GNIY  +V RV P +QAAFVD
Sbjct: 1   MANELVINTS-SHETRIALIENGTIAELYIERSREKGIVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++             A+ +     + + E    +        P +  L
Sbjct: 60  IGLEKAAFLYVADV-----------FDAMEEFETFMEVNGEESDSERQVLHPLHPIEELL 108

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +E   I     +    +                 G+          ++ +     +   +
Sbjct: 109 QEGQEILVQVSKEPIGT----------------KGARITSHVSLPGRHLVYMPTVDHVGV 152

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +   +      AG           G  I R        ++L      L 
Sbjct: 153 SRRIEDEPERERLKEIVGKAKPAG-----------GGFIVRTAAEGKTEEDLVADMNYLT 201

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                           + V      + AP L++ + ++ ++ IR
Sbjct: 202 KLW-----------------------------EEVVRRNEKAHAPCLIHADLDVTQKVIR 232

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +++S I+V     + +   F+   MP     +  Y+D  PIF   G+EV++     
Sbjct: 233 DILTENVSRIVVDSRHEHDKIVQFISTFMPKMKYSMELYDDEEPIFDHFGLEVEISRALG 292

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR++ 
Sbjct: 293 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 352

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+E++K D+++  +  IS+ GL+EM+R+R+R S+    
Sbjct: 353 GIIIIDFIDMEKEVNREKVFTALEEAMKADKSKTNILKISDLGLVEMTRKRVRESIGRMM 412

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+++V   I R +   +L      +++  H  V   L +++R  + 
Sbjct: 413 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKVMLTVHPQVADLLYDEERRGLE 472

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E +F   I V        + F I
Sbjct: 473 ELEKKFKKRITVRAKPGFHQEQFEI 497


>gi|118594942|ref|ZP_01552289.1| probable ribonuclease E [Methylophilales bacterium HTCC2181]
 gi|118440720|gb|EAV47347.1| probable ribonuclease E [Methylophilales bacterium HTCC2181]
          Length = 759

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 206/680 (30%), Positives = 326/680 (47%), Gaps = 51/680 (7%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +   +          +    +              +    + + E + ++   D    + 
Sbjct: 7   QSEELRVAIVSDSKLEDLDFERGNREQRKSNIYKAVVTRVEPSLEAAFVNYGVDRHGFLP 66

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +        K  K+   I++VI   Q ++VQ+ K+ERGNKGAA+T+YLSLAGRY VLM
Sbjct: 67  FKEIAPEYYSKKSRKKDLSIKDVINEGQEIIVQVSKDERGNKGAALTSYLSLAGRYIVLM 126

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN + G  ISR+I         KE+   L V  G  VI RTAG   +  +I+ D +YL +
Sbjct: 127 PNNNDGGGISRRIEGEERSAF-KEVLSQLTVTKGTSVIGRTAGIGASVEQIQWDLDYLNQ 185

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+ +   A     P L+Y+E NL+ RAIRD +  DI E+++  ++ + +A  FM  +MP
Sbjct: 186 LWEAIENAANAQEGPFLIYQESNLVIRAIRDYFSADIEEVLIDKQEIFDQAHQFMSHVMP 245

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            YA  V+ YE+   +F +  IE Q++S    EV LPS G ++I+ TEALVS+DVNS RST
Sbjct: 246 DYAERVKLYEENISLFSKFNIENQIESAFLREVQLPSGGSIVIDHTEALVSVDVNSSRST 305

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA  TNLEAA E+A+Q+RLRD+ GL+VVDFIDME +KN R VE +++++LK D
Sbjct: 306 KGRDIENTAFNTNLEAASELAKQMRLRDIGGLVVVDFIDMEHQKNQREVENRMRDALKND 365

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           +AR+Q+G IS FGL+E+SRQR+R S+ +S   VC  C G G +R   S AL +LR +++ 
Sbjct: 366 KARIQLGKISRFGLMELSRQRLRPSLGDSINGVCPKCSGTGRVRDIQSTALYMLRLIQDE 425

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +     + +    +V   LLN+KRA I E E +    I ++         + IE+ S 
Sbjct: 426 AARDENQIVSIQLPVEVATLLLNEKRAAINELEEKTHNDIVIIPNRYFEIPKYLIERTSK 485

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVW-------------------------------- 598
               ++         +  + D+++E                                   
Sbjct: 486 KSGKISYTVVEPPVEELANGDEDVEKDKLTPVVKSVMPANSSTKKNKQTKSLLGFFKNLI 545

Query: 599 ---------QDEALLPIPKSESLE---DIQDNIVSEESTGVIRKRRRRRRRRRP---ATD 643
                     D A + I   E+++   D  +++    +     +R  R R R+P      
Sbjct: 546 GSDDSDANHDDRAQVEITSPETVKGNGDQLESVNENRTNSNSNRRPGRNRSRKPGFNKNQ 605

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSD--ITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                   + ++ Q  + +S ++  E +    T +   +       E     +  V   +
Sbjct: 606 QQRRERGGEDATPQPSVINSKEVAEENNVGIKTPNQRRDKPVERIIEKQQEIVSQVKEKQ 665

Query: 702 MESSNSSSDPIVKKTRWWKR 721
            +   S+  P  KK    KR
Sbjct: 666 SDELLSTK-PDPKKKPVRKR 684



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 60/75 (80%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML +A+  EE RV ++ D+++E+LDFE  +++Q K NIY A VTRVEPSL+AAFV+YG +
Sbjct: 1  MLFNATQSEELRVAIVSDSKLEDLDFERGNREQRKSNIYKAVVTRVEPSLEAAFVNYGVD 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLPF EI P+YY
Sbjct: 61 RHGFLPFKEIAPEYY 75


>gi|85713202|ref|ZP_01044231.1| RNase E [Idiomarina baltica OS145]
 gi|85692975|gb|EAQ30944.1| RNase E [Idiomarina baltica OS145]
          Length = 980

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 200/627 (31%), Positives = 315/627 (50%), Gaps = 12/627 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +       F  +  I++V++  Q ++VQI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAKTYFPDGYTFNGRPNIKDVVREGQEVIVQIDKEERGQKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I        LKE    + VP  MG+I+RTAG  ++K E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGEERS-ALKEALSEINVPKEMGLIVRTAGVGKSKEELEWDLNVLIHH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E A    AP L+++E N+I RA+RD   +DI E+++  +K + + +D ++L+ P 
Sbjct: 188 WTAISEAAQKRPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSKKVFEQVRDHIQLIRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V+ YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FVNRVKLYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TA QTNLEAAEEIARQLRLRD+ GL+V+DFIDM   ++ R VE +L++SL  DR
Sbjct: 308 GGDIEETAFQTNLEAAEEIARQLRLRDVGGLVVIDFIDMTPTRHQREVENRLRDSLAHDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+QV  IS FGLLEMSRQR+R S+ ES   +C  C G G IRS  S+ALSILR +EE  
Sbjct: 368 ARIQVARISRFGLLEMSRQRLRPSLGESANAICPRCSGQGTIRSSESLALSILRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       V  +LLN+KRA++++ E R  V   ++    +    F + +    
Sbjct: 428 IKDNTVQVQAQVPVSVATFLLNEKRASVIKIEERHNVKAVIIPNHHMDTPHFEVVRIRDD 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +  V          +    ++++      E       +           +       + +
Sbjct: 488 E--VPEAASFNQVQKPEQQEESVAITLTKERQQLEEPALKGLQAPTAPPAPTPQSQPKTK 545

Query: 632 RRR----RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                  +R  +  +       V +    +   +++       +   N+       +  +
Sbjct: 546 AGSVSLLKRISQWLSQLFGTDEVEEKQQPKPRNNNNQRRGRNNNQRRNNRNNGRRNNNRS 605

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVK 714
            N   S  P ++ + +  + S     +
Sbjct: 606 ANNRDSDKPNTSTDSKPQDKSKTENER 632



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+ +EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI   Y+
Sbjct: 61 RHGFLPLKEIAKTYF 75


>gi|328474605|gb|EGF45410.1| ribonuclease E [Vibrio parahaemolyticus 10329]
          Length = 1003

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 193/518 (37%), Positives = 289/518 (55%), Gaps = 6/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 188 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           +      + +    +A    +  E    D     I + 
Sbjct: 488 EEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEP 525



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106


>gi|146306650|ref|YP_001187115.1| RNAse E [Pseudomonas mendocina ymp]
 gi|145574851|gb|ABP84383.1| RNAse E [Pseudomonas mendocina ymp]
          Length = 1012

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 213/609 (34%), Positives = 313/609 (51%), Gaps = 10/609 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S         
Sbjct: 12  EELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSERHGFLPLK 71

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 72  EISREYFSKAPEGGRINIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW
Sbjct: 132 NPRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLW 190

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++E + +  AP L+Y+E N+I RAIRD   +DI E++V   +   EA  F++ +MP Y
Sbjct: 191 SAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQY 250

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  ++ YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+ 
Sbjct: 251 ASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKG 310

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E+L+ DRA
Sbjct: 311 SDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRA 370

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L
Sbjct: 371 RVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEAL 430

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +       V  +LLN+KR +I + E R    I ++    L    F +++     
Sbjct: 431 KDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDS 490

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                   +   +                           E          +      + 
Sbjct: 491 -----PEALSGQTSYEIAATAENEEAAAHPAAATRTLVRQEAAIKAAPRSSAPVAAEPQP 545

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
                 +        G+V  + S+    ++     +           E   +G  ++ + 
Sbjct: 546 APLTPTKAPEPSLFKGLVKSLVSLFAGKEEEAQPAVTEKKNNERPPREERRNGRQQSRNR 605

Query: 693 SIPPVSTPE 701
                   +
Sbjct: 606 GGRRDDERK 614



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 63/109 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  +Y+       +  +K+      +     +    G+
Sbjct: 62  SERHGFLPLKEISREYFSKAPEGGRINIKDVLKEGQEVIVQVEKEERGN 110


>gi|254429811|ref|ZP_05043518.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881]
 gi|196195980|gb|EDX90939.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881]
          Length = 1086

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 216/666 (32%), Positives = 335/666 (50%), Gaps = 34/666 (5%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+    +   D E    +    ++       +E     A             A
Sbjct: 8   PEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVD--------FGA 59

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                  ++++     +  PK  + +  I+EVIK  Q ++VQ+ KEERGNKGAA+TT++S
Sbjct: 60  ERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTFIS 119

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           LAGRY VLMPN  +   ISR+I      + LKE    L +P  MGVI+RTAG  R+  E+
Sbjct: 120 LAGRYLVLMPNNPRAGGISRRIEGEERAQ-LKEALGALTIPDEMGVIVRTAGLGRSAEEL 178

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  YL++LW ++ E + +  AP L+Y+E N+I RAIRD   KDI E+++  +K Y EA
Sbjct: 179 QWDLNYLLKLWTSIDEASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDEA 238

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F++ +M  +   ++ Y+D  P+F R  IE Q+++  + EV LPS G ++I+ TEALVS
Sbjct: 239 QGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALVS 298

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+NS R+T+   IE+TALQTNLEAAEEI+RQLRLRD+ GLIVVDFIDM   +N R VE 
Sbjct: 299 IDINSSRATKGADIEETALQTNLEAAEEISRQLRLRDIGGLIVVDFIDMGPARNQRDVEN 358

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +++++L+ DRAR+Q+G IS FGLLE+SRQR+R S+ E+++ VC  C G G+IR   S+AL
Sbjct: 359 RMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSLAL 418

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           SILR +EE +++     I       V  YLLN+KR  +   E    V + ++    L   
Sbjct: 419 SILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHNVRVVIIPNQNLDTP 478

Query: 562 LFYIEKGSPVQALVNTGHKVG---SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
            F +E+    Q      H++     +  A         +   E  + +   ++       
Sbjct: 479 HFEVERIRDDQTSTQLSHEMDLLEGNKDADIASAQDTEIKTQEPAVKLMAPDTAPPPPKP 538

Query: 619 IVSEE---------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
             +                       +      + ++ + +R   +       S      
Sbjct: 539 AAAAPTPQVQNLGLLARLFSWLAQVFTAEPKPAKAKKEQPQRKGDNKQRQQQNSRGGRGG 598

Query: 658 NVIDDSFDMYMEPS-DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           N  + + +   +      N N  + G  G  +N +      +  +    N +     + +
Sbjct: 599 NTRNRNDNRNNDNRGKNDNRNKRDGGKGGDNDNRNNRNKRQNDKDGGRKNDNRQADNRSS 658

Query: 717 RWWKRR 722
                R
Sbjct: 659 DNRDNR 664



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/106 (42%), Positives = 61/106 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+H EE RV ++   R+ +LD E   ++Q K NIY  K+TRVEPSL+AAFVD+G  
Sbjct: 1   MLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDFGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
           RHGFLP  EI   Y+Q    D Q  +    + +   E +       
Sbjct: 61  RHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEE 106


>gi|148977847|ref|ZP_01814402.1| ribonuclease G [Vibrionales bacterium SWAT-3]
 gi|145962916|gb|EDK28187.1| ribonuclease G [Vibrionales bacterium SWAT-3]
          Length = 489

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/565 (22%), Positives = 216/565 (38%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E + ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGTLQEIHIERDARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I P             + E+   Q     +++ V  G   +      
Sbjct: 60  IGLEKAAFLHASDIVPH---------TECVAENEKKQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E    + K+              
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSESERNRLKKV------------- 157

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
              +      + G  + T    A    +                        +   + LE
Sbjct: 158 ---VSHYCDEHGGFIIRTAAEGADSNELAQ----------------DAAFLKRLWLKVLE 198

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                    R  G       I R                                     
Sbjct: 199 RRGKHKARTRLYGELCLSQRILR------------------------------------- 221

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D    ++S+I V     Y   K+F    +P     +  YE   PIF     E ++     
Sbjct: 222 DFVGTELSKIQVDSRLEYENLKEFTSEYVPELTDKLELYEGDKPIFDMYDTENEIQRSLD 281

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+QTEA+ ++D+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  + + + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMLSEDHRKRVLTSLESALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+  + V   L   +   + 
Sbjct: 402 CSSCPACEGRGSVKTVETVCYEILREITRVNRAYDADKFVVYAAAAVAEALEGDESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486


>gi|239814385|ref|YP_002943295.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110]
 gi|239800962|gb|ACS18029.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110]
          Length = 1074

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 189/517 (36%), Positives = 285/517 (55%), Gaps = 1/517 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  IQ+VIK  Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQYFAEGVSANQARIQDVIKEGQELVVQVEKEERGNKGAALTTFISLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +   A       L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP
Sbjct: 189 LWSAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYEQAQQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D   +F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDM+E KN R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G+IS FGL+EMSRQR++ ++ E ++  C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+     + V    +V  +LLN+KR  I + E +  V++ +V    L    + +E+   
Sbjct: 429 CLKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPNYKLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
               ++        +       ++    Q+      P
Sbjct: 489 DDPRLDHIEASYKMADEIEDPTSVTRRSQEPTNKQTP 525



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 65/109 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA +++      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFAEGVSANQARIQDVIKEGQELVVQVEKEERGN 110


>gi|114775486|ref|ZP_01451054.1| Ribonucleases G and E [Mariprofundus ferrooxydans PV-1]
 gi|114553597|gb|EAU55978.1| Ribonucleases G and E [Mariprofundus ferrooxydans PV-1]
          Length = 727

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 197/547 (36%), Positives = 292/547 (53%), Gaps = 14/547 (2%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
                R   IQ+V+  +Q LLVQ+VKEERGNKGAA+TT +SLAGRY VL PNT++G  IS
Sbjct: 81  KSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQISLAGRYLVLSPNTTRGG-IS 139

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           RK+++    +++KEI   L+VP  MG+I+RTAG  +T   ++RD++YL RLWD +R  + 
Sbjct: 140 RKLSDEER-RSMKEILSQLDVPENMGLIIRTAGKDQTLEALQRDYQYLRRLWDEIRIKSE 198

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            +  P L+Y EG+L  RAIRD +  D+ EI V   + Y   K F+  ++P   ++V+ Y 
Sbjct: 199 TTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHTKAFVHAVLPGKEKLVKLYR 258

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
              P+F + GIE Q + +H+ E+ L + G ++++ TEAL SIDVNS R+T+   I+DTAL
Sbjct: 259 GKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALTSIDVNSARATKGKHIDDTAL 318

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
             NLEAAEEIARQLR+RD+ GLIV+DFIDM  +K+ + VE  L+++ K D+AR+Q   IS
Sbjct: 319 AINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQVEDMLRKACKGDKARIQFARIS 378

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
            FGLLEMSRQR+  SV ESTT+ C  C+G G+IR+  S+AL +L  +E++        ++
Sbjct: 379 RFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMALQMLTRMEDWAEAGKKPTLV 438

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
           V   SD   YL+N KR  I   E  + + I + I  +L    + IE+    Q   N   +
Sbjct: 439 VQVPSDTGEYLMNNKRDNIARIEETYEIQITLQIRPDLDIPHYRIER----QWTENNQQR 494

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV--------IRKRR 632
           V          K      + + + P+    +          E+  G           + R
Sbjct: 495 VEVLEDTNKRVKPPRPNRKLKPMKPVVGIPTPPPELAEKAEEKKKGPLTTLIAMLTGQSR 554

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           + + ++               S          +                      +  D 
Sbjct: 555 KEKLQKEAEEKAQAEREAQRQSERSRNSRARGEKKSRRKPAAAKTSAPENVAEEKQKTDS 614

Query: 693 SIPPVST 699
           + P    
Sbjct: 615 NNPNSEK 621



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 109/726 (15%), Positives = 221/726 (30%), Gaps = 83/726 (11%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+ASH EE+RV +  D  + ELD ES  K   K NIY  KVT+VE SLQAAFV+YG  
Sbjct: 1   MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           R GFL   EIHPDY++                                    D   +   
Sbjct: 61  RQGFLSLSEIHPDYWK------------------------------------DGVDKSTN 84

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
           P     Q+            V     +        +    +         +     + + 
Sbjct: 85  PRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQISLAGRYLVLSPNTTRGG---ISRK 141

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           + +E       + + L +     +++    K +T+     +    + L +  R       
Sbjct: 142 LSDEERRSMKEILSQLDVPENMGLIIRTAGKDQTLEALQRDYQYLRRLWDEIRIKSETTP 201

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP------------HLVYEEG 292
              ++   G   T+       + +  +W +  E+  ++ A              L   + 
Sbjct: 202 PPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHTKAFVHAVLPGKEKLVKLYRGKI 261

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
            L ++   +  C+++ E  +    G     D  + L        R  +  H       I 
Sbjct: 262 PLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALTSIDVNSARATKGKHIDDTALAIN 321

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
           ++       ++ +   G         L+ ID     S +     +  L+   +  +   +
Sbjct: 322 LEAAEEIARQLRIRDIG--------GLIVIDFIDMASRKHGQQVEDMLRKACKGDKARIQ 373

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
             R+           ++M  ++ + SV +   E   + + R  +  + +  L  ++R   
Sbjct: 374 FARISRFG------LLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMALQMLTRMED 427

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
            +   +  T V       G            L + +   +        +     +   L 
Sbjct: 428 WAEAGKKPTLVVQVPSDTG----------EYLMNNKRDNIARIEETYEIQITLQIRPDLD 477

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
                   ++       + V+           ++   P + L      VG  +  P   +
Sbjct: 478 IPHYRIERQWTENNQQRVEVLEDTNK-----RVKPPRPNRKLKPMKPVVGIPTPPPELAE 532

Query: 593 NIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
             E   +     L+ +   +S ++       E++      +R+  R R            
Sbjct: 533 KAEEKKKGPLTTLIAMLTGQSRKEKLQKEAEEKAQAEREAQRQSERSRNSRARGEKKSRR 592

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
              ++  +  ++  +   + +D  N N  +N             P        +S +   
Sbjct: 593 KPAAAKTSAPENVAEEK-QKTDSNNPNSEKNTPKKPRRPRKPRAPKPEGEATVNSATEQQ 651

Query: 711 PIVKKT 716
                T
Sbjct: 652 SAEGTT 657


>gi|94499594|ref|ZP_01306131.1| Ribonucleases G and E [Oceanobacter sp. RED65]
 gi|94428348|gb|EAT13321.1| Ribonucleases G and E [Oceanobacter sp. RED65]
          Length = 873

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 221/642 (34%), Positives = 332/642 (51%), Gaps = 16/642 (2%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151
            ++    A+ D     D+ I      ++ A I        E S+ +A  D  +       
Sbjct: 7   QSEELRVALVDGQRLYDLDIEPTTRQQKKANIYKGKITRVEPSLEAAFVDFGAERHGFLP 66

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +K  S E   +    +  I++VI+  Q ++VQ+ KEERGNKGAA+TT +SLAGRY VLMP
Sbjct: 67  LKEISREYFKQSTSGRPNIKDVIEEGQEVVVQVDKEERGNKGAALTTMISLAGRYLVLMP 126

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N ++   ISR+I        +++  R + VP  MGVI+RTAG  R   E++ D +YL +L
Sbjct: 127 NNARAGGISRRIEGDER-NQIRDAMRDVNVPNNMGVIVRTAGIGRASEELQWDLDYLCQL 185

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           WD ++       AP L+ +E N++ RAIRD   +DI E+++     Y EA  F++ +MP 
Sbjct: 186 WDAIKGAYDRRDAPCLLLQESNVVIRAIRDYLRQDIGEVLIDDPVVYDEALSFVQAVMPQ 245

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           Y   ++ Y+D  P+F R  IE Q+++ +Q EV LPS G ++I+ TEAL+SID+NS RST+
Sbjct: 246 YENKIKLYQDSTPLFSRYQIEAQIETAYQREVKLPSGGSIVIDTTEALISIDINSSRSTK 305

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IEDTAL TNLEAA+EIARQLRLRD+ GLIV+DFIDM   KN R VE ++K++L+ DR
Sbjct: 306 GSDIEDTALNTNLEAADEIARQLRLRDIGGLIVIDFIDMTSNKNQREVENRMKDALEIDR 365

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S+ALS+LR +EE  
Sbjct: 366 ARVQVGRISRFGLLEMSRQRLRPSLGETSGHVCPRCDGTGTIRDMRSLALSLLRLIEEEA 425

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            +     +      +V  +L N KR  I+  E+R    I+++         F + +    
Sbjct: 426 AKENTAQVRAVVPLEVSSFLSNDKRQDIIAIESRHSAEISIIPNPNFQTPHFEVLRVREG 485

Query: 572 QALVN--------TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVS 621
           +++ +                +        ++ V    A  P    E   L  I   I  
Sbjct: 486 ESVADQVSFEIMYEEELATEATPPVRETAAVKAVATTRAPSPKETKEPGLLSKIGSAISG 545

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             S+    K++    R      +      ++ +   N  + S +         N+     
Sbjct: 546 LFSSEEEPKKKTSNNRSNSNRSNSGNKNRNNGNRNNNRRNQSDNRNQSNGGRNNNQRNGK 605

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +   EN   S P  +  + +  N++S+    K +   RR+
Sbjct: 606 TNNRRQEN--TSKPDAANKQDKKPNNNSEKSNDKPKQQARRR 645



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 60/103 (58%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD E   ++Q K NIY  K+TRVEPSL+AAFVD+G  
Sbjct: 1   MLINATQSEELRVALVDGQRLYDLDIEPTTRQQKKANIYKGKITRVEPSLEAAFVDFGAE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++   S R  +       Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKQSTSGRPNIKDVIEEGQEVVVQVDKEE 103



 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 32/147 (21%), Gaps = 14/147 (9%)

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
            +   + ++                  + +  +    + E +    K++ RRR R     
Sbjct: 593 SNGGRNNNQRNGKTNNRRQENTSKPDAANKQDKKPNNNSEKSNDKPKQQARRRNRSNKQQ 652

Query: 644 --------------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                                + V   +           E       N            
Sbjct: 653 APLDDKVARKIEAVEQPKSSTNKVEEPKAKAKPDAKKQSEAKPTNKANSTPEKTEKVETK 712

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +   +     P+ E  +++   I   T
Sbjct: 713 HSTQVQTAEQPKAEKDSTAKPAIESNT 739


>gi|254448184|ref|ZP_05061647.1| ribonuclease E [gamma proteobacterium HTCC5015]
 gi|198262310|gb|EDY86592.1| ribonuclease E [gamma proteobacterium HTCC5015]
          Length = 914

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 203/586 (34%), Positives = 323/586 (55%), Gaps = 19/586 (3%)

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
            E  +   P+D+      +  +++ IK  Q L++Q+ KEERGNKGAA+TT +SLAGRY V
Sbjct: 71  KEINRRYLPDDIETNDNGRPNVKDGIKEGQELIIQVEKEERGNKGAAITTNISLAGRYLV 130

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
            MP++ +   +SR+I      +  +E  + + +P G GVI+RTAG  RT  E++ DF+YL
Sbjct: 131 AMPHSPRSGGVSRRIEGEERAQV-REAMQDMTIPDGTGVIVRTAGVGRTSEELQWDFDYL 189

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++W+ + + A +   P L+Y+E N+I RA+RD Y  DI EI++     +++A DFM L 
Sbjct: 190 AQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAGIHKQANDFMSLA 249

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           M +  R ++ YED  P+F R  IE Q++S  Q EV LPS G ++++ TEAL SID+NS R
Sbjct: 250 MQNDLRKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPTEALTSIDINSAR 309

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           +T+   I++TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   K+ R VE +L+++++
Sbjct: 310 ATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQREVENRLRDAVR 369

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
            DRARVQ   IS FGLLEMSRQR+R S+ ES+ +VC  C+G G IRS  S+AL++LR +E
Sbjct: 370 IDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSIESLALAVLRIME 429

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           E  L+     +I     DV  ++LN+KR  + E E R  + + +V    L    + +E+ 
Sbjct: 430 EEALKENTGRVIAQLPVDVATFMLNEKRQQVAELENRNSIDLLIVPNKALETPHYVVERV 489

Query: 569 SPVQALVNTGH----KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
                  N       +     ++   +   +    +E  +      +   ++     +E+
Sbjct: 490 RLSDKEANAKRTSYEQATVAEESYVPELRSDKTPVEEPAVQTVAPVAPPQVEQKPKKKEA 549

Query: 625 T-------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                         G   KR  + ++ +   +++  G  ++    +N   +  +     +
Sbjct: 550 APLGLLARLIQWLFGNQDKRPSKGQKGKQQRNNNRGGGRNNNRGGRNNNRNRNNRNQNNN 609

Query: 672 DITNHNLLENGA-HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           D  N    +N +  G  +N   S       + + +N+S +    K 
Sbjct: 610 DKKNKQRSDNRSGGGRQQNKGKSDNKNDNRQSKGNNNSDNGDQNKD 655



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 52/76 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++  LD E   ++Q K NIY   +TRVEPSL+AAFVD+G
Sbjct: 2  KRMLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            RHGFLPF EI+  Y
Sbjct: 62 AERHGFLPFKEINRRY 77


>gi|260549181|ref|ZP_05823402.1| ribonuclease E [Acinetobacter sp. RUH2624]
 gi|260407909|gb|EEX01381.1| ribonuclease E [Acinetobacter sp. RUH2624]
          Length = 1109

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 207/568 (36%), Positives = 319/568 (56%), Gaps = 10/568 (1%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQSTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEIAYNPDGF 489

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A  +      + S              +EA      + + ++      +  +T  + ++ 
Sbjct: 490 APSSYERTEATRSSEKELGYESSEWHLEEADHAHVTAPASKNGSAQKKTSHTTQPVVQQP 549

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
             ++   P         + ++   +           + +      ++  GA    +   V
Sbjct: 550 AAQKAASPCA------WLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQFGQV 603

Query: 693 SIPPVSTPEMESSNS---SSDPIVKKTR 717
           ++P V+      +N+   S  P+ ++ R
Sbjct: 604 AVPAVAEVAPVQTNNAYISQSPVKQEVR 631



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|189423825|ref|YP_001951002.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ]
 gi|189420084|gb|ACD94482.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ]
          Length = 741

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 202/651 (31%), Positives = 318/651 (48%), Gaps = 15/651 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++  + + + E    + T G++       +E     A      ++   I  
Sbjct: 12  PEEARVAIVQDGRLMELNIEISGKEQTKGNIYKGVVVRVEPGLQAAFVDIGQKKPGFIQ- 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
             D+  +    +   PE   K   R+  IQEV++  Q L+VQ+ K+ R  KGAA+T+YLS
Sbjct: 71  MGDLHPDSWQWREDIPETERK---RRPRIQEVLRRGQELIVQVEKDARDMKGAALTSYLS 127

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP       ISRKI +   RK LK +   L+VPAG G I+RT    R+  E+
Sbjct: 128 LPGRYMVLMPG-DDAAGISRKIEDNATRKELKALVAELQVPAGYGYIVRTEAVGRSSDEL 186

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           K+D +YL+ + + +   A        VY++  +I R IRD +  DI E++V  +   ++A
Sbjct: 187 KKDLDYLVGVHERILSQAAEIKGAGEVYQDAGVIIRTIRDYFSDDIDEVLVDDKAACQQA 246

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            DF K +MP   ++V+ +++  PIF +  +E Q+D L++  V+LPS G ++I  TEALVS
Sbjct: 247 IDFFKEIMPGCEKLVKLHKEKRPIFSKYQLEEQIDQLYEKRVSLPSGGSLVIEPTEALVS 306

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+S+ E  +EDTA +TNLEAA E+ARQLRLRDL GL+V+DFIDM + K+N+ VE+
Sbjct: 307 IDVNSGKSSGEKGVEDTAFKTNLEAAAEVARQLRLRDLGGLVVIDFIDMRDNKHNKEVER 366

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK++LK D+ARV +G IS FG++EMSRQRI  ++ ++    C +C+G G ++S  ++A+
Sbjct: 367 TLKDALKSDKARVNLGRISQFGMMEMSRQRIAKNINDAIHLECPHCEGRGRVKSVEAMAV 426

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S LR V     +     +      +V  +LLN+K+  + + E  + + + +         
Sbjct: 427 SFLRKVHAAAAKGQVAEVRGGLPLEVAYFLLNRKKRELAQIENDYEIVVTIKGKPSFLLN 486

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              +E     +             Q        E V   E++ P       E        
Sbjct: 487 QLELETVRKEKQREEAVELETRQQQPVFEMVEPEAVGATESVTPSEGELGAEPAPKKRRK 546

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN--VIDDSFDMYMEPSDITNHNLL 679
            +      +R         A    D    +D +S +N  VI        EP         
Sbjct: 547 RKRKKKGGERGVELAVTDQADLALDNSGAADTASAENEEVISAQLAEQQEPVAKKRRRTR 606

Query: 680 ENGAHGFTENYDV-----SIPPVSTPEMESSNSS---SDPIVKKTRWWKRR 722
                  T++ +      + P V   E  +S        P   +     +R
Sbjct: 607 SKKKPVVTKDAEAQDIHQTPPAVDQVEAPASVPVPEHEKPARPEKPSRPKR 657



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ KMLI+  H EE RV +++D R+ EL+ E   K+Q KGNIY   V RVEP LQAAFVD
Sbjct: 1  MSRKMLINVLHPEEARVAIVQDGRLMELNIEISGKEQTKGNIYKGVVVRVEPGLQAAFVD 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQ 97
           G  + GF+   ++HPD +Q     R+ + +     +
Sbjct: 61 IGQKKPGFIQMGDLHPDSWQW----REDIPETERKRR 93


>gi|237800338|ref|ZP_04588799.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023195|gb|EGI03252.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 1093

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 220/671 (32%), Positives = 329/671 (49%), Gaps = 51/671 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQVG IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                                                     + + AP   + +      
Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547

Query: 601 EALLPIP--------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
             +   P               ++        +    +     +   RR  R+ +   ++
Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
                     +    +         +                    +    +  E   + 
Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREDSAPREERPAR 667

Query: 707 SSSDPIVKKTR 717
           +S +   ++ R
Sbjct: 668 TSRERKPREAR 678



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|15834813|ref|NP_296572.1| ribonuclease G [Chlamydia muridarum Nigg]
 gi|270284978|ref|ZP_06194372.1| ribonuclease E [Chlamydia muridarum Nigg]
 gi|270289001|ref|ZP_06195303.1| ribonuclease E [Chlamydia muridarum Weiss]
 gi|301336375|ref|ZP_07224577.1| ribonuclease E [Chlamydia muridarum MopnTet14]
 gi|7190231|gb|AAF39067.1| ribonuclease G [Chlamydia muridarum Nigg]
          Length = 512

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 166/566 (29%), Positives = 287/566 (50%), Gaps = 68/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +  ++Q+AF++
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFIN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                +GF     IH                           ++D + +           
Sbjct: 60  IDERENGF-----IH---------------------------ISDVLENSKKFEQMFDID 87

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +       S+ET E                                  I+E++K    +
Sbjct: 88  ADSDQSEPLSEETSE--------------------------------APIEELLKLDSPV 115

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P+ R  LK++ R  E
Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  S +   +  + + L+  W ++ E   +   P L+YEE +++K+A+ 
Sbjct: 175 MPQNMGLICRTASISASTEALINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K    +++     Y++ K  +    P  A  +  Y D  P+F R  IE ++D   +
Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLSKYSPDTAVKIEYYRDSVPMFERFNIEKEIDRATK 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNI 354

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538
               C YC G   I++  S+ + I R +++ +      ++ +  H ++  Y+  ++    
Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTHLCLVVHPEIAHYMKQEQDDVE 474

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           +V    +    + +     +    + 
Sbjct: 475 LVRLAKQLKAKLQINTSDSIHLNHYQ 500


>gi|66044883|ref|YP_234724.1| ribonuclease E and G [Pseudomonas syringae pv. syringae B728a]
 gi|63255590|gb|AAY36686.1| Ribonuclease E and G [Pseudomonas syringae pv. syringae B728a]
          Length = 1120

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 224/671 (33%), Positives = 327/671 (48%), Gaps = 45/671 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 28  EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 88  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 266

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506

Query: 574 LVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN-------------- 618
             ++       + A +  + I         L+    +      + N              
Sbjct: 507 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAAPAPTP 566

Query: 619 --------------------------IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                                             V +    +R  R     +        
Sbjct: 567 APAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRGR 626

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +          +              E          +           E S    +  
Sbjct: 627 NNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREESTPREERP 686

Query: 713 VKKTRWWKRRK 723
            + TR  K R+
Sbjct: 687 ARTTRERKPRE 697



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G
Sbjct: 18  KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 78  SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122


>gi|332308461|ref|YP_004436312.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175790|gb|AEE25044.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 487

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 124/567 (21%), Positives = 217/567 (38%), Gaps = 85/567 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+RV ++ +  ++E+  E   K+ + GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLINVT-PSESRVALIENGILQEVHIERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLE--IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118
            G ++  FL   +  IH +       D      E + +  +   + + V  G   +    
Sbjct: 60  IGLDKAAFLHASDIAIHSE-----VED------EVSSSHLEKRDIRELVRDGQNIVVQVV 108

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
             +     A  + +    S        V +V   +    E   ++   +  +QE      
Sbjct: 109 KDQIGTKGARLTTDITIPSRYLVFMPSVEHVGVSQRIEDEAERERL--KSLVQEYCSENG 166

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
             +++   E    +                            R++   +  +  K+    
Sbjct: 167 GFILRTAAEGVKAQELRQDADFL-------------------RRLWEKIRSRMKKKAHIL 207

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
            E       +LR          I+ D +             +  +   L Y  G+     
Sbjct: 208 YEDLPLARRVLR-DFVGTELDRIRIDSKLSFHELQQFTREYVPELHRLLEYYPGDRPIFD 266

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           + D                                                 +E +    
Sbjct: 267 LYD-------------------------------------------------VENESQRS 277

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
            +  V L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA   IARQLRLR+
Sbjct: 278 LERRVDLKSGGYIIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATSAIARQLRLRN 337

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           L G+I++DFIDM +  + R V   L+ +  KDRA++ +   +  GL+EM+R+R R S+  
Sbjct: 338 LGGMILIDFIDMADSDHQRRVIHSLESATSKDRAKINIHGFTALGLIEMTRKRTRESLEH 397

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
                C  CKG G +++  +V   I+R +      Y A   +V+    VV  LL ++   
Sbjct: 398 ILCGECPVCKGRGTVKTVETVCFEIMREIVRVNRAYDADKFVVYAAPSVVEALLGEESHM 457

Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565
           + E E      I V   +      + +
Sbjct: 458 LAELEVFVSKQIKVHTELLYNQDKYDV 484


>gi|84394339|ref|ZP_00993061.1| ribonuclease E [Vibrio splendidus 12B01]
 gi|84375032|gb|EAP91957.1| ribonuclease E [Vibrio splendidus 12B01]
          Length = 1061

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 205/678 (30%), Positives = 322/678 (47%), Gaps = 54/678 (7%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV++  Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ + ++ AP L+++E N+I RAIRD   +DI EI++     +  A+  ++L+ P 
Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++Y+   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+++++ DR
Sbjct: 311 GSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE--------------------- 610
           +      + + +  +A    ++ E V Q      I +                       
Sbjct: 491 EEFDLLSYLLPTKLEALKEAESKEPVEQTIRPKKIEEPALKGFAAPAQSAPTPAPAPKAV 550

Query: 611 SLEDIQDNIVSE--------------------------ESTGVIRKRRRRRRRRRPATDH 644
             + ++     E                          E     + +  R    R   D 
Sbjct: 551 EEKKVEPAATQEPSLIGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNRNNGNRQRRDR 610

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
           +D    +         ++  D   E  +    N  EN  +                E   
Sbjct: 611 NDNRRRNQRGDRGEQRNERGDRS-EQRNERGDNRNENRDNKRRRKPVRDEKTEEQKEAAP 669

Query: 705 SNSSSDPIVKKTRWWKRR 722
             +      K+ R  K R
Sbjct: 670 QQTRQPRKPKQDRRNKPR 687



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 109



 Score = 42.3 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-DAGVVSDVSSIQNVIDDSFDMYMEPS 671
           E    +    E      + R  +RRR+P  D   +    +     +       D   +P 
Sbjct: 628 ERGDRSEQRNERGDNRNENRDNKRRRKPVRDEKTEEQKEAAPQQTRQPRKPKQDRRNKPR 687

Query: 672 DITNHNLLENGAHGFTENYD-VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           D       +  +    E     +      PE   +   +  +  K R  +R+
Sbjct: 688 DEQKQQEEQVPSKLAEEGLQLAAEAQADKPEAPKAKPEAKAVKIKERRQRRK 739



 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 40/155 (25%), Gaps = 10/155 (6%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       +     + P  D+  +   + +       S+  E+        ++  
Sbjct: 657 RDEKTEEQKEAAPQQTRQPRKPKQDRRNKPRDEQKQQEEQVPSKLAEEGLQLAAEAQADK 716

Query: 627 VIRKR----------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
               +          + RR+RR+           +   +  N  + S +   + ++    
Sbjct: 717 PEAPKAKPEAKAVKIKERRQRRKLNKLVRVKDQQAQAEADNNADNASKEQKAQTANHEQA 776

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
              E           V+       E +   +   P
Sbjct: 777 VAQEQKVVEQVGATQVNAEQTEQEEPKQRRNRRSP 811



 Score = 38.4 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/137 (6%), Positives = 38/137 (27%), Gaps = 4/137 (2%)

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
            ++   ++  +   ++       K    E  ++   +        ++ ++ RR +P  + 
Sbjct: 631 DRSEQRNERGDNRNENRDNKRRRKPVRDEKTEEQKEAAPQQTRQPRKPKQDRRNKPRDEQ 690

Query: 645 HDAGVVSDVSSIQN----VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                       +       +   D    P        ++          +  +      
Sbjct: 691 KQQEEQVPSKLAEEGLQLAAEAQADKPEAPKAKPEAKAVKIKERRQRRKLNKLVRVKDQQ 750

Query: 701 EMESSNSSSDPIVKKTR 717
               +++++D   K+ +
Sbjct: 751 AQAEADNNADNASKEQK 767


>gi|330502587|ref|YP_004379456.1| RNAse E [Pseudomonas mendocina NK-01]
 gi|328916873|gb|AEB57704.1| RNAse E [Pseudomonas mendocina NK-01]
          Length = 1016

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 216/605 (35%), Positives = 314/605 (51%), Gaps = 26/605 (4%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S         
Sbjct: 9   EELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSERHGFLPLK 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +             +  I++V+K  Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 69  EISREYFSKAPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW
Sbjct: 129 NPRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLW 187

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++E + +  AP L+Y+E N+I RAIRD   +DI E++V   +   EA  F++ +MP Y
Sbjct: 188 SAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQY 247

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  ++ YED  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+ 
Sbjct: 248 ASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKG 307

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++E+L+ DRA
Sbjct: 308 SDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRA 367

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQVG IS FGLLEMSRQR+R S+ E++  VC  C G G IR   S++L+ILR +EE  L
Sbjct: 368 RVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEAL 427

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +       V  +LLN+KR +I + E R    I ++    L    F +++     
Sbjct: 428 KDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDS 487

Query: 573 ALV-------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
                            ++  A         + + EA +      S     +   +  + 
Sbjct: 488 PEALSGQTSYEIAATAENEEAAAHPAAATRTLVRQEAAIKAAPRSSAPVAAEPQPAPLAP 547

Query: 626 GVIRKRR--------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
               +                 +    +PA     +         +N    S +      
Sbjct: 548 TKSPEPSLFKGLVKSLVSLFAGKEEEAQPAVTEKKSSERPPREERRNGRQQSRNRGGRRD 607

Query: 672 DITNH 676
           D    
Sbjct: 608 DERKS 612



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 62/107 (57%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   ++ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           RHGFLP  EI  +Y+       +  +K+      +     +    G+
Sbjct: 61  RHGFLPLKEISREYFSKAPEGGRVNIKDVLKEGQEVIVQVEKEERGN 107


>gi|28898836|ref|NP_798441.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839695|ref|ZP_01992362.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
 gi|260879490|ref|ZP_05891845.1| ribonuclease E [Vibrio parahaemolyticus AN-5034]
 gi|260898211|ref|ZP_05906707.1| ribonuclease E [Vibrio parahaemolyticus Peru-466]
 gi|260899348|ref|ZP_05907743.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28807055|dbj|BAC60325.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746788|gb|EDM57776.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
 gi|308088384|gb|EFO38079.1| ribonuclease E [Vibrio parahaemolyticus Peru-466]
 gi|308093512|gb|EFO43207.1| ribonuclease E [Vibrio parahaemolyticus AN-5034]
 gi|308110270|gb|EFO47810.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1023

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 193/518 (37%), Positives = 289/518 (55%), Gaps = 6/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 191 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           +      + +    +A    +  E    D     I + 
Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEP 528



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109


>gi|330973867|gb|EGH73933.1| ribonuclease E [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1101

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 225/671 (33%), Positives = 327/671 (48%), Gaps = 45/671 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTSFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKV--------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI---------- 615
             ++              +  AP        V Q+ A+   P   +              
Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAAPAPTP 547

Query: 616 -----------------------QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                                             V +    +R  R     +        
Sbjct: 548 APAPAAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRGR 607

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +          +              E          +           E S    +  
Sbjct: 608 NNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREESTPREERP 667

Query: 713 VKKTRWWKRRK 723
            + TR  K R+
Sbjct: 668 ARTTRERKPRE 678



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|239500867|ref|ZP_04660177.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter baumannii AB900]
          Length = 1110

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D     V+  ++    
Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
            +++     +P          S  + ++N                + +      ++  GA
Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V++P V+      SN+   S  P+ +  R
Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|169797346|ref|YP_001715139.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter baumannii AYE]
 gi|213155839|ref|YP_002317884.1| ribonuclease E [Acinetobacter baumannii AB0057]
 gi|215484786|ref|YP_002327021.1| Ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294]
 gi|301345640|ref|ZP_07226381.1| ribonuclease G and E [Acinetobacter baumannii AB056]
 gi|301511839|ref|ZP_07237076.1| ribonuclease G and E [Acinetobacter baumannii AB058]
 gi|301597320|ref|ZP_07242328.1| ribonuclease G and E [Acinetobacter baumannii AB059]
 gi|332852952|ref|ZP_08434462.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150]
 gi|332867956|ref|ZP_08437944.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113]
 gi|169150273|emb|CAM88170.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter baumannii AYE]
 gi|213054999|gb|ACJ39901.1| ribonuclease E [Acinetobacter baumannii AB0057]
 gi|213988011|gb|ACJ58310.1| Ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294]
 gi|332728888|gb|EGJ60243.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150]
 gi|332733657|gb|EGJ64816.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113]
          Length = 1110

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D     V+  ++    
Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
            +++     +P          S  + ++N                + +      ++  GA
Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V++P V+      SN+   S  P+ +  R
Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|330891480|gb|EGH24141.1| ribonuclease E [Pseudomonas syringae pv. mori str. 301020]
          Length = 1033

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 206/608 (33%), Positives = 307/608 (50%), Gaps = 48/608 (7%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN  + 
Sbjct: 1   REYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRA 60

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
             ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW  ++
Sbjct: 61  GGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIK 119

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA  +
Sbjct: 120 EASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKI 179

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
           + YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+   IE
Sbjct: 180 KLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGSDIE 239

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRARVQ+
Sbjct: 240 ETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQI 299

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
           G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+   
Sbjct: 300 GRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALKDRT 359

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ---- 572
             +       V  +LLN+KR +I + E R    I ++   +L    F +++         
Sbjct: 360 AEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSPEAH 419

Query: 573 -----------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
                                                  + + AP   + +        +
Sbjct: 420 NSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTPAPV 479

Query: 604 LPIP--------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
              P               ++        +    +     +   RR  R+ +   ++   
Sbjct: 480 AHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNNRRD 539

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                  +    +         +                    +    +  E   + +S 
Sbjct: 540 EERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREDSAPREERPARTSR 599

Query: 710 DPIVKKTR 717
           +   ++ R
Sbjct: 600 ERKPREAR 607


>gi|184156730|ref|YP_001845069.1| ribonuclease G and E [Acinetobacter baumannii ACICU]
 gi|332873141|ref|ZP_08441098.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059]
 gi|183208324|gb|ACC55722.1| Ribonuclease G and E [Acinetobacter baumannii ACICU]
 gi|322506619|gb|ADX02073.1| Ribonuclease E RNase E [Acinetobacter baumannii 1656-2]
 gi|323516496|gb|ADX90877.1| ribonuclease G and E [Acinetobacter baumannii TCDC-AB0715]
 gi|332738653|gb|EGJ69523.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059]
          Length = 1110

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D     V+  ++    
Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
            +++     +P          S  + ++N                + +      ++  GA
Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V++P V+      SN+   S  P+ +  R
Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|260556239|ref|ZP_05828458.1| ribonuclease E [Acinetobacter baumannii ATCC 19606]
 gi|260410294|gb|EEX03593.1| ribonuclease E [Acinetobacter baumannii ATCC 19606]
          Length = 1110

 Score =  294 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D     V+  ++    
Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
            +++     +P          S  + ++N                + +      ++  GA
Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V++P V+      SN+   S  P+ +  R
Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|193076231|gb|ABO10860.2| ribonuclease E [Acinetobacter baumannii ATCC 17978]
          Length = 1110

 Score =  294 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D     V+  ++    
Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
            +++     +P          S  + ++N                + +      ++  GA
Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V++P V+      SN+   S  P+ +  R
Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|166203325|gb|ABY84671.1| ribonuclease E [Solanum lycopersicum]
          Length = 935

 Score =  294 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 148/646 (22%), Positives = 277/646 (42%), Gaps = 66/646 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL + ++ EL  E         ++YL  VT++ P +  AFV+ G +
Sbjct: 274 ILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQCDSVYLGVVTKLAPHMGGAFVNIGTS 333

Query: 65  RHGFLPFLEIHPD---YYQIPFS--DRQA--------LLKESNIAQTDSEAVAD------ 105
           R  F+   +I P+   +   PF    R+         +L+E+     +   + +      
Sbjct: 334 RPSFM---DIKPNREPFVFPPFCHDSREKVINGASVDMLEENLGLPRNKSTLEEVDADEI 390

Query: 106 ------------------DVTHGDVTIPNDHSLEE-VAPIANFSQETEEESIISANNDVV 146
                             D   GD     +   E     +     ET  E     ++ + 
Sbjct: 391 DDADIEDESMEYMDSEFGDHESGDACDILEVLAENCNGSVTEHGLETHSEKYPEESSGIG 450

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
              ++       +  +  +R       ++    ++VQ+VKE  G KG  +T Y  L  R+
Sbjct: 451 YRGQNPTIERAMNGKRISQRDESKWVQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRF 510

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            VL+P       IS+KI      +    +      P G G+ +RT  A  +  E+++D E
Sbjct: 511 WVLVP-RGNTIGISKKIAGVERTR--LRVIAKTLQPQGYGLTVRTVAAGHSLNELQKDLE 567

Query: 267 YLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316
            L+  W ++ E A ++              ++++        ++D +   ++ ++V   +
Sbjct: 568 GLLSTWKSIIEHAKSAALAADEGVDGAVPVMLHQAMGQTLSVVQDYFSDKVNSLVVDSPR 627

Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
            Y E  ++++ + P+    V  +    P+F    IE +++++    V L + GY++I QT
Sbjct: 628 TYHEVTNYLQEMAPNLCERVELHGTRTPLFDEYNIEEEINNILSKRVPLDNGGYLVIEQT 687

Query: 377 EALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434
           EALVSIDVN G     +    E   L  NL AA +IAR++RLRD+ G+IVVDFIDM +  
Sbjct: 688 EALVSIDVNGGHCVLGQGTSQEMAILNVNLAAARQIAREIRLRDIGGIIVVDFIDMLDDS 747

Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494
           N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C  C G G + 
Sbjct: 748 NKRLVYEEVKKAVERDRSTVKVSELSRHGLMEITRKRVRPSVTFMISEPCMCCHGTGRVE 807

Query: 495 SQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYEA 544
           + ++    I R +   L                  I+     +  YL + KR  +    +
Sbjct: 808 ALATAYSKIEREICRLLSTTDLKADPENPKSWPRFILRVDQYMSNYLTSGKRTRLAILSS 867

Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
              V + + +        F ++  +  +       +       P+ 
Sbjct: 868 SLKVWLLLKVARGFTKGTFELKPLTGDKEYKGDERETSISVLRPTE 913


>gi|169634492|ref|YP_001708228.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter baumannii SDF]
 gi|169153284|emb|CAP02390.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter baumannii]
          Length = 1110

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D     V+  ++    
Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
            +++     +P          S  + ++N                + +      ++  GA
Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V++P V+      SN+   S  P+ +  R
Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|323491686|ref|ZP_08096864.1| ribonuclease G [Vibrio brasiliensis LMG 20546]
 gi|323314048|gb|EGA67134.1| ribonuclease G [Vibrio brasiliensis LMG 20546]
          Length = 489

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 122/565 (21%), Positives = 213/565 (37%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLINVT-PSETRVAMIEGGTLQEIHVEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I P             + E+   Q     +++ V  G   +      
Sbjct: 60  IGLEKAAFLHASDIVPH---------TECVAENEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E+   + K+   +          
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSEEERNRLKK--VVGHYCDENGGF 168

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +++   E   +K  +                       + R  +  ++R++  +    L 
Sbjct: 169 IIRTAAEGADDKELSQDAAF------------------LKRLWSKVMERRSKYKTRATLY 210

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G+   +          +I  D               +  +   L   EG+     + 
Sbjct: 211 GELGLSQRILRDFVGTELNKILVDSRTEFENLKEFTSEYVPELTDKLELYEGDKPIFDMY 270

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D                                                    ++    +
Sbjct: 271 DTEN-------------------------------------------------EIQRSLE 281

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+QTEA+ ++D+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 282 RKVDLKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   ++   V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMASDEHRNRVLTSLEAALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  SV   ILR +      Y A   +V+    V   L   +   + 
Sbjct: 402 CSSCPTCEGRGSVKTVESVCYEILREITRVNRAYDADKFVVYASPAVAESLQGDESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486


>gi|330975221|gb|EGH75287.1| ribonuclease E [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 1098

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 223/671 (33%), Positives = 326/671 (48%), Gaps = 45/671 (6%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+   C  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIFCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487

Query: 574 LVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN-------------- 618
             ++       + A +  + I         L+    +      + N              
Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAAPAPTP 547

Query: 619 --------------------------IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                                             V +    +R  R     +        
Sbjct: 548 APAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRGR 607

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +          +              E          +           E S    +  
Sbjct: 608 NNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREESAPREERP 667

Query: 713 VKKTRWWKRRK 723
            + TR  K R+
Sbjct: 668 ARTTRERKPRE 678



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|262393761|ref|YP_003285615.1| ribonuclease E [Vibrio sp. Ex25]
 gi|262337355|gb|ACY51150.1| ribonuclease E [Vibrio sp. Ex25]
          Length = 1024

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 196/588 (33%), Positives = 302/588 (51%), Gaps = 8/588 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 69  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 188 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 247

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 248 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 487

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +    +A    +  E    D  + P    E +                +  
Sbjct: 488 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 545

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              +++ +        G+ S +              ++          
Sbjct: 546 PEAKKKEQKVEQEEKPGLFSRLFKALGSFLFGGSEEVKEEPKPQEEKK 593



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG  
Sbjct: 1   MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60

Query: 65  RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
           RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 61  RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106



 Score = 38.0 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/128 (7%), Positives = 31/128 (24%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +          +D                +           E+ +    + ++  V 
Sbjct: 653 QQNRNQKRKPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVK 712

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R+RR+  +       +A       +     +       +P++       +N      +
Sbjct: 713 ERRQRRKLNKSVRVKDQEAVEKKTEETAVKTQEMVETKVEKPTEAAVETQQDNKQAESKQ 772

Query: 689 NYDVSIPP 696
             +   P 
Sbjct: 773 RRNRRSPR 780


>gi|109896518|ref|YP_659773.1| ribonuclease G [Pseudoalteromonas atlantica T6c]
 gi|109698799|gb|ABG38719.1| RNAse G [Pseudoalteromonas atlantica T6c]
          Length = 487

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 124/567 (21%), Positives = 217/567 (38%), Gaps = 85/567 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+ +   E+RV ++ +  ++E+  E   K+ + GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLINVT-PSESRVALIENGILQEVHIERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLE--IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118
            G ++  FL   +  IH +       D      E + +  +   + + V  G   +    
Sbjct: 60  IGLDKAAFLHASDIAIHSE-----VED------EVSSSHLEKRDIRELVRDGQNIVVQVV 108

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
             +     A  + +    S        V +V   +    E   ++   +  +QE      
Sbjct: 109 KDQIGTKGARLTTDITIPSRYLVFMPSVEHVGVSQRIEDEAERERL--KSLVQEYCSENG 166

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
             +++   E    +                            R++   +  +  K+    
Sbjct: 167 GFILRTAAEGVKAQELRQDADFL-------------------RRLWEKIRSRMKKKTHIL 207

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298
            E       +LR          I+ D +             +  +   L Y  G+     
Sbjct: 208 YEDLPLARRVLR-DFVGTELDRIRIDSKLSFHELQQFTREYVPELHRLLEYYPGDRPIFD 266

Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358
           + D                                                 +E +    
Sbjct: 267 LYD-------------------------------------------------VENESQRS 277

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
            +  V L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA   IARQLRLR+
Sbjct: 278 LERRVDLKSGGYIIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATSAIARQLRLRN 337

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           L G+I++DFIDM +  + R V   L+ +  KDRA++ +   +  GL+EM+R+R R S+  
Sbjct: 338 LGGMILIDFIDMADADHKRRVIHSLESATSKDRAKINIHGFTALGLIEMTRKRTRESLEH 397

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
                C  CKG G +++  +V   I+R +      Y A   +V+    VV  LL ++   
Sbjct: 398 ILCGECPVCKGRGSVKTVETVCFEIMREIVRVNRAYDADKFVVYAAPSVVEALLGEESHM 457

Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565
           + E E      I V   +      + +
Sbjct: 458 LAELEVFVSKQIKVHTELLYNQDKYDV 484


>gi|262280822|ref|ZP_06058605.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202]
 gi|262257722|gb|EEY76457.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202]
          Length = 1118

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 212/577 (36%), Positives = 318/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L +P GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E    V + ++    L    + I+      
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTILPHPHLETPHYEIQ------ 483

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D      +  +     
Sbjct: 484 --------YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPAANNTAG 535

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
           +++  +  +  A         S  + ++N                + +  +   ++  GA
Sbjct: 536 QKKVNQPAQPAAAQPSTQKAASPCAWLENLFVQKQAKTVDQSRSAQNAAASIEQMVNTGA 595

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V +P V+      SN+   S  P  ++ R
Sbjct: 596 VSRGQFGQVVVPAVAEVVSAPSNNAYISQSPAKQEVR 632



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|83644954|ref|YP_433389.1| ribonucleases G and E [Hahella chejuensis KCTC 2396]
 gi|83632997|gb|ABC28964.1| Ribonucleases G and E [Hahella chejuensis KCTC 2396]
          Length = 1056

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 212/635 (33%), Positives = 333/635 (52%), Gaps = 11/635 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ + I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                      +   +  I+++++  Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 72  EISREYFKSQPQKGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFISLAGRYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK+   GL VP  MG+I+RTAG  R+  E++RD +YL++ 
Sbjct: 132 NNPRAGGISRRIEGDDRDQ-LKDAMSGLTVPKDMGLIIRTAGVGRSSKELQRDLDYLLQF 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           WD++R  + +  AP L+Y+E N++ RA RD   +DI E+++   + +++A +F+K +MP+
Sbjct: 191 WDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDALNFVKAVMPN 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   ++ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T+
Sbjct: 251 FENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TALQTNLEAA+EIARQLRLRD+ GLIV+DFIDM   KN R VE +LKE+L+ DR
Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVENRLKEALELDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ E+  ++C  CKG G IR   S+ALS++R +EE  
Sbjct: 371 ARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLALSVMRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            +     +       V  YLLN+KR  + + + R GV + VV    +    F +++    
Sbjct: 431 FKERTAEVRAICPISVATYLLNEKRENLAKTQKRHGVKVIVVPNSHMDTPHFEVQRIRDD 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            A V+                 +E +   E +      +++          E  G++++ 
Sbjct: 491 NANVSEISYNVRPEME--EKNPVESLLHKEVVRQEAAVKTIVPSSTPTPPSEEVGLLKRL 548

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN---GAHGFTE 688
           R++  +            ++   S Q   D                  +N   G     E
Sbjct: 549 RQKVSKMFSGEKKDSDLKITVAESPQTSQDKDAGRRKVKVRDRQDGQRDNQRQGDSRQAE 608

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           + D            + + +     +      RR+
Sbjct: 609 SRDGGQDNRRGNRGRNDDRNQRRNERNDGQKDRRQ 643



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 56/78 (71%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   ++ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVD+G
Sbjct: 2  KRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLP  EI  +Y++
Sbjct: 62 AERHGFLPLKEISREYFK 79


>gi|254229868|ref|ZP_04923273.1| ribonuclease E [Vibrio sp. Ex25]
 gi|151937637|gb|EDN56490.1| ribonuclease E [Vibrio sp. Ex25]
          Length = 1027

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 196/588 (33%), Positives = 302/588 (51%), Gaps = 8/588 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +    +A    +  E    D  + P    E +                +  
Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 548

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              +++ +        G+ S +              ++          
Sbjct: 549 PEAKKKEQKVEQEEKPGLFSRLFKALGSFLFGGSEEVKEEPKPQEEKK 596



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109



 Score = 38.0 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/128 (7%), Positives = 31/128 (24%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +          +D                +           E+ +    + ++  V 
Sbjct: 656 QQNRNQKRKPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVK 715

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R+RR+  +       +A       +     +       +P++       +N      +
Sbjct: 716 ERRQRRKLNKSVRVKDQEAVEKKTEETAVKTQEMVETKVEKPTEAAVETQQDNKQAESKQ 775

Query: 689 NYDVSIPP 696
             +   P 
Sbjct: 776 RRNRRSPR 783


>gi|269967346|ref|ZP_06181407.1| ribonuclease E [Vibrio alginolyticus 40B]
 gi|269828054|gb|EEZ82327.1| ribonuclease E [Vibrio alginolyticus 40B]
          Length = 1024

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 196/588 (33%), Positives = 301/588 (51%), Gaps = 8/588 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +    +A    +  E    D  + P    E +                +  
Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 548

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              +++ +        G+ S +               +          
Sbjct: 549 PEAKKKEQNVEQEEKPGLFSRLFKALGSFLFGGSEETKEEQKPQEEKK 596



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109



 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/127 (7%), Positives = 32/127 (25%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +          +D                +           E+ +    + ++  V  
Sbjct: 657 QNRNQKRKPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVKE 716

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           +R+RR+  +       +A   +   +     +       +P++       +N      + 
Sbjct: 717 RRQRRKLNKSVRVKDQEAIEKNAEETAVKTQETVETKVEKPTEAAVEAQQDNKQAESKQR 776

Query: 690 YDVSIPP 696
            +   P 
Sbjct: 777 RNRRSPR 783


>gi|126640478|ref|YP_001083462.1| ribonuclease E [Acinetobacter baumannii ATCC 17978]
          Length = 1041

 Score =  293 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 2   REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 61

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L VP GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 62  NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 120

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 121 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 180

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 181 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 240

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 241 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 300

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 301 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 360

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I       
Sbjct: 361 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 413

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629
                      D  APS  +  E     E  L    SE      D     V+  ++    
Sbjct: 414 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 466

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683
            +++     +P          S  + ++N                + +      ++  GA
Sbjct: 467 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 526

Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
               +   V++P V+      SN+   S  P+ +  R
Sbjct: 527 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 563


>gi|330900158|gb|EGH31577.1| ribonuclease E [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 860

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 220/614 (35%), Positives = 316/614 (51%), Gaps = 19/614 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRAR
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           VQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L+
Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +       V  +LLN+KR +I + E R    I ++   +L    F +++      
Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDS- 486

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                    S +         E                 E       +  +  V  +   
Sbjct: 487 ----PEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAA 542

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM----------YMEPSDITNHNLLENGA 683
                 PA   H+  +   +      +  + +             E     N        
Sbjct: 543 PAPTPAPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQ 602

Query: 684 HGFTENYDVSIPPV 697
                N        
Sbjct: 603 QSRGRNNRRDEERK 616



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|168003555|ref|XP_001754478.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694580|gb|EDQ80928.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 162/646 (25%), Positives = 286/646 (44%), Gaps = 58/646 (8%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++LI+ S     R+ +L + +V E   E  + K   GNIYL +V ++ P +   FVD GG
Sbjct: 73  EILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGG 132

Query: 64  NRHGFLPFLEI---HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            R   L  L+I      Y   P       L   +++    + V  +++  D     +   
Sbjct: 133 PR---LALLDIARNQYPYTFPPVCGSGNHLSTDSVSGGSLQDVDLNLSDEDANFTEEEEE 189

Query: 121 ----------------------------EEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                                         V    +   E  ++S          +    
Sbjct: 190 EEEEEEEDEEDNKDEDEDEEPYEEGIARSIVVDRVSGEAENFKDSPEEKVQVKKLSKAWE 249

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                  +   F R++     ++    ++VQ+ KE  G KG  +T + SLAGR+ VL+P 
Sbjct: 250 PHRQGSPITVNFGRKFSKWRNVEEGMPIIVQVKKESMGKKGPRLTAFPSLAGRFWVLIP- 308

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
                 +S +IT P  R+   ++      P  +G+ +RT      + E++RD   LM  W
Sbjct: 309 RGNSVGVSARITGPERRR--LKLLAQKLQPEDLGITVRTEAIGHEQEELERDLTRLMDAW 366

Query: 273 DNVRELAL----------NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
             + E A            +  P L++ E       IRDL+ + +S ++V   + ++E  
Sbjct: 367 KEIMEKAAAAAVAVERGEEAAVPVLLHREMGQTLTIIRDLFTEKVSRVVVDSAQSFQEVI 426

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
           ++++ + P     V  Y    PIF +  +E  LD      V LP+ GY+++ +TEALVSI
Sbjct: 427 NYLQEVAPHLMNRVVLYSGKVPIFDKFNVESDLDKFFSERVKLPNGGYLVMQETEALVSI 486

Query: 383 DVNSGRSTREHCI--EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           DVN G     H +   +  L  NL AA++IA ++RLRD+ G+IVVDFIDM+  ++ + V 
Sbjct: 487 DVNGGTGMLGHSMKQREAILNVNLAAAKQIAHEIRLRDIGGIIVVDFIDMDNHEDEKLVY 546

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++++ ++++DR++V +  IS +GL+EM+R+R+R SV  +    C  CKG G + +  +  
Sbjct: 547 EEMRRAIQRDRSKVSISEISEYGLMEMTRKRVRPSVTYTIHSSCACCKGTGRVEALETTL 606

Query: 501 LSILRSVEEYLLQYTA--------HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
             I R++   L  +            I++     ++ +L + K+  I++      V IN+
Sbjct: 607 SKIERAIRRVLADHPDVSSDASTWPQILLRVEPSMLEFLKSWKKKRIIQLGHSLRVWINL 666

Query: 553 VIGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            +G+EL+   F + E         + G    S S     +  +   
Sbjct: 667 KLGMELSHGQFEVTEVPRTSSKKSSAGVPSASPSTISQQEAAVTAS 712


>gi|91227383|ref|ZP_01261772.1| ribonuclease E [Vibrio alginolyticus 12G01]
 gi|91188647|gb|EAS74937.1| ribonuclease E [Vibrio alginolyticus 12G01]
          Length = 1021

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 196/588 (33%), Positives = 301/588 (51%), Gaps = 8/588 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +     + A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       ++ +  I+EV+   Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LK     LE+P GMG+I+RTAG  ++  E++ D   L+  
Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++  A ++ AP L+++E N+I RAIRD   +DI EI++     Y  AK+ ++L+ P 
Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   V++YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+
Sbjct: 251 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+  S+ E++  +C  C G G +R   S+ALS+LR +EE  
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           L+     ++      +  YLLN+KR ++   E    V I VV   ++    F + +    
Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +      + +    +A    +  E    D  + P    E +                +  
Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 548

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              +++ +        G+ S +               +          
Sbjct: 549 PEAKKKEQNVEQEEKPGLFSRLFKALGSFLFGGSEETKEEQKPQEEKK 596



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES   +  K NIY  ++TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104
             RHGFLP  EI  +Y      YQ   S ++ L +   +     +   
Sbjct: 62  AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109


>gi|297831502|ref|XP_002883633.1| glycoside hydrolase starch-binding domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297329473|gb|EFH59892.1| glycoside hydrolase starch-binding domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 991

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 151/673 (22%), Positives = 277/673 (41%), Gaps = 69/673 (10%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           +  +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ 
Sbjct: 324 STTILINSSICTVQRIAVLEGEKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 383

Query: 62  GGNRHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTH 109
           G  RH F+   +I  +   +   PF D            L      A  + E  + D   
Sbjct: 384 GSARHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSINDIPAPHEIEHASYDFEA 440

Query: 110 GDVTIPNDHSLEEV---------------------------APIANFSQETEEESIISAN 142
             +   + +   E                                     +E   I    
Sbjct: 441 SSLLDIDSNDPGESFHDDDDEHENDEYHVSDALVGLVNGTVVNHGAVEVGSENGLIPLER 500

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
              V ++      S        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L
Sbjct: 501 EHSVDSLVSNPSVSKTSKAMPSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKL 558

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
             R+ VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E++
Sbjct: 559 RSRFWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQ 615

Query: 263 RDFEYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           +D E L+  W N+ + A +S            P L++         ++D +   + +++V
Sbjct: 616 KDLEGLLLTWKNITDEAKSSALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVV 675

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
              + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++
Sbjct: 676 DSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYDIEEEIEGILSKRVPLSNGGSLV 735

Query: 373 INQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           I QTEALVSIDVN G     + +  E   L+ NL A  +IAR++RLRD+ G+IVVDFIDM
Sbjct: 736 IEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAGRQIAREIRLRDIGGIIVVDFIDM 795

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
            ++ N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   
Sbjct: 796 ADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHAT 855

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIV 540
           G + +  +    I + +   L +                I+   S +  +L   KR  + 
Sbjct: 856 GRVEALETSFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLA 915

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
              +   V I + +        F ++     + +    H+V       +         + 
Sbjct: 916 ILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKK 975

Query: 601 EALLPIPKSESLE 613
             L+P  +  S +
Sbjct: 976 LTLIPKKEKTSGK 988


>gi|293610197|ref|ZP_06692498.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827429|gb|EFF85793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1107

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 213/576 (36%), Positives = 318/576 (55%), Gaps = 26/576 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L +P GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E    V + V+    L    + I+      
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHYEIQ------ 483

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVSEESTGVIRK 630
                      D  APS  +  E     E  L    SE    E    +  +  +      
Sbjct: 484 --------YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPAANNAAN 535

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684
           +++  +  +P          S  + ++N                + +      ++  GA 
Sbjct: 536 QKKANQAAQPTAQASAQKTASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAV 595

Query: 685 GFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
              +   V  P V+      SN+   S  P+ ++ R
Sbjct: 596 SRGQFGQVVAPAVAEVTSAPSNNAYISQSPVKQEAR 631



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|78224383|ref|YP_386130.1| ribonuclease G [Geobacter metallireducens GS-15]
 gi|78195638|gb|ABB33405.1| RNAse G [Geobacter metallireducens GS-15]
          Length = 500

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 149/565 (26%), Positives = 242/565 (42%), Gaps = 68/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MAN+++I+ S   ETR+ ++ +  + EL  E   +K I GNIY  KV RV P +QAAFVD
Sbjct: 1   MANELVINTS-SHETRIALIENGTIAELYIERSREKGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++                          E  +    +G+        L
Sbjct: 60  IGLEKAAFLYVADV---------------------FDAMEEFDSFMDRNGEDGEGEQQVL 98

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           + + PI    QE +E  +  +   + +    +                    +    + L
Sbjct: 99  QPLHPIEELLQEGQEILVQVSKEPIGTKGARITS-----------------HISLPGRHL 141

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +     +  G              +  V       G  I R        ++L      L 
Sbjct: 142 VYMPTVDHVGISRRIEEEPERERLKEIVERMKPQNGGFIVRTAAEGKSEEDLVSDMNYLT 201

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  +++          I  D +   +                            IR
Sbjct: 202 KLWDE--VVKRNDKGHAPSLIHADLDVTQK---------------------------VIR 232

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +D+S I+V  +  + +   F+   MP     +  Y+D  PIF   G+EV++     
Sbjct: 233 DILTEDVSRIVVDSKTEHDKIVQFISTFMPKMKYSMELYDDEEPIFDHFGLEVEISRALG 292

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR++ 
Sbjct: 293 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 352

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+E++K D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 353 GIIIIDFIDMEKEVNREKVFTALEEAMKADKSKTNILKISELGLVEMTRKRVRESIGRMM 412

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+++V   I R +   +L        +  H  V   L +++R  + 
Sbjct: 413 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGTKATLTVHPQVADLLYDEERRGLE 472

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E +F   I V        + F I
Sbjct: 473 ELEKKFKKRITVRAKPGFHQEQFEI 497


>gi|297172315|gb|ADI23292.1| ribonucleases G and E [uncultured actinobacterium HF0770_13M05]
          Length = 940

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 202/558 (36%), Positives = 294/558 (52%), Gaps = 10/558 (1%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++            + +  IQ+VI   Q  LVQ+ KEERGNKGAA++T++SLAGRY VL
Sbjct: 68  KEISRTYFNTRSTPNQGRVNIQDVINEGQECLVQVEKEERGNKGAALSTFMSLAGRYMVL 127

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I        L++    LE P GMG+I+RTAG  ++  E++ D +YL+
Sbjct: 128 MPNNPRSGGISRRIEGEERDS-LRDAMSELEFPDGMGIIIRTAGVDKSADELQWDLDYLL 186

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           +LW+ ++    ++ AP L+Y+E N+I R IRD    DISE+++  E  Y+EA DF++ +M
Sbjct: 187 QLWEAIQRAEKDNRAPALIYQETNVIVRTIRDNLRSDISEVLIDSEDAYKEAADFIEEVM 246

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P Y   ++ Y D  P+F R  IE Q++S  Q EV LPS G V+I+ TEALVSID+NS R+
Sbjct: 247 PHYRDRIKLYADSTPLFSRYQIESQIESAFQHEVKLPSGGSVVIDPTEALVSIDINSARA 306

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TAL TNLEAAEE+ARQLRLRD+ GLIV+DFIDM   +N R+VE +++E+L+ 
Sbjct: 307 TKGADIEETALTTNLEAAEEVARQLRLRDVGGLIVIDFIDMLASRNQRAVENRVREALET 366

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR Q+G IS FGL EMSRQR+R S+ E T++VC  C G G IR   S++L+ILR +EE
Sbjct: 367 DRARTQLGRISRFGLFEMSRQRLRPSLEEITSEVCPRCSGQGRIRDVESLSLAILRIMEE 426

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
             L+  +  +      ++  YLLN+KRA + E EAR    + +V         + +++  
Sbjct: 427 ESLKERSSIVRAVVPLNISAYLLNEKRADVAEIEARTKTHLVIVPNAAFETPNYEVQRIR 486

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                   G          SY+        +  L       S E      +   +     
Sbjct: 487 DDDVNEEVG--------VRSYELADIVTEVEIPLGRERPQPSREKAAVGAIEPNNPRPSP 538

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
             R R              V            +        +        +  +      
Sbjct: 539 SSRTRPTSNEQVRGAR-PSVFRRFVRSLFWAGEDEGTIPTGASRGRQRTRQVASPSRANA 597

Query: 690 YDVSIPPVSTPEMESSNS 707
            D +     T   +   S
Sbjct: 598 KDRNPKATDTDANQKRES 615



 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 56/75 (74%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+++  EE RV V+   ++ +LD E+  +++ KG+IY AK+ RVEPSL+AAFVD+G +
Sbjct: 1  MLINSTQPEEVRVAVVDGQKLYDLDIENRSRERKKGSIYKAKINRVEPSLEAAFVDFGAD 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLPF EI   Y+
Sbjct: 61 RHGFLPFKEISRTYF 75


>gi|89094315|ref|ZP_01167256.1| ribonuclease E [Oceanospirillum sp. MED92]
 gi|89081374|gb|EAR60605.1| ribonuclease E [Oceanospirillum sp. MED92]
          Length = 947

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 207/518 (39%), Positives = 294/518 (56%), Gaps = 6/518 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                    P     +  I+EV+K    ++VQ+ KEERGNKGAA+TT++SLAGRY VLMP
Sbjct: 72  EISREYFTQPPTRGSRPNIKEVLKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE   G+ +P  MG+I+RTAG  R+  E++ DFEYL  L
Sbjct: 132 NNPRAGGISRRIEGEDRAQ-LKEALSGVNIPKQMGIIVRTAGVGRSSEELQWDFEYLQTL 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ +    AP L+Y+E N++ RA+RD    DI E+++   + + +AK+F+K +MP+
Sbjct: 191 WTAIKQASEEKPAPFLIYQESNVVIRAVRDYLRSDIGEVLIDDPQVFEDAKNFVKQVMPT 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           Y   ++ Y +  P+F R  IE Q+++  Q EVTLPS G ++I+ TEALVSID+NS R+TR
Sbjct: 251 YESKIKHYSEQTPLFNRFQIETQIETAFQREVTLPSGGSIVIDPTEALVSIDINSARATR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRD+ GL+V+DFIDM   KN R VE +L+++LK DR
Sbjct: 311 GGDIEETALHTNLEAADEIARQLRLRDIGGLVVIDFIDMTPIKNQREVENRLRDALKLDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           ARVQ+G IS FGLLEMSRQR+R S+ E+   VC  C G G IR   S+ALSILR +EE  
Sbjct: 371 ARVQMGRISRFGLLEMSRQRLRPSLAETRGVVCPRCNGQGTIRDTESLALSILRLIEEES 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            +     I       V  YLLN+KR  + + E R  V + +V    +    + + +    
Sbjct: 431 GKDRTAQIRAILPVTVATYLLNEKRHAVHDIELRQDVRVVIVPNPNMETPHYEVVRLRDD 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
             +  T     +    P  D  IE      A      +
Sbjct: 491 HTVATTNDASYTMQPEPEDDDPIEASSTQAAPAREQAA 528



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYY-QIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  +Y+ Q P    +  +KE     T+     D    G+
Sbjct: 62  AERHGFLPLKEISREYFTQPPTRGSRPNIKEVLKEGTEVIVQVDKEERGN 111


>gi|33519869|ref|NP_878701.1| ribonuclease E [Candidatus Blochmannia floridanus]
 gi|33504214|emb|CAD83476.1| ribonuclease E [Candidatus Blochmannia floridanus]
          Length = 710

 Score =  291 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 176/509 (34%), Positives = 270/509 (53%), Gaps = 3/509 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           ++  +     +         ++                  + + E   +   ++    + 
Sbjct: 10  QKEELRVALVDGQRLYDLDIEIIGHEQKKANIYKGKIVRIEPSLEAVFVDYGSEKHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +      +      +  I+E+++  Q L+VQI KEERG KGAA+TT++SLAG Y VLM
Sbjct: 70  IKEISQEYFLCSSSHNKSSIKEILREGQELIVQIDKEERGTKGAALTTFISLAGSYLVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  K   ISR+I      + LKE    L++P GM +I+RTAG  ++   ++ D    ++
Sbjct: 130 PNNPKSGGISRRIEGNERIE-LKETLSTLDLPEGMSLIIRTAGVGKSIEALEWDLTSRLQ 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLM 329
            W  ++  A   +AP L++++ N+I RA RD    DI EI++        AK+ +  L  
Sbjct: 189 HWKTIQNTASTQLAPFLIHQDSNVIVRAFRDYLKPDIGEILIDNPDILNIAKEHITSLGR 248

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P + + ++ Y    P+F    IE Q++S    EV LPS G +II+ TEAL +ID+NS RS
Sbjct: 249 PDFVKKIKLYNGDIPLFSHYQIESQIESAFLHEVRLPSGGSIIIDTTEALTAIDINSARS 308

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IEDTA  TNLEA +EIARQLRLRD+ GLIV+DFIDM   K+ R +E  L+ ++++
Sbjct: 309 TKGLDIEDTAFNTNLEATDEIARQLRLRDVGGLIVIDFIDMISVKHQREIENTLRTTVRQ 368

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLE+SRQR+R S+ ES+  VC  C G G IR   S++LSILR +EE
Sbjct: 369 DRARIQIGRISKFGLLELSRQRLRPSLDESSHHVCPRCSGTGSIRDNKSLSLSILRLIEE 428

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568
             L+   + +       +  YLLN+KR  I + E R  GV   +V    +    + + + 
Sbjct: 429 EALKENTYEVHAIVPVAIATYLLNEKRKAISDIEQRQKGVRAIIVPYELMKTPNYEVRRI 488

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECV 597
              +      + + +     S+    E  
Sbjct: 489 RKGETNNKPSYLLATHHHNESFPSISEKT 517



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 60/108 (55%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD E    +Q K NIY  K+ R+EPSL+A FVDYG
Sbjct: 2   KRMLINATQKEELRVALVDGQRLYDLDIEIIGHEQKKANIYKGKIVRIEPSLEAVFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
             +HGFLP  EI  +Y+    S  ++ +KE      +     D    G
Sbjct: 62  SEKHGFLPIKEISQEYFLCSSSHNKSSIKEILREGQELIVQIDKEERG 109


>gi|161829769|ref|YP_001596416.1| ribonuclease [Coxiella burnetii RSA 331]
 gi|161761636|gb|ABX77278.1| ribonuclease, Rne/Rng family [Coxiella burnetii RSA 331]
          Length = 718

 Score =  291 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150
                A+ DD    D+ I      ++ + I      + E S         +       ++
Sbjct: 12  DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++         +       I  V+K  Q L+VQ+ KEERG KGAA+TT++SLAG + VLM
Sbjct: 72  EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + L+E    L +P GMG+I+RTAG  R K E++ D + L+R
Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ V++ A+    P+L+++E ++I RAIRD   +D+ EI++  E  +  A+ ++  + P
Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y +  P+F R  IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T
Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM   +N R VE  L+ +L +D
Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+RSS+  ST   C  C   G IRS  S+ LSI+  ++E 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +    +  +    D+  YL+N+KR  +   E  + V I +V    +   L+ + +   
Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRGIEHHYPVKITIVPNQYMETPLYQLRQIKI 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
             A +  G  + S      +        +  AL  
Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525


>gi|154706471|ref|YP_001424928.1| ribonuclease E [Coxiella burnetii Dugway 5J108-111]
 gi|154355757|gb|ABS77219.1| ribonuclease E [Coxiella burnetii Dugway 5J108-111]
          Length = 720

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 187/515 (36%), Positives = 286/515 (55%), Gaps = 7/515 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150
                A+ DD    D+ I      ++ + I      + E S         +       ++
Sbjct: 12  DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++         +       I  V+K  Q L+VQ+ KEERG KGAA+TT++SLAG + VLM
Sbjct: 72  EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + L+E    L +P GMG+I+RTAG  R K E++ D + L+R
Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ V++ A+    P+L+++E ++I RAIRD   +D+ EI++  E  +  A+ ++  + P
Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y +  P+F R  IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T
Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM   +N R VE  L+ +L +D
Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+RSS+  ST   C  C   G IRS  S+ LSI+  ++E 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +    +  +    D+  YL+N+KR  + + E  + V I +V    +   L+ + +   
Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRDIEHHYPVKITIVPNQYMETPLYQLRQIKI 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
             A +  G  + S      +        +  AL  
Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525


>gi|71892189|ref|YP_277921.1| ribonuclease E [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796295|gb|AAZ41046.1| ribonuclease E [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 866

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 176/427 (41%), Positives = 256/427 (59%), Gaps = 3/427 (0%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                ++ I+E++   Q L+VQI KEERGNKGAA+TT++SLAG Y VLMPN  K   ISR
Sbjct: 82  PSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPKSSGISR 141

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           +I        LKEI   LE+P GM +I+RTAG  ++   ++ D    ++ W  ++  A  
Sbjct: 142 RIEGNDRI-GLKEILSTLELPEGMSLIIRTAGLGKSIEALEWDLTSRLQHWKTIKNTAAK 200

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYE 340
            +AP L++++ N+I RA RD    DI EI++   K    AK+ +  L  P + + ++ Y 
Sbjct: 201 HLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLAKEHITSLGRPDFTKKIKFYN 260

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
              P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST+   IEDTA 
Sbjct: 261 GDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARSTKGTDIEDTAF 320

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
            TNLEA +EIARQLRLRD+ GLIV+DFIDM   ++ R +E  LK ++ +DRAR+Q+G IS
Sbjct: 321 HTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIENSLKIAVHQDRARIQIGHIS 380

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
            FGLLE+SRQR+ +S+ ES+  +C  C G G IR   S++LSILR +EE  L+   + + 
Sbjct: 381 KFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLSLSILRLIEEEALKDNTYEVH 440

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                 +  YLLN+KR  I + E R  GV   +V   ++    + I +    +      +
Sbjct: 441 AIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMKTPNYEIRRIRKGETYNKPSY 500

Query: 580 KVGSDSQ 586
            + ++  
Sbjct: 501 LLATNQD 507



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD E+   +Q K NIY  K+ R+EPSL+A FVDYG
Sbjct: 2   KRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYY-QIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLP  EI  +Y+   P S  +  +KE      +     D    G+
Sbjct: 62  VERHGFLPIKEISHEYFLSSPSSYNKFNIKEILCEGQELIVQIDKEERGN 111


>gi|165920603|ref|ZP_02219574.1| ribonuclease, Rne/Rng family [Coxiella burnetii RSA 334]
 gi|165916805|gb|EDR35409.1| ribonuclease, Rne/Rng family [Coxiella burnetii RSA 334]
          Length = 720

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 187/515 (36%), Positives = 286/515 (55%), Gaps = 7/515 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150
                A+ DD    D+ I      ++ + I      + E S         +       ++
Sbjct: 12  DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++         +       I  V+K  Q L+VQ+ KEERG KGAA+TT++SLAG + VLM
Sbjct: 72  EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + L+E    L +P GMG+I+RTAG  R K E++ D + L+R
Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ V++ A+    P+L+++E ++I RAIRD   +D+ EI++  E  +  A+ ++  + P
Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y +  P+F R  IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T
Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM   +N R VE  L+ +L +D
Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+RSS+  ST   C  C   G IRS  S+ LSI+  ++E 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +    +  +    D+  YL+N+KR  + + E  + V I +V    +   L+ + +   
Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRDIEHHYPVKITIVPNQYMETPLYQLRQIKI 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
             A +  G  + S      +        +  AL  
Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525


>gi|33151445|ref|NP_872798.1| ribonuclease E [Haemophilus ducreyi 35000HP]
 gi|33147665|gb|AAP95187.1| ribonuclease E [Haemophilus ducreyi 35000HP]
          Length = 980

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 206/626 (32%), Positives = 316/626 (50%), Gaps = 8/626 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I N    ++ + I        E S+ +A  D  S         
Sbjct: 12  EELRVALVDGQRLFDLDIENPGHEQKKSNIYKGKITRVEPSLEAAFVDYGSERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F  +  I+++IK  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP  +G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  +++ A +  AP L+++E ++I RAIRD   +DI EI++  +K + +AK+ ++L+ P 
Sbjct: 191 WSAIKQSAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           +   +R YE   P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RSTR
Sbjct: 251 FINRIRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E+ ++DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR+Q G IS FGLLEMSRQR+  S+ E+++ VC  C+G G IR   S+ALSILR VEE  
Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSILRLVEEEA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++     +       +  YLLN+KR  I   E R  V + VV    +    F + +    
Sbjct: 431 IKENTAQVHTIVPIQIASYLLNEKRTAISSIEKRHNVQVVVVPNQNMETPHFSVYRLREN 490

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           + L    + +    +  S D  +       A   +          ++++      +    
Sbjct: 491 ELLPTLSYDLAKLYEMRSEDSPLYTHQIPSAEENLTTRNEPVITVESVLQSSELNIQPAP 550

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
                 +    +   A +    +  +  ++              +    +  +   E   
Sbjct: 551 MPTSANQPSLLNRLIAKIKGLFAKTEEKVEAKPKPKTRNQRERRNRRDRSNRNDRQERKQ 610

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
            +  P  T E            KK R
Sbjct: 611 AT--PNQTQEDAKPTRQERTEPKKAR 634



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E+   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 SERHGFLPLKEISREYF 78


>gi|50083690|ref|YP_045200.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter sp. ADP1]
 gi|49529666|emb|CAG67378.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter sp. ADP1]
          Length = 1138

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 207/580 (35%), Positives = 317/580 (54%), Gaps = 24/580 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +   +    ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIASSYLHADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKE+   L VP GM VI+RTAG  R++ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  + +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 SQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F    IE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E   GV + V+    L    + I+      
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEIQ------ 483

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVSEESTGVIRK 630
                      +  APS  +  E     E  L    S     +    +           K
Sbjct: 484 --------YNPEGFAPSSYERTEATRSSEKELGYESSGWHLEDTEHQHASPVSQEASKAK 535

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684
            +++      A         S  + ++N                + +      ++ NGA 
Sbjct: 536 NQQKPASPASAPAATPVKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNNGAV 595

Query: 685 GFTENYDVS-IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +   V+ +P ++     +  S++  + + T     R+
Sbjct: 596 SRGQFGQVAHVPAIAETAPVAVPSNNAYMSQNTTKHDARE 635



 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 50/76 (65%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDY 78
            R GFL   EI   Y
Sbjct: 62 AQRQGFLSMREIASSY 77


>gi|288799935|ref|ZP_06405394.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333183|gb|EFC71662.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039]
          Length = 524

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 151/566 (26%), Positives = 254/566 (44%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D  + E   ES       GN+Y+AKV ++ P L A FVD
Sbjct: 1   MTSEIIIDARE-KEISIALLEDKNLVEYQNESRSASFSVGNVYIAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                                          D   H        +S 
Sbjct: 60  LGY---------------------------------------ERDAFLHYLDLGSQFNSY 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           ++        ++       +     +                   +   IQ  +   Q +
Sbjct: 81  DKYIKQVQSDRKKLSPFSKALKLPEIK------------------KDSSIQSTLSVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +T  LS AGRY VL+P +++    S+  +     + LK++   ++
Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRYLVLIPFSNQVSVSSKIKSGEERAR-LKQLIHSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAI 299
                GVI+RT    +   E+  + + L   W+            P L+YEE       +
Sbjct: 182 PK-NCGVIVRTVAEGKRVAELDAELKVLNNRWEAAILKIQKTQKRPQLIYEETGRTIALL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E+ + E K++++L+ P  A IV+ Y    PIF    I  Q+ S  
Sbjct: 241 RDLFNPSFENIYVNDEEVFAEIKNYLELIAPDKASIVKMYSGTVPIFDNFNITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              +      Y+II  TEAL  +DVNSG  TR    ++  AL  NL AA+E+ARQLRLRD
Sbjct: 301 GKTINYKHGAYLIIEHTEALHVVDVNSGNRTRSENGQEANALDVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMHLAEDRQLLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAIDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +  + C  C G G IRS       +   +++ + +   H   +H H  V  YL     + 
Sbjct: 421 NVEETCPTCFGKGKIRSSVLFTEQLESKIDQLINKIGIHKFYLHVHPYVAAYLNKGLWSI 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             +++ ++G  ++++   +LA   + 
Sbjct: 481 KRKWQFKYGFGVHIIPSQKLAFLQYE 506


>gi|153208856|ref|ZP_01947078.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177']
 gi|212218909|ref|YP_002305696.1| ribonuclease E [Coxiella burnetii CbuK_Q154]
 gi|120575645|gb|EAX32269.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177']
 gi|212013171|gb|ACJ20551.1| ribonuclease E [Coxiella burnetii CbuK_Q154]
          Length = 720

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150
                A+ DD    D+ I       + + I      + E S         +       ++
Sbjct: 12  DEVRVAITDDSKLIDLDIEIPGQEHKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++         +       I  V+K  Q L+VQ+ KEERG KGAA+TT++SLAG + VLM
Sbjct: 72  EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + L+E    L +P GMG+I+RTAG  R K E++ D + L+R
Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ V++ A+    P+L+++E ++I RAIRD   +D+ EI++  E  +  A+ ++  + P
Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y +  P+F R  IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T
Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM   +N R VE  L+ +L +D
Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+RSS+  ST   C  C   G IRS  S+ LSI+  ++E 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +    +  +    D+  YL+N+KR  + + E  + V I +V    +   L+ + +   
Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRDIEHHYPVKITIVPNQYMETPLYQLRQIKI 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
             A +  G  + S      +        +  AL  
Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525


>gi|319792201|ref|YP_004153841.1| ribonuclease, rne/rng family [Variovorax paradoxus EPS]
 gi|315594664|gb|ADU35730.1| ribonuclease, Rne/Rng family [Variovorax paradoxus EPS]
          Length = 1095

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 186/517 (35%), Positives = 281/517 (54%), Gaps = 1/517 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  IQ+ I+  Q L VQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQYFAEGVSASQARIQDAIREGQELTVQVEKEERGNKGAALTTFISLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +           L+Y+E +L+ RAIRD +  DI +I++  +  Y +A+ FM  +MP
Sbjct: 189 LWSAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYDQAQQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  V++Y D   +F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDM+E KN R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G+IS FGL+EMSRQR++ ++ E ++  C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+     + V    +V  +LLN+KR  I + E +  V++ +V    L    + +E+   
Sbjct: 429 CLKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPNYKLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
               ++        +        +    Q+      P
Sbjct: 489 DDPRLDHIEASYKMADEIEDPTAVTRRSQEPTNKQTP 525



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 66/109 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA ++++     +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFAEGVSASQARIQDAIREGQELTVQVEKEERGN 110



 Score = 40.7 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                       +D +    +       + EA +    S   E   DN  ++++     +
Sbjct: 822 APRGDRGERGERNDGRRERRNDAPPAANEGEARVAEVASADGEQGIDNAGNDQAPRREGE 881

Query: 631 RRRRRRRR-RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            +RR R R R   D  + G   +  +       + +  +  +        E       + 
Sbjct: 882 EQRRGRSRDRYGRDRRERGPRDENEANNAAETPAAEGAVAAAMEATGESYEAPVARQQQQ 941

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKK 715
             ++  PV+  ++     ++ P V++
Sbjct: 942 LPLASEPVAERQVSE--VAAPPEVRE 965


>gi|325124373|gb|ADY83896.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
           mRNA degradation [Acinetobacter calcoaceticus PHEA-2]
          Length = 1107

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 214/576 (37%), Positives = 318/576 (55%), Gaps = 26/576 (4%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKEI   L +P GM VI+RTAG  RT+ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA
Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR ++V  E    V + V+    L    + I+      
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHYEIQ------ 483

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVSEESTGVIRK 630
                      D  APS  +  E     E  L    SE    E    +  +         
Sbjct: 484 --------YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPVANNAAN 535

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684
           +++  +  +PA         S  + ++N                + +      ++  GA 
Sbjct: 536 QKKANQAAQPAAQASAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAV 595

Query: 685 GFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717
              +   V  P V+      SN+   S  P+ ++ R
Sbjct: 596 SRGQFGQVVAPAVAEVTSAPSNNAYISQSPVKQEAR 631



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 52/78 (66%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++  NR+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   Y+Q
Sbjct: 62 AGRQGFLSMREIANSYFQ 79


>gi|332525434|ref|ZP_08401593.1| ribonuclease G [Rubrivivax benzoatilyticus JA2]
 gi|332108702|gb|EGJ09926.1| ribonuclease G [Rubrivivax benzoatilyticus JA2]
          Length = 486

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 128/398 (32%), Positives = 203/398 (51%), Gaps = 1/398 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+  +   Q L VQ++K+  G KGA ++T +S+AGR  V +P+      IS+KI  P 
Sbjct: 87  PPIERHVFEGQTLTVQVIKDAIGTKGARLSTQISIAGRMLVFLPHDDHIG-ISQKIGGPE 145

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            R+ L+   + L    G G ILRT     +  E+  D  YL + W  +R+ A +     L
Sbjct: 146 LREQLRSRMQALVGADGGGFILRTNAEEASDAELADDIAYLRKTWAAIRQRAQSKPPGTL 205

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           ++++ +L +R +RDL       I +  +  +   + F +   P     +  Y    PIF 
Sbjct: 206 LHQDLSLAERVLRDLTTDATHSIRIDSKLQHEALRVFGETYTPGAVGKLEHYRGERPIFD 265

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             GIE ++       V L S GY+I++QTEAL ++DVN+G        EDT  +TNLEAA
Sbjct: 266 LFGIEEEIAKALARRVDLKSGGYLIVDQTEALTTVDVNTGGFVGARNFEDTIFKTNLEAA 325

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
             IARQLRLR+L G+I+ DFIDM  + + ++V  +L++ L +DR R  V   +  GL+EM
Sbjct: 326 GAIARQLRLRNLGGIIIADFIDMTREDHQQAVLAELRKQLARDRTRTTVSGFTQLGLVEM 385

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+     + C  C+G G +++  SV   ILR +     Q+      V   + V
Sbjct: 386 TRKRTRESLAHMLCEPCPTCQGRGQVKTARSVCYDILREILREARQFNPKEFRVIASAAV 445

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  LL+++   I       G  I++     +  + + I
Sbjct: 446 VEMLLDEESGHIAGLSEFIGKPISLSAEATMNPEQYDI 483



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 1  MANK-MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          MA + +LI+ +  +ETRV ++ +  V+EL  E   ++ + GN+YL KV RV P +Q+AFV
Sbjct: 1  MATQDILINWA-PQETRVAIVENGAVQELHVERTLERGLVGNVYLGKVARVLPGMQSAFV 59

Query: 60 DYGGNRHGFLPFLEI--HP 76
          D G  R  FL   ++  HP
Sbjct: 60 DIGLERAAFLHVADLFGHP 78


>gi|212213030|ref|YP_002303966.1| ribonuclease E [Coxiella burnetii CbuG_Q212]
 gi|212011440|gb|ACJ18821.1| ribonuclease E [Coxiella burnetii CbuG_Q212]
          Length = 720

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150
                A+ DD    D+ I      ++ + I      + E S         +       ++
Sbjct: 12  DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++         +       I  V+K  Q L+VQ+ KEERG KGAA+TT++SLAG + VLM
Sbjct: 72  EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + L+E    L +P GMG+I+RTAG  R K E++ D + L+R
Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ V++ A+    P+L+++E ++I RAIRD   +D+ EI++  E  +  A+ ++  + P
Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y +  P+F R  IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T
Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM   +N R VE  L+ +L +D
Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+RSS+  ST   C  C   G IRS  S+ LSI+  ++E 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +    +  +    D+  YL+N+KR  +   E  + V I +V    +   L+ + +   
Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRGIEHHYPVKITIVPNQYMETPLYQLRQIKI 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
             A +  G  + S      +        +  AL  
Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525


>gi|218261481|ref|ZP_03476292.1| hypothetical protein PRABACTJOHN_01958 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223999|gb|EEC96649.1| hypothetical protein PRABACTJOHN_01958 [Parabacteroides johnsonii
           DSM 18315]
          Length = 526

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 145/583 (24%), Positives = 259/583 (44%), Gaps = 58/583 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + VL D  + EL  E+ +     G+IYL KV ++ P L A    
Sbjct: 1   MISELVVDV-QPKEVSIAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNA---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F+++                              D   H     PN ++ 
Sbjct: 56  ---------AFIDVG--------------------------YKKDAFLHYLDLGPNFNTQ 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           ++        Q+ +++  + +   ++  +E               +   I  V+K  Q +
Sbjct: 81  QKFLKQTLGEQKGDKKLPVISKMQLLPEIE---------------KDGSISNVLKVGQEV 125

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQI KE    KG  +T+ LS AGRY VL+P   K    ++  ++    +          
Sbjct: 126 LVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERAR--LRQLIQSI 183

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P    VI+RT+   +   E+  + + L++ W+          AP L+YEE       +R
Sbjct: 184 KPKNFSVIVRTSSEGKRVAELDHELKTLLKRWEENIPKITKVKAPALIYEETARAVALLR 243

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++      I V+    Y   +D++ L+ P    IV++Y    PIF    I  Q+ SL  
Sbjct: 244 DIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFDNFAITKQIKSLFG 303

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419
             VT  S  Y+II  TEA+  IDVNSG  ++    ++ TA+  N  AA+EIARQLRLRD+
Sbjct: 304 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNTAAADEIARQLRLRDM 363

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM E  N + + + + +++  DRA+  +  +S FGL++++RQR+R ++   
Sbjct: 364 GGIIVVDFIDMSEAANRQKLYEHMLKAMSGDRAKHNILPLSKFGLMQITRQRVRPAMDVD 423

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T++ C  C G G I+       S+   ++  + ++      +H H  V  ++ + +    
Sbjct: 424 TSEACPTCFGTGTIKPSILFTDSLEGKIDCLVNKHNVKKFALHVHPYVAAFIKSGRFPLS 483

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
            +++ ++ + I V+    L    +        +  +    ++ 
Sbjct: 484 WKWKLKYSMGIKVIPNQSLGFLEYKFIDSDKNELDMMEEKEIK 526


>gi|71064833|ref|YP_263560.1| RNAse E [Psychrobacter arcticus 273-4]
 gi|71037818|gb|AAZ18126.1| RNAse E [Psychrobacter arcticus 273-4]
          Length = 1405

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 192/537 (35%), Positives = 288/537 (53%), Gaps = 10/537 (1%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   I+++IK    L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN  +G  ISR+I
Sbjct: 81  NPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPRGGGISRQI 140

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
           +  +     + +   L++P GM VI+RTAG  +T+ +++ D  +L+ +W  ++E      
Sbjct: 141 SGKLREDMKR-MLGSLDLPKGMSVIIRTAGIGKTQEDLQHDLNHLLNIWQAIQEQNQKYP 199

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           +P LV++E  ++ RA+RD    DI+EI +  E  Y EA  F+  +MP  A  +R+Y D  
Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDIAEIWIDNENAYIEAAGFIDAVMPKQAEKLRKYTDYE 259

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           P+F R  IE Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+   + +TA  TN
Sbjct: 260 PMFSRFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGSDVAETAYHTN 319

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L ++ K DRARVQ G IS FG
Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLIDATKYDRARVQFGDISKFG 379

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L+EMSRQR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     +    
Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERQGEVQAEV 439

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
            +D+  +LLN+KR ++V  E   G  I ++    L    F +                  
Sbjct: 440 PTDIAAFLLNEKRDSLVYLEQDSGTRITILPHAHLESPNFKLHFNRDG---------FAP 490

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
            S     D  ++   +    +    +E     Q                + + R      
Sbjct: 491 SSYERITDTQLQEHSELGYNVDWQTAEKERPEQQPTRQPRQGSDNNNGSQAQVRTNTQQS 550

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                  S   S ++  +++ ++    +  T                  S P    P
Sbjct: 551 APTQQQQSTSHSNEHRSNNNSNVTSARAPQTKETPSVPNPQSSQNIVTSSAPVAPQP 607



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++LI+A+  EE RV +   N + + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2   KRILINATQNEEIRVALCNGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR--QALLKESNIAQTDSEAVA 104
             R GFLP  EI  +Y      D   + L+KE +      E   
Sbjct: 62  SQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEE 105


>gi|29653829|ref|NP_819521.1| ribonuclease [Coxiella burnetii RSA 493]
 gi|29541092|gb|AAO90035.1| ribonuclease E [Coxiella burnetii RSA 493]
          Length = 720

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150
                A+ DD    D+ I      ++ + I      + E S         +       ++
Sbjct: 12  DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++         +       I  V+K  Q L+VQ+ KEERG KGAA+TT++SLAG + VLM
Sbjct: 72  EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + L+E    L +P GMG+I+RTAG  R K E++ D + L+R
Sbjct: 132 PNNPRAGGISRRIEGNERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ V++ A+    P+L+++E ++I RAIRD   +D+ EI++  E  +  A+ ++  + P
Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y +  P+F R  IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T
Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM   +N R VE  L+ +L +D
Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+RSS+  ST   C  C   G IRS  S+ LSI+  ++E 
Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +    +  +    D+  YL+N+KR  +   E  + V I +V    +   L+ + +   
Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRGIEHHYPVKITIVPNQYMETPLYQLRQIKI 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
             A +  G  + S      +        +  AL  
Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525


>gi|93005113|ref|YP_579550.1| ribonuclease [Psychrobacter cryohalolentis K5]
 gi|92392791|gb|ABE74066.1| RNAse E [Psychrobacter cryohalolentis K5]
          Length = 1449

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 194/540 (35%), Positives = 292/540 (54%), Gaps = 2/540 (0%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   I+++IK    L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN  +G  ISR+I
Sbjct: 81  NPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPRGGGISRQI 140

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
           +  +     + +   L++P GM VI+RTAG  +T+ +++ D  +L+ +W  ++E      
Sbjct: 141 SGKLREDMKR-MLGSLDLPKGMSVIIRTAGIGKTQEDLQHDLNHLLNIWQAIQEQNQKYP 199

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           +P LV++E  ++ RA+RD    DISEI +  E  Y EA  F+  +MP  A  +R+Y D  
Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDISEIWIDNENAYIEAAGFIDAVMPKQAEKLRKYTDYE 259

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           P+F R  IE Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+   + +TA  TN
Sbjct: 260 PMFSRFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGSDVAETAYHTN 319

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L ++ K DRARVQ G IS FG
Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLIDATKYDRARVQFGDISKFG 379

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L+EMSRQR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     +    
Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERQGEVQAEV 439

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
            +D+  +LLN+KR ++V  E   G  I ++    L    F +       A  +      +
Sbjct: 440 PTDIAAFLLNEKRDSLVYLEQDSGTRITILPHAHLESPNFKLHFNRDGFAPSSYERITDT 499

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-RRRRRRRRRPAT 642
             Q  S           E   P  +         +  S +        ++    +++  +
Sbjct: 500 QLQEHSELGYNVDWQTAEKERPEQQPTRQPRQAADKNSSDQAQARPNAQQSTPTQQQQNS 559

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
             H     S+ +S       +      PS     +               +    + P+ 
Sbjct: 560 TSHSNEHRSNNNSSNVTSARAPQAQETPSAQNPQSSQNIVTPSAPVAPQPTAIAAAQPQA 619



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++LI+A+  EE RV + + N + + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2   KRILINATQNEEIRVALCKGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR--QALLKESNIAQTDSEAVA 104
             R GFLP  EI  +Y      D   + L+KE +      E   
Sbjct: 62  SQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEE 105


>gi|167041416|gb|ABZ06168.1| putative S1 RNA binding domain protein [uncultured marine
           microorganism HF4000_006O13]
          Length = 767

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 203/570 (35%), Positives = 307/570 (53%), Gaps = 18/570 (3%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I+++++  Q ++VQ+ KEERG KGAA+TT++SLAGR+ VLMPN +K   +SRKI  
Sbjct: 107 EKLDIKKLLEEGQEIVVQVSKEERGTKGAALTTFISLAGRFIVLMPNKAKAGGVSRKIMG 166

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + L +    L VP   G+I+RTAG  R+ IE++ D ++L+ +W++++++A+N  AP
Sbjct: 167 QDREQIL-DSLSNLGVPKEAGLIIRTAGLGRSDIELEWDLKHLLGIWNSIKKMAVNVEAP 225

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+++E NLI RA+RD    +ISEIIV  E  +++AK ++K + P+  + +  Y++  P+
Sbjct: 226 ALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDAKKYLKQVTPNNLKKLLYYKETTPL 285

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F +  IE Q++S +  +V LPS G V+I+ TEALVSID+NSG+ST++  IE TAL+TNLE
Sbjct: 286 FTKFQIEHQIESAYSNKVILPSGGSVVIDYTEALVSIDINSGKSTKQSGIESTALKTNLE 345

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           A +EI RQ RLRDL GLIV+DFIDM + +N + VE  LK ++K DRA++ +G IS FGLL
Sbjct: 346 AVDEITRQCRLRDLGGLIVIDFIDMRQHRNQKQVENALKNAVKSDRAKISLGHISKFGLL 405

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQR+R S+ +S  ++C  C G G IRS  S+AL++LR VEE   +    ++I    S
Sbjct: 406 EMSRQRLRPSLGDSAYRICENCSGMGRIRSTESLALAVLRLVEEEARKENTASVIADIPS 465

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           D   YLLN+KR  I + E R  V I ++   EL+   F I+K    +A +    +     
Sbjct: 466 DAATYLLNEKRQWIKDIEQRESVHIILIADPELSSVNFSIKKLRKDEANLAEYKQASYKL 525

Query: 586 QAPSYDKNIE----CVWQDEALLPIPKSESLEDIQDNIVS----------EESTGVIRKR 631
                  N          D++    PK  +  DI D              E       K 
Sbjct: 526 AKTIKQDNASLNPISQAMDKSRNLNPKPVTTWDIDDVQTPNLIDRFMFWLENKQNNKVKA 585

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            + + + R  T     GV  +          +        +       + G    T    
Sbjct: 586 NQGKNKPRSKTRKSTTGVGGNKRKKSTNKRTTPKRRSAKQESPQKTTAKKGPKQKTAKQG 645

Query: 692 VSIPPV---STPEMESSNSSSDPIVKKTRW 718
                       E        D + K  + 
Sbjct: 646 PKREAAKQGPKREAAKQGPKQDAVKKGPKQ 675



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 92/731 (12%), Positives = 207/731 (28%), Gaps = 37/731 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD E + ++Q K NIY AK++R+EPSL A FVD+G
Sbjct: 23  KRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDFG 82

Query: 63  GNRHGFLPFLEIHPDYY---QIPFS--DRQALLKESNIA-----QTDSEAVADDVTHGDV 112
             R+GFLPF E+  +YY    IP    D + LL+E         + +       +T    
Sbjct: 83  SARNGFLPFREVSREYYLSEPIPGEKLDIKKLLEEGQEIVVQVSKEERGTKGAALTTFIS 142

Query: 113 TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE 172
                  L      A                D +SN+  V   +   +      +  I+ 
Sbjct: 143 LAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNL-GVPKEAGLIIRTAGLGRSDIEL 201

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
               + +L +    ++      A              M +    E     + +    K+ 
Sbjct: 202 EWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDA 261

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           K+  + +       ++            +   F+   ++        +      +V +  
Sbjct: 262 KKYLKQVTPNNLKKLLYYKETT-----PLFTKFQIEHQIESAYSNKVILPSGGSVVIDYT 316

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
             +     +         I S                     +            +   +
Sbjct: 317 EALVSIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLIVIDFIDMRQHRNQ 376

Query: 353 VQLDSLHQT-------EVTLPSRGYVIINQT------EALVSIDVNSGRSTREHCIEDTA 399
            Q+++  +        +++L       + +        +L         +        + 
Sbjct: 377 KQVENALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRST 436

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
               L     +  + R  + A +I     D      N    + +K+  +++   + + A 
Sbjct: 437 ESLALAVLRLVEEEARKENTASVIADIPSDAATYLLNEK-RQWIKDIEQRESVHIILIAD 495

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
                +  S +++R              K A  I+  ++    I +++++          
Sbjct: 496 PELSSVNFSIKKLRKDEANLAEYKQASYKLAKTIKQDNASLNPISQAMDKSRNLNPKPVT 555

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                      L+++    +   E +    +                + S      N   
Sbjct: 556 TWDIDDVQTPNLIDRFMFWL---ENKQNNKV--KANQGKNKPRSK-TRKSTTGVGGNKRK 609

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           K  +    P      +   Q       PK ++ +       +++       ++  ++   
Sbjct: 610 KSTNKRTTPKRRSAKQESPQKTTAKKGPKQKTAKQGPKREAAKQGPKREAAKQGPKQDAV 669

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                 DA                      P                T +     P ++ 
Sbjct: 670 KKGPKQDAAKQGPKQDAVKKGPKQDAAKQGPKQDAAKKGP-KKKSEKTRSSKGKSPNITQ 728

Query: 700 PEMESSNSSSD 710
              +  +    
Sbjct: 729 RIKDQESKEKS 739


>gi|330250723|gb|AEC05817.1| RNAse E/G-like protein [Arabidopsis thaliana]
          Length = 1001

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 336 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 395

Query: 65  RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112
           RH F+   +I  +   +   PF D            L      A  + E  + D     +
Sbjct: 396 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 452

Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145
              + +   E                                     +E   I       
Sbjct: 453 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 512

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             +++     +        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L  R
Sbjct: 513 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 570

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D 
Sbjct: 571 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 627

Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + L+  W N+ + A ++            P L++         ++D +   + +++V   
Sbjct: 628 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 687

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++I Q
Sbjct: 688 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 747

Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEALVSIDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++
Sbjct: 748 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 807

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G +
Sbjct: 808 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 867

Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543
            +  +    I + +   L +                I+   S +  +L   KR  +    
Sbjct: 868 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 927

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           +   V I + +        F ++     + +    H+V       +         +   L
Sbjct: 928 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 987

Query: 604 LPIPKSES 611
           +PI K ++
Sbjct: 988 IPIKKEKT 995


>gi|260912463|ref|ZP_05919000.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633435|gb|EEX51588.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295]
          Length = 524

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 152/566 (26%), Positives = 255/566 (45%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D ++ E   E+       GN+Y+AKV ++ P L A FVD
Sbjct: 1   MTSEVVIDV-QQKEISIALLEDKKLVEYQSETREVSFSVGNVYVAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                 GF                                    D   H         S 
Sbjct: 60  V-----GF----------------------------------ERDAFLHYLDLGSQFDSY 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +        ++       ++    +                   +   +Q  + + Q +
Sbjct: 81  AKYLKQVQSDRKKLYPFAKASRLPDLK------------------KDGSVQTTLTSGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +T  LS AGRY +L+P   K    S+  +     + LK++   ++
Sbjct: 123 LVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVSVSSKIKSGEERAR-LKQLIHSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
                GVI+RT    +   E+  + + L + W+   E    S   PHLV+EE +     +
Sbjct: 182 PK-NCGVIVRTVAEGKRVAELDAELKTLTKYWEEAIEKVQKSQKRPHLVFEETSRAVALL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  ++E + ++ ++ P    IV+ Y    PIF    I  Q+ S  
Sbjct: 241 RDLFNPTYENIYVNDEDVFKEVRHYVSMIAPDKVDIVKLYSGKVPIFDNFNITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRD 418
              V      Y+II  TEAL  +DVNSG  TR E   E  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKAVNYKHGAYLIIEHTEALHVVDVNSGNRTRSEKGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDL 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           S  + C  C G G I+S       + R ++  + +       +H H  V  Y+     + 
Sbjct: 421 SVDETCPTCFGKGKIKSSILFTDQLERKIDRLVNKIGVKKFYLHVHPYVAAYINKGFVSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             +++ ++G  +++V   +LA   + 
Sbjct: 481 KRQWQLKYGFGLHIVPSQKLAFLQYE 506


>gi|121605977|ref|YP_983306.1| ribonuclease [Polaromonas naphthalenivorans CJ2]
 gi|120594946|gb|ABM38385.1| RNAse E [Polaromonas naphthalenivorans CJ2]
          Length = 1076

 Score =  288 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 187/517 (36%), Positives = 283/517 (54%), Gaps = 1/517 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           +         +         ++             +    + + E   +    D    + 
Sbjct: 10  QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
             +             Q  I +VI+  Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 70  FKEISKQYFTQGVSVSQARISDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +G  +SR+I      + LKE    LE P GM +I RTAG  R+  E++ D  YL++
Sbjct: 130 PNNPRGGGVSRRIEGEDRAE-LKEAMDKLEYPGGMSIIARTAGIGRSAPELQWDLNYLLK 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  +           L+Y+E +L+ RAIRD +  DI +I+   +  Y +A+ FM  +MP
Sbjct: 189 LWTAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQARQFMAHVMP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   V++Y D  P+F R  IE Q++S +   V LPS G ++I+ TEALVS+DVNS R+ 
Sbjct: 249 EHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D
Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENRLRDALRQD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQ G IS FGL+EMSRQR+R ++ E  +  C  C G+G+IR   S AL ILR ++E 
Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
            L+ +  +++     DV  +LLN+KR+ I + E +  +++ +V    L    + +E+   
Sbjct: 429 SLKDSTASVLCQVPVDVASFLLNEKRSEISKIEMKQRINVLLVPNKTLETPNYRLERLKH 488

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
               ++        +        +    Q++     P
Sbjct: 489 DDPRLDNIEASYKMADEAEDATTVTRRSQEKHNKQEP 525



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 64/109 (58%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +ML++A+  EE R+ ++   ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG
Sbjct: 2   KRMLVNATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
            +RHGFLPF EI   Y+    S  QA + +      +     +    G+
Sbjct: 62  EDRHGFLPFKEISKQYFTQGVSVSQARISDVIREGQELLVQVEKEERGN 110


>gi|30678102|ref|NP_850987.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana]
 gi|25991183|gb|AAN76770.1|AF450479_1 endoribonuclease [Arabidopsis thaliana]
 gi|330250719|gb|AEC05813.1| RNAse E/G-like protein [Arabidopsis thaliana]
          Length = 996

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 331 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 390

Query: 65  RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112
           RH F+   +I  +   +   PF D            L      A  + E  + D     +
Sbjct: 391 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 447

Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145
              + +   E                                     +E   I       
Sbjct: 448 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 507

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             +++     +        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L  R
Sbjct: 508 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 565

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D 
Sbjct: 566 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 622

Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + L+  W N+ + A ++            P L++         ++D +   + +++V   
Sbjct: 623 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 682

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++I Q
Sbjct: 683 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 742

Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEALVSIDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++
Sbjct: 743 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 802

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G +
Sbjct: 803 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 862

Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543
            +  +    I + +   L +                I+   S +  +L   KR  +    
Sbjct: 863 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 922

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           +   V I + +        F ++     + +    H+V       +         +   L
Sbjct: 923 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 982

Query: 604 LPIPKSES 611
           +PI K ++
Sbjct: 983 IPIKKEKT 990


>gi|289671957|ref|ZP_06492847.1| ribonuclease E [Pseudomonas syringae pv. syringae FF5]
          Length = 746

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 209/555 (37%), Positives = 292/555 (52%), Gaps = 16/555 (2%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN
Sbjct: 9   KEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 68

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW
Sbjct: 69  NPRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLW 127

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP Y
Sbjct: 128 TAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQY 187

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+ 
Sbjct: 188 ASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKG 247

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+ DRA
Sbjct: 248 SDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRA 307

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +EE  L
Sbjct: 308 RVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEAL 367

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     +       V  +LLN+KR +I + E R    I ++   +L    F +++     
Sbjct: 368 KDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDS 427

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                     S +         E                 E       +  +  V  +  
Sbjct: 428 -----PEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAA 482

Query: 633 RRRRRRRPATDHHDAGVVSD----------VSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                  P    H+  +                   V         E     N       
Sbjct: 483 APAPTPAPTPVAHEPSLFKGLVKSLVSLFATKEEPVVPVVVEKPVAEQRPARNEERRNGR 542

Query: 683 AHGFTENYDVSIPPV 697
                 N        
Sbjct: 543 QQSRGRNNRRDEERK 557


>gi|167041972|gb|ABZ06709.1| putative S1 RNA-binding domain protein [uncultured marine
           microorganism HF4000_141E02]
          Length = 776

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 200/567 (35%), Positives = 307/567 (54%), Gaps = 16/567 (2%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I+++++  Q ++VQ+ KEERG KGAA+TT++SLAGR+ VLMPN +K   +SRKI  
Sbjct: 107 EKLDIKKLLEEGQDIVVQVSKEERGTKGAALTTFISLAGRFIVLMPNKAKAGGVSRKIMG 166

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + L +    L VP   G+I+RTAG  R+ IE++ D ++L+ +W++++++A+N  AP
Sbjct: 167 QDREQIL-DSLSNLGVPKEAGLIIRTAGLGRSDIELEWDLKHLLGIWNSIKKMAVNVEAP 225

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+++E NLI RA+RD    +ISEIIV  E  +++AK ++K + P+  + +  Y++  P+
Sbjct: 226 ALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDAKKYLKQVTPNNLKKLLYYKETTPL 285

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F +  IE Q++S +  +V LPS G V+I+ TEALVSID+NSG+ST++  IE TAL+TNLE
Sbjct: 286 FTKFQIEHQIESAYSNKVILPSGGSVVIDYTEALVSIDINSGKSTKQSGIESTALKTNLE 345

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           A +EI RQ RLRDL GL+V+DFIDM + +N + VE  LK ++K DRA++ +G IS FGLL
Sbjct: 346 AVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQVENALKNAVKSDRAKISLGHISKFGLL 405

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EMSRQR+R S+ +S  ++C  C G G IRS  S+AL++LR VEE   +    ++I    S
Sbjct: 406 EMSRQRLRPSLGDSAYRICENCSGMGRIRSTESLALAVLRLVEEEARKENTASVIADIPS 465

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           D   YLLN+KR  I + E R  V I ++   EL+   F I++    +A +    +     
Sbjct: 466 DAATYLLNEKRQWIKDIEQRESVHIILIADPELSSVNFSIKRLRKDEANLAEYKQASYKL 525

Query: 586 QAPSYDKNIE----CVWQDEALLPIPKSESLEDIQDNIVS----------EESTGVIRKR 631
                  N          D++    PK  +  DI D              E       K 
Sbjct: 526 AKTIKQDNASLNPISQAMDKSRNLNPKPVTAWDIDDVQTPNLIDRFMFWLENKQNNKVKA 585

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            + + + R  T     GV  +          +        +       + G         
Sbjct: 586 NQGKNKPRSKTRKSTTGVGGNKRKKSTNKRTTPKRRSVKQESPQKKTAKKGPKQGAAKQG 645

Query: 692 VSIPPVST-PEMESSNSSSDPIVKKTR 717
                    P+ E++         K  
Sbjct: 646 PKREAAKQGPKREAAKQGPKREAAKQG 672



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 95/738 (12%), Positives = 209/738 (28%), Gaps = 37/738 (5%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   ++ +LD E + ++Q K NIY AK++R+EPSL A FVD+G
Sbjct: 23  KRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDFG 82

Query: 63  GNRHGFLPFLEIHPDYY---QIPFS--DRQALLKESNIA-----QTDSEAVADDVTHGDV 112
             R+GFLPF E+  +YY    IP    D + LL+E         + +       +T    
Sbjct: 83  SARNGFLPFREVSREYYLSEPIPGEKLDIKKLLEEGQDIVVQVSKEERGTKGAALTTFIS 142

Query: 113 TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE 172
                  L      A                D +SN+  V   +   +      +  I+ 
Sbjct: 143 LAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNL-GVPKEAGLIIRTAGLGRSDIEL 201

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
               + +L +    ++      A              M +    E     + +    K+ 
Sbjct: 202 EWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDA 261

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           K+  + +       ++            +   F+   ++        +      +V +  
Sbjct: 262 KKYLKQVTPNNLKKLLYYKETT-----PLFTKFQIEHQIESAYSNKVILPSGGSVVIDYT 316

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
             +     +         I S                     +            +   +
Sbjct: 317 EALVSIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQ 376

Query: 353 VQLDSLHQT-------EVTLPSRGYVIINQT------EALVSIDVNSGRSTREHCIEDTA 399
            Q+++  +        +++L       + +        +L         +        + 
Sbjct: 377 KQVENALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRST 436

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
               L     +  + R  + A +I     D      N    + +K+  +++   + + A 
Sbjct: 437 ESLALAVLRLVEEEARKENTASVIADIPSDAATYLLNEK-RQWIKDIEQRESVHIILIAD 495

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
                +  S +R+R              K A  I+  ++    I +++++          
Sbjct: 496 PELSSVNFSIKRLRKDEANLAEYKQASYKLAKTIKQDNASLNPISQAMDKSRNLNPKPVT 555

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                      L+++    +   E +    +                + S      N   
Sbjct: 556 AWDIDDVQTPNLIDRFMFWL---ENKQNNKV--KANQGKNKPRSK-TRKSTTGVGGNKRK 609

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           K  +    P      +   Q +     PK  + +       +++       ++  +R   
Sbjct: 610 KSTNKRTTPKRRSVKQESPQKKTAKKGPKQGAAKQGPKREAAKQGPKREAAKQGPKREAA 669

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                 +A                      P         +  A              S 
Sbjct: 670 KQGPKREAAKQGPKRDAVKKGPKREAAKQGPKQDAAKKGPKQDAVKKGPKKKSEKTRSSK 729

Query: 700 PEMESSN-SSSDPIVKKT 716
            +  ++     D   K+ 
Sbjct: 730 GKSPNTTQRIKDQESKEK 747


>gi|21672611|ref|NP_660678.1| ribonuclease E [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25091169|sp|Q8K9J9|RNE_BUCAP RecName: Full=Ribonuclease E; Short=RNase E
 gi|21623243|gb|AAM67889.1| ribonuclease E [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 968

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 188/625 (30%), Positives = 305/625 (48%), Gaps = 9/625 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +  S ++ + I        E S+ +   D            
Sbjct: 12  EELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYGMEKHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +          +  I+++++  Q L+VQI KEERG KGAA+TT+++LAG Y VLMP
Sbjct: 72  EISKNYFPENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTTFITLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  K   ISR++      + LKE+   L++P  MG+I+RTAG  ++   ++ D    ++ 
Sbjct: 132 NNPKIAGISRRVEGSDRIE-LKELLSSLKIPEKMGLIIRTAGVGKSIKSLQWDLSLRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ +    AP L+Y+E N+I RA RD   +DI EI++   K    A++ +  L  P
Sbjct: 191 WNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDNPKILDIAREHITALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q+DS  Q +V LPS G ++++ TEAL +ID+NS RST
Sbjct: 251 DFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVDTTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE TA  TNLEA EEI+RQLRLRDL GLIV+DFIDM    + + +E KL+E +++D
Sbjct: 311 RGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTISHQKIIENKLREIVRED 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+ SS+ ES+  +C  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +      ++  YLLN+KR  +   E R  G    +V    +    + + +  
Sbjct: 431 ALKENTYEVHAIVPIEIACYLLNEKREAVYAIEKRQAGGKTIIVPNKNMKTPHYLVSRIR 490

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + + +  + + +  +   ++   + +   +  L    +            +E      
Sbjct: 491 KGEQIRSMSYCLSNVRKNKIFNNIKKEIVDKKHKLNSTLTNISLSDDSFDKQKEEKEKFL 550

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS-DITNHNLLENGAHGFTE 688
           +++        A  ++       +  I+N            S         +N      E
Sbjct: 551 RKKNYNNSIINALFNNKNLFFKFIVWIKNSFLKKHIFVKNESFKRNIFQNKKNILFAKKE 610

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV 713
            ++            SS  ++    
Sbjct: 611 EFNSIEEIHKKDNQVSSIDNNKKKQ 635



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+A F+DYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            +HGFLP  EI  +Y+
Sbjct: 62 MEKHGFLPLKEISKNYF 78


>gi|87118929|ref|ZP_01074827.1| ribonuclease E [Marinomonas sp. MED121]
 gi|86165320|gb|EAQ66587.1| ribonuclease E [Marinomonas sp. MED121]
          Length = 1029

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 202/569 (35%), Positives = 308/569 (54%), Gaps = 9/569 (1%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++        P     +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL
Sbjct: 68  KEISKTYFSKKPNHGDGRINIKDVLSEGQEVVVQVDKEERGNKGAALTTFVSLAGRYLVL 127

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE   GL +P   G+I+RTAG  R+  E++ D +YL 
Sbjct: 128 MPNNPRAGGISRRIDGDDRTQ-LKEAMSGLNMPDNGGLIVRTAGVGRSTEELQWDLDYLN 186

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            LW+++   A    AP L+Y+E N++ RAIRD   +DI E+++  +  Y++A +F+  +M
Sbjct: 187 TLWNSITGAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSVYQDAMNFVMQVM 246

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P +   ++QY D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+
Sbjct: 247 PHFKSRIKQYTDQTPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARA 306

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM   +N + VE ++K++L+ 
Sbjct: 307 TKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVENRMKDALEA 366

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQ+G IS FGLLEMSRQR+R S+ E++  VC  C G G+IR   S+ALS+LR +EE
Sbjct: 367 DRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCTGQGFIRDVESLALSVLRLIEE 426

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     I       V  +LLN+KR  I + E R  V I +V    +    F +E+  
Sbjct: 427 ECAKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNHVHIILVPNPHMETPHFEVERIR 486

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              + V       +  + P      E    D+         S+          +   V +
Sbjct: 487 DDSSSVVQNENSYTLVETPEQPP-YEPRQTDQETRQKAAVTSIAPAAPAPAPSDIKPVSK 545

Query: 630 KRRRRRRRRRP-------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           K +     +R          +  +    +  S+ +    ++ +     +   N N+ +  
Sbjct: 546 KAQPVGFFKRILNAIFGVEENKEEKQTENKPSTKKTNPRNNRNTKNRNTRGNNRNVKQVH 605

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                     S       + E+  ++  P
Sbjct: 606 TEEVESKDSRSTRKSRREQAEAKTNNRKP 634



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 54/75 (72%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVDYG +
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESGSREQTKANIYKGRITRIEPSLEAAFVDYGAD 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI   Y+
Sbjct: 61 RHGFLPLKEISKTYF 75


>gi|296085058|emb|CBI28473.3| unnamed protein product [Vitis vinifera]
          Length = 934

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 140/609 (22%), Positives = 259/609 (42%), Gaps = 63/609 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL D  + EL  E         ++YL  VT++ P +  AFV+ G  
Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIG-- 401

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
                    I                              DD    +V    D  +++  
Sbjct: 402 ---------IQ--------------------------FAHDDFEEHEVEDDFDVLIKKDL 426

Query: 125 PIANFSQETE-EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +    ++E   + +    +   +   +         ++          ++    ++VQ
Sbjct: 427 NGSIVDHDSETINNFLPVELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQKGTKIIVQ 486

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           +VKE  G KG  +T Y  L  R+ VL+   ++   +S+KI+     +    +      P 
Sbjct: 487 VVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIG-VSKKISGVERTR--LRVIAKTLQPK 543

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGN 293
           G G+ +RT  A  T  E+++D E L+  W N+ E A ++              +++    
Sbjct: 544 GFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILHRAMG 603

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
                ++D + + +  ++V   + Y E  ++++ + P     V  Y    P+F    IE 
Sbjct: 604 QTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEFNIEE 663

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIA 411
           +++++    V LP+ G ++I QTEALVSIDVN G          E   L  NL AA++IA
Sbjct: 664 EINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAAKQIA 723

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           R+LRLRD+ G+IVVDFIDM +  N R V +++K+++++DR+ V+V  +S  GL+E++R+R
Sbjct: 724 RELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 783

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIV 521
           +R SV    ++ C+ C G G + +  +    I + +   L                  I+
Sbjct: 784 VRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEICRLLAMTEEKADPENPNSWPRFIL 843

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                +  YL + KR  +    +   V I + +        F ++  +  +  +++    
Sbjct: 844 MVDRFMCNYLTSGKRTRLAILSSSLKVWILLKVARGFTRGAFEVKPFTDDKVNISSHQGP 903

Query: 582 GSDSQAPSY 590
            S  +    
Sbjct: 904 ISMLRPTEA 912


>gi|332977604|gb|EGK14372.1| ribonuclease [Psychrobacter sp. 1501(2011)]
          Length = 1373

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 197/545 (36%), Positives = 302/545 (55%), Gaps = 16/545 (2%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R+  I+++IK    L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN  KG  ISR+I
Sbjct: 81  NPREENIRKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPKGGGISRQI 140

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
           +  +     + +   L++P GM VI+RTAG  +T+ +++ D  +L+ +W+ +++      
Sbjct: 141 SGKLREDMKR-MLGNLDLPKGMSVIVRTAGIGKTQEDLQHDLNHLLNIWNAIQDQNKKYA 199

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           +P LV++E  ++ RA+RD    DISEI +  E+ + EA+ F+K +MP+    +R+Y D  
Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDISEIWIDNEEAFIEAETFIKAVMPTQIDKLRKYTDFE 259

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           P+F    +E Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+   + +TA  TN
Sbjct: 260 PMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGADVAETAYHTN 319

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L E+ K DRARVQ G IS FG
Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMSDHKHQKEVEKRLVEATKYDRARVQFGEISRFG 379

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L+EMSRQR+R S+ EST  +C  C G G IR   S++LSI+R +E+  L+     +    
Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQTALKERHGEVQAEV 439

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
            +D+  +LLN+KR ++V  E   G  I ++    L    F I       A  +      +
Sbjct: 440 PTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHLESPNFNIHFNHHGFAPASYERVTDT 499

Query: 584 DSQAPS---YDKNIECVWQDEAL-----LPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
             Q  S   Y+ + +    +         P   + +      N V  +          + 
Sbjct: 500 QQQETSGLGYEVDWQTAESERPEQQPIRQPRQSAGNAPTAAANTVPTKQAATTPAPTAKN 559

Query: 636 RRRRPAT----DHHDAGVVSDVSS---IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +  +P T    +      V+ +S+          S  +    +      ++  GA     
Sbjct: 560 QAPQPQTQAPVEAAKPSAVAWLSNLFAPTPQAQMSATVSSADAAQAIEAIVNTGAQSRGA 619

Query: 689 NYDVS 693
              VS
Sbjct: 620 FGQVS 624



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++LI+A+H EE RV + + N + + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2   KRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             R GFLP  EI  +Y  +  + R+  +++      +     +    G+
Sbjct: 62  SKRQGFLPVREIASEY--LSGNPREENIRKLIKEGDELIVQVEKEERGN 108



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 6/145 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E  +      +  ++  +     +  ++     + E        +  E        + ST
Sbjct: 660 ESDNDKDRRRSRNNRSRNKYDKRAKPESRRRQPEKEDRKSNSSVDKSETESSASSQDNST 719

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                +R    RR         G +    + Q     S D   +  D    +    G   
Sbjct: 720 AKELPKREANSRRDSR------GPIERGETKQPQGKSSQDNRAKQDDRNKSSDRNGGRAQ 773

Query: 686 FTENYDVSIPPVSTPEMESSNSSSD 710
              N D +   +   E E++   S+
Sbjct: 774 NERNVDPNEVNLRVTEAETTLKKSE 798


>gi|326201572|ref|ZP_08191443.1| ribonuclease, Rne/Rng family [Clostridium papyrosolvens DSM 2782]
 gi|325988172|gb|EGD48997.1| ribonuclease, Rne/Rng family [Clostridium papyrosolvens DSM 2782]
          Length = 494

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 127/565 (22%), Positives = 238/565 (42%), Gaps = 77/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N++++D S   E RV +L D  + E+  E    + + GNIY  KV+ V P +QAAF+D
Sbjct: 1   MVNEIIVDVS-PGEIRVGILEDKELAEIHIERTSHQGLVGNIYRGKVSSVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++ FL   +       IP                D   V+ +    ++T       
Sbjct: 60  IGYEKNAFLYVGD------AIPK----------KEYSDDETEVSSNYEEYNITDILKVGQ 103

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E    +      T+                                +      +  R ++
Sbjct: 104 EITVQVIKEPIGTKGP------------------------------RVSTHITLPGRNLV 133

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L+        ++     T                               K + E  +   
Sbjct: 134 LLPNADYIGISRRIENDTE--------------------------RQKLKKIAEKLKPQN 167

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +   +  +      +    ++    +   ++ ++          P  ++++ NLI R++R
Sbjct: 168 MGLIVRTVSEGKEEADFVEDVSFLLKLWAKIKESE----NKGPVPRCIHKDINLIYRSVR 223

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+  D+++ I++ EK Y +  + ++++ P     V  ++  + IF    IE +++    
Sbjct: 224 DLFTWDVNKFIINNEKEYLKVLELVEMISPLLKSRVELFQKDYNIFDYYQIETKIERALS 283

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L   GY+II++TEAL  IDVN+G+   E  +E+T L+TN+EA  EIA+QLRLRD+ 
Sbjct: 284 RKVWLKCGGYIIIDKTEALTVIDVNTGKFVGESNLEETVLKTNVEATREIAKQLRLRDIG 343

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G++++DFIDM   ++ + V   LK+SLK DR +  V  ++  GL+EM+R++IR  +    
Sbjct: 344 GIVIIDFIDMNNSEHQQLVLDSLKQSLKSDRTKTIVLGMTELGLVEMTRKKIRQELSTVM 403

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           +  C  C GAG + +  + A++ILR V E++   +     +  H  V   + +     + 
Sbjct: 404 SCDCPVCDGAGRVYTGETNAMNILREVREHINCTSVKKFKLEVHPSVAPVIEDNIERFLR 463

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
            +       + V    ++    + I
Sbjct: 464 NFTDNKDKKVKVTAVSDIRPAGYRI 488


>gi|115475892|ref|NP_001061542.1| Os08g0323600 [Oryza sativa Japonica Group]
 gi|38637407|dbj|BAD03665.1| putative endoribonuclease E [Oryza sativa Japonica Group]
 gi|113623511|dbj|BAF23456.1| Os08g0323600 [Oryza sativa Japonica Group]
 gi|222640346|gb|EEE68478.1| hypothetical protein OsJ_26881 [Oryza sativa Japonica Group]
          Length = 1085

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 150/659 (22%), Positives = 276/659 (41%), Gaps = 77/659 (11%)

Query: 5    MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
            ++I++S     R+ VL D ++ EL  E         +IYL  VT++ P +  AFVD G +
Sbjct: 415  IVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTKLVPHMGGAFVDIGLS 474

Query: 65   RHGFLPFLEIHPD---YYQIPF-------------SDRQALLKESNIAQTDSEAVADDVT 108
            R   +   + + D   Y QI                D     ++ +   TD E   ++  
Sbjct: 475  RPSLMSIKQ-NRDPFVYPQIVKNAKRDSANFSDYNDDSLPTYEDEDDDMTDGELADEEND 533

Query: 109  HGDVTIPNDHSLEEVA-------------------------------PIANFSQETEEES 137
                  P +   E                                     +   E  E+ 
Sbjct: 534  DESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEEKDDEIDDHMEDEYNEDL 593

Query: 138  IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
            +    ++V ++++ +                     ++    ++VQ+VKE  G+KG  ++
Sbjct: 594  LPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQVVKEGLGSKGPTLS 653

Query: 198  TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
             +  L  R+ +L+ +      +S+KIT     +   +    L  P G  +  RT  A  +
Sbjct: 654  PFPCLRSRFWILV-SRGNKVGVSKKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHS 710

Query: 258  KIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDI 307
              E+++D + L+  W  + E A ++              +++         ++D + + +
Sbjct: 711  WEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKV 770

Query: 308  SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
              ++V   + Y E  ++++ + P     V  YE   PIF    IE ++D++    V L +
Sbjct: 771  KRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHN 830

Query: 368  RGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425
             G ++I QTEALVSIDVN G S   +    E   L+ NLEAA++IAR+LRLRD+ G+IVV
Sbjct: 831  GGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQIARELRLRDIGGIIVV 890

Query: 426  DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485
            DFIDM +  N + V +++K++++KDR+ V V  +S  GL+E++R+R+R SV    ++ C 
Sbjct: 891  DFIDMTDDTNKKLVFEEMKKAVEKDRSTVGVSELSKLGLMEITRKRVRPSVTFMISEPCP 950

Query: 486  YCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQK 535
             C G G + +  +    I R +   L                  ++    ++  YL + K
Sbjct: 951  CCHGIGRVEALDTSFSKIEREICRRLAASGHKSDPEKPKSWPRFVLRVDHEMCTYLTSGK 1010

Query: 536  RATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALVNTGHKVGSDSQAPSY 590
            +  +    +   V I + I    A   F +    ++    +    T      ++ +P  
Sbjct: 1011 KTKLGLLSSSLKVWILLKIARGFARGAFELLPYSDEKETDERKEETSESPPKEAGSPKL 1069


>gi|171912987|ref|ZP_02928457.1| cytosolic axial filament protein cafA and ribonuclease E
           [Verrucomicrobium spinosum DSM 4136]
          Length = 529

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 132/575 (22%), Positives = 247/575 (42%), Gaps = 72/575 (12%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +++I+     E RV +L +  +EE   E      + G+IY  ++  +E  L+A F+D G 
Sbjct: 24  RIVIN-CEKLENRVALLENGVLEEYSVERVGTTHLVGSIYKGRIKNIEQGLKAMFIDIGL 82

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
            ++ FL F +       IP +   A ++E  I +  S      +T  D+        E +
Sbjct: 83  EKNAFLHFWD------AIPAA-LDAGMEE--INRGGSGKKKKAITAKDIPDLYPVGSEIL 133

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +       +   + +                                       L  +
Sbjct: 134 VQVTKGPVGNKGPRVTT------------------------------------NISLAGR 157

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           ++     N    ++  +        L                             L    
Sbjct: 158 LLVLMPLNDSCGISRKIDDPKERLRLR---------------------RIIEKLSLPEGM 196

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           G+ +    +   +    I RD   L+  W ++ E      AP   +EE ++ +R +RD  
Sbjct: 197 GVILRTEAS--GKRARHIIRDLSILVEQWKDIAERRDTQKAPVCCFEEPDVFERTVRDFL 254

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            +D+ EI+   +   +  K+ +  +     R +  +  P  +F +  I+ Q+DS    +V
Sbjct: 255 TEDLDEIVCDDQAVVQRMKELVAPISRRAQRRINYFPGPGSLFEKYHIQRQIDSAFYRQV 314

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
            L   GY++I+QTEAL+SIDVN+GR+    + ++   L TN+EAA E+ARQLRLR++ GL
Sbjct: 315 WLRCGGYIVIDQTEALISIDVNTGRNKGAGNNVDKVILDTNMEAAAEVARQLRLRNMGGL 374

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           +VVDFIDM+ +K+ ++V K + +  ++D+A+ Q+  IS FGL+EM+RQR+  S+ ++  +
Sbjct: 375 VVVDFIDMKGRKDQQAVYKAMIDHTQRDKAKTQILPISQFGLMEMTRQRLHESLSDAMYE 434

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQ--YTAHNIIVHTHSDVVLYLLNQKRATIV 540
            C +CKG G I++  ++++ + R +   + +      +++V  H DV+  L       +V
Sbjct: 435 ECPHCKGHGQIKTPLTMSVELQRRLSSIMSRLPEHDRDVLVVIHPDVMQRLRTSDDQILV 494

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
           E E ++   +          + F I        + 
Sbjct: 495 ELERKYQARMTFRTDPNYTREQFLIANAKTGDEIK 529


>gi|149926733|ref|ZP_01914993.1| ribonuclease, Rne/Rng family protein [Limnobacter sp. MED105]
 gi|149824662|gb|EDM83878.1| ribonuclease, Rne/Rng family protein [Limnobacter sp. MED105]
          Length = 492

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/420 (30%), Positives = 209/420 (49%), Gaps = 1/420 (0%)

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
           V+++ + +  +     +       I++++   Q ++VQ+ K+  G KGA +TT +SLAGR
Sbjct: 71  VADLWEHRTYNHHQSKQNGNPPPAIEKMVFEGQTIIVQVSKDPLGTKGARLTTQISLAGR 130

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
             V +P         R   N  +R+ L+     L      G I+RT     T  E+  D 
Sbjct: 131 MLVHLPQDPHIGVSQRI-ENEGEREELRAKLTRLLPENTGGFIIRTHAEEATDEELTADV 189

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
            YL   W  + EL     AP L+YE+  + +R +RDL   D   I++  ++  +    F 
Sbjct: 190 NYLRTRWREMLELTRTKPAPSLIYEDLTMAQRVVRDLVSADTQAILIDSKETLKNLLTFA 249

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           +         ++ ++   P+F    IE +L       V L S GYVII+QTEAL +IDVN
Sbjct: 250 ETYAQETKDRLQLHQGERPLFELYNIEDELQKALGRRVELKSGGYVIIDQTEALTTIDVN 309

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           +G        E+T  +TNLEAA  IARQLRLR+L G+IV+DFIDM  +++ ++V  +L++
Sbjct: 310 TGGFIGARNFEETVFKTNLEAAHAIARQLRLRNLGGIIVIDFIDMSTEEHKKAVLSELQK 369

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +L +DRAR  V   S  GL+EM+R+R R S+     + C  C+G G +++  +VA  I+R
Sbjct: 370 ALDRDRARTSVTDFSALGLVEMTRKRTRESLAHLLCEPCPSCQGKGQVKTAQTVAYEIMR 429

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     Q+      +     V+   L ++   +   E   G  I + +      + + I
Sbjct: 430 EIVRESRQFNPKEFRILASPAVIDLFLEEEAQHLGMLEEFVGKPITLQVDNLFVQEHYDI 489



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MANK-MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M N+ +L++ +  +ETRV +++   V+EL  E    + I GN+YL KV RV P +Q+AFV
Sbjct: 1  MINEQILVNVT-PQETRVAIVQHGAVQELHIERTSTRGIVGNVYLGKVVRVLPGMQSAFV 59

Query: 60 DYGGNRHGFLPFLEI 74
          D G  R  FL   ++
Sbjct: 60 DIGLERAAFLHVADL 74


>gi|225447486|ref|XP_002267175.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1019

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 149/657 (22%), Positives = 279/657 (42%), Gaps = 74/657 (11%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL D  + EL  E         ++YL  VT++ P +  AFV+ G +
Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIGSS 403

Query: 65  RHG------------FLPFL------EIHPDYYQI---PFS--------DRQAL-LKESN 94
           R              F PF       +    +  +   P +        D +A  L+E +
Sbjct: 404 RPSLMDIKRSREPFIFPPFHHGTKEKDNGSVFNTLRENPIAHENEHTSYDVEADDLREVD 463

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
                 +   DD    +V    D  +++    +       E      ++ + ++++    
Sbjct: 464 FQDDPVQFAHDDFEEHEVEDDFDVLIKKDLNGSIVDHGGVEVDFDDYSDGIENHIDSETI 523

Query: 151 ------DVKGGSPEDVPKKFKRQY---------CIQEVIKNRQILLVQIVKEERGNKGAA 195
                 +++ G  +                        ++    ++VQ+VKE  G KG  
Sbjct: 524 NNFLPVELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPT 583

Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255
           +T Y  L  R+ VL+   ++   +S+KI+     +    +      P G G+ +RT  A 
Sbjct: 584 LTAYPKLRSRFWVLLTCCNRIG-VSKKISGVERTR--LRVIAKTLQPKGFGLTVRTVAAG 640

Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCK 305
            T  E+++D E L+  W N+ E A ++              +++         ++D + +
Sbjct: 641 HTLEELQKDLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILHRAMGQTLSVVQDYFNE 700

Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365
            +  ++V   + Y E  ++++ + P     V  Y    P+F    IE +++++    V L
Sbjct: 701 KVESMVVDSPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPL 760

Query: 366 PSRGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
           P+ G ++I QTEALVSIDVN G          E   L  NL AA++IAR+LRLRD+ G+I
Sbjct: 761 PNGGSLVIEQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAAKQIARELRLRDIGGII 820

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           VVDFIDM +  N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ 
Sbjct: 821 VVDFIDMLDDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 880

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLN 533
           C+ C G G + +  +    I + +   L                  I+     +  YL +
Sbjct: 881 CSCCHGTGRVEALETSFSKIEQEICRLLAMTEEKADPENPNSWPRFILMVDRFMCNYLTS 940

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
            KR  +    +   V I + +        F ++  +  +  +++     S  +    
Sbjct: 941 GKRTRLAILSSSLKVWILLKVARGFTRGAFEVKPFTDDKVNISSHQGPISMLRPTEA 997


>gi|212633400|ref|YP_002309925.1| ribonuclease G [Shewanella piezotolerans WP3]
 gi|212554884|gb|ACJ27338.1| Ribonuclease E and G [Shewanella piezotolerans WP3]
          Length = 502

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 121/562 (21%), Positives = 212/562 (37%), Gaps = 80/562 (14%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++LI+ +   E RV ++    ++E+  E   K+ + GNIY  KV+RV P +QAAFVD G 
Sbjct: 18  ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 76

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           ++  FL   +I P  +    +D +               +A+ V  G   +         
Sbjct: 77  DKAAFLHASDIVP--HTECVADVEK-------GNFVVRDIAELVRQGQDIMVQVVKDPLG 127

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
              A  + +    S         S+V   +    E++  + K+                 
Sbjct: 128 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEIRARLKK----------------I 171

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
                  + G  + T    AG   ++     +     R++   V  +  +     L    
Sbjct: 172 TEPFVDDDGGFIIRTAAESAGEDELV-----QDAAFLRRVWAKVSERRKRRGVSLLYQDL 226

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            + V +          +I+ D               +  +A  L +  G +    + D  
Sbjct: 227 ALPVRIVRDFVGTELDQIQVDSNQTYEELQQFAHEFMPEIANKLEHYNGPIPIFDLYD-- 284

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
                                                          +E ++      +V
Sbjct: 285 -----------------------------------------------VENEVQRALGRKV 297

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY+II+QTEA+ ++D+N+G       +E+T   TNLEA + IARQLRLR+L G+I
Sbjct: 298 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGII 357

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           ++DFIDM+E ++ + V   L+ +L  DR +  +   S  GL+EM+R+R R S+       
Sbjct: 358 IIDFIDMQEAEHQKRVLSSLEAALSVDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 417

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G +++  +V+  I R +      Y A   +V+    V   L   +   + E E
Sbjct: 418 CPSCLGTGSLKTVETVSYEIFREIIRLNRGYDADEFLVYCAPAVYHSLKGDESHLLAELE 477

Query: 544 ARFGVSINVVIGIELADKLFYI 565
                 + +      A   F +
Sbjct: 478 VYISKRVRLQNEPMYAQNKFDV 499


>gi|149376751|ref|ZP_01894509.1| Ribonucleases G and E [Marinobacter algicola DG893]
 gi|149358990|gb|EDM47456.1| Ribonucleases G and E [Marinobacter algicola DG893]
          Length = 1047

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 211/645 (32%), Positives = 336/645 (52%), Gaps = 19/645 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------VE 150
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +       ++
Sbjct: 12  EELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           ++     +  P + + +  I++V+   Q +++Q+ KEERGNKGAA+TT++SLAGRY VLM
Sbjct: 72  EISKEYFKKSPGQIEGKINIKDVVAEGQEVIIQVDKEERGNKGAALTTFISLAGRYLVLM 131

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PN  +   ISR+I      + LKE    ++VP  MG+I+RTAG  RT  E++ D +YL++
Sbjct: 132 PNNPRAGGISRRIEGEERAQ-LKEAMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQ 190

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            W+ + + A    AP L+++E N+I RA+RD   +DI E+++     Y +  +F++ +MP
Sbjct: 191 FWEAISQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAGTVYEDVLNFVRAVMP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           S+   ++ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+T
Sbjct: 251 SFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           + H IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   K+ R VE+K++E+L+ D
Sbjct: 311 KGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEID 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RARVQVG IS FGLLEMSRQR+R S+ E+ ++VC  C+G G IR   S+ALSI+R + E 
Sbjct: 371 RARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +     +       V  +LLN+KR  + + EAR  V + VV    +    F I +   
Sbjct: 431 SSKEKTGQVRAVVPVAVATFLLNEKRKQLADIEARQEVEVVVVPAPHMETPHFEILRMRD 490

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----------LLPIPKSESLEDIQDNIV 620
            +A V          +    ++ I      +           + P+  + + E       
Sbjct: 491 DEAGVEHVSSYQVAQEYSEREEEIFEAPAAQPPVREQAAVKAIRPVAPAPTPEKAAQETP 550

Query: 621 SEESTGVIRKRRRRRRRRRPATD--HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           +E++ G+ RK  R+        +            +        + D           + 
Sbjct: 551 AEQTEGLFRKLGRKIADFFSGEEVIGEPPVKREHTAGSNRDDRRTQDRQDRRKSRVARDD 610

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +G     +          +   + +   +    +     + ++
Sbjct: 611 NRSGNRSGADRRQAGANRGDSSRSDDNRGRNRGANRNRGDGQSQQ 655



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 57/78 (73%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2  KRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLP  EI  +Y++
Sbjct: 62 AERHGFLPLKEISKEYFK 79


>gi|308535182|ref|YP_002137523.2| ribonuclease, Rne/Rng family [Geobacter bemidjiensis Bem]
 gi|308052527|gb|ACH37727.2| ribonuclease, Rne/Rng family [Geobacter bemidjiensis Bem]
          Length = 919

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 190/540 (35%), Positives = 294/540 (54%), Gaps = 5/540 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++  +   D E   ++   G++       +E+    A      ++   +  
Sbjct: 12  PEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLKKLGFLQM 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                 N         +    +  R+  IQEV++  Q L+VQ+ K ER NKG+A+TTY+S
Sbjct: 72  GELHPENW----KWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTTYVS 127

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP  S    ISRK+    +RK LKEI   + +P G G I+RT    RT+ E+
Sbjct: 128 LPGRYMVLMPG-SDSAGISRKVEGEGERKKLKEIIAEMAIPEGYGYIIRTEAMGRTREEL 186

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D + L+  +  +R   L      ++Y+E  LI R IRD +  DI E++V  +  Y + 
Sbjct: 187 QKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVYNDV 246

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           +D +K + P++ ++V+ +++  PIF R  +E Q+D +++ +V L S G + I  TEALVS
Sbjct: 247 RDCLKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVS 306

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+ST E  +EDTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N  VEK
Sbjct: 307 IDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNSEVEK 366

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK +LK D+ARV V  IS FGLLEMSRQRIR ++ +++T  C +C G G ++S  ++AL
Sbjct: 367 TLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAMAL 426

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S LR V     + T   ++     +V  YLLN+KR  + + E+ + + + V         
Sbjct: 427 SFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTVKGKPSYLLN 486

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              +E     +A      +  +  +A   ++  +    +         ++ E      V 
Sbjct: 487 QMDLELIKREKAADELPLEKPAHGRALPKEEAAQEPAAEGRKKKKKGKKAQEPEAAAHVE 546


>gi|261209928|ref|ZP_05924228.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           sp. RC341]
 gi|260840993|gb|EEX67525.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           sp. RC341]
          Length = 489

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 124/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + ES   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++ K+              
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                +   Y         G  I R      + K L + A  L+
Sbjct: 157 ---------------------VVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +  R+   +R+ +  +      +                       + +   + 
Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +      E     E       +    L   +               +  +E +++    
Sbjct: 230 KILVDSRQEYENLKEFTSEYVPELTAKLDLYHGDKPIFDMYDTENEIQRSLERKVE---- 285

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   ++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  SV   ILR +      Y A   +V+    V   L  ++   + 
Sbjct: 402 CSTCPTCEGRGSVKTVESVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|296160579|ref|ZP_06843394.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
 gi|295889105|gb|EFG68908.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
          Length = 489

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 197/406 (48%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQHQAPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   L      G I+RT     T  E+  D  YL + W  +    
Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAGDVAYLRKTWATILSQG 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++ NL +R +RD    + S I V   + Y+   DF     P+ +  +  Y
Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIESEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++   V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|269961311|ref|ZP_06175677.1| cytoplasmic axial filament protein [Vibrio harveyi 1DA3]
 gi|269833977|gb|EEZ88070.1| cytoplasmic axial filament protein [Vibrio harveyi 1DA3]
          Length = 489

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 211/565 (37%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E ++ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGVLQEVHIERESRRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + E+   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAENEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++ K+              
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESETERERLKKV------------- 157

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
              +      + G  + T    A                  K  +       +   + +E
Sbjct: 158 ---VNHYCDEHGGFIIRTAAEGADE----------------KELSQDAAFLKRLWLKVME 198

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
             +         G       I R                             + +   + 
Sbjct: 199 RRSKYKTRSTLYGELGLAQRILR-----------------------------DFVGTELD 229

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +      E     E       +  + L                   +  +E +++    
Sbjct: 230 KIMVDSRLEYENLKEFTSEYVPELTEKLELYEGDKPIFDMYDTENEIQRSLERKVE---- 285

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY+II+QTEA+ ++D+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 286 ----LKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   ++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMASDEHRKRVLSSLEAALSKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A N +V+    V   LL  +   + 
Sbjct: 402 CSSCPTCEGRGSVKTVETVCYEILREITRVNRAYDADNFVVYASPYVAETLLGDESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|262375075|ref|ZP_06068309.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145]
 gi|262310088|gb|EEY91217.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145]
          Length = 1159

 Score =  284 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 202/566 (35%), Positives = 309/566 (54%), Gaps = 9/566 (1%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYYKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKE+   L VP GM VI+RTAG  R++ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEMLATLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQSTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +EDTAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA
Sbjct: 310 QDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP-- 570
           +     + V    ++  +LLN+KR T+V  E    V + V+    L    + I   +   
Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHTLVYLEQTSNVRVTVLPHPHLETPHYEITYNAEGF 489

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                       S  +   Y+ +   + +++       + + +          +      
Sbjct: 490 APTSYERTEATRSSEKELGYESSEWHLEEEQHTHAAAPAPAQQQNNGRNNKRRNQQNQNA 549

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684
           ++    ++ PA     A   S  + ++N                  +      ++  GA 
Sbjct: 550 QQVPVAQQAPAQAQVAAPASSPCAWLENLFVQKQAATVDQSRTANNAAAAIEQMINGGAV 609

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSD 710
              +   +S P       + S  ++ 
Sbjct: 610 SRGQFGQLSAPVAQPAPQQVSQPAAP 635



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 51/78 (65%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++   R+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEIRVALVTGQRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   YY+
Sbjct: 62 AGRQGFLSMREIANSYYK 79


>gi|15640446|ref|NP_230073.1| ribonuclease G [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121727237|ref|ZP_01680396.1| cytoplasmic axial filament protein [Vibrio cholerae V52]
 gi|147674328|ref|YP_001218688.1| ribonuclease G [Vibrio cholerae O395]
 gi|153217100|ref|ZP_01950864.1| cytoplasmic axial filament protein [Vibrio cholerae 1587]
 gi|153818264|ref|ZP_01970931.1| cytoplasmic axial filament protein [Vibrio cholerae NCTC 8457]
 gi|153822588|ref|ZP_01975255.1| cytoplasmic axial filament protein [Vibrio cholerae B33]
 gi|153825647|ref|ZP_01978314.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-2]
 gi|227080630|ref|YP_002809181.1| cytoplasmic axial filament protein [Vibrio cholerae M66-2]
 gi|229507059|ref|ZP_04396565.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae BX 330286]
 gi|229508786|ref|ZP_04398278.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae B33]
 gi|229512650|ref|ZP_04402119.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae TMA 21]
 gi|229519774|ref|ZP_04409217.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae RC9]
 gi|229525113|ref|ZP_04414518.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae bv. albensis VL426]
 gi|229606300|ref|YP_002876948.1| ribonuclease G [Vibrio cholerae MJ-1236]
 gi|254850651|ref|ZP_05240001.1| ribonuclease G [Vibrio cholerae MO10]
 gi|255743804|ref|ZP_05417761.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholera CIRS 101]
 gi|262153583|ref|ZP_06028711.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae INDRE 91/1]
 gi|262167617|ref|ZP_06035321.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae RC27]
 gi|298501048|ref|ZP_07010849.1| cytoplasmic axial filament protein [Vibrio cholerae MAK 757]
 gi|9654841|gb|AAF93592.1| cytoplasmic axial filament protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630356|gb|EAX62751.1| cytoplasmic axial filament protein [Vibrio cholerae V52]
 gi|124113880|gb|EAY32700.1| cytoplasmic axial filament protein [Vibrio cholerae 1587]
 gi|126511223|gb|EAZ73817.1| cytoplasmic axial filament protein [Vibrio cholerae NCTC 8457]
 gi|126519892|gb|EAZ77115.1| cytoplasmic axial filament protein [Vibrio cholerae B33]
 gi|146316211|gb|ABQ20750.1| cytoplasmic axial filament protein [Vibrio cholerae O395]
 gi|149740677|gb|EDM54784.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-2]
 gi|227008518|gb|ACP04730.1| cytoplasmic axial filament protein [Vibrio cholerae M66-2]
 gi|227012273|gb|ACP08483.1| cytoplasmic axial filament protein [Vibrio cholerae O395]
 gi|229338694|gb|EEO03711.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae bv. albensis VL426]
 gi|229344463|gb|EEO09438.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae RC9]
 gi|229350327|gb|EEO15278.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae TMA 21]
 gi|229354189|gb|EEO19120.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae B33]
 gi|229355804|gb|EEO20724.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae BX 330286]
 gi|229368955|gb|ACQ59378.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae MJ-1236]
 gi|254846356|gb|EET24770.1| ribonuclease G [Vibrio cholerae MO10]
 gi|255738553|gb|EET93941.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholera CIRS 101]
 gi|262023953|gb|EEY42650.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae RC27]
 gi|262030610|gb|EEY49246.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae INDRE 91/1]
 gi|297540296|gb|EFH76356.1| cytoplasmic axial filament protein [Vibrio cholerae MAK 757]
          Length = 489

 Score =  284 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + ES   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++ K+              
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                +   Y         G  I R      + K L + A  L+
Sbjct: 157 ---------------------IVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +  R+   +R+ +  +      +                       + +   + 
Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +      E     E       +    L   +               +  +E +++    
Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   ++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+    V   L  ++   + 
Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|229520012|ref|ZP_04409441.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae TM 11079-80]
 gi|229530263|ref|ZP_04419651.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae 12129(1)]
 gi|229332036|gb|EEN97524.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae 12129(1)]
 gi|229342961|gb|EEO07950.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae TM 11079-80]
          Length = 489

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + ES   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++ K+              
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                +   Y         G  I R      + K L + A  L+
Sbjct: 157 ---------------------IVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +  R+   +R+ +  +      +                       + +   + 
Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +      E     E       +    L   +               +  +E +++    
Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   ++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLEAALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+    V   L  ++   + 
Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|295698594|ref|YP_003603249.1| ribonuclease E [Candidatus Riesia pediculicola USDA]
 gi|291157203|gb|ADD79648.1| ribonuclease E [Candidatus Riesia pediculicola USDA]
          Length = 606

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 173/422 (40%), Positives = 257/422 (60%), Gaps = 3/422 (0%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
                    K   +  I+E++K  Q +++QI KEERG+KGA++TT++SLAG Y VLMPN 
Sbjct: 74  SKEYFSNQFKANSKPNIKEILKEGQEIIIQINKEERGHKGASLTTFISLAGCYLVLMPNN 133

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            K   ISR+I      + +KEI   L VP GMG+I+RTAG  ++   +++D +Y +  W+
Sbjct: 134 PKAGGISRRIEGEDRAE-IKEILPFLNVPNGMGLIIRTAGLGKSVKVLQQDLQYRLNHWE 192

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SY 332
            +++ +L+  AP L+++E N+I R+IRD +  DI EII+         K+ ++ +    +
Sbjct: 193 AIKKASLSKNAPFLIHQESNIIIRSIRDYFQPDIQEIIIDEFDTIEMVKNHIESIGRKDF 252

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    PIF    IE Q++S  Q +V LPS G ++I+ TEAL +ID+NS RSTR 
Sbjct: 253 LNKIKHYSGKIPIFSHYQIESQIESAFQRKVRLPSGGSIVIDTTEALTAIDINSARSTRC 312

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TA  TNLEA EEI RQLRLRDL GLIV+DFIDM  + + R +E K++E++++DRA
Sbjct: 313 TDIEETAFNTNLEAVEEITRQLRLRDLGGLIVIDFIDMSIQSHQREIENKIREAVRQDRA 372

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +VQ   IS FGLLEMSRQR+ SS+ ES   VC  C G+G IR   S++LSILR +EE + 
Sbjct: 373 KVQCSRISRFGLLEMSRQRLTSSLCESNYYVCPRCDGSGTIRDDESLSLSILRIIEEEVF 432

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-ARFGVSINVVIGIELADKLFYIEKGSPV 571
           +   + +       +  Y+LN+KR  I + E  +  + I +V    +    F I +    
Sbjct: 433 KDNTYEVHAIVPIQIASYILNKKRNFINDIERKKSNIKIIIVPNNRIQSPQFNIIRIRKG 492

Query: 572 QA 573
           + 
Sbjct: 493 EK 494



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A   EE RV ++   R+ +L+ E+  +++ K NIY  KV R+EPSL AAFV+YG
Sbjct: 2   KRMLINAVQKEELRVAIVEGQRLYDLNIETIRREKKKSNIYKGKVIRIEPSLGAAFVNYG 61

Query: 63  GNRHGFLPFLEIHPDYY--QIPFSDRQALLKESNIAQTDSEAVADDV 107
             +HGFLP  EI  +Y+  Q   + +  + +     Q     +  + 
Sbjct: 62  SMKHGFLPIKEISKEYFSNQFKANSKPNIKEILKEGQEIIIQINKEE 108


>gi|253698796|ref|YP_003019985.1| ribonuclease, Rne/Rng family [Geobacter sp. M21]
 gi|251773646|gb|ACT16227.1| ribonuclease, Rne/Rng family [Geobacter sp. M21]
          Length = 496

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 144/565 (25%), Positives = 247/565 (43%), Gaps = 72/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N+++I+ +   ETR+ ++ +  + EL  E    K I GNIY  +V RV P +QAAFVD
Sbjct: 1   MGNELVINTT-SHETRIALIENGTIAELYVERSRVKGIIGNIYKGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++                          +A+ +  ++ +     +   
Sbjct: 60  IGLEKAAFLYVADV-------------------------FDAMDEYDSYIEGEQGEEPMP 94

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
             + PI    QE +E  +  +   + +       G+          ++ +     +   +
Sbjct: 95  HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 148

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +   +   +   G           G  I R +++    ++L      L 
Sbjct: 149 SRRIEDEAERERLKEIVDRIKPVG-----------GGFIVRTVSDGKSEEDLVADLHYLT 197

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I +    +     I  D +   +                            +R
Sbjct: 198 KLWDE--IAKKKDNAGAPTLIHSDLDVTQK---------------------------VVR 228

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  + +  I+V  +  + +   F+   MP     +  Y++  PIF   G+EV++     
Sbjct: 229 DILTESVERIVVDSKPEHDKIVQFITTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 288

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR+L 
Sbjct: 289 RKVWLKSGGYIIIEQTEALTAIDVNTGRYVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 348

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+E+LK D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 349 GIIIIDFIDMEKEVNREKVYGALEEALKSDKSKTNILKISELGLVEMTRKRVRESLGRMM 408

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+ SV   I R +   +L      +++  H  V   L +++R  + 
Sbjct: 409 CEPCPYCEGRGYVKSKISVCHEIFRELRREMLDIRGTKVMLTVHPQVADLLYDEERRGLE 468

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E  F   I V        + F +
Sbjct: 469 ELEKNFKKRITVRAKPGFHQEQFEV 493


>gi|91782561|ref|YP_557767.1| ribonuclease G [Burkholderia xenovorans LB400]
 gi|91686515|gb|ABE29715.1| RNAse G [Burkholderia xenovorans LB400]
          Length = 489

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 197/406 (48%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQHQAPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   L      G I+RT     T  E+  D  YL + W  +    
Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAGDVAYLRKTWATILSQG 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++ NL +R +RD    + S I V   + Y+   DF     P+ +  +  Y
Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++   V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|187923291|ref|YP_001894933.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN]
 gi|187714485|gb|ACD15709.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN]
          Length = 489

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 197/406 (48%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQHQTPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   L      G I+RT     T  E+  D  YL + W  +    
Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAGDVAYLRKTWATILSQG 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++ NL +R +RD    + S I V   + Y+   DF     P+ +  +  Y
Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDESSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++   V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|186476825|ref|YP_001858295.1| ribonuclease [Burkholderia phymatum STM815]
 gi|184193284|gb|ACC71249.1| ribonuclease, Rne/Rng family [Burkholderia phymatum STM815]
          Length = 489

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 200/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P++      I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQQQVPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   L V    G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTSVLPVDEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++ NL +R +RD    + + I V   + ++   +F     P+ +  +  Y
Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETTRIQVDSRETFQMLTEFAAEFTPAVSSKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++   V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENSEHRDQVLGELKKALARDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTARTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|30678104|ref|NP_850988.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana]
 gi|330250722|gb|AEC05816.1| RNAse E/G-like protein [Arabidopsis thaliana]
          Length = 871

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 206 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 265

Query: 65  RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112
           RH F+   +I  +   +   PF D            L      A  + E  + D     +
Sbjct: 266 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 322

Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145
              + +   E                                     +E   I       
Sbjct: 323 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 382

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             +++     +        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L  R
Sbjct: 383 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 440

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D 
Sbjct: 441 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 497

Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + L+  W N+ + A ++            P L++         ++D +   + +++V   
Sbjct: 498 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 557

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++I Q
Sbjct: 558 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 617

Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEALVSIDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++
Sbjct: 618 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 677

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G +
Sbjct: 678 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 737

Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543
            +  +    I + +   L +                I+   S +  +L   KR  +    
Sbjct: 738 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 797

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           +   V I + +        F ++     + +    H+V       +         +   L
Sbjct: 798 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 857

Query: 604 LPIPKSES 611
           +PI K ++
Sbjct: 858 IPIKKEKT 865


>gi|254226003|ref|ZP_04919603.1| cytoplasmic axial filament protein [Vibrio cholerae V51]
 gi|125621459|gb|EAZ49793.1| cytoplasmic axial filament protein [Vibrio cholerae V51]
          Length = 489

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + ES   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++ K+              
Sbjct: 111 PLGTKGARXTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                +   Y         G  I R      + K L + A  L+
Sbjct: 157 ---------------------IVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +  R+   +R+ +  +      +                       + +   + 
Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +      E     E       +    L   +               +  +E +++    
Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   ++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+    V   L  ++   + 
Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|160872700|ref|ZP_02062832.1| ribonuclease E (RNase E) [Rickettsiella grylli]
 gi|159121499|gb|EDP46837.1| ribonuclease E (RNase E) [Rickettsiella grylli]
          Length = 778

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 191/620 (30%), Positives = 308/620 (49%), Gaps = 21/620 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R ALL+ + ++  D E    +    ++       +E+    A  S   E       
Sbjct: 15  PGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYGAE------- 67

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                      K  +P  +  K      I+  +K  Q L+VQI KEERG+KGAA+TTY++
Sbjct: 68  ----RHGFLPFKEIAPSYLKGKNYDLQSIKHSLKVGQELMVQIEKEERGDKGAALTTYIT 123

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKN---LKEIARGLEVPAGMGVILRTAGASRTK 258
           L G Y VLMPN      ISR+I     R+    + ++    E+   MG+ILRTAG  R  
Sbjct: 124 LPGSYLVLMPNNPGAGGISRRIEGDERREMQDLMHDLIEQTELSKNMGLILRTAGVGREF 183

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
            E+K D   L++ W+ +++      AP L+++EG+LI R++RD   +DI EIIV  +K +
Sbjct: 184 SELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVDDKKIH 243

Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378
            + K +++ + P +   +  Y++  P+F    IE  ++S  + ++ LPS   ++I++TEA
Sbjct: 244 EKIKQYIEQIRPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVIDRTEA 303

Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
           LVSID+NSGRST+   IE+TA+ TNLEAA+EIA QLR+RDL GLIV+DFIDM  ++N R 
Sbjct: 304 LVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSEENQRK 363

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           VE   + ++KKDRAR+Q+G IS FGLLEMSRQR+R S+ ++   +C+ C G G +R+  S
Sbjct: 364 VENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTVRTIES 423

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
            AL +LRS+E+  L+ +  +I V    D+  YL N+KR  +   E ++ V++ ++     
Sbjct: 424 FALFLLRSIEKETLKKSTQHIRVELPVDIATYLFNEKRLALQHIEHQYNVNLLLIPNPYW 483

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES------- 611
               + I   S    L                + ++        ++ IP  +        
Sbjct: 484 QSPQYKITSFSKTNNLKTNDAASYQMLDKSHLESSLLHHSPSAKVVEIPAVKPLTFINNK 543

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            + +              K +    +++P+ +        +     +    S   +    
Sbjct: 544 NKTVGLLGRLLGMLKDFGKIKTDLNKKQPSKNKITTPYSHEAHKYTSGRRYSKTRHNHNR 603

Query: 672 DITNHNLLENGAHGFTENYD 691
                +  E   +    N  
Sbjct: 604 VRHRRDEKEKLNNDSGGNEQ 623



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 62/105 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           N++LI+A+   E RV +L  N++ +LD E   ++Q K NIY  K++R+E SL+AAF+ YG
Sbjct: 6   NRILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYG 65

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLPF EI P Y +    D Q++     + Q     +  + 
Sbjct: 66  AERHGFLPFKEIAPSYLKGKNYDLQSIKHSLKVGQELMVQIEKEE 110


>gi|220928744|ref|YP_002505653.1| ribonuclease, Rne/Rng family [Clostridium cellulolyticum H10]
 gi|219999072|gb|ACL75673.1| ribonuclease, Rne/Rng family [Clostridium cellulolyticum H10]
          Length = 494

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 133/571 (23%), Positives = 238/571 (41%), Gaps = 77/571 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N++++D S   E RV +L D  + E+  E  + + + GNIY  KV+ V P +QAAF+D
Sbjct: 1   MVNEIIVDVS-PGEIRVGILEDKELAEIHIERTNHQGLVGNIYRGKVSSVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++ FL   +  P                      D   V  +    +++       
Sbjct: 60  IGYEKNAFLYVGDAVP----------------KKEYSDDESEVNCNYEEYNISDILKVGQ 103

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E    +      T+   + +                          +  +     +   +
Sbjct: 104 EITVQVIKEPIGTKGPRVST--------------------HITLPGRNLVLLPNADYIGI 143

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +    K         L      L P       I R ++   +  +  E    L 
Sbjct: 144 SRRIENDAERQK---------LKKIAEKLKPQ--NMGLIVRTVSEGKEESDFVEDVSFLI 192

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I  +         I RD                             LI R++R
Sbjct: 193 KLWAK--IKESENNGPVPRCIHRDIN---------------------------LIYRSVR 223

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+  D+++ I++ EK Y +  + ++++ P     V  ++  + IF    IE +++    
Sbjct: 224 DLFTWDVNKFIINSEKEYSKVLELVEMISPLLKSRVELFQKDYKIFDYYQIESKIERALS 283

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L   GY+II++TEAL  IDVN+G+   E  +E+T L+TN+EA  EIA+QLRLRD+ 
Sbjct: 284 RKVWLKCGGYIIIDKTEALTVIDVNTGKFVGESNLEETVLKTNIEATREIAKQLRLRDIG 343

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G++++DFIDM   ++ + V   LK+SLK DR +  V  ++  GL+EM+R++IR  +    
Sbjct: 344 GIVIIDFIDMNNAEHQQLVLDSLKQSLKDDRTKTIVLGMTELGLVEMTRKKIRQELSTVI 403

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           +  C  C GAG + +  + A++ILR V E++   ++  I +  H  V   +    ++ + 
Sbjct: 404 SCDCPICDGAGRVYTAETNAMNILREVREHMNSTSSKKIRLEVHPTVAHAVEENIQSLLE 463

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           ++  +    I V    ++    + I+     
Sbjct: 464 DFTEKKDKKIKVTAVNDIRPAGYRIKDIDTD 494


>gi|297580557|ref|ZP_06942483.1| cytoplasmic axial filament protein [Vibrio cholerae RC385]
 gi|297534973|gb|EFH73808.1| cytoplasmic axial filament protein [Vibrio cholerae RC385]
          Length = 489

 Score =  283 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 214/565 (37%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + ES   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++ K+              
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                      V       G  I R      + K L + A  L+
Sbjct: 157 --------------------------IVAHYCDEHGGFIIRTAAEGANEKELTQDAAFLK 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +  R+   +R+ +  +      +                       + +   + 
Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +      E     E       +    L   +               +  +E +++    
Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   ++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMVSDEHRKRVLISLEAALVKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+    V   L  ++   + 
Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|170691725|ref|ZP_02882889.1| ribonuclease, Rne/Rng family [Burkholderia graminis C4D1M]
 gi|170143009|gb|EDT11173.1| ribonuclease, Rne/Rng family [Burkholderia graminis C4D1M]
          Length = 489

 Score =  283 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 196/406 (48%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQHQTPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   L      G I+RT     T  E+  D  YL + W  +    
Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQG 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++ NL +R +RD    + S I V   + Y+   DF     P+ +  +  Y
Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++   V  +LK +L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLSELKRALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|288928444|ref|ZP_06422291.1| ribonuclease G [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331278|gb|EFC69862.1| ribonuclease G [Prevotella sp. oral taxon 317 str. F0108]
          Length = 524

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 149/566 (26%), Positives = 251/566 (44%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D ++ E   E        GN+Y+AKV ++ P L A FVD
Sbjct: 1   MTSEVVIDV-QQKEISIALLEDKKLVEYQSEPREVSFSVGNVYMAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                 GF                                    D   H         S 
Sbjct: 60  V-----GF----------------------------------ERDAFLHYLDLGSQFDSY 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +        ++       ++    +                   +   +Q  + + Q +
Sbjct: 81  AKYLKQVQSDRKKLYPFAKASRLPDLK------------------KDGSVQTTLTSGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +T  LS AGRY +L+P   K    S+  +     + LK++   ++
Sbjct: 123 LVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVSVSSKIKSGEERAR-LKQLIHSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAI 299
                GVI+RT    +   E+  + + L + W+   E        P LV+EE +     +
Sbjct: 182 PK-NCGVIVRTVAEGKRVAELDAELKTLTKYWEEAIEKVQKTQKRPQLVFEETSRAVALL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  ++E K ++ ++ P    IV+ Y    PIF    I  Q+ S  
Sbjct: 241 RDLFNPTYENIYVNDEDVFKEVKHYVSMIAPDKVDIVKLYSGKVPIFDNFNITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRD 418
              V      Y+II  TEAL  +DVNSG  TR E   E  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKAVNYKHGAYLIIEHTEALHVVDVNSGNRTRSEKGQEANALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           S  + C  C G G I+S       +   ++  + +       +H H  V  ++     + 
Sbjct: 421 SVDETCPTCFGKGKIKSSILFTDQLEGKIDRLVNKIGVKKFYLHVHPYVAAFINQGFISL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             +++ ++G  +++V   +LA   + 
Sbjct: 481 KRQWQLKYGFGLHIVSSQKLAFLQYE 506


>gi|254490565|ref|ZP_05103751.1| ribonuclease, Rne/Rng family [Methylophaga thiooxidans DMS010]
 gi|224464309|gb|EEF80572.1| ribonuclease, Rne/Rng family [Methylophaga thiooxydans DMS010]
          Length = 490

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 128/565 (22%), Positives = 219/565 (38%), Gaps = 78/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M++++LI+ +   ETR  V+ +  ++E+  E    + + GNIY  KV RV P +QAAFV+
Sbjct: 1   MSSEILINVT-PSETRAAVVDNGVLQEVFIERNEYRGLVGNIYKGKVCRVLPGMQAAFVE 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +I      IP      L +  N+  T S  + +               
Sbjct: 60  IGLARAAFLHVSDIS-----IPKGQTGDLKEAPNVEPTISSLLREGQEIL---------- 104

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                    V        G+          +Y +         +
Sbjct: 105 -----------------------VQVIKDPMGTKGARLTTQLSVSSRYLVYMPETEGIGV 141

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            ++I  EE  ++  +    L  AG    ++   ++G T +    +      L    +   
Sbjct: 142 SLKIETEEERDRLKSALVSLLEAGTGGYILRTAAEGVTEAELEADLKFLYRLWAKLQERN 201

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G              +  D    MR   ++    +                  IR
Sbjct: 202 QVVKCG------------EPLHEDLPLAMRALRDLFSADIER----------------IR 233

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                   + +   E    E    ++              +         I+  L+    
Sbjct: 234 IDAEDTFEKAVHFAEGFMPECAARLEHYTGDLPLFDLFGVEDE-------IQKALER--- 283

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+I +QTEA+ +ID+N+G       +E+T  +TNLEAA  IARQLR+R+L 
Sbjct: 284 -KVPLKSGGYLIFDQTEAMTTIDINTGGFVGHKNLEETIFKTNLEAAHAIARQLRVRNLG 342

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDMEE  +   V + L++++  DRAR  + A+S  GL+EM+R+R R S+    
Sbjct: 343 GIIIIDFIDMEEIGHREQVLRALEKAMVFDRARHNISAVSELGLVEMTRKRTRESLGHIL 402

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C+G GY ++  +V   I R +     QY     ++    D++  L ++    + 
Sbjct: 403 CEPCPCCEGKGYTKNVETVCYEIFREIMREAKQYETKQFLILASQDIIDRLNDEDSTKVA 462

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  I     ++   + F +
Sbjct: 463 ELEQMIGKPILFQCEMQYGREQFNV 487


>gi|319760541|ref|YP_004124479.1| ribonuclease E [Candidatus Blochmannia vafer str. BVAF]
 gi|318039255|gb|ADV33805.1| ribonuclease E [Candidatus Blochmannia vafer str. BVAF]
          Length = 716

 Score =  283 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 174/421 (41%), Positives = 253/421 (60%), Gaps = 3/421 (0%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
           + +  I+++++  Q L+VQI KEERGNKGAA+TT++SLAG Y VLMPN  K   ISR+I 
Sbjct: 85  QNKSNIKDILREGQELIVQINKEERGNKGAALTTFISLAGSYLVLMPNNPKSGGISRRIE 144

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
                + LK     L +P GM +I+RTAG  ++  E++ D    ++ W N++  A   +A
Sbjct: 145 GNDRIE-LKTTLATLALPEGMSLIIRTAGVGKSVAELEWDLTSRLQHWKNIKNTASIRLA 203

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPH 343
           P L++++ N+I RA RD    DI EI++        AK+ +  L  P + + ++ Y    
Sbjct: 204 PFLIHQDSNVIVRAFRDYLRPDIGEILIDNPDILNVAKEHITSLGRPDFVKKIKLYNGEI 263

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST+   IEDTA  TN
Sbjct: 264 PLFSHYQIESQIESAFQHEVRLPSGGSIVIDATEALTAIDINSARSTKGLDIEDTAFNTN 323

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEA +EIARQLRLRD+ GL+V+DFIDM    + R +E  L+  +++DRAR+QVG IS FG
Sbjct: 324 LEATDEIARQLRLRDIGGLVVIDFIDMTSNSHQREIENTLRTVVRQDRARIQVGRISKFG 383

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           LLE+SRQR+R S+ ES+  VC  C G G IR  +S++LSILR +EE  L+     +    
Sbjct: 384 LLELSRQRLRPSLDESSHHVCPRCSGTGSIRDNASLSLSILRLIEEEALKDNTCEVHAIV 443

Query: 524 HSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
              +  YLLN+KR  I + E R  GV   +V   ++    + + +    +   N      
Sbjct: 444 PVAIASYLLNEKRKAISDIEQRQKGVRAIIVPHEQMKTPNYEVRRIRKGETNNNQPSYAL 503

Query: 583 S 583
           +
Sbjct: 504 A 504



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 50/77 (64%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E     Q K NIY  K+ R+EPSL+A FVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLYDLDIEIIGHAQKKSNIYKGKIIRIEPSLEAVFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPIKEIAREYF 78


>gi|154490933|ref|ZP_02030874.1| hypothetical protein PARMER_00850 [Parabacteroides merdae ATCC
           43184]
 gi|154088681|gb|EDN87725.1| hypothetical protein PARMER_00850 [Parabacteroides merdae ATCC
           43184]
          Length = 526

 Score =  283 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 134/583 (22%), Positives = 242/583 (41%), Gaps = 58/583 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + VL D  + EL  E+ +     G+IYL KV ++ P L AAF+D
Sbjct: 1   MISELVVDV-QPKEVSIAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P++       +QAL ++                 GD  IP    +
Sbjct: 60  VGYKKDAFLHYLDLGPNFNTQQKFLKQALGEQK----------------GDKKIPTISKM 103

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           + +  I      +    +       ++       G        F  +Y +     ++  +
Sbjct: 104 QLLPEIEKDGSISNVLKVGQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSV 163

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I   E   +   +   +                  I R  +       L    + L 
Sbjct: 164 STKIKSSEERARLRQLIQSIKPKNFSV-----------IVRTSSEGKRVAELDHELKTL- 211

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                       ++ W+          AP L+YEE       +R
Sbjct: 212 ----------------------------LKRWEENIPKITKVKAPALIYEETARAVALLR 243

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++      I V+    Y   +D++ L+ P    IV++Y    PIF    I  Q+ SL  
Sbjct: 244 DIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFDNFAITKQIKSLFG 303

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419
             VT  S  Y+II  TEA+  IDVNSG  ++    ++ TA+  N  AA+EIARQLRLRD+
Sbjct: 304 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNTAAADEIARQLRLRDM 363

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM E  N + + + + +++  DRA+  +  +S FGL++++RQR+R ++   
Sbjct: 364 GGIIVVDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDVD 423

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T++ C  C G G I+       S+   ++  + ++      +H H  V  ++ + K    
Sbjct: 424 TSEACPTCFGTGTIKPSILFTDSLEGKIDCLVNKHNVKKFALHVHPYVAAFIKSGKFPLS 483

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
            +++ ++ + I V+    L    +        +  +    ++ 
Sbjct: 484 WKWKLKYSMGIKVIPNQSLGFLEYKFIDSDKNELDMMEEKEIK 526


>gi|157963562|ref|YP_001503596.1| ribonuclease G [Shewanella pealeana ATCC 700345]
 gi|157848562|gb|ABV89061.1| ribonuclease, Rne/Rng family [Shewanella pealeana ATCC 700345]
          Length = 502

 Score =  283 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 122/562 (21%), Positives = 212/562 (37%), Gaps = 80/562 (14%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++LI+ +   E RV ++    ++E+  E   K+ + GNIY  KV+RV P +QAAFVD G 
Sbjct: 18  ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 76

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           ++  FL   +I P  +    +D +               +A+ V  G   +         
Sbjct: 77  DKAAFLHASDIVP--HTECVADVEK-------GNFVVRDIAELVRQGQDIMVQVVKDPLG 127

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
              A  + +    S         S+V   +    E+V  + K+                 
Sbjct: 128 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEVRARLKK----------------I 171

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
                  + G  + T    AG   ++     +     R++   V  +  +     L    
Sbjct: 172 TQPFVDDDGGFIIRTAAESAGEDELV-----QDAGFLRRVWAKVSERRKRRGVSLLYQDL 226

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            + V +          +I+ D            +  +  +A  L +  G +    + D  
Sbjct: 227 ALPVRIVRDFVGTELDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYD-- 284

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
                                                          +E ++      +V
Sbjct: 285 -----------------------------------------------VENEVQRALGRKV 297

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY+II+QTEA+ ++D+N+G       + +T   TNLEA   IARQLRLR+L G+I
Sbjct: 298 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGII 357

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           ++DFIDM   ++ + V   L+ +L KDR +  +   S  GL+EM+R+R R S+       
Sbjct: 358 IIDFIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 417

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G +++  +V+  I R +      Y A   +V+   +V   L   +   + E E
Sbjct: 418 CPACLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELE 477

Query: 544 ARFGVSINVVIGIELADKLFYI 565
              G  + +      A   F +
Sbjct: 478 VYIGKRVRLQSEPMYAQNKFDV 499


>gi|187735048|ref|YP_001877160.1| ribonuclease, Rne/Rng family [Akkermansia muciniphila ATCC BAA-835]
 gi|187425100|gb|ACD04379.1| ribonuclease, Rne/Rng family [Akkermansia muciniphila ATCC BAA-835]
          Length = 515

 Score =  283 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 143/572 (25%), Positives = 240/572 (41%), Gaps = 70/572 (12%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ++I+A    E RV +L +  +EE   E E +  I G I+  +V  +EP L+A FVD G  
Sbjct: 6   IIINA-EKLERRVALLENGVLEEYTIEREGEDNIVGGIFKGRVKNIEPGLKAMFVDIGQE 64

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           ++ FL F +       +P +   +L +     +   +     +T  D+        E + 
Sbjct: 65  KNAFLHFWD------ALPAALDSSLEEIEREGR--PKKQQRKITSKDIPDIYPIGSEIMV 116

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
            +      T+   + +       NV                      E  K R  L   +
Sbjct: 117 QVTKGPIGTKGPRVTT-------NVSLAGRYLVLMPFTDQFGISRKIEDPKERLRLRQIM 169

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
            K    +                           I R +      ++       L     
Sbjct: 170 QKLNVPDGM-----------------------GIIMRTVAQGQRYRHFVRDLAMLLEQW- 205

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304
                                        +V E    + AP  VY+E +LI+R  RD   
Sbjct: 206 ----------------------------YSVEEKKEANPAPVCVYKEPDLIERTARDFLT 237

Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVT 364
             +  II    +     +     +     R ++ +    PIF   GIE Q++   Q +V 
Sbjct: 238 DTVDNIICDNAETTEHMRAIAGKISRRAKRHIQHFPVRTPIFEELGIEKQINEAFQRQVL 297

Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424
           LP  GY++I++TEAL++IDVN+GR+     ++ T L TNLEAA EIARQLRLR++ GL+V
Sbjct: 298 LPCGGYLVIDETEALIAIDVNTGRNKGTKDLDKTILDTNLEAAYEIARQLRLRNIGGLVV 357

Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
           VDFIDM  +K+ ++V K +K+ LK+D+A+ QV  I+  GL+EM+RQR+  S+ ES    C
Sbjct: 358 VDFIDMRHRKDQQAVYKAMKDRLKRDKAKTQVLQITPIGLMEMTRQRLNESLRESVHDPC 417

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYT--AHNIIVHTHSDVVLYLLNQKRATIVEY 542
            YC G G ++S  ++++ I R +   + +Y     ++++  +S+V+    N+  + ++E 
Sbjct: 418 PYCGGRGRVKSVMTMSVEIQRQIYACIQKYRDTIGDMVIVVNSEVLSRFKNEDASLLMEL 477

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           E +    +          + F I         
Sbjct: 478 ERQHSGRLIFRGDHNQHRESFAIYDARYDNKP 509


>gi|27368501|emb|CAD48421.1| putative endoribonuclease E [Arabidopsis thaliana]
          Length = 818

 Score =  283 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 153 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 212

Query: 65  RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112
           RH F+   +I  +   +   PF D            L      A  + E  + D     +
Sbjct: 213 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 269

Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145
              + +   E                                     +E   I       
Sbjct: 270 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 329

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             +++     +        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L  R
Sbjct: 330 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 387

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D 
Sbjct: 388 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 444

Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + L+  W N+ + A ++            P L++         ++D +   + +++V   
Sbjct: 445 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 504

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++I Q
Sbjct: 505 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 564

Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEALVSIDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++
Sbjct: 565 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 624

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G +
Sbjct: 625 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 684

Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543
            +  +    I + +   L +                I+   S +  +L   KR  +    
Sbjct: 685 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 744

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           +   V I + +        F ++     + +    H+V       +         +   L
Sbjct: 745 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 804

Query: 604 LPIPKSES 611
           +PI K ++
Sbjct: 805 IPIKKEKT 812


>gi|22325461|ref|NP_178508.2| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana]
 gi|20260628|gb|AAM13212.1| putative ribonuclease E [Arabidopsis thaliana]
 gi|31711752|gb|AAP68232.1| At2g04270 [Arabidopsis thaliana]
 gi|330250720|gb|AEC05814.1| RNAse E/G-like protein [Arabidopsis thaliana]
          Length = 713

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 48  ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 107

Query: 65  RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112
           RH F+   +I  +   +   PF D            L      A  + E  + D     +
Sbjct: 108 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 164

Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145
              + +   E                                     +E   I       
Sbjct: 165 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 224

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             +++     +        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L  R
Sbjct: 225 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 282

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D 
Sbjct: 283 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 339

Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + L+  W N+ + A ++            P L++         ++D +   + +++V   
Sbjct: 340 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 399

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++I Q
Sbjct: 400 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 459

Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEALVSIDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++
Sbjct: 460 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 519

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G +
Sbjct: 520 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 579

Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543
            +  +    I + +   L +                I+   S +  +L   KR  +    
Sbjct: 580 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 639

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           +   V I + +        F ++     + +    H+V       +         +   L
Sbjct: 640 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 699

Query: 604 LPIPKSES 611
           +PI K ++
Sbjct: 700 IPIKKEKT 707


>gi|262370011|ref|ZP_06063338.1| ribonuclease E [Acinetobacter johnsonii SH046]
 gi|262315050|gb|EEY96090.1| ribonuclease E [Acinetobacter johnsonii SH046]
          Length = 1156

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 201/548 (36%), Positives = 301/548 (54%), Gaps = 1/548 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +        ++   I+E+I     LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN
Sbjct: 71  REIANSYYQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG  ISR+I+  V  + LKE+   L VP GM VI+RTAG  R++ E++ D ++L+ LW
Sbjct: 131 NPKGGGISRQISGSVREE-LKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             ++  A +  +P LV++E  ++ RAIRD    D++EI++  E+ Y EA +F+K +MP  
Sbjct: 190 AQIQNTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ Y    P+F   GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR 
Sbjct: 250 IDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +EDTAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA
Sbjct: 310 SDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+Q G +S FGL+EMSRQR+R S+ E+T  VC  C G G +R   S++LSI+R VEE  L
Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +     + V    ++  +LLN+KR T+V  E   GV + V+    L    + I       
Sbjct: 430 RERHGEVQVQVPVEIAAFLLNEKRHTLVYLEQTSGVRVTVLPHPHLETPHYEISYNPEGF 489

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A  +      + S              D A      +      Q+    +      +++ 
Sbjct: 490 APTSYERTEATRSSEKELGYESSEWHLDGADHVHQHAAPAPVQQEKGNKKPRNNAPQQQV 549

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
            ++   + A        + ++   +             +      ++  GA    +   V
Sbjct: 550 AQQAPAQTAPSSSPCAWLENLFVQKQAATVDQSRSANNAAAAIEQMVNGGAVSRGQFGQV 609

Query: 693 SIPPVSTP 700
             P  +  
Sbjct: 610 GTPAAAPI 617



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 51/78 (65%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++   R+ + D E+  ++Q K NIY   VTRVEPSL+A FV+YG
Sbjct: 2  KRMLINATHAEEIRVALVTGQRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R GFL   EI   YYQ
Sbjct: 62 AGRQGFLSMREIANSYYQ 79


>gi|299066203|emb|CBJ37387.1| ribonuclease G (RNase G) [Ralstonia solanacearum CMR15]
          Length = 489

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 129/567 (22%), Positives = 218/567 (38%), Gaps = 83/567 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1   MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   +I HP                                  D       +
Sbjct: 60  IGLERAAFLHVADIWHP------------------------------REAKDAPAAPHVA 89

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
           +E+             +  I      +S    + G +   +P    +   I    K    
Sbjct: 90  IEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLP----QDSHIGISQKIGN- 144

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
              +  +E    +              + ++P   +G  I R I      + L      L
Sbjct: 145 ---ETDREALRQRV-------------TRMVPTDERGGFIVRTIAEEASDEELANDVAYL 188

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                   I   A        + +D     R+                     + +    
Sbjct: 189 RKIW--ATIRHNATTLPAPSILYQDLNLAQRVLR-------------------DFVTDDT 227

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           R +            E         ++         +  Y    PIF    IE +++   
Sbjct: 228 RSIQIDSRENYQKLIEFAQEYTPAVVE--------RLTHYTGERPIFDLYNIEAEVERAL 279

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L
Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDME  ++  +V  +L+ +L +DR R+ V + S  GL+EM+R+R R S+   
Sbjct: 340 GGIIIIDFIDMESGEHRDAVLAELRRALARDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C+G G +++  +V   ILR +     Q+      +     V+   L ++   +
Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459

Query: 540 VEYEARFGVSINVVIGI-ELADKLFYI 565
                  G  I++ +     + + + I
Sbjct: 460 AMLGDFIGKPISLQVESAAASQEQYDI 486


>gi|307730390|ref|YP_003907614.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
 gi|307584925|gb|ADN58323.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
          Length = 489

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 196/406 (48%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQHQSPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   L      G I+RT     T  E+  D  YL + W  +    
Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQG 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++ NL +R +RD    + S I V   + Y+   DF     P+ +  +  Y
Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSAKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++   V  +LK +L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLSELKRALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|253699355|ref|YP_003020544.1| ribonuclease, Rne/Rng family [Geobacter sp. M21]
 gi|251774205|gb|ACT16786.1| ribonuclease, Rne/Rng family [Geobacter sp. M21]
          Length = 919

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 189/530 (35%), Positives = 288/530 (54%), Gaps = 8/530 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++  +   D E   ++   G++       +E+    A      ++   +  
Sbjct: 8   PEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLKKLGFLQM 67

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                 N         +    +  R+  IQEV++  Q L+VQ+ K ER NKG+A+TTY+S
Sbjct: 68  GELHPENW----KWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTTYVS 123

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP  S    ISRK+    +RK LKEI   + +P G G I+RT    RT+ E+
Sbjct: 124 LPGRYMVLMPG-SDSAGISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTRDEL 182

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D + L+  +  +R   L      ++Y+E  LI R IRD +  DI E++V  +  Y + 
Sbjct: 183 QKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVYNDV 242

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           +D +K + P++ ++V+ +++  PIF R  +E Q+D +++ +V L S G + I  TEALVS
Sbjct: 243 RDCLKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVS 302

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+ST E  +EDTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N  VEK
Sbjct: 303 IDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNAEVEK 362

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK +LK D+ARV V  IS FGLLEMSRQRIR ++ +++T  C +C G G ++S  ++AL
Sbjct: 363 TLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAMAL 422

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S LR V     + T   ++     +V  YLLN+KR  + + E+ + + + V         
Sbjct: 423 SFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTVKGKPSYLLN 482

Query: 562 LFY---IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
                 I++  P   L+      G         +      + +       
Sbjct: 483 QMDLELIKREKPADELLLEKPAHGRSLPKEEAAQEPAAEGRKKKKKGKKP 532


>gi|323525385|ref|YP_004227538.1| Rne/Rng family ribonuclease [Burkholderia sp. CCGE1001]
 gi|323382387|gb|ADX54478.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1001]
          Length = 489

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 196/406 (48%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQHQSPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   L      G I+RT     T  E+  D  YL + W  +    
Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQG 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++ NL +R +RD    + S I V   + Y+   DF     P+ +  +  Y
Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSAKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++   V  +LK +L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKRALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|241663587|ref|YP_002981947.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D]
 gi|240865614|gb|ACS63275.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D]
          Length = 489

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 220/567 (38%), Gaps = 83/567 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1   MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   +I HP                                  D       +
Sbjct: 60  IGLERAAFLHVADIWHP------------------------------RDAKDAPPTPQVA 89

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
           +E+             +  I      +S    + G +   +P    +   I    K    
Sbjct: 90  IEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLP----QDPHIGISQKIGNE 145

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
                   ER    A VT           ++P   +G  I R I      + L      L
Sbjct: 146 A-------EREALRARVT----------AMVPTEERGGFIVRTIAEESTDEELANDVAYL 188

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                   I   A        + +D     R+  +       S            I+   
Sbjct: 189 RKIW--ATIRHNATTLPAPSILYQDLNLAQRVLRDFVTDETRS------------IQVDS 234

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           R+ + K I                +                   PIF    IE +++   
Sbjct: 235 RENHQKLIEFAQEYTPAVVERLTHYTGE---------------RPIFDLYNIEAEVERAL 279

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L
Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDME  ++  +V  +L+++L +DR R+ V + S  GL+EM+R+R R S+   
Sbjct: 340 GGIIIIDFIDMESAEHRDAVLAELRKALSRDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C+G G +++  +V   ILR +     Q+      +     V+   L ++   +
Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459

Query: 540 VEYEARFGVSINVVIGIE-LADKLFYI 565
                  G  I++ +     + + + I
Sbjct: 460 AMLGDFIGKPISLQVESSAASQEQYDI 486


>gi|222054340|ref|YP_002536702.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32]
 gi|221563629|gb|ACM19601.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32]
          Length = 503

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 140/565 (24%), Positives = 247/565 (43%), Gaps = 65/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N+++I+ +   ETR+ ++ +  + EL  E    K I GNIY  +V RV P +QAAFVD
Sbjct: 1   MGNELVINTT-SHETRIALIENGTIAELYIERSRVKGIVGNIYKGRVIRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++                   +  +     +  +    +     +  L
Sbjct: 60  IGLEKAAFLYVADV------------------FDAMEEYDGFMDGNGKKEEPVEGEEPVL 101

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
             + PI    QE +E  +  +   + +       G+          ++ +     +   +
Sbjct: 102 HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 155

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +   +   +  AG           G  I R ++     ++L      L 
Sbjct: 156 SRRIEDEAERERLKEIIDRIKPAG-----------GGFIVRTVSEGKSEEDLISDLNYLT 204

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  +++    +   + I  D +   ++  ++   ++  +                 
Sbjct: 205 KLWDE--VVKRKEKASAPLLIHSDLDVTQKVVRDILTESVERI----------------- 245

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                     +V  +  + +   F+   MP     +  Y++  PIF   G+EV++     
Sbjct: 246 ----------VVDSKPEHDKIVQFISTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 295

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR+L 
Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 355

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME + N   V   L+E+++ D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 356 GIIIIDFIDMEREVNREKVFTALEEAVRGDKSKTNILKISELGLVEMTRKRVRESIGRMM 415

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+++V   I R +   +L      I++  H  V   L +++R  + 
Sbjct: 416 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKIMLTVHPQVADLLYDEERRGLE 475

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E  F   I V        + F I
Sbjct: 476 ELEKNFKKRITVRAKPGFHQEQFEI 500


>gi|300690885|ref|YP_003751880.1| ribonuclease G (RNase G) [Ralstonia solanacearum PSI07]
 gi|299077945|emb|CBJ50585.1| ribonuclease G (RNase G) [Ralstonia solanacearum PSI07]
          Length = 489

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 131/567 (23%), Positives = 219/567 (38%), Gaps = 83/567 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1   MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61  YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   +I HP                                  D       +
Sbjct: 60  IGLERAAFLHVADIWHP------------------------------RDAKDAPPTPHVA 89

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
           +E+             +  I      +S    + G +   +P    +   I    K    
Sbjct: 90  IEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLP----QDPHIGISQKIGN- 144

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
              +  +E    +              + ++P   +G  I R I      + L      L
Sbjct: 145 ---ETDREALRQRV-------------TSMVPADERGGFIVRTIAEEATDEELANDVAYL 188

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                   I   A        + +D     R+  +       S            I+   
Sbjct: 189 RKIW--ATIRHNATTLPAPSILYQDLNLAQRVLRDFVTDDTRS------------IQVDS 234

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           R+ Y K +                +                   PIF    IE +++   
Sbjct: 235 RENYQKLVEFAQEYTPAVVERLTHYTGE---------------RPIFDLYNIEAEVERAL 279

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  IARQLRLR+L
Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDME  ++  +V  +L+ +L +DR R+ V + S  GL+EM+R+R R S+   
Sbjct: 340 GGIIIIDFIDMESAEHRDAVLAELRRALARDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C+G G +++  +V   ILR +     Q+      +     V+   L ++   +
Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459

Query: 540 VEYEARFGVSINVVIGI-ELADKLFYI 565
                  G  I++ +     + + + I
Sbjct: 460 AMLGDFIGKPISLQVESAAASQEQYDI 486


>gi|15616953|ref|NP_240166.1| ribonuclease E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11387055|sp|P57429|RNE_BUCAI RecName: Full=Ribonuclease E; Short=RNase E
 gi|25403604|pir||D84970 ribonuclease E [imported] - Buchnera sp. (strain APS)
 gi|10039018|dbj|BAB13052.1| ribonuclease E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 902

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +  S ++ + I        E S+ +A  D            
Sbjct: 12  EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +           + I+ V++  Q ++VQI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 72  EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N+ K   ISR+I         + +   LE+P  M +I+RTAGA ++   ++ D    ++ 
Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330
           W  ++ +A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q +V LPS G ++++ TEAL +ID+NS RST
Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               I  TA  TNLEA +EI+RQLRLRDL GLIV+DFIDM    + R++E +L+E  + D
Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+ SS+ ES+  +C  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +      ++  YLLN+KR  +   E R  G    +V   ++    + + +  
Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490

Query: 570 PVQALVNTGHKVG 582
             ++   T + + 
Sbjct: 491 KSESKNYTRYGLS 503



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E    +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLP  EI  +Y+
Sbjct: 62 EEKNGFLPLKEISKNYF 78


>gi|255349209|ref|ZP_05381216.1| ribonuclease E [Chlamydia trachomatis 70]
 gi|255503746|ref|ZP_05382136.1| ribonuclease E [Chlamydia trachomatis 70s]
 gi|255507427|ref|ZP_05383066.1| ribonuclease E [Chlamydia trachomatis D(s)2923]
 gi|289525852|emb|CBJ15334.1| ribonuclease E [Chlamydia trachomatis Sweden2]
 gi|296435436|gb|ADH17614.1| ribonuclease E [Chlamydia trachomatis E/150]
 gi|296439153|gb|ADH21306.1| ribonuclease E [Chlamydia trachomatis E/11023]
          Length = 512

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I               + +      DV            +
Sbjct: 51  ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +  A  A    E   E+                                I+E++K    +
Sbjct: 87  DSDADHAEPQPEETSEAP-------------------------------IEELLKLDSPV 115

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P+ R  LK++ R  E
Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  S +   +  + + L+  W ++ E   +   P L+YEE +++K+A+ 
Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K    +++     Y++ K  +    P     +  Y D  P+F R  IE ++D   +
Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+    +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538
               C YC G   I++  S+ + I R +++ +      N+ +  H ++  Y+  ++    
Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAYYMKQEQDDVE 474

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500


>gi|76789551|ref|YP_328637.1| ribonuclease E [Chlamydia trachomatis A/HAR-13]
 gi|237803239|ref|YP_002888433.1| ribonuclease E [Chlamydia trachomatis B/Jali20/OT]
 gi|237805160|ref|YP_002889314.1| ribonuclease E [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76168081|gb|AAX51089.1| ribonuclease E [Chlamydia trachomatis A/HAR-13]
 gi|231273460|emb|CAX10375.1| ribonuclease E [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274473|emb|CAX11268.1| ribonuclease E [Chlamydia trachomatis B/Jali20/OT]
          Length = 512

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I               + +      DV            +
Sbjct: 51  ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +  A  A    E   E+                                I+E++K    +
Sbjct: 87  DSDADHAEPQPEETSEAP-------------------------------IEELLKLDSPV 115

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P+ R  LK++ R  E
Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  S +   +  + + L+  W ++ E   +   P L+YEE +++K+A+ 
Sbjct: 175 MPQNMGLICRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K    +++     Y++ K  +    P     +  Y D  P+F R  IE ++D   +
Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+    +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538
               C YC G   I++  S+ + I R +++ +      N+ +  H ++  Y+  ++    
Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500


>gi|255311645|ref|ZP_05354215.1| ribonuclease E [Chlamydia trachomatis 6276]
 gi|255317946|ref|ZP_05359192.1| ribonuclease E [Chlamydia trachomatis 6276s]
 gi|296436360|gb|ADH18534.1| ribonuclease E [Chlamydia trachomatis G/9768]
 gi|296438219|gb|ADH20380.1| ribonuclease E [Chlamydia trachomatis G/11074]
 gi|297140720|gb|ADH97478.1| ribonuclease E [Chlamydia trachomatis G/9301]
          Length = 512

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I               + +      DV            +
Sbjct: 51  ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +  A  A    E   E+                                I+E++K    +
Sbjct: 87  DSDADHAEPQPEETSEAP-------------------------------IEELLKLDSPV 115

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P+ R  LK++ R  E
Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  S +   +  + + L+  W ++ E   +   P L+YEE +++K+A+ 
Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K    +++     Y++ K  +    P     +  Y D  P+F R  IE ++D   +
Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+    +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538
               C YC G   I++  S+ + I R +++ +      N+ +  H ++  Y+  ++    
Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500


>gi|32490837|ref|NP_871091.1| hypothetical protein WGLp088 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166043|dbj|BAC24234.1| rne [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 783

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 185/490 (37%), Positives = 271/490 (55%), Gaps = 8/490 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I N   +++ + I        E S+ +   D            
Sbjct: 12  EELRIALVDGQKLYDLDIENLRYIQKKSNIYKGKITRIEPSLEAVFIDYGEERHGFLPFK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       +  +  I++++K  Q L+VQI KE RGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAIEYLYKNNIYYNKSNIKDILKENQELIVQIEKEARGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  K   ISR I      + LKEI   LE+P GMG+I+RTAG  ++  ++K D  + +  
Sbjct: 132 NNPKSGGISRHIEGEDRTE-LKEILYSLEIPNGMGIIIRTAGLGKSIKDLKLDLSFRLSH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMP 330
           WD +++ A    AP L+Y E +++ RA RD    DI EI++   K    +K+++  L  P
Sbjct: 191 WDKIKKAAQKKRAPCLIYRESDVVSRAFRDYLRPDIKEILIDNPKILELSKEYIISLGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            + + ++ Y    P+F    IE Q++S  Q EV LPS G + I+ TEAL +ID+NS +ST
Sbjct: 251 DFIKKIKLYSGEVPLFSHYQIESQIESAFQREVKLPSGGSIFIDNTEALTAIDINSAKST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   I +TA  TNLEA  EI+ QLRLRDL GLIV+DFIDM   K+ R VEK LKE  K+D
Sbjct: 311 RGIDISETAFNTNLEAVHEISIQLRLRDLGGLIVIDFIDMNTSKHQREVEKLLKELAKQD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLE+SRQR+  S+ ES+  +C  C G G IR + S++LSILR +EE 
Sbjct: 371 RARIQIGQISKFGLLELSRQRMSHSLRESSHYICPRCNGTGTIRDKESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569
            ++   + +      D+  YLLN+KR  +   E R  GV   ++   ++    + + +  
Sbjct: 431 SIKDNTYKVYTIVPVDIASYLLNEKRDAVSAIEKRKQGVRTVIIPNDKMKTPNYLVLRVK 490

Query: 570 PVQALVNTGH 579
             +      +
Sbjct: 491 IGEQSNIPSY 500



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE R+ ++   ++ +LD E+    Q K NIY  K+TR+EPSL+A F+DYG
Sbjct: 2   KRMLINATQQEELRIALVDGQKLYDLDIENLRYIQKKSNIYKGKITRIEPSLEAVFIDYG 61

Query: 63  GNRHGFLPFLEIHPDY-YQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
             RHGFLPF EI  +Y Y+      ++ +K+      +     +    G+
Sbjct: 62  EERHGFLPFKEIAIEYLYKNNIYYNKSNIKDILKENQELIVQIEKEARGN 111


>gi|91225602|ref|ZP_01260676.1| cytoplasmic axial filament protein [Vibrio alginolyticus 12G01]
 gi|254229268|ref|ZP_04922686.1| ribonuclease, Rne/Rng family [Vibrio sp. Ex25]
 gi|262393160|ref|YP_003285014.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           sp. Ex25]
 gi|269968022|ref|ZP_06182060.1| cytoplasmic axial filament protein [Vibrio alginolyticus 40B]
 gi|91189722|gb|EAS75996.1| cytoplasmic axial filament protein [Vibrio alginolyticus 12G01]
 gi|151938192|gb|EDN57032.1| ribonuclease, Rne/Rng family [Vibrio sp. Ex25]
 gi|262336754|gb|ACY50549.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           sp. Ex25]
 gi|269827379|gb|EEZ81675.1| cytoplasmic axial filament protein [Vibrio alginolyticus 40B]
          Length = 489

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 122/565 (21%), Positives = 211/565 (37%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E ++ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGVLQEIHIERESRRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + E+   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAENEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++ K+              
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEKERERLKKV------------- 157

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
              +      + G  + T    A                  K  +       +   + +E
Sbjct: 158 ---VNHYCDEHGGFIIRTAAEGADE----------------KELSQDAAFLKRLWLKVME 198

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
             +         G       I R                             + +   + 
Sbjct: 199 RRSKYKTRSTLYGELGLAQRILR-----------------------------DFVGTELD 229

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +      E     E       +    L                   +  +E +++    
Sbjct: 230 KIMVDSRLEYENLKEFTSEYVPELTDKLELYEGDKPIFDMYDTENEIQRSLERKVE---- 285

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
               L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  +++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMASEEHRQRVLTSLETALAKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A N +V+    V   LL  +   + 
Sbjct: 402 CSGCPTCEGRGSVKTVETVCFEILREITRVNRAYDADNFVVYASPFVAEALLGDESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + V        + F +
Sbjct: 462 ELEVFIGKQVRVQAEPLYIQEQFDV 486


>gi|71905822|ref|YP_283409.1| ribonuclease G [Dechloromonas aromatica RCB]
 gi|71845443|gb|AAZ44939.1| RNAse G [Dechloromonas aromatica RCB]
          Length = 483

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 210/407 (51%)

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
             P++   +  I++++ + Q +LVQ+VK+  G KGA ++T +S+AGR  V +P       
Sbjct: 74  WQPRETATERPIEKILHDGQSILVQVVKDPIGTKGARLSTQVSIAGRMLVYLPQEKHIGI 133

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
             R  +        ++I R +      G I+RT   S +  E   D  YL + W ++R+ 
Sbjct: 134 SQRIESEAEREVLREKITRLVPSDEPGGFIVRTMAESASDEEFATDIAYLRKTWADIRDK 193

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
           A  S  P L+Y+E +L +R +RD    + + I +   + +++   F +   P+   ++  
Sbjct: 194 ARTSGPPTLLYQELSLGQRVLRDFVNPETTRIFIDSRENFQKLTGFAEEYTPAVLPLLEH 253

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y    P+F   G+E ++       V L S GY+II+QTEA+ +IDVN+G        +DT
Sbjct: 254 YTGQRPLFDLHGVEEEIQKALARRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGVRNFDDT 313

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEAA  IARQLRLR+L G+I+VDFIDME +++ ++V  +   +L  D  R+ V  
Sbjct: 314 IFKTNLEAAVTIARQLRLRNLGGIIIVDFIDMENEEHKKAVLDEFNRALAHDHTRLTVNG 373

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            +  GL+EM+R+R R S+       C  C G G +++  +VA  ILR +     Q+ A  
Sbjct: 374 FTQLGLVEMTRKRTRESLAHVLCHPCPTCTGRGEVKTARTVAYEILRELLREARQFNARE 433

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +    DVV   L+++   +       G S+++      + + + I
Sbjct: 434 YRILAGPDVVDLFLDEESQALAMLSDFIGKSVSLQSEPSYSPEQYDI 480



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV V++   V+EL  E    + + GN+YL +V R+ P +Q+AF+D
Sbjct: 1  MTEEILINFT-PQETRVAVMQQGVVQELHIERTASRGLVGNVYLGRVVRILPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   +I
Sbjct: 60 VGLDRTAFLHVADI 73


>gi|219682261|ref|YP_002468645.1| ribonuclease E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621994|gb|ACL30150.1| ribonuclease E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 902

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +  S ++ + I        E S+ +A  D            
Sbjct: 12  EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +           + I+ V++  Q ++VQI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 72  EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N+ K   ISR+I         + +   LE+P  M +I+RTAGA ++   ++ D    ++ 
Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330
           W  ++ +A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q +V LPS G ++++ TEAL +ID+NS RST
Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               I  TA  TNLEA +EI+RQLRLRDL GLIV+DFIDM    + R++E +L+E  + D
Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+ SS+ ES+  +C  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +      ++  YLLN+KR  +   E R  G    +V   ++    + + +  
Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490

Query: 570 PVQALVNTGHKVG 582
             ++   T + + 
Sbjct: 491 KSESKNYTRYGLS 503



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E    +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLP  EI  +Y+
Sbjct: 62 EEKNGFLPLKEISKNYF 78


>gi|86143783|ref|ZP_01062159.1| Ribonuclease G [Leeuwenhoekiella blandensis MED217]
 gi|85829826|gb|EAQ48288.1| Ribonuclease G [Leeuwenhoekiella blandensis MED217]
          Length = 511

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 160/568 (28%), Positives = 267/568 (47%), Gaps = 64/568 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N+++I  S        +L+D ++ EL  + E  +   G+I++AK+ +    L AAFV+
Sbjct: 1   MNNELII-RSSSTSVDFALLKDGKLIELHKDEEDNQFSVGDIFIAKIRKTVSGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P   Q+P      LLK      T       D +  +     D   
Sbjct: 60  VGYEKDAFLHYHDLGP---QLPT-----LLKFVKRVSTGKLK---DFSLKNFPAEKDID- 107

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                                        +   I + +K+ Q +
Sbjct: 108 ---------------------------------------------KNGKIADAVKSNQSI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE    KG  +++ LS+AGRY VL+P + +  +IS+KI +  ++  LK + + + 
Sbjct: 123 LVQVVKEPISTKGPRISSELSIAGRYVVLVPFSDR-ISISQKIESREEKARLKRLMQSIR 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G GVI+RT    +   E+ +D + L+  W  + +   N+  P  V  E N     +R
Sbjct: 182 PK-GFGVIVRTVAEGKMVAELDKDLQNLVDRWTAMCKKLHNAHLPSKVLGEMNRASSMLR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+    + I V  E  Y + KD+++ + P+   IV+ Y++  PI+ + GIE Q+ +   
Sbjct: 241 DLFNDSFTNICVDDETLYYQIKDYLQEIAPNKESIVKLYQNTVPIYEKHGIERQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEAL  IDVNSG RS++    EDTAL+ NL AA EIARQLRLRD+
Sbjct: 301 KTVSMSRGAYLVIEHTEALHVIDVNSGNRSSKAKSQEDTALEVNLIAATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM + +N + +   L++ +  DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMGKAENRKKLFNHLRDEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +      G G I +  SV   I  +    L +     I +HTH  +  +L     +  
Sbjct: 421 TREKDP--NGDGEIEAPISVVNRIQ-ADLIKLFKKDYKKITLHTHPFIAAFLTKGFPSVR 477

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEK 567
            ++       + ++         +   K
Sbjct: 478 SKWFLEHKKWVKIMPRDAYTYLEYRFTK 505


>gi|257471402|ref|ZP_05635401.1| ribonuclease E [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
          Length = 902

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +  S ++ + I        E S+ +A  D            
Sbjct: 12  EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +           + I+ V++  Q ++VQI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 72  EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N+ K   ISR+I         + +   LE+P  M +I+RTAGA ++   ++ D    ++ 
Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330
           W  ++ +A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q +V LPS G ++++ TEAL +ID+NS RST
Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               I  TA  TNLEA +EI+RQLRLRDL GLIV+DFIDM    + R++E +L+E  + D
Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+ SS+ ES+  +C  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +      ++  YLLN+KR  +   E R  G    +V   ++    + + +  
Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490

Query: 570 PVQALVNTGHKVG 582
             ++   T + + 
Sbjct: 491 KSESKNYTRYGLS 503



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E    +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLP  EI  +Y+
Sbjct: 62 EEKNGFLPLKEISKNYF 78


>gi|219681706|ref|YP_002468092.1| ribonuclease E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219624549|gb|ACL30704.1| ribonuclease E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 902

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +  S ++ + I        E S+ +A  D            
Sbjct: 12  EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +           + I+ V++  Q ++VQI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 72  EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N+ K   ISR+I         + +   LE+P  M +I+RTAGA ++   ++ D    ++ 
Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330
           W  ++ +A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q +V LPS G ++++ TEAL +ID+NS RST
Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               I  TA  TNLEA +EI+RQLRLRDL GLIV+DFIDM    + R++E +L+E  + D
Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+ SS+ ES+  +C  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +      ++  YLLN+KR  +   E R  G    +V   ++    + + +  
Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490

Query: 570 PVQALVNTGHKVG 582
             ++   T + + 
Sbjct: 491 KSESKNYTRYGLS 503



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E    +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLP  EI  +Y+
Sbjct: 62 EEKNGFLPLKEISKNYF 78


>gi|167625740|ref|YP_001676034.1| ribonuclease G [Shewanella halifaxensis HAW-EB4]
 gi|167355762|gb|ABZ78375.1| ribonuclease, Rne/Rng family [Shewanella halifaxensis HAW-EB4]
          Length = 502

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 122/562 (21%), Positives = 212/562 (37%), Gaps = 80/562 (14%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++LI+ +   E RV ++    ++E+  E   K+ + GNIY  KV+RV P +QAAFVD G 
Sbjct: 18  ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 76

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           ++  FL   +I P  +    +D +               +A+ V  G   +         
Sbjct: 77  DKAAFLHASDIVP--HTECVADVEK-------GNFVVRDIAELVRQGQDIMVQVVKDPLG 127

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
              A  + +    S         S+V   +    E+V  + K+                 
Sbjct: 128 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEVRARLKK----------------I 171

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
                  + G  + T    AG   ++     +     R++   V  +  +     L    
Sbjct: 172 TQPFVDDDGGFIIRTAAESAGEDELV-----QDAGFLRRVWAKVSERRKRRGVSLLYQDL 226

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            + V +          +I+ D            +  +  +A  L +  G +    + D  
Sbjct: 227 ALPVRIVRDFVGTELDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYD-- 284

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
                                                          +E ++      +V
Sbjct: 285 -----------------------------------------------VENEVQRALGRKV 297

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY+II+QTEA+ ++D+N+G       + +T   TNLEA   IARQLRLR+L G+I
Sbjct: 298 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGII 357

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           ++DFIDM   ++ + V   L+ +L KDR +  +   S  GL+EM+R+R R S+       
Sbjct: 358 IIDFIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 417

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G +++  +V+  I R +      Y A   +V+   +V   L   +   + E E
Sbjct: 418 CPACLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELE 477

Query: 544 ARFGVSINVVIGIELADKLFYI 565
              G  + +      A   F +
Sbjct: 478 VYIGKRVRLQNEPMYAQNKFDV 499


>gi|311086656|gb|ADP66737.1| ribonuclease E [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 902

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +  S ++ + I        E S+ +A  D            
Sbjct: 12  EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +           + I+ V++  Q ++VQI KEERG KGAA+TT++SLAG Y VLMP
Sbjct: 72  EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N+ K   ISR+I         + +   LE+P  M +I+RTAGA ++   ++ D    ++ 
Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330
           W  ++ +A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q +V LPS G ++++ TEAL +ID+NS RST
Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               I  TA  TNLEA +EI+RQLRLRDL GLIV+DFIDM    + R++E +L+E  + D
Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+ SS+ ES+  +C  C G G IR   S++LSILR +EE 
Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   + +      ++  YLLN+KR  +   E R  G    +V   ++    + + +  
Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490

Query: 570 PVQALVNTGHKVG 582
             ++   T + + 
Sbjct: 491 KSESKNYTRYGLS 503



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD E    +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLP  EI  +Y+
Sbjct: 62 EEKNGFLPLKEISKNYF 78


>gi|166154150|ref|YP_001654268.1| ribonuclease E [Chlamydia trachomatis 434/Bu]
 gi|166155025|ref|YP_001653280.1| ribonuclease E [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335391|ref|ZP_07223635.1| ribonuclease E [Chlamydia trachomatis L2tet1]
 gi|165930138|emb|CAP03622.1| ribonuclease E [Chlamydia trachomatis 434/Bu]
 gi|165931013|emb|CAP06576.1| ribonuclease E [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 512

 Score =  281 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I               + +      DV            +
Sbjct: 51  ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +  A  A    E   E+                                I+E++K    +
Sbjct: 87  DSDADHAEPRPEETSEAP-------------------------------IEELLKLDSPV 115

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P+ R  LK++ R  E
Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  S +   +  + + L+  W ++ E   +   P L+YEE +++K+A+ 
Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K    +++     Y++ K  +    P     +  Y D  P+F R  IE ++D   +
Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+    +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538
               C YC G   I++  S+ + I R +++ +      N+ +  H ++  Y+  ++    
Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500


>gi|15605542|ref|NP_220328.1| ribonuclease E [Chlamydia trachomatis D/UW-3/CX]
 gi|3329275|gb|AAC68404.1| Axial Filament Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|296437291|gb|ADH19461.1| ribonuclease E [Chlamydia trachomatis G/11222]
          Length = 512

 Score =  281 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 160/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I               + +      DV            +
Sbjct: 51  ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +  A  A    E   ++                                I+E++K    +
Sbjct: 87  DSDADHAEPQPEETSKAP-------------------------------IEELLKLDSPV 115

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P+ R  LK++ R  E
Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  S +   +  + + L+  W ++ E   +   P L+YEE +++K+A+ 
Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K    +++     Y++ K  +    P     +  Y D  P+F R  IE ++D   +
Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+    +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538
               C YC G   I++  S+ + I R +++ +      N+ +  H ++  Y+  ++    
Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500


>gi|39996024|ref|NP_951975.1| ribonuclease, Rne/Rng family protein [Geobacter sulfurreducens PCA]
 gi|39982789|gb|AAR34248.1| ribonuclease, Rne/Rng family protein [Geobacter sulfurreducens PCA]
          Length = 808

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 197/551 (35%), Positives = 295/551 (53%), Gaps = 8/551 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++  +   D E    + T G+V       +E     A F     +      
Sbjct: 12  PEESRVAIVEDGKLVDLDIEIEGSEQTRGNVYKGVVVRVE-PGLQAAFVDIGLKRLGFLQ 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
             ++  +    +   PE+      R+  IQEVI+  Q L+VQ+ K ER  KGAA+TTY+S
Sbjct: 71  MGEIHPSFWQWRSDIPEESRS---RRPRIQEVIRRGQELIVQVEKGERDMKGAALTTYMS 127

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
             GRY VLMP  S    ISRK+ +  DRK LKE    LE+P G G I+RT    +TK E+
Sbjct: 128 FPGRYMVLMPG-SDSAGISRKVESESDRKKLKEKVAELEIPEGYGYIVRTEALGKTKTEL 186

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D +YL++L   + + A  +  P L++ E +++ R IRD +  +I E++V  +  Y++A
Sbjct: 187 AKDLQYLVKLHQGIVDKAAAAKGPTLLHRELDVVIRTIRDYFTAEIDEVLVDSKDVYKQA 246

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           ++F K  MP + ++V+ + +  PIF R  IE Q+D +++ +V L S GY+II  TEALVS
Sbjct: 247 REFFKQTMPKFEKLVKLHTEKRPIFSRYQIEEQIDLIYEKKVPLKSGGYLIIEPTEALVS 306

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG++T E  +EDTA +TNLEAAEE ARQLR+RDL GLIV+DFIDM +KK+  +VEK
Sbjct: 307 IDVNSGKTTGEKGVEDTAYKTNLEAAEEAARQLRMRDLGGLIVLDFIDMRDKKHITAVEK 366

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK +LK D+ARV VG IS FG+LEMSRQRIR ++ + +T  C +C G G ++S  ++AL
Sbjct: 367 TLKAALKGDKARVTVGRISQFGMLEMSRQRIRQTLEQGSTLECPHCSGRGKVKSVENMAL 426

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S LR V     + T   +      +V  YLLN+K+  + + E  + + + V         
Sbjct: 427 SFLRKVHAAAAKGTVAEVHGGLPLEVAYYLLNRKKRELAQIENEYDIVVTVKGKTSFLMN 486

Query: 562 LFYIE---KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
              +E   +  P     +  H                      A     ++E  +  +  
Sbjct: 487 QLELELVRREKPAHVETHEEHAEKVAEALAEGLPEAAEGTDVPAEASTAETEGKKKKRRR 546

Query: 619 IVSEESTGVIR 629
              +       
Sbjct: 547 SRRKGKAEAEE 557



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 4/105 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA KMLI+  H EE+RV ++ D ++ +LD E E  +Q +GN+Y   V RVEP LQAAFVD
Sbjct: 1   MAKKMLINVMHPEESRVAIVEDGKLVDLDIEIEGSEQTRGNVYKGVVVRVEPGLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQ----IPFSDRQALLKESNIAQTDSE 101
            G  R GFL   EIHP ++Q    IP   R    +   + +   E
Sbjct: 61  IGLKRLGFLQMGEIHPSFWQWRSDIPEESRSRRPRIQEVIRRGQE 105


>gi|197116559|ref|YP_002136986.1| ribonuclease G [Geobacter bemidjiensis Bem]
 gi|197085919|gb|ACH37190.1| ribonuclease G [Geobacter bemidjiensis Bem]
          Length = 496

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 142/565 (25%), Positives = 247/565 (43%), Gaps = 72/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N+++I+ +   ETR+ ++ +  + EL  E    K I GNIY  +V RV P +QAAFVD
Sbjct: 1   MGNELVINTT-SHETRIALIENGTIAELYVERSRVKGIIGNIYKGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++                          +A+ +  ++ +    ++   
Sbjct: 60  IGLEKAAFLYVADV-------------------------FDAMDEYDSYIEGEQGDEPMP 94

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
             + PI    QE +E  +  +   + +       G+          ++ +     +   +
Sbjct: 95  HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 148

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +   +   +   G           G  I R +++    ++L      L 
Sbjct: 149 SRRIEDEAERERLKEIVDRIKPVG-----------GGFIVRTVSDGKSEEDLVADLHYLT 197

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I +    +     I  D +   ++  ++   ++  +                 
Sbjct: 198 KLWDE--IAKKKDKAGAPTLIHSDLDVTQKVVRDILTESVERI----------------- 238

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                     +V  +  Y +   F+   MP     +  Y++  PIF   G+EV++     
Sbjct: 239 ----------VVDSKPEYDKIVQFISTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 288

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR+L 
Sbjct: 289 RKVWLKSGGYIIIEQTEALTAIDVNTGRYVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 348

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+E+LK D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 349 GIIIIDFIDMEKEVNREKVYGALEEALKSDKSKTNILKISELGLVEMTRKRVRESLGRMM 408

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+ SV   I R +   +L      +++  H  V   L +++R  + 
Sbjct: 409 CEPCPYCEGRGYVKSKISVCHEIFRELRREMLDIRGTKVMLTVHPQVADLLYDEERRGLE 468

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E  F   I V        + F +
Sbjct: 469 ELEKNFKKRITVRAKPGFHQEQFEV 493


>gi|115380147|ref|ZP_01467180.1| ribonuclease G [Stigmatella aurantiaca DW4/3-1]
 gi|115362852|gb|EAU62054.1| ribonuclease G [Stigmatella aurantiaca DW4/3-1]
          Length = 905

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 153/584 (26%), Positives = 257/584 (44%), Gaps = 7/584 (1%)

Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186
                   E+     + D      +      +D   K ++   I++++K  Q ++VQI K
Sbjct: 300 EAREPRHREKDRDGRDKDKSRRPREEHSRREKDEKSKVRKSSRIEDLLKVGQEVVVQISK 359

Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246
           +  G KGA +T+++S+ GR+ V MP       ISR+I+N  +RK L+EI   L  P G G
Sbjct: 360 DPIGTKGARLTSHISIPGRHLVFMPTVDHVG-ISRRISNEKERKRLREIVDRLRPP-GTG 417

Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
            I+RT   +  + +++ D  +L+ +W+ V         P L++ + +LI RA RDL+  D
Sbjct: 418 FIVRTVAENVPQEKLETDIRFLIEVWNQVVRRNEKRGGPGLLHPDLDLILRATRDLFAHD 477

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
           + +++V   + Y     F+    P     V  +E   P+F   GIE ++    Q +V L 
Sbjct: 478 VEKLVVDDREEYERILAFVTAQDPLLKDRVVLHEGDEPVFDAYGIEQEMHRATQRKVWLK 537

Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
           S GY+II+Q EAL +IDVNSGR   +  +E+T  + N+EAA+EI  QLRLR++ G+I+ D
Sbjct: 538 SGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICD 597

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDME+ +N   V K L+E+L +D+A+  V  IS  GL+EM+R+R+R S+     + C Y
Sbjct: 598 FIDMEKAQNRDKVFKSLQEALGRDKAKTNVLRISELGLVEMTRKRVRESIGRVLHEDCPY 657

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G G++++ ++V   I R +      Y    ++++  ++V   L  ++R  +     R+
Sbjct: 658 CDGRGFVKTATTVTYEIFREIRREAPGYKDSTLVINCSAEVARQLQGEERQELRHLMDRY 717

Query: 547 GVSINVVIGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---- 601
             SI V        + + I  +                D +     +       +     
Sbjct: 718 NKSIQVKAQQNYHREQYDIYGRSGMGPEHKVASSPGSGDGELAMQRRPENGGHGERYRQE 777

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                       +  D     +      +  R    R                  +N   
Sbjct: 778 QGRRGGGRGDRNERGDRGERGDRNERGDRGERGGGERGGGERGGGERGDRGERGERNDRG 837

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
           D  +         N      G               +TPE  SS
Sbjct: 838 DRREGRRPDRGDRNRGGERRGDERRGGESQRPPQAAATPEPSSS 881



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M + ++I+A+   ETRV ++    + E   E +  K + GNIY  +V RV P +QAAFVD
Sbjct: 1   MGSILVINAA-GRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIH--PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118
            G  +  FL   ++   PD+ +  F   +   ++     T+SEA A +   GD     D 
Sbjct: 60  IGLEKAAFLYVSDVVYDPDFARAQFELTEGEHEDFPEVPTESEAEAAEAAAGDTPAGPDT 119

Query: 119 SLE-EVAPIANFSQETEEESIISANNDVVSNV 149
            LE EV  +A       +    +   + V+ V
Sbjct: 120 ELELEVQELAPGELPPPQGEPPALPPEAVATV 151


>gi|94501795|ref|ZP_01308308.1| Ribonucleases G and E [Oceanobacter sp. RED65]
 gi|94426103|gb|EAT11098.1| Ribonucleases G and E [Oceanobacter sp. RED65]
          Length = 491

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 126/411 (30%), Positives = 218/411 (53%), Gaps = 3/411 (0%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
           +D     ++   I  ++   Q L+VQ+ K+  G KGA +TT+LS+  RY V MP +    
Sbjct: 78  KDSEAAKRQPDAITSLVHEGQSLVVQVTKDPIGTKGARLTTHLSIPSRYLVFMPYSQHVG 137

Query: 218 TISRKITNPVDRKNLKEIARGLEVP---AGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
              R        +  K +   +E        G ILRTA     + EI  D  YL R+W  
Sbjct: 138 ISQRIEDEGERDRLRKLVLSCMEAEGLSDECGFILRTAAEGAGEDEILMDTRYLQRVWGK 197

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           V+E   ++ AP ++YEE  L  R  RD    ++ ++++   + + +A++F +  +P    
Sbjct: 198 VQERMKSADAPSVIYEELPLHLRTFRDFIRPEVDKVLIDSRENFSKAQEFAQSFVPEVEN 257

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +IDVN+G       
Sbjct: 258 KLEYYPGERPIFDLYAVEDEIQKALERKVQLKSGGYLIIDQTEAMTTIDVNTGGFVGHRN 317

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +E+T  +TNLEAA  I RQLRLR+L G+I++DFIDME+ ++ R V + L++ L+KD A+ 
Sbjct: 318 LEETIFKTNLEAATVIGRQLRLRNLGGIIILDFIDMEDVEHQRQVLRMLEKVLEKDHAKT 377

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           ++  +S  GL+EM+R+R R S+ +   + C +C G G I++  ++   I R +      Y
Sbjct: 378 KISQVSELGLVEMTRKRTRESLGQMICEPCHHCDGRGTIKTAETICYEIFRELLREARAY 437

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            A+  +V     V+   L+++  ++ + E   G +I + +    + + + +
Sbjct: 438 DANGYLVLASQGVIDLFLDEESQSLADLENFIGKTIKLQVEPLYSQEQYDV 488



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/458 (13%), Positives = 130/458 (28%), Gaps = 46/458 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++L++ +   ETR+ ++ +  ++E+  E  +++ I GNIY  KV RV P +QAAFVD
Sbjct: 1   MNTEILLNVT-PTETRMGLVENGVLQEVSIERSNRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  F+   +IH      P  D +A       A+   +A+   V  G   +      
Sbjct: 60  VGLERAAFIHAADIH-----GPAKDSEA-------AKRQPDAITSLVHEGQSLVVQVTKD 107

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI- 179
                 A  +      S          +V   +    E    + ++        +     
Sbjct: 108 PIGTKGARLTTHLSIPSRYLVFMPYSQHVGISQRIEDEGERDRLRKLVLSCMEAEGLSDE 167

Query: 180 --LLVQIVKEERGNKGAAVTT------------YLSLAGRYSVLMPNTSKGETISRKITN 225
              +++   E  G     + T             +  A   SV+           R    
Sbjct: 168 CGFILRTAAEGAGEDEILMDTRYLQRVWGKVQERMKSADAPSVIYEELPLHLRTFRDFIR 227

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASR-----TKIEIKRDFEYLMRLWDNVRELAL 280
           P   K L +                    ++      +  I   +     +   +     
Sbjct: 228 PEVDKVLIDSRENFSKAQEFAQSFVPEVENKLEYYPGERPIFDLYAVEDEIQKALERKVQ 287

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
                +L+ ++   +     +         +             +         +     
Sbjct: 288 LKSGGYLIIDQTEAMTTIDVNTGGFVGHRNLEETIFKTNLEAATVIGRQLRLRNLGGIII 347

Query: 341 DPHPIFFRSGIEVQLDSLHQT-------EVTLPSRGYVIINQT------EALVSIDVNSG 387
                      + Q+  + +        +  +     + + +       E+L  +     
Sbjct: 348 LDFIDMEDVEHQRQVLRMLEKVLEKDHAKTKISQVSELGLVEMTRKRTRESLGQMICEPC 407

Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425
                     TA     E   E+ R+ R  D  G +V+
Sbjct: 408 HHCDGRGTIKTAETICYEIFRELLREARAYDANGYLVL 445


>gi|256419986|ref|YP_003120639.1| ribonuclease, Rne/Rng family [Chitinophaga pinensis DSM 2588]
 gi|256034894|gb|ACU58438.1| ribonuclease, Rne/Rng family [Chitinophaga pinensis DSM 2588]
          Length = 516

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 150/567 (26%), Positives = 258/567 (45%), Gaps = 65/567 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I+A+      + +L D ++ EL  ES +     G++YL +V ++ P L AAFVD
Sbjct: 1   MNKELIINAA-PTGVEIALLEDKKLVELHHESGNPNFSVGDLYLGRVKKLIPGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P    I    +QA+                               
Sbjct: 60  VGFEKDAFLHYTDLSPYIRSILKFTQQAI------------------------------- 88

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                    S +T E    +   +    V                +   I +V+  +  +
Sbjct: 89  ---------SDKTPEGFDFTKFKNEPEIV----------------KTGKITDVLGGKPNI 123

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQI+KE   +KG  ++  +SL GR+ VL P       +S+KI +  +RK L++I   ++
Sbjct: 124 LVQILKEPISSKGPRLSCEISLPGRFIVLTPFND-IVAVSKKIHSSEERKRLQKIVEAIK 182

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   GVI+RTA   +   E+  D   L+  W N++     +  P  +  E       +R
Sbjct: 183 TP-NFGVIVRTAAEGKKTAELHEDLTTLVETWKNIQANLRGAQPPQKILSEQAKTTSILR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL  +  + I+++    Y + + +++ + P    IV+ Y +  PIF   G+  Q+ +   
Sbjct: 242 DLLNESFNRIVINDRNMYSDTRAYIQKIAPEKQDIVQHYHNGAPIFDHYGVTRQVKASFG 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S  Y+II  TEAL  IDVNSG  +  +  E  AL +NLEAA EIARQLRLRDL 
Sbjct: 302 KTVNLDSGVYLIIEATEALHVIDVNSGYKSSSNNQEQNALASNLEAAAEIARQLRLRDLG 361

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+  +N + V + +++ + +DRA+  +  IS FGL++++RQR++  V  S 
Sbjct: 362 GIIIIDFIDMKLPENKKVVYEAMEKFMAQDRAKHTILPISKFGLMQITRQRVKPEVTISV 421

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK---RA 537
            + C  C G G I +   +   + ++++  +       + +  H     YL       R 
Sbjct: 422 AEDCPTCHGTGKIGASVLIIDEVEKNLQYLINHQ-HKGLTLRVHPIFYSYLAKGFLTSRQ 480

Query: 538 TIVEYEARFGVSINVVIGIELADKLFY 564
               ++  +   + V          + 
Sbjct: 481 WKWYFQ--YKKWVKVKADSNYHLTEYR 505


>gi|89898012|ref|YP_515122.1| ribonuclease G/E [Chlamydophila felis Fe/C-56]
 gi|89331384|dbj|BAE80977.1| ribonuclease G/E [Chlamydophila felis Fe/C-56]
          Length = 510

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 168/566 (29%), Positives = 284/566 (50%), Gaps = 70/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I                       D+  +G + I +    
Sbjct: 51  ----RN-------IQSAFINI-----------------------DERENGFIHISDV--- 73

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                        + E +   + DV+S     K  +P            I+E++K    +
Sbjct: 74  --------LENSKKFEQMFDMDFDVLSKENGEKPEAP------------IEELLKLDSPV 113

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P  R  LK++ R  E
Sbjct: 114 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFE 172

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA    +   +  +   L+  W  + E   ++  P L+YEE +++K+A+ 
Sbjct: 173 MPQDMGLICRTASTLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVI 232

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K+   +++     Y++ K  +K   P  +  +  Y D  P+F R  IE ++D   +
Sbjct: 233 TCIDKNHKRLLIDDYSTYQKCKRMLKKYSPDSSVKIEYYRDSTPMFERFNIEKEIDKATK 292

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 293 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 352

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 353 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 412

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RAT 538
               C YC G   I++  SV + I R +++ +      N+ +  H ++  Y+  +K    
Sbjct: 413 LFTTCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHTNLCLVVHPEIANYMKQEKDDDE 472

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++         + +     L    + 
Sbjct: 473 LIRLAKHLKAKLQINTSDSLHLNHYQ 498


>gi|218779045|ref|YP_002430363.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01]
 gi|218760429|gb|ACL02895.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01]
          Length = 487

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 170/419 (40%), Positives = 252/419 (60%), Gaps = 1/419 (0%)

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
                  +           I+ ++K    LLVQI K+    KGA +TT++SLAGRY VLM
Sbjct: 70  QKNEIHSDYFMDTHSGDTAIKNLLKPGMELLVQITKDPVDKKGAMLTTFISLAGRYVVLM 129

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           P  SK   +SRKI    +R  LK+I     +P G GVI+RT G   TK  I +D ++L R
Sbjct: 130 PG-SKTRGVSRKIEEEEERVRLKKILDSCTIPEGFGVIVRTVGKKGTKSVISQDIKHLHR 188

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW  + +  +   AP L+ +E +L  R++RD +  D++ I+V     Y E K+FM ++ P
Sbjct: 189 LWKTINKKGIEEKAPALLNKEQSLAIRSLRDNFNADVNSILVDDPNAYEEIKEFMSVIAP 248

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              ++VR +++  PIF +  +E+Q+ S+ +++V L S G ++I+ TEALVSIDVNSG+ST
Sbjct: 249 RRKKVVRLHKEERPIFSKYQLEMQIASIFESKVNLKSGGSIVIHPTEALVSIDVNSGKST 308

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +E  +E TAL+T+LEAAEEIARQLRLRDL GLIVVDFIDM + KN  +VEK +++  K D
Sbjct: 309 KEASVEKTALKTDLEAAEEIARQLRLRDLGGLIVVDFIDMRDVKNRTAVEKAMRQHAKLD 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           +AR+++G IS FGL+EMSRQRI  S+   +   C +C G G + S  ++AL  LR +   
Sbjct: 369 KARMKIGRISQFGLMEMSRQRISPSIDYGSYLTCPHCHGKGRVPSLETMALDFLRKLRSQ 428

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           +++    ++     ++V  YLLN+KR  + + E R  V+I +     L     +I    
Sbjct: 429 IIKEGVKSMEGMVPANVAEYLLNKKRRELNDLELRHDVTIVIRPDKGLVPGESHIHAEK 487



 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 58/110 (52%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++L++A   EE R+ +++DN +E    E+  ++  +GN+Y   + RVEPSLQA FVD
Sbjct: 1   MTTRILVNAVDPEECRIAIVKDNNLEGFHIETAAREITRGNVYKGVIARVEPSLQAVFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110
           YG +RHGFL   EIH DY+    S   A+             +  D    
Sbjct: 61  YGADRHGFLQKNEIHSDYFMDTHSGDTAIKNLLKPGMELLVQITKDPVDK 110


>gi|163857420|ref|YP_001631718.1| putative ribonuclease [Bordetella petrii DSM 12804]
 gi|163261148|emb|CAP43450.1| putative ribonuclease [Bordetella petrii]
          Length = 526

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 208/410 (50%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                  +      I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P+   
Sbjct: 114 ENRSERSQGLTPTAIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 173

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +     +  + +   +      G+I+RT     T  E+  D EYL +LW  V
Sbjct: 174 IGISQKIDSEAERTQLRERLQALIPEDEKGGLIVRTQAEGATDEELSADLEYLRKLWSRV 233

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A +  AP L++++  L +R +RD+   +   I V          ++ ++  PS A  
Sbjct: 234 QAAARSQPAPALLHQDLTLAQRVLRDMVGPNTGVIQVDSRTTTTALTEWARVYTPSVADR 293

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           ++ Y    P+F  + ++ ++       V L S GY+II+QTEAL ++DVN+G        
Sbjct: 294 IQHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 353

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G++++DFIDME+ ++  +V  +LK++L +DR R+ 
Sbjct: 354 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDPEHRETVLAELKKALARDRTRMT 413

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+  G +R+  +V   ILR +     Q+ 
Sbjct: 414 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCEARGTVRTARTVCYEILREILREARQFN 473

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +     VV   L ++   +       G  +++ +    + + + I
Sbjct: 474 PREFRILASQSVVDLFLEEESQHLAMLGDFVGKPVSLEVETAYSQEQYDI 523


>gi|225010185|ref|ZP_03700657.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C]
 gi|225005664|gb|EEG43614.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C]
          Length = 516

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 155/566 (27%), Positives = 257/566 (45%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  + LI  S+       +L+D ++ EL  E ++ K   G+I++AKV +    L AAFV+
Sbjct: 1   MVKRELIIRSNSTTVDFALLKDGKLTELSKEEDNNKFSVGDIFIAKVRKPISGLNAAFVN 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P                          +   +         D SL
Sbjct: 61  VGYEKDAFLHYHDLGPQ----------------------LSTMLKFIKRASTGKMRDFSL 98

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           + VA   +  ++      I AN                                     +
Sbjct: 99  KNVAFEPDIDKDGTINDAIKANQS-----------------------------------I 123

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +++ LS+AGRY V++P + +  ++S+KI +  ++  LK + + ++
Sbjct: 124 LVQIVKEPISTKGPRISSELSIAGRYLVMVPFSDR-VSVSQKIESKEEKDRLKRLVKSIK 182

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G GVI+RT    +   E+ RD + L+  W  + +    +  P  V  E N     +R
Sbjct: 183 PK-GFGVIIRTVAEGKKVAELDRDLQNLLNKWTVMCKKLHKAPHPSKVLVELNRASSILR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    S I V  E  Y + KD+++ + P    IV+ YE   PIF + GIE Q+ +   
Sbjct: 242 DVFNDSFSGIHVDDETLYTQVKDYVQEIAPEKESIVKLYEATEPIFEKFGIERQIKTSFG 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              T+    Y++I  TEAL  IDVNSG RS +    EDTAL  NL AA EIARQLRLRD+
Sbjct: 302 KTATMSKGAYLVIEHTEALHVIDVNSGNRSNKAKNQEDTALDVNLSAATEIARQLRLRDM 361

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM +  + + +   L E +K+DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 362 GGIIVVDFIDMAKGDHRKKLFDHLSEEMKEDRAKHKILPPSKFGLIQITRQRVRPEMNIK 421

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRAT 538
           TT+      G   + +   +   I   +++  +     H + ++ H  +  YL     + 
Sbjct: 422 TTEPLPTITGK-EVEAPIVLLDKITADLQKLFVGPSKDHKVTLNVHPFIAAYLSQGIPSI 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             ++   +   + +          + 
Sbjct: 481 RQKWFLEYKKWVKIQPRDAYQYLEYR 506


>gi|187478718|ref|YP_786742.1| ribonuclease G [Bordetella avium 197N]
 gi|115423304|emb|CAJ49838.1| ribonuclease G [Bordetella avium 197N]
          Length = 487

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 117/410 (28%), Positives = 206/410 (50%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                  + +    I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P+   
Sbjct: 75  ENRQERSQGQNPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +     +  + +   +      G I+RT        E+  D EYL +LW +V
Sbjct: 135 IGISQKIDSEAERTQLRERLQALVPGEEKGGFIVRTQAEGAADEELSADLEYLRKLWASV 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A +  AP L++++  L +R +RD+       I V         +++ K+  PS    
Sbjct: 195 QMAARSQPAPTLLHQDLTLAQRVLRDMVGPYTGVIQVDSRSTTAALQEWGKVYTPSVVPR 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +R Y    P+F  + ++ ++       V L S GY+I++QTEAL ++DVN+G        
Sbjct: 255 IRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNF 314

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G++++DFIDME+  +  +V  +LK++L +DR R+ 
Sbjct: 315 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDSGHRDTVLAELKKALSRDRTRMT 374

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+  G +R+  +V   ILR +     Q+ 
Sbjct: 375 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCQARGNVRTARTVCYEILREILREARQFN 434

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                V     VV   L ++   +       G  I++ +    + + + I
Sbjct: 435 PKEFRVLAAQSVVDLFLEEESQHLAMLGDFVGKPISLEVEGSYSQEQYDI 484


>gi|297748936|gb|ADI51482.1| Ribonuclease E [Chlamydia trachomatis D-EC]
 gi|297749816|gb|ADI52494.1| Ribonuclease E [Chlamydia trachomatis D-LC]
          Length = 525

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 160/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 14  MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 63

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I               + +      DV            +
Sbjct: 64  ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 99

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +  A  A    E   ++                                I+E++K    +
Sbjct: 100 DSDADHAEPQPEETSKAP-------------------------------IEELLKLDSPV 128

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P+ R  LK++ R  E
Sbjct: 129 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 187

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA  S +   +  + + L+  W ++ E   +   P L+YEE +++K+A+ 
Sbjct: 188 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 247

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K    +++     Y++ K  +    P     +  Y D  P+F R  IE ++D   +
Sbjct: 248 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 307

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+    +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 308 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 367

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 368 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 427

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538
               C YC G   I++  S+ + I R +++ +      N+ +  H ++  Y+  ++    
Sbjct: 428 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 487

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++    +    + +     +    + 
Sbjct: 488 LIRLAKQLKAKLQINTSDSIHLNHYQ 513


>gi|94267017|ref|ZP_01290662.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
 gi|93452291|gb|EAT02932.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
          Length = 383

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 129/442 (29%), Positives = 210/442 (47%), Gaps = 59/442 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LI+A+   E R+ +L    + E   E   +K + GNIY  KV RV P +QAAF+D
Sbjct: 1   MSTELLINAT-PYEIRIALLEHGNLAEFHLEHPTEKGLVGNIYKGKVVRVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R GFL                                                   
Sbjct: 60  VGLERTGFLYV------------------------------------------------- 70

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                +   S E E+     A  +  S     +G        +      I +++   Q +
Sbjct: 71  ---DDVLVTSHEVEKRLDRCAKGEGSSPCCGDEGEML----LRRVPGQNIDDLLSEGQEI 123

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KE  G+KGA +T +++L  R  V MP T     ISRKI +   R+ L++    L 
Sbjct: 124 LVQVCKEPLGSKGARLTCHITLPCRNLVFMPMTEHIG-ISRKIEDEDVRRMLRQDIESLR 182

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RT     +  E++ D E+L+  W  +++ A  +  P LVYE+ ++  R +R
Sbjct: 183 PS-GTGFIVRTVAELASNEELEADMEFLLHTWSEIQDRAAGAPVPSLVYEDLDITLRVVR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++  ++ E++V     Y    +F++   P     V       PIF   GI+ +++   +
Sbjct: 242 DVFSPEVDEVVVDEPATYERVLEFVETFAPHLKGRVCLASGEPPIFESFGIDFEVNRALE 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L   GY++I  TEAL  IDVN+GR   ++ +E+T  +TN+EAA+EIA QLRLR++ 
Sbjct: 302 RKIWLRCGGYIVIEPTEALTVIDVNTGRYVGKNGLEETIFKTNMEAAKEIAYQLRLRNIG 361

Query: 421 GLIVVDFIDMEEKKNNRSVEKK 442
           G+I+VDFIDME++++  ++   
Sbjct: 362 GIIIVDFIDMEDEEHREAIFNT 383


>gi|317407637|gb|EFV87576.1| ribonuclease G [Achromobacter xylosoxidans C54]
          Length = 493

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 207/410 (50%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                  +      I++++   Q ++VQ+VK+  G KGA ++T +S+AGR  V +P+   
Sbjct: 81  ENRGERSQGLTPTPIEKLLFEGQTIMVQVVKDPLGTKGARLSTQISMAGRMLVYLPHDPH 140

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +     +  + +   +      G I+RT        E+  D EYL +LW +V
Sbjct: 141 IGISQKIDSESERIQLRERLQALMPSEEKGGFIVRTQAEGANDEELAADLEYLRKLWTSV 200

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A    AP L++++  L +R +RD+       I+V          ++ ++  PS    
Sbjct: 201 QAAARTQPAPALLHQDLTLAQRVLRDMVGPSTGAILVDSRTTTAAMLEWARVYTPSVVDR 260

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           ++ Y    P+F  + ++ ++       V L S GY+II+QTEAL ++DVN+G        
Sbjct: 261 IQHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 320

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G++++DFIDMEE+++  +V  +LK++L +DR R+ 
Sbjct: 321 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEEQEHRETVLAELKKALARDRTRMT 380

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+  G +R+  +V   ILR +     Q+ 
Sbjct: 381 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCESRGNVRTPRTVCYEILREILREARQFN 440

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +    DVV   L ++   +       G  +++ +    + + + I
Sbjct: 441 PKEFRILASQDVVDLFLEEESQHLAMLGDFVGKRVSLEVESTYSQEKYDI 490


>gi|297570188|ref|YP_003691532.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
 gi|296926103|gb|ADH86913.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
          Length = 701

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 177/488 (36%), Positives = 275/488 (56%), Gaps = 10/488 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   +     E+ +     G++      S+E     A       +   +S 
Sbjct: 217 PEECRLALVENGKVEGFYIESTSGAQCKGNIYKGRITSVEANLQAAFVDIGLPKNGFLSF 276

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           +       E       E  P    +   IQ+++K  + +LV++VK+  GNKG ++TTYLS
Sbjct: 277 SEIHPEYYE------KEVDPDTNWKSLKIQDMVKKGREVLVEVVKDATGNKGPSLTTYLS 330

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GR  VLMP  S    ISRKI +   R+ L+E+  GL +P G+G I+RTA    TK  +
Sbjct: 331 LPGRCLVLMPG-SDSAGISRKIDDEEQRRKLREMVEGLNIPEGIGYIIRTASQEITKTAL 389

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D  +L+ LW  +++   ++ AP L+Y+E N+I R +RD Y  DI EI+V  E+   + 
Sbjct: 390 SQDMRFLLNLWTEIKKKGQSTPAPALLYKEQNIIARFLRDHYTTDIKEILVDNEEAAEQV 449

Query: 322 KDFMKL--LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           K+F++L          V+ ++   PIF +  +E Q++ + Q  V L S G ++IN TEAL
Sbjct: 450 KNFLQLLPAAQRKKTTVKLHQGSQPIFHQYHVEKQIEQMFQPTVPLSSGGSIVINPTEAL 509

Query: 380 VSIDVNSGR-STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
           V+IDVNSGR ++++   E++    N+EAAEE+ARQLR+RDL GLIVVDFIDM    N R 
Sbjct: 510 VAIDVNSGRTASKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAANTRE 569

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           VEKK++E +KKD+A+V    IS FGL+++SRQ++ + +  S+ K C +C+G G IRS  +
Sbjct: 570 VEKKVRECMKKDKAKVDFSRISKFGLMQISRQKMAAPIQSSSYKTCPHCEGRGMIRSVEN 629

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
           + LS LR ++  L Q  A+ ++     DV  Y+ N+KR  ++E E  +   I +    ++
Sbjct: 630 MVLSYLRQIQTGLHQRKANKVLCRLPLDVAQYIFNKKREDLLELEKDYQAQIIIEADPQM 689

Query: 559 ADKLFYIE 566
                 IE
Sbjct: 690 LAAENRIE 697



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 50/76 (65%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           K+LI+    EE R+ ++ + +VE    ES    Q KGNIY  ++T VE +LQAAFVD G 
Sbjct: 209 KLLINTDEPEECRLALVENGKVEGFYIESTSGAQCKGNIYKGRITSVEANLQAAFVDIGL 268

Query: 64  NRHGFLPFLEIHPDYY 79
            ++GFL F EIHP+YY
Sbjct: 269 PKNGFLSFSEIHPEYY 284


>gi|328952216|ref|YP_004369550.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
 gi|328452540|gb|AEB08369.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
          Length = 515

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 186/510 (36%), Positives = 287/510 (56%), Gaps = 10/510 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++  + +   EA + +   G++      ++E     A      E +  +  
Sbjct: 8   PEEFRVAIVEDGKLEEFALEAASREQLKGNIYKGVISNIEPSLQAAFVHYGAERQGFLPI 67

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           +                      + +  IQEV+K  Q LLVQ++KEE  +KGA +TTY+S
Sbjct: 68  SEIHPEY---------FQPEAPQRSRPKIQEVLKKGQELLVQVIKEEIASKGAYLTTYIS 118

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GR+ VL+P   +   ISRKI     R+ LK + +   +  GMG+I+RTA  +  K E+
Sbjct: 119 LPGRFLVLLPGQEQIG-ISRKIEEEARRQELKALIKEFNLTHGMGLIVRTASEAAKKREL 177

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D++YL  +W  +++ A  S AP L+Y+E +L+ R IRD Y  DI+EI++   + + + 
Sbjct: 178 QKDYQYLNNIWQEIKKNAGQSPAPALIYKELDLVIRTIRDYYTADINEILIDDVETFTQI 237

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F K   P +  +++ Y++  PIF +  IE QL+ L+  +V L S G V+IN TEALV+
Sbjct: 238 KNFFKAFSPKHTNVLKLYKEKRPIFSKYQIEEQLERLYDNQVPLKSGGGVVINPTEALVA 297

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSGR      +E+TA +TNLEAA+EIARQLRLRDL GLIV+DFIDM+++K+ + VEK
Sbjct: 298 IDVNSGRCISPKEVEETAFKTNLEAAQEIARQLRLRDLGGLIVIDFIDMKDRKHRKEVEK 357

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +LK +LKK++ARV VG IS FGLLE+SRQR+R +V  S    C +C+G G I+S  +  L
Sbjct: 358 ELKAALKKEKARVTVGQISKFGLLELSRQRLRPAVQTSLYITCPHCQGRGLIKSVEASGL 417

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S++R +     +     +      +V  YLLN+KR  +V  E +F + + +     LA  
Sbjct: 418 SLIRKICHEAAKNDIQEVRALLPQEVTNYLLNKKRKELVSLEEKFQLRLFIASKEGLAWT 477

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
              +E          T   +    +    D
Sbjct: 478 ESRLEFIKRQIDQEKTKAALEGLIEERLKD 507



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 2/105 (1%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+AS  EE RV ++ D ++EE   E+  ++Q+KGNIY   ++ +EPSLQAAFV YG  
Sbjct: 1   MLINASDPEEFRVAIVEDGKLEEFALEAASREQLKGNIYKGVISNIEPSLQAAFVHYGAE 60

Query: 65  RHGFLPFLEIHPDYYQI--PFSDRQALLKESNIAQTDSEAVADDV 107
           R GFLP  EIHP+Y+Q   P   R  + +     Q     V  + 
Sbjct: 61  RQGFLPISEIHPEYFQPEAPQRSRPKIQEVLKKGQELLVQVIKEE 105


>gi|224131900|ref|XP_002321206.1| predicted protein [Populus trichocarpa]
 gi|222861979|gb|EEE99521.1| predicted protein [Populus trichocarpa]
          Length = 923

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 151/668 (22%), Positives = 283/668 (42%), Gaps = 63/668 (9%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI +S     R+ VL D ++ EL  E      +  ++Y+  VT++ P +  AFV+ G +
Sbjct: 261 ILISSSICTMQRIAVLEDEKLVELLLEPVKNTVLCDSVYIGVVTKLVPHMGGAFVNIGSS 320

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLK---------ESNIAQTDSEAVADDVTHGDV--T 113
           R   +   +    +   PF  R    +         E + A  ++E  + DV   D    
Sbjct: 321 RPSLMDIKQNREPFIFPPFCQRTKKGEVNGSVLKAFEEHPAAHENEHTSHDVEVIDDVSE 380

Query: 114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC---- 169
                 L       +   E +++  +S   + V+      G    D  +    +      
Sbjct: 381 FVFHSDLAPFLHDDHEEHEVDDDFDVSEVKENVNGSIVDYGEVDADFEQFLDGREHHLEG 440

Query: 170 ---------------------IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
                                    ++    ++VQ+VKE  G KG  VT Y  L  R+ +
Sbjct: 441 DTASLSHQDIKDAKHTLTSENKWSQVRKGTKVIVQVVKEGLGTKGPTVTAYPKLRSRFWI 500

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           L+    +   +S+K++     +   ++      P G G+ +RT  A  +  E+++D E L
Sbjct: 501 LITRCDRIG-VSKKVSGVERTR--LKVIAKTLQPPGFGLTVRTVAAGHSFEELQKDLEGL 557

Query: 269 MRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
           +  W ++ E A ++            P +++         ++D + + + +++V   + Y
Sbjct: 558 LSTWKSIMEHAKSAALAEDEGVEGAIPVVLHRAMGQTLSVVQDYFSEKVRKMMVDSPRTY 617

Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378
            E  ++++ + P     V  Y+   P+F    IE +++++    V L S G ++I QTEA
Sbjct: 618 HEVTNYLQEIAPDLCGRVELYDKRTPLFDEFKIEEEINNILSKRVPLSSGGSLVIEQTEA 677

Query: 379 LVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           LVSIDVN G     +    E   L  NL AA+ IAR+LRLRD+ G+IVVDFIDM ++ N 
Sbjct: 678 LVSIDVNGGHVMLRQRTSQEKAILDVNLAAAKRIARELRLRDIGGIIVVDFIDMADESNK 737

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           R V + +K ++++DR+ V+V  +SN GL+E++R+R+R SV    ++ CT C   G + + 
Sbjct: 738 RLVYEAVKRAVERDRSTVKVSELSNHGLMEITRKRVRPSVTFMISEPCTCCHATGRVEAL 797

Query: 497 SSVALSILRS-------VEEYLLQYTAH---NIIVHTHSDVVLYLLNQKRATIVEYEARF 546
            +    I +        +++             I+     +  YL + KR  +    +  
Sbjct: 798 ETSFSKIEQEICRSLATMDQKADHENPKTWPRFILRVDHHMCNYLTSGKRTRLAVLSSSL 857

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
            V I + +        F +++        N   +  + S     +   +       L+P+
Sbjct: 858 KVWILLKVARGFTRGAFEVKQF--TDDKTNKDQQQVAISVLRQAEARAKKSGGKVTLVPV 915

Query: 607 PKSESLED 614
            K ++   
Sbjct: 916 KKGKAGRK 923


>gi|148263327|ref|YP_001230033.1| ribonuclease [Geobacter uraniireducens Rf4]
 gi|146396827|gb|ABQ25460.1| RNAse E [Geobacter uraniireducens Rf4]
          Length = 792

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 199/545 (36%), Positives = 298/545 (54%), Gaps = 5/545 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++ ++ + D E   ++ T G+V       +E     A      ++   +  
Sbjct: 12  PEEARVAIVEDGHLVELDIEIAGNEQTRGNVYKGVVVRVEPGLQAAFVDIGLKKLGFLQM 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                 N +       +    +  R+  IQE+++  Q L+VQ+ K ER NKGAA+TTY+S
Sbjct: 72  GEIHPENWQ----WRDDVPEDQRHRRPRIQEILRRGQELIVQVEKGERDNKGAALTTYIS 127

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP  S    ISRK+ +  +RK LKE+  GLE+P G+G I+RT    RTK E+
Sbjct: 128 LPGRYMVLMPG-SDSAGISRKVESESERKKLKELVAGLEIPEGIGYIMRTEAVGRTKTEL 186

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D +YL++L+ ++RE         L+Y+E +L+ R IRD +  DI E++V  ++ Y++A
Sbjct: 187 TKDLQYLVKLYSSIREKGAEIKGAGLIYQESDLVIRTIRDYFNADIDEVLVDSKEVYKQA 246

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F K  MP   ++V+ +++  PIF R  +E Q+D +++ +V L S G + I  TEALVS
Sbjct: 247 RAFFKETMPKCEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVS 306

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+ST E  +EDTA +TNLEAA E ARQLRLRDL GLIV+DFIDM E+K+N  VEK
Sbjct: 307 IDVNSGKSTGERGVEDTAYKTNLEAAAEAARQLRLRDLGGLIVIDFIDMRERKHNAEVEK 366

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK +LK D+ARV VG IS FGLLEMSRQRI+ ++ +++T  C +C+G G ++S  ++AL
Sbjct: 367 TLKTALKGDKARVTVGRISQFGLLEMSRQRIKQTINQASTLECPHCEGRGKVKSVEAMAL 426

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S LR V     + T   +      +V  YLLN+K+  + + E  + + + V         
Sbjct: 427 SFLRKVHAAAAKGTVAEVRGGLPLEVAYYLLNRKKRELAQIETDYDIDVTVKGKPSFLLN 486

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              +E     + LV     V       +                  K +           
Sbjct: 487 QMEVELTKREKPLVEEHLPVKGAPAEEAEAHEPAAAVAGAVPGEEIKGKKKRRRGKKKPH 546

Query: 622 EESTG 626
            E   
Sbjct: 547 VEGEA 551



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ KMLI+A H EE RV ++ D  + ELD E    +Q +GN+Y   V RVEP LQAAFVD
Sbjct: 1  MSKKMLINAMHPEEARVAIVEDGHLVELDIEIAGNEQTRGNVYKGVVVRVEPGLQAAFVD 60

Query: 61 YGGNRHGFLPFLEIHPDYYQ 80
           G  + GFL   EIHP+ +Q
Sbjct: 61 IGLKKLGFLQMGEIHPENWQ 80


>gi|189219731|ref|YP_001940372.1| Ribonuclease G and E [Methylacidiphilum infernorum V4]
 gi|189186589|gb|ACD83774.1| Ribonuclease G and E [Methylacidiphilum infernorum V4]
          Length = 554

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 150/496 (30%), Positives = 257/496 (51%), Gaps = 5/496 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII-- 139
           P   R ALL E  + +   E  +      ++     +++++            + + +  
Sbjct: 58  PLERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIGIGKNAFLHF 117

Query: 140 -SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
             A    +    ++          +  R   I  +      ++VQ+ K   G KG  VTT
Sbjct: 118 WDAIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPIGTKGPRVTT 177

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
            ++LAGRY VLMP   +   ISRKI +P +R  L++I   L +P GMGVI+RT G  +  
Sbjct: 178 NITLAGRYLVLMPYNEQFG-ISRKIEDPKERARLRKILNELRIPEGMGVIIRTVGEGQKS 236

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
               RD   L++ W+ + +      AP L+Y E +LI+R +RD    D+ +I +  E   
Sbjct: 237 RYFVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEKIYIDDENEV 296

Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378
           +  KD +  +     + +  Y +P P+F +  IE Q+D+    +V LPS GY+II++TEA
Sbjct: 297 KRIKDLVAQISKRSQKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSGGYIIIDETEA 356

Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
           LV+IDVN+G++      ++  L+TN+EAA EI+RQLRLR++ GL+V+DFIDM+ +++   
Sbjct: 357 LVAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFIDMKSRRDQHL 416

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           V +KLKE ++KDRA++ +  IS+FGL+EM+RQR++ S+  S    C +C G G ++S  +
Sbjct: 417 VFEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCHGRGMVKSPET 476

Query: 499 VALSILRSVEEYLL-QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
           +++ I R++   +        + V  +  V+  L ++    +V+ E R    +       
Sbjct: 477 MSIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQGKLYFRTDPR 536

Query: 558 LADKLFYIEKGSPVQA 573
           +  + F I      + 
Sbjct: 537 INYEEFKIVNALTGED 552


>gi|326795040|ref|YP_004312860.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1]
 gi|326545804|gb|ADZ91024.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1]
          Length = 484

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 122/565 (21%), Positives = 225/565 (39%), Gaps = 84/565 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  +LI+ +   E RV ++ +  ++E+  E   +K I GNIY  KV RV P +QAAFVD
Sbjct: 1   MSEDVLINVT-PMEIRVALVENGVLQEVYIERSSRKGIVGNIYQGKVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  F+   EI         +DR A+          S+ + D +  G   +      
Sbjct: 60  IGLERAAFIHVSEI---------ADRDAV--------NPSDQIGDYLREGQSLVVQVTKD 102

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  +      S         ++V   +    E   ++              + L
Sbjct: 103 PISTKGARLTTHLSIPSRYLVYMPDQAHVGVSQRIEDESERERL-------------KSL 149

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           + + + +     G  + T    AG                       +  +  +    L 
Sbjct: 150 VSKALTDADETSGYILRTAAEKAG---------------------EEEILSDIKFLTRLW 188

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +    A +      I  D    +R   ++                 +L    I+
Sbjct: 189 QSVKKRMKSAKAPS-----VIYEDLPLHLRTMRDLI----------------SLTTEKIK 227

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               ++ +++    +    E  + ++              +             +     
Sbjct: 228 IDSKENFAKLRSFADDFIPELSNHIEYYPGERPIFDLYSVEDE-----------IQRALD 276

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V+L S GY+++ QTE++ +IDVN+G       +E+T  +TNLEAA  I RQLRLR+L 
Sbjct: 277 RKVSLKSGGYLLVEQTESMTTIDVNTGAYVGTRNLEETIYKTNLEAATAIGRQLRLRNLG 336

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++++ R V + L++ L+ D A+ ++  +S  GL+EM+R+R R S+ +  
Sbjct: 337 GIIIIDFIDMEDEEHKRQVLRMLEKILEVDHAKTKITGVSELGLVEMTRKRTRESLGQVL 396

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C+G+G +++  +V   + R +      Y +    V   S VV   L+++   + 
Sbjct: 397 CEPCRACRGSGLVKTPETVCYEVFREILRADRAYNSQTYTVLASSSVVERFLDEESVAVA 456

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E EA  G +I   +        + +
Sbjct: 457 ELEAFIGKTIRFQVDPVYTQDQYDV 481


>gi|329943150|ref|ZP_08291924.1| ribonuclease, Rne/Rng family domain protein [Chlamydophila psittaci
           Cal10]
 gi|332287732|ref|YP_004422633.1| ribonuclease [Chlamydophila psittaci 6BC]
 gi|325507347|gb|ADZ18985.1| ribonuclease [Chlamydophila psittaci 6BC]
 gi|328814697|gb|EGF84687.1| ribonuclease, Rne/Rng family domain protein [Chlamydophila psittaci
           Cal10]
 gi|328914986|gb|AEB55819.1| ribonuclease G [Chlamydophila psittaci 6BC]
          Length = 510

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 164/566 (28%), Positives = 286/566 (50%), Gaps = 70/566 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N +L++    +E R   L++ ++ +L  E +  +Q+KGNIY  +VT +          
Sbjct: 1   MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
               R+       I   +  I                       D+  +G + I +    
Sbjct: 51  ----RN-------IQSAFINI-----------------------DERENGFIHISDV--- 73

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                        + E +   + DV++  ++ K  +P            I+E++K    +
Sbjct: 74  --------LENSKKFEQMFDMDFDVLNKEDNEKPEAP------------IEELLKLDSPV 113

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE  G KGA +T+ +S+ GRY VL+PN+     +SRKI +P  R  LK++ R  E
Sbjct: 114 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFE 172

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           +P  MG+I RTA    +   +  +   L+  W  + E   ++  P L+YEE +++K+A+ 
Sbjct: 173 MPQDMGLICRTASVLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVI 232

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K+   +++     Y++ K  +K   P+ +  +  Y D  P+F R  IE ++D   +
Sbjct: 233 TCIDKNYKRLLIDDYSTYQKCKRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATK 292

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419
            ++ L S GY+  ++TEA+ +IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++
Sbjct: 293 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 352

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            GL+++DFIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++
Sbjct: 353 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 412

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-KRAT 538
               C YC G   I++  SV + I R +++ +      ++ +  H ++  ++  +     
Sbjct: 413 LFTTCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDE 472

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           ++         + +     L    + 
Sbjct: 473 LIRLAKHLKAKLQINTSDSLHLNHYQ 498


>gi|89900867|ref|YP_523338.1| ribonuclease [Rhodoferax ferrireducens T118]
 gi|89345604|gb|ABD69807.1| RNAse G [Rhodoferax ferrireducens T118]
          Length = 491

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/422 (29%), Positives = 215/422 (50%), Gaps = 2/422 (0%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V         G P  + +  + Q  I++ +   Q+LLVQ++K+  G KGA ++T +S+A
Sbjct: 69  HVADVWHRQPEGEPPSMVRNTQPQIPIEKQVFEGQVLLVQVIKDPIGTKGARLSTQISIA 128

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           GR  V +P         +   N  D   L+   + L    G G ILRT G   + +E+  
Sbjct: 129 GRMLVFLPQDDHVGVSQKIPQNQRDE--LRTRLQQLVGTEGGGFILRTNGEDASDLELSD 186

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           D  YL + W  ++  ++      L++++ NL++R +RDL C++   I V   + +   K 
Sbjct: 187 DIGYLRKAWARIKGASVRLPPLSLLHQDLNLLQRVLRDLVCENTQTIKVDSREQFEALKA 246

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           F    MP+ A  ++ Y+   PIF    I+ ++       V L S GY+I++QTEAL ++D
Sbjct: 247 FGLEFMPAAAEKLQHYKGERPIFDLYAIDEEIAKALGRRVDLKSGGYLIVDQTEALTTVD 306

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VN+G        +DT  +TNLEAA+ IARQLRLR+L G+I+VDFIDM  + +  +V  ++
Sbjct: 307 VNTGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVREDHREAVLAEI 366

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           ++ L +DR +   G  S  GL+EM+R+R R S+     + C  C+G G +++  +VA +I
Sbjct: 367 RKQLSRDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCEGKGIVKTARTVAYNI 426

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
            R +     Q+      V     V+   L+++   +       G  +++     +  + +
Sbjct: 427 FREILREARQFNPREFRVIASPKVIELFLDEESQHLAGLSEFIGKPVSLQSESAMGQEQY 486

Query: 564 YI 565
            I
Sbjct: 487 DI 488



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV ++ +  ++EL  E   ++ + GN+YL KV RV P +Q+AF+D
Sbjct: 1  MQEDILINWS-PQETRVAIVENGALQELLVERTLERGLVGNVYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 IGLERAAFLHVADV 73


>gi|293604463|ref|ZP_06686869.1| cytoplasmic axial filament protein [Achromobacter piechaudii ATCC
           43553]
 gi|292817142|gb|EFF76217.1| cytoplasmic axial filament protein [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/410 (28%), Positives = 208/410 (50%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                  +      I++++   Q ++VQ+VK+  G KGA ++T +S+AGR  V +P+   
Sbjct: 81  ENRGERSQGLTPTPIEKLLFEGQTIMVQVVKDPLGTKGARLSTQISMAGRMLVYLPHDPH 140

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +     +  + +   +      G I+RT        E+  D EYL +LW +V
Sbjct: 141 IGISQKIDSESERIQLRERLQALMPAEEKGGFIVRTQAEGANDDELTADLEYLRKLWTSV 200

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A    AP L++++  L +R +RD+    I  I+V          ++ ++  PS    
Sbjct: 201 QAAARTQPAPALLHQDLTLAQRVLRDMVGPSIGAILVDSRTTSAAMLEWARIYTPSVVDR 260

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           ++ Y    P+F  + ++ ++       V L S GY+II+QTEAL ++DVN+G        
Sbjct: 261 IKHYSGDRPLFDTANVDDEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 320

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G++++DFIDMEE+++  +V  +LK++L +DR R+ 
Sbjct: 321 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEEQEHRDTVLAELKKALSRDRTRMT 380

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+  G +R+  +V   ILR +     Q+ 
Sbjct: 381 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCESRGNVRTPRTVCYEILREILREARQFN 440

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +    DVV   L ++   +       G  +++ +    + + + I
Sbjct: 441 PKEFRILASQDVVDLFLEEESQHLAMLGDFVGKRVSLEVESTYSQEKYDI 490


>gi|153808080|ref|ZP_01960748.1| hypothetical protein BACCAC_02366 [Bacteroides caccae ATCC 43185]
 gi|149128983|gb|EDM20199.1| hypothetical protein BACCAC_02366 [Bacteroides caccae ATCC 43185]
          Length = 484

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 142/538 (26%), Positives = 248/538 (46%), Gaps = 61/538 (11%)

Query: 43  YLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEA 102
           YL ++ ++ P L A FVD G  +  FL +L++ P +     +  +  +K++   +    +
Sbjct: 2   YLGRIKKLMPGLNACFVDVGYEKDAFLHYLDLGPQF-----NSLEKFIKQTLSDKKKLTS 56

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162
           ++      D+                                                  
Sbjct: 57  ISKATLLPDLD------------------------------------------------- 67

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
              +   +   +K  Q ++VQIVKE    KG  +T+ +S AGRY VL+P   K     + 
Sbjct: 68  ---KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKI 124

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            ++    +   +       P   GVI+RT    +   E+  +   L++ W++       +
Sbjct: 125 KSSEERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELRVLVKHWEDAMAKVQKA 182

Query: 283 -VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
              P L+YEE +     +RDL+      I V+ E  Y E KD++ L+ P  A IV+ Y+ 
Sbjct: 183 TKYPTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVSLIAPDRANIVKLYKG 242

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TAL 400
             PI+   GI  Q+ S     V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL
Sbjct: 243 QLPIYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNAL 302

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           + NL AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S
Sbjct: 303 EVNLGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLS 362

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
            FGL++++RQR+R ++  +TT++C  C G G I+S      ++   ++  + +       
Sbjct: 363 KFGLMQITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFS 422

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           +H H  V  Y+     +   +++ ++G  I V+   +LA   +        +  +   
Sbjct: 423 LHVHPYVAAYINQGLVSLKRKWQMKYGFGIKVIPSQKLAFLQYVFYDTHGEEIDMKEE 480


>gi|315633905|ref|ZP_07889194.1| ribonuclease G [Aggregatibacter segnis ATCC 33393]
 gi|315477155|gb|EFU67898.1| ribonuclease G [Aggregatibacter segnis ATCC 33393]
          Length = 491

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 117/414 (28%), Positives = 201/414 (48%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                E+  +K      I +++   Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVEESEQKQFVVKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    T++++++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERNR--LKELTLPLCDELGGFIIRTAAEGATELDLQQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD     +  I +     + E K F +  +P+ 
Sbjct: 195 RKVLERRAKYPTRSMLYGELALTQRILRDFIGGKLDRIHIDSRLCFNEVKQFTEEFIPNL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    P+F    +E  +       V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 TDKLILYTGNQPLFDVYSVEKGIHHALDRRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+ +++   V + L+++L +D  
Sbjct: 315 RNLEETIFNTNIEATKTIAQQLQLRNLGGMIIIDFIDMQSEEHRNRVLESLQDALSRDPV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C+G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCCECPTCQGRGRVKTVETVCYEIMREIIRVHH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   +V+    V  YL+N++    + E E   G  I V        + F +
Sbjct: 435 LFASEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQVKTEPFYTQEQFDV 488


>gi|310823547|ref|YP_003955905.1| Ribonuclease, Rne/Rng family [Stigmatella aurantiaca DW4/3-1]
 gi|309396619|gb|ADO74078.1| Ribonuclease, Rne/Rng family [Stigmatella aurantiaca DW4/3-1]
          Length = 853

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 153/584 (26%), Positives = 257/584 (44%), Gaps = 7/584 (1%)

Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186
                   E+     + D      +      +D   K ++   I++++K  Q ++VQI K
Sbjct: 248 EAREPRHREKDRDGRDKDKSRRPREEHSRREKDEKSKVRKSSRIEDLLKVGQEVVVQISK 307

Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246
           +  G KGA +T+++S+ GR+ V MP       ISR+I+N  +RK L+EI   L  P G G
Sbjct: 308 DPIGTKGARLTSHISIPGRHLVFMPTVDHVG-ISRRISNEKERKRLREIVDRLRPP-GTG 365

Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
            I+RT   +  + +++ D  +L+ +W+ V         P L++ + +LI RA RDL+  D
Sbjct: 366 FIVRTVAENVPQEKLETDIRFLIEVWNQVVRRNEKRGGPGLLHPDLDLILRATRDLFAHD 425

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
           + +++V   + Y     F+    P     V  +E   P+F   GIE ++    Q +V L 
Sbjct: 426 VEKLVVDDREEYERILAFVTAQDPLLKDRVVLHEGDEPVFDAYGIEQEMHRATQRKVWLK 485

Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
           S GY+II+Q EAL +IDVNSGR   +  +E+T  + N+EAA+EI  QLRLR++ G+I+ D
Sbjct: 486 SGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICD 545

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDME+ +N   V K L+E+L +D+A+  V  IS  GL+EM+R+R+R S+     + C Y
Sbjct: 546 FIDMEKAQNRDKVFKSLQEALGRDKAKTNVLRISELGLVEMTRKRVRESIGRVLHEDCPY 605

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G G++++ ++V   I R +      Y    ++++  ++V   L  ++R  +     R+
Sbjct: 606 CDGRGFVKTATTVTYEIFREIRREAPGYKDSTLVINCSAEVARQLQGEERQELRHLMDRY 665

Query: 547 GVSINVVIGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---- 601
             SI V        + + I  +                D +     +       +     
Sbjct: 666 NKSIQVKAQQNYHREQYDIYGRSGMGPEHKVASSPGSGDGELAMQRRPENGGHGERYRQE 725

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                       +  D     +      +  R    R                  +N   
Sbjct: 726 QGRRGGGRGDRNERGDRGERGDRNERGDRGERGGGERGGGERGGGERGDRGERGERNDRG 785

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
           D  +         N      G               +TPE  SS
Sbjct: 786 DRREGRRPDRGDRNRGGERRGDERRGGESQRPPQAAATPEPSSS 829



 Score = 51.9 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 54  LQAAFVDYGGNRHGFLPFLEIH--PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111
           +QAAFVD G  +  FL   ++   PD+ +  F   +   ++     T+SEA A +   GD
Sbjct: 1   MQAAFVDIGLEKAAFLYVSDVVYDPDFARAQFELTEGEHEDFPEVPTESEAEAAEAAAGD 60

Query: 112 VTIPNDHSLE-EVAPIANFSQETEEESIISANNDVVSNV 149
                D  LE EV  +A       +    +   + V+ V
Sbjct: 61  TPAGPDTELELEVQELAPGELPPPQGEPPALPPEAVATV 99


>gi|225024265|ref|ZP_03713457.1| hypothetical protein EIKCOROL_01138 [Eikenella corrodens ATCC
           23834]
 gi|224943290|gb|EEG24499.1| hypothetical protein EIKCOROL_01138 [Eikenella corrodens ATCC
           23834]
          Length = 532

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/406 (27%), Positives = 217/406 (53%), Gaps = 1/406 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +K +    I+ ++   Q +LVQ++K+   +KGA ++T +SLAGR+ V +P  +    I
Sbjct: 125 QRQKPEETQRIEHMLFEGQTILVQVIKDPINSKGARLSTQISLAGRFLVYLPQDNHIG-I 183

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           S++I +  +R  L+   + L      G I+RT+  +    E++ D  YL +LW ++   +
Sbjct: 184 SQRIEDEEERNELRTRLKALLPENAGGYIIRTSAENARDEELQADIGYLAKLWQDILARS 243

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             S A  ++YE+  L  R +RD++  +  +I V     YR  ++F +  +      ++ Y
Sbjct: 244 KTSPAETMLYEDLPLSLRVLRDMFNSNTQKIFVDSANNYRLMQEFAQQYVQGAVERIQHY 303

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E +++   +  V L   GY+II  TEA+ +IDVN+G        ++T 
Sbjct: 304 QGEKPLFELYHVEQEINQSLKPRVDLNFGGYLIIESTEAMTTIDVNTGGFVGARNFDETI 363

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNL+A   IAR+LRLR+L G+I+VDFIDM  +++ ++V  ++ ++L+ DR RV +   
Sbjct: 364 FKTNLDACHAIARELRLRNLGGMIIVDFIDMVSEEHRQAVLGEMAKALRFDRTRVTLNGF 423

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++     + C  C+G GY+++  +V   I R +     ++ A   
Sbjct: 424 TSLGLVELTRKRSRENLNHILCESCPTCQGRGYLKTAQTVCYEIQREIVRESRRFDAREF 483

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V+   L+++  ++       G  +++++      + F I
Sbjct: 484 RILAAPAVIDLFLDEESQSLALLIDFIGKPVSLMVESSYTQEQFDI 529


>gi|317051684|ref|YP_004112800.1| ribonuclease, Rne/Rng family [Desulfurispirillum indicum S5]
 gi|316946768|gb|ADU66244.1| ribonuclease, Rne/Rng family [Desulfurispirillum indicum S5]
          Length = 501

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 249/565 (44%), Gaps = 67/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+  + I+     E+RV  + +  + E+  E + +  I GNIY   V++V P +QAAFVD
Sbjct: 1   MSTTIFINH-RSYESRVAYMENGELSEILIERKREGGIVGNIYKGVVSKVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++           R+ L           +A   D+  GD       S 
Sbjct: 60  IGLEKAAFLYVADLG----------REQL---------GVDAALPDLEDGDANGEKARSA 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E            E    +S               +          ++ +     +   +
Sbjct: 101 EYPPIDEILRLGDELIVQVSKEPISTKG-------ARITSYITLPGRHLVLMPTIDHIGI 153

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E+  ++  ++   L  AG   +     ++    +R+  +    ++       + 
Sbjct: 154 SRRIASEQERHRLRSILNDLKPAGMGLI-----ARTVAENRQKEDFASDQSFLTNLWDV- 207

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I++ AG  +    + +D +                           LI + +R
Sbjct: 208 -------IMKKAGEVKAPALLYQDLD---------------------------LILKTMR 233

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+ ++++ + +  E  Y   ++F   L+P     +  Y    P+F    IEV+L+ L  
Sbjct: 234 DLFTREVATLYIDDEAEYLRCREFASRLLPHLFDRIELYHGKEPLFDAFNIEVELNKLSN 293

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+Q EAL +IDVN+GR   +  +EDT LQTNLEAA EI  QLRLR++ 
Sbjct: 294 KKVWLKSGGYIVIDQAEALTAIDVNTGRYVGKKNLEDTILQTNLEAAREICYQLRLRNIG 353

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDMEE++N   + + L+ +LKKDRA+  V  +S  GL+EM+R+R+R S+    
Sbjct: 354 GIIIIDFIDMEEEENRLKLLQALEVNLKKDRAKTNVLPVSELGLVEMTRKRVRDSIGRVL 413

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G G+++S  +V   I R ++     Y    + +  ++DV   + +++   + 
Sbjct: 414 YESCHYCEGRGFLKSPHTVCYDIFREIQRIAGIYKGKKLYIEAYADVADIMFSEEAEYVE 473

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           + E    V + +        + + I
Sbjct: 474 KLEEDCCVKLVIKSNPHFHQEHYEI 498


>gi|251792072|ref|YP_003006792.1| ribonuclease G [Aggregatibacter aphrophilus NJ8700]
 gi|247533459|gb|ACS96705.1| ribonuclease, Rne/Rng family [Aggregatibacter aphrophilus NJ8700]
          Length = 491

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/414 (29%), Positives = 207/414 (50%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                E+  +K      I +++   Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVEESEQKQFVVKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+A  L    G G I+RTA    +++++++D ++L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR-LKELALPLCDELG-GFIIRTAAEGASELDLQQDADFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD     +  I V     + E K F +  +P+ 
Sbjct: 195 RKVLERRAKYPTRSMLYGELALTQRILRDFIGAKLDRIHVDSRLCFNEVKQFTEEFIPNL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    P+F    +E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 TDKLILYTGNQPLFDVYSVETAIHNALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+ + +   V + L+E+L  D  
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGMIIIDFIDMQNELHRTRVLESLEEALASDPV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C+G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHILCCECPTCEGRGRVKTVETVCYEIMREIIRVHH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++    + E E   G  I +        + F +
Sbjct: 435 LFSSEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQIKTEPFYTQEQFDV 488


>gi|158522450|ref|YP_001530320.1| ribonuclease [Desulfococcus oleovorans Hxd3]
 gi|158511276|gb|ABW68243.1| ribonuclease, Rne/Rng family [Desulfococcus oleovorans Hxd3]
          Length = 499

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 183/396 (46%), Positives = 262/396 (66%), Gaps = 1/396 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++IK  Q +LVQ+VK+   +KGAA+TT+LS+ GR+ VLMP  S  + +S++I +  +R
Sbjct: 88  IRDLIKPGQEMLVQVVKDPIMHKGAALTTFLSIPGRFCVLMPG-SVTKGVSKQIEDEEER 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           K LKEI  GL VP   GVILRTA     K  I +D  YLMRLW  +++  +N  AP  ++
Sbjct: 147 KRLKEIVSGLRVPENFGVILRTAAKGAAKTVIAKDLSYLMRLWKTIKKEGMNQKAPAAIH 206

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           +E +   RAIRD    DI EI++     ++E KDF+ L+ P +A+IVR Y+   PIF + 
Sbjct: 207 KERDFAVRAIRDYLTADIQEILIDEPAVHQEVKDFVALVSPKHAKIVRLYQGAKPIFTKH 266

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E Q++S+ +  V LPS G +++ QTEALVSIDVNSG+S ++H IE+TALQTNLEAAEE
Sbjct: 267 ELESQIESIFENRVQLPSGGSIVLTQTEALVSIDVNSGKSRQKHSIEETALQTNLEAAEE 326

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLRD+ GLIV+DFIDM+ +KNN +VE+ LK  +K+D+AR  VG IS FGLLEMSR
Sbjct: 327 IARQLRLRDMGGLIVIDFIDMKPRKNNAAVERALKAHVKEDKARTDVGKISKFGLLEMSR 386

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           QR+R S+  S+   C +C G GY+ +   + +++LR +    L++    +     + V  
Sbjct: 387 QRLRQSIETSSMVTCGHCGGRGYVMATEKLGINVLRRLRLESLKHRGVAVTATVPAVVAD 446

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           YLLN+KR  ++E EAR  ++I +     +      I
Sbjct: 447 YLLNKKRTELLELEARRDLAITITGDPAMHLGESDI 482



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 53/85 (62%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +K+LI+A   EE R+  ++DNR+ E   E+  +   K NIY   V RVEPSLQA FVD
Sbjct: 1  MTDKILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVD 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSD 85
          YG  RHGFL   +IH DY+Q    D
Sbjct: 61 YGEERHGFLQKHDIHTDYFQDSKVD 85


>gi|326336369|ref|ZP_08202540.1| ribonuclease G [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691543|gb|EGD33511.1| ribonuclease G [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 513

 Score =  278 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 149/566 (26%), Positives = 259/566 (45%), Gaps = 64/566 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S   +    +L++ R+ EL  E +      G+I LAK+ +    L AAFV+
Sbjct: 1   MTKELII-RSGASDVDFALLKNGRLIELHKEEDSSGIAVGDIMLAKIHKPIQGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P       +     +KE +  +    ++ D     D+        
Sbjct: 60  VGYEKDAFLHYHDLGPQ-----LASLLKFIKEVSSGKLKDYSLKDFKQEPDIN------- 107

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                                        +   I +V+K  Q +
Sbjct: 108 ---------------------------------------------KNGAISDVLKAGQPI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +++ LS+AGRY VL+P + +  +IS+KI N  +++ L+ I + ++
Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYLVLVPFSER-ISISQKIENKTEKERLRRIVQSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G GVI+RT    +   ++ RD +   + W  + +       P  +  E N     +R
Sbjct: 182 PK-GFGVIIRTVAQDKKVADLDRDLQNSFQRWVQMCKKISQGTFPSKILSEMNRTGALLR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I V  E  Y + +D+++ + P    IV+ Y+   PIF +  IE Q+ +   
Sbjct: 241 DMFDSSFTGIHVDNEALYNQIRDYLQEIAPEQVNIVKLYKSSVPIFEKFHIERQIKTGLG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEAL  IDVNSG  + +    E TA + NL AA EIARQLRLRD+
Sbjct: 301 RTVSMTKGAYLVIEHTEALHVIDVNSGNHSNKAENQETTAFEVNLIAATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM   +N + +   L+E +K DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMSNGENRQKLFDALREEMKDDRAKHKILPPSKFGLIQITRQRVRPEINIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRAT 538
           T +        G + +   +   I  ++EE + Q      I ++ H  +  YL     + 
Sbjct: 421 TKEENPSK--LGEVDAPIVLIEQITTTLEEIIYQSNYNGRITLNIHPFIAAYLTKGIFSI 478

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             ++  ++   I ++     +   + 
Sbjct: 479 RFKWFLKYQRWIRILPRDAYSYLEYR 504


>gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075644|gb|ADJ65043.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum
           seropedicae SmR1]
          Length = 487

 Score =  278 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 203/397 (51%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I++++ + Q + VQ++K+  G KGA ++T +S+AGR  V +P         R       
Sbjct: 88  PIEKLLHDGQSITVQVIKDPIGTKGARLSTQISIAGRMLVYLPQDKHIGISQRIENEAER 147

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
                ++   L      G I+RT     +  +++ D EYL + W  + +    + AP L+
Sbjct: 148 ELLRSKVQALLPPEEKGGFIIRTMAEDASDADLQMDVEYLRKTWATIVKQGKTNPAPTLL 207

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           +++ +L +R +RD      + I V   + +   ++F  +  PS    +  Y    P+F  
Sbjct: 208 HQDLSLAQRVLRDFVGDHTATIQVDSRENFHMLQEFGAIYTPSVLTKLTHYRGERPLFDL 267

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            G+E +++      V L S GY+I++QTEA+ +IDVN+G        +DT  +TNLEAA 
Sbjct: 268 YGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAH 327

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            IARQLRLR+L G+I++DFIDME  ++ ++V  +L ++L++DR ++ V   S  GL+EM+
Sbjct: 328 AIARQLRLRNLGGIIILDFIDMESTEHRQAVLAELGKALQRDRTKISVSGFSTLGLVEMT 387

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+R R S+     + C  CKG G +++  +V   ILR V     Q+      +     VV
Sbjct: 388 RKRTRESLAHILCETCPACKGRGQVKTPRTVCYEILREVMREAKQFNPREFRILASQVVV 447

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              L ++   +       G  I++ +  +   + + I
Sbjct: 448 DMFLEEESQHLAMLGDFIGKPISLQVQSDYQQEQYDI 484


>gi|311745200|ref|ZP_07718985.1| ribonuclease G [Algoriphagus sp. PR1]
 gi|126577723|gb|EAZ81943.1| ribonuclease G [Algoriphagus sp. PR1]
          Length = 523

 Score =  278 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 157/575 (27%), Positives = 257/575 (44%), Gaps = 61/575 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++LID++    +R+ +L+D  + EL  E    +   G+IYL  V ++   L A    
Sbjct: 1   MSTELLIDSAQSG-SRIALLQDKSLVELHSEGMDNQFKVGDIYLGTVRKIVNGLNA---- 55

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F+++                                    D  +      
Sbjct: 56  ---------AFIDVG--------------------------------YEKDAFLHYQDLG 74

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                +  F++     +  S N     NV ++                 I  ++     +
Sbjct: 75  PNFNSLMKFTKMVRNNNYSSYNLKGFENVPEIDKIGK------------ISSILSKNNQV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE    KG  ++  LSL GRY VL+P +       +  ++   ++ L+       
Sbjct: 123 LVQVVKEPISTKGPRLSCELSLPGRYLVLVPFSDSVNVSKKIRSSDERKRLLR--LINSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            PA  GVI+RT    ++  E+ +D   L+  W+   +  L + +   V  E ++    +R
Sbjct: 181 KPANFGVIIRTVAEGQSVTELDKDLRNLLNNWEEGMQKLLKAKSRDKVIGEMSMASSLVR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL  +    I V  E  Y + + +++ + P   +IVR Y     +F   GIE Q+ SL  
Sbjct: 241 DLLNESFDAITVEEESTYDQIRSYIRSIAPEKEKIVRLYNGKAKLFENFGIEKQIKSLFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V+LP  GYVII  TEAL  IDVNSG +S +E   E TAL+TNL AA+EIARQLRLRD+
Sbjct: 301 QTVSLPQGGYVIIEHTEALHVIDVNSGNKSNQESDQESTALKTNLVAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM + +N + + + +KE LK DR++  V  +S FGL++++RQR+R  V   
Sbjct: 361 GGIIVVDFIDMRKAENKKVIYEAMKEELKMDRSKHTVLPLSKFGLMQITRQRVRPEVNIV 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T + C  C G G I++   VA  + + +E          I +  H  +  Y      +  
Sbjct: 421 TKETCPACNGTGKIQASILVADKLEKDLEHIATIQNVSQIHIGLHPYLHAYFTTGIISRR 480

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           V++  ++   I ++    L    +  +  S  +  
Sbjct: 481 VKWFFKYYKWIKLIKDSSLPVTEYRFQDESGEEIE 515


>gi|7160671|emb|CAB76425.1| endoribonuclease E [Arabidopsis thaliana]
          Length = 575

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 135/558 (24%), Positives = 246/558 (44%), Gaps = 59/558 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 4   ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 63

Query: 65  RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112
           RH F+   +I  +   +   PF D            L      A  + E  + D     +
Sbjct: 64  RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 120

Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145
              + +   E                                     +E   I       
Sbjct: 121 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 180

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             +++     +        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L  R
Sbjct: 181 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 238

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D 
Sbjct: 239 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 295

Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + L+  W N+ + A ++            P L++         ++D +   + +++V   
Sbjct: 296 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 355

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++I Q
Sbjct: 356 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 415

Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEALVSIDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++
Sbjct: 416 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 475

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G +
Sbjct: 476 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 535

Query: 494 RSQSSVALSILRSVEEYL 511
            +  +    I + +   L
Sbjct: 536 EALETTFSKIEQEICRQL 553


>gi|192362515|ref|YP_001983272.1| ribonuclease, Rne/Rng family [Cellvibrio japonicus Ueda107]
 gi|190688680|gb|ACE86358.1| ribonuclease, Rne/Rng family [Cellvibrio japonicus Ueda107]
          Length = 489

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 126/412 (30%), Positives = 213/412 (51%), Gaps = 3/412 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
            P +   +      I+ +++    LLVQ+ K+    KGA +TT+L+L+ RY V MPN+S 
Sbjct: 76  EPPEGELRRSEVPDIRSLVREGDTLLVQVAKDPISTKGARLTTHLTLSSRYLVYMPNSSH 135

Query: 216 GETISRKITNPVDRKNLKEIARGL--EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
               +R    P   + L++I   +  E     G I+RT      +  I  D  +L +LW 
Sbjct: 136 IGVSTRIEDEPERER-LRQIVERVVAEESIPGGFIVRTVAEGADEAAILADIPFLQQLWT 194

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           ++     +   P  ++ +  L  RA+RD+    I  + V     +++ +DF     P   
Sbjct: 195 DLSARLPSLGVPAELHRDMPLYLRALRDMARAPIDRVRVDSRLTWQQMQDFASKYAPQLV 254

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
            ++  Y    P+    G+E +L    +T V L S GY+II QTEA+ ++DVN+G      
Sbjct: 255 DLIELYSGERPLLELYGVEEELRRALETRVPLKSNGYLIIEQTEAMTTVDVNTGAFVGHR 314

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            +E+T  +TNLEAA  IARQLRLR+L G+I++DFIDM++ ++ R V + L+++L+KD A+
Sbjct: 315 NLEETIFKTNLEAATAIARQLRLRNLGGIIILDFIDMKDPEHQRQVLRTLEKALEKDLAK 374

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
            ++  +S  GL+EM+R+R R S+ +   + C  C+G G ++S  +V   I R V      
Sbjct: 375 TRITGVSELGLVEMARKRTRESLGQLLCEPCPVCQGRGQVKSAETVCYEIFREVLRMARA 434

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           Y     +V     VV  LL+++ + + + EA    +I   +      + + I
Sbjct: 435 YDNDKFLVLASQVVVDRLLDEEASYVADLEAFIQRTIEFRVEALFHQEQYDI 486


>gi|311105286|ref|YP_003978139.1| ribonuclease G [Achromobacter xylosoxidans A8]
 gi|310759975|gb|ADP15424.1| ribonuclease G [Achromobacter xylosoxidans A8]
          Length = 493

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 115/410 (28%), Positives = 206/410 (50%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                  +      I++++   Q ++VQ+VK+  G KGA ++T +S+AGR  V +P+   
Sbjct: 81  ENRGERSQGLTPTPIEKLLFEGQTIMVQVVKDPLGTKGARLSTQISMAGRMLVYLPHDPH 140

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +        +  + +   +      G I+RT        E+  D EYL +LW +V
Sbjct: 141 IGISQKIDDESERIQLRERLQALMPAEEKGGFIVRTQAEGANDEELTADLEYLRKLWTSV 200

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A    AP L++++  L +R +RD+   +   I+V          ++ ++  PS    
Sbjct: 201 QAAARTQPAPALLHQDLTLAQRVLRDMVGPNTGAILVDSRTTSAAMLEWARVYTPSVVDR 260

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           ++ Y    P+F  + ++ ++       V L S GY+II+QTEAL ++DVN+G        
Sbjct: 261 IQHYSGERPLFDTANVDDEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 320

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G++++DFIDMEE+++  +V  +LK++L +DR R+ 
Sbjct: 321 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEEQEHRETVLAELKKALSRDRTRMT 380

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+  G +R+  +V   ILR +     Q+ 
Sbjct: 381 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCEARGNVRTPRTVCYEILREILREARQFN 440

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +    +VV   L ++   +          I++ +    + + + I
Sbjct: 441 PKEFRILASQEVVDLFLEEESQHLAMLGDFVRKRISLEVEGAYSQEQYDI 490


>gi|322421132|ref|YP_004200355.1| ribonuclease, Rne/Rng family [Geobacter sp. M18]
 gi|320127519|gb|ADW15079.1| ribonuclease, Rne/Rng family [Geobacter sp. M18]
          Length = 937

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 188/503 (37%), Positives = 287/503 (57%), Gaps = 5/503 (0%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R A++++  +   D E   ++ T G++       +E+    A      ++   +      
Sbjct: 16  RVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVDIGLKKLGFLQMGELH 75

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             N         +    +  R+  IQEV++  Q L+VQ+ K ER NKG+A+TTY SL GR
Sbjct: 76  PENW----KWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTTYASLPGR 131

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMP  S    ISRK+ +  +RK LKEI   + +P G G I+RT    RT+ E+++D 
Sbjct: 132 YMVLMPG-SDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTRDELQKDL 190

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           + L+ L++ +RE  L      ++Y+E  LI R IRD +  DI E++V  +  +++ +D +
Sbjct: 191 DNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVFKDVRDAL 250

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           K + P++ ++V+ +++  PIF R  +E Q+D +++ +V L S G + I  TEALVSIDVN
Sbjct: 251 KEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVSIDVN 310

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           SG+ST E  +EDTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N  VEK LK 
Sbjct: 311 SGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNSEVEKTLKS 370

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +LK D+ARV V  IS FGLLEMSRQRIR ++ +++T  C +C G G ++S  ++ALS LR
Sbjct: 371 ALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAMALSFLR 430

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     + T   ++     +V  YLLN+KR  + + E  + + + V            +
Sbjct: 431 KVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVTVKGKPSYLLNQMEL 490

Query: 566 EKGSPVQALVNTGHKVGSDSQAP 588
           E     +       +  +    P
Sbjct: 491 ELIKREKLPQEELPQEKAQHGRP 513



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 4/183 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLI+A H EE RV ++ D R+ +LD E    +Q +GNIY   V RVE  LQAAFVD
Sbjct: 1   MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQ----IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            G  + GFL   E+HP+ ++    IP   R    +   + +   E +            +
Sbjct: 61  IGLKKLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS 120

Query: 117 DHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176
             +     P          +S   +                 ++       Y I+     
Sbjct: 121 ALTTYASLPGRYMVLMPGSDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMG 180

Query: 177 RQI 179
           R  
Sbjct: 181 RTR 183


>gi|84394052|ref|ZP_00992789.1| cytoplasmic axial filament protein [Vibrio splendidus 12B01]
 gi|84375338|gb|EAP92248.1| cytoplasmic axial filament protein [Vibrio splendidus 12B01]
          Length = 489

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 122/565 (21%), Positives = 210/565 (37%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E + ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGALQEIHVERDARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   +I P             + E+   Q     +++ V  G   +      
Sbjct: 60  IGLEKAAFLHASDIVPH---------TECVAENEKKQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E    + K+            I+
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSESERNRLKKVVSRYCDEHGGFII 170

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                  +                                            +   + LE
Sbjct: 171 RTAAEGADSNELA--------------------------------QDAAFLKRLWLKVLE 198

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                    R  G       I RDF                      V  E + I+   R
Sbjct: 199 RRGKHKARTRLYGELCLSQRILRDF----------------------VGTELSRIQVDSR 236

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                      +  E       +++  L                    + ++  LD    
Sbjct: 237 -----------LEYENLKEFTSEYVPELTEKLELYEGDKPIFDMYDTENEVQRSLD---- 281

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+QTEA+ ++D+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  +++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMLSEEHRKRVLTSLEAALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+  + V   L   +   + 
Sbjct: 402 CSSCPACEGRGSVKTVETVCYEILREITRVNRAYDADKFVVYAAAAVAEALEGDESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486


>gi|108762342|ref|YP_633779.1| ribonuclease [Myxococcus xanthus DK 1622]
 gi|108466222|gb|ABF91407.1| ribonuclease, Rne/Rng family [Myxococcus xanthus DK 1622]
          Length = 936

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 143/509 (28%), Positives = 243/509 (47%), Gaps = 7/509 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
            A       +          P++ S E   P                           + 
Sbjct: 280 AAALGDIIPSPAEEGAQAAKPSEVSGERRTPREAREAREPRNREKERGEKDKGRRPQEEK 339

Query: 155 ----GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
                  +    K +R   I++++K  Q ++VQI K+  G KGA +T+++S+ GR+ V M
Sbjct: 340 RRGDKHEDKEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFM 399

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           P       ISR+I+N  +R+ L++I   L  P G G I+RT   +  + +++ D  +L+ 
Sbjct: 400 PTVDHVG-ISRRISNEKERRRLRDIVDRLRPP-GTGFIVRTVAENVPQEKLESDIRFLIE 457

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W+ V         P L++ + +LI RA RDL+  D+ +++V   + Y     F+    P
Sbjct: 458 VWNQVVRKNEKRGGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDP 517

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           +    V  +E    +F   GIE +L    Q +V L S GY+II+Q EAL +IDVNSGR  
Sbjct: 518 ALRDRVALHEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYV 577

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
            +  +E+T  + N+EAA+EI  QLRLR++ G+I+ DFIDME+ +N   V K L+E+L +D
Sbjct: 578 GKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRD 637

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           +A+  V  IS  GL+EM+R+R+R S+     + C YC G G++++ ++VA  I R +   
Sbjct: 638 KAKTNVLRISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRRE 697

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
              Y    ++++ +++V   L  ++R  +     R+  SI V        + + I  G  
Sbjct: 698 APGYKDSTLVINCNAEVARLLQGEERNELRHLMDRYNKSIQVKAQQNYHREQYDIY-GRS 756

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
                +               +  +    
Sbjct: 757 ASGPEHKVASSPGSGDGELAMQQRKPDSN 785



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M++ ++I+A+   ETRV ++    + E   E +  K + GNIY  +V RV P +QAAFVD
Sbjct: 1   MSSILVINAA-GRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++          D      +  + + + E   D     +       + 
Sbjct: 60  IGLEKAAFLYVSDV--------VYDPDFARAQFELTEGEHEDAPDVPDESEAEAAEAAAR 111

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVK 153
                      E      ++A  + +     ++
Sbjct: 112 HAPPRHLEPEPEDAHFEPVAAPTESLPRDTALE 144


>gi|28198332|ref|NP_778646.1| ribonuclease G [Xylella fastidiosa Temecula1]
 gi|182680971|ref|YP_001829131.1| ribonuclease [Xylella fastidiosa M23]
 gi|28056402|gb|AAO28295.1| ribonuclease G [Xylella fastidiosa Temecula1]
 gi|182631081|gb|ACB91857.1| ribonuclease, Rne/Rng family [Xylella fastidiosa M23]
 gi|307579438|gb|ADN63407.1| ribonuclease G [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 497

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 221/398 (55%), Gaps = 2/398 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I E++++ Q L+VQ++KE  G KGA +TT +S+  RY VL+P  SK   +S +I +  +
Sbjct: 98  PIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLP-QSKMVGVSLRIEDEAE 156

Query: 229 RKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           R  LK +   L    G  G I+RT    ++   +  D  YL RLW  V           L
Sbjct: 157 RARLKAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSL 216

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YE+ +L  R++RDL  KD+ +I V  ++ + + + F+   MP  A  +  Y   HPIF 
Sbjct: 217 LYEDLSLSLRSVRDLIRKDVEKIKVDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFD 276

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             G+E ++      ++ L S GY++I QTEA+ ++DVN+G    +  +E+T  +TNLEAA
Sbjct: 277 LYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAA 336

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + +ARQLRLR+L G+IV+DFIDM++ ++   V + L+++L +D A+  V   S  GL+EM
Sbjct: 337 QALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTTVYDFSPLGLVEM 396

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R   S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V    +V
Sbjct: 397 TRKRTVESLQRQLSETCQTCGGRGTIKTVETVTYEIFRDITRAVRQFDAVRLLVIASPNV 456

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  + +++ A + E EA  G +I          + + +
Sbjct: 457 VSRMTDEESAAVAELEAVLGKAIRFQADPHYLQEQYEV 494



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E +  + + GNIY  +V RV P +QAAFVD
Sbjct: 1  MSEEILVNVTFG-ETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGMERTAFLHVNDV 73


>gi|255567240|ref|XP_002524601.1| hypothetical protein RCOM_1213430 [Ricinus communis]
 gi|223536154|gb|EEF37809.1| hypothetical protein RCOM_1213430 [Ricinus communis]
          Length = 963

 Score =  276 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 147/625 (23%), Positives = 258/625 (41%), Gaps = 82/625 (13%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL + ++ EL  E         ++YL  VT+  P +  AFV+ G +
Sbjct: 276 ILINSSICTMQRIAVLEEGKLVELLLEPVKTNVQCDSVYLGVVTKFVPHMGGAFVNIGHS 335

Query: 65  RHGFLPFLEI-HPDYYQIPFSDRQALLKE-----------SNIAQTDSEAVADDVTHGDV 112
           R      ++I       I    RQ   KE            + A   +E  + D+   D 
Sbjct: 336 RP---SLMDIKQSREPFIFPPFRQKTKKEKMNDSGLDSLEEHQAADGNEHTSQDIEGIDD 392

Query: 113 --TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC- 169
                +   L  +    +   E +E+  IS   + V+      G +          +   
Sbjct: 393 VAEFISQEDLVSLPHNDHDEHEADEDFDISEVKENVNGSIVDYGQADPRFEHFLGGRQHH 452

Query: 170 ---------------------------------------IQEVIKNRQILLVQIVKEERG 190
                                                      ++    ++VQ+VKE  G
Sbjct: 453 LEGEIMNRVVPSETEGSNGSKMSQPQYRKDSEHLLANDNKWTQVRKGTKIVVQVVKEGLG 512

Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250
            KG  +T Y  L  R+ +L     +   IS+KI+     +    +      P G G+  R
Sbjct: 513 TKGPTLTAYPKLRSRFWILHARCDRIG-ISKKISGIERTR--LRVIAKTLQPPGFGLTAR 569

Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIR 300
           T     +  E+++D E L+  W N+ E A ++              +++         ++
Sbjct: 570 TVAGGHSLEELQKDLEGLLSTWKNILEHAKSAALAADEGIEGAIPVILHTAMGQTLSVVQ 629

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D + + + +++V   + Y E  ++++ + P     V  Y+   P+F    IE +++++  
Sbjct: 630 DYFSEKVKKMVVDSPRTYHEVTNYLQEIAPDLCDRVELYDKRIPLFDEYKIEEEINNILS 689

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGR--STREHCIEDTALQTNLEAAEEIARQLRLRD 418
             V LP  G ++I QTEALVSIDVN G     + +  E   L  NLEAA+ IAR+LRLRD
Sbjct: 690 KRVPLPRGGSLVIEQTEALVSIDVNGGHVMFGQGNSQEKAILDVNLEAAKRIARELRLRD 749

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM +  N R V +++K +++ DR+ V+V  +S  GL+E++R+R+R SV  
Sbjct: 750 IGGIIVVDFIDMADDSNKRLVYEEMKTAVEGDRSMVKVSELSKHGLMEITRKRVRPSVSF 809

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVV 528
             ++ CT C   G + +  +    I + +   L                  ++     + 
Sbjct: 810 MISEPCTCCHATGRVEALETSFSKIEQEICRLLAMMDQKAYPENPKTWPRFLLRVDHHMC 869

Query: 529 LYLLNQKRATIVEYEARFGVSINVV 553
            YL + KR  +    +   V I + 
Sbjct: 870 NYLTSGKRTRLAILSSSLKVWILLK 894


>gi|33596354|ref|NP_883997.1| putative ribonuclease [Bordetella parapertussis 12822]
 gi|33602360|ref|NP_889920.1| putative ribonuclease [Bordetella bronchiseptica RB50]
 gi|33566123|emb|CAE37023.1| putative ribonuclease [Bordetella parapertussis]
 gi|33576799|emb|CAE33878.1| putative ribonuclease [Bordetella bronchiseptica RB50]
          Length = 487

 Score =  276 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 117/410 (28%), Positives = 209/410 (50%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                  + +    I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P+   
Sbjct: 75  ENRSERSQGQTPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +     +  + +   +      G I+RT     T  EI  D EYL +LW +V
Sbjct: 135 IGISQKIDSESERTQLRERLQALMPPEEKGGFIVRTQAEGATDEEIAADLEYLRKLWASV 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A +  AP  ++++  L +R +RD+       I+V         +++ ++  PS A  
Sbjct: 195 QAAARSQPAPTALHQDLTLGQRVLRDMVGPHTGTILVDSRSTSSALQEWARVYTPSVAER 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +R Y    P+F  + ++ ++       V L S GY+I++QTEAL ++DVN+G        
Sbjct: 255 IRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNF 314

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G++++DFIDME+  +  +V  +LK++L +DR R+ 
Sbjct: 315 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDPDHRETVLAELKKALSRDRTRMT 374

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+  G +R+  +V   ILR +     Q+ 
Sbjct: 375 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCQSRGNVRTARTVCYEILREILREARQFN 434

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +     VV   L ++   +       G  I++ +  + + + + I
Sbjct: 435 PREFRILAAQGVVDLFLEEESQHLAMLGDFVGKQISLEVESQYSQEQYDI 484


>gi|95929472|ref|ZP_01312215.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684]
 gi|95134588|gb|EAT16244.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684]
          Length = 952

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 214/637 (33%), Positives = 328/637 (51%), Gaps = 13/637 (2%)

Query: 81  IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
           +P  DR A++++  + + D E+     T G++       +E+    A      +    + 
Sbjct: 28  LPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFIDYGAQRPGFLQ 87

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
                 S                  R+  I E++K  Q +LVQ+VKEERG KGAA+TT +
Sbjct: 88  IGEIHPSLYPKRDDEGQ------SNRRPPITEILKRGQQILVQVVKEERGTKGAALTTEV 141

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SL GRY VL+P +S    ISRKI N   RK +K     LE+P  MG I+RTA   +   E
Sbjct: 142 SLPGRYMVLIPQSSSRG-ISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQPPEE 200

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           +KRDF+YL+  ++++   +  + AP L+Y+E NL+ R+IRD +  +I E+++   + ++E
Sbjct: 201 LKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREVFQE 260

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           A+DF K +MP Y  +V+ +++  PIF R  IE Q+  L    V LPS G ++++QTEALV
Sbjct: 261 ARDFFKAVMPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTEALV 320

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVNSG+   E  +E TA + NLEAA E+ARQLRLRD+ GLIV+DFIDM +++N R VE
Sbjct: 321 AIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAREVE 380

Query: 441 KKLKESLKKDRARVQVGAIS-NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           K LK +LK D+ARV VG IS  FGLLEMSRQRI++++ E +  +C +C+G+G IRS  S 
Sbjct: 381 KALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSDESR 440

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           ++++LR ++    +     ++     D   YLLN KR  + + E R+ + I +       
Sbjct: 441 SIALLRRIQAGTAKGHIEAVVCTAALDTANYLLNNKRRELYDLEQRYKLIIEIKGDPGYL 500

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            +   IE             +   + Q P  D ++      E +LP   S    D ++  
Sbjct: 501 PEQVDIEFVKQS----REQRQENRNDQGPLVDTDLSERANIEVVLPDASSAEQGDQENAQ 556

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             E+     RK  RRRRR     +  +             +  S     +          
Sbjct: 557 KEEKDEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQDKAAQTQAPQ 616

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           ++ A    E         S PE + +   S    ++T
Sbjct: 617 QSEAPSQPEQ-PPIAEKSSEPEPQENTPKSGENSEET 652



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ KMLI+A+  EE RV ++ D  + ELD ES   +Q KGNIY  +V RVE  LQAAF+D
Sbjct: 18  MSKKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFID 77

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQ 87
           YG  R GFL   EIHP  Y  P  D +
Sbjct: 78  YGAQRPGFLQIGEIHPSLY--PKRDDE 102


>gi|332283769|ref|YP_004415680.1| putative ribonuclease [Pusillimonas sp. T7-7]
 gi|330427722|gb|AEC19056.1| putative ribonuclease [Pusillimonas sp. T7-7]
          Length = 487

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/410 (28%), Positives = 200/410 (48%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                         I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P+   
Sbjct: 75  QNRKERSNGSAITPIEKLLFEGQSLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +        + + R        G I+RT     T  E++ D  YL  LW ++
Sbjct: 135 VGISQKIESEEDRISLRERVLRFSAPDEKGGFIVRTQAEGATDDELQADQSYLRTLWSSI 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           ++ A +   P L++ +  L +R +RD+       I+V      +    +     PS    
Sbjct: 195 QDKARSQPTPSLLHNDLTLAQRVLRDMVGPHTGTIMVDSRSTTQSLLGWASTYTPSVLDR 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           ++ Y    P+F  + ++ ++       V L S GY+II+QTEAL ++DVN+G        
Sbjct: 255 IKHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 314

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA  +ARQLRLR+L G+I++DFIDM++ ++  SV  +L + L KDR R+ 
Sbjct: 315 DDTIFKTNLEAAVALARQLRLRNLGGIIILDFIDMDDAEHRNSVLAELNKVLSKDRTRMT 374

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   S  GL+EM+R+R R S+     + C  C+  G +R+  ++   ILR +     Q+ 
Sbjct: 375 VSGFSQLGLVEMTRKRTRDSLAHQLCEPCPTCQSRGNVRTPRTLCYEILREILRESRQFN 434

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +    D+V   L ++ A +       G  I++ +  +   + + I
Sbjct: 435 PKEFRILASQDIVDLFLEEESAHLAMLGDFIGKPISLEVESQYTQEQYDI 484


>gi|329911385|ref|ZP_08275491.1| Ribonuclease E [Oxalobacteraceae bacterium IMCC9480]
 gi|327545937|gb|EGF31035.1| Ribonuclease E [Oxalobacteraceae bacterium IMCC9480]
          Length = 487

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 197/397 (49%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I++++ +   + VQ++K+  G KGA ++T +S+AGR  V +P  S      R       
Sbjct: 88  PIEKLLFDGMAITVQVIKDPIGTKGARLSTQISIAGRMLVYLPQDSHIGISQRIEKESER 147

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
                ++ + L      G I+RT     ++ +++ D +YL + W  +   A +     L+
Sbjct: 148 EALRGKVQKLLPPEEKGGFIIRTMAEDASEADLQMDIDYLRKTWSTIAASAKSKPPTSLL 207

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           +++ +L +R +RD    D S I V   + +   + F     PS    +  Y    P+F  
Sbjct: 208 HQDLSLAQRVLRDFVGDDTSTIQVDSRENFLMLQQFGTSYTPSVLTRLSHYTGERPLFDL 267

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            G+E ++       V L S GY+I++QTEA+ +IDVN+G        +DT  +TNLEAA 
Sbjct: 268 YGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSYVNGRNFDDTIFKTNLEAAH 327

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            IARQLRLR+L G+I++DFIDME  ++  SV  +L ++L +DR ++ V   S  GL+EM+
Sbjct: 328 AIARQLRLRNLGGIIILDFIDMENAEHRASVLSELHKALARDRTKMSVSGFSALGLVEMT 387

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+R R S+     + C  C G G +++  ++   ILR +     Q+      +     VV
Sbjct: 388 RKRTRESLARILCETCPACSGRGQVKTARTICYEILRELLREAKQFNPREFRILASQIVV 447

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              L ++   +       G  I++ +      + + I
Sbjct: 448 DMFLEEESQHLAMLGDFIGKPISLQVETVYQQEQYDI 484


>gi|291615207|ref|YP_003525364.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1]
 gi|291585319|gb|ADE12977.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1]
          Length = 485

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/398 (30%), Positives = 206/398 (51%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I++V+   Q LLVQ++K+  G KGA ++T LS AGR  V +P  S      R      
Sbjct: 85  KPIEKVLFEGQSLLVQVIKDPIGTKGARLSTQLSFAGRLLVYLPQESHIGVSQRIENEEE 144

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
                 ++ + L      G I+RT   S +  E++ D  YL +LW N+++ +L    P L
Sbjct: 145 RESLRNKLQQVLPAEHKGGYIIRTMAESASDSELRADVAYLDKLWSNLQQQSLQLAPPAL 204

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +Y+E ++  R +RD   ++ S ++V   + +     F      S    + +Y    P+F 
Sbjct: 205 LYKELDISLRVLRDFVNEETSRLLVDSRETHERMMSFATDYSASAVPKLERYVGARPLFD 264

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             G+E +++      V L S GY+II+QTEAL ++DVN+G        +DT  +TNLEAA
Sbjct: 265 LYGVEEEIERALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNFDDTIFKTNLEAA 324

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + IARQLRLR+L G+I+ DFIDM+  ++  +V ++ K+ L  DR R+ V   S  GL+EM
Sbjct: 325 QVIARQLRLRNLGGIIICDFIDMDTVEHRDAVLEEFKKMLAHDRTRISVNGFSALGLVEM 384

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+     + C  C+G G +++  +V   ILR +     Q+ A    +     V
Sbjct: 385 TRKRTRESLAHVLCEPCPTCQGRGEVKTAQTVCYEILREIVREARQFNAREYRILASQQV 444

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +   L+++  ++       G  I++ +    + + + +
Sbjct: 445 IDLYLDEESQSLAMLSDFIGKPISLQVETLYSQEQYDV 482



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV V++   V+EL  E   ++ +  N+Y+ KV RV P +Q+AF+D
Sbjct: 1  MTEEILINVT-PQETRVAVMQQGVVQELHIERGSQRGLVSNVYVGKVKRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERSAFLHVADI 73


>gi|307544579|ref|YP_003897058.1| ribonuclease E [Halomonas elongata DSM 2581]
 gi|307216603|emb|CBV41873.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581]
          Length = 1179

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 196/561 (34%), Positives = 306/561 (54%), Gaps = 6/561 (1%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           K  S +   K+   +  I+EV+K  Q ++VQ+ KEERGNKGAA+TT++SLAGR+ VLMPN
Sbjct: 71  KEVSRDYFIKEPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGRFLVLMPN 130

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   ISR+I        LKE    L VP  MG+I+RTAG  R+  E++ D +YL+++W
Sbjct: 131 NPRAGGISRRIEGEERA-QLKEAMGQLTVPDKMGLIVRTAGIGRSPEELQWDLDYLVQVW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           +++   A    AP L+Y E N+I RA+RD   +DI E+++  E+ ++EA  F++ +MPSY
Sbjct: 190 ESITGEAGKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSEEVHQEALTFIRQVMPSY 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            + +++Y D  P+F R  IE Q+++ ++ EV LPS G ++I+ TEALVSID+NS R+TR 
Sbjct: 250 QQKIKRYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSIDINSARATRG 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM   +N R VE +++++LK DRA
Sbjct: 310 SDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRVRDALKIDRA 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           RVQ+G IS FGL+EMSRQR+R S+ E++  VC  C G G IR   S++LSI+R +EE  +
Sbjct: 370 RVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSISLSIMRLIEEEAM 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +  +  I       V  YLLN+KR+ + + E R GV + ++   ++    + +++     
Sbjct: 430 KERSAQIRAILPVPVATYLLNEKRSVLADIEQRQGVRVVLLPHPDMDTPHYDVQRLRDDH 489

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                G +   +    +             +     +       +   +        +  
Sbjct: 490 VDEEGGIQSSFELSTDTEVGREPEAAFGRPVKRDEAAVKTVVHHEPAPASLQQDTPSQPA 549

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-LLENGAHGFTENYD 691
                 +PA +       +        +    +  +          L         ++  
Sbjct: 550 A----NKPAANKPATSKPAPGKPAAAPVPSQREGVLGRLVKGFTRLLSGEEDTQSGQSTA 605

Query: 692 VSIPPVSTPEMESSNSSSDPI 712
            S  P S  +   ++      
Sbjct: 606 QSAQPRSETQTRDTSGKQQDK 626



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 63/105 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  K+TRVEPSL+AAFVD+G
Sbjct: 2   KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
             RHGFLP  E+  DY+    S R ++ +     Q     V  + 
Sbjct: 62  AERHGFLPLKEVSRDYFIKEPSGRPSIKEVLKEGQEVIVQVDKEE 106


>gi|30678106|ref|NP_850989.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana]
 gi|330250721|gb|AEC05815.1| RNAse E/G-like protein [Arabidopsis thaliana]
          Length = 619

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 135/558 (24%), Positives = 246/558 (44%), Gaps = 59/558 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 48  ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 107

Query: 65  RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112
           RH F+   +I  +   +   PF D            L      A  + E  + D     +
Sbjct: 108 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 164

Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145
              + +   E                                     +E   I       
Sbjct: 165 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 224

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             +++     +        K    IQ  ++    ++VQ+VKE  G KG  +T Y  L  R
Sbjct: 225 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 282

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D 
Sbjct: 283 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 339

Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + L+  W N+ + A ++            P L++         ++D +   + +++V   
Sbjct: 340 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 399

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
           + Y E   +++ + P     V  ++   P+F    IE +++ +    V L + G ++I Q
Sbjct: 400 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 459

Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEALVSIDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++
Sbjct: 460 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 519

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N R V +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G +
Sbjct: 520 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 579

Query: 494 RSQSSVALSILRSVEEYL 511
            +  +    I + +   L
Sbjct: 580 EALETTFSKIEQEICRQL 597


>gi|33593311|ref|NP_880955.1| putative ribonuclease [Bordetella pertussis Tohama I]
 gi|33572667|emb|CAE42590.1| putative ribonuclease [Bordetella pertussis Tohama I]
 gi|332382720|gb|AEE67567.1| putative ribonuclease [Bordetella pertussis CS]
          Length = 487

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 117/410 (28%), Positives = 209/410 (50%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                  + +    I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P+   
Sbjct: 75  ENRSERSQGQTPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +     +  + +   +      G I+RT     T  EI  D EYL +LW +V
Sbjct: 135 IGISQKIDSESERTQLRERLQALMPPEEKGGFIVRTQAEGATDEEIAADLEYLRKLWASV 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A +  AP  ++++  L +R +RD+       I+V         +++ ++  PS A  
Sbjct: 195 QAAARSQPAPTALHQDLTLGQRVLRDMVGPHTGTILVDSRSTSSALQEWARVYTPSVAER 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +R Y    P+F  + ++ ++       V L S GY+I++QTEAL ++DVN+G        
Sbjct: 255 IRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNF 314

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G++++DFIDME+  +  +V  +LK++L +DR R+ 
Sbjct: 315 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDPDHRETVLAELKKALSRDRTRMT 374

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+  G +R+  +V   ILR +     Q+ 
Sbjct: 375 VNGFTQLGLIEMTRKRTRDSLAHQLCEPCPMCQSRGNVRTARTVCYEILREILREARQFN 434

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +     VV   L ++   +       G  I++ +  + + + + I
Sbjct: 435 PREFRILAAQGVVDLFLEEESQHLAMLGDFVGKQISLEVESQYSQEQYDI 484


>gi|255690594|ref|ZP_05414269.1| ribonuclease G [Bacteroides finegoldii DSM 17565]
 gi|260623863|gb|EEX46734.1| ribonuclease G [Bacteroides finegoldii DSM 17565]
          Length = 524

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 136/579 (23%), Positives = 245/579 (42%), Gaps = 60/579 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL ++ ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +     +  +  +K++   +    +++      D+    D ++
Sbjct: 60  VGYEKDAFLHYLDLGPQF-----NSLEKFVKQTLSDKKKLNSISKATLLPDLD--KDGTV 112

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                +         +  IS     +++     G     +P   K     +      +  
Sbjct: 113 SNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR 172

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L Q+                        + P       I R +        L    R L 
Sbjct: 173 LKQL---------------------LMSIKP--KNFGVIVRTVAEGKRVAELDGELRVLI 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 ++                                    P L+YEE +     +R
Sbjct: 210 KHWEDAMVKVQKAT----------------------------KYPTLIYEETSRAVGLLR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+      I V+ E  Y E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S   
Sbjct: 242 DLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDNFGITKQIKSSFG 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419
             ++  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD+
Sbjct: 302 KTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRDM 361

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  +
Sbjct: 362 GGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVN 421

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           TT+ C  C G G I+S      ++   ++  + +       +H H  V  Y+     +  
Sbjct: 422 TTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAYINQGLVSLK 481

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
            +++ ++G  I V+   +LA   +        +  +   
Sbjct: 482 RKWQMKYGFGIKVIPSQKLAFLQYVFYDTHGEEIDMKEE 520


>gi|322417679|ref|YP_004196902.1| ribonuclease, Rne/Rng family [Geobacter sp. M18]
 gi|320124066|gb|ADW11626.1| ribonuclease, Rne/Rng family [Geobacter sp. M18]
          Length = 496

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 140/565 (24%), Positives = 241/565 (42%), Gaps = 72/565 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N+++I+ +   ETR+ ++ +  + EL  E    K I GNIY  +V RV P +QAAFVD
Sbjct: 1   MGNELVINTT-SHETRIALIENGTIAELYVERSRVKGIIGNIYKGRVVRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL   ++                          +A+ +  ++       +   
Sbjct: 60  IGLEKAAFLYVADV-------------------------FDAMDEYDSYIQPEEGEEPVP 94

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
             + PI    QE +E  +  +   + +       G+          ++ +     +   +
Sbjct: 95  HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 148

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  E    +   +   +   G           G  I R ++     ++L      L 
Sbjct: 149 SRRIEDEAERERLKEIVDRIKPVG-----------GGFIVRTVSEGKSEEDLVADLHYLT 197

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I +    +     I  D +   ++  ++   ++  +       E + I + I 
Sbjct: 198 KLWDE--IAKKKDKAGAPTLIHSDLDVTQKVVRDILTESVERIVVD-SKPEHDKIVQFIS 254

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                                        P     +  Y++  PIF   G+EV++     
Sbjct: 255 TFM--------------------------PKMKYSIELYDEEEPIFDHFGLEVEISRALG 288

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II QTEAL +IDVN+GR   +H +EDT L+TNLEA +EIA QLRLR+L 
Sbjct: 289 RKVWLKSGGYIIIEQTEALTAIDVNTGRYVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 348

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDME++ N   V   L+E+LK D+++  +  IS  GL+EM+R+R+R S+    
Sbjct: 349 GIIIIDFIDMEKEVNREKVYGALEEALKSDKSKTNILKISELGLVEMTRKRVRESLGRMM 408

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC+G GY++S+ +V   I R +   +L      +++  H  V   L +++R  + 
Sbjct: 409 CEPCPYCEGRGYVKSKITVCHEIFRELRREMLDIRGTKVMLTVHPQVADLLYDEERRGLE 468

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E  F   I V        + F +
Sbjct: 469 ELEKNFKKRITVRAKPGFHQEQFEV 493


>gi|170728719|ref|YP_001762745.1| ribonuclease G [Shewanella woodyi ATCC 51908]
 gi|169814066|gb|ACA88650.1| ribonuclease, Rne/Rng family [Shewanella woodyi ATCC 51908]
          Length = 500

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 117/562 (20%), Positives = 209/562 (37%), Gaps = 80/562 (14%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++LI+ +   E RV ++    ++E+  E   K+ + GNIY  KV+RV P +QAAFVD G 
Sbjct: 16  ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 74

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           ++  FL   +I P             + E         A+ + V  G   +         
Sbjct: 75  DKAAFLHASDIVPH---------TECVAEGEKGNFVVRAIGELVRQGQDIMVQVVKDPLG 125

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
              A  + +    S         S+V   +    E++  + K+            I+   
Sbjct: 126 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEIRSRLKKLTEPFVDEDGGFII--- 182

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
                         T    AG   ++     +     R++ + V  +  +     L    
Sbjct: 183 -------------RTAAESAGEKELV-----QDAAFLRRVWSKVSERRKRRGVSLLYQDL 224

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
            + V +          +I+ D            +  +  +A  + +  G +    + D  
Sbjct: 225 ALPVRIVRDFVGTELDQIQVDSSQTYEELQAFADEFMPEIAEKIEHYNGPVPIFDLYD-- 282

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
                                                          +E ++      +V
Sbjct: 283 -----------------------------------------------VENEVQRALGRKV 295

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L S GY+II+QTEA+ ++D+N+G       +E+T   TN+EA   IARQLRLR+L G+I
Sbjct: 296 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNMEATHAIARQLRLRNLGGII 355

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           ++DFIDM + ++ + V   L+ +L  D  +  +   S  GL+EM+R+R R S+       
Sbjct: 356 IIDFIDMLKSEHQKRVLASLELALSHDTVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 415

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G +++  +V+  I R +      Y A   +V+    V   L  ++   + E  
Sbjct: 416 CPVCLGTGSLKTVETVSYEIFREIIRLDRSYDADEFLVYCSPTVFNSLTGEESHLVAELG 475

Query: 544 ARFGVSINVVIGIELADKLFYI 565
              G  +     +  A   F +
Sbjct: 476 VYIGKRVRFQNEVMYAQNKFDV 497


>gi|301062335|ref|ZP_07202998.1| S1 RNA binding domain protein [delta proteobacterium NaphS2]
 gi|300443539|gb|EFK07641.1| S1 RNA binding domain protein [delta proteobacterium NaphS2]
          Length = 500

 Score =  274 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 166/440 (37%), Positives = 265/440 (60%), Gaps = 2/440 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +       +  + +   KK      I++++K  Q LLVQ+ +E +G+KGA +TT
Sbjct: 63  SDKNGFLSVTDIHPEYYASDQDKKKEGAPPRIEKILKKGQELLVQVTREMQGHKGAQLTT 122

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSLA RY VLMP +  G  IS+KI +  +R+ LK I    ++P G+G I+RTA   ++K
Sbjct: 123 YLSLASRYLVLMPGSKGG--ISKKIDDEEERQRLKSIMTQFKLPEGVGYIVRTAAFKQSK 180

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
            +I RD   L+R+W N+++    +    LV++E ++  R +RD +  +I+E++V  ++  
Sbjct: 181 RDISRDLNRLLRMWKNIKKNVREASPLTLVHKEQDVCLRTLRDYFTSEIAEVLVDDKETL 240

Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378
            + +D+MK++ P +   V+ +++  PIF +  IE Q++++++  V L S G ++I+ TEA
Sbjct: 241 NKVRDYMKVISPRHQGRVKLFKEKRPIFAQYEIEKQIETIYRNRVPLKSGGSIVIDPTEA 300

Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
           LV+IDVNSGR      +E+TA +TN+EAAEEIARQLRLRD+ GL+V+DFIDM EKK+ R 
Sbjct: 301 LVAIDVNSGRMRTGADVENTAFKTNIEAAEEIARQLRLRDMGGLVVIDFIDMREKKHIRE 360

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           VEK L++  K+DRA++ +  IS FGLLE+SRQR+R S+   + + C YC+G G + S  +
Sbjct: 361 VEKVLRDKAKEDRAKISLSNISKFGLLELSRQRLRPSIEAVSYQTCAYCQGRGLVPSIET 420

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
            A+S LR +   L +     +      DVV YL N+KR  +   E R+G+ I +     L
Sbjct: 421 AAISFLRRIRMGLSKKGILRVKGVLAEDVVEYLQNRKRKDLARMEMRYGLEIILQGDPSL 480

Query: 559 ADKLFYIEKGSPVQALVNTG 578
           +     +E     ++     
Sbjct: 481 SPDGGLLEFVKEERSPAPRP 500



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +KMLI+A   EE R+ V++D R++    E+   +Q  GNIY   V R+EPSLQA FV+
Sbjct: 1   MKSKMLINAVEAEEFRIAVIKDGRLDGFYIETTATEQKTGNIYKGVVERIEPSLQACFVN 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           +G +++GFL   +IHP+YY    SD+    + +            ++
Sbjct: 61  FGSDKNGFLSVTDIHPEYY---ASDQDKKKEGAPPRIEKILKKGQEL 104


>gi|308273585|emb|CBX30187.1| Ribonuclease E [uncultured Desulfobacterium sp.]
          Length = 490

 Score =  274 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 180/469 (38%), Positives = 264/469 (56%), Gaps = 1/469 (0%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156
           +                   + +   +        E   +++                  
Sbjct: 16  RIAKVKDNKLEEFHTENAAREITQSNIYKGIVTRIEPSLQAVFIDYGAERQGFLQKNEIH 75

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            +           I  ++K  Q  LVQ+ K+    KGA +TTY+SLAGR+ VLMP  S+G
Sbjct: 76  SDYFHDSDSGDRSITSIVKQGQEFLVQVTKDPIMKKGAMLTTYISLAGRFVVLMPG-SEG 134

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
             +SRKI++  +RK LKE    +++P G G+I+RTAG   TKIEI RD  YL+RLW N++
Sbjct: 135 VGVSRKISDEEERKRLKETVSNIKIPEGFGIIVRTAGTDSTKIEISRDIAYLLRLWKNIK 194

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
              +   +P L+Y+E +L+ R+IRD +  D++EI++     YRE +DF+K++ P +A IV
Sbjct: 195 SNVMEVKSPALLYKERHLVVRSIRDYFTSDVNEILIDDPAVYREVRDFIKIISPKHATIV 254

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
           + ++   PIF +  +E Q+ S+ +  V L S G ++I QTEALV+IDVNSG++T    IE
Sbjct: 255 KLFKGDKPIFTKFQLENQISSIFENRVKLKSGGSIVIEQTEALVAIDVNSGKATHTKSIE 314

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +TA  TNLEAAEEIARQLRLRDL GLIVVDFIDM + K+N  VEK  K  +K+D+AR++ 
Sbjct: 315 ETAHATNLEAAEEIARQLRLRDLGGLIVVDFIDMRDSKHNLEVEKVFKTFVKEDKARIKF 374

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
           G IS FGL+E+SRQRIR S+   + + C+YCKG G   S  +  LS LR +    L+   
Sbjct: 375 GKISRFGLMELSRQRIRPSIEFGSYEPCSYCKGKGVTPSAETQGLSFLRKLSLAALKDDI 434

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            ++      +V  YL N+KR  I + E R  ++I +     +      I
Sbjct: 435 TSVKGIVPVNVADYLSNKKRKDIFDIETRRSLNIRIEGNSSMLPGECEI 483



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ K++I+A    E R+  ++DN++EE   E+  ++  + NIY   VTR+EPSLQA F+D
Sbjct: 1  MSGKIIINAVDPAECRIAKVKDNKLEEFHTENAAREITQSNIYKGIVTRIEPSLQAVFID 60

Query: 61 YGGNRHGFLPFLEIHPDYY 79
          YG  R GFL   EIH DY+
Sbjct: 61 YGAERQGFLQKNEIHSDYF 79


>gi|213963165|ref|ZP_03391423.1| ribonuclease, Rne/Rng family [Capnocytophaga sputigena Capno]
 gi|213954249|gb|EEB65573.1| ribonuclease, Rne/Rng family [Capnocytophaga sputigena Capno]
          Length = 514

 Score =  274 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 153/575 (26%), Positives = 261/575 (45%), Gaps = 68/575 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S        +LRD R+ EL  E +      G+I LAKV +    L AAFV+
Sbjct: 1   MDKELII-RSGSSYVDFALLRDGRLIELHKEEDANGLGVGDIMLAKVRKPIQGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P       +  Q  LK     +    ++ D     D+        
Sbjct: 60  VGHEKDAFLHYHDLGPQ-----LASLQKFLKWVLSGKLKDFSLKDFPLEPDINKNGS--- 111

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                                            I + +K  Q +
Sbjct: 112 -------------------------------------------------IADTLKPNQPI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +++ LS+AGRY VL+P + +  +IS+KI    +++ L+++ +G++
Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDR-ISISQKIEGKAEKERLRKLLQGIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G GVI+RT    +   E+ +D + L   W  +      +V P  V  E +     +R
Sbjct: 182 PK-GFGVIVRTVAEGKKVAELDKDLQGLFNRWVLMCRKIQKAVYPSKVMSEVSKTGAILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I V  E  Y + K +++ + P    IV+ Y    PIF +  IE Q+ +   
Sbjct: 241 DMFNDTFTGIHVDNEHLYEQIKKYVREIAPEKENIVKLYHSSVPIFEKFHIERQIKTAFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419
             V++P   Y++I  TEAL  IDVNSG  + ++  ++ TAL  NL AA EIARQLRLRD+
Sbjct: 301 RTVSMPKGAYLVIEHTEALHVIDVNSGNHSNKNNDQETTALSVNLIAATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM   +N R +   L+  + +DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMGNSENRRILFDHLRNEMAEDRAKHKILPPSKFGLIQITRQRVRQELNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVVLYLLNQKRAT 538
           T +     +G   I +   +   I   +E  + +      I+++ H  +  YL     ++
Sbjct: 421 TKEENPSKEGE--IEAPIVLVDKINIELESIIKEDAYKGRIVLNAHPFIAAYLTKGLFSS 478

Query: 539 IV-EYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           I  ++  ++   I ++     +   +   +    +
Sbjct: 479 IRFKWFLKYKRWIKILPRDAYSYLEY---RFKTSE 510


>gi|311695113|gb|ADP97986.1| ribonuclease, Rne/Rng family [marine bacterium HP15]
          Length = 1074

 Score =  274 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 200/584 (34%), Positives = 307/584 (52%), Gaps = 12/584 (2%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++     +  P + + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL
Sbjct: 68  KEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVL 127

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    ++VP  MG+I+RTAG  RT  E++ D +YL+
Sbjct: 128 MPNNPRAGGISRRIEGDERAQ-LKEAMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLV 186

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + W+ + + A    AP L+++E N+I RA+RD   +DI E+++     Y +  +F++ +M
Sbjct: 187 QFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYEDVLNFVRAVM 246

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P++   ++ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+
Sbjct: 247 PTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRA 306

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   K+ R VE+K++E+L+ 
Sbjct: 307 TKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEI 366

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E+ ++VC  C+G G IR   S+ALSI+R + E
Sbjct: 367 DRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYE 426

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +       V  +LLN+KR  + + EAR  VS+ VV    +    F I +  
Sbjct: 427 ESSKDKTGEVRAVVPVSVATFLLNEKRKQLADIEARQEVSVVVVPVPHMETPHFEIIRMR 486

Query: 570 PVQALVNTGHKVGSDSQAPSYDKN-------IECVWQDEALLPIPKSESLEDIQDNIVSE 622
             +             +    ++         + V +  A+  I  S             
Sbjct: 487 QDETTPEHISSHQVAQEYSEREEEIFEAPTPEKPVREQAAVKAIRPSAPAPAPAPAAPKA 546

Query: 623 ESTGVIR----KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           + T        +R  R+     + +        + S  Q     +               
Sbjct: 547 DETTEQEEGLFRRLGRKIAGFFSGEEEQKVENREQSQSQREDRRNQGRQDRRKSRVARGD 606

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +      + N           +       +    +      R+
Sbjct: 607 DQRAGGNRSGNERRQGGQQGRGDDNRGRGRNRNDDQNRGNQNRQ 650



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 56/76 (73%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+H EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G  
Sbjct: 1  MLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDFGAE 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          RHGFLP  EI  +Y++
Sbjct: 61 RHGFLPLKEISKEYFK 76


>gi|163787182|ref|ZP_02181629.1| Ribonuclease G [Flavobacteriales bacterium ALC-1]
 gi|159877070|gb|EDP71127.1| Ribonuclease G [Flavobacteriales bacterium ALC-1]
          Length = 514

 Score =  274 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 149/564 (26%), Positives = 260/564 (46%), Gaps = 62/564 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  + LI  S  +     +L+D ++ EL  + E      G+I++AK+ +V P L AAFV+
Sbjct: 1   MNKE-LIVRSSSDIVDFALLKDGKLIELHKDEEDNDFAVGDIFIAKIRKVMPGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  + GFL + ++ P   Q+P       +K  +  +     + D     D+      + 
Sbjct: 60  VGYEKDGFLHYHDLGP---QLPS--LLKFIKRVSTGKLRDYTLKDFPKEKDLDKHGKIAH 114

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
              +  +                                                    +
Sbjct: 115 AIKSNQS----------------------------------------------------I 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE    KG  +++ LS+AGRY VL+P +++  +IS+KI +  ++  LK + + + 
Sbjct: 123 LVQVVKEPISTKGPRISSELSIAGRYIVLVPFSNR-ISISQKIESQEEKDRLKRLVKSI- 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G GVI+RT    +   E+  D + L+  W  + +    +  P  V  E N     +R
Sbjct: 181 TPKGFGVIIRTVAEGKKVAELDSDLQNLLGRWTAMCKKLYKAHHPTKVLGEMNKASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    S I+V  E+ Y + KD+++ + P    IV+ Y++  PIF + GIE Q+ +   
Sbjct: 241 DIFNDSFSGIVVDDEELYIQVKDYVQQIAPKKESIVKHYKNGVPIFEKFGIERQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEAL  +DVNSG RS +E   EDTAL+ N+ +A EIARQLRLRD+
Sbjct: 301 RTVSMAKGAYLVIEHTEALHVVDVNSGNRSNKEKSQEDTALEVNMISAAEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IV+DFIDM   +N + +   L++ +K D+A+ ++   S FGL++++RQR+R      
Sbjct: 361 GGIIVIDFIDMGRAENRKKLYNYLRDEMKDDKAKHKILPPSKFGLVQITRQRVRPERNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +      G   I +   V   I     + + +     + ++ H  +  +L     +  
Sbjct: 421 TKEENPNLVGGDEIEAPIKVVERI-NQDLQRIFKKDYKKVTLNAHPFIAAFLTKGFPSPR 479

Query: 540 VEYEARFGVSINVVIGIELADKLF 563
            ++       + V+         +
Sbjct: 480 SKWFVEHKKWVKVLPRDAYTYLEY 503


>gi|121594274|ref|YP_986170.1| ribonuclease G [Acidovorax sp. JS42]
 gi|120606354|gb|ABM42094.1| RNAse G [Acidovorax sp. JS42]
          Length = 495

 Score =  274 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 129/424 (30%), Positives = 209/424 (49%), Gaps = 2/424 (0%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V       +GG      +K +    I++ +   Q L+VQ++K+  G+KGA ++T +S+A
Sbjct: 69  HVADVWHRQEGGEAPMFARKNEPPVPIEKQVFEGQALMVQVIKDPIGSKGARLSTQISIA 128

Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           GR  V +P         +         R  L+++        G G ILRT G   +  E+
Sbjct: 129 GRLLVFLPQDDHVGVSQKIPQAERDALRTRLQKLVDDQASGNGGGFILRTNGEDASDEEL 188

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             D  YL + W  +R+ AL      L+Y++ +L++R +RDL  +    I +   + +   
Sbjct: 189 AEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRIDSREQFVAL 248

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F    MP+ A  ++ Y+   PIF    I+ ++       V L S GY+I++QTEAL +
Sbjct: 249 KAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIVDQTEALTT 308

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G        +DT  +TNLEAA  IARQLRLR+L G+++ DFIDM  + +  +V  
Sbjct: 309 IDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAVLA 368

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           + ++ L +DR +  VG  S  GL+EM+R+R R S+     + C  C+GAG +++  SV  
Sbjct: 369 EFRKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCQGAGQVKTARSVCY 428

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR V     Q+      V     VV   L+++   +       G  I++     +   
Sbjct: 429 DILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQAESAMGQA 488

Query: 562 LFYI 565
            + I
Sbjct: 489 QYDI 492



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV V+ +  V+EL  E   ++ + GN+YL KV+RV P +Q+AF+D
Sbjct: 1  MQQDILINWS-PQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 IGLERAAFLHVADV 73


>gi|71276040|ref|ZP_00652321.1| Ribonuclease E and G [Xylella fastidiosa Dixon]
 gi|71899462|ref|ZP_00681620.1| Ribonuclease E and G [Xylella fastidiosa Ann-1]
 gi|170729677|ref|YP_001775110.1| ribonuclease G [Xylella fastidiosa M12]
 gi|71163123|gb|EAO12844.1| Ribonuclease E and G [Xylella fastidiosa Dixon]
 gi|71730775|gb|EAO32848.1| Ribonuclease E and G [Xylella fastidiosa Ann-1]
 gi|167964470|gb|ACA11480.1| ribonuclease G (cytoplasmic axial filament protein) [Xylella
           fastidiosa M12]
          Length = 497

 Score =  274 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 222/398 (55%), Gaps = 2/398 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I E++++ Q L+VQ++KE  G KGA +TT +S+  RY VL+P  SK   +S +I +  +
Sbjct: 98  PIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLP-QSKMVGVSLRIEDEAE 156

Query: 229 RKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           R  LK +   L    G  G I+RT    ++   +  D  YL RLW  V           L
Sbjct: 157 RARLKAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSL 216

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YE+ +L  R++RDL  KD+ +I V  ++ + + + F+   MP  A  +  Y   HPIF 
Sbjct: 217 LYEDLSLSLRSVRDLIRKDVEKIKVDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFD 276

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             G+E ++      ++ L S GY++I QTEA+ ++DVN+G    +  +E+T  +TNLEAA
Sbjct: 277 LYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAA 336

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + +ARQLRLR+L G+IV+DFIDM++ ++   V + L+++L +D A+ +V   S  GL+EM
Sbjct: 337 QALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTKVYDFSPLGLVEM 396

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R   S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V    +V
Sbjct: 397 TRKRTVESLQRQLSETCQECGGRGTIKTAETVTYEIFRDITRAVRQFDAVRLLVIASPNV 456

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  + +++ A + E EA  G +I          + + +
Sbjct: 457 VSRMTDEESAAVAELEAVLGKAIRFQADPHYLQEQYEV 494



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E +  + + GNIY  +V RV P +QAAFVD
Sbjct: 1  MSEEILVNVTFG-ETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGMERTAFLHVNDV 73


>gi|332520147|ref|ZP_08396611.1| ribonuclease, Rne/Rng family [Lacinutrix algicola 5H-3-7-4]
 gi|332044706|gb|EGI80900.1| ribonuclease, Rne/Rng family [Lacinutrix algicola 5H-3-7-4]
          Length = 514

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 142/564 (25%), Positives = 260/564 (46%), Gaps = 62/564 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S+ +     +L+D ++ EL  + +      G++++AK+ +  P L AAFV+
Sbjct: 1   MNKELII-RSNSDGVDFALLKDGKLIELHKDEDSNNFAVGDVFIAKIRKAVPGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P                                     I +    
Sbjct: 60  VGYEKDAFLHYHDLGP------------------------------------KISSLLKF 83

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +       +  + +E     + D    + +V   +                        
Sbjct: 84  TKSVSTGKLNDFSLKEFPFEKDIDKDGKINNVLKSNQSM--------------------- 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +++ LS+AGRY VL+P + +  +IS+KI +  ++  LK + + + 
Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYIVLVPFSDR-ISISQKIEDRAEKDRLKRLVKSI- 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G GVI+RT    +   E+ +D + L+  W  + +    +  P  V  E N     +R
Sbjct: 181 TPKGFGVIVRTVAEGKKVAELDKDLQNLLGRWTAMCKKLNKAHHPTKVLGELNKASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I+V  E  Y + KD+++ + P    IV+ ++   PIF + G+E Q+ +   
Sbjct: 241 DIFNDTFTGIVVDDEALYIQIKDYVQEIAPKKESIVKLHQSNVPIFEKFGVERQIKTAFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEAL  IDVNSG RS + +  EDTAL+ NL +A E+ARQLRLRD+
Sbjct: 301 KTVSMAKGAYLVIEHTEALHVIDVNSGNRSNKSNSQEDTALEVNLISATEVARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFID+ + +N + +   L++ +K DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDLNKAENRKKLYNHLRDEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +      G   + +   +   I + + E L +     + ++TH  +  +L     +  
Sbjct: 421 TREENPNGNGGEEVEAPIVLVQKITQQL-EQLFKKDFKKVTLNTHPFIAAFLTKGFPSIR 479

Query: 540 VEYEARFGVSINVVIGIELADKLF 563
            ++       + +          +
Sbjct: 480 SKWFFEHKKWVKIQPRDAYTYLEY 503


>gi|134093809|ref|YP_001098884.1| RNase G [Herminiimonas arsenicoxydans]
 gi|133737712|emb|CAL60757.1| RNase G (ribonuclease G) [Herminiimonas arsenicoxydans]
          Length = 487

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 205/397 (51%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I+ ++ + Q + VQ++K+  G KGA ++T +S+AGR  V +P  S      R       
Sbjct: 88  PIERILFDGQSITVQVIKDPIGTKGARLSTQISIAGRMLVYLPQESHIGISQRIENEVER 147

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
               +++ + ++     G I+RT     +  +++ D +YL + W N+ +LA    AP L+
Sbjct: 148 ELLREKVQKLMQEGEKGGFIIRTMAEDASDHDLQMDVDYLRKTWSNITQLAKTKPAPSLL 207

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           Y++ +L +R +RD    + + I V   + +++ + F +L  PS    +  Y    P+F  
Sbjct: 208 YQDLDLAQRVMRDFVNDETASIQVDSRENFQKLQQFGELYTPSVLTKLAHYPGERPLFDL 267

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            G+E ++       V L S GY+I++QTEA+ +IDVN+G        +DT  +TNLEA+ 
Sbjct: 268 YGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEASH 327

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            IARQLRLR+L G++++DFIDME  ++  +V  +L  +L +DR +V V   S  GL+EM+
Sbjct: 328 AIARQLRLRNLGGMVILDFIDMENVEHRNAVLSELNRALARDRTKVSVSGFSALGLVEMT 387

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+R R S+     + C  C G G +++  ++   ILR +     Q+      +     V+
Sbjct: 388 RKRTRESLAHILCEPCPACGGKGQVKTARTICYEILRELTREAKQFNPREFRILASQVVI 447

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              L ++   +       G  I++ +      + + +
Sbjct: 448 DMFLEEESQHLAMLGDFLGKPISLQVEAVYHQEQYDV 484


>gi|319944365|ref|ZP_08018639.1| ribonuclease G [Lautropia mirabilis ATCC 51599]
 gi|319742326|gb|EFV94739.1| ribonuclease G [Lautropia mirabilis ATCC 51599]
          Length = 508

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 119/424 (28%), Positives = 199/424 (46%), Gaps = 14/424 (3%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                     +   I++++   Q LLVQ++K+  G+KGA +TT +S+AGR  V +P+   
Sbjct: 82  DLWQCRMDGHKTTPIEKLLYPGQPLLVQVIKDPIGSKGARLTTQISIAGRMLVYLPHDPH 141

Query: 216 GETISRKITNPVDRKNLKE------IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
                R        + L+            +   G G I+RT         +  D +YL 
Sbjct: 142 IGIAQRITDETERNRLLERVKVLAAQGHDGKASEGGGFIIRTVAEGAEDEVLMADIQYLR 201

Query: 270 RLWDNVRE--------LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           R W  + E            S  P  +Y E  L +R +RD+       IIV   +     
Sbjct: 202 RRWAQILEAAQANASGKPAGSRQPEQLYHELPLSQRVLRDMAWAGTQSIIVDDPETLATM 261

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F +  MP+    +R +E    +F    ++ +++      V L S GY+I +QTEAL +
Sbjct: 262 RTFCQTYMPNLEEKLRLHEGSRSLFDLYQVDEEVERALARRVPLKSGGYLIFDQTEALTT 321

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G        +DT  +TNLEA + +ARQL+LR+L G+I+VDFIDM   ++  +V +
Sbjct: 322 IDVNTGGYISGRNFDDTVFRTNLEATQTLARQLQLRNLGGIIIVDFIDMHSAEHRETVLQ 381

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +L++DR +  V   S+ GL+EM+R+R R S+     + CT C G G I++  +V  
Sbjct: 382 SLRSALQQDRTKTTVNGFSSLGLVEMTRKRTRDSLERMLCEPCTACHGKGTIKTARTVCY 441

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            I+R +     Q+      +     V+  LL+++   +       G  I + +    A +
Sbjct: 442 EIMREIAREARQFDPKEFRILASQQVIDLLLDEESPHLAILGENVGKPITLHVEPAYAQE 501

Query: 562 LFYI 565
            + I
Sbjct: 502 DYDI 505



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++L+  +   ETRV +++   ++E + + +  +   GNIY   V RV P +Q+AF+D G
Sbjct: 13 EEILVSTTSP-ETRVALIQQGVLKEFNLDRQASRGQVGNIYAGIVNRVLPGMQSAFIDIG 71

Query: 63 GNRHGFLPFLEI 74
            R  FL   ++
Sbjct: 72 LERSAFLHVTDL 83


>gi|89256106|ref|YP_513468.1| ribonuclease E [Francisella tularensis subsp. holarctica LVS]
 gi|115314580|ref|YP_763303.1| ribonuclease E [Francisella tularensis subsp. holarctica OSU18]
 gi|167010792|ref|ZP_02275723.1| ribonuclease E [Francisella tularensis subsp. holarctica FSC200]
 gi|254367431|ref|ZP_04983457.1| ribonuclease E [Francisella tularensis subsp. holarctica 257]
 gi|254369110|ref|ZP_04985122.1| ribonuclease E [Francisella tularensis subsp. holarctica FSC022]
 gi|89143937|emb|CAJ79156.1| Ribonuclease E [Francisella tularensis subsp. holarctica LVS]
 gi|115129479|gb|ABI82666.1| ribonuclease E [Francisella tularensis subsp. holarctica OSU18]
 gi|134253247|gb|EBA52341.1| ribonuclease E [Francisella tularensis subsp. holarctica 257]
 gi|157122060|gb|EDO66200.1| ribonuclease E [Francisella tularensis subsp. holarctica FSC022]
          Length = 843

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 191/640 (29%), Positives = 318/640 (49%), Gaps = 12/640 (1%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE-AKD 323
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + +  + 
Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
            + L        V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LILLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEKGSPVQALVNTGHKVGSD-----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
            +++        N       +         +  K I  V  ++A+     S + E     
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540

Query: 619 IVSEESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
               +      K++    ++ +++       +G+ +  S      ++S            
Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                N A       +      +  E   + S++D   KK
Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNKSNNDKFDKK 640



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|320102650|ref|YP_004178241.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644]
 gi|319749932|gb|ADV61692.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644]
          Length = 1473

 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 169/479 (35%), Positives = 262/479 (54%), Gaps = 8/479 (1%)

Query: 83   FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET-------EE 135
              D     +E          V ++        P D   E    +    +         E 
Sbjct: 928  SEDDDDHDQEVEDQDHVEVEVDEERRSALARRPVDPEDEIDPELQEEIRREIEEIAVLEA 987

Query: 136  ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195
            E  +   +      ED  G        +   +  IQE+ +    ++VQ++KE  GNKG  
Sbjct: 988  EMGLRGPDGRYKRGEDRAGTVIPGSRTRGVVRPPIQEIFRRGDEVIVQVIKESIGNKGPT 1047

Query: 196  VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255
            ++TY+S+ GRY VLMP  ++   +SRKI +   R+ LKEI   L  P  +G I+RTAG  
Sbjct: 1048 LSTYISIPGRYLVLMPGLNRVG-VSRKINDEAQRRKLKEIMEELNPPNNLGFIVRTAGVD 1106

Query: 256  RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
            RTK E+ RD  YL+RLW  +      + AP ++Y+E ++I R IRD++  DI  I +   
Sbjct: 1107 RTKKELARDMAYLLRLWKAILRRIKRTQAPAVIYQESDMITRTIRDVFSDDIDTIWIDER 1166

Query: 316  KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
            + Y  A++F++ +MP Y   ++ YE   P+F   G+E ++  +H+  V LP  G +II  
Sbjct: 1167 QAYEHAREFLQNVMPRYVDRLKLYEGKTPLFHLYGLEEEIQRIHRKHVPLPGGGSIIIEP 1226

Query: 376  TEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435
            TEALV+IDVNSG    E+  E TA +TNL AA+EIARQLRLRDL G+I+ DFIDM E+K+
Sbjct: 1227 TEALVAIDVNSGNFRVENDAEKTAYETNLRAAKEIARQLRLRDLGGVIINDFIDMREEKH 1286

Query: 436  NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
             R VE+ L+E++K+DRAR +V  +S FG++EM+RQRIR S+  S  + C +C+G G I++
Sbjct: 1287 RRGVERALREAIKRDRARTKVLRMSQFGIIEMTRQRIRPSLKRSVYQDCPHCQGTGLIKT 1346

Query: 496  QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
              S+++ ++R +     +     +++   +    YL N+KR  I + E    ++I +  
Sbjct: 1347 PESLSIEVMRLLALAAHRPEVRRLVLTVSTPTAEYLANKKRKEIAQLEIEGNLTIEIRA 1405



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 45/78 (57%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+    EE R+ V+ +  +EEL  E    +   GNIY  +V  +EP  QAAFVD+ 
Sbjct: 7  KEMLINVLQSEECRIAVVENGVLEELYVERASHENYTGNIYKGRVVNIEPGFQAAFVDFS 66

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            R+GFL   ++ P Y+Q
Sbjct: 67 VGRNGFLHVSDVDPQYFQ 84


>gi|156502124|ref|YP_001428189.1| ribonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|290954510|ref|ZP_06559131.1| ribonuclease E [Francisella tularensis subsp. holarctica URFT1]
 gi|295312026|ref|ZP_06802841.1| ribonuclease E [Francisella tularensis subsp. holarctica URFT1]
 gi|156252727|gb|ABU61233.1| Ribonuclease, rne/rng family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 843

 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 191/640 (29%), Positives = 318/640 (49%), Gaps = 12/640 (1%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE-AKD 323
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + +  + 
Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
            + L        V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LILLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEKGSPVQALVNTGHKVGSD-----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
            +++        N       +         +  K I  V  ++A+     S + E     
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540

Query: 619 IVSEESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
               +      K++    ++ +++       +G+ +  S      ++S            
Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                N A       +      +  E   + S++D   KK
Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNKSNNDKFDKK 640



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|302772292|ref|XP_002969564.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii]
 gi|300163040|gb|EFJ29652.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii]
          Length = 517

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 139/517 (26%), Positives = 238/517 (46%), Gaps = 42/517 (8%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++ I++S     R+ ++ + ++ +L  E  +     GN+YL  V ++ P +   FV+ G 
Sbjct: 8   EIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVEIGS 67

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           +R   L    +H  Y  + + D+             +E        G V   N+  +EE 
Sbjct: 68  SRTALLEVN-MH-QYPHVFYGDK----------AQGNEEDGLRNKDGIVIDVNEEEIEET 115

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
               N  +  + +   +                    P    R+      +K   +++VQ
Sbjct: 116 VDDPNGEEMEQSDGKTN------------------VKPATVLRKIGAWRKVKRGTLMVVQ 157

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KE    KG  +T  ++LAGRY VL+P  S      +        ++  +       P 
Sbjct: 158 VKKEALRQKGPQLTATVALAGRYWVLVPQVSTIGVTRKINGLE---RSRLKQLARELQPP 214

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL-------NSVAPHLVYEEGNLIK 296
           G G+ +RT    R++ E+++D   LM  W ++ E A            P L+        
Sbjct: 215 GFGLTVRTEAVGRSREELEKDLARLMETWRSILERAEVAAAAGGKDPVPVLLQRAMGQTL 274

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R +RDL+  ++   +V   + Y+E   +++ + P     V  Y    PIF    +E +++
Sbjct: 275 RTVRDLFNNEVERFVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIE 334

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQL 414
                 V LP+  Y+++ +TEALVSIDVN G           +  L+ NL AA +IA +L
Sbjct: 335 KSSSKRVELPNGAYLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATEL 394

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRD+ G+IVVDFIDME+  + R V +++++++++DR++V +  IS FGL+EM+R R R 
Sbjct: 395 RLRDIGGIIVVDFIDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRARDRP 454

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           SV    T  C+ C G G I S       I R+V++ L
Sbjct: 455 SVTSRVTDSCSCCGGTGRIESVEMALSKIERAVKKIL 491


>gi|302774831|ref|XP_002970832.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii]
 gi|300161543|gb|EFJ28158.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii]
          Length = 516

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 139/517 (26%), Positives = 238/517 (46%), Gaps = 42/517 (8%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++ I++S     R+ ++ + ++ +L  E  +     GN+YL  V ++ P +   FV+ G 
Sbjct: 8   EIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVEIGS 67

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           +R   L    +H  Y  + + D+             +E        G V   N+  +EE 
Sbjct: 68  SRTALLEVN-MH-QYPHVFYGDK----------AQGNEEDGLRNKDGIVIDVNEEEIEET 115

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
               N  +  + +   +                    P    R+      +K   +++VQ
Sbjct: 116 VDDPNGEEMEQSDGKTNVK------------------PATVLRKIGAWRKVKRGTLMVVQ 157

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KE    KG  +T  ++LAGRY VL+P  S      +        ++  +       P 
Sbjct: 158 VKKEALRQKGPQLTATVALAGRYWVLVPQVSTIGVTRKINGLE---RSRLKQLARELQPP 214

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL-------NSVAPHLVYEEGNLIK 296
           G G+ +RT    R++ E+++D   LM  W ++ E A            P L+        
Sbjct: 215 GFGLTVRTEAVGRSREELEKDLARLMETWKSILERAEVAAAAGGKDPVPVLLQRAMGQTL 274

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R +RDL+  ++   +V   + Y+E   +++ + P     V  Y    PIF    +E +++
Sbjct: 275 RTVRDLFNNEVERFVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIE 334

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQL 414
                 V LP+  Y+++ +TEALVSIDVN G           +  L+ NL AA +IA +L
Sbjct: 335 KSSSKRVELPNGAYLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATEL 394

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRD+ G+IVVDFIDME+  + R V +++++++++DR++V +  IS FGL+EM+R R R 
Sbjct: 395 RLRDIGGIIVVDFIDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRARDRP 454

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           SV    T  C+ C G G I S       I R+V++ L
Sbjct: 455 SVTSRVTDSCSCCGGTGRIESVEMTLSKIERAVKKIL 491


>gi|114319570|ref|YP_741253.1| ribonuclease G [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225964|gb|ABI55763.1| RNAse G [Alkalilimnicola ehrlichii MLHE-1]
          Length = 492

 Score =  273 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 128/406 (31%), Positives = 217/406 (53%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P        I E++   Q ++VQ++K+  G+KGA +TT++++  RY VL P +      
Sbjct: 84  EPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARLTTHITIPSRYLVLAPGSRALGVS 143

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           +R        +        L     MG+I+RTA     +  ++ DF++L+RLW ++ E A
Sbjct: 144 ARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQVAEEALRADFDFLLRLWQSISERA 203

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
            ++ A   V+E+  L  RA+RDL   ++  + V   + Y     F +  +P  A  V  Y
Sbjct: 204 AHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSRENYLNVVSFCRRFLPEMAPRVEYY 263

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S G+++I+QTEA+ ++DVN+G       +E+T 
Sbjct: 264 PGERPLFDLYNIEDEILRALNRRVPLKSGGHLVIDQTEAMTTVDVNTGAYVGHRTLEETI 323

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA+ IARQLRLR+L G+I+VDFIDM E+++ R V + L+++L+KD A+ Q+  +
Sbjct: 324 FKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEEEHKRQVLRALEKALQKDHAKTQISGV 383

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C G G ++S  +V+  I R +     Q+ +  +
Sbjct: 384 SALGLVEMTRKRTRESLEHQLCESCPTCGGRGSVKSAETVSYEIFREILREARQFESRRL 443

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +V   ++VV  LL  +  ++ + E   G  I +        + F +
Sbjct: 444 VVLAATEVVDLLLEDESTSLAQLEEFIGRPIELQAESLYTQEQFDV 489


>gi|260219510|emb|CBA26355.1| Ribonuclease G [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 491

 Score =  273 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 208/399 (52%), Gaps = 2/399 (0%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           Q  I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  T  
Sbjct: 92  QIPIEKQVFEGQSLMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDDHIGVSQKIPT-- 149

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             R  L+   + L    G G ILRT G   +  E+  D  YL + W  +++ +L      
Sbjct: 150 AQRDELRSRMQALAGKEGGGFILRTNGEDASDKELGDDIAYLRKAWARIKDASLRLPPQS 209

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L++++ NL++R +RDL  +    I V   + +   K F    MP+ A  ++ Y+   PIF
Sbjct: 210 LLHQDLNLLQRVLRDLVGETTQTIRVDSREQFDALKTFGAEFMPAAAEKLQHYKGERPIF 269

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I+ ++       V L S GY+I++QTEAL ++DVN+G        +DT  +TNLEA
Sbjct: 270 DLYSIDEEIAKALARRVELKSGGYLIVDQTEALTTVDVNTGGFVGARNFDDTIFKTNLEA 329

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+ IARQLRLR+L G+I+VDFIDM  + +  +V  + ++ L +DR +   G  S  GL+E
Sbjct: 330 AQAIARQLRLRNLGGIIIVDFIDMAREDHREAVLAEFRKQLGRDRVKTMAGGFSQLGLVE 389

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C  C+G G +++  SVA  ILR +     Q+T     V     
Sbjct: 390 MTRKRTRESLAHMLCEPCPTCEGKGIVKTPRSVAYDILREILREARQFTPREFRVVASPK 449

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+  LL+++   +       G  +++     +A + + I
Sbjct: 450 VIELLLDEESQHLAGLSEFIGKPVSLQSEAAMAQEQYDI 488



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV ++    V+EL  E   ++ + GN+YL KV RV P +Q+AF+D
Sbjct: 1  MQQDILINWS-PQETRVAIVEHGAVQELHVERTLERGLVGNVYLGKVARVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   ++ HP
Sbjct: 60 IGLERAAFLHVADVWHP 76


>gi|110640055|ref|YP_680265.1| ribonuclease G [Cytophaga hutchinsonii ATCC 33406]
 gi|110282736|gb|ABG60922.1| ribonuclease G [Cytophaga hutchinsonii ATCC 33406]
          Length = 535

 Score =  273 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 139/589 (23%), Positives = 248/589 (42%), Gaps = 62/589 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+N++ I +S   + R+ ++++ R+ E  FE   +K   G+IYL  V +V P L AAF+D
Sbjct: 1   MSNELFISSSQSGD-RIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P    +    + A+   S  A      +       +  I  D  +
Sbjct: 60  VGYEKDAFLHYFDLGPKIKSLTKFTKNAITSASTPALLKKFEL-------EAEIKKDGKV 112

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +V    N       +  IS     +S    + G     VP         +   K  +  
Sbjct: 113 SQVLEKGNPILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSNVVSVSKKITDKEERQR 172

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LV+++   R                             I R + +  +   L +  R L 
Sbjct: 173 LVRLISSIRP-----------------------ENFGVIIRTVASNKEVAELDKDLRNLV 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                G+ +                                +    L+  E +     +R
Sbjct: 210 KTWEDGIAI-----------------------------LKKARPRDLIIGELDRTSSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +    I V  ++ Y + + ++K + P   R+V+ ++    +F  +G+E QL +L  
Sbjct: 241 DMLNESFDSINVDTKELYDDLRSYIKNIAPDKERLVKLHQGKTKMFESTGVEKQLKTLFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V+L   GY+II  TEAL  IDVNSG +S  E   E+TAL TNLEA  E+ARQLRLRD+
Sbjct: 301 KSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM+   N + + +++K  +K DR++  +  +S FGL++++R+R+R      
Sbjct: 361 GGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQTNLI 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +VC  C G G I +  ++   I   ++  + +    NI +  H  +  Y      +  
Sbjct: 421 TMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQNEKNITLVLHPYIYAYFTTGYISKR 480

Query: 540 VEYEARFGVSINVVIGIELADKLFY-IEKGSPVQALVNTGHKVGSDSQA 587
            ++  ++   + +     L    F  +++G+    + +        S+ 
Sbjct: 481 TKWFFKYFRWVKLRTDSSLGLTEFKFLDEGAQNIDMESEATTEDYRSEE 529


>gi|15837727|ref|NP_298415.1| ribonuclease G [Xylella fastidiosa 9a5c]
 gi|9106085|gb|AAF83935.1|AE003948_7 ribonuclease G [Xylella fastidiosa 9a5c]
          Length = 497

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 220/398 (55%), Gaps = 2/398 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I E++++ Q L+VQ++KE  G KGA +TT +S+  RY VL+P  SK   +S +I +  +
Sbjct: 98  PIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLP-QSKMVGVSLRIEDEAE 156

Query: 229 RKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           R  LK +   L    G  G I+RT    ++   +  D  YL RLW  V           L
Sbjct: 157 RARLKAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSL 216

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YE+ +L  R++RDL  KD+ +I V  ++ + + + F+   MP  A  +  Y   HPIF 
Sbjct: 217 LYEDLSLSLRSVRDLIRKDVEKIKVDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFD 276

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             G+E ++      ++ L S GY++I QTEA+ ++DVN+G    +  +E+T  +TNLEAA
Sbjct: 277 LYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAA 336

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + +ARQLRLR+L G+IV+DFIDM++ ++   V + L+++L +D A+  +   S  GL+EM
Sbjct: 337 QALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTTLYDFSPLGLVEM 396

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R   S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V    +V
Sbjct: 397 TRKRTVESLQRQLSETCQECGGRGTIKTAETVTYEIFRDITRAVRQFDAVRLLVIASPNV 456

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  + ++  A + E EA  G +I          + + +
Sbjct: 457 VSRMTDEDSAAVAELEAVLGKAIRFQADPHYLQEQYEV 494



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E +  + + GNIY  +V RV P +QAAFVD
Sbjct: 1  MSEEILVNVTFG-ETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGMERTAFLHVNDV 73


>gi|85859580|ref|YP_461782.1| ribonuclease E [Syntrophus aciditrophicus SB]
 gi|85722671|gb|ABC77614.1| ribonuclease E [Syntrophus aciditrophicus SB]
          Length = 630

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 187/547 (34%), Positives = 291/547 (53%), Gaps = 18/547 (3%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K  Q ++VQ+ +E  G KGA +TTYLSL GRY VL+PN      ISRKI    DR+ LK 
Sbjct: 97  KIGQEVIVQVAREVSGRKGALLTTYLSLPGRYLVLLPNK-HSSGISRKIEAEEDRRLLKT 155

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +   +++  GMG I+RTAG +RTK E+ RD+++L+RLW  +++ A    AP L+Y+E + 
Sbjct: 156 LVEQIKIDEGMGFIVRTAGINRTKQELSRDYQHLLRLWKEIQKRAETDPAPALIYQESDF 215

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             R++RD +  +I EI+V   + YR+ + + K + P   R+++QY++  PIF +  +E Q
Sbjct: 216 GVRSLRDYFTSEIEEILVDDLETYRKMRAYCKAVAPRNLRMIKQYKERLPIFSQYNLEEQ 275

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           +  ++Q  V L S G ++I+ TEA+++IDVNSGR++ +  +EDTA +TNLEAAEEI RQL
Sbjct: 276 IREIYQERVELKSGGSIVISPTEAMITIDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQL 335

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRDL GLIV+DFIDM ++K+   VEK  K++L  DRAR+Q+  IS FG+LE+SRQ+  S
Sbjct: 336 RLRDLGGLIVIDFIDMTDRKHEAEVEKTFKKALTLDRARIQMSRISKFGILELSRQKKHS 395

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           ++ E +   C +C G+G   S    ALS  R +E    +  A+ + +    ++  YLLNQ
Sbjct: 396 TIQEISYTTCPFCSGSGIRPSLEYTALSAFRKIETEAAKEKANALKISVPYEIADYLLNQ 455

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
           KR  I   E  + +SI++    ++      I   +     + T     ++ + PS     
Sbjct: 456 KRTDIQRIETLYDLSIHISGKADMTWDHAAISAVA---RELATETPETAEEEKPSLPVEA 512

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
               + E        ES+E    +   EE                PAT+           
Sbjct: 513 LRGQELEPAASGNAGESVETASGSGGPEEL--------------LPATELAKKKSRRRPR 558

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             +   ++  +    PS     +              +S PPV T E    +    P+ +
Sbjct: 559 KRRRKSEEKVEAAAAPSLPEGMDESPISPEQDVFGEILSYPPVITQESVEEHPVLSPVSQ 618

Query: 715 KTRWWKR 721
           ++   K 
Sbjct: 619 ESDNRKE 625



 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 50/79 (63%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M + MLI+A H E+ R+ ++ D ++ E + +   ++ I GNIY   V +VE  LQAAFV+
Sbjct: 1  MKHIMLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVN 60

Query: 61 YGGNRHGFLPFLEIHPDYY 79
          +G  + GFLP  ++ P Y+
Sbjct: 61 FGVGKDGFLPLRDVSPAYF 79


>gi|167627660|ref|YP_001678160.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597661|gb|ABZ87659.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 890

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 189/632 (29%), Positives = 307/632 (48%), Gaps = 4/632 (0%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S  ++    A  D+    D+ I N    ++ A I        E S+ +   N  
Sbjct: 2   KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EDKNGFLPFKEVSEYYLKDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN   G  ISR++      K LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPDGGGISRRVEGEDREK-LKKYLKDLNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LWD++ +       P L+++E ++I R +RD   +D+ EIIV  ++ Y + K  
Sbjct: 181 FDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDVKRQ 240

Query: 325 MKL-LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + L         V+ Y +  PIF + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++D+AR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C G G+I++  + AL+I
Sbjct: 361 MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF 480

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +++        N       +                   L  P SE            E
Sbjct: 481 QMQRIWGTSYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKPISEDQSVSPKEDNKLE 540

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +  +    +    +     +    G  S +       ++   +  +      +N  +   
Sbjct: 541 NKNIETTVQNNTNKTSEKQEPKKKGFFSKLLDKLTGSNEVIAVENKKPQNKQYNNKDKAQ 600

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                  +     ++  +   +N++     K 
Sbjct: 601 KPQKSQDNRPQKDINQRDDRKANNNDRSDNKN 632



 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K+LI++   EETR+  L + ++ +LD E+  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +++GFLPF E+  +YY
Sbjct: 62 EDKNGFLPFKEV-SEYY 77


>gi|152980616|ref|YP_001352227.1| ribonuclease G (RNAse G) (cytoplasmic axial filament protein)
           [Janthinobacterium sp. Marseille]
 gi|151280693|gb|ABR89103.1| ribonuclease G (RNAse G) (cytoplasmic axial filament protein)
           [Janthinobacterium sp. Marseille]
          Length = 487

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 202/410 (49%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                         I+ V+ + Q + VQ++K+  G KGA ++T +S+AGR  V +P  S 
Sbjct: 75  DARSHEGPPSSPTPIERVLYDGQAVTVQVIKDPIGTKGARLSTQISIAGRMLVYLPQESH 134

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R           +++ + +      G I+RT     +  +++ D EYL + W N+
Sbjct: 135 IGISQRIENEVEREILREKVQKLILPEEKGGFIIRTMAEDASDGDLQADVEYLRKTWANI 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
            + A    AP L+Y++ +L +R +RD    + + I V   + Y++   F +L  PS    
Sbjct: 195 TQQAKTKPAPTLLYQDLDLAQRVMRDFVNDETASIQVDSRENYQKLLQFGELYTPSVLSK 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F   G+E ++       V L S GY+I++QTEA+ +IDVN+G        
Sbjct: 255 LAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNF 314

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEA+  IARQLRLR+L G++++DFIDME  ++  +V  +L  +L +DR +V 
Sbjct: 315 DDTIFKTNLEASHAIARQLRLRNLGGIMILDFIDMENPEHKSAVLNELNRALSRDRTKVS 374

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   S  GL+EM+R+R R S+     + C  C G G +++  ++   ILR +     Q+ 
Sbjct: 375 VSGFSALGLVEMTRKRTRESLAHILCEPCPACSGKGQVKTARTICYEILRELTREAKQFN 434

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +     V+   L ++   +       G  I++ +      + + +
Sbjct: 435 PREFRILASQVVIDMFLEEESQHLAMLGDFLGKPISLQVETVYHQEQYDV 484


>gi|302342415|ref|YP_003806944.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
 gi|301639028|gb|ADK84350.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
          Length = 636

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 172/512 (33%), Positives = 277/512 (54%), Gaps = 1/512 (0%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
              +    IQEV++    LLVQ+VKEE   KGA++TT+ S+ G+Y VL P       +SR
Sbjct: 84  HNGRVNKPIQEVLRAGHELLVQVVKEETATKGASLTTFFSIPGQYMVLTPGHESQG-VSR 142

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +R+ +KE   G   P G+GVI RTA   R+K EI+++ + L+RLW ++++   +
Sbjct: 143 KIESEAERERIKEALAGASCPEGIGVIARTAAEGRSKREIQQNLQQLLRLWLDIKKRGDS 202

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
           +    L++ E  L  R +RD +  D++EI+V  +  +   + ++ ++ P     ++ Y D
Sbjct: 203 AKPRTLIHREEELAVRVVRDHFTSDVTEILVDDQDVFNRLQRYLAVVSPRRKTQLKLYTD 262

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
           P PIF +S +E Q+ S++Q  V LPS G ++I+ TEALVSIDVNSGR+     IE+TAL 
Sbjct: 263 PRPIFQKSQLEQQILSIYQPTVPLPSGGSIVIHPTEALVSIDVNSGRNVSGKQIEETALN 322

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            N EAA E+ARQLRLRDL GL+VVDFIDM ++ N R+V K   + LKKD+A++ +GAIS 
Sbjct: 323 VNKEAAVEVARQLRLRDLGGLVVVDFIDMRDRANQRTVRKVFADELKKDKAKITIGAISR 382

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGLLE+SRQRIR  +    T VC +C+G G +R+  ++   ++R++E  L       + V
Sbjct: 383 FGLLELSRQRIRPPIDFGATMVCPHCQGRGLVRTTEAIGRGVMRALEHKLGDGDKSGLRV 442

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
              ++   YL N +RA ++  E R+G+ I V+    L+ +   +E+              
Sbjct: 443 RVGTEAANYLQNVRRADLMRLEERYGLCIEVLADPGLSPEESRMERFEATWTPPQPAAPP 502

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
              +   + ++     ++++        E+    +    S        +R+  ++     
Sbjct: 503 VLQAVIEAPEEPEPEEFEEDEADGEGAVEAAAADEPAKKSSSRRRRGGRRKSAKKDAIAP 562

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                AG    V +   V     +   EP+  
Sbjct: 563 AAQPQAGPAPSVEAKSIVETPVAEQSGEPTAA 594


>gi|118581418|ref|YP_902668.1| ribonuclease [Pelobacter propionicus DSM 2379]
 gi|118504128|gb|ABL00611.1| RNAse E [Pelobacter propionicus DSM 2379]
          Length = 866

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 192/613 (31%), Positives = 307/613 (50%), Gaps = 5/613 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++ +  + + + E    + T G++       +E     A       +   +  
Sbjct: 16  PEEARVAIVHDGRLMELNIEISGKEQTKGNIYKGVVLRVEPGLQAAFVDIGRPKPGFLQ- 74

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
             ++  +    +   PE+  K   R+  IQEV++  Q L+VQ+ K+ER NKG+A+T+YLS
Sbjct: 75  MGELHPDFWQWRDDVPEEQRK---RRPRIQEVLRRGQELVVQVEKDERDNKGSALTSYLS 131

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP +     ISRK+     RK LKEI  G+ +P G+G I+RT    RT  E+
Sbjct: 132 LPGRYMVLMPGSDSSG-ISRKVEQESVRKQLKEIMAGMSIPEGIGYIVRTQAVGRTPEEL 190

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D E L+ +++ +++ A        +Y +  LI R IRD +  DI E++V  ++ + EA
Sbjct: 191 QKDMENLLAMYEGIKKSATEIKGAGEIYRDKGLIIRFIRDYFSDDIDEVVVDSKEAFNEA 250

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           +DF +  MP   ++V+ +++  P+F R  IE Q+D +++  V+LPS G +II  TEALVS
Sbjct: 251 RDFFRETMPGCEKLVKLHKEKRPVFSRFQIEEQIDQIYEKRVSLPSGGSLIIEPTEALVS 310

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+S+ E  IEDTA +TN+EAAEE+ARQLRLRDL GLI++DFIDM ++K+N  VEK
Sbjct: 311 IDVNSGKSSGERGIEDTAFKTNMEAAEEVARQLRLRDLGGLIMIDFIDMRDRKHNHEVEK 370

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK++LK D+ARV +G IS FG+LEMSRQRI  ++ ++    C +C+G G ++S  ++AL
Sbjct: 371 TLKQALKMDKARVNLGRISEFGILEMSRQRIAKTLNDAIHLACPHCEGRGKVKSVEAMAL 430

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           S LR V     +     +      +V  YLLN+K+  + + E  + + + V         
Sbjct: 431 SFLRKVHGAAAKGNVCEVHGGLPLEVAYYLLNRKKRELAQIENDYDIEVTVKGKTSFLLN 490

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              +E     +       +  +D+   +                 P  E+          
Sbjct: 491 QMELEIVKREKKRPEEPARDDADNGEATQPALAVETVAAVPQEGEPSPENGATEGGKKRK 550

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
                            +   +        +    Q   + +     E  ++      E 
Sbjct: 551 RRRKKKKSATEGTAIPGQTEAESATEQSEEEHPLDQAPGEPTAARQAEEHEVPGAPAEEQ 610

Query: 682 GAHGFTENYDVSI 694
                TE  +   
Sbjct: 611 TDEVTTEPTEEGE 623



 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 116/750 (15%), Positives = 213/750 (28%), Gaps = 89/750 (11%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           + KMLI+  H EE RV ++ D R+ EL+ E   K+Q KGNIY   V RVEP LQAAFVD 
Sbjct: 6   SKKMLINVMHPEEARVAIVHDGRLMELNIEISGKEQTKGNIYKGVVLRVEPGLQAAFVDI 65

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G  + GFL   E+HPD++Q     R  + +E    +   + V        V +  D    
Sbjct: 66  GRPKPGFLQMGELHPDFWQW----RDDVPEEQRKRRPRIQEVLRRGQELVVQVEKDERDN 121

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
           + + + ++        ++   +D       V+  S     K+      I          +
Sbjct: 122 KGSALTSYLSLPGRYMVLMPGSDSSGISRKVEQESVRKQLKEIMAGMSI----PEGIGYI 177

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241
           V+          A   T   L      L+      +  + +I    +    K +      
Sbjct: 178 VRTQ--------AVGRTPEELQKDMENLLAMYEGIKKSATEIKGAGEIYRDKGLI----- 224

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL-NSVAPHLVYEEGNLIKRAIR 300
                  +R   +      +    E      D  RE          L  E+  +  R   
Sbjct: 225 ----IRFIRDYFSDDIDEVVVDSKEAFNEARDFFRETMPGCEKLVKLHKEKRPVFSRFQI 280

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           +     I E  VS   G     +  + L+       +   +           ++      
Sbjct: 281 EEQIDQIYEKRVSLPSGGSLIIEPTEALVSIDVNSGKSSGERGIEDTAFKTNMEAAEEVA 340

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            ++ L   G         L+ ID       R+        +T  +A +    ++ L  ++
Sbjct: 341 RQLRLRDLG--------GLIMIDF---IDMRDRKHNHEVEKTLKQALKMDKARVNLGRIS 389

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
              +++   M  ++  +++   +  +      R +V ++    L    R+   ++   + 
Sbjct: 390 EFGILE---MSRQRIAKTLNDAIHLACPHCEGRGKVKSVEAMAL-SFLRKVHGAA---AK 442

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
             VC    G             + R   E       ++I V         L   +   + 
Sbjct: 443 GNVCEVHGG----LPLEVAYYLLNRKKRELAQIENDYDIEVTVKGKTSFLLNQMELEIVK 498

Query: 541 EYEARFGVSINVVIGI-ELADKLFYIEKGSPVQAL------------------------- 574
             + R            E       +E  + V                            
Sbjct: 499 REKKRPEEPARDDADNGEATQPALAVETVAAVPQEGEPSPENGATEGGKKRKRRRKKKKS 558

Query: 575 -----------VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
                              S+ + P      E     +A          E+  D + +E 
Sbjct: 559 ATEGTAIPGQTEAESATEQSEEEHPLDQAPGEPTAARQAEEHEVPGAPAEEQTDEVTTEP 618

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +             ++               S      D      EP ++    L     
Sbjct: 619 TEEGEAAAAP----KKRRRRRSRKVSKGAEESATAEESDETASAAEPLEVAPAELAAPAE 674

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
               E          T  +E+ +  S P  
Sbjct: 675 PPAGETATEQPQAPETVPLETRSFESGPQE 704


>gi|120554794|ref|YP_959145.1| ribonuclease [Marinobacter aquaeolei VT8]
 gi|120324643|gb|ABM18958.1| RNAse E [Marinobacter aquaeolei VT8]
          Length = 1056

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 206/611 (33%), Positives = 313/611 (51%), Gaps = 41/611 (6%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++     +  P + + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL
Sbjct: 71  KEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVL 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE   G++VP  MG+I+RTAG  RT  E++ D +YL+
Sbjct: 131 MPNNPRAGGISRRIEGDDRAQ-LKEAMNGVQVPKSMGIIVRTAGIGRTTEELQWDLDYLV 189

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + W+ + + A    AP L+++E N+I RA+RD   +DI E+++  +  Y +   F++ +M
Sbjct: 190 QFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYEDVLSFVRAVM 249

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P++   ++ Y+D  P+F R  IE Q+++  Q EV LPS G ++I+ TEALVSID+NS R+
Sbjct: 250 PTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRA 309

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           T+   IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   K+ R VE+K++E+L+ 
Sbjct: 310 TKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEL 369

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRARVQVG IS FGLLEMSRQR+R S+ E+ ++VC  C+G G IR   S+ALSI+R + E
Sbjct: 370 DRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYE 429

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +       V  +LLN+KR  + + EAR GV++ V     +    F I +  
Sbjct: 430 ESSKEKTAEVRAMVPVSVATFLLNEKRKQLADIEARQGVAVVVAPVPNMETPHFEILRLR 489

Query: 570 PVQALVNTGHKVGSDSQ--------APSYDKNIECVWQDEALLPIPKSESLEDI------ 615
             +             Q        A       + V +  A+  I  S            
Sbjct: 490 QDETSPEHVSSHQVAQQYSEREEEAAVEVASAEKPVREQAAVKAIRPSAPAPAPTAAAPT 549

Query: 616 ---------------------QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
                                +     +E++    + R   RR +   D   + V  D  
Sbjct: 550 AAAEQEEGLFRKLGKKIACFFRGEEPEQEASHDTNRNRSEERRNQARQDRRKSRVARDDQ 609

Query: 655 SIQNVIDDSFDMYMEPS-----DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                   S             +   +           E    +         +S  + +
Sbjct: 610 RTGGNRSGSDRRQGSQQNRGDDNRGRNRGGRGDDQNRGERGGQNRSNRDDRSGDSKGNDN 669

Query: 710 DPIVKKTRWWK 720
               +K    +
Sbjct: 670 RRDNRKDSQGR 680



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 57/78 (73%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+H EE RV ++   R+ +LD ES  ++Q K NIY  ++TRVEPSL+AAFVD+G
Sbjct: 2  KRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFVDFG 61

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            RHGFLP  EI  +Y++
Sbjct: 62 AERHGFLPLKEISKEYFK 79



 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 28/151 (18%), Gaps = 1/151 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +  N   +                    +      + +  +    N          
Sbjct: 660 RSGDSKGNDNRRDNRKDSQGRGQNRNRPQRDQKGPQDNREQQESQKGPSNDKQGGDDKQR 719

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           + RR+R R   PA               +    D+                        E
Sbjct: 720 KPRRQRNRDGSPAETPASTPAERKAERSEKHQKDTQPEKAADKTAPVDAKASEPRVDKAE 779

Query: 689 NYDVSIPPVST-PEMESSNSSSDPIVKKTRW 718
               + P   T PE             +T+ 
Sbjct: 780 QPAATTPETKTAPESRKPEQQEMAEKPETKT 810



 Score = 37.6 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 47/148 (31%), Gaps = 2/148 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               ++  + G+    D++  S  +                +   ++ Q    +++  G 
Sbjct: 656 NRDDRSGDSKGNDNRRDNRKDSQGRGQNRNRPQRDQKGPQDNREQQESQKGPSNDKQGGD 715

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            ++R+ RR+R R  +              +       D   E +      +    +    
Sbjct: 716 DKQRKPRRQRNRDGSPAETPASTPAERKAERSEKHQKDTQPEKAADKTAPVDAKASEPRV 775

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           +      P  +TPE +++  S  P  ++
Sbjct: 776 DK--AEQPAATTPETKTAPESRKPEQQE 801


>gi|222055040|ref|YP_002537402.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32]
 gi|221564329|gb|ACM20301.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32]
          Length = 777

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 192/502 (38%), Positives = 293/502 (58%), Gaps = 5/502 (0%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R A++++ ++ + D E    + T G+V       +E     A F     ++       ++
Sbjct: 16  RVAIVEDGHLVELDIEIAGSEQTRGNVYKGVVVRVE-PGLQAAFVDIGHKKLGFLQMGEI 74

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
                  +   PE+      R+  IQE+++  Q L+VQ+ K ER NKGAA+TTY+SL GR
Sbjct: 75  HPENWQWRDDVPEEQRN---RRPRIQEILRRGQELIVQVEKGERDNKGAALTTYISLPGR 131

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMP  S    ISRK+ +  +RK LKE+   LE+P G+G I+RT    RTK E+ +D 
Sbjct: 132 YMVLMPG-SDSAGISRKVESESERKKLKEMVADLEIPEGIGYIMRTEAMGRTKTELAKDL 190

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           +YL++L+ ++RE         L+Y+E +L+ R IRD +  +I E++V  +  Y++A+ F 
Sbjct: 191 QYLVKLYSSIREKGAELKGAGLIYQESDLVIRTIRDYFNAEIDEVLVDSKDVYKQARAFF 250

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           K  MP Y ++V+ +++  PIF R  +E Q+D +++ +V L S G + I  TEALVSIDVN
Sbjct: 251 KETMPKYEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVSIDVN 310

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           SG+ST E  +EDTA +TNLEAA E ARQLRLRDL GLIV+DFIDM E+K+N  VEK LK 
Sbjct: 311 SGKSTGEKGVEDTAFKTNLEAAAEAARQLRLRDLGGLIVIDFIDMRERKHNNEVEKALKT 370

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           +LK D+ARV VG IS FGLLEMSRQRI+ ++ ++++  C +C+G G ++S  ++A+S LR
Sbjct: 371 ALKGDKARVTVGKISQFGLLEMSRQRIKQTINQASSLECPHCEGRGKVKSVEAMAVSFLR 430

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     + T   +      +V  +LLN+K+  + + E  + + + V            +
Sbjct: 431 KVHAAAAKGTVAEVRGGLPLEVAYFLLNRKKRELAQIETDYDLDVTVKGKPSFLLNQIEL 490

Query: 566 EKGSPVQALVNTGHKVGSDSQA 587
           E     +            ++A
Sbjct: 491 ELIKREKPFTEEIAPEVPTTEA 512


>gi|222110912|ref|YP_002553176.1| Rne/Rng family ribonuclease [Acidovorax ebreus TPSY]
 gi|221730356|gb|ACM33176.1| ribonuclease, Rne/Rng family [Acidovorax ebreus TPSY]
          Length = 495

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 129/424 (30%), Positives = 209/424 (49%), Gaps = 2/424 (0%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V       +GG      +K +    I++ I   Q L+VQ++K+  G+KGA ++T +S+A
Sbjct: 69  HVADVWHRQEGGEAPMFARKNEPPVPIEKQIFEGQALMVQVIKDPIGSKGARLSTQISIA 128

Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           GR  V +P         +         R  L+++       +  G ILRT G   +  E+
Sbjct: 129 GRLLVFLPQDDHVGVSQKIPQAERDALRTRLQKLVDDQASGSSGGFILRTNGEDASDEEL 188

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             D  YL + W  +R+ AL      L+Y++ +L++R +RDL  +    I +   + +   
Sbjct: 189 AEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRIDSREQFVAL 248

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F    MP+ A  ++ Y+   PIF    I+ ++       V L S GY+I++QTEAL +
Sbjct: 249 KAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIVDQTEALTT 308

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G        +DT  +TNLEAA  IARQLRLR+L G+++ DFIDM  + +  +V  
Sbjct: 309 IDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAVLA 368

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           + ++ L +DR +  VG  S  GL+EM+R+R R S+     + C  C+GAG +++  SV  
Sbjct: 369 EFRKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCQGAGQVKTARSVCY 428

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR V     Q+      V     VV   L+++   +       G  I++     +   
Sbjct: 429 DILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQAESAMGQA 488

Query: 562 LFYI 565
            + I
Sbjct: 489 QYDI 492



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV V+ +  V+EL  E   ++ + GN+YL KV+RV P +Q+AF+D
Sbjct: 1  MQQDILINWS-PQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 IGLERAAFLHVADV 73


>gi|89093938|ref|ZP_01166883.1| cytoplasmic axial filament protein [Oceanospirillum sp. MED92]
 gi|89081824|gb|EAR61051.1| cytoplasmic axial filament protein [Oceanospirillum sp. MED92]
          Length = 488

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 220/417 (52%), Gaps = 2/417 (0%)

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
            V+   P++   + K    I +V++  Q LLVQ+ K+  G KGA +TT+LSL  RY V M
Sbjct: 69  HVEEVLPQNASHEEKNNTSIAQVLREGQALLVQVTKDPIGTKGARLTTHLSLPSRYLVCM 128

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM--GVILRTAGASRTKIEIKRDFEYL 268
              S      R        +    +   ++   G   G ILRT      + E+K D ++L
Sbjct: 129 LGNSHVGVSQRIEDLEERDRLRNIVHSLIKEEDGEPAGFILRTVAEGAAEAELKADIQFL 188

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            RLW +++E    + AP +VYE+  L  RA+RD+    +  I +   + +++A+ F++ L
Sbjct: 189 RRLWASIKEKISTAKAPSIVYEDLPLNMRALRDMAHSGLERIRIDSRETFQKAEAFVRDL 248

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           +P     +  Y    PIF    +E ++      +V L S GY+I +QTEA+ ++DVN+G 
Sbjct: 249 VPEVTDTLEYYPGERPIFDLFNVEEEIQKALGRKVELKSGGYLIFDQTEAMTTVDVNTGA 308

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
                 +E+T  +TNLEAA  I RQLRLR+L G+I++DFIDME+  + R V + L+  L+
Sbjct: 309 FVGHRNLEETIFKTNLEAATAIGRQLRLRNLGGIIILDFIDMEDPDHQRQVLRTLERVLE 368

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
           +D A+ +V  +S+ GL+EM+R+R R S+ +    VC+ C+G G I++  +V   I R + 
Sbjct: 369 RDHAKCKVMGVSDLGLVEMTRKRTRESLEQVLCDVCSECQGRGSIKTPETVCYEIFREIL 428

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                Y   + +V     VV YLL+     + E EA  G +I   +      + F +
Sbjct: 429 RQHRAYDTDSYLVLAAQPVVDYLLDDASNHVAELEAFIGKTIRFQVEPMYNAESFDV 485


>gi|326316870|ref|YP_004234542.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373706|gb|ADX45975.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 495

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/424 (29%), Positives = 212/424 (50%), Gaps = 2/424 (0%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V       +GG      +K +    I++ +   Q L+VQ++K+  G KGA ++T +S+A
Sbjct: 69  HVADVWHRQEGGEAPMFARKGEPPVPIEKQVFEGQALMVQVIKDPIGTKGARLSTQVSIA 128

Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           GR  V +P         +         R  L+ +        G G ILRT G   +  E+
Sbjct: 129 GRLLVFLPQDDHVGVSQKIPAAERDALRARLQALVGDKATGGGGGFILRTNGEDSSDAEL 188

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             D  YL + W  ++E A+      L++++ NL++R +RDL  ++ + I +   + +   
Sbjct: 189 AEDIAYLRKTWARIKEAAMRQPPASLLHQDLNLLQRVLRDLVGEETASIRIDSREQFALL 248

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F +   P+    ++ Y+   PIF   GI+ ++       V L S GY+I++QTEAL +
Sbjct: 249 QAFGREFTPAAVPKLQLYKGERPIFDLYGIDEEIARALGRRVDLKSGGYLIVDQTEALTT 308

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G        +DT  +TNLEAA+ IARQLRLR+L G+I+ DFIDM  + +  +V  
Sbjct: 309 IDVNTGGYVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIADFIDMAREDHQHAVLA 368

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           + ++ L +DR +   G  S  GL+EM+R+R R S+     + C +C+G+G +++  SV  
Sbjct: 369 EFRKQLARDRVKTMTGGFSQLGLVEMTRKRTRESLAHMLCEPCAHCQGSGQVKTARSVCY 428

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR +     Q+      V   + VV   L+++   +       G  I++     L  +
Sbjct: 429 DILREILREARQFNPREFRVVASAKVVELFLDEESQHLAGLSDFIGKPISLQAESGLGQE 488

Query: 562 LFYI 565
            + I
Sbjct: 489 QYDI 492



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV V+    V+EL  E   ++ + GN+YL KV+RV P +Q+AF+D
Sbjct: 1  MQQDILINWS-PQETRVAVVEHGAVQELHVERTLEQGLVGNVYLGKVSRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 IGLERAAFLHVADV 73


>gi|241668232|ref|ZP_04755810.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876767|ref|ZP_05249477.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842788|gb|EET21202.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 890

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 189/632 (29%), Positives = 306/632 (48%), Gaps = 4/632 (0%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S  ++    A  D+    D+ I N    ++ A I        E S+ +   N  
Sbjct: 2   KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EDKNGFLPFKEVSEYYLKDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN   G  ISR++      K LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPDGGGISRRVEGEDREK-LKKYLKDLNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LWD++ +       P L+++E ++I R +RD   +D+ EIIV  ++ Y + K  
Sbjct: 181 FDTLVELWDSIFKAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDVKRQ 240

Query: 325 MKL-LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + L         V+ Y +  PIF + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++D+AR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C G G+I++  + AL+I
Sbjct: 361 MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF 480

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +++        N       +                   L  P SE            E
Sbjct: 481 QMQRIWGTSYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKPISEDQSVSPKEDNKLE 540

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +  +    +          +    G  S +       ++   +  +      +N  +   
Sbjct: 541 NKNIETTVQNNTNETSEKQEPKKKGFFSKLLDKLTGSNEVIAVENKKPQNKQYNNKDKAQ 600

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                  +     ++  +   +N++     K 
Sbjct: 601 KPQKSQDNRPQKDINQRDDRKANNNDRSDNKN 632



 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K+LI++   EETR+  L + ++ +LD E+  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
           +++GFLPF E+  +YY
Sbjct: 62 EDKNGFLPFKEV-SEYY 77


>gi|228474009|ref|ZP_04058750.1| ribonuclease, Rne/Rng family [Capnocytophaga gingivalis ATCC 33624]
 gi|228274523|gb|EEK13364.1| ribonuclease, Rne/Rng family [Capnocytophaga gingivalis ATCC 33624]
          Length = 513

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 148/569 (26%), Positives = 251/569 (44%), Gaps = 70/569 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S   +    +L++ R+ EL  E +      G+I LAK+ +    L AAFV+
Sbjct: 1   MTKELII-RSGASDVDFALLKNGRLVELHKEEDANGLSVGDIMLAKIHKPIQGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P            LL      +  S     D +  D     D + 
Sbjct: 60  VGYEKDAFLHYHDLGPQ-----------LLSLLKFIKEVSSGKIKDYSLKDFKQEPDIN- 107

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                                                        +   I EV+K  Q +
Sbjct: 108 ---------------------------------------------KNGAISEVLKAGQPI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +++ LS+AGRY VL+P + +  +IS+KI +  +++ LK I + ++
Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYLVLVPFSER-ISISQKIESKAEKERLKRIVQSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G GVI+RT    +   ++ +D +     W  + +       P  +  E N     +R
Sbjct: 182 PK-GFGVIIRTVAQDKKVADLDKDLQNSFERWIQMCKKIAQGTFPSKILSEMNRTGALLR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I V  E  Y + +D+++ + P    IV+ Y+   PIF +  IE Q+ +   
Sbjct: 241 DMFDDSFTGIHVDNESLYTQIRDYLQEIAPDKLNIVKLYKSSVPIFEKFHIERQIKTGLG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEAL  IDVNSG  + +    E TA + NL AA EIARQLRLRD+
Sbjct: 301 RTVSMTKGAYLVIEHTEALHVIDVNSGNHSNKAENQETTAFEVNLIAATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM   +N + +   L+E +K DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMSNGENRQKLFDALREEMKDDRAKHKILPPSKFGLIQITRQRVRPEINIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILR----SVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
           T +          +    +    I R      E          I ++ H  +  YL    
Sbjct: 421 TKEENPS-----KLDEVDAPITLIERMTTDLEEIIYQSNYNGRITLNLHPFIAAYLTKGI 475

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFY 564
            +   ++  ++   ++++     +   + 
Sbjct: 476 FSIRFKWFLKYKRWVSILPRDAYSYLEYR 504


>gi|86147835|ref|ZP_01066141.1| Ribonuclease G and E [Vibrio sp. MED222]
 gi|218708385|ref|YP_002416006.1| ribonuclease G [Vibrio splendidus LGP32]
 gi|85834362|gb|EAQ52514.1| Ribonuclease G and E [Vibrio sp. MED222]
 gi|218321404|emb|CAV17354.1| Ribonuclease G [Vibrio splendidus LGP32]
          Length = 489

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 209/565 (36%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E + ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGALQEIHVERDARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + E+   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAENEKKQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E    + K+            I+
Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSESERNRLKKVVSRYCDEHGGFII 170

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                  +                                            +   + LE
Sbjct: 171 RTAAEGADSNELA--------------------------------QDAAFLKRLWLKVLE 198

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                    R  G       I RDF                                 + 
Sbjct: 199 RRGKHKARTRLYGELCLSQRILRDF---------------------------------VG 225

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K   +  +  E       +++  L                    + I+  LD    
Sbjct: 226 TELSKIQVDSRLEYENLKEFTSEYVPELTDKLELYEGDKPIFDMYDTENEIQRSLDR--- 282

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+QTEA+ ++D+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 283 -KVELKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  +++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMLSEEHRKRVLTSLEAALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+  + V   L  ++   + 
Sbjct: 402 CSSCPACEGRGSVKTVETVCYEILREITRVNRAYDADKFVVYAAAAVAEALEGEESHALA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486


>gi|120611855|ref|YP_971533.1| ribonuclease G [Acidovorax citrulli AAC00-1]
 gi|120590319|gb|ABM33759.1| RNAse G [Acidovorax citrulli AAC00-1]
          Length = 517

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 125/424 (29%), Positives = 211/424 (49%), Gaps = 2/424 (0%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V       +GG      +K +    I++ +   Q L+VQ++K+  G KGA ++T +S+A
Sbjct: 91  HVADVWHRQEGGEAPMFARKGEPPLPIEKQVFEGQALMVQVIKDPIGTKGARLSTQISIA 150

Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           GR  V +P         +         R  L+ +        G G ILRT G   +  E+
Sbjct: 151 GRLLVFLPQDDHVGVSQKIPAAERDALRARLQALVGDKATGGGGGFILRTNGEDSSDAEL 210

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             D  YL + W  ++E A+      L++++ NL++R +RDL  ++ + I +   + +   
Sbjct: 211 AEDTAYLRKTWARIKEAAMRQPPASLLHQDLNLLQRVLRDLVGEETASIRIDSREQFALL 270

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F +   P+    ++ Y+   PIF   GI+ ++       V L S GY+I++QTEAL +
Sbjct: 271 QAFGREFTPAAVPKLQLYKGERPIFDLYGIDEEIARALGRRVDLKSGGYLIVDQTEALTT 330

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G        +DT  +TNLEAA+ IARQLRLR+L G+I+ DFIDM  + +  +V  
Sbjct: 331 IDVNTGGYVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIADFIDMAREDHQHAVLA 390

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           + ++ L +DR +   G  S  GL+EM+R+R R S+     + C +C+G G +++  SV  
Sbjct: 391 EFRKQLARDRVKTMTGGFSQLGLVEMTRKRTRESLAHMLCEPCAHCQGKGSVKTARSVCY 450

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR +     Q+      V   + VV   L+++   +       G  I++     L  +
Sbjct: 451 DILREILREARQFNPREFRVVASAKVVELFLDEESQHLAGLSDFIGKPISLQAESGLGQE 510

Query: 562 LFYI 565
            + I
Sbjct: 511 QYDI 514



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV V+    V+EL  E   ++ + GN+YL KV+RV P +Q+AF+D
Sbjct: 23 MQQDILINWS-PQETRVAVVEHGAVQELHVERTLEQGLVGNVYLGKVSRVLPGMQSAFID 81

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 82 IGLERAAFLHVADV 95


>gi|29346910|ref|NP_810413.1| ribonuclease G [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572375|ref|ZP_04849778.1| ribonuclease G [Bacteroides sp. 1_1_6]
 gi|298386443|ref|ZP_06995999.1| ribonuclease G [Bacteroides sp. 1_1_14]
 gi|29338808|gb|AAO76607.1| Ribonuclease G [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838150|gb|EES66238.1| ribonuclease G [Bacteroides sp. 1_1_6]
 gi|298260820|gb|EFI03688.1| ribonuclease G [Bacteroides sp. 1_1_14]
          Length = 524

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 131/580 (22%), Positives = 242/580 (41%), Gaps = 62/580 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D  + EL  E  +     GN+YL ++ ++ P L A FVD
Sbjct: 1   MTSEIVIDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +     +  +  +K++   +    +++      D+    D ++
Sbjct: 60  VGYEKDAFLHYLDLGPQF-----NSLEKFVKQTLSDKKKLNSISKATLLPDLD--KDGTV 112

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                +         +  IS     +++     G     +P   K     +      +  
Sbjct: 113 ANTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR 172

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L Q+                        + P       I R +        L    + L 
Sbjct: 173 LKQL---------------------LMSIKP--KNFGVIVRTVAEGKRVAELDGELKVLI 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE-GNLIKRAI 299
                                            +       +     +  E  +     +
Sbjct: 210 KHWE-----------------------------DAMAKVQKATKYPTLIYEETSRAVGLL 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E  Y E KD++ L+ P  A IV+ Y+   PI+   GI  Q+ S  
Sbjct: 241 RDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDNFGITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ NL AA+E+ARQLRLRD
Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +TT++C  C G G I+S      ++   ++  + +       +H H  V  ++     + 
Sbjct: 421 NTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAFINQGLVSL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +++ ++G  I ++   +LA   +        +  +   
Sbjct: 481 RRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520


>gi|196231911|ref|ZP_03130767.1| ribonuclease, Rne/Rng family [Chthoniobacter flavus Ellin428]
 gi|196224033|gb|EDY18547.1| ribonuclease, Rne/Rng family [Chthoniobacter flavus Ellin428]
          Length = 524

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 258/496 (52%), Gaps = 6/496 (1%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R ALL+   + +   E   D    G +      ++E            E+ + +   + +
Sbjct: 30  RVALLEGGVLEEYSIERETDRNIVGSIFKGRVKNIEHGLKAMFVDIGFEKNAFLHFWDAL 89

Query: 146 VSNVEDVKGGSPEDVPKKFKRQ---YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
            + ++           +K  ++     I ++      +LVQ+ K     KG  +TT LSL
Sbjct: 90  PAALDSGVEQVERSSGRKENKRITAQDIPKIYPVGSEVLVQVTKGPISTKGPRITTNLSL 149

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRY VLMP + +   ISRKI +P +R  L++I + L++P  MGVI+RT G  +      
Sbjct: 150 AGRYLVLMPYSDQCG-ISRKIESPKERDRLRKILKELDIPENMGVIVRTVGEGQRARYFV 208

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
           RD   L+  W  + +      AP  V++E +LI+R +RD    +I E+I   E   +   
Sbjct: 209 RDLGLLVEQWRAIEQAMKEKPAPACVFQEPDLIERTVRDFLTDEIDEVICDDEHAVKRMV 268

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
           D +  +    A  +R Y+D   IF R G++ Q+D     +V LP  GY++I++TEAL++I
Sbjct: 269 DVVGQISRRSAGRIRHYQDTQAIFERYGVQKQIDDAFHRQVWLPCGGYIVIDETEALIAI 328

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVN+GR+      + T LQTNLEAA+E+ARQ+RLR++ GLI+ DFIDM+ +K+ ++V  +
Sbjct: 329 DVNTGRNKGSGSADKTILQTNLEAADEMARQMRLRNIGGLIIGDFIDMKNRKDQQAVYSR 388

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           +KE LK+D+++  V  IS  GL+EM+RQR   S+  +  + C YC G G ++S  ++++ 
Sbjct: 389 MKERLKRDKSKTHVLPISPLGLMEMTRQRAAESISGAVFEPCPYCGGRGKVKSAMTMSVE 448

Query: 503 ILRSVEEYLLQYT--AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           + RS+ + + ++    H I V  H  V+  L  +    +VE E R+   +          
Sbjct: 449 LQRSLHQIMRKHQDTIHEIKVIVHPHVMQRLRTEDEELLVEIERRYAGRLTFRADPTYHH 508

Query: 561 KLFYIEKGSPVQALVN 576
           + F I   +  Q L  
Sbjct: 509 EKFTIVDANTGQELKP 524


>gi|223936566|ref|ZP_03628477.1| ribonuclease, Rne/Rng family [bacterium Ellin514]
 gi|223894730|gb|EEF61180.1| ribonuclease, Rne/Rng family [bacterium Ellin514]
          Length = 640

 Score =  271 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 160/497 (32%), Positives = 265/497 (53%), Gaps = 8/497 (1%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
             R A+L+E  + +   E   ++   G +      +LE+    A      E+ + +   +
Sbjct: 143 ETRVAVLEEGKLEEFTIERTTEERLVGSIFKGKVRNLEDGLKAAFVDIGFEKNAFLHYWD 202

Query: 144 DVVSNVE---DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
            V SN +   +V     +   K    Q  I  +      ++VQ+ K   G KG  VTT L
Sbjct: 203 IVPSNFDSGVEVVERETKKRDKPRITQKDIPRLYPPGSDIIVQVTKGPIGTKGPRVTTNL 262

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
            L GRY VL+PN+ +   ISRKI N  +R+ LK+I R L +P GMGVI+RT G  +    
Sbjct: 263 VLPGRYLVLLPNSDQSG-ISRKIENQQERQRLKKILRTLNIPDGMGVIIRTVGEGQQLRY 321

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
             RD   L+  W+ +++   N  +   V++E +LI+R +RD   +D+  I+V   K Y  
Sbjct: 322 FVRDLALLIEEWNLIQDRIKNQPSATCVFQEPDLIERTVRDFLTEDVERIVVDNPKAYDR 381

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            ++ +  +    A  V+ Y D   +F R  I  QL++    +V L S GY+++++TEALV
Sbjct: 382 MREMISKISRRSASKVKLYGDSQAVFDRFNISKQLENAFSRQVHLKSGGYIVVDETEALV 441

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVN+GR       E   L+ N+EAA+EI+RQLRLR++ GLIV+DFIDM+ +++ +SV 
Sbjct: 442 AIDVNTGRHKGGKDQETAILKVNIEAADEISRQLRLRNMGGLIVLDFIDMKSRRDQQSVY 501

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           +++K+ L++D+A+  +  IS  GL+EM+RQR   SV  +  + C YCKG G ++S  +++
Sbjct: 502 QRMKDGLRRDKAKTHILPISQLGLMEMTRQRHSESVHAAVYEECPYCKGRGKVKSALTMS 561

Query: 501 LSILRSVEEYLLQYTAHN----IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
           + I R + E L + +       + +  H  V+  L N+    ++E E R+   ++     
Sbjct: 562 VEIQRKLSEILKRRSRDESDFQLRIVVHPSVLERLRNEDEKHLIEMEKRYFGKLSFRAEP 621

Query: 557 ELADKLFYIEKGSPVQA 573
            L  +LF I   +  + 
Sbjct: 622 SLHAELFKIVNVANGEE 638


>gi|90022830|ref|YP_528657.1| RNAse G [Saccharophagus degradans 2-40]
 gi|89952430|gb|ABD82445.1| RNAse G [Saccharophagus degradans 2-40]
          Length = 492

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 136/414 (32%), Positives = 222/414 (53%), Gaps = 6/414 (1%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
           PE    + +    I+EV++  Q LLVQ+ K+  G KGA +TT LS++ RY V MPNT   
Sbjct: 77  PEGAESRPRSDIDIREVVREGQELLVQVTKDPIGTKGARLTTQLSVSARYLVYMPNTPHI 136

Query: 217 ETISRKITNPVDRKNLKEIARGL-----EVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
             IS +I +  +R+ L+ I   L     E     G I+RT     T+ E++ D  ++  L
Sbjct: 137 G-ISNRIEDAEERERLRTIVEKLAAEHAEEFPDGGFIIRTVAEGATEEEMRADIPFVYHL 195

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W ++ +    + AP ++YE+  L  R IRD    +I ++ +   + Y     F K   P 
Sbjct: 196 WHDLADSVKKAKAPSIIYEDLPLFMRTIRDFMRSNIEKVRIDSRESYARMDKFAKHYAPE 255

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               +  Y    P+F   G+E ++      +V L S GY+++ QTEA+ +IDVN+G    
Sbjct: 256 IGGRLEHYPGERPLFDLYGVEEEIQRALDKKVVLKSGGYLVVEQTEAMSTIDVNTGAFVG 315

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  +TNLEAA  IARQLRLR+L G+I++DFIDM +K++ R V + L++ L+KDR
Sbjct: 316 SRNLEETIFKTNLEAAAAIARQLRLRNLGGIIILDFIDMLDKEHQRQVLRTLEKCLEKDR 375

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           A+  +  +S  GL+EM+R+R R S+ ++  + C  C+G G ++S  +V   I R +    
Sbjct: 376 AKTSITGVSELGLVEMTRKRTRESLGQAMCESCPVCRGRGILKSPETVCYEIFREILRDA 435

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             Y     +V     V+  LL+++ A + + E+  G +I   +      + + I
Sbjct: 436 RAYENEKFMVLASQVVIDLLLDEESANVADLESFIGRTIEFRVETVYNQEQYDI 489



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++L++     ETRV ++ +  ++E+  E    K   GNIY  KV RV P +QAAFVD
Sbjct: 1  MTDEILVN-CGPTETRVALVENGVLQEVYLERTRAKGFVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R GF+   +I
Sbjct: 60 IGQERAGFIHVSDI 73


>gi|319762854|ref|YP_004126791.1| ribonuclease, rne/rng family [Alicycliphilus denitrificans BC]
 gi|330824933|ref|YP_004388236.1| Rne/Rng family ribonuclease [Alicycliphilus denitrificans K601]
 gi|317117415|gb|ADU99903.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans BC]
 gi|329310305|gb|AEB84720.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans K601]
          Length = 495

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 6/426 (1%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V    +  +GG      +K +    I++ +   Q L+VQ++K+  G+KGA ++T +S+A
Sbjct: 69  HVADVWQRQEGGEAPMFARKNEPPVPIEKQVFEGQSLMVQVIKDPIGSKGARLSTQISIA 128

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG----VILRTAGASRTKI 259
           GR  V +P         +      +R  L+   + L      G     ILRT G   +  
Sbjct: 129 GRLLVFLPQDDHIGISQKIP--QEERDALRARLQALAGDKSTGGGGGFILRTNGEDASDA 186

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E+  D  YL + W  +R+ AL+     L+Y++ NL++R +RDL  ++   I +   + + 
Sbjct: 187 ELAEDIAYLRKTWAGIRQAALSRPPTSLLYQDLNLLQRVLRDLVGEETQSIRLDSREQFA 246

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
             + F +  MP+    ++ Y+   PIF    I+ ++       V L S GY+I++QTEAL
Sbjct: 247 ALQKFGRDFMPAAVAKLQLYKGERPIFDLYAIDEEIARALGRRVDLKSGGYLIVDQTEAL 306

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +IDVN+G        +DT  +TNLEAA  IARQLRLR+L G+++ DFIDM  + +  +V
Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAV 366

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
             + K+ L +DR +  VG  S  GL+EM+R+R R S+     + C  C G G +++  +V
Sbjct: 367 LAEFKKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCHGVGEVKTARTV 426

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              ILR V     Q+      V     VV   L+++   +       G  I++     + 
Sbjct: 427 CYDILREVLREARQFNPREFRVIASPKVVELFLDEESQHLAGLSDFIGKPISLQAETAVG 486

Query: 560 DKLFYI 565
            + + I
Sbjct: 487 PEEYDI 492



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV V+ +  V+EL  E   ++ + GN+YL KV+RV P +Q+AF+D
Sbjct: 1  MQQDILINWS-PQETRVAVVENGAVQELHVERALERGLVGNVYLGKVSRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 IGLERAAFLHVADV 73


>gi|254515285|ref|ZP_05127346.1| hypothetical protein NOR53_1804 [gamma proteobacterium NOR5-3]
 gi|219677528|gb|EED33893.1| hypothetical protein NOR53_1804 [gamma proteobacterium NOR5-3]
          Length = 484

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 131/398 (32%), Positives = 206/398 (51%), Gaps = 2/398 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E ++  Q++ VQ++K+    KGA +T  LS++ RY V MP +       R        
Sbjct: 84  IAEHLREGQLITVQVLKDPISKKGARLTCQLSVSTRYLVYMPQSDHVGVSQRIDDVDERA 143

Query: 230 KNL--KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           +           E   G G ILRTA     + EI+ D  YL RLW  V   A  +  P L
Sbjct: 144 RLQQVLADVLKSEEMDGGGYILRTAAEGAGEGEIRADLSYLKRLWAVVSRRAATAETPEL 203

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YE+  L  R +RDL    +  I+V   + Y    DF    MP  A +V  Y+   PIF 
Sbjct: 204 LYEDLPLQLRTVRDLVRPGMQRILVDSHENYTVLNDFCLKYMPEVADLVELYDGERPIFD 263

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             GIE  +       V L S G+++I+QTEA+ +IDVN+G        ++T  +TNLEAA
Sbjct: 264 LYGIEEDIQRALGRVVPLKSGGHLVIDQTEAMTTIDVNTGSFVGRRNQQETLFKTNLEAA 323

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
             +ARQLRLR+L G+++VDFIDM + ++ R V + L++++ +D  + ++  +S+ GL+EM
Sbjct: 324 TVLARQLRLRNLGGIVIVDFIDMRDAEHRRGVHRALEKAMARDPVKNKITGVSDLGLVEM 383

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+     + C  C+G G +++  +V   ILR +      Y    ++V     V
Sbjct: 384 TRKRSRESLERILCEDCPSCEGRGVLKTAETVCYEILREIMRDARAYETGGLMVLASQAV 443

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  LL+++ A + + E+  G SI+     +   + F I
Sbjct: 444 VERLLDEESANVGDLESFIGRSISFRAEPDYTQEQFDI 481


>gi|239815671|ref|YP_002944581.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110]
 gi|239802248|gb|ACS19315.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110]
          Length = 508

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 118/419 (28%), Positives = 204/419 (48%), Gaps = 10/419 (2%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
           PE   +       I++ +   Q LLVQ++K+  G KGA ++T +S+AGR  V +P  +  
Sbjct: 87  PERDHRNGGPMVPIEKQVFEGQSLLVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDNHI 146

Query: 217 ETISRKITNPVDRKNLKEIAR----------GLEVPAGMGVILRTAGASRTKIEIKRDFE 266
               +  ++  +    + +A           G+      G ILRT G   +  E+  D  
Sbjct: 147 GVSQKIPSDQRESLRTRMLALIEAAAAADSGGVVPANTGGFILRTNGEDSSDAELAEDIA 206

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YL + W  +RE +       L++++ +L++R +RD+  +D   I +   + +     F  
Sbjct: 207 YLRKTWSRIREASSKMPPMSLLHQDLSLLQRVLRDMTSEDTQTIRIDSREQFEALLKFGL 266

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
             MP  A  ++ Y+   PIF    ++ ++       V L S GY++++QTEAL ++DVN+
Sbjct: 267 EYMPQAAGKLQHYKGERPIFDLYSVDEEIAKALGRRVELKSGGYLVVDQTEALTTVDVNT 326

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           G        +DT  +TNLEAA+ IARQLRLR+L G+I+VDFIDM    +   V  + ++ 
Sbjct: 327 GGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMGRDDHREQVLAEFRKQ 386

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           L +DR +   G  S  GL+EM+R+R R S+     + C  C G G +++  SVA   +R 
Sbjct: 387 LARDRVKTTAGGFSQLGLVEMTRKRTRESLAHMLCEPCAACGGQGIVKTARSVAYDAMRE 446

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +     Q+T     + +   V+   L+++   +       G  I++     +    + I
Sbjct: 447 ILREARQFTPREFRIVSSPQVIELFLDEESQHLAGLSDFIGKPISLQSEPAIGQGQYDI 505


>gi|301630841|ref|XP_002944525.1| PREDICTED: ribonuclease G-like [Xenopus (Silurana) tropicalis]
          Length = 443

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 127/424 (29%), Positives = 211/424 (49%), Gaps = 2/424 (0%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V    +  +GG      +K +    I++ +   Q L+VQ++K+  G+KGA ++T +S+A
Sbjct: 17  HVADVWQRQEGGEAPMFARKSEPPVPIEKQVFEGQSLMVQVIKDPIGSKGARLSTQVSIA 76

Query: 204 GRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           GR  V +P         +   +  D  R  L+ +        G G ILRT G   +  E+
Sbjct: 77  GRLLVFLPQDEHVGVSQKIPLDERDALRTRLQALVGDKATGGGGGFILRTNGEDASDEEL 136

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             D  YL + W  +R+ A       L+Y++ NL++R +RD+  +D   I +   + +   
Sbjct: 137 AEDIAYLRKTWAGIRQAATRLPPLSLLYQDLNLLQRVLRDIASEDTQAIRIDSREQFAAL 196

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F +  MP+ A  ++ Y+   PIF    I+ ++       V L S GY+I++QTEAL +
Sbjct: 197 QQFGREFMPAAAAKLQLYKGERPIFDLFAIDEEIARALGRRVDLKSGGYLIVDQTEALTT 256

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G        +DT  +TNLEAA  IA QLRLR+L G+++ DFIDM  + +  +V  
Sbjct: 257 IDVNTGGYVGARNFDDTIFKTNLEAAGAIACQLRLRNLGGIVIADFIDMLREDHKSAVLA 316

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           + K+ + +DR +  VG  S  GL+EM+R+R R S+     + C+ C G G +++  SV  
Sbjct: 317 EFKKQIGRDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCSTCHGVGEVKTARSVCY 376

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR V     Q+      V     VV   L+++   +       G  I++     +  +
Sbjct: 377 DILREVLREARQFNPREFRVIASPKVVELFLDEESQHLAGLSDFIGKPISLQAESSMGQE 436

Query: 562 LFYI 565
            + I
Sbjct: 437 QYDI 440



 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 54 LQAAFVDYGGNRHGFLPFLEI 74
          +Q+AF+D G  R  FL   ++
Sbjct: 1  MQSAFIDIGLERAAFLHVADV 21


>gi|254479984|ref|ZP_05093232.1| ribonuclease, Rne/Rng family [marine gamma proteobacterium
           HTCC2148]
 gi|214039546|gb|EEB80205.1| ribonuclease, Rne/Rng family [marine gamma proteobacterium
           HTCC2148]
          Length = 489

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 126/406 (31%), Positives = 214/406 (52%), Gaps = 3/406 (0%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
           + +    I + +   + ++VQ+ K+  G+KGA +TT LS++ RY V MP ++      + 
Sbjct: 81  RAQGSDAIGDYLHEGKKVIVQVTKDPLGSKGARITTELSVSSRYLVFMPQSNHVGVSQQI 140

Query: 223 ITNPVDRKN---LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
                  +    L +     E+ AG G ILRTA       E++ D  +L RLW  V    
Sbjct: 141 DDAVERDRLQQLLADGIAAEEMDAGGGYILRTAAEGVGLDEVRADLRFLKRLWSAVSRRG 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             +    L+Y +  L  R +RDL    +  I+V   + Y    +F    MP  + ++  Y
Sbjct: 201 KKARKAELLYSDLALHMRTVRDLARPGVERILVDSRESYNALTEFCNEYMPEVSDLLEHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F   GIE +L      +V L S GY+II+QTEA+ +IDVN+G       +E+T 
Sbjct: 261 CGERPLFDLHGIEEELQGALGRKVGLKSGGYLIIDQTEAMTTIDVNTGSFVGRRNLEETI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  +ARQLRLR+L G+I+VDFIDM+++++ R V + L +++ +D AR ++  +
Sbjct: 321 FKTNLEAATMLARQLRLRNLGGIIIVDFIDMQDEEHRRQVHRTLDKAMARDPARNKITGV 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+ +   + C+ C G G +++  ++   I R +      Y    +
Sbjct: 381 SELGLVEMTRKRTRESLEQLLCEDCSVCFGRGVLKTAETICYEIFREIMRDARAYENDTL 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +V     V+  LL+++ A + + E   G +I++ +  +   + F I
Sbjct: 441 MVLAAQGVIDRLLDEESANVADLEEFIGKAISLRVEPDNNPEHFDI 486


>gi|149277322|ref|ZP_01883464.1| ribonuclease G [Pedobacter sp. BAL39]
 gi|149232199|gb|EDM37576.1| ribonuclease G [Pedobacter sp. BAL39]
          Length = 503

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 126/559 (22%), Positives = 224/559 (40%), Gaps = 60/559 (10%)

Query: 17  VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHP 76
           + ++ D ++ EL  E  +     G+IYL ++ ++ P L AAFVD G  +  FL + ++ P
Sbjct: 3   IALVEDKQLVELHKEHINNNYAVGDIYLGRIKKIMPGLNAAFVDVGYEKDAFLHYFDLGP 62

Query: 77  DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
                     Q+L+K + I +             + T+ ++  LE     A    E   +
Sbjct: 63  Q--------VQSLIKLTKIKRNG---------SVNGTLLDNFKLEGDINKAGKISEVVSK 105

Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
           +++     V    E +    P            I         +LV        +K    
Sbjct: 106 NLVL---PVQIAKEPISTKGPRLSSDLSIAGRYI---------VLVPFSNVISISKKIKS 153

Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
            T                               K + E  +       +  +    G   
Sbjct: 154 NTE--------------------------RNRLKKIIESIKPKNFGVIIRTVSEGKGVHE 187

Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316
            + ++           +N  +   ++     V+ E +     IRD+   D + + V+   
Sbjct: 188 LQKDLLDSVTKW----ENFIKKLPDAEPSKRVWGEMDRTSTLIRDILSTDFANVYVNDSG 243

Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
            + + + ++  + P   +IV+ Y+   PIF    IE Q+ +     V L    Y+++  T
Sbjct: 244 LFEDIRSYVHEISPEMEKIVKLYKHKEPIFEHFSIEKQIKNAFGKTVNLAGGAYLVVEHT 303

Query: 377 EALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435
           EAL  IDVNSG  T      E+ ALQ N EAA+EIARQLRLRD+ G++V+DFIDM +  N
Sbjct: 304 EALHVIDVNSGNRTASKENQEENALQVNKEAAKEIARQLRLRDMGGIVVIDFIDMHKPVN 363

Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
            + +   LKE +  DRA+  +   S FGL++++RQR+R  +   T++ C  C G G I++
Sbjct: 364 RKMLFDYLKELMLLDRAKHTILPPSKFGLVQITRQRVRPEMNIVTSEKCPTCDGTGEIKA 423

Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
              +   I  ++   L +    NI +  H  +  ++     +   ++  +FG  I +   
Sbjct: 424 SIVLMDDIENNLTYILQEQNEKNITLCVHPYIEAFIKKGFISLQWKWFFKFGQRIKIRAV 483

Query: 556 IELADKLFYIEKGSPVQAL 574
                  F+       +  
Sbjct: 484 PSYHLTEFHFISAKDEEIK 502


>gi|78223743|ref|YP_385490.1| ribonuclease E [Geobacter metallireducens GS-15]
 gi|78194998|gb|ABB32765.1| RNAse E [Geobacter metallireducens GS-15]
          Length = 806

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 191/475 (40%), Positives = 280/475 (58%), Gaps = 4/475 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            +  P+   R+  IQEVI+  Q L+VQ+ K ER  KGAA+TTY+S  GRY VLMP  S  
Sbjct: 83  DDVPPENRNRRPRIQEVIRRGQELIVQVEKGERDMKGAALTTYMSFPGRYMVLMPG-SDS 141

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
             ISRK+ +  DRK LKE    +E+P G+G I+RT    +TK E+ +D + L+ L+ +++
Sbjct: 142 AGISRKVESDADRKKLKEKLSQMEIPEGIGYIVRTEALGKTKTELNKDLQNLLTLYKSIQ 201

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           E A    AP L+++E N++ R IRD +  +I E++V  ++ Y+EA+DF K  MP Y ++V
Sbjct: 202 EKAAALKAPALIHQEMNVVIRTIRDYFTAEIDEVLVDSKEVYKEARDFFKQTMPKYEKLV 261

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
           + + +  PIF R  IE Q+D +++ +V L S GY+II  TEALVSIDVNSG++T E  +E
Sbjct: 262 KLHTEKRPIFSRYQIEEQIDLIYEKKVPLKSGGYLIIEPTEALVSIDVNSGKTTGEKGVE 321

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           DTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N +VEK LK +LK+D+ARV+V
Sbjct: 322 DTAYKTNLEAAEEAARQLRLRDLGGLIVLDFIDMRDRKHNATVEKTLKAALKEDKARVEV 381

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
           G IS FG+LEMSRQRI+ ++ + +T  C +C G G ++S  S+ALS LR V     + T 
Sbjct: 382 GRISQFGMLEMSRQRIKQTLEQGSTLECPHCSGRGKVKSVESMALSFLRKVHAAAAKGTV 441

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE---KGSPVQA 573
             +      +V  YLLN+K+  +   E  + + + V            +E   +  P   
Sbjct: 442 AEVHGGLPLEVAYYLLNRKKRELARIEDDYDIVVTVKGRTSFLMNELELETVKREKPAHI 501

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                     + +  +  +  E V  +E  L           + +    +     
Sbjct: 502 EHPAEAAEAPEKKPETVMEAAEAVEPEETALQEGGEGKKRKRRRSRKKGKGEETP 556


>gi|121604639|ref|YP_981968.1| ribonuclease [Polaromonas naphthalenivorans CJ2]
 gi|120593608|gb|ABM37047.1| RNAse G [Polaromonas naphthalenivorans CJ2]
          Length = 499

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 121/398 (30%), Positives = 205/398 (51%), Gaps = 2/398 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I++ +   Q ++VQ++K+  G KGA +T  +S+AGR  V +P  +      +      
Sbjct: 101 RPIEKQLFEGQAVMVQVLKDPMGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPRQR 160

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           +   L++  + L    G G ILRT G   T  E+  D  YL + W  ++E +L   A  +
Sbjct: 161 ED--LRQRVQTLVGDMGGGFILRTNGEEATDTELAEDIAYLRKTWIRIKEASLRLPATSV 218

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           ++++ +L++R +RD+  ++   I +   + + + K F    MPS    ++ Y    PIF 
Sbjct: 219 LHQDLSLLQRVLRDMVLENTQTIRIDSREQFEKLKAFAVEFMPSTVPKLQLYSGERPIFD 278

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              I+ ++       V L S GY++I+QTEAL +IDVN+G        E+T  +TNLEAA
Sbjct: 279 LFNIDEEIAKALGRRVDLKSGGYLVIDQTEALTTIDVNTGGFVGARNFEETIYKTNLEAA 338

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + IARQLRLR+L G+++VDFIDM ++ +  +V  + K  L +DR +  V   S  GLLEM
Sbjct: 339 QAIARQLRLRNLGGIVIVDFIDMSKENHRDAVLAEFKRQLARDRIKTAVNGFSALGLLEM 398

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+     + C+ C G G +++  SV   ILR +     Q+      +     V
Sbjct: 399 TRKRTRESLAHQLCEPCSACTGKGIVKTARSVTYDILREILREARQFNPREFRIVASPKV 458

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +   L+++   +       G  I++     +A + + I
Sbjct: 459 IELFLDEESQHLASLSDFIGKPISLQAEAVMAQEQYDI 496



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ S  +ETRV V+    V+EL  E   ++ + GN+YL KV RV P +Q+AF+D
Sbjct: 1  MQQEILINWS-PQETRVAVVEHAAVQELQVERTLERGLVGNVYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G +R  FL   ++  
Sbjct: 60 IGLDRAAFLHVADLMS 75


>gi|56708289|ref|YP_170185.1| ribonuclease E [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670760|ref|YP_667317.1| ribonuclease E [Francisella tularensis subsp. tularensis FSC198]
 gi|224457411|ref|ZP_03665884.1| ribonuclease E [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370773|ref|ZP_04986778.1| ribonuclease E [Francisella tularensis subsp. tularensis FSC033]
 gi|254875110|ref|ZP_05247820.1| ribonuclease E [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604781|emb|CAG45860.1| Ribonuclease E [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321093|emb|CAL09243.1| Ribonuclease E [Francisella tularensis subsp. tularensis FSC198]
 gi|151569016|gb|EDN34670.1| ribonuclease E [Francisella tularensis subsp. tularensis FSC033]
 gi|254841109|gb|EET19545.1| ribonuclease E [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159519|gb|ADA78910.1| Ribonuclease E [Francisella tularensis subsp. tularensis NE061598]
          Length = 885

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 187/652 (28%), Positives = 319/652 (48%), Gaps = 22/652 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + + K  
Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + LL  S+    V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612
            +++              L+   + +          +     + +    A     +    
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665
           +   D +   +       ++ +++            TD   A   ++ +  Q   + +F 
Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              + +     N   N  +      + +    +          + P    ++
Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|160898966|ref|YP_001564548.1| ribonuclease [Delftia acidovorans SPH-1]
 gi|160364550|gb|ABX36163.1| ribonuclease, Rne/Rng family [Delftia acidovorans SPH-1]
          Length = 515

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 130/486 (26%), Positives = 225/486 (46%), Gaps = 6/486 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+++   + +   E   +    G+V +     +      A      E     +A
Sbjct: 31  PQETRVAIIENGAVQELHMERPLERGLVGNVYLGKVSRVLPGMQSAFIDIGLE----RAA 86

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
              V    +  +GG      +K      I++ +   Q ++VQ++K+  G KGA ++T +S
Sbjct: 87  FLHVADVWQRQEGGEAPMFARKDMPVVPIEKQVFEGQTIMVQVIKDPIGTKGARLSTQIS 146

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI--ARGLEVPAGMGVILRTAGASRTKI 259
           +AGR  VL+P         +      D    +        E   G G ILRT G   +  
Sbjct: 147 IAGRLLVLLPQDDHIGISQKIPQGERDALRARLQGLVGTKETGGGGGFILRTNGEDSSDA 206

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E+  D  YL + W  +++ ++      L++++ NL++R +RDL  +    I +  ++ + 
Sbjct: 207 ELADDIRYLRKTWSRIKDASVRLPPMSLLHQDLNLLQRVLRDLVGEGTQSIRIDSKEQFA 266

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
               F +  MP+    ++ Y    PIF    I+ ++       V L S GY+I++QTEAL
Sbjct: 267 LLMTFGQEYMPAAVPKLQHYRGERPIFDLFAIDEEIARALGRRVDLKSGGYLIVDQTEAL 326

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            ++DVN+G        +DT  +TNLEAA++IARQLRLR+L G+I+VDFIDM    +   V
Sbjct: 327 TTVDVNTGGYVGARNFDDTIFKTNLEAAQQIARQLRLRNLGGIIIVDFIDMVRDDHQAEV 386

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
             + K  L +DR +   G  S  GL+EM+R+R R S+     + C  C+G G++++  SV
Sbjct: 387 LSEFKRQLGRDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCESCPVCQGKGHVKTVRSV 446

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              +LR +     Q+      +     VV   L+++   +          I++     +A
Sbjct: 447 CYEVLREILREARQFNPREFRIVASPKVVEMFLDEESQHLAGLSDFIKKPISLQAETAMA 506

Query: 560 DKLFYI 565
            + + I
Sbjct: 507 QEQYDI 512



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV ++ +  V+EL  E   ++ + GN+YL KV+RV P +Q+AF+D
Sbjct: 21 MQQDILINWS-PQETRVAIIENGAVQELHMERPLERGLVGNVYLGKVSRVLPGMQSAFID 79

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 80 IGLERAAFLHVADV 93


>gi|187931488|ref|YP_001891472.1| ribonuclease E [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712397|gb|ACD30694.1| ribonuclease E [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 885

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 186/652 (28%), Positives = 318/652 (48%), Gaps = 22/652 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + + K  
Sbjct: 181 FDTLVELWGSILQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + LL  S+    V+ Y +  P+F + GI+ Q+++ ++ E+ L S G ++I+ TEALV+ID
Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLTSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612
            +++              L+   + +          +     + +    A     +    
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665
           +   D +   +       ++ +++            TD   A   ++ +  Q   + +F 
Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              + +     N   N  +      + +    +          + P    ++
Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|150008610|ref|YP_001303353.1| ribonuclease G [Parabacteroides distasonis ATCC 8503]
 gi|255014408|ref|ZP_05286534.1| ribonuclease G [Bacteroides sp. 2_1_7]
 gi|256841373|ref|ZP_05546880.1| ribonuclease G [Parabacteroides sp. D13]
 gi|262383460|ref|ZP_06076596.1| ribonuclease G [Bacteroides sp. 2_1_33B]
 gi|298376094|ref|ZP_06986050.1| ribonuclease G [Bacteroides sp. 3_1_19]
 gi|149937034|gb|ABR43731.1| ribonuclease G [Parabacteroides distasonis ATCC 8503]
 gi|256737216|gb|EEU50543.1| ribonuclease G [Parabacteroides sp. D13]
 gi|262294358|gb|EEY82290.1| ribonuclease G [Bacteroides sp. 2_1_33B]
 gi|298267131|gb|EFI08788.1| ribonuclease G [Bacteroides sp. 3_1_19]
          Length = 525

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 128/582 (21%), Positives = 241/582 (41%), Gaps = 63/582 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + VL D  + EL  E+ +     G+IYL KV ++ P L AAF+D
Sbjct: 1   MISELVVDV-QPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI-AQTDSEAVADDVTHGDVTIPNDHS 119
            G  +  FL +L++ P++       +Q L         + ++ + +   +G ++      
Sbjct: 60  VGYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVG 119

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            E +  IA     T+   + S                       F  +Y +     ++  
Sbjct: 120 QEVLVQIAKEPISTKGPRLTSE--------------------LSFAGRYIVLIPFADKVS 159

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           +  +I   E   +   +   +                  I R  +       L    + L
Sbjct: 160 VSTKIKSSEERARLRQLIQSIKPKNFSV-----------IVRTSSEGKRVAELDHELKTL 208

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                                            ++         AP ++YEE       +
Sbjct: 209 MKRW-----------------------------EDNIVKVPKLKAPAIIYEETARTVALL 239

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD++      I V+ ++ Y   +D++ L+ P    IV+ Y    PIF    +  Q+ SL 
Sbjct: 240 RDIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFDNFAVTKQIKSLF 299

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              VT  S  Y+II  TEA+  IDVNSG  ++    ++ TA+  N+ AA+EIARQLRLRD
Sbjct: 300 GRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRD 359

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IV+DFIDM E  N + + + + +++  DRA+  +  +S FGL++++RQR+R ++  
Sbjct: 360 MGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDV 419

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            T++ C  C G G ++       S+   ++  + ++      +H H  V  Y+       
Sbjct: 420 DTSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLFPL 479

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
            ++++ ++   + V+    LA   +        +  +    +
Sbjct: 480 SMKWKMKYTHGLKVIPNQSLAFLEYKFFDADKNELDMKEEKE 521


>gi|261856323|ref|YP_003263606.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2]
 gi|261836792|gb|ACX96559.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2]
          Length = 496

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 225/426 (52%), Gaps = 9/426 (2%)

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
           +V D++    E       R   I ++++  Q L+VQ++K+  G KGA +TT +++  RY 
Sbjct: 69  HVSDIELKPEEKETGVETRPRMIYDLLRTGQNLIVQVIKDPLGTKGARLTTEITIPSRYL 128

Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLE--------VPAGMGVILRTAGASRTKI 259
           V +PN       SR   +PV R  LK+I                  G ILRTA    T  
Sbjct: 129 VYLPNGRNIGVSSRI-EDPVQRDRLKDILAEFMAESIERVGENEIGGFILRTAAEGATAE 187

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
            +++D+++L+RLW +V+E    +    L++E+  +  R +RD+  + + +I +   + Y 
Sbjct: 188 ALRQDYDFLLRLWASVQERQSQTNGVGLIFEDLPIALRTLRDVLGRYVEKIRIDSRETYH 247

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            A  F + ++P    I+  Y    P+F    IE ++ +  +  V L S GY+II+QTEA+
Sbjct: 248 RAIQFAQEMVPDILPILEHYPGERPLFDMHNIEQEIVNAMERRVPLKSGGYIIIDQTEAM 307

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +IDVN+G       +E+T  +TNLEAA  IARQLRLR+L G+I++DFIDM E  +  +V
Sbjct: 308 TTIDVNTGGFVGSKNLEETIFKTNLEAASTIARQLRLRNLGGIIILDFIDMIEPDHRLAV 367

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           ++ LK +L+ D AR +V  +S  GL+EM+R+R R S+      VC  C G G +++  +V
Sbjct: 368 QETLKRALEADHARTKVCEVSGLGLVEMTRKRTRESLEHILCTVCPTCSGRGTVKTAETV 427

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              I R V     QY A  ++V   S V+  L  +   ++ E +   GV + +   +   
Sbjct: 428 CYEIFREVTREARQYHAKQMLVIASSSVIDRLREEDSTSLAELQEFIGVPLRLQADVHYL 487

Query: 560 DKLFYI 565
            + + I
Sbjct: 488 PEQYDI 493


>gi|134301754|ref|YP_001121722.1| ribonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049531|gb|ABO46602.1| ribonuclease, rne/rng family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 885

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 187/652 (28%), Positives = 319/652 (48%), Gaps = 22/652 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + + K  
Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + LL  S+    V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612
            +++              L+   + +          +     + +    A     +    
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665
           +   D +   +       ++ +++            TD   A   ++ +  Q   + +F 
Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              + +     N   N  +      + +    +          + P    ++
Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|34495580|ref|NP_899795.1| ribonuclease G [Chromobacterium violaceum ATCC 12472]
 gi|34101435|gb|AAQ57804.1| ribonuclease G [Chromobacterium violaceum ATCC 12472]
          Length = 498

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/406 (27%), Positives = 207/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I++++   Q +LVQ++K+  G KGA ++T +SLAGR+ V +P        
Sbjct: 90  QRQHPTEPQRIEKMLFEGQTVLVQVIKDPIGTKGARLSTQISLAGRFLVHLPQEEHIGVS 149

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  ++         + + L   +  G I+RT+  +    E+  D EYL +LW ++++ +
Sbjct: 150 QKIESDAERHSLKARLEKLLPAGSPKGYIIRTSAETARDDELAADIEYLSKLWSDIQQKS 209

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+      +++V   + Y    +F +  +      + +Y
Sbjct: 210 QTLPPQSLLYDDLPLAVRVLRDMVSGYTDKVLVDSNENYGRMVEFAEQYVQIAVDKIERY 269

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F   GIE ++D      V L   GY+I++QTEA+ +IDVN+G        ++T 
Sbjct: 270 AGERPLFELHGIETEIDKALARRVNLKFGGYLIVDQTEAMTTIDVNTGGFVGNRNFDETI 329

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA + IARQLRLR+L G+++VDFIDM+  ++  +V  +L +++ +DR RV +   
Sbjct: 330 FKTNLEATQVIARQLRLRNLGGIVIVDFIDMDNDEHQAAVLAELAKAMARDRTRVTLNGF 389

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R S+     + C  C+G G I++  +V   I R +     QY A   
Sbjct: 390 TSLGLVEITRKRTRESLAHILCEPCPTCQGRGEIKTAQTVCYEIQREIVREARQYDAKGY 449

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V+   L+++  ++       G  +++ +      + F +
Sbjct: 450 RILAAQSVIDMFLDEESQSLAMLVDFIGKPVSLSVEASYTQEQFDV 495


>gi|88704056|ref|ZP_01101771.1| ribonuclease G [Congregibacter litoralis KT71]
 gi|88701883|gb|EAQ98987.1| ribonuclease G [Congregibacter litoralis KT71]
          Length = 484

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 205/398 (51%), Gaps = 2/398 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I + ++  Q++ VQ+VK+    KGA +T+ LS++ RY V MP +       R        
Sbjct: 84  IADHLREGQMVTVQVVKDPISKKGARLTSQLSVSTRYLVYMPKSDHLGISQRIDEVEERA 143

Query: 230 KNL--KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           +       A   E   G G I+RTA     + EI  D  +L RLW  V      +  P L
Sbjct: 144 RLQAVLTAALESESMTGGGFIVRTAAEGAGESEILADLRFLKRLWAVVSRRVSEARGPEL 203

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YE+  L  RA+RDL    +  I+V     Y    DF    MP  A +V  YE   PIF 
Sbjct: 204 LYEDLPLQLRAVRDLARPGVQRILVDSHDNYGVLNDFCLKYMPEVADLVELYEGERPIFD 263

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             G+E  +       V L S G+++I+QTEA+ +IDVN+G        E+T  +TNLEA 
Sbjct: 264 LHGVEEDIQRALARVVPLKSGGHLVIDQTEAMTTIDVNTGSFVGRRNQEETLFKTNLEAV 323

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
             +ARQLRLR+L G+I+VDFIDM + ++ R V + L++++ +D AR ++  +S  GL+EM
Sbjct: 324 SVLARQLRLRNLGGIIIVDFIDMSDGEHRRQVHRALEKAMSRDPARNKISGVSALGLIEM 383

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+  +  + C  C+G G ++S  +V   ILR +      Y    ++V     V
Sbjct: 384 TRKRSRESLERTLCEDCPNCEGRGVLKSAETVCYEILREIMRDARAYETGGLLVLASQAV 443

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  LL+++ A + + E+    SI+     +   + F I
Sbjct: 444 VERLLDEESAHVGDLESFIERSISFRAEPDYTQEQFDI 481


>gi|301309508|ref|ZP_07215450.1| ribonuclease G [Bacteroides sp. 20_3]
 gi|300832597|gb|EFK63225.1| ribonuclease G [Bacteroides sp. 20_3]
          Length = 525

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 129/582 (22%), Positives = 241/582 (41%), Gaps = 63/582 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + VL D  + EL  E+ +     G+IYL KV ++ P L AAF+D
Sbjct: 1   MISELVVDV-QPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI-AQTDSEAVADDVTHGDVTIPNDHS 119
            G  +  FL +L++ P++       +Q L         + ++ + +   +G ++      
Sbjct: 60  VGYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVG 119

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
            E +  IA     T+   + S                       F  +Y +     ++  
Sbjct: 120 QEVLVQIAKEPISTKGPRLTSE--------------------LSFAGRYIVLIPFADKVS 159

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           +  +I   E   +   +   +                  I R  +       L    + L
Sbjct: 160 VSTKIKSSEERARLRQLIQSIKPKNFSV-----------IVRTSSEGKRVAELDHELKTL 208

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                                            ++         AP +VYEE       +
Sbjct: 209 VKRW-----------------------------EDNIVKVPKLKAPAIVYEETARTVALL 239

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD++      I V+ ++ Y   +D++ L+ P    IV+ Y    PIF    +  Q+ SL 
Sbjct: 240 RDIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFDNFAVTKQIKSLF 299

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              VT  S  Y+II  TEA+  IDVNSG  ++    ++ TA+  N+ AA+EIARQLRLRD
Sbjct: 300 GRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRD 359

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IV+DFIDM E  N + + + + +++  DRA+  +  +S FGL++++RQR+R ++  
Sbjct: 360 MGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDV 419

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            T++ C  C G G ++       S+   ++  + ++      +H H  V  Y+       
Sbjct: 420 DTSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLFPL 479

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
            ++++ ++   + V+    LA   +        +  +    +
Sbjct: 480 SMKWKMKYTHGLKVIPNQSLAFLEYKFFDADKNELDMKEEKE 521


>gi|319793384|ref|YP_004155024.1| ribonuclease, rne/rng family [Variovorax paradoxus EPS]
 gi|315595847|gb|ADU36913.1| ribonuclease, Rne/Rng family [Variovorax paradoxus EPS]
          Length = 508

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/420 (28%), Positives = 206/420 (49%), Gaps = 12/420 (2%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
           PE   +       I++ +   Q LLVQ++K+  G KGA ++T +S+AGR  V +P  +  
Sbjct: 87  PERDHRNGGPMVPIEKQVFEGQSLLVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDNHI 146

Query: 217 ETISRKITNPVDRKNLKEIARGLE-----------VPAGMGVILRTAGASRTKIEIKRDF 265
             +S+KI +         +   +E                G ILRT G   +  E+  D 
Sbjct: 147 G-VSQKIPSEQRESLRTRMLTLIEAAAAADSGGVVPSNTGGFILRTNGEDSSDAELAEDI 205

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
            YL + W  +R+ +    A  L++++ +L++R +RD+  +D   I +   + +     F 
Sbjct: 206 GYLRKTWSRIRDASSKLPAMSLLHQDLSLLQRVLRDMTSEDTQTIRIDSREQFEVLLKFG 265

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
              MP  A  ++ Y+   PIF    ++ ++       V L S GY++++QTEAL ++DVN
Sbjct: 266 LEFMPQAAGKLQHYKGERPIFDLYSVDEEIAKALGRRVELKSGGYLVVDQTEALTTVDVN 325

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           +G        +DT  +TNLEAA+ IARQLRLR+L G+I+VDFIDM    +   V  + ++
Sbjct: 326 TGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMGRDDHREQVLAEFRK 385

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
            L +DR +   G  S  GL+EM+R+R R S+     + C  C G G +++  SVA  ++R
Sbjct: 386 QLARDRVKTTAGGFSQLGLVEMTRKRTRESLAHMLCEPCAACGGQGIVKTARSVAYDVMR 445

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     Q+T     + +   V+   L+++   +       G  I++     +    + I
Sbjct: 446 EILREARQFTPREFRIVSSPQVIELFLDEESQHLAGLSDFIGKPISLQSEPAIGQGQYDI 505


>gi|90407760|ref|ZP_01215938.1| Ribonuclease G and E [Psychromonas sp. CNPT3]
 gi|90311120|gb|EAS39227.1| Ribonuclease G and E [Psychromonas sp. CNPT3]
          Length = 490

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/414 (27%), Positives = 195/414 (47%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    K   +   I E+++  Q ++VQ+VK+  G KGA +TT +++  RY V MP 
Sbjct: 76  HTECVAQTEKVKFKVADISELVRQGQDIMVQVVKDPLGTKGARLTTDITVPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R  ++    +   +      +    G I+RTA     + E+  D  +L R+W
Sbjct: 136 SSHVGVSQRIASSSERDR--LKAITQTCINELGGFIIRTAAEGAPENELTHDAAFLQRVW 193

Query: 273 DNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
             V +          L+Y++  L  R +RD    +I  + +  +  + E + F    +P 
Sbjct: 194 AKVLKRRARFKSKNKLLYQDLGLAFRILRDFVGTEIDRVRIDSKLKFTELQKFTHEFVPE 253

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               +  Y    PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G    
Sbjct: 254 LEDKIEYYSGESPIFDLFDAENEVQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 313

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T   TN+EA + IARQLRLR+L G+I++DFIDM+   + R V   L+ +L KDR
Sbjct: 314 HRNLEETIFNTNIEATQAIARQLRLRNLGGIIILDFIDMQSNDHKRRVFTSLELALSKDR 373

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            +  +   S  GL+EM+R+R + S+       C  C G GY+++  +V   +LR +    
Sbjct: 374 VKTHINDFSPLGLIEMTRKRTQESLEHIFCSPCEQCNGRGYVKTVETVCYEVLREILRVN 433

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             Y A +  V+T   V   L   +  ++ E        + +        + F +
Sbjct: 434 RAYDAEHFAVYTSPAVADALRGDESHSLGELILFMSKEVTIYAEPLYGQEQFDV 487


>gi|332184363|gb|AEE26617.1| Ribonuclease E [Francisella cf. novicida 3523]
          Length = 886

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 181/599 (30%), Positives = 305/599 (50%), Gaps = 5/599 (0%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LW+++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + + K  
Sbjct: 181 FDTLVELWESISKAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + LL  S+    V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +I+E E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIIEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
            +++          T  ++  D       K  +       L    ++++      +I  +
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKVAAVDLNQAIENQATNQANSSIQEQ 540

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
                 +     +  ++              + + + I  +     + ++         
Sbjct: 541 NPQTDTQVNTAMQNDKKQDAVTQQTNKKGFFAKLFSSIFGTDSKTTQQANNPGQKQQNK 599



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|332678545|gb|AEE87674.1| Ribonuclease E [Francisella cf. novicida Fx1]
          Length = 885

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 181/610 (29%), Positives = 309/610 (50%), Gaps = 8/610 (1%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + + K  
Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + LL  S+    V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +I+E E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIIEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEKG----SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            +++            +   +   + + P   K           +    + + ++ +   
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKVAAVDLNQAIENQAASNTQEQKPQT 540

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
            ++        +++    ++       A + S + +  +      +   +       N  
Sbjct: 541 DAQVDIATQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 680 ENGAHGFTEN 689
               H   + 
Sbjct: 601 RQQQHNKAQK 610



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|71282114|ref|YP_271204.1| ribonuclease G [Colwellia psychrerythraea 34H]
 gi|71147854|gb|AAZ28327.1| ribonuclease G [Colwellia psychrerythraea 34H]
          Length = 485

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/484 (26%), Positives = 221/484 (45%), Gaps = 12/484 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++  ++ +   E  A     G++ +     +      A      ++ + + A
Sbjct: 11  PSETRVALIENGSLQEVHIERQAKRGIVGNIYLGKVIRVLPGMQAAFVDINLDKAAFLHA 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++     +   +                I+ ++   Q ++VQ+VK+  G+KGA +TT ++
Sbjct: 71  SDINSKLILKEETDQV----------PDIRSLVHEGQHIMVQVVKDPLGSKGARLTTDIT 120

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           +A RY VLMPN+       R        +   +           G I+RTAG    ++++
Sbjct: 121 IASRYLVLMPNSQHAGISLRIENPNERDR--LKDIVTPYCDEQQGFIVRTAGEGADELDL 178

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D E+L R+W  V            +Y++ +L  R +RD    ++  I +     ++E 
Sbjct: 179 QHDAEFLRRVWHKVLARKQRKQTNLPLYQDLSLSFRVLRDFVGINLERIRIDSNLTFQEL 238

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
             F +  +P    ++  Y    PIF    +E ++      ++ L S GY+II+QTEA+ +
Sbjct: 239 TVFTEEFVPELTPLLEYYPGELPIFDLFSVEREIQRALHRKIELKSGGYLIIDQTEAMTT 298

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       + DT   TN+EA + IARQLRLR+L G+I+VDFIDM    + R V  
Sbjct: 299 IDINTGAFVGHRNLADTIFSTNIEATQVIARQLRLRNLGGIIIVDFIDMHNDDHKRRVLH 358

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L  ++ KD+ +  +   S  GL+EM+RQR R S+       C  C G G++++  +V  
Sbjct: 359 SLDMAMSKDKVKYSLHGFSALGLVEMTRQRTRESLEHVLCGECPLCTGRGHLKTVETVCF 418

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +LR +      + A    V+  + V   L+N +   + E E   G  I V        +
Sbjct: 419 EVLREIVRVNRAHDADKFTVYASTAVSNSLVNDEYHNLAEVEVFIGKLIKVQAEPMYNQE 478

Query: 562 LFYI 565
            F +
Sbjct: 479 QFDV 482



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV ++ +  ++E+  E + K+ I GNIYL KV RV P +QAAFVD
Sbjct: 1  MSAELLINVT-PSETRVALIENGSLQEVHIERQAKRGIVGNIYLGKVIRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
             ++  FL   +I+ 
Sbjct: 60 INLDKAAFLHASDINS 75


>gi|254373188|ref|ZP_04988677.1| ribonuclease E [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570915|gb|EDN36569.1| ribonuclease E [Francisella novicida GA99-3549]
          Length = 885

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 181/610 (29%), Positives = 309/610 (50%), Gaps = 8/610 (1%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + + K  
Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + LL  S+    V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +I+E E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIIEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEKG----SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            +++            +   +   + + P   K           +    + + ++ +   
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKVAAVDLNQAIENQAASNTQEQKPQT 540

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
            ++        +++    ++       A + S + +  +      +   +       N  
Sbjct: 541 DAQVDIATQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 680 ENGAHGFTEN 689
               H   + 
Sbjct: 601 RQQQHNKAQK 610



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|224369812|ref|YP_002603976.1| Rne2 [Desulfobacterium autotrophicum HRM2]
 gi|223692529|gb|ACN15812.1| Rne2 [Desulfobacterium autotrophicum HRM2]
          Length = 487

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 171/421 (40%), Positives = 254/421 (60%), Gaps = 1/421 (0%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
             +     +    +             +++K  Q L+VQ+ K+   +KGA +TT++SL G
Sbjct: 64  EKNGFLQKQEIHSDYFLDNDSGDRSFSKLVKKGQELIVQVTKDPIMHKGAMLTTFISLPG 123

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R SV MP +S    +SR+I +  +R+ LKEI   L++P G G+I+RTAG   TK  +  D
Sbjct: 124 RLSVFMPGSSTRG-VSRQIDDEAERRRLKEITEKLKLPEGFGLIVRTAGLDATKTMLTND 182

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
             YLMR W  + + A+N   P L+Y+E NL  R++RD +  DI+EI++     Y+E KDF
Sbjct: 183 TRYLMRAWKEINKKAVNEPTPSLLYKEQNLAVRSLRDYFTADITEILIDDPDVYKEVKDF 242

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           MK++ P   +IV+ Y+   PIF +  IE Q+ S+ +T+  L S G ++I+QTEALV+IDV
Sbjct: 243 MKVIAPKQEKIVKPYKGEKPIFTKYQIEEQIASIFETKALLKSGGAIVIDQTEALVAIDV 302

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           NSG+ST    IE TA  TN+EAAEE+ARQLRLRD+ GLIV+DFIDM+EKK+   V K LK
Sbjct: 303 NSGKSTGRKNIEQTAFHTNIEAAEEVARQLRLRDMGGLIVIDFIDMKEKKHKAEVTKTLK 362

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
             LK D+A+ +VG IS FGL+EMSRQ+IRS++   + + C +CKG G + +  ++  ++L
Sbjct: 363 RFLKSDKAKTKVGGISAFGLVEMSRQKIRSAITFGSFETCKHCKGRGLVPNTETLGHALL 422

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R +    ++     +       V  YLLN+KR  +V  EA+  V++ +     L      
Sbjct: 423 RKLSLETIKAENKTVKALVPEKVASYLLNKKREELVNIEAKRNVTLVIESDDSLLLGESR 482

Query: 565 I 565
           I
Sbjct: 483 I 483



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 54/79 (68%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  K+LI+A   +E R+V ++DN++E    E+  +K  +GNIY   +TRVEPSLQA FVD
Sbjct: 1  MTTKILINALDSDECRIVQIKDNKLEGFHIETAARKVTQGNIYKGVITRVEPSLQAVFVD 60

Query: 61 YGGNRHGFLPFLEIHPDYY 79
          YG  ++GFL   EIH DY+
Sbjct: 61 YGTEKNGFLQKQEIHSDYF 79


>gi|118497831|ref|YP_898881.1| ribonuclease E [Francisella tularensis subsp. novicida U112]
 gi|194323804|ref|ZP_03057580.1| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208779895|ref|ZP_03247239.1| ribonuclease, Rne/Rng family protein [Francisella novicida FTG]
 gi|254374642|ref|ZP_04990123.1| ribonuclease E [Francisella novicida GA99-3548]
 gi|118423737|gb|ABK90127.1| ribonuclease E [Francisella novicida U112]
 gi|151572361|gb|EDN38015.1| ribonuclease E [Francisella novicida GA99-3548]
 gi|194322168|gb|EDX19650.1| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208744350|gb|EDZ90650.1| ribonuclease, Rne/Rng family protein [Francisella novicida FTG]
          Length = 885

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 187/652 (28%), Positives = 319/652 (48%), Gaps = 22/652 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144
           + +L  S   +    A  D+    D+ I +    ++ A I        E S+ +   N  
Sbjct: 2   KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N         E   K       I  ++   Q L+VQI KEERG+KGAA+TT+++LAG
Sbjct: 62  EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            Y VL+PN  +G  ISR++      + LK+  + L +P  M VI RTA    +  E+K D
Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           F+ L+ LW ++ +       P L+++E ++I R +RD   +D+ EIIV  ++ + + K  
Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240

Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + LL  S+    V+ Y +  P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID
Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VNS R+ +   +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM    N + VE+KL
Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L++DRAR+Q+  IS  GL+E+SRQR+ SS+ ES  + C  C+G G+I++  + AL+I
Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR +    ++   + I V    D+  Y+LN+KR +IVE E    V + ++    +    F
Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480

Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612
            +++              L+   + +          +     + +    A     +    
Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665
           +   D +   +       ++ +++            TD   A   ++ +  Q   + +F 
Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              + +     N   N  +      + +    +          + P    ++
Sbjct: 601 RQQQHNKAQKDNNQRNERNNNNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++   EETR+  L + ++ +LD ES  ++Q K NIY   ++R+EPSL A FV+YG
Sbjct: 2  KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLPF E+  +YY
Sbjct: 62 EEKNGFLPFKEV-SEYY 77


>gi|225175160|ref|ZP_03729156.1| ribonuclease, Rne/Rng family [Dethiobacter alkaliphilus AHT 1]
 gi|225169336|gb|EEG78134.1| ribonuclease, Rne/Rng family [Dethiobacter alkaliphilus AHT 1]
          Length = 557

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 120/586 (20%), Positives = 223/586 (38%), Gaps = 84/586 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  K++I+  + ++TRV VL +++  E+  E    +++ GNIY   V  V P +QAAFVD
Sbjct: 1   MQKKIVINCDN-KQTRVAVLEEDKPVEIYLERPVHQRVVGNIYKGVVANVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R+ FL   +              ALL E +      + + + +  G+  +      
Sbjct: 60  IGLERNAFLYVDD--------------ALLPEESNNSRGKKKIEELLRPGEEVMVQVVKE 105

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
              +  A  +++                    +     D  ++   +  I E+      L
Sbjct: 106 PFGSKGARLTRQITIPGRHLVLMPSAEYTGVSRRIEDPDERERL--RQIIAEIRPEGHGL 163

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +V+ V E   +          L                    + + +  +  ++ A  L 
Sbjct: 164 IVRTVAEGLDDDAFRQDLQFLLP-------------------LWDRIQNRFRQKQAPSLI 204

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                               I+  F   +             +   L   + +L+ R   
Sbjct: 205 YQD----------LDLIYRMIRDLFTEQIEQLVVDTRYEYEKIQEALDVVDSSLVNRV-- 252

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                                                 Y    P+F   GIE +++    
Sbjct: 253 ------------------------------------YYYSGDEPVFDVYGIEAEIERALS 276

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L   GY++ + TEAL  IDVN+G+   +  + DT  +TNLEAA EI RQ+RLRD+ 
Sbjct: 277 RTVWLDCGGYLVFDHTEALTVIDVNTGKYIGKTNLADTVFKTNLEAATEIIRQVRLRDIG 336

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+ +++ R V +KL E  K+DR +  +  ++  GL+EM+R++ R  +    
Sbjct: 337 GIIIIDFIDMDNEEHRRLVLEKLTEKAKEDRTKSHILGLTGLGLVEMTRKKARQGLDAVL 396

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C YC G G + +   V+    R ++ YL    +  ++V  +  V   L+    + + 
Sbjct: 397 QQTCPYCHGRGKVLTADVVSARTERQLKSYLNGLDSEAVLVEMNQSVAGLLIGPGGSYLR 456

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
           + E   G +I +     +  +  ++     +  +    + V    +
Sbjct: 457 KLEEETGKTIFIRGSETMHVEKHHVLATGSLSEVQELAYPVTVGER 502


>gi|253998331|ref|YP_003050394.1| Rne/Rng family ribonuclease [Methylovorus sp. SIP3-4]
 gi|313200405|ref|YP_004039063.1| Rne/Rng family ribonuclease [Methylovorus sp. MP688]
 gi|253985010|gb|ACT49867.1| ribonuclease, Rne/Rng family [Methylovorus sp. SIP3-4]
 gi|312439721|gb|ADQ83827.1| ribonuclease, Rne/Rng family [Methylovorus sp. MP688]
          Length = 485

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/411 (29%), Positives = 217/411 (52%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              E       ++  IQEV+   Q ++VQ++KE  G KGA +TT +S+AGR+ V +P   
Sbjct: 72  DVLECANSDKDKEKTIQEVLHEGQPIMVQVIKEPIGTKGARLTTQISIAGRFLVYLPQQQ 131

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 R           + + + L      G I+RT   + T  E+  D +YL ++W N
Sbjct: 132 HIGVSQRIEDEAEREFLKERLLKLLPENRQGGYIIRTMSETATDDELLADVDYLNKVWSN 191

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++  +  +    LV+++ +L  R +RD+  +D   ++V   + Y++  +F +       +
Sbjct: 192 IQAASHGAADRSLVFQDLSLPMRVLRDVVNEDTDRVLVDSRETYQKLLEFGQHYAIGAVK 251

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y+   P+F    +E +++     +V + S GY+I +QTEAL ++DVN+G       
Sbjct: 252 KLEHYQGERPLFDMYHVEQEIERAMSRKVEMKSGGYLIFDQTEALTTVDVNTGGFVNGRS 311

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           + DT  +TNLEA++ IARQLRLR+L G+I++DFIDM+E ++  +V  +LK +L KDRAR 
Sbjct: 312 LADTIFKTNLEASQCIARQLRLRNLGGIIIIDFIDMDEDEHRVAVLDELKRALAKDRART 371

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            +   S  GL+EM+R+R R S+     + C  C+G G I++  ++   ILR +  +  Q+
Sbjct: 372 GISGFSALGLVEMTRKRTRESLAHILCEPCPACQGRGEIKTAQTICYEILRELLRHARQF 431

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           TA  + V     V+  LL+++  ++       G  +++    +   + F I
Sbjct: 432 TARELRVLASPKVIDLLLDEESQSLANLSDFIGKPVSLQAETQYPQENFDI 482


>gi|168699596|ref|ZP_02731873.1| ribonuclease E [Gemmata obscuriglobus UQM 2246]
          Length = 987

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 167/461 (36%), Positives = 262/461 (56%), Gaps = 6/461 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G  P+    +   +  IQE+ K  Q ++VQ++KE  G KG  ++TY+S+AGRY VLMP+ 
Sbjct: 526 GSGPKGGRDRGLPKPPIQEIFKRGQEVIVQVIKEAVGTKGPTLSTYVSIAGRYLVLMPSL 585

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           ++   +SRKI +   R+ L+EI   L  P G+G I+RTA   R   E++ D  YL+RLW 
Sbjct: 586 NRVG-VSRKIEDHDARRRLREIMSTLAPPKGVGFIVRTAAVDRDAKELQNDLAYLLRLWQ 644

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            V +       P  +Y E ++I R IRD++  DI  I V     +  A +F++++MP +A
Sbjct: 645 VVVKRLKRVAGPVEIYRESDMITRTIRDIFTSDIDTIWVDEANAFGHASEFLQIVMPKFA 704

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ ++   P+F +  IE ++  +HQ  + +P  G ++I QTEALV+IDVNSG    ++
Sbjct: 705 NRIKHFDHTEPLFHKYSIEEEIAKIHQKRIEMPLGGSLVIEQTEALVAIDVNSGNFRADN 764

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
             E+TA Q NL AA+EIARQLRLRDL G+IV DFIDM  + + R VE   +E+L++DRAR
Sbjct: 765 NAEETAFQMNLHAAKEIARQLRLRDLGGVIVNDFIDMRSESHRRKVEDAFREALRRDRAR 824

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
            ++  IS FGL+EM+RQRIR S+  S    C +C+G G++++  S+A+ ++R +     +
Sbjct: 825 TKILRISQFGLIEMTRQRIRPSLKRSIFADCPHCRGNGFVKTSESLAIEVMRLLHLAAHR 884

Query: 514 YTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKG 568
             A   + V  H+D   YLLN+KR  I   E R  + +N+     ++ +   I      G
Sbjct: 885 APAVQLVQVAVHTDAASYLLNKKRKEIAALEERGKLEVNITGQPGISPEALTIRCFDHNG 944

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           + V+ L        S  + P  D       +++     P+ 
Sbjct: 945 NEVRLLPPAPLPKLSAGRIPPRDDRRSGGGREDRGARYPRP 985



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLI+    EE R+ ++ D  +EEL  E   ++   GNIY  ++  +EPS+QAAFVD
Sbjct: 1   MKKEMLINVLQPEECRIAIVEDGVLEELYVERASQESYVGNIYKGRIVNIEPSIQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +G  R+GFL   ++ P YY+   S  +A L E           A      D         
Sbjct: 61  FGIGRNGFLHVSDVDPAYYKHLLS--KADLAEYEAELEREYGSAPGGGGRDRGARGGRGR 118

Query: 121 EEVAPIANFSQETEEESIISANNDV 145
           +             E    +A N+ 
Sbjct: 119 DRGPKPPREMTSWLEPQPAAARNED 143


>gi|226939011|ref|YP_002794082.1| CafA [Laribacter hongkongensis HLHK9]
 gi|226713935|gb|ACO73073.1| CafA [Laribacter hongkongensis HLHK9]
          Length = 506

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 134/497 (26%), Positives = 237/497 (47%), Gaps = 6/497 (1%)

Query: 75  HPDYYQIPFSDRQALLKESNIA-----QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANF 129
           HP    IP   R ++     I      Q    AV +D    ++ I  + S   V  I   
Sbjct: 7   HPTAQPIPLPSRDSVRLAEKILVNITPQETRVAVLEDNVVQELHIEREASRGIVGNIYLG 66

Query: 130 SQETEEESIISANNDVV-SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
             +     + SA  ++       +      +  +       I++++   Q ++VQ++K+ 
Sbjct: 67  KVKRVLPGMQSAFIEIGLERAAFLHIADILEQRQHPTEPQRIEKMLFEGQTVMVQVIKDP 126

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
            G KGA ++T +SLAGR+ VL+P  +      +  ++       + +   L      G I
Sbjct: 127 IGTKGARLSTQISLAGRFLVLLPQEAHIGVSQKIESDTDRSGLRQRLEALLPETGPRGYI 186

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +RT+  S T  E+  D EYL R+W+ V+       A  L+Y++  L  R +RD+      
Sbjct: 187 IRTSAESATDGELAADVEYLSRMWEVVKSRGATMPAQSLLYQDLQLALRVLRDMVSDTTE 246

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
           +++V   + Y +  +F +  +      + +Y    P+F   GIE +++      V L   
Sbjct: 247 KVVVDSTENYGKMVEFAQQYVAQSLPKIERYAGERPLFELHGIETEVERALARRVNLKFG 306

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
           GY+I++QTEA+ +IDVN+G        ++T  +TNLEA   IARQLRLR+L G+I+VDFI
Sbjct: 307 GYLILDQTEAMTTIDVNTGGFVGVRNFDETIFKTNLEATHAIARQLRLRNLGGIIIVDFI 366

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488
           DM+ + + + V ++L  SL +DR RV +   ++ GL+E++R+R R S+     + C  C+
Sbjct: 367 DMDNEDHRQMVLQELARSLARDRTRVTLNGFTSLGLVEITRKRTRESLSHVLCEPCPVCQ 426

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           G G I++  +V   ILR V     Q+ A    +     V+   L+++  ++       G 
Sbjct: 427 GRGEIKTAQTVCYEILREVVREHRQFQARGYRILAAQQVIDLFLDEESHSLAMLADFVGK 486

Query: 549 SINVVIGIELADKLFYI 565
            + + +  E   + F +
Sbjct: 487 PVTLQVEAEYNQEQFDV 503


>gi|224826114|ref|ZP_03699217.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002]
 gi|224601751|gb|EEG07931.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002]
          Length = 498

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 213/407 (52%), Gaps = 2/407 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I++++   Q +LVQ++K+  G KGA ++T +SLAGR+ V +P       I
Sbjct: 90  QRQHPSEPQRIEKMLFEGQTVLVQVIKDPIGTKGARLSTQISLAGRFLVHLPQEEHIG-I 148

Query: 220 SRKITNPVDRKNLKEIARGLEVP-AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           S+KI N  DR +LK     L       G I+RT+  + +  E+  D  YL +LW ++R+ 
Sbjct: 149 SQKIENEEDRLSLKARLEKLLPDGTPKGYIIRTSAETASDQELAADIGYLGKLWTDIRQR 208

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
           +L      L+YE+  L  R +RD+  +    +IV   + Y    +F +  + +    + +
Sbjct: 209 SLTEPPQSLLYEDLPLAVRVLRDMVSESTEHVIVDSTENYSRMVEFAEQYVTNAVDKIAR 268

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y    P+F   GIE ++D      V L   GY+II+QTEA+ +IDVN+G        ++T
Sbjct: 269 YSGERPLFELHGIEAEIDRALARRVNLKFGGYLIIDQTEAMTTIDVNTGGFVGNRNFDET 328

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEA   IARQLRLR+L G+I+VDFIDM+ +++   V  +L +++ +DR RV +  
Sbjct: 329 IFKTNLEATHAIARQLRLRNLGGIIIVDFIDMDNEEHRSQVLNELAKAMARDRTRVTLNG 388

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            ++ GL+E++R+R R S+     + C  C+G G I++  +V   I R +     Q+ A  
Sbjct: 389 FTSLGLVEITRKRTRESLAHVLCEPCPTCQGRGEIKTAQTVCYEIQREIVREARQFDAKG 448

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +     V+   L+++  ++       G  I++ +      + F +
Sbjct: 449 FRILAAQPVIDMFLDEESQSLAMLVDFIGKPISLSVETTYPQEQFDV 495


>gi|91203270|emb|CAJ72909.1| strongly similar to ribonuclease E (RNase E) [Candidatus Kuenenia
           stuttgartiensis]
          Length = 509

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 170/474 (35%), Positives = 288/474 (60%), Gaps = 4/474 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+L+ + + +   E  + +   G++      ++E     A      ++   + A
Sbjct: 18  PEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDIGLKKNGFLHA 77

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ +V +    +G   +  P +  R   I++V++  + +LVQ+ KE  G KG ++TTY+S
Sbjct: 78  SDVLVPSEGKNQGEEADPPPVRHHR---IRDVLQQGKEILVQVTKESLGTKGPSLTTYIS 134

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP   +   +S+KIT   +R+ LK+I   L  P  +G I+RTAG  +TK E+
Sbjct: 135 LPGRYLVLMPEVKRYG-VSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQQTKREL 193

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++DF YL++LW N+ + +    AP ++Y+E +L+ R IRD++ +DI+EIIV  E  ++  
Sbjct: 194 QKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSESVFKRT 253

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           ++F++++MP Y + ++ Y    P+F   GIE  ++ ++  ++ L   G +++ QTEALV+
Sbjct: 254 REFLRIIMPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQTEALVA 313

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+   +   E+TA +TN+ AA+EIARQ+RLRDL G+IV+DFIDM  +K+ ++VEK
Sbjct: 314 IDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKHIQAVEK 373

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            + +SLK+ RAR ++  +S FG +E++RQRIR S+ +   + C +C G GY ++  S+ L
Sbjct: 374 AIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKTVESLCL 433

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
           +I+R V+  L       I + +++DVV YL NQKR  + E E  +   I +   
Sbjct: 434 NIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNKKIVIFTD 487



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 1  MAN------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54
          M        +MLI+A   EE R+ +L +N +EEL  E   ++QI GNIY  +V  +EP+L
Sbjct: 1  MEKTTKTKTRMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNL 60

Query: 55 QAAFVDYGGNRHGFLPFLEI 74
          +AAFVD G  ++GFL   ++
Sbjct: 61 EAAFVDIGLKKNGFLHASDV 80


>gi|330831349|ref|YP_004394301.1| ribonuclease G [Aeromonas veronii B565]
 gi|328806485|gb|AEB51684.1| Ribonuclease G [Aeromonas veronii B565]
          Length = 489

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 209/413 (50%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAVKEKEQFQVGNIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           ++      R  +     +  + +A  ++     G I+RTA     ++E+++D  +L RLW
Sbjct: 136 SAHVGVSQRIESEAERERLKRTVAGYVDEL--GGYIIRTAAEGVGELELEQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E         ++YE+ +L  R +RD    ++ +I V   + + + K F    +P  
Sbjct: 194 RKILERKQKYPPCKILYEDPSLAFRVVRDFVGAELDKIRVDSRQSFDQLKRFTGEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 ANKLEYYPGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA   IAR LRLR+L G+I++DFIDM+ + + R V   L+++L KDRA
Sbjct: 314 RNLEETIFNTNVEATAAIARHLRLRNLGGIIIIDFIDMQSEDHRRRVLHSLEQALSKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  CKG G +++  SV   ILR +     
Sbjct: 374 KTNVNGFSQLGLVEMTRKRTRESLEHVLCSECPECKGRGRVKTVESVCFEILREIIRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A    V+    V  YL  ++  ++ E E   G  + VV       + F +
Sbjct: 434 AYDADQFTVYAAPAVADYLHGEESHSLAELEVFIGKQVRVVSEPLCGQEQFDV 486


>gi|88811884|ref|ZP_01127137.1| Ribonuclease E and G [Nitrococcus mobilis Nb-231]
 gi|88790768|gb|EAR21882.1| Ribonuclease E and G [Nitrococcus mobilis Nb-231]
          Length = 488

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 125/396 (31%), Positives = 222/396 (56%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I +++K +Q +LVQ++K+  G KGA +TT++++  R  VL+P+       +R        
Sbjct: 90  ITDLLKEQQHVLVQVIKDPIGTKGARLTTHITIPSRLMVLLPDNPTVGISARIEEEAERA 149

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +  +     +    G G ILRTA    T+  ++ D ++L +LW +++  +  +    L++
Sbjct: 150 RLRRIGEAFVAAGEGCGYILRTAAEGATEEALRCDRDFLGKLWKSIQVRSDLAQPETLIH 209

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            +  L  RA+RDL  + I+++ V   + Y++ + F +  +P  A ++  Y+   PIF   
Sbjct: 210 GDLPLALRALRDLITEGIAKVWVDSWETYQKVQVFCEQFLPDIAELIEHYQGERPIFDLY 269

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           G+E ++    + +  L S GY+II+QTEA+ +IDVN+G       +E+T  +TNLEAA+ 
Sbjct: 270 GVEDEIQRALERQTQLKSGGYLIIDQTEAMTTIDVNTGGYVGHRTLEETIFKTNLEAAQA 329

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDMEE+ + R V + L+++L++D  + Q+  +S  GL+EM+R
Sbjct: 330 IARQLRLRNLGGIIIIDFIDMEEEDHRRQVLRALEKALERDHVKTQISGVSALGLVEMTR 389

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+     + C  C G G +++  +V   I R +     Q+    ++V T  +VV 
Sbjct: 390 KRTRESLERVLCEPCRTCAGRGSLKTAETVCYEIAREILREARQFDVQKLLVLTSQEVVD 449

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +L+Q+  T+ E E+  G  I          + F +
Sbjct: 450 LILDQESDTLAELESFIGKPIEFQAEPLYTQEQFDV 485


>gi|298373678|ref|ZP_06983667.1| ribonuclease G [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274730|gb|EFI16282.1| ribonuclease G [Bacteroidetes oral taxon 274 str. F0058]
          Length = 516

 Score =  266 bits (679), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 143/563 (25%), Positives = 252/563 (44%), Gaps = 63/563 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +++IDA + E   + +L + ++ E   +   +    GNIYL KV ++   L A      
Sbjct: 2   KELIIDA-NNENVSIALLENKKLVEYAKDDLQQSYDVGNIYLGKVKKIMSGLNA------ 54

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
                   F++I                                                
Sbjct: 55  -------AFVDIG----------------------------------------------- 60

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
               A        E+  + NN V   + D K     +      +   I+ V+   Q++LV
Sbjct: 61  GNKEAFIHYHDLGENFPTINNFVQKILNDRKRMPKFEKLPPLNKDGQIRSVLTAGQLILV 120

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q+ KE    KGA ++  +S+AGR+ V+MP T    ++S KI+N  ++  L+++   ++ P
Sbjct: 121 QVTKEPISTKGARLSGEISIAGRFMVMMPCTDNKTSVSSKISNREEKVRLRQLVHSIK-P 179

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
               +I+RT    +   E+  + + L   W+   +    S    L+ +E + +   +RD 
Sbjct: 180 NDYSLIIRTIAEGKKVAELDNELKILKTRWEKTIDSLRKSKEVGLLSQESSRVVSIVRDF 239

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              D  +I ++  K + E K++M+L+ P +A IV+ Y+   PIF   G+  Q+       
Sbjct: 240 VDNDYEQIYINEPKTFEEIKEYMQLIAPEHADIVKLYKGEIPIFDHFGVTRQIKVSFGRI 299

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAG 421
           V      Y+ I+QTEA+  IDVNSG   R     ED AL+ NL AAEEI RQLRLRD+ G
Sbjct: 300 VPFKRGAYLTIDQTEAMFVIDVNSGTRVRATQNPEDNALEVNLLAAEEIFRQLRLRDIGG 359

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +IV+DFIDM+ K N   V +++ + +K+DRAR  +  +S F ++E++RQRIR ++  +T 
Sbjct: 360 IIVIDFIDMDNKANMAKVYERMHQLMKQDRARHNILPLSKFCVMEITRQRIRPTISIATD 419

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541
           + C  C G G  +        +   +++ +         +  H  +  YL     +  ++
Sbjct: 420 ETCPTCFGTGKSKPSILFTTQLEDKIDKIVNTLKIKKFTLCIHPFIAAYLNKGLISEKLK 479

Query: 542 YEARFGVSINVVIGIELADKLFY 564
           ++ ++     ++   EL    + 
Sbjct: 480 WKTKYSWGFRLLPMEELGFLQYK 502


>gi|88799729|ref|ZP_01115303.1| Ribonuclease G and E [Reinekea sp. MED297]
 gi|88777463|gb|EAR08664.1| Ribonuclease G and E [Reinekea sp. MED297]
          Length = 486

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 123/421 (29%), Positives = 213/421 (50%), Gaps = 2/421 (0%)

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
                +     +      +    IQ +++  Q L+VQ++K+  G KGA +TT LS+  RY
Sbjct: 63  ERAAFIHASDIDHDRTDHESHKPIQSLVREGQALVVQVIKDPIGTKGARLTTALSIPSRY 122

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLK--EIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            V MP ++      R        +  K  +  + LE     G ILRTA     + EI+ D
Sbjct: 123 LVFMPASNHIGVSQRIDGEEERDRLKKLVDHTKTLEEIEQGGFILRTAAEGVGEGEIRSD 182

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
             YL R++  ++E    +    ++YE+  L  R  RD+   D+ +I +  ++ + + +DF
Sbjct: 183 MNYLKRVFRVLQERMTENEPATMIYEDLPLFLRVARDMIRVDVEKIRIDSKETFVKVQDF 242

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           +    P    +   Y    P+F    +E ++      +V L S GY+II+QTEA+ +IDV
Sbjct: 243 VTKYTPEVVDLFEYYPGERPVFDLFAVEDEISRALSRKVELKSGGYLIIDQTEAMTTIDV 302

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G       +E+T  +TNLEA   I RQLRLR+L G+I++DFIDME++++ R V + L+
Sbjct: 303 NTGAFVGHRNLEETIFKTNLEAVSAICRQLRLRNLGGIIILDFIDMEDEEHRRQVHRMLE 362

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + L++D A+ +V  +S  GL+EM+R+R R S+    T+ C+ C+G G  ++  ++   + 
Sbjct: 363 KHLERDHAKSKVTGVSELGLVEMTRKRTRESLEHVLTENCSVCQGKGRQKTAQTICYEVF 422

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R +      Y     +V     VV  LL+++ + + + E   G  I   +      + F 
Sbjct: 423 REILREERAYNNDQYLVLASQSVVDRLLDEESSNVADLEEFIGKPIRFQVEPMYTQEQFD 482

Query: 565 I 565
           +
Sbjct: 483 V 483



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++L++ +   ETRV ++ +  V+E+  E    + I GNIY  KV RV P +QAAFVD
Sbjct: 1  MTSEILVNVT-PMETRVALVENGAVQEVYIERSQTRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  R  F+   +I  D
Sbjct: 60 IGLERAAFIHASDIDHD 76


>gi|281416869|ref|ZP_06247889.1| ribonuclease, Rne/Rng family [Clostridium thermocellum JW20]
 gi|281408271|gb|EFB38529.1| ribonuclease, Rne/Rng family [Clostridium thermocellum JW20]
          Length = 497

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 128/573 (22%), Positives = 242/573 (42%), Gaps = 79/573 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D     E RV +L D  + EL  E    +++ GNIY  +V  V P +QAAF+D
Sbjct: 1   MVSEIVVDVGI-NEKRVALLEDRELVELFIERNDCERLVGNIYRGRVESVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++ FL   +       IP                D E +  DV   ++        
Sbjct: 60  IGYEKNAFLYVGD------AIPQ----------KEFSEDDEEIYSDVKSYNIEEILRPGQ 103

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E    +      T+                                +      +  RQ++
Sbjct: 104 EITVQVTKEPIGTKGP------------------------------RVTTHITLPGRQMV 133

Query: 181 LVQIVKEERGNKGAA-VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           L+        ++          L      + P       I R ++     ++ K     L
Sbjct: 134 LLPNADYIGISRRIEDEEERAKLRKIAEKIKP--KNMGIIVRTVSEGKREEDFKNDLNFL 191

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                                        ++LW  +++   +   P  ++++ ++I RA+
Sbjct: 192 -----------------------------VKLWAKIKQREQSGPVPRCLHKDLSVIYRAV 222

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD++  +I   +++  + Y +  + ++++ P+    V  +     +F    I+  +    
Sbjct: 223 RDIFTWNIDRFVINDRQEYNKVLELVEMISPALKMRVEYFNKNIDLFEYYQIDSMIQKAL 282

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             +V L   GY++I +TEAL  IDVN+G+    + +EDT L+TNL+A +EI +QLRLRD+
Sbjct: 283 AKKVWLKCGGYIVIERTEALTVIDVNTGKYVGVNNLEDTVLRTNLDAVKEIGKQLRLRDI 342

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDM + ++ + V + LK+ LKKDR +  V  ++  GL+EM+R+++R  +   
Sbjct: 343 GGIIIIDFIDMHDPEHQKQVLEALKQVLKKDRTKTTVVGMTGLGLIEMTRKKVREGLESM 402

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C YC+G G I S  SVA ++ + + +Y  +  A+ I+V  H  V   L  +    +
Sbjct: 403 MLQDCPYCEGRGKILSPESVARNVEKEISKYFTKTIANAIMVEVHPTVAEVLRGEDNDNL 462

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
              +  F   + +    E+  +   I++     
Sbjct: 463 ARIQNLFNKKVIIKPSAEVGHEEVKIKEVDIDT 495


>gi|117619516|ref|YP_854933.1| ribonuclease G [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560923|gb|ABK37871.1| ribonuclease G [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 489

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 209/413 (50%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAVKEKEQFQAGNIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           ++      R  +     +  + +A  ++     G I+RTA     + E+++D  +L RLW
Sbjct: 136 SAHVGVSQRIESEAERERLKRTVAGYVDEL--GGYIIRTAAEGVGEQELEQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E         ++YE+ +L  R +RD    ++ +I V   + + + K F +  +P  
Sbjct: 194 RKILERKQKYPPCKILYEDPSLAFRVVRDFVGAELDKIRVDSRQSFDQLKRFTEEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 ANKLEYYSGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA   IAR LRLR+L G+I++DFIDM+ + + R V   L+++L KDRA
Sbjct: 314 RNLEETIFNTNVEATAAIARHLRLRNLGGIIIIDFIDMQSEDHRRRVLHSLEQALSKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  CKG G +++  SV   ILR +     
Sbjct: 374 KTNVNGFSQLGLVEMTRKRTRESLEHVLCSECPECKGRGRVKTVESVCFEILREIIRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A    V+    V  YL  ++  ++ E E   G  + VV       + F +
Sbjct: 434 AYDADQFTVYAAPAVADYLRGEESHSLAELEVFIGKQVRVVSEPLCGQEQFDV 486


>gi|221066394|ref|ZP_03542499.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1]
 gi|220711417|gb|EED66785.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1]
          Length = 495

 Score =  266 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 229/486 (47%), Gaps = 6/486 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+++   + +   E   +    G+V +     +      A      E     +A
Sbjct: 11  PQETRVAIVENGAVQELHMERPLERGLVGNVYLGKVSRVLPGMQSAFIDIGLE----RAA 66

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
              V    +  + G      +K +    I++ +   Q ++VQ++K+  G KGA ++T +S
Sbjct: 67  FLHVADVWQRQESGEAPMFARKDQPLIPIEKQVFEGQSIMVQVIKDPIGTKGARLSTQIS 126

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           +AGR  V +P         +   N  D  R  L+E+    +   G G ILRT G   +  
Sbjct: 127 IAGRLLVFLPQDDHIGISQKIPQNERDALRARLQELVGTKDGGGGGGFILRTNGEESSDA 186

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E+  D  YL + W  +++ A       +++++ NL++R +RDL  ++   I +   + + 
Sbjct: 187 ELADDIRYLRKTWARIKDTAQKLPVMSVLHQDLNLLQRVLRDLVGENTQSIRIDSREQFA 246

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
             K F +  MP+    +  Y+   PIF    I+ ++       V L S GY+I++QTEAL
Sbjct: 247 LLKSFGQEYMPAAVPKLALYKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEAL 306

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +IDVN+G        +DT  +TNLEAA  IARQLRLR+L G+++VDFIDM  +++   V
Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAHAIARQLRLRNLGGIVIVDFIDMVREEHQGEV 366

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
             + +  L +DR +   G  S  GL+EM+R+R R S+     + C  C G G +++  S+
Sbjct: 367 LSEFRRQLARDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCAACSGKGNVKTARSI 426

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              +LR +     Q+  H   V     VV   L+++   +       G  I++     +A
Sbjct: 427 CYEVLREILREARQFNPHEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMA 486

Query: 560 DKLFYI 565
            + + I
Sbjct: 487 QEQYDI 492


>gi|260061539|ref|YP_003194619.1| Ribonuclease G [Robiginitalea biformata HTCC2501]
 gi|88785671|gb|EAR16840.1| Ribonuclease G [Robiginitalea biformata HTCC2501]
          Length = 523

 Score =  266 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 146/564 (25%), Positives = 247/564 (43%), Gaps = 62/564 (10%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           N+ LI  S+       +L++ ++ EL  + +  K   G+I LAK+ +    L AAFV+ G
Sbjct: 5   NRELIVRSNSNSVDFALLKNGKLIELHKDEDDHKFNVGDIMLAKIRKPVTGLNAAFVNVG 64

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             +  FL + ++ P          +++LK   +A++                        
Sbjct: 65  YEKDAFLHYHDLGPQ--------LKSMLKFLKLARSGRLK-------------------- 96

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
              + NFS E + +   S  + V  N   +     E +  K  R                
Sbjct: 97  DFSLKNFSFEKDIDKNGSIKDVVKPNQTMLVQIVKEPISTKGPR---------------- 140

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
                        +++ LS+AGRY +L+P + +     +  +     +  +        P
Sbjct: 141 -------------ISSELSIAGRYLILVPFSDRVSVSQKIGSKEEKDRLKR--LVKSIKP 185

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G GVI+RT    +   E+ +D E LM  W ++ +    +  P  V  E N     +RD+
Sbjct: 186 KGFGVIIRTVAEGKKVAELDKDLENLMSKWISMCKKINRASTPSKVLVELNRASSILRDV 245

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
           +    S I V  E  + + KD++  + P    IV+ Y    PIF + GIE Q+ +     
Sbjct: 246 FNDSFSGIHVDDETLFNQIKDYVHEIAPDKESIVKLYSSNVPIFEKFGIERQIKTSFGRT 305

Query: 363 VTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
            ++    Y++I  TEAL  IDVNSG RST+    EDTAL+ NL AA E+ARQLRLRD+ G
Sbjct: 306 ASMSKGAYLVIEHTEALHVIDVNSGNRSTKAKNQEDTALEVNLIAAAEVARQLRLRDMGG 365

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +IV+DFIDM    + + +   L++ +K DRA+ ++   S FGL++++RQR+R  V   TT
Sbjct: 366 IIVIDFIDMVRPDHRKKLYNHLRDEMKDDRAKHKILPPSKFGLVQITRQRVRPEVNIKTT 425

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLL-QYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           +V     G   + +   +   I   +E  +  +     I ++ H  +  YL     +   
Sbjct: 426 EVDPSGNGQ-EVEAPIVLIEKISDELERIMKGEGREKAITLNAHPFIAAYLTKGFPSIRS 484

Query: 541 EYEARFGVSINVVIGIELADKLFY 564
           ++   F   I +      +   + 
Sbjct: 485 KWFLEFKKWIKIQPRDAYSYLEYR 508


>gi|264679028|ref|YP_003278935.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2]
 gi|262209541|gb|ACY33639.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2]
          Length = 495

 Score =  266 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 229/486 (47%), Gaps = 6/486 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+++   + +   E   +    G++ +     +      A      E     +A
Sbjct: 11  PQETRVAIVENGAVQELHMERPLERGLVGNIYLGKVSRVLPGMQSAFIDIGLE----RAA 66

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
              V    +  + G      +K +    I++ +   Q ++VQ++K+  G KGA ++T +S
Sbjct: 67  FLHVADVWQRQESGEAPMFARKDQPLTPIEKQVFEGQSIMVQVIKDPIGTKGARLSTQIS 126

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           +AGR  V +P         +   N  D  R  L+E+    E   G G ILRT G   +  
Sbjct: 127 IAGRLLVFLPQDDHIGISQKIPQNERDALRARLQELVGTKEGGGGGGFILRTNGEESSDA 186

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E+  D  YL + W  +++ A       +++++ NL++R +RDL  ++   I +   + + 
Sbjct: 187 ELADDIRYLRKTWGRIKDAAQKLPVMSVLHQDLNLLQRVLRDLVGENTQSIRIDSREQFA 246

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
             K F +  MP+    +  Y+   PIF    I+ ++       V L S GY+I++QTEAL
Sbjct: 247 LLKSFGQEYMPAAVPKLALYKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEAL 306

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +IDVN+G        +DT  +TNLEAA  IARQLRLR+L G+++VDFIDM  +++   V
Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAHAIARQLRLRNLGGIVIVDFIDMVREEHQGEV 366

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
             + +  L +DR +   G  S  GL+EM+R+R R S+     + C  C G G +++  S+
Sbjct: 367 LSEFRRQLARDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCEACSGKGNVKTARSI 426

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              +LR +     Q+  H   V     VV   L+++   +       G  I++     +A
Sbjct: 427 CYEVLREILREARQFNPHEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMA 486

Query: 560 DKLFYI 565
            + + I
Sbjct: 487 QEQYDI 492


>gi|299530008|ref|ZP_07043435.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44]
 gi|298721988|gb|EFI62918.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44]
          Length = 495

 Score =  266 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 229/486 (47%), Gaps = 6/486 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+++   + +   E   +    G++ +     +      A      E     +A
Sbjct: 11  PQETRVAIVENGAVQELHMERPLERGLVGNIYLGKVSRVLPGMQSAFIDIGLE----RAA 66

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
              V    +  + G      +K +    I++ +   Q ++VQ++K+  G KGA ++T +S
Sbjct: 67  FLHVADVWQRQENGEAPMFARKDQPLTPIEKQVFEGQSIMVQVIKDPIGTKGARLSTQIS 126

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           +AGR  V +P         +   N  D  R  L+E+    E   G G ILRT G   +  
Sbjct: 127 IAGRLLVFLPQDDHIGISQKIPQNERDALRARLQELVGTKEGGGGGGFILRTNGEESSDA 186

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E+  D  YL + W  +++ A       +++++ NL++R +RDL  ++   I +   + + 
Sbjct: 187 ELADDIRYLRKTWARIKDAAQKLPVMSVLHQDLNLLQRVLRDLVGENTQSIRIDSREQFA 246

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
             K F +  MP+    +  Y+   PIF    I+ ++       V L S GY+I++QTEAL
Sbjct: 247 LLKSFGQEYMPAAVPKLALYKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEAL 306

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +IDVN+G        +DT  +TNLEAA  IARQLRLR+L G+++VDFIDM  +++   V
Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAHAIARQLRLRNLGGIVIVDFIDMVREEHQGEV 366

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
             + +  L +DR +   G  S  GL+EM+R+R R S+     + C  C G G +++  S+
Sbjct: 367 LSEFRRQLARDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCEACSGKGNVKTARSI 426

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              +LR +     Q+  H   V     VV   L+++   +       G  I++     +A
Sbjct: 427 CYEVLREILREARQFNPHEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMA 486

Query: 560 DKLFYI 565
            + + I
Sbjct: 487 QEQYDI 492


>gi|260767289|ref|ZP_05876229.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           furnissii CIP 102972]
 gi|260617696|gb|EEX42875.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           furnissii CIP 102972]
 gi|315181288|gb|ADT88202.1| ribonuclease G [Vibrio furnissii NCTC 11218]
          Length = 489

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/565 (20%), Positives = 207/565 (36%), Gaps = 79/565 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L++ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1   MSAELLLNVT-PSETRVAMIEGGVLQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL   +I P             + E+   Q     +++ V  G   +      
Sbjct: 60  IGLDKAAFLHASDIVPH---------TECVAETEKQQFQVRDISELVRQGQDIVVQVVKD 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  + +    S         S+V   +    E   ++                 
Sbjct: 111 PLGTKGARLTTDITLPSRYLVYMPGASHVGVSQRIESEAERERL---------------- 154

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                   +  V       G  I R        + L + A  L+
Sbjct: 155 ------------------------KNVVAHYCDEHGGFIIRTAAEAAKEQELSQDAAFLK 190

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G  +  R    +R+   +  +     R+  +     L  +      E  NL++    
Sbjct: 191 RLWGKVMERREKYKNRST--LYGELGLAQRILRDFVGTDLTKILVDSRLEYENLLEFTSE 248

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            +        +  G+K   +  D    +  S  R V      + I  ++     +     
Sbjct: 249 FVPELTDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTI----- 303

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
                                 D+N+G       +E+T   TN+EA + IARQLRLR+L 
Sbjct: 304 ----------------------DINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  +++ + V   L  +L KDR +  +   +  GL+EM+R+R R S+    
Sbjct: 342 GIIIIDFIDMLSEEHRKRVLTSLDAALNKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C+G G +++  +V   ILR +      Y A   +V+    V   L   +  ++ 
Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADQFVVYASPAVAETLQGDESHSLA 461

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + +        + F +
Sbjct: 462 ELEVFIGKEVRIQAEPLYVQEQFDV 486


>gi|320352618|ref|YP_004193957.1| RNAse E [Desulfobulbus propionicus DSM 2032]
 gi|320121120|gb|ADW16666.1| RNAse E [Desulfobulbus propionicus DSM 2032]
          Length = 750

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 179/492 (36%), Positives = 275/492 (55%), Gaps = 3/492 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS- 140
           P   R AL+++  +       +  + T  ++      S+E     A     T     +  
Sbjct: 257 PEECRIALVEDGRLESFHVTTIDREPTKNNIYKGRIVSIEANLQAAFVDIGTGRNGFLPF 316

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
                    +DV       + +   ++  I+EV++  Q +LVQ+VKE  GNKGA +TTYL
Sbjct: 317 NEIHPEYYRQDVNERCRNLIAQHQWKKLKIEEVMQKGQEVLVQVVKEVTGNKGANMTTYL 376

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SL GR  VLMP  S    ISRKI     R NL+EI    E+P G+G I+RTA A  TK  
Sbjct: 377 SLPGRCLVLMPG-SDSAGISRKIVGEERRTNLREIMSEFEIPEGIGYIIRTASAETTKAI 435

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           +++D   L+ LW+ +++      AP LVYEE + + R +RD +  +I EI+V  E+    
Sbjct: 436 LEKDLNTLLELWEEIKKRGQTMDAPALVYEEQDTVVRFLRDHFFPEIKEILVDTEESLDN 495

Query: 321 AKDFMKLL-MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
              F++ L        VR +    PIF +  IE Q++S+ + +V LPS G ++IN TEAL
Sbjct: 496 VNAFIEQLPAKQRQVKVRLHRSAKPIFNQYNIEEQIESIFKPQVPLPSGGSIVINPTEAL 555

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSGR+++    ++T    N+EAA E+ARQLRLRDL GLIVVDFIDM  KK+ R V
Sbjct: 556 VAIDVNSGRTSKNSDFDETIFLANMEAAAELARQLRLRDLGGLIVVDFIDMRNKKHIREV 615

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           E+++K S+K+D+A+V +  IS FGL+++SRQ++ + + + + + C YC+G G +RS  ++
Sbjct: 616 ERQVKMSMKRDKAKVDISKISRFGLMQISRQKMGAPIEKGSYRTCEYCQGRGTVRSVETL 675

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           AL  LR ++  + +     +      DV  YLLN+KRA + E EA+    I+++  +E+ 
Sbjct: 676 ALYYLRRIQTGITRKKVGRVECRFPLDVAQYLLNKKRAELAELEAKHRARIDIIPRVEMK 735

Query: 560 DKLFYIEKGSPV 571
                I+     
Sbjct: 736 PSEHQIDYLEAE 747


>gi|294787664|ref|ZP_06752908.1| ribonuclease G [Simonsiella muelleri ATCC 29453]
 gi|294483957|gb|EFG31640.1| ribonuclease G [Simonsiella muelleri ATCC 29453]
          Length = 498

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/407 (27%), Positives = 213/407 (52%), Gaps = 2/407 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q LLVQ++K+   +KGA ++T +SLAGR+ V +P       I
Sbjct: 90  QKQNPDETQRIEHMLFEGQTLLVQVIKDPINSKGARLSTQISLAGRFLVHLPQDEHIG-I 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPA-GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           S++I N  +R +L+E    L       G I+RT+  + T  E++ D +YL ++W+N+++ 
Sbjct: 149 SQRIENEEERDSLRERLNALLPENACHGYIIRTSAETATDHELQADIDYLTKVWENIQKQ 208

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
           A   +   L+Y++  L  R +RD++  +  +I+   +  Y +   F +L +   A  +R 
Sbjct: 209 AKTCLPESLLYQDLPLSLRMLRDMFNDNTVQILADSKLNYEKMAQFAQLYVQGAADKLRL 268

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           ++   P+F   G+E  ++   +  V L    Y+II  TEA+ +IDVN+G        ++T
Sbjct: 269 FQGERPLFETYGVESAINQALKPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGLRNFDET 328

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEA   IAR+LRLR+L G+I++DFIDM   ++  +V ++  ++L  DR RV +  
Sbjct: 329 IFKTNLEACYAIARELRLRNLGGMILIDFIDMTLPEHREAVLQEFAKALSLDRTRVTLNG 388

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            ++ GL+E++R+R R ++     + C  C+G G +++  +V   I R +     ++    
Sbjct: 389 FTSLGLVELTRKRTRENLNHVLCEFCPVCEGRGRLKTAQTVCYEIQREIVRESRRFDVKQ 448

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +     V+   L+++  ++       G  I++      + + + I
Sbjct: 449 FRIIASQPVIDLFLDEEAQSLAMLIDFIGKPISLETDRYYSQEQYDI 495


>gi|307544504|ref|YP_003896983.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581]
 gi|307216528|emb|CBV41798.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581]
          Length = 487

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/417 (29%), Positives = 218/417 (52%), Gaps = 3/417 (0%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +              Q  I ++++  Q L+VQ+ K+  G KGA +TT+LS+  RY V MP
Sbjct: 68  IHAHEVMPPGTPADEQVSISQLLQEGQSLVVQVTKDPIGTKGARLTTHLSVPSRYLVYMP 127

Query: 212 NTSKGETISRKITNPVDRKNLKEI---ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           ++       R   +    +   ++        +  G G I+RTA    T  E+  D  +L
Sbjct: 128 DSPHNGVSQRIEDDGERERLRAQVGAALSEQTLEVGGGFIVRTAAEGVTDEELAGDMHFL 187

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           +RLW  V E  + + AP ++Y++  L  R +RD+   DI ++ +   + + +  +F +  
Sbjct: 188 LRLWRKVSERRVTASAPSVIYDDLPLFMRTLRDVMRDDIEKVRIDSRENHVKLLEFAEEF 247

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           MP     +  Y    PIF    +E ++      +V L S GY++I+ TEA+ +IDVN+G 
Sbjct: 248 MPDAVERIEHYAGERPIFDLYSVEDEIQKALARKVQLKSGGYLVIDPTEAMTTIDVNTGG 307

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
                 +E+T  +TNLEAA  IARQLRLR+L G+I++DFIDME+ ++ R V + L+++L+
Sbjct: 308 YVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDTEHQRQVLRVLEKALE 367

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
           +D A+ +   ++  GL++++R+R R S+ ++  + C  C+G G +++  SV   I R + 
Sbjct: 368 RDHAKTKCTGVTELGLVQLTRKRTRESLEQTLCEPCPACEGRGTLKTPESVCYEIFREIL 427

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                Y+A    V     VV  LL+++ A + + E   G +I   +    + + + I
Sbjct: 428 REERAYSAETYTVLAAQSVVDRLLDEESAAVADLEEFIGKTIRFQVESHYSQEQYDI 484



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV V+ +  ++E   E   ++ I GNIY  +V RV P +QAAFVD
Sbjct: 1  MSGEVLINLT-PMETRVAVVENGVLQEAFIERARRRGIVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G +R  F+   E+ P
Sbjct: 60 IGLDRAAFIHAHEVMP 75


>gi|237747746|ref|ZP_04578226.1| RNase G [Oxalobacter formigenes OXCC13]
 gi|229379108|gb|EEO29199.1| RNase G [Oxalobacter formigenes OXCC13]
          Length = 487

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/414 (26%), Positives = 206/414 (49%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                         +   I++++ + Q ++V+++K+  G KGA ++T +S+AGR  V +P
Sbjct: 71  DDIFEAHQDKTSADKPVPIEKMLTDGQSIMVRVIKDPIGTKGARLSTQISIAGRMLVYLP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    R +           + + +      G I+RT     +  ++K D  +L ++
Sbjct: 131 EEPHIGISQRILDEKERESLKSRLQQLMAPDEKGGYIIRTMAEDASDSDLKTDASFLEKI 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++E A  +  P L+Y++ NL +R +RD   +  + I+V  E+ + + ++F K+  P 
Sbjct: 191 WKTLKEKAYVTPPPALLYQDLNLAERVLRDFVHEKTNRILVDSEEEFLKLQEFAKIYTPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               +  +E   P+F    +E ++       V L S GY+I++QTEA+ +IDVN+G    
Sbjct: 251 ILDRLACHEGDRPLFDLYNVEEEIQLALSRRVNLKSGGYLIVDQTEAMTTIDVNTGGFVN 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
               +DT  +TNLEAA  IARQLRLR+L G+I++DFIDM   ++  +V  +L+++L  D+
Sbjct: 311 GRTFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMVNPEHRNAVMDELRKTLAHDK 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            +V V   S  GL+EM+R+R R S+     + C  C+G G I++  ++   I+R +    
Sbjct: 371 TKVSVSDFSVLGLVEMTRKRTRESLSHILCEPCPVCQGRGEIKTPQTICYEIMRDIMREA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Q++     +     VV   L ++   +          +++ +    A   + +
Sbjct: 431 KQFSPKEFRILASQIVVDLFLEEESQHLAALGDMIEKPVSLQVEPTYAQWQYEV 484



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ +  +ETR+ ++ +   +EL  E    + + GNIYL +V RV P +Q+AF+D
Sbjct: 1  MKEDILINIT-PQETRIAIVSEGTTQELHIERSLTRGLAGNIYLGRVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHIDDI 73


>gi|145300792|ref|YP_001143633.1| ribonuclease G [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853564|gb|ABO91885.1| ribonuclease G [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 489

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 210/413 (50%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAVKEKEQFQAGNIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           ++      R  +     +  + +A  ++     G I+RTA     + E+++D  +L RLW
Sbjct: 136 SAHVGVSQRIESEAERERLKRTVAGYVDDL--GGYIIRTAAEGVGEQELEQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E         ++YE+ +L  R +RD    ++ +I V   + + + K F +  +P  
Sbjct: 194 RKILERKHKYPPCKILYEDPSLAFRVVRDFVGAELDKIRVDSRQSFDQLKRFTEEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 AGKLEYYPGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA   IAR LRLR+L G+I++DFIDM+ + + R V   L+++L KDRA
Sbjct: 314 RNLEETIFNTNVEATAAIARHLRLRNLGGIIIIDFIDMQSEDHRRRVLHSLEQALAKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  CKG G +++  SV   ILR +     
Sbjct: 374 KTNVNGFSQLGLVEMTRKRTRESLEHVLCSECPECKGRGRVKTVESVCFEILREIIRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A    V+    V+ YL  ++  ++ E E   G  + VV       + F +
Sbjct: 434 AYDADQFTVYAAPAVIDYLRGEESHSLAELEVFIGKQVRVVSEPLCGQEQFDV 486


>gi|262281201|ref|ZP_06058983.1| ribonuclease G [Acinetobacter calcoaceticus RUH2202]
 gi|262257432|gb|EEY76168.1| ribonuclease G [Acinetobacter calcoaceticus RUH2202]
          Length = 488

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/412 (29%), Positives = 215/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   Q L VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 75  NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ I   ++        VI+RTA     + EI RD  YL +LW+ 
Sbjct: 135 GVSQRIESEEERDR-LRNIIESIQSEHNLPGSVIVRTAAEGVDEAEIARDMCYLSKLWEY 193

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  ++ ++I V   + + +  +F++  +P+   
Sbjct: 194 IQRKQIDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHAKLLEFVEEFVPNMQS 253

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G++++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGILIIDFIDMQEATHREEVMRQFEKMLERDHAKT 373

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 5  MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 64 IGLSRTAFLHINDM 77


>gi|59710983|ref|YP_203759.1| ribonuclease G [Vibrio fischeri ES114]
 gi|197336147|ref|YP_002155133.1| ribonuclease G [Vibrio fischeri MJ11]
 gi|59479084|gb|AAW84871.1| ribonuclease G [Vibrio fischeri ES114]
 gi|197317637|gb|ACH67084.1| ribonuclease G [Vibrio fischeri MJ11]
          Length = 489

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I +++   Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVSENEKRQFQVRDISQLVHQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA    ++ EI +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEKERNR-LKDTVSDYCDEFG-GFIIRTAAEGASEAEISQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    ++Y E  L +R +RD    ++  I V  +  + + K+F    +P  
Sbjct: 194 HKVIERRKKNKTKSMLYGELGLDQRILRDFVGTELDLIRVDSKLAFEKLKEFTTEFVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            + +  Y    PIF     E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TKKLEYYSGDKPIFDMYETENEIQRALDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V + L  +L+KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMLSEEHRRRVLQSLGSALEKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCGQCPTCEGRGAVKTVESVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 434 AYDSDKFVVYASVAVADALEGEESHALAELELFIGKQVKIQAEPLYIQEQFDV 486


>gi|115352390|ref|YP_774229.1| ribonuclease [Burkholderia ambifaria AMMD]
 gi|115282378|gb|ABI87895.1| RNAse G [Burkholderia ambifaria AMMD]
          Length = 489

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 201/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSEELAGDVTYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D + I V   + Y+   +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQRLAEFADEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|37681114|ref|NP_935723.1| ribonuclease G [Vibrio vulnificus YJ016]
 gi|37199864|dbj|BAC95694.1| ribonuclease G and E [Vibrio vulnificus YJ016]
          Length = 491

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 78  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 137

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA       E+ +D  +L RLW
Sbjct: 138 ASHVGVSQRIESESERERLKK--IVSHYCDEHGGFIIRTAAEGADGKELSQDAAFLKRLW 195

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I+V   + +   K+F    +P  
Sbjct: 196 LKVMERRSKYKTRSTLYGELGLAQRILRDFVGTELDKILVDSRQEFENLKEFTSEYVPEL 255

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 256 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 315

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V   L+ +L KDR 
Sbjct: 316 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSSEEHRKRVLTSLENALSKDRV 375

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 376 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 435

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +   + E E   G  + +        + F +
Sbjct: 436 AYDADKFVVYASPAVADALHGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 488


>gi|27364838|ref|NP_760366.1| ribonuclease G [Vibrio vulnificus CMCP6]
 gi|320155228|ref|YP_004187607.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           vulnificus MO6-24/O]
 gi|27360983|gb|AAO09893.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           vulnificus CMCP6]
 gi|319930540|gb|ADV85404.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           vulnificus MO6-24/O]
          Length = 489

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESESERERLKK--IVSHYCDEHGGFIIRTAAEGADGKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I+V   + +   K+F    +P  
Sbjct: 194 LKVMERRSKYKTRSTLYGELGLAQRILRDFVGTELDKILVDSRQEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSSEEHRKRVLTSLENALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVADALHGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|170699949|ref|ZP_02890977.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
 gi|171320920|ref|ZP_02909915.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
 gi|172061261|ref|YP_001808913.1| ribonuclease [Burkholderia ambifaria MC40-6]
 gi|170135154|gb|EDT03454.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
 gi|171093812|gb|EDT38948.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
 gi|171993778|gb|ACB64697.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MC40-6]
          Length = 489

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 201/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSEELAGDVTYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D + I V   + Y+   +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQRLAEFADEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|107023239|ref|YP_621566.1| ribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116690322|ref|YP_835945.1| ribonuclease [Burkholderia cenocepacia HI2424]
 gi|170733660|ref|YP_001765607.1| ribonuclease [Burkholderia cenocepacia MC0-3]
 gi|105893428|gb|ABF76593.1| RNAse G [Burkholderia cenocepacia AU 1054]
 gi|116648411|gb|ABK09052.1| RNAse G [Burkholderia cenocepacia HI2424]
 gi|169816902|gb|ACA91485.1| ribonuclease, Rne/Rng family [Burkholderia cenocepacia MC0-3]
          Length = 489

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 201/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D + I V   + Y+   +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLSEFAGEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|302879872|ref|YP_003848436.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2]
 gi|302582661|gb|ADL56672.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2]
          Length = 484

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 118/410 (28%), Positives = 203/410 (49%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
              +          I++++   Q LLVQ++KE  G+KGA +TT LS AGR  V +P   +
Sbjct: 72  DIWENSNSGIEAKPIEKILFEGQNLLVQVIKEPIGSKGARLTTQLSFAGRLLVFLPQEMR 131

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R            ++   L      G I+RT   ++       D  YL +LW N+
Sbjct: 132 IGVSQRIEGTEQRDALRAKLQAILPPDHHGGYIIRTVAEAKDDAHFAIDIAYLDKLWSNL 191

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  A  + AP L+Y+E ++  R +RD   ++ + I++       +  +F        A++
Sbjct: 192 QTAAKTASAPQLLYQELDISLRVLRDFVSEETARILIDSRSTRNKMLEFADNYNADAAQL 251

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F    IE +++      V L S GY+II+QTEAL ++DVN+G        
Sbjct: 252 LEHYTGARPLFDMYNIEEEIERALSKRVDLKSGGYLIIDQTEALTTVDVNTGGFVGVRNF 311

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEA + IARQLRLR+L G+I+ DFIDM+  ++  +V ++ K++L +D  R+ 
Sbjct: 312 DDTIFKTNLEATQVIARQLRLRNLGGIIICDFIDMDNLQHRDAVLEEFKKALARDHTRIS 371

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   S+ GL+EM+R+R R S+     + C  CKG G +++  +V   ILR +     Q+ 
Sbjct: 372 VNNFSSLGLVEMTRKRTRESLAHVLCEPCPTCKGRGEVKTAQTVCYEILREIVREARQFD 431

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A    +     V+   L ++   +          I++++  +   + + +
Sbjct: 432 AREYRILASQQVIDLFLEEESQALAGLSDFIEKPISMLVENQYNQEQYDV 481



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +  +ETRV V++   V+EL  E    + I GN+YL ++ RV P +Q+AF+D
Sbjct: 1  MSEEILINVT-PQETRVAVMQLGVVQELHIERGSNRGIAGNVYLGRIKRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERSAFLHVADI 73


>gi|53725450|ref|YP_103487.1| ribonuclease G [Burkholderia mallei ATCC 23344]
 gi|67640608|ref|ZP_00439408.1| ribonuclease, Rne/Rng family [Burkholderia mallei GB8 horse 4]
 gi|121598898|ref|YP_992408.1| ribonuclease G [Burkholderia mallei SAVP1]
 gi|124383360|ref|YP_001026789.1| ribonuclease G [Burkholderia mallei NCTC 10229]
 gi|126449959|ref|YP_001079926.1| ribonuclease [Burkholderia mallei NCTC 10247]
 gi|167000918|ref|ZP_02266719.1| ribonuclease, Rne/Rng family [Burkholderia mallei PRL-20]
 gi|254175767|ref|ZP_04882427.1| ribonuclease, Rne/Rng family [Burkholderia mallei ATCC 10399]
 gi|254202169|ref|ZP_04908532.1| ribonuclease, Rne/Rng family [Burkholderia mallei FMH]
 gi|254207496|ref|ZP_04913846.1| ribonuclease, Rne/Rng family [Burkholderia mallei JHU]
 gi|254359914|ref|ZP_04976184.1| ribonuclease, Rne/Rng family [Burkholderia mallei 2002721280]
 gi|52428873|gb|AAU49466.1| ribonuclease G [Burkholderia mallei ATCC 23344]
 gi|121227708|gb|ABM50226.1| ribonuclease G [Burkholderia mallei SAVP1]
 gi|124291380|gb|ABN00649.1| ribonuclease G [Burkholderia mallei NCTC 10229]
 gi|126242829|gb|ABO05922.1| ribonuclease, Rne/Rng family [Burkholderia mallei NCTC 10247]
 gi|147746416|gb|EDK53493.1| ribonuclease, Rne/Rng family [Burkholderia mallei FMH]
 gi|147751390|gb|EDK58457.1| ribonuclease, Rne/Rng family [Burkholderia mallei JHU]
 gi|148029154|gb|EDK87059.1| ribonuclease, Rne/Rng family [Burkholderia mallei 2002721280]
 gi|160696811|gb|EDP86781.1| ribonuclease, Rne/Rng family [Burkholderia mallei ATCC 10399]
 gi|238521361|gb|EEP84813.1| ribonuclease, Rne/Rng family [Burkholderia mallei GB8 horse 4]
 gi|243063221|gb|EES45407.1| ribonuclease, Rne/Rng family [Burkholderia mallei PRL-20]
          Length = 488

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 116/399 (29%), Positives = 197/399 (49%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +  
Sbjct: 87  HQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEA 146

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                   +   +      G I+RT     T  E+  D  YL + W  +           
Sbjct: 147 EREAVRARLTAVIPSDEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTS 206

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++ +L +R +RD    D + I V   + ++   +F     P+ +  +  Y    P+F
Sbjct: 207 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVEFAAEFTPAVSPKLHHYTGKRPLF 266

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEA
Sbjct: 267 DLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 326

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+E
Sbjct: 327 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVE 386

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C  C+G G +++  +V   ILR +     Q+      V     
Sbjct: 387 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQ 446

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 447 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GN+YL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|78067097|ref|YP_369866.1| ribonuclease G [Burkholderia sp. 383]
 gi|77967842|gb|ABB09222.1| RNAse G [Burkholderia sp. 383]
          Length = 489

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 201/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPADEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D + I V   + Y+   +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLSEFAGEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|293610977|ref|ZP_06693276.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826629|gb|EFF84995.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123293|gb|ADY82816.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter calcoaceticus PHEA-2]
          Length = 469

 Score =  264 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 123/412 (29%), Positives = 214/412 (51%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   Q L VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 56  NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 115

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ I  G++        VI+RTA     + EI +D  YL +LW+ 
Sbjct: 116 GVSQRIESEEERDR-LRNIIEGIQSEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 174

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++    +   P L++EE  L +R IRDL  ++ ++I V   + + +  +F+   +P+   
Sbjct: 175 IQRKQTDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHAKLLEFVDEFVPNMKS 234

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 235 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 294

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G++++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 295 LEDTVFKTNMEATQVIARQLRLRNLGGILIIDFIDMQEATHREEVMRQFEKMLERDHAKT 354

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 355 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 414

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 415 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 466



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          + ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD G +R  FL   ++
Sbjct: 1  MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDM 58


>gi|153833993|ref|ZP_01986660.1| ribonuclease G [Vibrio harveyi HY01]
 gi|148869637|gb|EDL68623.1| ribonuclease G [Vibrio harveyi HY01]
          Length = 489

 Score =  264 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 202/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNHYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I+V     Y   K+F    +P  
Sbjct: 194 QKVMERRAKYKTRSTLYGELGLAQRILRDFVGTELDKIMVDSRLEYENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMLSDEHRKRVLTSLETALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A N +V+    V   LL  +   + E E   G  + +        + F +
Sbjct: 434 AYDADNFVVYASPYVAETLLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|254247612|ref|ZP_04940933.1| Ribonucleases G and E [Burkholderia cenocepacia PC184]
 gi|124872388|gb|EAY64104.1| Ribonucleases G and E [Burkholderia cenocepacia PC184]
          Length = 489

 Score =  264 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 201/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D + I V   + Y+   +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLSEFAGEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENVEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|125972682|ref|YP_001036592.1| ribonuclease G [Clostridium thermocellum ATCC 27405]
 gi|125712907|gb|ABN51399.1| RNAse G [Clostridium thermocellum ATCC 27405]
          Length = 497

 Score =  264 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 239/563 (42%), Gaps = 79/563 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D     E RV +L D  + EL  E    +++ GNIY  +V  V P +QAAF+D
Sbjct: 1   MVSEIVVDVGI-NEKRVALLEDRELVELFIERNDCERLVGNIYRGRVESVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++ FL   +       IP                D E +  DV   ++        
Sbjct: 60  IGYEKNAFLYVGD------AIPQ----------KEFSEDDEEIYSDVKSYNIEEILRPGQ 103

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E    +      T+                                +      +  RQ++
Sbjct: 104 EITVQVTKEPIGTKGP------------------------------RVTTHITLPGRQMV 133

Query: 181 LVQIVKEERGNKGAA-VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           L+        ++          L      + P       I R ++     ++ K     L
Sbjct: 134 LLPNADYIGISRRIEDEEERAKLRKIAEKIKP--KNMGIIVRTVSEGKREEDFKSDLNFL 191

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                                        ++LW  +++   +   P  ++++ ++I RA+
Sbjct: 192 -----------------------------VKLWAKIKQREQSGPVPRCLHKDLSVIYRAV 222

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD++  +I   +++  + Y +  + ++++ P+    V  +     +F    I+  +    
Sbjct: 223 RDIFTWNIDRFVINDRQEYNKVLELVEMISPALKMRVEYFNKNIDLFEYYQIDSMIQKAL 282

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             +V L   GY++I +TEAL  IDVN+G+    + +EDT L+TNL+A +EI +QLRLRD+
Sbjct: 283 AKKVWLKCGGYIVIERTEALTVIDVNTGKYVGVNNLEDTVLRTNLDAVKEIGKQLRLRDI 342

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDM + ++ + V + LK+ LKKDR +  V  ++  GL+EM+R+++R  +   
Sbjct: 343 GGIIIIDFIDMHDPEHQKQVLEALKQVLKKDRTKTTVVGMTGLGLIEMTRKKVREGLESM 402

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C YC+G G I S  SVA ++ + + +Y  +  A+ I+V  H  V   L  +    +
Sbjct: 403 MLQDCPYCEGRGKILSPESVARNVEKEISKYFTKTIANAIMVEVHPTVAEVLRGEDNDNL 462

Query: 540 VEYEARFGVSINVVIGIELADKL 562
              +  F   + +    E+  + 
Sbjct: 463 ARIQNLFNKKVIIKPSAEVGHEE 485


>gi|325524247|gb|EGD02371.1| ribonuclease G [Burkholderia sp. TJI49]
          Length = 489

 Score =  264 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 199/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P        I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPPSAAAHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVAYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D + I V   + Y+   DF     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLADFAAEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|206560754|ref|YP_002231519.1| ribonuclease G [Burkholderia cenocepacia J2315]
 gi|198036796|emb|CAR52696.1| ribonuclease G [Burkholderia cenocepacia J2315]
          Length = 489

 Score =  264 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 200/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D + I V   + Y    +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYTRLAEFAGEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|156975915|ref|YP_001446822.1| ribonuclease G [Vibrio harveyi ATCC BAA-1116]
 gi|156527509|gb|ABU72595.1| hypothetical protein VIBHAR_03681 [Vibrio harveyi ATCC BAA-1116]
          Length = 489

 Score =  264 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 202/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNHYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I+V     Y   K+F    +P  
Sbjct: 194 QKVMERRAKYKTRSTLYGELGLAQRILRDFVGTELDKIMVDSRLEYENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMLSDEHRKRVLTSLEAALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A N +V+    V   LL  +   + E E   G  + +        + F +
Sbjct: 434 AYDADNFVVYASPYVAETLLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|260773638|ref|ZP_05882554.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           metschnikovii CIP 69.14]
 gi|260612777|gb|EEX37980.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           metschnikovii CIP 69.14]
          Length = 489

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 118/413 (28%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFKVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVYMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
                   R        +N  +   G       G I+RTA     + E+ +D  +L RLW
Sbjct: 136 AIHVGVSQRI--ESERERNRLKSVVGQYCDEHGGFIIRTAAEGANEKELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E          +Y E  L +R +RD    ++++I+V     +    +F    +P  
Sbjct: 194 TKIMERRAKYKTRTTLYGELGLAQRILRDFVGTELTKILVDSRTEFDNLLEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLSLYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM    + + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMISDDHRKRVLVSLEAALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +  ++ E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVADTLQGDESHSLAELEVFIGKQVRIQAEPLYVQEQFDV 486


>gi|53718794|ref|YP_107780.1| ribonuclease G [Burkholderia pseudomallei K96243]
 gi|76811448|ref|YP_332787.1| ribonuclease G [Burkholderia pseudomallei 1710b]
 gi|126440628|ref|YP_001058273.1| ribonuclease [Burkholderia pseudomallei 668]
 gi|126451783|ref|YP_001065512.1| ribonuclease [Burkholderia pseudomallei 1106a]
 gi|134281107|ref|ZP_01767816.1| TerL protein [Burkholderia pseudomallei 305]
 gi|167718773|ref|ZP_02402009.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei
           DM98]
 gi|167737785|ref|ZP_02410559.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 14]
 gi|167814968|ref|ZP_02446648.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 91]
 gi|167823383|ref|ZP_02454854.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 9]
 gi|167844933|ref|ZP_02470441.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei
           B7210]
 gi|167893476|ref|ZP_02480878.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei
           7894]
 gi|167901929|ref|ZP_02489134.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167910162|ref|ZP_02497253.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei
           112]
 gi|167918194|ref|ZP_02505285.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei
           BCC215]
 gi|217419451|ref|ZP_03450957.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 576]
 gi|226195309|ref|ZP_03790898.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pakistan 9]
 gi|237811520|ref|YP_002895971.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei MSHR346]
 gi|242317134|ref|ZP_04816150.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1106b]
 gi|254181244|ref|ZP_04887841.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1655]
 gi|254190607|ref|ZP_04897114.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195163|ref|ZP_04901592.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei S13]
 gi|254258934|ref|ZP_04949988.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1710a]
 gi|254298476|ref|ZP_04965928.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 406e]
 gi|52209208|emb|CAH35153.1| ribonuclease G [Burkholderia pseudomallei K96243]
 gi|76580901|gb|ABA50376.1| ribonuclease G [Burkholderia pseudomallei 1710b]
 gi|126220121|gb|ABN83627.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 668]
 gi|126225425|gb|ABN88965.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1106a]
 gi|134247413|gb|EBA47498.1| TerL protein [Burkholderia pseudomallei 305]
 gi|157808115|gb|EDO85285.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 406e]
 gi|157938282|gb|EDO93952.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pasteur
           52237]
 gi|169651911|gb|EDS84604.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei S13]
 gi|184211782|gb|EDU08825.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1655]
 gi|217396755|gb|EEC36771.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 576]
 gi|225932511|gb|EEH28509.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pakistan 9]
 gi|237502901|gb|ACQ95219.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei MSHR346]
 gi|242140373|gb|EES26775.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1106b]
 gi|254217623|gb|EET07007.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1710a]
          Length = 488

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 116/399 (29%), Positives = 197/399 (49%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +  
Sbjct: 87  HQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEA 146

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                   +   +      G I+RT     T  E+  D  YL + W  +           
Sbjct: 147 EREAVRARLTAVIPSDEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTS 206

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++ +L +R +RD    D + I V   + ++   +F     P+ +  +  Y    P+F
Sbjct: 207 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVEFAAEFTPAVSPKLHHYTGERPLF 266

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEA
Sbjct: 267 DLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 326

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+E
Sbjct: 327 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVE 386

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C  C+G G +++  +V   ILR +     Q+      V     
Sbjct: 387 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQ 446

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 447 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GN+YL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|237807033|ref|YP_002891473.1| ribonuclease G [Tolumonas auensis DSM 9187]
 gi|237499294|gb|ACQ91887.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187]
          Length = 489

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 206/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                +   K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVDVKEKEHFQAGNIAELVRQGQDIMVQVVKDPMGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           ++      R   +  + +   +      V    G I+RTA     + E+++D  +L RLW
Sbjct: 136 SAHVGVSQRI--DSEEERERLKEIVSRNVDELGGFIIRTAAEGIGEKELEQDTIFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        H++Y E +L  R +RD    D+ +I V   + Y +   F +  +P  
Sbjct: 194 RKVLERRQKYPTSHVLYAEWSLAFRILRDFVGDDLDKIRVDSRQTYEQLSHFTEEFVPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 IGKLDYYSGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA   IARQLRLR+L G+I++DFIDM+ + + R V + L+++L KDRA
Sbjct: 314 RNLEETIFNTNIEATAAIARQLRLRNLGGIIIIDFIDMQSEDHRRRVLQSLEQALAKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  CKG G +++  SV   ILR +     
Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESLEHVLCSECPACKGRGRVKTVESVCYEILREILRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++  ++ E E      + V        + + +
Sbjct: 434 AYDADQFVVYASPAVAEALRGEESHSLAELEVFISKQVKVQAEPLYNQEQYDV 486


>gi|296134025|ref|YP_003641272.1| ribonuclease, Rne/Rng family [Thermincola sp. JR]
 gi|296032603|gb|ADG83371.1| ribonuclease, Rne/Rng family [Thermincola potens JR]
          Length = 564

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 132/434 (30%), Positives = 224/434 (51%), Gaps = 3/434 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
              K      I +V+K  Q +LVQI KE  G KGA VTT+++L GRY VLMP        
Sbjct: 82  EEAKSNYHVNITDVLKEGQEILVQIAKEPIGTKGARVTTHITLPGRYLVLMPTVDYIGIS 141

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R        +   +       PA MG+I+RT      + E+ +D   L +LW  ++  +
Sbjct: 142 RRIENESERER--LKALAEKVKPANMGLIVRTIAEGMDEEELVQDVTVLTKLWKKIQNRS 199

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
            +   P+L++++  L++R +RD++ +DI  +I+     Y +  + M+L  P     V  Y
Sbjct: 200 CHGPVPNLIHKDLELVQRILRDIFTEDIDNLIIDSRYEYEKVLELMELTTPQLKSRVSLY 259

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           E    +F + G++ +++ + +  V L   GY++I+QTEAL +IDVN+G+      + DT 
Sbjct: 260 EQD-NLFEKFGVDEEIEKILKPRVWLKCGGYIVIDQTEALTAIDVNTGKYVGSTNLADTV 318

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNL+AA EIARQLRLR++ G+I+VDFIDM ++++ R V +KL+E ++KD+ +  V  +
Sbjct: 319 LKTNLDAAVEIARQLRLRNIGGIIIVDFIDMPDQEHQRMVLQKLEEEVRKDKTKTNVLGL 378

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           +  GL+EM+R+++R  +     K C YC G G + S+ ++++     + +     +A  I
Sbjct: 379 TQLGLVEMTRKKVRQGLENVLLKPCPYCDGRGKVLSEETISIRAKNEIFKLAQHTSAEAI 438

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           +V  H  V   L+      + E EA+   SI +        ++  I        +   G 
Sbjct: 439 LVEVHPSVASLLIGSGGTQLRELEAKTKKSILIRGCEHYHQEVINIRALYSQSEIEAIGV 498

Query: 580 KVGSDSQAPSYDKN 593
            V          + 
Sbjct: 499 PVRPGQILEVRIEE 512



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++    EETRV VL D  V E+  E    +++ GNIY  KV  V P +QAAFVD
Sbjct: 1  MLKEILVNVRE-EETRVAVLEDKVVVEIYIERSLNQRLVGNIYKGKVENVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  ++ FL   +  P
Sbjct: 60 IGLEKNAFLFVEDAVP 75


>gi|116749264|ref|YP_845951.1| ribonuclease [Syntrophobacter fumaroxidans MPOB]
 gi|116698328|gb|ABK17516.1| RNAse E [Syntrophobacter fumaroxidans MPOB]
          Length = 495

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 174/424 (41%), Positives = 265/424 (62%), Gaps = 2/424 (0%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
              PE   +    +  IQ+VI + Q +LVQ+VKEE G+KGA +TTY+SLAGR  VLMP  
Sbjct: 73  EIHPEYYEEDSDERVRIQDVIHSGQEVLVQVVKEELGSKGALLTTYISLAGRDVVLMPGQ 132

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S+   +SRKI +   R+ LKE+A  L+VP   GVILRTA   RTK E+ +DF +LM++W+
Sbjct: 133 SQRG-VSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRTKREVTKDFNHLMKIWE 191

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +R+    + AP L+Y+E +L  R IRD +  +I  I+V   +  ++ KDF++++ P + 
Sbjct: 192 EIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREVLKQVKDFIRIISPRHD 251

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR-STRE 392
           R+VR Y++  PI  +  +E Q+  + + +V L S G+++I+ TEALV++DVNSGR ++ E
Sbjct: 252 RVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTEALVAVDVNSGRTNSGE 311

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+   + N+EAA EI RQLRLRDL GLIV+DFIDM + ++ R VE++LKE +KKD+A
Sbjct: 312 GALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHTREVERRLKEEIKKDKA 371

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           ++ VG IS FGLLE+SRQ +  +++  + K C  C+GAG +RS  + AL  LR +   L 
Sbjct: 372 KITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSAETTALCYLRKIWLTLS 431

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           Q    ++      +V  YLLN+KR  +   E R+G +I +     +     ++E  +   
Sbjct: 432 QKKPASVRATFAPEVAHYLLNRKRQELTRLEERYGTNIQIESLATMLPHDGHLEFTARET 491

Query: 573 ALVN 576
               
Sbjct: 492 QEKP 495



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 54/79 (68%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+  M+I+A H EE RV ++    +E    E+  + ++ GNIY   VT V+PSLQAAFV+
Sbjct: 1  MSQTMIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVN 60

Query: 61 YGGNRHGFLPFLEIHPDYY 79
          YG  R+GFLPF EIHP+YY
Sbjct: 61 YGMERNGFLPFPEIHPEYY 79


>gi|167569362|ref|ZP_02362236.1| ribonuclease, Rne/Rng family protein [Burkholderia oklahomensis
           C6786]
          Length = 487

 Score =  263 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 119/399 (29%), Positives = 199/399 (49%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           Q  I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +  
Sbjct: 86  QQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESET 145

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                   +   +      G I+RT     T  E+  D  YL + W  +        A  
Sbjct: 146 EREAVRARLTAVIPADEKGGYIVRTIAEDATGDELAADVAYLRKTWATIVAQGQRLPATS 205

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++ +L +R +RD    D + I V   + Y+   DF     P+ +  +  Y    P+F
Sbjct: 206 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLVDFAGEFTPAVSPKLHHYTGERPLF 265

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEA
Sbjct: 266 DLYSIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 325

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+E
Sbjct: 326 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNGFSQLGLVE 385

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C  C+G G +++  +V   +LR +     Q+      V     
Sbjct: 386 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDVLREILRESRQFNPREFRVIASQQ 445

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 446 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 484



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|167580361|ref|ZP_02373235.1| ribonuclease, Rne/Rng family protein [Burkholderia thailandensis
           TXDOH]
          Length = 488

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 197/399 (49%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +  
Sbjct: 87  HQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEA 146

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                   +   +      G I+RT     T  E+  D  YL + W  +           
Sbjct: 147 EREAVRARLTAVIPADEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTS 206

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++ +L +R +RD    D + I V   + ++   DF     P+ +  +  Y    P+F
Sbjct: 207 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLF 266

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEA
Sbjct: 267 DLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 326

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+E
Sbjct: 327 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVE 386

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C  C+G G +++  +V   ILR +     Q+      V     
Sbjct: 387 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQ 446

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 447 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|167562111|ref|ZP_02355027.1| ribonuclease, Rne/Rng family protein [Burkholderia oklahomensis
           EO147]
          Length = 487

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 119/399 (29%), Positives = 199/399 (49%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           Q  I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +  
Sbjct: 86  QQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESET 145

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                   +   +      G I+RT     T  E+  D  YL + W  +        A  
Sbjct: 146 EREAVRARLTAVIPADEKGGYIVRTIAEDATGDELAADVAYLRKTWATIVAQGQRLPATS 205

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++ +L +R +RD    D + I V   + Y+   DF     P+ +  +  Y    P+F
Sbjct: 206 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLVDFAGEFTPAVSPKLHHYTGERPLF 265

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEA
Sbjct: 266 DLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 325

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+E
Sbjct: 326 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNGFSQLGLVE 385

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C  C+G G +++  +V   +LR +     Q+      V     
Sbjct: 386 MTRKRTRESLAHVLCEPCPTCQGKGQVKTPRTVCYDVLREILRESRQFNPREFRVIASQQ 445

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 446 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 484



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|167585909|ref|ZP_02378297.1| ribonuclease, Rne/Rng family protein [Burkholderia ubonensis Bu]
          Length = 489

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 199/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P        I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPHTSAPHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     T  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVIPADEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVGQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD    D S I V   + Y+   +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTSRIQVDSRETYQRLAEFATEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALARDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486


>gi|121609576|ref|YP_997383.1| ribonuclease [Verminephrobacter eiseniae EF01-2]
 gi|121554216|gb|ABM58365.1| RNAse G [Verminephrobacter eiseniae EF01-2]
          Length = 495

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 126/406 (31%), Positives = 208/406 (51%), Gaps = 2/406 (0%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
           +K + Q  I++ + + Q L+VQ++KE  G KGA ++T +S+AGR  V  P         +
Sbjct: 87  RKGQPQVPIEKQVFDGQALMVQVIKEPIGTKGARLSTQISIAGRLLVFQPQDDHVGVSQK 146

Query: 222 KI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
                    R  L+ +        G G ILRT G   +  E+  D  YL + W  ++E A
Sbjct: 147 IPGAERDALRARLQALVGDKTTGGGGGFILRTNGEDSSDAELAEDIAYLRKTWALIKEAA 206

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
           L   A  L++++  L++R +RDL  +    I +   + ++    F +  MP+ A  ++ Y
Sbjct: 207 LKLPARSLLHQDLFLLQRVLRDLVGEQTQSIRIDSLEQFQRLHAFGQEFMPAAAGKLQHY 266

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   PIF    I+ ++       V L S GY+I++QTEAL +IDVN+G        +DT 
Sbjct: 267 KGERPIFDLYAIDEEVAKALGRRVDLKSGGYLIVDQTEALTTIDVNTGGFVGVRNFDDTI 326

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA+ IARQLRLR+L G+I+VDFIDM +  +  +V  + ++ L +DR +   G  
Sbjct: 327 FKTNLEAAQAIARQLRLRNLGGIIIVDFIDMAQGGHQEAVLTEFRKQLARDRVKTMAGGF 386

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  SV   ILR +     Q+     
Sbjct: 387 SQLGLVEMTRKRTRESLAHMLCEPCAACQGKGSVKTARSVCYDILREILREARQFNPREF 446

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V   + V+  LL+++   +       G  I++     +  + + I
Sbjct: 447 RVVASARVIEQLLDEESQHLAGLIDFIGKPISLQAESAMGQEQYDI 492



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV V+    V+EL  E   ++ + GNIYL KV RV P +Q+AF+D
Sbjct: 1  MQQDILINWS-PQETRVAVVEHGAVQELHIERTLERGLVGNIYLGKVARVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI---HPD 77
           G  R  FL   ++    PD
Sbjct: 60 IGLERAAFLHVADLWQRQPD 79


>gi|297537833|ref|YP_003673602.1| Rne/Rng family ribonuclease [Methylotenera sp. 301]
 gi|297257180|gb|ADI29025.1| ribonuclease, Rne/Rng family [Methylotenera sp. 301]
          Length = 483

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/407 (29%), Positives = 207/407 (50%)

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
               +   Q  IQ V+   Q ++VQ++KE  G KGA +TT +S+AGR+ V +P       
Sbjct: 74  FECGQSDSQLPIQAVLHEGQSIMVQVIKEPIGTKGARLTTQISIAGRFLVYLPQQDHIGV 133

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
             R        +    +   L      G I+RT   + T  E+  D +YL + W ++   
Sbjct: 134 SQRIENEAEREQLRARLVGLLPEDRVGGYIIRTMSETATDAELLADVDYLTKTWAHISAK 193

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
              +    LV+++ NL  R +RD+ C D   + +   + Y++  +F  L   +    +  
Sbjct: 194 HKTASDRSLVFQDLNLPMRVLRDVICADTQAVRIDSSETYQKLVEFANLYAITALDKLVH 253

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y    P+F    IE +++     +V L S GY+I +QTEAL ++DVN+G       + DT
Sbjct: 254 YSGERPLFDLYSIEKEIEHAMSRKVELKSGGYLIFDQTEALTTVDVNTGSFVSGKNLSDT 313

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEAA+ IARQLRLR+L G+I++DFIDM+E     +V  +L++++  DR+R  V  
Sbjct: 314 IFKTNLEAAQCIARQLRLRNLGGIIIIDFIDMDEDTQRAAVLGELQKAVALDRSRTGVNG 373

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            +  GL+EM+R+R R S+     + C+ C+G G +++  +V   ILR +     Q+ A  
Sbjct: 374 FTPLGLVEMTRKRTRESLAHILCEPCSACQGRGELKTAQTVCYEILRELLREARQFNARE 433

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + V     V+  LL+++  ++       G  I++++      + F I
Sbjct: 434 LRVLAAPKVIDMLLDEESQSLANLSDFIGKPISLLVEPSCNQESFDI 480



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +  +ETR+ ++ +  V+EL  E      + GN+Y   V RV P +Q+AFV+
Sbjct: 1  MSEEILINVT-PQETRIAMMENGVVQELQIERSTSLGLVGNVYRGVVCRVLPGMQSAFVE 59

Query: 61 YGGNRHGFLPFLEI----HPDYYQIPF 83
           G  R  FL   +I      D  Q+P 
Sbjct: 60 IGLQRAAFLHAGDIFECGQSD-SQLPI 85


>gi|149910584|ref|ZP_01899222.1| ribonuclease G [Moritella sp. PE36]
 gi|149806312|gb|EDM66287.1| ribonuclease G [Moritella sp. PE36]
          Length = 491

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 227/484 (46%), Gaps = 8/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      ++ + + A
Sbjct: 13  PSETRVALIENGILQEIHVEREAKRGIVGNIYKGKVSRVLPGMQAAFIDIGLDKAAFLHA 72

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V        G        K  +   I ++++  Q + VQ+VK+  G KGA +TT ++
Sbjct: 73  SDIVPHTECVAAGEK------KHFKVADISQLVRQGQDITVQVVKDPMGTKGARLTTDIT 126

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP +S      R   +  + ++  +     +V    G I+RTA       EI
Sbjct: 127 LPSRYLVFMPGSSHVGVSQR--IDCEEERSRLKAITEAQVDELGGYIIRTAADGVRDKEI 184

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  YL RLW  V +   ++ +  ++Y++ +L  R IRD     + +I V     Y E 
Sbjct: 185 EQDIAYLKRLWTKVLQRQRSNPSASMLYQDPSLAFRIIRDFVGSPLDKIRVDSRLAYTEL 244

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            +F +  +P     +  Y    PIF    +E +     + +VTL S GY+II+QTEA+ +
Sbjct: 245 CEFTESYVPELVSALELYTGERPIFEMYDVENESQRALERKVTLKSGGYLIIDQTEAMTT 304

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +EDT   TN+E+ + IARQLRLR+L G+I++DFIDM+  ++ R V +
Sbjct: 305 IDINTGAFVGHRNLEDTIFNTNVESTQAIARQLRLRNLGGIIIIDFIDMQSSEHRRRVME 364

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +L  DRA+      S  GL+EM+R+R R S+       C  C G G +++  +V  
Sbjct: 365 CLEAALSHDRAKTNTHDFSALGLVEMTRKRTRESLEHVLCSDCPTCDGRGSVKTVETVCY 424

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            I R V      Y A    V+    V  Y+  ++  +I E E   G  + +        +
Sbjct: 425 EIFREVTRVNRAYDADQFNVYASVAVAEYIEKEESHSIAELELFMGKQVKIKPEPLYLQE 484

Query: 562 LFYI 565
            F +
Sbjct: 485 QFDV 488



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 2  ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            ++L++ +   ETRV ++ +  ++E+  E E K+ I GNIY  KV+RV P +QAAF+D 
Sbjct: 4  TTELLVNVT-PSETRVALIENGILQEIHVEREAKRGIVGNIYKGKVSRVLPGMQAAFIDI 62

Query: 62 GGNRHGFLPFLEIHP 76
          G ++  FL   +I P
Sbjct: 63 GLDKAAFLHASDIVP 77


>gi|294673426|ref|YP_003574042.1| ribonuclease, Rne/Rng family [Prevotella ruminicola 23]
 gi|294472505|gb|ADE81894.1| ribonuclease, Rne/Rng family [Prevotella ruminicola 23]
          Length = 524

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 130/571 (22%), Positives = 236/571 (41%), Gaps = 72/571 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    ++  + +L D ++ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVIIDV-QPKDISIALLEDKQLVEYQQEQRTASFSVGNIYVAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            G  R  FL +L++         Y +   SDR+ L               +    G +  
Sbjct: 60  VGAERVAFLHYLDLGTQFNSYEKYLKQVVSDRKKLYPIQKAH-----IQPELKKDGSIAN 114

Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
                 E +  I      T+   +                         F  +Y +    
Sbjct: 115 TLKVGQEILVQIVKEPINTKGPRLTCE--------------------LSFAGRYLVLIPF 154

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++   +  +I K E  ++   +   +                  I R +        L  
Sbjct: 155 EDGVSVSTKIKKGEERSRLKQLIQSIKPKNF-----------GVIVRTVAEGKRAAELDA 203

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             + L                     I +  +   R              P L +EE + 
Sbjct: 204 ELKILLKRWE--------------DVISKVQKTTER--------------PQLCFEEESR 235

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
               +RDL+      I V+    Y E K+++ L+ P    IV+ Y    PIF    +  Q
Sbjct: 236 AVALLRDLFNPTYDGIHVNDSGIYDEIKNYLGLIAPEKKDIVKLYNGTVPIFDNFDVTKQ 295

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQ 413
           L S     V      Y+II  TEA+  +DVNSG   ++   ++  AL+TNL AA+E+ARQ
Sbjct: 296 LKSGFGKTVNYKHGAYLIIEHTEAMHVVDVNSGTRIKKENNQEANALETNLGAADELARQ 355

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLRD+ G+I+VDFIDM+  ++ + + +++ ++++KDRA+  +  +S FGL++++RQR+R
Sbjct: 356 LRLRDMGGIIIVDFIDMKLPEDRQLLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVR 415

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            ++  +  + C  C G G I+S      ++   ++  + +       +H H  V  Y+  
Sbjct: 416 PAMNVNVEETCPTCFGKGTIKSSILFTDTLESKIDTLVNKIGMRKFYLHVHPYVAAYINQ 475

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFY 564
              +  ++++ ++G+ + V+   +LA   + 
Sbjct: 476 GLFSLKMKWQMKYGLGVRVIPSQKLAFLQYE 506


>gi|332879537|ref|ZP_08447232.1| S1 RNA binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682503|gb|EGJ55405.1| S1 RNA binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 525

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 127/571 (22%), Positives = 226/571 (39%), Gaps = 72/571 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D R+ E   E      + GNIYLAKV ++ P L A FV+
Sbjct: 1   MTSEVIVDV-QPKEISIALLEDKRLVEFQKEGRSASFVVGNIYLAKVRKLMPGLNACFVN 59

Query: 61  YGGNRHGFLPFLEIHP------DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            G  R  FL +L++ P       Y +   SD++ L   S         + D    G V  
Sbjct: 60  VGYERDAFLHYLDLGPKFNSYTKYLKQVTSDKKKLYPFSKA-----SILPDLEKDGSVQT 114

Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
                 E +  I      T+   +                         F  ++ +    
Sbjct: 115 TLQQGQEILVQIVKEPISTKGPRLTCE--------------------LSFPGRFLVLMPF 154

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +++  +  +I   E   +   +   +                  I R +        L  
Sbjct: 155 QDKVSVSSKIKSAEERARLKQLIQSIKPKNF-----------GVIVRTVAEGKRVAELDS 203

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             + L        I      ++   ++             +     N    ++   + ++
Sbjct: 204 ELKVLVKRCEDAFI-----KAQKASKLPELVFEETSRTVAMLRDLFNPSYENIYINDTDI 258

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
                                      KD++ L+ P  A IV+QY    PIF    +  Q
Sbjct: 259 FSEV-----------------------KDYVTLIAPESAGIVKQYTGKLPIFDNFDVTKQ 295

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQ 413
           + S     V+     Y+II  TEAL  +DVNSG  ++    ++  AL  NL AA+E+ARQ
Sbjct: 296 IKSSFGKTVSYKHGAYLIIEHTEALHVVDVNSGNRSKSKDGQEANALDVNLGAADELARQ 355

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLRD+ G+IVVDFIDM   ++ + + +++ E++KKDRAR  +  +S FGL++++RQR+R
Sbjct: 356 LRLRDMGGIIVVDFIDMNLAEDRQKLYERMCENMKKDRARHNILPLSKFGLMQITRQRVR 415

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
             +  +  +VC  C G G ++S       +   +     +    N  +H H  V  Y+  
Sbjct: 416 PVMDVNVDEVCPTCFGKGTVKSSFLFTDVLESKISTMANKLGIKNFTLHVHPYVAAYINQ 475

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFY 564
              +   +++ ++G  + V+   +L    + 
Sbjct: 476 GIVSLKRKWQVKYGFGLKVIPSQKLGFLQYE 506


>gi|167618465|ref|ZP_02387096.1| ribonuclease G [Burkholderia thailandensis Bt4]
 gi|257139750|ref|ZP_05588012.1| ribonuclease G [Burkholderia thailandensis E264]
          Length = 488

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 197/396 (49%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +     
Sbjct: 90  IEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAERE 149

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
                +   +      G I+RT     T  E+  D  YL + W  +           L+Y
Sbjct: 150 AVRARLTAVIPADEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTSLLY 209

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++ +L +R +RD    D + I V   + ++   DF     P+ +  +  Y    P+F   
Sbjct: 210 QDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLFDLY 269

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  
Sbjct: 270 NIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHT 329

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+EM+R
Sbjct: 330 IARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVEMTR 389

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+     + C  C+G G +++  +V   ILR +     Q+      V     V+ 
Sbjct: 390 KRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQVID 449

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             L+++   +       G  +++ +   L+ + + I
Sbjct: 450 LFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|167835990|ref|ZP_02462873.1| ribonuclease G [Burkholderia thailandensis MSMB43]
          Length = 488

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 116/396 (29%), Positives = 198/396 (50%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +     
Sbjct: 90  IEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAERE 149

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
                +   +      G I+RT     +  E+  D  YL + W  +           L+Y
Sbjct: 150 AVRARLTAVIPADEKGGYIVRTIAEDASSDELAGDVAYLRKTWATIVGQGQRLPPTSLLY 209

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++ +L +R +RD    D + I V   + ++   DF     P+ +  +  Y    P+F   
Sbjct: 210 QDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLFDLY 269

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  
Sbjct: 270 NIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHT 329

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V + S  GL+EM+R
Sbjct: 330 IARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALARDRTRVTVNSFSQLGLVEMTR 389

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+     + C  C+G G +++  +V   ILR +     Q+      V     V+ 
Sbjct: 390 KRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIGSQQVID 449

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             L+++   +       G  +++ +   L+ + + I
Sbjct: 450 LFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|225154883|ref|ZP_03723381.1| ribonuclease, Rne/Rng family [Opitutaceae bacterium TAV2]
 gi|224804413|gb|EEG22638.1| ribonuclease, Rne/Rng family [Opitutaceae bacterium TAV2]
          Length = 594

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/577 (21%), Positives = 241/577 (41%), Gaps = 72/577 (12%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           + LI  S   E RV +L D  +++ + E  +  ++ G IY  ++  ++P L+AAFVD G 
Sbjct: 81  RELIINSEPLEKRVALLIDGVLDKFEIERANADRMVGGIYKGRIKNLDPGLKAAFVDIGY 140

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
           +++ FL + ++ P                     +  E V  +   G    P + +++++
Sbjct: 141 SKNAFLHYWDMLP-----------------AATDSSIEVVRVNKKKGAAPRPAEPTVKDI 183

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +     +   +         V+       G           +Y +     ++  +  +
Sbjct: 184 PTLYPPGSDIVIQ---------VTKGPIGTKGPRTTTNLSLPGRYLVLMPFSDQCGISRK 234

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           I   +  ++   +   L++                I R        +        L    
Sbjct: 235 IEDNKERHRLKQLVNELTIP----------EGMGVIVRTAGEGKKARYFVRDLHLLLKTW 284

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
               I R     R+   + ++ + + R   +                             
Sbjct: 285 AE--IQRKMQDVRSPACLYQEPDIVERTVRDFL--------------------------- 315

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            +++  +++   + +   +  +  +       +  Y+D  PIF R  IE Q++   Q +V
Sbjct: 316 TEEVDRVLIDNTEDHARCQAAVAQISSRSKNKIALYKDNIPIFERFNIERQIEQTFQRKV 375

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           +LPS G +II++TEAL++IDVN+G         ++     NLEAA EIARQ+RLR+L GL
Sbjct: 376 SLPSGGEIIIDETEALIAIDVNTGSHKNKGGDEKNVIYSVNLEAAVEIARQIRLRNLGGL 435

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           I+ DFIDM+E+++   V +KL ES+ +DRA+  +  IS  G+L+M+RQR + S+  +   
Sbjct: 436 IICDFIDMKERRHRNGVYEKLCESMSQDRAKTHILPISQLGILQMTRQRQQESLTSNMYV 495

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQ------YTAHNIIVHTHSDVVLYLLNQKR 536
            C YC+G G ++S +++++ + R +   + +         +++ V  H  ++  L ++  
Sbjct: 496 DCPYCRGRGIVKSATTMSVELQRKLSSIVRRLIARNDGKTYSLRVLVHPGILDRLRSEDA 555

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
             +V  E  +GV +          + F I   S  + 
Sbjct: 556 ELLVRMEREYGVKLAFRADPSYHVENFKIINTSTGEE 592


>gi|146329834|ref|YP_001209405.1| ribonuclease g [Dichelobacter nodosus VCS1703A]
 gi|146233304|gb|ABQ14282.1| ribonuclease g [Dichelobacter nodosus VCS1703A]
          Length = 496

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 118/400 (29%), Positives = 213/400 (53%), Gaps = 1/400 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++  I E++   + +LVQ++K+  G KGA +TT +S++ R+ V +P  S    +S KI +
Sbjct: 95  KEQKISEILHEGESILVQVLKDPIGTKGARLTTEISISSRFLVFLP-KSHDIGVSIKIVS 153

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              R+NL+E+          G I+RTA  +     ++ D +YL R+WD++      S A 
Sbjct: 154 ETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAMRADMQYLHRVWDSILTTYRESYAS 213

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y +  L +R +RD     + ++IV   + YR    F    +   A  +  Y+    +
Sbjct: 214 TLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAMAQFAGNFLIEMADRITLYDGDRTL 273

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F R G+E +++   +  V L S GY++I+QTEA+ +IDVN+G    +   EDT  +TNLE
Sbjct: 274 FDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTTIDVNTGGFVGKSSQEDTIFKTNLE 333

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+ IARQLR+R+L G+I++DFIDM   ++ +SV   L  +L  D+++  +  IS  G++
Sbjct: 334 AAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVDALLNALAGDKSKYTISPISPLGII 393

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EM+R+R R S+ +   + C  C G GY+++  ++   + R +     +Y    + V  + 
Sbjct: 394 EMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVYELFRDLMREAREYAPKGMTVIGNP 453

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           D + ++  ++     + +    + I +      +   + I
Sbjct: 454 DFIEFIREEESMAFSDLQILLKMPIRLQSDGAYSQDKYDI 493


>gi|237745555|ref|ZP_04576035.1| RNase G [Oxalobacter formigenes HOxBLS]
 gi|229376906|gb|EEO26997.1| RNase G [Oxalobacter formigenes HOxBLS]
          Length = 487

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 114/414 (27%), Positives = 205/414 (49%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                         +   I+ ++ + Q L+V+++K+  G KGA ++T +S+AGR  V +P
Sbjct: 71  DDILEAHQNDSSAGKPVPIERMLTDGQSLMVRVIKDPLGTKGARLSTQISIAGRLLVYLP 130

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    R             + + L      G I+RT     ++ ++K D  +L ++
Sbjct: 131 QEKHIGISQRIQDEKERELLKNRVQQFLTDEEKGGFIIRTMAEDASEDDLKTDAVFLQKI 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W ++++ A  + AP L+Y++  L +R +RD   ++ + I V   + + + ++F     P 
Sbjct: 191 WRSLKDKAYLASAPTLLYQDLTLPERILRDFVHENTARIRVDSHEEFLKLREFAATYTPD 250

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               +  YE   P+F    +E ++       V L S GY+II+QTEA+ +IDVN+G    
Sbjct: 251 ILERLSFYEGDRPLFDLYNVEEEIGLALSRRVNLKSGGYLIIDQTEAMTTIDVNTGGFVN 310

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
               +DT  +TNLEAA  IARQLRLR+L G+I++DFIDME  ++ R+V  +L+++L KDR
Sbjct: 311 GRTFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENAEHRRAVMDELRKTLAKDR 370

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            +V +   S  GL+EM+R+R R S+     + C  C G G +++  +V   I+R +    
Sbjct: 371 TKVSLSDFSALGLVEMTRKRTRESLAHILCEPCPVCHGQGQVKTAQTVCYEIMRDILREA 430

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Q++     +     V+   L ++   +       G  I++ +        + +
Sbjct: 431 RQFSPKEFRILASQIVIDLFLEEESQHLASLGDLIGKPISLQVESAYTQTQYDV 484



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ +  +ETR+ V+ +   +EL  E    + + GN+YL +V RV P +Q+AF+D
Sbjct: 1  MKEDILINVT-PQETRIAVVSEGSTQELHIERSQTRGLAGNVYLGRVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHIDDI 73


>gi|294637784|ref|ZP_06716058.1| ribonuclease G [Edwardsiella tarda ATCC 23685]
 gi|291089076|gb|EFE21637.1| ribonuclease G [Edwardsiella tarda ATCC 23685]
          Length = 489

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER--LKAIVAPHCDELGGFIIRTAAEGADDEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    + +  ++Y E  L +R +RD     +  I V     Y   +DF +  MP  
Sbjct: 194 IKVMERKRRNQSKCMLYGELALAQRVLRDFAGASLDRIRVDSRLTYDLLQDFTQEYMPEI 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    +  V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TPCLDLYSGKQPIFDMYDVENEIQRALERRVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDRA
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMNSEDHRRRVLHSLEQALSKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   +LR +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCGECPTCHGRGTVKTVETVCYEVLREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHALAEVELFVGKQVKVQIEPLYSQEQFDV 486


>gi|221134077|ref|ZP_03560382.1| ribonuclease G [Glaciecola sp. HTCC2999]
          Length = 488

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/414 (29%), Positives = 210/414 (50%), Gaps = 3/414 (0%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +     +DV      +  I+E++++ Q ++VQ+VKE  G KGA +TT +++  RY V MP
Sbjct: 75  IHNEVVDDVNPNHITKKDIRELVRDGQDIVVQVVKEPIGTKGARLTTDITIPSRYLVFMP 134

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           + +      R        +   +           G ILRTA     + E++ D E+L RL
Sbjct: 135 SVTHVGVSQRIEDADERER--LKDIVSKFCDENGGFILRTAAEGVNEHELEADAEFLKRL 192

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           WD ++   + + A ++++E+  L +R IRD    +I +I +  +  + E  +F +  +P 
Sbjct: 193 WDIIQTR-MKTKANNVLFEDLPLARRVIRDFTGTEIEKIRIDSKLSFNELVEFTQEYVPE 251

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               +  Y+   PIF    +E +     +  V L S GY+II+QTEA+ +ID+N+G    
Sbjct: 252 LHDKLEYYKGERPIFDLYDVENEAQRALKRRVDLKSGGYLIIDQTEAMTTIDINTGAFVG 311

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T   TN+EA + IARQLRLR+L G+I++DFIDM E  + R V + L  +   DR
Sbjct: 312 HRNLEETIFNTNVEATQAIARQLRLRNLGGMILIDFIDMTEPDHQRRVLQSLTHACSFDR 371

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           A+  +   +  GL+EM+R+R R S+  +  + C  C+G G I++  ++   ++R +    
Sbjct: 372 AKTNIHGFTALGLIEMTRKRTRESLEHTLCEDCPVCEGRGSIKTIETICFEVMREIVRVN 431

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             Y A   +V+    V   L+ ++ A + E E      INV          F +
Sbjct: 432 RAYDADKFVVYASPAVAEALMGEESAMLAEVELFVAKQINVQTEHLYNQDKFDV 485


>gi|28899461|ref|NP_799066.1| ribonuclease G [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839776|ref|ZP_01992443.1| ribonuclease G [Vibrio parahaemolyticus AQ3810]
 gi|260363371|ref|ZP_05776223.1| ribonuclease G [Vibrio parahaemolyticus K5030]
 gi|260879305|ref|ZP_05891660.1| ribonuclease G [Vibrio parahaemolyticus AN-5034]
 gi|260895736|ref|ZP_05904232.1| ribonuclease G [Vibrio parahaemolyticus Peru-466]
 gi|260900308|ref|ZP_05908703.1| ribonuclease G [Vibrio parahaemolyticus AQ4037]
 gi|28807697|dbj|BAC60950.1| cytoplasmic axial filament protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746700|gb|EDM57688.1| ribonuclease G [Vibrio parahaemolyticus AQ3810]
 gi|308087443|gb|EFO37138.1| ribonuclease G [Vibrio parahaemolyticus Peru-466]
 gi|308093123|gb|EFO42818.1| ribonuclease G [Vibrio parahaemolyticus AN-5034]
 gi|308107525|gb|EFO45065.1| ribonuclease G [Vibrio parahaemolyticus AQ4037]
 gi|308111209|gb|EFO48749.1| ribonuclease G [Vibrio parahaemolyticus K5030]
 gi|328471402|gb|EGF42297.1| ribonuclease G [Vibrio parahaemolyticus 10329]
          Length = 489

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNHYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I+V     Y   K+F    +P  
Sbjct: 194 LKVMERRSKYKTRSTLYGELGLAQRILRDFVGTELDKILVDSRLEYENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASEEHRQRVLTSLEAALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSGCPTCEGRGTVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A N +V+    V   LL  +   + E E   G  + +        + F +
Sbjct: 434 AYDADNFVVYASPFVAEALLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|269140474|ref|YP_003297175.1| ribonuclease G [Edwardsiella tarda EIB202]
 gi|267986135|gb|ACY85964.1| ribonuclease G [Edwardsiella tarda EIB202]
 gi|304560266|gb|ADM42930.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Edwardsiella tarda FL6-60]
          Length = 489

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R   +    +   +           G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQR--IDSEAERERLKAIVAPHCDELGGFIIRTAAEGADDEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    ++Y E  L +R +RD     +  I V     Y   +DF    MP  
Sbjct: 194 IKVMERKRRNKTKCMLYGELALAQRVLRDFAGASLDRIRVDSRLTYDLLQDFTSEYMPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    +  V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TPCLELYSGKQPIFDMYDVENEIQRALERRVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDRA
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSCEDHRRRVLHSLEQALSKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   ILR +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCGECPTCHGRGTVKTVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHALAEVELFVGKQVKVQIETLYSQEQFDV 486


>gi|163802909|ref|ZP_02196797.1| cytoplasmic axial filament protein [Vibrio sp. AND4]
 gi|159173316|gb|EDP58142.1| cytoplasmic axial filament protein [Vibrio sp. AND4]
          Length = 489

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  KK  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKKQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNRYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +++V     +   K+F    +P  
Sbjct: 194 QKVMERRAKYKTRSTLYGELGLAQRILRDFVGTELDKVMVDSRLEFEHLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMASEEHRKRVLVSLETALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCVGRGSVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A N +V+  + V   LL  +   + E E   G  + +        + F +
Sbjct: 434 AYDADNFVVYASASVAETLLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|90580179|ref|ZP_01235986.1| putative ribonuclease G and E [Vibrio angustum S14]
 gi|90438481|gb|EAS63665.1| putative ribonuclease G and E [Vibrio angustum S14]
          Length = 489

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  KK  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKKQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K + +  +     G I+RTA       E+ +D  +L  LW
Sbjct: 136 ASHVGVSQRIESEKERDRLKKAVLQHCDDL--GGFIIRTAAEGANTDEVAQDAAFLKHLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    +I  I V   + + + K+F    +P  
Sbjct: 194 RKVLERRAKYKPRSMLYGELGLAQRILRDFVGTEIDNIKVDSRQAFDKLKEFTDEFVPEV 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++      +V + S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDNIEYYSGQQPIFDLYDTESEIQRSLDRKVEMKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V + L+++L  DR 
Sbjct: 314 RNLDETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMISEEHQQRVLQALEQALSYDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C G G +++  SV   +LR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPSCDGRGTVKTVESVCYEVLREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   IV+  S V   L+  +   + E E   G  + +        + F +
Sbjct: 434 AYDADRFIVYVSSAVGEALMGDESHALAELEVFIGKQVKIKPEPLYNQEQFDV 486


>gi|165976227|ref|YP_001651820.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|190150138|ref|YP_001968663.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303251192|ref|ZP_07337371.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252385|ref|ZP_07534282.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307261291|ref|ZP_07542966.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307263475|ref|ZP_07545090.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|165876328|gb|ABY69376.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|189915269|gb|ACE61521.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302649926|gb|EFL80103.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860307|gb|EFM92323.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306869022|gb|EFN00824.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871118|gb|EFN02847.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 491

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 225/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPIGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  + E         ++Y E  L +R +RD     IS I +  +  Y + 
Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLVEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   +V  YL+N++  A+I E EA  G  I + +      
Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKKIEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488


>gi|320353219|ref|YP_004194558.1| RNAse G [Desulfobulbus propionicus DSM 2032]
 gi|320121721|gb|ADW17267.1| RNAse G [Desulfobulbus propionicus DSM 2032]
          Length = 501

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 129/411 (31%), Positives = 227/411 (55%), Gaps = 2/411 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                 P        I +++   Q +LVQI KE  G+KGA +T  ++L  R  V MP T 
Sbjct: 89  KLRSIPPSHLPATPAINDILHEGQEILVQIAKEPIGSKGARLTCNITLPCRNLVFMPLTD 148

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               ISRKI +   R+ L++    +  P G G I+RT   +     ++ D E+L+ LWD 
Sbjct: 149 HIG-ISRKIEDEATRQQLRDRI-EVLRPPGTGFIMRTVAENIGNEALEADMEFLLLLWDE 206

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +   A  + AP L+Y++ ++I R++RD + ++I+E+++   + Y +   + K   P    
Sbjct: 207 ILTKAQKAQAPCLIYKDLDIILRSVRDFFTEEINELVIDNAEVYEQLLSYAKTFAPQLQD 266

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y+   P+F R G+E  ++S    +V L S GY+II  TEAL  IDVN+GR      
Sbjct: 267 KITYYDSDLPLFERYGVEADINSALDKKVWLRSGGYIIIEPTEALTVIDVNTGRYVGASD 326

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           + +T  +TN+EA  EIARQLRLR+L G+I++DFIDME +++   +    +E+++ D+++V
Sbjct: 327 LAETIFKTNMEAVREIARQLRLRNLGGIIIIDFIDMENEQHREELYAAFQEAMRNDKSKV 386

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            +  +S FGL++M+R+R+  S++++  + C YC G G+I+S+ ++   I R +     + 
Sbjct: 387 NILKLSEFGLVQMTRKRLSESLIQTMCEPCLYCGGDGFIKSRRTICHEIFRKISRDARKI 446

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              ++ +  H  +   LLN++  TI + E R      ++   ++  K + +
Sbjct: 447 GGSHVTIKVHPHIAEMLLNEESYTIEQLEQRTEKRFTIIPVPDMHIKRYDV 497



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+A+   E R+ ++ +  + E   E   +K + GNIYL +V RV P + AAFVD
Sbjct: 1  MYTDILINATF-YENRIALVENGHLREFHLERVSEKGLIGNIYLGRVVRVLPGIDAAFVD 59

Query: 61 YGGNRHGFLPFLE---IHPDYYQ 80
           G +R GFL   E   I  + YQ
Sbjct: 60 IGLDRTGFLYVDEAFYIFSENYQ 82


>gi|121534080|ref|ZP_01665905.1| ribonuclease, Rne/Rng family [Thermosinus carboxydivorans Nor1]
 gi|121307183|gb|EAX48100.1| ribonuclease, Rne/Rng family [Thermosinus carboxydivorans Nor1]
          Length = 473

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 221/390 (56%), Gaps = 5/390 (1%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
            Q +L+QIVK+  G+KG   TT L L GRY+VL P  S G  +SR+I +  +RK L+++A
Sbjct: 83  GQDILIQIVKDASGSKGPRTTTGLMLPGRYAVLAP-YSDGTGVSRRIEDDAERKRLRQLA 141

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
             ++   G+G+I+RTA A  ++ E+ RD EYL  LW  +   A  S AP L+Y + +L  
Sbjct: 142 DKVKPD-GVGMIVRTAAAGCSETELARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAI 200

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           R +RD    D++E+++     Y    D ++ L P+    V+ Y+ P  IF   GI   L+
Sbjct: 201 RIVRDYLDDDVTEVVIDNRDAYGRVCDLLQHLAPAALAKVKFYQYPEDIFVHYGIAADLN 260

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
            L + EV L   G+++I+QTEAL  IDVN+GR   +  + DT  + N+EAA EIARQLRL
Sbjct: 261 RLLKREVELACGGFLVIDQTEALTVIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRL 320

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RD+ G+I+VDFIDM + ++ ++V   L E +++DR R ++  +++ GL+E++R++ R  +
Sbjct: 321 RDIGGIIIVDFIDMAKAEHKQAVLAFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDL 380

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQK 535
                  C  C G G I+S  +VA++I R +     Q   A  +++  H  VV  L   +
Sbjct: 381 NSLMYSECPCCAGRGRIQSPETVAINIRRHLRWAAAQRKLASRLVIQAHPQVVEIL--SR 438

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYI 565
           +  +   E      + +     +  + + I
Sbjct: 439 QGELARLERELARKLTLESAPAMHPECYSI 468



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   + I +   EE+R+ ++ D  + E   E      + GNIY  KV  V P +QAAF+D
Sbjct: 1  MGKTI-IASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFID 59

Query: 61 YGGNRHGFLPF 71
           GG+++ +L  
Sbjct: 60 IGGDKNAYLYV 70


>gi|312796939|ref|YP_004029861.1| ribonuclease G [Burkholderia rhizoxinica HKI 454]
 gi|312168714|emb|CBW75717.1| Ribonuclease G (EC 3.1.4.-) [Burkholderia rhizoxinica HKI 454]
          Length = 489

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 199/399 (49%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           Q  I++++   Q L+VQ+VK+  G KGA ++T +S+AGR  V +P         +  +  
Sbjct: 88  QQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEV 147

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                   +   L V    G I+RT     +   +  D  YL + W  ++  A       
Sbjct: 148 EREAVRARLTSVLPVDERGGYIVRTIAEDASSEALSNDVAYLRKTWATIQAQATRMPPTT 207

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++ NL +R +RD    D + I V   +  +   +F     P+ A  +  Y    P+F
Sbjct: 208 LLYQDLNLAQRVLRDFVNDDTTRIQVDSRETSQMLVEFANEFTPAVASKLHHYTGERPLF 267

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEA
Sbjct: 268 DLYNIEAEILRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 327

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+E
Sbjct: 328 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLGELKKALSRDRTRVTVNGFSQLGLVE 387

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     ++C  C+G G +++  +V   ILR +     Q+      V     
Sbjct: 388 MTRKRTRESLAHVLCELCPVCQGKGQVKTARTVCYDILREILRESRQFNPREFRVVAAQQ 447

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+   L ++   +       G  +++ +   L+ + + I
Sbjct: 448 VIDLFLEEESQHLAMLCDFIGKPVSLQVESNLSQEQYDI 486



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AFVD
Sbjct: 1  MNEEILINVT-PQETRVAIVQQGAVQELHIERTLSRGRVGNIYLGKVVRVLPGMQSAFVD 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   +I HP
Sbjct: 60 IGLERAAFLHVADIWHP 76


>gi|312131598|ref|YP_003998938.1| ribonuclease, rne/rng family [Leadbetterella byssophila DSM 17132]
 gi|311908144|gb|ADQ18585.1| ribonuclease, Rne/Rng family [Leadbetterella byssophila DSM 17132]
          Length = 520

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 152/563 (26%), Positives = 260/563 (46%), Gaps = 61/563 (10%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           +N++ I A+   + R+ ++R+ R+ E   +        G+IY   V +V     A     
Sbjct: 4   SNELYISATSKGD-RIALVRNKRLIEYHVDETEHHFAVGDIYFGSVKKVVSGNNA----- 57

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
                    F++I                                              E
Sbjct: 58  --------AFIDIG--------------------------------------------HE 65

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
           + A +          S+I    D+++            +  + ++Q  I +V+     +L
Sbjct: 66  KDAFLHYHDLSPNILSLIKFTKDIIAKRPVSPRLKGFKLEAQIEKQGKISDVLSKNMPIL 125

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241
            Q+VKE   +KG  ++  +S+AGRY VL+P  S    IS+KIT+  +R+ L ++   ++ 
Sbjct: 126 AQVVKEPISSKGPRLSCDISIAGRYIVLVPF-SNSINISKKITSKQERQRLHKLMSSVKP 184

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
               GVI+RT   +    +++RD E+ +  W+   +    ++    V  E +     +RD
Sbjct: 185 E-NFGVIVRTVAENMDVEDLQRDLEHCLEKWELGVKALRTAMPRDRVISEMDRAASILRD 243

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
           +   D   I+V  ++ Y + K+ +  + P   +I++ ++    IF   GIE QL SL   
Sbjct: 244 MLNDDFDSIVVDTKESYDKIKNLLHAIAPQKEKILKLHQGKAKIFEHYGIEKQLKSLFGR 303

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            VTLP  GY++I  TEAL  IDVNSG +++ E   E TAL  N EAA EIARQLRLRD+ 
Sbjct: 304 TVTLPGGGYLVIEHTEALHVIDVNSGNKASSEPNQEATALNVNKEAAIEIARQLRLRDMG 363

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G++V+DFIDM++ +N + V   L+E +K DR++  +  IS FGL +++RQR+R  +   T
Sbjct: 364 GIVVIDFIDMKKAENKKEVHDVLREEMKGDRSKYTILPISKFGLSQITRQRVRPEISVDT 423

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            + C  C G G I++  SV   I   +E  LL+     + +  H  V  Y      +  +
Sbjct: 424 RETCPTCGGTGSIQASISVTDQIENHLEHLLLKQNEAKVSIMVHPFVYAYYKEGFISRQM 483

Query: 541 EYEARFGVSINVVIGIELADKLF 563
           ++  ++   IN++    L    +
Sbjct: 484 KWFFKYKKWINLIKDSTLGLMEY 506


>gi|153830408|ref|ZP_01983075.1| ribonuclease G [Vibrio cholerae 623-39]
 gi|148874110|gb|EDL72245.1| ribonuclease G [Vibrio cholerae 623-39]
          Length = 474

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 61  HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 120

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA     + E+ +D  +L RLW
Sbjct: 121 ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 178

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    ++++I++   + +   K+F    +P  
Sbjct: 179 SKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 238

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 239 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 298

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 299 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRV 358

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 359 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 418

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 419 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 471


>gi|253996000|ref|YP_003048064.1| Rne/Rng family ribonuclease [Methylotenera mobilis JLW8]
 gi|253982679|gb|ACT47537.1| ribonuclease, Rne/Rng family [Methylotenera mobilis JLW8]
          Length = 483

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 124/399 (31%), Positives = 211/399 (52%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           +  IQEV+   Q ++VQ++KE  G KGA +TT++S+AGR+ V +P         R     
Sbjct: 82  KRPIQEVLHEGQSVMVQVIKEPIGTKGARLTTHISIAGRFLVYLPQQEHIGVSQRIEIEA 141

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                   +   L      G I+RT   + T  E+  D +YL + W ++++ ++      
Sbjct: 142 ERESLKARLLGLLPADRVGGYIIRTMSEAATDEELLADIDYLNKTWKHIKDKSITVPERT 201

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L++++ NL  R +RD+ C D   + V   + Y+   DF  L   +    +  Y+   P+F
Sbjct: 202 LIFQDLNLPMRVLRDVLCADTEMVRVDSSETYQRLVDFSNLYAIAALDKLVHYQGERPLF 261

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE +++     +V L S GY+I +QTEAL ++DVN+G       + DT  +TNLEA
Sbjct: 262 DLYSIEQEIEKAMSRKVELKSGGYLIFDQTEALTTVDVNTGSFVSGKNLSDTIFKTNLEA 321

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+ IARQLRLR+L G+I++DFIDM+E     +V  +L++++ +DRAR  +   +  GL+E
Sbjct: 322 AQSIARQLRLRNLGGIIIIDFIDMDEDVQRAAVLDELQKAVARDRARTGINGFTPLGLVE 381

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C+ CKG G +++  +V   ILR +     Q++A  + V     
Sbjct: 382 MTRKRTRESLAHILCEPCSTCKGRGELKTAQTVCYEILRELLREARQFSARELRVLAAPK 441

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+  LL+++  ++          I++ +    A + F I
Sbjct: 442 VIEMLLDEESQSLANLSDFIAKPISLQVESSYAQESFDI 480



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +  +ETR+ ++ +  V+EL  E      + GNIY   V RV P +Q+AFV+
Sbjct: 1  MSEEVLINVT-PQETRIAMMENGVVQELQIERSSSLGLVGNIYRGVVCRVLPGMQSAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 IGLQRAAFLHAGDV 73


>gi|153802101|ref|ZP_01956687.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-3]
 gi|124122345|gb|EAY41088.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-3]
          Length = 437

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 24  HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 83

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA     + E+ +D  +L RLW
Sbjct: 84  ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 141

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    ++++I++   + +   K+F    +P  
Sbjct: 142 SKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 201

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 202 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 261

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 262 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRV 321

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 322 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 381

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 382 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 434


>gi|330817842|ref|YP_004361547.1| Ribonucleases G and E [Burkholderia gladioli BSR3]
 gi|327370235|gb|AEA61591.1| Ribonucleases G and E [Burkholderia gladioli BSR3]
          Length = 489

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 117/404 (28%), Positives = 197/404 (48%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                   I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +
Sbjct: 83  HNSTPHQPIEKTVYEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQK 142

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
             +          +   +      G I+RT     T  E+  D  YL + W  +   A  
Sbjct: 143 IESEAEREAVRARLTAVIPAEEKGGYIVRTIAEDATGEELGADVTYLRKTWATIVAQAHR 202

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
                L+Y++ +L +R +RD    D S+I V   + +     F +   P+ +  +  Y  
Sbjct: 203 LPPTSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFARLSSFAREFTPAVSARLHHYTG 262

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
             P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +
Sbjct: 263 ERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFK 322

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S 
Sbjct: 323 TNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLGELKKALSRDRTRVTVNGFSQ 382

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+      V
Sbjct: 383 LGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREFRV 442

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 443 IGSQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|262401495|ref|ZP_06078062.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           sp. RC586]
 gi|262352210|gb|EEZ01339.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           sp. RC586]
          Length = 489

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    ++++I++     Y   K+F    +P  
Sbjct: 194 SKVIERRGKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRLEYENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALVKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVESVCFEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVADTLRGDESHALAELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|254507409|ref|ZP_05119544.1| ribonuclease G [Vibrio parahaemolyticus 16]
 gi|219549665|gb|EED26655.1| ribonuclease G [Vibrio parahaemolyticus 16]
          Length = 489

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     ++  +   G       G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEDE--RHRLKKVVGHYCDENGGFIIRTAAEGALDKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++++I+V   + +   K+F    +P  
Sbjct: 194 SKVMERKAKYKNRSTLYGELGLSQRILRDFVGTELTKILVDSRQEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TEKLELYEGDKPIFDMYDTENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALDKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVADTLHGEESHALAELEVFIGKQVKIQAEPLYIQEQFDV 486


>gi|32035513|ref|ZP_00135460.1| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208286|ref|YP_001053511.1| ribonuclease G [Actinobacillus pleuropneumoniae L20]
 gi|307254633|ref|ZP_07536464.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259084|ref|ZP_07540814.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|126097078|gb|ABN73906.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|306862428|gb|EFM94391.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866751|gb|EFM98609.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 491

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 225/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q ++VQ+VK+    KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  + E         ++Y E  L +R +RD     IS I +  +  Y + 
Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   +V  YL+N++  A+I E EA  G +I + +      
Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488


>gi|99034527|ref|ZP_01314506.1| hypothetical protein Wendoof_01000685 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 453

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 168/433 (38%), Positives = 254/433 (58%), Gaps = 1/433 (0%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
            ++Y +Q+VI   Q +LVQ+ KEERGNKGA+ TTY++L GRY V MPN+     +SR+I 
Sbjct: 1   YKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIE 60

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +   RK LKEI   + +P   G+I+RT G+ + K EI++D+ YL  LW ++++ A +   
Sbjct: 61  DANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNV 120

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+Y E ++I R++RD    D  E+IVSG++ +   + +    +       R Y    P
Sbjct: 121 PSLIYNEADVIMRSVRDFCS-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRLYRGYAP 179

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   GIE Q+  L+   V LPS G +II  TEA VSIDVNSG+ T E  IE+TA +TN+
Sbjct: 180 IFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNM 239

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EA  EI+RQ+ LR L+GLIVVDFIDM + +  R+VE  +K++ K D+A+VQ   I++FGL
Sbjct: 240 EAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGL 299

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +  SRQRI+ ++ E  T  C +CKG G ++S   +  SILR ++    +    +  +  H
Sbjct: 300 MVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAH 359

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
           S V+ ++ N KR T+   E  F +++NV I   L    F +++G  V        +    
Sbjct: 360 SAVIAHIFNNKRNTVSTIEKEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGY 419

Query: 585 SQAPSYDKNIECV 597
               S ++  +  
Sbjct: 420 QIGDSSNEEADNS 432


>gi|94264387|ref|ZP_01288178.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
 gi|93455216|gb|EAT05432.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
          Length = 715

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 182/488 (37%), Positives = 282/488 (57%), Gaps = 10/488 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R ALL+ S +     E+V+     G++      S+E     A      E+   +S 
Sbjct: 231 PEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGLEKNGFLSF 290

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           N       +       E  P+   +   IQ+++K  Q +LV++VKE  GNKG ++TTYLS
Sbjct: 291 NEIHPEYYQQ------EVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTYLS 344

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GR+ VLMP  S    ISRKI +   R  L+E+  GL +P G+G I+RTA    TK  +
Sbjct: 345 LPGRFLVLMPG-SDSAGISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKTAL 403

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D  +L+ LW  +R+   +  AP L+Y+E N+I R +RD Y  DI EI+V  E    + 
Sbjct: 404 SQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAEQV 463

Query: 322 KDFMKLLMPSYARIV--RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           ++F++LL  S  +    + ++   PIF +  +E Q++ + Q  V LPS G ++IN TEAL
Sbjct: 464 RNFLQLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTEAL 523

Query: 380 VSIDVNSGR-STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
           V+IDVNSGR S+++   E++    N+EAAEE+ARQLR+RDL GLIVVDFIDM    + R 
Sbjct: 524 VAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHTRE 583

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           VEKK++E +K+D+A+V    IS FGL+++SRQ++ + +  ++ K C YC+G G IRS  +
Sbjct: 584 VEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSVEN 643

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
           +ALS LR ++  + +  A  ++     +V  Y+LN+KR  ++E E  +G  I + +   +
Sbjct: 644 LALSHLRQIQTGMSRRRAKKVVCQLPMEVAQYILNKKREELLELEKEYGAEIVIEVDAAM 703

Query: 559 ADKLFYIE 566
                 ++
Sbjct: 704 LPADNRLD 711



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           K+LI+    EE R+ +L +++VE    ES  + +IKGNIY  +VT VE +LQAAFVD G 
Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282

Query: 64  NRHGFLPFLEIHPDYYQ 80
            ++GFL F EIHP+YYQ
Sbjct: 283 EKNGFLSFNEIHPEYYQ 299


>gi|89075277|ref|ZP_01161704.1| putative ribonuclease G and E [Photobacterium sp. SKA34]
 gi|89048958|gb|EAR54526.1| putative ribonuclease G and E [Photobacterium sp. SKA34]
          Length = 489

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  KK  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKKQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K + +  +     G I+RTA       E+ +D  +L  LW
Sbjct: 136 ASHVGVSQRIESEKERDRLKKAVLQHCDDL--GGFIIRTAAEGANTDEVAQDAAFLKHLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    +I  I V   + + + K+F    +P  
Sbjct: 194 RKVLERRAKYKPRSMLYGELGLAQRILRDFVGTEIDNIKVDSRQAFDKLKEFTDEFVPEV 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++      +V + S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDNIEYYSGQQPIFDLYDTESEIQRSLDRKVEMKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V + L+++L  DR 
Sbjct: 314 RNLDETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMISDEHQQRVLQTLEQALSYDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C G G +++  SV   +LR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPSCDGRGTVKTVESVCYEVLREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   IV+  S V   L+  +   + E E   G  + +        + F +
Sbjct: 434 AYDADRFIVYVSSAVGEALMGDESHALAELEVFIGKQVKIKPEPLYNQEQFDV 486


>gi|182412117|ref|YP_001817183.1| ribonuclease [Opitutus terrae PB90-1]
 gi|177839331|gb|ACB73583.1| ribonuclease, Rne/Rng family [Opitutus terrae PB90-1]
          Length = 525

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 241/577 (41%), Gaps = 72/577 (12%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           + LI  S   E RV +L D R+E+ + E E   ++ G IY  ++  ++  L+AAFVD G 
Sbjct: 12  RELIINSEPLEKRVALLVDGRLEKFEIERESDNRMVGGIYKGRIKNLDAGLKAAFVDIGY 71

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
            ++ FL + ++ P                   A +  E V  +        P D +++++
Sbjct: 72  TKNAFLHYWDMLP-----------------AAADSSVEVVRVNKKKNAPPRPVDPTVKDI 114

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +     +   +         V+       G           +Y I     +   +  +
Sbjct: 115 PQMYPPGTDIVIQ---------VTKGPIGTKGPRTTTNLSIPGRYLILTPFSDGCGISRK 165

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           I       +   +   L++                I R        +        L    
Sbjct: 166 IEDPAERKRLKQLINELTIP----------EGMGVIVRTAGEGKKARYFVRDLHILLKTW 215

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
               I       R    + +                           E +L++R +RD  
Sbjct: 216 QD--ITNKMQNERAPACLYQ---------------------------EPDLVERTVRDFL 246

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            +++  +++   + +   +  + ++    A  +  Y+D  PIF R  IE Q++   Q +V
Sbjct: 247 TEEVDRVLIDNREDFERTQQLVAMISKRSANKIAFYKDSIPIFERFNIERQIEQTGQRKV 306

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRS-TREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
            LPS G ++I++TEAL+SIDVN+G   +R    ++     NLEAA EIARQ+RLR+L GL
Sbjct: 307 PLPSGGEIVIDETEALISIDVNTGSHKSRGGDEKNVIYAVNLEAATEIARQIRLRNLGGL 366

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           +++DFIDM+E+++  +V +K+ + +  D+A+  +  IS  G+L+M+RQR + S+  +   
Sbjct: 367 VIIDFIDMKERRHRNAVYEKMVQEMSSDKAKNHILPISTLGILQMTRQRQQESLSSNLYT 426

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQ------YTAHNIIVHTHSDVVLYLLNQKR 536
            C YC+G G ++S +++++ + R +   + +         +++ V  H  ++  L ++  
Sbjct: 427 DCPYCRGRGIVKSATTMSVELQRKLSSVVRRLQLRNDGREYSLRVLVHPSILERLRSEDA 486

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
             +V  E  FGV +          + F I      + 
Sbjct: 487 ELLVRMEKLFGVKLAFRADPNYHLENFKIINALTGEE 523


>gi|134296485|ref|YP_001120220.1| ribonuclease G [Burkholderia vietnamiensis G4]
 gi|134139642|gb|ABO55385.1| RNAse G [Burkholderia vietnamiensis G4]
          Length = 489

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 117/406 (28%), Positives = 200/406 (49%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+       I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P        
Sbjct: 81  EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            +  +          +   +      G I+RT     +  E+  D  YL + W  +   A
Sbjct: 141 QKIESEAEREAVRARLTAVVPPDEKGGYIVRTIAEDASSEELAGDVAYLRKTWATIVAQA 200

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++ +L +R +RD      + I V   + Y+   +F     P+ +  +  Y
Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDQTTRIQVDSRETYQRLAEFAAEFTPAVSPKLHHY 260

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT 
Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   
Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+     + C  C+G G +++  +V   +LR +     Q+     
Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTARTVCYDVLREILRESRQFNPREF 440

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINLT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   +I HP
Sbjct: 60 IGLERAAFLHVADIWHP 76


>gi|313676684|ref|YP_004054680.1| ribonuclease, rne/rng family [Marivirga tractuosa DSM 4126]
 gi|312943382|gb|ADR22572.1| ribonuclease, Rne/Rng family [Marivirga tractuosa DSM 4126]
          Length = 517

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 157/564 (27%), Positives = 270/564 (47%), Gaps = 61/564 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+N+++I+++    +R+ +L D  + E+ ++++ ++   G+IYL  V +V   +Q     
Sbjct: 1   MSNELIINSTQ-NGSRIALLNDRNLIEIHYDNKEEQFSVGDIYLGNVRKV---MQ----- 51

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G N   F                                                D   
Sbjct: 52  -GLN-AAF-----------------------------------------------VDVGY 62

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+ A +       +  S++       +        S   +  +  +   I +V+   + +
Sbjct: 63  EKDAFLHYHDLGPKVNSLLKYTKFATTRNNTSYKLSKFKLEPEIDKLGKISQVLSKNKQV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE    KG  ++  LSLAGRY VL+P  + G +IS+KI+   +RK L  +   ++
Sbjct: 123 LVQVIKEPISTKGPRLSCELSLAGRYLVLVPF-ANGISISKKISTSEERKRLTRLISSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RT    +   E+  D   L+  W+N  +   ++     +  E       +R
Sbjct: 182 PE-NFGVIIRTVAEGKEVAELDTDLRNLLDTWENGVKKLKDAKPKDKIIGEVGRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +    I V  E+ ++E + +++ + PS  +I++ Y   + IF   GIE QL SL  
Sbjct: 241 DMMNESFDSIHVDDEETFKEIQTYIQKIDPSKEKILKLYTGRNKIFEHFGIERQLKSLFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V +   GY+II  TEAL  +DVNSG +S+ E   EDTAL TNLEAA+EIARQLRLRD+
Sbjct: 301 QSVNVKGGGYLIIEHTEALHVVDVNSGNKSSGEESQEDTALNTNLEAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM+   N + + KK+KE ++ DR++  V  +S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMKNPDNKKLLFKKMKEFMETDRSKHTVLPLSKFGLMQVTRQRVRPELNIV 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T + C  C G G I +   V+  I + ++  L +    ++ +  H  +  Y      +  
Sbjct: 421 TKESCPTCNGTGKITASILVSDKIEQDLDYLLTKQNEKSLSLAIHPFLYSYYTKGIISLR 480

Query: 540 VEYEARFGVSINVVIGIELADKLF 563
           V++  ++G  I ++    LA   +
Sbjct: 481 VKWFFKYGKWIKLIQDSSLALTEY 504


>gi|90412988|ref|ZP_01220986.1| putative ribonuclease G and E [Photobacterium profundum 3TCK]
 gi|90326003|gb|EAS42442.1| putative ribonuclease G and E [Photobacterium profundum 3TCK]
          Length = 489

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  KK  +   I E+++  Q ++VQ++K+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKKQFQVLDISELVRQGQDIVVQVIKDPLGTKGARLTTDVTLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA    ++ E+ +D  +L  LW
Sbjct: 136 ASHVGVSQRIESEEERERLKK--VVKYHCDDLGGFIIRTAAEGASEDELGQDAAFLKHLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    ++  I V    G+ + K+F +  +P  
Sbjct: 194 RKVIERRAKLKPKSMLYGELGLAQRILRDFVGTELDRIQVDSRLGFEKLKEFTEEFVPEV 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 NDKIDYYAGEQPIFDLFDTENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L  DR 
Sbjct: 314 RNLEETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMAIEDHQRRVLATLEQALSFDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPTCEGRGTVKTVESVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +   + E E   G  + V        + F +
Sbjct: 434 AYDADRFVVYVSPAVGDVLAGDEYHALAELEVFIGKQVKVKPEPLYIQEQFDV 486


>gi|288926401|ref|ZP_06420323.1| ribonuclease G [Prevotella buccae D17]
 gi|288336854|gb|EFC75218.1| ribonuclease G [Prevotella buccae D17]
          Length = 523

 Score =  261 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 124/570 (21%), Positives = 221/570 (38%), Gaps = 71/570 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D ++ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVVIDVRQ-DEISIALLEDKQLVEYQNEPRQASFTVGNIYMAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            G  R  FL +L++         Y++   SDR+ L   +   +     + D    G +T 
Sbjct: 60  VGYERDAFLHYLDLGSQFNSYQKYFKQVQSDRKKLYPFAKATR-----LPDLDKAGSITQ 114

Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
           P     E +  I      T+   +                         F  +Y +    
Sbjct: 115 PLQPGQEVMVQIVKEPISTKGPRLTGE--------------------LSFAGRYLVLIPF 154

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
            ++  +  +I   E   +   +   +                  I R +        L  
Sbjct: 155 GDKVSVSTKIKSGEERARLKQLIHSIKPKNC-----------GVIVRTVAEGKRVAELDA 203

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             + L       ++       R ++  +                     A  L+ +  + 
Sbjct: 204 ELKVLNQRWEDAIVKVQKTQKRPQLVFEET-----------------GRAVALLRDLFDP 246

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
               I       ++E+         E  D +KL                          Q
Sbjct: 247 TYENIYVNDEGVMNEVKHYVSLIAPEKADIVKLYTGKLPIFDNFNITK-----------Q 295

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + +     +      Y+II  TEAL  +DVNSG  TR+   E  AL  NL AA+E+ARQL
Sbjct: 296 IKASFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRQKGQEANALDVNLGAADELARQL 355

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRD+ G+IVVDFIDM   ++ + + +++ ++++KDRA+  +  +S FGL++++RQR+R 
Sbjct: 356 RLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVRP 415

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           ++  +  + C  C G G IRS       +   ++  + +       +H H  V  Y+   
Sbjct: 416 AMDVNVEETCPTCNGTGKIRSSILFTDQLEGKIDRLVNKIGISTFSLHVHPYVAAYINQG 475

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFY 564
             +   +++ ++G  I+VV   +LA   + 
Sbjct: 476 VFSLKRKWQLKYGFGISVVPSQKLAFLQYE 505


>gi|323496109|ref|ZP_08101169.1| ribonuclease G [Vibrio sinaloensis DSM 21326]
 gi|323318853|gb|EGA71804.1| ribonuclease G [Vibrio sinaloensis DSM 21326]
          Length = 489

 Score =  261 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K    G       G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEEERNRLKK--VVGHYCDENGGFIIRTAAEGALDKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++++I+V   + +   K+F    +P  
Sbjct: 194 LKVMERKAKYKTRSTLYGELGLSQRILRDFVGTELTKILVDSRQEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TEKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALDKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVADTLHGEESHALAELEVFIGKQVKIQAEPLYIQEQFDV 486


>gi|332664547|ref|YP_004447335.1| ribonuclease, Rne/Rng family [Haliscomenobacter hydrossis DSM 1100]
 gi|332333361|gb|AEE50462.1| ribonuclease, Rne/Rng family [Haliscomenobacter hydrossis DSM 1100]
          Length = 519

 Score =  261 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 136/565 (24%), Positives = 253/565 (44%), Gaps = 61/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   ++++++   E  + +L D ++ EL ++  +     G+I+L KV R+ P L AA   
Sbjct: 1   MEKDLIVNST-PTEVEIALLEDGKLVELHYQKTNNNFTVGDIFLGKVRRLMPGLNAA--- 56

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                                + + D+       L
Sbjct: 57  ----------FVDIG-------------------------HKKDAFLHYTDLGPKLRSLL 81

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +    +++    T      +   ++                    +   I +V+  R  +
Sbjct: 82  KFTQQVSSGQSNTFSLDNFAIEPEI-------------------NKNGKIDQVLNKRHNV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE    KG  ++  +++ GRY VL P T     +S+KI N  +RK LK +   ++
Sbjct: 123 LVQVLKEPISTKGPRLSCEITIPGRYLVLTPFTD-VVAVSKKIANNEERKRLKVLIESIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RTA   +   ++  +  Y++  W+ + +    +  P  +  E +     +R
Sbjct: 182 PK-NFGVIVRTAAEGKKVADLHEELSYMLEKWEEMYKSMYKTEGPAKLLSELDKTSSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL     + I+V+ ++ Y   K ++  + P    IV  Y+    IF   G+  Q+ +   
Sbjct: 241 DLLSDSFTRIVVNDKELYLNIKSYLGSIAPDQVNIVSHYKGTKSIFETHGVTRQIQASFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
              T+ S  Y++I  TEA+  IDVNSG        E+  ++ N+EA EEIARQLRLRD+ 
Sbjct: 301 KTATMSSGAYLVIESTEAMHVIDVNSGHKMSSTNAEEAVMKVNMEAVEEIARQLRLRDIG 360

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM   +  + + K++K+++KKDRA+  +  +S FGL++++RQR+R  V   T
Sbjct: 361 GIIIIDFIDMRNLEFRKDLVKEMKQAMKKDRAQHTILPLSKFGLMQITRQRVRPEVKIDT 420

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           T+VC  C+G G   +   +   I R +      +    I +  H  +  YL     ++I 
Sbjct: 421 TEVCPTCEGTGKTNASILMVTDIERDLAYIQSTHPKSRIKLVVHPYLQAYLTKGWFSSIQ 480

Query: 541 -EYEARFGVSINVVIGIELADKLFY 564
            ++  ++   +++          + 
Sbjct: 481 WKWFKQYFRRVDIKADGTYHLGKYR 505


>gi|54310354|ref|YP_131374.1| ribonuclease G [Photobacterium profundum SS9]
 gi|46914795|emb|CAG21572.1| putative ribonucleases G and E [Photobacterium profundum SS9]
          Length = 489

 Score =  261 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  KK  +   I E+++  Q ++VQ++K+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKKQFQVLDISELVRQGQDIVVQVIKDPLGTKGARLTTDVTLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA    ++ E+ +D  +L  LW
Sbjct: 136 ASHVGVSQRIESEEERERLKK--IVKYHCDDLGGFIIRTAAEGASEDELGQDAAFLKHLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E  +      ++Y E  L +R +RD    ++  I V    G+ + K+F +  +P  
Sbjct: 194 RKVIERRIKLKPKSMLYGELGLAQRILRDFVGTELDRIQVDSRLGFEKLKEFTEEFVPEV 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 NDKIDYYAGEQPIFDLFDTENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L  DR 
Sbjct: 314 RNLEETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMAIEDHQRRVLATLEQALSFDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPTCEGRGTVKTVESVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +   + E E   G  + V        + F +
Sbjct: 434 AYDADRFVVYVSPAVGDVLAGDEYHALAELEVFIGKQVKVKPEPLYIQEQFDV 486


>gi|83719989|ref|YP_441562.1| ribonuclease G [Burkholderia thailandensis E264]
 gi|83653814|gb|ABC37877.1| ribonuclease G [Burkholderia thailandensis E264]
          Length = 508

 Score =  261 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 197/396 (49%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  +     
Sbjct: 110 IEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAERE 169

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
                +   +      G I+RT     T  E+  D  YL + W  +           L+Y
Sbjct: 170 AVRARLTAVIPADEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTSLLY 229

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++ +L +R +RD    D + I V   + ++   DF     P+ +  +  Y    P+F   
Sbjct: 230 QDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLFDLY 289

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            IE ++       V L S GY++I+QTEA+ +IDVN+G        +DT  +TNLEAA  
Sbjct: 290 NIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHT 349

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V   S  GL+EM+R
Sbjct: 350 IARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVEMTR 409

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+     + C  C+G G +++  +V   ILR +     Q+      V     V+ 
Sbjct: 410 KRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQVID 469

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             L+++   +       G  +++ +   L+ + + I
Sbjct: 470 LFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 505



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 21 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 79

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 80 IGLERAAFLHVADI 93


>gi|285019220|ref|YP_003376931.1| ribonucleases g and e protein [Xanthomonas albilineans GPE PC73]
 gi|283474438|emb|CBA16939.1| putative ribonucleases g and e protein [Xanthomonas albilineans]
          Length = 496

 Score =  261 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 136/424 (32%), Positives = 228/424 (53%), Gaps = 2/424 (0%)

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
           NDVV       G + E  P        I E++++ Q ++VQ+VK+  G+KGA +TT +S+
Sbjct: 71  NDVVRPAPVCNGDTDETPPLPVSAAVPIMELLRDGQEIVVQVVKDPIGSKGARLTTQISI 130

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG-MGVILRTAGASRTKIEI 261
             RY VL+P  S+   +S +I +  +R  LK +   L    G  G I+RT    +    +
Sbjct: 131 PSRYLVLLP-QSRVIGVSARIEDEAERLRLKTMVADLAASHGGFGYIIRTNAEGQPAEAL 189

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             D  YL R+W+ V     +     ++YE+ +L  RA+RDL  KD+ ++ V     +   
Sbjct: 190 AEDIAYLSRVWNVVERRGRDGAPASIIYEDLSLPLRAVRDLIRKDVEKVKVDSHDTFERL 249

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F+   MP  A  +  Y    PIF   G+E ++      +V L S GY++I+QTEA+ +
Sbjct: 250 QAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIARALDKQVPLKSGGYLVIDQTEAMTT 309

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G    +  +E+T  +TNLEAA+ +ARQLRLR+L G+I++DFIDM + ++ R V +
Sbjct: 310 IDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMSDAEHRRQVLR 369

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+++L +D A+  V   S  GL+EM+R+R   S+    ++ C  C G G I++  +V  
Sbjct: 370 TLEKALSRDHAKTTVYDFSPLGLVEMTRKRTVESLERQLSEPCPQCGGRGSIKTAETVTY 429

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            I R +   + Q+ A  ++V   + VV  + +++ + + E E   G +I      +   +
Sbjct: 430 EIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVAEMEEFLGKTIRFQADEQYLQE 489

Query: 562 LFYI 565
            F +
Sbjct: 490 QFDV 493



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  +V RV P +QAAFV+
Sbjct: 1  MSQEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGQVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|315608691|ref|ZP_07883669.1| ribonuclease G [Prevotella buccae ATCC 33574]
 gi|315249541|gb|EFU29552.1| ribonuclease G [Prevotella buccae ATCC 33574]
          Length = 523

 Score =  261 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 124/570 (21%), Positives = 221/570 (38%), Gaps = 71/570 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D ++ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVVIDVRQ-DEISIALLEDKQLVEYQNEPRQASFTVGNIYMAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            G  R  FL +L++         Y++   SDR+ L   +   +     + D    G +T 
Sbjct: 60  VGYERDAFLHYLDLGSQFNSYQKYFKQVQSDRKKLYPFAKATR-----LPDLDKAGSITQ 114

Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
           P     E +  I      T+   +                         F  +Y +    
Sbjct: 115 PLQPGQEVMVQIVKEPISTKGPRLTGE--------------------LSFAGRYLVLIPF 154

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
            ++  +  +I   E   +   +   +                  I R +        L  
Sbjct: 155 GDKVSVSTKIKSGEERARLKQLIHSIKPKNC-----------GVIVRTVAEGKRVAELDA 203

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             + L       ++       R ++  +                     A  L+ +  + 
Sbjct: 204 ELKVLNQRWEDAIVKVQKTQKRPQLVFEET-----------------GRAVALLRDLFDP 246

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
               I       ++E+         E  D +KL                          Q
Sbjct: 247 TYENIYVNDEGVMNEVKHYVSLIAPEKADIVKLYTGKLPIFDNFNITK-----------Q 295

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + +     +      Y+II  TEAL  +DVNSG  TR+   E  AL  NL AA+E+ARQL
Sbjct: 296 IKASFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRQKGQEANALDVNLGAADELARQL 355

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRD+ G+IVVDFIDM   ++ + + +++ ++++KDRA+  +  +S FGL++++RQR+R 
Sbjct: 356 RLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVRP 415

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           ++  +  + C  C G G IRS       +   ++  + +       +H H  V  Y+   
Sbjct: 416 AMDVNVEETCPTCNGTGKIRSSILFTDQLEGKIDRLVNKIGISTFSLHVHPYVAAYINQG 475

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFY 564
             +   +++ ++G  I+VV   +LA   + 
Sbjct: 476 VFSLKRKWQLKYGFGISVVPSQKLAFLQYE 505


>gi|313202748|ref|YP_004041405.1| ribonuclease, rne/rng family [Paludibacter propionicigenes WB4]
 gi|312442064|gb|ADQ78420.1| ribonuclease, Rne/Rng family [Paludibacter propionicigenes WB4]
          Length = 524

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 132/565 (23%), Positives = 232/565 (41%), Gaps = 61/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D     E  + +L D R+ EL+ E   ++   GNIYL +V ++ P L AAFVD
Sbjct: 1   MNSELVVDVKTS-EISIALLEDKRLVELNQEGREEQFAVGNIYLGRVKKIMPGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL +L++  ++  +     QAL             +  ++             
Sbjct: 60  VGYDKDAFLHYLDLGSNFNTLTQFTTQALSDRKKTPAIQKTKLQPEIEKNGSINDILKPG 119

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +++         + +   ++A   +                     ++ +     ++  +
Sbjct: 120 QDILVQVTKEPISTKGPRLTAEISIA-------------------GRFLVLIPFADKVSV 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  EE   +   +   +   G              I R +        L    + L 
Sbjct: 161 SQKIKTEEERQRLKQLIQSIKPKGF-----------GVIVRTVAEEKKVAELDNELKILV 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 VI                                 +    L+ EE       IR
Sbjct: 210 KRWEEAVI-----------------------------KTQQTKGVSLILEELGRTVGIIR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+      I ++ +  + E +D++ L+ P    IV+ Y+D  PI+   GI  Q+ S   
Sbjct: 241 DLFSPSFKHIHINDQAVFAEVRDYVNLIAPDRKDIVKLYQDELPIYDSFGITKQIKSAFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V+  +  Y+II  TEAL  +DVNSG RS   +  ED AL  NL AA+EIARQLRLRD+
Sbjct: 301 KTVSFKNGAYLIIEHTEALHVVDVNSGNRSKAGNGQEDNALDVNLAAADEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM E +N + +  +++E++  DRA+  +  +S FGLL+M+RQR+R  +   
Sbjct: 361 GGIIVVDFIDMHETENRQKLFDRMRENMANDRAKHNILPLSKFGLLQMTRQRVRPVIHID 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C G G  +        +   ++  + +       +H H  V  Y+     +  
Sbjct: 421 IEETCPTCFGHGKTKPSILFTDQLESKIDYLVNKLLIKEFTLHIHPYVDAYISKGLFSMK 480

Query: 540 VEYEARFGVSINVVIGIELADKLFY 564
            +++ +FG    V+   +L    + 
Sbjct: 481 WQWKRKFGKGCKVIAAQKLGFLQYK 505


>gi|307256859|ref|ZP_07538637.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864593|gb|EFM96498.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 491

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 226/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPIGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  + E         ++Y E  L +R +RD     IS I +  +  Y + 
Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLVEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   +V  YL+N++  A+I E EA  G +I + +      
Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488


>gi|261253980|ref|ZP_05946553.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           orientalis CIP 102891]
 gi|260937371|gb|EEX93360.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           orientalis CIP 102891]
          Length = 489

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 D  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVADNEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K    G       G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEQERNRLKK--VVGHYCDENGGFIIRTAAEGADEKELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++++I+V     +   K+F    +P  
Sbjct: 194 SKVIERRSKYKTRATLYGELGLSQRILRDFVGTELNKILVDSRIEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLELYEGEKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++   V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMIADEHRNRVLTSLENALDKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR V     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVESVCYEILREVTRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVAETLQGDESHALAELEVFIGKQVKIQAEPLYIQEQFDV 486


>gi|307245670|ref|ZP_07527756.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306853372|gb|EFM85591.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 491

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 225/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q ++VQ+VK+    KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  + E         ++Y E  L +R +RD     IS I +  +  Y + 
Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   +V  YL+N++  A+I E EA  G +I + +      
Sbjct: 424 EILREIVRVHHLFKIEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488


>gi|303252271|ref|ZP_07338437.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247793|ref|ZP_07529830.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302648730|gb|EFL78920.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855736|gb|EFM87902.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 491

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 224/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q ++VQ+VK+    KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D  +L RLW  + E         ++Y E  L +R +RD     IS I +  +  Y + 
Sbjct: 184 HQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   +V  YL+N++  A+I E EA  G +I + +      
Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488


>gi|78485847|ref|YP_391772.1| ribonuclease [Thiomicrospira crunogena XCL-2]
 gi|78364133|gb|ABB42098.1| RNAse G [Thiomicrospira crunogena XCL-2]
          Length = 490

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 116/564 (20%), Positives = 208/564 (36%), Gaps = 80/564 (14%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             K+L++ +   ETRV  + +  ++E+  E  +K+ + GNIY+ KV RV P +QAAFVD 
Sbjct: 4   EEKVLVNVT-PSETRVAWVENGVLQEVWVERANKRGLVGNIYIGKVDRVLPGMQAAFVDI 62

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G  R  FL   +I           ++A+ KE    + D E +   +  G   +       
Sbjct: 63  GLERTAFLHVSDI----------CKRAIGKE---VEEDCEDITKFLHAGQKVMVQVVKDP 109

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
             +  A  +      S +         +   +        ++ +         K      
Sbjct: 110 ISSKGARLTMHVTIPSRMLVYMPDEKMIGVSQKIEDAGERERLREIIHSIPEAKE----- 164

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241
                                           S G  I R +    D   ++     L+ 
Sbjct: 165 --------------------------------SDGGYIVRTVAEGADFHEVRADLVYLQR 192

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
                VI   A   +    I  D    + +  ++    +  +          +++ +   
Sbjct: 193 LW--SVIQEKAKGVKKSALIYEDLPLYLHILRDIPIDRIEIIRVDSAETYKKMVEFSSAY 250

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361
           +        + SGE+   +       +  +  + V      + I  ++     +D     
Sbjct: 251 VMDLSDKLGLYSGERPIFDLYSIEDEIQQALEKRVDLKSGGYLIIDQTEAMTTID----- 305

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
                                 VN+G       +E+T  +TNLEA + IARQLRLR+L G
Sbjct: 306 ----------------------VNTGGFVGHKNLEETIYRTNLEATQAIARQLRLRNLGG 343

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +I++D IDM++K++  SV   L+  L+KDR +  +  ISN GL+EM+R+R R S+     
Sbjct: 344 IIILDLIDMDDKEHKASVYSALQRELQKDRVKTSITEISNLGLVEMTRKRTRESLERILC 403

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541
           + C  C G G +++  ++A  + R +      + A    V     VV Y+L++    + E
Sbjct: 404 EPCPVCHGRGTVKTPETIAFEVFREITRMAKSFDAEYYRVIASEPVVSYILDEASGNVAE 463

Query: 542 YEARFGVSINVVIGIELADKLFYI 565
            E     SI          + F +
Sbjct: 464 LETFLNKSIRFQAEGGYFIEQFDV 487


>gi|238921343|ref|YP_002934858.1| ribonuclease G [Edwardsiella ictaluri 93-146]
 gi|238870912|gb|ACR70623.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 489

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R   +    +   +        A  G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRI--DSEAERERLKAIVAPHCDALGGFIIRTAAEGIDDEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    ++Y E  L  R +RD     ++ I V     Y   +DF +  MP  
Sbjct: 194 IKVMERKRRNKTKCMLYGELALAPRVLRDFAGAPLNRIRVDSRLTYDLLQDFTREYMPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    +  V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 THCLELYSGKQPIFDMYDVENEIQRALERRVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L ++L KDRA
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSCEDHRRRVLHSLDQALGKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   +LR +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCGECPTCHGRGTVKTVETVCYEVLREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHALAEVELFVGKQVKVQIEPLYSQEQFDV 486


>gi|120555635|ref|YP_959986.1| ribonuclease [Marinobacter aquaeolei VT8]
 gi|120325484|gb|ABM19799.1| RNAse G [Marinobacter aquaeolei VT8]
          Length = 493

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 234/486 (48%), Gaps = 8/486 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  +     G++       +      A      E  + I A
Sbjct: 11  PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVDIGLERAAFIHA 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +           +    I+ +++  Q L+VQ+ K+  G KGA +TT LS
Sbjct: 71  SDVVSGQTSGDE------PSDAPRTVPDIRTLLREGQSLVVQVTKDPIGTKGARLTTQLS 124

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKI 259
           +  RY V MP         R   +    +  +L E           G I+RTA  + +  
Sbjct: 125 IPSRYLVFMPGVCHVGISQRIEDDNERARLKSLIEEGAAEHDDVQGGYIIRTAAEAASAE 184

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           ++  D  YL RL  +++E    + AP +VY++  L  R IRDL      ++ +   + Y+
Sbjct: 185 DLIADMTYLHRLSQSIQERIAKAPAPSVVYQDLPLFIRTIRDLIRPQTEKVRIDSRESYQ 244

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
              +F+K  +  +A  V  Y    PIF    +E ++      +V L S GYVII+QTEA+
Sbjct: 245 RVMEFVKEFVTEFADKVEYYPGERPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAM 304

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +ID+N+G       +E+T  +TNLEAA  I+RQLRLR+L G+I++DFIDME+ ++ R V
Sbjct: 305 TTIDINTGAFVGHRNLEETIFKTNLEAARAISRQLRLRNLGGIIIIDFIDMEDPEHQRQV 364

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            + L++ L++D A+ ++  +S  GL+EM+R+R   S+ +   + C  C G G++++  +V
Sbjct: 365 HRMLEKMLERDHAKTKITGVSELGLVEMTRKRTTESLGQVLCEPCPICDGRGFLKTAETV 424

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              I R +      Y A N +V     VV  LL+++   + + E     +I   +    +
Sbjct: 425 CYEIFREILRVNRAYEAENYLVMASQKVVDRLLDEESDNVADLETFISKTIRFQVEPFYS 484

Query: 560 DKLFYI 565
            + + +
Sbjct: 485 QEQYDV 490



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV ++ +  ++E   E   +K I GNIY  KV RV P ++AAFVD
Sbjct: 1  MSEEILINVT-PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R  F+   ++  
Sbjct: 60 IGLERAAFIHASDVVS 75


>gi|238028190|ref|YP_002912421.1| ribonucleases G and E [Burkholderia glumae BGR1]
 gi|237877384|gb|ACR29717.1| Ribonucleases G and E [Burkholderia glumae BGR1]
          Length = 489

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 120/409 (29%), Positives = 199/409 (48%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
           P   P        I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P     
Sbjct: 78  PPGDPHASVPHPPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHI 137

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
               +  +          +   +      G I+RT     T  E+  D  YL + W  + 
Sbjct: 138 GISQKIESEAEREAVRARLTAVIPPEEKGGYIVRTIAEDATAEELGADVAYLRKTWTTIV 197

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
             A    A  L+Y++ +L +R +RD    D S+I V   + +    +F     P+ +  +
Sbjct: 198 AQAQRLPATSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFARLSNFATEFTPAVSARL 257

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             Y    P+F    IE ++       V L S GY++I+QTEA+ +IDVN+G        +
Sbjct: 258 HHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFD 317

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           DT  +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK++L +DR RV V
Sbjct: 318 DTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHREAVLGELKKALSRDRTRVTV 377

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
              S  GL+EM+R+R R S+     + C  C G G +++  +V   +LR +     Q+  
Sbjct: 378 NGFSQLGLVEMTRKRTRESLAHVLCEPCPVCMGKGQVKTPRTVCYDVLREILRESRQFNP 437

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               V     V+   L+++   +       G  +++ +   L+ + + I
Sbjct: 438 REFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E    +   GNIYL KV RV P +Q+AF+D
Sbjct: 1  MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|121998916|ref|YP_001003703.1| ribonuclease [Halorhodospira halophila SL1]
 gi|121590321|gb|ABM62901.1| RNAse G [Halorhodospira halophila SL1]
          Length = 482

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 224/406 (55%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                     I  +++ +Q LLVQ++K+  GNKGA +TT +++  RY VL P++      
Sbjct: 74  QRDSGGPPPPIDRLLREQQALLVQVIKDPIGNKGARLTTQITVPSRYLVLTPHSCGVGVS 133

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           +R        +               G+I RTA    +   ++ D ++L+RLW+++R  A
Sbjct: 134 ARIEEEAERERLRGVAQGFDAERGEAGLIFRTAAEGASGEALRADHDFLVRLWESIRRRA 193

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             +    LV+E+  L+ RA+RDL  +D+  + V   +GY    DF K L+P  A  V  Y
Sbjct: 194 GEAQPGTLVHEDLPLLLRALRDLATRDLERVRVDSREGYLRLGDFCKDLLPHIAERVELY 253

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               PIF   G+E +++      V L S G++II+QTEA+ +IDVN+G       +++T 
Sbjct: 254 AGERPIFDLYGVEEEIERALSRRVDLKSGGHLIIDQTEAMTTIDVNTGGFVGNRNVDETI 313

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA+ IARQLRLR+L G+I+VDFIDM + ++ R V + L+++L++D A+ Q+GA+
Sbjct: 314 FKTNLEAAQAIARQLRLRNLGGIIIVDFIDMTDAEHRRQVLRALEKALERDHAKTQIGAV 373

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S+ GL+EM+R+R R S+ + T + C  C+G G ++S  +V   I R +   + Q+ +  +
Sbjct: 374 SSLGLVEMTRKRTRESLEQVTCEPCPTCRGRGTVKSAETVVYEIFREILREVRQFESQRV 433

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           IV     VV  LL+++  ++ + E      I + +        + +
Sbjct: 434 IVLAAPSVVEVLLDEESTSLAQLEEFIERPIELQVESLYVADQYDV 479



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV ++ +  ++E+  E   ++ + GNIYL +V RV P +QAAFVD
Sbjct: 1  MSQEILINLT-PRETRVALVENGVLQEVHLERARRRGLVGNIYLGQVRRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  R  FL   ++  D
Sbjct: 60 AGLERTAFLHVSDLQRD 76


>gi|147677164|ref|YP_001211379.1| ribonucleases G and E [Pelotomaculum thermopropionicum SI]
 gi|146273261|dbj|BAF59010.1| ribonucleases G and E [Pelotomaculum thermopropionicum SI]
          Length = 561

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 221/425 (52%), Gaps = 3/425 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I +++K  Q +LVQIVKE  G KG  VTT+++L GRY VLMP          +      
Sbjct: 90  NICDILKQGQEVLVQIVKEPIGTKGPRVTTHITLPGRYLVLMPTVDYIGI--SRRIESER 147

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
            +   +       P GMGVI+RT      + E ++D   L +LW  V   A +   P+LV
Sbjct: 148 ERERLKELASRVKPEGMGVIVRTVAEGVDEEEFRQDVGLLTKLWRKVLSRAAHGPVPNLV 207

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           + +  L++R +RD++ +D+  +I+     Y +  D + +  P   ++    ++   IF  
Sbjct: 208 HRDLELVQRILRDVFTEDVDRLILDSRYEYEKVLDLLDITGPRL-KLKVFLDERDSIFEE 266

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            GIE +++   + +V L S GY++I+Q EAL ++DVN+G+      +EDT L+TNLEAA 
Sbjct: 267 YGIEQEIEKALKRKVWLKSGGYLVIDQAEALTAVDVNTGKYVGTTNLEDTVLKTNLEAAR 326

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           EIARQLRLR++ G+++VDFIDM  +++ + V + L+E +KKD+ +  +  I+  GL+EM+
Sbjct: 327 EIARQLRLRNIGGIVIVDFIDMSREEHRQEVVRTLEEEIKKDKTKTNILGITQLGLVEMT 386

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+++R S+ E   K C YC G G + S+ ++ +S    +     Q TA  I+V  +  V 
Sbjct: 387 RKKVRPSLSEVIQKPCPYCDGKGRVLSEETLGISFKNQIYNMARQTTAKTILVEANPVVA 446

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
             L+    A + + E + G S+ +        +   I      + +      V       
Sbjct: 447 ARLIGSGGANLRDLENKTGKSLYIRGVASHHIESIVIRPLHDNEQVQARTLPVKPGEVLE 506

Query: 589 SYDKN 593
              + 
Sbjct: 507 VKVEE 511



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++++    EETRV VL D    E+  E    +++ GNI+  +V  V P +QAAFV+
Sbjct: 1  MLKEIVVNVGE-EETRVAVLEDRVPVEIYIERSVNQRLVGNIFKGRVENVLPGMQAAFVN 59

Query: 61 YGGNRHGFLPFLE 73
           G  ++ FL   +
Sbjct: 60 IGLEKNAFLYVED 72


>gi|83589420|ref|YP_429429.1| ribonuclease G [Moorella thermoacetica ATCC 39073]
 gi|83572334|gb|ABC18886.1| RNAse G [Moorella thermoacetica ATCC 39073]
          Length = 562

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 141/504 (27%), Positives = 241/504 (47%), Gaps = 11/504 (2%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           ++ L+++   A+  + A+ +D    ++ +  D +   V  I           + +A  D+
Sbjct: 3   KEILIQDD--AEETAVALLEDGRLMEIYLERDSNQRLVGNIYKGRVANVLPGMQAAFVDI 60

Query: 146 VSN------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
                    V+D  G    +     + +  I +V++  Q +LVQ+ KE +G KGA VTT 
Sbjct: 61  GLEKNAFLFVDDTSGIEALEGEIVSRSRRRISDVVREGQEILVQVAKEPQGTKGARVTTQ 120

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           ++L GRY VLMP  +      R   +  + +   +       P  MG+I+RT  A     
Sbjct: 121 ITLPGRYLVLMPTVNYIGVSRRI--SHEEERERLKNLARAVKPRRMGLIVRTVAAGAGLE 178

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           E++ D + L R W  +R+ A  S AP LV+ +  L  R +RDLY  D++ ++V+    Y 
Sbjct: 179 ELQADCQNLTRTWKRIRQAARRSKAPRLVHHDVELSLRILRDLYADDVNRLVVNSPATYA 238

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           +  + +    P+  R      +   +F   G++ Q++   + +V L   GY+II+Q EAL
Sbjct: 239 KVLEVLAGRAPNL-RQRVILRENADLFAVYGVQNQIEQALKRKVWLRCGGYLIIDQMEAL 297

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +IDVN+G+    H + +T L TNLEAA E+ARQLRLR++ G+IVVDFIDM+   +   V
Sbjct: 298 TAIDVNTGKYVGRHNLAETVLTTNLEAAVEVARQLRLRNIGGIIVVDFIDMDNPLHREQV 357

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            K L+  L KD+ + Q+   +  GLLEM+R++ +  +     + C YC G G + S  +V
Sbjct: 358 IKVLEGELTKDKTKTQILGFTRLGLLEMTRKKAQQRLESVLQQDCPYCHGTGKVLSAETV 417

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
            L   + + +      A  I+   +  V   L+    A +   E R G  + +       
Sbjct: 418 TLKARKEILQLAAVSKARAILAEANPAVAAPLIGVGGANLRTLERRAGKKLIIKGNENFH 477

Query: 560 DKLFYIEKGSPVQALVNTGHKVGS 583
            +   + +    + + N    V  
Sbjct: 478 LEEVRLRELFDREEIANLSTPVKV 501



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI     EET V +L D R+ E+  E +  +++ GNIY  +V  V P +QAAFVD
Sbjct: 1  MLKEILI-QDDAEETAVALLEDGRLMEIYLERDSNQRLVGNIYKGRVANVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G  ++ FL   +
Sbjct: 60 IGLEKNAFLFVDD 72


>gi|91776464|ref|YP_546220.1| ribonuclease G [Methylobacillus flagellatus KT]
 gi|91710451|gb|ABE50379.1| RNAse G [Methylobacillus flagellatus KT]
          Length = 483

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 125/403 (31%), Positives = 213/403 (52%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
             +++  IQEV+   Q ++VQ++KE  G KGA +TT +S+AGR+ V +P         R 
Sbjct: 78  SPEKEKAIQEVLHEGQPIMVQVIKEPIGTKGARLTTQISIAGRFLVYLPQQQHIGVSQRI 137

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
                     + + R L      G I+RT   + T  E+  D +YL ++W N++  +  +
Sbjct: 138 EDEAERELLRERLLRLLPEKREGGYIIRTMSEAATDEELLADIDYLQKVWSNIQAASHGA 197

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
               LV+++ +L  R +RD+   D   I+V   + Y++  DF         + +  Y+  
Sbjct: 198 ADRSLVFQDLDLPMRVLRDVVNDDTERILVDSRETYQKLLDFASHYAVGAVKRIELYQGA 257

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
            P+F    +E +++     +V L S GY+I +QTEAL ++DVN+G       + DT  +T
Sbjct: 258 RPLFDMYNVEHEINKAMSRKVELKSGGYLIFDQTEALTTVDVNTGGFVTGRSLSDTIFKT 317

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAA+ IARQLR+R+L G+I++DFIDM+E++   +V  +LK+++ KDRAR  V   S  
Sbjct: 318 NLEAAQCIARQLRVRNLGGIIIIDFIDMDEEEQQSAVLAELKKNVAKDRARTGVNGFSTL 377

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
           GL+EM+R+R R S+     + C  CKG G +++  ++   I R +     Q+TA    + 
Sbjct: 378 GLVEMTRKRTRESLAHLLCEPCPSCKGRGEVKTAQTICYEIFRELLRNAKQFTAREFRIL 437

Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               V+  LL+++  ++       G  I++      A + + I
Sbjct: 438 AAPKVIELLLDEESQSLANLSDFIGKPISLQAETHYAQETYDI 480



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +  +ETRV ++    ++EL  E      + GNIY  KV RV P +Q+AFV+
Sbjct: 1  MSEEILINVT-PQETRVAIVEQGVLQELHVERATSLGLVGNIYRGKVCRVLPGMQSAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLQRAAFLHVADI 73


>gi|299768911|ref|YP_003730937.1| ribonuclease G, endoribonuclease G [Acinetobacter sp. DR1]
 gi|298698999|gb|ADI89564.1| ribonuclease G, endoribonuclease G [Acinetobacter sp. DR1]
          Length = 469

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/412 (29%), Positives = 214/412 (51%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   Q L VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 56  NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 115

Query: 217 ETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     +  N+ E  +      G  VI+RTA     + EI +D  YL +LW+ 
Sbjct: 116 GVSQRIESEEERERLRNIIEGIQSEHNLPG-SVIVRTAAEGVDEAEIAQDMCYLSKLWEY 174

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL   + ++I V   + + +  +F++  +P+   
Sbjct: 175 IQRKQIDVAVPSLIFEELPLPQRIIRDLASDETAKIYVDSREIHAKLLEFVEEFVPNMQS 234

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 235 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 294

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G++++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 295 LEDTVFKTNMEATQVIARQLRLRNLGGILIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 354

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 355 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 414

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 415 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 466



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          + ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD G +R  FL   ++
Sbjct: 1  MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDM 58


>gi|269104080|ref|ZP_06156777.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163978|gb|EEZ42474.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 489

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 131/484 (27%), Positives = 217/484 (44%), Gaps = 8/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++ N+ +   E  +     G++       +      A      ++ + + A
Sbjct: 11  PSETRVAMIEDGNLQEIHIERESKRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHA 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +            +   I E+++  Q L+VQ+VK+  G KGA +TT ++
Sbjct: 71  SDIVPHTECVAENEKQ------QFQVRDISELVRQGQDLVVQVVKDPLGTKGARLTTDVT 124

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +  K            G I+RTA    +  E+
Sbjct: 125 LPSRYLVFMPGASHVGVSQRIESEHERERLKK--IVMPHCDDLGGFIIRTAAEGASDEEL 182

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D  +L  LW  V E         ++Y E  L +R +RD    +I  I V     + + 
Sbjct: 183 SQDAAFLKHLWRKVIERRAKYKTRSMLYGELGLAQRILRDFVGTEIHNIKVDSRLAFDKL 242

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F    +P     +  Y    PIF     E ++      +V L S GY+II+QTEA+ +
Sbjct: 243 KEFTDEFVPEVTENIEYYSGDQPIFDLYDTENEIQRSLDRKVELKSGGYLIIDQTEAMTT 302

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +D+N+G       +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V +
Sbjct: 303 VDINTGAFVGRRNLEETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMAGEDHQRRVLQ 362

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+++L  DR +  +   +  GL+EM+R+R R S+       C  CKG G +++  SV  
Sbjct: 363 ALEQALSGDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPTCKGRGTVKTVESVCY 422

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR V      Y A   +V+    V   L   +   + E E   G  + +        +
Sbjct: 423 EILREVTRVNRAYDADRFVVYVSPVVADALSGDEYHALAELEVFIGKEVKIKAEPLYIQE 482

Query: 562 LFYI 565
            F +
Sbjct: 483 QFDV 486


>gi|92114358|ref|YP_574286.1| ribonuclease G [Chromohalobacter salexigens DSM 3043]
 gi|91797448|gb|ABE59587.1| RNAse G [Chromohalobacter salexigens DSM 3043]
          Length = 487

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 217/409 (53%), Gaps = 3/409 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                     I  +++  Q L+VQ+ K+  G+KGA +TT+LS+  RY V MP++      
Sbjct: 76  PNASVDEHVTITHLLQEGQPLVVQVTKDPIGSKGARLTTHLSVPSRYLVYMPDSPHTGVS 135

Query: 220 SRKITNPVDRKNL---KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
            R        +     +     +   A  GVI+RTA     + E+  D  +L+RLW  V 
Sbjct: 136 QRIEDENERERLKTLIEAAHADMREGAPGGVIIRTAAEGVGQEELTADMHFLLRLWRKVE 195

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           E   ++V P L+Y++  L  R +RD+   ++  + +   + Y + K+F K  MP     +
Sbjct: 196 ERQHSAVPPALLYDDLPLFIRTLRDVMRDEVERVRIDSRENYVKLKEFAKEFMPDVESCI 255

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             Y    P+F    +E ++      +V L S GY++I+QTEA+ +IDVN+G       +E
Sbjct: 256 EYYPGERPLFDLYSVEDEIQKALGRKVQLKSGGYLVIDQTEAMTTIDVNTGGYVGHRNLE 315

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T  +TNLEAA  IARQLRLR+L G+I++DFIDME+ ++ R V + L+++L++D A+ ++
Sbjct: 316 ETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDPEHQRQVLRVLEKALERDHAKNKL 375

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             ++  GL++++R+R R S+ ++  + C  C+G G +++  +V   I R +      Y+ 
Sbjct: 376 TGVTELGLVQVTRKRTRESLEQTLCEPCLTCQGRGTLKTPETVCYEIFREILREERAYSP 435

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              +V     VV  LL+++   + + E+  G +I   +    + + + I
Sbjct: 436 ETYMVLASQAVVDRLLDEESTAVADLESFIGKTIRFQVEAHYSQEQYDI 484



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV V+ +  ++E   E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSGEVLINLT-PMETRVAVVENGVLQEAFIERSRRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R  F+   E+  
Sbjct: 60 IGLERAAFIHVNEVVS 75


>gi|77919635|ref|YP_357450.1| ribonuclease E [Pelobacter carbinolicus DSM 2380]
 gi|77545718|gb|ABA89280.1| RNAse E [Pelobacter carbinolicus DSM 2380]
          Length = 926

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 213/635 (33%), Positives = 340/635 (53%), Gaps = 12/635 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A++++  +++ D E    + T G++       +E     A     +E    +  
Sbjct: 12  PEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVDYGSERLGFLQI 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
                +  ++ +G        +  ++  I ++++  Q +LVQIVKEERG KGAA+TTYLS
Sbjct: 72  GEIHPAFFKEAEG------RVEAGKRPRINDILRRGQEILVQIVKEERGTKGAALTTYLS 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP+ S  + ISRKI    DRK L+E+   LE+P  MG I+RTAG+++ + ++
Sbjct: 126 LPGRYMVLMPD-SDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQKRTDL 184

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           KRD +YL+RL++ ++ L+ ++ AP L+Y+E NL+ R+IRD +  D+ E++V   K   EA
Sbjct: 185 KRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKVSTEA 244

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           +DF + +MP YA +V+ +++  PIF R  IE Q++S+ + +V LPS G ++I+ TEALV+
Sbjct: 245 RDFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTEALVA 304

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVNSG+   E  +E TA +TNLEAA E ARQLRLRDL GL+V+DFIDM ++K+ R +EK
Sbjct: 305 IDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIRDIEK 364

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LKE++K D+ARV +G IS FGLLEMSRQRI+S++  ++ +VC +C G+G I++  + +L
Sbjct: 365 TLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIEAQSL 424

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
             LR +   L +     +      DV  YLLN KR  ++  E +  VSI++    +  + 
Sbjct: 425 GFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPDYMNG 484

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              I+     +        + +       +   +    D    P  +       + +  +
Sbjct: 485 QGEIDFHKREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRKSSAA 544

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              +           ++  AT   DA     +++   V  +  +   EP         E 
Sbjct: 545 TPVSEPSTLTTESEEQQPAAT--QDAAESQPMATDTEVAREVSEKTAEPVSTEATEPAEK 602

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            A   +        P       S +    P  KKT
Sbjct: 603 TAEPAS---AAEEQPQKPSRPRSRSGRRKPATKKT 634



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 92/722 (12%), Positives = 199/722 (27%), Gaps = 33/722 (4%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  KMLI+A+H EE RV ++ D  + ELD E   K+Q KGNIY A V RVE  LQAAFVD
Sbjct: 1   MTKKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTHGDVTIPNDH 118
           YG  R GFL   EIHP +++      +A    + ++I +   E +   V     T     
Sbjct: 61  YGSERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAAL 120

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           +     P        + ++   +      +         + +    +  Y ++     ++
Sbjct: 121 TTYLSLPGRYMVLMPDSDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQK 180

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
              ++   +        + +        S++   ++      R   +    + L + A+ 
Sbjct: 181 RTDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKV 240

Query: 239 LEVPAGMGV-----ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
                                 + +  I   ++   ++    +   +      +V +   
Sbjct: 241 STEARDFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE 300

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
            +     +       + + +                     +                  
Sbjct: 301 ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR 360

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            ++   +  +                    V  GR ++   +E +  +     A      
Sbjct: 361 DIEKTLKEAMKTDK--------------ARVTIGRISQFGLLEMSRQRIKSALAAASFEV 406

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
               + +G I         +  +    +++   L K R   +V A     +        R
Sbjct: 407 CPHCNGSGKIKT------IEAQSLGFLRRIHTGLAKGRI-GRVEATVPLDVASYLLNNKR 459

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
             ++    K          I+                  +           S V+    N
Sbjct: 460 VELMAIEQKNDVSIH----IKGCPDYMNGQGEIDFHKREKEETQATAYIEASQVMSETNN 515

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            ++ +  + E +             +     + + S +           +   A S    
Sbjct: 516 AQQDSTTDTEEKPAKRRRRPRRRRKSSAATPVSEPSTLTTESEEQQPAATQDAAESQPMA 575

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
            +     E      +  S E  +    + E      ++ ++  R R  +           
Sbjct: 576 TDTEVAREVSEKTAEPVSTEATEPAEKTAEPASAAEEQPQKPSRPRSRSGRRKPATKKTE 635

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME-SSNSSSDPI 712
           +  +   +   +   E                          P + PE +  +   + P 
Sbjct: 636 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 695

Query: 713 VK 714
            K
Sbjct: 696 AK 697



 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 5/150 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQD---EALLPIPKSESLEDIQDNIVSEESTG 626
             +       +  ++SQ  + D  +     +   E +       + +  +    +EE   
Sbjct: 556 ESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPAEKTAEPASAAEEQPQ 615

Query: 627 VIRKRRRRRRRRRPATDHHD-AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + R R  RR+PAT   +        +  +   +   +   E                
Sbjct: 616 KPSRPRSRSGRRKPATKKTEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 675

Query: 686 FTENYDVSIPPVSTPEME-SSNSSSDPIVK 714
                     P + PE +  +   + P  K
Sbjct: 676 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAK 705



 Score = 39.6 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/157 (8%), Positives = 25/157 (15%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K                    P             +           +   +    E+  
Sbjct: 753 KPEAKPKAKPKVESEAQSEAMPEAKPKTTRRAPSRSRTKTKTKTETAESNTSATGTETDT 812

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              K  +    + PA            +       D      +                 
Sbjct: 813 PSEKDEKPAETKPPAKRARARRTTKPTAKTATQASDDVSPAEKDETAKATETAAPKRRTR 872

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                             S S+++   KK    + RK
Sbjct: 873 ARKTTAKTVKSGDDASSVSASNAEEAEKKKPTRRPRK 909



 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 3/160 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E  +  +A+     K    + + S  K        E+      +E+    + +    E
Sbjct: 763 KVESEAQSEAMPEAKPKTTRRAPSRSRTKTKTKTETAESNTSATGTETDTPSEKDEKPAE 822

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +      +R R RR    T         DVS  +            P   T         
Sbjct: 823 TKPPA--KRARARRTTKPTAKTATQASDDVSPAEKDETAKATETAAPKRRTR-ARKTTAK 879

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              + +   S+   +  E E    +  P     +  +  K
Sbjct: 880 TVKSGDDASSVSASNAEEAEKKKPTRRPRKPAAKAVEESK 919


>gi|332528328|ref|ZP_08404328.1| ribonuclease G [Hylemonella gracilis ATCC 19624]
 gi|332042199|gb|EGI78525.1| ribonuclease G [Hylemonella gracilis ATCC 19624]
          Length = 497

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/402 (30%), Positives = 203/402 (50%), Gaps = 3/402 (0%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI--- 223
              I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +     
Sbjct: 93  PQPIEKQVFEGQSLMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDDHIGVSQKIPLAE 152

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            + + ++    +++ +      G ILRT     T  E+  D  YL + W  ++E +    
Sbjct: 153 RDALRQRLQNIVSQAVGEKKSGGFILRTNAEEATDAELAEDIAYLRKTWVRIKEASQRLA 212

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           A  L++ + NL++R +RDL  +    I V   + +   + F +  MP  A  +  Y+   
Sbjct: 213 AKSLLHLDLNLLQRVLRDLVGERTGSIKVDSREQFEALRAFGQEFMPGAATKLELYKGER 272

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           PIF   GI+ ++       V L S GY+I++QTEAL +IDVN+G        +DT  +TN
Sbjct: 273 PIFDLYGIDEEVARALGRRVDLKSGGYLIVDQTEALTTIDVNTGGFVGARNFDDTIFKTN 332

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAA  IARQLRLR+L G+I+ DFIDM  + +  +V  + ++ L +DR +  +G  S  G
Sbjct: 333 LEAAGAIARQLRLRNLGGIIIADFIDMTREDHREAVLAEFRKQLARDRVKTMLGGFSQLG 392

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           LLEM+R+R R S+     + C +C+G G +++  SVA  ILR +     Q+      V  
Sbjct: 393 LLEMTRKRTRESLAHMLCEPCPHCQGTGQVKTTRSVAYEILREILREARQFNPREFRVLA 452

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              V+  LL+++   +       G  I++     +    + I
Sbjct: 453 APQVIELLLDEESQHLAGLSDFIGKPISLQSETSMWQGQYDI 494


>gi|260775580|ref|ZP_05884477.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608761|gb|EEX34926.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 489

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K    G       G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEEERNRLKK--VVGHYCDEDGGFIIRTAAEGADDTELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++++I+V     +   K+F    +P  
Sbjct: 194 SKVNERRSKYKTRSTLYGELGLSQRILRDFVGTELTKILVDSRLEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMLSEEHRKRVLTSLEAALDKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVESVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L   +   + E E   G  + V        + F +
Sbjct: 434 AYEADKFVVYASPSVADALQGDESHALAELEVFIGKQVKVQAEPLYIQEQFDV 486


>gi|262172489|ref|ZP_06040167.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           mimicus MB-451]
 gi|261893565|gb|EEY39551.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           mimicus MB-451]
          Length = 489

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 208/413 (50%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S    +S++I +  +R+ LK +        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVG-VSQRIESEEERERLKAVVNHYCDEHG-GFIIRTAAEGANEKELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    ++++I++   + +   K+F    +P  
Sbjct: 194 SKVIERRGKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TTKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALVKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVESVCFEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|33152666|ref|NP_874019.1| ribonuclease G [Haemophilus ducreyi 35000HP]
 gi|33148890|gb|AAP96408.1| ribonuclease G [Haemophilus ducreyi 35000HP]
          Length = 490

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 229/485 (47%), Gaps = 10/485 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+++  + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVEDGLLKELHIEREAKRGLVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDESEKKQFV------VKDIAELVREGQDIIVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEQERNR--LKALVEPHCDELGGFIIRTAAEDVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  + E      A  ++Y E  L +R +RD     IS + +  ++   + 
Sbjct: 184 RQDSIFLKRLWRKILERKAKYPARSMLYGELALAQRILRDFVGTQISAVRIDSKQTLEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            DF+   MP     V  Y   H +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 TDFLNEFMPELTESVTLYNGSHTLFD-YGVEEAIQKALDKRVNLKSGGYLIIEQTEAMTT 302

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       + DT   TN+EA + IA QL+LR+L G+I++DFIDM+++++   V +
Sbjct: 303 IDINTGAFVGHRNLADTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQQEEHRERVLE 362

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+LK DR +  V   +  GL+EM+R+R R S+       C  C G G +++  +V  
Sbjct: 363 VLREALKNDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPVCNGRGTVKTIETVCY 422

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      Y++  I V+   +V  YL+N++  A++ E EA  G  + + +      
Sbjct: 423 EILREIVRVHYLYSSEKIRVYASKEVAEYLINEETHASLAELEAFIGKKVEIKLEPYYHQ 482

Query: 561 KLFYI 565
             F +
Sbjct: 483 DQFDV 487



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 1  MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M + ++L++ +   ETRV ++ D  ++EL  E E K+ + GNIY  +VTRV P +Q+AFV
Sbjct: 1  MTSAELLMNVT-PSETRVALVEDGLLKELHIEREAKRGLVGNIYKGRVTRVLPGMQSAFV 59

Query: 60 DYGGNRHGFLPFLEIHP 76
          D G  +  FL   +I  
Sbjct: 60 DIGLEKAAFLHASDIVS 76


>gi|258623373|ref|ZP_05718377.1| cytoplasmic axial filament protein [Vibrio mimicus VM573]
 gi|258627019|ref|ZP_05721817.1| cytoplasmic axial filament protein [Vibrio mimicus VM603]
 gi|258580693|gb|EEW05644.1| cytoplasmic axial filament protein [Vibrio mimicus VM603]
 gi|258584339|gb|EEW09084.1| cytoplasmic axial filament protein [Vibrio mimicus VM573]
          Length = 489

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 208/413 (50%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S    +S++I +  +R+ LK +        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVG-VSQRIESEEERERLKAVVNHYCDEHG-GFIIRTAAEGANEKELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    ++++I++   + +   K+F    +P  
Sbjct: 194 SKVIERRGKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALVKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVESVCFEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 486


>gi|332799479|ref|YP_004460978.1| ribonuclease, Rne/Rng family [Tepidanaerobacter sp. Re1]
 gi|332697214|gb|AEE91671.1| ribonuclease, Rne/Rng family [Tepidanaerobacter sp. Re1]
          Length = 563

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 144/594 (24%), Positives = 241/594 (40%), Gaps = 78/594 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ ++L D +  ++ R+ VL D ++ E   E  + ++I GNIY  KV  V P +QAAFVD
Sbjct: 1   MSKEILADVAR-DQIRIGVLEDRQLVEYYVEKTYDERITGNIYKGKVANVLPGMQAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++ FL   +++   Y + F D  A+         D   V  +V    V  P     
Sbjct: 60  IGLGKNAFLYVGDLNS--YNLGFEDADAIGDLKKAPIKDILHVGQEVLVQVVKEPIGTKG 117

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
             V+                    +   +E+ +                           
Sbjct: 118 ARVSTNITLPGRYLVLMPTVDYIGISRRIENEEERQR----------------------- 154

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
                                L      + P+      I R      D +NLK     L+
Sbjct: 155 ---------------------LKSLAEEIQPH--NMGIIVRTAAEGEDIENLKSDMEYLK 191

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I       +    I +D + L R+  +V                         
Sbjct: 192 RLWN--NIQMKQKNGKVPRLIYKDMDLLTRMVRDV------------------------- 224

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
             +  ++++  V+   GY +  +   L+  S    V  Y     IF    IE +++   +
Sbjct: 225 --FTPEVNKFYVNTSYGYEKVLEAASLISHSLKDRVSLYMGQEDIFEYFNIESEVERALE 282

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY++I+ TEAL +IDVN+G+      +EDT ++TNLEAA+EIA+QLRLRD+ 
Sbjct: 283 RKVWLKSGGYIVIDHTEALTAIDVNTGKFVGSINLEDTVVKTNLEAAKEIAKQLRLRDIG 342

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM+ +++ + V   L+  LKKDR +  V  I+N GL+EM+R+++R S+ E  
Sbjct: 343 GIIIIDFIDMDSQEHQKMVIDALEIELKKDRTKAHVLGITNLGLVEMTRKKVRQSLHEVL 402

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            KVC YC G G I S+ ++A  + + +           I++  H  V   ++      + 
Sbjct: 403 EKVCPYCDGRGRILSEETMAKKVEQEISRIFRTRKGEAILIEVHPSVAAVVIGAGGTRLS 462

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
           + E R+G  I +    +L  +   I+       L N    V          ++ 
Sbjct: 463 QLEQRYGKYIFIKGKDDLHPEEIRIKAVGSRVKLENFAMPVREGQIIDVIIEDR 516


>gi|322514328|ref|ZP_08067381.1| ribonuclease G [Actinobacillus ureae ATCC 25976]
 gi|322119782|gb|EFX91816.1| ribonuclease G [Actinobacillus ureae ATCC 25976]
          Length = 491

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 223/485 (45%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A      ++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGLLKELHIEREAKRGIVSNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q ++VQ+VK+    KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKELVEPYCDELGGFIVRTAAEEVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  + E         ++Y E  L +R +RD     IS I +  +  Y + 
Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTYISSIRIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   +V  YL+N++  A+I E EA  G  + + +      
Sbjct: 424 EILREIVRVHHWFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKKVEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETRV ++ +  ++EL  E E K+ I  NIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PSETRVALVENGLLKELHIEREAKRGIVSNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|258404590|ref|YP_003197332.1| ribonuclease, Rne/Rng family [Desulfohalobium retbaense DSM 5692]
 gi|257796817|gb|ACV67754.1| ribonuclease, Rne/Rng family [Desulfohalobium retbaense DSM 5692]
          Length = 489

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 168/421 (39%), Positives = 254/421 (60%), Gaps = 3/421 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +  +    +    +  PKK  +   + +V+K  Q +LVQ+VKE  G+KGA +TT
Sbjct: 67  AKKNGFLQVDEVHQEYYQNDIKPKKGYKYPPLHKVLKPGQEVLVQVVKEPTGSKGAFLTT 126

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSL GRY VL P   +   ISRKI +  +R+ L++I    ++  G+G+ILRT  +++TK
Sbjct: 127 YLSLPGRYFVLTPGREQTG-ISRKIDDEKERERLRKIIEDFKLDPGIGLILRTVSSNQTK 185

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             + RD ++L RLW  VR+  ++  AP L+YEE +L  RA+RD    D+SE+ V  ++  
Sbjct: 186 TNLSRDLQFLKRLWKEVRKRGVSEKAPSLIYEEKDLAFRAVRDYLTDDVSEVWVDHQETA 245

Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++ K++  L  P   R+V+Q+ +    +F R  +  QL S++  +VTLPS G ++ +QTE
Sbjct: 246 KQIKEYASLAFPRRNRLVKQHTDADRSLFERFNLIDQLQSVYSRQVTLPSGGSLVFDQTE 305

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL++ID+NSG+   E    + AL+TNLEAAEEI  QLRLRD+ G +V+DFI+M++ K++R
Sbjct: 306 ALMAIDINSGKIGGESNFAEMALKTNLEAAEEIPHQLRLRDIGGQVVIDFIEMKDNKHSR 365

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK L+ ++K D+AR  VG IS FGLLEM RQR+ SS L +T + C  C+GAG  R+  
Sbjct: 366 DVEKTLRAAVKDDKARTSVGRISRFGLLEMVRQRMGSSALSTTMEPCPCCQGAGIRRNLE 425

Query: 498 SVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
             A+  LR +   L +   A  +      ++ LYLLN KR  + E E  F  +I +    
Sbjct: 426 WQAMQALRDIRYQLNKKNGASTLDFPIGKELALYLLNTKRDRLTELEQEFQTTITISATD 485

Query: 557 E 557
            
Sbjct: 486 N 486



 Score = 97.4 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KM I     E+  VV+ +D +V+E   E  ++ + KGNIY   +  ++P+LQAAF+ YG
Sbjct: 7  RKMFISVLPGEQIEVVIAQDAKVQEYYVEMLNQAKTKGNIYKGTINNIDPALQAAFIQYG 66

Query: 63 GNRHGFLPFLEIHPDYYQ 80
            ++GFL   E+H +YYQ
Sbjct: 67 AKKNGFLQVDEVHQEYYQ 84


>gi|218887464|ref|YP_002436785.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218758418|gb|ACL09317.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 491

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 164/477 (34%), Positives = 264/477 (55%), Gaps = 5/477 (1%)

Query: 81  IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
           +P    +  L E    +   +    ++ H   T  N +         N            
Sbjct: 15  LPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFVNYG-AD 73

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
            N  +  +    +  +      K K+   +Q+V+K  Q +LVQ+VKE  G+KGA +TTYL
Sbjct: 74  KNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAFLTTYL 133

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           S+ GR+ VL P   +   +SRK+ +  +R  L+E+  GL    G+GVI+RT  A  +K  
Sbjct: 134 SMPGRFLVLTPGREQIG-VSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAGTSKTT 192

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           ++RD ++L RLW ++R+      AP L+Y+E +L  RA+RD    D++E+ V  E     
Sbjct: 193 LQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDEHTATL 252

Query: 321 AKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            +++  LL P    +V+   +    ++ R GI+ QL+ ++  EVTLPS G ++ +QTEAL
Sbjct: 253 IEEYSSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVFDQTEAL 312

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           ++ID+NSG+ + +   E  AL+TN+EAAE IA+QL+LRD+ G +V+DFI+M ++ + R V
Sbjct: 313 MAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDRNHWREV 372

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EK L+ ++K DRAR  VG +S FGLL++ RQR  SS L  T + C  CKG+G  R+    
Sbjct: 373 EKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLRRNMEWQ 432

Query: 500 ALSILRSVEEYLLQYTAHNII--VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
           +L  LR +   L       +     T ++V ++LLN KR  +++ E +FGV +++  
Sbjct: 433 SLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLERQFGVHLDIRP 489



 Score = 97.7 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 4  KMLIDASHVEETRVVVLRDN----RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          +M I     E+  V +  +     +V+E   E  H+ + KGNIY   +  V+ +LQAAFV
Sbjct: 9  RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68

Query: 60 DYGGNRHGFLPFLEIHPDYYQIP 82
          +YG +++GFL   E+HP+YY  P
Sbjct: 69 NYGADKNGFLQIDEVHPEYYNTP 91


>gi|311695342|gb|ADP98215.1| ribonuclease, Rne/Rng family [marine bacterium HP15]
          Length = 493

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 235/486 (48%), Gaps = 8/486 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  +     G++       +      A      E  + I A
Sbjct: 11  PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVDIGLERAAFIHA 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V S     +           K    I+ +++  Q L+VQ+ K+  G KGA +TT LS
Sbjct: 71  SDVVPSQSNGDE------PADTPKTVPDIRSLLREGQSLVVQVTKDPIGTKGARLTTQLS 124

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKI 259
           +  RY V MP  S      R   +    +   L E A   +     G I+RTA  + +  
Sbjct: 125 IPSRYLVFMPGVSHVGISQRIEDDTERARLKTLVEEAAAEDQDVQGGYIIRTAAEAASPE 184

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           ++  D  YL RL  ++ E      AP +VY++  L  R IRDL      ++ +   + ++
Sbjct: 185 DLIGDMAYLHRLSQSIHERIARVQAPAVVYQDLPLFIRTIRDLIRPQTEKVRIDSRESHQ 244

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
              +F++  +  +A  V  Y    PIF    +E ++      +V L S GYVII+QTEA+
Sbjct: 245 RVMEFVEEFVTEFADKVEYYPGERPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAM 304

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +ID+N+G       +E+T  +TNLEAA  I+RQLRLR+L G+I++DFIDME+ ++ R V
Sbjct: 305 TTIDINTGAFVGHRNLEETIFKTNLEAARAISRQLRLRNLGGIIIIDFIDMEDPEHQRQV 364

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            + L++ L++D A+ ++  +S  GL+EM+R+R   S+ +   + C  C G G++++  +V
Sbjct: 365 HRMLEKMLERDHAKTKITGVSELGLVEMTRKRTTESLGQVLCEPCPICDGRGFLKTTETV 424

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              + R +      Y A + +V     VV  LL+++   + + E     +I   +    +
Sbjct: 425 CYEVFREILRVNRAYDAESYLVMASQSVVDRLLDEESDNVADLETFISKTIRFQVEPFYS 484

Query: 560 DKLFYI 565
            + + +
Sbjct: 485 QEQYDV 490



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV ++ +  ++E   E   +K I GNIY  KV RV P ++AAFVD
Sbjct: 1  MSEEILINVT-PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R  F+   ++ P
Sbjct: 60 IGLERAAFIHASDVVP 75


>gi|293394183|ref|ZP_06638483.1| ribonuclease G [Serratia odorifera DSM 4582]
 gi|291423161|gb|EFE96390.1| ribonuclease G [Serratia odorifera DSM 4582]
          Length = 489

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+I        G G I+RTA       E+ +D  +L RLW
Sbjct: 136 AAHVGVSQRIESEAERDR-LKKIVGAYCDDLG-GFIIRTAAEGIGDEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   +++Y E  L +R +RD     +  I V     +    +F    +P  
Sbjct: 194 TKVMERKKRNQTKYMLYGELALAQRILRDFAGAALDRIRVDSRLTHDLLVEFTAEYIPDM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 SSKLELYTGSQPIFDLYDVENEVQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEEHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHVLCHDCPTCNGRGTVKTVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+  + V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|88608043|ref|YP_506020.1| ribonuclease [Neorickettsia sennetsu str. Miyayama]
 gi|88600212|gb|ABD45680.1| ribonuclease, Rne/Rng family [Neorickettsia sennetsu str. Miyayama]
          Length = 549

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 163/607 (26%), Positives = 260/607 (42%), Gaps = 82/607 (13%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K+LID+    ETR+ +LR   +   D E  +    KGNIY   V +V+ SLQAAFV+Y 
Sbjct: 2   KKILIDSRDG-ETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEYL 60

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
              +GFLPF EI   Y+         LL+E            +   H + T      L  
Sbjct: 61  PGEYGFLPFSEIPVIYF--------DLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVL 112

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
              +    + T++ ++ +                      K   +YC+        IL  
Sbjct: 113 FVQVTKEKRRTKDVTLTA--------------------YVKLPGRYCVLMPFLKDLILSK 152

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           QIV E+                              +SR      +    ++        
Sbjct: 153 QIVDEQ-----------------------------AVSRLTHFAEEEMANRKC------- 176

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
              GV+ +   A   K  I  D+  L+  W+ V      S AP LV+ E NL+K+ +RD 
Sbjct: 177 ---GVVFKPYCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDS 233

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
           Y   + E+IV+    Y+EAKD+++  +      +  Y D  P+F +  +E Q+D L++  
Sbjct: 234 YDGSVGEVIVNHSDVYQEAKDYIQNSLHFENPNITLYSDTLPVFDKYKVEPQVDGLYEET 293

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           + L +  Y++IN TEAL ++DVNSGR  +E  IE+TA + N+EA  EI R L LR +AG+
Sbjct: 294 IYLRNGAYIVINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGI 353

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           +V+DFIDM   K   +VE+ L ++ K+ R+RVQ+  I+ FGL+ +S+QR + ++L+S T 
Sbjct: 354 VVIDFIDMNNSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTV 413

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
            C  C+G G +         + R             + V  + ++ + + N  R  + + 
Sbjct: 414 KCPCCEGKGKVLKMEH---QVRRVFSAIYTAPRCREVTVTANPELAVAVFNGYRKMLAQA 470

Query: 543 EARFGVSINVVIGIEL-----------ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
           E   G SI   I  +L                 I +   V   V       + ++  S  
Sbjct: 471 EKVVGGSIVFKIDEKLGLAKGFEIAFHGKDDVEILREDQVLTTVEDQSNEKTVTEGSSVV 530

Query: 592 KNIECVW 598
           K      
Sbjct: 531 KVESRRS 537


>gi|16762129|ref|NP_457746.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16766665|ref|NP_462280.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143618|ref|NP_806960.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56415297|ref|YP_152372.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62181878|ref|YP_218295.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161616389|ref|YP_001590354.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167552925|ref|ZP_02346676.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167993954|ref|ZP_02575047.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233953|ref|ZP_02659011.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168239395|ref|ZP_02664453.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245047|ref|ZP_02669979.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262609|ref|ZP_02684582.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168463396|ref|ZP_02697313.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194444534|ref|YP_002042625.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194449343|ref|YP_002047398.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472427|ref|ZP_03078411.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734919|ref|YP_002116318.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197251153|ref|YP_002148294.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197261610|ref|ZP_03161684.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364227|ref|YP_002143864.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198245300|ref|YP_002217339.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200389106|ref|ZP_03215718.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204931177|ref|ZP_03221971.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205354271|ref|YP_002228072.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858618|ref|YP_002245269.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213022705|ref|ZP_03337152.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
 gi|213051957|ref|ZP_03344835.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213647004|ref|ZP_03377057.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213865157|ref|ZP_03387276.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|224585167|ref|YP_002638966.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238913550|ref|ZP_04657387.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|25516553|pir||AG0911 ribonuclease G (EC 3.1.4.-) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421930|gb|AAL22239.1| RNase G [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16504432|emb|CAD07885.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139253|gb|AAO70820.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56129554|gb|AAV79060.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62129511|gb|AAX67214.1| RNase G [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|161365753|gb|ABX69521.1| hypothetical protein SPAB_04198 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403197|gb|ACF63419.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194407647|gb|ACF67866.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458791|gb|EDX47630.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710421|gb|ACF89642.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633335|gb|EDX51749.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197095704|emb|CAR61273.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197214856|gb|ACH52253.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197239865|gb|EDY22485.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287894|gb|EDY27282.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939816|gb|ACH77149.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199606204|gb|EDZ04749.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204319944|gb|EDZ05150.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205274052|emb|CAR39058.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322513|gb|EDZ10352.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205328120|gb|EDZ14884.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332024|gb|EDZ18788.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336179|gb|EDZ22943.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205348575|gb|EDZ35206.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710421|emb|CAR34779.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469695|gb|ACN47525.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248533|emb|CBG26371.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995575|gb|ACY90460.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159919|emb|CBW19438.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914398|dbj|BAJ38372.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225208|gb|EFX50267.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322614511|gb|EFY11441.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618267|gb|EFY15158.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625980|gb|EFY22794.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626750|gb|EFY23547.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631318|gb|EFY28078.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635415|gb|EFY32129.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643415|gb|EFY39979.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322649745|gb|EFY46172.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655581|gb|EFY51887.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658389|gb|EFY54654.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664387|gb|EFY60583.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667393|gb|EFY63555.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674641|gb|EFY70733.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675728|gb|EFY71801.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682364|gb|EFY78387.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684771|gb|EFY80772.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322716368|gb|EFZ07939.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131731|gb|ADX19161.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323196151|gb|EFZ81311.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196717|gb|EFZ81862.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204354|gb|EFZ89363.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207702|gb|EFZ92649.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210008|gb|EFZ94913.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214277|gb|EFZ99030.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219045|gb|EGA03551.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225032|gb|EGA09285.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230384|gb|EGA14503.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233360|gb|EGA17454.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239397|gb|EGA23447.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242352|gb|EGA26378.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247294|gb|EGA31259.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250384|gb|EGA34268.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256832|gb|EGA40547.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263884|gb|EGA47403.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264095|gb|EGA47603.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271646|gb|EGA55065.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625118|gb|EGE31463.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326629394|gb|EGE35737.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332990228|gb|AEF09211.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 489

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 486


>gi|241766069|ref|ZP_04763984.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN]
 gi|241363925|gb|EER59219.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN]
          Length = 495

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 126/424 (29%), Positives = 211/424 (49%), Gaps = 2/424 (0%)

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
            V    +   GG      +K +    I++ +   Q L+VQ++K+  G KGA ++T +S+A
Sbjct: 69  HVADVWQRQDGGEAPMFARKGEPPVPIEKQVFEGQSLMVQVIKDPIGTKGARLSTQISIA 128

Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           GR  V +P         +         R  L+ +        G G ILRT G   +  E+
Sbjct: 129 GRLLVYLPQDDHVGVSQKIPVAERDALRARLQALVGDKASGGGGGFILRTNGEDSSDAEL 188

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             D  YL + W  ++E +L   A  L++++ +L++R +RDL       I +   + +   
Sbjct: 189 AEDIAYLRKTWARIKEASLRLPATSLLHQDLDLLQRVLRDLVGDHTQTIRIDSVEQFHRL 248

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + F +  MP+ A  ++ Y+   PIF    I+ ++       V L S GY+I++QTEAL +
Sbjct: 249 RAFGQEFMPAAAGKLQHYKGERPIFDLYSIDEEVSKALGRRVDLKSGGYLIVDQTEALTT 308

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVN+G        +DT  +TNLEAA+ IARQLRLR+L G+I+VDFIDM  + +  +V  
Sbjct: 309 VDVNTGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMAREDHQEAVLT 368

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           + K+ L +DR +   G  S  GL+EM+R+R R S+     + C+ C+GAG +++  SV  
Sbjct: 369 EFKKQLARDRVKTMSGGFSQLGLVEMTRKRTRESLAHMLCEPCSVCQGAGQVKTARSVCY 428

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +LR +     Q+      V     VV   L+++   +       G  I++     +  +
Sbjct: 429 DVLREILREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQAESAMGQE 488

Query: 562 LFYI 565
            + I
Sbjct: 489 QYDI 492



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ S  +ETRV V+    V+EL  E   ++ + GN+YL KV+RV P +Q+AF+D
Sbjct: 1  MQQDILINWS-PQETRVAVVEHGAVQELHIERTLERGLVGNVYLGKVSRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 IGLERAAFLHVADV 73


>gi|330446794|ref|ZP_08310445.1| ribonuclease G [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490985|dbj|GAA04942.1| ribonuclease G [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 489

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 129/484 (26%), Positives = 218/484 (45%), Gaps = 8/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+++   + +   E  +     G++       +      A      ++ + + A
Sbjct: 11  PSETRVAMIEHGVLQEIHIERESKRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHA 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +         K  +   I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 71  SDIVPHTECVAENEK------KQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDIT 124

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +  K + +  +     G I+RTA       E+
Sbjct: 125 LPSRYLVFMPGASHVGVSQRIESEKERDRLKKAVMQHCDDL--GGFIIRTAAEGANTDEV 182

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D  +L  LW  V E         ++Y E  L +R +RD    +I  I V     + + 
Sbjct: 183 AQDAAFLKHLWRKVLERRAKYKPRSMLYGELGLAQRILRDFVGTEIDNIKVDSRLSFEKL 242

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F    +P     +  Y    PIF     E ++      +V + S GY+II+QTEA+ +
Sbjct: 243 KEFTDEFVPEVTENIEYYSGQQPIFDLYDTEAEIQRSLDRKVEMKSGGYLIIDQTEAMTT 302

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +++T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ R V +
Sbjct: 303 IDINTGAFVGRRNLDETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMVSDEHQRRVLQ 362

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+++L  DR +  +   +  GL+EM+R+R R S+       C  C G G +++  SV  
Sbjct: 363 ALEQALSYDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPSCDGRGTVKTVESVCY 422

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR +      Y A   IV+  S V   L   +   + E E   G  + +        +
Sbjct: 423 EILREITRVNRAYDADRFIVYVSSAVGEALTGDESHALAELEVFIGKQVKIKPEPLYNQE 482

Query: 562 LFYI 565
            F +
Sbjct: 483 QFDV 486


>gi|312884606|ref|ZP_07744309.1| ribonuclease G [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367698|gb|EFP95247.1| ribonuclease G [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 489

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 122/413 (29%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R   +  + +N  +   G       G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRI--DSEEERNRLKRVVGKYCDEDGGFIIRTAAEGADDKELSQDASFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++++I+V     +   K+F    +P  
Sbjct: 194 SKVTERRAKYKTRSTLYGELGLSQRVLRDFVGTELTKILVDSRLEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  YE   PIF     E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TEKLELYEGEKPIFDMYDTENEIQRALERKVVLKSGGYLIIDQTEAMTTIDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V   L+ SL KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMTSEEHRQRVIHSLQVSLDKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   +LR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGRVKTVESVCYEVLREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y     +V+    V   L   +   + E E   G  + +        + F +
Sbjct: 434 AYDVDKFVVYASPAVADTLQGDEYHALAELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|146313317|ref|YP_001178391.1| ribonuclease G [Enterobacter sp. 638]
 gi|145320193|gb|ABP62340.1| RNAse G [Enterobacter sp. 638]
          Length = 489

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K    G       G I+RTA    ++ ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESEDERERLKK--VVGAYCDEQGGFIIRTAAEGISEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTYDALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             ++  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 PGLLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV      VC  C G G ++S  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNVCPTCNGRGTVKSVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQQQFDV 486


>gi|240949400|ref|ZP_04753741.1| ribonuclease G [Actinobacillus minor NM305]
 gi|240296149|gb|EER46805.1| ribonuclease G [Actinobacillus minor NM305]
          Length = 491

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 132/485 (27%), Positives = 224/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V K       I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFVVKN------ISELVREGQDIIVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA        +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEDVAHESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  V +         ++Y E  L +R +RD     IS + +  +  + + 
Sbjct: 184 EQDTIFLKRLWRKVLDRKAKYPTRSMLYGELALAQRVLRDFVGTHISSVKIDSKITFEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLNEFMPELTDSVSLYSGTQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRDLAHTIFNTNIEATKAIAHQLQLRNLGGIIIIDFIDMQEEEHRLRVLE 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+++LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLEQALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   +V  YL++++  A++ E EA  G  + + +      
Sbjct: 424 EILREIVRVHHLFNTEKVRVYASKEVAEYLIHEETHASLAELEAFIGKKVEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488


>gi|167855018|ref|ZP_02477792.1| ribonuclease G [Haemophilus parasuis 29755]
 gi|167853866|gb|EDS25106.1| ribonuclease G [Haemophilus parasuis 29755]
          Length = 491

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 227/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V K       I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDESEKKQFVVKN------ISELVREGQDIVVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA  S ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKSLVEPYCDELGGFIVRTAADSVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  V E      A  L+Y E  L +R +RD     I  I +  +  Y + 
Sbjct: 184 EQDAAFLKRLWRKVLERKGKYPARSLLYGELALAQRVLRDFVGTHIHSIQIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP  A+ V  Y    P+F    IE  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLAEFMPELAKNVSLYSGTLPLFDVYRIEDGIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++ + V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRQRVLE 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +LK DR +  V   +  GL+EM+R+R R S+       C+ CKG G I++  +V  
Sbjct: 364 SLELALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCSSCKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-IVEYEARFGVSINVVIGIELAD 560
            I+R V      Y +   +V+    V  YL+N++    + E E   G  + + I      
Sbjct: 424 EIVREVVRVHHLYKSERYVVYASRSVAEYLINEESHALLAELEVFIGKKVEIKIEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETRV ++ +  ++E+  E E K+ + GNIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|161506076|ref|YP_001573188.1| ribonuclease G [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160867423|gb|ABX24046.1| hypothetical protein SARI_04263 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 489

 Score =  257 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 486


>gi|223042068|ref|ZP_03612244.1| ribonuclease G [Actinobacillus minor 202]
 gi|223017143|gb|EEF15579.1| ribonuclease G [Actinobacillus minor 202]
          Length = 491

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 224/485 (46%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V K       I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEKKQFVVKN------ISELVREGQDIIVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA        +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEDVAHESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  V E         ++Y E  L +R +RD     IS + +  +  + + 
Sbjct: 184 EQDTIFLKRLWRKVLERKAKYPTRSMLYGELALAQRVLRDFVGTHISSVKIDSKITFEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +
Sbjct: 244 KEFLNEFMPELTDSVSLYSGTQTLFDAYGVEEAIQKALDKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V +
Sbjct: 304 IDINTGAFVGHRDLAHTIFNTNIEATKAIAHQLQLRNLGGIIIIDFIDMQEEEHRLRVLE 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+++LK DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V  
Sbjct: 364 SLEQALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCPACKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            ILR +      +    + V+   DV  YL++++  A++ E EA  G  + + +      
Sbjct: 424 EILREIVRVHHLFNTEKVRVYASKDVAEYLIHEETHASLAELEAFIGKKVEIKLEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETRV ++ +  ++EL  E E K+ I GNIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|219870358|ref|YP_002474733.1| ribonuclease G [Haemophilus parasuis SH0165]
 gi|219690562|gb|ACL31785.1| ribonuclease G [Haemophilus parasuis SH0165]
          Length = 491

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 228/485 (47%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  A     G++       +      A      E+ + + A
Sbjct: 12  PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V K       I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDESEKKQFVVKN------ISELVREGQDIVVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA  S ++  +
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKSLVEPYCDELGGFIVRTAADSVSEESL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D  +L RLW  V E      A  L+Y E  L +R +RD     I  I +  +  Y + 
Sbjct: 184 EQDAAFLKRLWRKVLERKGKYPARSLLYGELALAQRVLRDFVGTHIHSIQIDSKMTYEQV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+F+   MP  A+ V  Y    P+F    IE  +    +  V L S GY+II QTEA+ +
Sbjct: 244 KEFLAEFMPELAKNVSLYSGTLPLFDVYRIEDGIQKALEKRVDLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++ + V +
Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRQRVLE 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +LK DR +  V   +  GL+EM+R+R R S+       C+ CKG G I++  +V  
Sbjct: 364 SLELALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCSSCKGRGTIKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-IVEYEARFGVSINVVIGIELAD 560
            I+R V      Y +   +V+    V  YL+N++    + E E   G  + + I      
Sbjct: 424 EIVREVVRVHHLYKSERYVVYASRSVAEYLINEESHALLAELEVFIGKKVEIKIEPYYHQ 483

Query: 561 KLFYI 565
             F +
Sbjct: 484 DQFDV 488



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETRV ++ +  ++E+  E E K+ + GNIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|124266537|ref|YP_001020541.1| ribonuclease G [Methylibium petroleiphilum PM1]
 gi|124259312|gb|ABM94306.1| ribonuclease G [Methylibium petroleiphilum PM1]
          Length = 490

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 125/401 (31%), Positives = 206/401 (51%), Gaps = 4/401 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I+  +   Q LLVQ++K+  G KGA ++T +S+AGR  V +P   +     +  ++ + 
Sbjct: 87  PIERQVFEGQALLVQVIKDSIGTKGARLSTQISIAGRLLVFLPQDDRIGISQKIGSHELR 146

Query: 229 RKNLKEIARGLEVPAG----MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
            +    +   +  P G     G ILRT     T  E+  D  YL + W  +RE A  + +
Sbjct: 147 EQLRTRMQALVAPPNGGSSSGGFILRTNAEEATDAELAEDIAYLRKTWTAIRERAFKAPS 206

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
             L++ + NL++R +RDL       + +     Y   K+F +  MPS    +  Y    P
Sbjct: 207 GTLLHLDLNLMQRVLRDLTHDQTHAVRIDSRMQYEALKEFGEQYMPSSVAKLEHYHGERP 266

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   GI+ +++      V L S GY+II+QTEAL +IDVN+G        ++T  +TNL
Sbjct: 267 IFDLFGIDQEIERALARRVDLKSGGYLIIDQTEALTTIDVNTGGYVGARNFDETIFKTNL 326

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA  IARQLRLR+L G+I++DFIDM  +++  +V  +L++ L +DR +  V   +  GL
Sbjct: 327 EAALAIARQLRLRNLGGIIIIDFIDMAREEHQNAVLAELRKQLARDRTKTTVSGFTQLGL 386

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R R S+     + C  C+G G +++  SV   ILR +     Q+      V   
Sbjct: 387 VEMTRKRTRESLAHLLCEPCPTCQGKGQVKTPRSVCYDILREILREARQFNPKEFRVVAS 446

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + VV  LL+++   +       G  +++     L+ + + I
Sbjct: 447 AAVVEMLLDEESQHLAGLSDFIGKPVSLQTEPGLSPEAYDI 487



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +LI+ S  +ETRV ++ +  V+EL  E   ++ + GNIY  +V RV P +Q+AF+D G  
Sbjct: 4  ILINWS-PQETRVAIIENGAVQELHLERTLERGLVGNIYAGRVVRVLPGMQSAFIDIGLE 62

Query: 65 RHGFLPFLEIH 75
          R  FL   ++H
Sbjct: 63 RAAFLHVADLH 73


>gi|168822734|ref|ZP_02834734.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205340928|gb|EDZ27692.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320087817|emb|CBY97581.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 489

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 122/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   ++R +     
Sbjct: 374 KTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEVMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 486


>gi|332701621|ref|ZP_08421709.1| ribonuclease, Rne/Rng family [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551770|gb|EGJ48814.1| ribonuclease, Rne/Rng family [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 485

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 159/417 (38%), Positives = 242/417 (58%), Gaps = 4/417 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +  +    +         K  R   +Q V+K  Q LLVQ+VKE  G+KGA +TT
Sbjct: 67  AKKNGFLQIDEVHPEYYQGGYQIPKGSRFPPLQSVLKPGQELLVQVVKEPTGSKGAFLTT 126

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSL GRY VL P   +   ISRKI +  +RK LKE+   ++   G+G+I+RT  ++ TK
Sbjct: 127 YLSLPGRYFVLTPGREQLG-ISRKIEDEEERKRLKELVESMQPGEGLGLIVRTVSSAETK 185

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             + +D +YL RLW  +R+    +  P L+Y+E  L  RA+RD    D+SEI V  ++  
Sbjct: 186 TNLDKDVQYLKRLWKEIRKRGTTADTPSLIYQEMELSSRAVRDYLTADVSEIWVDDQETA 245

Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
            +  + + ++ P    +V+ + E    +F R  +  QLD ++   VTLPS G ++ +  E
Sbjct: 246 TQVTELVSIVFPRRQSMVKVHTEHELSLFDRFNLTRQLDQIYSRTVTLPSGGQIVFDHAE 305

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL +ID+NSGR   +   +D AL++NLEAAEEIARQLRLRD+ G IVVDFI+M++KK+ +
Sbjct: 306 ALTAIDINSGRIGGKKSFKDLALKSNLEAAEEIARQLRLRDIGGQIVVDFIEMKDKKHVK 365

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK ++ ++K DRAR  VG IS FGL+E+ RQR+  S +  + ++C  C+G G  R+  
Sbjct: 366 EVEKIMRTAIKNDRARTDVGRISRFGLMELVRQRMGVSAVSQSHELCPCCQGYGLRRNME 425

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHT--HSDVVLYLLNQKRATIVEYEARFGVSINV 552
             A+  L+ +   L  + +     +    ++V  +LLN KR  I E E +FG  + +
Sbjct: 426 WQAMQALKEIYRKLRGHKSGEPFEYIAASAEVARHLLNDKRGMIHELEDKFGAIVRI 482



 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KM I     E+  +V+  D +++E   E  H+ + KGNIY   +  V+  LQAAF++YG
Sbjct: 7  RKMFISVLPGEQIELVLAEDAKIQEYYVELLHQAKTKGNIYKGVIHNVDAGLQAAFINYG 66

Query: 63 GNRHGFLPFLEIHPDY----YQIPFSDR 86
            ++GFL   E+HP+Y    YQIP   R
Sbjct: 67 AKKNGFLQIDEVHPEYYQGGYQIPKGSR 94


>gi|283836206|ref|ZP_06355947.1| ribonuclease G [Citrobacter youngae ATCC 29220]
 gi|291067561|gb|EFE05670.1| ribonuclease G [Citrobacter youngae ATCC 29220]
          Length = 489

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESETERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|157148822|ref|YP_001456141.1| ribonuclease G [Citrobacter koseri ATCC BAA-895]
 gi|157086027|gb|ABV15705.1| hypothetical protein CKO_04655 [Citrobacter koseri ATCC BAA-895]
          Length = 489

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKNFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESETERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGHQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|254238862|ref|ZP_04932185.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa C3719]
 gi|126170793|gb|EAZ56304.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa C3719]
          Length = 485

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G KGA +TT+LS+  RY V MP TS      R        
Sbjct: 84  ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  K   +      +    G ILRTA     + EI  D  YL RLWD +        AP 
Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+ +L  R +RDL    I +I +   + +++   F++ LMP  +  +  Y    PIF
Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S GY+I++ TEA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+++   + C  C+G G +++  +    I R +      Y A + +V  +  
Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + + EA  G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  +V  V P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVWVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHAAEI 73


>gi|238754644|ref|ZP_04615997.1| Ribonuclease G [Yersinia ruckeri ATCC 29473]
 gi|238707103|gb|EEP99467.1| Ribonuclease G [Yersinia ruckeri ATCC 29473]
          Length = 437

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 24  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 83

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK          G G I+RTA       E+  D  +L RLW
Sbjct: 84  AAHVGVSQRIESEAERER-LKNTVASYCDEQG-GFIIRTAAEGIGAEELSADAAFLKRLW 141

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+           +Y E  L +R +RD     +  I V     Y +  +F K  +P  
Sbjct: 142 AKVQLRKKRDKTKCKLYGEMALAQRILRDFAGAALDRIRVDSRLTYEQLVEFTKEYIPEM 201

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 202 TNKLEHYSGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 261

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 262 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 321

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G ++S  +V   ILR +     
Sbjct: 322 KTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKSVETVCYEILREIVRVHH 381

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 382 AYDSDRFLVYASPSVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 434


>gi|171058629|ref|YP_001790978.1| ribonuclease [Leptothrix cholodnii SP-6]
 gi|170776074|gb|ACB34213.1| ribonuclease, Rne/Rng family [Leptothrix cholodnii SP-6]
          Length = 493

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 209/401 (52%), Gaps = 3/401 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I++++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         +  ++ +
Sbjct: 90  PPIEKLVYEGQSLVVQVIKDPIGTKGARLSTQISVAGRLLVYLPQDEHIGISQKIGSHEL 149

Query: 228 DRKNLKEIARGL---EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
             +  + +A  +   +   G G ILRT     T  E+  D  YL + W  +R LAL S A
Sbjct: 150 REQLRQRMAVLVGTRDSGGGGGFILRTNAEDATDAELAEDIAYLRKAWATMRALALKSAA 209

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
             L++E+ NL +R +RDL  ++   I +     +   ++F +  MPS    ++ Y+   P
Sbjct: 210 GTLLHEDLNLAQRVLRDLVNENTQSIRIDSRTQFEALREFGQQFMPSAVGRLQHYKGERP 269

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF    I+ +++      V L S GY++++QTEAL +IDVN+G        +DT  +TNL
Sbjct: 270 IFDLFSIDQEIERALARRVDLKSGGYLVVDQTEALTTIDVNTGGFVGARNFDDTIFKTNL 329

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EA + IARQLRLR+L G+I++DFIDM   ++   V  +L++ L +DR +  +   +  GL
Sbjct: 330 EAGQAIARQLRLRNLGGIIIIDFIDMTRPEHQEQVLAELRKQLARDRTKTTISGFTQLGL 389

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R R S+     + C  C G G  ++  SV   ILR +     Q+      V   
Sbjct: 390 VEMTRKRTRESLAHMLCEPCPTCGGRGQTKTARSVCYDILREILREARQFNPKEFRVIAC 449

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + VV  LL+++   I       G  I++ +   +  + + I
Sbjct: 450 AAVVEMLLDEESQHIAGLSDFIGKPISLQVEATMNPEQYDI 490



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV ++ +  V+EL  E   ++ + GN+YL KV RV P +Q+AF+D G  
Sbjct: 4  ILVNWA-PQETRVAIVENGAVQELHVERTLERGLVGNVYLGKVARVLPGMQSAFIDIGLE 62

Query: 65 RHGFLPFLEIH 75
          R  FL   ++H
Sbjct: 63 RAAFLHVADVH 73


>gi|156935764|ref|YP_001439680.1| ribonuclease G [Cronobacter sakazakii ATCC BAA-894]
 gi|156534018|gb|ABU78844.1| hypothetical protein ESA_03634 [Cronobacter sakazakii ATCC BAA-894]
          Length = 489

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK I        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESETERER-LKRIVADYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    MP  
Sbjct: 194 TKVMERKKRHQTRYQLYGELALAQRVLRDFAVAQLDRIRVDSRLTYEMLLEFTAEYMPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKSDESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|237730162|ref|ZP_04560643.1| ribonuclease G [Citrobacter sp. 30_2]
 gi|226908768|gb|EEH94686.1| ribonuclease G [Citrobacter sp. 30_2]
          Length = 489

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESETERER-LKKVVADYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|288942225|ref|YP_003444465.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
 gi|288897597|gb|ADC63433.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
          Length = 484

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 214/401 (53%), Gaps = 1/401 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   I E+++   +++VQ+VK+  G KGA +TT +S+A RY V MP  S      +    
Sbjct: 81  RGDQIHELVREGDMIVVQVVKDPLGTKGARLTTNISIASRYLVCMPAVSTTGVSQKIEDE 140

Query: 226 PVDRKNLKEIARGLEVPAGM-GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
              R+  + + R +E   G  G I RTA  + ++  +++D  +L +LW  ++E   +   
Sbjct: 141 DERRRLREILLRYVEAHQGEGGFIARTAAEAVSEEALEKDMAFLAKLWRGIKERCAHVNQ 200

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
             LV+++  L  RA+RDL   ++  I +       +A  F    +P     +  Y+   P
Sbjct: 201 IGLVHDDLALALRALRDLVTPEVERIRIDSRAMVDKAVSFATKYIPEIQGRIEYYQGERP 260

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F   G+E ++    Q +V+L S G+++I+QTEA+ +IDVN+G       +E+T  +TNL
Sbjct: 261 LFDLYGVEEEIRKALQRKVSLKSGGHLVIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNL 320

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA+ I RQLRLR+L G+I++DFIDM E ++ R V + L++ L +D A+  +  +S+ GL
Sbjct: 321 EAAQAICRQLRLRNLGGIIIIDFIDMTEDEHKRQVLRALEKCLARDHAKTHITEVSSLGL 380

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R R S+     + C  C G G I++  +    I R +     Q+    ++V   
Sbjct: 381 VEMTRKRTRESLEHVLCEPCPCCGGRGSIKTAETTCYEIFREILRESRQFEVETLLVLAS 440

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +VV  LL+++ A + E E   G  I +        + + +
Sbjct: 441 QEVVDRLLDEESAHLAELEEFIGRPIRLQAEALYTQEQYDV 481


>gi|317151901|ref|YP_004119949.1| ribonuclease, Rne/Rng family [Desulfovibrio aespoeensis Aspo-2]
 gi|316942152|gb|ADU61203.1| ribonuclease, Rne/Rng family [Desulfovibrio aespoeensis Aspo-2]
          Length = 489

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 157/432 (36%), Positives = 236/432 (54%), Gaps = 2/432 (0%)

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
            I N  Q          N  +  +    +  +     KK  R   +Q+V+K  Q +LVQ+
Sbjct: 54  NIDNGLQAAFINYGAERNGFLQIDEVHPEYYTGSYPMKKGARYPLMQKVLKAGQEVLVQV 113

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           VKE  G KGA +TTYLSL GR  V      +   +SRKI N  +R  LK+         G
Sbjct: 114 VKEPTGKKGAFLTTYLSLPGRSFVYTVGRGQMG-VSRKIENEKERDRLKKALESFTTTEG 172

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304
           +G+I RTA   ++K  ++RD++YL RLW+++R  A    AP +VY+E  L  RA+RD   
Sbjct: 173 VGLIARTAAIGQSKAALERDYKYLNRLWEDIRANAQKVKAPAMVYQELGLAARAVRDYLT 232

Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEV 363
            D++EI V     + +   F+KL  P    +V+ + +    +  R  +  Q+  ++  E 
Sbjct: 233 LDVTEIWVDDTLTFEQISQFVKLAFPRKNNLVKLHEDTDLSLLERFNLVKQVQEIYSREA 292

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
           ++PS G ++ + TEAL +ID+NSG+   E   +  AL+TNLEAA EIARQLRLRD+ G +
Sbjct: 293 SMPSGGRLVFDATEALTAIDINSGKIGGEKNFQKMALKTNLEAATEIARQLRLRDIGGQV 352

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFI+M+  K+ R VEK +K  +K DRAR  V  IS FGL+E+ RQR+ SS +  +T+ 
Sbjct: 353 VIDFIEMKNPKDCREVEKVMKAEMKNDRARTDVSRISPFGLMELVRQRLGSSAIAISTEP 412

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  CKG G  R+    A+  L+ +     +     +      ++ +YLLN KR  + + E
Sbjct: 413 CPCCKGTGIRRNMEWQAMQALKDIHREARKPGQDLVEYTCEEELAIYLLNNKRGVLADLE 472

Query: 544 ARFGVSINVVIG 555
            R+G  I+V I 
Sbjct: 473 IRYGKRIHVDIE 484



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          KM I     E+  VV+  + +V E   E  H+ + KG+IY   +  ++  LQAAF++YG 
Sbjct: 9  KMFISVLPGEQVEVVIAEEGKVNEYYVEMLHQAKTKGDIYKGYIHNIDNGLQAAFINYGA 68

Query: 64 NRHGFLPFLEIHPDYY 79
           R+GFL   E+HP+YY
Sbjct: 69 ERNGFLQIDEVHPEYY 84


>gi|218893568|ref|YP_002442437.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa LESB58]
 gi|218773796|emb|CAW29610.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa LESB58]
          Length = 485

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G KGA +TT+LS+  RY V MP TS      R        
Sbjct: 84  ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEDERE 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  K   +      +    G ILRTA     + EI  D  YL RLWD +        AP 
Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+ +L  R +RDL    I +I +   + +++   F++ LMP  +  +  Y    PIF
Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S GY+I++ TEA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+++   + C  C+G G +++  +    I R +      Y A + +V  +  
Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + + EA  G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  +V RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHAAEI 73


>gi|320106123|ref|YP_004181713.1| ribonuclease, Rne/Rng family [Terriglobus saanensis SP1PR4]
 gi|319924644|gb|ADV81719.1| ribonuclease, Rne/Rng family [Terriglobus saanensis SP1PR4]
          Length = 1201

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 145/483 (30%), Positives = 243/483 (50%), Gaps = 2/483 (0%)

Query: 84   SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
             D      E +   ++               P     +        S   +        +
Sbjct: 719  EDTDEPFSEEDGESSEDSDATAPAAANGEGSPRRERSDRGDRGRRDSGRRDRNDRGGDRS 778

Query: 144  DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
                      GG       +      I +++K  Q +LVQI KE    KGA +T++++L 
Sbjct: 779  GARRTGGSGGGGRGGRPRVQASDLPAISDLLKPGQEILVQIAKEPIAKKGARITSHIALP 838

Query: 204  GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
            GR+ V MP  +    +SRKI++  +R+ LK I    +  A  G I+RTA    ++ E++ 
Sbjct: 839  GRFLVFMPTVNHTG-VSRKISSDEERRRLKTILLSEKGDATGGFIVRTAADGASEEELRS 897

Query: 264  DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
            D  +L+ LW +++  + +S +P L+Y + NL++R +RD    + S I V  E  Y     
Sbjct: 898  DLRFLINLWSDIKSRSESSKSPALIYHDLNLVERILRDQVGDNFSAIWVDTEAEYERVLR 957

Query: 324  FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
            F++   PS  R V+ Y    P+F + G+  ++D   +++V L S G ++INQTEALV+ID
Sbjct: 958  FLQRFQPSLIRRVKLYTKETPLFEQFGVTAEIDKALKSKVWLKSGGSIVINQTEALVAID 1017

Query: 384  VNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
            VN+G+   +    EDT ++TNL+A  EI RQ+RLRDL G+IV+DFIDM+++KN   V + 
Sbjct: 1018 VNTGKYVGKTTRLEDTIVKTNLDAIPEIVRQIRLRDLGGIIVIDFIDMDDRKNRNKVMQA 1077

Query: 443  LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            L + LK DRA  +V   ++FGL+ ++R+R+R S+  + +  CT C G G ++S  +VA  
Sbjct: 1078 LDDELKTDRAPSKVLQFNDFGLVIITRKRVRQSLERTLSTQCTVCTGTGMVKSPITVANE 1137

Query: 503  ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
            I   + +        ++++  H +VV  L       +++ E     +I V     L+ + 
Sbjct: 1138 IFIEMRKMYRHMDKGDMMLRVHPEVVKTLKASGSRWLLDMEELTKKTILVKSDPSLSPEQ 1197

Query: 563  FYI 565
            F I
Sbjct: 1198 FDI 1200



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++ I +S   ETR+ ++ ++ + E+ +E E++  + G+IY  KVTRV P +Q++FVD
Sbjct: 1  MSKEIFI-SSTPHETRLAIVENDALSEIYYERENEYTLAGSIYNGKVTRVLPGMQSSFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G  R  FL   +
Sbjct: 60 IGLERDAFLYVTD 72


>gi|262273866|ref|ZP_06051679.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Grimontia hollisae CIP 101886]
 gi|262222281|gb|EEY73593.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Grimontia hollisae CIP 101886]
          Length = 489

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 130/484 (26%), Positives = 222/484 (45%), Gaps = 8/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+++   + +   E  A     G++       +      A      ++ + + A
Sbjct: 11  PSETRVAMIEAGYLQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDIGLDKAAFLHA 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +            +   I E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 71  SDIVPHTECVAENEKQ------QFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDIT 124

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     + LK I        G G I+RTA    ++ E+
Sbjct: 125 LPSRYLVFMPGASHVGVSQRIESEAERER-LKRIVSEYCDDLG-GFIIRTAAEGASEQEM 182

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D  +L RLW+ V E      +  ++Y E  L +R +RD    ++  I V         
Sbjct: 183 AQDAAFLKRLWNKVLERRAKRPSKSMLYGELGLAQRILRDFVGTELDIIRVDSRSAVEAL 242

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           ++F    +P  +  +  Y    PIF     E ++      +V L S GY+II+QTEA+ +
Sbjct: 243 REFTDEFVPELSDKIELYTGEQPIFDMYDTENEIQRSLDRKVELKSGGYLIIDQTEAMTT 302

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +D+N+G       +E+T   TN+EA   IARQLRLR+L G+I++DFIDM  +++ + V +
Sbjct: 303 VDINTGAFVGRRNLEETIFNTNIEATRAIARQLRLRNLGGIIIIDFIDMISEEHRQRVLQ 362

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +L KDR +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V  
Sbjct: 363 SLELALSKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCGECPTCEGRGSVKTVETVCY 422

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +LR +      Y A   +V+    V   L   +   + E E   G  + V I      +
Sbjct: 423 EVLREITRVNRAYDADKFVVYASPSVGEALEGDESHAVAELEVFIGKQVKVHIEPLYTQE 482

Query: 562 LFYI 565
            F +
Sbjct: 483 QFDV 486


>gi|254244710|ref|ZP_04938032.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 2192]
 gi|126198088|gb|EAZ62151.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 2192]
          Length = 485

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G KGA +TT+LS+  RY V MP TS      R        
Sbjct: 84  ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  K   +      +    G ILRTA     + EI  D  YL RLWD +        AP 
Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+ +L  R +RDL    I +I +   + +++   F++ LMP  +  +  Y    PIF
Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S GY+I++ TEA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+++   + C  C+G G +++  +    I R +      Y A + +V  +  
Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + + EA  G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY+ +V RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYMGRVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHAAEI 73


>gi|317123011|ref|YP_004103014.1| RNAse G [Thermaerobacter marianensis DSM 12885]
 gi|315592991|gb|ADU52287.1| RNAse G [Thermaerobacter marianensis DSM 12885]
          Length = 565

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 150/527 (28%), Positives = 252/527 (47%), Gaps = 8/527 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+L++  + +   E  ++    G+V      ++      A  +   E  + +  
Sbjct: 11  PDETRVAVLEDDRLVEIYHERPSNQRVAGNVYKGKVENVLPGMQAAFVNIGLERNAFL-- 68

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
               V++       + +D      R   I +++   Q ++VQIVKE  GNKGA VT +L+
Sbjct: 69  ---YVADAVPRGEDAEDDDLPDDLRHAAITDLLHPGQEIIVQIVKEPTGNKGARVTRHLT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GR  VLMP         R       ++   +       P G G+I+RTA   R++ E+
Sbjct: 126 LPGRLLVLMPGVDYVGVSRRIHDEKERQR--LKQLAQSLQPPGAGLIVRTAAEGRSEAEL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D EYL RLW +++  A    AP L+Y +  L+ R +RD+   ++ E+ +     YR  
Sbjct: 184 RGDVEYLTRLWADIQRRARRERAPVLLYRDLGLVFRVVRDMLTPEVDEVWIDDPTEYRRM 243

Query: 322 KDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            D M          V         +F + GI  +++   +  V L S GY++I+QTEAL 
Sbjct: 244 LDLMAAFASPLRDRVHLYQNREAGLFEQYGINEEIERALKRRVWLKSGGYLVIDQTEALT 303

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVN+G+      + DT  +TN+EAA EIARQLRLRD+ G+IV+DFIDMEE  + + V 
Sbjct: 304 AIDVNTGKFVGSKNLADTVFRTNMEAAAEIARQLRLRDIGGIIVIDFIDMEEPSHRQRVV 363

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++L+  L +D  +  V  I++ GL+EM+R++ R S+LE  T+ C YC G G + S+ S A
Sbjct: 364 QELERHLARDHTKATVLGITSLGLVEMTRKKGRRSLLEQLTRECPYCDGRGRVLSEESAA 423

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
             + R ++  L    +  I+V  H  V   L+    A + E E   G S+ +    ++  
Sbjct: 424 RRVRREIKRILRHSASEAILVEVHPSVASLLIGAGGANLRELERETGRSVFIRGRDDVHL 483

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
           +   +      + +      V +  +     +      + + +  + 
Sbjct: 484 EAMNLVALGSREEVERQALPVHAGQRLELEVEERHATNEADGIARLE 530


>gi|311277792|ref|YP_003940023.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1]
 gi|308746987|gb|ADO46739.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1]
          Length = 489

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFAVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESEAERER-LKKVVTDYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     +    +F    +P  
Sbjct: 194 TKVMERKKRHQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTFDALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|113866934|ref|YP_725423.1| ribonuclease G and E [Ralstonia eutropha H16]
 gi|113525710|emb|CAJ92055.1| Ribonuclease G and E [Ralstonia eutropha H16]
          Length = 488

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 120/411 (29%), Positives = 199/411 (48%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              +        Q  I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P   
Sbjct: 75  HPRDADRNNSTPQLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDP 134

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 R             +   +      G I+RT     T  E+  D  YL ++W  
Sbjct: 135 HIGISQRIEGEVDREALRSRVQGLVPDDERGGFIVRTIAEEATDEELGNDIAYLRKIWGA 194

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +R+ A    AP+L+Y++ NL +R +RD        I +   + Y+   +F K   P+   
Sbjct: 195 IRQNATTLPAPNLLYQDLNLAQRVLRDFINDATGVIQIDSRENYQMLLEFAKEYTPAVLP 254

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    I+ +++      V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 255 RLSHYTGERPIFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            +DT  +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK +L +DR R+
Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKRALARDRTRI 374

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            V + S  GL+EM+R+R R S+     + C  C G G +++  +    ILR +     Q+
Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCHGKGQVKTPRTACYDILREIMRESRQF 434

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                 +    +V+   L ++   +       G  I++ +      + + I
Sbjct: 435 NPREFRILASQEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 485



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1  MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   +I HP
Sbjct: 60 IGLERAAFLHVADIWHP 76


>gi|260596136|ref|YP_003208707.1| ribonuclease G [Cronobacter turicensis z3032]
 gi|260215313|emb|CBA27270.1| Ribonuclease G [Cronobacter turicensis z3032]
          Length = 489

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK I        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESETERER-LKRIVADYCDEQG-GFIIRTAAEGVCEEDLSSDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    MP  
Sbjct: 194 TKVMERKKRHQTRYQLYGELALAQRVLRDFAVAQLDRIRVDSRLTYEMLLEFTAEYMPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 NCKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKSDESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|194288981|ref|YP_002004888.1| rnase g, ribonuclease g [Cupriavidus taiwanensis LMG 19424]
 gi|193222816|emb|CAQ68819.1| RNase G, ribonuclease G [Cupriavidus taiwanensis LMG 19424]
          Length = 488

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 121/411 (29%), Positives = 201/411 (48%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              +        Q  I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P   
Sbjct: 75  HPRDPDRNNATPQLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDP 134

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 R             +   +      G I+RT     T  E+  D  YL ++W  
Sbjct: 135 HIGISQRIEGEVDREALRSRVQGLVPADERGGFIVRTIAEEATDEELGNDIAYLRKIWGA 194

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +R+ A    AP+L+Y++ NL +R +RD        I +   + Y+   +F K   P+   
Sbjct: 195 IRQNATTLPAPNLLYQDLNLAQRVLRDFINDATGVIQIDSRENYQMLLEFAKEYTPAVLP 254

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    I+ +++      V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 255 RLSHYTGERPIFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            +DT  +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK +L +DR R+
Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKRALSRDRTRI 374

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            V + S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+
Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                 +    +V+   L ++   +       G  I++ +      + + I
Sbjct: 435 NPREFRILASQEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 485



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1  MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   +I HP
Sbjct: 60 IGLERAAFLHVADIWHP 76


>gi|254448574|ref|ZP_05062033.1| ribonuclease G [gamma proteobacterium HTCC5015]
 gi|198261763|gb|EDY86049.1| ribonuclease G [gamma proteobacterium HTCC5015]
          Length = 491

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 127/420 (30%), Positives = 206/420 (49%), Gaps = 2/420 (0%)

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
           +V D+          +   +  I EV++  Q +LVQ+VKE  G KGA +TT +++A RY 
Sbjct: 69  HVADIVEAHVPAAEGREASRRKIGEVLREGQNILVQVVKEPLGTKGARLTTQITVASRYL 128

Query: 208 VLMPNTSKGETISRKITNPVDRKNL-KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
           VLMP        ++        +          E     G I+RT     ++ +  +D  
Sbjct: 129 VLMPKDKSIGVSAKIEEESERERLRDLMSGLFPEDSLDFGYIVRTVAEGASEEDFLKDAR 188

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           +L RLW  + +    +    LV+++  L KR +RD+    +  I +     Y     F +
Sbjct: 189 FLDRLWKAISQRIDQAGTGELVHQDLPLEKRVLRDMAGVSLDRIRIDSADYYERMVQFSR 248

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
             +P    ++  Y+   PIF    +E ++      +V L S GY+II+QTEA+ +IDVN+
Sbjct: 249 KYVPDVESLLECYKAERPIFDLYAVEDEIQRALNRKVMLKSGGYLIIDQTEAMTTIDVNT 308

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           G       +E+T  +TNLEAA+ IARQLRLR+L G+I++DFIDM +  + R V + L+ +
Sbjct: 309 GSFVGHRNLEETTFRTNLEAAQTIARQLRLRNLGGIIILDFIDMVDPDHRRQVLRALERA 368

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
           L KD AR  V  +S  GL+EM+R+R R S+     + C  C+G+G +++  SV   I R 
Sbjct: 369 LDKDHARTHVCGVSELGLVEMTRKRTRESLEHVLCEPCAACEGSGSVKTAESVCYEIFRE 428

Query: 507 VEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +      + A   ++V  H  VV  L ++ R  + E      V I   +        + +
Sbjct: 429 ILRLSRTFDAQQQLLVLAHQSVVDLLTDELRDALAELSEEADVPIKFQVETLYHQGQYDV 488



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ S  +ETRV VL +  ++EL  E  H + +  NIY+ +V RV P ++AAF+D
Sbjct: 1  MSEEILINVS-PQETRVGVLENGVLQELYLERSHDRSVVNNIYMGRVERVMPGMEAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHVADI 73


>gi|322834698|ref|YP_004214725.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602]
 gi|321169899|gb|ADW75598.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602]
          Length = 489

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/413 (31%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E++   Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVARDEQKNFHVRDIAELVHQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK I        G G I+RTA     + E+K+D  YL RLW
Sbjct: 136 ASHVGVSQRIESEAERDR-LKRIVSEYCDEHG-GYIIRTAAEGVGEEELKQDAAYLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L  R +RD   + +  I V     Y    +F    MP  
Sbjct: 194 TKVMERKRRNKTKCKLYGELALAHRVLRDFAGEALDRIRVDSRLTYELLVEFTSEYMPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGKQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +EDT   TN EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLEDTIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C   G +++  +V   ILR +     
Sbjct: 374 KTGIHGFSALGLVEMTRKRTRESVEHVLCSDCPTCHARGTVKTVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+  + V   L  ++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASAAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|257092174|ref|YP_003165815.1| Rne/Rng family ribonuclease [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257044698|gb|ACV33886.1| ribonuclease, Rne/Rng family [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 484

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 117/410 (28%), Positives = 212/410 (51%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
              +     +    I+ ++   Q +LVQ++K+  G+KGA ++T +S+AGR  V +P  + 
Sbjct: 72  DIREPRSNDEPLRPIERLLFEGQSILVQVIKDPMGSKGARLSTQVSIAGRMLVYLPQDNH 131

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R           +++ R +      G I+RT   + T+ E+ +D E+L ++W ++
Sbjct: 132 IGISQRIERESEREALREKLHRLVPSDEKGGFIVRTMAENATEAELAKDIEFLRKIWRDI 191

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +  +  +  P L+Y+E +L +R +RD    + + I++   + +++   F     P+ A +
Sbjct: 192 QAQSTTAAPPSLLYQELSLAQRVLRDFVNPETARIVIDSRENFQKLTAFAGEYTPTVAPL 251

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F   G+E ++       V L S GY+II+QTEA+ +IDVN+G        
Sbjct: 252 LEHYIGERPLFDLHGVEDEIQKALARRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGVRNF 311

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G+I++DFIDME +++  +V  +  ++L +D  R+ 
Sbjct: 312 DDTIFKTNLEAAQTIARQLRLRNLGGIIIIDFIDMENEEHRMAVLSEFNKALARDHTRLT 371

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C G G +R+  +V   ILR +     Q+ 
Sbjct: 372 VNGFTALGLVEMTRKRTRESLAHVLCEECPTCGGRGEVRTARTVCYEILRELLREARQFD 431

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A    V     V+   L+++   +       G  I++      + + + I
Sbjct: 432 AREYRVLGSQAVIDRFLDEESQGLAMLSDFIGKPISLQAEPSYSQEQYDI 481



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +  +ETRV V     V+EL  E    +   GN+Y+ ++ R+ P +Q+AF+D
Sbjct: 1  MSEEILINFT-PQETRVAVTHQGVVQELHIERSASRGFVGNVYVGRIVRILPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   +I
Sbjct: 60 IGLDRTAFLHVADI 73


>gi|261342697|ref|ZP_05970555.1| ribonuclease G [Enterobacter cancerogenus ATCC 35316]
 gi|288315349|gb|EFC54287.1| ribonuclease G [Enterobacter cancerogenus ATCC 35316]
          Length = 489

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 122/413 (29%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFAVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA    ++ ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERERLKK--VVSAYCDEQGGFIIRTAAEGISEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             ++  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 PGLLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPSVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|332532331|ref|ZP_08408211.1| cytoplasmic axial filament protein CafA and ribonuclease G
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038198|gb|EGI74644.1| cytoplasmic axial filament protein CafA and ribonuclease G
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 490

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 137/484 (28%), Positives = 235/484 (48%), Gaps = 7/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E + +    G++ +     +      A F     E++    
Sbjct: 11  PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +D+V++   V+G          K+   I+E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 70  ASDIVNSASIVEGVDD----VPIKKVQDIRELVRQGQYIMVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           +  RY V MP+ +      R  T     +  K              I+RTA    ++ E+
Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERSRLKK--IVAEYGDENGSFIVRTAAEGASEAEL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  +L +LW+ +      +    +++E+  L  R +RD   +D+  I V  +  Y E 
Sbjct: 184 RHDAGFLRKLWEKITSRRRKTSKASILHEDLTLAFRTLRDYVGEDMERIRVDSKLSYEEL 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F +  +P  ++++  Y    PIF    +E ++      +VTL S GY+II+QTEA+ +
Sbjct: 244 KLFTEEFVPQLSQVLEYYPGERPIFDLFDVENEIQKALHRKVTLKSGGYIIIDQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVN+G       +E+T   TN+EA   IARQLRLR+L G+I++DFIDM  + + R V  
Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSEDHKRRVLH 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +L KDR +  +  +S  GL+EM+R+R R S+      VC  C G G  ++  +V  
Sbjct: 364 SLESALAKDRTKTNINGLSALGLVEMTRKRTRESLEHILCDVCPACSGRGSQKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR +      Y A   +V+    V   LLN +   + E E   G  +N+      + +
Sbjct: 424 EILREIVRVNRAYAADKFMVYAAPAVSEALLNDEYHNLAELELFIGKQVNIQTESLYSQE 483

Query: 562 LFYI 565
            F +
Sbjct: 484 QFDV 487


>gi|283788112|ref|YP_003367977.1| ribonuclease G (cytoplasmic axial filament protein) [Citrobacter
           rodentium ICC168]
 gi|282951566|emb|CBG91265.1| ribonuclease G (cytoplasmic axial filament protein) [Citrobacter
           rodentium ICC168]
          Length = 489

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK +        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESEAERER-LKRVVADYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|50119231|ref|YP_048398.1| ribonuclease G [Pectobacterium atrosepticum SCRI1043]
 gi|49609757|emb|CAG73191.1| ribonuclease G [Pectobacterium atrosepticum SCRI1043]
          Length = 489

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K +A         G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEVERDRLKKTVAD--YCDDDGGFIIRTAAEGIGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    + +   +Y E  L +R +RD     +  I +     Y    +F    +P  
Sbjct: 194 GKVMERKKRNQSKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            R +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEEHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  SV   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y     +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|303257998|ref|ZP_07344007.1| ribonuclease G [Burkholderiales bacterium 1_1_47]
 gi|330999411|ref|ZP_08323125.1| ribonuclease G [Parasutterella excrementihominis YIT 11859]
 gi|302859341|gb|EFL82423.1| ribonuclease G [Burkholderiales bacterium 1_1_47]
 gi|329574837|gb|EGG56396.1| ribonuclease G [Parasutterella excrementihominis YIT 11859]
          Length = 486

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 126/414 (30%), Positives = 223/414 (53%), Gaps = 5/414 (1%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                 ++      I+ ++ + Q++LVQ+ K+  G KGA +TT +SLAGR  V +P TS 
Sbjct: 71  DMRQAHQENGGTLPIERLLHDGQVVLVQVAKDPIGTKGARLTTEISLAGRLLVYLPYTSH 130

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGM---GVILRTAGASRTKIEIKRDFEYLMRLW 272
              +S+KI +  +R+ LKE    L    G+   G I+RT+G      +   D +YL +LW
Sbjct: 131 IG-VSQKIEDEAERERLKEAVAKLTEEQGIPKGGFIVRTSGEDAKPEDFVNDMKYLEKLW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++      + AP L+Y + ++ +R +RD+  +   +IIV   + + E + F K  +P  
Sbjct: 190 LDIEAKTHIAGAPCLLYSDVSISQRVLRDIVTEQTGKIIVDNPEVFEELQRFGKKFVPEA 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             ++  Y    P+F +  +E ++++     V L S GY+II+QTEA+ +IDVN+G     
Sbjct: 250 VELLELYNSERPLFDQYNLEKEIEASLSRRVDLKSGGYLIIDQTEAMTTIDVNTGAFVGR 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
               DT  +TNLEA++ IARQLRLR+L G+I+VDFIDM+ K++ + V  +L++++ +DR 
Sbjct: 310 RDFSDTIYKTNLEASQAIARQLRLRNLGGIIIVDFIDMDSKEHEQGVLTELRKAVARDRN 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R+ +   ++ GL++++R+R R S+  +  + C  C G G I++  +V   ILR V     
Sbjct: 370 RISISEFTSLGLVQITRKRTRESLAHTLCETCPTCGGRGEIKTARTVCYEILREVVREYH 429

Query: 513 QYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           Q+  A    +     V+   L+++   +          I + +  E   + + +
Sbjct: 430 QFKDAKEFRILASQSVIDLFLDEESEALALVGDSIQKPITLSVETEYNQEQYDV 483



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 4  KMLID-ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          ++LI+ A H  ETRV VL D  ++EL  E      + GNIYL  V +V P +Q+AFV+ G
Sbjct: 3  EILINNAVH--ETRVAVLEDGVLQELRIERNADVSLIGNIYLGVVGKVLPGMQSAFVEIG 60

Query: 63 GNRHGFLPFLEI 74
            R  FL   ++
Sbjct: 61 LPRAAFLHVSDM 72


>gi|152988375|ref|YP_001350427.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa PA7]
 gi|150963533|gb|ABR85558.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa PA7]
          Length = 485

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 216/399 (54%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G KGA +TT+LS+  RY V MP TS      R        
Sbjct: 84  ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  K   +      +    G ILRTA     + EI  D  YL RLWD +     +  AP 
Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQSIGAPS 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+ +L  R +RDL    I +I +   + +++   F++ LMP  +  +  Y    PIF
Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S GY+I++ TEA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+++   + C  C+G G +++  +    I R +      Y A + +V  +  
Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + + EA  G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  +V RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHAAEI 73


>gi|15599673|ref|NP_253167.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa PAO1]
 gi|107099938|ref|ZP_01363856.1| hypothetical protein PaerPA_01000959 [Pseudomonas aeruginosa PACS2]
 gi|116052509|ref|YP_792822.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296391187|ref|ZP_06880662.1| ribonuclease G [Pseudomonas aeruginosa PAb1]
 gi|313107063|ref|ZP_07793265.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 39016]
 gi|9950714|gb|AAG07865.1|AE004861_6 cytoplasmic axial filament protein [Pseudomonas aeruginosa PAO1]
 gi|115587730|gb|ABJ13745.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879767|gb|EFQ38361.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 39016]
          Length = 485

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G KGA +TT+LS+  RY V MP TS      R        
Sbjct: 84  ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  K   +      +    G ILRTA     + EI  D  YL RLWD +        AP 
Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+ +L  R +RDL    I +I +   + +++   F++ LMP  +  +  Y    PIF
Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S GY+I++ TEA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+++   + C  C+G G +++  +    I R +      Y A + +V  +  
Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + + EA  G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  +V RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHAAEI 73


>gi|283851984|ref|ZP_06369260.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. FW1012B]
 gi|283572708|gb|EFC20692.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. FW1012B]
          Length = 486

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 161/418 (38%), Positives = 245/418 (58%), Gaps = 3/418 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +  +    +         +  +   IQ+ +K  Q LLVQ+VKE  G+KGA +TT
Sbjct: 69  AERNGFLQIDEVHPEYYQIVHGGDRRPKYPPIQKALKKNQELLVQVVKEPTGHKGAFLTT 128

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSL GRY VL P   +   +SRKI +  +RK LKE   GL++  G+G+I+RTA  S++K
Sbjct: 129 YLSLPGRYFVLTPGREQRG-VSRKIEDEAERKRLKEAIAGLKLEEGLGIIVRTAALSQSK 187

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             ++RD  YL RLW +VR+    +  P L+Y+E +L  RA+RD    D+ EI V   +  
Sbjct: 188 TSLERDLSYLKRLWKDVRQRGTTAETPSLIYQELDLSSRAVRDYLTDDVGEIWVDEPETA 247

Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
               +   L+ P    IV+Q+ +   P++ R  +  Q++ L+  EVTLPS G +  + TE
Sbjct: 248 GRVAEMATLVYPRRPGIVKQHTDMDTPLWDRFNLRKQIEQLYGREVTLPSGGVLAFDHTE 307

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL ++D+NSG+   E    + AL+TN+EAAEE+ARQLRLRD+ G +V+DFI+M+++K+  
Sbjct: 308 ALTAVDINSGKIGGESNFREMALKTNVEAAEEVARQLRLRDIGGQVVIDFIEMKDRKHVA 367

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK L+ + K DRAR  VG +S FGLLE+ RQR+ SS L  T++ C +C+G+G  R+  
Sbjct: 368 EVEKTLRAAFKNDRARTDVGRVSRFGLLEIVRQRLGSSALSITSETCPHCRGSGQRRNHE 427

Query: 498 SVALSILRSVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             AL++L+ +   + + +    +      ++ LYLLN KRA +   E  F   I +  
Sbjct: 428 WQALTVLKDIYRQMRKDSGLECVTAKVSEELALYLLNSKRARLSALEEEFKKKIVITA 485



 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 48/78 (61%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          KM I     E+  V V  D  + E   E  H+ + +G+IY  K+  ++P+LQAAF++YG 
Sbjct: 10 KMFISVLPGEQVEVAVAEDGLLLEYYVEMVHQAKTRGHIYKGKIHNIDPALQAAFINYGA 69

Query: 64 NRHGFLPFLEIHPDYYQI 81
           R+GFL   E+HP+YYQI
Sbjct: 70 ERNGFLQIDEVHPEYYQI 87


>gi|292490677|ref|YP_003526116.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4]
 gi|291579272|gb|ADE13729.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4]
          Length = 490

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 216/398 (54%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I  ++   Q +LVQ++K+  G KGA +TT +S+A RY V MP  S      +      
Sbjct: 90  PSITSLLSEGQEVLVQVIKDPIGTKGARLTTQISVASRYLVYMPEMSGIGVSLKIEDEEE 149

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            ++    +A  L      G I+RT        E++ D E+L RLW  ++E +    A  +
Sbjct: 150 RQRLKNLLASILLEDDQGGYIIRTVAEGAIADELQTDMEFLHRLWRTIKERSQTVKAGRV 209

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           V+E+ +L+ R +RDL  + +  + V   + Y +  DF +  +P     +  Y+   PIF 
Sbjct: 210 VHEDLSLVMRTMRDLVHERVERVRVDSRETYHKLVDFAEHFVPELLATLEYYQGERPIFD 269

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             GIE ++      +V L S GY+II+QTEA+ +IDVN+G       +E+T  +TNLEAA
Sbjct: 270 LYGIEDEIQKSLGRKVQLKSGGYLIIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNLEAA 329

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + I RQLRLR+L G+I++DFIDMEE+ + R V + L++ L+KD A+  +  +S+ GL+EM
Sbjct: 330 QAICRQLRLRNLGGIIIIDFIDMEEEDHKRQVLRALEKGLEKDHAKTHISEVSSLGLVEM 389

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+ +   + C  C G G +++  +V   ILR +     Q+ A   +V    +V
Sbjct: 390 TRKRTRESLEQILCETCPTCGGRGTVKTVETVCYEILREILREARQFEASQYLVIAAQEV 449

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  L++++ A++ E EA  G  I     +    + F +
Sbjct: 450 VDRLMDEESASVAELEAFIGKPIKFQAELLYMREQFDV 487



 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV V+ +  V+EL  E   ++   G+IY  +V+R+ P +QAAFVD
Sbjct: 1  MSEEILINVT-PSETRVAVVENGVVQELYIERSSRRGWVGSIYKGRVSRILPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHASDI 73


>gi|126662499|ref|ZP_01733498.1| Ribonuclease G [Flavobacteria bacterium BAL38]
 gi|126625878|gb|EAZ96567.1| Ribonuclease G [Flavobacteria bacterium BAL38]
          Length = 538

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 249/566 (43%), Gaps = 66/566 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHK-KQIKGNIYLAKVTRVEPSLQAAFV 59
           M  +++I  S  +     +L+D ++ EL  E E +     G+I++AK+ +    L AAFV
Sbjct: 23  MNKELII-RSGSDAVDFALLKDGKLIELHKEEEKQSNFAVGDIFIAKIRKPVAGLNAAFV 81

Query: 60  DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
           + G  +  FL + ++ P                      +  ++   +         D+S
Sbjct: 82  NLGHEKDAFLHYHDLGP----------------------NLPSLTKFIKLVSAGKIKDYS 119

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
           L+     A   ++     I+SAN  V                                  
Sbjct: 120 LKNFPFEAEIDKDGSINDILSANQSV---------------------------------- 145

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
            LVQ+VKE    KG  +++ +SLAGRY VL+P + +     +  +     +  +      
Sbjct: 146 -LVQVVKEPISTKGPRISSEISLAGRYVVLVPFSDRVSVSQKIESREEKDRLKR--LVQS 202

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
             P G GVI+RT    +   E+ +D + L+  W  +      +  P  V  E N     +
Sbjct: 203 IKPKGFGVIVRTVAEGKKVAELDKDLQTLLDRWSAMSRRLQTAHHPSKVLGELNKASSIL 262

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH-PIFFRSGIEVQLDSL 358
           RD++    + I V  E  Y E K++++ + P    IV+ Y+    P+F +  IE Q+ + 
Sbjct: 263 RDVFNDTFTGIYVDDEDLYLETKEYLQEIAPDKVSIVKHYQSKDLPLFEKYNIERQIKTS 322

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLR 417
               V++    Y+II  TEAL  IDVNSG RS++    E TAL+ N+ AA EIARQLRLR
Sbjct: 323 FGKTVSMSKGAYLIIEHTEALHVIDVNSGNRSSKATSQEGTALEVNMIAAAEIARQLRLR 382

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           D+ G+IVVDFIDM+  +N + +   L+E +  D+A+ ++   S FGL++++RQR+R  V 
Sbjct: 383 DMGGIIVVDFIDMQNPENRKVLYDFLREEMSDDKAKHKILPPSKFGLIQITRQRVRPEVN 442

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
             T +     +    I +   +   I   +E  +       ++++ H  V  YL     +
Sbjct: 443 IKTREEDPNNEHR-EIEAPILIVDKIATDLERII--KDHKKVVLNVHPFVAAYLSKGFPS 499

Query: 538 TIVEYEARFGVSINVVIGIELADKLF 563
              ++   +   + ++         +
Sbjct: 500 LRSKWFFEYKKWVKIIPRDAYTYLEY 525


>gi|325918723|ref|ZP_08180818.1| RNAse G [Xanthomonas vesicatoria ATCC 35937]
 gi|325535066|gb|EGD06967.1| RNAse G [Xanthomonas vesicatoria ATCC 35937]
          Length = 499

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 217/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKIVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W  V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWTVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  KD+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRKDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|319787817|ref|YP_004147292.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1]
 gi|317466329|gb|ADV28061.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1]
          Length = 495

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 219/397 (55%), Gaps = 2/397 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  S+   +S +I +  +R
Sbjct: 97  IVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSRTVGVSARIEDEAER 155

Query: 230 KNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           + LK I   L    G  G I+RT    +    +  D  YL R+W+ V      + A  ++
Sbjct: 156 QRLKTIVSDLAASHGGHGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPAGTII 215

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           YE+ +L  R++RDL  KD+ ++ V     Y   + F+   MP  A  +  Y    PIF  
Sbjct: 216 YEDLSLPLRSVRDLIRKDVEKVRVDSRDTYDRLQAFVAKYMPVLAEKLELYSGDRPIFDL 275

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            G+E ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+
Sbjct: 276 YGVEDEIGRALDKQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVYRTNLEAAQ 335

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            +ARQLRLR+L G+I++DFIDM + ++ R V + L++SL +D A+  V   S  GL+EM+
Sbjct: 336 AVARQLRLRNLGGIIIIDFIDMTDPEHRRQVLRTLEKSLARDHAKTTVYDFSPLGLVEMT 395

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+R   S+    ++ C  C G G +++  +V   I R +   + Q+ A  ++V     VV
Sbjct: 396 RKRTVESLERQLSETCPQCGGRGSVKTAETVTYEIFREITRAVRQFEAARLLVIASPKVV 455

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +  ++ A + E E   G SI      +   + F +
Sbjct: 456 ARITEEESAAVAELEEFLGKSIRFQADEQYLQEQFDV 492



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  +V RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVVENGMLQELHIERGWRRGVVGNIYKGRVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|149189082|ref|ZP_01867370.1| ribonuclease G [Vibrio shilonii AK1]
 gi|148837045|gb|EDL53994.1| ribonuclease G [Vibrio shilonii AK1]
          Length = 489

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  KK  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAENEKKQFQVRDISELVRQGQDIIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEEERNR--LKNVVADYCDENGGFIIRTAAEGANEKELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E          +Y E  L  R +RD    +I+ + V     +   K+F    +P  
Sbjct: 194 TKINERRTKYKTRSTLYGELGLAHRILRDFVGTEITRVQVDSRLIFESLKEFTSEFVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             ++  YE   PIF     E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 ESLLELYEGDKPIFDMYDTENEIQRSLERKVDLKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ + V   L+ +L KDR 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMGLEEHRQRVLNSLEGALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSGCPTCEGRGSVKTVETVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   + +    V   L   +   + E E   G  + +        + F +
Sbjct: 434 AYDADKFVAYASPAVAEALEGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486


>gi|116623271|ref|YP_825427.1| ribonuclease [Candidatus Solibacter usitatus Ellin6076]
 gi|116226433|gb|ABJ85142.1| ribonuclease, Rne/Rng family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 913

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 145/494 (29%), Positives = 246/494 (49%), Gaps = 4/494 (0%)

Query: 73  EIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132
           +  P+  +IP S   A L+E         +            P+   L E          
Sbjct: 422 DEGPEPARIPTS-LTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPR 480

Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
            +E       +       + +  +  D          I +++K  Q ++VQI KE  G K
Sbjct: 481 PQEGRPEQRTSPRPEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQK 540

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GA +T++++L GR+ V MP         +  ++    + LK I +        G I+RTA
Sbjct: 541 GARITSHIALPGRFLVYMPTVDHIGVSRKIPSDDERLR-LKRILQTNRTGIPGGYIVRTA 599

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           G  RT+ E++ D  +L  LW ++R+ A    AP L++ + N+++R +RD        + V
Sbjct: 600 GDGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHHDLNVVERILRDQLTSSYKSVWV 659

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
             E+ Y     F++   P+    V+ Y    PIF   GI  +L+   + +V L S GY++
Sbjct: 660 DNEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIV 719

Query: 373 INQTEALVSIDVNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431
           INQTEALV+ID+N+G+   +    EDT ++TN +A +EI RQ+RLRDL G+IVVDFIDM+
Sbjct: 720 INQTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMD 779

Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
           E+KN + V + L+E+++ DRA  ++   ++FGL+ ++R+R++ S+  +    C YC+GAG
Sbjct: 780 ERKNRQKVMQALEEAMRADRAPYKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAG 839

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
           Y++S  +V   IL+   +        N+++    +V   L + +   + E E   G  + 
Sbjct: 840 YVKSPQTVVGEILQEAHKIARAVD-GNVMLRVAPEVAKLLKSNQNTFLQEVEEILGRPVI 898

Query: 552 VVIGIELADKLFYI 565
           V     L  + F +
Sbjct: 899 VKSDPLLHQEKFDL 912



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +++I A+   ETRV V+ +++V E+  + E++  + G+I+  +VTRV P +Q+AFVD
Sbjct: 1   MSKELIISATR-HETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVD 59

Query: 61  YGGNRHGFLPFLEIHPD---YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIP 115
            G  R  FL   +   D   Y +I  S  + +LK   +        A + T  +V   
Sbjct: 60  IGLGRDAFLYVSDFFEDNDEYDKIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGT 117


>gi|317494223|ref|ZP_07952639.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917996|gb|EFV39339.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 489

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 193/413 (46%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R        +   +           G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIEGEAERNR--LKSIVSEYCDEQGGFIIRTAAEGIDDEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L  R +RD     +  I V     +    +F +  +P  
Sbjct: 194 TKVMERKRRNKTKCKLYGELALAHRVLRDFAGAALDRIRVDSRLNFDSLTEFTREYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++       V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLELYAGKQPIFDLYDVENEIQRSLDRRVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDRA
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSSEDHRRRVLHSLEQALSKDRA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCSDCPTCRGRGTVKTVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L +++  ++ E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E K+ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIERESKRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|253686661|ref|YP_003015851.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753239|gb|ACT11315.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 489

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     Y    +F    +P  
Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            R +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN EA + IARQLRLR+L G+I++DFIDM    + R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNDDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  SV   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y     +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDTDRFLVYASPAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|300991031|ref|ZP_07179452.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
 gi|300406952|gb|EFJ90490.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
          Length = 489

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGGEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|73542214|ref|YP_296734.1| RNAse G [Ralstonia eutropha JMP134]
 gi|72119627|gb|AAZ61890.1| RNAse G [Ralstonia eutropha JMP134]
          Length = 486

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/405 (29%), Positives = 200/405 (49%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
           P K   Q  I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         
Sbjct: 79  PDKNGTQLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDPHIGISQ 138

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           R             +   +      G I+RT     +  E+  D  YL ++W  +R+ A 
Sbjct: 139 RIEGEVDREALRSRVQGLVPADERGGFIVRTIAEEASDEELGNDIAYLRKIWATIRQNAT 198

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
              AP L+Y++ +L +R +RD        I +   + Y+   +F +   P+    +  Y 
Sbjct: 199 TQPAPSLLYQDLDLAQRVLRDFINDATGVIQIDSRENYQRLVEFAQEYTPAVLARLSHYT 258

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
              PIF    I+ +++      V L S GY++I+QTEA+ +IDVN+G        +DT  
Sbjct: 259 GERPIFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIF 318

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK +L +DR R+ V   S
Sbjct: 319 KTNLEAAHTIARQLRLRNLGGIIIIDFIDMENVEHREAVLSELKRALSRDRTRITVNNFS 378

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
             GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+      
Sbjct: 379 QLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFR 438

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +    +V+   L ++   +       G  I++ +      + + I
Sbjct: 439 ILASQEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 483



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1  MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   +I HP
Sbjct: 60 IGLERAAFLHVADIWHP 76


>gi|261819621|ref|YP_003257727.1| ribonuclease G [Pectobacterium wasabiae WPP163]
 gi|261603634|gb|ACX86120.1| ribonuclease, Rne/Rng family [Pectobacterium wasabiae WPP163]
          Length = 489

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     Y    +F    +P  
Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            R +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  SV   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y     +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|313902188|ref|ZP_07835596.1| RNAse G [Thermaerobacter subterraneus DSM 13965]
 gi|313467523|gb|EFR63029.1| RNAse G [Thermaerobacter subterraneus DSM 13965]
          Length = 566

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 136/443 (30%), Positives = 228/443 (51%), Gaps = 3/443 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           R   I ++++  Q ++VQI KE  G KGA VT +L+L GR  VLMP  +      R    
Sbjct: 91  RHAAITDILRPGQEIIVQITKEPTGTKGARVTRHLTLPGRLLVLMPGVNYVGVSRRIHDE 150

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++   +       PAG G+I+RTA   R++ E++ D  YL RLW ++++ A    AP
Sbjct: 151 KERQR--LKQLAQELQPAGAGLIVRTAAEGRSEAELRGDVAYLTRLWADIQQRARRQRAP 208

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHP 344
            L+Y +  L+ R +RD+   ++ ++++     YR   D M          V+        
Sbjct: 209 VLLYRDLGLVFRVVRDMLTPEVDQVLIDDPGEYRRVLDLMAAFATPLRDRVQLYQNREIS 268

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F + G+  +++   +  V L S GY++I+QTEAL +IDVN+G+      + DT  +TN+
Sbjct: 269 LFEQFGVNEEIERALKRRVWLKSGGYLVIDQTEALTAIDVNTGKFVGSKNLADTVFRTNM 328

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA EIARQLRLRD+ G+IV+DFIDMEE  + + V ++L+  L +D  +  V  I+  GL
Sbjct: 329 EAAAEIARQLRLRDIGGIIVIDFIDMEEPAHRQRVVQELERHLARDHTKATVLGITALGL 388

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R++ R S+LE  T+ C YC+G G + S+ S A  + R ++  L    +  I+V  H
Sbjct: 389 VEMTRKKGRRSLLEQLTRECPYCEGRGRVLSEESAARRVRREIKRILRHSPSEAILVEVH 448

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
             V   L+    A + E E   G S+ +    ++  +  ++      + +      V + 
Sbjct: 449 PSVASLLIGAGGANLRELERETGRSVFIRGREDVHLEAMHLVALGSREEVERQALPVHAG 508

Query: 585 SQAPSYDKNIECVWQDEALLPIP 607
            +     +      Q + +  + 
Sbjct: 509 QRLELEVEERHASNQADGIARLE 531



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L+     +ETRV VL D R+ E+  E    +++ GNIY  +V  V P +QAAFV+
Sbjct: 1  MNKSILVTV-EPDETRVAVLEDGRLVEIYHERPSTQRVAGNIYKGRVENVLPGMQAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R+ FL   +  P
Sbjct: 60 IGLERNAFLYVADAVP 75


>gi|260912971|ref|ZP_05919456.1| ribonuclease G [Pasteurella dagmatis ATCC 43325]
 gi|260632961|gb|EEX51127.1| ribonuclease G [Pasteurella dagmatis ATCC 43325]
          Length = 491

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 128/414 (30%), Positives = 211/414 (50%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                E+  +K      I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVEESEQKQFVVKDIAELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+   L    G G I+RTA    T+ E+K+D ++L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAAEGATEDELKQDADFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD     + +I +  +  + E K F +  MP+ 
Sbjct: 195 RKVLERRGKYQTKSMLYGELALTQRILRDFIGAGLEKIRIDSKLCFTEVKQFTEEFMPTL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    P+F   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 VDKLVLYSGNQPLFDVYGVETAIHTALNKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+   +   V + L+E+L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDDHRNRVLESLQEALSKDRV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C+G G I++  ++   I+R +     
Sbjct: 375 KTSVNGFTQLGLVEMTRKRTRESLEHVLCGDCPSCQGRGRIKTVETICYEIMREIIRVHH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++    + E E   G  I +   +    + F +
Sbjct: 435 LFSSEQFVVYASRAVADYLINEESHGLLAELEVFIGKQIQIKTEVYYNQEQFDV 488


>gi|227327944|ref|ZP_03831968.1| ribonuclease G [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 489

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGVGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     Y    +F    +P  
Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            R +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  SV   I+R +     
Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y     +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|307129047|ref|YP_003881063.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Dickeya
           dadantii 3937]
 gi|306526576|gb|ADM96506.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Dickeya
           dadantii 3937]
          Length = 489

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVADYCDEQG-GFIIRTAAEGVGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L  R +RD     +  I V  +  Y    +F    +P  
Sbjct: 194 TKVMERKKRNQTKCKLYGELALAHRILRDFAGASLDRIRVDSKLTYDSLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMGNEEHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCHGRGSVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASPAVGDALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|226227106|ref|YP_002761212.1| ribonuclease G [Gemmatimonas aurantiaca T-27]
 gi|226090297|dbj|BAH38742.1| ribonuclease G [Gemmatimonas aurantiaca T-27]
          Length = 520

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 139/398 (34%), Positives = 214/398 (53%), Gaps = 1/398 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             IQ+++K  Q +LVQI KE    KG  VT  +SLAGR+ V MP  SK     +      
Sbjct: 108 RPIQDLLKRGQEILVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSE 167

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            ++ L+ +   +      GVI+RT     TK   +R+ + L+  W  ++     + AP L
Sbjct: 168 RQR-LRAMVGEMLPDDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSL 226

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           V+ E N+ +  +RDL+   +  + V  ++ Y E  ++++ + P     V+ YE+  P+F 
Sbjct: 227 VHRETNVTRGLVRDLFSAKVERVQVDSKQVYNEITEYLQGIAPELVERVKLYEENVPLFD 286

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
           + GIE ++  L +    LPS GY+I   TEALVSIDVNSGR T +   E T L+TN EAA
Sbjct: 287 KEGIETEIRDLFKRRCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAA 346

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
            EIARQLRLRD+ G+IV DFIDME + N   V  +L+  L +DRAR +  A+S+ GL+EM
Sbjct: 347 REIARQLRLRDVGGIIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEM 406

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +RQR+R S   S T+ C  C G G + +  ++     R+V     +     +++  H +V
Sbjct: 407 TRQRVRQSHWHSMTEGCPTCSGTGRVFTPETIVRRTERAVRRMAAEGRKEPVVLRLHPEV 466

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            L++L Q+   +   E   G ++ +     L      +
Sbjct: 467 ALHVLEQEHDFMKRLEKMAGFTLELRDDPLLKPDEIKL 504


>gi|294666081|ref|ZP_06731340.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604140|gb|EFF47532.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 499

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|254446552|ref|ZP_05060028.1| ribonuclease, Rne/Rng family [Verrucomicrobiae bacterium DG1235]
 gi|198260860|gb|EDY85168.1| ribonuclease, Rne/Rng family [Verrucomicrobiae bacterium DG1235]
          Length = 582

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 234/447 (52%), Gaps = 14/447 (3%)

Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
             +     ++ +VV      KG     +P K      I         +++QI K   G K
Sbjct: 138 DIQPQEADSSIEVVRVNSSRKGKKQAKIPLKE-----IPNHYPIGTEIVIQITKGPIGTK 192

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           G   TT LS+ GR+ VL+P++ +   ISRKI +  +R+ LK+I R L +P GMG+I+RTA
Sbjct: 193 GPRSTTNLSIPGRFIVLVPHSDQCG-ISRKIEDNKERQRLKKIIRDLTIPEGMGIIVRTA 251

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
           G  +      RD   L++ W+ +++   ++ AP  +Y+E +L +R +RD   +DI  +++
Sbjct: 252 GEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTEDIDRVLI 311

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
             E+ +    + +  +       ++ Y+D  PIF R  IE Q++   Q +V LPS G ++
Sbjct: 312 DNEEDHGRISETVAQISKRSTSKIQLYQDSIPIFERYNIEKQIEQTFQRQVPLPSGGAIV 371

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           I +TEAL++IDVN+G         DT  Q N EAAEE+ARQ+RLR++ GLI++DFIDM++
Sbjct: 372 IEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIIIDFIDMKQ 431

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           +++  ++  ++++++  D+A+  +  IS  G+++M+RQR++ SV       C YC+G G 
Sbjct: 432 RRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCPYCRGKGI 491

Query: 493 IRSQSSVALSILRSVEEYLLQYTAH--------NIIVHTHSDVVLYLLNQKRATIVEYEA 544
           ++S ++V++ + R +   + +             + +  +  ++  L  +    ++  E 
Sbjct: 492 VKSGTTVSVELQRKLSGIIRRARNRTPDLAKPIKLRILVNPAIIDRLREEDADLLISLEK 551

Query: 545 RFGVSINVVIGIELADKLFYIEKGSPV 571
            +   +          + + +      
Sbjct: 552 DYNAQLTFRADPNFHVENYRVIDVETG 578


>gi|270263284|ref|ZP_06191554.1| hypothetical protein SOD_d03010 [Serratia odorifera 4Rx13]
 gi|270042972|gb|EFA16066.1| hypothetical protein SOD_d03010 [Serratia odorifera 4Rx13]
          Length = 489

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 201/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 AAHVGVSQRIESEAERER-LKKAVSAYCDELG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L  R +RD     +  I +   + + +  +F    +P  
Sbjct: 194 TKVMERKKRNQTKYKLYGELALAHRILRDFAGAALDRIRIDSRQTHDQLVEFTGEYIPDI 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLELYVGKQPIFDLYDVENEVQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDEHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHVLCHDCPTCNGRGTVKTVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+  + V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|227114035|ref|ZP_03827691.1| ribonuclease G [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 489

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGVGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L  R +RD     +  I +     Y    +F    +P  
Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAHRILRDFAGAALDRIRIDSRLTYEALLEFTGEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            R +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  SV   I+R +     
Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y     +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|15602207|ref|NP_245279.1| ribonuclease G [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720583|gb|AAK02426.1| CafA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 491

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 128/414 (30%), Positives = 210/414 (50%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                E+  +K      I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVEESEQKQFVVKDIAELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+   L    G G I+RTA    T+ E+K+D ++L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAADGATEEELKQDADFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD     + +I +  +  + E K F +  MP+ 
Sbjct: 195 RKVLERRAKYPTKSMLYGELALTQRILRDFIGAGLEKIRIDSKLCFTEVKQFTEEFMPTL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    P+F   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 VDKLVLYSGNQPLFDVYGVEAAIQTALNKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+   +   V + L+E+L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDDHRVRVLESLQEALSKDRV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C+G G I++  +V   I+R +     
Sbjct: 375 KTSVNGFTQLGLVEMTRKRTRESLEHVLCGDCPACEGRGRIKTVETVCYEIMREIIRVHH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   +V+    V  YL+N++    + E E   G  + +   +    + F +
Sbjct: 435 LFASEQFVVYASRAVADYLINEESHGLLAELEVFIGKQVQIKTEVYYNQEQFDV 488



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETR+ ++    ++E+  E + K+ I GNIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PSETRIALVDMGILKEVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|15833373|ref|NP_312146.1| ribonuclease G [Escherichia coli O157:H7 str. Sakai]
 gi|30064578|ref|NP_838749.1| ribonuclease G [Shigella flexneri 2a str. 2457T]
 gi|56480297|ref|NP_709042.2| ribonuclease G [Shigella flexneri 2a str. 301]
 gi|89110008|ref|AP_003788.1| ribonuclease G [Escherichia coli str. K-12 substr. W3110]
 gi|90111563|ref|NP_417713.2| ribonuclease G [Escherichia coli str. K-12 substr. MG1655]
 gi|110643481|ref|YP_671211.1| ribonuclease G [Escherichia coli 536]
 gi|117625530|ref|YP_858853.1| ribonuclease G [Escherichia coli APEC O1]
 gi|157159301|ref|YP_001464719.1| ribonuclease G [Escherichia coli E24377A]
 gi|157162724|ref|YP_001460042.1| ribonuclease G [Escherichia coli HS]
 gi|161367512|ref|NP_289814.2| ribonuclease G [Escherichia coli O157:H7 EDL933]
 gi|161486100|ref|NP_755867.2| ribonuclease G [Escherichia coli CFT073]
 gi|161950030|ref|YP_404903.2| ribonuclease G [Shigella dysenteriae Sd197]
 gi|161984856|ref|YP_409471.2| ribonuclease G [Shigella boydii Sb227]
 gi|161986436|ref|YP_312195.2| ribonuclease G [Shigella sonnei Ss046]
 gi|162138361|ref|YP_542652.2| ribonuclease G [Escherichia coli UTI89]
 gi|168752141|ref|ZP_02777163.1| ribonuclease G [Escherichia coli O157:H7 str. EC4113]
 gi|168754228|ref|ZP_02779235.1| ribonuclease G [Escherichia coli O157:H7 str. EC4401]
 gi|168763783|ref|ZP_02788790.1| ribonuclease G [Escherichia coli O157:H7 str. EC4501]
 gi|168769102|ref|ZP_02794109.1| ribonuclease G [Escherichia coli O157:H7 str. EC4486]
 gi|168777641|ref|ZP_02802648.1| ribonuclease G [Escherichia coli O157:H7 str. EC4196]
 gi|168781390|ref|ZP_02806397.1| ribonuclease G [Escherichia coli O157:H7 str. EC4076]
 gi|168786132|ref|ZP_02811139.1| ribonuclease G [Escherichia coli O157:H7 str. EC869]
 gi|168800958|ref|ZP_02825965.1| ribonuclease G [Escherichia coli O157:H7 str. EC508]
 gi|170018510|ref|YP_001723464.1| ribonuclease G [Escherichia coli ATCC 8739]
 gi|170082777|ref|YP_001732097.1| ribonuclease G [Escherichia coli str. K-12 substr. DH10B]
 gi|170679965|ref|YP_001745518.1| ribonuclease G [Escherichia coli SMS-3-5]
 gi|187730668|ref|YP_001881637.1| ribonuclease G [Shigella boydii CDC 3083-94]
 gi|188491981|ref|ZP_02999251.1| ribonuclease G [Escherichia coli 53638]
 gi|191168164|ref|ZP_03029960.1| ribonuclease G [Escherichia coli B7A]
 gi|191173813|ref|ZP_03035334.1| ribonuclease G [Escherichia coli F11]
 gi|193065333|ref|ZP_03046404.1| ribonuclease G [Escherichia coli E22]
 gi|193070331|ref|ZP_03051274.1| ribonuclease G [Escherichia coli E110019]
 gi|194429091|ref|ZP_03061621.1| ribonuclease G [Escherichia coli B171]
 gi|194434884|ref|ZP_03067130.1| ribonuclease G [Shigella dysenteriae 1012]
 gi|194439213|ref|ZP_03071294.1| ribonuclease G [Escherichia coli 101-1]
 gi|195939444|ref|ZP_03084826.1| ribonuclease G [Escherichia coli O157:H7 str. EC4024]
 gi|208805618|ref|ZP_03247955.1| ribonuclease G [Escherichia coli O157:H7 str. EC4206]
 gi|208812414|ref|ZP_03253743.1| ribonuclease G [Escherichia coli O157:H7 str. EC4045]
 gi|208818502|ref|ZP_03258822.1| ribonuclease G [Escherichia coli O157:H7 str. EC4042]
 gi|209396614|ref|YP_002272709.1| ribonuclease G [Escherichia coli O157:H7 str. EC4115]
 gi|209920717|ref|YP_002294801.1| ribonuclease G [Escherichia coli SE11]
 gi|215488555|ref|YP_002330986.1| ribonuclease G [Escherichia coli O127:H6 str. E2348/69]
 gi|217326701|ref|ZP_03442784.1| ribonuclease G [Escherichia coli O157:H7 str. TW14588]
 gi|218555810|ref|YP_002388723.1| ribonuclease G [Escherichia coli IAI1]
 gi|218560308|ref|YP_002393221.1| ribonuclease G [Escherichia coli S88]
 gi|218691528|ref|YP_002399740.1| ribonuclease G [Escherichia coli ED1a]
 gi|218696945|ref|YP_002404612.1| ribonuclease G [Escherichia coli 55989]
 gi|218702013|ref|YP_002409642.1| ribonuclease G [Escherichia coli IAI39]
 gi|218706860|ref|YP_002414379.1| ribonuclease G [Escherichia coli UMN026]
 gi|227887961|ref|ZP_04005766.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Escherichia coli 83972]
 gi|238902347|ref|YP_002928143.1| ribonuclease G [Escherichia coli BW2952]
 gi|253771924|ref|YP_003034755.1| ribonuclease G [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163183|ref|YP_003046291.1| ribonuclease G [Escherichia coli B str. REL606]
 gi|254795189|ref|YP_003080026.1| ribonuclease G [Escherichia coli O157:H7 str. TW14359]
 gi|256018840|ref|ZP_05432705.1| ribonuclease G [Shigella sp. D9]
 gi|256024180|ref|ZP_05438045.1| ribonuclease G [Escherichia sp. 4_1_40B]
 gi|260846053|ref|YP_003223831.1| ribonuclease G [Escherichia coli O103:H2 str. 12009]
 gi|260857366|ref|YP_003231257.1| ribonuclease G [Escherichia coli O26:H11 str. 11368]
 gi|260869990|ref|YP_003236392.1| ribonuclease G [Escherichia coli O111:H- str. 11128]
 gi|261228251|ref|ZP_05942532.1| RNase G [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255107|ref|ZP_05947640.1| ribonuclease G [Escherichia coli O157:H7 str. FRIK966]
 gi|291284614|ref|YP_003501432.1| Ribonuclease G [Escherichia coli O55:H7 str. CB9615]
 gi|293406849|ref|ZP_06650775.1| ribonuclease G [Escherichia coli FVEC1412]
 gi|293412614|ref|ZP_06655337.1| ribonuclease [Escherichia coli B354]
 gi|293416670|ref|ZP_06659309.1| ribonuclease G [Escherichia coli B185]
 gi|293449571|ref|ZP_06663992.1| ribonuclease G [Escherichia coli B088]
 gi|297519112|ref|ZP_06937498.1| ribonuclease G [Escherichia coli OP50]
 gi|298382590|ref|ZP_06992187.1| ribonuclease G [Escherichia coli FVEC1302]
 gi|300817502|ref|ZP_07097718.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
 gi|300824398|ref|ZP_07104512.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
 gi|300898014|ref|ZP_07116386.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
 gi|300904439|ref|ZP_07122285.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
 gi|300917435|ref|ZP_07134100.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
 gi|300928720|ref|ZP_07144238.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
 gi|300937360|ref|ZP_07152196.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
 gi|300948326|ref|ZP_07162435.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
 gi|300958276|ref|ZP_07170422.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
 gi|300979741|ref|ZP_07174691.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
 gi|301022183|ref|ZP_07186100.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
 gi|301028271|ref|ZP_07191532.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
 gi|301047910|ref|ZP_07194957.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
 gi|301304290|ref|ZP_07210404.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
 gi|301326317|ref|ZP_07219688.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
 gi|301645523|ref|ZP_07245457.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
 gi|306816419|ref|ZP_07450551.1| ribonuclease G [Escherichia coli NC101]
 gi|307139934|ref|ZP_07499290.1| ribonuclease G [Escherichia coli H736]
 gi|307314995|ref|ZP_07594583.1| ribonuclease, Rne/Rng family [Escherichia coli W]
 gi|309785572|ref|ZP_07680203.1| ribonuclease G [Shigella dysenteriae 1617]
 gi|309793823|ref|ZP_07688249.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
 gi|312968423|ref|ZP_07782632.1| ribonuclease G [Escherichia coli 2362-75]
 gi|312972484|ref|ZP_07786658.1| ribonuclease G [Escherichia coli 1827-70]
 gi|331659526|ref|ZP_08360468.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA206]
 gi|331664854|ref|ZP_08365759.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA143]
 gi|331670069|ref|ZP_08370914.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA271]
 gi|331684887|ref|ZP_08385479.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli H299]
 gi|71162356|sp|P0A9J2|RNG_ECO57 RecName: Full=Ribonuclease G; Short=RNase G; AltName:
           Full=Cytoplasmic axial filament protein
 gi|71162357|sp|P0A9J1|RNG_ECOL6 RecName: Full=Ribonuclease G; Short=RNase G; AltName:
           Full=Cytoplasmic axial filament protein
 gi|71162358|sp|P0A9J0|RNG_ECOLI RecName: Full=Ribonuclease G; Short=RNase G; AltName:
           Full=Cytoplasmic axial filament protein
 gi|71162359|sp|P0A9J3|RNG_SHIFL RecName: Full=Ribonuclease G; Short=RNase G; AltName:
           Full=Cytoplasmic axial filament protein
 gi|48826|emb|CAA40457.1| unnamed protein product [Escherichia coli K-12]
 gi|13363592|dbj|BAB37542.1| ribonuclease G [Escherichia coli O157:H7 str. Sakai]
 gi|30042837|gb|AAP18560.1| ribonuclease G [Shigella flexneri 2a str. 2457T]
 gi|56383848|gb|AAN44749.2| ribonuclease G [Shigella flexneri 2a str. 301]
 gi|85676039|dbj|BAE77289.1| ribonuclease G [Escherichia coli str. K12 substr. W3110]
 gi|87082235|gb|AAC76279.2| ribonuclease G [Escherichia coli str. K-12 substr. MG1655]
 gi|110345073|gb|ABG71310.1| ribonuclease G [Escherichia coli 536]
 gi|115514654|gb|ABJ02729.1| ribonuclease G [Escherichia coli APEC O1]
 gi|157068404|gb|ABV07659.1| ribonuclease G [Escherichia coli HS]
 gi|157081331|gb|ABV21039.1| ribonuclease G [Escherichia coli E24377A]
 gi|169753438|gb|ACA76137.1| ribonuclease, Rne/Rng family [Escherichia coli ATCC 8739]
 gi|169890612|gb|ACB04319.1| ribonuclease G [Escherichia coli str. K-12 substr. DH10B]
 gi|170517683|gb|ACB15861.1| ribonuclease G [Escherichia coli SMS-3-5]
 gi|187427660|gb|ACD06934.1| ribonuclease G [Shigella boydii CDC 3083-94]
 gi|187767161|gb|EDU31005.1| ribonuclease G [Escherichia coli O157:H7 str. EC4196]
 gi|188013944|gb|EDU52066.1| ribonuclease G [Escherichia coli O157:H7 str. EC4113]
 gi|188487180|gb|EDU62283.1| ribonuclease G [Escherichia coli 53638]
 gi|189001072|gb|EDU70058.1| ribonuclease G [Escherichia coli O157:H7 str. EC4076]
 gi|189358640|gb|EDU77059.1| ribonuclease G [Escherichia coli O157:H7 str. EC4401]
 gi|189361817|gb|EDU80236.1| ribonuclease G [Escherichia coli O157:H7 str. EC4486]
 gi|189366116|gb|EDU84532.1| ribonuclease G [Escherichia coli O157:H7 str. EC4501]
 gi|189374163|gb|EDU92579.1| ribonuclease G [Escherichia coli O157:H7 str. EC869]
 gi|189376860|gb|EDU95276.1| ribonuclease G [Escherichia coli O157:H7 str. EC508]
 gi|190901772|gb|EDV61525.1| ribonuclease G [Escherichia coli B7A]
 gi|190905863|gb|EDV65481.1| ribonuclease G [Escherichia coli F11]
 gi|192926974|gb|EDV81597.1| ribonuclease G [Escherichia coli E22]
 gi|192956390|gb|EDV86850.1| ribonuclease G [Escherichia coli E110019]
 gi|194412816|gb|EDX29108.1| ribonuclease G [Escherichia coli B171]
 gi|194416860|gb|EDX32983.1| ribonuclease G [Shigella dysenteriae 1012]
 gi|194421909|gb|EDX37915.1| ribonuclease G [Escherichia coli 101-1]
 gi|208725419|gb|EDZ75020.1| ribonuclease G [Escherichia coli O157:H7 str. EC4206]
 gi|208733691|gb|EDZ82378.1| ribonuclease G [Escherichia coli O157:H7 str. EC4045]
 gi|208738625|gb|EDZ86307.1| ribonuclease G [Escherichia coli O157:H7 str. EC4042]
 gi|209158014|gb|ACI35447.1| ribonuclease G [Escherichia coli O157:H7 str. EC4115]
 gi|209757668|gb|ACI77146.1| ribonuclease G [Escherichia coli]
 gi|209757670|gb|ACI77147.1| ribonuclease G [Escherichia coli]
 gi|209757672|gb|ACI77148.1| ribonuclease G [Escherichia coli]
 gi|209757674|gb|ACI77149.1| ribonuclease G [Escherichia coli]
 gi|209757676|gb|ACI77150.1| ribonuclease G [Escherichia coli]
 gi|209913976|dbj|BAG79050.1| ribonuclease G [Escherichia coli SE11]
 gi|215266627|emb|CAS11066.1| ribonuclease G [Escherichia coli O127:H6 str. E2348/69]
 gi|217319068|gb|EEC27493.1| ribonuclease G [Escherichia coli O157:H7 str. TW14588]
 gi|218353677|emb|CAU99920.1| ribonuclease G [Escherichia coli 55989]
 gi|218362578|emb|CAR00202.1| ribonuclease G [Escherichia coli IAI1]
 gi|218367077|emb|CAR04848.1| ribonuclease G [Escherichia coli S88]
 gi|218371999|emb|CAR19855.1| ribonuclease G [Escherichia coli IAI39]
 gi|218429092|emb|CAR09899.1| ribonuclease G [Escherichia coli ED1a]
 gi|218433957|emb|CAR14874.1| ribonuclease G [Escherichia coli UMN026]
 gi|222034956|emb|CAP77699.1| ribonuclease G [Escherichia coli LF82]
 gi|227835357|gb|EEJ45823.1| bifunctional ribonuclease G/cytoplasmic axial filament protein
           [Escherichia coli 83972]
 gi|238863468|gb|ACR65466.1| ribonuclease G [Escherichia coli BW2952]
 gi|253322968|gb|ACT27570.1| ribonuclease, Rne/Rng family [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975084|gb|ACT40755.1| ribonuclease G [Escherichia coli B str. REL606]
 gi|253979240|gb|ACT44910.1| ribonuclease G [Escherichia coli BL21(DE3)]
 gi|254594589|gb|ACT73950.1| RNase G [Escherichia coli O157:H7 str. TW14359]
 gi|257756015|dbj|BAI27517.1| ribonuclease G [Escherichia coli O26:H11 str. 11368]
 gi|257761200|dbj|BAI32697.1| ribonuclease G [Escherichia coli O103:H2 str. 12009]
 gi|257766346|dbj|BAI37841.1| ribonuclease G [Escherichia coli O111:H- str. 11128]
 gi|260447726|gb|ACX38148.1| ribonuclease, Rne/Rng family [Escherichia coli DH1]
 gi|281180280|dbj|BAI56610.1| ribonuclease G [Escherichia coli SE15]
 gi|281602624|gb|ADA75608.1| Ribonuclease G [Shigella flexneri 2002017]
 gi|290764487|gb|ADD58448.1| Ribonuclease G [Escherichia coli O55:H7 str. CB9615]
 gi|291322661|gb|EFE62090.1| ribonuclease G [Escherichia coli B088]
 gi|291426855|gb|EFE99887.1| ribonuclease G [Escherichia coli FVEC1412]
 gi|291432026|gb|EFF05009.1| ribonuclease G [Escherichia coli B185]
 gi|291469385|gb|EFF11876.1| ribonuclease [Escherichia coli B354]
 gi|294493247|gb|ADE92003.1| ribonuclease G [Escherichia coli IHE3034]
 gi|298277730|gb|EFI19246.1| ribonuclease G [Escherichia coli FVEC1302]
 gi|299878648|gb|EFI86859.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
 gi|300300253|gb|EFJ56638.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
 gi|300307959|gb|EFJ62479.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
 gi|300315063|gb|EFJ64847.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
 gi|300358264|gb|EFJ74134.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
 gi|300397650|gb|EFJ81188.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
 gi|300403601|gb|EFJ87139.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
 gi|300415345|gb|EFJ98655.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
 gi|300452139|gb|EFK15759.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
 gi|300457579|gb|EFK21072.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
 gi|300463309|gb|EFK26802.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
 gi|300523127|gb|EFK44196.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
 gi|300529800|gb|EFK50862.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
 gi|300840416|gb|EFK68176.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
 gi|300846983|gb|EFK74743.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
 gi|301076207|gb|EFK91013.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
 gi|305849984|gb|EFM50443.1| ribonuclease G [Escherichia coli NC101]
 gi|306905578|gb|EFN36110.1| ribonuclease, Rne/Rng family [Escherichia coli W]
 gi|307555332|gb|ADN48107.1| ribonuclease G [Escherichia coli ABU 83972]
 gi|307625161|gb|ADN69465.1| ribonuclease G [Escherichia coli UM146]
 gi|308122780|gb|EFO60042.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
 gi|308926692|gb|EFP72168.1| ribonuclease G [Shigella dysenteriae 1617]
 gi|309703667|emb|CBJ03008.1| ribonuclease g [Escherichia coli ETEC H10407]
 gi|310334861|gb|EFQ01066.1| ribonuclease G [Escherichia coli 1827-70]
 gi|312286641|gb|EFR14552.1| ribonuclease G [Escherichia coli 2362-75]
 gi|312947796|gb|ADR28623.1| ribonuclease G [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648511|gb|EFS12953.1| ribonuclease G [Shigella flexneri 2a str. 2457T]
 gi|313848765|emb|CAQ33574.2| ribonuclease G (RNAse G) monomer, subunit of ribonuclease G (RNAse
           G) [Escherichia coli BL21(DE3)]
 gi|315062546|gb|ADT76873.1| ribonuclease G [Escherichia coli W]
 gi|315137831|dbj|BAJ44990.1| ribonuclease G [Escherichia coli DH1]
 gi|315257171|gb|EFU37139.1| S1 RNA binding domain protein [Escherichia coli MS 85-1]
 gi|315289058|gb|EFU48456.1| S1 RNA binding domain protein [Escherichia coli MS 110-3]
 gi|315294786|gb|EFU54129.1| S1 RNA binding domain protein [Escherichia coli MS 153-1]
 gi|315300897|gb|EFU60117.1| S1 RNA binding domain protein [Escherichia coli MS 16-3]
 gi|320175957|gb|EFW51033.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Shigella dysenteriae CDC 74-1112]
 gi|320181516|gb|EFW56434.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Shigella boydii ATCC 9905]
 gi|320184033|gb|EFW58855.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Shigella flexneri CDC 796-83]
 gi|320189593|gb|EFW64252.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Escherichia coli O157:H7 str. EC1212]
 gi|320194723|gb|EFW69353.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Escherichia coli WV_060327]
 gi|320202156|gb|EFW76731.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Escherichia coli EC4100B]
 gi|320640038|gb|EFX09619.1| ribonuclease G [Escherichia coli O157:H7 str. G5101]
 gi|320645608|gb|EFX14617.1| ribonuclease G [Escherichia coli O157:H- str. 493-89]
 gi|320650918|gb|EFX19375.1| ribonuclease G [Escherichia coli O157:H- str. H 2687]
 gi|320656299|gb|EFX24211.1| ribonuclease G [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661989|gb|EFX29397.1| ribonuclease G [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666823|gb|EFX33802.1| ribonuclease G [Escherichia coli O157:H7 str. LSU-61]
 gi|323154456|gb|EFZ40657.1| ribonuclease G [Escherichia coli EPECa14]
 gi|323162933|gb|EFZ48768.1| ribonuclease G [Escherichia coli E128010]
 gi|323165209|gb|EFZ50999.1| ribonuclease G [Shigella sonnei 53G]
 gi|323173496|gb|EFZ59125.1| ribonuclease G [Escherichia coli LT-68]
 gi|323183007|gb|EFZ68406.1| ribonuclease G [Escherichia coli 1357]
 gi|323189141|gb|EFZ74425.1| ribonuclease G [Escherichia coli RN587/1]
 gi|323376866|gb|ADX49134.1| ribonuclease, Rne/Rng family [Escherichia coli KO11]
 gi|323936269|gb|EGB32561.1| rne/Rng family protein ribonuclease [Escherichia coli E1520]
 gi|323941660|gb|EGB37839.1| rne/Rng family protein ribonuclease [Escherichia coli E482]
 gi|323946906|gb|EGB42922.1| rne/Rng family protein ribonuclease [Escherichia coli H120]
 gi|323951242|gb|EGB47117.1| rne/Rng family protein ribonuclease [Escherichia coli H252]
 gi|323957613|gb|EGB53327.1| rne/Rng family protein ribonuclease [Escherichia coli H263]
 gi|323961105|gb|EGB56719.1| rne/Rng family protein ribonuclease [Escherichia coli H489]
 gi|323966425|gb|EGB61859.1| rne/Rng family protein ribonuclease [Escherichia coli M863]
 gi|323970338|gb|EGB65608.1| rne/Rng family protein ribonuclease [Escherichia coli TA007]
 gi|323979043|gb|EGB74121.1| rne/Rng family protein ribonuclease [Escherichia coli TW10509]
 gi|324009063|gb|EGB78282.1| S1 RNA binding domain protein [Escherichia coli MS 57-2]
 gi|324015841|gb|EGB85060.1| S1 RNA binding domain protein [Escherichia coli MS 60-1]
 gi|324020756|gb|EGB89975.1| S1 RNA binding domain protein [Escherichia coli MS 117-3]
 gi|324119427|gb|EGC13310.1| rne/Rng family protein ribonuclease [Escherichia coli E1167]
 gi|326337941|gb|EGD61775.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Escherichia coli O157:H7 str. 1125]
 gi|326347510|gb|EGD71235.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Escherichia coli O157:H7 str. 1044]
 gi|327251339|gb|EGE63028.1| ribonuclease G [Escherichia coli STEC_7v]
 gi|330909290|gb|EGH37804.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Escherichia coli AA86]
 gi|331054108|gb|EGI26137.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA206]
 gi|331058102|gb|EGI30084.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA143]
 gi|331062982|gb|EGI34896.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA271]
 gi|331078502|gb|EGI49708.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli H299]
 gi|332090924|gb|EGI96015.1| ribonuclease G [Shigella boydii 3594-74]
 gi|332345202|gb|AEE58536.1| ribonuclease G [Escherichia coli UMNK88]
 gi|332752409|gb|EGJ82799.1| ribonuclease G [Shigella flexneri 4343-70]
 gi|332752450|gb|EGJ82839.1| ribonuclease G [Shigella flexneri K-671]
 gi|332754468|gb|EGJ84834.1| ribonuclease G [Shigella flexneri 2747-71]
 gi|332765246|gb|EGJ95473.1| ribonuclease G [Shigella flexneri 2930-71]
 gi|332998367|gb|EGK17966.1| ribonuclease G [Shigella flexneri VA-6]
 gi|333000404|gb|EGK19987.1| ribonuclease G [Shigella flexneri K-218]
 gi|333014522|gb|EGK33869.1| ribonuclease G [Shigella flexneri K-304]
          Length = 489

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|237706007|ref|ZP_04536488.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226899047|gb|EEH85306.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 495

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 82  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 141

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 142 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 199

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 200 TKVMERKQRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 259

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 260 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 319

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 320 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 379

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 380 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 439

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 440 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 492


>gi|110807108|ref|YP_690628.1| ribonuclease G [Shigella flexneri 5 str. 8401]
 gi|110616656|gb|ABF05323.1| bundles of cytoplasmic filaments [Shigella flexneri 5 str. 8401]
          Length = 489

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y + + +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 434 AYDSDSFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|58427532|gb|AAW76569.1| ribonuclease G [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 500

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 107 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 165

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 166 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 225

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 226 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 285

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 286 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 345

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 346 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 405

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 406 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 465

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 466 EESAAVAELEEFLGKSILFQSDDQYLQEQFDV 497



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 2  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 60

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 61 VGLERAAFLHANDV 74


>gi|332087238|gb|EGI92371.1| ribonuclease G [Shigella boydii 5216-82]
          Length = 489

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|284923262|emb|CBG36356.1| ribonuclease G (cytoplasmic axial filament protein) [Escherichia
           coli 042]
          Length = 485

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 72  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 131

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 132 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 189

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 190 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 249

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 250 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 309

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 310 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 369

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 370 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 429

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 430 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 482


>gi|170765797|ref|ZP_02900608.1| ribonuclease G [Escherichia albertii TW07627]
 gi|170124943|gb|EDS93874.1| ribonuclease G [Escherichia albertii TW07627]
          Length = 489

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVTEYCDEQG-GFIIRTAAEGVGETELASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|84624787|ref|YP_452159.1| ribonuclease G [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|122879251|ref|YP_201954.6| ribonuclease G [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188577773|ref|YP_001914702.1| ribonuclease G [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368727|dbj|BAE69885.1| ribonuclease G [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522225|gb|ACD60170.1| ribonuclease G [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 499

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSILFQSDDQYLQEQFDV 496



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|51246860|ref|YP_066744.1| RNAse E [Desulfotalea psychrophila LSv54]
 gi|50877897|emb|CAG37737.1| probable RNAse E [Desulfotalea psychrophila LSv54]
          Length = 883

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 174/496 (35%), Positives = 267/496 (53%), Gaps = 3/496 (0%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS- 140
           P   R ALL++  +       V    T  ++      ++E     A     T +   +  
Sbjct: 388 PEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGTVKNGFLPF 447

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
           +         D+   + ++V ++  R+  I++V+   Q LLVQ+VKEE G KGA +TTYL
Sbjct: 448 SEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKKGANMTTYL 507

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SL GR  VLMP  S    ISRKI     R  L++  R L +P G G I+RTA     +  
Sbjct: 508 SLPGRCVVLMPG-SDSAGISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTASVDINEEA 566

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           + RD  YL++LW++VRE         L+YE+   + R +R+ Y   I EI+V       +
Sbjct: 567 LARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILVDAPLALEQ 626

Query: 321 AKDFMKLLMPSYARIV-RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
             +F+ +L  +   +  R ++   PIF +  +E Q++S++Q +V+LPS G ++I+ TEAL
Sbjct: 627 VNEFVSMLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSIVIDPTEAL 686

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           V+IDVNSG +++    +++  Q N+EAA E ARQLRLRDL GL+VVDFIDM  KK+  +V
Sbjct: 687 VAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMRNKKHINAV 746

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EK++K ++K+D+A+V    IS FGL+++SRQ++ S +     +VC +CKG G +R+  ++
Sbjct: 747 EKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRGIVRAVETL 806

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           AL  LR ++    +     I  H   DV  YLLN KR  I E E    V I +V+     
Sbjct: 807 ALFYLRRIQTGASRKPVVKIECHFPLDVASYLLNNKRQEITEMENNNEVEIMIVVESRFK 866

Query: 560 DKLFYIEKGSPVQALV 575
                I      +   
Sbjct: 867 PAENEIVFHRAEKEKE 882



 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 31/144 (21%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +            K  S+    + +   + V       P+   E          + ES  
Sbjct: 187 RKKRATRPARPVAKASSEEAKVASEPAKKAVEAKSGEKPVQDVEKAPVSSAESPAPESEV 246

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +KR  RRR R            S             +  +     +     E  + G 
Sbjct: 247 APKKRPARRRSRSNKKTSARPETDSVAEKAPMDPAPVSEKAVAAEASSGEEKDEKASKGP 306

Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710
                           E    + D
Sbjct: 307 NRRRSRRPRKRRPATDEQEAVAKD 330


>gi|157372640|ref|YP_001480629.1| ribonuclease G [Serratia proteamaculans 568]
 gi|157324404|gb|ABV43501.1| ribonuclease, Rne/Rng family [Serratia proteamaculans 568]
          Length = 489

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 200/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+   G     G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 AAHVGVSQRIESEAERDR-LKKAVAGYCDELG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L +R +RD     +  I V     +    +F    +P  
Sbjct: 194 TKVMERKKRNQTKYKLYGELALAQRILRDFAGAALDRIRVDSRLTHDLLVEFTGEYIPDI 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TAKLELYTGSQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDEHRRRVLHSLELALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHVLCHDCPTCHGRGTLKTVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+  + V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|94309723|ref|YP_582933.1| RNAse G [Cupriavidus metallidurans CH34]
 gi|93353575|gb|ABF07664.1| ribonuclease G [Cupriavidus metallidurans CH34]
          Length = 510

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 117/401 (29%), Positives = 195/401 (48%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P         R   
Sbjct: 107 NGHLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDPHIGISQRIEG 166

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
                     +   +      G I+RT     +  E+  D  YL ++W  +R  A    A
Sbjct: 167 EIDREALRARVQGLVPTDERGGFIVRTIAEEASDEELGNDIAYLRKIWATIRSNATTLPA 226

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+Y++ NL +R +RD        I +   + Y++  +F +   P+    +  Y    P
Sbjct: 227 PSLLYQDLNLAQRVLRDFINDATGVIQIDSRENYQKLVEFAQEYTPAVLPRLSHYTGERP 286

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF    I+ +++      V L S GY++I+QTEA+ +IDVN+G        +DT  +TNL
Sbjct: 287 IFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNL 346

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA  IARQLRLR+L G+I++DFIDME  ++  +V  +LK +L +DR R+ V   S  GL
Sbjct: 347 EAAHTIARQLRLRNLGGIIIIDFIDMENVEHRDAVLSELKRALSRDRTRITVNGFSQLGL 406

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R R S+     + C  C G G +++  +V   I R +     Q+      +   
Sbjct: 407 VEMTRKRTRESLAHVLCEQCPVCTGKGQVKTPRTVCYDIFREIMRESRQFNPREFRILAS 466

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +V+   L ++   +       G  I++ +      + + I
Sbjct: 467 QEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 507



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 26  MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 84

Query: 61  YGGNRHGFLPFLEI-HP 76
            G  R  FL   +I HP
Sbjct: 85  VGLERAAFLHVADIWHP 101


>gi|83647992|ref|YP_436427.1| ribonucleases G and E [Hahella chejuensis KCTC 2396]
 gi|83636035|gb|ABC32002.1| Ribonucleases G and E [Hahella chejuensis KCTC 2396]
          Length = 494

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 130/416 (31%), Positives = 215/416 (51%), Gaps = 7/416 (1%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
           +P +      +   I  +++  Q L+VQ+ K+  G KGA +TT LS+  RY V MP+ + 
Sbjct: 77  NPGEDRNGGNKHPDISSLLREGQSLVVQVTKDPIGAKGARLTTQLSIPSRYLVYMPDNNH 136

Query: 216 GETISRKITNPVDRKNLKEIAR------GLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
                R   +    + LKE+ +            G G I+RTA       E+K D  +L 
Sbjct: 137 IGISQRIEDDAERDR-LKELIQLCVTTEDANSADGAGFIIRTAAEGVGSEELKSDILFLQ 195

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           +LW ++RE   +S AP  +YE+  L  R +RDL      +I +   + + +A  F+   +
Sbjct: 196 KLWLSLREKIKSSPAPGPIYEDLPLYIRTLRDLVRPYTEKIRIDSRESFHKALKFVDEFV 255

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
                 +  Y    PIF    +E +L      +V L S GY+II+QTEA+ +IDVN+G  
Sbjct: 256 SEIRNKLEYYPGERPIFDLYSVEDELQKALSRKVQLKSGGYLIIDQTEAMTTIDVNTGAF 315

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                +E+T  +TNLEAA  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++
Sbjct: 316 VGHRNLEETIFKTNLEAARAIARQLRLRNLGGIIIIDFIDMEDEEHKRQVLRMLEKMLER 375

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           D A+ ++  +S  GL+EM+R+R   S+ +   + C  C G G +++  +V   I R +  
Sbjct: 376 DHAKTKISCVSELGLVEMTRKRTTESLGQMLCEPCPACDGRGTVKTAQTVCYEIFREILR 435

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               Y A   +V     VV  LL+++  ++ + E   G  I   + +    + F +
Sbjct: 436 INRTYDAQGYLVLAAQAVVDLLLDEQSDSVADLETFIGKRIRFQVEVMYTQEQFDV 491



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV V+ +  ++E+  E   ++ I GNIY  KV RV P ++AAF+D
Sbjct: 1  MSEEILINVT-PVETRVAVVENGMLQEVYIERSQRRGIVGNIYKGKVIRVLPGMEAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   ++
Sbjct: 60 IGLERAAFIHASDV 73


>gi|77361593|ref|YP_341168.1| ribonuclease G [Pseudoalteromonas haloplanktis TAC125]
 gi|76876504|emb|CAI87726.1| RNase G (ribonuclease G) [Pseudoalteromonas haloplanktis TAC125]
          Length = 490

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 241/484 (49%), Gaps = 7/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E + +    G++ +     +      A F     E++    
Sbjct: 11  PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +D+V++   V+G          K+   I+E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 70  ASDIVNSASIVEGVDD----TPIKKVQDIRELVRQGQYIMVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           +  RY V MP+ +      R  T     + LK+I        G   I+RTA    ++ E+
Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERGR-LKKIVAEYSDENG-SFIVRTAAEGASEAEL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  +L +LW  V      +    +++E+  L  R +RD   +D+  I V  +  Y+E 
Sbjct: 184 RHDAAFLQKLWQKVVSRRKKTSKASILHEDLTLAFRTLRDYVGEDMERIRVDSKLTYQEL 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F +  +P  ++++  Y    PIF    +E ++      +VTL S GY+II+QTEA+ +
Sbjct: 244 KLFTEEFVPILSQVLEYYPGERPIFDLFDVENEIQKALHRKVTLKSGGYLIIDQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVN+G       +E+T   TN+EA   IARQLRLR+L G+I++DFIDM  + + R V  
Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSEDHKRRVMH 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +L KDRA+  +  +S  GL+EM+R+R R S+      VC  C G G  ++  +V  
Sbjct: 364 SLESALAKDRAKANINGLSALGLVEMTRKRTRESLEHILCDVCPACSGRGSQKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +LR +      Y A   +V+    V   LLN +   + E E   G  +N+ +    + +
Sbjct: 424 ELLREIVRVNRAYDADKFVVYAAPAVCEALLNDEYHNLAELELFIGKQVNIQVESLYSQE 483

Query: 562 LFYI 565
            F +
Sbjct: 484 QFDV 487


>gi|325294283|ref|YP_004280797.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325064731|gb|ADY72738.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 508

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 160/486 (32%), Positives = 273/486 (56%), Gaps = 2/486 (0%)

Query: 83  FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
              R A+L+E  + +   E   +    G++       +      A       +++ +   
Sbjct: 25  KEVRIAVLEEGELVEFYVERKGNRGIVGNIYKGRVVKIVPAVQAAFVDIGISKKAFLYVK 84

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
           + V    E+ +    E    +      I+EV+   Q +LVQ+ KE  G KG  +TT +++
Sbjct: 85  DAVTVEFEEEEDLFEETTQPQEIELPPIEEVLSEGQEVLVQVSKEPIGTKGPRITTNITV 144

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
            G Y VL+P  +K   ISR+IT+  +R+ LK+IA  ++     G+I+RTA    TK ++K
Sbjct: 145 PGHYLVLLPTVNKIG-ISRRITDEAERERLKKIAEDIKPE-DYGIIVRTAAEGATKEDLK 202

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
           +D EY++R+W  + E A N   P L+Y++  ++ + +RDL  +++SE+I+  +  +  A 
Sbjct: 203 KDLEYILRVWKGLLEKAENRPPPSLLYQDLEIVPKTLRDLLTEEVSEVIIDSKAEFERAL 262

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            F K  +P  A  ++ Y    P+F R  +E  ++     +V LP+ GY++I++TEALVSI
Sbjct: 263 SFAKAFIPKLAGRIKYYSKDIPLFQRFEVEKAIEKTLSRKVYLPNGGYIVIDETEALVSI 322

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSG+  +   +E+TAL+ NL AA+EIARQLRLRD+ G+IV+DFIDM+E++N + + K 
Sbjct: 323 DVNSGKFKKTKTLEETALRINLVAAKEIARQLRLRDIGGIIVIDFIDMKEEENKQLLLKT 382

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           L+E L KDRA+ ++ ++S+ GL+EM+R+R++ S+ +S T  C YC+G G ++S  +VA  
Sbjct: 383 LEEELSKDRAKTKIVSMSDLGLVEMTRKRVKKSLGKSLTMTCPYCEGKGRVKSIETVAFE 442

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
           I R +   L    +  I V+ +  V   L   ++  I + E  +   I V+       + 
Sbjct: 443 IEREILSLLKTNNSKVIKVYANPLVAEKLKGDEKDIIDKIEEVYEKKIKVIPVEYYHIEK 502

Query: 563 FYIEKG 568
           F + +G
Sbjct: 503 FTVVRG 508



 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+A H +E R+ VL +  + E   E +  + I GNIY  +V ++ P++QAAFVD G
Sbjct: 16 KQILINA-HTKEVRIAVLEEGELVEFYVERKGNRGIVGNIYKGRVVKIVPAVQAAFVDIG 74

Query: 63 GNRHGFLPFLE 73
           ++  FL   +
Sbjct: 75 ISKKAFLYVKD 85


>gi|289663229|ref|ZP_06484810.1| ribonuclease G [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 499

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLEAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|315617057|gb|EFU97667.1| ribonuclease G [Escherichia coli 3431]
 gi|332086476|gb|EGI91623.1| ribonuclease G [Shigella dysenteriae 155-74]
          Length = 474

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 61  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 120

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 121 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 178

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 179 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 238

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 239 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 298

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 299 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 358

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 359 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 418

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 419 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 471


>gi|332288468|ref|YP_004419320.1| ribonuclease G [Gallibacterium anatis UMN179]
 gi|330431364|gb|AEC16423.1| ribonuclease G [Gallibacterium anatis UMN179]
          Length = 494

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 211/414 (50%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K      I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 80  HTECVDENEQKQFVVKDIAELVREGQDIIVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 139

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA  + +  E+K+D ++L RLW
Sbjct: 140 NSHVGVSQRIESEEERAR--LKELVTPFCDELGGFIIRTAAENVSLEELKQDEDFLKRLW 197

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E  + S AP ++Y E  L +R IRD     I  I +  +  + E K+F++  +P  
Sbjct: 198 RKVLERKVRSTAPAMLYTEPALAQRIIRDFVGMTIDSIRIDSKLVFLEVKEFIEEFLPHL 257

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y  P P+F    +E  +       V L S GY+II QTEA+ +ID+N+G     
Sbjct: 258 THTLSVYTGPQPLFDLYNVEDSIQKALNKRVNLKSGGYLIIEQTEAMTTIDINTGGFVGH 317

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L+++L KDR 
Sbjct: 318 RNLEETIFNTNIEATQAIAQQLQLRNLGGIIIIDFIDMQIIEHQERVLQSLRDALAKDRV 377

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+     + C  C G G+++S  ++   I R +     
Sbjct: 378 KTTVNGFTQLGLVEMTRKRTRESLEHVLCEECPNCHGRGHVKSVETICYEIAREIIRVHH 437

Query: 513 QYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y++   +V+    V  +L+N++  A + E E   G  + + +      + F +
Sbjct: 438 LYSSEQFLVYASRAVAEHLINEETHALLAEVEVFIGKKVQIKMEPYYTQEQFDV 491


>gi|271498846|ref|YP_003331871.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586]
 gi|270342401|gb|ACZ75166.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586]
          Length = 489

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVADYCDEQG-GFIIRTAAEGVGEEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L  R +RD     +  I V  +  Y    +F    +P  
Sbjct: 194 TKVMERKKRNQTKCKLYGELALAHRILRDFAGASLDRIRVDSKLTYDSLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMANEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R V     
Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCHGRGSVKTVETVCYEIMREVVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|21232040|ref|NP_637957.1| ribonuclease G [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767833|ref|YP_242595.1| ribonuclease G [Xanthomonas campestris pv. campestris str. 8004]
 gi|188990949|ref|YP_001902959.1| ribonuclease G [Xanthomonas campestris pv. campestris str. B100]
 gi|21113780|gb|AAM41881.1| ribonuclease G [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573165|gb|AAY48575.1| ribonuclease G [Xanthomonas campestris pv. campestris str. 8004]
 gi|167732709|emb|CAP50903.1| ribonuclease G [Xanthomonas campestris pv. campestris]
          Length = 499

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 132/392 (33%), Positives = 219/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      + A  ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREASACSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  KD+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRKDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALDKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|261344918|ref|ZP_05972562.1| ribonuclease G [Providencia rustigianii DSM 4541]
 gi|282567058|gb|EFB72593.1| ribonuclease G [Providencia rustigianii DSM 4541]
          Length = 489

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 132/413 (31%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E++K  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK          G G I+RTA     + ++K+D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKACVAQYCDENG-GFIIRTAAEGVAEDDVKQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +V    +Y E +L  R IRD     +  I V     Y E K+F+   +P  
Sbjct: 194 AKVIERKKRNVTRTKIYGELSLAYRIIRDFAGASLDRIRVDSRLTYSELKEFIAEYVPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y+   PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V   L+++L KD+ 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMIDVEHRRRVLASLEQALSKDKV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +V+    VV  L   +   + E E   G  + V I    + + F +
Sbjct: 434 TIDADRFLVYASQAVVDVLTGDESHALAEVEIFVGKQVKVQIEPLYSQERFDV 486


>gi|242277641|ref|YP_002989770.1| ribonuclease, Rne/Rng family [Desulfovibrio salexigens DSM 2638]
 gi|242120535|gb|ACS78231.1| ribonuclease, Rne/Rng family [Desulfovibrio salexigens DSM 2638]
          Length = 490

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 160/404 (39%), Positives = 245/404 (60%), Gaps = 3/404 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +        KK  R   +Q+V+K  Q + VQ+VKE  G KGA +++YLS+ GRY VL P 
Sbjct: 84  EYYQGAYKLKKGHRYPLLQKVLKPGQEIFVQVVKEPTGKKGAFLSSYLSIPGRYFVLTPG 143

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   ISRKI +  +R+ LKE+   +   AG+GVI+RTA   ++K  ++RDF++L RLW
Sbjct: 144 REQIG-ISRKIEDEKERERLKELIDEVNPGAGVGVIVRTASKGQSKSALRRDFKFLTRLW 202

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           +++RE   ++  P LVYEE  L  RA+RD    D+ EI V  ++   + K    L  P  
Sbjct: 203 NDIREKGQDAKPPSLVYEEMGLAARAVRDYLSSDVVEIWVDDQETLEQVKKLATLSFPRR 262

Query: 333 ARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
           + +V+ + +    ++ R  +  Q++ ++  EV LPS G ++ +QTEAL +ID+NSG+   
Sbjct: 263 SNLVKLHSDTDKSLWERFNLVKQIEQIYGREVNLPSGGRLVFDQTEALTAIDINSGKIGG 322

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           E   ++ AL+TN E+AE IARQL+LRDL G +V+DFI+M++ K+ R VEK ++ +LK DR
Sbjct: 323 ERNFKEMALKTNKESAEMIARQLKLRDLGGQVVIDFIEMKDPKHCREVEKTMRAALKGDR 382

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR  VG IS FGL+E+ RQR+ SS +  +T+ C  C G G  R+    A+  ++ +   L
Sbjct: 383 ARTDVGRISRFGLMELVRQRLGSSAIAVSTEACPCCDGTGIRRNMEWQAMQAIKDIYRML 442

Query: 512 LQYTAHNIIVHTH-SDVVLYLLNQKRATIVEYEARFGVSINVVI 554
            +    + +V+    ++ LYLLN KR  I +YE  FG  IN+ I
Sbjct: 443 RRPNCESPLVYDAEEELALYLLNHKRDAISQYEKMFGTKINIEI 486



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          M I     E+  V + ++ +V E   E  H+ + KGNIY   +  ++ +LQAAF++YG  
Sbjct: 12 MFISVLPGEQVEVALTQEGQVIEYYVEMLHQAKTKGNIYKGYIHNIDAALQAAFINYGAE 71

Query: 65 RHGFLPFLEIHPDYYQ 80
          R+GFL   E+HP+YYQ
Sbjct: 72 RNGFLQVDEVHPEYYQ 87


>gi|254038406|ref|ZP_04872464.1| ribonuclease G [Escherichia sp. 1_1_43]
 gi|331643945|ref|ZP_08345076.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli H736]
 gi|331649038|ref|ZP_08350126.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli M605]
 gi|331654844|ref|ZP_08355844.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli M718]
 gi|331674763|ref|ZP_08375522.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA280]
 gi|331679320|ref|ZP_08379992.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli H591]
 gi|332279925|ref|ZP_08392338.1| ribonuclease G [Shigella sp. D9]
 gi|25496493|pir||B85989 bundles of cytoplasmic filaments [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12517870|gb|AAG58374.1|AE005552_4 bundles of cytoplasmic filaments [Escherichia coli O157:H7 str.
           EDL933]
 gi|26110255|gb|AAN82441.1|AE016767_201 Ribonuclease G [Escherichia coli CFT073]
 gi|606187|gb|AAA58050.1| ORF_f495; orfF of ECMRED, uses 2nd start [Escherichia coli str.
           K-12 substr. MG1655]
 gi|73857253|gb|AAZ89960.1| bundles of cytoplasmic filaments [Shigella sonnei Ss046]
 gi|81242702|gb|ABB63412.1| bundles of cytoplasmic filaments [Shigella dysenteriae Sd197]
 gi|81246935|gb|ABB67643.1| bundles of cytoplasmic filaments [Shigella boydii Sb227]
 gi|91074240|gb|ABE09121.1| ribonuclease G [Escherichia coli UTI89]
 gi|226840030|gb|EEH72051.1| ribonuclease G [Escherichia sp. 1_1_43]
 gi|331037416|gb|EGI09640.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli H736]
 gi|331042785|gb|EGI14927.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli M605]
 gi|331048226|gb|EGI20303.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli M718]
 gi|331068202|gb|EGI39598.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli TA280]
 gi|331073385|gb|EGI44708.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein)
           [Escherichia coli H591]
 gi|332102277|gb|EGJ05623.1| ribonuclease G [Shigella sp. D9]
          Length = 495

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 82  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 141

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 142 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 199

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 200 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 259

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 260 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 319

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 320 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 379

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 380 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 439

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 440 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 492


>gi|21109057|gb|AAM37615.1| ribonuclease G [Xanthomonas axonopodis pv. citri str. 306]
          Length = 500

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 107 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 165

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 166 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 225

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 226 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 285

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 286 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 345

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 346 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 405

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 406 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 465

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 466 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 497



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 2  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 60

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 61 VGLERAAFLHANDV 74


>gi|258516458|ref|YP_003192680.1| ribonuclease, Rne/Rng family [Desulfotomaculum acetoxidans DSM 771]
 gi|257780163|gb|ACV64057.1| ribonuclease, Rne/Rng family [Desulfotomaculum acetoxidans DSM 771]
          Length = 564

 Score =  254 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/397 (30%), Positives = 215/397 (54%), Gaps = 3/397 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I +V+K  Q L+VQIVKE  G KG  +TT+++L GRY VLMP         R       
Sbjct: 91  NIGDVLKQGQDLVVQIVKEPIGTKGPRITTHITLPGRYLVLMPTVDYIGISRRIADEQER 150

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
            +   +       P  MG+I+RT     ++ E+ +D   L +LW  +   + +   P+L+
Sbjct: 151 ER--LKELAARVKPRDMGLIVRTVAEGVSEEELAQDVNVLAKLWRKIINRSNHGPVPNLL 208

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           + +  L+ R +RD++ +D+  +I+     Y    + +  ++    +I    ++   +F  
Sbjct: 209 HRDLELVHRILRDIFTEDVDRLIIDSRYEYERVLELL-DIIDPQLKIKVSVDERENLFEE 267

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            GIE++L+   + +V L   GY++I+Q EAL +IDVN+G+      +EDT L+TNL+AA 
Sbjct: 268 YGIEMELEKAVKRKVWLKCGGYLVIDQAEALTAIDVNTGKFVGSTNLEDTVLRTNLDAAL 327

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           EIARQLRLR++ G+I+VDFIDM E ++ + V + L++ +KKD+ +  +  I+  GL+EM+
Sbjct: 328 EIARQLRLRNIGGIIIVDFIDMLEDEHRQKVLEVLEKEIKKDKTKTNLLGITQLGLVEMT 387

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+++R S+ E   K C YC+G G + S+ +V +     + +   Q  A  I+V  +  V 
Sbjct: 388 RKKVRPSLSEMLQKPCPYCEGRGKVLSEETVGIYFKNEIYQLSRQTPADTILVEANPLVA 447

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             L+    + + + E + G ++ +        +   I
Sbjct: 448 ARLIGSGGSNLRDLENKTGKNLYIRGSANYHIESVKI 484



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++++    EETRV VL D    E+  E    ++++GNI+  KV  V P +QAAFVD
Sbjct: 1  MLKEIVVNVGE-EETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G +++ FL   +
Sbjct: 60 IGLDKNAFLYVED 72


>gi|220935439|ref|YP_002514338.1| ribonuclease G [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996749|gb|ACL73351.1| ribonuclease G [Thioalkalivibrio sp. HL-EbGR7]
          Length = 493

 Score =  254 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 122/398 (30%), Positives = 217/398 (54%), Gaps = 1/398 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            IQ++++  Q +LVQ++K+  G KGA +TTY+++  RY VLMPN       +R       
Sbjct: 93  PIQKLLREGQDVLVQVIKDPIGTKGARLTTYITVPSRYLVLMPNNPTIGVSTRIEDEAER 152

Query: 229 RKNLKEIARGL-EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            +    +   L +   G G I+RTA  + ++  ++ D ++L +LW ++ E          
Sbjct: 153 ARLKGFMESVLADKSEGHGFIVRTAADAASEEAMRNDVDFLHKLWHSISERVKQVPPGSE 212

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           VY +  L  R +RD+   ++ +I +   +  ++  +F +  +P     +  Y    PIF 
Sbjct: 213 VYTDLPLTLRILRDMVGVELEKIRIDSRETVQKVTEFAESYVPELLGRIEHYPGERPIFD 272

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              +E ++    + +V L S GY+I +QTEA+ +ID+N+G       +E+T  +TNLEAA
Sbjct: 273 LYNVEDEIQKALERKVELKSGGYLIFDQTEAMTTIDINTGAFVGHRNLEETIFKTNLEAA 332

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + IARQLRLR+L G+I++DFIDM + ++ R V + L+++L+KD A+ Q+  +S  GL+EM
Sbjct: 333 QAIARQLRLRNLGGIIIIDFIDMTQDEHKRQVFRALEKALEKDHAKSQLCEVSPLGLVEM 392

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+     + C  C G GY++S  +V   + R +     Q+ A  ++V     V
Sbjct: 393 TRKRTRESLERILCEPCVTCSGRGYLKSAETVCYEMFREIMREARQFDAKELLVMASQTV 452

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  LL+++ A++ + +   G+ I   +      + F +
Sbjct: 453 VDLLLDEESASVAQLQEFIGIPIRFQVESLYTQEQFDV 490



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +  +ETRV ++ +  + EL+ E   ++ + GNIY  +V+RV P + AAFVD
Sbjct: 2  MGTEILMNVT-PQETRVALVENGVLVELNMERARRRGLVGNIYKGRVSRVLPGMDAAFVD 60

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R  FL   ++ P
Sbjct: 61 IGLERAAFLHASDVAP 76


>gi|258544824|ref|ZP_05705058.1| ribonuclease G [Cardiobacterium hominis ATCC 15826]
 gi|258519929|gb|EEV88788.1| ribonuclease G [Cardiobacterium hominis ATCC 15826]
          Length = 487

 Score =  254 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 208/397 (52%), Gaps = 2/397 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I +V++  Q LLVQ++K+  G+KGA +T  +S+  R+ V +P   +   +S KI +   R
Sbjct: 89  ISDVLREGQSLLVQVLKDPIGSKGARLTMEISIPSRFLVFLPTADEIG-VSIKIASEEQR 147

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           + L+E   G       G I+RTA  S     ++ D +YL R+W+ + +    +    L+Y
Sbjct: 148 QTLREAVAGFHQGRQGGFIVRTAIESADVWAMRADMQYLQRVWEAIVQQQRGARPGSLIY 207

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV-RQYEDPHPIFFR 348
            E  L ++ +RD     +  ++V     +RE + F    +    +     Y     +F R
Sbjct: 208 GELPLYQKVLRDFVSPGVRRVVVDHPGAHREMQAFAANFLVGMEQTRLEFYSGDRSLFER 267

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            GIE ++    +  V L S GY+II+QTEA+ +IDVN+G    +   +DT  +TNLEAA 
Sbjct: 268 YGIEEEISLALKRHVALKSGGYLIIDQTEAMTTIDVNTGAFVGKLSQDDTIYKTNLEAAR 327

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            IARQLRLR+L G+I++DFIDM + ++ + V   L  +L  DR++  +  IS  G++EM+
Sbjct: 328 AIARQLRLRNLGGIIMLDFIDMNDPEHQQGVMDALLTALAGDRSKYTISPISPLGIIEMT 387

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+R R S+ +   + C  C+G GY+++  ++   + R +      ++   + +    +++
Sbjct: 388 RKRTRESLRQLMCEPCPCCQGRGYVKTVETITYELFRDLMREARDFSPKTMTIVAGLELI 447

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            ++  ++  T  + +A   + I + +        + I
Sbjct: 448 DFIREEESLTFSDLQALLKIPIRLQVDSAYRHGQYDI 484


>gi|268590762|ref|ZP_06124983.1| ribonuclease G [Providencia rettgeri DSM 1131]
 gi|291313537|gb|EFE53990.1| ribonuclease G [Providencia rettgeri DSM 1131]
          Length = 489

 Score =  254 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 131/413 (31%), Positives = 202/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E++K  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE         G G I+RTA     + E+K+D  +L RLW
Sbjct: 136 ASHVGVSQRIESEDERER-LKECVSQYCDENG-GFIIRTAAEGVGEEEVKQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +V    +Y E  L  R IRD     +  I V     Y + ++F++  +P  
Sbjct: 194 AKVIERKKRNVTRTKIYGELALAYRIIRDFAGAHLDRIRVDSRLTYTQLQEFIEEYVPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y+   PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V   L+++L KD+ 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMADPEHRRRVLASLEQALSKDKV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +V+    VV  L   +   + E E   G  + V      + + F +
Sbjct: 434 TIDADRFLVYASQAVVDVLKGDESHALAEVEIFVGKQVKVQTEPLYSQERFDV 486


>gi|77748673|ref|NP_643079.2| ribonuclease G [Xanthomonas axonopodis pv. citri str. 306]
          Length = 499

 Score =  254 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|323178584|gb|EFZ64160.1| ribonuclease G [Escherichia coli 1180]
          Length = 437

 Score =  254 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 24  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 83

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 84  ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 141

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 142 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 201

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 202 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 261

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 262 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 321

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 322 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 381

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 382 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 434


>gi|170717718|ref|YP_001783500.1| ribonuclease G [Haemophilus somnus 2336]
 gi|168825847|gb|ACA31218.1| ribonuclease, Rne/Rng family [Haemophilus somnus 2336]
          Length = 492

 Score =  254 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 208/414 (50%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                +   +K      I +++   Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 78  HTECVDVDEQKQFVVKDIAQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 137

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+   L    G G I+RTA    T+ E+ +D E+L RLW
Sbjct: 138 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAAEGATETELVQDAEFLKRLW 195

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    + S+I +  +  + E K F +  MP  
Sbjct: 196 RKVLERRAKYTTRSMLYGELALTQRILRDFIGANFSKIHIDSKLCFSEVKQFTEEFMPEL 255

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    P+F    +E  + +   + V L S GY+II QTE++ +ID+N+G     
Sbjct: 256 TDKLVLYSGSQPLFDVYSVENAIQTALNSRVNLKSGGYLIIEQTESMTTIDINTGAFVGH 315

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+ +++   V + L+ +L KDR 
Sbjct: 316 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTEEHRDRVLESLRLALSKDRV 375

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 376 KTNVNGFTQLGLVEMTRKRTRESLEHILCDECPTCSGRGSVKTVETVCYEIMREIIRVNH 435

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   +V+    V  YL+N++    + E E   G  I +   +  + + F +
Sbjct: 436 LFASEKFVVYASRAVADYLINEESHGLLAELEVFIGKQIQIKTEVYYSQEQFDV 489



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M + ++L + +   ETR+ ++ +  ++E+  E + K+   GNIY  +VTRV P +Q+AFV
Sbjct: 2  MESVELLANIT-PSETRIALVDNGILKEVHIERQAKRGSVGNIYKGRVTRVLPGMQSAFV 60

Query: 60 DYGGNRHGFLPFLEIHP 76
          D G  +  FL   +I  
Sbjct: 61 DIGLEKAAFLHASDIVS 77


>gi|119470454|ref|ZP_01613182.1| ribonuclease G [Alteromonadales bacterium TW-7]
 gi|119446379|gb|EAW27655.1| ribonuclease G [Alteromonadales bacterium TW-7]
          Length = 490

 Score =  254 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 138/484 (28%), Positives = 240/484 (49%), Gaps = 7/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E + +    G++ +     +      A F     E++    
Sbjct: 11  PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +D+V++   V+G          K+   I+E+++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 70  ASDIVNSASIVEGVDD----VPIKKVQDIRELVRQGQYIMVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           +  RY V MP+ +      R  T     + LK+I        G   I+RTA    ++ E+
Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERSR-LKKIVAEYGDENG-SFIVRTAAEGASEAEL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  +L +LW+ +      +    +++E+  L  R +RD   +D+  I V  +  Y+E 
Sbjct: 184 RHDAGFLRKLWEKITARRKKTSKATILHEDLTLAFRTLRDYVGEDMERIRVDSKLTYQEL 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F +  +P  ++++  Y    PIF    +E ++      +VTL S GY+II+QTEA+ +
Sbjct: 244 KIFTEEFVPQLSQVLEYYPGERPIFDLFDVENEVQKALHRKVTLKSGGYIIIDQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVN+G       +E+T   TN+EA   IARQLRLR+L G+I++DFIDM  +++   V  
Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSEEHKSRVLH 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +L KDR +  +  +S  GL+EM+R+R R S+      VC  C G G  ++  +V  
Sbjct: 364 SLESALAKDRTKTNINGLSALGLVEMTRKRTRESLEHILCDVCPACSGRGSQKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR +      Y A   +V+    V   LLN +   + E E   G  +++      + +
Sbjct: 424 EILREIVRVNRAYAADKFMVYAAPAVSEALLNDEYHNLAELELFIGKQVHIQTESLYSQE 483

Query: 562 LFYI 565
            F +
Sbjct: 484 QFDV 487


>gi|22124116|ref|NP_667539.1| ribonuclease G [Yersinia pestis KIM 10]
 gi|45443606|ref|NP_995145.1| ribonuclease G [Yersinia pestis biovar Microtus str. 91001]
 gi|51597852|ref|YP_072043.1| ribonuclease G [Yersinia pseudotuberculosis IP 32953]
 gi|108809673|ref|YP_653589.1| ribonuclease G [Yersinia pestis Antiqua]
 gi|108813662|ref|YP_649429.1| ribonuclease G [Yersinia pestis Nepal516]
 gi|145597592|ref|YP_001161668.1| ribonuclease G [Yersinia pestis Pestoides F]
 gi|153949561|ref|YP_001399395.1| ribonuclease G [Yersinia pseudotuberculosis IP 31758]
 gi|153997392|ref|ZP_02022492.1| ribonuclease G [Yersinia pestis CA88-4125]
 gi|162419477|ref|YP_001605736.1| ribonuclease G [Yersinia pestis Angola]
 gi|165927569|ref|ZP_02223401.1| ribonuclease G [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937500|ref|ZP_02226063.1| ribonuclease G [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011413|ref|ZP_02232311.1| ribonuclease G [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214165|ref|ZP_02240200.1| ribonuclease G [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402019|ref|ZP_02307502.1| ribonuclease G [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420718|ref|ZP_02312471.1| ribonuclease G [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167425585|ref|ZP_02317338.1| ribonuclease G [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167466827|ref|ZP_02331531.1| ribonuclease G [Yersinia pestis FV-1]
 gi|170022720|ref|YP_001719225.1| ribonuclease G [Yersinia pseudotuberculosis YPIII]
 gi|186897046|ref|YP_001874158.1| ribonuclease G [Yersinia pseudotuberculosis PB1/+]
 gi|218930680|ref|YP_002348555.1| ribonuclease G [Yersinia pestis CO92]
 gi|229836817|ref|ZP_04456982.1| RNase G [Yersinia pestis Pestoides A]
 gi|229839284|ref|ZP_04459443.1| RNase G [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899847|ref|ZP_04514988.1| RNase G [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904158|ref|ZP_04519269.1| RNase G [Yersinia pestis Nepal516]
 gi|270488601|ref|ZP_06205675.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294505262|ref|YP_003569324.1| ribonuclease G [Yersinia pestis Z176003]
 gi|21956869|gb|AAM83790.1|AE013620_1 cytoplasmic filament protein [Yersinia pestis KIM 10]
 gi|45438476|gb|AAS64022.1| ribonuclease G [Yersinia pestis biovar Microtus str. 91001]
 gi|51591134|emb|CAH22799.1| ribonuclease G [Yersinia pseudotuberculosis IP 32953]
 gi|108777310|gb|ABG19829.1| RNAse G [Yersinia pestis Nepal516]
 gi|108781586|gb|ABG15644.1| RNAse G [Yersinia pestis Antiqua]
 gi|115349291|emb|CAL22258.1| ribonuclease G [Yersinia pestis CO92]
 gi|145209288|gb|ABP38695.1| RNAse G [Yersinia pestis Pestoides F]
 gi|149289029|gb|EDM39109.1| ribonuclease G [Yersinia pestis CA88-4125]
 gi|152961056|gb|ABS48517.1| ribonuclease G [Yersinia pseudotuberculosis IP 31758]
 gi|162352292|gb|ABX86240.1| ribonuclease G [Yersinia pestis Angola]
 gi|165914605|gb|EDR33219.1| ribonuclease G [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920463|gb|EDR37740.1| ribonuclease G [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989797|gb|EDR42098.1| ribonuclease G [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204652|gb|EDR49132.1| ribonuclease G [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961524|gb|EDR57545.1| ribonuclease G [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048605|gb|EDR60013.1| ribonuclease G [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055599|gb|EDR65392.1| ribonuclease G [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169749254|gb|ACA66772.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis YPIII]
 gi|186700072|gb|ACC90701.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis PB1/+]
 gi|229678276|gb|EEO74381.1| RNase G [Yersinia pestis Nepal516]
 gi|229687339|gb|EEO79414.1| RNase G [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695650|gb|EEO85697.1| RNase G [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705760|gb|EEO91769.1| RNase G [Yersinia pestis Pestoides A]
 gi|262363325|gb|ACY60046.1| ribonuclease G [Yersinia pestis D106004]
 gi|262367297|gb|ACY63854.1| ribonuclease G [Yersinia pestis D182038]
 gi|270337105|gb|EFA47882.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294355721|gb|ADE66062.1| ribonuclease G [Yersinia pestis Z176003]
 gi|320017164|gb|ADW00736.1| RNase G [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 489

 Score =  254 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 76  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F +  +P  
Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTREYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TDKLELYTGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLR+R+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCRGRGTVKSVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|332163143|ref|YP_004299720.1| ribonuclease G [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325667373|gb|ADZ44017.1| ribonuclease G [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330862856|emb|CBX72997.1| ribonuclease G [Yersinia enterocolitica W22703]
          Length = 489

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 204/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 76  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F +  +P  
Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDFLVEFTREYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TEKLELYAGKQPIFDLYDVENEIQRSLERKVDLKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALTKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|225873291|ref|YP_002754750.1| ribonuclease, Rne/Rng family, insertion [Acidobacterium capsulatum
            ATCC 51196]
 gi|225794327|gb|ACO34417.1| ribonuclease, Rne/Rng family, insertion [Acidobacterium capsulatum
            ATCC 51196]
          Length = 1013

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 148/484 (30%), Positives = 244/484 (50%), Gaps = 2/484 (0%)

Query: 83   FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
             SD +           D +  A+     D               A  ++    +      
Sbjct: 530  VSDGEEEDAAEEEDDEDEQGFAEVSEDFDEDAAESEEESGEPRAAAPARREGRKFDRRRG 589

Query: 143  NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
                       GG       +      I +++K  Q +LVQI KE    KGA +T++++L
Sbjct: 590  RQGGGRQRHGGGGGHRRASVQTMDLPIISDLLKQGQEILVQIAKEPIAKKGARITSHIAL 649

Query: 203  AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
             GR+ V MP  +    +SRKI++  +R+ LK I    +  A  G I+RTA     + E++
Sbjct: 650  PGRFLVFMPTVNHVG-VSRKISSDEERQRLKRILISEKGDATGGFIVRTAAEGAGEDELR 708

Query: 263  RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
             D  +L+ LW+ ++E + +  AP L+Y + NL++R +RD   ++ S I V  E  Y    
Sbjct: 709  ADIRFLINLWNEIKERSDSGKAPALIYHDLNLVERILRDQVSEEFSTIWVDSETDYERIV 768

Query: 323  DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
             F+    PS  R V+ Y    P+F + GI+ ++    +++V L S G ++INQTEALV+I
Sbjct: 769  RFLNRFQPSLVRRVKLYTKEMPLFEQFGIQDEITKALKSKVWLKSGGSIVINQTEALVAI 828

Query: 383  DVNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
            D+N+G+   +    EDT ++TNL+A  EI RQ+RLRDL G+IV+DFIDM+E+KN   V +
Sbjct: 829  DINTGKYVGKTARLEDTIVKTNLDAIPEIVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQ 888

Query: 442  KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
             L+E LK DRA  +V   ++FGL+ ++R+R++ S+  + +  C  C G G ++S ++VA 
Sbjct: 889  ALEEELKHDRAPSKVLQFNDFGLVAITRKRVKQSLERTLSIPCNICTGTGMVKSPATVAN 948

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
             I   + +        ++++  + +VV  L       + E E   G +I V     L  +
Sbjct: 949  EIYVEMRKMQRHLENKDVLLRVNPEVVKTLKASGGRWLNELEEMTGKTIIVKSDPTLHPE 1008

Query: 562  LFYI 565
             F I
Sbjct: 1009 QFDI 1012



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MA ++ I +S   ETR+ +L D+++ E+ +E E++  + G+IY  +VTRV P +Q+AFVD
Sbjct: 1  MAKEICI-SSTPHETRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G  R  FL   +
Sbjct: 60 IGLERDAFLYVTD 72


>gi|113460420|ref|YP_718482.1| ribonuclease G [Haemophilus somnus 129PT]
 gi|112822463|gb|ABI24552.1| RNAse G [Haemophilus somnus 129PT]
          Length = 491

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 208/414 (50%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                +   +K      I +++   Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDVDEQKQFVVKDIAQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+   L    G G I+RTA    T+ E+ +D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAAEGATETELVQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    + S+I +  +  + E K F +  MP  
Sbjct: 195 RKVLERRAKYTTRSMLYGELALTQRILRDFIGANFSKIHIDSKLCFSEVKQFTEEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    P+F    +E  + +   + V L S GY+II QTE++ +ID+N+G     
Sbjct: 255 TDKLVLYSGSQPLFDVYSVENAIQTALNSRVNLKSGGYLIIEQTESMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+ +++   V + L+ +L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTEEHRDRVLESLRLALSKDRV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHILCDECPTCSGRGSVKTVETVCYEIMREIIRVNH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   +V+    V  YL+N++    + E E   G  I +   +  + + F +
Sbjct: 435 LFASEKFVVYASRAVADYLINEESHGLLAELEVFIGKQIQIKTEVYYSQEQFDV 488



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M + ++L + +   ETR+ ++ +  ++E+  E + K+   GNIY  +VTRV P +Q+AFV
Sbjct: 1  MESVELLANIT-PSETRIALVDNGILKEVHIERQAKRGSVGNIYKGRVTRVLPGMQSAFV 59

Query: 60 DYGGNRHGFLPFLEIHP 76
          D G  +  FL   +I  
Sbjct: 60 DIGLEKAAFLHASDIVS 76


>gi|318603973|emb|CBY25471.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 489

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 204/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 76  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F +  +P  
Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDFLVEFTREYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALTKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|242241071|ref|YP_002989252.1| ribonuclease G [Dickeya dadantii Ech703]
 gi|242133128|gb|ACS87430.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech703]
          Length = 489

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK          G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKATVADYCDEQG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 SKVMERKKRNQTRCKLYGELALAQRILRDFAGASLDRIRVDSRLTYESLLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TEKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM    + R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCHGRGSVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASPLVGDALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|327483276|gb|AEA77683.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           cholerae LMA3894-4]
          Length = 487

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 118/413 (28%), Positives = 197/413 (47%), Gaps = 4/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L +R +RD    ++++I++   + +   K+F    +P  
Sbjct: 194 SKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF     E ++    + +V L S G  II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGG--IIDQTEAMTTIDINTGAFVGR 311

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR 
Sbjct: 312 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALMKDRV 371

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +     
Sbjct: 372 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 431

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 432 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 484


>gi|126668766|ref|ZP_01739714.1| Ribonucleases G and E [Marinobacter sp. ELB17]
 gi|126626749|gb|EAZ97398.1| Ribonucleases G and E [Marinobacter sp. ELB17]
          Length = 496

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 116/403 (28%), Positives = 208/403 (51%), Gaps = 5/403 (1%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+ +++  Q L+VQ+ K+  G KGA +TT LS+  RY V MP  +      R   +  
Sbjct: 91  PDIRTLLREGQSLVVQVTKDPIGTKGARLTTQLSIPSRYLVFMPGVNHIGISQRIEDDAE 150

Query: 228 DRKNLKEI-----ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
             +    +      +   V    G I+RTA  + +  ++  D +YL RL  ++ E     
Sbjct: 151 RARLKAIVDGAASEQASSVAIQGGYIIRTAAEAASADDLTADMKYLHRLGQSINERMGKV 210

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            AP ++Y++  L  R IRDL      ++ +   + ++   +F+   +  +A  V  Y   
Sbjct: 211 QAPAVIYQDLPLFIRTIRDLIRPQTEKVRIDSRESHQRVMEFVHEFVSEFADKVEYYPGE 270

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
            PIF    +E ++      +V L S GYVII+QTEA+ +ID+N+G       +E+T  +T
Sbjct: 271 RPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAMTTIDINTGAFVGHRNLEETIFKT 330

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAA  I+RQLRLR+L G+I++DFIDM++ ++ R V + L++ L++D A+ ++  +S  
Sbjct: 331 NLEAARAISRQLRLRNLGGIIIIDFIDMDDAEHKRQVHRMLEKMLERDHAKTKITGVSEL 390

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
           GL+EM+R+R   S+ +   + C  C G G++++  +V   I R +      Y   + +V 
Sbjct: 391 GLVEMTRKRTTESLGQVLCEPCPICDGRGFLKTGETVCYEIFREILRVNRAYDTESYLVM 450

Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               VV  L++++   + + E     +I   +    + + + +
Sbjct: 451 ASQRVVDLLVDEESDNVADLETFICKTIRFQVEPFYSQEQYDV 493



 Score =  137 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV ++ +  ++E   E   +K I GNIY  KV RV P ++AAFVD
Sbjct: 1  MSEEILINVT-PVETRVALVENGMLQEAYIERASRKGIVGNIYKGKVVRVLPGMEAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   ++
Sbjct: 60 IGLERAAFIHASDV 73


>gi|218550530|ref|YP_002384321.1| ribonuclease G [Escherichia fergusonii ATCC 35469]
 gi|218358071|emb|CAQ90717.1| ribonuclease G [Escherichia fergusonii ATCC 35469]
 gi|324115150|gb|EGC09114.1| rne/Rng family protein ribonuclease [Escherichia fergusonii B253]
 gi|325498825|gb|EGC96684.1| ribonuclease G [Escherichia fergusonii ECD227]
          Length = 489

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVADYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|239906339|ref|YP_002953080.1| ribonuclease E and G family protein [Desulfovibrio magneticus RS-1]
 gi|239796205|dbj|BAH75194.1| ribonuclease E and G family protein [Desulfovibrio magneticus RS-1]
          Length = 487

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 156/395 (39%), Positives = 237/395 (60%), Gaps = 3/395 (0%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
            +  +   IQ+ +K  Q LLVQ+VKE  G+KGA +TTYLSL GRY VL P   +   +SR
Sbjct: 93  DRRPKYPPIQKALKKNQELLVQVVKEPTGHKGAFLTTYLSLPGRYFVLTPGREQRG-VSR 151

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +RK LKE+  GL++  G+G+I+RTA  S++K  ++RD  YL RLW  VR+    
Sbjct: 152 KIEDEAERKRLKEVISGLKLDEGLGLIVRTAALSQSKTSLERDLSYLKRLWKEVRQRGTT 211

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYE 340
           +  P L+Y+E +L  RA+RD    D+ EI V   +  +   +   L+ P     + +  +
Sbjct: 212 AETPSLIYQELDLSSRAVRDYLTDDVGEIWVDEPETAKRVSEMATLVYPRRPGIVKQHPD 271

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
              P++ R  +  Q++ L+  EVTLPS G ++ +  EAL ++D+NSG+   E    + AL
Sbjct: 272 VDVPLWDRFNLRKQIEQLYGREVTLPSGGVLVFDHAEALTAVDINSGKIGGESNFREMAL 331

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           +TN+EA+EE+ARQLRLRD+ G +V+DFI+M+++K+   VEK L+ + K DRAR  VG IS
Sbjct: 332 KTNIEASEEVARQLRLRDIGGQVVIDFIEMKDRKHVAEVEKTLRAAFKNDRARTDVGRIS 391

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN-I 519
            FGLLE+ RQR+ SS L  T++ C  C G+G  R+    AL++L+ +   L + ++   +
Sbjct: 392 RFGLLEIVRQRLGSSALSITSEPCPCCNGSGQRRNHEWQALTVLKDIYRQLRKDSSQETV 451

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
                 ++  YLLN KRA +   E  F   I +  
Sbjct: 452 TAKVSEELSRYLLNHKRARLSAMEEEFKKKIVINA 486



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          KM I     E+  V V  D ++ E   E  H+ + +G+IY  K+  ++P+LQAAF++YG 
Sbjct: 10 KMFISVLPGEQVEVAVAEDGQLLEYYVEMVHQAKTRGHIYKGKIHNIDPALQAAFINYGA 69

Query: 64 NRHGFLPFLEIHPDYYQIPFS 84
           R+GFL   E+HP+YYQI  +
Sbjct: 70 ERNGFLQIDEVHPEYYQIVQA 90


>gi|220904065|ref|YP_002479377.1| ribonuclease, Rne/Rng family [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
 gi|219868364|gb|ACL48699.1| ribonuclease, Rne/Rng family [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
          Length = 1076

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 160/400 (40%), Positives = 242/400 (60%), Gaps = 2/400 (0%)

Query: 158  EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
               P K K+   IQ+V+K  Q +LVQ+VKE  G+KGA +TT+LSLAGR+ VL P   +  
Sbjct: 678  HHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTTWLSLAGRFLVLTPGQEQIG 737

Query: 218  TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
             +SRK+ +  +R  L+E+  G++   G+GVI+RT  A  TK  +K D +YL R+W ++R+
Sbjct: 738  -VSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKTTLKNDLQYLKRVWRDIRK 796

Query: 278  LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
             A    AP L+Y+E  L +RA+RD    D+ EI V  E   +  ++ + LL P  + +VR
Sbjct: 797  KATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQSIRETVNLLFPRKSDLVR 856

Query: 338  QY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             + +    ++ R  +  QLD ++  EV LPS G ++ +QTEAL+++D+NSG+ + +   E
Sbjct: 857  LHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTEALMAVDINSGKISGKGNFE 916

Query: 397  DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
              A +TN+EAAE IAR L+LRD+ G +V+DFI+M +KK+   VEK L+ ++K DRAR  V
Sbjct: 917  AMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHIIEVEKTLRSAMKNDRARHDV 976

Query: 457  GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
            G +S FGLLE+ RQR  SS L  T + C  C G G  R+    AL  LR +   L   + 
Sbjct: 977  GRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLEWQALQALRELRRMLRAESK 1036

Query: 517  HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
               +  T +++ LYLLN KR ++ E E  +G  + + +  
Sbjct: 1037 EKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP 1076



 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +M I     E+  V +  D ++ E   +  H+++IKGNIY   +  ++ +LQAAFV YG
Sbjct: 599 RRMFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYG 658

Query: 63  GNRHGFLPFLEIHPDY 78
             ++GFL   EIHP+Y
Sbjct: 659 AGKNGFLQIDEIHPEY 674


>gi|323699234|ref|ZP_08111146.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. ND132]
 gi|323459166|gb|EGB15031.1| ribonuclease, Rne/Rng family [Desulfovibrio desulfuricans ND132]
          Length = 488

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 248/476 (52%), Gaps = 7/476 (1%)

Query: 81  IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
           +P    + ++ E          +                  +    A F     E +   
Sbjct: 14  LPGEQVEVVIAEEGKVNEYYVEMVHQAKTKGNIYKGYIHNIDNGLQAAFINYGAERNGFL 73

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
             ++V       +  + +       ++      +K  Q +LVQ+VKE  G KGA +T+YL
Sbjct: 74  QIDEVHPEYYINEVPTKKGQRFPLMQKV-----LKPGQEVLVQVVKEPTGKKGAFLTSYL 128

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SL GR  V     S+   +SRKI +  +R  LK    G E   G+G+I RTA   ++K  
Sbjct: 129 SLPGRCFVYTVGRSQIG-VSRKIEDEKERDRLKTALEGFETAEGVGLIARTAAVGQSKAA 187

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           ++RDF+YL RLW ++R  A    AP  VY+E  L  RA+RD    DI+EI V  ++ Y +
Sbjct: 188 LERDFKYLNRLWTDIRANAQKVKAPAPVYQELGLAARAVRDYLTLDITEIWVDDKETYEQ 247

Query: 321 AKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
              F+KL  P    +VR + ++   +  R  +  Q++ ++  E ++PS G ++ + TEAL
Sbjct: 248 VHQFVKLAFPRKNNLVRLHEDNELSLLERFNLVKQVEEIYSREASMPSGGRLVFDATEAL 307

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            ++D+NSG+   E   +  AL+TN+EAA EIARQLRLRD+ G +V+DFI+M+  K+ R V
Sbjct: 308 TAVDINSGKIGGEKNFQKMALKTNVEAAREIARQLRLRDIGGQVVIDFIEMKNPKDCREV 367

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           EK ++  +K DRAR  V  IS+FGL+E+ RQR+ SS +  +T+ C  CKG G  R+    
Sbjct: 368 EKVMRAEMKNDRARTDVSRISSFGLMELVRQRLGSSAIAISTEPCPCCKGTGIRRNMEWQ 427

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
           AL  L+ +   L +  +  +      ++ +YLLN KR  + + E R+  +I++ I 
Sbjct: 428 ALQALKDIHRDLRKPGSDEVQYDCEEELAIYLLNNKRGILADLEKRYEKTIHIDIE 483



 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 1  MANK----MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56
          M  K    M I     E+  VV+  + +V E   E  H+ + KGNIY   +  ++  LQA
Sbjct: 1  MTKKKRQKMFISVLPGEQVEVVIAEEGKVNEYYVEMVHQAKTKGNIYKGYIHNIDNGLQA 60

Query: 57 AFVDYGGNRHGFLPFLEIHPDYY 79
          AF++YG  R+GFL   E+HP+YY
Sbjct: 61 AFINYGAERNGFLQIDEVHPEYY 83


>gi|88858680|ref|ZP_01133321.1| RNase G (ribonuclease G) [Pseudoalteromonas tunicata D2]
 gi|88818906|gb|EAR28720.1| RNase G (ribonuclease G) [Pseudoalteromonas tunicata D2]
          Length = 490

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 128/405 (31%), Positives = 209/405 (51%), Gaps = 2/405 (0%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
            +  K+   I+E+++  Q ++VQ+VK+  G KGA +TT +++  RY V MP+ +      
Sbjct: 85  EQPIKKVQDIRELVRQGQQIMVQVVKDPLGTKGARLTTEITIPSRYLVFMPDATHVGVSQ 144

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           R  T+    + LK+I        G G I+RTA     ++E+  D ++L +LW  V     
Sbjct: 145 RIETDEERSR-LKKIVAEYNDEEG-GFIVRTAAEGACEVELAHDAKFLKKLWKKVIAKRK 202

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            +    L++++  L  R +RD   +D+  I V  +  ++E K F +  +P     +  Y 
Sbjct: 203 AARKETLLHDDLTLAFRTLRDYVGEDMERIRVDSKLAFQELKAFTEEFVPELTATLEYYP 262

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
              PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G       +E+T  
Sbjct: 263 GERPIFDLFDVENEVQKALHRKVELKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIF 322

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
            TN+EA + IARQLRLR+L G+I++DFIDM    + R V   L+ +L+KDRA+  +   S
Sbjct: 323 NTNIEATQAIARQLRLRNLGGIIIIDFIDMTTADHKRRVLHSLEVALQKDRAKANINGFS 382

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
             GL+EM+R+R R S+      +C  C G G +++  +V   ILR +      Y A   +
Sbjct: 383 ALGLVEMTRKRTRESLGHILCGICPVCDGRGALKTVETVCYEILREIVRVNRAYAADKFV 442

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+    V   LLN +   + E E   G  I + I      + F +
Sbjct: 443 VYASQAVSEALLNDEYHNLAELELFIGKPIKIQIESLYNQEQFDV 487


>gi|114331600|ref|YP_747822.1| ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91]
 gi|114308614|gb|ABI59857.1| RNAse G [Nitrosomonas eutropha C91]
          Length = 483

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 232/469 (49%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156
           Q    A+ +     ++ I    SL  V  I N         + SA  D+          +
Sbjct: 12  QETRVAIIEQGITQELHIERTSSLGIVGNIYNGRVSRVLPGMQSAFIDIGLERAAFLHVA 71

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
                 + +    I++++     +LVQ+VK+  G KGA ++T +SLAGR  V +P  S  
Sbjct: 72  DIHESGQTEHNKPIEQLLSEGSNILVQVVKDAIGVKGARLSTQISLAGRLLVYLPQESYI 131

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
               R   N       +++   L   +  G I+RT   +  + E++ D +YL +LW +++
Sbjct: 132 GVSQRIEDNNERESLRQKLQSILPPDSSGGYIIRTMAETADESELQADIDYLHKLWQDIQ 191

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           + +L    P L+Y++ +L  R +RD    D   + +   + +++   F +  M S    +
Sbjct: 192 KKSLTISPPSLLYQDLDLSHRVLRDFVNADTYRVRIDSRETHQKLTTFAQEYMMSDMEKI 251

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             Y    P+F   G+E +++      V L S GYVII+QTEAL ++DVN+G        +
Sbjct: 252 SHYTGERPLFDLYGVEQEIEKSLARRVDLKSGGYVIIDQTEALTTMDVNTGGFVGVRNFD 311

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           DT  +TNLEAA+ IARQLRLR+L G+I++DFIDM+ +++  +V  +  ++L+KDR ++ V
Sbjct: 312 DTIFKTNLEAAQVIARQLRLRNLGGIIIIDFIDMDREEHRAAVLAEFNKTLQKDRTKMTV 371

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
              +  GL+EM+R+R R S+ +   + C  C+G G IR+  ++   ILR +     Q+ A
Sbjct: 372 NDFTALGLIEMTRKRTRESLAQILCETCPTCQGRGEIRTAQTICYEILRELLRESRQFNA 431

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               +     V+   L+++  ++ +        I + +G     + + +
Sbjct: 432 KEYRILASQQVIDLFLDEESQSLAQLGDFIAKPIGLQVGTTYTQEQYDV 480


>gi|212711065|ref|ZP_03319193.1| hypothetical protein PROVALCAL_02134 [Providencia alcalifaciens DSM
           30120]
 gi|212686233|gb|EEB45761.1| hypothetical protein PROVALCAL_02134 [Providencia alcalifaciens DSM
           30120]
          Length = 489

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 130/413 (31%), Positives = 202/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E++K  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE         G G I+RTA     + ++K+D  +L RLW
Sbjct: 136 ASHVGVSQRIDSEEERER-LKECVAQYCDENG-GFIIRTAAEGVAEEDVKQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +V    +Y E +L  R IRD     +  I V     Y + ++F+   +P  
Sbjct: 194 AKVIERKKRNVTRTKIYGELSLAYRIIRDFAGASLDRIRVDSRLTYSQLEEFIAEYVPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y+   PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V   L+++L KD+ 
Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSDAEHRRRVLASLEQALSKDKV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDTCPTCQGRGTVKSVETVCYEILREIVRVHR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +V+    VV  L   +   + E E   G  + V      + + F +
Sbjct: 434 TIDADRFLVYASQAVVDVLTGDESHALAEVEIFVGKQVKVQTEPLYSQERFDV 486


>gi|238764602|ref|ZP_04625548.1| Ribonuclease G [Yersinia kristensenii ATCC 33638]
 gi|238697192|gb|EEP89963.1| Ribonuclease G [Yersinia kristensenii ATCC 33638]
          Length = 441

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 204/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 28  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 87

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 88  AAHVGVSQRIESEVERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 145

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F +  +P  
Sbjct: 146 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTREYIPEM 205

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 206 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 265

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 266 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 325

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 326 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 385

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 386 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 438


>gi|123443982|ref|YP_001007952.1| ribonuclease G [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122090943|emb|CAL13825.1| ribonuclease G [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 489

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 76  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F    +P  
Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALTKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|206578309|ref|YP_002236340.1| ribonuclease G [Klebsiella pneumoniae 342]
 gi|288933327|ref|YP_003437386.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22]
 gi|290511623|ref|ZP_06550992.1| ribonuclease G [Klebsiella sp. 1_1_55]
 gi|206567367|gb|ACI09143.1| ribonuclease G [Klebsiella pneumoniae 342]
 gi|288888056|gb|ADC56374.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22]
 gi|289776616|gb|EFD84615.1| ribonuclease G [Klebsiella sp. 1_1_55]
          Length = 489

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESEAERER-LKKVVADYCDEQG-GFIIRTAAEGVHEQEMAADAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAHLDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G ++S  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKSVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|78355584|ref|YP_387033.1| ribonuclease E [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217989|gb|ABB37338.1| RNAse E [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]
          Length = 486

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 248/415 (59%), Gaps = 2/415 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +  +    +  S    P K K+   +Q+V+K  Q +LVQ+VKE  G+KGA +T+
Sbjct: 69  AEKNGFLQVDEVHPEYYSAPHDPSKGKKYPLLQKVLKAGQEVLVQVVKEPTGSKGAFLTS 128

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSL GR+ VL P   +   +SRK+ +  +R  L+ +  G     G+G+I+RT    ++K
Sbjct: 129 YLSLPGRFLVLTPGREQIG-VSRKVESEEERVRLRALLEGATPGPGLGLIVRTVSVGQSK 187

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             I+RD ++L RLW +VR+      AP L+Y+E +L  RA+RD    D+ E+ V  E+  
Sbjct: 188 TSIQRDLQFLKRLWKDVRKKGTVEKAPSLIYKELDLAARAVRDYLTDDVGEVWVDDEQTA 247

Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
              ++F  ++ P    +V+++ +    ++ R  ++ QLD ++  EV+LPS G ++ +QTE
Sbjct: 248 DAVQEFAAIVFPRRTNLVKRHKDTDRTLWERFSMQKQLDQIYSREVSLPSGGRLVFDQTE 307

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL++ID+NSG+   +   E  AL+TN+EAAE IA+QL+LRD+ G IVVDFI+M ++ + R
Sbjct: 308 ALMAIDINSGKIAGKTNFESMALRTNMEAAETIAQQLKLRDIGGQIVVDFIEMRDRNHWR 367

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK L+ ++K DRAR  VG +S FGLL++ RQR+ SS L  +T+ C  CKG G  R+  
Sbjct: 368 EVEKTLRAAMKNDRARHDVGKMSRFGLLQIVRQRLGSSALSISTEPCPCCKGTGLRRNME 427

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
             A+  L+ +   L   TA ++      ++ +YLLN KR  + E E RF   I++
Sbjct: 428 WQAMQALKDIHRQLRATTASSLRWEAPEELGMYLLNHKRGHLTELENRFERDIDI 482



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 1  MAN------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54
          M        KM I     E+  VV+  +  + E   E  H+ + KGNIY   +  ++ +L
Sbjct: 1  MEKTRKGKRKMFISVLPEEQVEVVLSEEGVIVEYYVEMVHQAKTKGNIYKGIINNIDSNL 60

Query: 55 QAAFVDYGGNRHGFLPFLEIHPDYYQIP 82
          QAAFV+YG  ++GFL   E+HP+YY  P
Sbjct: 61 QAAFVNYGAEKNGFLQVDEVHPEYYSAP 88


>gi|325920743|ref|ZP_08182649.1| RNAse G [Xanthomonas gardneri ATCC 19865]
 gi|325548795|gb|EGD19743.1| RNAse G [Xanthomonas gardneri ATCC 19865]
          Length = 499

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKIVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCSGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 LGLERAAFLHANDV 73


>gi|332999323|gb|EGK18909.1| ribonuclease G [Shigella flexneri K-272]
 gi|333014692|gb|EGK34038.1| ribonuclease G [Shigella flexneri K-227]
          Length = 489

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD    ++  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++  ++ E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESLSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|152972168|ref|YP_001337314.1| ribonuclease G [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238896752|ref|YP_002921497.1| ribonuclease G [Klebsiella pneumoniae NTUH-K2044]
 gi|262042802|ref|ZP_06015955.1| ribonuclease G [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|329997564|ref|ZP_08302838.1| ribonuclease G [Klebsiella sp. MS 92-3]
 gi|150957017|gb|ABR79047.1| RNase G [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238549079|dbj|BAH65430.1| RNase G [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039869|gb|EEW40987.1| ribonuclease G [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|328538997|gb|EGF65045.1| ribonuclease G [Klebsiella sp. MS 92-3]
          Length = 489

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + E+  D  YL R+W
Sbjct: 136 ASHVGVSQRIESEAERER-LKKVVAEYCDEQG-GFIIRTAAEGVHEQEMAADAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R SV       C  C G G ++S  +V   I+R +     
Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKSVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486


>gi|78048483|ref|YP_364658.1| ribonuclease G [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036913|emb|CAJ24606.1| ribonuclease G [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 499

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 217/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  +  
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITE 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|294625522|ref|ZP_06704150.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600191|gb|EFF44300.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 499

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRGLNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + +
Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++ A + E E   G SI      +   + F +
Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|256004841|ref|ZP_05429815.1| ribonuclease, Rne/Rng family [Clostridium thermocellum DSM 2360]
 gi|255991151|gb|EEU01259.1| ribonuclease, Rne/Rng family [Clostridium thermocellum DSM 2360]
 gi|316941082|gb|ADU75116.1| ribonuclease, Rne/Rng family [Clostridium thermocellum DSM 1313]
          Length = 490

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 123/555 (22%), Positives = 232/555 (41%), Gaps = 78/555 (14%)

Query: 19  VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78
           +L D  + EL  E    +++ GNIY  +V  V P +QAAF+D G  ++ FL   +     
Sbjct: 11  LLEDRELVELFIERNDCERLVGNIYRGRVESVLPGMQAAFIDIGYEKNAFLYVGD----- 65

Query: 79  YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138
             IP                D E +  DV   ++        E    +      T+    
Sbjct: 66  -AIPQ----------KEFSEDDEEIYSDVKSYNIEEILRPGQEITVQVTKEPIGTKGP-- 112

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA-VT 197
                                       +      +  RQ++L+        ++      
Sbjct: 113 ----------------------------RVTTHITLPGRQMVLLPNADYIGISRRIEDEE 144

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
               L      + P       I R ++     ++ K     L                  
Sbjct: 145 ERAKLRKIAEKIKP--KNMGIIVRTVSEGKREEDFKNDLNFL------------------ 184

Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
                      ++LW  +++   +   P  ++++ ++I RA+RD++  +I   +++  + 
Sbjct: 185 -----------VKLWAKIKQREQSGPVPRCLHKDLSVIYRAVRDIFTWNIDRFVINDRQE 233

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           Y +  + ++++ P+    V  +     +F    I+  +      +V L   GY++I +TE
Sbjct: 234 YNKVLELVEMISPALKMRVEYFNKNIDLFEYYQIDSMIQKALAKKVWLKCGGYIVIERTE 293

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL  IDVN+G+    + +EDT L+TNL+A +EI +QLRLRD+ G+I++DFIDM + ++ +
Sbjct: 294 ALTVIDVNTGKYVGVNNLEDTVLRTNLDAVKEIGKQLRLRDIGGIIIIDFIDMHDPEHQK 353

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            V + LK+ LKKDR +  V  ++  GL+EM+R+++R  +     + C YC+G G I S  
Sbjct: 354 QVLEALKQVLKKDRTKTTVVGMTGLGLIEMTRKKVREGLESMMLQDCPYCEGRGKILSPE 413

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
           SVA ++ + + +Y  +  A+ I+V  H  V   L  +    +   +  F   + +    E
Sbjct: 414 SVARNVEKEISKYFTKTIANAIMVEVHPTVAEVLRGEDNDNLARIQNLFNKKVIIKPSAE 473

Query: 558 LADKLFYIEKGSPVQ 572
           +  +   I++     
Sbjct: 474 VGHEEVKIKEVDIDT 488


>gi|238782973|ref|ZP_04627001.1| Ribonuclease G [Yersinia bercovieri ATCC 43970]
 gi|238797926|ref|ZP_04641417.1| Ribonuclease G [Yersinia mollaretii ATCC 43969]
 gi|238716176|gb|EEQ08160.1| Ribonuclease G [Yersinia bercovieri ATCC 43970]
 gi|238718231|gb|EEQ10056.1| Ribonuclease G [Yersinia mollaretii ATCC 43969]
          Length = 441

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 28  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 87

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 88  AAHVGVSQRIESEVERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 145

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F    +P  
Sbjct: 146 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 205

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 206 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 265

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 266 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 325

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 326 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 385

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 386 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 438


>gi|166711430|ref|ZP_02242637.1| ribonuclease G [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 499

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 123/391 (31%), Positives = 211/391 (53%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P +      +R        +    
Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEVERLRLKTI 165

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           ++       G G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +L
Sbjct: 166 VSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSL 225

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E +
Sbjct: 226 PLRAVRDLIRRDVEKVKVDSNETFLQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDE 285

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           +      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQL
Sbjct: 286 IGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQL 345

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R   
Sbjct: 346 RLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVE 405

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+    ++ C  C G G I++  +V   I R +   + Q+ A  ++V   S VV  + ++
Sbjct: 406 SLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITDE 465

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + A + E E   G SI      +   + F +
Sbjct: 466 ESAAVAELEEFLGKSICFQSDDQYLQEQFDV 496



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|209694082|ref|YP_002262010.1| ribonuclease G [Aliivibrio salmonicida LFI1238]
 gi|208008033|emb|CAQ78172.1| ribonuclease G [Aliivibrio salmonicida LFI1238]
          Length = 489

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 +  K+  +   I +++   Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVSENEKRQFQVRDISQLVHQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK          G G I+RTA     + EI +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEKERNR-LKNTVSDYCDEFG-GFIIRTAAEGAKEAEISQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    S    ++Y E  L +R +RD    ++  I V  ++ + + K+F    +P  
Sbjct: 194 HKVIERRKKSKTKSMLYGELGLDQRILRDFVGTELDLIRVDSKQAFEKLKEFTTEFVPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            + +  Y    PIF     E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TKKLEYYSGDKPIFDMYETENEIQRALDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V + L  +L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMMSEEHRRRVLQVLGAALDKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +  GL+EM+R+R R S+       C  C+G G +++  SV   ILR +     
Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGQCPTCEGRGAVKTVESVCYEILREITRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 434 AYDSDKFVVYAAVAVADALQGEESHALAELELFIGKQVKIQAEPLYIQEQFDV 486


>gi|315125438|ref|YP_004067441.1| ribonuclease G [Pseudoalteromonas sp. SM9913]
 gi|315013951|gb|ADT67289.1| ribonuclease G [Pseudoalteromonas sp. SM9913]
          Length = 490

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 243/484 (50%), Gaps = 7/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E + +    G++ +     +      A F     E++    
Sbjct: 11  PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +D+V++   V+G   E +     +   I+E+++  Q ++VQ+VK+  G+KGA +TT ++
Sbjct: 70  ASDIVNSASIVEGVDDEPIK----KVQDIRELVRQGQYIMVQVVKDPLGSKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           +  RY V MP+ +      R  T     + LK+I        G   I+RTA    ++ E+
Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERAR-LKKIVAEYGDENG-SFIVRTAAEGASEAEL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + D  +L +LWD +      +    +++E+  L  R +RD   +D+  I V  +  Y+E 
Sbjct: 184 RHDAAFLKKLWDKIVSRRRKTSKASILHEDLTLAFRTLRDYVGEDMERIRVDSKLTYQEL 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F +  +P  ++++  Y    PIF    +E ++      +VTL S GY+II+QTEA+ +
Sbjct: 244 KLFTEEFVPLLSQVLEYYPGERPIFDLFDVESEIQKALHRKVTLKSGGYLIIDQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVN+G       +E+T   TN+EA   IARQLRLR+L G+I++DFIDM   ++ R V  
Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSDEHKRRVMH 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+ +L KDRA+  +  +S  GL+EM+R+R R S+      VC  C G G  ++  +V  
Sbjct: 364 SLESALDKDRAKSNINGLSALGLVEMTRKRTRESLEHVLCDVCPACSGRGSQKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            ILR +      Y A   +V+    V   LLN +   + E E   G  +N+      + +
Sbjct: 424 EILREIVRVNRAYDADKFVVYASPAVCEALLNDEYHNLAELELFIGKQVNIQTESLYSQE 483

Query: 562 LFYI 565
            F +
Sbjct: 484 QFDV 487


>gi|183597978|ref|ZP_02959471.1| hypothetical protein PROSTU_01328 [Providencia stuartii ATCC 25827]
 gi|188022751|gb|EDU60791.1| hypothetical protein PROSTU_01328 [Providencia stuartii ATCC 25827]
          Length = 489

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 133/413 (32%), Positives = 205/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E++K  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE         G G I+RTA     + E+K+D  +L RLW
Sbjct: 136 ASHVGVSQRIESESERER-LKECVSQYCDENG-GFIIRTAAEGVGEDEVKQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +V    +Y E +L  R IRD     +  I V     Y+E ++F++  +P  
Sbjct: 194 AKVIERKKRNVTRTKIYGELSLAYRIIRDFAGASLDRIRVDSRLTYKELQEFIEEYVPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y+   PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V   L+++L KD+ 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSDIEHRRRVLASLEQALSKDKV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+      VC  C+G G ++S  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDVCPTCQGRGTVKSVETVCYEILREIVRVHR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +V+    VV  L   +   + E E   G  + V      + + F +
Sbjct: 434 TIDADRFLVYASQSVVDALTGDESHALAEVEIFVGKQVKVQTESLYSQEQFDV 486


>gi|238789801|ref|ZP_04633583.1| Ribonuclease G [Yersinia frederiksenii ATCC 33641]
 gi|238722160|gb|EEQ13818.1| Ribonuclease G [Yersinia frederiksenii ATCC 33641]
          Length = 437

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 24  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 83

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 84  AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 141

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F    +P  
Sbjct: 142 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 201

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 202 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 261

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 262 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 321

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 322 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 381

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 382 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 434


>gi|52424833|ref|YP_087970.1| ribonuclease G [Mannheimia succiniciproducens MBEL55E]
 gi|52306885|gb|AAU37385.1| CafA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 491

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 123/414 (29%), Positives = 204/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K      I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDESEQKQFIVKDIAELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    T+ E+K+D ++L RLW
Sbjct: 137 NSHVGVSQRIESEDERAR--LKALVEPYCDELGGFIIRTAAEGATEDELKQDADFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         ++Y E  L  R +RD     I +I +  +  + E  +F +  MP  
Sbjct: 195 RKVMERKAKYPTRSMLYGELALALRVLRDFVGAGIEKIRIDSKLCFTEVNEFCEEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    P+F   G+E  +       V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 VDKLVLYSGNQPLFDVYGVETAIQIALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L+E+L KDR 
Sbjct: 315 RNLEETIFNTNIEATQAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVIQSLEEALSKDRV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C+G G++++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCGECPACQGRGHVKTVETVCYEIMREIIRVHH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++    I E E   G  + V   +      F +
Sbjct: 435 LFSSEQFVVYASRAVSEYLINEESHGLIAELEVFIGKQVQVKTEVYYNQDQFDV 488



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M + ++L++ +   ETR+ ++    ++E+  E + K+ I GNIY  +VTRV P +Q+AFV
Sbjct: 1  MNSVELLVNVT-PNETRIALVDTGILKEVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFV 59

Query: 60 DYGGNRHGFLPFLEIHP 76
          D G  +  FL   +I  
Sbjct: 60 DIGLEKAAFLHASDIVS 76


>gi|253991173|ref|YP_003042529.1| ribonuclease G [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782623|emb|CAQ85787.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein)
           [Photorhabdus asymbiotica]
          Length = 489

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGEEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK I        G G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEDERNR-LKNIVADYCDEHG-GFIIRTAAEGVGDDELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +V  + +Y E  L  R +RD     +  I V     + + ++F+   +P  
Sbjct: 194 SKVIERKKRNVTKNKLYGELALAHRILRDFAGTALDRIRVDSRLMFNQLQEFISEYIPKM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELYNGNQPIFDLFDVENEVQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNSEDHRRRVLASLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G ++S  +V   I+R +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHILCDDCPTCHGRGTVKSVETVCYEIMREIVRVHR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +++    VV  L  ++   + E E   G  + V      + + F +
Sbjct: 434 AVDADRFLIYASPAVVEALKGEESHALAEVEIFVGKQVKVQTEQLYSQEQFDV 486


>gi|30248372|ref|NP_840442.1| ribonuclease E/G [Nitrosomonas europaea ATCC 19718]
 gi|30138258|emb|CAD84266.1| S1 RNA binding domain:Ribonuclease E and G [Nitrosomonas europaea
           ATCC 19718]
          Length = 481

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 120/407 (29%), Positives = 212/407 (52%)

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
               +      I++++     +LVQ+VK+  G KGA ++T +SLAGR  V +P  S    
Sbjct: 72  HESSQNDHHKPIEQLLSEGSNILVQVVKDAIGVKGARLSTQVSLAGRLLVYLPQESYIGV 131

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
             R   N       +++   L   +  G I+RT   +  + E++ D  YL +LW ++++ 
Sbjct: 132 SQRIEDNSERESLRQKLQNILPPDSTGGYIIRTMAETAEEPELQADIVYLHKLWQDIQKK 191

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
           +L   +P L+Y++ +L  R +RD    D   + V   + +++   F    M S    +  
Sbjct: 192 SLTISSPSLLYQDLDLSLRVLRDFVNADTYRVRVDSRETFQKLTTFAHEYMMSDLEKISH 251

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y    P+F   G+E +++      V L S GYVII+QTEAL ++DVN+G        +DT
Sbjct: 252 YIGERPLFDLYGVEQEIEKSLARRVDLKSGGYVIIDQTEALTTMDVNTGGFVGIRNFDDT 311

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEAA+ IARQLRLR+L G+I++DFIDM+ +++  +V  +  ++L+KDR ++ V  
Sbjct: 312 IFKTNLEAAQVIARQLRLRNLGGIIIIDFIDMDREEHRAAVLAEFNKALQKDRTKMTVNG 371

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            +  GL+EM+R+R R S+ +   + C  C+G G IR+  ++   ILR +     Q+ A  
Sbjct: 372 FTALGLVEMTRKRTRESLAQILCETCPTCQGRGEIRTAQTICYEILRELLRESRQFDAKE 431

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +     V+   L+++  ++ +        I + +G     + + +
Sbjct: 432 FRILASQPVIDLFLDEESQSLAQLGDFIARPIGLQVGASYTQEQYDV 478



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%)

Query: 10 SHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69
          S  +ETRV ++     +EL  E    + I GNIY  +V+RV P +Q+AF+D G  R  FL
Sbjct: 7  SPPQETRVAIIEHGITQELHIERTSSRGIVGNIYNGRVSRVLPGMQSAFIDIGLERAAFL 66

Query: 70 PFLEIH 75
             +IH
Sbjct: 67 HVADIH 72


>gi|251791389|ref|YP_003006110.1| ribonuclease G [Dickeya zeae Ech1591]
 gi|247540010|gb|ACT08631.1| ribonuclease, Rne/Rng family [Dickeya zeae Ech1591]
          Length = 489

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK+         G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVADYCDEQG-GFIIRTAAEGVGEEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L  R +RD     +  I V  +  Y    +F    +P  
Sbjct: 194 TKVMERKKRNQTKCKLYGELALAHRILRDFAGASLDRIRVDSKLTYDSLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMANEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G +++  +V   I+R +     
Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCRGRGSVKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASPAVGEALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|56477682|ref|YP_159271.1| ribonuclease G (RNase G) [Aromatoleum aromaticum EbN1]
 gi|56313725|emb|CAI08370.1| ribonuclease G (RNase G) [Aromatoleum aromaticum EbN1]
          Length = 484

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/410 (29%), Positives = 200/410 (48%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                         I+ ++   Q L VQ++K+  G KGA ++T +S+AGR  V +P    
Sbjct: 72  DIWSDRHNGDAGRPIERILAEGQNLTVQVLKDPIGTKGARLSTQISIAGRLLVYLPQEKH 131

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R           + + R +      G I+RT   S +  E+  D  YL +LW  +
Sbjct: 132 IGISQRIEDESEREALRERLTRLVPADEAGGFIVRTMAESASDDELGADIGYLRKLWSEI 191

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           R  A     P L+YE+  L +R +RDL   D S I+V   + +++   F     P    +
Sbjct: 192 RNSATGRFPPSLLYEDLGLGQRVLRDLVDDDTSRILVDSRENHQKLTAFAAEYSPKVLPL 251

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F    +E ++       V+L S GY+II+QTEA+ +IDVN+G        
Sbjct: 252 LEHYSGERPLFDLHNVEDEIQKALARRVSLKSGGYLIIDQTEAMTTIDVNTGGFVGARNF 311

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G+I++DFIDME  ++   V  + +++L +D  ++ 
Sbjct: 312 DDTIFKTNLEAAQTIARQLRLRNLGGIIIIDFIDMENVEHRDMVLDEFQKALARDHTKMT 371

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C G G +++  +V   ILR +     Q+ 
Sbjct: 372 VNGFTALGLVEMTRKRTRESLAHLLCEPCPTCDGRGEVKTARTVCYEILRELLREARQFN 431

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A    V    +V+   L+++  ++       G  I++      + + F I
Sbjct: 432 AREFRVLAAPNVIDLFLDEESQSLAMLSDFIGKQISLHPEASYSQEQFDI 481



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ + LI+ +  +ETRV ++    V+EL  E    + I GNIYL +V RV P +Q+AF+D
Sbjct: 1  MSIEFLINFT-PQETRVAIVEQGVVQELHVERTASRGIVGNIYLGRVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  R  FL   +I  D
Sbjct: 60 IGLERTAFLHVADIWSD 76


>gi|145641361|ref|ZP_01796940.1| ribonuclease G [Haemophilus influenzae R3021]
 gi|145273904|gb|EDK13771.1| ribonuclease G [Haemophilus influenzae 22.4-21]
          Length = 491

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERTR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|229846795|ref|ZP_04466902.1| ribonuclease G [Haemophilus influenzae 7P49H1]
 gi|229810284|gb|EEP46003.1| ribonuclease G [Haemophilus influenzae 7P49H1]
 gi|309973035|gb|ADO96236.1| Ribonuclease G [Haemophilus influenzae R2846]
          Length = 491

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERTR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|304310268|ref|YP_003809866.1| Ribonuclease G (RNase G) [gamma proteobacterium HdN1]
 gi|301796001|emb|CBL44205.1| Ribonuclease G (RNase G) [gamma proteobacterium HdN1]
          Length = 492

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/400 (31%), Positives = 211/400 (52%), Gaps = 3/400 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I E++     ++VQ+ K+  G KGA +TTYLS+  RY V MP+T       R       
Sbjct: 90  NIGELVYEGHSIVVQVTKDMIGTKGARLTTYLSIPSRYLVYMPHTDHIGVSQRIEQEEER 149

Query: 229 RKN---LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
            +    ++ +  G+E     G ILRTA     +  ++ D E+L RLW ++R     +   
Sbjct: 150 ERLRSTMEHVLEGVEDVDKKGFILRTAAEGADEDSLRHDVEFLCRLWRSIRARIHMATPV 209

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            +V+ +  L  R +RD  C  + +I +   + +  A +F +  MP    ++  Y    PI
Sbjct: 210 SIVHSDLPLSLRILRDEVCPTVDKIRIDSRETHVRALEFTRDFMPHVESLIEHYPGERPI 269

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++      +V L S GY+II+QTEA+ +IDVN+G       +E+T  +TNLE
Sbjct: 270 FDLYGVENEIQKALGRQVQLKSGGYLIIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNLE 329

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+ IARQLRLR+L G+I++DFIDMEE  +   V +  ++ L++D A+ ++  +S  GL+
Sbjct: 330 AAQAIARQLRLRNLGGIIIIDFIDMEEVDHQHQVLRIFEKMLERDHAKTKITQVSELGLV 389

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EM+R+R R S+     + C  C+G G +++  ++   I R +      Y A + +V    
Sbjct: 390 EMTRKRTRESLERVLCEPCPTCQGRGTVKTAETLCYEIFREILRQSRAYEAESFLVIASQ 449

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  L++++ A + + E   G +I   +    + + F +
Sbjct: 450 AVVDRLVDEESANVADLEQFIGRTIRFQVESFYSPEHFDV 489



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +   ETR  ++ +  V+E+  E   K+ + G+I+  KV RV P +QAAFVD
Sbjct: 1  MNEEILINVT-PMETRAAIVENGVVQEIFVERSVKRGLVGSIFKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHAKDI 73


>gi|145629572|ref|ZP_01785370.1| ribonuclease G [Haemophilus influenzae 22.1-21]
 gi|145632904|ref|ZP_01788637.1| ribonuclease G [Haemophilus influenzae 3655]
 gi|145639054|ref|ZP_01794662.1| ribonuclease G [Haemophilus influenzae PittII]
 gi|260582682|ref|ZP_05850470.1| ribonuclease G and E [Haemophilus influenzae NT127]
 gi|144978415|gb|EDJ88179.1| ribonuclease G [Haemophilus influenzae 22.1-21]
 gi|144986560|gb|EDJ93126.1| ribonuclease G [Haemophilus influenzae 3655]
 gi|145272026|gb|EDK11935.1| ribonuclease G [Haemophilus influenzae PittII]
 gi|260094248|gb|EEW78148.1| ribonuclease G and E [Haemophilus influenzae NT127]
 gi|309751010|gb|ADO80994.1| Ribonuclease G [Haemophilus influenzae R2866]
          Length = 491

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|301170105|emb|CBW29709.1| ribonuclease G [Haemophilus influenzae 10810]
          Length = 491

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|238751399|ref|ZP_04612892.1| Ribonuclease G [Yersinia rohdei ATCC 43380]
 gi|238710457|gb|EEQ02682.1| Ribonuclease G [Yersinia rohdei ATCC 43380]
          Length = 466

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 53  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 112

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 113 AAHVGVSQRIESEAERDR-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 170

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  +    +F    +P  
Sbjct: 171 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTFDLLVEFTSEYIPEM 230

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 231 TEKLELYAGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 290

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 291 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 350

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 351 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 410

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 411 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 463


>gi|85058137|ref|YP_453839.1| ribonuclease G [Sodalis glossinidius str. 'morsitans']
 gi|84778657|dbj|BAE73434.1| ribonuclease G [Sodalis glossinidius str. 'morsitans']
          Length = 489

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K  +   I E+++  Q ++V++VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGEEQKNFQVRDIAELVRQGQDIMVKVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R   +    +   +           G I+RTA       E+ +D  +L RLW
Sbjct: 136 AAHVGVSQR--IDSEAERERLKQIVAQYCDEQGGFIIRTAAEGIGSEELSQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L +R +RD     +  I V     +    +F    +P  
Sbjct: 194 TKVMERKRRNQTRYRLYGELALAQRILRDFAGAALDRIRVDSRLTHELLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++  L + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLEYYSGKQPIFDLYDVENEIQRLLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  SV   I+R +     
Sbjct: 374 KTGINGFSQLGLVEMTRKRTRESIERVLCSECPTCHGRGTVKTIESVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+  + V   L + +   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASAAVGEALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|145636058|ref|ZP_01791728.1| ribonuclease G [Haemophilus influenzae PittHH]
 gi|145270580|gb|EDK10513.1| ribonuclease G [Haemophilus influenzae PittHH]
          Length = 491

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERTR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSKYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|86157124|ref|YP_463909.1| ribonuclease G [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773635|gb|ABC80472.1| RNAse G [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 868

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 146/606 (24%), Positives = 256/606 (42%), Gaps = 13/606 (2%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
           ++  I     +A  +     +    +    E         ++  E        +     +
Sbjct: 266 EKDRIQAPARDAAREARGDRERDRGDRRRDERGRRDGREGRDGREGREGREGREGREGRD 325

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
                  E+   K  +   IQ+++K  Q ++VQ+ K+  G KGA +T+++SL GR+ V M
Sbjct: 326 RNGRNGREEKRTKEAKN--IQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFM 383

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           P         R   +   R+           P G G I+RT   +    +++ D  +L++
Sbjct: 384 PTVDHIGISRRIEKDGERRR--LREIVDRMRPEGTGFIVRTVAENVEAAKLEADIRFLIQ 441

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W+++        AP L++ + +LI RA RDL+  ++ ++++     Y     F+    P
Sbjct: 442 VWNDIIRTKDKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERILRFVHDQAP 501

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                +  Y    PIF   GIE +L    Q +V L S GY+I++Q EAL +IDVNSGR  
Sbjct: 502 HLESQIESYLGEEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYV 561

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
            +  +E+T  + N+EAA+EI  QLRLR++ G+I++DFIDM++ +N   V K L+++L +D
Sbjct: 562 GKKNLEETITKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRD 621

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           +A+  V  IS  GL+EM+R+R+R SV     + C YC G G+++S+ ++A  I R +   
Sbjct: 622 KAKTNVLKISELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAYEIFREIRRE 681

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----E 566
              +    ++V++H +V   L   +R  +     RF  +I V        + F I    E
Sbjct: 682 APHFPEPVLVVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQEQFDIYGRQE 741

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +          G   GS                          +      +     E + 
Sbjct: 742 RAEQGGGAGGGGGGGGSGGGGGGGGSGSGGGGGGRDRDRGRGRDRRGGRGERNDRGERSD 801

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +  R  R     +D ++     D +      + +     E          E G    
Sbjct: 802 RNERNDRGER-----SDRNEKNDRGDRTERGERNERTERGQREDRGERGGERAEGGEPRT 856

Query: 687 TENYDV 692
                 
Sbjct: 857 APEAPA 862



 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 4/140 (2%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ++I+A+   ETRV ++ +  + E   E + +K I GNIY  +V RV P +QAAFVD G  
Sbjct: 7   LVINAAGA-ETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLE 65

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           +  FL   ++   Y    FS+   L +  + A+        +    ++      +    A
Sbjct: 66  KAAFLYVGDV---YGDPDFSEEFELTEGEHRAEVTDVPSEQEAEEAELRARTAPAEPAAA 122

Query: 125 PIANFSQETEEESIISANND 144
           P       T + S  +   +
Sbjct: 123 PAGVEGSPTVDVSPAAVPAE 142


>gi|256831109|ref|YP_003159837.1| ribonuclease, Rne/Rng family [Desulfomicrobium baculatum DSM 4028]
 gi|256580285|gb|ACU91421.1| ribonuclease, Rne/Rng family [Desulfomicrobium baculatum DSM 4028]
          Length = 490

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 163/422 (38%), Positives = 249/422 (59%), Gaps = 3/422 (0%)

Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
              A  +    V++V     +       +   +Q+V+K  Q +LVQ+VKE  G+KGA +T
Sbjct: 64  NYGAEKNGFLQVDEVHPEYYQGDVPSRGKYPPLQKVLKPGQEVLVQVVKEPTGSKGAFLT 123

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
           TYLS+ GRY VL P   +   ISRKI +  +R  LKE+   L++  G+GVI+RT   S++
Sbjct: 124 TYLSIPGRYFVLTPGREQLG-ISRKIEDEKERDRLKEVVEELKLDEGLGVIVRTVSESQS 182

Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
           K  + RD ++L RLW  +R+  ++S +P L+YEE +L  RAIRD    DI+E  V  ++ 
Sbjct: 183 KSSLSRDLQFLKRLWKEIRKKGISSESPALIYEEKDLAFRAIRDYLTPDIAECWVDDDET 242

Query: 318 YREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
            ++  DF  L+ P     ++   E    ++ R  IE QL  +    V LPS G ++I+ T
Sbjct: 243 AKQITDFAALIFPRRKTFIKVHSETERTLYERFRIEAQLQKIFSRSVNLPSGGQLVIDHT 302

Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           EAL +ID+NSG+   E   ++ AL+TN+EAA+EI  QL LRD+ G IVVDFI+M++ K+ 
Sbjct: 303 EALTAIDINSGKIGGEKNFKEMALRTNIEAAQEIPNQLMLRDIGGQIVVDFIEMKDGKHI 362

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           R VEK L+++LK DRAR  +G IS FGLLE+ RQR+ +S L  + + C +C GAG  R+ 
Sbjct: 363 REVEKVLRQALKVDRARTDIGRISKFGLLEIVRQRLGTSALSGSLEPCPHCSGAGTRRNL 422

Query: 497 SSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
              ++  L+ +   L +  +       T +D++ YL+N+KR  ++E+E  FG  I V+  
Sbjct: 423 EWRSMQALKDIYRELRKDKSFEPFTYKTDADLMQYLVNRKREKLMEFEQTFGRKIFVMPT 482

Query: 556 IE 557
             
Sbjct: 483 ET 484



 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KM I     E+  V ++ D  V E   E  H+ + KGNIY A++  V+ +LQAAF++YG
Sbjct: 7  RKMFISVLPGEQVEVAIMEDGVVCEYYVEMLHQSKTKGNIYKARIHNVDQALQAAFINYG 66

Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQA 88
            ++GFL   E+HP+YYQ     R  
Sbjct: 67 AEKNGFLQVDEVHPEYYQGDVPSRGK 92


>gi|149378039|ref|ZP_01895763.1| Ribonucleases G and E [Marinobacter algicola DG893]
 gi|149357694|gb|EDM46192.1| Ribonucleases G and E [Marinobacter algicola DG893]
          Length = 493

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 236/486 (48%), Gaps = 8/486 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  +     G++       +      A      E  + I A
Sbjct: 11  PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVDIGLERAAFIHA 70

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V S     +       P+  K    I+ +++  Q L+VQ+ K+  G KGA +TT LS
Sbjct: 71  SDVVTSQQPANE------APETPKTVPDIRTLLREGQSLVVQVTKDPIGTKGARLTTQLS 124

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKI 259
           +  RY V MP         R        +  +L E     E     G I+RTA  + ++ 
Sbjct: 125 IPSRYLVFMPGVRHVGISQRIEDETERSRLKSLVEEGAAAEPDISGGYIIRTAAEAASED 184

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           ++  D  YL RL   + E    S AP +VY++  L  R IRDL      ++ +   + ++
Sbjct: 185 DLIGDMTYLHRLNQAIEERITRSQAPSVVYQDLPLFIRTIRDLIRPQTEKVRIDSRESHQ 244

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
              +F++  +  ++  V  Y    PIF    +E ++      +V L S GYVII+QTEA+
Sbjct: 245 RVMEFVEEFVTEFSDKVEYYPGERPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAM 304

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +ID+N+G       +E+T  +TNLEAA  I+RQLRLR+L G+I++DFIDME+ ++ R V
Sbjct: 305 TTIDINTGAFVGHRNLEETIFKTNLEAARAISRQLRLRNLGGIIIIDFIDMEDSEHQRQV 364

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            + L++ L++D A+ ++  +S  GL+EM+R+R   S+ +   + C  C G G++++  +V
Sbjct: 365 HRMLEKMLERDHAKTKITGVSELGLVEMTRKRTTESLGQILCEPCPICDGRGFLKTSETV 424

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              + R +      Y A + +V     VV  LL+++   + + E     +I   +    +
Sbjct: 425 CYEVFREILRVNRAYDAESYLVMASQSVVDRLLDEESDNVADLETFISKTIRFQVEPFYS 484

Query: 560 DKLFYI 565
            + + +
Sbjct: 485 QEQYDV 490



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV ++ +  ++E   E   +K I GNIY  KV RV P ++AAFVD
Sbjct: 1  MSEEILINVT-PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   ++
Sbjct: 60 IGLERAAFIHASDV 73


>gi|312889812|ref|ZP_07749358.1| ribonuclease, Rne/Rng family [Mucilaginibacter paludis DSM 18603]
 gi|311297738|gb|EFQ74861.1| ribonuclease, Rne/Rng family [Mucilaginibacter paludis DSM 18603]
          Length = 516

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 148/575 (25%), Positives = 245/575 (42%), Gaps = 61/575 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++IDA+    T + +L+D ++ EL  E                             
Sbjct: 1   MVKELIIDATPGGAT-IALLQDKQLVELHKEQISNNY----------------------- 36

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                       +I+             L K   I    + A  D     D  +      
Sbjct: 37  ---------AVGDIY-------------LGKIKKIMPGLNAAFVDVGYEKDAFLHYLDLG 74

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +V  +   S++    S  S   D     E++  G              I EV+   Q++
Sbjct: 75  PQVLSLLKLSKQVRGGSYQSKLLDNFKLEEEINKGGK------------ISEVLTKNQLI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            VQI KE    KG  +++ LS+AGRY +L+P  S+  +IS+KI +  +R  L++I   ++
Sbjct: 123 PVQIAKEPISTKGPRLSSDLSIAGRYVILVPF-SETISISKKIKSNTERTRLRKIIESIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RT    +   E+++D   L+  W++      ++     +  E +     +R
Sbjct: 182 PK-NFGVIIRTVSEGKGVTELQQDLIDLISKWESFITRLPSTEPAKKILGEIDRTSTILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL   D   I V+    + E + ++  + P    IV+ ++   PIF   GI+ Q+     
Sbjct: 241 DLLNPDFQNIYVNDSSIFEEVRTYVHQISPDLESIVKMHKHKEPIFEHYGIDKQIKGAFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEEIARQLRLRDL 419
             V L    Y++I  TEAL  IDVNSG  T     ++T A Q N EAA+EIARQLRLRD+
Sbjct: 301 KTVNLAGGAYLVIEHTEALHVIDVNSGNRTANKENQETNAFQVNKEAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G++V+DFIDM +  N + +   LKE +  DRA+  +   S FGL++++RQR+R  +   
Sbjct: 361 GGIVVIDFIDMHKPNNRKDLFDYLKEEMALDRAKHTILPPSKFGLVQITRQRVRPEMNIV 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T++VC  C G G IR    +   I  +    L +    NI +  H  +  Y+        
Sbjct: 421 TSEVCPTCNGTGTIRPTILLLDDIENNFNFILTEQNEKNITLCVHPYIEAYIKKGIYNRQ 480

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           +++  ++   I V          F+       +  
Sbjct: 481 MKWFFKYNQWIKVTSNPSYQITEFHFLSSKGEEIK 515


>gi|329295758|ref|ZP_08253094.1| ribonuclease G [Plautia stali symbiont]
          Length = 489

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGNEKKNFIVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK +        G G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKAVVAAYCDDLG-GFIIRTAAEGIGAEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    L+Y E  L +R +RD     +  I V          +F    +P  
Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRVLRDFAGAALDRIRVDSRLTCDLLVEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 ASKLELYNGKPPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM    + R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDDHRRRVLHSLESALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G +++  +V   I+R +     
Sbjct: 374 KTSINGFSALGLVEMTRKRTRESIEHVLCADCPVCQGRGSLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y + + +V+    V   L + +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDSFLVYVSPAVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYEGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGMDKAAFLHASDIMP 75


>gi|238793753|ref|ZP_04637375.1| Ribonuclease G [Yersinia intermedia ATCC 29909]
 gi|238726994|gb|EEQ18526.1| Ribonuclease G [Yersinia intermedia ATCC 29909]
          Length = 466

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 53  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 112

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 113 AAHVGVSQRIESEAERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 170

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F    +P  
Sbjct: 171 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 230

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 231 TAKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 290

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 291 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 350

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 351 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 410

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 411 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 463


>gi|53802441|ref|YP_112910.1| ribonuclease G [Methylococcus capsulatus str. Bath]
 gi|53756202|gb|AAU90493.1| ribonuclease G [Methylococcus capsulatus str. Bath]
          Length = 484

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 204/396 (51%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+ + +  Q + VQ+VK+  G KGA ++T +S+   Y V MP +       R        
Sbjct: 86  IEAIFREGQEIAVQVVKDPIGTKGARLSTEISVPSVYEVYMPFSKTSGVSQRIECEAERA 145

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +    +          G I RT+     +  ++ D  +L++LW+++ +    +    L++
Sbjct: 146 RLRACVEAFQREHGTGGFIARTSAEGVDESLLRADMLFLLKLWNSIAQRIKTAKVKVLLH 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           E+  L  R +RDL    + +I V   + +     F +  +P  A ++  Y    P+F   
Sbjct: 206 EDLPLSMRVLRDLRRTRVDKIRVDSRETHARLTKFAREFVPEIAPMIEHYAGERPLFDLY 265

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           G+E ++    +  VTL S GY+I +QTEA+ ++DVN+G       +E+T  +TNLEAA+ 
Sbjct: 266 GVEEEIQKALERRVTLKSGGYLIFDQTEAMTTVDVNTGAFVGGRNLEETIFKTNLEAAQA 325

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM ++ +   V   L   L++D A+  +  +S  GL+EM+R
Sbjct: 326 IARQLRLRNLGGIIIIDFIDMRDEDHKAQVLHALSRHLERDPAKNTISEVSPLGLVEMTR 385

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+ +   + C  C G G +++  +  L I R +   + QY    ++V   ++VV 
Sbjct: 386 KRTRESLEQVLCEPCPACGGRGVLKTAETTCLDIFREIIREVRQYQVQELLVLASNEVVE 445

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            LL+++  T+ E E+  GV I      +   + + +
Sbjct: 446 RLLDEEADTLSELESFIGVPIKFRAESQYNQEQYDV 481


>gi|134300375|ref|YP_001113871.1| ribonuclease [Desulfotomaculum reducens MI-1]
 gi|134053075|gb|ABO51046.1| RNAse G [Desulfotomaculum reducens MI-1]
          Length = 559

 Score =  251 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 132/452 (29%), Positives = 230/452 (50%), Gaps = 3/452 (0%)

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
             +    VED +     +   +      I +++K  Q ++VQIVKE  G KG  VTT+++
Sbjct: 63  EKNAFLYVEDAQPSRNPEAANQSGYPVNIADILKQGQEIIVQIVKEPIGTKGPRVTTHIT 122

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP         R  T     +   +       P GMGVI+RT      + E 
Sbjct: 123 LPGRYLVLMPTVDYIGISRRIETEKERER--LKELANRVKPEGMGVIVRTVAEGVDEEEF 180

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +D   L +LW  ++  A N  AP+L++ +  L++R +RD++ +D+  + V     Y + 
Sbjct: 181 LQDIILLTKLWRRIQNCAANCSAPNLLHRDVELVQRMLRDVFSEDVDRLTVDSRSEYEKT 240

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            + + ++     ++    ++   IF   GI  +++   + +V L    Y++I+Q EAL +
Sbjct: 241 LEILDMIDSRL-KLKVFLDERENIFEDYGISTEMEKALKRKVWLKCGAYLVIDQAEALTA 299

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G+      +EDT L+TNL+AA EIARQLRLR++ G+I+VDFIDM E+++   V  
Sbjct: 300 IDVNTGKFVGSTTLEDTVLKTNLDAAVEIARQLRLRNIGGIIIVDFIDMVEEEHRSQVLS 359

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E +KKD+ +  +  I+  GL+EM+R+++R S+ E   K C YC+G G + S+ +V +
Sbjct: 360 TLEEEIKKDKTKTNILGITQLGLVEMTRKKVRPSLAEVVQKSCPYCEGRGKVLSEETVGI 419

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +   + +   Q  A  I+V  +  V   ++    A + E E + G ++ +        +
Sbjct: 420 KLKNQIYQLARQTLADTILVEANPVVAARIIGAGGANLRELEQKTGKNLYIRGSATHHLE 479

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
              I+  S  + + +    V +        + 
Sbjct: 480 QVTIKPLSDQEEIYSQTVPVKAGEIIEVKVEE 511



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I+    EETRV VL D  + E+  E  H +++ GNI+  KV  V P +QAAFVD
Sbjct: 1  MLKEIVINV-QEEETRVAVLEDRVLMEVYIERSHNQRLVGNIFKGKVENVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  ++ FL   +  P
Sbjct: 60 IGLEKNAFLYVEDAQP 75


>gi|145634339|ref|ZP_01790049.1| ribonuclease G [Haemophilus influenzae PittAA]
 gi|148825893|ref|YP_001290646.1| ribonuclease G [Haemophilus influenzae PittEE]
 gi|229844189|ref|ZP_04464330.1| ribonuclease G [Haemophilus influenzae 6P18H1]
 gi|145268319|gb|EDK08313.1| ribonuclease G [Haemophilus influenzae PittAA]
 gi|148716053|gb|ABQ98263.1| ribonuclease G [Haemophilus influenzae PittEE]
 gi|229813183|gb|EEP48871.1| ribonuclease G [Haemophilus influenzae 6P18H1]
          Length = 491

 Score =  251 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VK+  G KGA +TT ++L  R+ V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRHLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|303246708|ref|ZP_07332986.1| ribonuclease, Rne/Rng family [Desulfovibrio fructosovorans JJ]
 gi|302492048|gb|EFL51926.1| ribonuclease, Rne/Rng family [Desulfovibrio fructosovorans JJ]
          Length = 486

 Score =  251 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 163/418 (38%), Positives = 243/418 (58%), Gaps = 3/418 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +  +    +        ++  +   IQ+ +K  Q LLVQ+VKE  G+KGA +TT
Sbjct: 69  AERNGFLQIDEVHPEYYQIVHAGERRPKYPPIQKALKKNQELLVQVVKEPTGHKGAFLTT 128

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSL GRY VL P   +   +SRKI +  +RK LKE   GL++  G+G+I+RTA  S++K
Sbjct: 129 YLSLPGRYFVLTPGREQRG-VSRKIEDEAERKRLKEAISGLKLEEGLGIIVRTAALSQSK 187

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             ++RD  YL RLW  VR+    +  P L+Y+E +L  RA+RD    ++ EI V   +  
Sbjct: 188 TALERDLSYLKRLWKEVRQRGTTAETPSLIYQELDLSSRAVRDYLTDEVGEIWVDEPETA 247

Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
               +   L+ P    IV+Q+ +   P++ R  +  Q++ L+  EVTLPS G +  +  E
Sbjct: 248 GRVAEMSSLIYPRRPSIVKQHTDMDVPLWDRFNLRKQIEQLYGREVTLPSGGVLAFDHAE 307

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL ++D+NSG+   E    + AL+TN+EAAEE+ARQLRLRD+ G +V+DFI+M+++K+  
Sbjct: 308 ALTAVDINSGKIGGESNFREMALKTNVEAAEEVARQLRLRDIGGQVVIDFIEMKDRKHVA 367

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK L+ + K DRAR  VG IS FGLLE+ RQR+ SS L  T++ C  CKG+G  R+  
Sbjct: 368 EVEKTLRAAFKSDRARTDVGRISRFGLLEIVRQRLGSSALSITSETCPCCKGSGQRRNHE 427

Query: 498 SVALSILRSVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             AL++L+ +   L + +    +      ++ LYLLN KRA +   E  F   I V  
Sbjct: 428 WQALTVLKDIYRQLRKDSGQETVTAKVSEELALYLLNYKRARLSAMEEEFKKKIVVTA 485



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          KM I     E+  V V  D  + E   E  H+ + +G+IY  ++  ++P+LQAAF++YG 
Sbjct: 10 KMFISVLPGEQVEVAVAEDGLLLEYYVEMVHQAKTRGHIYKGRIHNIDPALQAAFINYGA 69

Query: 64 NRHGFLPFLEIHPDYYQIPFS 84
           R+GFL   E+HP+YYQI  +
Sbjct: 70 ERNGFLQIDEVHPEYYQIVHA 90


>gi|262164137|ref|ZP_06031876.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           mimicus VM223]
 gi|262027665|gb|EEY46331.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio
           mimicus VM223]
          Length = 385

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 195/383 (50%), Gaps = 2/383 (0%)

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           Q+VK+  G KGA +TT ++L  RY V MP  S    +S++I +  +R+ LK +       
Sbjct: 2   QVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESEEERERLKAVVNHYCDE 60

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
            G G I+RTA     + E+ +D  +L RLW  V E         ++Y E  L +R +RD 
Sbjct: 61  HG-GFIIRTAAEGANEKELAQDAAFLKRLWSKVIERRGKYKNRSMLYGELGLAQRILRDF 119

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
              ++++I++   + +   K+F    +P     +  Y    PIF     E ++    + +
Sbjct: 120 VGTELTKILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERK 179

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           V L S GY+II+QTEA+ +ID+N+G       +E+T   TN+EA + IARQLRLR+L G+
Sbjct: 180 VELKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGI 239

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           I++DFIDM   ++ + V   L+ +L KDR +  +   +  GL+EM+R+R R S+      
Sbjct: 240 IIIDFIDMASDEHRKRVLTSLEAALVKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCS 299

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
            C  C+G G +++  SV   ILR +      Y A   +V+    V   L  ++   + E 
Sbjct: 300 TCPTCEGRGSVKTVESVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAEL 359

Query: 543 EARFGVSINVVIGIELADKLFYI 565
           E   G  + +        + F +
Sbjct: 360 EVFIGKEVRIQAEPLYNQEQFDV 382


>gi|212702391|ref|ZP_03310519.1| hypothetical protein DESPIG_00407 [Desulfovibrio piger ATCC 29098]
 gi|212674190|gb|EEB34673.1| hypothetical protein DESPIG_00407 [Desulfovibrio piger ATCC 29098]
          Length = 721

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 165/400 (41%), Positives = 245/400 (61%), Gaps = 2/400 (0%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
              P K K+   IQ+V+K  Q +LVQ+VKE  GNKGA +TT+LSLAGR+ VL P   +  
Sbjct: 323 HHEPSKGKKFPPIQKVLKPGQEVLVQVVKEPTGNKGAFLTTWLSLAGRFLVLTPGQEQIG 382

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
            +SRK+ +  +R  L+E+  G++   G+GVI+RT  A  TK  +K D +YL R+W ++R+
Sbjct: 383 -VSRKVDSDEERTRLREMMNGIDPGQGLGVIVRTVSAGTTKTTLKNDLQYLKRVWKDIRK 441

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
            A    AP L+Y+E  L +RA+RD    D+ EI V  E+     ++ + LL P    +VR
Sbjct: 442 KATEVSAPALIYQEPGLPQRAVRDYLTDDVCEIWVDNEEVADSIRETVSLLFPRKKELVR 501

Query: 338 QY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
            + +   P++ R  +  QLD ++  EVTLPS G ++ +QTEAL+++D+NSG+ + +   E
Sbjct: 502 LHTDVRMPLWERFSLRRQLDQIYSREVTLPSGGRLVFDQTEALMAVDINSGKISGKVNFE 561

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
             A +TN+EAAE IARQL+LRD+ G +V+DFI+M +KK+   VEK L+ ++K DRAR  V
Sbjct: 562 SMAHRTNMEAAEAIARQLKLRDIGGQVVIDFIEMRDKKHVLEVEKTLRTAMKNDRARHDV 621

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
           G +S+FGLLE+ RQR  SS L  T + C +C G G  R+    AL  LR +   L  +  
Sbjct: 622 GRMSSFGLLELVRQRTGSSALSITMEPCPFCGGTGQRRNLEWQALQALREMRRALRTHGG 681

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
              +  T  ++ LYLLN KR ++ + E  FG  + + I  
Sbjct: 682 DKYVFETTRELGLYLLNHKRDSLRDMEQDFGKCLEISIRP 721



 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +M I     E+  V +  + R++E   +  H++++KGNIY   +  ++ +LQAAFV YG
Sbjct: 244 RRMFISVLPGEQVEVAIAEEGRLQEYYLDMFHQRKLKGNIYKGVIHNIDTNLQAAFVSYG 303

Query: 63  GNRHGFLPFLEIHPDY 78
             ++GFL   EIHP+Y
Sbjct: 304 AGKNGFLQIDEIHPEY 319


>gi|37527914|ref|NP_931259.1| ribonuclease G [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787350|emb|CAE16439.1| ribonuclease G (RNase G) (cytoplasmic axial filament protein)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 489

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 199/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGEEQKNFHVKDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK I        G G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEEERNR-LKNIVADYCDEHG-GFIIRTAAEGVGDEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +V  + +Y E  L  R +RD     +  I V     + + ++F++  +P  
Sbjct: 194 SKVMERKKRNVTKNKLYGELALAHRILRDFAGAALDRIRVDSRLTFTQLQEFIREYIPKM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TARLELYNGNQPIFDLFDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L++ L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNSEEHRRRVLASLEQVLSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  CKG G ++S  +V   I+R +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHILCGDCPTCKGRGTVKSVETVCYEIMREIVRVHR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +++    V   L  ++   + E E   G  + V      + + F +
Sbjct: 434 AVDADRFLIYASPAVSEALKGEESHALAEVEIFVGKQVKVQTEQLYSQEQFDV 486


>gi|296136987|ref|YP_003644229.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
 gi|295797109|gb|ADG31899.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
          Length = 501

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 119/401 (29%), Positives = 207/401 (51%), Gaps = 4/401 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+++I   Q L+VQ++K+    KGA +TT +SLAGR  V +P  +    IS+KI    
Sbjct: 99  QPIEKLIYEGQTLMVQVLKDPINTKGARLTTQISLAGRMLVHLPQDNHIG-ISQKIDGAE 157

Query: 228 DRKNLKEIARGL---EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
            R  L+E    L   +     G I+RT     +  E+  D  YL + W  +++ A  +  
Sbjct: 158 LRTALRERMSALLAADAGDSQGFIVRTNAEDASDAELAEDIAYLRKTWAAIQQRAHVTSP 217

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
             L+Y+E +L +R +RDL       + +   + +   + F    MP  +  ++ Y    P
Sbjct: 218 SALIYQELSLAQRVLRDLVSDATRSVQIDSRENFELLQGFAAEYMPRVSSRLQLYRGERP 277

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F  + ++ +++      V L S GY+II+QTEA+ +IDVN+G        +DT  +TNL
Sbjct: 278 LFETANVDEEIERALGRRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGARNFDDTIYRTNL 337

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EA + IARQLRLR+L G+I++DFIDM   ++  +V  +L++SL +D+ +V V   S  GL
Sbjct: 338 EATQAIARQLRLRNLGGIIIIDFIDMHNAQHRAAVLDELRKSLARDKVKVTVSGFSQLGL 397

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +E++R+R R S+     + C  C G G +++  +V   ILR +     Q+      +   
Sbjct: 398 VELTRKRTRDSLAHMLLEPCPTCGGLGQVKTARTVCYEILREILREAKQFNPREFRIVGA 457

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +DV+   L ++   +       G  +++ +    + + + I
Sbjct: 458 ADVIDLFLEEESQHLASLSDFIGKPVSLQVEPAFSQQQYDI 498



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +LI+ +  +ETRV ++    V+EL  E   ++ + GNIYL KV RV P +Q+AF+D G  
Sbjct: 8  ILINIT-PQETRVALVAHAAVQELHIERSLERGLVGNIYLGKVARVLPGMQSAFIDIGLE 66

Query: 65 RHGFLPFLEI 74
          R  FL   ++
Sbjct: 67 RTAFLHVADL 76


>gi|294341160|emb|CAZ89561.1| Ribonuclease G (RNase G) (Cytoplasmic axial filament protein)
           [Thiomonas sp. 3As]
          Length = 501

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 114/400 (28%), Positives = 203/400 (50%), Gaps = 2/400 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+++I   Q L+VQ++K+    KGA +TT +SLAGR  V +P  +      +     +
Sbjct: 99  QPIEKLIYEGQTLMVQVLKDPINTKGARLTTQISLAGRMLVHLPQDNHIGISQKIDGAEL 158

Query: 228 DRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
                + +   L   AG   G I+RT     +  E+  D  YL + W  +++ A  +   
Sbjct: 159 RTALRERMTALLATDAGDAQGFIVRTNAEDASDAELAEDIAYLRKTWAAIQQRAHVTSPS 218

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y+E +L +R +RDL       + +   + +   + F    MP  +  ++ Y    P+
Sbjct: 219 ALIYQELSLAQRVLRDLVSDATRSVQIDSRENFELLQSFAAEYMPRVSGRLQLYRGERPL 278

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F  + ++ +++      V L S GY+II+QTEA+ +IDVN+G        +DT  +TNLE
Sbjct: 279 FETANVDEEIERALGRRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGARNFDDTIYRTNLE 338

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           A + IARQLRLR+L G+I++DFIDM   ++  +V  +L++SL +D+ +V V   S  GL+
Sbjct: 339 ATQAIARQLRLRNLGGIIIIDFIDMHNAQHRAAVLDELRKSLARDKVKVTVSGFSQLGLV 398

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E++R+R R S+     + C  C G G +++  +V   ILR +     Q+      +   +
Sbjct: 399 ELTRKRTRDSLAHMLLEPCPTCGGLGQVKTARTVCYEILREILREAKQFNPREFRIVGAA 458

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           DV+   L ++   +       G  +++ +    + + + I
Sbjct: 459 DVIDLFLEEESQHLASLSDFIGKPVSLQVEPAFSQQQYDI 498



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +LI+ +  +ETRV ++    V+EL  E   ++ + GNIYL KV RV P +Q+AF+D G  
Sbjct: 8  ILINIT-PQETRVALVAHAAVQELHIERSLERGLVGNIYLGKVARVLPGMQSAFIDIGLE 66

Query: 65 RHGFLPFLEI 74
          R  FL   ++
Sbjct: 67 RTAFLHVADL 76


>gi|119477376|ref|ZP_01617567.1| Ribonucleases G and E [marine gamma proteobacterium HTCC2143]
 gi|119449302|gb|EAW30541.1| Ribonucleases G and E [marine gamma proteobacterium HTCC2143]
          Length = 492

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 209/423 (49%), Gaps = 7/423 (1%)

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
           +  D+     E V ++      I+ ++   Q L+VQ+VK+  G KGA +TT LS+  RY 
Sbjct: 69  HASDISVIDKEGVEQRNAEVADIRSLVWEGQSLIVQVVKDPIGTKGARLTTQLSVPSRYL 128

Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM-----GVILRTAGASRTKIEIK 262
           V MP T       R   +    +   +        A       G ILRTA     + E+ 
Sbjct: 129 VFMPQTQHIGISQRI--DDEIERARLKELVERCSAADPSYSKSGFILRTAAEGVGEDELM 186

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
            D +Y  RLW  +        AP ++YE+  L  R +RDL   D+ +I +  ++ +    
Sbjct: 187 ADIKYFQRLWSALERKMKERPAPSVIYEDLPLYMRTMRDLVRPDMEKIRIDSKESFHNVL 246

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            F +  +P     +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +I
Sbjct: 247 QFAEDYIPELKNRIEYYPGERPIFDLYAVEDEIQKALGRKVPLKSGGYLIIDQTEAMTTI 306

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVN+G       +E+T  +TNLEAA  +ARQL++R+L G+I++DFIDM++ ++ R V + 
Sbjct: 307 DVNTGGFVGHRNLEETIFKTNLEAATSLARQLKVRNLGGIIIIDFIDMQDIEHRRQVHRT 366

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           L+++++ D  +  +  +S  GL+EM+R+R R S+     + C  C+  G I++  ++   
Sbjct: 367 LEKAMEHDYTKTVISGVSELGLVEMTRKRTRESLEHIMCEECPVCEARGSIKTSETICYE 426

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
           I R +      Y    ++V     VV  LL+++ A++ + E   G SI   +        
Sbjct: 427 IFREILREARAYDNDKLMVLASQSVVDRLLDEESASVADLEEFVGKSIQFQVESVYNQGQ 486

Query: 563 FYI 565
           F +
Sbjct: 487 FDV 489


>gi|317049779|ref|YP_004117427.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b]
 gi|316951396|gb|ADU70871.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b]
          Length = 489

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFSVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK +        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERER-LKAVVAAYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    L+Y E  L +R +RD     +  I V          +F    +P  
Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRVLRDFAGAALDRIRVDSRLTCDLLVEFTGEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 ASKLELYSGKQPIFDLYDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM    + R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNDDHRRRVLHSLESALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGINGFSALGLVEMTRKRTRESIEHVLCADCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPAVGEALKSDESHALAEVEIFVGKQVKVHVEPLYNQEQFDV 486



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  +  FL   +I P
Sbjct: 60 IGLEKAAFLHASDIMP 75


>gi|238758353|ref|ZP_04619531.1| Ribonuclease G [Yersinia aldovae ATCC 35236]
 gi|238703476|gb|EEP96015.1| Ribonuclease G [Yersinia aldovae ATCC 35236]
          Length = 466

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY VLMP 
Sbjct: 53  HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 112

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK+         G G I+RTA     + E+  D  +L RLW
Sbjct: 113 AAHVGVSQRIESEAERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 170

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V+E    ++  + +Y E  L +R +RD     + +I V  +  Y    +F    +P  
Sbjct: 171 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 230

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 231 TAKLELYTGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 290

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 291 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 350

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 351 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 410

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 411 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKLVKVQIEPLYNQEQFDV 463


>gi|68250132|ref|YP_249244.1| ribonuclease G [Haemophilus influenzae 86-028NP]
 gi|260580814|ref|ZP_05848640.1| ribonuclease G [Haemophilus influenzae RdAW]
 gi|68058331|gb|AAX88584.1| ribonuclease G [Haemophilus influenzae 86-028NP]
 gi|260092631|gb|EEW76568.1| ribonuclease G [Haemophilus influenzae RdAW]
          Length = 491

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VKE  G KGA +TT ++L  R+ V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRHLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|294792146|ref|ZP_06757294.1| ribonuclease G [Veillonella sp. 6_1_27]
 gi|294794011|ref|ZP_06759148.1| ribonuclease G [Veillonella sp. 3_1_44]
 gi|294455581|gb|EFG23953.1| ribonuclease G [Veillonella sp. 3_1_44]
 gi|294457376|gb|EFG25738.1| ribonuclease G [Veillonella sp. 6_1_27]
          Length = 475

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 145/457 (31%), Positives = 232/457 (50%), Gaps = 7/457 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D        + E    ++ +    + ++ +  N + +   D+ G     +  +  ++  I
Sbjct: 19  DEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              +   Q +LVQ+VKEE   KGA VT  +SLAGRY VL+P  S+G  IS+KIT+    +
Sbjct: 79  LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRYMVLLP-YSEGMHISKKITD-ETMR 136

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
           +  +      V  G G I+RTA A  +  EI RD EYL R W +V +    + +   +Y 
Sbjct: 137 SKLQELATPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           + +   R +RD   +++ EIIV  + G     D +     S    V ++ D  PIF  + 
Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409
           IE QL+ L   ++ LPS G + I+ TEAL   DVNS   T +    +  A   N EAA+E
Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLRD+ G+IVVDFIDM++K++ + + K L    K D+ +  V  IS+ GL+EM+R
Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLGVQAKLDKMKTVVCGISSLGLVEMTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528
           +R R  +       C  C G GY+ S  +V + I+R + E         N+ +  H +V 
Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKTNLEIEVHPEVA 436

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            YL    +A + +     G  I++V+  +++ + + +
Sbjct: 437 QYLT---KAVLEDLGESIGRKISIVVNPQISREGYSL 470



 Score = 84.3 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 4  KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          K+L++    EE R+ V+  + ++ +   E   +  +  ++Y   V  V   +QAAFVD G
Sbjct: 3  KILVNVMR-EEIRMAVIDEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61

Query: 63 GNRHGFL 69
          G+++ +L
Sbjct: 62 GSQNAYL 68


>gi|77166115|ref|YP_344640.1| ribonuclease E and G [Nitrosococcus oceani ATCC 19707]
 gi|254435914|ref|ZP_05049421.1| ribonuclease, Rne/Rng family [Nitrosococcus oceani AFC27]
 gi|76884429|gb|ABA59110.1| RNAse G [Nitrosococcus oceani ATCC 19707]
 gi|207089025|gb|EDZ66297.1| ribonuclease, Rne/Rng family [Nitrosococcus oceani AFC27]
          Length = 490

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 125/398 (31%), Positives = 215/398 (54%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I  ++   Q +LVQ++K+  G KGA +TT +S+A RY V MP  S      +      
Sbjct: 90  PSITSLLSEGQEVLVQVIKDPIGTKGARLTTQISIASRYLVYMPEMSGTGVSLKIEDAEE 149

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            ++    +A  L      G I+RT      + ++  D E+L +LW  ++E +    A  +
Sbjct: 150 RQRLKSLLASVLLEDNCGGYIIRTVAEGAVEEDLCTDMEFLHKLWRTIKERSQTVKAGSV 209

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           V+++ +L+ R +RD   + +  + V   + Y +  DF +  +P     +  Y+   PIF 
Sbjct: 210 VHKDLSLVMRTMRDFVHERVERVRVDSRETYHKLVDFAERFIPDLLTTLECYQGERPIFD 269

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             GIE ++      +V L S GY+II+QTEA+ +IDVN+G       +E+T  +TNLEAA
Sbjct: 270 LYGIEDEIQKSLGRKVQLKSGGYLIIDQTEAMATIDVNTGAFVGHRNLEETIFKTNLEAA 329

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           + I RQLRLR+L G+I++DFIDMEE+++ R V + L++ L+KD A+  +  +S+ GL+EM
Sbjct: 330 QAICRQLRLRNLGGIIIIDFIDMEEEEHKRQVLRALEKGLEKDHAKTHISEVSSLGLVEM 389

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+ +   + C  C G   +++  +V   ILR +     Q+ A   +V    +V
Sbjct: 390 TRKRTRESLEQILCEPCPACSGRATVKTVETVCYEILREILREARQFEASQYLVIAAQEV 449

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  L++++ A++ E E+  G  +     +    + F +
Sbjct: 450 VDRLMDEESASVAELESFIGKPLKFQTELLYMREQFDV 487



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV V+ +  V+EL  E   ++   GNIY  +V R+ P +QAAFV+
Sbjct: 1  MSEEILINVT-PSETRVAVVENGVVQELYIERSSRRGWVGNIYKGQVNRILPGMQAAFVN 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHASDI 73


>gi|153003610|ref|YP_001377935.1| ribonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152027183|gb|ABS24951.1| ribonuclease, Rne/Rng family [Anaeromyxobacter sp. Fw109-5]
          Length = 740

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 137/508 (26%), Positives = 238/508 (46%), Gaps = 5/508 (0%)

Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167
              D          +        ++ EE       +       +    +  +  K+ K  
Sbjct: 238 EKADAREARADREPKEGKGGERRRDREERGRRDGRDREAREGRERGNRNGHEREKRSKEP 297

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             IQ+++K  Q ++VQ+ K+  G KGA +T+++SL GR+ V MP         R   +  
Sbjct: 298 KNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGISRRIEKDSE 357

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            R+           P G G I+RT   +    +++ D  +L+++W+ +        AP L
Sbjct: 358 RRR--LREIVDRMRPDGTGFIVRTVAENVEAGKLEADIRFLIQVWNEIIRTKDKVSAPAL 415

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           ++ + +LI RA RDL+  D+ ++++     Y     F+    P     +  Y    PIF 
Sbjct: 416 LHGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHEQAPHLESQIEYYRGEEPIFD 475

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             GIE +L    Q +V L S GY+I++Q EAL +IDVNSGR   +  +E+T  + N+EAA
Sbjct: 476 AYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITKINVEAA 535

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           +EI  QLRLR++ G+I++DFIDM++ +N   V K L+++L +D+A+  V  IS  GL+EM
Sbjct: 536 KEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISELGLVEM 595

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R+R SV     + C+YC+G G+++S+ ++   I R +    + +    ++V+ H +V
Sbjct: 596 TRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRREAVHFPEPVLVVNCHPEV 655

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
              L   +R  +     RF  +I V        + F I      Q  ++       +   
Sbjct: 656 ARILQGSEREELRYLMDRFNKTIQVKPQSGYHQEQFDI---YGRQERIDQPRDRERERGR 712

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDI 615
                       +E   P   +   E+ 
Sbjct: 713 GRDRDRGGRGKSEEPATPPADAAGGEER 740



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 4/143 (2%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ++I+A+   ETRV ++ +N + E   E + +K I GNIY  +V RV P +QAAFVD G +
Sbjct: 7   LVINAAGA-ETRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLD 65

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           +  FL   ++   Y    FS+   L +  +  +        +    +       S     
Sbjct: 66  KAAFLYVGDV---YGDPEFSEEFELTEGEHRVEVPEVPTEQEAEAEEARAQAVSSQPPAV 122

Query: 125 PIANFSQETEEESIISANNDVVS 147
             A    E    +   +      
Sbjct: 123 AAAPLEGEAVTPAPTPSPVPEGE 145


>gi|16273263|ref|NP_439504.1| ribonuclease G [Haemophilus influenzae Rd KW20]
 gi|1168735|sp|P45175|RNG_HAEIN RecName: Full=Ribonuclease G; Short=RNase G; AltName:
           Full=Cytoplasmic axial filament protein
 gi|1574815|gb|AAC23000.1| cytoplasmic axial filament protein (cafA) [Haemophilus influenzae
           Rd KW20]
          Length = 491

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 120/414 (28%), Positives = 205/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VKE  G KGA +TT ++L  R+ V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRHLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA +L+LR+L G+I++DFIDM+  ++   V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAHELQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|120437892|ref|YP_863578.1| ribonuclease G [Gramella forsetii KT0803]
 gi|117580042|emb|CAL68511.1| ribonuclease G [Gramella forsetii KT0803]
          Length = 531

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 230/561 (40%), Gaps = 63/561 (11%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           K LI  S        +L+D ++ EL+ E +  K   G+IY+AK+ +  P L AAFV+ G 
Sbjct: 22  KELIIRSEPSAVDFALLKDGKLIELNKEEDSTKFNVGDIYIAKIRKAVPGLNAAFVNVGY 81

Query: 64  NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
            + GFL + ++ P       S     LK  +  +    ++ +     D+      +    
Sbjct: 82  EKDGFLHYHDLGPQ-----VSSLLKFLKRVSTGKLKDYSLKNFSFEKDIDKNGSIADVLK 136

Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
           +  +   Q  +E                               +Y +     NR  +  +
Sbjct: 137 SNQSLLVQIVKEPISTKGPRISSE--------------LSLPGRYIVLVPFSNRISVSQK 182

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           I  ++   +   +   +   G   ++                                  
Sbjct: 183 IESKDEKERLKRLVKSIKPKGFGVIV---------------------------------- 208

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
                 RT    +   E+ RD + L+  W  + +       P  V  E N     +RD++
Sbjct: 209 ------RTVAEGKKVAELDRDLQNLVGRWTAMCKKLYKPHHPSKVLGELNRASSLLRDIF 262

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
               + I+V  E  Y + KD++  + P    IV+ ++   PIF +SGIE Q+ +     V
Sbjct: 263 NDSFTSIVVDDETLYTQIKDYVSEIAPEKESIVKLHQSNQPIFEKSGIERQIKTSFGRTV 322

Query: 364 TLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
           ++    Y++I  TEA+  +DVNSG RS +    EDTAL+ N+ +A EIARQLRLRD+ G+
Sbjct: 323 SMSKGAYLVIEHTEAMHVVDVNSGNRSNKSKNQEDTALEVNMISATEIARQLRLRDMGGI 382

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM + +N + +   L+  +  DRA+ ++   S FGL++++RQR+R  +   T +
Sbjct: 383 IVVDFIDMNKAENRKKLYDHLRNEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIKTRE 442

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
                 G G I +  S+   I +   E L++     I +  H  +  +L     +   ++
Sbjct: 443 DNP--NGNGEIEAPISLVNKI-KVDLEKLIKKEHKKITLSAHPFIAAFLTKGFPSPRSKW 499

Query: 543 EARFGVSINVVIGIELADKLF 563
                  + ++         +
Sbjct: 500 FVDHKRWVKILPRDAYTYLEY 520


>gi|298530636|ref|ZP_07018038.1| ribonuclease, Rne/Rng family [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510010|gb|EFI33914.1| ribonuclease, Rne/Rng family [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 488

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 159/404 (39%), Positives = 236/404 (58%), Gaps = 3/404 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +    E  P K  +   +Q+V+K  Q LLVQ+VKE  GNKGA +TTYLSL GRY VL P 
Sbjct: 83  EYYQAEVKPGKGHKYPPLQKVLKPGQELLVQVVKEPTGNKGAFLTTYLSLPGRYFVLTPG 142

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             +   ISRKI +  +R+ LK I + L++  G+GVI+RT    + K  + RD ++L RLW
Sbjct: 143 REQLG-ISRKIEDEKERERLKGIVQELKLDEGLGVIVRTVSEGQNKTSLSRDLQFLKRLW 201

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             VR+  +    P L+YEE +L  RA RD   +D+SEI V  E+  ++ ++F+ L+ P  
Sbjct: 202 KEVRKKGVAEKTPALIYEEKDLAFRAARDYLTEDVSEIWVDNEEVAQQVQEFVNLIFPRR 261

Query: 333 ARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            ++VR   +    +  R  +E Q+  +   EV LPS G ++ +QTEAL+++D+NSG+   
Sbjct: 262 KKMVRIHSDPEKTLMERFNLEKQISQIFSREVELPSGGRLVFDQTEALMAVDINSGKIGG 321

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           E    + A +TNLEAAE I RQL LRD+ G IV+DFI+M +KK+   VEK L+ +LK D+
Sbjct: 322 EKDFREMAFKTNLEAAENIPRQLMLRDVGGQIVIDFIEMRDKKHISQVEKALRAALKSDK 381

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
           AR  V  IS FGL+++ RQR+  S L    + C +C+G G IR+    AL   + +   L
Sbjct: 382 ARTDVSRISRFGLIQLVRQRLGISALSVIMESCRHCQGTGTIRNLEWQALQAQKEIYRLL 441

Query: 512 LQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
            + +    +      D+ +YLLN KR  +V  E +F   + +  
Sbjct: 442 RRKSCPSPLEFPVDQDLAVYLLNHKRDKLVHMEQQFDNQVLITP 485



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 1  MAN------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54
          M+N      KM +     E+  +V+  D  ++E   E   + + KGNIY  K+  ++ +L
Sbjct: 1  MSNAQKRKRKMFLSVLPGEQIELVLALDGVIQEYYVEMLGQIKTKGNIYKGKIHNIDQAL 60

Query: 55 QAAFVDYGGNRHGFLPFLEIHPDYYQ 80
          QAAF++YG  ++GFL   E+HP+YYQ
Sbjct: 61 QAAFINYGTGKNGFLQVDEVHPEYYQ 86


>gi|197287438|ref|YP_002153310.1| ribonuclease G [Proteus mirabilis HI4320]
 gi|227358300|ref|ZP_03842641.1| ribonuclease G [Proteus mirabilis ATCC 29906]
 gi|194684925|emb|CAR47101.1| ribonuclease G [Proteus mirabilis HI4320]
 gi|227161636|gb|EEI46673.1| ribonuclease G [Proteus mirabilis ATCC 29906]
          Length = 489

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I +++   Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGEEQKKFNVRDIAQLVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  +            G I+RTA     + EIK+D  +L RLW
Sbjct: 136 ASHVGVSQRIESEEERERLKR--LVEEYCDENGGFIIRTAAEGVGEHEIKQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           + + E    +     +Y E  L +R +RD    ++  I V  +  Y + ++F+   +P  
Sbjct: 194 NKIIERKKRNKTRIQIYGELALAQRILRDFAGAELDSIRVDSKLTYHQLQEFIGEYIPEL 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  ++   PIF   G+E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TAKLELHQGNQPIFDLYGVESEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA++ IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLEETIFNTNVEASQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLASLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHK 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +V+    VV  L   +   + E E   G  + V   +  + + F +
Sbjct: 434 TIDADRFLVYAAPAVVEALKGDESHALAEVEIFVGKQVKVQTELLYSQEQFDV 486


>gi|119773611|ref|YP_926351.1| ribonuclease G [Shewanella amazonensis SB2B]
 gi|119766111|gb|ABL98681.1| RNAse G [Shewanella amazonensis SB2B]
          Length = 502

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 125/396 (31%), Positives = 194/396 (48%), Gaps = 3/396 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP ++      R  +     
Sbjct: 107 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIESEDERT 166

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +   + A    V    G I+RTA       E+ +D  +L R+W  V E         L+Y
Sbjct: 167 R--LKEATLPFVDEDGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERR-KRKGSSLLY 223

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++  L  R +RD    D+  I V     + E K F +  MP +   +  Y    PIF   
Sbjct: 224 QDLALPVRIVRDFVGTDLDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLY 283

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E ++      +V L S GY+II+QTEA+ ++D+N+G       +E+T   TNLEA + 
Sbjct: 284 DVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 343

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM  + + + V   L  +L  DR +  V   S  GL+EM+R
Sbjct: 344 IARQLRLRNLGGIIIIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVEMTR 403

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+       C  CKG+GY+++  +V   I R +      Y A   +V+    V  
Sbjct: 404 KRTRESLEHVLCGECPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHA 463

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            L   +   + E E   G  I V +    A   + +
Sbjct: 464 CLSGDEHHHVAELEVYIGKRIRVQMEPLYAQNKYDV 499


>gi|303327554|ref|ZP_07357995.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. 3_1_syn3]
 gi|302862494|gb|EFL85427.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. 3_1_syn3]
          Length = 854

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 163/396 (41%), Positives = 240/396 (60%), Gaps = 2/396 (0%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
              P K K+   IQ+V+K  Q +LVQ+VKE  GNKGA +TT+LSLAGR+ VL P   +  
Sbjct: 456 HHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGNKGAFLTTWLSLAGRFLVLTPGQEQIG 515

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
            +SRK+ N  +R  L+E+  G++   G+GVI+RT  A  TK  +K D +YL RLW ++R+
Sbjct: 516 -VSRKVENDEERARLREMMNGIDPGQGLGVIVRTVSAGTTKTTLKNDLQYLKRLWRDIRK 574

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
            A    AP L+++E  L +RA+RD    D+ EI V  E+  +  +D + LL P    +VR
Sbjct: 575 KATEISAPALIHQEPGLSERAVRDYLTDDVCEIWVDNEEVAQGIRDTVSLLFPRKKDLVR 634

Query: 338 QY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
            + +    ++ R  +  QLD ++  EV LPS G ++ +QTEAL+++D+NSG+ + +   E
Sbjct: 635 LHGDIRQSMWERFNLRRQLDQIYSREVLLPSGGRLVFDQTEALMAVDINSGKISGKGNFE 694

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
             A +TN+EAAE IARQL+LRD+ G +V+DFI+M +KK+   VEK L++++K DRAR  V
Sbjct: 695 AMAFKTNMEAAETIARQLKLRDVGGQVVIDFIEMRDKKHILDVEKTLRQAMKNDRARHDV 754

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             +S+FGLLE+ RQR+ SS L  T + C  C G G  R+    AL  LR +   L     
Sbjct: 755 ARMSSFGLLELVRQRMGSSALAITMEPCPACGGTGQRRNLEWQALQGLRELRRMLRATNG 814

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
                    ++ LYLLN KR ++ E E  FG  + +
Sbjct: 815 EKCTFEATRELGLYLLNHKRDSLREMEQDFGKCLEI 850



 Score = 93.9 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           +M I     E+  V +  +  + E   +  H+++IKGNIY   +  ++ +LQAAFV YG 
Sbjct: 378 RMFISVLPGEQVEVALAEEGCLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYGA 437

Query: 64  NRHGFLPFLEIHPDY 78
            ++GFL   EIHP+Y
Sbjct: 438 GKNGFLQIDEIHPEY 452


>gi|226329355|ref|ZP_03804873.1| hypothetical protein PROPEN_03260 [Proteus penneri ATCC 35198]
 gi|225202541|gb|EEG84895.1| hypothetical protein PROPEN_03260 [Proteus penneri ATCC 35198]
          Length = 408

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 204/407 (50%), Gaps = 2/407 (0%)

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
              +K      I +++   Q L+VQ+VK+  G KGA +TT ++L  RY V MP  S    
Sbjct: 1   MKSRKKFNVRDIAQLVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGV 60

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
             R   +  + +   +           G I+RTA     + EIK+D  +L RLW+ + E 
Sbjct: 61  SQRI--DSEEERERLKQLVEEYCDENGGFIIRTAAEGVGEHEIKQDAAFLKRLWNKIIER 118

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
              +     +Y E  L +R +RD    ++  I V  +  Y + ++F+   +P     +  
Sbjct: 119 KKRNKTRIQIYGELALAQRILRDFAGSELDSIRVDSKLTYNQLQEFIGEYIPELTAKLEL 178

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           ++   PIF   G+E ++    + +V L S GY+II+QTEA+ +ID+N+G       +E+T
Sbjct: 179 HQGNQPIFDLYGVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEET 238

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
              TN+EA++ IARQLRLR+L G+I++DFIDM   ++ R V   L+++L KDR +  +  
Sbjct: 239 IFNTNIEASQAIARQLRLRNLGGIIIIDFIDMNNDEHKRRVLASLEQALSKDRVKTTING 298

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +        A  
Sbjct: 299 FSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHKTIDADR 358

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +V+  S V   L   +   + E E   G  + V   +  + + F +
Sbjct: 359 FLVYASSAVAEALKGDESHALAEVEIFVGKQVKVQTELLYSQEQFDV 405


>gi|114045993|ref|YP_736543.1| ribonuclease G [Shewanella sp. MR-7]
 gi|113887435|gb|ABI41486.1| RNAse G [Shewanella sp. MR-7]
          Length = 488

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +  K       V    G I+RTA     + E+ +D  +L R+W
Sbjct: 136 SSHVGVSQRIEQEEERSRLKKITL--PFVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 194 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQAFAQEFMPEI 252

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 253 ADKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM   ++   V   L  +L KDR 
Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSDEHKTRVLNSLNSALAKDRV 372

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C+G G +++  +V+  I R +     
Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVLCGECPACQGTGSMKTVETVSYEIFREIIRLNR 432

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L   +   + E E   G  I +      +   + +
Sbjct: 433 AYDADEFLLYCSPAVYNSLSGDESHLVAELEVYIGKRIRLQNEPMYSQHKYDV 485


>gi|290476775|ref|YP_003469686.1| RNase G [Xenorhabdus bovienii SS-2004]
 gi|289176119|emb|CBJ82924.1| RNase G (ribonuclease G) [Xenorhabdus bovienii SS-2004]
          Length = 489

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 128/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK  +   I E++   Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGEEKKNFQVRDIAELVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK I        G G I+RTA       E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEEERDR-LKSIVMDYCNEHG-GFIIRTAAEGIGAEELVQDAAFLQRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    ++  + VY E  L +R +RD     ++ I V   + + + ++F+   +P  
Sbjct: 194 GKVIERKKRNITKNKVYGELALAQRVLRDFAGAPLNRIRVDSRQTFLQLQEFIDEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y+   PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 NAKLELYQGNQPIFDIYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLEETIFNTNIEATQSIARQLRLRNLGGIIIIDFIDMGNEEHRRRVLASLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHILCDNCPTCQGRGTVKSVETVCYEILREIVRVHR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +V+    V   L   +   + E E   G  + V      + + F +
Sbjct: 434 LIDADRFLVYASPAVSEVLKGDESHALAEVEIFVGKQVKVQTEQLYSQEQFDV 486


>gi|325267526|ref|ZP_08134179.1| cytoplasmic axial filament protein [Kingella denitrificans ATCC
           33394]
 gi|324981051|gb|EGC16710.1| cytoplasmic axial filament protein [Kingella denitrificans ATCC
           33394]
          Length = 498

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 116/407 (28%), Positives = 212/407 (52%), Gaps = 2/407 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I++V+   Q +LVQ++K+   +KGA ++T +SLAGR+ V +P       I
Sbjct: 90  QRQNPNSNPRIEQVLFEGQTVLVQVIKDPINSKGARLSTQISLAGRFLVHLPQDDHIG-I 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPA-GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           S++I N  +R +L+E    L       G I+RT+  + T  E++ D  YL R+W ++   
Sbjct: 149 SQRIENEEERNSLRERLNALLPEQACHGYIIRTSAETATDAELQADIHYLTRVWGDIVAQ 208

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
           A       L+Y++  L KR +RDL+  +  EI+V     + +   F +  +   A  + +
Sbjct: 209 AKVCPPETLLYQDLPLAKRVLRDLFNDNTREILVDSRLNFDKMMAFAEQYVQDAAPKLHR 268

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           +    P+F   GIE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T
Sbjct: 269 FTGERPLFETYGIESEISRSLQPRVNLNFGSYLIIETTEAMTTIDVNTGGFVGARSFDET 328

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEA   IAR+LRLR+L G+I++DFIDM ++++  +V ++L ++L  DR RV +  
Sbjct: 329 IFKTNLEACHAIARELRLRNLGGIIIIDFIDMIQQEHRDAVLQELAKALSSDRTRVTLNG 388

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            ++ GL+E++R+R R S+     + C  C+G G +++  +V   I R +     ++    
Sbjct: 389 FTSLGLVELTRKRSRESLQHVLCEPCPVCQGRGSLKTPQTVCYEIQREIVRESRRFDVKE 448

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +     V+   L+++  ++       G  +++ +    + + + I
Sbjct: 449 FRIIASHSVIDLFLDEESQSLAMLIDFIGKPVSLSVEGSYSQEQYDI 495



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          L++ +  +ETRV VL +N + EL  E      + GNIYL  V RV P +Q+AF+D G  R
Sbjct: 20 LVNIT-PQETRVAVLEENNICELHVERNSDHSLVGNIYLGIVRRVLPGMQSAFIDIGLER 78

Query: 66 HGFLPFLEI 74
            FL  +++
Sbjct: 79 AAFLHIMDV 87


>gi|15677631|ref|NP_274790.1| cytoplasmic axial filament protein [Neisseria meningitidis MC58]
 gi|7227046|gb|AAF42130.1| cytoplasmic axial filament protein [Neisseria meningitidis MC58]
          Length = 509

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 101 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 160

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 161 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 220

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 221 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 280

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 281 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 340

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 341 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 400

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 401 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 460

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 461 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 506


>gi|282850517|ref|ZP_06259896.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745]
 gi|282580010|gb|EFB85414.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745]
          Length = 475

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 232/457 (50%), Gaps = 7/457 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D        + E    ++ +    + ++ +  N + +   D+ G     +  +  ++  I
Sbjct: 19  DEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              +   Q +LVQ+VKEE   KGA VT  +SLAGR+ VL+P  S+G  IS+KIT+    +
Sbjct: 79  LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-ETMR 136

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
           +  +      V  G G I+RTA A  +  EI RD EYL R W +V +    + +   +Y 
Sbjct: 137 SKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           + +   R +RD   +++ EIIV  + G     D +     S    V ++ D  PIF  + 
Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409
           IE QL+ L   ++ LPS G + I+ TEAL   DVNS   T +    +  A   N EAA+E
Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLRD+ G+IVVDFIDM++K++ + + K L    K D+ +  V  IS+ GL+EM+R
Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLGVQAKLDKMKTVVCGISSLGLVEMTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN-IIVHTHSDVV 528
           +R R  +       C  C G GY+ S  +V + I+R + E          + +  H +V 
Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKTDLELEVHPEVA 436

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            YL    +A +V+     G  I++V+  +++ + + +
Sbjct: 437 QYLT---KAVLVDLGESIGRKISIVVNPQISREGYSL 470



 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 4  KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          K+L++    EE R+ V+  + ++ +   E   +  +  ++Y   V  V   +QAAFVD G
Sbjct: 3  KILVNVMR-EEIRMAVIDEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61

Query: 63 GNRHGFL 69
          G+++ +L
Sbjct: 62 GSQNAYL 68


>gi|329119340|ref|ZP_08248026.1| cytoplasmic axial filament protein [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464485|gb|EGF10784.1| cytoplasmic axial filament protein [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 497

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 114/407 (28%), Positives = 210/407 (51%), Gaps = 2/407 (0%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             K  +    I+ V+   Q LLVQ++K+   +KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRKNPEAAQRIEHVLFEGQTLLVQVIKDPINSKGARLSTQISLAGRFLVHLPQEEHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
            R   +  +R NL+     L  P    G I+RT+  + T  E++ D  YL ++W ++R  
Sbjct: 149 QRI-EDHEERHNLRGRLNSLLPPDSAHGYIIRTSAETATDAELQADIGYLTKVWQDIRSK 207

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
           A    A  L+Y++  L  R +RD++  +  EI+V  ++ + + +DF    +      ++ 
Sbjct: 208 AKTRPAGSLLYQDLPLSLRVLRDMFSGNTREILVDSKENFAKMQDFAAQYVQDAPEKIKL 267

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           +    P+F    +E +++   Q  V+L    Y+II  TEA+ +IDVN+G        ++T
Sbjct: 268 FNGERPLFETHNVEAEINRALQPRVSLNFGSYLIIEATEAMTTIDVNTGGFVGARNFDET 327

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEA   IAR+LRLR+L G+I++DFIDM    +  +V ++L ++L  DR RV +  
Sbjct: 328 IFKTNLEACHAIARELRLRNLGGIIIIDFIDMASDIHREAVLQELAKALSFDRTRVTLNG 387

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            ++ GL+E++R+R R ++     + C  C+G G +++  +V   I R +     ++ A  
Sbjct: 388 FTSLGLVELTRKRTRENLSHVLCEPCPACQGRGRLKTAQTVCYEIQREIVRENRRFDAKE 447

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +    +V+   L+++  ++       G  I++ +      + F +
Sbjct: 448 FRILASPEVIDLFLDEESQSLAMLIDFIGKPISLAVENSYTQEQFDV 494


>gi|313669004|ref|YP_004049288.1| ribonuclease [Neisseria lactamica ST-640]
 gi|313006466|emb|CBN87929.1| putative ribonuclease [Neisseria lactamica 020-06]
          Length = 497

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W+++RE A
Sbjct: 149 QRIEDDAERSSLRERLNKLLPENACRGYIIRTNAENTTDEQLQSDIDYLTKVWEHIREQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E +++   Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEINRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E      + GNIYL  V RV P +Q+AF+D G  
Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76

Query: 65 RHGFLPFLEI-----HPDYYQ 80
          R  FL  +++     +PD  Q
Sbjct: 77 RAAFLHIVDVLEQRRNPDETQ 97


>gi|163750437|ref|ZP_02157676.1| ribonuclease G [Shewanella benthica KT99]
 gi|161329758|gb|EDQ00746.1| ribonuclease G [Shewanella benthica KT99]
          Length = 488

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 122/396 (30%), Positives = 196/396 (49%), Gaps = 3/396 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I ++++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP +S      R      + 
Sbjct: 93  IAQLVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHIGVSQR--IESEEV 150

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +   +      V    G I+RTA  S  + E+ +D  +L R+W  V E         L+Y
Sbjct: 151 RARLKGLTQPFVDEDGGFIIRTAAESAGEQELVQDAAFLRRVWAKVCERR-KRPGVSLLY 209

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++  L  R +RD    ++ +I V   K + E   F +  MP  A  +  Y  P PIF   
Sbjct: 210 QDLALPVRIVRDFVGTELDQIQVDSSKTFDELLAFSQEFMPEIADKIVHYSGPVPIFDLY 269

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E ++      +V L S GY+II+QTEA+ ++D+N+G       +EDT   TNLEA + 
Sbjct: 270 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEDTIFNTNLEATQA 329

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM + ++ + V   L+ +L  DR +  +   S  GL+EM+R
Sbjct: 330 IARQLRLRNLGGIIIIDFIDMLDAEHQKRVLNSLELALSLDRVKTNISGFSGLGLVEMTR 389

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+       C  C G G +++  +V+  I R +      Y A   +V+    V  
Sbjct: 390 KRTRESLEHVLCGECPVCLGTGSLKTVETVSYEIFREIIRLNRSYDADEFLVYCSPAVHS 449

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            L  ++   + E     G  + +      A   F +
Sbjct: 450 SLTGEESHLVAELGVYIGKRVKLKNEPMYAQNKFDV 485



 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++LI+ +   E RV ++    ++E+  E   K+ + GNIY  KV+RV P +QAAFVD
Sbjct: 1  MGSELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIVP 75


>gi|298368998|ref|ZP_06980316.1| ribonuclease G [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283001|gb|EFI24488.1| ribonuclease G [Neisseria sp. oral taxon 014 str. F0314]
          Length = 497

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + +   L   A  G I+RT   + T  +++ D  YL ++W++++E A
Sbjct: 149 QRIEDDTERNSLRERLTNLLPEDACHGYIIRTNAENATDEQLQSDIHYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD++  D  +I+V   + +R    F +  +      +  +
Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSLDTQKILVDSTENHRRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  ++   I R V     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTICYEIQREVVREARRYDAQSF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          L++ +  +ETRV VL +N + EL  E      + GNIYL  V RV P +Q+AF+D G  R
Sbjct: 19 LVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLER 77

Query: 66 HGFLPFLEI-----HPDYYQ 80
            FL  +++     +PD  Q
Sbjct: 78 AAFLHIVDVLEQRRNPDETQ 97


>gi|261378252|ref|ZP_05982825.1| cytoplasmic axial filament protein [Neisseria cinerea ATCC 14685]
 gi|269145333|gb|EEZ71751.1| cytoplasmic axial filament protein [Neisseria cinerea ATCC 14685]
          Length = 497

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEEHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D  YL ++W++++E A
Sbjct: 149 QRIEDDTERNNLRERLNKLLPEKACHGYIIRTNAENATDEQLQSDINYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD++  D  +I+V     Y     F +  +      +  +
Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSCDTQKILVDSTANYGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E +++   Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEINRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAQSF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494


>gi|104780294|ref|YP_606792.1| ibonuclease G [Pseudomonas entomophila L48]
 gi|95109281|emb|CAK13978.1| ibonuclease G [Pseudomonas entomophila L48]
          Length = 485

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 210/399 (52%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP +S      +        
Sbjct: 84  ITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVGISLKIEEEAERE 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  +   +     ++    G ILRTA       +I +D  YL RLW+ +        AP 
Sbjct: 144 RLKQVVNDCMAQEDMKDAGGFILRTAAEGARAEDILQDIRYLRRLWEQIGAQISTCGAPT 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PIF
Sbjct: 204 VIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR++ G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNIGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+ +   + C  C+G G +++  ++   I R +      Y A    V  +  
Sbjct: 384 MTRKRTRESLEQVLCEPCAACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + E EA  G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482


>gi|240127507|ref|ZP_04740168.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685883|ref|ZP_06152745.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626167|gb|EEZ58567.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 497

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIIREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494


>gi|194097742|ref|YP_002000783.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998245|ref|ZP_04718169.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae 35/02]
 gi|240013429|ref|ZP_04720342.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI18]
 gi|240015870|ref|ZP_04722410.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae FA6140]
 gi|240080010|ref|ZP_04724553.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae FA19]
 gi|240112218|ref|ZP_04726708.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae MS11]
 gi|240114962|ref|ZP_04729024.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID18]
 gi|240117246|ref|ZP_04731308.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID1]
 gi|240120500|ref|ZP_04733462.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID24-1]
 gi|240122800|ref|ZP_04735756.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID332]
 gi|240124994|ref|ZP_04737880.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493024|ref|ZP_05106195.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 1291]
 gi|260441222|ref|ZP_05795038.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI2]
 gi|268594101|ref|ZP_06128268.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 35/02]
 gi|268596153|ref|ZP_06130320.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae FA19]
 gi|268598278|ref|ZP_06132445.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae MS11]
 gi|268600629|ref|ZP_06134796.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID18]
 gi|268602942|ref|ZP_06137109.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID1]
 gi|268681413|ref|ZP_06148275.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID332]
 gi|268683580|ref|ZP_06150442.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|291044558|ref|ZP_06570267.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI2]
 gi|193933032|gb|ACF28856.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512064|gb|EEH61409.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 1291]
 gi|268547490|gb|EEZ42908.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 35/02]
 gi|268549941|gb|EEZ44960.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae FA19]
 gi|268582409|gb|EEZ47085.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae MS11]
 gi|268584760|gb|EEZ49436.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID18]
 gi|268587073|gb|EEZ51749.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID1]
 gi|268621697|gb|EEZ54097.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID332]
 gi|268623864|gb|EEZ56264.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|291011452|gb|EFE03448.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI2]
          Length = 497

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494


>gi|238018947|ref|ZP_04599373.1| hypothetical protein VEIDISOL_00807 [Veillonella dispar ATCC 17748]
 gi|237864431|gb|EEP65721.1| hypothetical protein VEIDISOL_00807 [Veillonella dispar ATCC 17748]
          Length = 475

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 143/457 (31%), Positives = 230/457 (50%), Gaps = 7/457 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D        + E    ++ +    + ++ +  N + +   D+ G     +  +  ++  I
Sbjct: 19  DEEGQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFIDIGGSQNAYLNLQQGKEQKI 78

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              +   Q +LVQ+VKEE   KGA VT  +SLAGR+ VL+P  S+G  IS+KIT+    +
Sbjct: 79  LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-EAVR 136

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
           +  +      V  G G I+RTA A  +  EI RD EYL R W +V +    + +   +Y 
Sbjct: 137 SKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           + +   R +RD   +++ EIIV  + G     D +     S    V ++    PIF  + 
Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRGSTPIFKANH 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409
           IE QL+ L   ++ LPS G + I+ TEAL   DVNS   T +    +  A   N EAA+E
Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLRD+ G+IVVDFIDM++K + + + + L    K D+ +  V  IS+ GL+EM+R
Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKSHQQELLQLLSAQAKLDKMKTVVCGISSLGLVEMTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528
           +R R  +       C  C G GY+ S  +V + I+R + E         N+ +  H +V 
Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIIRRIRELFKSGRIKSNLEIEVHPEVA 436

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            YL    +A + E     G  I++V+  +++ + + +
Sbjct: 437 EYLT---KAVLEELGDSIGRKISIVVNPQISREGYSL 470



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 4  KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          K+L++    EE R+ V+  + ++ +   E   +  +  ++Y   V  V   +QAAF+D G
Sbjct: 3  KILVNVMR-EEIRMAVVDEEGQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFIDIG 61

Query: 63 GNRHGFL 69
          G+++ +L
Sbjct: 62 GSQNAYL 68


>gi|332967836|gb|EGK06935.1| cytoplasmic axial filament protein [Kingella kingae ATCC 23330]
          Length = 498

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/406 (27%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +     + I+ V+   Q +LVQ++K+   +KGA ++T +SLAGR+ V +P        
Sbjct: 90  QRQNPDSHHRIEHVLFEGQTILVQVIKDPINSKGARLSTQISLAGRFLVHLPQDEHIGIS 149

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R           + +   L   A  G I+RT+  + +  E++ D  YL R+W+++   A
Sbjct: 150 QRIENEDDRSSLRQRLNALLPEQACHGYIIRTSAETASDAELQADINYLTRVWNDICNQA 209

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L KR +RDL+  +  EI+V     + +   F +  +   A  + ++
Sbjct: 210 KLCPPETLLYQDLPLAKRVLRDLFNDNTREILVDSRLNFDKMLAFAQQYVQDAADKLHRF 269

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F   GIE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 270 KGERPLFETYGIEAEISRALQPRVNLNFGSYLIIETTEAMTTIDVNTGGFVGARNFDETI 329

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDME  ++  +V ++L ++L  DR RV +   
Sbjct: 330 FKTNLEACHAIARELRLRNLGGIIIIDFIDMELPEHREAVLQELAKALSFDRTRVTLNGF 389

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           +  GL+E++R+R R S+     + C  C+G G +++  ++   I R V     ++ A   
Sbjct: 390 TTLGLVELTRKRSRESLQHVLCEPCPTCQGRGSLKTAQTICYEIQREVVRESRRFEAKEF 449

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V+   L+++  ++       G  I++ +    + + + I
Sbjct: 450 RIIASPSVIDLFLDEESQSLAMLIDFIGKPISLAVESLYSQEQYDI 495


>gi|187929474|ref|YP_001899961.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J]
 gi|309781751|ref|ZP_07676484.1| ribonuclease G [Ralstonia sp. 5_7_47FAA]
 gi|187726364|gb|ACD27529.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J]
 gi|308919392|gb|EFP65056.1| ribonuclease G [Ralstonia sp. 5_7_47FAA]
          Length = 489

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/412 (28%), Positives = 202/412 (49%), Gaps = 1/412 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              +        Q  I++ +   Q L+VQ++K+  G KGA ++T +S+AGR  V +P   
Sbjct: 75  HPRDAKDAPPTPQVAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDP 134

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 +             +   +      G I+RT     T  E+  D  YL ++W  
Sbjct: 135 HIGISQKIGNEAEREALRARVTAMVPTDERGGFIVRTIAEESTDEELANDVAYLRKIWAT 194

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +R  A    AP ++Y++ NL +R +RD    +   I V   + +++  +F +   P+   
Sbjct: 195 IRHNATTLPAPSILYQDLNLAQRVLRDFVTDETRSIQVDSRENHQKLVEFAQEYTPAVVE 254

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    IE +++      V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 255 RLTHYTGERPIFDLYNIEAEVERALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            +DT  +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +L+++L +DR R+
Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMESAEHRDAVLAELRKALSRDRTRI 374

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            V + S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+
Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE-LADKLFYI 565
                 +     V+   L ++   +       G  I++ +     + + + I
Sbjct: 435 NPREFRILASQSVIDLFLEEESQHLAMLGDFIGKPISLQVESSAASQEQYDI 486


>gi|24375581|ref|NP_719624.1| ribonuclease G [Shewanella oneidensis MR-1]
 gi|24350470|gb|AAN57068.1|AE015840_4 ribonuclease G [Shewanella oneidensis MR-1]
          Length = 488

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 197/413 (47%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +  K       V    G I+RTA     + E+ +D  +L R+W
Sbjct: 136 SSHIGVSQRIEQEEERSRLKKITL--PFVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 194 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQAFAQEFMPEI 252

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 253 ADKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM   ++   V   L  +L KDR 
Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSDEHKTRVLNSLNSALAKDRV 372

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V A S  GL+EM+R+R R S+       C  CKG G +++  +V+  I R +     
Sbjct: 373 KTNVSAFSGLGLVEMTRKRTRESLEHVLCGECPACKGTGSMKTVETVSYEIFREIIRLNR 432

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L   +   + E E   G  I +      +   + +
Sbjct: 433 AYDADEFLLYCSPAVYNSLSGDESHLVAELEVYIGKRIRLQNEPMYSQHKYDV 485


>gi|59800573|ref|YP_207285.1| putative ribonuclease G / cytoplasmic axial filament protein
           [Neisseria gonorrhoeae FA 1090]
 gi|293397687|ref|ZP_06641893.1| ribonuclease G [Neisseria gonorrhoeae F62]
 gi|59717468|gb|AAW88873.1| putative ribonucleases G / cytoplasmic axial filament protein
           [Neisseria gonorrhoeae FA 1090]
 gi|291611633|gb|EFF40702.1| ribonuclease G [Neisseria gonorrhoeae F62]
          Length = 497

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHDF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E      + GNIYL  V RV P +Q+AF+D G  
Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 77 RAAFLHIVDV 86


>gi|307826260|ref|ZP_07656469.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96]
 gi|307732722|gb|EFO03590.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96]
          Length = 484

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 202/397 (50%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I+  +   Q ++VQ+VK+  G+KGA +TT +S+  R+ V MP         R       
Sbjct: 85  NIEHYLHEGQHIIVQVVKDPLGSKGARLTTEISIPSRFQVYMPYAHNSGVSQRIECETER 144

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
            +    +          G I RTA     +  +  D  +L++LW+++      +     +
Sbjct: 145 VRLRTCLDTFRLENKCGGFIARTAAECVDETVLIADMTFLLKLWESIAAKIAGAKPKQFI 204

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           +++  L  R +RDLY + I  + V   + Y    +F ++  P    ++  Y    P+F  
Sbjct: 205 HKDLPLSIRTLRDLYREGIERVRVDSRETYHRLVEFAEIFAPEIVPVIEHYTGECPVFDI 264

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
             +E ++    + +V L S G+++ +QTE++ ++DVN+G       +E+T  +TNLEAA+
Sbjct: 265 YSVEDEIQKALERKVNLKSGGHLVFDQTESMTTVDVNTGGYVGGRNLEETIFKTNLEAAQ 324

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            I+RQLRLR+L G+I++DFIDM+ + + + V +  +  L+KD A+  +  +S  GL+EM+
Sbjct: 325 TISRQLRLRNLGGIIIIDFIDMQSEDHKKQVLQAFERHLEKDHAKTNITEVSVLGLVEMT 384

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R+R R S+     + C+ C G G +++  S+ L I R +   + QY    I+V   ++VV
Sbjct: 385 RKRTRESLEHILCEPCSACGGRGVLKTAESMCLEIFREIIREVRQYKVKKILVLASNEVV 444

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             LL+++   + E E    V I      E   + + +
Sbjct: 445 EMLLDEEADMLAELEVFLSVRIKFRAEAEYNQEQYDV 481


>gi|300113170|ref|YP_003759745.1| Rne/Rng family ribonuclease [Nitrosococcus watsonii C-113]
 gi|299539107|gb|ADJ27424.1| ribonuclease, Rne/Rng family [Nitrosococcus watsonii C-113]
          Length = 490

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 223/399 (55%), Gaps = 2/399 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I  ++   Q +LVQ++K+  G KGA +TT +S+A RY V MP  S G  +S KI +P 
Sbjct: 90  PSITSLLSEGQEVLVQVIKDPIGTKGARLTTQISIASRYLVYMPEMS-GIGVSLKIEDPE 148

Query: 228 DRKNLKEIARGLEVPAGMG-VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +R+ LK +   + +    G  I+RT      + ++  D E+L +LW  ++E +    A  
Sbjct: 149 ERQRLKNLLASVLLEDDRGGYIIRTVAEGAVEEDLCTDMEFLHKLWRTIKERSQTVKAGS 208

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           +V+++ +L+ R +RD   + +  + +   + Y +  DF +  +P     +  Y+   PIF
Sbjct: 209 VVHKDLSLVMRTMRDFVHERVERVRIDSRETYHKLVDFAERFIPDLLTTLECYQGERPIF 268

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              GIE ++      +V L S GY+II+QTEA+ +ID+N+G       +E+T  +TNLEA
Sbjct: 269 DLYGIEDEIQKSLGRKVQLKSGGYLIIDQTEAMATIDINTGAFVGHRNLEETIFKTNLEA 328

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+ I RQLRLR+L G+I++DFIDMEE+ + R V + L++ L+KD A+  +  +S+ GL+E
Sbjct: 329 AQAICRQLRLRNLGGIIIIDFIDMEEEDHKRQVLRALEKGLEKDHAKTHISEVSSLGLVE 388

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+ +   + C  C G   +++  +V   ILR +     Q+ A   +V    +
Sbjct: 389 MTRKRTRESLEQILCEPCPTCNGRATVKTVETVCYEILREILREARQFEASQYLVIAAQE 448

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  L++++ A++ E E+  G  +     +    + F +
Sbjct: 449 VVDRLMDEESASVAELESFIGKPLKFQTELLYMREQFDV 487



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   ETRV V+ +  V+EL  E   ++   GNIY  +V R+ P +QAAFV+
Sbjct: 1  MSEEILINVT-PSETRVAVVENGVVQELYIERSSRRGWVGNIYKGQVNRILPGMQAAFVN 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHASDI 73


>gi|325131704|gb|EGC54409.1| ribonuclease G [Neisseria meningitidis M6190]
          Length = 509

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 101 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 160

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 161 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 220

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 221 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 280

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 281 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 340

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 341 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 400

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 401 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 460

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 461 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 506



 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E   +  + GNIYL  V RV P +Q+AF+D    
Sbjct: 30 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIDLE 88

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 89 RAAFLHIVDV 98


>gi|301156491|emb|CBW15962.1| ribonuclease G [Haemophilus parainfluenzae T3T1]
          Length = 491

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                +   +K  R   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDVNEQKQFRAKTISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    T+ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGATEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKGKYPTRSKIYGEPALPQRILRDFIGANLEKIHIDSKLCFNEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +  +  V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SEKLMLYTGNQPIFDIYGVERGIQNALEKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L+E+L KDR 
Sbjct: 315 RNLDETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVIESLEEALSKDRV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C+G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCQGRGRVKTVETVCYEIMREIIRVNH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+ ++   ++ E E      + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVADYLIKEESHGLLPEIEMFISKQVQVKTEQYYNQEQFDV 488


>gi|325139675|gb|EGC62213.1| ribonuclease G [Neisseria meningitidis CU385]
          Length = 518

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 110 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 169

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 170 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 229

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 230 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 289

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 290 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 349

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 350 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 409

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 410 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 469

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 470 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 515



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +L++ +  +ETRV VL +N + EL  E   +  + GNIYL  V RV P +Q+AF+D G  
Sbjct: 39  ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 97

Query: 65  RHGFLPFLEI 74
           R  FL  +++
Sbjct: 98  RAAFLHIVDV 107


>gi|297620642|ref|YP_003708779.1| ribonuclease G [Waddlia chondrophila WSU 86-1044]
 gi|297375943|gb|ADI37773.1| ribonuclease G [Waddlia chondrophila WSU 86-1044]
          Length = 511

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 255/490 (52%), Gaps = 9/490 (1%)

Query: 83  FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
              R ALLK   +     E   D    G++      ++      A       E   I  +
Sbjct: 11  KEIRCALLKHGVLHDLIVERKKDRQLTGNIYKGKVKNILHNIQSAFIDINEGENGFIHIS 70

Query: 143 NDVVSNVEDVKGGSPED-------VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195
           + + +  +  +    E           + K    I EV+K  Q +LVQ++KE  G KGA 
Sbjct: 71  DIIENTKKFHEQFDLEFDLDYDISKINEKKADLNIDEVLKLDQPVLVQVIKEPMGTKGAR 130

Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255
           +T+ +S+AGRY VL+PN+S    +SR+I +   R+ LK++ R  E+P  MG+I RTA A 
Sbjct: 131 LTSNISIAGRYLVLLPNSSHRG-VSRRIEDRHTRERLKKLIRSFEMPQDMGLICRTASAH 189

Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
            +   +  +   L++ W+ + E   +     +++ E +LIKRA+     K I  I++   
Sbjct: 190 ASPEMLIDEANDLLQNWEQIIEQFNSKEESGILFAESDLIKRALITAADKKIDRILIDDY 249

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
             Y++ K         +   +  Y D  P++ R  +E ++D   + ++ L S GY+  ++
Sbjct: 250 NIYQKCKRHYSKYQHEHPLKIELYRDKVPMYERFNVEKEIDKSLRRKIWLNSGGYLFFDR 309

Query: 376 TEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434
           TEA+ +IDVNSGRS+     +E+T +Q NLEAAEEI+RQLRLR++ GL++ DFIDM  +K
Sbjct: 310 TEAMYTIDVNSGRSSSSDSNVEETLVQINLEAAEEISRQLRLRNIGGLVICDFIDMRYRK 369

Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494
           N R V  +L++ +K+D A+  + ++S+FGL+EM+RQR R S++++    C YC G+G I+
Sbjct: 370 NQRRVLDRLRDCMKEDSAKCTILSMSDFGLVEMTRQRSRGSLIQTVFTTCPYCAGSGLIK 429

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
           +  SVA+ + RS+++ +       + +  H ++  YL    +  ++    +    + +  
Sbjct: 430 THESVAIELERSLKKVVGLSQQFALKLTVHPELYRYLCIDDKEYLLALADKMNARLEIEQ 489

Query: 555 GIELADKLFY 564
              L    F 
Sbjct: 490 DDNLHINDFR 499


>gi|146281406|ref|YP_001171559.1| cytoplasmic axial filament protein [Pseudomonas stutzeri A1501]
 gi|145569611|gb|ABP78717.1| cytoplasmic axial filament protein [Pseudomonas stutzeri A1501]
          Length = 485

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 219/401 (54%), Gaps = 5/401 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP TS    IS +I +  +
Sbjct: 83  PINALVHEGQSLVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRTSHVG-ISLRIEDEAE 141

Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           R+ LK++        G+    G ILRTA     + EI  D  YL RLW+ +      + A
Sbjct: 142 RERLKQVVAECVAAEGIQEAGGFILRTAAEGAGRDEILMDIRYLRRLWEQIAGQIKTAAA 201

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P ++YE+ +L  R +RDL    I +I +   + +++   F+  LMP     +  Y    P
Sbjct: 202 PTVIYEDLSLAMRTLRDLVNPRIEKIRIDSRENFQKVSQFVGELMPELGDRLEHYPGERP 261

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   G+E ++    + +V L S GY+II+  EA+ +IDVN+G       +E+T  +TNL
Sbjct: 262 IFDLYGVEDEIQKALERKVMLKSGGYLIIDPAEAMTTIDVNTGAFVGHRTLEETIFKTNL 321

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           E+A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL
Sbjct: 322 ESATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGL 381

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R R S+ +   + C  C+G G +++  +V   I R +      Y A    V  +
Sbjct: 382 VQMTRKRTRESLEQVLCEPCMCCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLAN 441

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             V+  LL+++   + + EA  G SI   +    + + + +
Sbjct: 442 QKVIDRLLDEESGNVADLEAFIGRSIKFQVESMYSQEQYDV 482



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILMNIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+  LEI
Sbjct: 60 IGLDRAAFIHALEI 73


>gi|296315112|ref|ZP_06865053.1| cytoplasmic axial filament protein [Neisseria polysaccharea ATCC
           43768]
 gi|296838025|gb|EFH21963.1| cytoplasmic axial filament protein [Neisseria polysaccharea ATCC
           43768]
          Length = 497

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEEHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDTERSNLRERLNKLLPEKACHGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEIGRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR R+ +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRITLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 THLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAQSF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494


>gi|319789105|ref|YP_004150738.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1]
 gi|317113607|gb|ADU96097.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1]
          Length = 500

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 151/421 (35%), Positives = 253/421 (60%), Gaps = 3/421 (0%)

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
           V +  +++    E   +       ++EV+   Q LLVQ+ KE  G KG  VTT +++ G 
Sbjct: 79  VKDAVNLELDEEELEEEAEFELPPVEEVLSVGQELLVQVAKEPIGTKGPRVTTNITIPGH 138

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VL+P  +K   +SR+IT+  +R+ LKEIA  ++ P   G+I+RTA    +K E+++D 
Sbjct: 139 YLVLLPTINKLG-LSRRITDEAERERLKEIASEIKPP-EYGLIVRTAAEGASKEELEKDL 196

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
            Y++++W+ ++E A     P L+Y++  ++ + +RDL  ++++E+I+     +  A  F 
Sbjct: 197 NYILKVWEGLKEKAQRRPPPTLLYQDLEIVPKTLRDLLTEEVTEVIIDSRSEFERALSFT 256

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           K  +P  A  ++ YE   P+F +  +E  ++     +V LP  GY++I++TEALVSIDVN
Sbjct: 257 KGFIPKLADRIKLYEGKIPLFEKFQVEKAIEKALSRKVYLPGGGYIVIDETEALVSIDVN 316

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           SG+  +   +E+TAL+ NL+AA EIARQLRLRD+ G+IV+DFIDM+E +N   + K L+E
Sbjct: 317 SGKFKKSSTLEETALEINLKAAREIARQLRLRDIGGIIVIDFIDMKEPENKELLLKTLEE 376

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
            L KDRAR ++ ++S+ GL+EM+R+R++ S+ ++ T  C YC+G G ++S  +VA  I R
Sbjct: 377 ELSKDRARTKIVSMSDLGLVEMTRKRVKKSLGKTLTVTCPYCEGRGRVKSPETVAFEIER 436

Query: 506 SVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
            +  +L    A   + V+ +  V   L N++   +   +  F V I VV   +   + F 
Sbjct: 437 ELLSFLKGVRAGRPVTVYANPSVAQKLKNEESEILERIKEMFKVPIKVVPVQDYHIEKFT 496

Query: 565 I 565
           I
Sbjct: 497 I 497



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI++S  +E R+ VL +  + E   E +  + + GNIY  KVT++ P++QAAFVD G
Sbjct: 12 KQILINSST-KEVRIAVLEEGELVEFYVERKGNRGLVGNIYKGKVTKIVPAVQAAFVDIG 70

Query: 63 GNRHGFLPFLE 73
           +R  FL   +
Sbjct: 71 ESRSAFLYVKD 81


>gi|269798279|ref|YP_003312179.1| ribonuclease, Rne/Rng family [Veillonella parvula DSM 2008]
 gi|269094908|gb|ACZ24899.1| ribonuclease, Rne/Rng family [Veillonella parvula DSM 2008]
          Length = 475

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 232/457 (50%), Gaps = 7/457 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D        + E    ++ +    + ++ +  N + +   D+ G     +  +  ++  I
Sbjct: 19  DEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              +   Q +LVQ+VKEE   KGA VT  +SLAGR+ VL+P  S+G  IS+KIT+    +
Sbjct: 79  LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-EALR 136

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
           +  +      V  G G I+RTA A  +  EI RD EYL R W +V +    + +   +Y 
Sbjct: 137 SKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           + +   R +RD   +++ EIIV  + G     D +     S    V ++ D  PIF  + 
Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409
           IE QL+ L   ++ LPS G + I+ TEAL   DVNS   T +    +  A   N EAA+E
Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLRD+ G+IVVDFIDM++K++ + + K L    K D+ +  V  IS+ GL+EM+R
Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLGVQAKLDKMKTVVCGISSLGLVEMTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528
           +R R  +       C  C G GY+ S  +V + I+R + E         N+ +  H +V 
Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKTNLEIEVHPEVA 436

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            YL    +A + +     G  I++V+  +++ + + +
Sbjct: 437 QYLT---KAVLEDLGESIGRKISIVVNPQISREGYSL 470



 Score = 83.9 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 4  KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          K+L++    EE R+ V+  + ++ +   E      +  ++Y   V  V   +QAAFVD G
Sbjct: 3  KILVNVMR-EEIRMAVIDEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVDIG 61

Query: 63 GNRHGFL 69
          G+++ +L
Sbjct: 62 GSQNAYL 68


>gi|317163530|gb|ADV07071.1| putative ribonuclease G / cytoplasmic axial filament protein
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 479

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 71  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 130

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 131 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 190

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 191 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 250

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 251 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 310

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 311 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 370

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 371 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 430

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 431 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 476


>gi|161869427|ref|YP_001598594.1| putative ribonucleases G / cytoplasmic axial filament protein
           [Neisseria meningitidis 053442]
 gi|218767623|ref|YP_002342135.1| hypothetical protein NMA0672 [Neisseria meningitidis Z2491]
 gi|254804391|ref|YP_003082612.1| ribonuclease G [Neisseria meningitidis alpha14]
 gi|304388294|ref|ZP_07370410.1| cytoplasmic axial filament protein [Neisseria meningitidis ATCC
           13091]
 gi|121051631|emb|CAM07932.1| hypothetical protein NMA0672 [Neisseria meningitidis Z2491]
 gi|161594980|gb|ABX72640.1| putative ribonucleases G / cytoplasmic axial filament protein
           [Neisseria meningitidis 053442]
 gi|254667933|emb|CBA04134.1| ribonuclease G [Neisseria meningitidis alpha14]
 gi|254670278|emb|CBA05570.1| putative ribonuclease [Neisseria meningitidis alpha153]
 gi|261393125|emb|CAX50730.1| ribonuclease G (RNase G; cytoplasmic axial filament protein)
           [Neisseria meningitidis 8013]
 gi|304337725|gb|EFM03878.1| cytoplasmic axial filament protein [Neisseria meningitidis ATCC
           13091]
 gi|308389892|gb|ADO32212.1| cytoplasmic axial filament protein [Neisseria meningitidis
           alpha710]
 gi|316984390|gb|EFV63363.1| ribonuclease G [Neisseria meningitidis H44/76]
 gi|319409881|emb|CBY90196.1| ribonuclease G (RNase G; cytoplasmic axial filament protein)
           [Neisseria meningitidis WUE 2594]
 gi|325127603|gb|EGC50523.1| ribonuclease G [Neisseria meningitidis N1568]
 gi|325129591|gb|EGC52413.1| ribonuclease G [Neisseria meningitidis OX99.30304]
 gi|325133696|gb|EGC56353.1| ribonuclease G [Neisseria meningitidis M13399]
 gi|325135660|gb|EGC58276.1| ribonuclease G [Neisseria meningitidis M0579]
 gi|325137720|gb|EGC60297.1| ribonuclease G [Neisseria meningitidis ES14902]
 gi|325141704|gb|EGC64163.1| ribonuclease G [Neisseria meningitidis 961-5945]
 gi|325197705|gb|ADY93161.1| ribonuclease G [Neisseria meningitidis G2136]
 gi|325201562|gb|ADY97016.1| ribonuclease G [Neisseria meningitidis M01-240149]
 gi|325206700|gb|ADZ02153.1| ribonuclease G [Neisseria meningitidis M04-240196]
 gi|325207543|gb|ADZ02995.1| ribonuclease G [Neisseria meningitidis NZ-05/33]
          Length = 497

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E   +  + GNIYL  V RV P +Q+AF+D G  
Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 77 RAAFLHIVDV 86


>gi|261401311|ref|ZP_05987436.1| cytoplasmic axial filament protein [Neisseria lactamica ATCC 23970]
 gi|269208690|gb|EEZ75145.1| cytoplasmic axial filament protein [Neisseria lactamica ATCC 23970]
          Length = 497

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDAERSSLRERLNKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR R+ +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRITLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 THLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E      + GNIYL  V RV P +Q+AF+D G  
Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 77 RAAFLHIVDV 86


>gi|293391951|ref|ZP_06636285.1| ribonuclease, Rne/Rng family [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952485|gb|EFE02604.1| ribonuclease, Rne/Rng family [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 491

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 132/485 (27%), Positives = 230/485 (47%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E        G++       +      A      E+ + + A
Sbjct: 12  PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I +++   Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEQKQFV------VKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     + LKE+A  L    G G I+RTA    +++++
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERAR-LKELALPLCDELG-GFIIRTAAEGASELDL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D E+L RLW  V E         ++Y E  L +R +RD     +  I +     + E 
Sbjct: 184 QQDAEFLKRLWRKVLERRAKYPTRSMLYGELALTQRILRDFIGAKLDRIHIDSRLCFNEV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F +  +P+    +  Y    P+F    +E  + +     V L S GY+II QTEA+ +
Sbjct: 244 KQFTEEFIPNLTDKLILYAGNQPLFDVYSVETGIHNALDKRVNLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+++++   V +
Sbjct: 304 IDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQKEEHRTRVLE 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+L  D  +  V   +  GL+EM+R+R R S+       C  C+G G +++  +V  
Sbjct: 364 SLQEALAGDPVKTNVNGFTQLGLVEMTRKRTRESLERVLCGDCPACQGRGRVKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELAD 560
            I+R +      + +   +V+    V  YL+N++    + E E   G  I V   +    
Sbjct: 424 EIMREIIRVHHVFASEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQVKTEVFYTQ 483

Query: 561 KLFYI 565
           + F +
Sbjct: 484 EQFDV 488



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETR+ ++    ++E+  E + K+ I GNIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|319424914|gb|ADV52988.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200]
          Length = 488

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +  K       V    G I+RTA     + E+ +D  +L R+W
Sbjct: 136 SSHVGVSQRIELEEERSRLKKITL--PYVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 194 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFDELQTFAQEFMPEI 252

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 253 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM  +++   V   L  +L KDR 
Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLNEEHKTRVLNSLNSALAKDRV 372

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V+  I R +     
Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVVCSECPACHGTGSMKTVETVSYEIFREIIRLNR 432

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L  ++   I E E      I +      +   + +
Sbjct: 433 AYDADEFLLYCSPAVYQSLSGEESHLIAELEVYISKRIRLQNEPMYSQHKYDV 485


>gi|83746488|ref|ZP_00943539.1| Ribonuclease G [Ralstonia solanacearum UW551]
 gi|207723775|ref|YP_002254173.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein)
           [Ralstonia solanacearum MolK2]
 gi|207743800|ref|YP_002260192.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein)
           [Ralstonia solanacearum IPO1609]
 gi|83726819|gb|EAP73946.1| Ribonuclease G [Ralstonia solanacearum UW551]
 gi|206588979|emb|CAQ35941.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein)
           [Ralstonia solanacearum MolK2]
 gi|206595200|emb|CAQ62127.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein)
           [Ralstonia solanacearum IPO1609]
          Length = 489

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 1/412 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              +           I++ +   Q L VQ++K+  G KGA ++T +S+AGR  V +P   
Sbjct: 75  HPRDAKDAPPTPHVAIEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLPQDP 134

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 +           + +   +      G I+RT     T  E+  D  YL ++W  
Sbjct: 135 HIGISQKIGNETDREALRQRVTGMVPADERGGFIVRTIAEESTDEELANDVAYLRKIWAT 194

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +R  A    AP ++Y++ NL +R +RD    D   I V   + Y++  +F +   P+   
Sbjct: 195 IRHNATTLPAPSILYQDLNLAQRVLRDFVTDDTRSIQVDSRENYQKLVEFAQEYTPAVVE 254

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    IE +++      V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 255 RLTHYTGERPIFDLYNIEAEIERALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            +DT  +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +L+ +L +DR R+
Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMESTEHRDAVLAELRRALARDRTRI 374

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            V + S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+
Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI-ELADKLFYI 565
                 +     V+   L ++   +       G  I++ +     + + + I
Sbjct: 435 NPREFRILASQSVIDLFLEEESQHLAMLGDFIGKPISLQVESAAASQEQYDI 486



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+  +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1  MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   +I HP
Sbjct: 60 IGLERAAFLHVADIWHP 76


>gi|325578058|ref|ZP_08148252.1| ribonuclease G [Haemophilus parainfluenzae ATCC 33392]
 gi|325160291|gb|EGC72419.1| ribonuclease G [Haemophilus parainfluenzae ATCC 33392]
          Length = 491

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                +   +K  R   I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDVNEQKQFRAKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    T+ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIVRTATEGATEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E ++F    MP  
Sbjct: 195 RKVLERKGKYPTRSKIYGEPALPQRILRDFIGANLEKIHIDSKLCFNEVREFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +  +  V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SEKLMLYTGNQPIFDIYGVERGIQNALEKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IA+QL+LR+L G+I++DFIDM+  ++   V + L+E+L KDR 
Sbjct: 315 RNLDETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVIESLEEALSKDRV 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C+G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCQGRGRVKTVETVCYEIMREIIRVNH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+ ++   ++ E E      + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVADYLIKEESHGLLPEIEMFISKQVQVKTEQYYNQEQFDV 488


>gi|309379641|emb|CBX21812.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 497

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W+++RE A
Sbjct: 149 QRIEDDAERSSLRERLNKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIREQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E      + GNIYL  V RV P +Q+AF+D G  
Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 77 RAAFLHIVDV 86


>gi|254787698|ref|YP_003075127.1| ribonuclease, Rne/Rng family [Teredinibacter turnerae T7901]
 gi|237686341|gb|ACR13605.1| ribonuclease, Rne/Rng family [Teredinibacter turnerae T7901]
          Length = 493

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 127/422 (30%), Positives = 222/422 (52%), Gaps = 4/422 (0%)

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
           +V D+     ++  ++   +  I++ ++  Q +LVQ++K+    KGA ++T+LS++ RY 
Sbjct: 69  HVSDIAVDPAKNGDERGHAEADIRDFLREGQDILVQVIKDPISTKGARLSTHLSVSARYL 128

Query: 208 VLMPNTSKGETISRKITNPVDRKNL----KEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           V MPN+      +R   +    +      K  A   E   G G I+RT     ++ +++ 
Sbjct: 129 VYMPNSHHIGVSNRIEDDTERDRLRAIVEKLAAEYEEEYKGGGFIIRTVAEGASEEDLRA 188

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           D  ++ RLW ++ +    S AP ++YE+  L  R IRDL   +I ++ +   + + + + 
Sbjct: 189 DIPFVFRLWHDLADTIAKSRAPAIIYEDLPLYMRTIRDLMRSNIEKVRIDSRESFAKMEK 248

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           F K   P     +  Y    P+F   G+E ++      +V L S GY+II QTEA+ +ID
Sbjct: 249 FAKHYAPEIGGRIEHYPGERPLFDLYGVEDEIQRALDKKVVLKSGGYLIIEQTEAMTTID 308

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VN+G       +E+T  +TNLEA+  IARQLRLR+L G+I++DFIDM + ++ R V + L
Sbjct: 309 VNTGAFVGHRNLEETIFKTNLEASTAIARQLRLRNLGGIIIIDFIDMRDVEHKRQVHRTL 368

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           ++SL+KDRA+  +  +S  GL+EM+R+R R S+ +   + C  C G G ++S  ++   I
Sbjct: 369 EKSLEKDRAKTSITRVSELGLVEMTRKRTRESLGQMLCEPCPVCAGRGTLKSAETICYEI 428

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
            R +      Y     +V     V+  LL+Q+  ++ + EA     I   +      + +
Sbjct: 429 FREILREARAYDNERFLVLVSQPVIDRLLDQESDSVADLEAFINRPIQFQVESLYNQEQY 488

Query: 564 YI 565
            I
Sbjct: 489 DI 490



 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++     ETR  ++ +  ++E+  E    K   GNIY  +V RV P +QAAFVD
Sbjct: 1  MSEEILVNF-GPTETRAALVENGVLQEVYIERARTKGFVGNIYKGRVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  R GF+   +I  D
Sbjct: 60 IGQARAGFIHVSDIAVD 76


>gi|319776365|ref|YP_004138853.1| ribonuclease G [Haemophilus influenzae F3047]
 gi|319897008|ref|YP_004135203.1| ribonuclease g [Haemophilus influenzae F3031]
 gi|329123521|ref|ZP_08252084.1| ribonuclease G [Haemophilus aegyptius ATCC 11116]
 gi|317432512|emb|CBY80870.1| ribonuclease G [Haemophilus influenzae F3031]
 gi|317450956|emb|CBY87183.1| ribonuclease G [Haemophilus influenzae F3047]
 gi|327470337|gb|EGF15795.1| ribonuclease G [Haemophilus aegyptius ATCC 11116]
          Length = 491

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 122/414 (29%), Positives = 205/414 (49%), Gaps = 3/414 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                ++  +K  +   I E+++  Q ++VQ+VKE  G KGA +TT ++L  RY V MP 
Sbjct: 77  HTECVDENEQKQFKVKSISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRYLVFMPE 136

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +   +           G I+RTA    ++ E+++D E+L RLW
Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E          +Y E  L +R +RD    ++ +I +  +  + E K+F    MP  
Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           +  +  Y    PIF   G+E  + +     V L S GY+II QTEA+ +ID+N+G     
Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+  +    V + L ++L KDR 
Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEYRNRVLQSLCDALSKDRM 374

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +  GL+EM+R+R R S+       C  C G G +++  +V   I+R +     
Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVHH 434

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565
            +++   +V+    V  YL+N++   ++ E E   G  + V        + F +
Sbjct: 435 LFSSEQFVVYASPAVSEYLINEEYHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488


>gi|327479584|gb|AEA82894.1| cytoplasmic axial filament protein [Pseudomonas stutzeri DSM 4166]
          Length = 485

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 219/401 (54%), Gaps = 5/401 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP TS    IS +I +  +
Sbjct: 83  PINALVHEGQSLVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRTSHVG-ISLRIEDEAE 141

Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           R+ LK++        G+    G ILRTA     + EI  D  YL RLW+ +      + A
Sbjct: 142 RERLKQVVAECVAAEGIQEAGGFILRTAAEGAGRDEILMDIRYLRRLWEQIAGQIKTAAA 201

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P ++YE+ +L  R +RDL    I +I +   + +++   F+  LMP     +  Y    P
Sbjct: 202 PTVIYEDLSLAMRTLRDLVNPRIEKIRIDSRENFQKVSQFVGELMPELGDRLEHYPGERP 261

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   G+E ++    + +V L S GY+II+  EA+ +IDVN+G       +E+T  +TNL
Sbjct: 262 IFDLYGVEDEIQKALERKVMLKSGGYLIIDPAEAMTTIDVNTGAFVGHRTLEETIFKTNL 321

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           E+A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL
Sbjct: 322 ESATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGL 381

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R R S+ +   + C  C+G G +++  +V   I R +      Y A    V  +
Sbjct: 382 VQMTRKRTRESLEQVLCEPCMCCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLAN 441

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             V+  LL+++   + + EA  G SI   +    + + + +
Sbjct: 442 QKVIDRLLDEESGNVADLEAFIGRSIKFQVESMYSQEQYDV 482



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILMNIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|294668363|ref|ZP_06733466.1| hypothetical protein NEIELOOT_00275 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309681|gb|EFE50924.1| hypothetical protein NEIELOOT_00275 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 497

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 204/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+   +KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRQNPDETQRIEHMLFEGQTVLVQVIKDPINSKGARLSTQISLAGRFLVHLPQEEHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +         +   L   A  G I+RT+  +    E++ D +YL ++W N+R+ A
Sbjct: 149 QRIEDHEDRHNLRDRLQNLLPPDAAHGYIIRTSAETAGDAELQADIDYLTKVWANIRQQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               A  L+Y++  L  R +RD++  +  EI+V  ++ + + + F    +   A  ++ +
Sbjct: 209 KTCPAESLLYQDLPLSLRVLRDMFSNNTREILVDSKENFAKMQHFATQYVQGAAEKIKLF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
               P+F    +E +++   Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 TGERPLFETHNVEAEINRALQPRVNLNFGSYLIIEATEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM    +  +V ++L ++L  DR RV +   
Sbjct: 329 FKTNLEACHAIARELRLRNLGGIIIIDFIDMSSDVHREAVLQELAKALSFDRTRVTLNGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++     + C  C+G G +++  +V   I R +     ++     
Sbjct: 389 TSLGLVELTRKRTRENLSHVLCEPCPACQGRGRLKTPQTVCYEIQREIVRESRRFDVRQF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  +++ +      + F +
Sbjct: 449 RILASPEVIDLFLDEESQSLAMLIDFIGKPVSLAVENSYTQEQFDV 494


>gi|167031959|ref|YP_001667190.1| ribonuclease [Pseudomonas putida GB-1]
 gi|166858447|gb|ABY96854.1| ribonuclease, Rne/Rng family [Pseudomonas putida GB-1]
          Length = 485

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 217/401 (54%), Gaps = 5/401 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP +S    IS KI +  +
Sbjct: 83  NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141

Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           R+ LK++         +    G ILRTA       EI +D  YL RLW+ +        A
Sbjct: 142 RERLKQVVSDCMDSENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGTQIKTCGA 201

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    P
Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNL
Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA  IARQLRLR++ G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL
Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGL 381

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R R S+ +   + C  C+G G +++  ++   I R +      Y A    V  +
Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             VV  LL+++   + E EA  G +I   +    + + + +
Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHASEI 73


>gi|300727912|ref|ZP_07061290.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14]
 gi|299774754|gb|EFI71368.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14]
          Length = 523

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 145/565 (25%), Positives = 248/565 (43%), Gaps = 61/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D ++ E   ES                      QA+F  
Sbjct: 1   MTSELVIDA-QQKEISIALLEDKQLVEYQNESR---------------------QASF-S 37

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                  I  +  + L+   N    D     D   H        +S 
Sbjct: 38  VG-----------------NIYVAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           ++                 +     +                   ++  IQ V+K  Q +
Sbjct: 81  QKYVKQVESDNRKLYPFAKATTQPDLD------------------KEGSIQNVLKAGQDV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +T  LS AGRY VL+P   K    S+        + LK++   ++
Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRYLVLIPFGDKVSVSSKIKKGEERAR-LKQLIHSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L++ W++           P L+YEE       +
Sbjct: 182 -PNNCGVIVRTVAEGKRVAELDAEMKILVKRWEDAISKVQKTQKRPQLIYEETGRAVAML 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E    E K+++ L+ P    IV+ Y    PIF    I  Q+ S  
Sbjct: 241 RDLFNPTYENIYVNDENVMNEVKNYVSLIAPEKTNIVKLYSGKVPIFDNFNITKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              V      Y+II  TEAL  +DVNSG  TRE   E  AL  NL AA+E+ARQLRLRD+
Sbjct: 301 GKTVNYKHGAYLIIEHTEALHVVDVNSGNRTREKGQEANALDVNLGAADELARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM   ++ + + +++ ++++KDRA+  +  +S FGL++++RQR+R ++  +
Sbjct: 361 GGIIVVDFIDMNLAEDRQLLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVRPAIDVN 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
             + C  C G G I+S      ++ R ++  + +       ++ +  V  ++     +  
Sbjct: 421 VEETCPSCFGTGKIKSSILFTDTLERKIDRLVNKIGVKKFYLYVNPYVAAFINKGFISLK 480

Query: 540 VEYEARFGVSINVVIGIELADKLFY 564
            +++ ++G  +++V   +++   + 
Sbjct: 481 RKWQFKYGFGVHIVPSQKMSFLQYE 505


>gi|149369656|ref|ZP_01889508.1| ribonuclease G [unidentified eubacterium SCB49]
 gi|149357083|gb|EDM45638.1| ribonuclease G [unidentified eubacterium SCB49]
          Length = 513

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 131/567 (23%), Positives = 239/567 (42%), Gaps = 63/567 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++I  S  +E    + +D R+ EL  E E  K   G+IYLAK+ +  P L AAFV+
Sbjct: 1   MNSELII-RSSSQEVDFALFKDGRLIELHKEEESNKFSVGDIYLAKIRKTVPGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P            +       +  S     D +  D  +  +   
Sbjct: 60  VGYEKDAFLHYHDLGP-----------KIGSLLKFVKRVSTGKLKDYSLKDFPLEKEIEK 108

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  S ++    I+             +             +Y +     +R  +
Sbjct: 109 NGGINDAIKSNQSILVQIVKEPISTKGPRISSE--------LSIAGRYIVLVPFSDRISI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +E  ++   + T +   G                                    
Sbjct: 161 SQKIDSKEEKDRLKRLITSIRPKGF----------------------------------- 185

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RT    +   E+ +D + L+  W+ + +    +  P  V  E +     +R
Sbjct: 186 -----GVIIRTVAEGKKVAELDKDLQNLIDRWNAMCKKLHGAHHPSKVLSELDRGASILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I +  E  Y + KD+++ + P    IV+ ++   PIF + G++ Q+ +   
Sbjct: 241 DVFNDSFTNICIDDETLYLQIKDYVQSIAPDKENIVKLHDSNVPIFEKFGVDRQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V+     Y++I  TEA+  IDVNSG RS +    EDTAL+ N+ AA E+ARQLRLRD+
Sbjct: 301 RSVSSTKGTYLVIEHTEAMHVIDVNSGNRSNKSKNQEDTALEVNIIAATEVARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM + KN +++   ++E +K DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMSQAKNRKALYDHMREEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +       +G I +  +V   I   V+  L +     + ++ H  +  +L     +  
Sbjct: 421 TREEAPG-TESGEIEAPITVVNRITEDVKRILSKDYNK-VTLNAHPFIAAFLTKGFPSMR 478

Query: 540 VEYEARFGVSINVVIGIELADKLFYIE 566
            ++       + V          ++ +
Sbjct: 479 HKWFMEHKKWVKVQPRDAYTYLEYHFQ 505


>gi|325143877|gb|EGC66192.1| ribonuclease G [Neisseria meningitidis M01-240013]
 gi|325200855|gb|ADY96310.1| ribonuclease G [Neisseria meningitidis H44/76]
          Length = 496

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 88  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 147

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 148 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 207

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 208 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 267

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 268 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 327

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 328 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 387

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 388 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 447

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 448 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 493



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E   +  + GNIYL  V RV P +Q+AF+D G  
Sbjct: 17 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 75

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 76 RAAFLHIVDV 85


>gi|226943397|ref|YP_002798470.1| Ribonuclease E/G [Azotobacter vinelandii DJ]
 gi|226718324|gb|ACO77495.1| Ribonuclease E/G [Azotobacter vinelandii DJ]
          Length = 485

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 127/400 (31%), Positives = 211/400 (52%), Gaps = 3/400 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G+KGA +TT+LS+  RY V MP T       +       
Sbjct: 83  NIAALVHEGQSLVVQVTKDPIGSKGARLTTHLSIPSRYLVYMPRTRHVGISLKIEEEAER 142

Query: 229 RKNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
            +  K   +      +    G ILRTA       EI  D  YL RLWD +      + AP
Sbjct: 143 ERLKKVVADCVASEGIEHEGGFILRTAAEGAGADEILADIRYLRRLWDQIAGQIQTASAP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+ +L  R +RDL    I +I +   + +++   F+  LMP     +  Y    PI
Sbjct: 203 AVIYEDLSLALRTLRDLVSPRIEKIRIDSRETFQKVLQFVSELMPEITDHLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY+II+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQRALERKVMLKSGGYLIIDPAEAMTTIDVNTGAFVGHRTLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AAIAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITVLGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C+ C+G G +++  ++   I R +      Y A   +V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCSCCQGRGKLKTAETICYEIFREILREARAYQAEGYLVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + + EA  G  I   +    + + + +
Sbjct: 443 KVVDRLLDEESGNVADLEAFIGRPIKFQVEGTYSQEQYDV 482



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  +V RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHAAEI 73


>gi|225077307|ref|ZP_03720506.1| hypothetical protein NEIFLAOT_02366 [Neisseria flavescens
           NRL30031/H210]
 gi|224951354|gb|EEG32563.1| hypothetical protein NEIFLAOT_02366 [Neisseria flavescens
           NRL30031/H210]
          Length = 521

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 203/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 113 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 172

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + +   L   A  G I+RT   + +  +++ D  YL ++W+++++ A
Sbjct: 173 QRIEDDAERSSLRERLNNLLPENACHGYIIRTNAENASDNQLQSDINYLTKVWEHIQKQA 232

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD++  D  +I+V   + +R    F +  +      +  +
Sbjct: 233 KIQPPETLLYQDLPLSLRVLRDMFSLDTHKILVDSTENHRRMTQFAEQYVQGALGRIELF 292

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 293 KGERPLFETHNIEQEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 352

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 353 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEVHREAVLQELAKALSFDRTRVTLNGF 412

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y     
Sbjct: 413 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAF 472

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 473 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 518


>gi|262378962|ref|ZP_06072119.1| ribonuclease G [Acinetobacter radioresistens SH164]
 gi|262300247|gb|EEY88159.1| ribonuclease G [Acinetobacter radioresistens SH164]
          Length = 488

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 122/412 (29%), Positives = 215/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + +  + +    + E+++  QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 75  NDMIWPRNQPTPNVFELLQPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPFGNHI 134

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ +   ++        VI+RTA     + +I +D  YL +LW+ 
Sbjct: 135 GVSQRIESEEERDR-LRSLIEKIQQQHDLPGSVIVRTAADGVDEADIAQDMAYLAKLWEY 193

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++     +  P L++EE  L +R IRDL  ++ ++I +   + Y +  +F++  +P    
Sbjct: 194 IQRKQRATTVPSLIFEELPLPQRVIRDLANEETAKIYIDSREIYTKLSEFIEEFVPGMQD 253

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  L    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 254 RLIHYPGERPLFDLYNVEEDLQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + I RQLRLR+L G+I++DFIDM+E  +   V  + ++ L++D A+ 
Sbjct: 314 LEDTVFKTNMEATQVIVRQLRLRNLGGIIIIDFIDMQEATHRNEVMHQFEKMLERDHAKT 373

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           ++  +S  GL+EM+R+R R S+     + C  C+G GY+++  +V   I R +  Y   +
Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCEACPTCQGRGYVKTAETVCYEIFREIMRYARAF 433

Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 434 ESQSGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 485



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M++++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 5  MSDELLINVT-PMECRVALVENGTVNELFVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 64 IGLSRTAFLHINDM 77


>gi|325273351|ref|ZP_08139617.1| ribonuclease G [Pseudomonas sp. TJI-51]
 gi|324101514|gb|EGB99094.1| ribonuclease G [Pseudomonas sp. TJI-51]
          Length = 485

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 124/400 (31%), Positives = 208/400 (52%), Gaps = 3/400 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP +S      +       
Sbjct: 83  NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVGISLKIEDEAER 142

Query: 229 RKNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
            +  +          +    G ILRTA       EI +D  YL RLW+ +        AP
Sbjct: 143 ERLKQVVSNCMESENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGSQIKTCGAP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTMQFVSELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR++ G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNIGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C+G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E EA  G +I   +    + + + +
Sbjct: 443 KVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482


>gi|330955352|gb|EGH55612.1| ribonuclease E [Pseudomonas syringae Cit 7]
          Length = 424

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 149/342 (43%), Positives = 213/342 (62%)

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           M+LW  ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +
Sbjct: 1   MQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQV 60

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           MP YA  ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R
Sbjct: 61  MPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSAR 120

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           +T+   IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM   KN R+VE+K++ESL+
Sbjct: 121 ATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLE 180

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
            DRARVQ+G IS FGLLEMSRQR+R S+ ES+  VC  C G G IR   S++L+ILR +E
Sbjct: 181 ADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIE 240

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           E  L+     +       V  +LLN+KR +I + E R    I ++   +L    F +++ 
Sbjct: 241 EEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRL 300

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
                  ++       + A +  + I  +      L   ++ 
Sbjct: 301 RDDSPEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAA 342


>gi|26987673|ref|NP_743098.1| ribonuclease, Rne/Rng family [Pseudomonas putida KT2440]
 gi|24982357|gb|AAN66562.1|AE016284_10 cytoplasmic axial filament protein [Pseudomonas putida KT2440]
          Length = 485

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 216/401 (53%), Gaps = 5/401 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP +S    IS KI +  +
Sbjct: 83  NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141

Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           R+ LK++         +    G ILRTA       EI +D  YL RLW+ +        A
Sbjct: 142 RERLKQVVSDCMDGENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGTQIKTCGA 201

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    P
Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNL
Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA  IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+  +  I+  GL
Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGL 381

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R R S+ +   + C  C+G G +++  ++   I R +      Y A    V  +
Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             VV  LL+++   + E EA  G +I   +    + + + +
Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHASEI 73


>gi|121634292|ref|YP_974537.1| hypothetical protein NMC0430 [Neisseria meningitidis FAM18]
 gi|120865998|emb|CAM09735.1| hypothetical protein NMC0430 [Neisseria meningitidis FAM18]
          Length = 497

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 205/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E   +  + GNIYL  V RV P +Q+AF+D    
Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIDLE 76

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 77 RAAFLHIVDV 86


>gi|119944882|ref|YP_942562.1| ribonuclease G [Psychromonas ingrahamii 37]
 gi|119863486|gb|ABM02963.1| RNAse G [Psychromonas ingrahamii 37]
          Length = 491

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 121/412 (29%), Positives = 200/412 (48%), Gaps = 2/412 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                  K   +   I ++++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP T 
Sbjct: 78  ECVAKNEKAKFKVADISQLVRPGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGTG 137

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 R  +     + LK IA+G  V    G I+RTA     + E+  D  +L+R+W  
Sbjct: 138 HVGVSQRIESAQERER-LKVIAQGCCVNDLGGFIIRTAADGAPEKELINDAAFLLRVWRK 196

Query: 275 V-RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           V       +    L+Y +  L  R +RD   ++I  + +     +   + F    +P   
Sbjct: 197 VLTRRKRTASKNRLLYRDLGLAFRILRDFVGEEIDRVRIDSRLNFSLIQKFTHDFVPELE 256

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G      
Sbjct: 257 DKIECYRGKSPIFDLFDVENEVQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 316

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            +E+T   TN+EA + IARQLRLR+L G+I++DFIDM+  ++ R V   L+++L KDR +
Sbjct: 317 NLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMQSVEHKRRVFNSLEQALSKDRVK 376

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
             +   S  GL+EM+R+R + S+      VC  C G GYI++  +V   +LR +      
Sbjct: 377 TNINDFSPLGLIEMTRKRTQESLEHIFCGVCEQCSGRGYIKTVETVCYEVLREILRVNRA 436

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           Y A   +V+T   V   L   +   + E        + +        + F +
Sbjct: 437 YDADRFVVYTSPKVAEALTGDESHNLAELVLFMEKPVKINAEPLYGQEQFDV 488



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV ++    ++EL  E +  K I GNIY  KV+RV   +QAAFVD
Sbjct: 1  MSVELLMNIT-PTETRVALVEGGVLQELHIERQATKGIVGNIYKGKVSRVLAGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  +  FL   +I P
Sbjct: 60 IGLEKAAFLHASDIVP 75


>gi|325982227|ref|YP_004294629.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
 gi|325531746|gb|ADZ26467.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
          Length = 484

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 119/410 (29%), Positives = 213/410 (51%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
              D   +      I++++     ++VQ++K+    KGA ++T +SLAGR  V +P  S 
Sbjct: 72  DIRDPKPEGDVMKPIEKLLYEGSSIVVQVIKDAISTKGARLSTQISLAGRLLVYLPQESH 131

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R   +       +++ + L      G I+RT   +  + +++ D EYL RLW ++
Sbjct: 132 IGISQRIEDDSERELLREKLQQILPEDEAGGYIIRTMAETADENDLRADLEYLHRLWRDI 191

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           ++ +    AP L+Y++ +L  R +RD   +D + I+V   + Y++   F +  M   A  
Sbjct: 192 QQKSATISAPVLLYQDLDLGHRVLRDFIDEDTARILVDSRENYQKLVKFAQSYMTCIAER 251

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F    +E +++      V L S GY+II+QTEAL ++DVN+G        
Sbjct: 252 ITLYTGDRPLFDLYAVEEEIERSLAKRVNLKSGGYLIIDQTEALTTMDVNTGGFIGVRNF 311

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLR+R+L G+I++DFIDME   +  +V  +  ++L KDR R+ 
Sbjct: 312 DDTVFKTNLEAAQVIARQLRMRNLGGIIIIDFIDMESDDHKNAVLTEFNKALSKDRTRIT 371

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   S  GL+EM+R+R R S+     + C  C+G G +R+  ++   ILR +     Q+ 
Sbjct: 372 VNGFSTLGLVEMTRKRTRESLAHVLCETCPTCQGRGEVRTAQTICYEILRELLRESRQFD 431

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A+   +     V+   L+++  ++ +        I++ I    + + + +
Sbjct: 432 ANEFRILASQQVIDLFLDEESQSLAQLGDFIAKPISLQIEESYSQEQYDV 481


>gi|261867590|ref|YP_003255512.1| ribonuclease G [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412922|gb|ACX82293.1| ribonuclease, Rne/Rng family [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 491

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 132/485 (27%), Positives = 230/485 (47%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E        G++       +      A      E+ + + A
Sbjct: 12  PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I +++   Q ++VQ+VK+  G KGA +TT ++
Sbjct: 72  SDIVSHTECVDENEQKQFV------VKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     + LKE+A  L    G G I+RTA    +++++
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERAR-LKELALPLCDELG-GFIIRTAAEGASELDL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++D E+L RLW  V E         ++Y E  L +R +RD     +  I +     + E 
Sbjct: 184 QQDAEFLKRLWRKVLERRAKYPTRSMLYGELALTQRILRDFIGAKLDRIHIDSRLCFNEV 243

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K F +  +P+    +  Y    P+F    +E  + +     V L S GY+II QTEA+ +
Sbjct: 244 KQFTEEFIPNLTDKLILYSGNQPLFDVYSVETGIHNALDKRVNLKSGGYLIIEQTEAMTT 303

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           ID+N+G       +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+++++   V +
Sbjct: 304 IDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQKEEHRTRVLE 363

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+E+L  D  +  V   +  GL+EM+R+R R S+       C  C+G G +++  +V  
Sbjct: 364 SLQEALAGDPVKTNVNGFTQLGLVEMTRKRTRESLERVLCGDCPACQGRGRVKTVETVCY 423

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560
            I+R +      + +   +V+    V  YL+N++    + E E   G  I V   +    
Sbjct: 424 EIMREIIRVHHVFASEQFVVYASHAVADYLINEEFHGLLAELEVFIGKQIQVKTEVFYTQ 483

Query: 561 KLFYI 565
           + F +
Sbjct: 484 EQFDV 488



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETR+ ++    ++E+  E + K+ I GNIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|255065070|ref|ZP_05316925.1| cytoplasmic axial filament protein [Neisseria sicca ATCC 29256]
 gi|255050491|gb|EET45955.1| cytoplasmic axial filament protein [Neisseria sicca ATCC 29256]
          Length = 497

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 203/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + +   L   A  G I+RT   + T  ++  D  YL ++W++++E A
Sbjct: 149 QRIEDDAERHSLRERLTNLLPEDACHGYIIRTNAENATDEQLLSDIHYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD++  D  +I+V   + +R    F +  +      +  +
Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSLDTQKILVDSTENHRRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  ++   I R +     +Y   + 
Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTICYEIQREIVREARRYDVQSF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          L++ +  +ETRV VL +N + EL  E      + GNIYL  V RV P +Q+AF+D G  R
Sbjct: 19 LVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLER 77

Query: 66 HGFLPFLEI-----HPDYYQ 80
            FL  +++     +PD  Q
Sbjct: 78 AAFLHIVDVLEQRRNPDETQ 97


>gi|29840567|ref|NP_829673.1| ribonuclease G [Chlamydophila caviae GPIC]
 gi|29834917|gb|AAP05551.1| ribonuclease G [Chlamydophila caviae GPIC]
          Length = 510

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 141/425 (33%), Positives = 234/425 (55%), Gaps = 3/425 (0%)

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            N                     K +  I+E++K    +LVQ+VKE  G KGA +T+ +S
Sbjct: 75  ENSKKFEQMFDMDFDVLPKEDSEKPEAPIEELLKLDSPVLVQVVKEPIGTKGARLTSNIS 134

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           + GRY VL+PN+     +SRKI +P  R  LK++ R  E+P  MG+I RTA    +   +
Sbjct: 135 IPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFEMPQDMGLICRTASVLASTDAL 193

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             +   L+  W  + E   ++  P L+YEE +++K+A+     K+   +++     Y++ 
Sbjct: 194 INEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYKRLLIDDYSTYQKC 253

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K  +K   P  +  +  Y D  P+F R  IE ++D   + ++ L S GY+  ++TEA+ +
Sbjct: 254 KRMLKKYSPDSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSGGYLFFDKTEAMHT 313

Query: 382 IDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++ GL+++DFIDM+ +KN R V 
Sbjct: 314 IDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVL 373

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++LKE +K D AR  + ++S FGL+EM+RQR R S++++    C YC G   I++  SV 
Sbjct: 374 ERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPYCSGNAIIKTPESVV 433

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELA 559
           + I R +++ +      ++ +  H ++  Y+  +K    ++         + +     L 
Sbjct: 434 IEIERDLKKVINHKEHTHLCLVVHPEIAGYMKQEKDDDELIRLAKHLKAKLQINTSDSLH 493

Query: 560 DKLFY 564
              + 
Sbjct: 494 LNHYQ 498


>gi|313497306|gb|ADR58672.1| CafA [Pseudomonas putida BIRD-1]
          Length = 485

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 5/401 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP +S    IS KI +  +
Sbjct: 83  NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141

Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           R  LK++         +    G ILRTA       EI +D  YL RLW+ +        A
Sbjct: 142 RDRLKQVVSDCMDGENIKDAGGFILRTAAEGARAEEIVQDIRYLRRLWEQIGTQIKTCGA 201

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    P
Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNL
Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA  IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+  +  I+  GL
Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGL 381

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R R S+ +   + C  C+G G +++  ++   I R +      Y A    V  +
Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             VV  LL+++   + E EA  G +I   +    + + + +
Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHASEI 73


>gi|148546220|ref|YP_001266322.1| ribonuclease [Pseudomonas putida F1]
 gi|148510278|gb|ABQ77138.1| RNAse G [Pseudomonas putida F1]
          Length = 485

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 216/401 (53%), Gaps = 5/401 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G KGA +TT LS+  RY V MP +S    IS KI +  +
Sbjct: 83  NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141

Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           R+ LK++         +    G ILRTA       EI +D  YL RLW+ +        A
Sbjct: 142 RERLKQVVSDCMDSENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGTQIKTCGA 201

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    P
Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNL
Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA  IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+  +  I+  GL
Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGL 381

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R R S+ +   + C  C+G G +++  ++   I R +      Y A    V  +
Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             VV  LL+++   + E EA  G +I   +    + + + +
Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHASEI 73


>gi|237654476|ref|YP_002890790.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
 gi|237625723|gb|ACR02413.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
          Length = 484

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 113/410 (27%), Positives = 199/410 (48%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                 +  +    I++++   Q L+VQ++K+  G KGA ++T +SLAGR  V +P    
Sbjct: 72  DIWSDRQNGEGARPIEKILTEGQSLMVQVLKDPIGTKGARLSTQVSLAGRLLVYLPQEKH 131

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R             +   +      G I+RT   S T  E+  D  YL +LW  +
Sbjct: 132 IGISQRIEDEAGREALRSRLVALVPEDEPGGFIVRTMAESATDAELAADIAYLRKLWREI 191

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
               +    P L++E+  L +R +RDL   + S I V   + +++   F     P    +
Sbjct: 192 SGSTVGLFPPKLLHEDLGLGQRTLRDLVTDETSRIRVDSRENFQKLTAFAAEYTPQVLPL 251

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F    +E ++       V L S GY+II+QTEA+ ++DVN+G        
Sbjct: 252 LEHYSGDRPLFELYSVEEEIQKALARRVDLKSGGYLIIDQTEAMTTVDVNTGGFVGARNF 311

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEA++ IARQLRLR+L G+I++DFIDME  ++   V ++ +++L +D  ++ 
Sbjct: 312 DDTIFKTNLEASQAIARQLRLRNLGGIIIIDFIDMENVEHREMVLEEFRKALSRDHTKMS 371

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           +   +  GL+EM+R+R R S+     + C  C G G +++  +V   ILR +     Q+ 
Sbjct: 372 INGFTALGLVEMTRKRTRESLAHLLCEPCPTCSGRGEVKTARTVCYEILRELLREARQFN 431

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A    V    +V+   L+++  ++       G  +++        + + I
Sbjct: 432 AREFRVLAAPNVIDLFLDEESQSLAMLSDFIGKKVSLHAEGSYTQEQYDI 481



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ + LI+ +  +ETRV ++    V+EL  E    + I GN+YL KV RV P +Q+AF+D
Sbjct: 1  MSIEFLINFT-PQETRVAIVEQGVVQELHVERTASRGIVGNLYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  R  FL   +I  D
Sbjct: 60 IGLERTAFLHVADIWSD 76


>gi|152978585|ref|YP_001344214.1| ribonuclease G [Actinobacillus succinogenes 130Z]
 gi|150840308|gb|ABR74279.1| ribonuclease, Rne/Rng family [Actinobacillus succinogenes 130Z]
          Length = 492

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 130/486 (26%), Positives = 230/486 (47%), Gaps = 10/486 (2%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL+  + + +   E  A     G++       +      A      ++ + + A
Sbjct: 12  PNETRVALMDNAELKEVHIERQAKRGIVGNIYKGKVTRVLPGMQSAFVDIGLDKAAFLHA 71

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +    + V         I E+++  Q L+VQ+VK+    KGA +TT ++
Sbjct: 72  SDIVSYTECVDENEQKQFV------VKDIVELVREGQDLVVQVVKDPISTKGARLTTDIT 125

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP  S      R  +     +   +           G I+RTA    T+ E+
Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERAR--LKALVEPYCDELGGYIIRTAAEGVTEAEL 183

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           K+D ++L R+W  V E         ++Y E  L +R +RD   + I +I +  +  + E 
Sbjct: 184 KQDADFLKRVWLKVLERKRKYPTRSMIYGELALAQRVLRDFIGQGIEKIRIDSKLCFNEV 243

Query: 322 KDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           K+F +  MP    ++V    +  P+F   G+E  +++     V L S GY+II QTEA+ 
Sbjct: 244 KEFTEEFMPELTDKLVLYSGNNQPLFDVYGVESAINAALNKRVNLKSGGYLIIEQTEAMT 303

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +ID+N+G       +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+   +   V 
Sbjct: 304 TIDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDDHRNRVI 363

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           + L+E+L +DR +  V   +  GL+EM+R+R R S+       C  C+G G++++  +V 
Sbjct: 364 RSLEEALTRDRVKTNVNGFTQLGLVEMTRKRTRESLEHILCSDCPACQGRGHVKTVETVC 423

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELA 559
             I+R +      + +    V+    V  YL+N++    + E E   G  + +   +   
Sbjct: 424 YEIMREIIRVHHLFASEIFTVYASPAVAEYLINEESHGLLAETEVFIGKRVQIKSEVFYH 483

Query: 560 DKLFYI 565
            + F +
Sbjct: 484 QEQFDV 489


>gi|229588411|ref|YP_002870530.1| ribonuclease G [Pseudomonas fluorescens SBW25]
 gi|229360277|emb|CAY47134.1| ribonuclease G [Pseudomonas fluorescens SBW25]
          Length = 485

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD +        AP
Sbjct: 143 ERLKKVVSDCVAAEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIDAQIKTISAP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + ++    F+  LMP  A  +  Y    PI
Sbjct: 203 SVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQRTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C+ C+G G +++  +V   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E   G +I   +    + + + +
Sbjct: 443 KVVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 482


>gi|255530042|ref|YP_003090414.1| ribonuclease, Rne/Rng family [Pedobacter heparinus DSM 2366]
 gi|255343026|gb|ACU02352.1| ribonuclease, Rne/Rng family [Pedobacter heparinus DSM 2366]
          Length = 516

 Score =  247 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 144/575 (25%), Positives = 247/575 (42%), Gaps = 61/575 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++ID+S    T + ++ D ++ EL       K+   N Y                 
Sbjct: 1   MVKELIIDSSPSGVT-IALVEDKQLVEL------HKEQINNNY----------------- 36

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                       +I+                               +  G      D   
Sbjct: 37  ---------AVGDIY-------------------------LGRIKKIMPGLNAAFVDVGY 62

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+ A +  F    + +S+I       +   +        +     +   I EV+    +L
Sbjct: 63  EKDAFLHYFDLGPQVQSLIKLTKIKRNGSVNGTLLDNFKLEGDINKAGKISEVVSKNLVL 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            VQI KE    KG  +++ LS+AGRY VL+P  S   +IS+KI +  +R  LK+I   ++
Sbjct: 123 PVQIAKEPISTKGPRLSSDLSIAGRYIVLVPF-SNVISISKKIKSNTERNRLKKIIESIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RT    +   E+++D    +  W+N  +   ++     V+ E +     IR
Sbjct: 182 PK-NFGVIIRTVSEGKGVAELQKDLLDSVAKWENFIKKLPDAEPSKRVWGEMDRTSTLIR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   D + + VS    + + + ++  + P   +IV+ Y    PIF   GIE Q+ +   
Sbjct: 241 DILSTDFTNVYVSDNNLFEDIRSYVHEISPEMEKIVKLYRHKEPIFEHFGIEKQIKNAFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419
             V L    Y+++  TEAL  IDVNSG  T      E+ ALQ N EAA+EIARQLRLRD+
Sbjct: 301 KTVNLAGGAYLVVEHTEALHVIDVNSGNRTASKENQEENALQVNKEAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G++V+DFIDM +  N + +   L++ ++ DRA+  +   S FGL++++RQR+R  +   
Sbjct: 361 GGIVVIDFIDMHKPANRKMLFDHLRDLMQLDRAKHTILPPSKFGLVQITRQRVRPEMNIV 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T++ C  C G G I++   +   I  ++   L +    NI +  H  +  Y+     +  
Sbjct: 421 TSEKCPACDGTGEIKASIVLMDDIENNLTYILQEQNEKNITLCVHPYIEAYIKKGFISLQ 480

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
            ++  +FG  I +          F+       +  
Sbjct: 481 WKWFFKFGQRIKIKAVPSYNLTEFHFISSKDEEIK 515


>gi|114564886|ref|YP_752400.1| ribonuclease G [Shewanella frigidimarina NCIMB 400]
 gi|114336179|gb|ABI73561.1| RNAse G [Shewanella frigidimarina NCIMB 400]
          Length = 496

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 123/396 (31%), Positives = 196/396 (49%), Gaps = 3/396 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP +S      R       +
Sbjct: 101 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIELEDERQ 160

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +   +      V    G I+RTA  +  + E+ +D  +L R+W  V E         L+Y
Sbjct: 161 R--LKNITLPYVDDDGGFIIRTAAENVGEDELAQDAAFLRRVWAKVSERR-KRKGVTLLY 217

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++  L  R IRD    ++  I V   + Y E + F++  MP  A  +  Y  P PIF   
Sbjct: 218 QDLALPVRIIRDFVGTELDHIQVDSRRTYAELQQFVREFMPEIADKIEHYAGPAPIFELY 277

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E ++      +V L S GY+II+QTEA+ ++D+N+G       +E+T   TNLEA + 
Sbjct: 278 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 337

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM  K++   V + L  +L  DR +  V   S  GL+EM+R
Sbjct: 338 IARQLRLRNLGGIIIIDFIDMLSKEHQARVLESLNAALALDRVKTSVSGFSGLGLVEMTR 397

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+       C  CKG G +++  +V+  I R +      Y A   +++    V +
Sbjct: 398 KRTRESLEHVVCGECPSCKGTGTMKTIETVSYEIFREIIRLDRAYKADEFLLYCSPAVYM 457

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +   + E E   G  I +          + +
Sbjct: 458 SFSGDESHLLAELEVYIGKRIRLQNEPLYIQSKYDV 493


>gi|325204740|gb|ADZ00194.1| ribonuclease G [Neisseria meningitidis M01-240355]
          Length = 497

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 206/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + + + L   A  G I+RT   + T  +++ D +YL ++W++++E A
Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD+   D  +I+V     +     F +  +      +  +
Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    +E ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A + 
Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +   S+V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAASNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          +L++ +  +ETRV VL +N + EL  E   +  + GNIYL  V RV P +Q+AF+D G  
Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76

Query: 65 RHGFLPFLEI 74
          R  FL  +++
Sbjct: 77 RAAFLHIVDV 86


>gi|300703517|ref|YP_003745119.1| ribonuclease g (RNAse g) [Ralstonia solanacearum CFBP2957]
 gi|299071180|emb|CBJ42496.1| ribonuclease G (RNase G) [Ralstonia solanacearum CFBP2957]
          Length = 489

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 1/412 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              +           I++ +   Q L VQ++K+  G KGA ++T +S+AGR  V +P   
Sbjct: 75  HPRDAKDAPPTPHVAIEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLPQDP 134

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 +           + +   +      G I+RT     T  E+  D  YL ++W  
Sbjct: 135 HIGISQKIGNETDREALRQRVTGMVPADERGGFIVRTIAEESTDEELANDVAYLRKIWAT 194

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +R  A    AP ++Y++ NL +R +RD    D   I V   + Y++  +F +   P+   
Sbjct: 195 IRHNATTLPAPSILYQDLNLAQRVLRDFVTDDTRSIQVDSRENYQKLVEFAQEYTPAVVE 254

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    IE +++      V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 255 RLTHYTGERPIFDLYNIEAEVERALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            +DT  +TNLEAA  IARQLRLR+L G+I++DFIDME  ++  +V  +L+ +L +DR R+
Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMESTEHRDAVLAELRRALARDRTRI 374

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            V + S  GL+EM+R+R R S+     + C  C+G G +++  +V   ILR +     Q+
Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI-ELADKLFYI 565
                 +     V+   L ++   +       G  I++ +     + + + I
Sbjct: 435 NPREFRILASQSVIDLFLEEESQHLAMLGDFIGKPISLQVESAAASQEQYDI 486



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+  +L++ +  +ETRV +++   V+EL  E    + + GNIYL KV RV P +Q+AF+D
Sbjct: 1  MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59

Query: 61 YGGNRHGFLPFLEI-HP 76
           G  R  FL   +I HP
Sbjct: 60 IGLERAAFLHVADIWHP 76


>gi|46581458|ref|YP_012266.1| ribonuclease [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450880|gb|AAS97526.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235111|gb|ADP87965.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris RCH1]
          Length = 489

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 159/419 (37%), Positives = 241/419 (57%), Gaps = 4/419 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +  +    +       P K K+   +Q+V+K  Q +LVQ+VKE  GNKGA +T+
Sbjct: 69  AEKNGFLQIDEVHPEYYISPHDPTKGKKYPLMQKVLKAGQEVLVQVVKEPTGNKGAFLTS 128

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSL GR+ VL P   +   +SRK+ +  +R  L+E+  GL    G+GVI+RT  A  +K
Sbjct: 129 YLSLPGRFLVLTPGREQIG-VSRKVEDDEERSRLREMLEGLSAGPGLGVIVRTVSAGTSK 187

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             ++RD ++L RLW +VR+       P  +Y+E +L  R++RD    D+SE+ V      
Sbjct: 188 TTLQRDLQFLKRLWKDVRKKGTTEQTPCQIYQEPDLATRSVRDYLTDDVSEVWVDDAATA 247

Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
              ++F+ L+ P  A +V+ + +    ++ R GI  QLD ++  EV LPS G ++ +QTE
Sbjct: 248 ELIREFVTLVFPRKASLVKLHTDPERTLWERFGIRKQLDQIYSREVILPSGGRLVFDQTE 307

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL++ID+NSG+   +   E  AL+TN EAAE IA+QLRLRD+ G +V+DFI+M +  + R
Sbjct: 308 ALMAIDINSGKIAGKTNFESMALKTNTEAAESIAQQLRLRDIGGQVVIDFIEMRDHNHWR 367

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK L+ ++K DRAR  VG +S FGLL++ RQR  SS L  T + C  C+G+G  R+  
Sbjct: 368 EVEKTLRNAMKGDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCRGSGLRRNME 427

Query: 498 SVALSILRSVEEYLLQYTAHNIIV--HTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             +L  LR +   L        +    T  ++  YLLN KR  ++E E RF + + V  
Sbjct: 428 WQSLQALRELHRQLRALPQGQCVHVFETSPELAFYLLNHKRERLLELERRFNLRLEVRP 486



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 45/80 (56%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KM I     E+  V +  D  V E   E  H+ + KGNIY   +  ++ +LQAAFV+YG
Sbjct: 9  RKMYISVLPGEQVEVALSEDGAVTEYYVEMLHQAKTKGNIYKGVINNIDTNLQAAFVNYG 68

Query: 63 GNRHGFLPFLEIHPDYYQIP 82
            ++GFL   E+HP+YY  P
Sbjct: 69 AEKNGFLQIDEVHPEYYISP 88


>gi|332292028|ref|YP_004430637.1| ribonuclease, Rne/Rng family [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170114|gb|AEE19369.1| ribonuclease, Rne/Rng family [Krokinobacter diaphorus 4H-3-7-5]
          Length = 516

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 133/564 (23%), Positives = 231/564 (40%), Gaps = 63/564 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S        +L+D ++ EL  E +  K   G+IY+A V +    L AAFV+
Sbjct: 1   MNKELII-RSSSSVVDFALLKDGKLIELHKEEDKNKFNVGDIYIANVRKTVSGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P   ++P                  +     VT G +   +  + 
Sbjct: 60  VGYEKDAFLHYHDLGP---KLPT----------------LQKYIKSVTTGKLKDYSLQNF 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                I    +  E      +    ++       G           +Y +     +R  +
Sbjct: 101 TFEKDIDKNGKIAEVLKSKQSVLVQIAKEPISTKGPRISSELSIAGRYIVLVPFSDRISI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +E   +   + T +   G                                    
Sbjct: 161 SQKIESKEEKARLKRLVTSIRPKGF----------------------------------- 185

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RT        E+ +D + L+  W  + +   N+  P  V  E N     +R
Sbjct: 186 -----GVIVRTVAQGVKVAELDKDLQNLVDKWTTMSKKIPNAHHPSKVLGEMNRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I V  E  Y + KD++  + P    IV+ Y +  PIF + GIE Q+ +   
Sbjct: 241 DIFNDSFTSITVDDETLYYQIKDYLSEIAPHKENIVKLYNNQLPIFEKFGIERQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEAL  +DVNSG RS +    EDTAL+ N+ AA EIARQL LRD+
Sbjct: 301 QTVSMSRGAYLVIEHTEALHVVDVNSGNRSNKAKSQEDTALEVNMIAASEIARQLSLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IV+DFIDM + ++ R +   LK+ +K DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVIDFIDMGKAEHRRQLFNHLKDEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +      G+  I +   +   +   +   L +  A  + +H H  V  Y+     +  
Sbjct: 421 TREENPN-GGSNEIEAPIVIVEKLQGQLNRIL-KSGAKKVTLHAHPFVAAYITKGFPSIR 478

Query: 540 VEYEARFGVSINVVIGIELADKLF 563
            ++       + V+         +
Sbjct: 479 SKWFLDHKKWVKVMPRDAYTYLEY 502


>gi|284008672|emb|CBA75316.1| ribonuclease G [Arsenophonus nasoniae]
          Length = 474

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 201/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V M  
Sbjct: 61  HTECIAGDEQKNFHVRDIGELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMLG 120

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +    ++   +    L      G I+RTA       E+ +D  +L RLW
Sbjct: 121 ASHVGVSQRIESEEERQR--LKSIVELFCDENGGFIIRTAAEGVGDDELAQDAAFLKRLW 178

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + E      +   +Y E  L  R IRD     +  I V  +  +   K+F+   +P  
Sbjct: 179 SKIVERKKRHKSRMQIYGELALAHRIIRDFAGASLDRIRVDSKLTFVSLKEFIDEYVPEM 238

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y+ P PI     +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 239 TVKLELYQGPLPILDLYDVEKEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 298

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA++ IARQLRLR+L G+I++DFIDM + ++ R V   L++SL KDR 
Sbjct: 299 RNLEETIFNTNIEASQAIARQLRLRNLGGIIIIDFIDMLDPEHRRRVLASLEQSLLKDRV 358

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 359 KTTINEFSQLGLVEMTRKRTRESLEHVLCDECPTCQGRGTVKSVETVCYEILREIVRINR 418

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A+  +V+    VV  L   +   + E E   G S+ V I    + + F +
Sbjct: 419 TIDANRFLVYASPAVVEALNGDESHVLAEVEIFVGKSVKVQIESLYSQEQFDV 471



 Score =  115 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHP 76
          +  +    ++E+  E E K+ I GNIY  +V+RV P +QAAFVD G  +  FL   +I P
Sbjct: 1  MAYIDGGVLQEIHIEREAKRGIVGNIYKGRVSRVLPGMQAAFVDIGLEKSAFLHASDIMP 60


>gi|312958982|ref|ZP_07773501.1| ribonuclease G [Pseudomonas fluorescens WH6]
 gi|311286752|gb|EFQ65314.1| ribonuclease G [Pseudomonas fluorescens WH6]
          Length = 485

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 208/399 (52%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+      +        
Sbjct: 84  ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVGISLKIEDEGERE 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  K   +      +    G ILRTA       EI  D  YL RLWD +        AP 
Sbjct: 144 RLKKVVSDCVAAEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGAQIKTIGAPS 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+  L  R +RDL    I +I +   + ++    F+  LMP  A  +  Y    PIF
Sbjct: 204 VIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQRTTQFVAELMPEIADRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+ +   + C+ C+G G +++  +V   I R +      Y A    V  +  
Sbjct: 384 MTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + E E   G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 482



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   K+ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQKRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|255318773|ref|ZP_05359999.1| ribonuclease, Rne/Rng family [Acinetobacter radioresistens SK82]
 gi|255304029|gb|EET83220.1| ribonuclease, Rne/Rng family [Acinetobacter radioresistens SK82]
          Length = 484

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 122/412 (29%), Positives = 215/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + +  + +    + E+++  QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 71  NDMIWPRNQSTPNVFELLQPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPFGNHI 130

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ +   ++        VI+RTA     + +I +D  YL +LW+ 
Sbjct: 131 GVSQRIESEEERDR-LRSLIEKIQQQHDLPGSVIVRTAADGVDEADIAQDMAYLAKLWEY 189

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++     +  P L++EE  L +R IRDL  ++ ++I +   + Y +  +F++  +P    
Sbjct: 190 IQRKQRATTVPSLIFEELPLPQRVIRDLANEETAKIYIDSREIYTKLSEFIEEFVPGMQD 249

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  L    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 250 RLIHYPGERPLFDLYNVEEDLQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 309

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + I RQLRLR+L G+I++DFIDM+E  +   V  + ++ L++D A+ 
Sbjct: 310 LEDTVFKTNMEATQVIVRQLRLRNLGGIIIIDFIDMQEANHRNEVMHQFEKMLERDHAKT 369

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           ++  +S  GL+EM+R+R R S+     + C  C+G GY+++  +V   I R +  Y   +
Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCEACPTCQGRGYVKTAETVCYEIFREIMRYARAF 429

Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 430 ESQSGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 481



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M++++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 1  MSDELLINVT-PMECRVALVENGTVNELFVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 60 IGLSRTAFLHINDM 73


>gi|120601371|ref|YP_965771.1| ribonuclease [Desulfovibrio vulgaris DP4]
 gi|120561600|gb|ABM27344.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris DP4]
          Length = 489

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 159/419 (37%), Positives = 241/419 (57%), Gaps = 4/419 (0%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
              N  +  +    +       P K K+   +Q+V+K  Q +LVQ+VKE  GNKGA +T+
Sbjct: 69  AEKNGFLQIDEVHPEYYISPHDPNKGKKYPLMQKVLKAGQEVLVQVVKEPTGNKGAFLTS 128

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           YLSL GR+ VL P   +   +SRK+ +  +R  L+E+  GL    G+GVI+RT  A  +K
Sbjct: 129 YLSLPGRFLVLTPGREQIG-VSRKVEDDEERSRLREMLEGLSAGPGLGVIVRTVSAGTSK 187

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             ++RD ++L RLW +VR+       P  +Y+E +L  R++RD    D+SE+ V      
Sbjct: 188 TTLQRDLQFLKRLWKDVRKKGTTEQTPCQIYQEPDLATRSVRDYLTDDVSEVWVDDAATA 247

Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
              ++F+ L+ P  A +V+ + +    ++ R GI  QLD ++  EV LPS G ++ +QTE
Sbjct: 248 ELIREFVTLVFPRKASLVKLHTDPERTLWERFGIRKQLDQIYSREVILPSGGRLVFDQTE 307

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL++ID+NSG+   +   E  AL+TN EAAE IA+QLRLRD+ G +V+DFI+M +  + R
Sbjct: 308 ALMAIDINSGKIAGKTNFESMALKTNTEAAESIAQQLRLRDIGGQVVIDFIEMRDHNHWR 367

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK L+ ++K DRAR  VG +S FGLL++ RQR  SS L  T + C  C+G+G  R+  
Sbjct: 368 EVEKTLRNAMKGDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCRGSGLRRNME 427

Query: 498 SVALSILRSVEEYLLQYTAHNIIV--HTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             +L  LR +   L        +    T  ++  YLLN KR  ++E E RF + + V  
Sbjct: 428 WQSLQALRELHRQLRALPQGQCVHVFETSPELAFYLLNHKRERLLELERRFNLRLEVRP 486



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 45/80 (56%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           KM I     E+  V +  D  V E   E  H+ + KGNIY   +  ++ +LQAAFV+YG
Sbjct: 9  RKMYISVLPGEQVEVALSEDGAVTEYYVEMLHQAKTKGNIYKGVINNIDTNLQAAFVNYG 68

Query: 63 GNRHGFLPFLEIHPDYYQIP 82
            ++GFL   E+HP+YY  P
Sbjct: 69 AEKNGFLQIDEVHPEYYISP 88


>gi|170723439|ref|YP_001751127.1| ribonuclease [Pseudomonas putida W619]
 gi|169761442|gb|ACA74758.1| ribonuclease, Rne/Rng family [Pseudomonas putida W619]
          Length = 485

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 124/399 (31%), Positives = 209/399 (52%), Gaps = 3/399 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G+KGA +TT LS+  RY V MP +S      +        
Sbjct: 84  ITALVHEGQALVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRSSHVGISLKIEDEAERD 143

Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +  +   +     ++    G ILRTA       EI +D  YL RLW+ +        AP 
Sbjct: 144 RLKQVVSDCMDSEDIKNAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGSQIQTCGAPT 203

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PIF
Sbjct: 204 VIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPIF 263

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++      +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 264 DLYGVEDEIQRALDRKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A  IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+  +  I+  GL++
Sbjct: 324 ATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+ +   + CT C+G G +++  ++   I R +      Y A    V  +  
Sbjct: 384 MTRKRTRESLEQVLCEPCTACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQK 443

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           VV  LL+++   + E E   G +I   +    + + + +
Sbjct: 444 VVDRLLDEESGNVAELETFIGRTIRFQVESMYSQEQYDV 482



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHASEI 73


>gi|320539554|ref|ZP_08039221.1| putative ribonuclease G [Serratia symbiotica str. Tucson]
 gi|320030407|gb|EFW12419.1| putative ribonuclease G [Serratia symbiotica str. Tucson]
          Length = 489

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 200/413 (48%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFHVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R   +    +   + A         G I+RTA     + E+ +D ++L RLW
Sbjct: 136 AAHVGLSQR--IDSEAERERLKNAVAAYCDELGGFIIRTAAEGIGEEELAQDADFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +   + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 AKVLERKKRNRTKYKLYGELALAQRILRDFAGAALERIRVDSRLTYDLLVEFTDEYIPDI 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLELYTGNPPIFDLYDVENEIQRALERKVALKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+++L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMHNEEHRRRVLHSLEQALNKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C+ C   G +++  +V   ILR +     
Sbjct: 374 KTTVNGFSQLGLVEMTRKRTRESIEHVLCHSCSACNRRGTVKTVETVCYEILREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+  + V   L +++   + E E   G  + V I    + + F +
Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESNALAEVEIFVGKQVKVQIEPLYSQEQFDV 486


>gi|300926011|ref|ZP_07141834.1| ribonuclease, Rne/Rng family [Escherichia coli MS 182-1]
 gi|300417955|gb|EFK01266.1| ribonuclease, Rne/Rng family [Escherichia coli MS 182-1]
          Length = 386

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 189/385 (49%), Gaps = 2/385 (0%)

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQ+VK+  G KGA +TT ++L  RY V MP  S      R  +     + LK++     
Sbjct: 1   MVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERER-LKKVVAEYC 59

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G G I+RTA     + E+  D  YL R+W  V E        + +Y E  L +R +R
Sbjct: 60  DEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 118

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D    ++  I V     Y    +F    +P     +  Y    PIF    +E ++    +
Sbjct: 119 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 178

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            +V L S GY+II+QTEA+ ++D+N+G       ++DT   TN+EA + IARQLRLR+L 
Sbjct: 179 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLG 238

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I++DFIDM  + + R V   L+++L KDR +  V   S  GL+EM+R+R R S+    
Sbjct: 239 GIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 298

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
              C  C G G +++  +V   I+R +      Y +   +V+    V   L  ++  ++ 
Sbjct: 299 CNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLA 358

Query: 541 EYEARFGVSINVVIGIELADKLFYI 565
           E E   G  + V I      + F +
Sbjct: 359 EVEIFVGKQVKVQIEPLYNQEQFDV 383


>gi|308188294|ref|YP_003932425.1| ribonuclease G [Pantoea vagans C9-1]
 gi|308058804|gb|ADO10976.1| ribonuclease G [Pantoea vagans C9-1]
          Length = 489

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFIVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK +        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEKERDR-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    L+Y E  L +R +RD     +  I V          +F    +P  
Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDMLVEFTGEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 AGKLELYNGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLESALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGINGFSALGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L   +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVEIFVGKQVKVHVEALYTQEQFDV 486



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  +  FL   +I P
Sbjct: 60 IGLEKAAFLHASDIMP 75


>gi|327395445|dbj|BAK12867.1| ribonuclease G CafA [Pantoea ananatis AJ13355]
          Length = 489

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFVVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK +        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 AAHVGVSQRIASEKERER-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    L+Y E  L +R +RD     +  I V          DF    +P  
Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDLLNDFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 ASKLELYNGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLETALNKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGISGFSALGLVEMTRKRTRESIEHVLCEDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L   +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVELFVGKQVKVHVEALYTQEQFDV 486



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PAETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|62185385|ref|YP_220170.1| putative ribonuclease [Chlamydophila abortus S26/3]
 gi|62148452|emb|CAH64222.1| putative ribonuclease [Chlamydophila abortus S26/3]
          Length = 510

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 139/425 (32%), Positives = 234/425 (55%), Gaps = 3/425 (0%)

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            N                     K +  I+E++K    +LVQ+VKE  G KGA +T+ +S
Sbjct: 75  ENSKKFEQMFDMDFDVLHQENNEKPEAPIEELLKLDSPVLVQVVKEPIGTKGARLTSNIS 134

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           + GRY VL+PN+     +SRKI +P  R  LK++ R  E+P  MG+I RTA    +   +
Sbjct: 135 IPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFEMPQDMGLICRTASVLASTDAL 193

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             +   L+  W  + E   ++  P L+YEE +++K+A+     K+   +++     Y++ 
Sbjct: 194 INEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYKRLLIDDYSTYQKC 253

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K  +K   P+ +  +  Y D  P+F R  IE ++D   + ++ L S GY+  ++TEA+ +
Sbjct: 254 KRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSGGYLFFDKTEAMHT 313

Query: 382 IDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           IDVNSGRST+ E  +E+T +Q NLEAAEEIARQLRLR++ GL+++DFIDM+ +KN R V 
Sbjct: 314 IDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVL 373

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++LKE +K D AR  + ++S FGL+EM+RQR R S++++    C YC G   I++  SV 
Sbjct: 374 ERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPYCSGNAIIKTPESVV 433

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-KRATIVEYEARFGVSINVVIGIELA 559
           + I R +++ +      ++ +  H ++  ++  +     ++         + +     L 
Sbjct: 434 IEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDELIRLAKHLKAKLQINTSDSLH 493

Query: 560 DKLFY 564
              + 
Sbjct: 494 LNHYQ 498


>gi|149921915|ref|ZP_01910359.1| ribonuclease G [Plesiocystis pacifica SIR-1]
 gi|149817268|gb|EDM76745.1| ribonuclease G [Plesiocystis pacifica SIR-1]
          Length = 507

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 150/496 (30%), Positives = 237/496 (47%), Gaps = 6/496 (1%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPND-HSLEEVAPIANFSQETEEESIISAN 142
             R AL++   + +   E   +    G+V        L  +        E +   + + +
Sbjct: 14  ETRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGEDKAAFLYAGD 73

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
                  E V       VPK+  +   I +++   Q +LVQ+VK+    KGA +TTY+SL
Sbjct: 74  IASQKPGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTKGARITTYISL 133

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
            GR  V MP  S      R   N   ++           P G G I+RT     +  +++
Sbjct: 134 PGRNVVFMPTVSHVGISRRI--NSERQRRRLRRLVDEMRPKGSGFIVRTVARHASSAQVR 191

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              +YL+RLW N++       AP L+Y + +L+ R +RD    D + +IV     Y   K
Sbjct: 192 AGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVDDRAAYERLK 251

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            F    +P YA  +  +     IF   GIE+++D   + +V L S G ++ +Q EAL +I
Sbjct: 252 RFADAFLPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLVFDQGEALTAI 311

Query: 383 DVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           DVN+G+    +   +E T  QTNLEAA+EIA QLRLR++ GLI++DFIDM+ + N R V 
Sbjct: 312 DVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDMDRESNRRKVY 371

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           ++L+++L++DRA+  +  IS  GL+EMSR+R R S+       C  C G GY +S S++ 
Sbjct: 372 RRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGKGYHKSPSTIC 431

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
             ILR +           I V  H DV   +   +R+ +     R   +I+V        
Sbjct: 432 YEILRQIRREGEHLAGEVISVTAHPDVAELMNGAERSALDHAVKRVHKAIDVQGRKGFHP 491

Query: 561 KLFYIEKGSPVQALVN 576
           + F I +G   +    
Sbjct: 492 EKFEI-RGKKARRANP 506


>gi|304396979|ref|ZP_07378859.1| ribonuclease, Rne/Rng family [Pantoea sp. aB]
 gi|304355775|gb|EFM20142.1| ribonuclease, Rne/Rng family [Pantoea sp. aB]
          Length = 489

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFIVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK +        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 ASHVGVSQRIESEKERDR-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    L+Y E  L +R +RD     +  I V          +F    +P  
Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDMLVEFTGEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 AGKLELYNGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLESALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGINGFSTLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L   +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVEIFVGKQVKVHVEALYTQEQFDV 486



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  +  FL   +I P
Sbjct: 60 IGLEKAAFLHASDIMP 75


>gi|241759123|ref|ZP_04757232.1| ribonuclease G [Neisseria flavescens SK114]
 gi|241320619|gb|EER56889.1| ribonuclease G [Neisseria flavescens SK114]
          Length = 486

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 203/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 78  QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 137

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + +   L   A  G I+RT   + +  +++ D  YL ++W+++++ A
Sbjct: 138 QRIEDDAERSNLRERLNNLLPENACHGYIIRTNAENASDDQLQSDINYLTKVWEHIQKQA 197

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD++  D  +I+V   + +R    F +  +      +  +
Sbjct: 198 KIQPPETLLYQDLPLSLRVLRDMFSFDTHKILVDSTENHRRMTQFAEQYVQGALGRIELF 257

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 258 KGERPLFETHNIEQEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 317

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 318 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEVHREAVLQELAKALAFDRTRVTLNGF 377

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y     
Sbjct: 378 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAF 437

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 438 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 483


>gi|85713047|ref|ZP_01044084.1| RNase G [Idiomarina baltica OS145]
 gi|85693150|gb|EAQ31111.1| RNase G [Idiomarina baltica OS145]
          Length = 489

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 124/411 (30%), Positives = 205/411 (49%), Gaps = 2/411 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              E + ++ K Q  I +++   Q ++VQ+VK+  G KGA +TT ++L  RY V MP ++
Sbjct: 78  DGGETIEREEKSQLNITQLVHQGQPIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPQSN 137

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 R   +  D +                 I+RTAG    +  +  D E+L RLW  
Sbjct: 138 HVGVSQR--IDDADERERLRSIAESLSHDEGKFIVRTAGEGVDEGSLTSDAEFLTRLWSQ 195

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           +++   +     ++YE+ NL  R +RD   + I  I V       + K F K  +P    
Sbjct: 196 IKKRKKSQRRVGILYEDLNLCCRVLRDFVGEAIERIRVDSRTTLDQLKLFTKDFIPELTH 255

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
           ++  Y    PIF    IE ++       V L S G +II+QTEA+ +ID+N+G       
Sbjct: 256 VLEYYRGDRPIFDLFDIENEIQRALDRRVELKSGGSLIIDQTEAMTTIDINTGAFVGHRN 315

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +E+T   TN+EA + IARQLRLR+L G+I++DFIDM+++++ R V   L+++L KDRA+ 
Sbjct: 316 LEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMQDEEHKRRVLHSLEQALNKDRAKT 375

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            +   +  GL+EM+R+R R S+       C  C+G G +++  +V   I+R +      Y
Sbjct: 376 SINGFTTLGLVEMTRKRTRESLEHVLCGECPVCRGRGSMKTVETVCYEIMREIVRVHKAY 435

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            A   +V+  + V   LLN++   + E E      I +        + F +
Sbjct: 436 EADKFVVYASAPVSEALLNEESHALAELELFVSRQITIQTEPLYNQEQFDV 486


>gi|120600383|ref|YP_964957.1| ribonuclease G [Shewanella sp. W3-18-1]
 gi|146291685|ref|YP_001182109.1| ribonuclease G [Shewanella putrefaciens CN-32]
 gi|120560476|gb|ABM26403.1| RNAse G [Shewanella sp. W3-18-1]
 gi|145563375|gb|ABP74310.1| RNAse G [Shewanella putrefaciens CN-32]
          Length = 502

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 90  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +  K       V    G I+RTA     + E+ +D  +L R+W
Sbjct: 150 SSHVGVSQRIELEEERSRLKKITL--PYVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 207

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 208 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFDELQTFAQEFMPEI 266

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 267 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM  +++   V   L  +L KDR 
Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLNEEHKTRVLNSLNSALAKDRV 386

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V+  I R +     
Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVVCSECPACHGTGSMKTVETVSYEIFREIIRLNR 446

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L  ++   I E E      I +      +   + +
Sbjct: 447 AYDADEFLLYCSPAVYQSLSGEESHLIAELEVYISKRIRLQNEPMYSQHKYDV 499


>gi|300721801|ref|YP_003711079.1| RNase G (ribonuclease G) [Xenorhabdus nematophila ATCC 19061]
 gi|297628296|emb|CBJ88857.1| RNase G (ribonuclease G) [Xenorhabdus nematophila ATCC 19061]
          Length = 489

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 128/413 (30%), Positives = 206/413 (49%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I +++   Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECIAGEERKNFHVRDISKLVYQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S    +S++I +  +R+ LK I        G G I+RTA       EI +D  +L RLW
Sbjct: 136 ASHVG-VSQRIESEEERERLKNIVMDYCDEHG-GFIIRTAAEGVGTEEIAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    ++  + VY E  L  R +RD     +  I V   + + + ++F+   +P  
Sbjct: 194 SKVIERKKRNITKNKVYGELALAPRILRDFVGASLGRIRVDSRQTFLQLQEFIDEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  ++   PIF   G+E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 NAKLEHFQGEQPIFDLYGVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  +++ R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLTSLELALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C+G G ++S  +V   ILR +     
Sbjct: 374 KTTINGFSALGLVEMTRKRTRESIEHILCDNCPTCQGRGTVKSVETVCYEILREIVRVNR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              A   +V+    V   L   +   + E E   G  + V      + + F +
Sbjct: 434 AIDADRFLVYASPAVSEALKGDESHALAEVEIFVGKQVRVQTEQLYSQEQFDV 486


>gi|308051166|ref|YP_003914732.1| RNAse G [Ferrimonas balearica DSM 9799]
 gi|307633356|gb|ADN77658.1| RNAse G [Ferrimonas balearica DSM 9799]
          Length = 495

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 139/485 (28%), Positives = 231/485 (47%), Gaps = 9/485 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R AL++   + +   E  +     G++       +      A      E  + + A
Sbjct: 16  PTESRVALVEHGMLQEVHLERRSRRGIVGNIYRGKVTRVLPGMQAAFVDIGQERAAFLHA 75

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           ++ V       +  +      +  R   I  +++  Q ++VQ+VK+  G KGA +TT ++
Sbjct: 76  SDIVPHTECVDEEDA------RAFRAEDIVSLVRQGQDIMVQVVKDPLGTKGARLTTDIT 129

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L  RY V MP ++      R + +P +R+ LK I        G G I+RTA    ++IE+
Sbjct: 130 LPSRYLVFMPGSAHVGVSQR-VEDPQERERLKSIVGQFVDKDG-GFIIRTASEGVSEIEL 187

Query: 262 KRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
            +D  +L R+W  V E       +  L+YEE +L  R +RDL  + +  + V     Y  
Sbjct: 188 AQDAAFLRRVWRKVIERRKRPGKSVSLLYEEPSLPLRIVRDLATRTLDRVQVDSHLTYEA 247

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            K+F+   MP  +  V  Y    PIF    +E ++    Q +V L S GY+II+QTEA+ 
Sbjct: 248 LKEFVAEFMPETSAAVEHYRGKAPIFDLFDVENEIQRALQRKVELKSGGYLIIDQTEAMT 307

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +ID+N+G       +E+T   TNLEA + IARQLRLR+L G+I++DFIDM  +++   V 
Sbjct: 308 TIDINTGAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMVSEEHKNRVL 367

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
             L+ SL +DR +  +  +S  GL+EM+R+R R S+       C  C+G G +++  +V 
Sbjct: 368 HNLELSLAQDRVKTSISGLSQLGLVEMTRKRTRESLEHVLCGECPVCRGTGQLKTVETVC 427

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
             + R +      Y A   + +    V   L   +  ++ E E   G  + +      A 
Sbjct: 428 YELYREIIRVDRAYDADEFVAYVSPAVQEILEGDEAHSLAELEVYLGKRVRIKPEPLYAQ 487

Query: 561 KLFYI 565
             F +
Sbjct: 488 DKFDV 492


>gi|330501862|ref|YP_004378731.1| RNAse G [Pseudomonas mendocina NK-01]
 gi|328916148|gb|AEB56979.1| RNAse G [Pseudomonas mendocina NK-01]
          Length = 485

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 136/401 (33%), Positives = 222/401 (55%), Gaps = 5/401 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G+KGA +TT LS+  RY V MP TS    IS KI +  +
Sbjct: 83  PISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTSHVG-ISLKIEDEAE 141

Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           R+ LK++        G+    G ILRTA       EI  D  YL RLWD +     N+ A
Sbjct: 142 RERLKQVVADCVAAEGIEEAGGFILRTAAEGAGADEILIDIRYLRRLWDQIGAQIQNAKA 201

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P ++YE+ +L  R +RDL      +I V   + +++   F+  LMP  A  +  Y    P
Sbjct: 202 PVVIYEDLSLALRTLRDLVSPRTEKIRVDSRETFQKITQFVAELMPEIADRLEHYPGERP 261

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           IF   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNL
Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRTLEETIFKTNL 321

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL
Sbjct: 322 EAATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGL 381

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R R S+ +   + CT C+G G +++  ++   I R +      Y A +  V  +
Sbjct: 382 VQMTRKRTRESLEQILCEPCTACQGRGKLKTPETICYEIFREILREARAYQAESYRVLAN 441

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             VV  LL+++   + + EA  G +I   +    + + + +
Sbjct: 442 QKVVDRLLDEESGNVADLEAFIGRTIKFQVETMYSQEQYDV 482



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   K+ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQKRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHASEI 73


>gi|255590743|ref|XP_002535353.1| Ribonuclease G, putative [Ricinus communis]
 gi|223523379|gb|EEF27033.1| Ribonuclease G, putative [Ricinus communis]
          Length = 436

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/401 (29%), Positives = 208/401 (51%), Gaps = 1/401 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++  IQEV+   Q ++VQ++KE  G KGA +TT +S+AGR+ V +P         R    
Sbjct: 33  KERPIQEVLHEGQSIIVQVIKEAIGTKGARLTTEISIAGRFLVYLPYQKHIGVSQRIDIE 92

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
                    +   L      G I+RT   + T  E+  D EYL ++W  ++  +      
Sbjct: 93  EEREFLRNRLLGLLPEEREGGYIIRTMSENATDEELLADIEYLRKVWQKIQAESKKVGER 152

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L++ + +L +R +RD+ C + + I V   + +   K+F +L +    + +  Y+    +
Sbjct: 153 SLIFYDLSLPRRILRDVVCTETTSIRVDSREMFERLKEFAELYVSHAVKPLTHYKGERSL 212

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F    IE +++     +V L S GY+I +QTEAL ++DVN+G       + DT  +TNLE
Sbjct: 213 FEFYDIESEIEKALSRKVELKSGGYLIFDQTEALTTVDVNTGSFVSGKNLSDTIFKTNLE 272

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+ IARQLRLR+L G+I++DFIDM+E     +V ++L++++  DRAR+ V   S  GL+
Sbjct: 273 AAQTIARQLRLRNLGGIIIIDFIDMDEDAQREAVLEELRKAVTLDRARINVNGFSALGLV 332

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTH 524
           E++R+R R S+     + C  C+G G +++  ++   I+R V     Q+  A    +   
Sbjct: 333 ELTRKRTRESLAHLLCESCQVCQGRGELKTAQTICYEIMREVLRESKQFKSAKEFKILAS 392

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +V+  L +++  ++          +++    +   + F I
Sbjct: 393 PEVINMLGDEESQSLASLSDFIKKPLSLHPDTQYGREEFDI 433



 Score = 44.2 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 54 LQAAFVDYGGNRHGFLPFLEI 74
          +Q+AFV+ G  R  FL   +I
Sbjct: 1  MQSAFVEIGLQRAAFLHAADI 21


>gi|319637785|ref|ZP_07992551.1| cytoplasmic axial filament protein [Neisseria mucosa C102]
 gi|317400940|gb|EFV81595.1| cytoplasmic axial filament protein [Neisseria mucosa C102]
          Length = 497

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 203/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +       I+ ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P        
Sbjct: 89  QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 148

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +       + +   L   A  G I+RT   + +  +++ D  YL ++W+++++ A
Sbjct: 149 QRIEDDAERSSLRERLNNLLPENACHGYIIRTNAENASDAQLQSDINYLTKVWEHIQKQA 208

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y++  L  R +RD++  D  +I+V   + +R    F +  +      +  +
Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSLDTHKILVDSTENHRRMTQFAEQYVQGALGRIELF 268

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 269 KGERPLFETHNIEQEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   
Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEVHREAVLQELAKALSFDRTRVTLNGF 388

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y     
Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAF 448

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494


>gi|310766189|gb|ADP11139.1| ribonuclease G [Erwinia sp. Ejp617]
          Length = 489

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+        G G I+RTA     + E+  D  +L RLW
Sbjct: 136 ASHVGVSQRIDSEAERNR-LKEVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     +    +F    +P  
Sbjct: 194 TKVIERKKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEHLLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486


>gi|300718644|ref|YP_003743447.1| Sribonuclease G [Erwinia billingiae Eb661]
 gi|299064480|emb|CAX61600.1| SRibonuclease G [Erwinia billingiae Eb661]
          Length = 489

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 193/413 (46%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKNFSVRDISELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     +  K            G I+RTA     ++E+  D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERDRLKK--VVSAYCDELGGYIIRTAAEGVGEVELASDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     Y    +F    +P  
Sbjct: 194 TKVIERRKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLTYEHLVEFTGEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 TSKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA   IARQLRLR+L G+I++DFIDM  + + R V   L++ L KDR 
Sbjct: 314 RNLDETIFNTNIEATHAIARQLRLRNLGGIIIIDFIDMTNEDHRRRVLHSLEQGLSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KSGIHGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L +++   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPAVGEALKSEESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486


>gi|259906974|ref|YP_002647330.1| ribonuclease G [Erwinia pyrifoliae Ep1/96]
 gi|224962596|emb|CAX54051.1| Ribonuclease G [Erwinia pyrifoliae Ep1/96]
 gi|283476768|emb|CAY72606.1| ribonuclease G [Erwinia pyrifoliae DSM 12163]
          Length = 489

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+        G G I+RTA     + E+  D  +L RLW
Sbjct: 136 ASHVGVSQRIDSEAERNR-LKEVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     +    +F    +P  
Sbjct: 194 TKVIERKKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEHLLEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM ++ + R V   L+++L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNDEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486


>gi|226951644|ref|ZP_03822108.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter sp. ATCC 27244]
 gi|294651321|ref|ZP_06728642.1| ribonuclease G [Acinetobacter haemolyticus ATCC 19194]
 gi|226837625|gb|EEH70008.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter sp. ATCC 27244]
 gi|292822793|gb|EFF81675.1| ribonuclease G [Acinetobacter haemolyticus ATCC 19194]
          Length = 484

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/412 (29%), Positives = 212/412 (51%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   Q+L VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 71  NDMVWPRSQPTPNVFELLHPGQMLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 130

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R        + L+ I   ++        VI+RTA     +  I +D  YL +LW+ 
Sbjct: 131 GVSQRIEAEEERDR-LRGIIEHIQAEHNLPGSVIVRTAAEGVDEAAIAQDMNYLSKLWEF 189

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++        P L++EE  L +R +RDL   + ++I V   + + +  DF+K  +P+   
Sbjct: 190 IQRKQKEVSTPELIFEELPLPQRIVRDLASDETAKIYVDSREIHGKLNDFVKEFVPTIQN 249

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++++QTEA+ +IDVN+G       
Sbjct: 250 RLLHYPGEKPLFDLYNVEEDIQKALQTRVALKSGGYLMLDQTEAMTTIDVNTGSYVGGRS 309

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + I+RQLRLR+L G+I++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 310 LEDTVFKTNMEATQVISRQLRLRNLGGIIIIDFIDMQEAGHREEVMRQFEKMLERDHAKT 369

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           ++  +S  GL+EM+R+R R S+     + C  C+G GY+++  +V   I R +  Y   +
Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCYEIFREIMRYARAF 429

Query: 515 TAH-NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 430 DSKGGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 481



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MA ++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 1  MAEELLINVT-PMECRVALIENGTVNELFVERTAKRGLVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 60 IGLSRTAFLHINDM 73


>gi|303231360|ref|ZP_07318094.1| putative Ribonuclease G [Veillonella atypica ACS-049-V-Sch6]
 gi|302513956|gb|EFL55964.1| putative Ribonuclease G [Veillonella atypica ACS-049-V-Sch6]
          Length = 475

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 234/457 (51%), Gaps = 7/457 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D        + E    ++ +    + ++ +  N + +   D+ G     +  +  ++  I
Sbjct: 19  DEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              +   Q +LVQ+VKEE   KGA VT  +SLAGR+ VL+P  S+G  IS+KIT+    +
Sbjct: 79  LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-ESIR 136

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
           +  +      V  G G I+RTA A  +  EI RD +YL R W +V +    + +   +Y 
Sbjct: 137 SQLQELAAPYVKEGCGFIIRTAAAKASADEIARDMDYLWRTWQHVLKRFKVAKSGTDLYS 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           + +   R +RD   +++ EIIV  + G     D +     S    V ++ D  PIF  + 
Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409
           IE QL+ L   ++ LPS G + I+ TEAL   DVNS   T +    +  A   N EAA+E
Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLRD+ G+IVVDFIDM++K++ + + K L    K D+ +  V  IS+ GL+EM+R
Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLSAQAKLDKMKTVVCGISSLGLVEMTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528
           +R R  +       C  C G GY+ S  +V + I+R + E         N+ +  H +V 
Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKSNLEIEVHPEVA 436

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            YL    ++ + +  A  G SI++V+  +++ + + +
Sbjct: 437 QYLT---KSVLDDLGASIGRSISIVVNPQISREGYSL 470



 Score = 80.8 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 4  KMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          K+L++    EE R+ V+ +  ++ +   E   +  +  ++Y   V  V   +QAAFVD G
Sbjct: 3  KILVNVMR-EEIRMAVIDEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61

Query: 63 GNRHGFL 69
          G+++ +L
Sbjct: 62 GSQNAYL 68


>gi|291619115|ref|YP_003521857.1| CafA [Pantoea ananatis LMG 20103]
 gi|291154145|gb|ADD78729.1| CafA [Pantoea ananatis LMG 20103]
          Length = 489

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFVVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +      R  +     + LK +        G G I+RTA     + E+ +D  +L RLW
Sbjct: 136 AAHVGVSQRIASEKERER-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +    L+Y E  L +R +RD     +  I V          +F    +P  
Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDLLNEFTSEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ +ID+N+G     
Sbjct: 254 ASKLELYNGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +++T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+ +L KDR 
Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLETALNKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGISGFSALGLVEMTRKRTRESIEHVLCEDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L   +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVELFVGKQVKVHVEALYTQEQFDV 486



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PAETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|127511341|ref|YP_001092538.1| ribonuclease G [Shewanella loihica PV-4]
 gi|126636636|gb|ABO22279.1| RNAse G [Shewanella loihica PV-4]
          Length = 500

 Score =  246 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 122/396 (30%), Positives = 194/396 (48%), Gaps = 3/396 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP +S      R      + 
Sbjct: 105 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQR--IESEEV 162

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +   +      V    G I+RTA  +  + E+ +D  +L R+W  V E         L+Y
Sbjct: 163 RARLKGLTEPFVDEDGGFIIRTAAENAGEQELIQDAAFLRRVWAKVCERR-KRPGVSLLY 221

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++  L  R +RD    ++ +I V   + Y E   F +  MP  A  +  Y    PIF   
Sbjct: 222 QDLALPVRIVRDFVGTELDQIQVDSGQTYEELLQFTQEFMPEIADKIEHYSGRVPIFDLY 281

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E ++      +V L S GY+II+QTEA+ ++D+N+G       +E+T   TNLEA   
Sbjct: 282 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATHA 341

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM  + + + V   L+ +L  DR +  V   S  GL+EM+R
Sbjct: 342 IARQLRLRNLGGIIIIDFIDMLNEDHKKRVLSTLEAALANDRVKTNVSGFSGLGLVEMTR 401

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+       C  C G G +++  +V+  I R +      Y A   +V+    V  
Sbjct: 402 KRTRESLEHVLCGECPACFGTGSLKTVETVSYEIFREIIRLNRGYDADEFLVYCAPTVYN 461

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            L  ++   + E  A  G  + +      A   F +
Sbjct: 462 SLTGEESHLVAELGAYIGKHVRLQNEPMYAQNKFDV 497



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++LI+ +   E RV ++    ++E+  E   K+ + GNIY  KV+RV P +QAAFVD G 
Sbjct: 16 ELLINVT-PTEARVALVEYGILQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 74

Query: 64 NRHGFLPFLEIHP 76
          ++  FL   +I P
Sbjct: 75 DKAAFLHASDIVP 87


>gi|146305895|ref|YP_001186360.1| RNAse G [Pseudomonas mendocina ymp]
 gi|145574096|gb|ABP83628.1| RNAse G [Pseudomonas mendocina ymp]
          Length = 485

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 127/400 (31%), Positives = 212/400 (53%), Gaps = 3/400 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I  ++   Q L+VQ+ K+  G+KGA +TT LS+  RY V MP TS      +       
Sbjct: 83  PISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTSHVGISLKIEEEAER 142

Query: 229 RKNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
            +  +   +      +    G ILRTA       EI  D  YL RLWD +     N+ AP
Sbjct: 143 DRLKQVVADCVAAEGIEEAGGFILRTAAEGAGADEILIDIRYLRRLWDQIAAQIQNAKAP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+ +L  R +RDL      +I V   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 SVIYEDLSLALRTLRDLVSPRTEKIRVDSRETFQKITQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRTLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C+ C+G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQILCEPCSACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + + EA  G +I   +    + + + +
Sbjct: 443 KVVDRLLDEESGNVADLEAFIGRTIKFQVETMYSQEQYDV 482



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   K+ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQKRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   EI
Sbjct: 60 IGLERAAFIHASEI 73


>gi|292486775|ref|YP_003529645.1| ribonuclease G [Erwinia amylovora CFBP1430]
 gi|292900825|ref|YP_003540194.1| ribonuclease G [Erwinia amylovora ATCC 49946]
 gi|291200673|emb|CBJ47805.1| ribonuclease G [Erwinia amylovora ATCC 49946]
 gi|291552192|emb|CBA19229.1| ribonuclease G [Erwinia amylovora CFBP1430]
 gi|312170843|emb|CBX79103.1| ribonuclease G [Erwinia amylovora ATCC BAA-2158]
          Length = 489

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LKE+        G G I+RTA     + E+  D  +L RLW
Sbjct: 136 ASHVGVSQRIDSEAERNR-LKEVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     + +  +F +  +P  
Sbjct: 194 TKVIERKKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEQLIEFTREYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L ++L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLDQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYVSPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486


>gi|71736189|ref|YP_276290.1| ribonuclease G [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556742|gb|AAZ35953.1| ribonuclease G [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 485

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYRAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|197121148|ref|YP_002133099.1| ribonuclease, Rne/Rng family [Anaeromyxobacter sp. K]
 gi|196170997|gb|ACG71970.1| ribonuclease, Rne/Rng family [Anaeromyxobacter sp. K]
          Length = 860

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 141/541 (26%), Positives = 235/541 (43%), Gaps = 16/541 (2%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             K+ K    IQ+++K  Q ++VQ+ K+  G KGA +T+++SL GR+ V MP        
Sbjct: 326 EEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGIS 385

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +   R+           P G G I+RT   +    +++ D  +L+++W+ +    
Sbjct: 386 RRIEKDGERRR--LREIVDRMRPEGTGFIVRTVAENVEAAKLEADIRFLIQVWNEIIRTK 443

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               AP L++ + +LI RA RDL+  ++ ++++     Y     F+    P     +  Y
Sbjct: 444 DKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERILRFVHDQAPHLESQIESY 503

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   PIF   GIE +L    Q +V L S GY+I++Q EAL +IDVNSGR   +  +E+T 
Sbjct: 504 QGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETI 563

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            + N+EAA+EI  QLRLR++ G+I++DFIDM++ +N   V K L+++L +D+A+  V  I
Sbjct: 564 TKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKI 623

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R+R SV     + C YC G G+++S+ ++A  I R +      +    +
Sbjct: 624 SELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAYEIFREIRREAPHFPEPVL 683

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALV 575
           +V++H +V   L   +R  +     RF  +I V        + F I    E+        
Sbjct: 684 VVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQEQFDIYGRQERAEQGGGGG 743

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                 G                                              R  R  R
Sbjct: 744 GGSGSGGGSGGGGGGSGGGGGGGGGGGRDRDRGRGRDRRGGRGGERGGERND-RNERGDR 802

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
             R    +  + G  +D            +           +       G         P
Sbjct: 803 NERGDRGERGERGERND---------RGGERSDRGERGQRGDRGGERPEGGEPRAAPEAP 853

Query: 696 P 696
           P
Sbjct: 854 P 854



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ++I+A+   ETRV ++ +  + E   E + +K I GNIY  +V RV P +QAAFVD G  
Sbjct: 7  LVINAAGA-ETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLE 65

Query: 65 RHGFLPFLEIHPD 77
          +  FL   +++ D
Sbjct: 66 KAAFLYVGDVYGD 78


>gi|284044117|ref|YP_003394457.1| ribonuclease, Rne/Rng family [Conexibacter woesei DSM 14684]
 gi|283948338|gb|ADB51082.1| ribonuclease, Rne/Rng family [Conexibacter woesei DSM 14684]
          Length = 636

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 216/429 (50%), Gaps = 10/429 (2%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
            +P     + K    I ++++  Q ++VQ+VK+    KGA ++  L++ GRY V  P   
Sbjct: 103 ETPRRGRGQGKDGLKIHDLLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTP-QG 161

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +G  +SR++ +    +  KE AR      G G I+RTA     + + +R+ +YL +L D 
Sbjct: 162 EGVGVSRRLPDKERDRLRKEAAR--LDLQGGGAIIRTAAFGARREDFEREMQYLFKLNDV 219

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           + +    + AP LV++E +L  R +RD++       +V  +K Y+    F     P    
Sbjct: 220 LAKRVEETQAPDLVFQEADLSIRVVRDVFSDHFERAVVDDQKQYQRLVSFFTRTAPELVD 279

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST---R 391
            V  +E+  P+F R G+E ++       V LPS GY+II+  EAL  IDVN+G      R
Sbjct: 280 RVELWEEEAPLFERFGVEREIQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGR 339

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +EDT  +TNLEAAEE  RQLRLRD+ G+IV+DFIDM   +N  +V K L++SL +DR
Sbjct: 340 GARLEDTITRTNLEAAEEAVRQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDR 399

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            +  V  IS  GL+EM+RQ +   V E  T+ C  C G G IRS+ ++A+   R + +  
Sbjct: 400 TKTFVVEISPLGLVEMTRQNVTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIA 459

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE----K 567
            ++ A  +++  +  V           + + E   G   +      L    F I     +
Sbjct: 460 KEHEAEALLLQINPRVGAVFTGNSARILRQLEEETGKWFHFEGSEGLPLDHFAITFEGSR 519

Query: 568 GSPVQALVN 576
               +  + 
Sbjct: 520 DEVAERALP 528



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 25/98 (25%)

Query: 1  MANKMLIDASHVEETRVVVLR------------------------DNRVEELDFESEHKK 36
          M  ++L+      ETRV +L                           RV EL  E    +
Sbjct: 1  MKKQVLVSVDRG-ETRVALLEATGDVAPAPRTSGRRRRKPANPSAGYRVAELYLERRGNR 59

Query: 37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           I GNIY  KV  V   L+AAFVD G  ++GFL   EI
Sbjct: 60 SIVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEI 97


>gi|330888633|gb|EGH21294.1| ribonuclease G [Pseudomonas syringae pv. mori str. 301020]
          Length = 485

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVAKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI  +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILISIT-PMESRVAVVENGVLQEVHVEHTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|303229385|ref|ZP_07316175.1| putative Ribonuclease G [Veillonella atypica ACS-134-V-Col7a]
 gi|302515921|gb|EFL57873.1| putative Ribonuclease G [Veillonella atypica ACS-134-V-Col7a]
          Length = 475

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 233/457 (50%), Gaps = 7/457 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D        + E    ++ +    + ++ +  N + +   D+ G     +  +  ++  I
Sbjct: 19  DEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              +   Q +LVQ+VKEE   KGA VT  +SLAGR+ VL+P  S+G  IS+KIT+    +
Sbjct: 79  LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-ESIR 136

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
              +      V  G G I+RTA A  +  EI RD +YL R W +V +    + +   +Y 
Sbjct: 137 AQLQELAAPYVKEGCGFIIRTAAAKASADEIGRDMDYLWRTWQHVLKRFKVAKSGTDLYS 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           + +   R +RD   +++ EIIV  + G     D +     S    V ++ D  PIF  + 
Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409
           IE QL+ L   ++ LPS G + I+ TEAL   DVNS   T +    +  A   N EAA+E
Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLRD+ G+IVVDFIDM++K++ + + K L    K D+ +  V  IS+ GL+EM+R
Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLSAQAKLDKMKTVVCGISSLGLVEMTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528
           +R R  +       C  C G GY+ S  +V + I+R + E         N+ +  H +V 
Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKSNLEIEAHPEVA 436

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            YL    ++ + +  A  G SI++V+  +++ + + +
Sbjct: 437 QYLT---KSVLDDLGASIGRSISIVVNPQISREGYSL 470



 Score = 80.8 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 4  KMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          K+L++    EE R+ V+ +  ++ +   E   +  +  ++Y   V  V   +QAAFVD G
Sbjct: 3  KILVNVMR-EEIRMAVIDEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61

Query: 63 GNRHGFL 69
          G+++ +L
Sbjct: 62 GSQNAYL 68


>gi|298488476|ref|ZP_07006507.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157101|gb|EFH98190.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 485

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQLGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|330875172|gb|EGH09321.1| ribonuclease G [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 485

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQ+RLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQMRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|124007392|ref|ZP_01692099.1| ribonuclease, Rne/Rng family [Microscilla marina ATCC 23134]
 gi|123987225|gb|EAY26965.1| ribonuclease, Rne/Rng family [Microscilla marina ATCC 23134]
          Length = 519

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/570 (23%), Positives = 249/570 (43%), Gaps = 70/570 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+N+++I+++   E R+V+L++ RV E   E +      G+IYL  V +V   L AAF+D
Sbjct: 1   MSNELIINSTQKGE-RIVLLKNKRVVEYHIEEKDNNFTVGDIYLGTVKKVVQGLNAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL +L++ P +  +    +  L K              +V +          +
Sbjct: 60  VGYDKDAFLHYLDLGPKFSSLNTFTKDVLAK-------------KNVPYKLQDFKLKPEI 106

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            ++  I++      +  +      + +    +              +Y +     +   +
Sbjct: 107 NKLGKISSIFSRNNQVLVQVIKEPISTKGPRLSCE------LSLAGRYLVLVPFSSSVNI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +E   +   +          S + P  +    I R      +   L    + L 
Sbjct: 161 SKKITNKEERQRLQRL---------MSSIKP--ANFGIIVRTNAEGKEVAELDRDLKSL- 208

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                       + +W N  +   ++     +  E +     +R
Sbjct: 209 ----------------------------VEIWVNGMKSLRDAKPRDKIIGEMDRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +    I+V  +  + + K +++ + P   +IV+ +     IF    IE QL  L  
Sbjct: 241 DMLNESFDSIVVDEKTIHGDIKSYIRKIAPDKEKIVKLHAGKTKIFEHYQIEKQLKLLFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V+LP  GY+II  TEAL  IDVNSG +S  E   E+TAL  N+EAA+EIARQLRLRD+
Sbjct: 301 KSVSLPKGGYLIIEHTEALHVIDVNSGNKSNVEQDQENTALNVNMEAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDM++ +N R V + +KE LK+DR++  V  ++ FGL++++RQR+R  +  +
Sbjct: 361 GGIIIIDFIDMKKVENKRKVYEFVKEQLKQDRSKSTVLPLTKFGLMQITRQRVRPEMNIT 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY-----LLNQ 534
           T + C  C G G + +   V+  I  ++E  L +     + +  H  +  Y     L+++
Sbjct: 421 TRETCASCGGTGKVEATILVSDLIESNLEYVLNKQNEKKVTIALHPYLYAYFTKGGLMSK 480

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFY 564
           +   +     ++G  + ++    L    F 
Sbjct: 481 RVRWLF----KYGRWVKLLKDSALPLASFK 506


>gi|21221057|ref|NP_626836.1| hypothetical protein SCO2599 [Streptomyces coelicolor A3(2)]
 gi|6983741|emb|CAB75380.1| conserved hypothetical protein SCC88.10c [Streptomyces coelicolor
            A3(2)]
          Length = 1340

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 146/568 (25%), Positives = 253/568 (44%), Gaps = 9/568 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 633  GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 692

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L   W+
Sbjct: 693  SMTG-ISRKLPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 749

Query: 274  NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            ++++ A +   S AP L+Y E ++  R +RD++ +D S+++VSG+  ++    ++  + P
Sbjct: 750  DIQKKAKSGGSSNAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAP 809

Query: 331  SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              A  + ++     +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T
Sbjct: 810  DLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFT 869

Query: 391  -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             +   +E+T  + NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +
Sbjct: 870  GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGR 929

Query: 450  DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-QSSVALSILRSVE 508
            DR + QV  +++ GL++M+R+R+   +LES ++ C +C G G I       +        
Sbjct: 930  DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSSAGGGGGKR 989

Query: 509  EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
                +  A     H H  V             + E+   V+  V   + L    F  ++ 
Sbjct: 990  RKRARAGAEQPHEHEHEAVAGIETGPTPEQEADTESETEVAAEVAEPVALPAPDFSADEE 1049

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQDNIVSEESTGV 627
                A            +  +  +         A     K+ES++ +             
Sbjct: 1050 LYSSAAEAEAAATRGRGRRRASRRASAPAGAPRAAKGEAKAESVKAEAAPAGAPTAQDVT 1109

Query: 628  IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +R+   R  RR PA +        + +        +      P+                
Sbjct: 1110 VREEVERPVRREPAAEVLAEPAAVEDAVSGAPAPAAAAETAAPAPEEAAPKGRTRRRATR 1169

Query: 688  ENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +    +  P        +   +   V +
Sbjct: 1170 KVSAPAGSPEGAEAAVLTVPETSTTVSE 1197



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   H E T++ VL D  + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 564 ERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 623

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 624 KGRNAVLYAGEV 635


>gi|320330024|gb|EFW86011.1| ribonuclease G [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 485

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQ+RLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQMRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|257482239|ref|ZP_05636280.1| ribonuclease G [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627554|ref|ZP_06460508.1| ribonuclease G [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646982|ref|ZP_06478325.1| ribonuclease G [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320322507|gb|EFW78600.1| ribonuclease G [Pseudomonas syringae pv. glycinea str. B076]
 gi|330868267|gb|EGH02976.1| ribonuclease G [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330987077|gb|EGH85180.1| ribonuclease G [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011520|gb|EGH91576.1| ribonuclease G [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 485

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|34540961|ref|NP_905440.1| ribonuclease [Porphyromonas gingivalis W83]
 gi|34397276|gb|AAQ66339.1| ribonuclease, Rne/Rng family [Porphyromonas gingivalis W83]
          Length = 504

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/430 (28%), Positives = 216/430 (50%), Gaps = 4/430 (0%)

Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
                  ++++  + +   S   +     ++  I +V+K  Q +LVQI KE    KG  +
Sbjct: 63  DAQQKMMEMMTKSKSIPSLSKVPLGSDLPKEGKIADVLKAGQQILVQIAKEPISTKGPRL 122

Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
           T  LS AGR  VL+P   K     +  +     +  + I      P    VI+RT+   +
Sbjct: 123 TAELSFAGRSLVLVPFADKVSVSQKIRSAEERARLRQLIIS--IKPKNFSVIIRTSAEGK 180

Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316
              E+ ++ + L+R WD+  +  L + AP +VYEE +     +RD +      IIV+ + 
Sbjct: 181 RASELDKELQSLLRRWDDNIKKLLRAKAPSIVYEEASRTLGLLRDNFNPSYQSIIVNDKA 240

Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
                 D+++L+ P    IV+ Y+   PIF    I  Q+ +L    VT  S  Y+II QT
Sbjct: 241 FRDSLSDYVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQT 300

Query: 377 EALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435
           EA+  +DVNSG  +R    ++ TA+  N+ AAEE+ARQLRLRD+ G+IVVDFIDM E ++
Sbjct: 301 EAMHVVDVNSGNRSRGSTEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQH 360

Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
            + + + + + +  DRAR  +  +S FG+++++RQR+R +++  T + C  C G G + S
Sbjct: 361 RQQLYEHMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVES 420

Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVI 554
                  +   V + + ++     ++H H  V  YL      + + +++ ++   I ++ 
Sbjct: 421 SILFTDQLEEKVAKMVTEHQVKQFVLHVHPYVAAYLKKGFLSSILKKWKLKYAKGIKLIP 480

Query: 555 GIELADKLFY 564
              L    + 
Sbjct: 481 DESLGFLDYT 490



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
          + VL D ++ EL  E  +     G+IYL KV +V P L AAFVD G  +  FL +L++ 
Sbjct: 1  MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFLHYLDLG 59


>gi|330895283|gb|EGH27621.1| ribonuclease G [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330958028|gb|EGH58288.1| ribonuclease G [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 485

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++I+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|305666097|ref|YP_003862384.1| Ribonuclease G [Maribacter sp. HTCC2170]
 gi|88707531|gb|EAQ99774.1| Ribonuclease G [Maribacter sp. HTCC2170]
          Length = 515

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 126/564 (22%), Positives = 222/564 (39%), Gaps = 62/564 (10%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           N+ LI  S  +     +L++ ++ EL  E ++     G+I+LAKV +    L AAFV+ G
Sbjct: 2   NRELIVRSSSDAVDFALLKEGKLTELHKEEDNNDFSVGDIFLAKVRKPVTGLNAAFVNVG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             +  FL + ++ P                     +        V+ G +   +  +   
Sbjct: 62  YEKDAFLHYHDLGPQ-------------------LSTMLKFIKQVSTGKLRDYSLKNFPL 102

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
              I       +      +    +        G           +Y +      R  +  
Sbjct: 103 EKDIDKHGSINDVIKSNQSLLVQIVKEPISTKGPRISSELSLAGRYLVMVPFSERVSVSQ 162

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           +I  +E  ++   +   +   G   ++                                 
Sbjct: 163 KIGSKEEKDRLKRLVKSIKPKGFGVII--------------------------------- 189

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
                  RT    +   E+ +D E L+  W  + +    +  P  V  E N     +RD+
Sbjct: 190 -------RTVAEGKKVAELDKDLENLLDKWSAMCKKLYKAPTPSKVLVELNRASSILRDI 242

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
           +    + I V  E  Y + KD+++ + P    IV+ Y    PIF + GIE Q+ +     
Sbjct: 243 FNDSFTGIQVDDETLYNQVKDYVQEIAPGKESIVKLYSSSVPIFEKFGIERQIKTSFGRT 302

Query: 363 VTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
            ++    Y+II  TEAL  IDVNSG RS +    EDTAL+ N+ +A EIARQLRLRD+ G
Sbjct: 303 ASMSKGAYLIIEHTEALHVIDVNSGNRSNKAKNQEDTALEVNMLSASEIARQLRLRDMGG 362

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +IV+DFIDM +  + R +   L++ +K DRA+ ++   S FGL++++RQR+R  +   TT
Sbjct: 363 IIVIDFIDMVKAPHRRKLFDHLRDEMKDDRAKHKILPPSKFGLVQITRQRVRPEMNIKTT 422

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRATIV 540
           +      G   + +   +   I   +E+ L        I ++ H  +  Y+     +   
Sbjct: 423 EQDPNRSGM-EVEAPIVLIDKINVDLEKLLKGPKKDSKITLNLHPFIAAYITKGFPSIRS 481

Query: 541 EYEARFGVSINVVIGIELADKLFY 564
           ++       I +          + 
Sbjct: 482 KWFMEHKKWIKIQPRDAYTYLEYR 505


>gi|113971798|ref|YP_735591.1| ribonuclease G [Shewanella sp. MR-4]
 gi|117922078|ref|YP_871270.1| ribonuclease G [Shewanella sp. ANA-3]
 gi|113886482|gb|ABI40534.1| RNAse G [Shewanella sp. MR-4]
 gi|117614410|gb|ABK49864.1| RNAse G [Shewanella sp. ANA-3]
          Length = 502

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 90  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +  K       V    G I+RTA     + E+ +D  +L R+W
Sbjct: 150 SSHVGVSQRIEQEEERSRLKKITL--PFVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 207

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 208 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQAFAQEFMPEI 266

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 267 ADKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM   ++   V   L  +L KDR 
Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSDEHKTRVLNSLNSALAKDRV 386

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C+  G +++  +V+  I R +     
Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVLCGECPACQSTGSMKTVETVSYEIFREIIRLNR 446

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L   +   + E E   G  I +      +   + +
Sbjct: 447 AYDADEFLLYCSPAVYNSLSGDESHLVAELEVYIGKRIRLQNEPMYSQHKYDV 499


>gi|82701498|ref|YP_411064.1| ribonuclease [Nitrosospira multiformis ATCC 25196]
 gi|82409563|gb|ABB73672.1| RNAse G [Nitrosospira multiformis ATCC 25196]
          Length = 483

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 120/410 (29%), Positives = 215/410 (52%), Gaps = 1/410 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
               + +       I++++   + +LVQ++K+  G KGA ++T +S+AGR  V +P  S 
Sbjct: 72  DIWRLRQSEDADKPIEQLLYEGKNILVQVIKDSIGAKGARLSTQVSIAGRLLVYLPQVSH 131

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R       +   +++   L      G I+RT   + ++ +++ D EYL +LW ++
Sbjct: 132 IGISQRIEDETERKSLREKLKHLLPAAEEGGFIIRTVAEAASEQDLQTDIEYLHKLWRDI 191

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +E +L S  P L+Y++ NL  R +RD    D + I+V   + +++   F ++ M +    
Sbjct: 192 KEKSLIS-QPALLYQDLNLSFRVLRDFISDDTTRILVDSRETFQKMATFARVYMANVVER 250

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F   G+E +++      V L S GY+II+QTEAL +IDVN+G        
Sbjct: 251 LDHYAGERPLFELYGVEDEIEKALARRVDLKSGGYLIIDQTEALTTIDVNTGGFIGVRSF 310

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEAA+ IARQLRLR+L G+I++DFIDME  ++  +V  + K+SL KDR  + 
Sbjct: 311 DDTIFKTNLEAAQVIARQLRLRNLGGIIIIDFIDMESAEHQNAVLSEFKKSLMKDRTHMT 370

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           V   +  GL+EM+R+R R S+     + C  C+G   +R+  ++   ILR +     Q+ 
Sbjct: 371 VNGFTALGLVEMTRKRTRESLAHILCETCPTCQGRSKVRTAQTMCYEILRELLRESRQFD 430

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A    +     V+   L+++  ++ +        I++ +      + + +
Sbjct: 431 AREFRIVASQQVIDLFLDEESQSLAQLADFIAKPISLQVEGTYTQEQYDL 480



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +  +ETRV V+    V+EL  E      I GNIY  +V RV P +Q+AFVD
Sbjct: 1  MSCEILINVT-PQETRVAVVEHGAVQELHIERTSNCGIVGNIYNGRVIRVLPGMQSAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   +I
Sbjct: 60 IGLERAAFLHLADI 73


>gi|317485998|ref|ZP_07944853.1| rne/Rng family ribonuclease [Bilophila wadsworthia 3_1_6]
 gi|316922771|gb|EFV44002.1| rne/Rng family ribonuclease [Bilophila wadsworthia 3_1_6]
          Length = 913

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 149/401 (37%), Positives = 236/401 (58%), Gaps = 5/401 (1%)

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
             P K ++   IQ+V+K  Q +LVQ+VKE  G+KGA +TT+LSLAGR+ VL P   +   
Sbjct: 490 HEPTKGRKYPPIQKVLKPGQEVLVQVVKEPNGSKGAFLTTWLSLAGRFLVLTPGQEQIG- 548

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           ISRK+ +  +R  L+E+ RGLE   G+G I+RT  A  +K  +++D  +L R+W ++R+ 
Sbjct: 549 ISRKVEDGEERNRLRELIRGLEPGEGLGAIVRTVSAGTSKTTLQKDLSFLKRVWKDIRKR 608

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR- 337
           A     P L+Y+E  L  R++RD    D+SE+ V   +     ++   LL P    +V  
Sbjct: 609 ATTEKVPSLIYQEPGLASRSVRDYLSDDVSEVWVDNAETAEAIREMASLLFPRKGDLVHL 668

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
             +    ++   G+  Q++ +H  EV +PS G ++ +QTEAL++ID+NSG+   +   E 
Sbjct: 669 YEKHDKTLWEHFGLLNQIEQVHSREVLMPSGGRLVFDQTEALMAIDINSGKIGGKTNFEA 728

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
            A +TN+EAA  IARQLRLRD+ G IV+DFI+M + ++ R VEK+L+ ++K DRAR  +G
Sbjct: 729 MAFRTNMEAATAIARQLRLRDIGGQIVIDFIEMRDPEHCREVEKELRNAMKGDRARHDIG 788

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
            +S+FGLL++ RQR  SS +  + + C +CKG G  R+    ++  LR +   +    A 
Sbjct: 789 KMSSFGLLQIVRQRTGSSAISISMETCPHCKGTGQRRNMEWQSVQTLRDLHRAMRSAAAA 848

Query: 518 ---NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
                     +++ LYLLN KR  +   E  F + +++ I 
Sbjct: 849 GQTEYAHSVDAELGLYLLNHKRERLSLMEKEFHIRLDIRIE 889



 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 47/82 (57%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KML+     +   VV+  D  V E   E  H+ +I+GNIY   +  ++ +LQAAFV+YG
Sbjct: 410 RKMLVSVLPGDMVEVVLTEDGSVREYYVEMTHQAKIRGNIYKGVINNIDTNLQAAFVNYG 469

Query: 63  GNRHGFLPFLEIHPDYYQIPFS 84
             ++GFL   E+HP+YY  P  
Sbjct: 470 NVKNGFLQIDEVHPEYYLQPHE 491


>gi|302185327|ref|ZP_07262000.1| ribonuclease G [Pseudomonas syringae pv. syringae 642]
          Length = 485

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKESGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|77457069|ref|YP_346574.1| RNAse G [Pseudomonas fluorescens Pf0-1]
 gi|77381072|gb|ABA72585.1| ribonuclease G [Pseudomonas fluorescens Pf0-1]
          Length = 492

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 219/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 91  ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 149

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E      AP
Sbjct: 150 ERLKQVVSDCVAKEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQINEQIKTIGAP 209

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 210 SVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 269

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++I+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 270 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 329

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQ+RLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 330 AATAIARQMRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 389

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C+ C+G G +++  ++   I R +      Y A    V  + 
Sbjct: 390 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQ 449

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E   G +I   +    + + + +
Sbjct: 450 KVVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 489


>gi|66047386|ref|YP_237227.1| ribonuclease E and G [Pseudomonas syringae pv. syringae B728a]
 gi|63258093|gb|AAY39189.1| Ribonuclease E and G [Pseudomonas syringae pv. syringae B728a]
 gi|330950284|gb|EGH50544.1| ribonuclease G [Pseudomonas syringae Cit 7]
 gi|330969673|gb|EGH69739.1| ribonuclease G [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 485

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++I+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|330807539|ref|YP_004352001.1| ribonuclease G [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375647|gb|AEA66997.1| ribonuclease G [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 485

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+   +KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  ISALVHEGQSLVVQVTKDPIVSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD +         P
Sbjct: 143 ERLKQVVSDCVEKEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIAAQIKTIATP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 SVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C+ C+G G +++  +V   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQATGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E EA  G +I   +    + + + +
Sbjct: 443 KVVDRLLDEESGNVAELEAFIGRTIRFQVETMYSQEQYDV 482


>gi|295111730|emb|CBL28480.1| ribonuclease, Rne/Rng family [Synergistetes bacterium SGP1]
          Length = 503

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 225/421 (53%), Gaps = 5/421 (1%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q ++VQ+ K    NKGA VT  +SL GRY VL+P+  +   +SR+I +  +R+ L+  
Sbjct: 87  ENQEIVVQVTKTAIKNKGARVTPRISLPGRYLVLVPDGGEAG-VSRRIVDEEERRRLRHF 145

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           AR L+     GVI+RTA     +  +  D E L+ LW  +   A    AP L+Y++  L+
Sbjct: 146 ARELKGD-DFGVIIRTAAEGVDEETLAADVESLLALWREIEHDAELQAAPCLLYKDRGLL 204

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            R +RD     + EII+   +  R   +++  L  +    V  YE   PIF   G+E ++
Sbjct: 205 GRVLRDEVHGSVDEIILDSAEEMRHVNEYVATLYKTDRPQVSLYEGAVPIFEYYGVEAEI 264

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           +   + +V L S  Y++I  TEAL  IDVN+G+   +  +  T L TNLEAA+E+ARQLR
Sbjct: 265 EQALERKVWLRSGAYLVIEHTEALTVIDVNTGKYVGDLDMRHTTLATNLEAADEVARQLR 324

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR + G++VVDFIDME +++ + +  +L+E  + DR+R +V +++  GL+E++R+R R  
Sbjct: 325 LRSIGGIVVVDFIDMEFEEDRKKLLDRLEEVFQLDRSRARVFSMTQLGLVELTRKRGRPD 384

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
           +    T+ C +C   G++  + ++ALSI R + +      A  +++  +S V  Y+ +  
Sbjct: 385 LRSVMTRGCPFCNDNGWVLREDTLALSIKRFLRKIAQTNRAEALLLQANSMVAQYVRD-- 442

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
              +  +E    V I V    + A   + IE    + A+ +  H++    ++      + 
Sbjct: 443 -TYLAMWERELDVKILVAGMPDFAWSKYRIELQGTLSAVEHRAHQLERREESSIVVHRVP 501

Query: 596 C 596
            
Sbjct: 502 A 502



 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query: 2  ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            K++ D    EETRV +L   R+ ++  E    +Q  G IY A+V  V P + AAFV  
Sbjct: 8  ERKIIADTREDEETRVAILEGGRLADVFIERMWDRQKAGEIYKARVESVLPGINAAFVTI 67

Query: 62 GGNRHGFLPFLEIH 75
          G  R+ FL   ++H
Sbjct: 68 GEGRNAFLYLNDVH 81


>gi|237798586|ref|ZP_04587047.1| ribonuclease G [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021439|gb|EGI01496.1| ribonuclease G [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 485

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIAEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++I+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AAIAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|94968495|ref|YP_590543.1| ribonuclease [Candidatus Koribacter versatilis Ellin345]
 gi|94550545|gb|ABF40469.1| ribonuclease, Rne/Rng family [Candidatus Koribacter versatilis
            Ellin345]
          Length = 1031

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 140/487 (28%), Positives = 241/487 (49%), Gaps = 3/487 (0%)

Query: 81   IP-FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
            IP  +D +    E      +      +          +   EE       +   E  S  
Sbjct: 545  IPQVADIEEDFHEHQAEDFEYSNGNGEAVEAAEGEFEEEGEEEGDGEEEEAVAGETGSKP 604

Query: 140  SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
                D        + G P     + +    I +++K  Q +LVQI KE  G KGA +T++
Sbjct: 605  RRQFDRGRRGRRGRRGGPPMKNMQSRNTPLISDLLKEGQEILVQIAKEPIGKKGARITSH 664

Query: 200  LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
            ++L GR+ V MP  +      +  ++   ++ LK I          G I+RTA A+  + 
Sbjct: 665  IALPGRFLVYMPTVNHVGVSRKIASDEERQR-LKRIVSSERENGHGGFIVRTAAANVKED 723

Query: 260  EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
            E++ D  +L  LW  ++  +  S +P L+Y + NL++R +RD    D + I V  E  Y 
Sbjct: 724  ELRADIRFLKHLWSEIKGRSDKSKSPALIYHDLNLVERVLRDQVTSDFTTIWVDNESEYE 783

Query: 320  EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
                F     PS  R ++ Y    P+F   GI+ +++   + +V L S GY++INQTEAL
Sbjct: 784  RVLRFASRFQPSLVRRIKLYTKNTPLFEEFGIQEEINKALKAKVWLKSGGYIVINQTEAL 843

Query: 380  VSIDVNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
            V+ID+N+G+   +    EDT ++TN++A +EI RQ+RLRDL G+IV+DFIDM+E+KN + 
Sbjct: 844  VAIDINTGKYVGKTTRLEDTIVKTNVDAIKEIVRQIRLRDLGGIIVIDFIDMDERKNRQK 903

Query: 439  VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            V   L+E+LK DRA  +V   ++FGL+ ++R+R++ S+  +    C+YC+  G+++S  +
Sbjct: 904  VMAALEEALKSDRAPSKVLQFNDFGLVAITRKRVKQSLERTLGTPCSYCEATGFVKSVPT 963

Query: 499  VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
            +   I   V +        ++ +  + +V   +       + E+E   G ++ V     +
Sbjct: 964  MCSEIYTEVRKLAKHLDGKDVTIRVNPEVAKAIKENNGKLVQEFEELTGKTVIVKSDPAM 1023

Query: 559  ADKLFYI 565
              + F I
Sbjct: 1024 HQEHFDI 1030



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++ + +S+  ETRV ++ D+++ E+ +E E++  + G+IY  +VTRV P +Q+AFVD
Sbjct: 1  MNKELYV-SSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G  R  FL   +
Sbjct: 60 VGLERDAFLYVSD 72


>gi|169632552|ref|YP_001706288.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter baumannii SDF]
 gi|169151344|emb|CAP00060.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter baumannii]
          Length = 488

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 75  NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ I   ++        VI+RTA     + EI +D  YL +LW+ 
Sbjct: 135 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 193

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  ++ ++I V   + + + ++F+   +P+   
Sbjct: 194 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 253

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGCS 313

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 373

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 5  MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 64 IGLSRTAFLHINDM 77


>gi|330443823|ref|YP_004376809.1| ribonuclease G [Chlamydophila pecorum E58]
 gi|328806933|gb|AEB41106.1| ribonuclease G [Chlamydophila pecorum E58]
          Length = 508

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 145/439 (33%), Positives = 248/439 (56%), Gaps = 3/439 (0%)

Query: 128 NFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKE 187
           N  +       IS   +     E +    PE + ++ + +  I+E++K    +LVQ+VKE
Sbjct: 59  NIDERENGFIHISDILENSKKFEQMFDADPETLAQEQQEEAPIEELLKLDSPVLVQVVKE 118

Query: 188 ERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGV 247
             GNKGA +T+ +S+ GRY VL+PN+     +SRKI +   R++LK++ R  E+P  MG+
Sbjct: 119 PIGNKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDLQMREHLKQLIRSFEMPQNMGL 177

Query: 248 ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDI 307
           I RTA  + +   +  +   L+  W N+ E   ++    L+YEE +++K+A+     ++ 
Sbjct: 178 ICRTASTTASTEALINEAHDLLLTWKNILEKYHSTDDSCLLYEETDILKKAVITCIDQNY 237

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             +++     Y++ K  +K   P     +  Y D  P+F R  IE ++D   + ++ L S
Sbjct: 238 KRLLIDDYATYQKCKRMLKKYAPESTVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSS 297

Query: 368 RGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
            GY+  ++TEA+ +IDVNSGRST+ E  +E+T +Q NLEA EEIARQLRLR++ GL+++D
Sbjct: 298 GGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEATEEIARQLRLRNVGGLVIID 357

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDM+ +KN R V ++LKE +K D AR  + ++S FGL+EM+RQR R S++++    C Y
Sbjct: 358 FIDMKSRKNQRRVLERLKEHMKYDGARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPY 417

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL-LNQKRATIVEYEAR 545
           C G+  I++  SV + I RS+++ +      N+ +  H ++  Y+ L      ++    +
Sbjct: 418 CNGSASIKTPESVVIEIERSLKKAINHREHLNLCLVVHPEIASYMKLEGDDKELITSAKQ 477

Query: 546 FGVSINVVIGIELADKLFY 564
               + +     L    + 
Sbjct: 478 LKAKLQITTSDSLHLNHYQ 496


>gi|28871603|ref|NP_794222.1| ribonuclease G [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213966626|ref|ZP_03394777.1| ribonuclease G [Pseudomonas syringae pv. tomato T1]
 gi|301383136|ref|ZP_07231554.1| ribonuclease G [Pseudomonas syringae pv. tomato Max13]
 gi|302063724|ref|ZP_07255265.1| ribonuclease G [Pseudomonas syringae pv. tomato K40]
 gi|302133802|ref|ZP_07259792.1| ribonuclease G [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28854855|gb|AAO57917.1| ribonuclease G [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213928476|gb|EEB62020.1| ribonuclease G [Pseudomonas syringae pv. tomato T1]
 gi|330877206|gb|EGH11355.1| ribonuclease G [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330963995|gb|EGH64255.1| ribonuclease G [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331016672|gb|EGH96728.1| ribonuclease G [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 485

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + +       P
Sbjct: 143 ERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGDQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++I+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCVGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|169794877|ref|YP_001712670.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter baumannii AYE]
 gi|260557243|ref|ZP_05829459.1| ribonuclease G [Acinetobacter baumannii ATCC 19606]
 gi|169147804|emb|CAM85667.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter baumannii AYE]
 gi|260409349|gb|EEX02651.1| ribonuclease G [Acinetobacter baumannii ATCC 19606]
          Length = 488

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 75  NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ I   ++        VI+RTA     + EI +D  YL +LW+ 
Sbjct: 135 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 193

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  ++ ++I V   + + + ++F+   +P+   
Sbjct: 194 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 253

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 373

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 5  MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 64 IGLSRTAFLHINDM 77


>gi|288575350|ref|ZP_06393651.1| cytoplasmic axial filament protein [Neisseria mucosa ATCC 25996]
 gi|288567891|gb|EFC89451.1| cytoplasmic axial filament protein [Neisseria mucosa ATCC 25996]
          Length = 396

 Score =  244 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 201/393 (51%)

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
           ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P         R   +       
Sbjct: 1   MLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGISQRIEDDAERNSLR 60

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           + +   L   A  G I+RT   + T  +++ D  YL ++W++++E A       L+Y++ 
Sbjct: 61  ERLTNLLPEDACHGYIIRTNAENATDEQLQSDIHYLTKVWEHIQEQAKIQPPETLLYQDL 120

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
            L  R +RD++  D  +I+V   + +R    F +  +      +  ++   P+F    +E
Sbjct: 121 PLSLRVLRDMFSLDTQKILVDSTENHRRMTRFAEQYVHGALGRIELFKGERPLFETHNVE 180

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
            ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T  +TNLEA   IAR
Sbjct: 181 QEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLEACHTIAR 240

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           +LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   ++ GL+E++R+R 
Sbjct: 241 ELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGFTSLGLVELTRKRS 300

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           R ++ +   + C  C+G G +++  ++   I R +     +Y   +  +    +V+   L
Sbjct: 301 RENLSQILCEPCPSCQGRGRLKTPQTICYEIQREIVREARRYDVQSFRILAAPNVIDLFL 360

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +++  ++       G  I++ +      + + I
Sbjct: 361 DEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 393


>gi|70728282|ref|YP_258031.1| ribonuclease G [Pseudomonas fluorescens Pf-5]
 gi|68342581|gb|AAY90187.1| ribonuclease G [Pseudomonas fluorescens Pf-5]
          Length = 485

 Score =  244 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 219/400 (54%), Gaps = 5/400 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++   Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD +        AP
Sbjct: 143 ERLKQVVSDCVAQEGIKEAGGFILRTAAEGAGADEIMMDIRYLRRLWDQIGAQIKTIGAP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
           +++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 NVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQKTTVFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++++  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C+ C+G G +++  +V   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLANQ 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            VV  LL+++   + E E   G +I   +    + + + +
Sbjct: 443 KVVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 482



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|262371811|ref|ZP_06065090.1| ribonuclease G [Acinetobacter junii SH205]
 gi|262311836|gb|EEY92921.1| ribonuclease G [Acinetobacter junii SH205]
          Length = 486

 Score =  244 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 123/412 (29%), Positives = 212/412 (51%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   Q L VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 73  NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 132

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R        + L+ I   ++        VI+RTA     +  I +D  YL +LW+ 
Sbjct: 133 GVSQRIEQEEERDR-LRGIIEHIQTEHKLPGSVIVRTAAEGVDEASIAQDMCYLSKLWEF 191

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++        P L++EE  L +R +RDL   + ++I V   + + +  +F+   +PS   
Sbjct: 192 IQRKQKEVSTPELIFEELPLPQRIVRDLASDETAKIYVDSREIHGKLSEFVHEFVPSIEN 251

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 252 RLIHYPGEKPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 311

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E ++   V ++ ++ L++D A+ 
Sbjct: 312 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAEHRAEVMRQFEKMLERDHAKT 371

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           ++  +S  GL+EM+R+R R S+     + C  C+G GY+++  +V   I R +  Y   +
Sbjct: 372 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCYEIFREILRYARAF 431

Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 432 DSKSGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 483



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MA ++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 3  MAEELLINVT-PMECRVALIENGTVNELFVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 61

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 62 IGLSRTAFLHINDM 75


>gi|188532445|ref|YP_001906242.1| ribonuclease G [Erwinia tasmaniensis Et1/99]
 gi|188027487|emb|CAO95334.1| Ribonuclease G [Erwinia tasmaniensis Et1/99]
          Length = 489

 Score =  244 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    KK      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK +        G G I+RTA     + E+  D  +L RLW
Sbjct: 136 ASHVGVSQRIESEAERNR-LKAVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E    +     +Y E  L +R +RD     +  I +     +    +F    +P  
Sbjct: 194 TKVIERKKRNKTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEHLLEFTGEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+     + C  CKG G +++  +V   I+R +     
Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCRVCKGRGTLKTVETVCYEIMREIVRVHH 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y +   +V+    V   L + +   + E E   G  + V +      + F +
Sbjct: 434 AYDSDRFLVYASPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486


>gi|51246433|ref|YP_066317.1| cytoplasmic axial filament protein (ribonuclease G) [Desulfotalea
           psychrophila LSv54]
 gi|50877470|emb|CAG37310.1| related to cytoplasmic axial filament protein (ribonuclease G)
           [Desulfotalea psychrophila LSv54]
          Length = 518

 Score =  244 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 128/404 (31%), Positives = 227/404 (56%), Gaps = 2/404 (0%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
               +   I++++   Q ++VQ+ K+  G KGA +T +++L  R  V +P T     +SR
Sbjct: 113 NPRTQGIRIEDLLSEGQNIIVQVTKDPIGTKGARLTCHITLPCRNLVFIPQTDHIG-VSR 171

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +   R+ LK+    +    G+G I+RT     T+ E++ D E+L+ LWD +     +
Sbjct: 172 KIDDETLREELKKQIEEIRPE-GVGFIVRTVAEHATREELEADMEFLLILWDEIIVKISH 230

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
           + +P L++E+ ++  R++RD +  D+  +I+  EK Y++   F+K   P     +  Y D
Sbjct: 231 AKSPELIHEDLDITLRSVRDFFTIDVDRLIIDDEKDYKKLLGFVKTFAPQLHNKISLYTD 290

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
           P P+F    IEV++    + +V L S GY+II  TEAL  IDVN+GR   ++ + DT  +
Sbjct: 291 PIPLFDAYNIEVEIAKAIEKKVWLRSGGYIIIESTEALSVIDVNTGRFVGKNNLNDTIFK 350

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TN+EAA+EIA QLRLR++ G+I++DFIDME  ++   + +  +E++KKD++R+ +  +S 
Sbjct: 351 TNIEAAKEIADQLRLRNIGGIIIIDFIDMESAEHREQLYETFQEAVKKDKSRINILKLSE 410

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
           FGL++M+R+R   ++ +   + C YC G G I+S+ ++   I R +  +  +     + +
Sbjct: 411 FGLVQMTRKRSSENLYQLMCESCHYCSGEGMIKSRRTICYDIFRKLSRHTNKNHGTTVTL 470

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             H  +   L N++  T+   E   G  I V    +L  + + I
Sbjct: 471 RVHPRIADILENEEELTLGTVEKDIGRRIIVASSKDLHIEKYEI 514



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+  +LI+ S   E R+ ++ +  + E   +   +K + GNIY  KV RV P +QAAFVD
Sbjct: 22 MSTDILIN-SRSYEVRLALVENGNLSEFHMQRPTEKGLMGNIYKGKVVRVLPGMQAAFVD 80

Query: 61 YGGNRHGFLPFLEI 74
           G  R GFL   ++
Sbjct: 81 IGLERTGFLYVDDV 94


>gi|284040810|ref|YP_003390740.1| ribonuclease, Rne/Rng family [Spirosoma linguale DSM 74]
 gi|283820103|gb|ADB41941.1| ribonuclease, Rne/Rng family [Spirosoma linguale DSM 74]
          Length = 520

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 126/566 (22%), Positives = 229/566 (40%), Gaps = 63/566 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+N+++I ++   + R+ +L++ R+ E   E        G++YL  V ++   L AAFVD
Sbjct: 1   MSNELVISSTQKGD-RIALLQNKRLLEYHEEELDSSFTVGDLYLGTVKKLSSGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  + GFL + ++ P+                         +  DV    VT    +  
Sbjct: 60  VGHEKDGFLHYQDLGPN-------------------INSLNKLVKDVIAKRVTTGRLNQN 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +    I    +  +  +  +     +        G           +Y +     +   L
Sbjct: 101 QLEPVIDKIGKIDKVLTKNAPILVQIVKEPISTKGPRLSCDISIAGRYLVLVPFSDGVNL 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I      ++   +          S L P       I R +    D + L    +   
Sbjct: 161 SKKITDRAERSRLMRL---------MSSLKP--KNFGVIVRTVAQDKDVEELDRDLQHSL 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                               +    +     +  E N     +R
Sbjct: 210 AKWD-----------------------------QAIKSLSEAKPRDRILGEMNRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  +    I V   + + E +D++  + P   +IV+ +     +F   G+E QL SL  
Sbjct: 241 DMLNESFESITVDTRESFDEIRDYIHTIAPDKEKIVKLHTGKTKVFEALGLEKQLKSLFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V+LP  GY+II  TEAL  IDVNSG +S  E   E TA+  N EAA+EIARQLRLRD+
Sbjct: 301 RSVSLPGGGYLIIEHTEALHVIDVNSGNKSNSEEDQEATAISVNREAAKEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IV+DFIDM++ +N + ++  +++ +K +R++  +  ++ FGL++++RQR+R  +   
Sbjct: 361 GGIIVIDFIDMKKAENKKLLQDIMRDEMKPERSKFTILPLTKFGLMQITRQRVRPEMNIV 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV-VLYLLNQKRAT 538
           T +VC  C G G I++   V   I  +++  L +     I +  +  +   Y        
Sbjct: 421 TREVCPTCGGTGTIQASVLVTDVIENNLDYILTKQNERGISISMNPFLYAYYTKGIYSKQ 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
           + ++  ++   + +V    L    F 
Sbjct: 481 M-QWYMKYKTWVKIVKDTSLGIVNFK 505


>gi|213157796|ref|YP_002320594.1| ribonuclease G [Acinetobacter baumannii AB0057]
 gi|215482425|ref|YP_002324607.1| Ribonuclease G(RNase G) (Cytoplasmic axial filamentprotein)
           [Acinetobacter baumannii AB307-0294]
 gi|239502359|ref|ZP_04661669.1| ribonuclease G and E [Acinetobacter baumannii AB900]
 gi|301511189|ref|ZP_07236426.1| ribonuclease G, endoribonuclease G [Acinetobacter baumannii AB058]
 gi|193078229|gb|ABO13189.2| ribonuclease G endoribonuclease G [Acinetobacter baumannii ATCC
           17978]
 gi|213056956|gb|ACJ41858.1| ribonuclease G [Acinetobacter baumannii AB0057]
 gi|213987481|gb|ACJ57780.1| Ribonuclease G(RNase G) (Cytoplasmic axial filamentprotein)
           [Acinetobacter baumannii AB307-0294]
 gi|323519288|gb|ADX93669.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter baumannii TCDC-AB0715]
          Length = 469

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 56  NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 115

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ I   ++        VI+RTA     + EI +D  YL +LW+ 
Sbjct: 116 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 174

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  ++ ++I V   + + + ++F+   +P+   
Sbjct: 175 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 234

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 235 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 294

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 295 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 354

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 355 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 414

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 415 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 466



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          + ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD G +R  FL   ++
Sbjct: 1  MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDM 58


>gi|188995255|ref|YP_001929507.1| putative ribonuclease E [Porphyromonas gingivalis ATCC 33277]
 gi|188594935|dbj|BAG33910.1| putative ribonuclease E [Porphyromonas gingivalis ATCC 33277]
          Length = 519

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 124/430 (28%), Positives = 216/430 (50%), Gaps = 4/430 (0%)

Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
                  ++++  + +   S   +     ++  I +V+K  Q +LVQI KE    KG  +
Sbjct: 78  DAQQKMMEMMTKSKSIPSLSKVPLGSDLPKEGKIADVLKAGQQILVQIAKEPISTKGPRL 137

Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
           T  LS AGR  VL+P   K     +  +     +  + I      P    VI+RT+   +
Sbjct: 138 TAELSFAGRSLVLVPFADKVSVSQKIRSAEERARLRQLIIS--IKPKNFSVIIRTSAEGK 195

Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316
              E+ ++ + L+R WD+  +  L + AP +VYEE +     +RD +      IIV+ + 
Sbjct: 196 RASELDKELQSLLRRWDDNIKKLLRAKAPSIVYEEASRTLGLLRDNFNPSYQSIIVNDKA 255

Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
                 D+++L+ P    IV+ Y+   PIF    I  Q+ +L    VT  S  Y+II QT
Sbjct: 256 FRDSLSDYVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQT 315

Query: 377 EALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435
           EA+  +DVNSG  +R    ++ TA+  N+ AAEE+ARQLRLRD+ G+IVVDFIDM E ++
Sbjct: 316 EAMHVVDVNSGNRSRGSTEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQH 375

Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
            + + + + + +  DRAR  +  +S FG+++++RQR+R +++  T + C  C G G + S
Sbjct: 376 RQQLYEHMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVES 435

Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVI 554
                  +   V + + ++     ++H H  V  YL      + + +++ ++   I ++ 
Sbjct: 436 SILFTDQLEEKVAKMVTEHQVKQFVLHVHPYVAAYLKKGFLSSILKKWKLKYAKGIKLIP 495

Query: 555 GIELADKLFY 564
              L    + 
Sbjct: 496 DESLGFLDYT 505



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M ++++ID    +E  + VL D ++ EL  E  +     G+IYL KV +V P L AAFVD
Sbjct: 1  MNSELVIDVK-PKEVSMAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVD 59

Query: 61 YGGNRHGFLPFLEIH 75
           G  +  FL +L++ 
Sbjct: 60 VGYKKDAFLHYLDLG 74


>gi|312792692|ref|YP_004025615.1| ribonuclease, rne/rng family [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179832|gb|ADQ40002.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 571

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 232/477 (48%), Gaps = 14/477 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162
           +D    ++ I  + S   V  I     E     + +A  N     N     G        
Sbjct: 20  EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79

Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+P+T      
Sbjct: 80  DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPSTEYVGVS 139

Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
            R  +    ++      + +     P GMG+I+RTA   +++  +K + E+L  +W  ++
Sbjct: 140 KRIESEEERQR-----LKEIACRLKPEGMGLIVRTAAEGKSEEILKSELEFLKNMWGRIK 194

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           + +  S AP L+Y++ +L+ +A+RD++   +   +++  K Y +  +F+    PS    V
Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIMEFLSSYAPSLKSKV 253

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             +     IF    IE +L       V L S GY++I++TEAL  IDVN+G+   +  + 
Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T L+TNLEAA EIARQLRLRD+ G+I++DFIDM+  ++ + V   LKE+LK+D+ +  V
Sbjct: 314 ETILKTNLEAAHEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             I+  GL+EM+R++IR  +       C YC+G G I S  SVA  +L+ +E Y      
Sbjct: 374 VDITPLGLVEMTRKKIRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
               V  H+ V   L   +   I E E ++   I V     +    F I        
Sbjct: 434 DKFFVEIHTKVCEILRKGEIDRIKELEQKYKKKIYVKASSNIHINKFTICPVKDEDH 490



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   +TRV VL D  + E+  E E  + I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G  ++ FL   +++        +YY+I
Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87


>gi|56459496|ref|YP_154777.1| ribonuclease G [Idiomarina loihiensis L2TR]
 gi|56178506|gb|AAV81228.1| RNase G [Idiomarina loihiensis L2TR]
          Length = 489

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 118/411 (28%), Positives = 203/411 (49%), Gaps = 2/411 (0%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
              +      K Q  I E++   Q ++VQ+VK+  G KGA +TT ++L  RY V MP + 
Sbjct: 78  DGDDLPRPDEKPQQSITELVHQGQHIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPKSD 137

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
                 R        +            +    I+RTA    +   ++ D ++L RLW+ 
Sbjct: 138 HVGVSQRIEEGEERERL--RQLAEEVSKSDGKFIVRTAAEGASDQSLRGDADFLFRLWEK 195

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++    +     ++YE+ NL  R +RD   ++I  I V  +  +   K F +  +P   +
Sbjct: 196 IKARKKSQRKVGMLYEDLNLSCRVLRDFVGEEIERIRVDSKVTFDTLKVFTQDFIPELTK 255

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
           ++  Y    PIF    +E ++       V L S G +II+QTEA+ ++D+N+G       
Sbjct: 256 VLEYYTGDRPIFDLFDVENEMQRALDRRVDLKSGGSLIIDQTEAMTTVDINTGAFVGHRN 315

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +E+T   TN+EA + IARQLRLR+L G+I++DFIDM+++++ R V   L+++L KDRA+ 
Sbjct: 316 LEETIFNTNIEATQSIARQLRLRNLGGIIIIDFIDMQDEEHKRRVLHSLEQALGKDRAKT 375

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            +   ++ GL+EM+R+R R S+       C  C G G +++  +V   I+R +      Y
Sbjct: 376 TINGFTSLGLVEMTRKRTRESLEHVLCSECPVCLGRGSMKTVETVCYEIMREIVRVHKAY 435

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            A   +V+  + V   LLN++   + E E      I +        + F +
Sbjct: 436 EADKFVVYASAQVSEALLNEESHALAELELFVSRQIKIQTEPLYNQEQFDV 486


>gi|91794678|ref|YP_564329.1| ribonuclease G [Shewanella denitrificans OS217]
 gi|91716680|gb|ABE56606.1| RNAse G [Shewanella denitrificans OS217]
          Length = 496

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 123/413 (29%), Positives = 195/413 (47%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 D  K+      I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP+
Sbjct: 84  HTECVADTEKRNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPD 143

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +   +      V A  G I+RTA     + E+ +D  +L R+W
Sbjct: 144 SSHVGVSQRIEVEAERNR--LKNITLPYVDADGGFIIRTAAEGVGEDELAQDAAFLRRVW 201

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R IRD    ++  I V   + Y E   F +  MP  
Sbjct: 202 AKVSERR-KRKGVTLLYQDLALPVRIIRDFVGTELDHIQVDSSQTYDELSLFAQEFMPEI 260

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P  IF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 261 ADKIEHYSGPAAIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 320

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM+  ++   V   L+ +L KDR 
Sbjct: 321 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMQNAEHKSRVLASLQSALSKDRV 380

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   S  GL+EM+R+R R S+       C  C G G +++  +V+  I R +     
Sbjct: 381 KTSISGFSGLGLVEMTRKRTRESLEHVVCGECPSCHGTGSMKTIETVSYEIFRELIRLNS 440

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L       + E     G  + +      A   + +
Sbjct: 441 TYAADEFLIYCSPAVYNSLHGDDSHLLAELGVYIGKRLRLQSEPMYAQNKYDV 493


>gi|184159348|ref|YP_001847687.1| ribonuclease G and E [Acinetobacter baumannii ACICU]
 gi|301347345|ref|ZP_07228086.1| ribonuclease G, endoribonuclease G [Acinetobacter baumannii AB056]
 gi|301594367|ref|ZP_07239375.1| ribonuclease G, endoribonuclease G [Acinetobacter baumannii AB059]
 gi|332853440|ref|ZP_08434759.1| ribonuclease G [Acinetobacter baumannii 6013150]
 gi|332870577|ref|ZP_08439319.1| ribonuclease G [Acinetobacter baumannii 6013113]
 gi|332874211|ref|ZP_08442133.1| ribonuclease G [Acinetobacter baumannii 6014059]
 gi|183210942|gb|ACC58340.1| Ribonuclease G and E [Acinetobacter baumannii ACICU]
 gi|322509260|gb|ADX04714.1| Ribonuclease G and E [Acinetobacter baumannii 1656-2]
 gi|332728646|gb|EGJ60014.1| ribonuclease G [Acinetobacter baumannii 6013150]
 gi|332732137|gb|EGJ63406.1| ribonuclease G [Acinetobacter baumannii 6013113]
 gi|332737570|gb|EGJ68475.1| ribonuclease G [Acinetobacter baumannii 6014059]
          Length = 484

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 71  NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 130

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ I   ++        VI+RTA     + EI +D  YL +LW+ 
Sbjct: 131 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 189

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  ++ ++I V   + + + ++F+   +P+   
Sbjct: 190 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 249

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 250 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 309

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 310 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 369

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 429

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 430 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 481



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 60 IGLSRTAFLHINDM 73


>gi|302872528|ref|YP_003841164.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575387|gb|ADL43178.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 571

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 145/477 (30%), Positives = 232/477 (48%), Gaps = 14/477 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162
           +D    ++ I  + S   V  I     E     + +A  N     N     G        
Sbjct: 20  EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79

Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+PNT      
Sbjct: 80  DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPNTEYVGVS 139

Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
            R       ++      + +     P GMG+I+RTA   +++  +K + E+LM +W  +R
Sbjct: 140 KRIEVEDERQR-----LKEIACRLKPEGMGLIIRTAAEGKSEEILKSELEFLMNVWKKIR 194

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
             +  S AP L+Y++ +L+ +A+RDL+   +   +++  K Y +  +F+    PS    V
Sbjct: 195 LKSCQS-APVLLYKDYDLVFKAVRDLFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             +     IF    IE +L       V L S GY++I++TEAL  IDVN+G+   +  + 
Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+  ++ + V   LKE+LK+D+ +  V
Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             I+  GL+EM+R+++R  +       C YC+G G I S  SVA  +L+ +E Y      
Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
               V  ++ V   L   +   I E E ++   I V     +    F I        
Sbjct: 434 DKFFVEVNTKVCEILRKGEIDRIKELEQKYKKKIYVKASSNIHINKFTICPIKDEDH 490



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   +TRV VL D  + E+  E E  + I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G  ++ FL   +++        +YY+I
Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87


>gi|119899901|ref|YP_935114.1| putative ribonuclease [Azoarcus sp. BH72]
 gi|119672314|emb|CAL96228.1| putative ribonuclease [Azoarcus sp. BH72]
          Length = 503

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 114/410 (27%), Positives = 203/410 (49%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                 +  +    I+ ++   Q L+VQ++K+  G KGA ++T +S+AGR  V +P    
Sbjct: 91  DIWSDRQNGEAAKPIERILAEGQSLVVQVLKDPIGTKGARLSTQISIAGRLLVYLPQEKH 150

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R           + + R +      G I+RT   S +  E+  D  YL +LW+ +
Sbjct: 151 IGISQRIENETEREALRERLTRLVPADEPGGFIVRTMAESASDDELAADIAYLRKLWNEI 210

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           R  +  +  P L++E+  L +R +RDL  ++ + I V   + +++   F     P    +
Sbjct: 211 RNNSTGAFPPKLLHEDLGLGQRVLRDLVNEETTRIRVDSRENFQKLAAFAAEYSPKVLPL 270

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F    IE ++       V L S GY+II+QTEA+ ++DVN+G        
Sbjct: 271 LEHYTGERPLFDIFNIEEEIQKALARRVDLKSGGYLIIDQTEAMTTVDVNTGGFVGARNF 330

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT  +TNLEA + IARQLRLR+L G+I++DFIDME  ++   V ++ +++L +D  ++ 
Sbjct: 331 DDTIFKTNLEATQAIARQLRLRNLGGIIIIDFIDMENVEHREMVLEEFRKALARDHTKMS 390

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           +   +  GL+EM+R+R R S+     + C  C G G +++  +VA  +LR +     Q+ 
Sbjct: 391 INGFTALGLVEMTRKRTRESLAHLLCEACPTCGGRGEVKTARTVAYEVLRELLREARQFN 450

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A    V    +V+   L+++  ++          I++        + F I
Sbjct: 451 AREFRVLAAPNVIDLFLDEESQSLAMLSDFIDKKISLHPEASYTQEQFDI 500



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ + LI+ +  +ETRV ++    V+EL  E    + I GNIYL KV RV P +Q+AF++
Sbjct: 20 MSIEFLINFT-PQETRVAIVEQGVVQELHVERTASRGIVGNIYLGKVVRVLPGMQSAFIE 78

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  R  FL   +I  D
Sbjct: 79 IGLERTAFLHVADIWSD 95


>gi|294101612|ref|YP_003553470.1| ribonuclease, Rne/Rng family [Aminobacterium colombiense DSM 12261]
 gi|293616592|gb|ADE56746.1| ribonuclease, Rne/Rng family [Aminobacterium colombiense DSM 12261]
          Length = 499

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 234/472 (49%), Gaps = 3/472 (0%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           D     V I     L ++     + ++   E   +  + V+  +        +       
Sbjct: 12  DPEEMRVAILEKGKLVDIFVERMWERQKTGEIYKARVDSVLPGIHAAFVNLGDGRNAFLY 71

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
                   +K    ++VQ+VK  R NKGA VT+ +SL GRY VL+P+  +     R I  
Sbjct: 72  LNDAKGINLKPNVEVVVQVVKAARKNKGARVTSRISLPGRYLVLVPDGQETGVSKRIIDE 131

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++      +  +   G GVI+RTA     +  +  D   L+ LW  +R  A    AP
Sbjct: 132 EERKRLRFLAKKLRDEGEGYGVIIRTAAEGVDEETLTHDLHTLVDLWREIRHDAQIQAAP 191

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y +  L+ R +RD    D+SEI++  E+   + KD++  ++      V  YE   PI
Sbjct: 192 CLIYRDIGLVGRVLRDELTGDVSEIVIDSEEECHKVKDYLNRILEGQEPEVSLYEGSSPI 251

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   GIE +L++    +V L S  Y+II+ TEAL  IDVN+G+   +  +  T L TNLE
Sbjct: 252 FDFYGIERELETALDRKVWLRSGAYLIIDHTEALTVIDVNTGKYVGDTDLRHTVLDTNLE 311

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+EIARQLRLR + G++V+DFIDME +++ + + ++L E  +KDR R ++  +S  GL+
Sbjct: 312 AADEIARQLRLRAIGGIVVIDFIDMEYEEDRQKLLQRLDEVFQKDRYRARIFGVSQLGLV 371

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E++R+R R  V    T+ C +C G G++  + SVA+ I R + +  L   A  +++ THS
Sbjct: 372 EITRKRARPDVRSVMTRGCPFCGGYGWVLKEDSVAMHIKRFLRKVSLSNKADAMLLETHS 431

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
            +  Y+ +     +  +E      I +    E A   + ++   P+  +   
Sbjct: 432 VIAQYIAD---TYLAVWEEELQRRIFIAAAPEFAWNKYRLDMQGPIDVVERR 480



 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 1  MA-NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M   K++ +    EE RV +L   ++ ++  E   ++Q  G IY A+V  V P + AAFV
Sbjct: 1  MTDRKIIANTLDPEEMRVAILEKGKLVDIFVERMWERQKTGEIYKARVDSVLPGIHAAFV 60

Query: 60 DYGGNRHGFLPFLE 73
          + G  R+ FL   +
Sbjct: 61 NLGDGRNAFLYLND 74


>gi|152999051|ref|YP_001364732.1| ribonuclease G [Shewanella baltica OS185]
 gi|151363669|gb|ABS06669.1| ribonuclease, Rne/Rng family [Shewanella baltica OS185]
          Length = 502

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 90  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +   +      V    G I+RTA     + E+ +D  +L R+W
Sbjct: 150 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 207

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 208 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQSFAQEFMPEI 266

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 267 AEKIEHYSGPAPIFDLYDVENEIQRALCRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM    +   V   L  +L KDR 
Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMVTADHKARVLSSLTSALSKDRV 386

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V+  + R +     
Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 446

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L   +   I E E   G  I +      +   + +
Sbjct: 447 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 499


>gi|213024720|ref|ZP_03339167.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 344

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 168/297 (56%), Gaps = 2/297 (0%)

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+
Sbjct: 14  PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 73

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TR   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R+VE +L+E++++
Sbjct: 74  TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 133

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+  IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE
Sbjct: 134 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 193

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568
             L+     +       +  YLLN+KR  +   E R  GV   +V   ++    + + + 
Sbjct: 194 EALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRV 253

Query: 569 SPVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
              +      + +     +A +     E   +     P   + ++ D+       E 
Sbjct: 254 RKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEP 310


>gi|294139078|ref|YP_003555056.1| ribonuclease G [Shewanella violacea DSS12]
 gi|293325547|dbj|BAJ00278.1| ribonuclease G [Shewanella violacea DSS12]
          Length = 500

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/396 (30%), Positives = 193/396 (48%), Gaps = 3/396 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I ++++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP +S      R      + 
Sbjct: 105 IAQLVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHIGVSQR--IESEEV 162

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +   +      V    G I+RTA  S  + E+ +D  +L R+W  V E         L+Y
Sbjct: 163 RARLKGLTQPFVDEDGGFIIRTAAESAGEQELVQDAAFLRRVWAKVSERR-KRRGVSLLY 221

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++  L  R +RD    ++ +I V     + E + F +  MP  A  +  Y  P PIF   
Sbjct: 222 QDLALPVRIVRDFVGTELDQIRVDSSMTFDELQTFTQEFMPEIADKIEHYSGPAPIFDLY 281

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E ++      +V L S GY+II+QTEA+ ++D+N+G       +EDT   TNLEA + 
Sbjct: 282 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEDTIFNTNLEATQA 341

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM +  + + V   L+ +L  DR +  +   S  GL+EM+R
Sbjct: 342 IARQLRLRNLGGIIIIDFIDMLDADHQKRVLNSLELALSMDRVKTNISGFSGLGLVEMTR 401

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+       C  C G G +++  +V+  I R +      Y A   IV+    V  
Sbjct: 402 KRTRESLEHVVCGECPICLGTGSLKTVETVSYEIFREIIRLDRSYKADEFIVYCSPAVHH 461

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            L       + E     G  + +      A   F +
Sbjct: 462 SLTGDDSHLVAELGVYIGKRVKLKNEPMYAQNKFDV 497


>gi|256820306|ref|YP_003141585.1| ribonuclease, Rne/Rng family [Capnocytophaga ochracea DSM 7271]
 gi|315223335|ref|ZP_07865194.1| ribonuclease G [Capnocytophaga ochracea F0287]
 gi|256581889|gb|ACU93024.1| ribonuclease, Rne/Rng family [Capnocytophaga ochracea DSM 7271]
 gi|314946666|gb|EFS98655.1| ribonuclease G [Capnocytophaga ochracea F0287]
          Length = 514

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 131/568 (23%), Positives = 227/568 (39%), Gaps = 67/568 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S        +LRD R+ EL  E +      G+I LAKV +    L AAFV+
Sbjct: 1   MDKELII-RSGSSYVDFALLRDGRLIELHKEEDTNGLGVGDIMLAKVRKPIQGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P       +     LK                             
Sbjct: 60  VGHEKDAFLHYHDLGPQ-----LASLLKFLK----------------------------- 85

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                + +   +           D+  N    +   P         +  I         +
Sbjct: 86  ----WVISGKLKDFSLKDFPLEPDIDKNGSVAETLKPNQPILVQIVKEPIST---KGPRI 138

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             ++    R       +  +S++                 +        +  K       
Sbjct: 139 SSELSIAGRYLVLVPFSDRISIS----------------QKIEGKAEKERLRK--LLQGI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G GVI+RT    +   E+ +D + L   W  +      +V P  V  E N     +R
Sbjct: 181 KPKGFGVIVRTVAEGKKVAELDKDLQSLFNRWVLMCRKIQKAVFPSKVMSEVNKTGAILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I V  E+ Y + K +++ + P    IV+ Y    PIF +  IE Q+ +   
Sbjct: 241 DMFNDSFTGIHVDNEQLYEQIKKYVQEIAPEKENIVKLYHSSVPIFEKFHIERQIKTAFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419
             V++P   Y++I  TEAL  IDVNSG  + ++  ++ TAL  NL AA EIARQLRLRD+
Sbjct: 301 RTVSMPKGAYLVIEHTEALHVIDVNSGNHSNKNNDQETTALSVNLIAATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM   +N R +   L+  + +DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMGNSENRRVLFDHLRNEMAEDRAKHKILPPSKFGLIQITRQRVRQELNIK 420

Query: 480 TTKVCTYCKGAGY--IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
           T +     +G     I     + + +   ++E   +     I+++ H  +  YL     +
Sbjct: 421 TKEENPSKEGEIEAPIVLIDKINIELESIIKEEAYKGR---IVLNAHPFIAAYLTKGLFS 477

Query: 538 TIV-EYEARFGVSINVVIGIELADKLFY 564
           +I  ++  ++   I ++         + 
Sbjct: 478 SIRFKWFLKYKRWIKILPRDAYTYLEYR 505


>gi|282857425|ref|ZP_06266658.1| ribonuclease G [Pyramidobacter piscolens W5455]
 gi|282584710|gb|EFB90045.1| ribonuclease G [Pyramidobacter piscolens W5455]
          Length = 547

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 142/492 (28%), Positives = 240/492 (48%), Gaps = 6/492 (1%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           D     V I  +  L E+     +  +   E   +    V+  +     G  +       
Sbjct: 61  DPEEARVAIVENGRLSELFIERMWECQKSGEIYKARVESVLPGMNAAFVGLGDGRNGFLY 120

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
                   ++    +LVQ+VK  R NKGA VT  +SL GRY VL+P   +   +S++I  
Sbjct: 121 LNDARGVKVQQNGEVLVQVVKTARKNKGARVTARISLPGRYLVLVPG-GRDVGVSKRIVK 179

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             +R  LKE  R L+   G GVILRTA        +  D + L +LW ++ + A    AP
Sbjct: 180 EEERMRLKETIRSLDTV-GYGVILRTASEGVDADALADDLKRLKKLWRDIEDSAAKQTAP 238

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL-MPSYARIVRQYEDPHP 344
            L+Y++  L+ R +RD    ++S+I+V  ++ Y    D+++          +  +    P
Sbjct: 239 CLLYKDMGLVGRVLRDELSSEVSQIVVDNQEEYDRVADYLERYRAAEKTPTLSFHRSNIP 298

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F    +E ++D+L   +V L S  Y++++QTEAL  IDVN+G+ T    + +T L TNL
Sbjct: 299 LFEYYDVEKEIDALLDNKVWLKSGAYLVVDQTEALTVIDVNTGKYTGGRNLRETVLATNL 358

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAAEEIA QL+LR + G++VVDFIDME +++ +++  KL E    DR RV+V  IS  GL
Sbjct: 359 EAAEEIAWQLKLRSIGGIVVVDFIDMEPEEDKKALLAKLDEVFAADRCRVRVYGISPLGL 418

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R R+ +    T+ C  C     +  + S+AL + R + +  L   A  ++V  +
Sbjct: 419 VEMTRKRARADLRSVLTRPCPLCGSGSRVLKEDSLALMLKRFIRKVFLSGRAEAVLVDVN 478

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
             V  Y     +  +  +E  FG  I +   +++  + F ++    + ++ +      S 
Sbjct: 479 ESVAAYAA---QVYLSSWEETFGRKIFLRGRLDMPLEKFRLDLQGSLSSVESRVELTRSR 535

Query: 585 SQAPSYDKNIEC 596
                  +  + 
Sbjct: 536 GDTSVVYRTTDP 547



 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 5   MLI--DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +LI  +    EE RV ++ + R+ EL  E   + Q  G IY A+V  V P + AAFV  G
Sbjct: 53  ILILANTIDPEEARVAIVENGRLSELFIERMWECQKSGEIYKARVESVLPGMNAAFVGLG 112

Query: 63  GNRHGFLPFLE 73
             R+GFL   +
Sbjct: 113 DGRNGFLYLND 123


>gi|284799610|ref|ZP_06390242.1| cytoplasmic axial filament protein [Neisseria subflava NJ9703]
 gi|284797520|gb|EFC52867.1| cytoplasmic axial filament protein [Neisseria subflava NJ9703]
          Length = 396

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 200/393 (50%)

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
           ++   Q +LVQ++K+    KGA ++T +SLAGR+ V +P         R   +       
Sbjct: 1   MLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGISQRIEDDAERSSLR 60

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           + +   L   A  G I+RT   + +  +++ D  YL ++W+++++ A       L+Y++ 
Sbjct: 61  ERLNNLLPENACHGYIIRTNAENASDAQLQSDINYLTKVWEHIQKQAKIQPPETLLYQDL 120

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
            L  R +RD++  D  +I+V   + +R    F +  +      +  ++   P+F    IE
Sbjct: 121 PLSLRVLRDMFSLDTHKILVDSTENHRRMTQFAEQYVQGALGRIELFKGERPLFETHNIE 180

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
            ++    Q  V L    Y+II  TEA+ +IDVN+G        ++T  +TNLEA   IAR
Sbjct: 181 QEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLEACHTIAR 240

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           +LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   ++ GL+E++R+R 
Sbjct: 241 ELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGFTSLGLVELTRKRS 300

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           R ++ +   + C  C+G G +++  +V   I R +     +Y      +    +V+   L
Sbjct: 301 RENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAFRILAAPNVIDLFL 360

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +++  ++       G  I++ +      + + I
Sbjct: 361 DEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 393


>gi|304411557|ref|ZP_07393170.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
 gi|307306667|ref|ZP_07586409.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
 gi|304350084|gb|EFM14489.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
 gi|306910635|gb|EFN41064.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
          Length = 488

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +   +      V    G I+RTA     + E+ +D  +L R+W
Sbjct: 136 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 194 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFTELQSFAQEFMPEI 252

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 253 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM    +   V   L  +L KDR 
Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMMTADHKARVLSSLTSALSKDRV 372

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V+  + R +     
Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 432

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L   +   I E E   G  I +      +   + +
Sbjct: 433 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 485


>gi|160873644|ref|YP_001552960.1| ribonuclease G [Shewanella baltica OS195]
 gi|217971732|ref|YP_002356483.1| ribonuclease G [Shewanella baltica OS223]
 gi|160859166|gb|ABX47700.1| ribonuclease, Rne/Rng family [Shewanella baltica OS195]
 gi|217496867|gb|ACK45060.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223]
 gi|315265873|gb|ADT92726.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678]
          Length = 488

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +   +      V    G I+RTA     + E+ +D  +L R+W
Sbjct: 136 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 194 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQSFAQEFMPEI 252

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 253 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM    +   V   L  +L KDR 
Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMMTADHKARVLSSLTSALSKDRV 372

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V+  + R +     
Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 432

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L   +   I E E   G  I +      +   + +
Sbjct: 433 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 485


>gi|299140822|ref|ZP_07033960.1| ribonuclease G [Prevotella oris C735]
 gi|298577788|gb|EFI49656.1| ribonuclease G [Prevotella oris C735]
          Length = 524

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 241/566 (42%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D  + E   E                       QA+F  
Sbjct: 1   MTSEVVIDVRE-KEISIALLEDKNLVEYQNEPR---------------------QASF-S 37

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                  I  +  + L+   N    D     D   H        +S 
Sbjct: 38  VG-----------------NIYAAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +     N  ++       +     +                   +   +Q+V+   Q +
Sbjct: 81  AKYLKQVNSDRKRLYPFSKAQRLPDLK------------------KDGSVQQVLSVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +T  LS AGR+ VL+P   K    S+  +     +   +      
Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVSVSSKIKSGEERAR--LKQLIYSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L + W++           P LV+EE       +
Sbjct: 181 KPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKTQKQQKRPQLVFEETGRAIAML 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E+ Y E K ++ L+ P  A IV+ Y    PIF    +  Q+ S  
Sbjct: 241 RDLFNPSFENIYVNNEEVYNEVKHYLTLIAPEKASIVKHYTGKVPIFDNFNVTKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              +      Y+II  TEAL  +DVNSG  ++    ++  AL  NL AA+E+ARQLRLRD
Sbjct: 301 GKTINYKHGAYLIIEHTEALHVVDVNSGNRSKSENGQEANALDVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +  + C  C G G IRS       + R +   + +       +H H  V  Y+     + 
Sbjct: 421 NVEETCPTCNGTGKIRSSILFTDQLERKIARLVNKIGIAKFYLHVHPYVAAYINKGFISL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             +++ ++G  ++++   +LA   + 
Sbjct: 481 RRKWQLKYGFGVHIIPSQKLAFLQYE 506


>gi|281425614|ref|ZP_06256527.1| ribonuclease, Rne/Rng family [Prevotella oris F0302]
 gi|281400201|gb|EFB31032.1| ribonuclease, Rne/Rng family [Prevotella oris F0302]
          Length = 524

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 242/566 (42%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D  + E   E                       QA+F  
Sbjct: 1   MTSEVVIDVRE-KEISIALLEDKNLVEYQNEPR---------------------QASF-S 37

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                  I  +  + L+   N    D     D   H        +S 
Sbjct: 38  VG-----------------NIYAAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 80

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +     N  ++       +     +                   +   +Q+V+   Q +
Sbjct: 81  AKYLKQVNSDRKRLYPFSKAQRLPDLK------------------KDGSVQQVLSVGQEV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +T  LS AGR+ VL+P   K    S+  +     +   +      
Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVSVSSKIKSGEERAR--LKQLIYSI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L + W++           P LV+EE       +
Sbjct: 181 KPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKTQKQQKRPQLVFEETGRAIAML 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E+ Y E K ++ L+ P  A IV+ Y    PIF    +  Q+ S  
Sbjct: 241 RDLFNPSFENIYVNNEEVYNEVKHYLTLIAPEKASIVKHYTGKVPIFDNFNVTKQIKSSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              +      Y+II  TEAL  +DVNSG  ++    ++  AL  NL AA+E+ARQLRLRD
Sbjct: 301 GKTINYKHGAYLIIEHTEALHVVDVNSGNRSKSENGQEANALDVNLGAADELARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +  + C  C G G IRS       + R ++  + +       +H H  V  Y+     + 
Sbjct: 421 NVEETCPTCNGTGKIRSSILFTDQLERKIDRLVNKIGIAKFYLHVHPYVAAYINKGFISL 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             +++ ++G  ++++   +LA   + 
Sbjct: 481 RRKWQLKYGFGVHIIPSQKLAFLQYE 506


>gi|126642807|ref|YP_001085791.1| ribonuclease G endoribonuclease G [Acinetobacter baumannii ATCC
           17978]
          Length = 432

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 19  NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 78

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ I   ++        VI+RTA     + EI +D  YL +LW+ 
Sbjct: 79  GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 137

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  ++ ++I V   + + + ++F+   +P+   
Sbjct: 138 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 197

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 198 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 257

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 258 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 317

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 318 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 377

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 378 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 429



 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 54 LQAAFVDYGGNRHGFLPFLEI 74
          +QAAFVD G +R  FL   ++
Sbjct: 1  MQAAFVDIGLSRTAFLHINDM 21


>gi|293192372|ref|ZP_06609483.1| putative S1 RNA binding domain protein [Actinomyces odontolyticus
           F0309]
 gi|292820287|gb|EFF79281.1| putative S1 RNA binding domain protein [Actinomyces odontolyticus
           F0309]
          Length = 936

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 152/597 (25%), Positives = 257/597 (43%), Gaps = 45/597 (7%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 289 GEVNWDAVGMEGKPRRIEAALKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPGG 348

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       VP+G GVI+RTA    T+ +I+ D   L R W+
Sbjct: 349 SMMG-ISRKLPDKERARLKK--ILKAVVPSGSGVIVRTAAEGATEEQIRDDVARLTRQWE 405

Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           ++ +  +N+ + P L+  E  L  R +RD++ +D S++++ G   Y   K+++  L P  
Sbjct: 406 DIEKKRINTKSAPTLLRGEPELAVRVVRDIFNEDFSKLVIEGRDTYATVKEYVDELSPEL 465

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
           +  V Q+     +F    I+ QL      +V LPS G +II++TEA+  IDVN+G+    
Sbjct: 466 SDRVEQWVGTEDVFRAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKFIGA 525

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++++DF+DM  + N   V ++L E L +DR
Sbjct: 526 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 585

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL------- 504
            R QV  I++ GL++M+R+R+   ++E+ +  C  C+G G+I  Q  V  S         
Sbjct: 586 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSSSCEACEGRGFIVHQHPVETSGAEQPSKGS 645

Query: 505 ------------RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
                       R +E+      A   +    +                 + R   +++ 
Sbjct: 646 KGSKKQQKKAEPRRIEDNADHERAKEALSAIAAASTRKEEEGAAEEPAPTKKRRTRAVST 705

Query: 553 VI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA--------L 603
            +   E +         +P     +      ++  A    +    V +            
Sbjct: 706 EVKDPEASSVEQVAAPEAPADESASKPAAEKAEESATKRPRRRRRVAESTPLPELPVHLD 765

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
           LP P   S E       + E      + +    RRR +     A       +        
Sbjct: 766 LPEPVDHSDEPAAPTKDASEIQLPEHREKAPATRRRASRKAATASSEEPAEAP------- 818

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                 P         +        +   +  PVS P  E ++       +KTR  +
Sbjct: 819 -----APKKTRRRATAQTAVPEVQTDETPATAPVSAPVAEETSVQEPAAPRKTRRRR 870



 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ +L D  + E       +  + GNIYL +V  V PS++AAFVD G  R+  L   E++
Sbjct: 233 QIAILEDGLLVEHYVARRTQSSMVGNIYLGRVQNVLPSMEAAFVDVGRGRNAVLYAGEVN 292

Query: 76  PD 77
            D
Sbjct: 293 WD 294


>gi|262375787|ref|ZP_06069019.1| ribonuclease G [Acinetobacter lwoffii SH145]
 gi|262309390|gb|EEY90521.1| ribonuclease G [Acinetobacter lwoffii SH145]
          Length = 488

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/412 (30%), Positives = 217/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E+++  Q+L VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 75  NDMVWPRNQPTPNVFELLQPGQVLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ +   ++        VI+RTA     +  I +D  YL +LW+ 
Sbjct: 135 GVSQRIESEEERNR-LRSLIERIQAEHKLPGSVIVRTAAEGIEEEAIAQDMAYLAKLWEY 193

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++        P L++EE  L +R IRDL  ++ ++I V   + + + ++F++  +P+   
Sbjct: 194 IQRKQKIIAVPSLIFEELPLPQRVIRDLANEETAKIYVDSREIHAKLQEFVEEFVPNMKD 253

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    +E  L    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 254 RLLHYPGERPIFDLYNVEEDLQKALQTRVALKSGGYLMIDQTEAMATIDVNTGSYVGGRS 313

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E ++   V K+ +  L++D A+ 
Sbjct: 314 LEDTVFKTNMEATDVIARQLRLRNLGGIIIIDFIDMQEAQHREEVMKQFERMLERDHAKT 373

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           ++  +S  GL+EM+R+R R S+     + C  C+G GY+++  SV   I R +  Y   Y
Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAESVCYEIFREILRYARAY 433

Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            + +   V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 434 ESQSGFTVVAHLAVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M++++LI+ +   E RV ++ +  V EL  E   K+ + GN+Y  KV RV P +QAAFVD
Sbjct: 5  MSDELLINVT-PMECRVALIENGTVNELFVERTAKRGLVGNVYKGKVVRVLPGMQAAFVD 63

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 64 IGLSRTAFLHINDM 77


>gi|304414161|ref|ZP_07395529.1| ribonuclease G [Candidatus Regiella insecticola LSR1]
 gi|304283375|gb|EFL91771.1| ribonuclease G [Candidatus Regiella insecticola LSR1]
          Length = 489

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 135/478 (28%), Positives = 223/478 (46%), Gaps = 10/478 (2%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV------ 149
           A     A  ++    ++ I  +     V  I     +     I +A  D+  +       
Sbjct: 11  ASETRLAYLEEGVLQEIQIERETKRSIVGNIYQGHVKRVLPGIQAAFIDIGLDKAGFLHA 70

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++K    +       +   I + +   Q L+VQ+VK+  G+KGA +T  + L  RY V+
Sbjct: 71  KEIKPDRMKKNESHHFQSSDITQQVYQGQYLMVQVVKDLLGSKGALLTKDIRLPSRYLVM 130

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MP         R        +   +    L     +G I+RTA  +  + ++  D  +L 
Sbjct: 131 MPGVQHVGVSQRIKNEKERER--LKNIVTLSCDQTLGFIIRTAAENICEEKLSADVLFLQ 188

Query: 270 RLWDNVR-ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           RLW +V  +   N      +Y E  L  R +RD    ++  I++  +  Y +   F    
Sbjct: 189 RLWQDVLAKKKCNHAKIRQLYAEHPLSSRILRDFAVTELDHILIDSKLTYDQLLAFTDKC 248

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           MP     ++ Y    P+F +  +E ++      +V+L S GY+II+QTEAL  ID+N+G 
Sbjct: 249 MPEIKSKLQHYTASPPLFEKYNVENEIQHSLNRKVSLKSGGYLIIDQTEALTVIDINTGS 308

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           S   H +++T   TNLEA + IARQLRLR+L G+I++DFIDM  K++  SV   L+E+L 
Sbjct: 309 SVGYHNLDETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMRNKQHRESVLTSLQEALS 368

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST-TKVCTYCKGAGYIRSQSSVALSILRSV 507
           KDR +  +   S  GL+EM+R+R R S+ +      C  C+G G ++S  +V   ILR +
Sbjct: 369 KDRVQTTISGFSPLGLVEMTRKRTRESIGQVLLCHDCLTCQGKGRVKSAETVCYEILRKI 428

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            E      A+  +V     V   L +++   + E     G SI V I    + + F +
Sbjct: 429 VEMHRNNDANGFVVSASPSVGEKLQSKEFGALTEIVNFVGKSIKVQINPLYSPENFDV 486



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +LI+ +   ETR+  L +  ++E+  E E K+ I GNIY   V RV P +QAAF+D
Sbjct: 1  MTTTLLINIT-ASETRLAYLEEGVLQEIQIERETKRSIVGNIYQGHVKRVLPGIQAAFID 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G ++ GFL   EI PD
Sbjct: 60 IGLDKAGFLHAKEIKPD 76


>gi|152995965|ref|YP_001340800.1| ribonuclease [Marinomonas sp. MWYL1]
 gi|150836889|gb|ABR70865.1| ribonuclease, Rne/Rng family [Marinomonas sp. MWYL1]
          Length = 484

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 123/398 (30%), Positives = 211/398 (53%), Gaps = 1/398 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I + ++  Q L+VQ+ K+   +KGA +TT+LS+  RY V MP+ +      R       
Sbjct: 84  QIGDYLREGQSLVVQVTKDPISSKGARLTTHLSIPSRYLVYMPDQAHVGVSQRIEDEVER 143

Query: 229 RKNLKEIARGL-EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            +    ++  L +     G ILRTA     + EI  D ++L RLW +V+    N+ AP +
Sbjct: 144 ERLKSLVSEALTDADENSGYILRTAAERAREEEILADIKFLTRLWQSVKRRMQNAKAPSI 203

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YE+  L  R +RDL      +I +  ++ Y + + F +  +P     +  Y    PIF 
Sbjct: 204 IYEDLPLHLRTMRDLVGLTTEKIRIDSKENYAKLRAFAEDFIPELRDRIEYYPGERPIFD 263

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              +E ++      +V L S GY+++ QTE++ +IDVN+G       +E+T  +TNLEAA
Sbjct: 264 LYSVEDEIHKALDRKVQLKSGGYLLVEQTESMTTIDVNTGAFVGSRNLEETIYKTNLEAA 323

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
             I RQLRLR+L G+I++DFIDME++++ R V + L++ L  D A+ ++  +S  GL+EM
Sbjct: 324 TAIGRQLRLRNLGGIIIIDFIDMEDEEHKRQVLRMLEKVLDADHAKTKITGVSELGLVEM 383

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+ ++  + C  C+G+G +++  +V   + R +      Y +    V   S V
Sbjct: 384 TRKRTRESLGQTLCEPCRSCRGSGLVKTPETVCYEVFREILRADRAYNSQTYTVLAASTV 443

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V   L+++ A + E EA  G +I   +        + +
Sbjct: 444 VERFLDEESAAVAELEAFIGKTIRFQVDSVYTQDQYDV 481



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+  +LI+ +   E RV ++ +  ++E+  E   +K I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEDVLINVT-PMEIRVALVENGVLQEVYIERSSRKGIVGNIYQGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   E+
Sbjct: 60 IGLERAAFIHVSEV 73


>gi|312126864|ref|YP_003991738.1| ribonuclease, rne/rng family [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776883|gb|ADQ06369.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor hydrothermalis
           108]
          Length = 571

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 140/477 (29%), Positives = 233/477 (48%), Gaps = 14/477 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162
           +D    ++ I  + S   V  I     E     + +A  N     N     G        
Sbjct: 20  EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFS 79

Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+P+T      
Sbjct: 80  DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPSTEYVGVS 139

Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
            R  +    ++      + +     P GMG+I+RTA   +++  +K + E+L  +W  +R
Sbjct: 140 KRIESEEERQR-----LKEIACRIRPEGMGLIVRTAAEGKSEEVLKSELEFLKNMWKKIR 194

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           + +  S AP L+Y++ +L+ +A+RD++   +   +++  K Y +  +F+    PS    V
Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             +     IF    IE +L       V L S GY++I++TEAL  IDVN+G+   +  + 
Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+  ++ + V   LKE+LK+D+ +  V
Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             I+  GL+EM+R+++R  +       C YC+G G I S  S+A  +L+ +E Y      
Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSSCPYCEGTGKILSPESIAFKVLKEIEWYCKNKVE 433

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
               V  ++ V   L   +   I + E ++   I V     +    F I        
Sbjct: 434 DKFFVEMNTKVCEILRKGEVDRIKDLEQKYKKKIYVKASSNIHINKFTICPVKDEDH 490



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   +TRV VL D  + E+  E E  + I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G  ++ FL   +++        +YY+I
Sbjct: 60 IGQEKNAFLYLGDVNRLEFSDTDEYYEI 87


>gi|289771662|ref|ZP_06531040.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289701861|gb|EFD69290.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 1181

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 145/550 (26%), Positives = 249/550 (45%), Gaps = 9/550 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 471  GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 530

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L   W+
Sbjct: 531  SMTG-ISRKLPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 587

Query: 274  NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            ++++ A +   S AP L+Y E ++  R +RD++ +D S+++VSG+  ++    ++  + P
Sbjct: 588  DIQKKAKSGGSSNAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAP 647

Query: 331  SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
              A  + ++     +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T
Sbjct: 648  DLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFT 707

Query: 391  -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             +   +E+T  + NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +
Sbjct: 708  GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGR 767

Query: 450  DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-QSSVALSILRSVE 508
            DR + QV  +++ GL++M+R+R+   +LES ++ C +C G G I       +        
Sbjct: 768  DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSSAGGGGGKR 827

Query: 509  EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
                +  A     H H  V             + E+   V+  V   + L    F  ++ 
Sbjct: 828  RKRARAGAEQPHEHEHEAVAGIETGPTPEQEADTESETEVAAEVAEPVALPAPDFSADEE 887

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQDNIVSEESTGV 627
                A            +  +  +         A     K+ES++ +             
Sbjct: 888  LYSSAAEAEAAATRGRGRRRASRRASAPAGAPRAAKGEAKAESVKAEAAPAGAPTAQDVT 947

Query: 628  IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +R+   R  RR PA +        + +        +      P+                
Sbjct: 948  VREEVERPVRREPAAEVLAEPAAVEDAVSGAPAPAAAAETAAPAPEEAAPKGRTRRRATR 1007

Query: 688  ENYDVSIPPV 697
            +    +  P 
Sbjct: 1008 KVSAPAGSPE 1017



 Score = 93.5 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   H E T++ VL D  + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 402 ERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 461

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 462 KGRNAVLYAGEV 473


>gi|317503237|ref|ZP_07961295.1| ribonuclease G [Prevotella salivae DSM 15606]
 gi|315665650|gb|EFV05259.1| ribonuclease G [Prevotella salivae DSM 15606]
          Length = 539

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 243/566 (42%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D  + E   E                       QA+F  
Sbjct: 16  MTSEVVIDVRE-KEISIALLEDKNLVEYQNEPR---------------------QASF-S 52

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G                  I  +  + L+   N    D     D   H        +S 
Sbjct: 53  VG-----------------NIYAAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 95

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +     N  ++       +     +                   +   +Q+V+   Q +
Sbjct: 96  AKYLKQVNSDRKKLYPFSKAQRVPDLK------------------KDGSVQQVLTVGQEV 137

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +T  LS AGR+ VL+P   K    S+  +     +   +      
Sbjct: 138 LVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVSVSSKIKSGEERAR--LKQLIYSI 195

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299
            P   GVI+RT    +   E+  + + L + W++           P LV+EE       +
Sbjct: 196 KPKNCGVIVRTVAEGKRVAELDTEMKVLNKRWEDAILKTQKQQKRPQLVFEETGRAIAML 255

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RDL+      I V+ E+ Y E K ++ L+ P  A IV+ Y+   PIF    +  Q+ S  
Sbjct: 256 RDLFNPSFENIYVNNEEVYNEVKHYLTLIAPEKAGIVKLYKGKVPIFDNFNVTKQIKSSF 315

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418
              +      Y+II  TEAL  +DVNSG  T+    ++  AL  NL AA+EIARQLRLRD
Sbjct: 316 GKTINYKHGAYLIIEHTEALHVVDVNSGNRTKAQNGQEANALDVNLGAADEIARQLRLRD 375

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  
Sbjct: 376 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 435

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
           +  + C  C G G I+S       + R ++  + +       +H H  V  Y+     + 
Sbjct: 436 NVEETCPTCNGTGKIKSSILFTDQLERKIDRLVNKIGIAKFYLHVHPYVAAYINQGLISL 495

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             +++ ++G  ++++   +LA   + 
Sbjct: 496 RRKWQFKYGFGVHIIPSQKLAFLQYE 521


>gi|312876542|ref|ZP_07736525.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796753|gb|EFR13099.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 571

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 233/477 (48%), Gaps = 14/477 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162
           +D    ++ I  + S   V  I     E     + +A  N     N     G        
Sbjct: 20  EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79

Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+P+T      
Sbjct: 80  DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPSTEYVGVS 139

Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
            R  +    ++      + +     P GMG+I+RTA  S+++  +K + E+L  +W  ++
Sbjct: 140 KRIESEEERQR-----LKEIACRLKPEGMGLIVRTAAESKSEEILKSELEFLKNMWGRIK 194

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           + +  S AP L+Y++ +L+ +A+RD++   +   +++  K Y +  +F+    PS    V
Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIMEFLSSYAPSLKSKV 253

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             +     IF    IE +L       V L S GY++I++TEAL  IDVN+G+   +  + 
Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T L+TNLEAA EIARQLRLRD+ G+I++DFIDM+  ++ + V   LKE+LK+D+ +  V
Sbjct: 314 ETILKTNLEAAHEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             I+  GL+EM+R++IR  +       C YC+G G I S  SVA  +L+ +E Y      
Sbjct: 374 VDITPLGLVEMTRKKIRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
               V  ++ V   L   +   I E E ++   I V     +    F I        
Sbjct: 434 DKFFVEMNTKVCEILRKGEIDRIKELEQKYKKKIYVKASSNIHINKFTICPVKDEDH 490



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   +TRV VL D  + E+  E E  + I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G  ++ FL   +++        +YY+I
Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87


>gi|312880404|ref|ZP_07740204.1| ribonuclease, Rne/Rng family [Aminomonas paucivorans DSM 12260]
 gi|310783695|gb|EFQ24093.1| ribonuclease, Rne/Rng family [Aminomonas paucivorans DSM 12260]
          Length = 502

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 127/433 (29%), Positives = 211/433 (48%), Gaps = 10/433 (2%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             +K    ++VQ+VK  R  KGA VT  +SLAGRY VL+P   +     R        + 
Sbjct: 80  RNVKPNAEMIVQVVKSARKGKGARVTPRVSLAGRYLVLVPGGHETGVSKRIADEDERAR- 138

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
                     P G G+I+RT      +  + RD E L+  W  V E    + AP L+Y +
Sbjct: 139 -LRGLARSCRPQGYGLIVRTVAEGCDEENLMRDVEELLEQWQEVEENGRRNAAPCLLYRD 197

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
             L++R +RD    D++EI+V  E+     ++++K         V  Y    P+F   GI
Sbjct: 198 LGLLERVLRDELDGDVTEIVVDNEEERDRVEEWLKHFRDGEPPEVNYYRGNTPLFEIYGI 257

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++ L   +V L S  Y++I+QTEAL  IDVN+G+ T    +  T L TNLEAA+E+A
Sbjct: 258 EKEIEGLLDRKVWLHSGAYLVIDQTEALTVIDVNTGKFTGSTDLRHTVLATNLEAADEVA 317

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLR L G++V+DFIDME  ++ R++  +L+E  +KDR R +V  ++  GL+E++R+R
Sbjct: 318 RQLRLRALGGIVVIDFIDMETDEDRRALVARLQELFRKDRYRARVYGVTGLGLVEITRKR 377

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            R  +    ++ C +C G G++  + SVA+ I R + +      +  ++V  +  V  Y+
Sbjct: 378 ARPDLRSLVSRGCPFCGGLGWVEKEESVAMQIKRFLRKVCQSSRSEALLVEAYPAVARYV 437

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
                  +  ++  FG ++ +          F   +            +   D      +
Sbjct: 438 GE---TYLKAWQEEFGRTLFLR-----EVPEFSWARYRLDSQGSLAQMEHRVDLLERREE 489

Query: 592 KNIECVWQDEALL 604
           + +         +
Sbjct: 490 RAVVHRAAASPRV 502



 Score = 95.4 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 3  NKMLIDASHVEETRVVVLRD-NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           K++ +    EE RV +L +  R+ +L  E   ++Q  G IY A+V  V P + AAFV+ 
Sbjct: 5  KKIVANTVDSEEMRVAILDERGRLYDLYLERMWERQRTGEIYKARVDSVLPGMHAAFVNL 64

Query: 62 GGNRHGFLPFLEIHPD 77
          G  R+GFL   ++ PD
Sbjct: 65 GDGRNGFLYLDDV-PD 79


>gi|262368927|ref|ZP_06062256.1| ribonuclease G and E [Acinetobacter johnsonii SH046]
 gi|262316605|gb|EEY97643.1| ribonuclease G and E [Acinetobacter johnsonii SH046]
          Length = 484

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 126/412 (30%), Positives = 218/412 (52%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E+++  QIL VQ++K+  G KGA ++T LS+  RY V+MP  +  
Sbjct: 71  NDMVWSRNQPTPNVFELLQPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVMMPYGNHT 130

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               R  +     + L+ +   ++        VI+RTA     +  I +D  YL +LW+ 
Sbjct: 131 GVSQRIESEAERDR-LRSMIERIQAEHKLPGSVIVRTAADGIAEAAIAQDMAYLAKLWEF 189

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  +  ++I V   + + + ++F++  +P+   
Sbjct: 190 IQRKQISIAVPSLIFEELPLPQRIIRDLASEKTAKISVDSREIHGKLQEFVEEFVPNIKE 249

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    PIF    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 250 RLIHYPGERPIFDLYNVEEDIQRALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 309

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E+++   V  + +  L++D A+ 
Sbjct: 310 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEQEHRTEVMTQFERMLEQDHAKT 369

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
           ++  +S  GL+EM+R+R R S+     + C  C+G GY+++  SV   I R +  Y   Y
Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAESVCYEIFREIMRYTRAY 429

Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E   G  I   +      + + I
Sbjct: 430 QSQTGFTVVAHPSVIDRLLTAEAPAVADLEHFIGRVIKFQVENLYTQEQYDI 481



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M++++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 1  MSDELLINVT-PMECRVALIENGTVNELFIERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 60 IGLSRTAFLHINDM 73


>gi|260592147|ref|ZP_05857605.1| ribonuclease, Rne/Rng family [Prevotella veroralis F0319]
 gi|260535781|gb|EEX18398.1| ribonuclease, Rne/Rng family [Prevotella veroralis F0319]
          Length = 523

 Score =  241 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 207/423 (48%), Gaps = 3/423 (0%)

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
             V S+ + +      +     ++   IQ  ++  Q +LVQIVKE    KG  +T  +S 
Sbjct: 85  KQVQSDRKKLYPIQKANHLPDIQKDGTIQNALQVGQEVLVQIVKEPISTKGPRLTGEISF 144

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRY VL+P   K    S+  +     +   +       P   GVI+RT    +   E+ 
Sbjct: 145 AGRYLVLIPFGHKVSVSSKIKSGEERAR--LKQLIQSITPKNFGVIVRTVAEGKRVAELD 202

Query: 263 RDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            + + L+  W+        +   P LV+EE       +RDL+      I V+ +      
Sbjct: 203 AEMKVLLNRWNEAITKVQKTQERPQLVFEETGRAVAMLRDLFNPTYENIYVNDDDICTAV 262

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + ++ L+ P  A IV++Y    PIF    +  Q+ S     +      Y+II  TEA+  
Sbjct: 263 RHYVSLIAPEKASIVKKYNGKVPIFDNFDVTKQIKSSFGKTINYGHGCYLIIEHTEAMHV 322

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSG  T+E   E  AL TNL AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +
Sbjct: 323 VDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYE 382

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++ ++++KDRAR  +  +S FGL++++RQR+R  +     + C  C G G I S      
Sbjct: 383 RMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDENCPTCFGTGKIHSSILFTD 442

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            + R ++  + +       +H H  V  Y+     +   +++ R+G+ +N++   +LA  
Sbjct: 443 QLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGFISLKRKWQMRYGLGVNIIPSQKLAYL 502

Query: 562 LFY 564
            + 
Sbjct: 503 QYE 505



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M ++++ID    +E  + +L D R+ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1  MTSEVIIDV-QQKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  R  FL +L++         Y +   SDR+ L
Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKL 94


>gi|238021426|ref|ZP_04601852.1| hypothetical protein GCWU000324_01326 [Kingella oralis ATCC 51147]
 gi|237868406|gb|EEP69412.1| hypothetical protein GCWU000324_01326 [Kingella oralis ATCC 51147]
          Length = 498

 Score =  241 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 111/406 (27%), Positives = 207/406 (50%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             +  +    I+ V+   Q LLVQ++K+   +KGA ++T +SLAGR+ V +P        
Sbjct: 90  QRQNPESNQRIEHVLFEGQTLLVQVIKDPINSKGARLSTQISLAGRFLVHLPQDEHIGIS 149

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R           + +   L   A  G I+RT+  + +  E++ D +YL ++W N++  A
Sbjct: 150 QRIDNEFDRHTLRERLNALLPETACHGYIIRTSAENASDAELQADIDYLTKVWGNIQHQA 209

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+YE+  L +R +RD++  +  EI+V   + +   K F +  +      ++++
Sbjct: 210 KVLPPESLLYEDLPLAQRVLRDMFNNNTHEILVDSRQNFARMKHFAEQYVQGAVEKLQRF 269

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   P+F   G+E +++   Q  V L    Y+II  TEA+ +IDVN+G        ++T 
Sbjct: 270 QGERPLFETFGVEAEINRALQPRVNLNFGSYLIIETTEAMTTIDVNTGGFVGARNFDETI 329

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEA   IAR+LRLR+L G+I++DFIDM  +++  +V ++L ++L  DR RV +   
Sbjct: 330 FKTNLEACHAIARELRLRNLGGIIIIDFIDMMLEEHREAVLQELAKALSFDRTRVTLNGF 389

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           +  GL+E++R+R R S+     + C  C+G G +++  S+   I R +     ++ A   
Sbjct: 390 TRLGLVELTRKRSRESLKHILCEPCPTCQGKGSLKTAQSLCYEIQREIVRESRRFDAREF 449

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V+   L+++  ++       G  I++ +      + + I
Sbjct: 450 RIIASPKVIDMFLDEESQSLAMLIDFIGKPISLSVETAYTQEQYDI 495


>gi|50084043|ref|YP_045553.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter sp. ADP1]
 gi|49530019|emb|CAG67731.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament
           protein ) [Acinetobacter sp. ADP1]
          Length = 488

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 127/411 (30%), Positives = 216/411 (52%), Gaps = 2/411 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   QIL VQ++K+  G KGA ++T LS+  RY V+MP     
Sbjct: 75  NDMVWPRSQPTPNVYELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVMMPYGHHI 134

Query: 217 ETISRKITNPVDRKNLKEIAR-GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
               R        +    I R  +E      VI+RTA     +  I++D  YL +LW+ +
Sbjct: 135 GVSQRIEAEEERERLRGIIERIQVEHKLPGSVIVRTAAEGIDEASIEQDMCYLAKLWEFI 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +     ++ P L++EE  L +R IRDL  +D+++I V   + + + K+F+   +P+    
Sbjct: 195 QRKEKQAIVPSLIFEELPLPQRVIRDLASEDMTKIYVDSREIHAKLKEFIDEFVPNIQNR 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       +
Sbjct: 255 LIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRTL 314

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E  +   V K+ ++ L++D A+ +
Sbjct: 315 EDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEATHREEVMKQFQKMLERDHAKTK 374

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           +  +S  GL+EM+R+R R S+     + C  C+G GY+++  +V   I R +  Y   + 
Sbjct: 375 ITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCYEIFREILRYTRAFE 434

Query: 516 AHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + +   V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 435 SQSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M++++LI+ +   E RV ++++  V EL  E   K+ + GNIY+ KV RV P +QAAFVD
Sbjct: 5  MSDELLINVT-PMECRVALIQNGTVNELFVERTVKRGLVGNIYMGKVVRVLPGMQAAFVD 63

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 64 IGLSRTAFLHINDM 77


>gi|237712331|ref|ZP_04542812.1| ribonuclease G [Bacteroides sp. 9_1_42FAA]
 gi|229453652|gb|EEO59373.1| ribonuclease G [Bacteroides sp. 9_1_42FAA]
          Length = 524

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++  +   ++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  ++
Sbjct: 108 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W+        +   
Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   P
Sbjct: 226 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF   GI  Q+ S     ++  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 286 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       ++ 
Sbjct: 406 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  +  Y+     +   +++ ++G  I ++    LA   +        +  +   
Sbjct: 466 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDIQGEEIDMKEE 520



 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D    +E  + +L D  + E   E        GN+YL +V ++ P L A FVD
Sbjct: 1  MTSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 94


>gi|150006583|ref|YP_001301327.1| ribonuclease G [Bacteroides vulgatus ATCC 8482]
 gi|237726467|ref|ZP_04556948.1| ribonuclease G [Bacteroides sp. D4]
 gi|265752042|ref|ZP_06087835.1| ribonuclease G [Bacteroides sp. 3_1_33FAA]
 gi|319642900|ref|ZP_07997536.1| ribonuclease G [Bacteroides sp. 3_1_40A]
 gi|149935007|gb|ABR41705.1| ribonuclease G [Bacteroides vulgatus ATCC 8482]
 gi|229434993|gb|EEO45070.1| ribonuclease G [Bacteroides dorei 5_1_36/D4]
 gi|263236834|gb|EEZ22304.1| ribonuclease G [Bacteroides sp. 3_1_33FAA]
 gi|317385448|gb|EFV66391.1| ribonuclease G [Bacteroides sp. 3_1_40A]
          Length = 524

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++  +   ++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  ++
Sbjct: 108 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W+        +   
Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   P
Sbjct: 226 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF   GI  Q+ S     ++  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 286 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       ++ 
Sbjct: 406 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  +  Y+     +   +++ ++G  I ++    LA   +        +  +   
Sbjct: 466 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDVHGEEIDMKEE 520



 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D    +E  + +L D  + E   E        GN+YL +V ++ P L A FVD
Sbjct: 1  MTSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 94


>gi|157373702|ref|YP_001472302.1| ribonuclease G [Shewanella sediminis HAW-EB3]
 gi|157316076|gb|ABV35174.1| ribonuclease, Rne/Rng family [Shewanella sediminis HAW-EB3]
          Length = 500

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 121/396 (30%), Positives = 196/396 (49%), Gaps = 3/396 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP +S      R      + 
Sbjct: 105 INELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRI--ESEEV 162

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           ++  +      V    G I+RTA  S  + E+ +D  +L R+W  V E         L+Y
Sbjct: 163 RSRLKGLTEPFVDEDGGFIIRTAAESAGEQELVQDAAFLRRVWGRVSERR-KLKGVSLLY 221

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           ++  L  R +RD    ++ +I V   + + E + F +  MP  A  +  Y  P PIF   
Sbjct: 222 QDLALPVRIVRDFVGTELDQIQVDSSQTFEELQAFSEEFMPEIAEKIEHYNGPVPIFDLY 281

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E ++      +V L S GY+II+QTEA+ ++D+N+G       +E+T   TNLEA + 
Sbjct: 282 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 341

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L  DR +  +   S  GL+EM+R
Sbjct: 342 IARQLRLRNLGGIIIIDFIDMLRSEHQKRVLASLELALSADRVKTNISGFSGLGLVEMTR 401

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R R S+       C  C G G +++  +V+  I R +      Y A   +V+    V  
Sbjct: 402 KRTRESIEHVLCGECPACYGTGSLKTVETVSYEIFREIIRLDRSYDADEFLVYCAPGVFN 461

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            L  ++   + E     G  +        A   F +
Sbjct: 462 SLTGEEGHLVAELGVYIGKRVRFQNEPMYAQNKFDV 497


>gi|126176009|ref|YP_001052158.1| ribonuclease G [Shewanella baltica OS155]
 gi|125999214|gb|ABN63289.1| RNAse G [Shewanella baltica OS155]
          Length = 502

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                 DV K       I E+++  Q ++VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 90  HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           +S      R        +   +      V    G I+RTA     + E+ +D  +L R+W
Sbjct: 150 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 207

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E         L+Y++  L  R +RD    ++  I V   + + E + F +  MP  
Sbjct: 208 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQSFAQEFMPEI 266

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           A  +  Y  P PIF    +E ++      +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 267 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T   TNLEA + IARQLRLR+L G+I++DFIDM    +   V   L  +L KDR 
Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMMTADHKARVLSSLTSALSKDRV 386

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   S  GL+EM+R+R R S+       C  C G G +++  +V+  + R +     
Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 446

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            Y A   +++    V   L   +   I E E   G  I +      +   + +
Sbjct: 447 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 499


>gi|220915849|ref|YP_002491153.1| ribonuclease, Rne/Rng family [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953703|gb|ACL64087.1| ribonuclease, Rne/Rng family [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 844

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 141/528 (26%), Positives = 240/528 (45%), Gaps = 9/528 (1%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             K+ K    IQ+++K  Q ++VQ+ K+  G KGA +T+++SL GR+ V MP        
Sbjct: 321 EEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGIS 380

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R   +   R+           P G G I+RT   +    +++ D  +L+++W+ +    
Sbjct: 381 RRIEKDGERRR--LREIVDRMRPEGTGFIVRTVAENVEAAKLEADIRFLIQVWNEIIRTK 438

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
               AP L++ + +LI RA RDL+  ++ ++++     Y     F+    P     +  Y
Sbjct: 439 DKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERILRFVHDQAPHLESQIESY 498

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           +   PIF   GIE +L    Q +V L S GY+I++Q EAL +IDVNSGR   +  +E+T 
Sbjct: 499 QGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETI 558

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            + N+EAA+EI  QLRLR++ G+I++DFIDM++ +N   V K L+++L +D+A+  V  I
Sbjct: 559 TKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKI 618

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R+R SV     + C YC G G+++S+ ++A  I R +      +    +
Sbjct: 619 SELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAYEIFREIRREAPHFPEPVL 678

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALV 575
           +V++H +V   L   +R  +     RF  +I V        + F I    E+        
Sbjct: 679 VVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQEQFDIYGRQERAEQGGGGG 738

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
             G   GS                 +      +       +    ++ +    R  R  R
Sbjct: 739 GGGSGGGSGGGGGGSGGGGGGGRDRDRGRGRDRRGGRGGERGGERNDRNERGERGERGER 798

Query: 636 RRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
             R    +D  + G            +         +        E  
Sbjct: 799 NDRGGERSDRGERG--QREERGDRGGERPEGGEPRAAPEAPAQGGEKA 844



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ++I+A+   ETRV ++ +  + E   E + +K I GNIY  +V RV P +QAAFVD G  
Sbjct: 7  LVINAAGA-ETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLE 65

Query: 65 RHGFLPFLEIHPD 77
          +  FL   +++ D
Sbjct: 66 KAAFLYVGDVYGD 78


>gi|117927963|ref|YP_872514.1| ribonuclease G [Acidothermus cellulolyticus 11B]
 gi|117648426|gb|ABK52528.1| RNAse G [Acidothermus cellulolyticus 11B]
          Length = 702

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 200/362 (55%), Gaps = 6/362 (1%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I+  +K  Q ++VQ+ K+  G+KGA +T+ +SL GR+ V +P  S    ISRK+ +
Sbjct: 324 QPQRIEAALKPGQTVVVQVTKDPIGHKGARLTSQISLPGRFLVFVPEGSMMG-ISRKLPD 382

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               +   +      +P G GVI+RTA    ++ E+ RD   LM  W+++++ A +  AP
Sbjct: 383 TERNR--LKAILRKIMPEGAGVIVRTAAEGASEEELARDIARLMAQWEDIQKKAESGTAP 440

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y E +L  R +RD++ +D ++++V G+  +   + ++  + P     +  +     +
Sbjct: 441 ALLYAEPDLTIRVVRDIFNEDFAQLVVQGDSEWDMVEAYVAHVAPDLLPRISHWTSDEDV 500

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNL 404
           F    I+ QL       V LPS GY+II++TEA+V IDVN+GR   +   +E+T  +TNL
Sbjct: 501 FAHYRIDEQLAKALDRRVWLPSGGYLIIDRTEAMVVIDVNTGRFVGKGGNLEETVTKTNL 560

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ GL
Sbjct: 561 EAAEEIVRQLRLRDIGGIIVIDFIDMLLESNRELVLRRLVECLGRDRTKHQVAEVTSLGL 620

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++M+R+R+ S +LE+ ++ C  C G G I     V     R       +           
Sbjct: 621 VQMTRKRVGSGLLEAFSEPCEVCGGRGVIIHTDPVTAQ--RRAHRGRARTRQEAEPSAEP 678

Query: 525 SD 526
             
Sbjct: 679 VA 680



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    +    +I GN+YL +V  V P ++AAFVD G  R+  L   E+
Sbjct: 255 TQIGVLEDGILVEHYVSTTSANRIVGNVYLGRVQNVLPGMEAAFVDIGKGRNAVLYAGEV 314

Query: 75  HPD 77
           + D
Sbjct: 315 NFD 317


>gi|227539324|ref|ZP_03969373.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33300]
 gi|300774177|ref|ZP_07084045.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241006|gb|EEI91021.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33300]
 gi|300758988|gb|EFK55816.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33861]
          Length = 517

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 144/575 (25%), Positives = 254/575 (44%), Gaps = 60/575 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++ID++  +   + +L+D ++ EL       K+   N                  +
Sbjct: 1   MVKELIIDSTPDKGVTIALLQDKQLVEL------NKEQANN------------------N 36

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           +           +I+             L +   I    + A  D     D  +      
Sbjct: 37  F--------SVGDIY-------------LGRIKKIMPGLNAAFVDVGYEKDAFLHYLDLG 75

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +V  +   ++  +  S      + +   +D+             +   I +++    +L
Sbjct: 76  PQVQSLLKLTRIVKNGSYQEKLLNSLKLEKDID------------KAGKISDILSRNLLL 123

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            VQI KE    KG  +++ LS+AGR+ VL+P +S   +IS++I    +R  LK++  G++
Sbjct: 124 PVQIAKEPISTKGPRLSSDLSIAGRFVVLVPFSS-TVSISKRIKGSAERTRLKKVVEGIK 182

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                GVI+RT    +   E+++D   L+  W+   +    +  P  V  E +     +R
Sbjct: 183 PA-NFGVIIRTVSEGKGVEELQKDLLDLISKWELFTKRLRTAEPPQKVLGEMDRASTILR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   + + I V+    Y E K +++ + P   +IV+ Y+   PIF   G+E Q+ +   
Sbjct: 242 DILTDEFTHIYVNDPVIYEETKSYVQEISPDLEKIVKLYKHKEPIFDHFGVEKQIKASFG 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419
             V L    Y++I  TEAL  +DVNSG  T      ED AL  N EAA EIARQLRLRD+
Sbjct: 302 KTVNLQGGAYLVIEHTEALHVVDVNSGNRTANKENQEDNALLVNKEAAREIARQLRLRDM 361

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G++V+DFIDM +  N + +   L+E ++ DRAR  +   S FGL++++RQR+R  +   
Sbjct: 362 GGIVVIDFIDMHKPTNRKELFTYLRECMQADRARHTILPPSKFGLVQITRQRVRPEMSVV 421

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T + C  C G G IRS   +   I  ++   L +     I +  H  +  Y+ +   +  
Sbjct: 422 TNEKCPTCNGTGEIRSSIVLMDDIESNLSFILQEQNDKGITLCVHPYIEAYIKSGFVSKR 481

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           +++  +FG  I V      +   F+       +  
Sbjct: 482 IKWFMKFGRWIKVKAVSSYSLTEFHFFNAKDEEIK 516


>gi|87120469|ref|ZP_01076363.1| ribonuclease G [Marinomonas sp. MED121]
 gi|86164112|gb|EAQ65383.1| ribonuclease G [Marinomonas sp. MED121]
          Length = 484

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 124/398 (31%), Positives = 214/398 (53%), Gaps = 1/398 (0%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I + ++  Q L+VQ+ K+   +KGA +TT+LS+  RY V MP+ S      R       
Sbjct: 84  QIGDYLREGQSLVVQVTKDPISSKGARLTTHLSIPSRYLVYMPDQSHVGVSQRIEDEGER 143

Query: 229 RKNLKEIARGLEVPAGM-GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            +  + +++ L       G ILRTA     + EI+ D ++L RLW +V++   ++ AP +
Sbjct: 144 ERLKQLVSQALTQADETSGYILRTAAEGAGEDEIQADIKFLTRLWQSVKKRITSAKAPSV 203

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YE+  L  R +RDL      +I +   + Y + K F +  +P   + V  Y    PIF 
Sbjct: 204 IYEDLPLHLRTMRDLVSLKTEKIRIDSRENYAKLKAFAEEFIPEVGQRVEYYPGERPIFD 263

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              +E ++      +V L S GY+++ QTE++ +IDVN+G       +E+T  +TNLEAA
Sbjct: 264 IYSVEDEIQKALDRKVQLKSGGYLLVEQTESMTTIDVNTGAFVGSRNLEETIYKTNLEAA 323

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
             I RQLRLR+L G+I++DFIDME++++ R V + L++ L  D A+ ++  +S  GL+EM
Sbjct: 324 TAIGRQLRLRNLGGIIIIDFIDMEDEEHKRQVLRMLEKVLDLDHAKTKITGVSELGLVEM 383

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R R S+ ++  + C  C+G+G +++  +V   + R +      Y +    V     V
Sbjct: 384 TRKRTRESLGQTLCEPCRACRGSGLVKTPETVCYEVFREILRADRAYDSPTYAVLASRAV 443

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +  +  ++ A++ E EA  G SI+  I        + +
Sbjct: 444 IDRMHEEESASVAELEAFIGKSIHFQIETMYTQDQYDV 481



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+  +LI+ +   E RV ++ +  ++E+  E   +K I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEDVLINVT-PMEIRVALVENGVLQEVYIERSTRKGIVGNIYQGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  F+   E+
Sbjct: 60 IGLERAAFIHVSEV 73


>gi|212550695|ref|YP_002309012.1| ribonuclease G [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548933|dbj|BAG83601.1| ribonuclease G [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 518

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 118/567 (20%), Positives = 209/567 (36%), Gaps = 63/567 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +   + VL D  + E   E        GNIYL +V ++ P L AAFVD
Sbjct: 1   MISELVIDV-QPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            GG +  FL + ++                                V       P    L
Sbjct: 60  IGGEKGAFLHYRDLG-------------------GNINSLNTFLKKVFSEKRIPPIGKFL 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
              A +A     T+           +        G           +  I     +R  +
Sbjct: 101 CSSAEVAKDISITDILKQGDNVLVQIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRVSI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            ++I  ++   +   +   +       ++  +    +         +  K   +    L 
Sbjct: 161 SLKIQSDKERIRLKQLVCSIKPKNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLI 220

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +I       R    ++ +F+          E   N                   
Sbjct: 221 NSKSPSLIY--EETGRVLALLRDNFDSSFEHIYINDENMFN------------------- 259

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                              E +D++ L+ P  + IV+ Y+   PIF    I  QL S   
Sbjct: 260 -------------------EVRDYLSLIDPQKSNIVKLYKGEFPIFDNFVITKQLKSKFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRS---TREHCIEDTALQTNLEAAEEIARQLRLR 417
             +TL +  Y++I  TEA+  IDVNSG     T     ED  +  N+ AAEEIA+QLRLR
Sbjct: 301 KIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQLRLR 360

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           D+ G+IV+DFIDM E+ N + +   +   + KDRA+  V  +S  GL+E++R+RIR ++ 
Sbjct: 361 DMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRPALD 420

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
            +  + C+   G G I+        +   ++  + +       +H H  V  ++     +
Sbjct: 421 FNAMETCSVPLGKGTIKPSIFFTDMLDEKIKIVVKKMGVKEFSLHIHPYVAAFVKKGFFS 480

Query: 538 TIVEYEARFGVSINVVIGIELADKLFY 564
             ++++ ++ V I ++    L    + 
Sbjct: 481 LNMKWKIKYSVGIRIIPDQSLEILGYK 507


>gi|333030021|ref|ZP_08458082.1| ribonuclease, Rne/Rng family [Bacteroides coprosuis DSM 18011]
 gi|332740618|gb|EGJ71100.1| ribonuclease, Rne/Rng family [Bacteroides coprosuis DSM 18011]
          Length = 525

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 117/564 (20%), Positives = 223/564 (39%), Gaps = 60/564 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL +V ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSLALLEDKSLVELQSEGVNISFSVGNMYLGRVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL +L++ P +  +    +Q L     +       +  D+         D S+
Sbjct: 60  VGYEKDAFLHYLDLGPQFNSLGKYVKQTLSNRKKLPPMSKANMLPDID-------KDGSI 112

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +V  +         +  IS     +++     G     +P   K     +      +  
Sbjct: 113 SDVLKVGQEVVVQIAKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSKERAR 172

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L Q+++  +                             I R +        L    + L 
Sbjct: 173 LKQLLRSIKP-----------------------KNFGVIVRTVAEDKRVAELDAELKLLL 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  I +   A++    I  +    + L  ++   +  ++  +       +      
Sbjct: 210 KRWDES-IKKVQRATKFPTLIFEETSRAVALLRDLFNPSFKNIYINDEVVYNEIRDYVKL 268

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
               K+       G+    +  D  K +  S+ + V                        
Sbjct: 269 IAPDKENIVKRYKGQLPIFDNFDITKQIKSSFGKTVSYKR-------------------- 308

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419
                    Y+II  TEAL  +DVNSG  T+    ++  A++ NL AA+EIARQLRLRD+
Sbjct: 309 -------GAYLIIEHTEALHVVDVNSGNRTKNANGQEANAVEVNLGAADEIARQLRLRDM 361

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IV+DFIDM E  N + + +++  +++KDRAR  +  +S FGL++++RQR+R ++  +
Sbjct: 362 GGIIVIDFIDMNESANRQKIYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVN 421

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T + C  C G G I+S      ++   ++  + +       +H H  V  Y+     +  
Sbjct: 422 TLETCPTCFGKGSIKSSILFTDTLENKIDYLVHKLKKKRFSLHVHPYVAAYINQGVISLK 481

Query: 540 VEYEARFGVSINVVIGIELADKLF 563
             ++ ++G  I ++   +LA   +
Sbjct: 482 RRWQMKYGFGIKIIPSQKLAFLEY 505


>gi|256787779|ref|ZP_05526210.1| hypothetical protein SlivT_25102 [Streptomyces lividans TK24]
          Length = 1042

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 145/550 (26%), Positives = 249/550 (45%), Gaps = 9/550 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 332 GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 391

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L   W+
Sbjct: 392 SMTG-ISRKLPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 448

Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           ++++ A +   S AP L+Y E ++  R +RD++ +D S+++VSG+  ++    ++  + P
Sbjct: 449 DIQKKAKSGGSSNAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAP 508

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
             A  + ++     +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T
Sbjct: 509 DLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFT 568

Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
            +   +E+T  + NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +
Sbjct: 569 GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGR 628

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-QSSVALSILRSVE 508
           DR + QV  +++ GL++M+R+R+   +LES ++ C +C G G I       +        
Sbjct: 629 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSSAGGGGGKR 688

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
               +  A     H H  V             + E+   V+  V   + L    F  ++ 
Sbjct: 689 RKRARAGAEQPHEHEHEAVAGIETGPTPEQEADTESETEVAAEVAEPVALPAPDFSADEE 748

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQDNIVSEESTGV 627
               A            +  +  +         A     K+ES++ +             
Sbjct: 749 LYSSAAEAEAAATRGRGRRRASRRASAPAGAPRAAKGEAKAESVKAEAAPAGAPTAQDVT 808

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
           +R+   R  RR PA +        + +        +      P+                
Sbjct: 809 VREEVERPVRREPAAEVLAEPAAVEDAVSGAPAPAAAAETAAPAPEEAAPKGRTRRRATR 868

Query: 688 ENYDVSIPPV 697
           +    +  P 
Sbjct: 869 KVSAPAGSPE 878



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   H E T++ VL D  + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 263 ERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 322

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 323 KGRNAVLYAGEV 334


>gi|145588796|ref|YP_001155393.1| ribonuclease [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047202|gb|ABP33829.1| RNAse G [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 487

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 129/406 (31%), Positives = 217/406 (53%), Gaps = 7/406 (1%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS------KGETIS 220
           Q  I++++   Q LLVQ++K+  G KGA +TT LS+AGR  V +P         K   +S
Sbjct: 79  QPQIEKLLFEGQSLLVQVLKDPLGTKGARLTTQLSIAGRNLVYLPPAGTDVATEKYIGVS 138

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVIL-RTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           ++I  P +R+ +K     L      G I+ RT+    +  E++ D  YL   W+N+R+  
Sbjct: 139 QRIDKPEEREAIKARLASLMAEDEKGGIIVRTSAQDASDTELQHDMHYLRTTWENIRDAM 198

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
            +  AP L+Y++ +L +R +RD+  +D S+I V   + + + K F  L MP+    +  +
Sbjct: 199 KSKAAPSLLYQDLSLAERVLRDVAGEDTSQIRVDSAENFEKLKGFANLYMPNLLSKLTLH 258

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
                +F    ++ +++      V L S GY++I+QTE++ +IDVN+G       ++DT 
Sbjct: 259 RGERALFDLFDVDAEINKALGRRVDLKSGGYLMIDQTESMTTIDVNTGSYVGARNLDDTV 318

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            +TNLEAA+ IARQLRLR+L G+I++DFIDM  + +  SV  +LK +L++D AR  V   
Sbjct: 319 FKTNLEAAQAIARQLRLRNLGGIIIIDFIDMIGRDHQESVLYELKRNLERDHARTSVSEF 378

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S  GL+EM+R+R R S+   T + C  C+G G I++  ++   ILR +     Q+     
Sbjct: 379 SALGLVEMTRKRTRESLAHITCEPCATCQGKGEIKTAQTICYEILREIVREHRQFNPREF 438

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    DV+   L ++   + +     G  I +        + + I
Sbjct: 439 RIVAAPDVIDLFLEEENQFLAQLGDFIGKPITLQAEGSFRQEQYDI 484



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++LI+ +  +ETRV +++   V+EL  E   ++ I GNIYLAKV RV P +Q+AF++
Sbjct: 1  MNEEILINIT-PQETRVALIQQGAVQELQIERTRQRGIVGNIYLAKVVRVLPGMQSAFIE 59

Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKE 92
           G  R  F+   +I   +    P    + LL E
Sbjct: 60 VGLERTAFMHVADITQSN----PQPQIEKLLFE 88


>gi|297182000|gb|ADI18175.1| ribonucleases g and e [uncultured delta proteobacterium
           HF0200_39N20]
          Length = 489

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 229/413 (55%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +       P++   +  I ++I+  Q +LVQ+ K   G KGA +T ++S+ GR  V +P 
Sbjct: 76  ENEILGKTPRENGEKKEIGQLIQEGQDVLVQVSKGPIGTKGARITNHVSIPGRNLVYLPT 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           T        +  +    +   +       P   G I+RT     T+ ++  D  YL+ +W
Sbjct: 136 TQTLGVS--RQISMERERERLKEIVDRLRPENSGFIIRTVAEGHTEEDLHSDINYLVSIW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           +++ E   +  AP L++ + N++ R IRD++  D+ +++V  +  +++ + F++  +P Y
Sbjct: 194 NDILEKFRSLPAPSLLHSDLNIVFRTIRDIFSSDVKKLVVDDKTQFQKIRQFVRSYLPRY 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           + ++  Y  P P+F    IE ++D     +V L S G+++I+QTEAL S+DVN+GR   +
Sbjct: 254 SSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRSGGHLVIDQTEALTSVDVNTGRFVGK 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              E+T  +TN+EAAEEI  QL+LR++ G+I++DFIDME +++ + V + LK+ L+ D+A
Sbjct: 314 ESHENTIYRTNIEAAEEIVYQLQLRNIGGIIIIDFIDMESQQHRQMVYQTLKDQLRTDKA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R ++  IS  GL+EM+R+R R ++       C YC G G I+S S+V+  + R +     
Sbjct: 374 RSKILQISEMGLVEMTRKRDRENLNRYLCDPCPYCDGTGQIKSASTVSYEVFREIRRSCR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           Q T  +I +  HSDV  Y+  +++  +   E   G +I   +  +L  + F +
Sbjct: 434 QNTKGSITLFLHSDVHRYIQQEEQEAVESLEEEMGRTITFKVSDDLHHEQFEL 486



 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/482 (12%), Positives = 132/482 (27%), Gaps = 45/482 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I+ +   ETRV V+    + EL  E E   ++  NIY  KV  V P +++AFVD
Sbjct: 1   MTKEIIINHT-SHETRVAVMEAGLLTELHHEREKVMRVVDNIYKGKVLNVLPGMESAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  F    +I P+           +L ++     + + +   +  G   +      
Sbjct: 60  IGEERAAFFHIDDILPE---------NEILGKTPRENGEKKEIGQLIQEGQDVLVQVSKG 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  +                  +   +  S E   ++   +  +  +       
Sbjct: 111 PIGTKGARITNHVSIPGRNLVYLPTTQTLGVSRQISMERERERL--KEIVDRLRPENSGF 168

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN---------TSKGETISRKITNPVDRKN 231
           +++ V E    +         ++    +L             S    + R I +      
Sbjct: 169 IIRTVAEGHTEEDLHSDINYLVSIWNDILEKFRSLPAPSLLHSDLNIVFRTIRDIFSSDV 228

Query: 232 LKEIARGLEVPAGMGVILRTA--------GASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            K +         +   +R+                 +   +     +   +        
Sbjct: 229 KKLVVDDKTQFQKIRQFVRSYLPRYSSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRS 288

Query: 284 --------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
                      L   + N  +   ++ +   I    +   +          +        
Sbjct: 289 GGHLVIDQTEALTSVDVNTGRFVGKESHENTIYRTNIEAAEEIVYQLQLRNIGGIIIIDF 348

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT-----EALVSIDVNSGRST 390
           +      H       ++ QL +       L      ++  T     E L     +     
Sbjct: 349 IDMESQQHRQMVYQTLKDQLRTDKARSKILQISEMGLVEMTRKRDRENLNRYLCDPCPYC 408

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV---VDFIDMEEKKNNRSVEKKLKESL 447
                  +A   + E   EI R  R      + +    D     +++   +VE   +E  
Sbjct: 409 DGTGQIKSASTVSYEVFREIRRSCRQNTKGSITLFLHSDVHRYIQQEEQEAVESLEEEMG 468

Query: 448 KK 449
           + 
Sbjct: 469 RT 470


>gi|255659274|ref|ZP_05404683.1| ribonuclease G [Mitsuokella multacida DSM 20544]
 gi|260848731|gb|EEX68738.1| ribonuclease G [Mitsuokella multacida DSM 20544]
          Length = 480

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 127/407 (31%), Positives = 203/407 (49%), Gaps = 6/407 (1%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
           P +          I   Q L +QIVK+  G KG   T ++SL GR  VLMP  +      
Sbjct: 74  PHETIESMPQNARIHIGQSLPIQIVKDAIGTKGPRATMHISLPGRNVVLMPTAAYIGMSR 133

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           R        +           P GMG+I+RT  A +++  +  D  YL+RLW+++     
Sbjct: 134 RIEDEGERAR--LHAIAERICPKGMGLIIRTVAAGQSEQSLAADVRYLVRLWESILARYK 191

Query: 281 NS-VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
                  L+Y + +LI R +RD +  DI E+++  E+ Y+  +  ++   P     +R Y
Sbjct: 192 MRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEEAYQRVRSLVEANSPELVDRIRFY 251

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           E   PIF    IE +++ L   EV L S G+++I++TEAL  IDVN+G+   +  + DT 
Sbjct: 252 EAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDKTEALTVIDVNTGKYVGKTNLGDTV 311

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            QTNLEAA EI +Q+RLRD+ G+I+VDFIDME++     +   ++E +K DR +  +  I
Sbjct: 312 YQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQKEELLTYMREQVKHDRTKTNIVDI 371

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN- 518
           ++ GL+E++R++ R ++       C  C G G I S  +VA+ I R +     +  A   
Sbjct: 372 TSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIESPETVAIRISRDIRRMERKSHAREG 431

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +  H  V   L       ++   A FG  I V +   +  + + I
Sbjct: 432 YEIEVHETVAEELRAN--QLMMNLAAEFGTDIKVTVKPGMHPENYTI 476



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          +I     EET + +L D  ++ ++ E      + GNIY  +V  V P +QAAFVD G  +
Sbjct: 4  IIVNMVPEETCMALLEDGELQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDIGTGK 63

Query: 66 HGFLPFLE 73
          + FL   +
Sbjct: 64 NAFLYIGD 71


>gi|167470019|ref|ZP_02334723.1| ribonuclease E [Yersinia pestis FV-1]
          Length = 990

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 128/392 (32%), Positives = 205/392 (52%), Gaps = 7/392 (1%)

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P ++  ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+
Sbjct: 19  PDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARA 78

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
           TR   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +L++++++
Sbjct: 79  TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQ 138

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DRAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE
Sbjct: 139 DRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 198

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568
             L+   H +       +  YLLN+KR ++   E R  GV   +V   ++    + + + 
Sbjct: 199 EALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRV 258

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              + + +  + +    +A       E   + +   P   + +   +   +  EE+  V 
Sbjct: 259 RKGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVA 316

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAH 684
           + +         +TD    G  S + S ++N+   S +  ++P+++   +  E   N   
Sbjct: 317 KAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRR 376

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                 +           E  ++SS     + 
Sbjct: 377 NPRRQNNGRKERNDRTPREGRDNSSRDNTNRD 408


>gi|224026369|ref|ZP_03644735.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM
           18228]
 gi|224019605|gb|EEF77603.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM
           18228]
          Length = 524

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 207/415 (49%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I  V++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  +N
Sbjct: 108 KDGSISNVLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSN 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W+        +   
Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKATKL 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  Y E KD++ L+ P    IV+ Y+   P
Sbjct: 226 PSLVYEETSRTVAMLRDLFNPSYENIYVNDEAVYNEVKDYVALIAPERVNIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF    I  Q+ S     ++  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 286 IFDNFAITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSGNGQEANALDVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKKFTLHI 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  V  Y+     +   +++ +FG  I V+    LA   +        +  +   
Sbjct: 466 HPYVAAYVNQGLVSLKRKWQMKFGFGIKVIPNQNLAFLEYKFYDTKGEELDMKEE 520



 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D    +E  + +L D  + EL  E  +     GN+Y+ KV ++ P L A FVD
Sbjct: 1  MTSELVVDV-QPKEISIALLEDKNLVELQKEERNLSFSVGNMYVGKVKKIMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVVSDRKKL 94


>gi|288553572|ref|YP_003425507.1| RNAse G [Bacillus pseudofirmus OF4]
 gi|288544732|gb|ADC48615.1| RNAse G [Bacillus pseudofirmus OF4]
          Length = 503

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/400 (30%), Positives = 205/400 (51%), Gaps = 4/400 (1%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +Q  I E +   Q LLVQ+ KE  G KG  ++  +S+ G+Y+V MP         R    
Sbjct: 87  KQRNITEFVTKGQELLVQVTKEGFGQKGPRLSGVVSMPGKYTVYMPEGGYVGVSRR--MG 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             + +          +    G+I+RT         I++D  +L   W++V +      AP
Sbjct: 145 TEEERERLRGIGEDLLKENEGMIIRTVCEDAKPEVIEQDLHFLRTSWESVWQEGKEKRAP 204

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+++  +LI++ + D     I EI++     Y+  K  +      + ++   ++    I
Sbjct: 205 ALIHQGSSLIEKMMLDFSLNQIDEIVIDDADDYQTLKALLAPYSDVHEKVRLYHD-KENI 263

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   GI+ +LD   + ++ L +  Y+I++QTEAL  IDVN+G+ T +  ++DT  +TNLE
Sbjct: 264 FSVFGIDKELDKALRRQIWLKNGAYLIVDQTEALTVIDVNTGKFTGKTDLQDTVRKTNLE 323

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+EIARQLRLRD +G+I++DFIDM+ +++   V +  K  LK+DR +  V  ++  GL+
Sbjct: 324 AAKEIARQLRLRDTSGIIIIDFIDMKREEDREYVLEAFKRGLKQDRTKTNVVGLTGLGLV 383

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EM+R+++R S+  S +K C  CK  G + S  + A  I R + EY        I++   S
Sbjct: 384 EMTRKKVRQSLQASLSKACPTCKEQGSVLSDEAQAYKIERLIWEY-RGMDHEAILIELPS 442

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V   L   K   + + E   G  I ++    + ++ F I
Sbjct: 443 AVSAVLAGPKGELLKQLEEATGFRILLMPNKHMPEEAFAI 482



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  K+  + +   E R  ++ + +V EL  E   + +I GN+Y+ +V  V P +QAAFVD
Sbjct: 1  MNRKIYFN-TATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  ++GFL   ++  
Sbjct: 60 IGREKNGFLYRDDLLS 75


>gi|288802261|ref|ZP_06407701.1| ribonuclease, Rne/Rng family [Prevotella melaninogenica D18]
 gi|288335228|gb|EFC73663.1| ribonuclease, Rne/Rng family [Prevotella melaninogenica D18]
          Length = 523

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/497 (26%), Positives = 229/497 (46%), Gaps = 16/497 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128
           P     ALL++  + +   E      + G++ +               D   E  A +  
Sbjct: 11  PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
               ++  S       V S+ + +            ++   +Q  ++  Q ++VQIVKE 
Sbjct: 71  LDLGSQFNSYAKYLKQVQSDRKKLYPIQKATRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
              KG  +T  +S AGR+ VL+P   K    S+  +     +   +       P   GVI
Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIKSGEERAR--LKQLIQSITPKNFGVI 188

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307
           +RT    +   E+  + + L+  W+        +   P LV+EE       +RDL+    
Sbjct: 189 VRTVAEGKRVAELDAEMKVLLSRWNEAITRLQKTQERPQLVFEETGRAVAMLRDLFNPTY 248

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             I V+ ++     + ++ L+ P  A IV++Y    PIF    +  Q+ S     +    
Sbjct: 249 ENIYVNDDEICTAVRHYVSLIAPEKAGIVKKYTGKVPIFDNFDVTKQIKSSFGKTINYGH 308

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
             Y+II  TEA+  +DVNSG  T+E   E  AL TNL AA+E+ARQLRLRD+ G+IVVDF
Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R  +     + C  C
Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDENCPTC 428

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G G IRS       + R ++  + +       +H H  V  Y+     +   +++ ++G
Sbjct: 429 FGTGKIRSSILFTDQLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGLISLKRKWQMKYG 488

Query: 548 VSINVVIGIELADKLFY 564
           + +N++   +LA   + 
Sbjct: 489 LGVNIIPSQKLAYLQYE 505



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D R+ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97
            G  R  FL +L++         Y +   SDR+ L       +
Sbjct: 60  VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPIQKATR 102


>gi|94987213|ref|YP_595146.1| ribonucleases G and E [Lawsonia intracellularis PHE/MN1-00]
 gi|94731462|emb|CAJ54825.1| Ribonucleases G and E [Lawsonia intracellularis PHE/MN1-00]
          Length = 666

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 159/421 (37%), Positives = 247/421 (58%), Gaps = 5/421 (1%)

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
            + N  +  +    +       P K K+   IQ+V+K  Q +LVQ+VKE  GNKGA +TT
Sbjct: 237 NTKNGFLQIDEVHPEYYLQPHEPTKLKKYPPIQKVLKAGQEILVQVVKEPTGNKGAFLTT 296

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
           +LSLAGR+ VL P   +   ISRK+ +  +R  L+E+ +GL+  +G+G I+RT     +K
Sbjct: 297 WLSLAGRFLVLTPGQEQIG-ISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGTSK 355

Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
             +++D  +L R+W  +R+ A    +P L+YEE  L  RA+RD    DI+EI V   +  
Sbjct: 356 TTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPETK 415

Query: 319 REAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           +  ++   LL P   ++V     +  P++    +  Q+  +H  EV +PS G ++ +QTE
Sbjct: 416 QAIQEVTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFDQTE 475

Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
           AL++ID+NSGR   +   E  A +TN+EAA  IA+QLRLRD+ G IV+DFI+M+E  + R
Sbjct: 476 ALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPAHCR 535

Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            VEK+L+ ++K DRAR  VG +S+FGLL++ RQRI SS +  + + C YC+G G  R+  
Sbjct: 536 DVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRRNIE 595

Query: 498 SVALSILRSVEEYLLQY---TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             A+  LR + + + Q      H  I     ++ LYLLN KR  ++  E  FG+ +++ I
Sbjct: 596 WQAIQTLREIHKKMQQTVTAGKHEYIHTLDQELGLYLLNNKRNRLIALEQEFGIHLDIRI 655

Query: 555 G 555
            
Sbjct: 656 S 656



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             KMLI     E+  V +  D ++ E   E  H  +I+GNIY   +  ++ +LQAAF++Y
Sbjct: 176 NKKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFINY 235

Query: 62  GGNRHGFLPFLEIHPDYYQIPFS 84
           G  ++GFL   E+HP+YY  P  
Sbjct: 236 GNTKNGFLQIDEVHPEYYLQPHE 258


>gi|254881515|ref|ZP_05254225.1| ribonuclease G [Bacteroides sp. 4_3_47FAA]
 gi|294775456|ref|ZP_06740969.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
 gi|254834308|gb|EET14617.1| ribonuclease G [Bacteroides sp. 4_3_47FAA]
 gi|294450697|gb|EFG19184.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
          Length = 537

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++  +   ++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  ++
Sbjct: 121 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 180

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W+        +   
Sbjct: 181 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 238

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   P
Sbjct: 239 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 298

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF   GI  Q+ S     ++  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 299 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 358

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       ++ 
Sbjct: 419 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 478

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  +  Y+     +   +++ ++G  I ++    LA   +        +  +   
Sbjct: 479 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDVHGEEIDMKEE 533



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            +++++D    +E  + +L D  + E   E        GN+YL +V ++ P L A FVD 
Sbjct: 15  TSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDV 73

Query: 62  GGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 74  GFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 107


>gi|323436040|ref|ZP_01049920.2| ribonuclease, Rne/Rng family [Dokdonia donghaensis MED134]
 gi|321496355|gb|EAQ39892.2| ribonuclease, Rne/Rng family [Dokdonia donghaensis MED134]
          Length = 512

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 132/558 (23%), Positives = 230/558 (41%), Gaps = 62/558 (11%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           I  S        +L+D ++ EL  + +  K   G+IY+A V +    L AAFV+ G  + 
Sbjct: 2   IIRSSSSVVDFALLKDGKLIELHKDEDENKFNVGDIYIANVRKAVSGLNAAFVNVGYEKD 61

Query: 67  GFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126
            FL + ++ P   ++P      LLK      T          +       +  +++   I
Sbjct: 62  AFLHYHDLGP---KLPT-----LLKYIKSISTGKLK-----DYSLQNFTFEKDIDKNGKI 108

Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186
           A+  +  +   +  A   + +    +              +Y +     +R  +  +I  
Sbjct: 109 ADVLKSKQSVLVQIAKEPISTKGPRISSE------LSIAGRYIVLVPFSDRISISQKIES 162

Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246
           +E   +   + T +   G                                         G
Sbjct: 163 KEEKARLKRLVTSIRPKGF----------------------------------------G 182

Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
           VI+RT        E+ +D + L+  W  + +    +  P  V  E N     +RD++   
Sbjct: 183 VIVRTVAQGVKVAELDKDLQNLVDKWTTMSKKIKGAHHPSKVLGEMNRASSILRDIFNDS 242

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
            + I V  E  Y + K+++  + P    IV+ Y    PIF + GIE Q+ +     V++ 
Sbjct: 243 FTSITVDDETLYYQIKEYLSEIAPHKESIVKLYNSQVPIFEKFGIERQIKTSFGQTVSMS 302

Query: 367 SRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425
              Y++I  TEAL  +DVNSG RS +    EDTAL+ N+ AA E+ARQL LRD+ G+IVV
Sbjct: 303 RGAYLVIEHTEALHVVDVNSGNRSNKAKSQEDTALEVNMIAASEVARQLSLRDMGGIIVV 362

Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485
           DFIDM + +N R +   LK+ +K+DRA+ ++   S FGL++++RQR+R  +   T +   
Sbjct: 363 DFIDMAKAENRRKLFNHLKDEMKEDRAKHKILPPSKFGLIQITRQRVRPEMNIKTREENP 422

Query: 486 YCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR 545
              G   I +   +   +   +   L +  A  + +H H  V  YL     +   ++   
Sbjct: 423 N-GGTNEIEAPIVIVEKLQGQLNRIL-KSGAKKVTLHAHPFVAAYLTKGFPSIRSKWFLE 480

Query: 546 FGVSINVVIGIELADKLF 563
               + V+         +
Sbjct: 481 HKKWVKVMPRDAYTYLEY 498


>gi|212691237|ref|ZP_03299365.1| hypothetical protein BACDOR_00728 [Bacteroides dorei DSM 17855]
 gi|212666469|gb|EEB27041.1| hypothetical protein BACDOR_00728 [Bacteroides dorei DSM 17855]
          Length = 537

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++  +   ++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  ++
Sbjct: 121 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 180

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W+        +   
Sbjct: 181 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 238

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  + E KD++ L+ P  A IV+ Y+   P
Sbjct: 239 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 298

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF   GI  Q+ S     ++  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 299 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 358

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       ++ 
Sbjct: 419 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 478

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  +  Y+     +   +++ ++G  I ++    LA   +        +  +   
Sbjct: 479 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDVHGEEIDMKEE 533



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            +++++D    +E  + +L D  + E   E        GN+YL +V ++ P L A FVD 
Sbjct: 15  TSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDV 73

Query: 62  GGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 74  GFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 107


>gi|162455546|ref|YP_001617913.1| ribonuclease G [Sorangium cellulosum 'So ce 56']
 gi|161166128|emb|CAN97433.1| ribonuclease G [Sorangium cellulosum 'So ce 56']
          Length = 907

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 156/492 (31%), Positives = 251/492 (51%), Gaps = 9/492 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   RQA  +     +   E         D          E        +E         
Sbjct: 416 PREGRQAPREGREAPREGREGREAPREGRDRGGKGQQGGREGRDREQRGREQRTRERGRE 475

Query: 142 NNDVVSNVEDVKGGSP----EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
            +         +G       ++ P +  +   I+EV++  Q ++VQ+ KE  G KGA VT
Sbjct: 476 QSRDGKGKSAARGQQSSRSWQNEPPRISKSTPIREVVREGQEVIVQVSKEPIGTKGARVT 535

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
           +++SL GRY V +P         R  +     + L++    ++ P G G+I+RT     T
Sbjct: 536 SHISLPGRYVVYLPTVDHIGISKRIGSEKERSR-LRDAIEAMKPPQG-GLIVRTLAEGLT 593

Query: 258 KIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316
           K ++K D  YL+RLW  V +   +   AP ++Y E +L+ +  RDL+  DI +I++   +
Sbjct: 594 KKQLKADVGYLVRLWGEVAKKRESGVRAPAVLYTELDLVLKTARDLFTDDIEKIVIDDRE 653

Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
            Y   + F+++ MP  A  V  YE   PIF   GIE ++      +V LPS G++II+Q 
Sbjct: 654 EYIRLRRFVEMFMPERADAVELYEGTEPIFDAYGIEDEIQRALSRKVPLPSGGHLIIDQA 713

Query: 377 EALVSIDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434
           EAL +IDVN+GR   +    +E+T L TNLEA EEIA QLR R++ GLI++D IDME  +
Sbjct: 714 EALTAIDVNTGRFVGKGSKDLEETILTTNLEAVEEIAYQLRFRNIGGLIILDLIDMERAQ 773

Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494
           N   V ++L+E L +D+A+  +  IS+ GL+EM+R+R R S+  +  + C YC G G ++
Sbjct: 774 NREKVRRRLEELLSRDKAKTTLNRISDLGLIEMTRKRTRESLGRTILEPCFYCDGTGQLQ 833

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
           S+ +VA  ILR +    +    ++++V+ H  V+  L N +R  + E E  F   I++V 
Sbjct: 834 SKQTVAYEILRQIRRERMNLPGYSVVVNAHPAVIDLLKNDERIAVQEAERLFQRRIDLVP 893

Query: 555 GIELADKLFYIE 566
             E   + F ++
Sbjct: 894 RKEYHLEQFDLQ 905



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   +L+    + ETRV ++ +  + EL  E E  K   GNIYL KV+RV P +QAAF+D
Sbjct: 1   MGKNLLVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFID 60

Query: 61  YGGNRHGFLPFLE-IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
            G  R  FL   + I PD ++   +  +  ++E   +     A   +    D +  ++ S
Sbjct: 61  VGLERAAFLHVEDLIRPDDFEAYLAGHRRTVEEERASSRGRAARGSEAPRPDESEVHELS 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVE 150
             E AP +        E    A+       +
Sbjct: 121 GAEAAPESPDLTPGRHELREGADFGAEEGFD 151


>gi|323704252|ref|ZP_08115831.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536318|gb|EGB26090.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 473

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 135/400 (33%), Positives = 221/400 (55%), Gaps = 8/400 (2%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I + +K  Q ++VQ++K+  G K   VTT +SL G+Y VLMP+        R     
Sbjct: 79  NPSITKYVKPGQDIIVQVLKDSIGLKNPRVTTNISLPGKYVVLMPDADHVGISHRI--ED 136

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             ++           P  +G+I+RTA     + E ++D   L +L++++      + +P 
Sbjct: 137 EKKRMELINIAKRVKPDNVGIIIRTAAQYVGEEEFEKDIVDLCKLYEDILNKCKFADSPE 196

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+YEE N I + IRDL    + EI+V+    Y++  D++K    + +      +    + 
Sbjct: 197 LIYEEENFIVKYIRDLSSLIVDEIVVNDITEYKKIFDYIKKEGLNISVKYEDGD----LV 252

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              GIE Q++ L   +V L S G++II++TEAL  IDVN+G+ T +  + +T L+TN+EA
Sbjct: 253 GLYGIEKQVERLLSKKVWLKSGGFIIIDETEALTVIDVNTGKYTGKSSLHETILKTNIEA 312

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+EIA QLRLRD+ G+IVVDFIDM+   + + + +  +ESLK DR++  V   ++ GL+E
Sbjct: 313 AKEIALQLRLRDIGGIIVVDFIDMDSDNDRQKLLRVFEESLKSDRSKCSVLGFTHLGLVE 372

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R+RS+V E   + C  CKG G I S   + L I RS+E  L    A  I + ++  
Sbjct: 373 MTRKRVRSNVSEYLQEKCDCCKGTGCIVSSDMMQLRINRSIERILRNTNAKKITITSNRR 432

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           V   +  +K   I +Y  ++GV I+ +   +L    FY++
Sbjct: 433 VQSII--EKSNIIEKYMEKYGVDISTICNNKLDTDEFYVD 470



 Score = 91.6 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++L D S     +V  L D  + E   E   K+ I GNIY  KV      +Q+AF+D G
Sbjct: 2  KRILFDISDKF-YQVAYLEDGLLIEYHVEHSDKRSIVGNIYKGKVKNTIKGMQSAFIDIG 60

Query: 63 GNRHGFLPFLEI 74
           +++ +L   ++
Sbjct: 61 IDKNAYLFVNDV 72


>gi|313893052|ref|ZP_07826629.1| putative ribonuclease G [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442405|gb|EFR60820.1| putative ribonuclease G [Veillonella sp. oral taxon 158 str. F0412]
          Length = 475

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 231/457 (50%), Gaps = 7/457 (1%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           +        + E    ++ +    + ++ +  N + +   D+ G     +  +  ++  I
Sbjct: 19  NEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              +   Q +LVQ+VKEE   KGA VT  +SLAGR+ VL+P  S+G  IS+KIT+    +
Sbjct: 79  LPRLSVGQQVLVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-EAVR 136

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
              +      V  G G I+RTA A  +  EI RD EYL R W +V +    + +   +Y 
Sbjct: 137 AKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           + +   R +RD   +++ EIIV  + G     D +     S    V ++ D  PIF  + 
Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLMDLLGHGPTSQQIKVTRHRDSTPIFKANH 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409
           IE QL+ L   ++ LPS G + I+ TEAL   DVNS   T +    +  A   N EAA+E
Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLRD+ G+IVVDFIDM++K+N + + K L    K D+ +  V  IS+ GL+EM+R
Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKQNQQELLKVLSAQAKLDKMKTVVCGISSLGLVEMTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528
           +R R  +       C  C G GY+ S  +V + I+R + E         N+ +  H +V 
Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKSNLEIEVHPEVA 436

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            YL    +A + +     G  I++V+  +++ + + +
Sbjct: 437 QYLT---KAVLEDLGDSIGRKISIVVNPQISREGYSL 470



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 4  KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          K+L++    EE R+ V+  + ++ +   E   +  +  ++Y   V  V   +QAAFVD G
Sbjct: 3  KILVNVMR-EEIRMAVINEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61

Query: 63 GNRHGFL 69
          G+++ +L
Sbjct: 62 GSQNAYL 68


>gi|289523385|ref|ZP_06440239.1| cytoplasmic axial filament protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503077|gb|EFD24241.1| cytoplasmic axial filament protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 498

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/460 (27%), Positives = 224/460 (48%), Gaps = 5/460 (1%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           D     V I     L E+     + ++   E   +  ++++  +        E       
Sbjct: 14  DPEESRVAILEGGRLVELFAERMWERQRAGEIYKARIDNILPGMNAAFVNLGEGRNAFLY 73

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
                   IK    ++VQ+ K  R  KG  VT  +SL GRY VL+P  S      R   +
Sbjct: 74  LDDAKNAEIKPNGEIVVQVTKVARKGKGPRVTARISLPGRYVVLLPGASDIGVSRRIDES 133

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               +   +      VP G GVI+RT  +   +  IK +   L+ LW ++ +LAL   +P
Sbjct: 134 GEKER--LKGIARELVPDGFGVIVRTVASGVDEEVIKEEIGELLELWKDISDLALTMPSP 191

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y +  L+ + +RD   + +S++++     ++   D++         +V  Y    PI
Sbjct: 192 SLLYRDAGLLGKVLRDELDERVSQVVIDDPYEHKLVVDYISRHSHRVQPVVELYARNIPI 251

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F    IE  + +  + ++ L S G++ I+Q EA+  IDVN+G+      +  T L TN+E
Sbjct: 252 FEHFDIEKDISAALERKLWLSSGGFLYIDQVEAMTVIDVNTGKYVGTDNLRHTILDTNME 311

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA+EIARQLRLR + G+I+VDFIDM+ +++ + +   L+E LK DR + +V  +S  GL+
Sbjct: 312 AAKEIARQLRLRSIGGIIIVDFIDMDYQEDKQKLLDYLEELLKGDRYKSKVYGVSKLGLV 371

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E++R+R R  +    T+ C +C   G++  + +VA+ I R + + +L      +I+  HS
Sbjct: 372 EITRKRSRPDLKTYMTRPCPFCANMGWVLKEDAVAMDIKRFLRKVILSSKVEALILEAHS 431

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +  Y+ N     + ++   F  ++ V+   ELA   + +
Sbjct: 432 AIAEYIGNHF---LSQWAQEFEKALFVLQSKELAWDKYRL 468



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ++ +    EE+RV +L   R+ EL  E   ++Q  G IY A++  + P + AAFV+ G  
Sbjct: 8  IIANVIDPEESRVAILEGGRLVELFAERMWERQRAGEIYKARIDNILPGMNAAFVNLGEG 67

Query: 65 RHGFLPFLE 73
          R+ FL   +
Sbjct: 68 RNAFLYLDD 76


>gi|189463295|ref|ZP_03012080.1| hypothetical protein BACCOP_04012 [Bacteroides coprocola DSM 17136]
 gi|189430025|gb|EDU99009.1| hypothetical protein BACCOP_04012 [Bacteroides coprocola DSM 17136]
          Length = 524

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 207/401 (51%), Gaps = 4/401 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I  V++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  ++
Sbjct: 108 KDGTISNVLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W++       +   
Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEDTISKVQKATKL 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  Y E KD++ L+ P  + IV+ Y+   P
Sbjct: 226 PSLVYEETSRTVAMLRDLFNPSYENIYVNDESVYNEVKDYVTLIAPERSGIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF    I  Q+ S     V+  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 286 IFDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRSKSGNGQEANALDVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKKFTLHI 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           H  V  Y+     +   +++ +FG  I ++    LA   + 
Sbjct: 466 HPYVAAYINQGIVSLKRKWQMKFGFGIKIIPNQSLAFLEYK 506



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D    +E  + +L D  + E   E  +     GN+Y+ K+ ++ P L A FVD
Sbjct: 1  MTSELVVDV-QPKEISIALLEDKNLVEFQKEERNLSFSVGNMYVGKIRKLMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 60 VGFEKDAFLHYLDLGPQFNSYQKYLKQVISDRKKL 94


>gi|40062549|gb|AAR37494.1| cytoplasmic axial filament protein [uncultured marine bacterium
           106]
          Length = 489

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 132/413 (31%), Positives = 224/413 (54%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +     +       Q  I ++I+  Q +LVQ+ K   G KGA +T+++S+ GR  V +P 
Sbjct: 76  EHEIFGEPSNNNGEQQKIGQLIQEGQDVLVQVSKGPIGTKGARITSHVSIPGRNLVYLPA 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           T        +  N    +   +       P   G I+RT     ++ ++  D  YL+ +W
Sbjct: 136 TKTLGVS--RQINQEKERERLKEIVDRIRPENAGFIIRTVAEGHSEEDLHSDINYLVSIW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           D++ E      AP L++ + N+I R IRDL+  DI +++V  +  + + + F++  +P Y
Sbjct: 194 DDILEKYKTLPAPSLLHSDLNVIFRTIRDLFSADIRKLVVDDKSQFNKVRQFVRSYLPRY 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             ++  Y    P+F   GIE ++D     +V L S G+++I+QTEAL ++DVN+GR   +
Sbjct: 254 GSVIENYTKAEPVFDHYGIENEIDRALGNKVWLRSGGHLVIDQTEALTAVDVNTGRFVGK 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              E T L+TN+EAAEEI  QL+LR++ G+I++DFIDME +++ + V + LK+ L+ D+A
Sbjct: 314 ESHEKTILRTNIEAAEEIVYQLQLRNIGGIIIIDFIDMETQQHRQMVYQTLKDKLRSDKA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R ++  IS  GL+EM+R+R R ++       C YC G G I+S S+V     R V     
Sbjct: 374 RSKILQISEMGLVEMTRKRDRENLNRYLCDPCPYCDGTGQIKSPSTVCYEAFREVRRSCR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           + T  ++ +  HSDV  Y+  +++  +   E   G SI + +  EL  + F +
Sbjct: 434 RNTKGSVAIFLHSDVFKYIQEEEQEAVKFLEDEMGRSITIKLSDELHREQFEL 486



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MA +++I+ +   ETRV V+    + EL  E E   ++  NIY  KV  V P +++AFVD
Sbjct: 1  MAKEIIINHT-SHETRVAVIEGGELSELYHEREKTIRLVDNIYKGKVLNVLPGMESAFVD 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  +  FL   +I P+
Sbjct: 60 IGSEKAAFLHIDDILPE 76


>gi|282860075|ref|ZP_06269156.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
 gi|282587163|gb|EFB92387.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
          Length = 524

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 120/423 (28%), Positives = 212/423 (50%), Gaps = 3/423 (0%)

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
             V S+ + +             +   I++ ++  Q +LVQ+VKE    KG  +T  +S 
Sbjct: 85  KQVQSDRKRLYPIQKAAAQPDIDKDGTIKDAVQVGQEVLVQVVKEPISTKGPRLTGEISF 144

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRY VL+P  +K    S+  +     +   +       P   GVI+RT    +   E+ 
Sbjct: 145 AGRYIVLLPFGNKISVSSKIKSGEERAR--LKQLIRSITPKNFGVIVRTVAEGKRVAELD 202

Query: 263 RDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            + + L++ W++V      +   P LV+EE       IRDL+      I V+ E+     
Sbjct: 203 AEMQILLKRWNDVITKVQKTQDRPQLVFEETGRAVAMIRDLFNPTYENIYVNDEEICTAV 262

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + ++ ++ P  A IV+QY    PIF    I  Q+ S     +      Y+II  TEA+  
Sbjct: 263 RHYITMIAPEKASIVKQYTGKLPIFDNFDITRQIKSSFGKTINYGHGCYLIIEHTEAMHV 322

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSG   +E   E  AL TNL AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +
Sbjct: 323 VDVNSGNRAKEKGQEQNALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYE 382

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++ +++++DRAR  +  +S FGL++++RQR+R ++     + C  C G G +R+      
Sbjct: 383 RMSKNMQQDRARHNILPLSKFGLMQITRQRVRPAMDVDVDETCPTCFGTGKVRASILFTD 442

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +   ++  + ++      +H H  V  Y+     +   +++ ++G+ ++V+   +LA  
Sbjct: 443 QLEHKIDRLVNKFGVKKFYLHVHPYVAAYINKGFISIKRKWQMQYGMGVHVIPSQKLAYL 502

Query: 562 LFY 564
            + 
Sbjct: 503 QYE 505



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D ++ E   E        GNIY+AKV ++ P L A FV+
Sbjct: 1   MTSEIIIDA-QSKEISIALLEDKKLVEYQREPREANFSVGNIYVAKVKKLMPGLNACFVN 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104
            G  R  FL +L++         Y +   SDR+ L      A        
Sbjct: 60  VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKRLYPIQKAAAQPDIDKD 109


>gi|237715012|ref|ZP_04545493.1| ribonuclease G [Bacteroides sp. D1]
 gi|262409039|ref|ZP_06085584.1| ribonuclease G [Bacteroides sp. 2_1_22]
 gi|294647092|ref|ZP_06724698.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294807152|ref|ZP_06765969.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298481900|ref|ZP_07000090.1| ribonuclease G [Bacteroides sp. D22]
 gi|229444845|gb|EEO50636.1| ribonuclease G [Bacteroides sp. D1]
 gi|262353250|gb|EEZ02345.1| ribonuclease G [Bacteroides sp. 2_1_22]
 gi|292637556|gb|EFF55968.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294445652|gb|EFG14302.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298272122|gb|EFI13693.1| ribonuclease G [Bacteroides sp. D22]
          Length = 524

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 214/415 (51%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   +   +K  Q ++VQIVKE    KG  +T+ +S AGRY VL+P   K     +  ++
Sbjct: 108 KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W++       +   
Sbjct: 168 EERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKATKY 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+YEE +     +RDL+      I V+ E  Y E KD++ L+ P  A IV+ Y+   P
Sbjct: 226 PTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVSLIAPDRANIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           I+   GI  Q+ S     ++  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ N
Sbjct: 286 IYDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +TT+ C  C G G I+S      ++   ++  + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHV 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  V  Y+     +   +++ ++G  I ++   +LA   +        +  +   
Sbjct: 466 HPYVAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL ++ ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119
            G  +  FL +L++ P +  +    +Q L  +  +       +  D+   G V+      
Sbjct: 60  VGYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLTSISKATLLPDLDKDGTVSNTLKVG 119

Query: 120 LEEVAPIANFSQETEEESIISA 141
            E V  I      T+   + S 
Sbjct: 120 QEVVVQIVKEPISTKGPRLTSE 141


>gi|237723036|ref|ZP_04553517.1| ribonuclease G [Bacteroides sp. 2_2_4]
 gi|260173652|ref|ZP_05760064.1| ribonuclease G [Bacteroides sp. D2]
 gi|293372583|ref|ZP_06618965.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|299146729|ref|ZP_07039797.1| ribonuclease G [Bacteroides sp. 3_1_23]
 gi|315921914|ref|ZP_07918154.1| ribonuclease G [Bacteroides sp. D2]
 gi|229447558|gb|EEO53349.1| ribonuclease G [Bacteroides sp. 2_2_4]
 gi|292632392|gb|EFF50988.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|298517220|gb|EFI41101.1| ribonuclease G [Bacteroides sp. 3_1_23]
 gi|313695789|gb|EFS32624.1| ribonuclease G [Bacteroides sp. D2]
          Length = 524

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 214/415 (51%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   +   +K  Q ++VQIVKE    KG  +T+ +S AGRY VL+P   K     +  ++
Sbjct: 108 KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W++       +   
Sbjct: 168 EERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKATKY 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+YEE +     +RDL+      I V+ E  Y E +D++ L+ P  A IV+ Y+   P
Sbjct: 226 PTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIRDYVSLIAPDRANIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           I+   GI  Q+ S     V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ N
Sbjct: 286 IYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +TT+ C  C G G I+S      ++   ++  + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHV 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  V  Y+     +   +++ ++G  I ++   +LA   +        +  +   
Sbjct: 466 HPYVAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520



 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N++++D    +E  + +L D  + EL  E  +     GN+YL ++ ++ P L A FVD
Sbjct: 1   MTNELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119
            G  +  FL +L++ P +  +    +Q L  +  +       +  D+   G V+      
Sbjct: 60  VGYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLTSISKATLLPDLDKDGTVSNTLKVG 119

Query: 120 LEEVAPIANFSQETEEESIISA 141
            E V  I      T+   + S 
Sbjct: 120 QEVVVQIVKEPISTKGPRLTSE 141


>gi|325300025|ref|YP_004259942.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170]
 gi|324319578|gb|ADY37469.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170]
          Length = 524

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 121/415 (29%), Positives = 208/415 (50%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++  I  +++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  ++
Sbjct: 108 KEGSISNILQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W+        +   
Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKATKM 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  Y E K+++ L+ P    IV+ Y+   P
Sbjct: 226 PTLVYEETSRTVAMLRDLFNPSYENIYVNDETVYNEVKNYVALIAPERVGIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF    I  Q+ S     V+  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 286 IFDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVTTDENCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKKFTLHI 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  V  Y+     +   +++ ++G  I ++    LA   +        +  +   
Sbjct: 466 HPYVAAYINQGIVSLKRKWQMKYGFGIKIIPNQSLAFLQYKFYDAHNEEIDMKEE 520



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D    +E  + +L D  + E   E  +     GN+Y+ KV ++ P L A FVD
Sbjct: 1  MTSELVVDV-QPKEISIALLEDKNLVEFQKEERNLSFSVGNMYVGKVRKLMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 60 VGFEKDAFLHYLDLGPQFLSFQKYLKQVISDRKKL 94


>gi|262190354|ref|ZP_06048617.1| ribonuclease E [Vibrio cholerae CT 5369-93]
 gi|262033757|gb|EEY52234.1| ribonuclease E [Vibrio cholerae CT 5369-93]
          Length = 840

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 212/462 (45%), Gaps = 33/462 (7%)

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           +I RAIRD   +DI EI++     Y  A + ++L+ P +   V++YE   P+F    IE 
Sbjct: 1   MIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQIES 60

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+   IE+TAL TNLEAA+EIARQ
Sbjct: 61  QIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQ 120

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DRARVQ+G IS FGLLEMSRQR+ 
Sbjct: 121 LRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMSRQRLS 180

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+ E++  +C  CKG G IR   S+ALS+LR +EE  L+     ++      +  YLLN
Sbjct: 181 PSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVSIASYLLN 240

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           +KR +I   E    V I +V   ++    F + +    +      + +    +A    + 
Sbjct: 241 EKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKKLEAMKEAEG 300

Query: 594 IECVWQDEALLPIPKS--------------ESLEDIQDNIVSEESTGV------------ 627
            E V  +     I +                + +   +     E                
Sbjct: 301 KEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAEVKQPAQSGFFSRVFKA 360

Query: 628 ------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
                       +           D           +   +  D      +  N+   + 
Sbjct: 361 IASLFSTTPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDKNRRRGNEENNERNDK 420

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRWWKRR 722
                        P     E    N  ++ P  +++    RR
Sbjct: 421 ETSNNNRKPQERKPKQERGERNERNDRNERPETERSERQDRR 462


>gi|326798547|ref|YP_004316366.1| ribonuclease, Rne/Rng family [Sphingobacterium sp. 21]
 gi|326549311|gb|ADZ77696.1| ribonuclease, Rne/Rng family [Sphingobacterium sp. 21]
          Length = 517

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 150/575 (26%), Positives = 254/575 (44%), Gaps = 60/575 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++++D+S    T + +L+D ++ EL+ E         N Y                 
Sbjct: 1   MVKELIVDSSPETGTTIALLQDKQLVELNKE------QVNNNY----------------- 37

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                       +I+             L +   I    + A  D     D  +      
Sbjct: 38  ---------AVGDIY-------------LGRIKKIMPGLNAAFVDVGYSKDAFLHYLDLG 75

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +V  +   ++  +  S      + +   +D+             +   I E++    +L
Sbjct: 76  PQVQSLIKLTKLVKNGSYKDKLLNSLKLEKDIN------------KAGKISEILSRNMLL 123

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            VQI KE    KG  +++ LS+AGR+ VL+P  S   +IS+KI +  +R  LK+I  G++
Sbjct: 124 PVQIAKEPISTKGPRLSSDLSIAGRFVVLVPF-SDAVSISKKIKSNTERNRLKKIVEGIK 182

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   GVI+RT    +   E+++D   L+  W++  +   ++     +  E +     +R
Sbjct: 183 -PQNFGVIIRTVSEGKGVAELEKDLRDLITKWESFTKRLASTDPAKKILGEMDRTSTILR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+   + S I ++    Y E K +++ + P   +IV+ Y+   PIF   GIE Q+ +   
Sbjct: 242 DILTDEFSHIYINDPIIYEETKSYIQEISPDLEKIVKLYKHKDPIFEHFGIEKQIKAAFG 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419
             V L    Y++I  TEAL  IDVNSG  T      ED AL  N EAA+EIARQLRLRD+
Sbjct: 302 KIVNLQGGAYLVIEHTEALHVIDVNSGNRTANKENQEDNALLVNKEAAKEIARQLRLRDM 361

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G++VVDFIDM +  N + +   LKE +  DRA+  +   S FGL++++RQR+R  +   
Sbjct: 362 GGIVVVDFIDMHKPTNRKELHDYLKECMGNDRAKHTILPPSKFGLVQITRQRVRPEMTVV 421

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T + C  C G G IR+   +   I  ++   L +    NI +  H  +  ++     +  
Sbjct: 422 TNEKCPACGGTGEIRASIVLMDDIESNLSYVLNEQNEKNITLCVHPYIEAFIKKGFMSRR 481

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           +++  R+G  I V          F+       +  
Sbjct: 482 LKWFFRYGKWIKVKAISSYFMNEFHFLNAKEEEIK 516


>gi|226330544|ref|ZP_03806062.1| hypothetical protein PROPEN_04462 [Proteus penneri ATCC 35198]
 gi|225201339|gb|EEG83693.1| hypothetical protein PROPEN_04462 [Proteus penneri ATCC 35198]
          Length = 451

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 202/392 (51%), Gaps = 2/392 (0%)

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +A  +R Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS RST
Sbjct: 13  DFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 72

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           R   IE+TA  TNLEAA+EIARQLRLRDL GLIV+DFIDM   ++ R VE +++E++++D
Sbjct: 73  RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 132

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           RAR+Q+G IS FGLLEMSRQR+  S+ ES+  VC  C G G IR   S++LS+LR +EE 
Sbjct: 133 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEEE 192

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569
            L+   H +       +  YLLN+KR  + + E R   V + +V   ++    F + +  
Sbjct: 193 ALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQSNVKVVIVPNDQMQTPHFSVIRVR 252

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQ-DEALLPIPKSESLEDIQDNIVSEESTGVI 628
             + + +  + +    ++   + + + V +      P   +  L++   +  + +S    
Sbjct: 253 KGEEITSLSYNLAQFHESQLNEADDDVVTERKAPEQPAISAFGLQEEDTSEATTKSKKAP 312

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           + + +  +  +       + +    S++ +   +      +P +    N           
Sbjct: 313 QPQAKTAKTEQAQATGFFSSIAKFFSNLFSSEPEPVVTQEKPQENKKENNENRRERRNNN 372

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
           N   +          + ++++    +K R  K
Sbjct: 373 NRRNNNNRRDRDNDRNRDNANSEDNRKNRNQK 404


>gi|281420826|ref|ZP_06251825.1| ribonuclease G [Prevotella copri DSM 18205]
 gi|281405118|gb|EFB35798.1| ribonuclease G [Prevotella copri DSM 18205]
          Length = 523

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 128/423 (30%), Positives = 214/423 (50%), Gaps = 3/423 (0%)

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
             V S+ + +   S      + ++   IQ V+K  Q +LVQIVKE    KG  +T  +S 
Sbjct: 85  KQVQSDRKKLFPFSKASKMPELEKDGSIQNVLKAGQEVLVQIVKEPISTKGPRLTGEISF 144

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRY VLMP   K    S+  +     + LK++   ++     GVI+RT    +   E+ 
Sbjct: 145 AGRYLVLMPFGDKVSVSSKIKSGEERSR-LKQLIHSIKPK-NCGVIVRTVAEGKKVAELD 202

Query: 263 RDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            + + L++ W++           P L +EE       +RDL+      I V+ E   +E 
Sbjct: 203 AELKVLVKRWEDAIAKVQKTQQRPQLAFEETGRAVALLRDLFNPSYENIYVNNEDVMKEV 262

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           K+++ L+ P  A IV+ Y    PIF    I  Q+ +     V      Y+II  TEAL  
Sbjct: 263 KNYVSLIAPEKAGIVKLYTGKVPIFDNFSITKQIKAGFGRVVNYKHGAYLIIEHTEALHV 322

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSG  TRE   E  AL  NL AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +
Sbjct: 323 VDVNSGNRTREKGQEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQLLYE 382

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++ ++++KDRA+  +  +S FGL++++RQR+R ++  +  + C  C G G I+S      
Sbjct: 383 RMCKNMQKDRAKHNILPLSKFGLMQITRQRVRPAMDVTVDETCPTCFGTGKIKSSILFTD 442

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            + R ++  + +       ++ +  V  ++     +    ++ ++G   NV+   +LA  
Sbjct: 443 QLERKIDRLVNKIGVKKFTLYVNPYVAAFINKGFISLKRRWQFKYGFGFNVIPSQKLAFL 502

Query: 562 LFY 564
            + 
Sbjct: 503 QYE 505



 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +   + ++ D ++ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVVIDVQQKD-ISIALMEDKQLVEYQNEPREASFSVGNIYIAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHP------DYYQIPFSDRQALLKESNIAQTDSEAVA 104
            G  R  FL +L++         Y +   SDR+ L   S  ++       
Sbjct: 60  VGYERDAFLHYLDLGSHFNSYQKYLKQVQSDRKKLFPFSKASKMPELEKD 109


>gi|260548915|ref|ZP_05823137.1| ribonuclease G [Acinetobacter sp. RUH2624]
 gi|260408083|gb|EEX01554.1| ribonuclease G [Acinetobacter sp. RUH2624]
          Length = 488

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 127/412 (30%), Positives = 222/412 (53%), Gaps = 4/412 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            + V  + +    + E++   QIL VQ++K+  G KGA ++T LS+  RY VLMP  +  
Sbjct: 75  NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
             +S++I +  +R+ L+ I  G++        VI+RTA       EI +D  YL +LW+ 
Sbjct: 135 G-VSQRIESEEERERLRNIIEGIQAEHNLPGSVIVRTAAEGVDDAEIAQDMCYLSKLWEY 193

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++   ++   P L++EE  L +R IRDL  ++ ++I V   + + + ++F+   +P+   
Sbjct: 194 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 253

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +  Y    P+F    +E  +    QT V L S GY++I+QTEA+ +IDVN+G       
Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +EDT  +TN+EA + IARQLRLR+L G+I++DFIDM+E  +   V ++ ++ L++D A+ 
Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 373

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513
           ++  +S  GL+EM+R+R R S+     + C  C+G G++++  +V   I R +  Y    
Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +     V  H  V+  LL  +   + + E      I   +      + + I
Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E RV ++ +  V EL  E   K+ + GNIY  KV RV P +QAAFVD
Sbjct: 5  MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 64 IGLSRTAFLHINDM 77


>gi|325856414|ref|ZP_08172130.1| S1 RNA binding domain protein [Prevotella denticola CRIS 18C-A]
 gi|325483598|gb|EGC86570.1| S1 RNA binding domain protein [Prevotella denticola CRIS 18C-A]
          Length = 523

 Score =  237 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 129/497 (25%), Positives = 227/497 (45%), Gaps = 16/497 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128
           P     ALL++  + +   E      + G++ +               D   E  A +  
Sbjct: 11  PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
               ++  S       V S+ + +            ++   +Q  ++  Q ++VQIVKE 
Sbjct: 71  LDLGSQFSSYAKYLKQVQSDRKRLYPIQKASRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
              KG  +T  +S AGR+ VL+P   K    S+  +     +   +       P   GVI
Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIRSGEERAR--LKQLIQSITPKNFGVI 188

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307
           +RT    +   E+  + + LM  W+        +   P L++EE       +RDL+    
Sbjct: 189 VRTVAEGKRVAELDAEMKVLMSRWNEAITRVQKTQERPQLIFEETGRAVAMLRDLFNPTY 248

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             I V+  +     + ++ L+ P  A IV++Y    PIF    +  Q+ S     +    
Sbjct: 249 ENIYVNDNEICTAVRHYVSLIAPEKAGIVKKYNGKVPIFDNFDVTKQIKSSFGKTINYGH 308

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
             Y+II  TEA+  +DVNSG  T+E   E  AL TNL AA+E+ARQLRLRD+ G+IVVDF
Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R  +     + C  C
Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDEDCPTC 428

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G G IRS       + R +   + +       +H H  V  Y+     +   +++ ++G
Sbjct: 429 FGTGKIRSSILFTDQLERKIGRLVNKVGVKKFYLHVHPYVAAYINKGFVSLKRKWQIKYG 488

Query: 548 VSINVVIGIELADKLFY 564
           + ++++   +LA   + 
Sbjct: 489 MGVHIIPSQKLAFLQYE 505



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D R+ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97
            G  R  FL +L++         Y +   SDR+ L      ++
Sbjct: 60  VGYERDAFLHYLDLGSQFSSYAKYLKQVQSDRKRLYPIQKASR 102


>gi|327312504|ref|YP_004327941.1| S1 RNA binding domain-containing protein [Prevotella denticola
           F0289]
 gi|326944947|gb|AEA20832.1| S1 RNA binding domain protein [Prevotella denticola F0289]
          Length = 523

 Score =  237 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 129/497 (25%), Positives = 228/497 (45%), Gaps = 16/497 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128
           P     ALL++  + +   E      + G++ +               D   E  A +  
Sbjct: 11  PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
               ++  S       V S+ + +            ++   +Q  ++  Q ++VQIVKE 
Sbjct: 71  LDLGSQFSSYAKYLKQVQSDRKRLYPIQKASRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
              KG  +T  +S AGR+ VL+P   K    S+  +     +   +       P   GVI
Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIRSGEERAR--LKQLIQSITPKNFGVI 188

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307
           +RT    +   E+  + + LM  W+        +   P L++EE       +RDL+    
Sbjct: 189 VRTVAEGKRVAELDAEMKVLMSRWNEAITKVQKTQERPQLIFEETGRAVAMLRDLFNPTY 248

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             I V+  +     + ++ L+ P  A IV++Y    PIF    +  Q+ S     +    
Sbjct: 249 ENIYVNDNEICTAVRHYVSLIAPEKAGIVKKYNGKVPIFDNFDVTKQIKSSFGKTINYGH 308

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
             Y+II  TEA+  +DVNSG  T+E   E  AL TNL AA+E+ARQLRLRD+ G+IVVDF
Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R  +     + C  C
Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDEDCPTC 428

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G G IRS       + R ++  + +       +H H  V  Y+     +   +++ ++G
Sbjct: 429 FGTGKIRSSILFTDQLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGFVSLKRKWQIKYG 488

Query: 548 VSINVVIGIELADKLFY 564
           + ++++   +LA   + 
Sbjct: 489 MGVHIIPSQKLAFLQYE 505



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D R+ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97
            G  R  FL +L++         Y +   SDR+ L      ++
Sbjct: 60  VGYERDAFLHYLDLGSQFSSYAKYLKQVQSDRKRLYPIQKASR 102


>gi|225012359|ref|ZP_03702795.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-2A]
 gi|225003336|gb|EEG41310.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-2A]
          Length = 517

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 128/565 (22%), Positives = 230/565 (40%), Gaps = 60/565 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  SH       +L+D ++ EL+ E E  K   G+I++ K+ +  P L AAF+D
Sbjct: 1   MNKELII-RSHSSAVDFALLKDGKLIELNKEVEDNKFSVGDIFVGKIRKAIPGLNAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  + GFL + ++ P   ++P      L+K      T          +       ++ +
Sbjct: 60  VGHEKDGFLHYHDLGP---KLPS-----LIKYIKQISTGKNK-----DYLLKQFRYENDI 106

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+   + +     +   +      + +    +              +Y +     +R  +
Sbjct: 107 EKDGNVGDVLSPKQTVLVQVVKEPISTKGPRLSSE------ISLAGRYMVLMPFSDRVSI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I      N+   +   +   G   ++                               
Sbjct: 161 SQKIEDRAEKNRLKKLVQSIRPKGFGLII------------------------------- 189

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                  +      +    +I++       L   ++++      P  V  E N     +R
Sbjct: 190 -----RTVAEGQKVAALDADIQQLLTRWKNLSAKLKQID---KYPTKVLSEINRSSSILR 241

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++  + + I V   +   E +D+++ + P    IV+ YE+  PIF + GIE Q+ S   
Sbjct: 242 DIFDDNFTGIHVDDAEMQSEIQDYIESIAPDKKGIVKLYENHLPIFEKFGIERQIKSAFG 301

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
           T V++    Y++I  TEAL  IDVNSG RS R    E TAL+ N+ +A EIARQLRLRD+
Sbjct: 302 TTVSMQKGAYLVIEHTEALHVIDVNSGNRSNRSKSQEQTALEVNMISATEIARQLRLRDM 361

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFID+   +N + + + L   +  DR + ++   S FGL++++RQR+R  +   
Sbjct: 362 GGIIVVDFIDLNSNENRKKLFEHLCNEMSTDRTKHKILPPSRFGLIQITRQRVRPEMNIK 421

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +      G           ++   S      +     I +H H  V  YLLN   +  
Sbjct: 422 TKEPNPNQNGEVEAPIILIEKINAELSKITKNKRNDKEKIHLHLHPFVAAYLLNGFPSQR 481

Query: 540 VEYEARFGVSINVVIGIELADKLFY 564
           +++   +   IN+V         F 
Sbjct: 482 LKWYFEYKKWINIVPRHAYQYLEFR 506


>gi|198277145|ref|ZP_03209676.1| hypothetical protein BACPLE_03353 [Bacteroides plebeius DSM 17135]
 gi|198269643|gb|EDY93913.1| hypothetical protein BACPLE_03353 [Bacteroides plebeius DSM 17135]
          Length = 524

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 206/401 (51%), Gaps = 4/401 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I  V++  Q ++VQIVKE    KG  +T  LS AGRY VL+P   K     +  ++
Sbjct: 108 KDGTISSVLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W+        +   
Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKATKL 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE +     +RDL+      I V+ E  + E KD++ L+ P    IV++Y    P
Sbjct: 226 PSLVYEETSRTVAMLRDLFNPSYENIYVNDETVFNEVKDYVALIAPERTGIVKRYTGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF   GI  Q+ S     V+  S  Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 286 IFDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRSKSTNGQEANALDVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   +N + + +++ ++++KDRA+  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +T + C  C G G I+       ++   ++  + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVTTDEDCPVCFGKGKIKPSILFTDTLESKIDYMVNKLKVKKFTLHI 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           H  V  Y+     +   +++ ++G  I +V    LA   + 
Sbjct: 466 HPYVAAYVNQGLMSMKRKWQMKYGFGIKIVPNQNLAFLQYK 506



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D    +E  + ++ D  + E   E  +     GN+Y+ KV ++ P L A FVD
Sbjct: 1  MTSELVVDV-QPKEISIALMEDKNLVEFQKEERNLSFSVGNMYVGKVRKLMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  +  FL +L++ P       Y +   SDR+ L
Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVISDRKKL 94


>gi|319942624|ref|ZP_08016932.1| RNase G [Sutterella wadsworthensis 3_1_45B]
 gi|319803803|gb|EFW00735.1| RNase G [Sutterella wadsworthensis 3_1_45B]
          Length = 498

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 122/400 (30%), Positives = 200/400 (50%), Gaps = 2/400 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+ ++   Q L+VQ+ K+  G KGA +TT +SLAGR  V +PN S      R     +
Sbjct: 96  KPIESLLHEGQRLMVQVAKDPIGTKGARLTTTISLAGRKLVYLPNDSHIGVSQRIEDAAL 155

Query: 228 DRKNLKEIARGLEVPAGMGVILRT-AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             +         +     G I+RT A    T+ E   D  YL RLWD +R  A     P 
Sbjct: 156 REELRTLATTVRQKDEKGGYIVRTCAEEGATEQEFLSDMAYLARLWDGIRHRAQEVKKPT 215

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++  L +R +RD+  +  + I V  E  Y    +F K  +P+    +  YE   P+F
Sbjct: 216 LLYQDLTLAQRTLRDMVHEGTAVIEVDDEAEYEALLEFAKHFVPAAVDKLHHYEGERPLF 275

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
            +  I+ +++      V L S GY++ +QTEA+ +IDVN+G    +    DT  +TNLEA
Sbjct: 276 EQYDIDEEIELALGRRVELKSGGYLVFDQTEAMSTIDVNTGAYVGKRDFSDTVFKTNLEA 335

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+ IARQLRLR+L G+I+VDFIDM + ++  +V  +L+ ++  DR ++ V   +  GL+ 
Sbjct: 336 AQVIARQLRLRNLGGIIIVDFIDMAKDEHREAVLSELRRAVLLDRTKMTVSGFNELGLVA 395

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHS 525
           M+R+R R S+  +  + C+ C G G I++  +V   ILR +      Y       +    
Sbjct: 396 MTRKRTRESLAHTLCETCSVCGGRGEIKTARTVCYDILREITRLAKLYKEMKEFRILASQ 455

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            V+  LL ++   +   +      I + +      + + +
Sbjct: 456 TVIDLLLEEESQALELLQQAIERPILLEVESVYTQEQWDV 495



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++LI+ S  EETRV +L D  +++L  E    + + GN+Y  +V RV P +Q+AF+D G
Sbjct: 15 EQILINTSR-EETRVAILDDGLLQDLFIERACARGLVGNVYWGQVVRVLPGMQSAFLDVG 73

Query: 63 GNRHGFLPFLEI 74
            R  FL   EI
Sbjct: 74 LERTAFLHIAEI 85


>gi|218962160|ref|YP_001741935.1| ribonuclease G [Candidatus Cloacamonas acidaminovorans]
 gi|167730817|emb|CAO81729.1| ribonuclease G [Candidatus Cloacamonas acidaminovorans]
          Length = 505

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 132/484 (27%), Positives = 241/484 (49%), Gaps = 8/484 (1%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A+L++S + +   E        G++              A F +   E +    
Sbjct: 16  PLEKRVAVLEDSRLVELFVERREQQNIVGNI-YKGIVKDVLPGMGAAFIEIGLERTAFLH 74

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +D+V +  D+   +        +    I +++K  Q ++VQ+ K   G+KGA +T  +S
Sbjct: 75  YSDIVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKGPIGSKGARLTGQIS 134

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           + G+Y VL PN  K     +  +     +             G G+I+RT      + + 
Sbjct: 135 IPGKYLVLFPNKDKIAVSRKIYSQAERSRIR--NLLSGIKDPGYGLIVRTEAEGCEEDDF 192

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           + +++ L++ W  + +    + AP  V+EE  L    IRDL+ +++  +++  +   +  
Sbjct: 193 QTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENVDRLVIDDKNFAKRI 252

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
              +  + P     +  Y +  PIF   GIE +++++  + + LPS G + I QTEALV+
Sbjct: 253 ISQLTDISPELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLPSGGNIKIEQTEALVA 312

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G  T +   ++T  +TNLEAA EIARQ+RLRDL+G+I++DFIDM E+K    V +
Sbjct: 313 IDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIIDFIDMVEEKYKNEVLE 372

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            LK+ L++DRA+ +V + +  GL+E++R+R+R++++ + +  C +C G+G I S+ SV +
Sbjct: 373 MLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPFCNGSGRILSKDSVIM 432

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            I R +          N+ +  + D    LLN  +    ++ A +   I       +   
Sbjct: 433 RIYRWLNRSDYFIKDKNLRIVVNPD----LLNHIKQHNEDFTA-YKEQIEFTSDPSIRID 487

Query: 562 LFYI 565
            F +
Sbjct: 488 QFKV 491



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 2  ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            +++++  H  E RV VL D+R+ EL  E   ++ I GNIY   V  V P + AAF++ 
Sbjct: 7  NTEIIVNV-HPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGAAFIEI 65

Query: 62 GGNRHGFLPFLEIHPDYYQI 81
          G  R  FL + +I  D+  I
Sbjct: 66 GLERTAFLHYSDIVMDFLDI 85


>gi|160886224|ref|ZP_02067227.1| hypothetical protein BACOVA_04231 [Bacteroides ovatus ATCC 8483]
 gi|156108109|gb|EDO09854.1| hypothetical protein BACOVA_04231 [Bacteroides ovatus ATCC 8483]
          Length = 524

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 215/415 (51%), Gaps = 4/415 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   +   +K  Q ++VQIVKE    KG  +T+ +S AGRY VL+P   K     +  ++
Sbjct: 108 KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSS 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
               +   +       P   GVI+RT    +   E+  + + L++ W++       +   
Sbjct: 168 EERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKATKY 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+YEE +     +RDL+      I V+ E  Y E +D++ L+ P  A IV+ Y+   P
Sbjct: 226 PTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIRDYVSLIAPDRANIVKLYKGQLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           I+   GI  Q+ S     V+  S  Y+II  TEAL  +DVNSG  T+    ++  AL+ N
Sbjct: 286 IYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++  +++KDRAR  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +TT++C  C G G I+S      ++   ++  + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHV 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           H  V  Y+     +   +++ ++G  I ++   +LA   +        +  +   
Sbjct: 466 HPYVAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520



 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M N++++D    +E  + +L D  + EL  E  +     GN+YL ++ ++ P L A FVD
Sbjct: 1   MTNELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119
            G  +  FL +L++ P +  +    +Q L  +  +       +  D+   G V+      
Sbjct: 60  VGYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLTSISKATLLPDLDKDGTVSNTLKVG 119

Query: 120 LEEVAPIANFSQETEEESIISA 141
            E V  I      T+   + S 
Sbjct: 120 QEVVVQIVKEPISTKGPRLTSE 141


>gi|332826705|gb|EGJ99527.1| hypothetical protein HMPREF9455_04123 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 524

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 132/500 (26%), Positives = 228/500 (45%), Gaps = 11/500 (2%)

Query: 73  EIHPDYYQIPFSDRQALLKESNIAQTDSEA-------VADDVTHGDVTIPNDHSLEEVAP 125
           ++ P+   I   + + L++     +  S A           +  G      D   ++ A 
Sbjct: 8   DVQPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVDIGYKKDAF 67

Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185
           +       + +S+       + + +     S   +     +   I +++K  Q +LVQI 
Sbjct: 68  LHYLDLGAQFKSVDKFYKQALVDKKKFPNISKMKLENDIDKDGSISDILKPGQEILVQIA 127

Query: 186 KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245
           KE    KG  +T+ LSLAGR+ V++P   K     +  +     +           P   
Sbjct: 128 KEPISTKGPRLTSELSLAGRFLVVIPFNDKVSVSQKIKSKEERAR--LRQLIQSIKPKNF 185

Query: 246 GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK 305
           GVI+RT    +   ++  + + L++ WD+       S  P LV+EE   I   +RD++  
Sbjct: 186 GVIVRTVAEGKKVADLDTELKTLVKRWDDNLPKIQKSKLPTLVFEETGRIVALLRDVFNS 245

Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365
              EI V+      + KD++  + P    IV+QY+    IF   G+  Q+ +L    VT 
Sbjct: 246 SFQEIHVNDPDTCNQIKDYISFIAPEKKNIVKQYDGDLTIFDNFGVTKQIKALFGKTVTF 305

Query: 366 PSRGYVIINQTEALVSIDVNSG--RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            +  Y+II  TEAL  IDVNSG      E   E+ A + N  AAEEI RQLRLRD+ G+I
Sbjct: 306 RNGAYLIIEHTEALHVIDVNSGNRSKNPEAGQENNAWEVNSAAAEEITRQLRLRDMGGII 365

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDM E ++   +  +++E +  DRA+  +  +S FGL++++RQR+R  +  +TT++
Sbjct: 366 VIDFIDMTEGEHRSQLITRMQELMANDRAKHNILPLSKFGLMQITRQRVRPEMEITTTEI 425

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G IR       ++   +   +         +H H  V  ++     +   +++
Sbjct: 426 CPNCFGKGEIRPSILFTDTLRMKISYLVKDLKVKKFTLHVHPYVAAFINQGLVSLKWQWK 485

Query: 544 ARFGVSINVVIGIELADKLF 563
            R+   IN++    LA   +
Sbjct: 486 WRYSRGINILPNQNLALLEY 505



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 2/142 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D     E  + VL D ++ EL  E        GNIY  KV ++ P L AAFVD
Sbjct: 1   MNSELVVDV-QPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119
            G  +  FL +L++   +  +    +QAL+ +          + +D+   G ++      
Sbjct: 60  IGYKKDAFLHYLDLGAQFKSVDKFYKQALVDKKKFPNISKMKLENDIDKDGSISDILKPG 119

Query: 120 LEEVAPIANFSQETEEESIISA 141
            E +  IA     T+   + S 
Sbjct: 120 QEILVQIAKEPISTKGPRLTSE 141


>gi|51891564|ref|YP_074255.1| ribonuclease G [Symbiobacterium thermophilum IAM 14863]
 gi|51855253|dbj|BAD39411.1| ribonuclease G [Symbiobacterium thermophilum IAM 14863]
          Length = 567

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 129/429 (30%), Positives = 220/429 (51%), Gaps = 3/429 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
             E    +  R+  I E+++  Q +LVQ+ KE  G KGA VT  ++L GR+ VLMP+   
Sbjct: 81  EGETPLPRSGRRPTIGELVRTGQDILVQVAKEPIGTKGARVTRNITLPGRFLVLMPHVDY 140

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                R        ++  +       P GMG+I+RT     ++ E+  D  +L R W  +
Sbjct: 141 VGVSRRIT--DERERDRLKQIAHAVKPDGMGLIVRTVAEGASEEELAHDAAFLERHWQQI 198

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
              A  + AP LV+ +  LI R +RD     +S  +V     Y  A   ++L  P     
Sbjct: 199 AARARTARAPSLVHHDQGLIHRLVRDGLDDSVSLFLVDQRSAYDTALAVVELHAPQLKDR 258

Query: 336 VRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
           V+ Y      +F   G+E++++   +  V L S GY+II+QTEAL +IDVN+G+      
Sbjct: 259 VKLYTRSDQTLFDYYGVEMEIEKALRRRVWLRSGGYIIIDQTEALTAIDVNTGKFVGSTN 318

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           + DT  +TNLEAA EIARQLRLRD+ G+I++DFIDM+ + + + V + L+E+L++DR R 
Sbjct: 319 LADTVFRTNLEAAREIARQLRLRDIGGIIIIDFIDMDREDHRQQVIQALEEALRRDRTRA 378

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            +  ++  GLLEM+R++ R ++ E  TK C  C G G + ++ ++A  +   +   + Q 
Sbjct: 379 NILGLTQLGLLEMTRKKSRQNLSEVLTKPCPACDGRGKVLNEQTMAHRVRAEIRRIMKQS 438

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
           ++  +++  H  V   ++    A +   E     +I +    E++   + ++     + +
Sbjct: 439 SSEALLMEVHPSVAALVIRPGGANLRALEEELARTIYIRGNSEVSPDSWSLKALGTREEV 498

Query: 575 VNTGHKVGS 583
                 V +
Sbjct: 499 EAKALPVSA 507



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L+     ++TR  VL D  + EL  E    ++I GNIY  KV  V P +QAAFV+
Sbjct: 1  MRKEILLTVDI-DQTRAAVLEDGELVELYIEQPVHERIVGNIYKGKVENVLPGMQAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R+ FL   +  P
Sbjct: 60 IGLERNAFLYVDDAQP 75


>gi|325270176|ref|ZP_08136783.1| ribonuclease G [Prevotella multiformis DSM 16608]
 gi|324987477|gb|EGC19453.1| ribonuclease G [Prevotella multiformis DSM 16608]
          Length = 523

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 130/497 (26%), Positives = 228/497 (45%), Gaps = 16/497 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128
           P     ALL++  + +   E      + G++ +               D   E  A +  
Sbjct: 11  PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
                +  S       V S+ + +            ++   +Q  ++  Q ++VQIVKE 
Sbjct: 71  LDLGGQFNSYAKYLKQVQSDRKRLYPIQKASRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
              KG  +T  +S AGR+ VL+P   K    S+  +     +   +       P   GVI
Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIRSGEERAR--LKQLIQSITPKNFGVI 188

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307
           +RT    +   E+  + + L+  W+   +    +   P L++EE       +RDL+    
Sbjct: 189 VRTVAEGKRVAELDAEMKVLLNRWNEAIQRVQKTQERPQLIFEETGRAVAMLRDLFNPTY 248

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             I V+ E+     + ++ L+ P  A IV++Y    PIF    +  Q+ S     V    
Sbjct: 249 ENIYVNDEEICTAVRHYVSLIAPEKAGIVKRYTGKVPIFDNFDVTKQIKSSFGKTVNYGH 308

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
             Y+II  TEA+  +DVNSG  T+E   E  AL TNL AA+E+ARQLRLRD+ G+IVVDF
Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++     + C  C
Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDVDVDENCPTC 428

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G G IRS       + R ++  + +       +H H  V  Y+     +   +++ ++G
Sbjct: 429 FGTGKIRSSILFTDQLERKIDRLVNKVGVRKFYLHVHPYVAAYINKGLVSLKRKWQMKYG 488

Query: 548 VSINVVIGIELADKLFY 564
             ++V+   +L    + 
Sbjct: 489 TGVHVIPSQKLGFLQYE 505


>gi|90415740|ref|ZP_01223674.1| cytoplasmic axial filament protein [marine gamma proteobacterium
           HTCC2207]
 gi|90333063|gb|EAS48233.1| cytoplasmic axial filament protein [marine gamma proteobacterium
           HTCC2207]
          Length = 497

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 119/410 (29%), Positives = 211/410 (51%), Gaps = 11/410 (2%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I++++ + Q + VQ++K+  G KGA ++  LS+A  Y V M          R  + 
Sbjct: 86  GEPDIRKLLHDGQQIAVQVIKDPVGTKGARLSAQLSVASHYLVYMVEGKHLGVSQRIESE 145

Query: 226 PVDRKNLKEIARGL----------EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
               + LK +   +          + P   G ILRTA     + E++    +L RLW ++
Sbjct: 146 SERER-LKLMLSTIVDEVSAEEGVKNPLSGGYILRTAADGAEEAELRNTVRFLRRLWQDI 204

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
            +  +N+ AP  +YE+  L KR +RD+   ++ +I V   + + +   F     P   R+
Sbjct: 205 LQRKVNAKAPSCLYEDLPLYKRVLRDMVGTEVEKICVDSREVFDKLTHFGNKFNPDMVRL 264

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    P+F+  GIE ++    Q +V L S G+V+ +QTEA+ +IDVN+G       +
Sbjct: 265 LEHYPGERPLFYMHGIEEEIAKALQRKVMLKSGGHVVFDQTEAMSTIDVNTGAFVGHRNL 324

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           E+T  +TNLEAA  IARQ+R+R+L G+I++DFIDM   ++ R V + L+++L +D  R  
Sbjct: 325 EETIYKTNLEAAAVIARQMRMRNLGGIIIIDFIDMHGAEHRRQVLRALEKALARDPVRTT 384

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           +  ++  GL++ +R+R   S+ +   + C  C G GY++S  S++  ILR +      Y 
Sbjct: 385 ISGVTELGLVQTTRKRTSQSLGQILCEECPTCFGRGYVKSAESMSYEILRDILRVARAYE 444

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             N+ V   + V+  L ++  + + + E     +I   +    A + F I
Sbjct: 445 CDNLRVLASAPVIERLTDEDSSQVADLELFINCTIQFRVESLYALEQFDI 494



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV ++ +   +E+  E  +K+ + GNIY  KV RV P +QAAFVD
Sbjct: 1  MSQELLVNIT-PMETRVALVENGVPQEVCVERNNKRGLVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R  FL   ++ P
Sbjct: 60 IGEARTAFLHIDDLLP 75


>gi|297181858|gb|ADI18037.1| ribonucleases g and e [uncultured delta proteobacterium
           HF0200_19J16]
          Length = 489

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/413 (30%), Positives = 227/413 (54%), Gaps = 2/413 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +     + P++   +  I ++I+  Q +LVQ+ K   G KGA +T ++S+ GR  V +P 
Sbjct: 76  ENEILGEPPRENGEKKEIGQLIQEGQDVLVQVSKGPIGTKGARITNHVSIPGRNLVYLPT 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
           T        +  +    +   +       P   G I+RT     ++ ++  D  YL+ +W
Sbjct: 136 TQTLGVS--RQISMERERERLKEIVDRLRPENSGFIIRTVAEGHSEEDLHSDINYLVSIW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E   +  AP L++ + N++ R IRD++  D+ +++V  +  +++ + F++  +P Y
Sbjct: 194 SDILERFSSLPAPSLLHSDLNIVFRTIRDIFSSDVKKLVVDDKTQFQKIRQFVRSYLPRY 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
           + ++  Y  P P+F    IE ++D     +V L S G+++I+QTEAL S+DVN+GR   +
Sbjct: 254 SSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRSGGHLVIDQTEALTSVDVNTGRFVGK 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              E+T  +TN+EAAEEI  QL+LR++ G+I++DFIDM+ +++ + V + LK+ L+ D+A
Sbjct: 314 ESHENTIFRTNIEAAEEIVYQLQLRNIGGIIIIDFIDMDSQQHRQMVYQTLKDHLRTDKA 373

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R ++  IS  GL+EM+R+R R ++       C YC G G I+S S+V+    R +     
Sbjct: 374 RSKILQISEMGLVEMTRKRDRENLSRYLCDPCPYCDGTGQIKSSSTVSYEAFREIRRSCR 433

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           Q T  +I +  +SDV  Y+  +++  +   E   G +I      +L  + F +
Sbjct: 434 QNTKGSITLILNSDVHRYIQQEEQEAVELLEEEMGRTITFKFSDDLHHEQFEL 486



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/482 (12%), Positives = 129/482 (26%), Gaps = 45/482 (9%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I+ +   ETRV V+    + EL  E E   ++  NIY  KV  V P +++AFVD
Sbjct: 1   MTKEIIINHT-SHETRVAVMEGGLLTELHHEREKVMRVVDNIYKGKVLNVLPGMESAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL   +I P+           +L E      + + +   +  G   +      
Sbjct: 60  IGEERAAFLHIDDILPE---------NEILGEPPRENGEKKEIGQLIQEGQDVLVQVSKG 110

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                 A  +                  +   +  S E   ++   +  +  +       
Sbjct: 111 PIGTKGARITNHVSIPGRNLVYLPTTQTLGVSRQISMERERERL--KEIVDRLRPENSGF 168

Query: 181 LVQIVKEERGNKGAAVTTYLSLA---------GRYSVLMPNTSKGETISRKITNPVDRKN 231
           +++ V E    +         ++                   S    + R I +      
Sbjct: 169 IIRTVAEGHSEEDLHSDINYLVSIWSDILERFSSLPAPSLLHSDLNIVFRTIRDIFSSDV 228

Query: 232 LKEIARGLEVPAGMGVILRTA--------GASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            K +         +   +R+                 +   +     +   +        
Sbjct: 229 KKLVVDDKTQFQKIRQFVRSYLPRYSSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRS 288

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
             HLV ++   +     +       E   +             +       I        
Sbjct: 289 GGHLVIDQTEALTSVDVNTGRFVGKESHENTIFRTNIEAAEEIVYQLQLRNIGGIIIIDF 348

Query: 344 PIFFRSGIEVQL----------DSLHQTEVTLPSRGYVIINQT---EALVSIDVNSGRST 390
                      +          D      + +   G V + +    E L     +     
Sbjct: 349 IDMDSQQHRQMVYQTLKDHLRTDKARSKILQISEMGLVEMTRKRDRENLSRYLCDPCPYC 408

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV---DFIDMEEKKNNRSVEKKLKESL 447
                  ++   + EA  EI R  R      + ++   D     +++   +VE   +E  
Sbjct: 409 DGTGQIKSSSTVSYEAFREIRRSCRQNTKGSITLILNSDVHRYIQQEEQEAVELLEEEMG 468

Query: 448 KK 449
           + 
Sbjct: 469 RT 470


>gi|261415726|ref|YP_003249409.1| ribonuclease, Rne/Rng family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372182|gb|ACX74927.1| ribonuclease, Rne/Rng family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325611|gb|ADL24812.1| ribonuclease, Rne/Rng family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 511

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 130/484 (26%), Positives = 238/484 (49%), Gaps = 2/484 (0%)

Query: 80  QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
           + P+  R A++++  +A+   E V+ +   G++       +      A      E+   +
Sbjct: 13  KTPYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAAFIDIGLEKAGFL 72

Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
              + +  N    +    +D      ++  I E+++  Q ++VQ+VKE    KGA +TT+
Sbjct: 73  HQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKEPISTKGARLTTH 132

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
           LS AGR+ V MP  +    +S++  +PV R+  K++ R L+    +G I+RT G + ++ 
Sbjct: 133 LSFAGRFLVCMPG-ANFVGVSKRERDPVKRREFKKVVRRLKGR-DVGYIVRTNGLNESEF 190

Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           EI +    L   W+  +           +YEE + I++ +R+ +  +   + +     Y 
Sbjct: 191 EINKQMRELESKWEQTKYNFETMPPETCIYEESDSIEQTVREYFGDNTDYVYIDNRDEYF 250

Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
             +D++K+L P     V+ +     +F    IE       Q +V LP  G ++I QTEAL
Sbjct: 251 ALRDYLKVLSPDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGGNLVIEQTEAL 310

Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           VSIDVN+G            L+TNL+A  EIA+QLRLRD+ GLI++DFIDME  ++  +V
Sbjct: 311 VSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFIDMETDEDREAV 370

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            ++ ++++++D+A +    IS FGL+E++R+R+R +++   T+ C  C G+G I +  S 
Sbjct: 371 YQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTECCPVCNGSGRIATLEST 430

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              I R +     +     + +   + V+  L           E +  + I++V      
Sbjct: 431 LGMIDRWLARAHTKGRLREVTLVVSAPVIDVLCKDLNRMFNYLEYKHNIKISLVEDEYAH 490

Query: 560 DKLF 563
              F
Sbjct: 491 INQF 494



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 1   MANK----MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56
           MANK    +LI  +   E R+ ++ D  + EL  E     ++ GNIY   V +V P+L+A
Sbjct: 1   MANKCKRGILISKT-PYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKA 59

Query: 57  AFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
           AF+D G  + GFL          Q    DR  LL+       D    + +++  ++    
Sbjct: 60  AFIDIGLEKAGFLH---------QEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEG 110

Query: 117 DH 118
             
Sbjct: 111 QE 112


>gi|189466528|ref|ZP_03015313.1| hypothetical protein BACINT_02903 [Bacteroides intestinalis DSM
           17393]
 gi|224540250|ref|ZP_03680789.1| hypothetical protein BACCELL_05163 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|189434792|gb|EDV03777.1| hypothetical protein BACINT_02903 [Bacteroides intestinalis DSM
           17393]
 gi|224518129|gb|EEF87234.1| hypothetical protein BACCELL_05163 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 524

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 222/434 (51%), Gaps = 4/434 (0%)

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
           S+ + +   +   +    ++   +   +K  Q ++VQIVKE    KG  +T+ +S AGRY
Sbjct: 89  SDKKKLPQITKATILPDLEKDGTVANTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRY 148

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            VL+P   K     +  ++    +   +       P   GVI+RT    +   E+  + +
Sbjct: 149 LVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELK 206

Query: 267 YLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
            L++ W++       +   P L+YEE +     +RDL+      I V+ E  + E KD++
Sbjct: 207 VLLKHWEDAVTKIQKATKFPTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVFHEIKDYV 266

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
            L+ P  A IV+ Y+   PI+   GI  Q+ S     V+  S  Y+II  TEAL  +DVN
Sbjct: 267 TLIAPDRAGIVKLYKGQLPIYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVN 326

Query: 386 SGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           SG  T+    ++  AL+ NL AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++ 
Sbjct: 327 SGNRTKNANGQEANALEVNLGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMC 386

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
            +++KDRAR  +  +S FGL++++RQR+R ++  +TT++C  C G G I+S      ++ 
Sbjct: 387 ANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLE 446

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
             ++  + +       +H H  +  Y+     +   +++ ++G  I ++   +LA   + 
Sbjct: 447 SKIDYLVNKLKIKKFSLHIHPYIAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLEYV 506

Query: 565 IEKGSPVQALVNTG 578
                  +  +   
Sbjct: 507 FYDPQGEEIDMKEE 520



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D    +E  + +L D  + EL  E  +     GN+YL ++ ++ P L A FVD
Sbjct: 1   MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNLSFSVGNMYLGRIKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNI 95
            G  +  FL +L++ P       Y +   SD++ L + +  
Sbjct: 60  VGYEKDAFLHYLDLGPQFNSLEKYVKQTLSDKKKLPQITKA 100


>gi|269792810|ref|YP_003317714.1| ribonuclease, Rne/Rng family [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100445|gb|ACZ19432.1| ribonuclease, Rne/Rng family [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 496

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 209/394 (53%), Gaps = 7/394 (1%)

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
               + +LVQ+ K  R  KGA VT  LSL GRY VL+P   K   +S++I +  + +   
Sbjct: 81  PHPGEEILVQVAKTARKGKGARVTPKLSLPGRYLVLVP-EGKDVGVSKRIEDEEE-RQRL 138

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           ++      P G G+I+RT        ++K D E LM LWD++   A  S AP L+Y +  
Sbjct: 139 KVLGREVRPQGFGIIVRTVAQGCHMDQLKSDVEDLMDLWDSICAAASRSPAPCLLYRDRG 198

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGIE 352
           L+ R +RD     ++E++V   +     ++ + +         V  Y    P+F   G+E
Sbjct: 199 LLDRVLRDELDHQVAEVVVDNPEELDLVREMVGRFFSQGKGPEVTLYRGRTPVFEVYGVE 258

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
            +++   + +V LPS  Y++I+Q EAL  IDVN+G+ T    ++ T L+TNLEAAEEIAR
Sbjct: 259 REMELALERKVWLPSGAYLVIDQAEALTVIDVNTGKFTGSKDLKSTILKTNLEAAEEIAR 318

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           QLRLR + G++VVDFIDM+++ + + + +  +E LK DR R +V  +++ GL+E++R+R 
Sbjct: 319 QLRLRAIGGIVVVDFIDMDDESHRQILLETTRELLKGDRQRAKVFGVTSLGLVELTRRRT 378

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           R  +    T+ C  C G+G +  + + A+ + R+V +         ++V  +  +  +  
Sbjct: 379 RGDLKSVMTRGCPMCGGSGLVEREDACAMRLKRAVRKMTGDSPPEALLVAANPQLARHC- 437

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
                 ++ +E  F   I +     L    F +E
Sbjct: 438 ---AEYLLAWEEEFRCRILLREDQSLQWGRFKVE 468



 Score = 99.7 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 3  NKMLIDASHVEETRVVVLR-DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
            ++ +    EE+RV VL    R+ ++  E   ++Q  G IY A+V  V P + AAFV+ 
Sbjct: 5  KTIVANTLESEESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNL 64

Query: 62 GGNRHGFLPFLEIH 75
          G  R+GFL   ++ 
Sbjct: 65 GDGRNGFLYLEDLG 78


>gi|302346649|ref|YP_003814947.1| S1 RNA binding domain protein [Prevotella melaninogenica ATCC
           25845]
 gi|302151051|gb|ADK97312.1| S1 RNA binding domain protein [Prevotella melaninogenica ATCC
           25845]
          Length = 523

 Score =  236 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 130/497 (26%), Positives = 229/497 (46%), Gaps = 16/497 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128
           P     ALL++  + +   E      + G++ +               D   E  A +  
Sbjct: 11  PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
               ++  S       V S+ + +            ++   +Q  ++  Q ++VQIVKE 
Sbjct: 71  LDLGSQFNSYAKYLKQVQSDRKKLYPIQKATRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
              KG  +T  +S AGR+ VL+P   K    S+  +     +   +       P   GVI
Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIKSGEERAR--LKQLIQSITPKNFGVI 188

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307
           +RT    +   E+  + + L+  W+        +   P LV+EE       +RDL+    
Sbjct: 189 VRTVAEGKRVAELDAEMKVLLSRWNEAITRLQKTQERPQLVFEETGRAVAMLRDLFNPTY 248

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             I V+ ++     + ++ L+ P  A IV++Y    PIF    +  Q+ S     +    
Sbjct: 249 ENIYVNDDEICTAVRHYVSLIAPEKAGIVKKYTGKVPIFDNFDVTKQIKSSFGKTINYGH 308

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
             Y+II  TEA+  +DVNSG  T+E   E  AL TNL AA+E+ARQLRLRD+ G+IVVDF
Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R  +     + C  C
Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDENCPTC 428

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G+G IRS       + R ++  + +       +H H  V  Y+     +   +++ ++G
Sbjct: 429 FGSGKIRSSILFTDQLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGLISLKRKWQMKYG 488

Query: 548 VSINVVIGIELADKLFY 564
             +N++   +LA   + 
Sbjct: 489 WGVNIIPSQKLAYLQYE 505



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D R+ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97
            G  R  FL +L++         Y +   SDR+ L       +
Sbjct: 60  VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPIQKATR 102


>gi|323703603|ref|ZP_08115247.1| ribonuclease, Rne/Rng family [Desulfotomaculum nigrificans DSM 574]
 gi|323531436|gb|EGB21331.1| ribonuclease, Rne/Rng family [Desulfotomaculum nigrificans DSM 574]
          Length = 559

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 148/513 (28%), Positives = 250/513 (48%), Gaps = 11/513 (2%)

Query: 89  LLKESNIAQTDSEAVA--DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           L +    A+ +   VA  +D    +V I    +   V  I     E     + +A  D+ 
Sbjct: 2   LKEIVINARDEETRVAVLEDKIPVEVYIERSPNQRLVGNIFKGRVENVLPGMQAAFVDIG 61

Query: 147 SN------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
                   VED +     +  +       I +++K  Q ++VQIVKE  G KG  VTT++
Sbjct: 62  LEKNAFLYVEDAQPSRNPEAGQSSTLNINIGDILKQGQEIIVQIVKEPIGTKGPRVTTHI 121

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           +L GRY VLMP         R  +     +   +   G   P GMGVI+RT      + E
Sbjct: 122 TLPGRYLVLMPTVDYVGISRRIESEKERER--LKELAGRVKPEGMGVIVRTVAEGVCEEE 179

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
             +D   L +LW  ++  A N  AP+L++ +  L++R +RD++ +D+  + +     Y +
Sbjct: 180 FNQDIVLLTKLWRKIQSRAANCSAPNLLHRDLELVQRMLRDVFSEDVDRLTLDSRSEYEK 239

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
             + + ++ P   ++    ++   IF   GI V+L+   +  V L    Y++I+Q EAL 
Sbjct: 240 VLEILDIIDPKL-KLKVFLDERENIFEDYGISVELERALKRRVWLKCGAYLVIDQAEALT 298

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +IDVN+G+      +EDT L+TNLEAA EIARQLRLR+L G+I++DFIDM E+ +   V 
Sbjct: 299 AIDVNTGKFVGSTNLEDTVLRTNLEAAVEIARQLRLRNLGGIIIIDFIDMVEEAHRNQVL 358

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
             L+E +KKD+ +  +  I+  GL+EM+R+++R S+ E   K C YC+G G + S+ +V+
Sbjct: 359 ATLEEEIKKDKTKTNILGITQLGLVEMTRKKVRPSLAEVVQKPCPYCEGRGKVLSEETVS 418

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
           + I   + +   Q  A  I+V  +  V   L+      + E E + G ++ +        
Sbjct: 419 IHIKTQIYQLARQTMADTILVEANPMVAARLIGAGGVNLRELEQKTGKNLYIRGNATHHL 478

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           +   I+  S    +++    V          + 
Sbjct: 479 EQVTIKPLSGQDEVISQTLPVKPGEIIEVKVEE 511



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I+A   EETRV VL D    E+  E    +++ GNI+  +V  V P +QAAFVD
Sbjct: 1  MLKEIVINARD-EETRVAVLEDKIPVEVYIERSPNQRLVGNIFKGRVENVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  ++ FL   +  P
Sbjct: 60 IGLEKNAFLYVEDAQP 75


>gi|146299292|ref|YP_001193883.1| ribonuclease [Flavobacterium johnsoniae UW101]
 gi|146153710|gb|ABQ04564.1| ribonuclease, Rne/Rng family [Flavobacterium johnsoniae UW101]
          Length = 543

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/563 (22%), Positives = 229/563 (40%), Gaps = 64/563 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           NK LI  S  E     +L+D ++ EL  E E      G+I++AK+ +    L AAFV+ G
Sbjct: 31  NKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNVG 90

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             +  FL + ++ P+      + +   +K               V+ G +   +  + + 
Sbjct: 91  FEKDAFLHYHDLGPN-----LASQLKFIKL--------------VSAGKLKDFSLKTFQF 131

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
              I      T+  S   +    V        G           ++ +     +R  +  
Sbjct: 132 EKEIDKDGIITDILSANQSVLVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRVSISQ 191

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           +I  ++  ++   +   +   G              I R +    +   L++  + L   
Sbjct: 192 KIEDKKEKDRLKKLVLSIKPKGF-----------GVIVRTVAEGKNVAELEKDLQNLLGR 240

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
                                           + +    +  P  V  E N     +RD+
Sbjct: 241 WS-----------------------------AMCKKLPTAHHPSKVLGELNRASSILRDV 271

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQT 361
           +    S I +  E+ Y + K++++ + PS   IV+    +  PIF +  IE Q+ +    
Sbjct: 272 FNDTFSGIQIDDEELYHQTKEYLQEIAPSKQSIVKFYQSNDTPIFEKYNIERQIKTSFGR 331

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
            V++    Y+II  TEAL  IDVNSG RS +    EDTA++ N+ AA EIARQLRLRD+ 
Sbjct: 332 TVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLRLRDMG 391

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDM   +N + +   L+E +  D+A+ ++   S FGL++++RQR+R  V   T
Sbjct: 392 GIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPEVNIKT 451

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            +     K  G I +   +   I   +E  L  +    ++++TH  V  YL     +   
Sbjct: 452 REEDPN-KVNGEIEAPILIIDKITSDLERLLKTHN--KVVLNTHPFVAAYLSKGFPSLRS 508

Query: 541 EYEARFGVSINVVIGIELADKLF 563
           ++       + ++         +
Sbjct: 509 KWFFEHKKWVKIIPRDAYTYLEY 531


>gi|332885921|gb|EGK06165.1| hypothetical protein HMPREF9456_00039 [Dysgonomonas mossii DSM
           22836]
          Length = 524

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 130/500 (26%), Positives = 229/500 (45%), Gaps = 11/500 (2%)

Query: 73  EIHPDYYQIPFSDRQALLKESNIAQTDSEA-------VADDVTHGDVTIPNDHSLEEVAP 125
           ++ P+   I   + + L++     +  S A           +  G      D   ++ A 
Sbjct: 8   DVQPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVDIGYKKDAF 67

Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185
           +       + +S+       +++ +     S   +     +   I +V+K  Q +LVQI 
Sbjct: 68  LHYLDLGAQFKSVDKFYKQALADKKKFPNISKMKMEADIDKNGSISDVLKPGQEILVQIA 127

Query: 186 KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245
           KE    KG  +T  LSLAGR+ V++P   K     +  +     +           P   
Sbjct: 128 KEPISTKGPRLTAELSLAGRFLVVIPFNDKVSVSQKIKSKEERAR--LRQLIQSIKPKNF 185

Query: 246 GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK 305
           GVI+RT    +   ++  + + L++ W++       +  P LV+EE   I   +RD++  
Sbjct: 186 GVIVRTVAEGKKVADLDTELKTLVKRWEDNLPKIQKNKLPTLVFEETGRIVALLRDIFNP 245

Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365
              EI V+      + KD++  + P    IV+ Y+   PIF    +  Q+ +L    VT 
Sbjct: 246 TFQEIHVNDLDTCNQIKDYISFIAPDKKNIVKSYDGGLPIFDNFNVTKQVKALFGKTVTF 305

Query: 366 PSRGYVIINQTEALVSIDVNSG--RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            +  Y+I+  TEAL  +DVNSG      E   E+ A + N  AAEEIARQLRLRD+ G+I
Sbjct: 306 RNGAYLILEHTEALHVVDVNSGNRSKNPEAGQENNAWEVNSAAAEEIARQLRLRDMGGII 365

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           V+DFIDM E ++   +  K++E +  DRA+  +  +S FGL++++RQR+R  +  STT+ 
Sbjct: 366 VIDFIDMTEGEHKAQLMAKMQELMANDRAKHNILPLSKFGLMQITRQRVRPEMEISTTEA 425

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G IR       ++   +   +      N  ++ H  V  ++     +   +++
Sbjct: 426 CPTCFGKGEIRPSILFTDTLRMKISYLVKDLKVKNFKLYIHPYVAAFINKGFPSLKWQWK 485

Query: 544 ARFGVSINVVIGIELADKLF 563
            R+G+ + ++    LA   +
Sbjct: 486 WRYGMGVKIIPNQNLAFLEY 505



 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D     E  + VL D ++ EL  E        GNIY  KV ++ P L AAFVD
Sbjct: 1   MNSELIVDV-QPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119
            G  +  FL +L++   +  +    +QAL  +          +  D+  +G ++      
Sbjct: 60  IGYKKDAFLHYLDLGAQFKSVDKFYKQALADKKKFPNISKMKMEADIDKNGSISDVLKPG 119

Query: 120 LEEVAPIANFSQETEEESIISA 141
            E +  IA     T+   + + 
Sbjct: 120 QEILVQIAKEPISTKGPRLTAE 141


>gi|154508999|ref|ZP_02044641.1| hypothetical protein ACTODO_01516 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798633|gb|EDN81053.1| hypothetical protein ACTODO_01516 [Actinomyces odontolyticus ATCC
           17982]
          Length = 936

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 152/597 (25%), Positives = 257/597 (43%), Gaps = 45/597 (7%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 289 GEVNWDAVGMEGKPRRIEAALKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPGG 348

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       VP+G GVI+RTA    T+ +I+ D   L R W+
Sbjct: 349 SMMG-ISRKLPDKERARLKK--ILKAVVPSGSGVIVRTAAEGATEEQIRDDVARLTRQWE 405

Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           ++ +   N+ + P L+  E  L  R +RD++ +D S++++ G   Y   K+++  L P  
Sbjct: 406 DIEKKRTNTKSAPTLLRGEPELAVRVVRDIFNEDFSKLVIEGRDTYATVKEYVDELSPEL 465

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
           +  V Q+     +F    I+ QL      +V LPS G +II++TEA+  IDVN+G+    
Sbjct: 466 SDRVEQWVGTEDVFRAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKFIGA 525

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++++DF+DM  + N   V ++L E L +DR
Sbjct: 526 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 585

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL------- 504
            R QV  I++ GL++M+R+R+   ++E+ +  C  C+G G+I  Q  V  S         
Sbjct: 586 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSSSCEACEGRGFIVHQHPVETSGAEQPSKGS 645

Query: 505 ------------RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
                       R +E+      A   +    +           A     + R   +++ 
Sbjct: 646 KGSKKQQKKAEPRRIEDNADHERAKEALSAIAAASTRKEEESAAAEPAPTKKRRTRAVST 705

Query: 553 VI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA--------L 603
            +   E +         +P +   +      ++  A    +    V +            
Sbjct: 706 EVKEPEASSLEQVAAPEAPAEESASKPAAEKAEESATKRPRRRRRVAESAPLPELPVRID 765

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
           LP P   S E       + E      + +    RRR +     A       +        
Sbjct: 766 LPEPVDHSDEPAAPTKDASEIQLPEHREKAPATRRRASRKAATASSEEPAEAP------- 818

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                 P         +        +   +  PVS    E ++       +KTR  +
Sbjct: 819 -----APKKTRRRVTAQTAVPEVQTDETPATAPVSASVAEETSFQEAAAPRKTRRRR 870



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ +L D  + E       +  + GNIYL +V  V PS++AAFVD G  R+  L   E++
Sbjct: 233 QIAILEDGLLVEHYVARRTQSSMVGNIYLGRVQNVLPSMEAAFVDVGRGRNAVLYAGEVN 292

Query: 76  PD 77
            D
Sbjct: 293 WD 294


>gi|312135810|ref|YP_004003148.1| ribonuclease, rne/rng family [Caldicellulosiruptor owensensis OL]
 gi|311775861|gb|ADQ05348.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor owensensis OL]
          Length = 571

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 143/476 (30%), Positives = 231/476 (48%), Gaps = 12/476 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162
           +D    ++ I  + S   V  I     E     + +A  N     N     G        
Sbjct: 20  EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGREKNAFLYLGDVNRLEFG 79

Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+PNT      
Sbjct: 80  DTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVTTNITLPGRYLVLLPNTEYVGVS 139

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            R  +     +   +       P GMG+I+RTA   +++  +K + E+L  +W  +R+ +
Sbjct: 140 KRIESEEERLR--LKEIACRLKPEGMGLIVRTAAEGKSEEILKSELEFLKNMWKKIRQKS 197

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             S AP L+Y++ +L+ +A+RD++   +   +++  K Y +  +F+    PS    V  +
Sbjct: 198 CQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKVEYF 256

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
                IF    IE +L       V L S GY++I++TEAL  IDVN+G+   +  + +T 
Sbjct: 257 NLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVAETI 316

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+  ++ + V   LKE+LK+D+ +  V  I
Sbjct: 317 LKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVVVDI 376

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           +  GL+EM+R+++R  +       C YC+G G I S  SVA  +L+ +E Y         
Sbjct: 377 TPLGLVEMTRKKVRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVEDKF 436

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGV--SINVVIGIELADKLFYIEKGSPVQA 573
            V  ++ V   L   +   I E E ++     I V     +    F I        
Sbjct: 437 FVEMNTKVCEILRKGEIDRIKELEQKY--KKKIYVKASSNIHINKFTICPVKDEDH 490



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   +TRV VL D  + E+  E E  + I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G  ++ FL   +++        +YY+I
Sbjct: 60 IGREKNAFLYLGDVNRLEFGDTDEYYEI 87


>gi|303237107|ref|ZP_07323677.1| S1 RNA binding domain protein [Prevotella disiens FB035-09AN]
 gi|302482494|gb|EFL45519.1| S1 RNA binding domain protein [Prevotella disiens FB035-09AN]
          Length = 523

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 133/497 (26%), Positives = 230/497 (46%), Gaps = 16/497 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128
           P     ALL++  + +   E    + + G++ I               D   E  A +  
Sbjct: 11  PKEISIALLEDKRLVEYQREPRDANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFLHY 70

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
               ++  S       V S+ + +            ++   IQ +++  Q ++VQ+VKE 
Sbjct: 71  LDLGSQFNSFAKYLKQVQSDRKRLFPLQKASKLPILQKDSSIQNILEVGQEVMVQVVKEP 130

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
              KG  +T  +S AGRY VL+P   K    ++  +     +   +       P   GVI
Sbjct: 131 ISTKGPRLTGEISFAGRYLVLIPFGDKVNVSTKIKSGEERAR--LKQLIQSIRPKNFGVI 188

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307
           +RT    +   E+  + + L   W+        +   P L++EE       +RDL+    
Sbjct: 189 VRTVAEGKRVAELDAEMKVLFNRWNEAITKVQKTQERPQLIFEETGRAVGMLRDLFNPTY 248

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             I V+ E+     K ++ L+ P  A IV++Y    PIF    +  Q+ S     +    
Sbjct: 249 ENIYVNDEEICTAVKSYVSLIAPEKADIVKKYNGKLPIFDNFDVTKQIKSSFGKTINYGH 308

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
             Y+I+  TEA+  +DVNSG  T+E   E  AL TNL AA+EIARQLRLRD+ G+IVVDF
Sbjct: 309 GCYIIVEHTEAMHVVDVNSGNRTKEKGQEQNALDTNLGAADEIARQLRLRDMGGIIVVDF 368

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R  +     + C  C
Sbjct: 369 IDMNLAEDRQMLYERMCKAMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVAEECPTC 428

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G+G IRS       + R +++   +   +   +H H  V  Y+     +   +++ ++G
Sbjct: 429 FGSGKIRSSLLFTDLLERKIDQLTNKIGINKFYLHVHPYVAAYINEGFISLKRKWQMKYG 488

Query: 548 VSINVVIGIELADKLFY 564
             + VV   +LA   + 
Sbjct: 489 FGVKVVPSQKLAFMQYE 505



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D R+ E   E        GNIY+AKV ++ P L A FVD
Sbjct: 1   MTSEIIIDA-QPKEISIALLEDKRLVEYQREPRDANFSVGNIYIAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97
            G  R  FL +L++         Y +   SDR+ L      ++
Sbjct: 60  VGYERDAFLHYLDLGSQFNSFAKYLKQVQSDRKRLFPLQKASK 102


>gi|146296322|ref|YP_001180093.1| ribonuclease [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409898|gb|ABP66902.1| RNAse G [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 571

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 138/507 (27%), Positives = 240/507 (47%), Gaps = 14/507 (2%)

Query: 98  TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGG 155
               AV +D    ++ I  +     V  I     E     + +A  N     N     G 
Sbjct: 13  ETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNIGQDKNAFLYLGD 72

Query: 156 SPEDVPKKFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                       Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+PN
Sbjct: 73  INRLEFGDTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVTTNITLPGRYLVLLPN 132

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLM 269
           T       R        +      + +     P GMG+I+RTA   +++  ++ + E+L 
Sbjct: 133 TDYIGISKRIEFEEERTR-----LKEIACKIKPDGMGLIVRTAAEGKSEEVLRNELEFLR 187

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            LW  +R+ +  S AP L+Y++ +L+ +A+RD++   +   +++  K Y +  +F+    
Sbjct: 188 NLWQKIRQKSKES-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSTYA 246

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           PS    V  +     IF    IE +L       + L S GY++I++TEAL  IDVN+G+ 
Sbjct: 247 PSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEALTVIDVNTGKF 306

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             ++ + +T L+TNLEAA EIARQ+RLRD+ G+I++DFIDM+  ++ + V   LKE+LK+
Sbjct: 307 VGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLVLDALKEALKR 366

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           D+ +  V  I+  GL+EM+R+++R  +       C YC+G+G I S  +V L +L+ +E 
Sbjct: 367 DKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETVGLKVLKEIEW 426

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
           Y          V  ++ V   L   +   I E + ++   + +     +    F I    
Sbjct: 427 YFKNRVEEKFFVEINTKVCEVLRKGEVDRIKELQEKYKKKVYLKASSNIHINKFTICPVK 486

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIEC 596
                +     +    +  ++ +  + 
Sbjct: 487 DEDHYMALCGALSEGDEVLAFVEEEDK 513



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   ETRV VL D  + E+  E   ++ I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSFG-ETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G +++ FL   +I+        +YY+I
Sbjct: 60 IGQDKNAFLYLGDINRLEFGDTDEYYEI 87


>gi|189485543|ref|YP_001956484.1| ribonuclease G [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287502|dbj|BAG14023.1| ribonuclease G [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 488

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 255/479 (53%), Gaps = 6/479 (1%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           +  +K+  I     E     +              E   I N   +   ++I+ A N + 
Sbjct: 11  EKTVKKEIIVNRTFEESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLF 70

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
            ++   +G   + V    K     + +IK  Q ++VQ+ KE   NKGA VT  +SL GR 
Sbjct: 71  VDIGFGRGAYLD-VCDILKEHRSKKNMIKAGQDIMVQVYKEPIHNKGAKVTMAISLTGRL 129

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            V MP  S    +S+ I +  +   LK +   L+     G+I+RT     TK EIK + +
Sbjct: 130 LVYMPF-SNNIGVSKNIKDKHEYNRLKSMTAELKKDISGGIIIRTKAEKATKAEIKNEIK 188

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
           YL+RLW ++ E   ++    L++++  L+ + + D +  D+  + +  +K  ++  DF++
Sbjct: 189 YLIRLWASITERFDDAKPMSLIHKDLGLVFQTVIDYFSDDVIFMRIDSQKELKDVTDFVE 248

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
           +++P +   +  Y+D  PIF + GIE ++  L   +V L S GY+II + E+L +IDVNS
Sbjct: 249 IVLPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQEAESLCAIDVNS 308

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           G+ T +   EDTA+ TNLEAAEEIARQLRLR++ G+IV+DFIDM++  N R V + L+++
Sbjct: 309 GKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASNRRKVLETLRKA 368

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
            K D+A++++  I+  GL+EM+R+R R S+      +C  C G  ++ S+ S+ +++   
Sbjct: 369 TKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLSKESIFINVCDE 428

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +++  +      I +  + DV+ Y + +K       E  FGV  ++    EL  + + I
Sbjct: 429 IKQLKIDGYDGRIKIKLNIDVIEYFMKKK----ARLEELFGVEFDIEASTELLREEYKI 483



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +++++ +  EE+RV +L + ++  L  E    ++I  NIY  +V  + P+L + FVD G
Sbjct: 16 KEIIVNRTF-EESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDIG 74

Query: 63 GNRHGFLPFLEI 74
            R  +L   +I
Sbjct: 75 FGRGAYLDVCDI 86


>gi|307566014|ref|ZP_07628472.1| S1 RNA binding domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345202|gb|EFN90581.1| S1 RNA binding domain protein [Prevotella amnii CRIS 21A-A]
          Length = 523

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 118/423 (27%), Positives = 211/423 (49%), Gaps = 3/423 (0%)

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
             V S+ + +       +    ++   ++ V++  Q +LVQ+VKE    KG  +T  +S 
Sbjct: 85  KQVQSDRKRLYPIQKAIILPDIEKDGTVKGVVQVGQEVLVQVVKEPISTKGPRLTGEISF 144

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
           AGRY VL+P  +K    S+  +     +   +       P    VI+RT    +   E+ 
Sbjct: 145 AGRYIVLLPFGNKISVSSKIKSGEERAR--LKQLIRSITPKNFSVIVRTVAEGKRVAELD 202

Query: 263 RDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            + + L++ W++V      +   P LVYEE       IRDL+      I V+ +      
Sbjct: 203 AEMQILLKRWNDVITKVQKTQERPQLVYEETGRAVAMIRDLFNPTYENIYVNDKDICTAV 262

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           + ++ ++ P  A IV+QY    PIF    I  Q+ S     +      Y+II  TEA+  
Sbjct: 263 RHYVSMIAPEKASIVKQYTGKLPIFDNFDITRQIKSSFGKTINYGHGCYIIIEHTEAMHV 322

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSG   +E   E  AL  NL AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +
Sbjct: 323 VDVNSGNRAKEKGQEQNALDANLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQMLYE 382

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++ +++++DRAR  +  +S FGL++++RQR+R ++     + C  C G G +R+      
Sbjct: 383 RMSKNMQQDRARHNILPLSKFGLMQITRQRVRPAMDVDVDETCPTCFGTGKVRASILFTD 442

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            +   ++  + ++      +H H  V  Y+     +   +++ ++G+ ++V+   +LA  
Sbjct: 443 QLEHKIDRLVNKFGVKKFYLHVHPYVAAYINKGFISLKRKWQLKYGIGVHVIPSQKLAYL 502

Query: 562 LFY 564
            + 
Sbjct: 503 QYE 505



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D R+ E   E        GNIY+AKV ++ P L A FV+
Sbjct: 1   MTSEIIIDV-QEKEISIALLEDKRLVEYQREPREANFSVGNIYMAKVKKLMPGLNACFVN 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104
            G  R  FL +L++         Y +   SDR+ L               
Sbjct: 60  VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKRLYPIQKAIILPDIEKD 109


>gi|295136314|ref|YP_003586990.1| ribonuclease G [Zunongwangia profunda SM-A87]
 gi|294984329|gb|ADF54794.1| ribonuclease G [Zunongwangia profunda SM-A87]
          Length = 512

 Score =  234 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 126/564 (22%), Positives = 231/564 (40%), Gaps = 64/564 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S        +L+D ++ EL+ + +      G+I +AK+ +  P L AAFV+
Sbjct: 1   MDKELII-RSESSAVDFALLKDGKLIELNKDEDDNNFNVGDIMIAKIRKAVPGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  + GFL + ++ P       S     +K  +  +    ++ +     D+      + 
Sbjct: 60  VGYTKDGFLHYHDLGPQ-----VSSLLKFIKRVSTGKLKDYSLKNFTFEKDIDKNGSITD 114

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
              +  +   Q  +E                               +Y +     NR  +
Sbjct: 115 VLKSNQSLLVQIVKEPISTKGPRISSE--------------LSLPGRYIVLVPFSNRISV 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +E  ++   +   +   G   ++                               
Sbjct: 161 SQKIESKEEKDRLKRLVKSIKPKGFGVIVRT----------------------------- 191

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                          +   E+ +D + LM  W  + +       P  V  E +     +R
Sbjct: 192 -----------VAEGKKVAELDKDLQNLMGRWTAMCKKLYKPHYPSKVLGELHRASSLLR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I V  E  Y + KD++  + PS   IV+ ++   PIF + GIE Q+ +   
Sbjct: 241 DVFNDTFTSITVDDETLYTQIKDYVSEIAPSKESIVKLHQSNVPIFEKFGIERQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEA+  IDVNSG RS +    EDTAL+ NL +A EIARQLRLRD+
Sbjct: 301 RTVSMSKGAYLVIEHTEAMHVIDVNSGNRSNKSKNQEDTALEVNLISATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM + +N +++   LK+ +  DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMGKAENRKTLFDHLKQEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +      G G I +   +   I ++  E L++     I + TH  +  +L     +  
Sbjct: 421 TREENP--NGDGEIEAPIILIQKI-KADLERLIKKNHKKITLSTHPFISAFLTKGFPSPR 477

Query: 540 VEYEARFGVSINVVIGIELADKLF 563
            ++       + ++         +
Sbjct: 478 SQWFFDHKRWVKIIPRDAYTYLEY 501


>gi|290960391|ref|YP_003491573.1| hypothetical protein SCAB_60141 [Streptomyces scabiei 87.22]
 gi|260649917|emb|CBG73033.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1369

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 152/613 (24%), Positives = 263/613 (42%), Gaps = 17/613 (2%)

Query: 105  DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
            +D    +  +  + S   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 633  EDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 692

Query: 163  KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                   I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 693  MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 751

Query: 223  ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ + N 
Sbjct: 752  LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKNG 809

Query: 283  VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
             AP L+Y E ++  R +RD++ +D S++IVSGE+ +     ++  + P  A  ++++   
Sbjct: 810  NAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGEEAWETIHGYVSHVAPDLAERLQKWTSE 869

Query: 343  HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
              +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 870  VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 929

Query: 402  TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
             NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 930  NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 989

Query: 462  FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
             GL++M+R+R+   +LES ++ C +C G G I                   +  A +   
Sbjct: 990  LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMDQPTAVGGGGKRRKRGRGGAEHEHD 1049

Query: 522  HTHSDVVLYLLNQKRATIVEYE---ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
            H H          + A  VE     A   V+  V   + L    F  ++           
Sbjct: 1050 HEHVS------GHETAEPVETTTEQAEAEVAAEVAEPVALPAPEFEPDEELYSSVAEAEA 1103

Query: 579  HKVGSDSQAPSYDKNIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                  S+  +  +           A +    SE            E   V         
Sbjct: 1104 AVGRGRSRRRATRRASAPSGAPKSRATVTGTVSEDRAPKPREAAEAEPVAVEDPVVETPV 1163

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
               PA +  +       +  +     S              ++        E    +  P
Sbjct: 1164 VEAPAAESTEDAAPKGRTRRRATRKVSAPAGTPAGAAVEDTVVTVSEPVVHEATATATEP 1223

Query: 697  VSTPEMESSNSSS 709
                E     +++
Sbjct: 1224 AVADEAPQPEAAA 1236



 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 615 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIG 674

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 675 KGRNAVLYAGEV 686


>gi|111221361|ref|YP_712155.1| ribonuclease E-like protein [Frankia alni ACN14a]
 gi|111148893|emb|CAJ60572.1| Ribonuclease E homolog [Frankia alni ACN14a]
          Length = 1373

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 4/343 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++V+K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 827  GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPD- 885

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+ +    + LK I + +    G GVI+RTA    ++ E++RD E L   W+
Sbjct: 886  GQNAGISRKLPDTERAR-LKSILKKITPEDG-GVIVRTAAEGASEAELERDIERLAAQWE 943

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +++  A  + AP L+Y E +L+ R IRD++ +D +E++V G       ++++  + P   
Sbjct: 944  DIQRRAKKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSGEAATIEEYIDAVAPDLR 1003

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              +R+Y     +F    ++ QL      +V LPS G ++I++TEA+  IDVN+G+ T + 
Sbjct: 1004 PRIRRYTGSGDVFVDYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 1063

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 1064 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 1123

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
            R QV  +++ GL++M+R+R+   +LE+ ++ C +C G G +  
Sbjct: 1124 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCVHCNGRGVLIH 1166



 Score = 95.4 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             +M I     + T++ VL D+ + E            GN+YL +V  V  S++AAFVD 
Sbjct: 758 ERRM-IVRHAGDRTQIAVLEDSVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDI 816

Query: 62  GGNRHGFLPFLEIHPD 77
           G  R+  L   E++ D
Sbjct: 817 GKGRNAVLYAGEVNYD 832


>gi|288574646|ref|ZP_06393003.1| ribonuclease, Rne/Rng family [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570387|gb|EFC91944.1| ribonuclease, Rne/Rng family [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 500

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 128/494 (25%), Positives = 239/494 (48%), Gaps = 4/494 (0%)

Query: 92  ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151
               ++    A   D     V I     L E+     + ++   E   +    V+  +  
Sbjct: 2   ADRDSEIRIIANTVDPEEMRVAIIEGDRLRELFIERMWERQKSGEIYKARVESVLPGMNA 61

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                 +               +K    ++VQ+VK  R NKGA VTT LSL GR+ V++P
Sbjct: 62  SFVNLGDGRNAFLYLNDAKGYHLKPGMDVVVQVVKTARKNKGARVTTRLSLPGRFLVIVP 121

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    R + +    + L+++AR L     +G+I+RTA   +    ++ DF+ LM+L
Sbjct: 122 GGQDVGVSKRIVEDKERLR-LRDVARQLSKREDIGIIIRTAAEGQDSEILENDFDSLMQL 180

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  V   A    AP L+Y +  L  R +RD +  D+ EI++  E+   + +++++     
Sbjct: 181 WREVAHEADVQTAPCLLYRDPGLTGRVLRDEFSGDVFEIVIDNEEEKTKVEEWLRTYGGQ 240

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V  +    P+F    IE ++ +    +V L S  Y++I QTEA+  IDVN+G+   
Sbjct: 241 VMPSVSLHRSNTPVFEFYDIEKEVAAALDQKVWLRSGAYIVIEQTEAMTVIDVNTGKFVG 300

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           +  +  T LQTNLEAA+EIA QLRLR + G+++VDFIDME +++  ++ +++++ L  DR
Sbjct: 301 DTDLRHTVLQTNLEAADEIAWQLRLRAIGGIVIVDFIDMECEEDKTTLVQRMEQLLADDR 360

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            R +V  +++ GL+E++R+R R+ V    T+ C +C     +  + SVA+++ R + + +
Sbjct: 361 CRSKVFGVTHLGLVEITRKRARTDVRSILTRSCPFCGTTARVLKEDSVAVTLKRFIRKIV 420

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
               +  +++  +S +  Y+       +  +E  F  +I +     +  + F ++     
Sbjct: 421 RSNKSEAMLLECNSRIAGYIAE---TYLSVWEEAFERAIALCAVPSMDWEKFRLDYQGSR 477

Query: 572 QALVNTGHKVGSDS 585
           + L     +   ++
Sbjct: 478 EGLEKRVAQRQEEA 491



 Score = 98.9 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          +++ +    EE RV ++  +R+ EL  E   ++Q  G IY A+V  V P + A+FV+ G 
Sbjct: 9  RIIANTVDPEEMRVAIIEGDRLRELFIERMWERQKSGEIYKARVESVLPGMNASFVNLGD 68

Query: 64 NRHGFLPFLE 73
           R+ FL   +
Sbjct: 69 GRNAFLYLND 78


>gi|289641535|ref|ZP_06473697.1| ribonuclease, Rne/Rng family [Frankia symbiont of Datisca
           glomerata]
 gi|289508630|gb|EFD29567.1| ribonuclease, Rne/Rng family [Frankia symbiont of Datisca
           glomerata]
          Length = 909

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 127/348 (36%), Positives = 207/348 (59%), Gaps = 4/348 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++V+K+ Q ++VQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 394 GEVNYDASGLDGRPRKIEQVLKSGQSIVVQVSKDPIGHKGARLTSQVSLPGRYLVYVPD- 452

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISRK+ +    + LK I + +    G GVI+RTA    ++ E+ RD   L   W+
Sbjct: 453 GQNAGISRKLPDTERAR-LKAILKKITPEDG-GVIVRTAAEGASEQELARDVARLSAQWE 510

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           ++   A  + AP L+Y E +L+ R IRD++ +D +E++V G       +D++ ++ P   
Sbjct: 511 DICRKATKATAPALLYGEPDLVIRVIRDIFNEDFAELVVQGAGEATMIEDYVDMVAPDLR 570

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             VR+   P  +F    ++ QL    + +V LPS G ++I++TEA+  IDVN+G+ T + 
Sbjct: 571 DRVRRQAGPVDVFDEYRVDEQLAKALERKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 630

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 631 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 690

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           R QV  +++ GL++M+R+R+   +LE+ ++ CT+C G G I      +
Sbjct: 691 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCTHCGGRGVILHLDGAS 738



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 2   ANKMLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
             +M++ +A   + T++ VL D  + E            GN+YL +V  V  S++AAFVD
Sbjct: 325 ERRMIVRNA--GDRTQIAVLEDGVLVEHFVTRASSWSYAGNVYLGRVQNVLASMEAAFVD 382

Query: 61  YGGNRHGFLPFLEIHPD 77
            G  R+  L   E++ D
Sbjct: 383 IGKGRNAVLYAGEVNYD 399


>gi|38234353|ref|NP_940120.1| putative RNA-associated protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200616|emb|CAE50312.1| Putative RNA-associated protein [Corynebacterium diphtheriae]
          Length = 962

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 140/578 (24%), Positives = 243/578 (42%), Gaps = 45/578 (7%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G           R   I++ +K+   +LVQ+ K+  G+KGA +TT +S AGRY V +P  
Sbjct: 377 GEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPIGHKGARLTTQISFAGRYLVYVPG- 435

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISRK+  P  ++   +      VP   G I+RTA  + +   I  D   L +LWD
Sbjct: 436 GRTAGISRKLPAPERKR--LKEILKEVVPHDGGAIIRTAAENVSAEAIGADVNRLHKLWD 493

Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +++      A        +YEE N++ + +RDL+ +D + +++ G++ +     +++ +
Sbjct: 494 KIQQRTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDFTSLVIDGDRAWNTVHAYVQSV 553

Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
            P     + +++         F    +  Q+      +V LPS G ++I++TEA+  IDV
Sbjct: 554 APDLLGRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKVWLPSGGTLVIDRTEAMTVIDV 613

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 614 NTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 673

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS- 502
            E+L +DR R QV  +++ GL++M+R+R+ + +LE+    C +C+G G I     V    
Sbjct: 674 TEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFATECPHCEGRGVIIHDDPVEQRD 733

Query: 503 ----ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
               + +S      +    N     H         +K+ +I +       ++ +      
Sbjct: 734 ADVAMEKSHRARNERKKNKNHTPSEHPAAAAMHEEKKKVSIEDL----VAAVVIEDDP-- 787

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                      P   +V T           +          DE           +     
Sbjct: 788 ----------QPEPDVVPTPADDDVMDIVSAALDRAYEEDPDEPSGSDYLPLEEKPQTYA 837

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              EE     R++R+ R              VSDV   +   +           +   + 
Sbjct: 838 EAVEEFERSPRRKRKTRGN-----------SVSDVPPRKADFEKPEPQPEPEVVVEKVSS 886

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                       + +   V+  E   S+      V+K 
Sbjct: 887 RGRRRAVRRTVVEATPEVVAPTETVESSRGRRRAVRKK 924



 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query: 11  HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
           H   T+V VL D  + E    SE +  + GNIYL +V  V PS++AAF+D G  R+G L 
Sbjct: 316 HGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLY 375

Query: 71  FLEI 74
             E+
Sbjct: 376 AGEV 379


>gi|218200941|gb|EEC83368.1| hypothetical protein OsI_28778 [Oryza sativa Indica Group]
          Length = 1036

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 136/643 (21%), Positives = 257/643 (39%), Gaps = 94/643 (14%)

Query: 5    MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
            ++I++S     R+ VL D ++ EL  E       K                        +
Sbjct: 415  IVINSSVCTMQRIAVLEDGKLVELLLEPIKNNNAK-----------------------RD 451

Query: 65   RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
               F  + +           D     ++ +   TD E   ++        P +   E   
Sbjct: 452  SANFSDYND-----------DSLPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEE 500

Query: 125  -------------------------------PIANFSQETEEESIISANNDVVSNVEDVK 153
                                              +   E  E+ +    ++V ++++ + 
Sbjct: 501  HMAFLPNSKINMIHSAEFESISSYDEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLS 560

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
                                ++    ++VQ+VKE  G+KG  ++ +  L  R+ +L+ + 
Sbjct: 561  SIQHALRESSDDTNGSRWSQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILV-SR 619

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 +S+KIT     +   +    L  P G  +  RT  A  +  E+++D + L+  W 
Sbjct: 620  GNKVGVSKKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHSWEELQKDLDRLLSTWK 677

Query: 274  NVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
             + E A ++              +++         ++D + + +  ++V   + Y E  +
Sbjct: 678  GIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTN 737

Query: 324  FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
            +++ + P     V  YE   PIF    IE ++D++    V L + G ++I QTEALVSID
Sbjct: 738  YLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSID 797

Query: 384  VNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
            VN G S   +    E   L+ NLEAA++IAR+LRLRD+ G+IVVDFIDM +  N + V +
Sbjct: 798  VNGGHSMFGQGTSQEKAILEVNLEAAKQIARELRLRDIGGIIVVDFIDMTDDTNKKLVFE 857

Query: 442  KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            ++K++++KDR+ V V  +S  GL+E++R+R+R SV    ++ C  C G G + +  +   
Sbjct: 858  EMKKAVEKDRSTVGVSELSKLGLMEITRKRVRPSVTFMISEPCPCCHGIGRVEALDTSFS 917

Query: 502  SILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
             I R +   L                  ++    ++  YL + K+  +    +   V I 
Sbjct: 918  KIEREICRRLAASGHKSDPEKPKSWPRFVLRVDHEMCTYLTSGKKTKLGLLSSSLKVWIL 977

Query: 552  VVIGIELADKLFYI----EKGSPVQALVNTGHKVGSDSQAPSY 590
            + I    A   F +    ++    +    T      ++ +P  
Sbjct: 978  LKIARGFARGAFELLPYSDEKETDERKEETSESPPKEAGSPKL 1020


>gi|282877162|ref|ZP_06286000.1| S1 RNA binding domain protein [Prevotella buccalis ATCC 35310]
 gi|281300654|gb|EFA92985.1| S1 RNA binding domain protein [Prevotella buccalis ATCC 35310]
          Length = 524

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 122/402 (30%), Positives = 207/402 (51%), Gaps = 4/402 (0%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
           ++   +Q  +   Q +LVQIVKE    KG  +T  LS AGR+ VL+P   K    S+   
Sbjct: 107 QKDGSVQSTLTLGQEILVQIVKEPISTKGPRLTAELSFAGRFLVLIPFGDKVSVSSKIKN 166

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SV 283
                +   +       P   GVI+RT    +   E+  + + L + W +          
Sbjct: 167 GEERAR--LKQLVRSIKPKNCGVIVRTVAEGKRVAELDGEMKVLTKRWQDAIVKVQKTQK 224

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
            P LVYEE       +RD++      I ++ E+ +R+ KD++ L+ PS + IV++Y    
Sbjct: 225 RPQLVYEEAVRAIALLRDIFNPSFENIYINDEEAFRQVKDYVTLIAPSKSGIVKRYTGKV 284

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQT 402
           PIF    I  Q+ S     +      Y+II  TEAL  +DVNSG  TR+   ++  AL+ 
Sbjct: 285 PIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRKENDQEANALEV 344

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NL AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +++ ++++ DRAR  +  +S F
Sbjct: 345 NLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQMLYERMCKNMQSDRARHNILPLSKF 404

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
           GL++++RQR+R  +  +  + C  C G G I+S       + R +++ + +       +H
Sbjct: 405 GLMQITRQRVRPVMDVNVDETCPTCNGTGKIKSSILFTDQLERKIDKLVNKIGIKRFTLH 464

Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
            H  V  Y+     +   +++ ++G+ +NV+   +LA   + 
Sbjct: 465 VHPYVAAYINQGVFSLKRKWQMKYGLGVNVIPSQKLAFLQYE 506



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/440 (14%), Positives = 117/440 (26%), Gaps = 44/440 (10%)

Query: 1   MANKMLIDASHVEETRVV--VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
           M ++++ID    +E  +   +L D R+ E   E        GN+Y+AKV ++ P L A F
Sbjct: 1   MTSEVVIDV---QEKDIATALLEDKRLVEYQNEPRSATFSVGNVYIAKVKKLMPGLNACF 57

Query: 59  VDYGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTH--- 109
           VD G  R  FL +L++         Y +   SDR+ L   +  +          V     
Sbjct: 58  VDVGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPFAKASHLPDLQKDGSVQSTLT 117

Query: 110 -GDVTIPNDHSLEEVAPIANFSQETE------------EESIISANNDVVSNVEDVKGGS 156
            G   +               + E              ++  +S+          +K   
Sbjct: 118 LGQEILVQIVKEPISTKGPRLTAELSFAGRFLVLIPFGDKVSVSSKIKNGEERARLKQLV 177

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
               PK            K    L  ++    +  + A V    +      V      + 
Sbjct: 178 RSIKPKNCGVIVRTVAEGKRVAELDGEMKVLTKRWQDAIVKVQKTQKRPQLVYE-EAVRA 236

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR----DFEYLMRLW 272
             + R I NP                     ++  + +   K    +    D   + +  
Sbjct: 237 IALLRDIFNPSFENIYINDEEAFRQVKDYVTLIAPSKSGIVKRYTGKVPIFDNFNITKQI 296

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            +     +N      +  E       +         +                  L    
Sbjct: 297 KSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRKENDQEANALEVNLGAADELARQL 356

Query: 333 ------------ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
                          +   ED   ++ R    +Q D      + L   G + I +     
Sbjct: 357 RLRDMGGIIVVDFIDMHLAEDRQMLYERMCKNMQSDRARHNILPLSKFGLMQITRQRVRP 416

Query: 381 SIDVNSGRSTREHCIEDTAL 400
            +DVN   +           
Sbjct: 417 VMDVNVDETCPTCNGTGKIK 436


>gi|114567132|ref|YP_754286.1| ribonuclease E and G [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338067|gb|ABI68915.1| RNAse G [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 476

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 128/408 (31%), Positives = 216/408 (52%), Gaps = 6/408 (1%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
           + V    K+   + E++K+ Q ++VQ+ KE    KGA VT  LS+ GR  VL+P      
Sbjct: 70  DVVRVGKKKGLNVYELLKSGQDIMVQVKKEAFSEKGARVTGDLSIPGRLLVLLPFQ-NEV 128

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
           +ISRKIT    RK+L+ +    +   G G+I+RTA       EI ++   L++ W+ +++
Sbjct: 129 SISRKITGDERRKHLRSLLEESKPENG-GIIVRTACLEAEDQEIIQELNRLLKTWEEIKQ 187

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
              N  AP L+YE+ ++++R +RD    ++S I+++  +   +  D++          +R
Sbjct: 188 RYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKDKILDYIS--GKKIFNSLR 245

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
              +   +F +  +E  +    + ++ L + GY+I ++TEA+  IDVNSG+ T +   E+
Sbjct: 246 VDYEEGALFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAMTVIDVNSGKFTGKDNFEE 305

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           T  + N+EAA EI RQLRLR L G+I++DFIDM+EK N   + K LK  L+KD+A  ++ 
Sbjct: 306 TVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDELIKVLKTGLEKDKANTRII 365

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
            I+  G LEM+R++ R  V+E  T  C+ C G G+I +  ++A    R +          
Sbjct: 366 GITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQALASEAKRKMAHMGYLENNQ 425

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            I       +   +L      I   E R G S+ ++   +LA   + I
Sbjct: 426 IICKAEPRLLK--ILKDDEKDIGYIERRSGKSVLLLSDPDLAPGEYKI 471


>gi|322434534|ref|YP_004216746.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX9]
 gi|321162261|gb|ADW67966.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX9]
          Length = 1344

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 246/481 (51%), Gaps = 2/481 (0%)

Query: 86   RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
            R+      +  + D                +D   +  +   +F+           ++  
Sbjct: 864  REPRRDRDDRGRRDGRRGDRGRRDRGSDRGSDRGGDRNSERGSFTSPGAGSDRPERSSSD 923

Query: 146  VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
                 D +GG       +      I E++K  Q +L QI KE    KGA +T++++L GR
Sbjct: 924  RGGSRDSRGGRGSRQSMQSTNLPAISELLKPGQEILCQIAKEPIAKKGARITSHIALPGR 983

Query: 206  YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
            + V MP  +    +SRKI +  +R+ LKEI    +  A  G I+RTA +  ++ E++ D 
Sbjct: 984  FLVFMPTVNHTG-VSRKIESDGERRRLKEILLSEKGEASGGFIVRTAASGASEEELRSDL 1042

Query: 266  EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             +L+ LW +++  + +S +P L+Y + NL++R +RD      S I V  E  Y     F+
Sbjct: 1043 RFLLNLWADIKARSESSKSPALIYHDLNLVERVLRDQVTDTFSAIWVDTETEYERVLRFL 1102

Query: 326  KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
            +   PS  R V+ Y    P+F + GI  +++   +++V L S G ++INQTEALV+ID+N
Sbjct: 1103 QRFQPSLIRRVKLYTKETPLFEQFGITEEINKALRSKVWLKSGGSIVINQTEALVAIDIN 1162

Query: 386  SGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
            +G+   +    EDT ++TNL+A  EI RQ+RLRDL G+I++DFIDM+E+KN   V   L+
Sbjct: 1163 TGKFVGKTARLEDTIVKTNLDAIPEIVRQIRLRDLGGIIIIDFIDMDERKNRNKVMAALE 1222

Query: 445  ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
            E LK DRA  +V   ++FGL+ ++R+R++ S+  + +  C  C G G ++S  +V   I 
Sbjct: 1223 EELKSDRAPSKVLQFNDFGLVAITRKRVKQSLERTLSTTCGVCAGTGMVKSPVTVCNDIY 1282

Query: 505  RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
              + +        ++++  H +VV  L +     + E E   G +I V     L  + F 
Sbjct: 1283 VEMRKMHKHLDRGDVMLRVHPEVVKQLKSGTSRWLQEMEEMCGKTILVKSDPSLHPEQFD 1342

Query: 565  I 565
            I
Sbjct: 1343 I 1343



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++ I +S   ETR+ ++ ++ + E+ +E E++  + G+IY  KVTRV P +Q++FVD
Sbjct: 1  MSKEIYI-SSTPHETRLAIVENDELAEIYYERENEYTLAGSIYNGKVTRVLPGMQSSFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G  R  FL   +
Sbjct: 60 IGLERDAFLYITD 72


>gi|319952650|ref|YP_004163917.1| ribonuclease, rne/rng family [Cellulophaga algicola DSM 14237]
 gi|319421310|gb|ADV48419.1| ribonuclease, Rne/Rng family [Cellulophaga algicola DSM 14237]
          Length = 516

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 126/565 (22%), Positives = 227/565 (40%), Gaps = 63/565 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           N+ LI  S  +     +L+D ++ EL    +      G+I++AKV +    L AAFV+ G
Sbjct: 2   NRELIVRSSSDTVDFALLKDGKLTELQKVEDSNNFSVGDIFIAKVRKPVTGLNAAFVNVG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             +  FL + ++ P       S     +K++++ +    ++ D     D+      +   
Sbjct: 62  YEKDAFLHYHDLGPQ-----LSTMLKFIKQASLGKLKDFSLKDFPFEEDINKDGAITDVI 116

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
            A  +   Q  +E                               +Y +      R  +  
Sbjct: 117 KANQSLLVQIVKEPISTKGPRISSE--------------LSIAGRYLVMVPFSERISVSQ 162

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           +I   E  ++   +   +   G   ++                                 
Sbjct: 163 KIESSEEKDRLKRLVKSIKPKGFGVIIR-------------------------------- 190

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
                   T    +   E+ +D + L+  W  + +    +  P  V  E N     +RD+
Sbjct: 191 --------TVAEGKKVAELDKDLQNLLAKWSVMCKKLYKAPHPSKVLVELNRASSILRDV 242

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQT 361
           +    + I V  E  Y + KD++  + P    IV+   ++  PIF + GIE Q+ +    
Sbjct: 243 FNDSFTGIHVDDEVLYEQVKDYVAEIAPEKESIVKLYSDNTVPIFEKFGIERQIKTSFGR 302

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
              +    Y+II  TEAL  +DVNSG RS +    E+TAL+ NL AA EIARQLRLRD+ 
Sbjct: 303 TAAMSKGAYLIIEHTEALHVVDVNSGNRSNKAKNQEETALEVNLLAASEIARQLRLRDMG 362

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDM + +N R +   L++ +K DRA+ ++   S FGL++++RQR+R  +   T
Sbjct: 363 GIIVVDFIDMTKGENRRRLFDHLRDEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIKT 422

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATI 539
           T+     KG   + +   +   I   +E+        + + ++ H  +  Y+     +  
Sbjct: 423 TEEDPNQKGQ-EVEAPIVLIDKINADLEKLFNGPAKDNAVTLNIHPFIAAYITKGFPSIR 481

Query: 540 VEYEARFGVSINVVIGIELADKLFY 564
            ++   +   I +          + 
Sbjct: 482 SKWFLEYKKWIKIQPRDAYTYLEYR 506


>gi|261880408|ref|ZP_06006835.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361]
 gi|270332953|gb|EFA43739.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361]
          Length = 524

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/498 (28%), Positives = 239/498 (47%), Gaps = 17/498 (3%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128
           P     ALL++  + +  +E  + + + G+V I               D   E  A +  
Sbjct: 11  PKEISIALLEDKRLVEYQNEPRSANFSVGNVYIAKVKKLMPGLNACFVDVGYERDAFLHY 70

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
               ++  S       V S+ + +   S        KR   +Q+ ++  Q +LVQIVKE 
Sbjct: 71  LDLGSQFNSYAKYLKQVQSDRKKLYPFSKASRLPDLKRDGSVQQTLQVGQEVLVQIVKEP 130

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
              KG  +T  LS AGR+ VL+P   K    ++  +     +   +       P G  VI
Sbjct: 131 ISTKGPRLTCELSFAGRFLVLIPFGDKVNVSTKIKSGEERAR--LKQLIRSIKPKGCSVI 188

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307
           +RT    +   E+  + + L + W N       +   P LVYEE       +RDL+    
Sbjct: 189 VRTVAEGKRVAELDVELKVLTKRWLNAIVKVQKTQDRPQLVYEEEGRTVAMLRDLFNASY 248

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             I V+ +  ++E KD++ L+ P    IV++Y+   PIF    +  Q+ S     V    
Sbjct: 249 ENIFVNEDDIFKEVKDYISLIAPKKVNIVKRYKGKVPIFDNFNVTKQIKSSFGKTVNYAH 308

Query: 368 RGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
             Y+II  TEA+  +DVNSG RS  E   E TAL+TNL AA+E+ARQLRLRD+ G+IVVD
Sbjct: 309 GAYLIIEHTEAMHVVDVNSGNRSKNEKGQEGTALETNLGAADELARQLRLRDMGGIIVVD 368

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++     + C  
Sbjct: 369 FIDMNLAEDRQMLYERMCKAMQKDRARHNILPLSKFGLMQITRQRVRPAMDVIVEENCPT 428

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G G IRS       +   +++ + +       +H H  V  Y+     +   +++ ++
Sbjct: 429 CNGTGKIRSSILFTDQLEGKIDQLVNKIGIKKFYLHVHPYVAAYIKQGVISLRRKWQHKY 488

Query: 547 GVSINVVIGIELADKLFY 564
           G  ++V+   +LA   + 
Sbjct: 489 GFGVHVISSQKLAFLQYE 506



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++IDA   +E  + +L D R+ E   E        GN+Y+AKV ++ P L A FVD
Sbjct: 1   MTSEVIIDAK-PKEISIALLEDKRLVEYQNEPRSANFSVGNVYIAKVKKLMPGLNACFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104
            G  R  FL +L++         Y +   SDR+ L   S  ++       
Sbjct: 60  VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPFSKASRLPDLKRD 109


>gi|225021682|ref|ZP_03710874.1| hypothetical protein CORMATOL_01710 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945673|gb|EEG26882.1| hypothetical protein CORMATOL_01710 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 953

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 137/562 (24%), Positives = 240/562 (42%), Gaps = 26/562 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G           R   I++ +K+   +LVQ+ K+  G KG  +TT +SLAGRY V +P  
Sbjct: 387 GEVDWRAANLGGRHRKIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPG- 445

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            K   ISRK+  P  ++   +      VPA   VI+RTA     +  I  D   L  LW+
Sbjct: 446 GKSAGISRKLPAPERKR--LKAILKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLWE 503

Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++E  L            +YEE N++ + +RDL+ +D + ++V G + +     +++ +
Sbjct: 504 QIQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSV 563

Query: 329 MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
            P     + +++         F    ++ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 564 APDLLDRLEKFDREAHGGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDV 623

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 624 NTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 683

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L +DR R Q+  +++ GL++++R+R+ + +LE+    C  C G G +     V    
Sbjct: 684 TEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVLIHDDPVEHHT 743

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           +    E   ++   +     H  V+      +       E                    
Sbjct: 744 ISDRPERRGKHGVPHQDPTRHPAVLAMEHQDESDEPEPAED-------FAEEPPFRPSEI 796

Query: 564 YIEKGSPV------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
            IE  +        +  +   ++    +   S  +N +      + +P  KS+    I +
Sbjct: 797 SIEGLAAAVIAPSSEDYLPATYEEAVSAYEASPRRNRKVRGNSLSDVPPQKSDFEPPIPE 856

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     R+RRR   ++   ++   A  V  +    +       +  +        
Sbjct: 857 PEPEPEPESGSRRRRRAVHKKVTESETAPAVDVDKLEETTHRTRKRRRVVRKTGSTATRR 916

Query: 678 LLENGAHGFTENYDVSIPPVST 699
                +     +   S    + 
Sbjct: 917 GATTQSRRSAASGKTSTDSATN 938



 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    S+ +  + GNIYL +V  V P+++AAF+D G  R+G L   E+
Sbjct: 330 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 389


>gi|297562318|ref|YP_003681292.1| ribonuclease, Rne/Rng family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846766|gb|ADH68786.1| ribonuclease, Rne/Rng family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 1007

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 131/546 (23%), Positives = 238/546 (43%), Gaps = 48/546 (8%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+ V+K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 459 GEVNWDSFGLDGQPKRIESVLKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGG 518

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      +P+G GVI+RTA    ++ E++RD   L + WD
Sbjct: 519 SMTG-ISRKLPDKERAR--LKQILKKVMPSGAGVIVRTAAEGASEEELERDITRLAKQWD 575

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           +++  + ++ AP L+  E +L  R +RD++ +D S ++VSGE+ +   ++++  + P+ +
Sbjct: 576 SIKRKSKSANAPSLLNSEPDLTVRVVRDVFNEDFSSLVVSGEEAWTTVREYVDYVAPNLS 635

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             +  + +   +F    ++ Q++   + +V LPS G ++I++TEA+  +DVN+G+ T + 
Sbjct: 636 ERLSHWNEDRDVFAAYRVDEQINKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQG 695

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V +++ E L +DR 
Sbjct: 696 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRT 755

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           + QV  +++ GL++M+R+R+   +LE+ +  C +C G G + +   V      S      
Sbjct: 756 KHQVAEVTSLGLVQMTRKRVGQGLLEAFSHSCEHCNGRGLVVASDPVESKGGGSGNGRKK 815

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
           +                                                    EK    Q
Sbjct: 816 KKGKGE------------------------------------------PDQAAEKPEKAQ 833

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
              +              +K      +          E+ E  Q             ++R
Sbjct: 834 KPSSEKA--DGADGPEKAEKAGADSDESAEADAARTEEAPEAPQTAEAPASEPAKKTRKR 891

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
             R R+  A       + +   + +    +      E +                   D 
Sbjct: 892 ASRSRKAEAAAEEQEEITATEEAPEAAQPEQAAEAPEEAPAKKTRARRTTRRTARGAADT 951

Query: 693 SIPPVS 698
                +
Sbjct: 952 GEAEAA 957



 Score = 98.5 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + L+     + T++ VL D+ + E   +    +   GN+YL +V  V PS++AAFVD G
Sbjct: 390 KRDLVVRRVEDRTQIAVLEDDILVEHYVDRATHRSYVGNVYLGRVQNVLPSMEAAFVDIG 449

Query: 63  GNRHGFLPFLEIHPDYY 79
             R+  L   E++ D +
Sbjct: 450 KGRNAVLYAGEVNWDSF 466


>gi|312143476|ref|YP_003994922.1| ribonuclease, Rne/Rng family [Halanaerobium sp. 'sapolanicus']
 gi|311904127|gb|ADQ14568.1| ribonuclease, Rne/Rng family [Halanaerobium sp. 'sapolanicus']
          Length = 560

 Score =  231 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 134/441 (30%), Positives = 228/441 (51%), Gaps = 2/441 (0%)

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
              K  K++  I+ V++  Q L+VQ+VKE  G+KGA VT  +S+ GR+ V +P+ +K   
Sbjct: 81  QKNKLSKKELNIKHVLQPGQWLMVQVVKEPMGSKGAKVTCKISIPGRFFVYIPSDNKIGV 140

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
             R   +    +   +   G       G+I+RT   S +  +++ D+ +L   W  +R  
Sbjct: 141 SRRITDDEERNR--LKSIAGDLKNGKEGLIIRTNAHSESYSKLQNDYNFLSGTWKRIRND 198

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
                   ++Y+E +L+K  IRD   ++I  ++V  +K Y+  +D   +  P     +  
Sbjct: 199 FFQKNNIDILYQEEDLLKNLIRDYLDENIDRVVVDDKKDYQRLRDLTSIFAPDLKNRIAL 258

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y+   PI     IE +++SL Q +V L S GY++I+QTEALV+IDVN+G+ T +  ++DT
Sbjct: 259 YQRNIPILAAYNIEKEIESLLQRKVWLKSGGYLVIDQTEALVAIDVNTGKFTGKKNLQDT 318

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
            ++ N EA  EIARQ++LRD+ G+I++DFIDM    + +SV   L   L+KDR +  +  
Sbjct: 319 IVKINKEAVAEIARQIKLRDIGGIIIIDFIDMNNSSDQQSVTDLLANELQKDRTKTSILG 378

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            +  GLLEM+R+++R        K C  C G G + S+S+VA+ ++R ++E  ++     
Sbjct: 379 FTQLGLLEMTRKKVREGFGSLMQKDCHCCGGTGKVLSESTVAMKVIRKIDEITIRDKYPA 438

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
           + +  H +V   L+      + E E +FG+ I +    EL  +   IEKGS  +   +  
Sbjct: 439 VSLELHPEVAAVLIGAGGEKLEELENKFGIDIFISGNTELNYEDMVIEKGSKEELQPDFL 498

Query: 579 HKVGSDSQAPSYDKNIECVWQ 599
                D      +        
Sbjct: 499 DLDVGDRITVEIEDQHASNQN 519



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ +++I+ S   E R  +L++N +E+L FE +  ++I GNIY  +V  V P +QAAFVD
Sbjct: 1  MSRQIIIN-SEFREKRAALLKNNTLEDLFFERDTYQKIAGNIYRGRVQDVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G  R+ FL   +++P
Sbjct: 60 IGIARNAFLHLNDLYP 75


>gi|328882427|emb|CCA55666.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Streptomyces venezuelae ATCC 10712]
          Length = 1265

 Score =  231 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 126/396 (31%), Positives = 217/396 (54%), Gaps = 6/396 (1%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 516 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 575

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 576 MGNGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 634

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ A + 
Sbjct: 635 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSG 692

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            AP L+Y E ++  R +RD++ +D S++IVSG++ +     ++  + P     + ++   
Sbjct: 693 NAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVHHVAPDLTDRLSKWTSE 752

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
             +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 753 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 812

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 813 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 872

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 873 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 908



 Score = 96.2 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 498 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 557

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 558 KGRNAVLYAGEV 569


>gi|294506385|ref|YP_003570443.1| Ribonuclease E [Salinibacter ruber M8]
 gi|294342713|emb|CBH23491.1| Ribonuclease E [Salinibacter ruber M8]
          Length = 596

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 143/514 (27%), Positives = 238/514 (46%), Gaps = 70/514 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +++ +  + E+TR+ ++ D ++ EL  E+   K+  GN+YL ++ +V PS+QAA   
Sbjct: 1   MSKEIVFNVGN-EQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAA--- 56

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                                         +   L
Sbjct: 57  ----------FVDIG---------------------------------QEQDAFLHFSDL 73

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +  P        E  ++ + +        D +     +                  Q +
Sbjct: 74  SDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNR----------------GQTI 117

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KE   NKG+ ++T +SLAGR+ VL+P       +SRKIT+  +R+ L E      
Sbjct: 118 LVQVTKEPISNKGSRISTDISLAGRFLVLVPLQ-NYVAVSRKITDDEERRRL-ESLASSL 175

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL-ALNSVAPHLVYEEGNLIKRAI 299
           VP G+GVI+RT    R    + +D + LM  W  V +        P LV+E+ ++    +
Sbjct: 176 VPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIV 235

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD + ++   I+V  E  Y   + +++ + P     V  +E   P+F   GI+   D   
Sbjct: 236 RDEFSEEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADRAF 295

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
           +  V LPS GY+ I +TEA+  +DVNSGRS +     + +L  NLEAA  IARQ+RLRDL
Sbjct: 296 KDRVELPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDL 355

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFID+ ++ + + V  ++K+  ++DRA  +V  +S+FGL+E++RQR+R S+  +
Sbjct: 356 GGIIVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTT 415

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
            +       G              LR  E  +  
Sbjct: 416 FSSA----NGTPSDDGDDGADPEELRQAERKIQS 445


>gi|158317018|ref|YP_001509526.1| ribonuclease [Frankia sp. EAN1pec]
 gi|158112423|gb|ABW14620.1| ribonuclease, Rne/Rng family [Frankia sp. EAN1pec]
          Length = 1427

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 126/345 (36%), Positives = 206/345 (59%), Gaps = 4/345 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++V+K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 846  GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPD- 904

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+ +    + LK I + +    G GVI+RTA    ++ E++RD E L+  W+
Sbjct: 905  GQNAGISRKLPDTERAR-LKSILKKITPENG-GVIVRTAAEGASEAELERDIERLVAQWE 962

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +++  A  + AP L+Y E +L+ R IRD++ +D +E++V G       + ++  + P   
Sbjct: 963  DIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVAPDLR 1022

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              VR+Y     +F    ++ QL      +V LPS G ++I++TEA+  IDVN+G+ T + 
Sbjct: 1023 DRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 1082

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 1083 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 1142

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            R QV  +++ GL++M+R+R+   +LE+ ++ C +C G G +    
Sbjct: 1143 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLD 1187



 Score = 97.7 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             +M I   + + T++ VL D  + E            GN+YL +V  V  S++AAFVD 
Sbjct: 777 ERRM-IVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDI 835

Query: 62  GGNRHGFLPFLEIHPD 77
           G  R+  L   E++ D
Sbjct: 836 GKGRNAVLYAGEVNYD 851


>gi|332878125|ref|ZP_08445854.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332683863|gb|EGJ56731.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 514

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 129/567 (22%), Positives = 227/567 (40%), Gaps = 65/567 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S        +LRD R+ EL  E +      G+I LAKV +    L AAFV+
Sbjct: 1   MEKELII-RSGSSYVDFALLRDGRLIELHKEEDTNGLGVGDIMLAKVRKPIQGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P       +     +K     +    ++ D     D+        
Sbjct: 60  VGHEKDAFLHYHDLGPQ-----LASLLKFIKWVISGKLKDFSLKDFPLEPDIDKNGSV-A 113

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           + + P      +  +E I +    + S +                 +Y +     +R  +
Sbjct: 114 DTLKPNQPILVQIVKEPISTKGPRISSEL-------------SIAGRYLVLVPFSDRISI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +    +   +   +   G              I R +        L +  + L 
Sbjct: 161 SQKIESKSEKERLRKLLQSIKPKGF-----------GVIVRTVAEGKKVAELDKDLQSL- 208

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                          W  +      +V P  V  E N     +R
Sbjct: 209 ----------------------------FNRWVLMCRKIQKAVYPSKVMSEVNRTGAILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           DL+    + I V  E+ Y + K +++ + P    IV+ Y    PIF +  IE Q+ +   
Sbjct: 241 DLFNDTFTGIHVDNEQLYEQIKKYVQEIAPEKESIVKLYRSSVPIFEKFHIERQIKTAFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419
             V++P   Y++I  TEAL  IDVNSG  + ++  ++ TAL  NL AA EIARQLRLRD+
Sbjct: 301 RTVSMPKGAYLVIEHTEALHVIDVNSGNHSNKNNDQETTALSVNLIAATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM    N R +   L++ + +DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMASSDNRRILFDHLRDEMAEDRAKHKILPPSKFGLIQITRQRVRQELNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVVLYLLNQKRAT 538
           T +     +G   I +   +   I   +E  + +      I+++ H  +  YL      +
Sbjct: 421 TKEENPSKEGE--IEAPIVLIDKINIELESIIKEDAYKGRIVLNAHPFIAAYLTKGFLNS 478

Query: 539 IV-EYEARFGVSINVVIGIELADKLFY 564
           I  ++  ++   I ++     +   + 
Sbjct: 479 IRFKWFLKYKRWIKILPRDAYSYLEYR 505


>gi|83814929|ref|YP_444634.1| ribonuclease [Salinibacter ruber DSM 13855]
 gi|83756323|gb|ABC44436.1| ribonuclease, Rne/Rng family subfamily [Salinibacter ruber DSM
           13855]
          Length = 596

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 143/514 (27%), Positives = 238/514 (46%), Gaps = 70/514 (13%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+ +++ +  + E+TR+ ++ D ++ EL  E+   K+  GN+YL ++ +V PS+QAA   
Sbjct: 1   MSKEIVFNVGN-EQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAA--- 56

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                     F++I                                         +   L
Sbjct: 57  ----------FVDIG---------------------------------QEQDAFLHFSDL 73

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +  P        E  ++ + +        D +     +                  Q +
Sbjct: 74  SDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNR----------------GQTI 117

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+ KE   NKG+ ++T +SLAGR+ VL+P       +SRKIT+  +R+ L E      
Sbjct: 118 LVQVTKEPISNKGSRISTDISLAGRFLVLVPLQ-NYVAVSRKITDDEERRRL-ESLASSL 175

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL-ALNSVAPHLVYEEGNLIKRAI 299
           VP G+GVI+RT    R    + +D + LM  W  V +        P LV+E+ ++    +
Sbjct: 176 VPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIV 235

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD + ++   I+V  E  Y   + +++ + P     V  +E   P+F   GI+   D   
Sbjct: 236 RDEFSEEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADRAF 295

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
           +  V LPS GY+ I +TEA+  +DVNSGRS +     + +L  NLEAA  IARQ+RLRDL
Sbjct: 296 KDRVELPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDL 355

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFID+ ++ + + V  ++K+  ++DRA  +V  +S+FGL+E++RQR+R S+  +
Sbjct: 356 GGIIVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTT 415

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
            +       G              LR  E  +  
Sbjct: 416 FSSA----NGTPSDDGDDGADPEELRQAERKIQS 445


>gi|304316596|ref|YP_003851741.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778098|gb|ADL68657.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 475

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 236/462 (51%), Gaps = 8/462 (1%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
           +D T  +  +    +   V  I     +   + + SA  D+          S  +   K 
Sbjct: 19  EDGTLVEYHVEYSDNRSIVGNIYKGKVKNTIKGMQSAFIDIGIGKNAYLFISDVNKKGKA 78

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                I ++IK  Q ++VQ+ K+  G K   VTT +SL G+Y VL+P T       R   
Sbjct: 79  DENCSITKLIKPGQDIIVQVSKDSIGLKNPKVTTNISLPGKYVVLLPETDYIGISHRIED 138

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
                + L         P  +G+I+RTA  +  ++E ++D   L  L+D + +      +
Sbjct: 139 EKKRLELL--NIAKRVKPDNLGIIIRTAAQNVNEVEFEKDILDLCYLYDEIIKKYKYVNS 196

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+YEE N I + IRDL    + EI+++  + Y +  D++K    + +           
Sbjct: 197 PELIYEEENFIVKYIRDLSSFMVDEIVINDVEQYEKTLDYIKKQGQNISIKYE----EGD 252

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +    GIE Q++ L   +V L S G++II++TEAL  IDVN+G+   +  +++T L+TN+
Sbjct: 253 LISLYGIEKQVERLLGKKVWLKSGGFIIIDKTEALTVIDVNTGKYVGKSSLQETILKTNI 312

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA+EIA QLRLRD+ G+IV+DFIDM+ + + + +    +ESLK DR++  V   ++ GL
Sbjct: 313 EAAKEIALQLRLRDIGGIIVIDFIDMDNESDRQKLLSVFEESLKSDRSKCSVLGFTHLGL 372

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R+RS+V E     C  CKG GY+ S + + L I R++E  L    A  I + ++
Sbjct: 373 VEMTRKRVRSNVSEYLQDKCECCKGTGYVMSNNMLVLKIKRTIERILRNTNAKKIKITSN 432

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
             ++  +          Y+ +FG  IN V+  +L    F ++
Sbjct: 433 RRILNLISQNDLK--KSYKEKFGAEINTVLNDKLDIDEFQVD 472



 Score = 92.0 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++L D S   + +V  L D  + E   E    + I GNIY  KV      +Q+AF+D G
Sbjct: 2  KRILFDISDKFD-QVAYLEDGTLVEYHVEYSDNRSIVGNIYKGKVKNTIKGMQSAFIDIG 60

Query: 63 GNRHGFLPFLEI 74
            ++ +L   ++
Sbjct: 61 IGKNAYLFISDV 72


>gi|167753147|ref|ZP_02425274.1| hypothetical protein ALIPUT_01418 [Alistipes putredinis DSM 17216]
 gi|167659461|gb|EDS03591.1| hypothetical protein ALIPUT_01418 [Alistipes putredinis DSM 17216]
          Length = 516

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 117/406 (28%), Positives = 195/406 (48%), Gaps = 3/406 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
               +    ++   I   ++  Q ++VQ+ KE    KG  +T  +SLAGR  VL+P +SK
Sbjct: 97  DAMKLEPPIEKSGKIGSYLQVGQTVMVQVAKEAISTKGPRLTADISLAGRNVVLVPFSSK 156

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +    ++   +      +P   GVI+RTA       +I++D   L+  W   
Sbjct: 157 VFLSQKIRSAEEKKR--LKGIAAAVLPKNFGVIIRTAAVEAKDSDIEQDIRSLLDKWQKT 214

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
            +    + AP  +  E N     IRD      S+I+V  E  Y E +++++ + P   ++
Sbjct: 215 LQNIRKNPAPAQLMSEMNRANTIIRDSLGGAFSQIVVDDEAMYHEIQNYIRQIEPQSEKL 274

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHC 394
           V+ Y+   PIF    I  Q+ SL    V+L    Y+II  TEA+  IDVNSG  T+ E  
Sbjct: 275 VKLYKGNVPIFDNFDISKQIKSLFAKYVSLRRGAYLIIEHTEAMNVIDVNSGNRTKAEDD 334

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            E TA   NL AA EIARQLRLRDL G++++DFIDM +  N + + +++ + +  D+A+ 
Sbjct: 335 QEQTAFDVNLAAAREIARQLRLRDLGGIVIIDFIDMHKAANRQLLYEEMNKLMATDKAKH 394

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            V  ++ FGL++++RQR+R   ++  T VC  C G G I     +   I   +       
Sbjct: 395 TVLPLTKFGLMQITRQRVRPVAVQDVTDVCPTCNGTGRIEPTVLLDKKIENKISYLAQDA 454

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
               I +     V  YL +   +    +  ++ + + +V    +  
Sbjct: 455 GHKYIKLRVSPYVSTYLNHGLWSLRRRWMWKYKIQLKIVADQSVGI 500


>gi|298207123|ref|YP_003715302.1| Ribonuclease G [Croceibacter atlanticus HTCC2559]
 gi|83849757|gb|EAP87625.1| Ribonuclease G [Croceibacter atlanticus HTCC2559]
          Length = 516

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 214/565 (37%), Gaps = 63/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  +        +L+D R+ EL  + +  K   G+I+ AK+ +  P L AAFV+
Sbjct: 1   MNKELII-RTSSSGVDFALLKDGRLIELQQDEDDNKFAVGDIFTAKIRKTVPGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  + GFL + ++ P                              VT G +   +  + 
Sbjct: 60  VGYEKDGFLHYHDLGPQ-------------------VGSLLKFVKQVTTGKLKDFSLKNF 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                I       +      +    V        G           +Y +     NR  +
Sbjct: 101 PLEKDIDKNGTVNDALKSNQSILVQVVKEPISTKGPRISSELSLAGRYIVLVPFSNRISV 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +E   +   +            + PN      I R +       ++    + L 
Sbjct: 161 STKIGTKEEKERLKRLVK---------SIKPN--NFGVIIRTVAEGKKVADIHTDLQNLM 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                             + +       P  V  E N     +R
Sbjct: 210 DRW-----------------------------TAMCKKMYRPNYPTKVLGEMNKASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE-DPHPIFFRSGIEVQLDSLH 359
           D++    + I V  E  + + KD++  + P    IV+ Y+    PIF + GIE Q+ +  
Sbjct: 241 DVFNDSFTSICVDDETLHTQIKDYVGEIAPEKESIVKYYDSSKVPIFEKFGIERQIKTSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
              V++    Y+II  TEA+  IDVNSG RS +    E TAL+ N+ +A E+ARQLRLRD
Sbjct: 301 GKTVSMSKGAYLIIEHTEAMHVIDVNSGNRSNKSKSQEGTALEVNMISATEVARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM + +N R +   L++ +  DRA+ ++   S FGL++++RQR R     
Sbjct: 361 MGGIIVVDFIDMGKAENRRKLFDHLRDEMSDDRAKHKILPPSKFGLIQITRQRTRPETNI 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            T +V     G   I +   +   I ++  +  ++     + +  H  +  YL     + 
Sbjct: 421 KTREVNPSNNGGEEIEAPIIIVEKI-KTDLQKAIKKGHKKMSITAHPFIAAYLTRGFPSP 479

Query: 539 IVEYEARFGVSINVVIGIELADKLF 563
              +       + V+         +
Sbjct: 480 RANWFFDHKRWVKVLPRDAYTYLEY 504


>gi|86739925|ref|YP_480325.1| ribonuclease [Frankia sp. CcI3]
 gi|86566787|gb|ABD10596.1| ribonuclease, Rne/Rng family [Frankia sp. CcI3]
          Length = 1194

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 125/345 (36%), Positives = 205/345 (59%), Gaps = 4/345 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++V+K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 620 GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVFVPD- 678

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISRK+ +    + LK I + +    G GVI+RTA    ++ E++RD E L   W+
Sbjct: 679 GQNAGISRKLPDTERAR-LKSILKKITPEDG-GVIVRTAAEGASEAELERDIERLAAQWE 736

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           ++   A  + AP L+Y E +L+ R IRD++ +D +E++V G       ++++  + P   
Sbjct: 737 DIERKAKKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSGEAITIEEYIDTVAPDLR 796

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             +R+Y     +F    ++ QL      +V LPS G ++I++TEA+  IDVN+G+ T + 
Sbjct: 797 SRIRRYTGTGDVFAEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 856

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 857 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 916

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           R QV  +++ GL++M+R+R+   +LE+ ++ C +C G G +    
Sbjct: 917 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCVHCNGRGVVIHLD 961



 Score = 97.4 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 2   ANKMLIDASHVEE-TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
             +M++   H  E T++ VL D  + E            GN+YL +V  V  S++AAFVD
Sbjct: 551 ERRMVV--RHAGERTQIAVLEDGVLVEHFVTRASSSSYAGNVYLGRVQNVLASMEAAFVD 608

Query: 61  YGGNRHGFLPFLEIHPD 77
            G  R+  L   E++ D
Sbjct: 609 IGKGRNAVLYAGEVNYD 625


>gi|150390069|ref|YP_001320118.1| ribonuclease [Alkaliphilus metalliredigens QYMF]
 gi|149949931|gb|ABR48459.1| ribonuclease, Rne/Rng family [Alkaliphilus metalliredigens QYMF]
          Length = 500

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 127/424 (29%), Positives = 224/424 (52%), Gaps = 3/424 (0%)

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
             +    V+D       +      +   I+E++K  Q ++VQ++KE   +KGA VT  ++
Sbjct: 62  EKNAFLYVKDALSEEMFNQDVTKLKDLNIRELVKPGQEIVVQVIKEPISSKGARVTRNIT 121

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
           L GRY VLMP T     +SR+I N  +R  LK     ++    MG+I+RT  A + K + 
Sbjct: 122 LPGRYLVLMPYTDYVG-VSRQIGNTAERDRLKSEIEEIKPA-NMGIIVRTVAAGKEKEDF 179

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           K D ++L++LW  + +       P  +Y++ +++ R IRD + K I   ++   + Y+++
Sbjct: 180 KDDIKFLLKLWLKIEKDKKLGYPPKTIYKDFDILNRTIRDTFTKSIERFVIDSPEAYQQS 239

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            + ++L+ P     ++ YE+P  IF   GIE Q+    + ++ L S GY+II+ TEAL  
Sbjct: 240 LELVELISPHLKDKLKLYEEPIDIFEYYGIESQIQKALEKKIWLQSGGYIIIDLTEALTV 299

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           IDVN+G+      +EDT  +TN+EA +EIA+QLRLR++ G+I++DFIDM      + V +
Sbjct: 300 IDVNTGKYVGSIDLEDTVFKTNMEATKEIAKQLRLRNIGGIIIMDFIDMTNPNQKQKVLE 359

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L++ L KDR R +V  ++  GL+EM+R+++R  +  +    C  C+G G I  + ++  
Sbjct: 360 LLEKELSKDRTRTKVLGMTQLGLVEMTRKKVRDRIESTLQTKCPTCEGTGRILCEQTMLT 419

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            + + +        A   IV  + +    ++   R  I E E +  + +       L+  
Sbjct: 420 KLEKMMIRTQKHTNAAAAIVDVNPNTYEAMM-VYRTVIEEIELQTNIKVYFNKSSALSFD 478

Query: 562 LFYI 565
              +
Sbjct: 479 DLKV 482



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 7  IDASHVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          I AS    ET+V +L    + EL  + ++ ++I GNIY  +V  V P ++AAFVD G  +
Sbjct: 4  IIASVSLIETKVALLEGQELVELYIDRKNSRRIVGNIYKGRVINVLPGMEAAFVDIGLEK 63

Query: 66 HGFLPFLE 73
          + FL   +
Sbjct: 64 NAFLYVKD 71


>gi|302389320|ref|YP_003825141.1| RNAse G [Thermosediminibacter oceani DSM 16646]
 gi|302199948|gb|ADL07518.1| RNAse G [Thermosediminibacter oceani DSM 16646]
          Length = 563

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 145/505 (28%), Positives = 252/505 (49%), Gaps = 21/505 (4%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R  +L++  + +   E   ++   G++      ++      A      E+ + +   +  
Sbjct: 15  RVGILEDRELVEFFIEKNFEERVAGNIYKGRVTNVLPGMQAAFVDIGLEKNAFLYVGDIN 74

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
           + +V   +    E +     R+  I+++++  Q +LVQ+VKE  G+KGA V+T ++L GR
Sbjct: 75  IDSVGPEEKDLLEGL-----RKLSIKDILRVGQEVLVQVVKEPMGSKGARVSTNITLPGR 129

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMP         R        +   +       P  MGVI+RTA   R + E+K D 
Sbjct: 130 YLVLMPRVDYVGISRRIEKEEERNR--LKALAEELRPPRMGVIVRTAAEGRGRDELKADI 187

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           +YL +LW++++       AP L+Y++ NL+ R +RD++  ++S   ++   GY +  + +
Sbjct: 188 DYLKKLWEDIQLRQRGGNAPRLIYKDMNLLARIVRDVFTPEVSRFYINSPSGYEKLLELV 247

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
            ++ PS    +  Y     IF    IE +++   + +V L S GY++I++TEAL +IDVN
Sbjct: 248 SMISPSLKDRISLYRGQEEIFEYFNIEQEIERALRRKVWLRSGGYIVIDRTEALTAIDVN 307

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           +G+      +EDT L+TNLEAA EIA+Q+RLRD+ G+I++DFIDM   ++ + V   L+ 
Sbjct: 308 TGKFVGSIDLEDTVLKTNLEAAREIAKQVRLRDIGGIIIIDFIDMNSPEHRKMVLDALES 367

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA----- 500
            LKKDR R  +  I++ GL+EM+R+++R S+ E   KVC YC+G G I S+ ++A     
Sbjct: 368 ELKKDRTRTHILGITSLGLVEMTRKKVRQSLDEVMEKVCPYCEGKGRILSEEAMAKRVER 427

Query: 501 --LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
               I R             +++  H  V   ++    + +   E R+   I +     L
Sbjct: 428 ELSRIFR-------NNRGEAVLIEVHPSVASSVIGAGGSRLSLLEQRYEKYIFIKGNASL 480

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGS 583
             +   +        L N    V  
Sbjct: 481 HPEEIKVRAVGSKAKLENLAVPVRE 505



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ +++ D    ++ RV +L D  + E   E   ++++ GNIY  +VT V P +QAAFVD
Sbjct: 1  MSKEIIADVGR-DQVRVGILEDRELVEFFIEKNFEERVAGNIYKGRVTNVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHPD 77
           G  ++ FL   +I+ D
Sbjct: 60 IGLEKNAFLYVGDINID 76


>gi|312195823|ref|YP_004015884.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c]
 gi|311227159|gb|ADP80014.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c]
          Length = 1230

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 123/335 (36%), Positives = 203/335 (60%), Gaps = 4/335 (1%)

Query: 166  RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            R   I++V+K  Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+  +   ISRK+ +
Sbjct: 678  RPRKIEQVLKPGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPD-GQNAGISRKLPD 736

Query: 226  PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
                + LK I + +    G GVI+RTA    ++ E++RD E L   W+++   A  + AP
Sbjct: 737  VERSR-LKSILKKITPEDG-GVIVRTAAEGASEQELERDIERLAAQWEDISRKAQKASAP 794

Query: 286  HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
             L+Y E +L+ R IRD++ +D +E++V G     + + ++ L+ P     VR++     +
Sbjct: 795  ALLYGEPDLVVRVIRDIFNEDFTELLVQGSGEAEQIESYVDLVAPDLRNRVRRHVGTTDL 854

Query: 346  FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNL 404
            F    ++ QL      +V LPS G ++I++TEA+  +DVN+G+ T +   +E+T  + NL
Sbjct: 855  FTEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGKGGNLEETVTKNNL 914

Query: 405  EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
            EAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR R QV  +++ GL
Sbjct: 915  EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 974

Query: 465  LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            ++M+R+R+   +LE+ ++ C +C G G +      
Sbjct: 975  VQMTRKRVGQGLLEAYSEPCAHCNGRGVLIHLDGH 1009



 Score = 93.9 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             +ML+     + T++ VL D  + E            GN+YL +V  V  S++AAFVD 
Sbjct: 597 ERRMLV-RHAGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDV 655

Query: 62  GGNRHGFLPFLEIHPD 77
           G  R+  L   E++ D
Sbjct: 656 GKGRNAVLYAGEVNYD 671


>gi|72162582|ref|YP_290239.1| ribonuclease E and G [Thermobifida fusca YX]
 gi|71916314|gb|AAZ56216.1| ribonuclease E and G [Thermobifida fusca YX]
          Length = 908

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 122/345 (35%), Positives = 204/345 (59%), Gaps = 4/345 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+ V+K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 435 GEVNWDATGLEGQPRRIESVLKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDG 494

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      +P G GVI+RTA    ++ E++RD   L + W+
Sbjct: 495 SMTG-ISRKLPDKERAR--LKQILKKVMPNGAGVIVRTAAEGASEEELERDIARLSQQWE 551

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           +++  A ++ AP L+  E +L  R +RD++ +D S ++VSG+  +   +D++  + P  A
Sbjct: 552 SIKRKAKSATAPALLSSEPDLTIRVVRDIFNEDFSSLVVSGDDAWETIRDYVNQVAPHLA 611

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             +  + +   IF    I+ Q+    + +V LPS G +II++TEA+  IDVN+G+ T + 
Sbjct: 612 DRLSHWTEDRDIFEAYRIDEQIAKALERKVWLPSGGSLIIDRTEAMTVIDVNTGKFTGQG 671

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V +++ E L +DR 
Sbjct: 672 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRT 731

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           + QV  +++ GL++M+R+R+   +LE+ +  C +C G G I    
Sbjct: 732 KHQVAEVTSLGLVQMTRKRVGQGLLEAFSHTCEHCNGRGLILQTD 776



 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + LI     E T++ VL DN + E   +    K   GN+YL +V  V PS++AAFVD G
Sbjct: 366 KRDLIVRRIGERTQIAVLEDNVLVEHYVDRADHKSYVGNVYLGRVQNVLPSMEAAFVDIG 425

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 426 KGRNAVLYAGEVNWD 440


>gi|239931307|ref|ZP_04688260.1| hypothetical protein SghaA1_24010 [Streptomyces ghanaensis ATCC
           14672]
 gi|291439681|ref|ZP_06579071.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342576|gb|EFE69532.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 1015

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 123/345 (35%), Positives = 201/345 (58%), Gaps = 4/345 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 267 GEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 326

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L   W+
Sbjct: 327 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQGQWE 383

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           ++++ + N  AP L+Y E ++  R +RD++ +D S+++VSG   +     ++  + P  A
Sbjct: 384 DIQKKSKNGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGPDAWETIHGYVSHVAPDLA 443

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             ++++     +F    I+ QL      +V LPS G ++I++TEA+V IDVN+G+ T + 
Sbjct: 444 DRLQKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQG 503

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 504 GNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRT 563

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           + QV  +++ GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 564 KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 608



 Score = 95.8 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   H + T++ VL D  + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 198 ERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 257

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 258 KGRNAVLYAGEV 269


>gi|282881457|ref|ZP_06290131.1| S1 RNA binding domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304683|gb|EFA96769.1| S1 RNA binding domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 524

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 204/401 (50%), Gaps = 4/401 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   +Q  +   Q +LVQIVKE    KG  +T  LS AGR+ VL+P   K    S+    
Sbjct: 108 KDGSVQSTLTVGQEVLVQIVKEPISTKGPRLTGELSFAGRFLVLIPFGDKVSVSSKIKKG 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVA 284
               +   +       P   GVI+RT    +    ++ + + L + W N           
Sbjct: 168 EERAR--LKQLVQTIRPKNCGVIVRTVAEGQRIAALEGEMKVLTKRWQNAIVKVQKTQNR 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LVYEE       +RD++  D   I V+ ++ YR+  D++ L+ P+ A IV++Y    P
Sbjct: 226 PQLVYEEAVRAIALLRDIFSPDFENIYVNNDEAYRQVSDYVSLIAPNKAGIVKKYTGSVP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF    I  Q+ S     +      Y+II  TEAL  +DVNSG  TR    ++  AL+ N
Sbjct: 286 IFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRNENGQEANALEVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +++ ++++ DRAR  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQLLYERMCKNMQNDRARHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R  +  S  + C  C G G IRS       +   +++ + +       +H 
Sbjct: 406 LMQITRQRVRPVMDVSVDETCPTCNGTGKIRSSILFTDRLEDKIDKLVNKIGIKRFYLHV 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           H  V  Y+     +   +++ ++G+ +N+V   +LA   + 
Sbjct: 466 HPYVAAYINQGIISLKRKWQIKYGLGVNIVPSQKLAFLQYE 506



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 1   MANKMLIDASHVEETRV--VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
           M ++++ID    +E  +   +L D R+ E   E        GN+Y+AKV ++ P L A F
Sbjct: 1   MTSEVVIDV---QEKDISTALLEDKRLVEYQNEPRSASFSVGNVYIAKVKKLMPGLNACF 57

Query: 59  VDYGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104
           VD G  R  FL +L++         Y +   SDR+ L   +  +        
Sbjct: 58  VDVGYERDAFLHYLDLGSQFNSYTKYLKQVQSDRKKLYPFAKASHLPDLKKD 109


>gi|163753444|ref|ZP_02160568.1| ribonuclease G [Kordia algicida OT-1]
 gi|161327176|gb|EDP98501.1| ribonuclease G [Kordia algicida OT-1]
          Length = 515

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 245/566 (43%), Gaps = 63/566 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S+  E    +L+D ++ EL  E ++     G                   D
Sbjct: 1   MNKELII-RSNSSEVDFALLKDGKLIELHKEEDNNDFAVG-------------------D 40

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                  FL                                        G      +   
Sbjct: 41  I------FLA--------------------------------KIRKPVSGLNAAFVNVGY 62

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E+ A +       +  S++     V +                  +   I + +K  Q +
Sbjct: 63  EKDAFLHYHDLGPQLPSLLKFIKRVSTGKLKDYTLKNFPFESNIDKNGSIMDAVKANQSI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +++ LS+AGRY VL+P + +  +IS+KI +  ++  LK +   ++
Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYIVLVPFSER-VSISQKIESKEEKDRLKRLVLSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G GVI+RT    +   E+ +D + L+  W  + +    +  P  V  E N     +R
Sbjct: 182 PK-GFGVIVRTVAEGKKVAELDQDLQNLLTKWSTMCKKLYKAEHPSKVLSEMNKASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++ +  + I V  E  Y E K++++ + P    IV+ Y+   P+F + G+E Q+ +   
Sbjct: 241 DIFNESFTGIQVDDEDLYYEIKEYVQKIAPKKESIVKLYQSKVPLFEKYGVERQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             V++    Y++I  TEAL  IDVNSG RS +    EDTAL+ NL AA EIARQLRLRD+
Sbjct: 301 KTVSMSKGAYLVIEHTEALHVIDVNSGNRSNKAKTQEDTALEVNLIAAREIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IV+DFIDM   ++ R++   LK  +K DRA+ ++   S FGL++++RQR+R  V   
Sbjct: 361 GGIIVIDFIDMTNAEHRRTLFDHLKTEMKDDRAKHKILPPSKFGLVQITRQRVRPEVNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRAT 538
           T +      G   + +   +   I   +E  L +    N + ++TH  +  YL     + 
Sbjct: 421 TREKNPN-GGGSEVEAPIVLVDKITTDLERILAKKDGFNGVTLNTHPFIAAYLTKGFPSI 479

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             ++       + ++         + 
Sbjct: 480 RFKWFLEHKKWVKILPRDAYTYLEYR 505


>gi|283457946|ref|YP_003362549.1| ribonuclease G and E [Rothia mucilaginosa DY-18]
 gi|283133964|dbj|BAI64729.1| ribonuclease G and E [Rothia mucilaginosa DY-18]
          Length = 1288

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 148/642 (23%), Positives = 260/642 (40%), Gaps = 44/642 (6%)

Query: 85   DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
            DRQ L+++ +            +    V+     SL     +               +  
Sbjct: 418  DRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 477

Query: 145  VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
               N     G    DV         I+  +K    +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 478  RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 537

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            R+ V +P  S    ISRK+ +    +  K +   L  P G GVI+RTA    ++ E+  D
Sbjct: 538  RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PEGAGVIVRTAAEGASEEELTHD 594

Query: 265  FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
               L   W+ ++E A +       ++Y+E +L+ + +RD++ +D + +IV GE  +   +
Sbjct: 595  INRLRAQWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIE 654

Query: 323  DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
             ++  + P     ++Q++    +F    I  QL      +V LPS G ++I++TEA+  +
Sbjct: 655  AYVTYVAPDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 714

Query: 383  DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
            DVN+G+ T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 715  DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 774

Query: 442  KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            +L E L +DR + QV  +++ GL++M+R+R+ + +LE  ++ C +C G G +     ++ 
Sbjct: 775  RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLVVHDQPLSG 834

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
                + +                +          R                         
Sbjct: 835  RSGGASDYIHRHERNDRKRSRAAA------REDSRDQ----------------------- 865

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                +K   +++         +   A S                  + +     +   +S
Sbjct: 866  ----QKQDALESKKAERRNAMAAVAAASAHSEEASEETASTRKKRKRRKRSRRAETAELS 921

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             E            +         D   V++V+   N I +     +E        + E 
Sbjct: 922  LEQEIQGIAEAASEQAHAEVAQREDK--VAEVTE-GNWIGEQGGFSLEQLASAFDRVEEE 978

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             A G +   D +         E   SS     K +R  KRR+
Sbjct: 979  SAEGSS--KDSAEERSDQERAEERRSSKRGEKKSSRNRKRRE 1018



 Score = 87.7 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
            ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 430 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 489

Query: 75  HPD 77
           + D
Sbjct: 490 NWD 492


>gi|294812601|ref|ZP_06771244.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064]
 gi|294325200|gb|EFG06843.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064]
          Length = 1456

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 143/551 (25%), Positives = 247/551 (44%), Gaps = 17/551 (3%)

Query: 105  DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
            +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 809  EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 868

Query: 163  KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                   I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 869  MGHGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 927

Query: 223  ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            + +    +   +      VP   GVI+RTA    ++ E++RD E L   W ++++ A + 
Sbjct: 928  LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKSG 985

Query: 283  VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
             AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P  A  + ++   
Sbjct: 986  SAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSE 1045

Query: 343  HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
              +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 1046 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 1105

Query: 402  TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
             NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 1106 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 1165

Query: 462  FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS---SVALSILRSVEEYLLQYTAHN 518
             GL++M+R+R+   +LES ++ C +C G G I       +V                   
Sbjct: 1166 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPQAVGGGGGGGKRARKRGRGGAE 1225

Query: 519  IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
                           ++    V   A        +               +  +A    G
Sbjct: 1226 HPHEHEQAAAPVPEPEQAPQTVAEVAAEVAEPVALPEPAFVPDEELYSSAAEAEAAAFRG 1285

Query: 579  HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI--------RK 630
                  ++  S           E ++   ++ S E +   +  E                
Sbjct: 1286 RGRRRATRRASAPAGAPRSTGSEVVIEAKETPSPEPVAPVVEPEAPQAPEAPADTEAAPP 1345

Query: 631  RRRRRRRRRPA 641
            R RRR  R+ +
Sbjct: 1346 RARRRVTRKAS 1356



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query: 12  VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71
            E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G  R+  L  
Sbjct: 800 GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA 859

Query: 72  LEI 74
            E+
Sbjct: 860 GEV 862


>gi|326440951|ref|ZP_08215685.1| ribonuclease E [Streptomyces clavuligerus ATCC 27064]
          Length = 1372

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 143/551 (25%), Positives = 247/551 (44%), Gaps = 17/551 (3%)

Query: 105  DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
            +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 725  EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 784

Query: 163  KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                   I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 785  MGHGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 843

Query: 223  ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            + +    +   +      VP   GVI+RTA    ++ E++RD E L   W ++++ A + 
Sbjct: 844  LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKSG 901

Query: 283  VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
             AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P  A  + ++   
Sbjct: 902  SAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSE 961

Query: 343  HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
              +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 962  VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 1021

Query: 402  TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
             NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 1022 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 1081

Query: 462  FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS---SVALSILRSVEEYLLQYTAHN 518
             GL++M+R+R+   +LES ++ C +C G G I       +V                   
Sbjct: 1082 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPQAVGGGGGGGKRARKRGRGGAE 1141

Query: 519  IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
                           ++    V   A        +               +  +A    G
Sbjct: 1142 HPHEHEQAAAPVPEPEQAPQTVAEVAAEVAEPVALPEPAFVPDEELYSSAAEAEAAAFRG 1201

Query: 579  HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI--------RK 630
                  ++  S           E ++   ++ S E +   +  E                
Sbjct: 1202 RGRRRATRRASAPAGAPRSTGSEVVIEAKETPSPEPVAPVVEPEAPQAPEAPADTEAAPP 1261

Query: 631  RRRRRRRRRPA 641
            R RRR  R+ +
Sbjct: 1262 RARRRVTRKAS 1272



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query: 12  VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71
            E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G  R+  L  
Sbjct: 716 GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA 775

Query: 72  LEI 74
            E+
Sbjct: 776 GEV 778


>gi|254392430|ref|ZP_05007611.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC
            27064]
 gi|197706098|gb|EDY51910.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC
            27064]
          Length = 1336

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 143/551 (25%), Positives = 247/551 (44%), Gaps = 17/551 (3%)

Query: 105  DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
            +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 743  EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 802

Query: 163  KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                   I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 803  MGHGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 861

Query: 223  ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            + +    +   +      VP   GVI+RTA    ++ E++RD E L   W ++++ A + 
Sbjct: 862  LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKSG 919

Query: 283  VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
             AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P  A  + ++   
Sbjct: 920  SAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSE 979

Query: 343  HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
              +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 980  VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 1039

Query: 402  TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
             NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 1040 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 1099

Query: 462  FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS---SVALSILRSVEEYLLQYTAHN 518
             GL++M+R+R+   +LES ++ C +C G G I       +V                   
Sbjct: 1100 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPQAVGGGGGGGKRARKRGRGGAE 1159

Query: 519  IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
                           ++    V   A        +               +  +A    G
Sbjct: 1160 HPHEHEQAAAPVPEPEQAPQTVAEVAAEVAEPVALPEPAFVPDEELYSSAAEAEAAAFRG 1219

Query: 579  HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI--------RK 630
                  ++  S           E ++   ++ S E +   +  E                
Sbjct: 1220 RGRRRATRRASAPAGAPRSTGSEVVIEAKETPSPEPVAPVVEPEAPQAPEAPADTEAAPP 1279

Query: 631  RRRRRRRRRPA 641
            R RRR  R+ +
Sbjct: 1280 RARRRVTRKAS 1290



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query: 12  VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71
            E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G  R+  L  
Sbjct: 734 GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA 793

Query: 72  LEI 74
            E+
Sbjct: 794 GEV 796


>gi|288921987|ref|ZP_06416196.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f]
 gi|288346649|gb|EFC80969.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f]
          Length = 1058

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 127/345 (36%), Positives = 206/345 (59%), Gaps = 4/345 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++V+K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 537 GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPD- 595

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISRK+ +    + LK I + +    G GVI+RTA    ++ E++RD E L+  W+
Sbjct: 596 GQNAGISRKLPDTERAR-LKSILKKITPENG-GVIVRTAAEGASEAELERDVERLVAQWE 653

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           +++  A  + AP L+Y E +L+ R IRD++ +D +E+IV G       ++++  + P   
Sbjct: 654 DIQRKAQKASAPSLLYGEPDLVVRVIRDVFNEDFTELIVQGSTEAATVEEYVDTVAPDLR 713

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             VR+Y     +F    ++ QL      +V LPS G ++I++TEA+  IDVN+G+ T + 
Sbjct: 714 DRVRRYVGTGDVFAEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 773

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 774 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 833

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           R QV  +++ GL++M+R+R+   +LE+ ++ C +C G G      
Sbjct: 834 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCSGRGVTIHLD 878



 Score = 98.9 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             +M++   H + T++ VL D  + E            GN+YL +V  V  S++AAFVD 
Sbjct: 468 ERRMVV-RHHGDRTQIAVLEDGVLVEHFVTRASSTSYAGNVYLGRVQNVLASMEAAFVDI 526

Query: 62  GGNRHGFLPFLEIHPD 77
           G  R+  L   E++ D
Sbjct: 527 GKGRNAVLYAGEVNYD 542


>gi|222530095|ref|YP_002573977.1| Rne/Rng family ribonuclease [Caldicellulosiruptor bescii DSM 6725]
 gi|222456942|gb|ACM61204.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor bescii DSM 6725]
          Length = 571

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 142/477 (29%), Positives = 232/477 (48%), Gaps = 14/477 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162
           +D    ++ I  + S   V  I     E     + +A  N     N     G        
Sbjct: 20  EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79

Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+P T      
Sbjct: 80  DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPCTEYVGVS 139

Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
            R  +    ++      + +     P GMG+I+RTA  ++++  +K + E+L  +W  +R
Sbjct: 140 KRIESEEERQR-----LKEIACRIRPEGMGLIVRTAAENKSEEILKSELEFLKNMWKKIR 194

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           + +  S AP L+Y++ +L+ +A+RD++   +   +++  K Y +  +F+    PS    V
Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             +     IF    IE +L       V L S GY++I++TEAL  IDVN+G+   +  + 
Sbjct: 254 EYFNLATNIFEYFQIEQKLSKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+   + + V   LKE+LK+D+ +  V
Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPDHQKIVLDALKEALKRDKTKTVV 373

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             I+  GL+EM+R+++R  +       C YC+G G I S  SVA  +L+ +E Y      
Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSNCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
               V  H+ V   L   +   I E E ++   I +     +    F I        
Sbjct: 434 DKFFVEIHTKVCEILRKGEIDRIKELEQKYKKKIYIKASSNIHINKFTICPVKDEDH 490



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   +TRV VL D  + E+  E E  + I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G  ++ FL   +++        +YY+I
Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87


>gi|299139560|ref|ZP_07032734.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX8]
 gi|298598488|gb|EFI54652.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX8]
          Length = 1177

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 147/465 (31%), Positives = 242/465 (52%), Gaps = 2/465 (0%)

Query: 102  AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161
              A          P     E             + +    + D         GG P    
Sbjct: 713  EEAVASGEEGEARPAQREGERRGRRDGRRGGRGDRNGDRGSRDKRGMANSRPGGRPGRHS 772

Query: 162  KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
             +      I +++K  Q +LVQI KE    KGA +T++++L GR+ V MP  +    +SR
Sbjct: 773  VQATDLPAISDLLKPGQEVLVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHVG-VSR 831

Query: 222  KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
            KI +  +R+ LKEI    +  A  G I+RTA +  ++ E++ D  +L+ LW ++++ + +
Sbjct: 832  KIDSDGERRRLKEILLSEKGDASGGFIVRTAASGASEEELRSDLRFLLNLWADIKQRSES 891

Query: 282  SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            S +P L+Y + NL++R +RD    + S I V  E  Y     F++   PS  R V+ Y  
Sbjct: 892  SKSPALIYHDLNLVERILRDQVTDNFSAIWVDTETEYERVLRFLQRFQPSLIRRVKLYTK 951

Query: 342  PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI-EDTAL 400
              P+F + GI  +++   +++V L S G ++INQTEALV+ID+N+G+   +    EDT +
Sbjct: 952  ETPLFEQFGITEEINKALRSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIV 1011

Query: 401  QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
            +TNL+A  EI RQ+RLRDL G+I++DFIDM+E+KN   V   L+E LKKDRA  +V   +
Sbjct: 1012 KTNLDAIPEIVRQIRLRDLGGIIIIDFIDMDERKNRHKVMAALEEELKKDRAPSKVLQFN 1071

Query: 461  NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
            +FGL+ ++R+R++ S+  + +  C  C G G ++S  +V   I   + +        +I+
Sbjct: 1072 DFGLVAITRKRVKQSLERTLSTTCGICAGTGMVKSPITVCNDIYIEMRKMHKHLDKGDIM 1131

Query: 521  VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +  + +VV  L +     + E E   G +I V     L  + F I
Sbjct: 1132 LRVNPEVVKQLKSGSGKWLQEMEEMSGKTILVKSDPSLHPEQFDI 1176



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++ I +S   ETR+ ++  + + E+ +E E++  + G+IY  +VTRV P +Q++FVD
Sbjct: 1  MSKEIYI-SSTPHETRLAIVEKDELTEIYYERENEYTLAGSIYNGRVTRVLPGMQSSFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G  R  FL   +
Sbjct: 60 IGLERDAFLYITD 72


>gi|29832008|ref|NP_826642.1| hypothetical protein SAV_5465 [Streptomyces avermitilis MA-4680]
 gi|29609126|dbj|BAC73177.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 1387

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 151/606 (24%), Positives = 267/606 (44%), Gaps = 11/606 (1%)

Query: 105  DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
            +D    +  +  + S   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 634  EDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 693

Query: 163  KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                   I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 694  MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 752

Query: 223  ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ A + 
Sbjct: 753  LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSG 810

Query: 283  VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
             AP L+Y E ++  R +RD++ +D +++IVSG++ +     ++  + P  +  + ++   
Sbjct: 811  NAPTLLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWETIHGYVAHVAPDLSDRLSKWTSE 870

Query: 343  HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
              +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T +   +E+T  +
Sbjct: 871  VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTR 930

Query: 402  TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
             NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 931  NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 990

Query: 462  FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
             GL++M+R+R+   +LES ++ C +C G G I               +   +  A   + 
Sbjct: 991  LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGKRKKRGRGGAEQELP 1050

Query: 522  HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
            H H      L  +        E    V+  V   + L    +  ++     A        
Sbjct: 1051 HEHE---HELAQEPEPDEAVAETEAEVAAEVAAPVALPAPGYEPDEELYSSAAEAEAAAS 1107

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
               S+  +  +         A    P+S + E    +  + E+  +  +           
Sbjct: 1108 RGRSRRRATRRASAPAGAPRAEERAPRSRAEERAPKSRAAAEAEPMAVEDPVVEPPVAAE 1167

Query: 642  TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD--VSIPPVST 699
                +  V   V+  +             +   +       A G  E      S P    
Sbjct: 1168 PVVAEPVVAEPVAVAEEEAAPKGRTRRRATRKVSAPAGSPKAAGEAETVTVVASAPEAEE 1227

Query: 700  PEMESS 705
            P+ E  
Sbjct: 1228 PKAEQP 1233



 Score = 92.0 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 616 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIG 675

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 676 KGRNAVLYAGEV 687


>gi|187251780|ref|YP_001876262.1| ribonuclease [Elusimicrobium minutum Pei191]
 gi|186971940|gb|ACC98925.1| Ribonuclease, Rne/Rng family [Elusimicrobium minutum Pei191]
          Length = 483

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 125/420 (29%), Positives = 229/420 (54%), Gaps = 7/420 (1%)

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
           N+   K             +  I++VIK  Q ++VQ+VK+  G KG  +T  ++L GR+ 
Sbjct: 66  NIGYEKNAYLYISDVLGDEKKNIEKVIKKGQEIMVQVVKDAIGTKGMKITMDVTLPGRFL 125

Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGL--EVPAGMGVILRTAGASRTKIEIKRDF 265
           VL P+ S    +S+ I +  +R  L ++ + L  +   GMG I+RT     TK E++R+ 
Sbjct: 126 VLTPHQS-FVGVSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEATKDELEREV 184

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           +YL R W ++        +P +++E+ + + +  RD+  ++I    +  +K Y    DF+
Sbjct: 185 KYLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKKDYENVLDFV 244

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
               P     ++ Y+   PIF    IE ++D+L +T+++LP+ G +II + E+L +IDVN
Sbjct: 245 SKNSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEAESLCAIDVN 304

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           +G+ T     E+T  QTN+EAA+E+A QLRLR++ G++V+DFIDM++  N   V + L +
Sbjct: 305 TGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNRHRVVEALAD 364

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
           ++ +DRA++++  I+  GL+EM+R+R + S     T+ C  C G+G + S  S+ + I R
Sbjct: 365 AVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSAESMRIKIQR 424

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            + +        N+ +  H ++   + +Q+       E     S+ +    +L+ + + I
Sbjct: 425 EIYDLTQGRPGGNLRIVLHPELADQIKHQQSV----IEQNIHRSMKIQSDAQLSWEDYKI 480



 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 1  MAN-------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPS 53
          M+        ++L + S  EETRV ++ + R+ EL +E      I GNIY A V  V P 
Sbjct: 1  MSKTSTGLKVEVLANTSF-EETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPG 59

Query: 54 LQAAFVDYGGNRHGFLPFLEI 74
          + +AFV+ G  ++ +L   ++
Sbjct: 60 ISSAFVNIGYEKNAYLYISDV 80


>gi|313159815|gb|EFR59171.1| ribonuclease, Rne/Rng family [Alistipes sp. HGB5]
          Length = 516

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 196/406 (48%), Gaps = 3/406 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
               +    ++   I + ++  Q ++VQI KE    KG  +T  +SLAGR  VL+P +SK
Sbjct: 97  ESMKLEPPVEKSGKIGDYLQVGQNIMVQIAKEAISTKGPRLTADISLAGRNVVLVPFSSK 156

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +  +    ++  +  A  L  P   GVI+RTA       +I+ D +  +  W   
Sbjct: 157 VFLSQKIRSVDEKKRLKRIAAAVL--PKNFGVIIRTAAMEAKDEDIEHDIQTQIDRWRKT 214

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
                 + AP  +  E N     IRD      S+I V  E  Y + + +++ + P   +I
Sbjct: 215 CAAIKKNTAPAQLMSEMNRANTIIRDSLNGSFSQIAVDDEAMYNDIRGYIRQIEPEKEKI 274

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHC 394
           V+ Y    PIF    I  Q+ SL    V+L    Y+II  TEA+  IDVNSG  T+ E  
Sbjct: 275 VKLYRGNVPIFDNFDISKQIKSLFAKYVSLRRGAYLIIEHTEAMNVIDVNSGNRTKAEDN 334

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            E TA+  NL AA EIARQLRLRDL G++++DFID+ + +N +++  ++ + +  D+A+ 
Sbjct: 335 QEQTAMDVNLAAAAEIARQLRLRDLGGIVIIDFIDLRKAQNRQALYDEMVKLMATDKAKH 394

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            V  ++ FGL++++RQR+R   +E  + VC  C G+G I     +   I   +       
Sbjct: 395 TVLPLTKFGLMQITRQRVRPVAVEEVSDVCPTCNGSGKIEPTVLLDKKIENQISFLTHDR 454

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
               I +     V  +L     +    ++ ++ V ++VV    L  
Sbjct: 455 GHKYIKLVVSPYVASFLKQGLWSLRRRWQWKYKVRLHVVADQSLGI 500


>gi|254796520|ref|YP_003081356.1| ribonuclease, Rne/Rng family [Neorickettsia risticii str. Illinois]
 gi|254589758|gb|ACT69120.1| ribonuclease, Rne/Rng family [Neorickettsia risticii str. Illinois]
          Length = 549

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 136/452 (30%), Positives = 222/452 (49%), Gaps = 5/452 (1%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
           E       + +   EVIK   +L VQ+ KE+R  K   +T Y+ L GRY VLMP   K  
Sbjct: 90  EGKHINLYKHFNATEVIKKGLVLFVQVTKEKRRTKDVTLTAYVKLPGRYCVLMPFL-KDL 148

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
            +S++I +      L             GV+ +   A   K  I  D+  L+  W+ V  
Sbjct: 149 ILSKQIVDEQAVSRLTHFVEEEMANRKYGVVFKPYCADADKKNIFGDYCSLLSEWEKVVS 208

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
               S AP LV+ E NL+K+ +RD Y   + E+IV+    Y+EAKD+++  +      + 
Sbjct: 209 QNDKSKAPRLVFREANLVKKFLRDSYDASVGEVIVNHSDVYQEAKDYIENSLHFENPNIT 268

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
            Y D  P+F +  +E Q++SL++  + L +  Y++IN TEAL ++DVNSGR  +E  IE+
Sbjct: 269 LYSDTFPVFDKYKVEPQVESLYEETIYLRNGAYIVINTTEALTAVDVNSGRMKKESNIEE 328

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           TA + N+EA  EI R L LR +AG++V+DFIDM   K   +VE+ L ++ K+ R+RVQ+ 
Sbjct: 329 TAYKVNMEAVGEIVRHLELRGIAGIVVIDFIDMNNSKYMLNVERALLDAFKRYRSRVQIA 388

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
            I+ FGL+ +S+QR + ++L+S T  C  C+G G +         +  ++          
Sbjct: 389 PINKFGLIALSKQRTKHNILDSHTVKCPCCEGKGKVLKLEHQVRKVFSAIY---TAPRCK 445

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIEKGSPVQALVN 576
            + V  + ++ + + N  R  + + E   G SI   I  +L     F I         + 
Sbjct: 446 EVTVTANPELAVAIFNGYRKMLAQAEEVVGGSIVFKIDEKLGLAKGFEIAFNEKDDVQIL 505

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
              +V +  +  S +K +        +     
Sbjct: 506 RDDQVVTTVEEQSNEKTVTKGSAVVEVESRRS 537



 Score = 92.0 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K+LID+    ETR+ +LR   +   D E       KGNIY   V +V+ SLQAAFV+Y 
Sbjct: 2  KKILIDSREG-ETRLAILRSGLLVGYDCEHTSSLPQKGNIYQGIVFKVDDSLQAAFVEYL 60

Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKE 92
             +GFLPF EI   Y+ +    +   + E
Sbjct: 61 PGEYGFLPFSEIPVVYFDLLEEVKANAIAE 90


>gi|332184903|gb|AEE27157.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Francisella cf. novicida 3523]
          Length = 498

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 223/422 (52%), Gaps = 2/422 (0%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
            V  +E     S E+   K      I + ++  Q +LVQ+VKE  GNKG  +T++LS++ 
Sbjct: 74  EVIPLEKDDEDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ V +P+        +       ++ L+ I +  +     G ILRTA    +  E++ D
Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            ++L  LW ++ +++   + P +VYE+ +LI + I      ++ +I+V     Y+E   F
Sbjct: 194 IKFLNNLWQDILDISSTIIRPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               +P     +  Y   H IF    IE +++      V L S GY++I QTEA+++ID+
Sbjct: 254 ADKYIPGLRDKIELY-QKHSIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G       +E+T  +TNLEA +EIARQLRLR+L G+I++DFIDM ++ +   V + LK
Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHKNQVLEALK 372

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + L+ D+A+  V  IS  GL+EM+R+R+  S+L +  + C +C G G +++  ++   I 
Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVKTLQTICYDIF 432

Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           R ++     Y + ++ ++ +   ++ Y+  ++   + E E     +I++ +        +
Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQY 492

Query: 564 YI 565
            I
Sbjct: 493 DI 494


>gi|331695829|ref|YP_004332068.1| ribonuclease, Rne/Rng family [Pseudonocardia dioxanivorans CB1190]
 gi|326950518|gb|AEA24215.1| ribonuclease, Rne/Rng family [Pseudonocardia dioxanivorans CB1190]
          Length = 1200

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 200/371 (53%), Gaps = 9/371 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ +     +LVQ+ K+  G+KGA +TT +SLAGR+ V +P+ 
Sbjct: 482 GEVDWDAAGLNGKARRIEQALSTGDSVLVQVTKDPIGHKGARLTTQISLAGRFLVYVPSG 541

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++ LK++ + +      GVI+RTA    T+  ++RD   L   W+
Sbjct: 542 GTAG-ISRKLPDTERKR-LKDMLKEIVPA-EAGVIIRTASEGVTQEALERDVRRLQAQWE 598

Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            VR            AP L+YEE +L+ + +RD + +D S ++VSG+  +    +++  +
Sbjct: 599 VVRSKADATGPNKVKAPALLYEEPDLLVKVVRDQFNEDFSRLVVSGDDAWDTVSNYIGHV 658

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P  +  + ++  P  +F    I+ QL      +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 659 APELSDRLHRHVGPTDVFTEYRIDEQLLKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK 718

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L
Sbjct: 719 FTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLTECL 778

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
            +DR R QV  +++ GL++M+R+R+   +LE  +  C +C+G G I S   V        
Sbjct: 779 ARDRTRHQVAEVTSLGLVQMTRKRVGGGLLEHFSTQCEHCRGRGVIVSTEGVEAKGEHKQ 838

Query: 508 EEYLLQYTAHN 518
                      
Sbjct: 839 GGDRQHERDGK 849



 Score = 91.6 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 11  HVEETRVVVLRDNRVEELDFES------EHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           H +   + VL D  + E                + GNI+L +V  V PS++AAFVD G  
Sbjct: 415 HGDRVEIAVLEDGVLVEHFVADGPASSGSAASSMVGNIHLGRVQNVLPSMEAAFVDIGRG 474

Query: 65  RHGFLPFLEIHPD 77
           R+  L   E+  D
Sbjct: 475 RNAVLYAGEVDWD 487


>gi|297160532|gb|ADI10244.1| ribonuclease, Rne/Rng family [Streptomyces bingchenggensis BCW-1]
          Length = 1410

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 155/600 (25%), Positives = 266/600 (44%), Gaps = 36/600 (6%)

Query: 105  DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
            +D    +  +  + S   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 729  EDNVLVEHFVNKEQSNSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 788

Query: 163  KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                   I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 789  LANGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 847

Query: 223  ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            + +    +   +      VP   GVI+RTA    ++ E+ RD + L   W+ +++ A N 
Sbjct: 848  LPDTERAR--LKQILKKIVPEDAGVIVRTAAEGASEDELSRDVQRLQAQWEEIQKKAKNG 905

Query: 283  VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
             AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P  A  ++++   
Sbjct: 906  GAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWDTIHGYVSHVAPDLADRLQRWTSD 965

Query: 343  HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
              +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T +   +E+T  +
Sbjct: 966  VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTR 1025

Query: 402  TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
             NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 1026 NNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 1085

Query: 462  FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS-------------------SVALS 502
             GL++M+R+R+   +LES ++ C +C G G I                            
Sbjct: 1086 LGLVQMTRKRVGQGLLESFSEPCVHCNGRGLIVHVDQPTAVGGGGGKRKKKKGAAGHLAE 1145

Query: 503  ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADK 561
              +  E   +   A   +V    + V    ++        E      +      EL +  
Sbjct: 1146 PEQVPETAEVVEAAAAAVVEAEPETVAEAAHEAAEHKTMPE-----PVTFAADEELYSSA 1200

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW-----QDEALLPIPKSESLEDIQ 616
                   +  +       KV + + AP   +  E        ++    P P  E   + +
Sbjct: 1201 AEAEAAATRGRTRRRATRKVTAPAGAPKAAERPEAAVVVVPAEEPKEAPAPAEEPKAEAE 1260

Query: 617  DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                 E  +    +RR  R+   PA     +   + V       D + +   EP  +   
Sbjct: 1261 PVAAPEPVSAPRARRRVTRKVTAPAGSPSGSEEAAVVVVSAAAQDSAPESAPEPVAVEPE 1320



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   + E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 711 ERVMVVRQNGERTQIGVLEDNVLVEHFVNKEQSNSYVGNVYLGKVQNVLPSMEAAFVDIG 770

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 771 KGRNAVLYAGEV 782


>gi|290969207|ref|ZP_06560732.1| S1 RNA binding domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290780713|gb|EFD93316.1| S1 RNA binding domain protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 477

 Score =  227 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 116/555 (20%), Positives = 215/555 (38%), Gaps = 92/555 (16%)

Query: 12  VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71
            EETR+ VL D ++ +   E + +  I  +IY   +  + P+LQAAFV+ G  ++ F+  
Sbjct: 10  PEETRLAVLEDGKLRDYAVERDDESHIVNHIYAGTIQNILPALQAAFVNIGRKKNAFIYM 69

Query: 72  LEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQ 131
            ++ P         R A  +E    +         ++ G   +      E+    A  + 
Sbjct: 70  GDLFP---------RAATKEEIQQTR---------ISVGQHILVQVVKEEQGGKGAKVTA 111

Query: 132 ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGN 191
                   +     V  V   K    E+   + +R   +  V      ++++ V E    
Sbjct: 112 NISLPGRYAVLMPTVDYVGVSKKIRQEEERDRLRR--IVGHVKPPGMGVIIRTVAEG--- 166

Query: 192 KGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRT 251
               VT     A    +L               + + ++        L       +++RT
Sbjct: 167 ----VTEEALQADITYLLHT------------WDSIRQRYKLAKKNQLLYR-EADLVMRT 209

Query: 252 AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311
                T                             ++    +  +R  +        E +
Sbjct: 210 VRDHVTADI------------------------EKIIVNHPDTYERIRQVFPDPTWQEKL 245

Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371
           +                          Y    P+F    IE ++  L   +V LPS G +
Sbjct: 246 I-------------------------YYTGKEPVFEAYHIEDEVRHLWSRQVALPSGGNL 280

Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431
           I + TEAL  IDVNS + T    +++T    N EAA+EIARQLRLRD+ G+I+VDFIDM 
Sbjct: 281 IFDYTEALTVIDVNSSKYTGNSTLQETIFHVNKEAAKEIARQLRLRDIGGIILVDFIDMA 340

Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
             ++  ++   L      D  + +V  ++   L+E++R++ R S+ +     CT C G G
Sbjct: 341 RAEDREAILAILSRETASDTRKTRVMGMTALNLVEITRKKSRQSLFQVQYTPCTVCGGTG 400

Query: 492 YIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
           Y+ +  SVAL I+R + + + +     ++++  H+ V+  +   ++  +  +E     S+
Sbjct: 401 YLYAAESVALQIMRRLRQLVRERRLRGDVLIVAHASVLAVMR--EKKQVARWERELARSL 458

Query: 551 NVVIGIELADKLFYI 565
           +    +    ++F I
Sbjct: 459 HFEESVHANREVFSI 473


>gi|260888407|ref|ZP_05899670.1| cytoplasmic axial filament protein [Selenomonas sputigena ATCC
           35185]
 gi|330838279|ref|YP_004412859.1| ribonuclease, Rne/Rng family [Selenomonas sputigena ATCC 35185]
 gi|260861943|gb|EEX76443.1| cytoplasmic axial filament protein [Selenomonas sputigena ATCC
           35185]
 gi|329746043|gb|AEB99399.1| ribonuclease, Rne/Rng family [Selenomonas sputigena ATCC 35185]
          Length = 479

 Score =  227 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 130/435 (29%), Positives = 221/435 (50%), Gaps = 3/435 (0%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
             +    A+ +      V +  +     V  I     +     + +A  D+         
Sbjct: 9   APEETRMAIVESDELLAVEVERESQSHLVGNIYKGQVQNVLPGMQAAFVDIGWEKNAFLY 68

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                  +  ++   +   I   Q L VQI K+  G KG   T +LS+ GR  VLMP  +
Sbjct: 69  IGDGVPHEGAQKTTPV-ARIHIGQRLPVQITKDAIGTKGPRATMHLSIPGRNVVLMPTAA 127

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
               ISR+I    +R  L+EIA  +    GMG+I+RTA   +T+   + D + L+RLW  
Sbjct: 128 YIG-ISRRIEGEAERARLREIAARICPA-GMGLIIRTAAHGQTEESFQEDVDRLVRLWQT 185

Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
           ++     + AP L+Y + +LI R +RD + ++I  + +      R  K+ ++ + P  A+
Sbjct: 186 LQAKNKMAKAPALLYRDADLIVRLVRDSFTEEIDALYIDDADACRRVKELVESISPELAQ 245

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            V  YE+  P+F R G+E +++ L + EV LPS G ++I++TEAL +IDVN+GR   +  
Sbjct: 246 RVHLYEEREPLFRRYGVEGEIERLGEREVVLPSGGSIVIDKTEALTAIDVNTGRYVGKAN 305

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           + DT  +TNLEAA EI +Q+RLRD+ G+I+VDFIDM+  +    +   L++ ++ DR + 
Sbjct: 306 LGDTVYRTNLEAAAEILKQIRLRDIGGIILVDFIDMDTDEQKEKLLAFLRDRVRFDRTKT 365

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            +  I+  GL+E++R++ R ++       C YC G G + S  ++A+ I R +     + 
Sbjct: 366 NIVDITALGLIEITRKKSRQNLESIIYSPCPYCHGRGRVESPETIAIRICRDIRRLESKA 425

Query: 515 TAHNIIVHTHSDVVL 529
            A    +   S +  
Sbjct: 426 HAGAYEIEVASRIAR 440



 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +L++ +  EETR+ ++  + +  ++ E E +  + GNIY  +V  V P +QAAFVD G
Sbjct: 2  KTILVNCA-PEETRMAIVESDELLAVEVERESQSHLVGNIYKGQVQNVLPGMQAAFVDIG 60

Query: 63 GNRHGFLPFLE 73
            ++ FL   +
Sbjct: 61 WEKNAFLYIGD 71


>gi|56708790|ref|YP_170686.1| ribonuclease G [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671262|ref|YP_667819.1| ribonuclease G [Francisella tularensis subsp. tularensis FSC198]
 gi|118498334|ref|YP_899384.1| ribonuclease G [Francisella tularensis subsp. novicida U112]
 gi|134302803|ref|YP_001122771.1| ribonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187932318|ref|YP_001892303.1| ribonuclease G [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194323921|ref|ZP_03057696.1| ribonuclease, Rne/Rng family [Francisella tularensis subsp.
           novicida FTE]
 gi|208780100|ref|ZP_03247443.1| ribonuclease, Rne/Rng family [Francisella novicida FTG]
 gi|224458006|ref|ZP_03666479.1| ribonuclease G [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254372002|ref|ZP_04987495.1| ribonuclease G [Francisella tularensis subsp. novicida GA99-3549]
 gi|254375144|ref|ZP_04990624.1| hypothetical protein FTDG_01334 [Francisella novicida GA99-3548]
 gi|254875661|ref|ZP_05248371.1| ribonuclease G [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605282|emb|CAG46437.1| Ribonuclease G [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321595|emb|CAL09820.1| Ribonuclease G [Francisella tularensis subsp. tularensis FSC198]
 gi|118424240|gb|ABK90630.1| ribonuclease G [Francisella novicida U112]
 gi|134050580|gb|ABO47651.1| Ribonuclease, Rne/Rng family [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569733|gb|EDN35387.1| ribonuclease G [Francisella novicida GA99-3549]
 gi|151572862|gb|EDN38516.1| hypothetical protein FTDG_01334 [Francisella novicida GA99-3548]
 gi|187713227|gb|ACD31524.1| ribonuclease G [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194321818|gb|EDX19301.1| ribonuclease, Rne/Rng family [Francisella tularensis subsp.
           novicida FTE]
 gi|208744104|gb|EDZ90405.1| ribonuclease, Rne/Rng family [Francisella novicida FTG]
 gi|254841660|gb|EET20096.1| ribonuclease G [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282160122|gb|ADA79513.1| Ribonuclease, Rne/Rng family protein [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332679075|gb|AEE88204.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Francisella cf. novicida Fx1]
          Length = 498

 Score =  227 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 223/422 (52%), Gaps = 2/422 (0%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
            V  +E     S E+   K      I + ++  Q +LVQ+VKE  GNKG  +T++LS++ 
Sbjct: 74  EVIPLEKEDDDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ V +P+        +       ++ L+ I +  +     G ILRTA    +  E++ D
Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            ++L  LW ++ +++   + P +VYE+ +LI + I      ++ +I+V     Y+E   F
Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               +P     +  Y   H IF    IE +++      V L S GY++I QTEA+++ID+
Sbjct: 254 ADKYIPGLREKIELY-QKHNIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G       +E+T  +TNLEA +EIARQLRLR+L G+I++DFIDM ++ +   V + LK
Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALK 372

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + L+ D+A+  V  IS  GL+EM+R+R+  S+L +  + C +C G G +++  ++   I 
Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIF 432

Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           R ++     Y + ++ ++ +   ++ Y+  ++   + E E     +I++ +        +
Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQY 492

Query: 564 YI 565
            I
Sbjct: 493 DI 494



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E R+ +  +N ++E+  E +++K+I GNIY  K+ RV P +QAAFVD G  + GFL   E
Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74

Query: 74 IHP 76
          + P
Sbjct: 75 VIP 77


>gi|312621612|ref|YP_004023225.1| ribonuclease, rne/rng family [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202079|gb|ADQ45406.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 571

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 141/477 (29%), Positives = 232/477 (48%), Gaps = 14/477 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162
           +D    ++ I  + S   V  I     E     + +A  N     N     G        
Sbjct: 20  EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79

Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                Y I+      +  Q ++VQ++KE    KG  VTT ++L GRY VL+P T      
Sbjct: 80  DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPCTEYVGVS 139

Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
            R  +    ++      + +     P GMG+I+RTA  S+++  +K + E+L  +W  +R
Sbjct: 140 KRIESEEERQR-----LKEIACRIRPEGMGLIVRTAAESKSEEILKSELEFLKNMWKKIR 194

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
           + +  S AP L+Y++ +L+ +A+RD++   +   +++  K Y +  +F+    PS    V
Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             +     IF    IE +L       V L S GY++I++TEAL  IDVN+G+   +  + 
Sbjct: 254 EYFNLATNIFEYFQIEQKLSKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+   + + V   LKE+LK+D+ +  V
Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPDHQKIVLDALKEALKRDKTKTVV 373

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
             I+  GL+EM+R+++R  +       C YC+G G I S  SVA  +L+ +E Y      
Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSNCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
               V  ++ V   L   +   I + E ++   I +     +    F I        
Sbjct: 434 DKFFVEINTKVCEILRKGEIDRIKDLEQKYKKKIYIKASSNIHINKFTICPVKDEDH 490



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D S   +TRV VL D  + E+  E E  + I GNIY   V  + P + AAFV+
Sbjct: 1  MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59

Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81
           G  ++ FL   +++        +YY+I
Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87


>gi|330995081|ref|ZP_08318998.1| S1 RNA binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329576657|gb|EGG58160.1| S1 RNA binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 525

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 122/401 (30%), Positives = 202/401 (50%), Gaps = 4/401 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   +Q  ++  Q +LVQIVKE    KG  +T  LS  GR+ VLMP   K    S+  + 
Sbjct: 108 KDGSVQTTLQQGQEILVQIVKEPISTKGPRLTCELSFPGRFLVLMPFQDKVSVSSKIKSA 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVA 284
               +   +       P   GVI+RT    +   E+  + + L++  ++    A   S  
Sbjct: 168 EERAR--LKQLIQSIKPKNFGVIVRTVAEGKRVAELDSELKVLVKRCEDAFIKAQKASKL 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LV+EE +     +RDL+      I ++    + E KD++ L+ P  A IV+QY    P
Sbjct: 226 PELVFEETSRTVAMLRDLFNPSYENIYINDTDIFNEVKDYVTLIAPESAGIVKQYTGKLP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403
           IF    +  Q+ S     V+     Y+II  TEAL  +DVNSG  ++    ++  AL  N
Sbjct: 286 IFDNFDVTKQIKSSFGKTVSYKHGAYLIIEHTEALHVVDVNSGNRSKSKDGQEANALDVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +++ E++KKDRAR  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQKLYERMCENMKKDRARHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R  +  +  +VC  C G G ++S       +   +     +    N  +H 
Sbjct: 406 LMQITRQRVRPVMDVNVDEVCPTCFGKGTVKSSFLFTDVLESKISTMANKLGIKNFTLHV 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           H  V  Y+     +   +++ ++G  + V+   +L    + 
Sbjct: 466 HPYVAAYINQGIVSLKRKWQVKYGFGLKVIPSQKLGFLQYE 506



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M +++++D    +E  + +L D R+ E   E      + GNIYLAKV ++ P L A FV+
Sbjct: 1  MTSEVIVDV-QPKEISIALLEDKRLVEFQKEGRSASFVVGNIYLAKVRKLMPGLNACFVN 59

Query: 61 YGGNRHGFLPFLEIHP------DYYQIPFSDRQAL 89
           G  R  FL +L++ P       Y +   SD++ L
Sbjct: 60 VGYERDAFLHYLDLGPKFNSYTKYLKQVTSDKKKL 94


>gi|256824998|ref|YP_003148958.1| RNAse G [Kytococcus sedentarius DSM 20547]
 gi|256688391|gb|ACV06193.1| RNAse G [Kytococcus sedentarius DSM 20547]
          Length = 959

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 131/495 (26%), Positives = 225/495 (45%), Gaps = 9/495 (1%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
               Q  I+  ++  Q +LVQ+ K+  G+KGA +T  +SL GRY V +P  +    ISRK
Sbjct: 394 PKGEQKRIESALQPGQPVLVQVTKDPIGHKGARLTGQISLPGRYLVYVPGNTTTG-ISRK 452

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           + +    +  K       VPA  GVI+RTA     + E++ D E L   W+ +       
Sbjct: 453 LPDTERARLKK--ILKDVVPADAGVIVRTAAEGAAEAELRADVERLTTQWERIAAAQAKG 510

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            AP LV+ E +L  R IRD++ +D ++++VSG   +     ++  + P     + ++E  
Sbjct: 511 SAPTLVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESVTSYIDAVAPDLTPKLERWEGE 570

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
             +F    IE Q+      +V LPS G +I ++TEA+  +DVN+G+       +E+T  +
Sbjct: 571 QDVFEHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMTVVDVNTGKFVGSGGNLEETVTK 630

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            N+EAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 631 NNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLARDRTKHQVAEVTS 690

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++M+R+R+ S ++E   + C +C G G +   + VA+    S         +     
Sbjct: 691 LGLVQMTRKRVGSGLVEVYGETCEHCDGHGLVVQDAPVAVRGGGSGGGRRSGRQSGKEGR 750

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                           ++ +       +  +    E   +      G   ++        
Sbjct: 751 QQGEAQAAP--RSSGPSVAQIARAVHAA-ALKGDEEGLPEEQA--AGGTDESAPQAPAAA 805

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
              +   + +   E   +++     P +      +    ++ ++G       R  RR  A
Sbjct: 806 AEGATDDAAEGVAEQAPREQTRAEQPATAPKAAAETASPAQATSGDAPAVTGRIGRRSAA 865

Query: 642 TDHHDAGVVSDVSSI 656
                  V  + SS 
Sbjct: 866 PVESAPQVGDEESSS 880



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 12  VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71
            E T+V VL D  + E   + + +  + GN+YL +V  V PS++AAFVD G  R+G L  
Sbjct: 324 AEYTQVGVLEDGVLVEHYIDRQQQTTMVGNVYLGRVQNVLPSMEAAFVDIGKGRNGVLYA 383

Query: 72  LEIHPDYYQIPFSDRQAL 89
            E++ D   +P  +++ +
Sbjct: 384 GEVNWDAAGLPKGEQKRI 401


>gi|294629329|ref|ZP_06707889.1| ribonuclease, Rne/Rng family domain-containing protein
           [Streptomyces sp. e14]
 gi|292832662|gb|EFF91011.1| ribonuclease, Rne/Rng family domain-containing protein
           [Streptomyces sp. e14]
          Length = 813

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 224/427 (52%), Gaps = 8/427 (1%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + ++  V  +     +    S+ +A  D+      V   G    +   
Sbjct: 294 EDDVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 353

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 354 MSGGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 412

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+ +++ + N 
Sbjct: 413 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIKKKSKNG 470

Query: 283 -VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
             AP L+Y E ++  R +RD++ +D S++IVSG++ +     ++  + P  A  + ++  
Sbjct: 471 GSAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLAPRLSRWTS 530

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTAL 400
              +F    I+ QL      +V LPS G ++I++TEA+V IDVN+G+ T +   +E+T  
Sbjct: 531 EVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVT 590

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           + NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  ++
Sbjct: 591 RNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVT 650

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
           + GL++M+R+R+   +LES ++ C +C G G I      +            +  A    
Sbjct: 651 SLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSAGAAGGKRRKRARAGA-EPH 709

Query: 521 VHTHSDV 527
            H H  V
Sbjct: 710 EHEHEAV 716



 Score = 93.9 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   H + T++ VL D+ + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 276 ERVMVVRQHGDRTQIGVLEDDVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIG 335

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 336 KGRNAVLYAGEV 347


>gi|254368431|ref|ZP_04984448.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC022]
 gi|157121325|gb|EDO65526.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC022]
          Length = 498

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 121/417 (29%), Positives = 221/417 (52%), Gaps = 2/417 (0%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           E     S E+   K      I + ++  Q +LVQ+VKE  GNKG  +T++LS++ R+ V 
Sbjct: 79  EKEDDDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSSRFLVF 138

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           +P+        +       ++ L+ I +  +     G ILRTA    +  E++ D ++L 
Sbjct: 139 LPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELENDIKFLN 198

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            LW ++ +++   + P +VYE+ +LI + I      ++ +I+V     Y+E   F    +
Sbjct: 199 NLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHFADKYI 258

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P     +  Y   H IF    IE +++      V L S GY++I QTEA+++ID+N+G  
Sbjct: 259 PGLREKIELY-QKHNIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDINTGGF 317

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                +E+T  +TNLEA +EIARQLRLR+L G+I++DFIDM ++ +   V + LK+ L+ 
Sbjct: 318 IGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALKKELEL 377

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           D+A+  V  IS  GL+EM+R+R+  S+L +  + C +C G G +++  ++   I R ++ 
Sbjct: 378 DKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIFREIKS 437

Query: 510 YLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               Y + ++ ++ +   ++ Y+  ++   + E E     +I++ +        + I
Sbjct: 438 ESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQYDI 494



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E R+ +  +N ++E+  E +++K+I GNIY  K+ RV P +QAAFVD G  + GFL   E
Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74

Query: 74 IHP 76
          I P
Sbjct: 75 IIP 77


>gi|309389483|gb|ADO77363.1| ribonuclease, Rne/Rng family [Halanaerobium praevalens DSM 2228]
          Length = 560

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 132/442 (29%), Positives = 222/442 (50%), Gaps = 2/442 (0%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            +   K  ++   I+ V++  Q L+VQ+VKE  G+KGA VT  +S+ GR+ V +P+ +K 
Sbjct: 79  NDQKKKLSQKDLNIKHVLQPGQWLMVQVVKEPMGSKGAKVTCKISIPGRFFVYIPSDNKI 138

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
               R   +    +   +           G+I+RT     +  +++ D+ +L   W  +R
Sbjct: 139 GISRRIDDDGERGR--LKSIAQDLKNGKEGLIIRTNARDESYTKLQNDYNFLSGTWKRIR 196

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
                     ++Y+E +L+K  IRD   + I  ++V  +K Y+   D   +  P     +
Sbjct: 197 NDFFKKNNIDILYQEEDLLKNLIRDYLDEKIDRVVVDDKKDYQRLIDLTSVFAPDLKNRI 256

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             Y+   PI     IE +++SL Q +V L S GY++I+QTEALVSID+N+G+ T +  ++
Sbjct: 257 ALYQRNIPILAAYNIEKEIESLLQRKVWLKSGGYLVIDQTEALVSIDINTGKFTGKKNLQ 316

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           DT ++TN EA  EIARQ++LRD+ G+I++DFIDM    + +SV   L   L+KDR +  +
Sbjct: 317 DTIVKTNKEAVAEIARQIKLRDIGGIIIIDFIDMNNHSDQQSVTDLLANELEKDRTKTSI 376

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
              +  GLLEM+R+++R        K C  C G G + S+S+VA+ ++R ++E + +   
Sbjct: 377 LGFTQLGLLEMTRKKVREGFGTLMQKDCPVCGGTGKVLSESTVAMKVIRKIDEIISRKKY 436

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576
             + +  H +V   L+      + E E +F V I +    EL  +   IEKGS       
Sbjct: 437 PAVSLEVHPEVAAVLIGAGGEKLQELEEKFEVDIFISGNAELKYEDIIIEKGSKEDLQPE 496

Query: 577 TGHKVGSDSQAPSYDKNIECVW 598
                  D      +       
Sbjct: 497 ILDLDAGDRITVKIEDQHASNE 518


>gi|302551388|ref|ZP_07303730.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736]
 gi|302469006|gb|EFL32099.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736]
          Length = 782

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 222/420 (52%), Gaps = 6/420 (1%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + S   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 152 EDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 211

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 212 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 270

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+ +++ A + 
Sbjct: 271 LPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIQKKAKSG 328

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            AP L+Y E ++  R +RD++ +D S+++VSG++ +     ++  + P  A  + ++   
Sbjct: 329 NAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAERLSKWTSE 388

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
             +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T +   +E+T  +
Sbjct: 389 VDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTR 448

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 449 NNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 508

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++M+R+R+   +LES ++ C +C G G I        S      +   +  A  +  
Sbjct: 509 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSSGGGGKRKKRARAGAAELPH 568



 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   H + T++ VL DN + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 134 ERVMVVRQHGDRTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIG 193

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 194 KGRNAVLYAGEV 205


>gi|89257202|ref|YP_514564.1| ribonuclease G [Francisella tularensis subsp. holarctica LVS]
 gi|115315536|ref|YP_764259.1| ribonuclease G [Francisella tularensis subsp. holarctica OSU18]
 gi|167011106|ref|ZP_02276037.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC200]
 gi|169656789|ref|YP_001429513.2| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290953776|ref|ZP_06558397.1| ribonuclease G [Francisella tularensis subsp. holarctica URFT1]
 gi|295312854|ref|ZP_06803585.1| ribonuclease G [Francisella tularensis subsp. holarctica URFT1]
 gi|89145033|emb|CAJ80407.1| Ribonuclease G [Francisella tularensis subsp. holarctica LVS]
 gi|115130435|gb|ABI83622.1| ribonuclease G [Francisella tularensis subsp. holarctica OSU18]
 gi|164551857|gb|ABU62557.2| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 498

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 223/422 (52%), Gaps = 2/422 (0%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
            V  +E     S E+   K      I + ++  Q +LVQ+VKE  GNKG  +T++LS++ 
Sbjct: 74  EVIPLEKEDDDSDENFKLKKLNTKDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ V +P+        +       ++ L+ I +  +     G ILRTA    +  E++ D
Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            ++L  LW ++ +++   + P +VYE+ +LI + I      ++ +I+V     Y+E   F
Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               +P     +  Y   H IF    IE +++      V L S GY++I QTEA+++ID+
Sbjct: 254 ADKYIPGLREKIELY-QKHNIFEEYDIENEINKALDKMVYLKSGGYLVIEQTEAMITIDI 312

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G       +E+T  +TNLEA +EIARQLRLR+L G+I++DFIDM ++ +   V + LK
Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALK 372

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + L+ D+A+  V  IS  GL+EM+R+R+  S+L +  + C +C G G +++  ++   I 
Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIF 432

Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           R ++     Y + ++ ++ +   ++ Y+  ++   + E E     +I++ +        +
Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQY 492

Query: 564 YI 565
            I
Sbjct: 493 DI 494



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E R+ +  +N ++E+  E +++K+I GNIY  K+ RV P +QAAFVD G  + GFL   E
Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74

Query: 74 IHP 76
          + P
Sbjct: 75 VIP 77


>gi|330469631|ref|YP_004407374.1| ribonuclease [Verrucosispora maris AB-18-032]
 gi|328812602|gb|AEB46774.1| ribonuclease [Verrucosispora maris AB-18-032]
          Length = 1028

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 231/478 (48%), Gaps = 9/478 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++ +K+   +LVQ+ K+  G+KGA +T++++L+GR+ V +P  
Sbjct: 559  GEVNWDTSGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPG- 617

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   ++ L+++ + L    G GVI+RTA    ++ E+ RD + L   W+
Sbjct: 618  GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 675

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +++  A    AP L+YEE +L+ R +RDL+ +D  E+++ G++ Y   + ++  + P   
Sbjct: 676  DIQAKAAEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDQSYDMVESYLSHVSPDLL 735

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              +R++     +F    I+ Q+      +V LPS G+++I++TEA+  +DVN+G+ T   
Sbjct: 736  ARLRRHVGTTDVFAEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 795

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V ++L E L +DR 
Sbjct: 796  GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 855

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
            + QV  I++ GL++M+R+RI + +LE+ ++ C  CKG G +     V             
Sbjct: 856  KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGLVIHTEPVP-----EKPRSGG 910

Query: 513  QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
                  +             + +R        R  V +  V     AD  ++   G  + 
Sbjct: 911  AEKVKAVASAAAPTTEQPTASSRRRARKSAAERTVVEVAEVDDTSSADADYHDTMGYDLS 970

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                        + +   +        D   L     +     +       +    R 
Sbjct: 971  RYEAETPATPDIADSQQGESARLAAPDDPDALAEDDEDDSGSGRRRSRRAGARRRTRP 1028



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E          + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 502 TQIAVLEDGVLVEHYVTRSSTGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 561

Query: 75  HPD 77
           + D
Sbjct: 562 NWD 564


>gi|296270425|ref|YP_003653057.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833]
 gi|296093212|gb|ADG89164.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833]
          Length = 990

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 127/415 (30%), Positives = 224/415 (53%), Gaps = 6/415 (1%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           + ++     A     AV +D    +  +  + +   V  +     +    S+ +A  D+ 
Sbjct: 507 ERIMIIRRNAGRTQVAVLEDGVLVEHYVDRESNRSYVGNVYLGKVQNVLPSMEAAFVDIG 566

Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
                V   G    D      +   I+  +K+ Q +LVQ+ K+  G+KGA +T+ ++L G
Sbjct: 567 KGRNAVLYAGEVNFDSAGLEGQPKRIEAALKSGQSVLVQVTKDPIGHKGARLTSQITLPG 626

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RY V +P+ S    ISRK+ +    +   +      +P   GVI+RTA    T+ E+ RD
Sbjct: 627 RYLVYVPDGSMTG-ISRKLPDKERAR--LKQILRKVMPENAGVIVRTAAEGATEEELSRD 683

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
              L   W++++  A  +  P L+  E +L+ R +RD++ +D S +IV G++ +   +++
Sbjct: 684 VARLAAQWESIQRKAKTASPPELLLGEPDLMIRVVRDIFNEDFSTLIVQGDEAWNTVEEY 743

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           ++ + P     ++++++   +F    I+ Q+    + +V LPS G ++I+QTEA+  IDV
Sbjct: 744 VRYVAPHLLDRLKKWDEETDVFTAYRIDEQIAKALERKVWLPSGGSLVIDQTEAMTVIDV 803

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G+ T +   +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L
Sbjct: 804 NTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRL 863

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            E L +DR + QV  +++ GL++M+R+R+   +LE+ +  C  C G G I S   
Sbjct: 864 LECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSTPCECCNGRGIIISSEP 918



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +++I   +   T+V VL D  + E   + E  +   GN+YL KV  V PS++AAFVD G
Sbjct: 507 ERIMIIRRNAGRTQVAVLEDGVLVEHYVDRESNRSYVGNVYLGKVQNVLPSMEAAFVDIG 566

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 567 KGRNAVLYAGEVNFD 581


>gi|145640375|ref|ZP_01795959.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae R3021]
 gi|145274961|gb|EDK14823.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae
           22.4-21]
          Length = 705

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 129/430 (30%), Positives = 202/430 (46%), Gaps = 27/430 (6%)

Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371
           +  +K + +AK+ +KL+ P +   V+ Y+   P+F    IE Q++S  Q EV LPS G +
Sbjct: 1   MIAQKIFEKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSI 60

Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431
           +I+ TEAL +ID+NS RSTR   IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM 
Sbjct: 61  VIDVTEALTAIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMT 120

Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
             ++ R VE +++++++ DRAR+Q+  IS FGLLEMSRQR+  S+ ES+  +C  C+G G
Sbjct: 121 PIRHQREVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTG 180

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +R   S++LSILR +EE  L+     +       +  YLLN+KR  I   E R  V I 
Sbjct: 181 KVRDNESLSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDII 240

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPK 608
           V     +    F + +    + +    + +          + +  +    +  A++  P 
Sbjct: 241 VAPNEAMETPHFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPA 300

Query: 609 SESL-------EDIQDNIVSEEST-----------------GVIRKRRRRRRRRRPATDH 644
            ES        E     +  + +                       + +  R  R    +
Sbjct: 301 VESAVVALSISEAAPTPVERKSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRN 360

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                    S      ++  +   E                  E         STP  E+
Sbjct: 361 QRRSQDRRSSRRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEA 420

Query: 705 SNSSSDPIVK 714
               ++P+ +
Sbjct: 421 KEERTEPVTQ 430


>gi|302391355|ref|YP_003827175.1| RNAse G [Acetohalobium arabaticum DSM 5501]
 gi|302203432|gb|ADL12110.1| RNAse G [Acetohalobium arabaticum DSM 5501]
          Length = 561

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 139/510 (27%), Positives = 251/510 (49%), Gaps = 6/510 (1%)

Query: 102 AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161
           A+ +D    ++    ++  + V  I           + +A  +V          S     
Sbjct: 17  AIVEDNELSEIYFERENEQQVVGNIYKGIVADVLPGMQAAFVNVGLEKNVFLHVSDALAL 76

Query: 162 KKFKRQYC---IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
              +++     IQEV++  Q ++VQI KE  G+KGA VT  L+L GRY VLM        
Sbjct: 77  VSEEKRKNKLSIQEVVQPGQKIMVQITKEPLGSKGARVTCDLNLPGRYLVLMITMDHIGI 136

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
             R   +    +   +       P   G+I+RTA A+++  ++KRDF +L++LW+ +   
Sbjct: 137 SRRITDDQERNR--LKGITQEIKPEDKGLIVRTAAANKSGADLKRDFNFLIKLWEKIIHH 194

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
             N  AP L++ + NL+ R +RD + K++  ++++  K + E  + +  + P+    V+ 
Sbjct: 195 YHNRQAPDLLHSDLNLVSRIVRDKFTKEVDRMLINDRKEFEETMELLDFISPNLKSKVQL 254

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y    PIF    +E  +D   + +V L   GY+I + TEAL ++DVN+G+      + DT
Sbjct: 255 YNRSKPIFEYYDLETAIDKTLKRKVWLDCGGYIIFDVTEALTAVDVNTGKYVGSTDLADT 314

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
            L+TN EAA+EIA+QL+LRD+ G+I++DFIDM+ K++ + V + L E+L+KD+ +  +  
Sbjct: 315 VLKTNKEAAKEIAKQLKLRDIGGIIIIDFIDMDNKQDQQEVLETLDEALQKDKTKTTILG 374

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY-LLQYTAH 517
           ++  GL+EM+R++ +  V E   K C YC+G+G + S+ +VAL  +R +      +    
Sbjct: 375 LTELGLVEMTRKKEKEGVEEFLQKSCPYCEGSGRVLSEDTVALRAIRKLRNLFANRDDEE 434

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
            +++  H  V   L+     ++ E EA     I V    +L  +   I +    + +   
Sbjct: 435 AVLLEVHPQVAARLIGLGGNSLKELEAELDRHIYVKGSKKLHIEEIDIVETGSKETIAEL 494

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
              V    +     +      + + +  I 
Sbjct: 495 ASPVEVGERKVLEIEETHVTNKQDGISRIE 524



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L+D    + TRV ++ DN + E+ FE E+++Q+ GNIY   V  V P +QAAFV+
Sbjct: 1  MVKEILVDVDFKD-TRVAIVEDNELSEIYFERENEQQVVGNIYKGIVADVLPGMQAAFVN 59

Query: 61 YGGNRHGFLPFLE 73
           G  ++ FL   +
Sbjct: 60 VGLEKNVFLHVSD 72


>gi|295097734|emb|CBK86824.1| RNAse G [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 357

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 103/356 (28%), Positives = 166/356 (46%), Gaps = 2/356 (0%)

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MP  S      R  +     +  K            G I+RTA    ++ ++  D  YL 
Sbjct: 1   MPGASHVGVSQRIESESERERLKK--VVSAYCDEQGGFIIRTAAEGISEEDLASDAAYLK 58

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           R+W  V E    +   + +Y E  L +R +RD     +  I V     Y    +F    +
Sbjct: 59  RVWTKVMERKKRNQTRYRLYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYI 118

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P    ++  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G  
Sbjct: 119 PEMPGLLEHYTGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAF 178

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L K
Sbjct: 179 VGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 238

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DR +  +   S  GL+EM+R+R R SV       C  C G G +++  +V   I+R +  
Sbjct: 239 DRVKTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVR 298

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               Y +   +V+    V   L  ++   + E E   G  + V I      + F +
Sbjct: 299 VHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 354


>gi|297194393|ref|ZP_06911791.1| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152254|gb|EDY62707.2| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486]
          Length = 603

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/396 (32%), Positives = 219/396 (55%), Gaps = 6/396 (1%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 124 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 183

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 184 MSGGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 242

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ A + 
Sbjct: 243 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSG 300

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            AP L+Y E ++  R +RD++ +D S+++VSG++ +     ++  + P  A  ++++   
Sbjct: 301 NAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWDTIHGYVSHVAPDLADRLQRWTSE 360

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
             +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 361 TDVFAVHRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 420

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 421 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 480

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 481 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 516



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 106 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 165

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 166 KGRNAVLYAGEV 177


>gi|167627065|ref|YP_001677565.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597066|gb|ABZ87064.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 509

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 217/422 (51%), Gaps = 2/422 (0%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
            V  +E     S E+          I + ++  Q +LVQ+VKE  GNKG  +T++LS++ 
Sbjct: 85  EVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 144

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ V +P+        +       ++ L  I +  +     G ILRTA    +  E++ D
Sbjct: 145 RFLVFLPDLDHIGISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAAEGASYEELEND 204

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            ++L  LW ++ +++   + P +VYE+ +LI + I      +  +I V     Y+E   F
Sbjct: 205 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVDDIDSYKEICQF 264

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               +P     +  Y   H IF    I+V+++      V L S GY++I QTEA+++ID+
Sbjct: 265 ADKYIPGLRDKIELY-QKHNIFEEYDIDVEINKALDKTVYLKSGGYLVIEQTEAMITIDI 323

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G       +E+T  +TNLEA +EIARQLRLR+L G+I++DFIDM ++ +   V + LK
Sbjct: 324 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDESHKNQVLEALK 383

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + L+ D+A+  V  IS  GL+EM+R+R+  S+L +  + C +C G G +++  ++   I 
Sbjct: 384 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVKTLQTICYDIF 443

Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           R ++     Y   +N ++ +   ++ Y+  ++   + E E     +I +          +
Sbjct: 444 REIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDKNIYLKAESNHIYNQY 503

Query: 564 YI 565
            I
Sbjct: 504 DI 505



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E R+ +  +N ++E+  E +++K+I GNIY  K+ RV P +QAAFVD G  + GFL   E
Sbjct: 26 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 85

Query: 74 IHP 76
          + P
Sbjct: 86 VIP 88


>gi|313891808|ref|ZP_07825413.1| putative ribonuclease G [Dialister microaerophilus UPII 345-E]
 gi|313119802|gb|EFR42989.1| putative ribonuclease G [Dialister microaerophilus UPII 345-E]
          Length = 473

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 208/462 (45%), Gaps = 9/462 (1%)

Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
                + +  D  L ++    N S+E   E  +    +VV+++  V            + 
Sbjct: 13  SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLDIGGGKNAYLRY 72

Query: 167 QYCIQEV--IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
              I         + LLVQI KE    KG  VT  +S  G+Y+VL+  T+       K  
Sbjct: 73  DDIINRDTLPTEGETLLVQIKKESTYTKGPLVTEKISFKGKYAVLIKGTNYIGVS--KKI 130

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +  D +          +P G G I+RT     +     ++ + L+   D V++       
Sbjct: 131 HDEDLREKFRNITKTILPEGYGAIIRTESIETSVESFLKELKKLIYESDVVQKRFKREKN 190

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
             L+Y   +L  R IRD   KD+ ++++  +  Y      +    P Y++ +  Y +  P
Sbjct: 191 TGLLYRNSDLSMRCIRDYLDKDVKKLLIDDKSTYNRMNKLISEYFPEYSKTITFYNEKKP 250

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F    IE ++  L++ ++ L S G +I +  EAL  IDVNSG   +    ED A   N 
Sbjct: 251 LFEVFNIEDEIQKLYKRKIELKSGGSIIFDYAEALTVIDVNSGSFNKNMSHEDVAFFVNK 310

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA EIARQLRLR + G+I++DFIDM++ K    +   LK+ LKKD  +  +  +++ GL
Sbjct: 311 EAACEIARQLRLRGIGGIIMIDFIDMKDLKRREQLIGYLKKELKKDFVKTVICGMTSLGL 370

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHT 523
           +EM+R+R   S+L      C+ C G G + +   ++  I + +E       +  ++ +  
Sbjct: 371 VEMTRERTVHSLLYKYYDDCSVCGGVGKVFTLKRISNKIHKDLEFMRKTGNSSFDLTIEC 430

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +V  YL    R  I  +E  FG  I +     L   ++ I
Sbjct: 431 QVEVANYL----RKYIDLWEKEFGKKIFIKENKSLHRDVYSI 468



 Score = 73.1 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L+  S  EE+ + V+ D  + +L  E    +++ G IY+  V  V  S+   F+D
Sbjct: 3  MNKYLLLSVS-SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLD 61

Query: 61 YGGNRHGFLPFLEI 74
           GG ++ +L + +I
Sbjct: 62 IGGGKNAYLRYDDI 75


>gi|297199646|ref|ZP_06917043.1| predicted protein [Streptomyces sviceus ATCC 29083]
 gi|297147454|gb|EDY57460.2| predicted protein [Streptomyces sviceus ATCC 29083]
          Length = 1115

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 123/346 (35%), Positives = 205/346 (59%), Gaps = 4/346 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 383 GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 442

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L   W+
Sbjct: 443 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWE 499

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           ++++ A +  AP L+Y E ++  R +RD++ +D S+++VSG++G+     ++  + P  A
Sbjct: 500 DIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEGWETIHGYVSHVAPDLA 559

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             ++++     +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T + 
Sbjct: 560 DRLQRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQG 619

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 620 GNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRT 679

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           + QV  +++ GL++M+R+R+   +LES ++ C +C G G I    +
Sbjct: 680 KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 725



 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D  + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 314 ERVMVVRQSGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 373

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 374 KGRNAVLYAGEV 385


>gi|329121085|ref|ZP_08249716.1| ribonuclease G [Dialister micraerophilus DSM 19965]
 gi|327471247|gb|EGF16701.1| ribonuclease G [Dialister micraerophilus DSM 19965]
          Length = 471

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 208/462 (45%), Gaps = 9/462 (1%)

Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
                + +  D  L ++    N S+E   E  +    +VV+++  V            + 
Sbjct: 11  SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLDIGGGKNAYLRY 70

Query: 167 QYCIQEV--IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
              I         + LLVQI KE    KG  VT  +S  G+Y+VL+  T+       K  
Sbjct: 71  DDIINRGTLPTEGETLLVQIKKESTYTKGPLVTEKISFKGKYAVLIKGTNYIGVS--KKI 128

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +  D +          +P G G I+RT     +     ++ + L+   D V++       
Sbjct: 129 HDEDLREKFRNITKTILPEGYGAIIRTESIETSVESFLKELKKLIYESDVVQKRFKREKN 188

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
             L+Y   +L  R IRD   KD+ ++++  +  Y      +    P Y++ +  Y +  P
Sbjct: 189 TGLLYRNSDLSMRCIRDYLDKDVKKLLIDDKSTYNRMNKLISEYFPEYSKTITFYNEKKP 248

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +F    IE ++  L++ ++ L S G +I +  EAL  IDVNSG   +    ED A   N 
Sbjct: 249 LFEVFNIEDEIQKLYKRKIELKSGGSIIFDYAEALTVIDVNSGSFNKNMSHEDVAFFVNK 308

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA EIARQLRLR + G+I++DFIDM++ K    +   LK+ LKKD  +  +  +++ GL
Sbjct: 309 EAACEIARQLRLRGIGGIIMIDFIDMKDLKRREQLIGYLKKELKKDFVKTVICGMTSLGL 368

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHT 523
           +EM+R+R   S+L      C+ C G G + +   ++  I + +E       +  ++ +  
Sbjct: 369 VEMTRERTVHSLLYKYYDDCSVCGGVGKVFTLKRISNKIHKDLEFMRKTGNSSFDLTIEC 428

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             +V  YL    R  I  +E  FG  I +     L   ++ I
Sbjct: 429 QVEVANYL----RKYIDLWEKEFGKKIFIKENKSLHRDVYSI 466



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L+  S  EE+ + V+ D  + +L  E    +++ G IY+  V  V  S+   F+D
Sbjct: 1  MNKYLLLSVS-SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLD 59

Query: 61 YGGNRHGFLPFLEI 74
           GG ++ +L + +I
Sbjct: 60 IGGGKNAYLRYDDI 73


>gi|297571631|ref|YP_003697405.1| ribonuclease, Rne/Rng family [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931978|gb|ADH92786.1| ribonuclease, Rne/Rng family [Arcanobacterium haemolyticum DSM
           20595]
          Length = 839

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 136/531 (25%), Positives = 232/531 (43%), Gaps = 23/531 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ +K+   +LVQ+ K+  G+KGA +T  ++LAGR+ VL+P  
Sbjct: 322 GEVNWDATGLEGKPRKIEQALKSGDPVLVQVTKDPIGHKGARLTAQITLAGRHLVLVPGG 381

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +      +    P   +   +      VPA  GVI+RTA    T+ ++K+D E LM+ W 
Sbjct: 382 AMTGISRKL---PERERTRLKKILKEVVPAEHGVIVRTAAEGATEEQLKQDVERLMKSWA 438

Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           ++   + +S   P L+  E  L  R +RD++ +D   + +SG+  +     ++  L P  
Sbjct: 439 DIEAKSKSSKNAPSLLKGEPELAVRVVRDIFNEDFRTLRISGDNAWETISHYVSDLSPEL 498

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
              + +++    IF  + ++ QL      +V LPS G ++I++TEA+  IDVN+G+ T  
Sbjct: 499 IDRLEKWDSNADIFQENRVDEQLQKAFDRKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGS 558

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +DR
Sbjct: 559 GGSLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRDLVLRRLIECLGRDR 618

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            R QV  +++ GL++M+R+R+   ++E+ +  C  C+G GYI          +   EE  
Sbjct: 619 TRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTTCECCEGRGYISHD-----HPVERDEEKP 673

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
            + T+        +       + K   +    A    +                      
Sbjct: 674 ARQTSKKEAKKKDAAKNTAESDSKHEEVKAALASIAAAATTKHEEM------------AA 721

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +            +   + +K  E    D      P+ +   D  D   SE +     K+
Sbjct: 722 EGGAPDADSADVPAAEKAVEKASEDAQADRPKRGRPRKKKTSDRSDTHESESAERDTPKK 781

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           R R+R                    +  +  +         IT      + 
Sbjct: 782 RGRKRATSADA-AQPDSAEKPREKSETPVKKTKKRVTSSGTITPTQRASSA 831



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ V+ D  + E       +  + GN+YL +V  V PS++AAFVD G  R+  L   E++
Sbjct: 266 QIAVIEDGVLVEHYVARHTQASMVGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVN 325

Query: 76  PD 77
            D
Sbjct: 326 WD 327


>gi|256375324|ref|YP_003098984.1| ribonuclease, Rne/Rng family [Actinosynnema mirum DSM 43827]
 gi|255919627|gb|ACU35138.1| ribonuclease, Rne/Rng family [Actinosynnema mirum DSM 43827]
          Length = 974

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/352 (33%), Positives = 197/352 (55%), Gaps = 6/352 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ + +   +LVQ+ K+  G+KGA +TT +SL GR+ V +P  
Sbjct: 381 GEVDWDAAGLEGKARKIEQALSSGDSVLVQVTKDPIGHKGARLTTQISLPGRFLVYVPGG 440

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++   +      VP   GVI+RTA     + E+ RD   L   W 
Sbjct: 441 G-ATGISRKLPDNERKR--LKDILKRVVPDDAGVIIRTASEGVAEEELARDVTRLQAQWQ 497

Query: 274 NVREL--ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            +++      + AP L+YEE +L+ + +RDL+ +D S ++V G + +     +++ + P 
Sbjct: 498 IIKDKAATPKAQAPQLLYEEPDLLVKVVRDLFTEDFSGLVVQGSEAWDTIDGYVRHVAPD 557

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
               + ++      F    I+ QL      +V LPS GY++I++TEA+  IDVN+G+ T 
Sbjct: 558 LQERLHRHVGNSDAFGEYRIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTG 617

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +D
Sbjct: 618 SGGNLEETVTRNNLEAAEEIVRQLRLRDVGGIIVIDFIDMVLESNRDLVLRRLTECLGRD 677

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           R R QV  +++ GL++M+R+R+ + +LE+ +  C +C+G G + +    A S
Sbjct: 678 RTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSSTCEHCRGRGLVVTTDPTAHS 729



 Score = 99.3 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    S     + GN+YL +V  V PS++AAF+D G  R+  L   E+
Sbjct: 324 TQIGVLEDGVLVEHFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEV 383

Query: 75  HPD 77
             D
Sbjct: 384 DWD 386


>gi|241667604|ref|ZP_04755182.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876149|ref|ZP_05248859.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842170|gb|EET20584.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 498

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 217/422 (51%), Gaps = 2/422 (0%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
            V  +E     S E+          I + ++  Q +LVQ+VKE  GNKG  +T++LS++ 
Sbjct: 74  EVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ V +P+        +       ++ L  I +  +     G ILRTA    +  E++ D
Sbjct: 134 RFLVFLPDLDHIGISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAAEGASYEELEND 193

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            ++L  LW ++ +++   + P +VYE+ +LI + I      +  +I V     Y+E   F
Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVDDIDSYKEICQF 253

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               +P     +  Y   H IF    I+V+++      V L S GY++I QTEA+++ID+
Sbjct: 254 ADKYIPGLRDKIELY-QKHNIFEEYDIDVEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G       +E+T  +TNLEA +EIARQLRLR+L G+I++DFIDM ++ +   V + LK
Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDESHKNQVLEALK 372

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + L+ D+A+  V  IS  GL+EM+R+R+  S+L +  + C +C G G +++  ++   I 
Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVKTLQTICYDIF 432

Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           R ++     Y   +N ++ +   ++ Y+  ++   + E E     +I +          +
Sbjct: 433 REIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDKNIYLKAESNHIYNQY 492

Query: 564 YI 565
            I
Sbjct: 493 DI 494



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E R+ +  +N ++E+  E +++K+I GNIY  K+ RV P +QAAFVD G  + GFL   E
Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74

Query: 74 IHP 76
          + P
Sbjct: 75 VIP 77


>gi|305681139|ref|ZP_07403946.1| S1 RNA binding domain protein [Corynebacterium matruchotii ATCC
           14266]
 gi|305659344|gb|EFM48844.1| S1 RNA binding domain protein [Corynebacterium matruchotii ATCC
           14266]
          Length = 929

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 135/562 (24%), Positives = 239/562 (42%), Gaps = 26/562 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G           R   I++ +K+   +LVQ+ K+  G KG  +TT +SLAGRY V +P  
Sbjct: 363 GEVDWRAANLGGRHRKIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPG- 421

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            K   ISRK+  P  ++   +      VPA   VI+RTA     +  I  D   L  LW+
Sbjct: 422 GKSAGISRKLPAPERKR--LKAILKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLWE 479

Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++E  L            +YEE N++ + +RDL+ +D + ++V G + +     +++ +
Sbjct: 480 QIQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSV 539

Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
            P     + +++         F    ++ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 540 APDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDV 599

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 600 NTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 659

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E+L +DR R Q+  +++ GL++++R+R+ + +LE+    C  C G G +     V    
Sbjct: 660 TEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVLIHDDPVEHHT 719

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           +    E   ++   +     H  V+      +       +                    
Sbjct: 720 ISDRPERRGKHGVPHQDPTRHPAVLAMEHQDESDEPEPTDD-------FAEEPLFRPSET 772

Query: 564 YIEKGSP------VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
            IE  +        +  +   ++    +   S  +N +      + +P  KS+      +
Sbjct: 773 SIEGLAAAVVAPSAEDYLPATYEEAVSAYEASPRRNRKVRGNSLSDVPPQKSDFEPPTPE 832

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                E     R+RRR   ++   ++   A  V  +    +       +  +        
Sbjct: 833 PEPEPEPESGSRRRRRAVHKKVTESEAAPAVDVDKLEETTHRTRKRRRVVRKTGSTATRR 892

Query: 678 LLENGAHGFTENYDVSIPPVST 699
                +     +   S    + 
Sbjct: 893 GATTQSRRSAASGKTSTDSATN 914



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    S+ +  + GNIYL +V  V P+++AAF+D G  R+G L   E+
Sbjct: 306 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 365


>gi|88801873|ref|ZP_01117401.1| Ribonuclease G [Polaribacter irgensii 23-P]
 gi|88782531|gb|EAR13708.1| Ribonuclease G [Polaribacter irgensii 23-P]
          Length = 509

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 119/563 (21%), Positives = 222/563 (39%), Gaps = 62/563 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
              LI  S+  +    +LRD ++ EL+ E+   K   G+I+LAK+ +V   L AAFV+ G
Sbjct: 2   KTELIIRSNSSDIDFALLRDGKLIELNNETTGNKFSVGDIFLAKIGKVLTGLNAAFVNVG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             + GFL + ++                           A    V+ G        +   
Sbjct: 62  YPKDGFLHYHDLG-------------------AQVNSLNAFIKKVSTGKYKEFTLKNFRF 102

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
              I       +           +        G           ++ +     NR  +  
Sbjct: 103 EEDINKNGSINDTLKTGQNLLVQIVKEPISTKGPRLSSELSIAGRFLVLVPFSNRVSVSQ 162

Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
           +I   +   +   +   +   G   +L    ++G+ ++    +  +  +  +        
Sbjct: 163 KIEDPKEKERLKRLAKSIKPKGFGVILRT-VAQGKKVAELDKDLQNSLDRWK-------- 213

Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302
                + ++   + T  +I  +      +  +V   +  S+                   
Sbjct: 214 ----TMCKSIANTNTPTKILSELNRASSILRDVMNESFTSI------------------- 250

Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362
                   + + E    E K++++ + P    IV+ +    PIF + GIE Q+ +     
Sbjct: 251 --------VTNDETLKVEIKEYLQEIYPEKEEIVKLHTSEVPIFEKYGIERQIKTSFGKT 302

Query: 363 VTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           V++    Y++I  TEAL  IDVNSG RS +    EDTAL+ NL +A E+ARQL+LRD+ G
Sbjct: 303 VSMSKGAYLVIEHTEALHVIDVNSGNRSNKAGSQEDTALEVNLISATEVARQLQLRDMGG 362

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
           +IVVDFIDM + +N   + + LKE +  DR + ++   S FGL++++RQR+R  +   TT
Sbjct: 363 IIVVDFIDMHKVENRNKLFQHLKEQMAFDRTKHKILPPSKFGLVQITRQRVRPELSIKTT 422

Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541
           +      G   + +   +   I   +E+++       I +H H  +  YLL    +   +
Sbjct: 423 EANPNKNGE--VEAPIVLLDKIEADLEKFISNPKNKKIQLHLHPFIAAYLLKGVNSIRFK 480

Query: 542 YEARFGVSINVVIGIELADKLFY 564
           +  +    I ++         + 
Sbjct: 481 WYLKHKKWITIIPRDAYTYLHYR 503


>gi|291515894|emb|CBK65104.1| ribonuclease, Rne/Rng family [Alistipes shahii WAL 8301]
          Length = 501

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 116/541 (21%), Positives = 209/541 (38%), Gaps = 59/541 (10%)

Query: 21  RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80
            D  + EL+ E        G+IYL KV ++ P L AAFV+ G  +  F+ +L++ P   Q
Sbjct: 3   EDKVLVELNKEQCQTGFAVGDIYLGKVRKIMPGLNAAFVNIGHEKDAFIHYLDLGP---Q 59

Query: 81  IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
            P    Q L+      +      +  +                 P    + +  E   + 
Sbjct: 60  FPS--LQKLVASQQPGKRGFRVESMKLE----------------PPVEKTGKIGEYLQVG 101

Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
               V    E +    P            +  V    ++ L Q ++     K        
Sbjct: 102 QQIMVQVAKEAISTKGPRLTADISLAGRNVVLVPFTSKVFLSQKIRSADEKKRLKRIAAA 161

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
            L   + V++          R        ++++   +                A+    +
Sbjct: 162 VLPKNFGVII----------RTAAMEAKDEDIEHDIQTQIDRWRKTCAAIKKNAASAPAQ 211

Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
           +  +      +  +    + + +A                        E + +  +GY  
Sbjct: 212 LMSEMNRANTIIRDSLNGSFSQIAV---------------------DDEAMYNEIRGYIR 250

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
             +  K       +IV+ Y+   PIF    I  Q+ SL    V+L    Y+II +TEA+ 
Sbjct: 251 QIEPEKE------KIVKLYKGNVPIFDNFDISKQIKSLFAKYVSLKRGAYLIIERTEAMN 304

Query: 381 SIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVNSG  T+ E   E TA+  NL AA+EIARQLRLRDL G++++DFID+ + +N +++
Sbjct: 305 VIDVNSGNRTKAEDNQEQTAMDVNLAAAKEIARQLRLRDLGGIVIIDFIDLHKAQNKQAL 364

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
             ++ + +  D+A+  V  ++ FGL++++RQR+R   +ES + VC  C G+G I     +
Sbjct: 365 FDEMVKLMATDKAKHTVLPLTKFGLMQITRQRVRPVAVESVSDVCPTCNGSGKIEPTVLL 424

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
              I   +           I +     V  +L     +    +E ++ V + +     + 
Sbjct: 425 DKKIENQISFLTQDRGHKFIKLVVSPYVAAFLRKGLWSLRRRWEWKYKVRLEIAEDQSIG 484

Query: 560 D 560
            
Sbjct: 485 I 485


>gi|269794462|ref|YP_003313917.1| ribonuclease, Rne/Rng family [Sanguibacter keddieii DSM 10542]
 gi|269096647|gb|ACZ21083.1| ribonuclease, Rne/Rng family [Sanguibacter keddieii DSM 10542]
          Length = 1265

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 132/489 (26%), Positives = 236/489 (48%), Gaps = 9/489 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      +   I++ +K+   +LVQ+ K+  G KGA +T+ ++LAGRY V +P  
Sbjct: 755  GEVNWDAAGMEGQPRRIEQALKSGDSVLVQVTKDPIGQKGARLTSQVTLAGRYLVYVPGG 814

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +    +  K       VP   GVI+RTA    ++ E++ D   L   W+
Sbjct: 815  GMTG-ISRKLPDTERARLKK--ILREVVPETAGVIVRTAAEGASEEELRADIARLQGQWE 871

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
             + + +  + AP L+  E +L  R +RD++  D + + VSG+  + E  +++  L P  A
Sbjct: 872  AIEKKSKTASAPALLQGEPDLAIRVVRDIFNDDFTSLTVSGDGAWSEISEYVNALAPDLA 931

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              V+++     +F  + I+ QL      +V LPS G ++I++TEA+  +DVN+G+ T   
Sbjct: 932  ERVKRWTSDKDVFAEARIDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSG 991

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V +++ E L +DR 
Sbjct: 992  GTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLGRDRT 1051

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
            + QV  +++ GL++M+R+R+   ++E+ ++ C +C G G+I              +    
Sbjct: 1052 KHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCDHCNGRGFIVHDEPNEKHFQGGSQPSGA 1111

Query: 513  QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
            Q  A +      +D      ++++    +      V +       +   L  I   +   
Sbjct: 1112 QVAAQS---SAPADGGDSKRSRRKRGGAKETESTTVPVLPEAREAVKATLATIAAAAAHA 1168

Query: 573  ALVNTG--HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
               +    H  GS  Q       +  V  ++ +  + ++E  +D+     + E+      
Sbjct: 1169 HEHDDEHGHAAGSAEQGELAVVEVTVVETEQVVDEVEQAEPADDVTVGEQATETETGAED 1228

Query: 631  RRRRRRRRR 639
               +  +R 
Sbjct: 1229 SDEQEPKRP 1237



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     + +  + GN+YL +V  V PS++AAF+D G  R+  L   E+
Sbjct: 698 TQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEV 757

Query: 75  HPD 77
           + D
Sbjct: 758 NWD 760


>gi|257055293|ref|YP_003133125.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017]
 gi|256585165|gb|ACU96298.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017]
          Length = 1093

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 160/664 (24%), Positives = 285/664 (42%), Gaps = 38/664 (5%)

Query: 9    ASHVEETRVVVLRDNRVEELDFESEHK---KQIKGNIYL-AKVTRVEPSLQAAFVDYGGN 64
            A     T VV +RD +  E + E++ +   + ++G+  L AK  R     +A     G  
Sbjct: 425  ADDPPNT-VVHVRDGKPAE-EKETKAEDGVRSVRGSTRLEAKRQRRRDGREA-----GRR 477

Query: 65   RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
            R   L   E     +       +  +  +    +    V +D    +  + +  S   V 
Sbjct: 478  RAPILSEAE-----FLARRESVERTMVVAERGDSTQIGVLEDGVLVEHFVTSSDSGSIVG 532

Query: 125  PIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182
             +     +    S+ +A  D+      V   G    D      +   I++ +     +LV
Sbjct: 533  NVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALTTGDHVLV 592

Query: 183  QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242
            Q+ K+  G+KGA +TT +SL GR+ V +P+      ISRK+     R+   +      VP
Sbjct: 593  QVTKDPVGHKGARLTTQISLPGRFLVYVPSGG-ATGISRKLPENERRR--LKDILKRIVP 649

Query: 243  AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGNLIKR 297
            +  GVI+RTA    ++ E+ RD   L   W+ ++E A       S AP L+Y+E +L+ +
Sbjct: 650  SDAGVIIRTASEGISEEELARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVK 709

Query: 298  AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
             IRDL+ +D  +++V G+  +   +++++ + P     V +Y     +F    I+ QL  
Sbjct: 710  VIRDLFTEDFKKLVVQGDTAWETIRNYVEHVAPDLLDRVERYVGTGDVFADYRIDEQLMK 769

Query: 358  LHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRL 416
                +V LPS GY++I++TEA+  IDVN+G+ T     +E+T  + NLE+AEEI RQLRL
Sbjct: 770  ALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRL 829

Query: 417  RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
            RD+ G+IV+DFIDM  + N   V ++L E L +DR R QV  +++ GL++M+R+R+ + +
Sbjct: 830  RDIGGIIVIDFIDMVLESNRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTRKRVGTGL 889

Query: 477  LESTTKVCTYCKGAGYIRSQSSV----ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
            LE+ +  C +CKG G I S          +          +  A         +      
Sbjct: 890  LEAFSTTCEHCKGRGVIVSTDPHRGNGHGNGHHGSRRSRNKSKAGEQHGTKAVEQAAQGP 949

Query: 533  NQKRAT-----IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
              ++       +        V++      E   +    ++               S +  
Sbjct: 950  TPEQRESAVSAVQAMANASKVALTKTSESESDAE--RADRSGEDTRTTVEAQPDESAAVD 1007

Query: 588  PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
               +  +    ++EA   +          +    +        +R +R     A    + 
Sbjct: 1008 GQRNGAVPVRPEEEAASTLSSVAKTSTSAEESAEDRPESTADGQREQRPTTTAAAAVSEP 1067

Query: 648  GVVS 651
             V +
Sbjct: 1068 AVRT 1071


>gi|227824837|ref|ZP_03989669.1| ribonuclease [Acidaminococcus sp. D21]
 gi|226905336|gb|EEH91254.1| ribonuclease [Acidaminococcus sp. D21]
          Length = 468

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 127/398 (31%), Positives = 201/398 (50%), Gaps = 7/398 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
             Q+ +   Q+LLVQ+VK+ RG KG  VT  ++L GRY VL P  ++     +       
Sbjct: 70  HKQDRLTEGQMLLVQVVKDCRGTKGPGVTRNVTLPGRYIVLEPFGNRISLSRKIT--CKS 127

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
            +          +P GMGV++RTA A     EI+ D   L+  W  +   +     P L+
Sbjct: 128 LRTRLRTLVQKSLPEGMGVVIRTAAAKAAAEEIENDLRQLLASWQVLLRRSKVGRGPQLL 187

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           Y E +L  R IRD   KD+ +IIV  E  Y   ++ ++ +  +  R    Y++   +F  
Sbjct: 188 YRELDLSIRMIRDYVTKDVQKIIVDDEATYHTVEELLQDMGLTEIR-TEWYQEKEDLFTH 246

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            G+  ++ S+    V LP  G ++ + TEA+  IDVNSG  +     E+T+L TN EAA 
Sbjct: 247 YGLNEEIASISDRVVPLPGGGSLVFDYTEAMTVIDVNSGHYSTGSDREETSLATNREAAL 306

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           EIARQLRLRD+ G+IV DFIDME K+    +   L+     DR + +V  ++   L+EM+
Sbjct: 307 EIARQLRLRDIGGIIVADFIDMERKEEQEEILDLLRREFAMDRMKPRVMGMTALNLVEMT 366

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE-YLLQYTAHNIIVHTHSDV 527
           R + R ++  +    C  C+G+G + S  +V + I R +   YL    A ++++  H  V
Sbjct: 367 RMKARRNLFGTVYTTCPMCQGSGRVESPETVYVEIRRRLRSLYLDHAMARSLVLSVHPLV 426

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             ++       + + E  FG  I +V    LA  +F +
Sbjct: 427 EEWIRIHG---MKDMEQEFGAKIRLVSNPSLAVGVFTL 461



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69
           EETR+ ++ D+++ +   E   +  + GNIY  +V+ V P +QAAF+D    ++GFL
Sbjct: 10 PEETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDLNVGKNGFL 67


>gi|318081174|ref|ZP_07988506.1| ribonuclease E [Streptomyces sp. SA3_actF]
          Length = 826

 Score =  224 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
           +     I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+
Sbjct: 200 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 258

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ A    
Sbjct: 259 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 316

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+Y E ++  R +RD++ +D ++++VSG++ +     ++  + P     + ++    
Sbjct: 317 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 376

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
             F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  + 
Sbjct: 377 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 436

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 437 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 496

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 497 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 531



 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D+ + E            GN+YL KV  V PS++AAF+D G
Sbjct: 122 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 181

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 182 KGRNAVLYAGEV 193


>gi|91217977|ref|ZP_01254929.1| Ribonuclease G [Psychroflexus torquis ATCC 700755]
 gi|91183835|gb|EAS70226.1| Ribonuclease G [Psychroflexus torquis ATCC 700755]
          Length = 513

 Score =  224 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 240/564 (42%), Gaps = 64/564 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  + LI  S  +     +L+D R+ EL  E+E      G+I                  
Sbjct: 1   MDKE-LIVRSSSDAVDFALLKDGRLIELHKETEGFDFSVGDI------------------ 41

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                  FL                           +     +     +           
Sbjct: 42  -------FLA------------------------KIRKALPGLNAAFVNVGYEKDGFLHY 70

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            ++ P      +  +++  +   +        +            +   I + + + Q +
Sbjct: 71  HDLGPNVKTMLKFVKKATSNQMKNFSLRDYPFEQE--------IDKNGSIADTLHSNQSI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ+VKE    KG  +++ LSLAGRY VL+P + +  ++S+KI +  ++  LK + + ++
Sbjct: 123 LVQVVKEPISTKGPRLSSELSLAGRYIVLVPFSDR-VSVSQKIESKEEKSRLKRLVKSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G  VI+RT    +   +I +D + LM+ W+N+      +  P  V  E N     +R
Sbjct: 182 PK-GFSVIIRTVAEGKKVADIDKDLQNLMKRWENMCRKLSKAHQPSKVLGELNKASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I +  +  Y + KD++  + P    IV  Y+   PIF + GIE Q+ +   
Sbjct: 241 DIFNDSFTSICIDDDVIYTQIKDYVGKISPDKESIVSNYDSKVPIFEKYGIERQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             VT+    Y++I  TEA+  IDVNSG RS +    EDTAL+ N+ +A EIARQLRLRD+
Sbjct: 301 KTVTMKKGAYLVIEHTEAMHVIDVNSGNRSNKAKNQEDTALEVNMISATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM    N R + + LK+ +  DRA+ ++   S FGL++++RQR+R  +   
Sbjct: 361 GGIIVVDFIDMNNPDNRRKLYEHLKDEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T +        G I +   +   I     + +L+     I +  H  +  YL+    +  
Sbjct: 421 TREKDP--NADGEIEAPIVIVNKI-NIDLQKILKKGTKKITLTAHPFIAAYLMKGFPSPR 477

Query: 540 VEYEARFGVSINVVIGIELADKLF 563
            ++       + +          +
Sbjct: 478 SKWFFDSKKWVKIQPRDAYNYLEY 501


>gi|284990123|ref|YP_003408677.1| ribonuclease, Rne/Rng family [Geodermatophilus obscurus DSM 43160]
 gi|284063368|gb|ADB74306.1| ribonuclease, Rne/Rng family [Geodermatophilus obscurus DSM 43160]
          Length = 1048

 Score =  224 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 117/351 (33%), Positives = 195/351 (55%), Gaps = 5/351 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +Q  I++ +K+   +LVQ+ K+  G+KGA +T  ++L GR+ V +P  
Sbjct: 454 GEVNWDAAGLSGKQRSIEQALKSGDKVLVQVTKDPIGHKGARLTQQVNLPGRFLVYVPGG 513

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP   GVI+RTA    ++ E+ RD   L   WD
Sbjct: 514 SMTG-ISRKLPDTERQR--LKDVLKKIVPEDAGVIIRTAAEGASEEELTRDVNRLQAQWD 570

Query: 274 NVREL-ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++     +S AP L+Y E +L  R IRD++ +D  E++V G+  +   + ++  + P  
Sbjct: 571 VIQRKAESSSNAPSLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWDTVEAYVAHVSPEL 630

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
              + ++     +F    I+ QL      +V LPS G ++I++TEA+  +DVN+G+ T  
Sbjct: 631 VGRLTRHTGEGDVFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGS 690

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E T  + N+EAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR
Sbjct: 691 GGNLEQTVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDR 750

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            + QV  +++ GL++M+R+R+   +LE  ++ C +C+G G +     V   
Sbjct: 751 TKHQVAEVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGVVVHIDPVDEK 801



 Score = 98.5 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM+I     E T++ VL D+ + E            GN+YL +V  V PS++AAF+D G
Sbjct: 386 RKMVI-RQRGERTQIAVLEDDVLVEHYVTQAQATSFAGNVYLGRVQNVLPSMEAAFIDIG 444

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 445 KGRNAVLYAGEVNWD 459


>gi|220932249|ref|YP_002509157.1| ribonuclease, Rne/Rng family [Halothermothrix orenii H 168]
 gi|219993559|gb|ACL70162.1| ribonuclease, Rne/Rng family [Halothermothrix orenii H 168]
          Length = 489

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 234/410 (57%), Gaps = 2/410 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
             + +  K + +  IQ V++  Q L+VQ+VKE    KGA VT  +SL GRY VL+P    
Sbjct: 78  DEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTCKISLPGRYLVLLPGE-Y 136

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
              ISRKI +  +R  LK+I   L+ P  MG+I+RT    +    ++ D+ YL R W  +
Sbjct: 137 RTAISRKIKDFDERDRLKKIVGKLKDP-DMGLIIRTNSRYKKADLLELDYSYLKRTWTQI 195

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +E   NS AP L+YE  +L+K  +RD   KD+ ++++  E  YR   +  + L P     
Sbjct: 196 KENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYRVLLELSEKLAPDLKNR 255

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           +  Y    PIF   GIE +L+   + ++ L S G+++I QTEALV+IDVN+G+ T +   
Sbjct: 256 INLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEALVAIDVNTGKYTGKKNA 315

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
             T L+TNLEAA EIARQLRLRD+ G+I++DFIDM+E+++ + V +  ++ L KDR+   
Sbjct: 316 ARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEVLETFEKELAKDRSVTS 375

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           +  ++  GLLEM+RQ++R  + E   K C+YC+G G I S +SVA SI+R+++       
Sbjct: 376 IQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSANSVAESIIRNIQLKKASEE 435

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               +V  H  VV  L       + +   + GVS+ +     L  + + I
Sbjct: 436 FSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLHIEKYRI 485



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M N+++I+ S ++E R  +L DN +E++  E +  K+I GN+Y A+V  V P +QAAFVD
Sbjct: 1  MVNQIIIN-SGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G +++ FL   +I+P
Sbjct: 60 IGYDKNAFLHVSDIYP 75


>gi|302534384|ref|ZP_07286726.1| predicted protein [Streptomyces sp. C]
 gi|302443279|gb|EFL15095.1| predicted protein [Streptomyces sp. C]
          Length = 1071

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 124/399 (31%), Positives = 219/399 (54%), Gaps = 8/399 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 321 EDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 380

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 381 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 439

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN- 281
           + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ +   
Sbjct: 440 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQI 497

Query: 282 -SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            + +P L+Y E ++  R +RD++ +D S++I+SG++ +     ++  + P  A  + ++ 
Sbjct: 498 TTSSPSLLYGEPDMTVRVVRDIFNEDFSKVIISGDQAWETIHGYVNHVAPDLADRLSRWT 557

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTA 399
               +F    I+ QL      +V LPS G ++I++TEA++ IDVN+G+ T +   +E+T 
Sbjct: 558 SEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGKFTGQGGNLEETV 617

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            + NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V +++ E L +DR + QV  +
Sbjct: 618 TRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEV 677

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           ++ GL++M+R+R+   +LES ++ C +C G G I    +
Sbjct: 678 TSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 716



 Score = 93.5 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 303 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIG 362

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 363 KGRNAVLYAGEV 374


>gi|227503064|ref|ZP_03933113.1| ribonuclease E [Corynebacterium accolens ATCC 49725]
 gi|227076125|gb|EEI14088.1| ribonuclease E [Corynebacterium accolens ATCC 49725]
          Length = 1285

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 144/589 (24%), Positives = 252/589 (42%), Gaps = 36/589 (6%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G       K   R   ++  +K+   +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 473  GEIDWRKTKLHGRSRKVENTLKSGDQILVQVAKDPIGHKGARLTTRISLAGRYLVYVPG- 531

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++   +   G  VP   G I+RTA  +  +  I  D + L   W+
Sbjct: 532  GRSAGISRKLPAPERKR--LKDILGRVVPGDGGAIIRTAAENVPEEAIATDVQRLHNRWE 589

Query: 274  N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +      +E +     P  +YEE N++ + +RDL+ +D   +IV G++ +     +++ +
Sbjct: 590  DISAQAKKEKSSKGAKPVTLYEEPNMLIKVVRDLFNEDFHRLIVDGKRSFNTVNAYVESM 649

Query: 329  MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P  A  V +Y+         F    I+ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 650  APDLADRVVRYKPKDHGGQDAFAAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 709

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 710  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 769

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499
            KE+L +DR R QV  +++ GL++M+R+R+ + ++E+ +  C +C G G I        + 
Sbjct: 770  KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECEHCHGRGIIIHEYPVDEAE 829

Query: 500  ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
                          +         H      ++++        E +              
Sbjct: 830  DNHSGHHSHGSSKAHKKPEHDPQQHP--AAVVMHEHDDEDERAEKKGQKGRKGRRNATSQ 887

Query: 560  DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
             + +            +       D Q+PS ++ +  V  D+      + +S +   +  
Sbjct: 888  PQKYQ---------KTDAPLYGNEDEQSPSLEELVANVVVDDETGDSEQKDSQKRADNAR 938

Query: 620  VSEESTGVIRKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
               +  G    ++++RRR +  ++        +  A   ++   +Q       D    P+
Sbjct: 939  GHRDDRGRSEGKQKKRRRAQKKSEVSEIEAIAYAAADNAAESDEVQEFNSYVPDGREAPA 998

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                           T     +      P      +      KK     
Sbjct: 999  KEKKRTQRGKKPRRATRTSPATRRAQEQPNKRQQAAEGKAEEKKAEVAD 1047



 Score = 86.6 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    +E +  + GNIYL +V  V PS++AAFVD G  R+G L   EI
Sbjct: 416 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 475


>gi|86605526|ref|YP_474289.1| ribonuclease [Synechococcus sp. JA-3-3Ab]
 gi|86554068|gb|ABC99026.1| ribonuclease, Rne/Rng family [Synechococcus sp. JA-3-3Ab]
          Length = 711

 Score =  223 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 146/561 (26%), Positives = 244/561 (43%), Gaps = 31/561 (5%)

Query: 132 ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY-CIQEVIKNRQILLVQIVKEERG 190
           E    SI +A  ++ S   +      +  P + KR +  I E++  +Q +LVQ++KE  G
Sbjct: 43  ENVLPSIDAAFVNIGSGERNGFIHVSDLGPLRLKRNHASISELVLPQQKVLVQVMKEPTG 102

Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250
           NKG  +T  L+  GRY VL P   KG  +SR+I +  +R  LK     L  P  MG+++R
Sbjct: 103 NKGPRLTGDLAFPGRYLVLRP-YGKGVHLSRRIEDREERNRLKS-LAILIKPPQMGLLVR 160

Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310
           T     ++  +  D E L +LW+++++    +  P L+  + + I+R +RD+Y +D++ I
Sbjct: 161 TEAEGVSEEAMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFIQRVLRDVYSEDVNRI 220

Query: 311 IVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
           +     G +  + +++            V  + +P PI     +   +    +  V LPS
Sbjct: 221 VTDSPAGAKRVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVNAVIRQALRPRVDLPS 280

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            GY++I  TEAL  IDVNSG  T+     +T L TN EAA EIARQLRLR++AG+IVVDF
Sbjct: 281 GGYIVIEPTEALTVIDVNSGSFTQSATSRETVLWTNCEAATEIARQLRLRNIAGVIVVDF 340

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM+ +++   V +   ++L  D+AR QV  +S  GL+E++R+R   S+ E     C  C
Sbjct: 341 IDMDSRRDQLLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQGQSLYEIFGHSCPTC 400

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--- 544
           +G G +                         + V +   V L    +  ++    +    
Sbjct: 401 EGLGIL--------------ARLPGAEPGRLLTVESGLPVTLPTEGEDGSSPSLLQEGDS 446

Query: 545 -RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
            R G+ +       ++     +       A         S  +        E V      
Sbjct: 447 QRAGLRL---GSNGVSRTEGRVSLSRSRTAPEQRPDLEESRIEVGRKRSRDEWVDPRVGQ 503

Query: 604 LPIPKSESLEDIQDNIVSEE----STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            P+ +S   E     +  E+    + G   ++R+  RR     D  + G   D  +    
Sbjct: 504 RPVSRSGEAEGGSLEVPGEDLLQPAGGGAEQKRKESRRPSRGEDGEEQGSHRDQPTAGRS 563

Query: 660 IDDSFDMYMEPSDITNHNLLE 680
                    E         +E
Sbjct: 564 ARAGGVESSESRPARQAITVE 584



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++ID  H    RV  V  +++V+EL           G++Y+  V  V PS+ AAFV
Sbjct: 1  MPRQIVIDEQH----RVAAVFAEDQVQELIV--ASGTYQVGDVYVGIVENVLPSIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G G R+GF+   ++ P
Sbjct: 55 NIGSGERNGFIHVSDLGP 72


>gi|323141407|ref|ZP_08076298.1| S1 RNA binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414156|gb|EFY04984.1| S1 RNA binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 471

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 202/391 (51%), Gaps = 6/391 (1%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q L+VQI K+ RG KG   T  ++L GRY VL+P       ISRKIT+  + +     
Sbjct: 78  EGQSLIVQISKDARGTKGPTATREITLPGRYVVLLPQADYVG-ISRKITDKEE-RERLNT 135

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                 P GMG+++RTA     +  ++RD + L   W  +      + AP L+  E +L 
Sbjct: 136 ICEGVRPVGMGIVVRTAATGVARELLERDVQELAADWKVLAARERVAKAPCLLRRELDLP 195

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            R +RD    +++EI++     Y+  ++ +  +  +    V  Y+    IF        +
Sbjct: 196 IRIVRDYLRPELTEIVIDNLPIYKRVEELLAEMPQAQDIRVTLYQGLEDIFEYHKQGEAV 255

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
             +   +VTLPS GY++I+ TEA+  IDVNSG+ +    +E+T +Q N EAA EIARQLR
Sbjct: 256 AGISDRQVTLPSGGYLVIDHTEAMTVIDVNSGKFSGRENLEETIMQINREAALEIARQLR 315

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LRD+ G+IVVDFIDM    + R +   L+++LK D+   +V  I+   L+E++R++ R +
Sbjct: 316 LRDIGGIIVVDFIDMHTDNHKREIINSLQQALKGDKMHPKVQDITVLNLVEITRKKSRQN 375

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSI-LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           +       C  C G+G ++S+ +++L I  R       + ++ N+++  +  +  +L+  
Sbjct: 376 LSSVLYTPCPVCNGSGRVQSRENLSLEIKRRLRTLLKRRSSSKNLLITANPWLAEWLV-- 433

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565
               +  +E     ++ V     L  + F I
Sbjct: 434 -SKDLRAWERELACTLKVEADASLHVESFMI 463



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  K++I A+  +E R+ +L +  + E   E + ++ + G+++  KV  V   +QAAFVD
Sbjct: 1  MIAKIIISANE-DENRMGLLENGILMEYLVERKEEQHLVGSVFKGKVCNVVRGIQAAFVD 59

Query: 61 YGGNRHGFLPF 71
           G  ++ FL  
Sbjct: 60 IGLEQNAFLYL 70


>gi|306836703|ref|ZP_07469666.1| ribonuclease E [Corynebacterium accolens ATCC 49726]
 gi|304567381|gb|EFM42983.1| ribonuclease E [Corynebacterium accolens ATCC 49726]
          Length = 1230

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 144/592 (24%), Positives = 246/592 (41%), Gaps = 39/592 (6%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G       K   R   ++  +K+   +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 473  GEIDWRKTKLHGRSRKVENTLKSGDQILVQVAKDPIGHKGARLTTRISLAGRYLVYVPG- 531

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++   +   G  VP   G I+RTA  +  +  I  D + L   W+
Sbjct: 532  GRSAGISRKLPAPERKR--LKEILGRVVPGDGGAIIRTAAENVPEEAIATDVQRLHNRWE 589

Query: 274  N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +      +E +     P  +YEE N++ + +RDL+ +D   +IV G++ +     +++ +
Sbjct: 590  DISAQAKKEKSSKGAKPVTLYEEPNMLIKVVRDLFNEDFHRLIVDGKRSFNTVNAYVESM 649

Query: 329  MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P  A  V +Y+         F    I+ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 650  APDLADRVVRYKPKDHGGQDAFAAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 709

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 710  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 769

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499
            KE+L +DR R QV  +++ GL++M+R+R+ + ++E+ +  C +C G G I        + 
Sbjct: 770  KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECEHCHGRGIIIHEYPVDEAE 829

Query: 500  ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
                          +         H   V    +         E +              
Sbjct: 830  DNHSGHHSHGSAKAHKKPEHDPQQHPAAVAMHEHDDEDERA--EEKGQKGRKGRRNATSQ 887

Query: 560  DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
             + +            +       D Q+PS ++ +  V  D+      + +S +   D  
Sbjct: 888  PQKYQ---------KTDAPLYGNEDEQSPSLEELVANVVVDDETGDPEQKDSRKRADDRD 938

Query: 620  VSEESTGVIRKRRRRRRRRRPATDHHDAG-----------VVSDVSSIQNVIDDSFDMYM 668
             +        +   ++++RR A    +               ++   +Q       D   
Sbjct: 939  RAHRDERSRDRGEGKQKKRRRAQKKSEVSEIEAIAYAAADNAAESDEVQEFNSYVPDGRE 998

Query: 669  EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
             P+               T     +      P      +      KK     
Sbjct: 999  APAKEKKRTQRGKKPRRATRTSPATRRAQEQPNKRQQAAEGKAEEKKAEVAD 1050



 Score = 86.2 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    +E +  + GNIYL +V  V PS++AAFVD G  R+G L   EI
Sbjct: 416 TQVGVLEDDLLVEHFVTTEAQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 475



 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 2/145 (1%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            EK    +          S +   + ++  +     E      K+E  +        EE+ 
Sbjct: 1003 EKKRTQRGKKPRRATRTSPATRRAQEQPNKRQQAAEGKAEEKKAEVAD--APEKTYEEAV 1060

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                   RR+RR R  +   +     D +  Q     S        D+      +  + G
Sbjct: 1061 AEFEASPRRKRRTRGNSRSDNRPRPEDFAQPQQAESASSSDKARGDDVAQQEGEQQQSRG 1120

Query: 686  FTENYDVSIPPVSTPEMESSNSSSD 710
                        + P    +   + 
Sbjct: 1121 KARGRGRRRSVRTQPNSRRATVQAS 1145


>gi|329934590|ref|ZP_08284631.1| cytoplasmic axial filament protein CafA and Ribonuclease G
            [Streptomyces griseoaurantiacus M045]
 gi|329305412|gb|EGG49268.1| cytoplasmic axial filament protein CafA and Ribonuclease G
            [Streptomyces griseoaurantiacus M045]
          Length = 1455

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 142/554 (25%), Positives = 250/554 (45%), Gaps = 11/554 (1%)

Query: 166  RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
                I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+ +
Sbjct: 771  GPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLPD 829

Query: 226  PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284
                +   +      VP   GVI+RTA    ++ E++RD E L   W+ +++ + N   A
Sbjct: 830  TERAR--LKSILKKVVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNGGTA 887

Query: 285  PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
            P L+Y E ++  R +RD++ +D S+++VSG++ +     ++  + P  A  + ++     
Sbjct: 888  PTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAPRLSRWTSETD 947

Query: 345  IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403
            +F    I+ QL      +V LPS G ++I++TEA+V IDVN+G+ T +   +E+T  + N
Sbjct: 948  VFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNN 1007

Query: 404  LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
            LEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ G
Sbjct: 1008 LEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 1067

Query: 464  LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS--SVALSILRSVEEYLLQYTAHNIIV 521
            L++M+R+R+   +LES ++ C +C G G I      S +       +         +   
Sbjct: 1068 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSASGGGGGGGKRRKRGRGGADQPH 1127

Query: 522  HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI-EKGSPVQALVNTGHK 580
               +       +       E  A    +       E       + E  +P + L ++  +
Sbjct: 1128 EHETHETHETHDTHETHEHETHAAAVATAVEEAEPERRQPAAEVPEAFAPDEELYSSVAE 1187

Query: 581  VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
              + +      +         A  P      +   Q+  V EE+   +R       +  P
Sbjct: 1188 AEAAATRGRSRRRATRRSSAPAGAPKRAEAEVPTAQEVTVEEETARPVRPEPAEAVQAEP 1247

Query: 641  ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
            A          + ++       +    +           E      T       P  +  
Sbjct: 1248 AAAEDPVVEAPEEAAPAAPKGRTRRRAVRKVSAPVTAPEE---AVVTVAEPAPAPVEAPE 1304

Query: 701  EMESSNSSSDPIVK 714
            +     +++ P  +
Sbjct: 1305 QAAPEQTAAQPAEQ 1318



 Score = 92.0 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 690 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIG 749

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 750 KGRNAVLYAGEV 761


>gi|318060733|ref|ZP_07979456.1| ribonuclease E [Streptomyces sp. SA3_actG]
          Length = 881

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
           +     I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+
Sbjct: 141 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 199

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ A    
Sbjct: 200 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 257

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+Y E ++  R +RD++ +D ++++VSG++ +     ++  + P     + ++    
Sbjct: 258 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 317

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
             F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  + 
Sbjct: 318 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 377

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 378 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 437

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 438 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 472



 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D+ + E            GN+YL KV  V PS++AAF+D G
Sbjct: 63  ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 122

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 123 KGRNAVLYAGEV 134


>gi|50954527|ref|YP_061815.1| ribonuclease G [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951009|gb|AAT88710.1| ribonuclease G [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 847

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 122/476 (25%), Positives = 214/476 (44%), Gaps = 23/476 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+  +K    +LVQ+ K+  G+KGA +T+ +SL G Y V +PN 
Sbjct: 319 GEVDWDAVETGNQPRRIELALKPGDRVLVQVTKDPVGHKGARLTSQISLPGHYLVYVPNG 378

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       +P   GVI+RTA    T+ ++  D   L   W 
Sbjct: 379 SMNG-ISRKLPDTERSRLKK--ILKEVLPESAGVIVRTAAEGATEEQLTLDVTRLTAQWA 435

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           ++        AP L++ E +L+ + IRD++ +D  +++++G+   +  + +++ + P   
Sbjct: 436 DISRQNETQQAPALLHSEPDLLIKIIRDVFNEDFQKLVIAGDDARQTIESYLRQVAPDLL 495

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             V  Y      F    I  Q++   + +V LPS G ++I++TEA+  +DVN+G+     
Sbjct: 496 DRVEAYTGERDAFDEHRITEQIEKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSG 555

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +DR 
Sbjct: 556 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRT 615

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS-----VALSILRSV 507
           + QV  +++ GL++M+R+++   +LE+ ++ C  C G G I                   
Sbjct: 616 KHQVAEVTSLGLVQMTRKKLSLGLLETFSEACEVCAGRGVIVHHDPVVKSRQPQQPQNER 675

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
                   + +            + +  +  + +  A                     E 
Sbjct: 676 RRGRGGNGSGSSAPAHSGSGTHAITDDAKNALAQIAA------------STIHAHAVDEG 723

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             PV+   +       ++ AP   +      Q +         S ED+      + 
Sbjct: 724 AKPVEGAASVAEAQ--ETPAPKKRRRKGKSAQRDEQKTAAAGTSGEDVPAAAGPDR 777



 Score = 87.7 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY-- 61
           + ++  S     ++ VL D  + E       +  + GN+YL +V  V PS++AAFVD   
Sbjct: 249 RQMVVRSKGGRIQIGVLEDKVLVEHYVARSQEASLIGNVYLGRVQNVLPSMEAAFVDIGR 308

Query: 62  GGNRHGFLPFLEIHPD 77
           G  R+  L   E+  D
Sbjct: 309 GRGRNAVLYSGEVDWD 324


>gi|119962820|ref|YP_948103.1| ribonuclease Rne/Rng family protein [Arthrobacter aurescens TC1]
 gi|119949679|gb|ABM08590.1| putative ribonuclease, Rne/Rng family domain protein [Arthrobacter
           aurescens TC1]
          Length = 1109

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 132/561 (23%), Positives = 245/561 (43%), Gaps = 7/561 (1%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DRQ ++++ +            +    V+     SL     +               +  
Sbjct: 404 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 463

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 464 RGRNAVLYAGEVNWDAVNLEGQPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPG 523

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RY V +P  S    ISRK+ +    +  +       +P   GVI+RTA    ++ E+  D
Sbjct: 524 RYLVYVPGGSMTG-ISRKLPDVERNRLKR--ILKDRLPENAGVIVRTAAEGASEEELTHD 580

Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              L   W+ +   A ++      L+Y E +L  + +RD++ +D S++IVSG+  +   +
Sbjct: 581 INRLRAQWEGIEGQASSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGDDAWDTIE 640

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            ++  + P     + ++     IF    I+ Q+    + +V LPS G ++I++TEA+  +
Sbjct: 641 AYVTYVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVV 700

Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           DVN+G+ T     +E+T  + NLEAAEE+ RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 701 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 760

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++ E L +DR + QV  +++ GL++M+R+R+ + +LE   + C +C G G +     V  
Sbjct: 761 RMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEHCAGRGVVTHDEPVEH 820

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
                V     +  A        ++            I E  A+   + +         +
Sbjct: 821 RRANVVAAEHHRPHAEAQQPAARTERKRRRGKGGGQAIAEAPAQVHTTTSAPAAPSAPVE 880

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                + +  +A       + + + A     +     +++A     +   +        S
Sbjct: 881 AQDPARQAKAEATRAALATIAAAAHAAHLHDDEVHRAEEQARAAGHEPA-VSPASGTAAS 939

Query: 622 EESTGVIRKRRRRRRRRRPAT 642
            E+    R+  +R    + A 
Sbjct: 940 GEAGATAREAEKREAAVQEAR 960



 Score = 93.9 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           + +I     +  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G 
Sbjct: 405 RQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 464

Query: 64  NRHGFLPFLEIHPD 77
            R+  L   E++ D
Sbjct: 465 GRNAVLYAGEVNWD 478


>gi|319779488|ref|YP_004130401.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Taylorella equigenitalis MCE9]
 gi|317109512|gb|ADU92258.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Taylorella equigenitalis MCE9]
          Length = 420

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 2/399 (0%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+++    Q LLVQ++K    +KGA ++  +++AGR  V MP       IS++I    
Sbjct: 20  PKIEKLFFEGQTLLVQVIKNPVNDKGARLSNQINIAGRIMVYMPFNEHIG-ISQRIEIEE 78

Query: 228 DRKNLKEIARGLEVPAGMG-VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
           +R+ L++  + L     +G  I+RT   +  + ++KRD +YL   W+ +++ A NS AP 
Sbjct: 79  EREKLRDWVQNLRGSDDVGGYIIRTFAETCEESDLKRDMDYLRLQWEAIQKRAKNSKAPK 138

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           LVYEE +L  R +RD    + + I +  E      K +     P+    +  Y+   PIF
Sbjct: 139 LVYEELSLTHRVLRDFANANTTNIEIDSEPELERMKAWSTEYTPAVTEKLNLYKASRPIF 198

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
             + IE  ++      V LPS GY+I + TEAL SIDVN+G         DT L+TNLEA
Sbjct: 199 DLNNIEEDIEIALSQRVNLPSGGYLIFDSTEALTSIDVNTGSFLGSRNFNDTILKTNLEA 258

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           + EIARQLRLR++ G+I++DFIDM +  +   V   LK +L +DR R  V   S FGL+E
Sbjct: 259 SLEIARQLRLRNVGGIIIIDFIDMVDNGHKEQVMCSLKNALSRDRVRTTVNDFSCFGLVE 318

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R  SS+     + C  C+G G +++  ++   I+R ++     +      +   S 
Sbjct: 319 MTRKRAHSSLASMLMEKCPTCEGRGSVKTAKTIVYQIMREIQREAKLFNPTEFRLILSSQ 378

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+   L+++           G  I++ +    + +++ I
Sbjct: 379 VLDLFLDEESQYFTALSDAIGKPISLEVDDHYSQEMYDI 417


>gi|145595994|ref|YP_001160291.1| ribonuclease [Salinispora tropica CNB-440]
 gi|145305331|gb|ABP55913.1| ribonuclease, Rne/Rng family [Salinispora tropica CNB-440]
          Length = 1024

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 131/462 (28%), Positives = 227/462 (49%), Gaps = 12/462 (2%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++ +K+   +LVQ+ K+  G+KGA +T++++L+GR+ V +P  
Sbjct: 547  GEVNWDATGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPG- 605

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   ++ L++  + L    G GVI+RTA    T+ E+ RD + L   W+
Sbjct: 606  GNASGISRKLPDNERKR-LRDALKKLVPE-GAGVIVRTAAEGATEDELARDVKRLQAQWE 663

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +++  A    AP L+YEE +L+ R +RDL+ +D  E+++ GE  Y   + ++  + P   
Sbjct: 664  DIQAKAGRGGAPVLLYEEPDLVIRVVRDLFNEDFRELMIEGEGAYDLVESYLSHVSPDLV 723

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              +R++     +F    I+ Q+      +V LPS G+++I++TEA+  +DVN+G+ T   
Sbjct: 724  ARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 783

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V ++L E L +DR 
Sbjct: 784  GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 843

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
            + QV  I++ GL++M+R+RI + +LE+ ++ C  CKG G I     V            +
Sbjct: 844  KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGLILHTEPVPEKPRAGGTGEKV 903

Query: 513  QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG--------IELADKLFY 564
            +  A      +              T+VE E                           + 
Sbjct: 904  KAVASAEAGGSSRRRARKGAVAAERTVVESEEAQDAGTTDTPEVTATTPGADYYDTMGYD 963

Query: 565  IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
            + +        +       D+   +   + + V  D+     
Sbjct: 964  LSRYEVETPAPSVVASQSGDTARLAAPDDPDAVGGDDGEESE 1005



 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E          + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 490 TQIAVLEDGVLVEHYVTRNSAVTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 549

Query: 75  HPD 77
           + D
Sbjct: 550 NWD 552


>gi|330937967|gb|EGH41754.1| ribonuclease G [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 455

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 5/373 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++I+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           +M+R+R R S+ +   + C  C G G +++  ++   I R +      Y A    V  + 
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442

Query: 526 DVVLYLLNQKRAT 538
            VV  LL+++   
Sbjct: 443 RVVDRLLDEESGN 455



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|269125790|ref|YP_003299160.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183]
 gi|268310748|gb|ACY97122.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183]
          Length = 1041

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 127/490 (25%), Positives = 229/490 (46%), Gaps = 26/490 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    DV     +   I++ +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 577  GEVNWDVAGLVGQPRRIEQALKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDG 636

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            S    ISRK+ +    +   +      +P   GVI+RTA    T+ E+  D   L   W+
Sbjct: 637  SMTG-ISRKLPDKERSR--LKQVLKKIMPDNAGVIVRTAAEGATEEELAGDIARLSAQWE 693

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++ + A  + AP L++ E +L  R +RD++ +D S+++VSG+  +    +++  + P  A
Sbjct: 694  HIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMVSEYVGYVAPHLA 753

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              + ++E    +     I+ Q+    + +V LPS G ++I++TEA+  +DVN+G+ T + 
Sbjct: 754  ERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQG 813

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 814  GNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLLECLSRDRT 873

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
            + QV  +++ GL++M+R+R+   +LE+ ++ C  C G G      +  +           
Sbjct: 874  KHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRGI--HIQTTPVEHGSDKSGGRR 931

Query: 513  QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
            +    ++       +  +   ++ A   E E +                       +   
Sbjct: 932  RKRKGDVERAVEEKLAKHEAEKRAAAKREQETQ--------------------AASAEPA 971

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                   +  + + A         V   EA    P  E  +    N          + + 
Sbjct: 972  QPAGEPAQEPAQTVAEVPQAAPAAVETAEAETAEPPVEVPDAAAGNGRRRVRRSRAKTKD 1031

Query: 633  RRRRRRRPAT 642
            +        +
Sbjct: 1032 KAEVAGSAES 1041



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D  + E   +    +   GN+YL KV  V PS++AAFVD G
Sbjct: 508 ERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDIG 567

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 568 KGRNAVLYAGEVNWD 582


>gi|284030265|ref|YP_003380196.1| ribonuclease, Rne/Rng family [Kribbella flavida DSM 17836]
 gi|283809558|gb|ADB31397.1| ribonuclease, Rne/Rng family [Kribbella flavida DSM 17836]
          Length = 1119

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 142/589 (24%), Positives = 250/589 (42%), Gaps = 19/589 (3%)

Query: 102  AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPED 159
            AV++D    +  +  +  +  +  +     +    S+ +A  D+      V   G    +
Sbjct: 544  AVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVDWN 603

Query: 160  VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
                      I+ V+K+ Q +LVQ+ K+  G+KGA +T  +SL GRY V +P    G  I
Sbjct: 604  TLGGGNGPRKIESVLKSGQAVLVQVTKDPIGHKGARLTNQISLPGRYVVYVPRGGNGG-I 662

Query: 220  SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
            SRK+ +    +   +      VP   GVI+RTA    T+ E+  D   L   W+++ + +
Sbjct: 663  SRKLPDTERSR--LKGILKDIVPDEAGVIVRTAAEGATEEELTADVSRLQAYWEDIDKKS 720

Query: 280  LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             +  AP L++ E +L+ R +RDL+ +D +++++SG+  + +  +++  + P  A  V ++
Sbjct: 721  KSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQVSEYVSAVAPHLAERVAKW 780

Query: 340  EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDT 398
                 +F    I+ Q+      +V LPS G +II++TEA+  +DVN+G+ T     +E+T
Sbjct: 781  TGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGGNLEET 840

Query: 399  ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
              + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR + QV  
Sbjct: 841  VTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAE 900

Query: 459  ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            +++ GL++M+R+RI + +LE+  + C +C G G I                   +  A  
Sbjct: 901  VTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLILHDEPKESR-----RRQDGRGGAEQ 955

Query: 519  IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
               H H +       +K +     + R                   ++  S     +   
Sbjct: 956  KNGHDHKNGTGDGEGKKGSRRNRGKGR-------RDDEHTETPE-PVQHNSDAAQRLAQI 1007

Query: 579  HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                 +  A +     E   +     P  +            S  S              
Sbjct: 1008 AAATVNGNAGNGHGTSEPATEPATEAPAAEDRGNGPADRTDGSAGSGAEAGADAGTGEAT 1067

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
               TD  +    S  S  +           +       +  E      +
Sbjct: 1068 AEPTDAAEPNGSSRSSRRRRSSRSRSKSAGDEGGSAPDSGGEAPVELVS 1116



 Score = 90.4 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           M+I A   + T++ V  DN + E     E +  + GN+YL +V  V PS++AAF+D G  
Sbjct: 532 MVIRA-RGDLTQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIGKG 590

Query: 65  RHGFLPFLEI 74
           R+  L   E+
Sbjct: 591 RNAVLYAGEV 600


>gi|302560669|ref|ZP_07313011.1| ribonuclease, Rne/Rng family domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302478287|gb|EFL41380.1| ribonuclease, Rne/Rng family domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 556

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 121/347 (34%), Positives = 201/347 (57%), Gaps = 6/347 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 180 GEVNFEALGMGHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 239

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L   W+
Sbjct: 240 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 296

Query: 274 NVRELALNS--VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            +++ + N    AP L+Y E ++  R +RD++ +D S+++VSG++ +     ++  + P 
Sbjct: 297 EIKKKSKNGAGSAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWETVHGYVSHVAPD 356

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
            A  + ++     +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T 
Sbjct: 357 LAERLSRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGKFTG 416

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           +   +E+T  + NLEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +D
Sbjct: 417 QGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRD 476

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           R + QV  +++ GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 477 RTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 523



 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   H + T++ VL D  + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 111 ERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 170

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 171 KGRNAVLYAGEV 182


>gi|295838917|ref|ZP_06825850.1| ribonuclease, Rne/Rng family domain-containing protein
           [Streptomyces sp. SPB74]
 gi|295827249|gb|EDY42405.2| ribonuclease, Rne/Rng family domain-containing protein
           [Streptomyces sp. SPB74]
          Length = 713

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 118/335 (35%), Positives = 198/335 (59%), Gaps = 4/335 (1%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
                 I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+
Sbjct: 235 HHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 293

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++R+ A    
Sbjct: 294 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIRKKAKTGN 351

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+Y E ++  R +RD++ +D ++++VSG++ +     ++  + P     + ++    
Sbjct: 352 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETVHGYVSHVAPDLVGRLSRWTSEV 411

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
            +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  + 
Sbjct: 412 DVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 471

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 472 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 531

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 532 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 566



 Score = 92.0 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D+ + E            GN+YL KV  V PS++AAF+D G
Sbjct: 157 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 216

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 217 KGRNAVLYAGEV 228


>gi|304382112|ref|ZP_07364623.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973]
 gi|304336710|gb|EFM02935.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973]
          Length = 524

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 136/502 (27%), Positives = 240/502 (47%), Gaps = 20/502 (3%)

Query: 81  IPFSDRQ---ALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVA 124
           I   D++   ALL++  + +  +E  +   + G++ +               D   E  A
Sbjct: 7   IDVRDKEISIALLEDKRLVEYQNEPRSASFSVGNIYVAKVKKLMPGLNASFVDVGYERDA 66

Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184
            +       +  S       V ++ + +   S        K+   + + +   Q +LVQ+
Sbjct: 67  FLHYLDLGGQFNSYGKYLKQVEADRKKLYPFSKATRLPDLKKDGSVTQTLTIGQEVLVQV 126

Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244
           VKE    KG  +T  LS AGRY VL+P   K    S+  +     + LK++   ++    
Sbjct: 127 VKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSSKIKSGEERAR-LKQLIHSIKPK-N 184

Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLY 303
            G+I+RT    R   E+  + + L++ WD+           P L++EE       +RDL+
Sbjct: 185 FGIIVRTVAEGRRVAELDTELKVLLKRWDDAIAKVQKTQKRPQLIFEETGRAVAMLRDLF 244

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
                 I ++ E+ + E K ++ L+ P  A IV+QY    PIF    I  Q+ S     V
Sbjct: 245 DPTYENIYINNEEVFNEVKQYVTLIAPEKAAIVKQYTGNVPIFDNFNITKQIKSGFGKAV 304

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGL 422
                 Y+II  TEAL  +DVNSG  TR    ++  AL+ NL AA+E+ARQLRLRD+ G+
Sbjct: 305 NYKHGAYLIIEHTEALHVVDVNSGNRTRSENGQEANALEVNLGAADELARQLRLRDMGGI 364

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           IVVDFIDM   ++ + + +++ ++++KDRAR  +  +S FGL++++RQR+R ++  +  +
Sbjct: 365 IVVDFIDMNVAEDRQLLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDVNVDE 424

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
            C  C G G I+S       +   ++  + +       +H H  V  Y+     +   ++
Sbjct: 425 TCPTCFGKGKIKSSFLFTDQLEGKIDHLVNKIGITKFYLHVHPYVAAYINQGIVSLKRKW 484

Query: 543 EARFGVSINVVIGIELADKLFY 564
           + R+G  ++++   +LA   + 
Sbjct: 485 QLRYGWGVHIIPSQKLAFLQYE 506



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + +L D R+ E   E        GNIY+AKV ++ P L A+FVD
Sbjct: 1   MTSEVVIDVRD-KEISIALLEDKRLVEYQNEPRSASFSVGNIYVAKVKKLMPGLNASFVD 59

Query: 61  YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104
            G  R  FL +L++         Y +   +DR+ L   S   +       
Sbjct: 60  VGYERDAFLHYLDLGGQFNSYGKYLKQVEADRKKLYPFSKATRLPDLKKD 109


>gi|323345438|ref|ZP_08085661.1| ribonuclease G [Prevotella oralis ATCC 33269]
 gi|323093552|gb|EFZ36130.1| ribonuclease G [Prevotella oralis ATCC 33269]
          Length = 524

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 120/401 (29%), Positives = 207/401 (51%), Gaps = 4/401 (0%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   +Q+ +   Q +LVQIVKE    KG  +T  LS AGR+ VL+P   K    S+  + 
Sbjct: 108 KSGSVQQTLTVGQEVLVQIVKEPISTKGPRLTGELSFAGRFLVLIPFGDKVSVSSKIKSG 167

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVA 284
               +   +       P   GVI+RT    +   E+  + + L + W++           
Sbjct: 168 EERAR--LKQLIHSVRPKNCGVIVRTVAEGKRVAELDAELKVLAKRWEDALVKVQKTQKR 225

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P LV+EE       IRD++  +   I V+ +  + E KD++ L+ P+ A IV+ Y    P
Sbjct: 226 PQLVFEEKGRAIALIRDIFNPNFENIYVNDKDAFNEIKDYVTLIAPAKAGIVKMYTGKVP 285

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTN 403
           IF    +  Q+ +     V      Y+II  TEAL  +DVNSG R+  E   E  AL+ N
Sbjct: 286 IFDNFNVTKQIKASFGKTVNYKHGSYLIIEHTEALHVVDVNSGNRARNEKGQEANALEVN 345

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           L AA+E+ARQLRLRD+ G+IVVDFIDM   ++ + + +++ +++++DRAR  +  +S FG
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQQDRARHNILPLSKFG 405

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++++RQR+R ++  +  + C  C G+G IRS       +   +++ + +       +H 
Sbjct: 406 LMQITRQRVRPAMDVNVEENCPTCFGSGKIRSSILFTERLESKIDQLVNKIGVKKFYLHV 465

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           H  V  Y+     +   +++ ++G  ++++   +LA   + 
Sbjct: 466 HPYVAAYINQGVFSLKRKWQLKYGWGVHIISSQKLAFLQYE 506



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M ++++ID    +E    +L D R+ E   E +      GNIY+AK+ ++ P L A FVD
Sbjct: 1  MTSEVVIDV-QEKEISTALLEDKRLVEYQNEPKSASFSVGNIYIAKIKKLMPGLNACFVD 59

Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89
           G  R  FL +L++         Y +   SDR+ L
Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKRL 94


>gi|170782192|ref|YP_001710525.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156761|emb|CAQ01923.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 1015

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 239/585 (40%), Gaps = 60/585 (10%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+  +K    +LVQ+ K+  G+KGA +T+ +SL GRY V +PN S    ISRK+ +  
Sbjct: 442 RRIEVALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNG-ISRKLPDTE 500

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
             + LK+  + +     +GVI+RTA    T+ ++K D E L   W  +      + AP L
Sbjct: 501 RAR-LKKTLKEVLPE-NVGVIVRTAAEGATEEQLKLDVERLTSQWAEISRQVEKAQAPAL 558

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           ++ E +L+ + IRD++ +D  E+++ G       + +++ + P     V+ Y      F 
Sbjct: 559 LHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQAYSGEKDSFD 618

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEA 406
              +  Q++     +V LPS G ++I++TEA+  +DVN+G+       +E+T  + NLEA
Sbjct: 619 HYRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEA 678

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E L +DR + QV  +++ GL++
Sbjct: 679 AEEIVRQMRLRDIGGIIVVDFIDMVLETNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQ 738

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS------------------------ 502
           M+R+++   +LES ++ C  C G G I     +                           
Sbjct: 739 MTRKKLGLGLLESFSENCETCAGRGIIIHHDPLMAHKQTPQEPVQGQGRRRGGKGQQEHG 798

Query: 503 ---ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
                 +                T +     +    R+ + +                + 
Sbjct: 799 TGGGNGNGGGRGNGGGQAQQQQRTPAASTHSITEDARSALAKI-----------ATSTIQ 847

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                I++   V    +   +  + ++     +         +     ++ S+       
Sbjct: 848 TVNEAIDRVEDVVRTPDETTEAAAPAEGAPVAEQPRGDRPRRSRGGRGRASSVVADATEQ 907

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              ++                      +    D +     +++S    +EP +      +
Sbjct: 908 QPPQAPVAE----------------DPSAPAEDPTPADAPVEESARSTLEPREAIRLEPV 951

Query: 680 E--NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +  +            +      ++  S   + P  K+    + R
Sbjct: 952 QILDIPVASARTAPRRVSSADAEQLLGSVLDALPQPKEPGQGRSR 996



 Score = 92.0 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           I  S   + ++ VL D  + E       +  + GN+YL +V  V PS++AAF+D G  R+
Sbjct: 359 IVRSRDGKIQIGVLEDQVLVEHYVARADEASLIGNVYLGRVQNVLPSMEAAFIDIGRGRN 418

Query: 67  GFLPFLEI 74
             L   E+
Sbjct: 419 AVLYSGEV 426


>gi|311896012|dbj|BAJ28420.1| putative ribonuclease [Kitasatospora setae KM-6054]
          Length = 1238

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 4/335 (1%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
                 I+ V+K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+
Sbjct: 604 HGGSRRIESVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPEGSMTG-ISRKL 662

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
                 +   +      VP   GVI+RTA    ++ E+ RD + L + W+ +++ A    
Sbjct: 663 PENERTR--LKQILKKIVPDDAGVIVRTAAEGASEEELTRDVQRLQQQWEEIQKKAATGN 720

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+Y E ++  R +RD++ +D +++IVSG   +    D++  + P     ++++    
Sbjct: 721 APALLYGEPDMTVRVVRDIFNEDFTKVIVSGTDAWNTIHDYVSNVAPDLTERLQRWTSDV 780

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
            +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+   +   +E+T  + 
Sbjct: 781 DVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGKFVGQGGNLEETVTRN 840

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           N+EAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 841 NIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 900

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 901 GLVQMTRKRVGQGLLESFSEPCVHCNGRGVIVHMD 935



 Score = 92.0 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     E      GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 537 TQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV 596


>gi|311743037|ref|ZP_07716845.1| possible ribonuclease G [Aeromicrobium marinum DSM 15272]
 gi|311313717|gb|EFQ83626.1| possible ribonuclease G [Aeromicrobium marinum DSM 15272]
          Length = 865

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 129/429 (30%), Positives = 216/429 (50%), Gaps = 27/429 (6%)

Query: 75  HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETE 134
           H DY QI   +   +L E  +A+    ++  +V  G V             I        
Sbjct: 310 HDDYTQIAVLE-DKVLVEHYVARESQTSLIGNVYLGKVQNVLPSMEAAFIDIGAG----- 363

Query: 135 EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194
                            +  G  +       +Q  I++V+ + Q +LVQ+ K+  G KGA
Sbjct: 364 -------------RNAVIYAGEIDWSGLGNGKQRKIEDVLTSGQTVLVQVSKDPVGQKGA 410

Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254
            +T+ +SL GR+ V +P   +   ISRK+ +    +   +      +PA  GVI+RTA  
Sbjct: 411 RLTSQVSLPGRFLVYVPG-GQTNGISRKLPDTERTR--LKTLLKEVLPADAGVIVRTAAE 467

Query: 255 SRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314
             ++ ++ RD   L   W+++        AP L+Y E +L+ + +RDL+ +D + ++V G
Sbjct: 468 GASEDQLTRDVASLKARWEDIERKVEAGKAPELLYSEPDLMIKVVRDLFNEDFTSLVVEG 527

Query: 315 EKGYREAKDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGY 370
              +     +++ + P  A  + ++E         F    IE Q+      +V LPS G 
Sbjct: 528 RDAWDNISGYVQHVAPDLAERLERWEPEEHDGRHAFAGFRIEEQIHKALDRKVWLPSGGS 587

Query: 371 VIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429
           ++I++TEA+  +DVN+G+ T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFID
Sbjct: 588 LVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFID 647

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489
           M  + N   V ++L E L +DR R QV  +++ GL++M+R+RI + ++ES +  C +CKG
Sbjct: 648 MVLESNRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGLVESFSTDCEHCKG 707

Query: 490 AGYIRSQSS 498
            G +     
Sbjct: 708 RGIVIQAEP 716



 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 11  HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
           H + T++ VL D  + E     E +  + GN+YL KV  V PS++AAF+D G  R+  + 
Sbjct: 310 HDDYTQIAVLEDKVLVEHYVARESQTSLIGNVYLGKVQNVLPSMEAAFIDIGAGRNAVIY 369

Query: 71  FLEI 74
             EI
Sbjct: 370 AGEI 373


>gi|297616890|ref|YP_003702049.1| ribonuclease, Rne/Rng family [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144727|gb|ADI01484.1| ribonuclease, Rne/Rng family [Syntrophothermus lipocalidus DSM
           12680]
          Length = 474

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 126/406 (31%), Positives = 222/406 (54%), Gaps = 6/406 (1%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
             ++F+ +  +  ++K  Q +LVQ+ KE    KGA VT  +S+ GR+ VL+PN  +G ++
Sbjct: 72  ENERFRNRGSVFSMLKKGQTVLVQVKKEAVAEKGARVTQDISIPGRHLVLLPNQ-EGVSV 130

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           SR+IT    R++LK +    + P G+GVI RT  A     EI  +   L+ LW+ ++   
Sbjct: 131 SRRITCDSRRRDLKRLLEEAK-PQGVGVIARTNSAEAPNEEILAELRELLDLWERIKRSY 189

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
            ++  P ++YE+  +I+ ++R+    +   ++++  +     ++ ++   P +A ++R  
Sbjct: 190 ESTRGPGVIYEDLGIIECSLREYLDVNTKAVLINHYEEKLRLEELLQDKHPDFAFLLRYE 249

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           E     F + G+E +L       V L   GY++I++TEAL  IDVNSG+ T     E+TA
Sbjct: 250 EGDL--FDKYGLEKELKHALGRRVWLRHGGYLVIDETEALTVIDVNSGKYTSNSEFEETA 307

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+TNL+AA EI RQLRLR + G+I++DFIDM++  +   V  +L++ L KD+A  +V   
Sbjct: 308 LRTNLDAAAEIPRQLRLRRIGGIILIDFIDMKKPGHQEEVLNRLQQELSKDKAHTRVMGF 367

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           +  G+LEM+RQ+ R  + +  T+ C +C+  G + +  SVA  I R +        A+ I
Sbjct: 368 TRLGILEMTRQKSRHRLRQLFTEGCRWCRSEGRLPAVGSVANEIRRKLVSMDYIL-ANTI 426

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +   + +V+  L    R +++  E R G  I +          + +
Sbjct: 427 LCQANPEVIRELSG-DRNSMIYIEERLGKRIVLEEEPGYDVATYKL 471



 Score = 78.9 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          +I   +  ETRV +  D ++ E+ +E+   K   G IY   V  V   L  AFVD G NR
Sbjct: 7  IIIEIYPWETRVGITEDGKLVEVFWENPESK--VGKIYKGIVKDVVRGLSCAFVDLGFNR 64

Query: 66 HGFLP 70
            FL 
Sbjct: 65 SAFLY 69


>gi|238898798|ref|YP_002924480.1| RNase G (ribonuclease G) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466558|gb|ACQ68332.1| RNase G (ribonuclease G) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 495

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 118/411 (28%), Positives = 214/411 (52%), Gaps = 8/411 (1%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+   ++  I E+I   Q ++VQ++K+  G+KGA +TT+++LA RY VL    +    I
Sbjct: 80  PPENEDQRQDIAELIHLGQNVMVQVIKDPLGSKGARLTTHITLASRYLVLT--MTPEVAI 137

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           S+++ N  +R+ LK I          G I+RTA     +  +  D  +L  LW N+    
Sbjct: 138 SQRLENEQERERLKNIVSSYCDKKN-GFIVRTAAEGMDEKALASDAAFLKSLWANIIAGK 196

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLY-----CKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334
             + + +++Y E  L KR +RD        +   +   +       +++++  ++P    
Sbjct: 197 TQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQTYNSLKAFSEEYIPEMLPKLEH 256

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
              + ++   +F    +E ++ SL   +V L S G +II QTEA+ +ID+N+        
Sbjct: 257 YPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLIIEQTEAMTTIDINTAGFVGYKN 316

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +E+T   TN+EA   IARQLRLR+L G+I++DFIDM+ +++ ++V   LK++L +DR + 
Sbjct: 317 LEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKNEEHKKNVLSSLKKALNQDRVKT 376

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514
            VG  S  GL+E++R+R   ++ +     C  C+G G+ +S  +V   I R + +     
Sbjct: 377 TVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGWFKSPETVCHEIFRKMIQLHHSS 436

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +  ++V+  + V  +LL+QK  T+ + +   G  I + I        F+I
Sbjct: 437 DSQQMLVYVSNRVSDFLLHQKAETLAKIQCLLGKKIQIKIDPLYTQNQFHI 487



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK--QIKGNIYLAKVTRVEPSLQAAF 58
          M +++LI+ +   ETRV  + DN ++E+  E E++    + GNIY  +VTR+ P +QAAF
Sbjct: 1  MTSELLINVT-PFETRVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAF 59

Query: 59 VDYGGNRHGFLPFLEIHP 76
          +D    +  FL   +I  
Sbjct: 60 IDIQLEKAAFLHASDILS 77


>gi|251798390|ref|YP_003013121.1| ribonuclease, Rne/Rng family [Paenibacillus sp. JDR-2]
 gi|247546016|gb|ACT03035.1| ribonuclease, Rne/Rng family [Paenibacillus sp. JDR-2]
          Length = 411

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 109/344 (31%), Positives = 183/344 (53%), Gaps = 5/344 (1%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +       + K+ + +  I E++K  Q L+VQ++KE  G+KGA VTT+ +L GR+ V MP
Sbjct: 64  IDDLLHPHLEKQPEHKPSITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWLVYMP 123

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    + +      +    +          G+I+RTA     +  +  D + L +L
Sbjct: 124 IAGYIGVSKKIMAESERSRIR--MIGERLRQGEEGIIMRTAAEGECEESLGADVDQLRQL 181

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W +V + A ++ AP  ++ E  L++RA+RD    D+ E+ +     Y EA   +K + P 
Sbjct: 182 WTSVLQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEMTPH 241

Query: 332 YA---RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            A   ++    ++   +F R G+  Q+++   + + L S G ++ ++TEAL  IDVN+ +
Sbjct: 242 LAGRLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVNTAK 301

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
                 +EDT  +TN+EAA+EIAR LR+RD+ G+IV+DFIDME + N   V  +L +  K
Sbjct: 302 YIGATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSDWAK 361

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           KDR +  V   +  GLLE++R++ R +     T+ C  C G G 
Sbjct: 362 KDRTKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTGK 405



 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
          H E  +  VL D R+ +   E      + GN+Y  +V  V P +QAAFVD G  ++ FL 
Sbjct: 4  HGELLQTAVLMDGRLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLY 63

Query: 71 FLE-IHPDYYQIP 82
            + +HP   + P
Sbjct: 64 IDDLLHPHLEKQP 76


>gi|238060599|ref|ZP_04605308.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149]
 gi|237882410|gb|EEP71238.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149]
          Length = 1086

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 209/350 (59%), Gaps = 4/350 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++ +++   +LVQ+ K+  G+KGA +T++++L+GR+ V +PN 
Sbjct: 605 GEVNWDTTGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPN- 663

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++ L+++ + L    G GVI+RTA    ++ E+ RD + L   W+
Sbjct: 664 GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 721

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           +++    +  AP L+YEE +L+ R +RDL+ +D  E+++ G++ Y   + ++  + P   
Sbjct: 722 DIQAKVASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMVESYLSHVSPDLV 781

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             VR++     +F    I+ Q+      +V LPS G+++I++TEA+  +DVN+G+ T   
Sbjct: 782 DRVRRHVGTSDVFATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 841

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V ++L E L +DR 
Sbjct: 842 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 901

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           + QV  I++ GL++M+R+RI + +LE+ ++ C  CKG G +     V   
Sbjct: 902 KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGVVIHTEPVPEK 951



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E          + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 548 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 607

Query: 75  HPD 77
           + D
Sbjct: 608 NWD 610


>gi|255326316|ref|ZP_05367401.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296]
 gi|255296610|gb|EET75942.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296]
          Length = 1148

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 145/642 (22%), Positives = 257/642 (40%), Gaps = 44/642 (6%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DRQ L+++ +            +    V+     SL     +               +  
Sbjct: 272 DRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 331

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    DV         I+  +K    +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 332 RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 391

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ V +P  S    ISRK+ +    +  K +   L  P G GVI+RTA    ++ E+  D
Sbjct: 392 RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PEGAGVIVRTAAEGASEEELTHD 448

Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              L   W+ ++E A +       ++Y+E +L+ + +RD++ +D + +IV GE  +   +
Sbjct: 449 INRLRAQWEEIQEKANSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIE 508

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            ++  + P     +++++    +F    I  QL      +V LPS G ++I++TEA+  +
Sbjct: 509 AYVTYVAPDLVSRLQKWDSADDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 568

Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           DVN+G+ T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 569 DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 628

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           +L E L +DR + QV  +++ GL++M+R+R+ + +LE  ++ C  C G G +     ++ 
Sbjct: 629 RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEQCAGRGLVVHDQPLSG 688

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
               + +                +          R                         
Sbjct: 689 RSGGASDYIHRHERNDRKRSRAAA------REDSRDQ----------------------- 719

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
               +K   +++         +   A S                  + +     +   +S
Sbjct: 720 ----QKQDALESKKAERRNAMAAVAAASAQSEDVSEETASTRKKRKRRKRSRRAETAELS 775

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
            E            +         D   V++V+   N I +     +E          E 
Sbjct: 776 LEQEIQGIAEAASEQAHAEVAQREDK--VAEVTE-GNWIGEQGGFSLEQLASAFDRAEEE 832

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            A   +   D +         E   SS     K +R  +RR+
Sbjct: 833 SAEDSS--KDSAEGRSDQDRSEERRSSKRGEKKSSRNRQRRE 872



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
            ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 284 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 343

Query: 75  HPD 77
           + D
Sbjct: 344 NWD 346


>gi|154250984|ref|YP_001411808.1| ribonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154934|gb|ABS62151.1| ribonuclease, Rne/Rng family [Parvibaculum lavamentivorans DS-1]
          Length = 506

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 113/406 (27%), Positives = 198/406 (48%), Gaps = 10/406 (2%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I   ++  Q +LVQ VK+   +KGA ++  +++ GR  VL+PN S G  +SR+I +  
Sbjct: 99  PPISACVQEGQTILVQAVKDPISDKGARLSANVTIPGRLLVLVPNQS-GVALSRRIEDEP 157

Query: 228 DRKNLKEIARGLEVPAGM--------GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279
           +R+ L  +   +              G I+RTA    T  +I  D   L   W  VRE  
Sbjct: 158 ERERLAALVEEMVERFNPMGVTGEPAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETE 217

Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             S AP +V+ + + + + +RD    D S +++     + EA+ + +  MP     ++ +
Sbjct: 218 KRSTAPCVVFHDLDPVSKTLRDCVSADTSRVLIDCADAFGEAQRYCRRAMPEMLDRIQLF 277

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
             P  +F    ++ ++++  +    LPS G++ +  TEAL +IDVNSGR T    +E+T+
Sbjct: 278 NGPGQLFSLYDVDGEIEAALEPRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETS 337

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           ++ NLEA  EI  QLRLR   GLIV+DFI + +  N + V   L E   KDR   Q+  +
Sbjct: 338 VKINLEAVHEIVYQLRLRGTGGLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGM 397

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGL+EM+R+R+R  + +  T+   Y  G    ++ +++A  +LR +           +
Sbjct: 398 SEFGLVEMTRKRVREPLDKLLTEP-AYPHGRPRRKTCATMANDLLRRIAREAQATPGRPL 456

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           +     +VV +L       +     +    I+++       +   +
Sbjct: 457 VARASVEVVDWLERGNPYLVERLRRKVPADISLIGEPAFPRERIDV 502



 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 12/80 (15%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIK-----------GNIYLAKVTR 49
          M+ ++LI+     ETRV ++ D R  EL  E   +  +K           GNI+L +V R
Sbjct: 1  MSEEVLINV-GPGETRVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQR 59

Query: 50 VEPSLQAAFVDYGGNRHGFL 69
          V P +QAAFV+ G  R GFL
Sbjct: 60 VLPGMQAAFVEVGLERAGFL 79


>gi|302545435|ref|ZP_07297777.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463053|gb|EFL26146.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 953

 Score =  220 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 121/334 (36%), Positives = 198/334 (59%), Gaps = 4/334 (1%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+ 
Sbjct: 342 NGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 400

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +    +   +      VP   GVI+RTA    ++ E+ RD + L   W+ +++ A +  A
Sbjct: 401 DTERAR--LKQILKKIVPEDAGVIVRTAAEGASEDELARDVQRLQAQWEEIKKKAKSGNA 458

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+Y E ++  R +RD++ +D S++IVSGE  ++    ++  + P     ++++     
Sbjct: 459 PTLLYGEPDMTVRVVRDIFNEDFSKVIVSGEDAWQTIHGYVSHVAPDLVDRLQKWNSDVD 518

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403
           +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T +   +E+T  + N
Sbjct: 519 VFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNN 578

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ G
Sbjct: 579 LEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 638

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           L++M+R+R+   +LES ++ C +C G G I    
Sbjct: 639 LVQMTRKRVGQGLLESFSESCVHCNGRGVIVHMD 672



 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   + E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 262 ERVMVVRQNGERTQIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 321

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 322 KGRNAVLYAGEV 333


>gi|307152015|ref|YP_003887399.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7822]
 gi|306982243|gb|ADN14124.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7822]
          Length = 654

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 135/555 (24%), Positives = 237/555 (42%), Gaps = 34/555 (6%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  ++L GRY VLMP   +G  +SR+I N  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIRNEDER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W+ +++ A ++  P L+ 
Sbjct: 141 SRLRA-LAILVKPAGMGLLVRTEAEGKAEEAIMEDLEVLQKQWELIQQQAASTRPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + I+R +RD+Y  D++ I+V      +  K  +       +     +  + +   + 
Sbjct: 200 RDDDFIQRVLRDMYTSDVNRIVVDTPASVKRVKQHLIGWSGGRSPEGVVIDYHRESQSVL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G+IVVDFIDM+ +++   + +   ++LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVIVVDFIDMDSRRDQLKLLEHFNKALKADKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   + C  C G G++      +  +           +   +       
Sbjct: 380 LTRKRQGKNIYELFGQPCPTCSGLGHLAHLPGESDVV-----------SLETLSFSPPPT 428

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
           V                 R      +             + G      ++  +      Q
Sbjct: 429 VPAVTHAP----------RLPEKPIIEPEPSFDANY---DDGDETSQQMDLLYHPNYQDQ 475

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
             +  +       ++ +     ++ L  I +  +  E       RR R  R +   +   
Sbjct: 476 GLAAARRRRRRRSNDLIKEEGGTKILPGIPERELDLEYEPPREDRRERGVRNQRRDEMPL 535

Query: 647 AGVVSDVSSIQNVIDDSFDMY-----MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
             V  ++S ++  +     +                ++              I  VS P 
Sbjct: 536 ERVSVEMSDLEQDVYSEMGISPLILLEREFKDPRTVIVSVKPKDKETREIREITSVSEPV 595

Query: 702 MESSNSSSDPIVKKT 716
           + S +  S+    +T
Sbjct: 596 VNSVSPISEIAQPET 610



 Score = 76.2 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I     E+  +  +   D +++EL        Q  G+IYL  V  V P + AAF
Sbjct: 1  MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVGDIYLGLVENVIPGIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          V+ G   R+GF+   ++ P
Sbjct: 54 VNIGDAERNGFIHVTDLGP 72


>gi|88855100|ref|ZP_01129765.1| ribonuclease G [marine actinobacterium PHSC20C1]
 gi|88815628|gb|EAR25485.1| ribonuclease G [marine actinobacterium PHSC20C1]
          Length = 944

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 131/562 (23%), Positives = 244/562 (43%), Gaps = 11/562 (1%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
            +   I+  +K    +LVQ+ K+  G+KGA +T+ +SL GRY V +PN S    ISRK+ 
Sbjct: 371 PQARRIELALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMSG-ISRKLP 429

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +    +  K       +P  +GVI+RTA    T+ ++  D   L   W ++        A
Sbjct: 430 DTERSRLKK--ILKGVLPENVGVIVRTAAEGATEEQLTLDVSRLTNQWADISAQVDKVQA 487

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L++ E +L+ + IRD++ +D  ++++ G+   +  +++++ + P     ++ +E    
Sbjct: 488 PALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARKTIENYVRSVAPDLLDRLQPHESTVD 547

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403
            F    +  Q++     +V LPS G ++I++TEA+  +DVN+G+       +E+T  + N
Sbjct: 548 SFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNN 607

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           +EAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +DR + QV  +++ G
Sbjct: 608 VEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLG 667

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L++M+R+++   +LE+ ++ C  C G G +     V     R       Q  +     + 
Sbjct: 668 LVQMTRKKLGLGLLETFSENCEVCAGRGVVVHHDPVTKH--RQQPTQNEQAGSGRRGRNR 725

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
             +                      +       +          G+      N  H +  
Sbjct: 726 GGNGNGSGNGSGNGGNSGGGNSGSGANGGSQNQQSNSPS-KSSNGASSNGAGNGTHAITE 784

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
           D +          V          +  + E  +    S +S      ++    ++  A  
Sbjct: 785 DVRNALARVAASTVLSATEHPAEERVPAAEAPETTQKSGKSAKSDAPQKSDAPQKTAAPQ 844

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              +G  S+ +  +   + S     +  +      +       ++    + P +ST + E
Sbjct: 845 KSSSGSKSNTAKAEKKANTSATQTADVVEGAAETAVAIFDIPISKTSQAA-PKISTQDAE 903

Query: 704 S---SNSSSDPIVKKTRWWKRR 722
               S   + P  K+    K R
Sbjct: 904 QILGSVLEALPEPKQPGHGKAR 925



 Score = 93.9 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
            ++ VL D  + E          + GN+YL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 298 IQIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEV 357

Query: 75  HPD 77
             D
Sbjct: 358 DWD 360


>gi|310779299|ref|YP_003967632.1| RNAse G [Ilyobacter polytropus DSM 2926]
 gi|309748622|gb|ADO83284.1| RNAse G [Ilyobacter polytropus DSM 2926]
          Length = 488

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 133/493 (26%), Positives = 245/493 (49%), Gaps = 15/493 (3%)

Query: 74  IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133
           I+ D +Q     R ALL++  + +   E   +    G++      ++      A      
Sbjct: 6   INVDDFQT----RAALLEDDKLTEFFIERSDEVKVTGNIYKGRVANVLPGMESAFLDIGL 61

Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193
           E+ + +         V+D++      +         I++++     ++VQI+K+ RG KG
Sbjct: 62  EKNAFL--------YVKDLREFEEMYLDGIENSDRPIEDLLNVGDEVVVQILKDPRGTKG 113

Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253
           A VTT+ ++ G+Y VLMPN        +   +   ++   E       P  MG I+RTA 
Sbjct: 114 ARVTTHYTIPGKYLVLMPNNDYVAISQKIKNDKERKR--LEELLKEIKPDNMGFIIRTAA 171

Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313
             + ++  +R+ EYL++ W ++      S    ++Y +  L+K  +RD++  +I E+++ 
Sbjct: 172 EGKNELHFEREVEYLVKKWHDIERKISTSKPGDIIYRDNELVKTVLRDIFSSNIEELVID 231

Query: 314 GEKGYREAKDFMKLLMPSYARIV-RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372
            EK Y E  D++     S  +   + Y +  P+F   G+  QLD   +  V L   GY++
Sbjct: 232 NEKKYWEIIDYINAFSESSMKTKIKLYNENLPVFETYGVNSQLDKALKEVVWLDCGGYLV 291

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           I +TEALVSID+N+G++T    +EDT  +TN+EAA+EI RQLRLR+++G+I++DFIDM+ 
Sbjct: 292 IQRTEALVSIDINTGKNTGRMNLEDTVFETNIEAAKEIPRQLRLRNMSGIIIIDFIDMKH 351

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
           +++   V + L+E LKKDR +  +   ++ GL+EM+R+R+   +     + C +C G G 
Sbjct: 352 EEDKLKVTEVLEEHLKKDRIKNNIIHFTDLGLIEMTRKRVGKPLSHYYQEECVHCNGTGK 411

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           I+S+ SV   ++  ++    +     + +    ++  +        I  Y    G    V
Sbjct: 412 IKSKDSVINEVITEIKIVSDEKDISTVRLKISKELNGFFKGIYDEFIKVYLKSKGKFFKV 471

Query: 553 VIGIELADKLFYI 565
            +     +  + I
Sbjct: 472 EVDPLKDNYDYEI 484



 Score = 98.5 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          N+++I+     +TR  +L D+++ E   E   + ++ GNIY  +V  V P +++AF+D G
Sbjct: 2  NQIIINVDD-FQTRAALLEDDKLTEFFIERSDEVKVTGNIYKGRVANVLPGMESAFLDIG 60

Query: 63 GNRHGFLPFLEI 74
            ++ FL   ++
Sbjct: 61 LEKNAFLYVKDL 72


>gi|229496574|ref|ZP_04390288.1| ribonuclease, Rne/Rng family [Porphyromonas endodontalis ATCC
           35406]
 gi|229316471|gb|EEN82390.1| ribonuclease, Rne/Rng family [Porphyromonas endodontalis ATCC
           35406]
          Length = 522

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 124/405 (30%), Positives = 213/405 (52%), Gaps = 7/405 (1%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
            R+  I+ V+   Q LLVQ+ KE    KGA ++T LSLAGR  VL P      ++S+KI+
Sbjct: 106 PREGKIENVLSAGQTLLVQVTKEPISTKGARLSTTLSLAGRSMVLFPF-GNKVSVSKKIS 164

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +  + K LK + + ++   G  V++RT+   +  +E+  +   L+  W++  +    + A
Sbjct: 165 SKEEGKRLKSLIQSIKPE-GFTVVIRTSAIGKKALELHAELNRLVNRWNDSVKKLPRAKA 223

Query: 285 PHLVYEEGNLIKRAIRDLYCK-DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           P L+  E N     +RD +     +EI ++ +  Y   KD++  + P    IV  Y++  
Sbjct: 224 PALICAEPNRALSLLRDTFSAATYTEIAINDKDMYGAIKDYISTIAPDSTDIVSYYDNSK 283

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQT 402
           PIF    +  Q+ SL    VT     Y+II +TEA+  +DVNSG  +R+    EDTAL  
Sbjct: 284 PIFDHYDVTRQVKSLFGRTVTYKGGAYLIIEKTEAMHVVDVNSGNRSRKSNAQEDTALDV 343

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NL AAEE+ARQLRLRD+ G+IVVDFIDM + ++ + +   ++  +K DRA+  +  +S F
Sbjct: 344 NLSAAEELARQLRLRDMGGIIVVDFIDMNDPQHCKQLYDHMRALMKTDRAKHNILPLSKF 403

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
            +++++RQR+R +  E T + C  C G G +++   +   I + V + +  +      +H
Sbjct: 404 CVMQITRQRVREATTEHTEETCPTCMGTGKMQASILLVEQIEKKVADLIENHNVRQCNLH 463

Query: 523 THSDVVLYLLNQKR---ATIVEYEARFGVSINVVIGIELADKLFY 564
            +  V  YL   +    +    +  ++   + +V    +A   + 
Sbjct: 464 VNPYVAAYLQRHEIFSPSEFSRWRKKYSRGLKLVEDQSIAFLDYK 508



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M ++++ID    +E  + +L D ++ E   E  +     G+IYL KV ++ P L AAFVD
Sbjct: 1  MDSQLIIDV-RPKEVAMALLEDRKLVEFQREKSNSSCAVGDIYLGKVRKIMPGLNAAFVD 59

Query: 61 YGGNRHGFLPFLEIH 75
           G  +  FL + ++ 
Sbjct: 60 IGSGQDAFLHYYDLG 74


>gi|320531422|ref|ZP_08032387.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136361|gb|EFW28344.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 832

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 135/580 (23%), Positives = 240/580 (41%), Gaps = 24/580 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++ + +   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 248 GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 307

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+ +    +  K       VP   GVI+RTA    T+ ++  D E L+  W+
Sbjct: 308 TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGATQEQLTADVERLVNQWE 364

Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + +        +  AP L+  E  L  R IRD++ +D  +++VSG+  +     ++  +
Sbjct: 365 AIDKKASSIMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLVVSGDNTWSTISQYIDDV 424

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P  +  +  +  P  +F    ++ QL      +V LPS G ++I++TEA+  IDVN+GR
Sbjct: 425 SPDLSERLEHWVGPEDVFTAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 484

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L
Sbjct: 485 FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 544

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
            +DR R QV  +++ GL++M+R+R+   ++E+ +  C +CKG G+I     V       +
Sbjct: 545 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQ-QVDM 603

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-----------FGVSINVVIGI 556
                +    +       +       +K A     E +            G  +      
Sbjct: 604 SASASRGGGRSRGRKNREEQAAAGGGRKEAKKDSQETKGSKSSGHGKGSAGRDVAGSPES 663

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
              D+     +G+  Q          +  +     +           +    ++ +E   
Sbjct: 664 GADDEARAAVRGALAQIAAAAEQAHNAQIEGQGSHERQGDAEGSATGVSGSVNDVVETEG 723

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                +     +     + R R+             V    +  D   +           
Sbjct: 724 PASGQDAQVPPVEDEPVKTRSRKAT---EKKSSKKAVEKSGDKADKKPEKKAGGKPEKKT 780

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                G      +   S P    P   +   ++      +
Sbjct: 781 AKKSEGPAEPQPDEAPSEPAGEKPARRTRRRATAKSTAPS 820



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ VL D  + E       +  + GN+Y+ +V  V PS++AAFVD G  R+  L   E++
Sbjct: 192 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 251

Query: 76  PD 77
            D
Sbjct: 252 WD 253


>gi|166364261|ref|YP_001656534.1| ribonuclease E [Microcystis aeruginosa NIES-843]
 gi|166086634|dbj|BAG01342.1| ribonuclease E [Microcystis aeruginosa NIES-843]
          Length = 719

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 226/477 (47%), Gaps = 14/477 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  ++L GRY VLMPN  +G  +SR+I +  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGNKGPRLTGNVTLPGRYLVLMPN-GRGVNLSRRIRSEDER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E+L + W++++++A+++ AP L+ 
Sbjct: 141 SRLRA-LAILVKPAGMGLLVRTEAEGKAEEAIIEDLEFLQKQWESIQQMAVSTRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ---YEDPHPIF 346
            + + I+R +RD+Y  D++ I+V      +  K  +       A        + +  PI 
Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPVAVKRVKQQLTNWGGGKALEGVYIDSHRETQPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G++VVDFIDM+ +++   + +   ++LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVVVVDFIDMDSRRDQLKLLELFNKALKSDKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   K C +C G G++        +I               I+  T++ 
Sbjct: 380 LTRKRQGKNIYELFGKTCDHCGGLGHLAHLPGEGNAIALETPTVSRAEKETFIVAPTNTK 439

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
           V   L ++   ++   E    V                       Q   +   +    S+
Sbjct: 440 V---LPDKSAPSVAAAEPYLEVFSEFEAEENAQGMDLSFHPNYQEQVNNSRRRRRRRPSE 496

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
               ++  E    +     I      E   +    EE      +  +R      A +
Sbjct: 497 LLLKEERSEKASTNGVNNEI------EPESEPQRFEEKRERPARLSKRGEDASAAKN 547



 Score = 71.9 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I     E+  +  +   D +++EL        Q   +IYL  V  V P + AAF
Sbjct: 1  MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVADIYLGLVENVIPGIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          V+ G   R+GF+   ++ P
Sbjct: 54 VNIGDAERNGFIHVTDLGP 72


>gi|254382749|ref|ZP_04998106.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194341651|gb|EDX22617.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 923

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 219/399 (54%), Gaps = 8/399 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 197 EDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 256

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 257 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 315

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL--AL 280
           + +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++    +
Sbjct: 316 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQI 373

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
           ++ +P L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P  A  + ++ 
Sbjct: 374 STSSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWETIHGYVNHVAPDLADRLSRWT 433

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTA 399
               +F    I+ QL      +V LPS G ++I++TEA++ IDVN+G+ T +   +E+T 
Sbjct: 434 SEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGKFTGQGGNLEETV 493

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            + NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V +++ E L +DR + QV  +
Sbjct: 494 TRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEV 553

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           ++ GL++M+R+R+   +LES ++ C +C G G I    +
Sbjct: 554 TSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 592



 Score = 92.0 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 12  VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71
            E T++ VL DN + E     E      GN+YL KV  V PS++AAF+D G  R+  L  
Sbjct: 188 GERTQIGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYA 247

Query: 72  LEI 74
            E+
Sbjct: 248 GEV 250


>gi|15615576|ref|NP_243880.1| cytosolic axial filament protein [Bacillus halodurans C-125]
 gi|10175636|dbj|BAB06733.1| ribonuclease G (cytosolic axial filament protein) [Bacillus
           halodurans C-125]
          Length = 500

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 118/416 (28%), Positives = 215/416 (51%), Gaps = 4/416 (0%)

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           +++      +  +  K++  I + ++  + LLVQ+ KE  G KG  +T  ++  GRY V 
Sbjct: 70  DELLSFHLSNEEEDEKKKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGVVAFPGRYVVY 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MP         +        +   E  + L      G+I+RTA     + E +++  +  
Sbjct: 130 MPQAGYVGVSKKIFPEEERERWRSEWEQLLLN--DEGLIIRTACKKEVRHEAEQEILFFR 187

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           ++W+ +++    + AP L+Y+   LI+R +RD    ++ EI+V   + Y   K  +    
Sbjct: 188 QMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEYHFIKQLLASY- 246

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P+    V  Y+    +F    +E +++   + +V L + GY++++  EAL  IDVNSG+ 
Sbjct: 247 PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAEALTVIDVNSGKF 306

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             +  ++DT ++ N+EAA+EIA QLRLRD++G+I++DFIDM+ +++ + V   L+++LK 
Sbjct: 307 IGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQLVLHTLEQALKT 366

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           DR +  V  ++  GL+EM+R+++R S+  S +K C  C+G G + S  + A  I R + E
Sbjct: 367 DRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDEAQAFKIERELWE 426

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           Y     A  I++   S +   L  Q    +   E   G  I  V    L ++ + I
Sbjct: 427 Y-RGSDAEAIVLELPSHIAPVLFGQDGGHLKRLETAIGSRILAVPKKTLKEEQYEI 481



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 3   NKMLID-ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             +L + A+   E R  V+ + +V EL  E   +++I GN+Y  +V  V P +QA FVD 
Sbjct: 2   KSILFNMATR--ERRAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDI 59

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           G  ++GFL   E+               L      +     ++D V  G+  +      
Sbjct: 60  GREKNGFLYRDELLS-----------FHLSNEEEDEKKKRNISDFVQEGEELLVQVTKE 107


>gi|315604383|ref|ZP_07879449.1| ribonuclease G [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314089|gb|EFU62140.1| ribonuclease G [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 924

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 159/570 (27%), Positives = 253/570 (44%), Gaps = 39/570 (6%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 293 GEVNWDAVGMEGKPRRIEAALKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPGG 352

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       VPAG GVI+RTA    T+ +I+ D   L R W+
Sbjct: 353 SMMG-ISRKLPDKERARLKK--ILKAVVPAGSGVIVRTAAEGATEAQIRDDVARLTRQWE 409

Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            + +   ++   P L+  E  L  R +RD++ +D +++++ G   Y   KD++  L P  
Sbjct: 410 EIDKKRSSTKNAPVLLRGEPELAVRVVRDIFNEDFTKLVIQGRNTYATVKDYVDELSPEL 469

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
           +  V Q+     +F    I+ QL      +V LPS G +II++TEA+  IDVN+G+    
Sbjct: 470 SDRVEQWVGTEDVFHAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKFIGA 529

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++++DF+DM  + N   V ++L E L +DR
Sbjct: 530 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 589

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            R QV  I++ GL++M+R+R+   ++E+ +  C  C+G G+I     V  S   S  +  
Sbjct: 590 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSSPCEACEGRGFIVHHHPVEASGADSSSKGA 649

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
                                 QKRA     EA  GV            K       +  
Sbjct: 650 KSAKKS----------------QKRAEPRRIEA--GV-------EHERAKEALSAIAAAS 684

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
               +          A    +      +D +     +  S  D  ++  S+ S     KR
Sbjct: 685 SRKDDDAPSEAPVPAAKGTAQAAAREVEDASSATGTEQASAPDQAESKASDASAQEATKR 744

Query: 632 RRRRRRRRPAT---------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            RRRRR   AT         D  D    ++ +  +N +D       E +           
Sbjct: 745 PRRRRRVAEATPVPDLPVHIDLPDPVETAEQAPAKNAVDIELPERQEKAPANRRRASHKA 804

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
           A   +     +  P   P   +S  S+   
Sbjct: 805 ATAASGEPSSAPSPAEPPAHPASQESAPRN 834



 Score = 97.0 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ +L D  + E       +  + GNIYL +V  V PS++AAFVD G  R+  L   E++
Sbjct: 237 QIALLEDGLLVEHYVARRTQSSMVGNIYLGRVQNVLPSMEAAFVDVGRGRNAVLYAGEVN 296

Query: 76  PD 77
            D
Sbjct: 297 WD 298


>gi|315504188|ref|YP_004083075.1| ribonuclease, rne/rng family [Micromonospora sp. L5]
 gi|315410807|gb|ADU08924.1| ribonuclease, Rne/Rng family [Micromonospora sp. L5]
          Length = 1089

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 220/461 (47%), Gaps = 24/461 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++ +++   +LVQ+ K+  G+KGA +T++++L+GR+ V +PN 
Sbjct: 602  GEVNWDATGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPN- 660

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   ++ L+++ + L    G GVI+RTA    ++ E+ RD + L   W+
Sbjct: 661  GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 718

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +++  A    AP L+YEE +L+ R +RDL+ +D  E+++ GE  Y   + ++  + P   
Sbjct: 719  DIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLV 778

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              +R++     +F    I+ Q+      +V LPS G ++I++TEA+  +DVN+G+ T   
Sbjct: 779  ARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSG 838

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR 
Sbjct: 839  GNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 898

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI--------- 503
            + QV  I++ GL++M+R+RI + +LE+ ++ C  CKG G I     V             
Sbjct: 899  KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPVPEKPRGGAGEKVK 958

Query: 504  ----------LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
                               +  A    V    +                E R    +   
Sbjct: 959  AVASAVAAPAEEKGRRRGRKAAAEKPAVEAAPEQPSAQPQAVTEAPAAPE-RTVAEVVET 1017

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
                   + + + +                   A     + 
Sbjct: 1018 DDDYYDTQGYDLSRFETDTPAAPAIADSQEGDSARLAAADD 1058



 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E          + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 545 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 604

Query: 75  HPD 77
           + D
Sbjct: 605 NWD 607



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 1/151 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                G +      A +   +        A      +             E+    RKR 
Sbjct: 3   ENEPEGGERTGAEPAGTTADSATTASGSAASATSAGAGGATTEGTVEGVAETKPPARKRA 62

Query: 633 RRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            RR+       +  DA V +  +   +      ++    +   +                
Sbjct: 63  SRRKAAPLNQPEQTDAPVEASTTVTGSGESPQAEVLAPVAGELDTAPKTTRRRRKATPAK 122

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               PV+   +E+++    P VK TR  +R+
Sbjct: 123 AVEEPVAAAGVEAASEEVVPPVKVTRTRRRK 153


>gi|309810421|ref|ZP_07704252.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185]
 gi|308435618|gb|EFP59419.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185]
          Length = 784

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 218/413 (52%), Gaps = 6/413 (1%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +T    + D V         + +      +     +    S+ +A  D+      V
Sbjct: 200 EQEGRTQIGVLEDGVLAEHYVSRQEQASSMAGNVYLGRVQNVLPSMEAAFVDIGRGRNAV 259

Query: 153 --KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
              G    D      +   I+  +K  + +LVQ+ K+  G+KGA +T+ +SL GR+ V +
Sbjct: 260 LYAGEVNWDAAGLDNQPKRIEHALKAGESVLVQVTKDPIGHKGARLTSQISLPGRFVVFV 319

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           P  S    ISRK+ +    +  +       VPA  GVI+RTA    ++ E++ D E LM+
Sbjct: 320 PGNSMTG-ISRKLPDTERARLKR--ILKEVVPADAGVIVRTAAEGASEEELRADVERLMK 376

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           +W+ ++  A  + AP L++ E +L  R IRD++ +D ++++VSGE+ + E   ++  + P
Sbjct: 377 MWERIQAKAETANAPSLLHGEPDLTVRVIRDVFNEDFAKMVVSGERAWNEVHTYISEVAP 436

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                + ++E    +F    I+ QL      +V LPS G ++I++TEA+  +DVN+G+  
Sbjct: 437 DLVERLEKWEGDEDVFAEHRIDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFV 496

Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                +E+T  + N+EAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +
Sbjct: 497 GSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRELVVRRLLECLGR 556

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           DR + QV  +++ GL++M+R+R+ + ++E  ++ C  C+G G +     V   
Sbjct: 557 DRTKHQVAEVTSLGLVQMTRKRVGAGLVEVFSETCESCQGRGIVIHDHPVENR 609



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 15  TRVVVLRDNRVEELDFESEHK-KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
           T++ VL D  + E     + +   + GN+YL +V  V PS++AAFVD G  R+  L   E
Sbjct: 205 TQIGVLEDGVLAEHYVSRQEQASSMAGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGE 264

Query: 74  IHPD 77
           ++ D
Sbjct: 265 VNWD 268


>gi|239987588|ref|ZP_04708252.1| hypothetical protein SrosN1_09814 [Streptomyces roseosporus NRRL
           11379]
          Length = 692

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 217/399 (54%), Gaps = 9/399 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 188 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 247

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 248 MAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 306

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN- 281
           + +    +   +      VP   GVI+RTA    ++ E++RD E L + W+++++ A   
Sbjct: 307 LPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAKGT 364

Query: 282 --SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             S AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P     + ++
Sbjct: 365 SGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRW 424

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDT 398
                +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T +   +E+T
Sbjct: 425 TSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEET 484

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             + NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +DR + QV  
Sbjct: 485 VTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAE 544

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           +++ GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 545 VTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 583



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   + E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 170 ERVMVVRQNGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 229

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 230 KGRNAVLYAGEV 241


>gi|167630753|ref|YP_001681252.1| ribonuclease, rne/rng family [Heliobacterium modesticaldum Ice1]
 gi|167593493|gb|ABZ85241.1| ribonuclease, rne/rng family [Heliobacterium modesticaldum Ice1]
          Length = 418

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/328 (35%), Positives = 195/328 (59%), Gaps = 3/328 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I +++K  Q + VQ++KE  G KG  VT +L+L GR+ VL+P+  +G  +SR+I +P +R
Sbjct: 87  IGDILKPGQEVTVQVLKEGIGGKGPRVTCHLTLPGRWVVLLPDGDQGG-VSRRIEDPAER 145

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           + L+++A  L  P GMG+I+RT  A  ++ E+  D   L + W  ++E A    AP L+ 
Sbjct: 146 ERLRKLADRLRQP-GMGLIVRTTAAGASEEELAADVARLGQRWARIQEKASRRPAPCLIE 204

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
             G+L++R +RD     + +I V+    Y    ++    +P+    +R  E+    +   
Sbjct: 205 SSGDLVERLLRDRIDDGVEQIRVNDRDVYSRMWEWAGENLPALRPRLRL-EEGRDFWAEQ 263

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +  +++   + +V L S GY++I +TEAL  IDVN+GR T    +E+T  QTN+EAA+E
Sbjct: 264 NLHSEIEKALRPKVWLKSGGYLVIEETEALTVIDVNTGRFTGTVNLEETIRQTNIEAAQE 323

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           ++RQLRLR++ G+IV+DFIDM + ++   V + L+  L +D+AR  V  ++  GL+EM+R
Sbjct: 324 VSRQLRLREIGGIIVIDFIDMRDDRHRAEVLETLEAHLARDKARTSVLGLTALGLVEMTR 383

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           +++R S+    T  C  C+G G +    
Sbjct: 384 KKVRQSLGALLTVPCECCEGRGRVVKGE 411



 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L+     E T+V VL ++R+ E+ +E   +  + GNIY  +V  V P +QAAFVD
Sbjct: 1  MNKTVLVQV-DKEWTKVAVLEEDRLVEVHWEQNDRGAMVGNIYRGRVENVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLE 73
           G  R+ FL   +
Sbjct: 60 IGWERNAFLVLAD 72


>gi|148272667|ref|YP_001222228.1| putative ribonuclease [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830597|emb|CAN01533.1| putative ribonuclease [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 1006

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 129/559 (23%), Positives = 236/559 (42%), Gaps = 9/559 (1%)

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
             I+  +K    +LVQ+ K+  G+KGA +T+ +SL GRY V +PN S    ISRK+ +  
Sbjct: 434 RRIEVALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNG-ISRKLPDTE 492

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
             + LK+  + +     +GVI+RTA    T+ ++K D E L   W  +      + AP L
Sbjct: 493 RAR-LKKTLKEVLPE-NVGVIVRTAAEGATEEQLKLDVERLTSQWAEISRQVEKAQAPAL 550

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           ++ E +L+ + IRD++ +D  E+++ G       + +++ + P     V+ Y      F 
Sbjct: 551 LHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQTYSGEKDSFD 610

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEA 406
              +  Q++     +V LPS G ++I++TEA+  +DVN+G+       +E+T  + NLEA
Sbjct: 611 HHRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEA 670

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E L +DR + QV  +++ GL++
Sbjct: 671 AEEIVRQMRLRDIGGIIVVDFIDMVLETNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQ 730

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+++   +LES ++ C  C G G I     +     +   +  +Q            +
Sbjct: 731 MTRKKLGLGLLESFSENCETCAGRGIIIHHDPLMAH--KQTPQEPVQGQGRRRGGKGQQE 788

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY--IEKGSPVQALVNTGHKVGSD 584
                                                   + K +              +
Sbjct: 789 HGNGSGGNGGGRGNGGGQAQQQQRTPAASTHSITDDARSALAKIATSTIQTVNEAIDRVE 848

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
               + D++ +   Q E+     ++      +       ++    + + R   + PA + 
Sbjct: 849 DVVRTPDESTDAAVQPESAPLEEQTRGDRPRRSRGGRGRASSATVEAQDRSEPQAPAAEA 908

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH-GFTENYDVSIPPVSTPEME 703
             A V     +   V + +         I    +                +      ++ 
Sbjct: 909 ASAPVEDPTPADAPVEEPALSTLEPREAIRLEPVQILDIPVASARTAPRRVSSADAEQLL 968

Query: 704 SSNSSSDPIVKKTRWWKRR 722
            S   + P  K+    + R
Sbjct: 969 GSVLDALPQPKEPGQGRSR 987



 Score = 91.2 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           I  S   + ++ VL D  + E       +  + GN+YL +V  V PS++AAF+D G  R+
Sbjct: 351 IVRSRDGKIQIGVLEDQVLVEHYVARADEASLIGNVYLGRVQNVLPSMEAAFIDIGRGRN 410

Query: 67  GFLPFLEI 74
             L   E+
Sbjct: 411 AVLYSGEV 418


>gi|296130124|ref|YP_003637374.1| ribonuclease, Rne/Rng family [Cellulomonas flavigena DSM 20109]
 gi|296021939|gb|ADG75175.1| ribonuclease, Rne/Rng family [Cellulomonas flavigena DSM 20109]
          Length = 1117

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 201/373 (53%), Gaps = 14/373 (3%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I++ +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY V +P       ISRK+ +
Sbjct: 586 QPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVYVPGGGMTG-ISRKLPD 644

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + LK+I R L      GVI+RTA    ++ E++ D   L   W+ + +    + AP
Sbjct: 645 TERSR-LKKILRDLVPD-SAGVIVRTAAEGASEEELRADVARLQGQWEAIEKKRRTANAP 702

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+  E ++  R +RD++  D S ++V G+  +     ++  L P  A  V ++     +
Sbjct: 703 ALLQGEPDMAIRVVRDIFNDDFSSLVVQGDDAWSTISTYVGELAPDLAARVEKWTGTQDV 762

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNL 404
           F    ++ QL      +V LPS G ++I++TEA+  +DVN+G+ T     +E+T  + NL
Sbjct: 763 FSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGAGGTLEETVTRNNL 822

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ GL
Sbjct: 823 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 882

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYI----------RSQSSVALSILRSVEEYLLQY 514
           ++M+R+R+   ++E+ ++ C +C G G+I          R +     +      +   + 
Sbjct: 883 VQMTRKRVGQGLVEAFSETCEHCHGRGFIVHADPVGKGGRPEQHAPPAPEAGESKRSRRK 942

Query: 515 TAHNIIVHTHSDV 527
            A       H  V
Sbjct: 943 RAEASTAAVHPAV 955



 Score = 99.3 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    ++ +  + GN+YL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 516 TQIAVLEDGVLVEHYVSNQAQASMVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV 575

Query: 75  HPD 77
           + D
Sbjct: 576 NWD 578


>gi|325285939|ref|YP_004261729.1| ribonuclease, Rne/Rng family [Cellulophaga lytica DSM 7489]
 gi|324321393|gb|ADY28858.1| ribonuclease, Rne/Rng family [Cellulophaga lytica DSM 7489]
          Length = 516

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 241/566 (42%), Gaps = 62/566 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  + LI  S        + +D ++ EL  E ++     G                   D
Sbjct: 1   MNKE-LIVRSGSNAVDFALTKDGKLIELHKEEDNNNFSVG-------------------D 40

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                  FL                           +     +                 
Sbjct: 41  I------FLA------------------------KIRKPVTGLNAAFVDVGYEKDAFLHY 70

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            ++ P  +   +  + +      D        +            +   I +VIK+ Q L
Sbjct: 71  HDLGPQLSSMLKFVKGASTGKLKDFSLKDFPFEKD--------IDKDGSINDVIKSNQSL 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQIVKE    KG  +++ LSLAGRY V++P + +  ++S+KI +  +++ LK + R ++
Sbjct: 123 LVQIVKEPISTKGPRISSELSLAGRYVVMVPFSDR-VSVSQKIESKEEKERLKRLVRSIK 181

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
              G GVI+RT    +   E+ +D E L+  W  + +    +  P  V  E N     +R
Sbjct: 182 PK-GFGVIIRTVAEGKKVAELDKDLENLLTKWTVMCKKLYKAPHPSKVLVELNRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D++    + I V     Y E KD+++ + P    IV+ YE   PIF + GIE Q+ +   
Sbjct: 241 DVFNDTFTGIHVDDTTLYNEIKDYVQEIAPKKESIVKLYESSVPIFEKFGIERQIKTSFG 300

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
              ++    Y+II  TEAL  IDVNSG RS +    EDTAL+ N+ +A EIARQLRLRD+
Sbjct: 301 RTASMSKGAYLIIEHTEALHVIDVNSGNRSNKAKNQEDTALEVNMISATEIARQLRLRDM 360

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+IVVDFIDM +  + + +   L++ +K DRA+ ++   S FGL++++RQR+R      
Sbjct: 361 GGIIVVDFIDMGKPDHRKKLFDHLRDEMKDDRAKHKILPPSKFGLIQITRQRVRPERNIK 420

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRAT 538
           T +          + +   +   I   +E+ L      +++I+H H  +  YL    ++ 
Sbjct: 421 TMEKNPSGLNGAEVEAPIVLIDKIKSDLEKLLNGPAKDNDVILHIHPFIAAYLTKGLQSI 480

Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564
             ++   +   + V          + 
Sbjct: 481 RFKWFMEYKKWVKVQPRDAYTYLEYR 506


>gi|159904165|ref|YP_001551509.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9211]
 gi|159889341|gb|ABX09555.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. MIT 9211]
          Length = 624

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 137/527 (25%), Positives = 243/527 (46%), Gaps = 13/527 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G+KG  +T  L+L GRY +L PN  +G  ISRK  N  + 
Sbjct: 82  INELLEPRQKVLVQVMKEPTGSKGPRLTGNLALPGRYLILQPN-GQGVNISRK-INSENE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++R+      +  +  D E L++ W+++++ +  S  P L+ 
Sbjct: 140 RNRLRALGVLIKPPGTGLLIRSEAKGINEELLITDLEALLKQWESIQQASEQSSPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            E + I R +RD    +++ +IV    G   AK F+ +           ++ P  +    
Sbjct: 200 REEDFINRILRDHVSPELTSVIVETPGGVERAKGFLGVDSNIIVES---HDQPTNLLDHY 256

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 257 KINKTIFESLKPRVELPSGGYIIIEPTEALTVIDVNSGSFTRSSNSRETVLWTNCEAAIE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDME +++   + +    ++K D +R Q+  ++  GL+E++R
Sbjct: 317 IARQLKLRNIGGVIIIDFIDMESRRDQLQLLEYFTSAIKNDSSRPQIAQLTELGLVELTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R   ++ E  +K CT C G G+  ++      I  S     L  T  +      S    
Sbjct: 377 KRQGQNIYELFSKTCTTCNGLGHT-AEIPGKEEIQTSATIGGLIQTEDSSKKILPSK--E 433

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN----TGHKVGSDS 585
            +   K   + +      ++IN     + ++      +  P    VN      +   S  
Sbjct: 434 VISKAKNPDLAQESESSTLAINSEANNQESESESTNPRQEPELIAVNMSPDEEYVFSSLG 493

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
             P      +   ++ ++  +   E  ++I +    + S    ++RR+ +     +T   
Sbjct: 494 LNPILLLETQPTNENLSVHVVRPGEDAKNILEEAKQQLSQNTNKRRRKTKNGASRSTKTT 553

Query: 646 -DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            +  ++ +   +    +D   + +   D  N+     G+    E  D
Sbjct: 554 LENSLLVNNQEVITASEDEVLIDIAKEDTPNNMPENIGSVEELERVD 600



 Score = 78.5 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  K++I     E+ R+  +L D RV+EL           G+IYL  +  V P + AAFV
Sbjct: 1  MPQKVVI----AEQVRIAALLTDERVDELIV--AQGHYQIGDIYLGTIENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGASEKNGFIHVTDLGP 72


>gi|307330530|ref|ZP_07609672.1| ribonuclease, Rne/Rng family [Streptomyces violaceusniger Tu 4113]
 gi|306883865|gb|EFN14909.1| ribonuclease, Rne/Rng family [Streptomyces violaceusniger Tu 4113]
          Length = 991

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/334 (35%), Positives = 197/334 (58%), Gaps = 4/334 (1%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+ 
Sbjct: 389 NGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 447

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +    +   +      VP   GVI+RTA    ++ E+ RD   L   W+ +++ + +  A
Sbjct: 448 DTERAR--LKQILKKIVPEDAGVIVRTAAEGASEDELSRDVARLQAQWEEIKKKSKSGNA 505

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P  A  ++++     
Sbjct: 506 PSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLQRWTSDVD 565

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403
           +F    I+ QL      +V LPS G ++I++TEA++ IDVN+G+ T +   +E+T  + N
Sbjct: 566 VFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVIDVNTGKFTGQGGNLEETVTRNN 625

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           LEAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ G
Sbjct: 626 LEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 685

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           L++M+R+R+   +LES ++ C +C G G I    
Sbjct: 686 LVQMTRKRVGQGLLESFSESCVHCNGRGVIVHMD 719



 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   + + T++ VL D+ + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 309 ERVMVVRQNGDRTQIGVLEDDVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 368

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 369 KGRNAVLYAGEV 380


>gi|302869337|ref|YP_003837974.1| ribonuclease, Rne/Rng family [Micromonospora aurantiaca ATCC 27029]
 gi|302572196|gb|ADL48398.1| ribonuclease, Rne/Rng family [Micromonospora aurantiaca ATCC 27029]
          Length = 1092

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 223/460 (48%), Gaps = 22/460 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++ +++   +LVQ+ K+  G+KGA +T++++L+GR+ V +PN 
Sbjct: 605  GEVNWDATGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPN- 663

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   ++ L+++ + L    G GVI+RTA    ++ E+ RD + L   W+
Sbjct: 664  GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 721

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +++  A    AP L+YEE +L+ R +RDL+ +D  E+++ GE  Y   + ++  + P   
Sbjct: 722  DIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLV 781

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              +R++     +F    I+ Q+      +V LPS G ++I++TEA+  +DVN+G+ T   
Sbjct: 782  ARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSG 841

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR 
Sbjct: 842  GNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 901

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI--------- 503
            + QV  I++ GL++M+R+RI + +LE+ ++ C  CKG G I     V             
Sbjct: 902  KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPVPEKPRGGAGEKVK 961

Query: 504  ------LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE---ARFGVSINVVI 554
                      EE   +            +      + +   + E      R    +    
Sbjct: 962  AVASAVAAPAEEKGRRRGRKAAAEKPAVEAAPEQPSAQPQAVTEATAAPERTVAEVVETD 1021

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
                  + + + +                   A     + 
Sbjct: 1022 DDYYDTQGYDLSRFETDTPAAPAIADSQEGDSARLAAADD 1061



 Score =  101 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E          + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 548 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 607

Query: 75  HPD 77
           + D
Sbjct: 608 NWD 610



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 1/151 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                G +      A +   +        A      +             E+    RKR 
Sbjct: 3   ENEPEGGERTGAEPAGTTADSATTASGSAASATSAGAGGATTEGTVEGVAETKPPARKRA 62

Query: 633 RRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            RR+       +  DA V +  +   +      ++    +   +                
Sbjct: 63  SRRKAAPLNQPEQTDAPVEASTTVTGSGESPQAEVLAPVAGELDTAPKTTRRRRKATPAK 122

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               PV+   +E+++    P VK TR  +R+
Sbjct: 123 AVEEPVAAAGVEAASEEVVPPVKVTRTRRRK 153


>gi|325278966|ref|YP_004251508.1| ribonuclease, Rne/Rng family [Odoribacter splanchnicus DSM 20712]
 gi|324310775|gb|ADY31328.1| ribonuclease, Rne/Rng family [Odoribacter splanchnicus DSM 20712]
          Length = 514

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/404 (29%), Positives = 206/404 (50%), Gaps = 3/404 (0%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
             +  +   I +++   Q + VQ+ KE    KG  +T+ LS+AGR  VLMP   K  ++S
Sbjct: 101 EPEIPKNGKIADILTVGQWVAVQVAKEPISTKGPRLTSELSIAGRNLVLMPFADK-VSVS 159

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           +KI +P +RK LK +   ++     GVI+RT    +       + + L+  ++   +   
Sbjct: 160 QKIKSPEERKRLKRLIESIKPK-NYGVIVRTVAEGKKVAVFDSELKELVERFEMAFKHIR 218

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
               P L+  E +     +RD+       + V+     +E + F+  + P    IV+   
Sbjct: 219 EIEPPKLILGEIDRTSAILRDILNPSFENVYVNDITLSKEIRHFLTTIAPEKQDIVKYVS 278

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-A 399
              PI    G++ Q+ S     V+  +  Y+II  TEA   IDVNSG  T+    ++T A
Sbjct: 279 PEIPILDHFGVDKQIKSSLGKTVSFKNGAYLIIEHTEAFHVIDVNSGNRTKLGDDQETNA 338

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           L+ NL AAEE+ARQL+LRD+ G+IV+DFIDM++ +N + +  K+KE ++ DRA+  +  +
Sbjct: 339 LEVNLAAAEEVARQLQLRDMGGIIVIDFIDMQKAENRQKLFDKMKECMEIDRAKHTILPL 398

Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519
           S FGL++++RQR+R ++   TT++C  C G G   +   V   I   +E ++ +     I
Sbjct: 399 SKFGLMQITRQRVRPAMTVDTTELCPVCHGTGKAEAAILVIDKIEDELEFFVYEKKNKRI 458

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           I+  H  V  YL     +   ++  R+ +S+ +V         +
Sbjct: 459 ILKVHPFVGAYLKKGLLSMRRKWAFRYHISLKIVDVPSYYIYEY 502



 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+++++ID    +E  + +LR+ ++ EL  E    +   G+IYL KV ++ P L AAFV+
Sbjct: 1  MSSELVIDVK-ADEIVIALLREKKLIELTKEKTSMQFAVGDIYLGKVKKIMPGLNAAFVN 59

Query: 61 YGGNRHGFLPFLEIHPDY 78
           G  +  FL +L++ P +
Sbjct: 60 VGYEKDAFLHYLDLSPQF 77


>gi|150025717|ref|YP_001296543.1| ribonuclease G [Flavobacterium psychrophilum JIP02/86]
 gi|149772258|emb|CAL43734.1| Ribonuclease G [Flavobacterium psychrophilum JIP02/86]
          Length = 514

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 226/577 (39%), Gaps = 65/577 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S  +     +L+D ++ EL  E E      G+I++AK+ +    L AAFV+
Sbjct: 1   MNKELII-RSSSDAVDFALLKDGKLIELHKEEETSNFQVGDIFIAKIRKPVAGLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  +  FL + ++ P+                             VT G +   +  S 
Sbjct: 60  VGFEKDAFLHYHDLGPN-------------------LASQMKFIKLVTTGKIKDFSLKSF 100

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +    I      T+  ++  +    V        G           +Y +     +R  +
Sbjct: 101 QFEKEIDKDGTITDVIAVNQSILVQVVKEPISTKGPRISSELSLAGRYIVLVPFSDRVSI 160

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I  +E  ++   +   +   G              I R +        + +  + L 
Sbjct: 161 SQKIDSKEEKDRLKRLVQSIKPKGF-----------GVIVRTVAEGKKVAEIDKDLQNLM 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                                            ++ +    +  P  V  E N     +R
Sbjct: 210 DKW-----------------------------TSMCKRIPTAHHPSKVLGELNRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSGIEVQLDSLH 359
           D++    S II+  E+ + E K++++ + PS   +V+ Y+      F +  IE Q+ +  
Sbjct: 241 DVFNDTFSGIIIDDEELFNETKEYIQQIAPSKESMVKLYQSKDTPIFEKYSIERQIKTSF 300

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
              V++    Y+II  TEA+  IDVNSG RS +    EDTAL+ N+ AA E+ARQLRLRD
Sbjct: 301 GKSVSMSKGAYLIIEHTEAMHVIDVNSGNRSNKATNQEDTALEVNMIAAAEVARQLRLRD 360

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+I VDFIDM    N + +   L+E +  D+A+ ++   S FG+++++RQR+R  V  
Sbjct: 361 MGGIICVDFIDMSNPDNRKVLFDFLREEMSDDKAKHKILPPSKFGIVQITRQRVRPEVNI 420

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            T +     +    I +   +   I   +E  +  +    ++++ H  +  YL+    + 
Sbjct: 421 ETREENPNNE-NSDIEAPILIIDRIASDLERIIKLHK--KVVLNVHPFIAAYLVKGYPSI 477

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
             ++   +   I ++         ++       +   
Sbjct: 478 RSKWFFEYKKWIKIIPRDSYTYLEYHFNDNQGKEIKD 514


>gi|159039391|ref|YP_001538644.1| ribonuclease [Salinispora arenicola CNS-205]
 gi|157918226|gb|ABV99653.1| ribonuclease, Rne/Rng family [Salinispora arenicola CNS-205]
          Length = 1058

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 228/465 (49%), Gaps = 8/465 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++ +K+   +LVQ+ K+  G+KGA +T++++L+GR+ V +P  
Sbjct: 578  GEVNWDATGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPG- 636

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   R+ L++  + L    G GVI+RTA    ++ E+ RD + L   W+
Sbjct: 637  GNTSGISRKLPDNERRR-LRDALKKLVPE-GAGVIVRTAAEGASEDELARDVKRLQAQWE 694

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +++  A    AP L+YEE +L+ R +RDL+ +D  E+++ GE  Y   + ++  + P   
Sbjct: 695  DIQAKAGKGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDMVESYLSHVSPDLV 754

Query: 334  RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
              +R++     +F    I+ Q+      +V LPS G+++I++TEA+  +DVN+G+ T   
Sbjct: 755  ARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 814

Query: 393  HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              +E+T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V ++L E L +DR 
Sbjct: 815  GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 874

Query: 453  RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
            + QV  I++ GL++M+R+RI + +LE+ ++ C  CKG G I     V            +
Sbjct: 875  KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIVHTEPVPEKPRTGGTGERV 934

Query: 513  QYTAHNIIVHTH---SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
            +  A           +        +    +VE E   G +             +Y   G 
Sbjct: 935  KAVASAETGTAPRRRTRKGSVTAERTSVEVVEGERDAGTTDTPGAAPTTPGADYYDTMGY 994

Query: 570  PVQALVNT-GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
             +              +  P  D        D   +     E  E
Sbjct: 995  DLSRYETETPAAPSVAASQPGDDPARLAAPDDPDAVGGDDGEEPE 1039



 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E          + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 521 TQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 580

Query: 75  HPD 77
           + D
Sbjct: 581 NWD 583


>gi|33241106|ref|NP_876048.1| ribonuclease G/E [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238636|gb|AAQ00701.1| Ribonucleases G/E [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 611

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 141/538 (26%), Positives = 246/538 (45%), Gaps = 21/538 (3%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++  Q +LVQ++KE  GNKG  +T  +SL GRY VL P T +G  +SR   N    
Sbjct: 82  INELLRPSQPVLVQVLKEPTGNKGPRLTGNISLPGRYLVLQP-TGQGVNVSR-QINTETE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N  +    L  P G G+ +R+  A  T+  I  D E L++ W+ +++    +  P L+ 
Sbjct: 140 RNRLKALGVLIKPPGTGLTVRSEAAEVTEELIIDDLENLLKKWELIQQTRDRANPPSLLS 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D+SE+IV   +   +AK F+     +    V    +   +    
Sbjct: 200 RDEDFIHRVLRDNTNSDLSEVIVETTEASDKAKRFL--TPSNKNVTVECLSESVNLLQHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            I++ + +  +  V LPS GY+II  TEAL  IDVNSG         +T L TN EAA E
Sbjct: 258 QIDIAILNALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFAS-ANSSETVLWTNCEAAIE 316

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I+VDFIDM+ +++   + +    ++K D +R ++  ++  GL+E++R
Sbjct: 317 IARQLKLRNIGGIIIVDFIDMDSRRDQLQLLEYFTSAIKDDSSRPKISQLTELGLVELTR 376

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R   ++ E  +K C+ C G G+I S       I  S     L  +   +      +   
Sbjct: 377 KRQGQNIYELFSKECSACSGLGHI-SNIPQKNQIQPSALNLGLVESTPVLQNEVKLNNNN 435

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL--VNTGHKVGSDSQA 587
              N  +  + +      +S NV     L      I K   ++     +  +   S    
Sbjct: 436 KSKNNDQNELSD---SINLSKNVNRDNNLDQP---IIKQEQIEIKMNEDEEYVFSSLGLN 489

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
           P+   + +   ++   + I K+ES + I  N   E+ +    K+ +   R   + +  + 
Sbjct: 490 PTLMLDNQTNHEN-LSIQIIKAESHKKITTNKTEEKQSSSEIKKEKGNSRVFSSLEEDEE 548

Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
            ++ D +    ++ DS            +N +E              P  S  ++E +
Sbjct: 549 SILDDSNKDNELVSDS------SKQDEINNQIETSVELINSQSTSIDPESSEQDLEET 600



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  K++I     E+ R+  +L D RV++L           G+IYL  +  V+P + AAFV
Sbjct: 1  MPQKIII----AEQERIAALLTDGRVDKLIV--AQCHYQIGDIYLGIIENVKPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GFL   ++ P
Sbjct: 55 NIGPSEKNGFLNVNDLGP 72


>gi|227494687|ref|ZP_03925003.1| ribonuclease E [Actinomyces coleocanis DSM 15436]
 gi|226831869|gb|EEH64252.1| ribonuclease E [Actinomyces coleocanis DSM 15436]
          Length = 819

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 138/569 (24%), Positives = 242/569 (42%), Gaps = 60/569 (10%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +      R   I++ +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 251 GEVNWEAVGLAGRPRRIEQALKSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVP-A 309

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISRK+  P   +   +      VP   GVI+RTA    T+ +++ D   L   W+
Sbjct: 310 GQMTGISRKL--PERERTRLKKLLSKIVPKDYGVIVRTAAEGATEEQLRDDVTRLQAQWE 367

Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            + +        P L+  E  L  R +RD++ +D   + V GE+ ++  ++++  L P  
Sbjct: 368 EIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQTVQEYVDELAPDL 427

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
              +R++ +   +F    I+ QL      +V LPS G ++I++TEA+  IDVN+G+    
Sbjct: 428 RDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFIGS 487

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L +DR
Sbjct: 488 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRDLVLRRLVECLGRDR 547

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511
            R QV  I++ GL++M+R+R+   ++E+ +  C  C G G+I  Q+     + R    + 
Sbjct: 548 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFIVHQNP----VERDHTGHA 603

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
           +      +       VV      K   +                                
Sbjct: 604 IMPKT--LRQVQPETVVDPEAEAKHEEVR------------------------------- 630

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
                                +        A     K+++  +     VS +   + +KR
Sbjct: 631 ------------------SALSAIAAAAASAHASEEKNDNHSEGDKADVSTDKVELPQKR 672

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            +  R RR   D  +    + +      + DS    ++          E GA   T   +
Sbjct: 673 TKNERGRRGLKDRRNKQARNQMLDDAEALLDSIGSVLDAKAERKSGEAEVGAGESTVVAE 732

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
             +    T     ++  +    K     +
Sbjct: 733 PVVSGKETVFTAETSVGAQRAPKHRGARR 761



 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + +I        ++ VL D  + E       ++ + GNIYL +V  V PS++AAFVD G
Sbjct: 182 KREMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDLG 241

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ +
Sbjct: 242 KGRNAVLYAGEVNWE 256


>gi|170077410|ref|YP_001734048.1| ribonuclease E [Synechococcus sp. PCC 7002]
 gi|169885079|gb|ACA98792.1| ribonuclease E [Synechococcus sp. PCC 7002]
          Length = 693

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 152/618 (24%), Positives = 256/618 (41%), Gaps = 34/618 (5%)

Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167
                 I      ++V  I     E     I +A  ++    ++      +  P + ++ 
Sbjct: 19  EDQIQEIVVSTGAQQVGDIYLGIVENVIPGIDAAFVNIGDTEKNGFIHVSDLGPIRLRKN 78

Query: 168 YC-IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I E+++ +Q  LVQ++KE  GNKG  +T  ++L GRY VLMP  SKG  +SR+I++ 
Sbjct: 79  SSSITELLEPQQKALVQVMKEPTGNKGPRLTGNITLPGRYVVLMP-YSKGVNLSRRISSD 137

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
            +R  L+     L  P GMG+++RT      +  I  D E L + W+ +++ A     P 
Sbjct: 138 SERNRLRA-LAVLMKPPGMGLLVRTEAEGTDEEAIIEDLELLQKQWEAIQQQANYGRPPT 196

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPH 343
           L+  + + I+R +RD+Y  +++ I+V    G +  K  +       A     +  + +  
Sbjct: 197 LINRDDDFIQRVLRDMYSDEVNRIVVDSASGMKRVKSQLMNWEGGKAPDGLLIDHHREKQ 256

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
            I     +   +    +  V LPS GY+II  TEAL  IDVNSG  T+     +T L TN
Sbjct: 257 SILDYFRVNAAIREALKPRVELPSGGYIIIEPTEALTVIDVNSGSFTKSATARETVLWTN 316

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
            EAA EIARQLRLR++ G+IVVDFIDM+ + +   + +     LK D+AR Q+  +S  G
Sbjct: 317 YEAATEIARQLRLRNIGGVIVVDFIDMDSRHDQLKLLEHFTSILKADKARPQIAQLSELG 376

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSVALSILRSVEEYLLQYTAHNI 519
           L+E++R+R   ++ E   K C +C G G++      +  V L  L  +    LQ  A   
Sbjct: 377 LVELTRKRQGQNIYELFGKPCAHCNGLGHLVHLPGEEEPVPLQ-LNILSSLSLQGGARTP 435

Query: 520 IVHTHSDVVLYLLNQKR---ATIVEYEARFGVSINVVIGIE--------LADKLFYIEKG 568
                      L   +R   +      +R   S  +  G          +    +  +  
Sbjct: 436 GESRPV-----LSGGRRGTTSHGRRITSRVARSKLINAGNTPAAEPLNLVHHPDYQEQSS 490

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +             S       +K  +    D      P  E  +        ++++   
Sbjct: 491 NNNNRRRRRRSPEVSSKPVLRDEKETQDNGGDRPSAETPTKE--KKETKTSSPQDNSNTS 548

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-----IDDSFDMYMEPSDITNHNLLENGA 683
            +  RR R R    +  +   V      +NV     +     +           ++E   
Sbjct: 549 SRYDRRERSRYRRDEPKETVQVEMTEQEKNVYALIGVSPLVRLDAAGKKDPRSTIIEIVR 608

Query: 684 HGFTENYDVSIPPVSTPE 701
            G  +  D +   V+  E
Sbjct: 609 PGSAKETDATSEKVTPVE 626



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I     E+ ++  +   D +++E+        Q  G+IYL  V  V P + AAF
Sbjct: 1  MPKQIII----AEQHQIAAVFWED-QIQEIVV--STGAQQVGDIYLGIVENVIPGIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          V+ G   ++GF+   ++ P
Sbjct: 54 VNIGDTEKNGFIHVSDLGP 72


>gi|291008538|ref|ZP_06566511.1| ribonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 685

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 140/553 (25%), Positives = 241/553 (43%), Gaps = 34/553 (6%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ +     +LVQ+ K+  G+KGA +TT +SL GR+ V +P  
Sbjct: 131 GEVDWDAAGLAGKARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPGG 190

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++   +      VP   GVI+RTA    ++  + RD   L   W+
Sbjct: 191 G-ATGISRKLPDNERKR--LKEILKRIVPENAGVIIRTASEGTSEEALDRDVRRLQAQWE 247

Query: 274 NVREL--ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            ++E   +  + AP L+YEE +L+ + +RDL+ +D S + V G + +   + ++K + P 
Sbjct: 248 VIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWDTIEAYVKHVAPD 307

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
            A  + ++   + +F    I  Q+      +V LPS GY++I++TEA+  IDVN+G+ T 
Sbjct: 308 LAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTG 367

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +D
Sbjct: 368 SGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRD 427

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL--------- 501
           R R QV  +++ GL++M+R+R+ + +LE+ +  C +C+G G + S   V           
Sbjct: 428 RTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTDPVTHAHTNGSGGG 487

Query: 502 ---SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN------- 551
                         +     +     ++          A   E + +             
Sbjct: 488 GGGGRRNRNRGKSQEPETPVVEAAPAAEPEAKAEPAAEAPKPEKQEKPQKQEKAERKAAA 547

Query: 552 -----VVIG----IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
                V          A++    E+  PV+A          +       +      +   
Sbjct: 548 AAEQPVRADKAPEPAKAEQPVEAERAEPVKATEPAPAPEAVEEPVAEQPEAAAPAAEPVR 607

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                ++      Q    +EES+      R RRR+         A     V ++     +
Sbjct: 608 ASQPEEAAPTPASQPEPAAEESSEPAVNGRARRRKVSRPAGSAGAPAAPVVVAVPAKPAE 667

Query: 663 SFDMYMEPSDITN 675
           S +        T 
Sbjct: 668 SSESQDNGVPSTP 680



 Score = 96.6 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 11  HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
           + ++T++ VL DN + E    S     + GN+YL +V  V PS++AAFVD G  R+  L 
Sbjct: 70  NGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLY 129

Query: 71  FLEIHPD 77
             E+  D
Sbjct: 130 AGEVDWD 136


>gi|302519047|ref|ZP_07271389.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302427942|gb|EFK99757.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 1045

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
           +     I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+
Sbjct: 419 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 477

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ A    
Sbjct: 478 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 535

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+Y E ++  R +RD++ +D ++++VSG++ +     ++  + P     + ++    
Sbjct: 536 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 595

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
             F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  + 
Sbjct: 596 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 655

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 656 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 715

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 716 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 750



 Score = 90.4 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D+ + E            GN+YL KV  V PS++AAF+D G
Sbjct: 341 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 400

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 401 KGRNAVLYAGEV 412


>gi|312898778|ref|ZP_07758166.1| ribonuclease, Rne/Rng family [Megasphaera micronuciformis F0359]
 gi|310619940|gb|EFQ03512.1| ribonuclease, Rne/Rng family [Megasphaera micronuciformis F0359]
          Length = 479

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 142/479 (29%), Positives = 228/479 (47%), Gaps = 7/479 (1%)

Query: 88  ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147
            LL    I +    AV ++    D  +  +     V  I     +    ++ +A  D+  
Sbjct: 2   KLLVADVIPEETRMAVIENGKLTDYAVERNDEAHIVNHIYKGVIQNILPAMQAAFVDIGR 61

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
             ++      +  P+   ++   Q  I   Q +LVQ+VK+E+  KGA VT  +S+AGRY+
Sbjct: 62  K-KNAFLYLGDLFPRAATKEEIQQTHISVGQSVLVQVVKDEQPMKGAKVTANVSIAGRYA 120

Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267
           VLMP         +      + +N          P G+G+I+RT     ++ E+  D  Y
Sbjct: 121 VLMPTVDYVGVSKKIQ--DEEERNRLRTIVSAVKPEGIGMIVRTVAKDVSEEELAADLHY 178

Query: 268 LMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327
           L+R W+++R     +  P L+Y E +L+ R IRD    D++ +IV  +  Y     F   
Sbjct: 179 LLRTWESIRARYKTTRKPKLLYREADLLMRMIRDYCTDDVNTVIVDNKDAYERLSSFFSE 238

Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
                 R +  YE   P+F    IE +L ++   +V LPS G +I + TEAL  IDVNSG
Sbjct: 239 DEIDRER-LILYEGEDPVFDYYHIEDELQNVMSRQVMLPSGGTLIFDHTEALTVIDVNSG 297

Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
           +      +E+T    N EAA EIARQLRLRD+ G+I+VDFIDM        + + L+   
Sbjct: 298 KYVGNSTLEETLFHVNREAAVEIARQLRLRDIGGIILVDFIDMPRSDRRDELLRILQRET 357

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
             DRARV V  ++   L+E++R++ R S+  S    CT C G G + S  SV + I+R +
Sbjct: 358 AADRARVHVFGMTALNLVEITRKKSRQSIHLSQFSPCTVCGGTGVLASPESVYIQIVRQL 417

Query: 508 EEYLLQYTAH-NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              +  +    +I++  H+DV+    ++KR      E     S+          ++F +
Sbjct: 418 RHMMKVHPIKGDILISAHADVLALFKDKKRKE--SLERELNRSLYFEDSHHANREVFSV 474


>gi|254819897|ref|ZP_05224898.1| Rne [Mycobacterium intracellulare ATCC 13950]
          Length = 709

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 132/485 (27%), Positives = 223/485 (45%), Gaps = 55/485 (11%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 184 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 243

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W 
Sbjct: 244 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRNDVTRLQERWK 300

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A+             YEE +++ + IRDL+ +D + ++VSG++ +    +++  +
Sbjct: 301 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDEAWNTINEYVNSV 360

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE P           F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 361 APDLVSKLSKYEPPAGPDGSSGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 420

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +DVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 421 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 480

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 481 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHTDPV 540

Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
             A S  R  E    +             V                    V ++      
Sbjct: 541 DSAPSNGRKSESGGRRGRRKKNKAEEPV-VA------------------KVPVH------ 575

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
                      SP +  +      GS +QA S D   +   ++ +     K+   ED+ D
Sbjct: 576 -----------SPGEHPMFKAMAAGSSTQAASEDDESDEATEETSDEFDEKARRDEDVSD 624

Query: 618 NIVSE 622
               +
Sbjct: 625 ADQED 629



 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 127 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 186

Query: 75  HPDYYQIPFSDRQ 87
           + +   +  SDR+
Sbjct: 187 NWEAAGLGGSDRK 199


>gi|67922279|ref|ZP_00515792.1| Ribonuclease E and G [Crocosphaera watsonii WH 8501]
 gi|67855855|gb|EAM51101.1| Ribonuclease E and G [Crocosphaera watsonii WH 8501]
          Length = 678

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 132/561 (23%), Positives = 232/561 (41%), Gaps = 40/561 (7%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  +SL GRY VLMP+  KG  +SR++ N  +R
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYIVLMPH-GKGVNLSRRMRNDDER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W++++  A ++ AP L+ 
Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEGKAEEAIMEDLESLQKQWESIQVQATSTRAPSLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346
            + + I++ +RD+Y  D++ I+V      +  K  +              +         
Sbjct: 200 RDDDFIQKVLRDMYSADVNRIVVDNPNSVKRVKQHLMNWSGGRPPEGVLIDHHQESMSVL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAVREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G+I+VDFIDM+ +++   + +   ++LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKVDKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS---------QSSVALSILRSVEEYLLQYTAH 517
           ++R+R   ++ E   + C  C G G++             SV+ + L             
Sbjct: 380 LTRKRQGKNIYELFGQPCPQCGGLGHLAHLPGESKLVALESVSNNPLPLPIPAPNAKPVE 439

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
                  S     L ++      + E              L    +        +   N 
Sbjct: 440 KPSEANDSAWDSLLEDEDSDNPDQLEL-------------LHHPSYQ-------EQNNNA 479

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
            ++             +    ++  +     S+ + ++      E        RR R  R
Sbjct: 480 TNRRRRRRPPTQAPNLVNKEKEETPV----PSKPVTNVAVKETEENKESSNENRRERVPR 535

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
                D     V  +++  +  +     +   P    +    +  +   +          
Sbjct: 536 HLRREDAPVERVSVEMTPTEQNVYALMGIS--PLVRVDQEFKDPKSVLVSVKSPEGFERK 593

Query: 698 STPEMESSNSSSDPIVKKTRW 718
              +    +  ++      + 
Sbjct: 594 KVEKTPQKSKQTETATPSQKQ 614



 Score = 70.0 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I     E+  +  +   D +++EL        Q   +I+L  V  V P + AAF
Sbjct: 1  MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          V+ G   R+GF+   ++ P
Sbjct: 54 VNIGDAERNGFIHVTDLGP 72


>gi|326330750|ref|ZP_08197053.1| ribonuclease, Rne/Rng family [Nocardioidaceae bacterium Broad-1]
 gi|325951455|gb|EGD43492.1| ribonuclease, Rne/Rng family [Nocardioidaceae bacterium Broad-1]
          Length = 624

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 145/563 (25%), Positives = 244/563 (43%), Gaps = 45/563 (7%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
           K  +   I+ V+ + Q +LVQ+ K+  G+KGA +T+ +SLAGR+ V +P+      ISRK
Sbjct: 93  KEGQPRKIESVLTSGQKVLVQVTKDPIGHKGARLTSQISLAGRFLVYVPD-GTTSGISRK 151

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           + +    +   +      VP   GVI+RTA     + E+ RD E L   W++  E     
Sbjct: 152 LPDTERNR--LKTLLKEIVPDTAGVIVRTAAEGAAEEELTRDVERLKARWED-IEKRAGG 208

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            AP L+Y E +L  + +RDL+ +D +++++SG+  +   KD+++ + P     V +Y+  
Sbjct: 209 NAPQLLYGEPDLTLKVVRDLFTEDFAKLVISGDSSWETVKDYVQSVAPDLEERVEKYDGE 268

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
              F    I+ Q+      +V LPS G +II++TEA+  +DVN+G+ T     +E+T  +
Sbjct: 269 ADAFAAYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGGNLEETVTK 328

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +DR R QV  +++
Sbjct: 329 NNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQVAEVTS 388

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++M+R+RI + +LE+ ++ C  C G G +  +  V                +  +  
Sbjct: 389 LGLVQMTRKRIGTGLLEAFSENCDACGGRGLVIHEHPVEP------------GKSSGVAP 436

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                        +     E                              Q         
Sbjct: 437 DEPRSRRRGGRGGRGKGRDEI--------------------------GGEQRTEPVEESA 470

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
            + S A       +    DE        E+  +   +         +  R R RR +   
Sbjct: 471 RTPSPAEFAAMAGQTEKVDEPAAAAESVETPVETVPSEPETAEAPKVTTRTRSRRSKAVT 530

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
           T+       ++ +     ++ + +    P   T      + A         +  P     
Sbjct: 531 TEEPTVAESTEPAETAQPVETAPEQVEAPKVTTRTRSRRSKASTPAPEPVEAETPAEPVA 590

Query: 702 MESSNSSSDPIVKK--TRWWKRR 722
              + + ++P   K  TR   RR
Sbjct: 591 EAPAAAPAEPEAPKVTTRNRTRR 613



 Score = 95.4 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          T++ VL D  + E     E +  + GN+YL +V  V PS++AAF+D G  R+  L   E+
Sbjct: 26 TQIAVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV 85

Query: 75 HP 76
          + 
Sbjct: 86 NW 87


>gi|239941109|ref|ZP_04693046.1| hypothetical protein SrosN15_08946 [Streptomyces roseosporus NRRL
           15998]
 gi|291444550|ref|ZP_06583940.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347497|gb|EFE74401.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 711

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 217/399 (54%), Gaps = 9/399 (2%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  +  + +   V  +     +    S+ +A  D+      V   G    +   
Sbjct: 225 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 284

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
                  I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK
Sbjct: 285 MAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 343

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN- 281
           + +    +   +      VP   GVI+RTA    ++ E++RD E L + W+++++ A   
Sbjct: 344 LPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAKGT 401

Query: 282 --SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
             S AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P     + ++
Sbjct: 402 SGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRW 461

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDT 398
                +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T +   +E+T
Sbjct: 462 TSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEET 521

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             + NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +DR + QV  
Sbjct: 522 VTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAE 581

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           +++ GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 582 VTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 620



 Score = 93.5 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++   + E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 207 ERVMVVRQNGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 266

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 267 KGRNAVLYAGEV 278


>gi|182438733|ref|YP_001826452.1| hypothetical protein SGR_4940 [Streptomyces griseus subsp. griseus
            NBRC 13350]
 gi|178467249|dbj|BAG21769.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 1415

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 142/536 (26%), Positives = 238/536 (44%), Gaps = 32/536 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 719  GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 778

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L + W+
Sbjct: 779  SMTG-ISRKLPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWE 835

Query: 274  NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            ++R+ A     S AP L+Y E ++  R +RD++ +D S++IVSG++ +     ++  + P
Sbjct: 836  DIRKKAKGTSGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAP 895

Query: 331  SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                 + ++     +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T
Sbjct: 896  DLTERLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGKFT 955

Query: 391  -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             +   +E+T  + NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +
Sbjct: 956  GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 1015

Query: 450  DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
            DR + QV  +++ GL++M+R+R+   +LES ++ C +C G G I        S+      
Sbjct: 1016 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME-QPTSVGGGGGG 1074

Query: 510  YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY-----------------------EARF 546
               +        H H     +                                   E  +
Sbjct: 1075 KKSKKRGRGGAGHDHEHAQDHEHGHDEHAAEPAETEAEVAAEVAAPVAVEPEVTADEEFY 1134

Query: 547  GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
                                + +   A           ++AP  +   E V    A    
Sbjct: 1135 SSPAEAEAAATRGRGRRRASRKASAPAGAPKTEASAPVAEAPVEEARPEPVLDTPAEAAA 1194

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             ++    +  +    E +     +RR  R+   PA     A     V   +   D 
Sbjct: 1195 VEAPETPETPEA-PVEAAPQGRPRRRATRKATAPAGSPKQAEAAEPVRPAEPATDP 1249



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 650 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 709

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 710 KGRNAVLYAGEV 721


>gi|21325135|dbj|BAB99757.1| Ribonucleases G and E [Corynebacterium glutamicum ATCC 13032]
          Length = 756

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 149/627 (23%), Positives = 260/627 (41%), Gaps = 54/627 (8%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  + +D  +  V  I     +    S+ +A  D+      V   G        
Sbjct: 26  EDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKAAG 85

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
              R   I++ +K    +LVQ+ K+  G+KGA +TT +SLAGRY V +P   +   ISRK
Sbjct: 86  LGGRGRRIEQALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPG-GRSAGISRK 144

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           +  P  ++ LKEI   +    G G I+RTA    ++  I  D   L  LW+ ++E     
Sbjct: 145 LPGPERKR-LKEILGRVVPAQG-GTIIRTAAEGVSEENIAADVNRLHTLWEQIKERTAEE 202

Query: 283 VAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
                     +YEE +++ + IRDL+ +D + +IV G++ +   + +++ + P     V 
Sbjct: 203 KKSRGSKPITMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSVAPDLVSRVE 262

Query: 338 QYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-- 391
            +          F    +  QL+     +V LPS G +II++TEA+  IDVN+GR T   
Sbjct: 263 HFNRADFDGKDAFEAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDVNTGRYTGKG 322

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T    N+EAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L E+L+ DR
Sbjct: 323 GGNLEETVTLNNIEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLNEALENDR 382

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR------ 505
            R QV  +++ GL++M+R+RI + +LE+ +  C +C+G G I     V     R      
Sbjct: 383 TRHQVSEVTSLGLVQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTVDERVEAKAE 442

Query: 506 -SVEEYLLQYTAHNIIVHTHSDVVLY-LLNQKRATIVEYEARFGVSI------------- 550
                +    + +         V +  L+      + +       S+             
Sbjct: 443 ERSRRHQRSNSTNKAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLDDSDLDDVVN 502

Query: 551 -------NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW----- 598
                   ++    +  +     +    +            + A       +        
Sbjct: 503 DKLDEPERILAESTVEPEEGPRRRARRQRQESAADDIAAIAAAAVDIASEEDPDEPSGSS 562

Query: 599 -----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                + E + P+ +  +    +     E++        RRRR+ R  +    A    D 
Sbjct: 563 YVSDFEAEPIAPVVEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRSDHAPKPEDF 622

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLE 680
           + +   + ++            +   E
Sbjct: 623 APVVEEVAETPVKTPARKAPRRNRPSE 649



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 1  MANKMLIDAS----HVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55
          M  +M++       H    T+V VL D+++ E    S+ +  + GNIYL +V  V PS++
Sbjct: 1  MERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSME 60

Query: 56 AAFVDYGGNRHGFLPFLEI 74
          AAF+D G  R+G L   E+
Sbjct: 61 AAFIDIGKGRNGVLYAGEV 79


>gi|89889612|ref|ZP_01201123.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium BBFL7]
 gi|89517885|gb|EAS20541.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium BBFL7]
          Length = 512

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 221/565 (39%), Gaps = 65/565 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I  S   +    + ++ R+ EL  + +  K    +I++AK  +V   L A+FV+
Sbjct: 1   MDKEIII-RSGSTKVDYALTKNGRLVELHQDEDENKFAVSDIFIAKSRKVLSGLNASFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119
            G  + GFL + ++ P Y       +Q L             +  ++   G +T     +
Sbjct: 60  VGYEKDGFLHYHDLGPQYLTQFKFTKQILSGRRKNYALKDIKLEKELEKSGSITDVVAPN 119

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
              +  +      T+   + +                          +Y +     +R  
Sbjct: 120 QPILVQVVKEPISTKGPRLSAE--------------------LSIPGRYVVLVPFSDRIS 159

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           +  +I   E  ++   +   +  AG              I R +        L +  + L
Sbjct: 160 ISQKIEDREEKSRLKRLVKSIKPAGF-----------GVIVRTVAKGKLVAELDQDLQNL 208

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                                                  A             N I R  
Sbjct: 209 ITKWEN--------------------------MCAKLHKANFPSKVMTEVSRTNSIMR-- 240

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
            D++    + I+V  E+   E KD++K + P    IV+ +    P+F + GIE Q+ +  
Sbjct: 241 -DVFNDTYTSIVVDDEEVCSEIKDYLKTIAPHKESIVKYHNPRTPVFEKYGIERQIKTSF 299

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRD 418
              V++    Y+II  TEA+  IDVNSG  + +    EDTAL+TNL AA EIARQLRLRD
Sbjct: 300 GRTVSMSKGAYLIIEHTEAMHVIDVNSGNRSNKANSQEDTALETNLIAASEIARQLRLRD 359

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM + +N + + + +++ + +DRA+ ++   S FGL++++RQR+R  +  
Sbjct: 360 MGGIIVVDFIDMRQAENRKKLYEHMRDEMSEDRAKHKILPPSKFGLIQITRQRVRQEMNI 419

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            T +      G   I++   V   I +   E  L+     I ++ H  V  ++     + 
Sbjct: 420 KTREENPDGNGN-EIQAPILVIYKI-KEELEKHLKNGHKKITLNAHPFVAAFITKGYPSI 477

Query: 539 IVEYEARFGVSINVVIGIELADKLF 563
             ++       I V          +
Sbjct: 478 RSKWFMNHKKWIKVSPRDAYTYLEY 502


>gi|318042660|ref|ZP_07974616.1| ribonucleases G and E [Synechococcus sp. CB0101]
          Length = 688

 Score =  217 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 108/324 (33%), Positives = 171/324 (52%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GR+ +L P+  +G  ISR+  N    
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLTLPGRFLILQPH-GQGVNISRR-INAESE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++RT     ++  +  D E L+R W+ ++  A ++  P L+ 
Sbjct: 140 RNRLRALGVLIKPPGAGLLIRTEAEGVSEELLIDDLEALLRQWEAIQTAAESATPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD Y  D++ I++    G      F+                        
Sbjct: 200 RDEDFIHRILRDHYSPDVARIVLDSADGVSRVNAFLGPDQSQVQVEQHLDSSEIL--EAF 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNYEAATE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G++++DFIDME +++   V +    +++ D AR Q+  IS  GL+E++R
Sbjct: 318 IARQLKLRNIGGVVIIDFIDMESRRDQLQVLEHFTAAMRPDSARPQIAQISELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 88.5 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D+RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDDRVDELVV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G G ++GF+   ++ P
Sbjct: 55 NIGEGEKNGFIHVTDLGP 72


>gi|271968506|ref|YP_003342702.1| ribonuclease E [Streptosporangium roseum DSM 43021]
 gi|270511681|gb|ACZ89959.1| Ribonuclease E [Streptosporangium roseum DSM 43021]
          Length = 922

 Score =  217 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 203/350 (58%), Gaps = 4/350 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P+ 
Sbjct: 505 GEVNFDTAGLEGQPKRIEVALKSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPDG 564

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      +P   GVI+RTA    ++ E+ RD   L   W+
Sbjct: 565 SMTG-ISRKLPDKERTR--LKSILKKVMPENAGVIVRTAAEGASEEELGRDVARLSAQWE 621

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           N++  A ++ AP L+  E +L  R +RD++ +D + ++V+G+  +    ++++ + P  A
Sbjct: 622 NIQRKAKSASAPELLSSEPDLTVRVVRDVFNEDFTSLVVAGDDVWETVDEYVRYVAPHLA 681

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             + ++ED   +F    I+ Q+    + +V LPS G ++I++TEA+  +DVN+G+ T + 
Sbjct: 682 DRLSRWEDGADVFAAYRIDEQIAKAMERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQG 741

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 742 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLENNRDLVLRRLLECLARDRT 801

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           + QV  +++ GL++M+R+R+   +LE+ + VC  C G G   S   V   
Sbjct: 802 KHQVAEVTSLGLVQMTRKRVGQGLLEAFSTVCECCNGRGLHVSTEPVESK 851



 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ D  + E     E  +   GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 448 TQIAVMEDGVLVEHYVNREASQSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV 507

Query: 75  HPD 77
           + D
Sbjct: 508 NFD 510



 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 3/132 (2%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
                  AP   +    V   E   P   +E            E+      +R  RR+  
Sbjct: 49  AAVEQPSAPVATEPETPVVTAEPEAPAVTAEPEP--ATAQPEPETAQETAPKRATRRKAA 106

Query: 640 PATDHHDAGVVSDVSSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
                  A   +  S  +    +   +   EP   T    +   A    +        V 
Sbjct: 107 TTASTAPATTPARRSRAKKAAPEPVAEEAPEPVVETAPEPVAEEAPAPVKRSRTRRKAVQ 166

Query: 699 TPEMESSNSSSD 710
                     +D
Sbjct: 167 QDVPAEPEPVAD 178


>gi|116670939|ref|YP_831872.1| ribonuclease [Arthrobacter sp. FB24]
 gi|116611048|gb|ABK03772.1| ribonuclease, Rne/Rng family [Arthrobacter sp. FB24]
          Length = 1113

 Score =  217 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 212/444 (47%), Gaps = 9/444 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DRQ ++++ +            +    V+     SL     +               +  
Sbjct: 382 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 441

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D      +Q  I+  +K+   +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 442 RGRNAVLYAGEVNWDAVNLEGKQRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPG 501

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RY V +P  S    ISRK+ +    +  +       +P   GVI+RTA    ++ E+  D
Sbjct: 502 RYLVYVPGGSMTG-ISRKLPDVERNRLKR--ILKDRLPEDAGVIVRTAAEGASEEELTHD 558

Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              L   W+ +   A ++      L+Y E +L  + +RD++ +D S++IVSGE+ +   +
Sbjct: 559 INRLRAQWEGIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIE 618

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            ++  + P     + ++     IF    I+ Q+      +V LPS G ++I++TEA+  +
Sbjct: 619 AYVTYVAPDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEAMTVV 678

Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           DVN+G+ T     +E+T  + NLEAAEE+ RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 679 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 738

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           ++ E L +DR + QV  +++ GL++M+R+R+ + +LE   + C  C G G +     V  
Sbjct: 739 RMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDEPVEH 798

Query: 502 SILRSVEEYLLQYTAHNIIVHTHS 525
              R       ++           
Sbjct: 799 ---RRANTVAAEHHVQRTEAQQPP 819



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           + +I     +  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G 
Sbjct: 383 RQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 442

Query: 64  NRHGFLPFLEIHPD 77
            R+  L   E++ D
Sbjct: 443 GRNAVLYAGEVNWD 456


>gi|184200774|ref|YP_001854981.1| putative ribonuclease [Kocuria rhizophila DC2201]
 gi|183581004|dbj|BAG29475.1| putative ribonuclease [Kocuria rhizophila DC2201]
          Length = 1145

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 114/348 (32%), Positives = 198/348 (56%), Gaps = 6/348 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 400 GEVDWDAAEMGHKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGG 459

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++  K       +P G GVI+RTA    ++ E+  D   L   W+
Sbjct: 460 SMTG-ISRKLPDVERQRLKK--ILKDRLPEGAGVIVRTAAEGASETELTNDINRLRSQWE 516

Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            ++E A ++      L+Y E +L  + +RD++ +D + ++V GE+ +   + ++  + P 
Sbjct: 517 QIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWDNIEAYVTYVAPD 576

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
               ++++ +   +F    +E Q+    + +V LPS G ++I++TEA+  +DVN+G+ T 
Sbjct: 577 LLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTG 636

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +D
Sbjct: 637 SGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRD 696

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           R + QV  +++ GL++M+R+R+ + +LE  ++ C  C G G +     
Sbjct: 697 RTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRGVLVHDHP 744



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
            ++ VL D  + E       +  + GN+Y+ KV  V PS++AAFVD G  R+  L   E+
Sbjct: 343 IQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 402

Query: 75  HPD 77
             D
Sbjct: 403 DWD 405


>gi|258651734|ref|YP_003200890.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233]
 gi|258554959|gb|ACV77901.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233]
          Length = 1080

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 118/354 (33%), Positives = 194/354 (54%), Gaps = 10/354 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  + +   +L Q+ K+  G+KGA +TT +SL GR+ V +P  
Sbjct: 436 GEVNWDAAGLGGKARRIESALSSGDTILAQVSKDPVGHKGARLTTQISLPGRFLVYVPGG 495

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++   +      VP   GVI+RTA    ++ E+ RD E L   W+
Sbjct: 496 G-ATGISRKLPDTERKR--LKAILDRIVPEDAGVIIRTAAEGVSEEELARDVERLKAQWE 552

Query: 274 NVRELAL-NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            +   A     AP L+Y E   + + +RDL+  DI+ ++V G+ G       +   + + 
Sbjct: 553 EISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDTVWGPVSDYVNAV 612

Query: 333 ARI-----VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
           A       VR   D   +F    I+ Q+    + +V LPS G ++I++TEA+  +DVN+G
Sbjct: 613 APELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVIDRTEAMTVVDVNTG 672

Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           + T     +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E+
Sbjct: 673 KYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRELVMRRLTEA 732

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
           L +DR R QV  +++ GL++M+R+R+ + ++E+ ++ C +C G G +  +  +A
Sbjct: 733 LGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIVLHEMPLA 786



 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           +V +L D  + E          + G+++L KV  V PS++AAFVD G  R+  +   E++
Sbjct: 380 QVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIGRGRNAVIYAGEVN 439

Query: 76  PD 77
            D
Sbjct: 440 WD 441


>gi|324999856|ref|ZP_08120968.1| ribonuclease, Rne/Rng family protein [Pseudonocardia sp. P1]
          Length = 804

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 119/355 (33%), Positives = 200/355 (56%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ + +   +LVQ+ K+  G+KGA +TT +SLAGR+ V +P+ 
Sbjct: 300 GEVNWDAAGLNGKARKIEQALSSGDQVLVQVTKDPVGHKGARLTTQISLAGRFLVYVPSG 359

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++ LKE+ + +      GVI+RTA    +   ++RD   L   W+
Sbjct: 360 GAAG-ISRKLPDTERKR-LKEMLKEIVPS-EAGVIIRTASEGVSHDALERDVRRLQAQWE 416

Query: 274 NVRELALNS-----VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            V+E +  +      AP L+YEE +++ + +RD + +D S++IVSG   +     +++ +
Sbjct: 417 VVKEKSEKTGPGAPKAPTLLYEEPDMLVKVVRDQFNEDFSKLIVSGADAWDTVSGYVEHV 476

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
                  + ++  P  +F    I+ QL      +V LPS G ++I++TEA+  +DVN+G+
Sbjct: 477 ASELTERMHRHTGPSDVFTEYRIDEQLLKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGK 536

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + NLEAAEE+ RQLRLRD+ G+IVVDFIDM  + N   V ++L E L
Sbjct: 537 FTGSGGNLEETVTRNNLEAAEEVVRQLRLRDIGGIIVVDFIDMVLEANRDLVLRRLTECL 596

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R+R+   +LE  +  C +C+G G + S       
Sbjct: 597 ARDRTRHQVAEVTSLGLVQMTRKRVGGGLLEHFSTPCEHCRGRGVVISTDPAEQH 651



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQ-IKGNIYLAKVTRVEPSLQAAFVDY 61
            +M+I     + T + VL D+ + E           + GNIYL +V  V PS++AAFVD 
Sbjct: 231 RQMVI-RQLADRTEIGVLEDSVLVEHFITGGGSGSSMVGNIYLGRVQNVLPSMEAAFVDI 289

Query: 62  GGNRHGFLPFLEIHPD 77
           G  R+  L   E++ D
Sbjct: 290 GRGRNAVLYAGEVNWD 305


>gi|227833691|ref|YP_002835398.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975]
 gi|262184697|ref|ZP_06044118.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975]
 gi|227454707|gb|ACP33460.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975]
          Length = 1062

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 149/615 (24%), Positives = 252/615 (40%), Gaps = 49/615 (7%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   ++  +K+   +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 425  GDIDWRALGIGGRSRKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYVPG- 483

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++   +      +P   G I+RTA  + ++ +I  D   L  LW+
Sbjct: 484  GRSAGISRKLPAPERKR--LKGILERVIPGDGGAIIRTAAENVSEEDIASDVNRLHSLWE 541

Query: 274  NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++   A +  A        +YEE +L+ + +RDL+ +D S ++V G++ Y     ++  +
Sbjct: 542  DISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDSM 601

Query: 329  MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
                A  V +Y+         F    I+ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 602  AHDLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVIDV 661

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM   +N   V ++L
Sbjct: 662  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRRL 721

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            KE+L +DR R QV  +++ GL++M+R+R+ + ++E+ +  C  C G G I  +  V    
Sbjct: 722  KEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGIIIHEYPVDEDP 781

Query: 504  LRS----VEEYLLQYTAHNIIVHTHSDVVLYLLNQK---------------RATIVEYEA 544
                         +  A       H   V    + +               R      E 
Sbjct: 782  EEENSKPQRRGRKERRAPQRDPKKHPAAVRMHRDDEDAAAEHETATEKETSRDDDSSLEE 841

Query: 545  RFGVSINVVIGIELADKL-----FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
                ++ VV   E          + + +    +            S+ P          Q
Sbjct: 842  LV-ANVVVVDEDEPETPDSASIGYAVAESLDAKRSKPKPKSKAKRSRKPRRATRTFREPQ 900

Query: 600  DEAL-----------LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
             E                  +E     +     EE+     K  RR+RR R  +      
Sbjct: 901  REETSEGSRAKHGKRDEHADAEKASPQRSEQTYEEAVEAFEKSPRRKRRTRGNSRSDIRP 960

Query: 649  VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               D +  +    D+     +          E G +                +M  S S+
Sbjct: 961  KREDFAQDETSAKDAQLATSKKEAKAERKGAEPGENTSVRATRSRGRRRVVRKMAQSQST 1020

Query: 709  SDPIVKKTRWWKRRK 723
                 ++     +R+
Sbjct: 1021 PASNDREQGSEAQRR 1035



 Score = 87.7 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    +E      GNIYL +V  V PS++AAFVD G  R+G L   +I
Sbjct: 368 TQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI 427


>gi|226307282|ref|YP_002767242.1| ribonuclease [Rhodococcus erythropolis PR4]
 gi|226186399|dbj|BAH34503.1| putative ribonuclease [Rhodococcus erythropolis PR4]
          Length = 1099

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 140/554 (25%), Positives = 239/554 (43%), Gaps = 42/554 (7%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +          I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 526  GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 584

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272
                 ISRK+ +   ++ LKEI R +      GVI+RTA    ++ E+ RD   L   W 
Sbjct: 585  GTSTGISRKLPDTERKR-LKEILRDIVPA-DAGVIIRTASEGVSEEELARDVTRLQAQWA 642

Query: 273  ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
                         S  P  +YEE +++ + IRDL+ +D S++++ GEK +   ++++  +
Sbjct: 643  GIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFNEDFSKLVIEGEKAHTTVENYINSV 702

Query: 329  MPSYARIVRQYEDP--HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
             P     + +Y       +F    I+ QL      +V LPS G ++I++TEA+  +DVN+
Sbjct: 703  APDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 762

Query: 387  GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
            G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E
Sbjct: 763  GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 822

Query: 446  SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
             L +DR R QV  +++ GL++M+R+++ + ++E+ +  C +C G G I     V +    
Sbjct: 823  CLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHSEPVEVKSSD 882

Query: 506  SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                      + +                KR                      + +    
Sbjct: 883  DGGSRSGSQRSESGTS----------RKNKRG---------------RGDKSPSTE---- 913

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
              G    A              P           D+  +     ES  D       ++++
Sbjct: 914  SNGQEAPAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSIES--DSTGTSSGDDAS 971

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                +++ R      AT+ HD  VV   +   + +D+        +           +  
Sbjct: 972  KSADRQQDRPIDTPAATERHDVPVVDSAAEEVSAVDNESAAASTEAAPRGRRRSRRASRA 1031

Query: 686  FTENYDVSIPPVST 699
             +     + P V T
Sbjct: 1032 ASAPVAEAAPEVGT 1045



 Score = 97.0 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E    +     + GN+YL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 469 TQVAVLEDGVLVEHFVTNSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 528

Query: 75  HPD 77
           + +
Sbjct: 529 NWE 531


>gi|145296333|ref|YP_001139154.1| hypothetical protein cgR_2248 [Corynebacterium glutamicum R]
 gi|140846253|dbj|BAF55252.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1021

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 141/576 (24%), Positives = 243/576 (42%), Gaps = 52/576 (9%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G           R   I++ +K    +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 342 GEVDWKAAGLGGRGRRIEQALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPG- 400

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISRK+  P  ++ LKEI   +    G G I+RTA    ++  I  D   L  LW+
Sbjct: 401 GRSAGISRKLPGPERKR-LKEILGRVVPAQG-GTIIRTAAEGVSEENIAADVNRLHTLWE 458

Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++E               +YEE +++ + IRDL+ +D + +IV G++ +   + +++ +
Sbjct: 459 QIKERTAKEKKSRGSKPITMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSV 518

Query: 329 MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
            P     V  ++         F    +  QL+     +V LPS G +II++TEA+  IDV
Sbjct: 519 APDLVSRVEHFDRADFDGKDAFEAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDV 578

Query: 385 NSGRSTR--EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           N+GR T      +E+T    N+EAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++
Sbjct: 579 NTGRYTGKGGGNLEETVTLNNIEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRR 638

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           L E+L+ DR R QV  +++ GL++M+R+RI + +LE+ +  C +C+G G I     V   
Sbjct: 639 LNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTV 698

Query: 503 ILR-------SVEEYLLQYTAHNIIVHTHSDVVLY-LLNQKRATIVEYEARFGVSI---- 550
             R           +    +           V +  L+      + +       S+    
Sbjct: 699 DERVEAKAEERSRRHQRSNSTKKAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLD 758

Query: 551 ----------------NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
                            ++    +  +     +    +            + A       
Sbjct: 759 DSDLDDVVNDKLDEPERILAESTVEPEEGPRRRARRQRQKSAADDIAAIAAAAVDIASEE 818

Query: 595 ECVW----------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
           +             + E + P+ +  +    +     E++        RRRR+ R  +  
Sbjct: 819 DPDEPSGSLYVSDFEAEPIAPVVEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRS 878

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             A    D + +   + ++            +   E
Sbjct: 879 DHAPKPEDFAPVVEEVAETPVKTPARKAPRRNRPSE 914



 Score = 87.7 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 1   MANKMLIDAS----HVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55
           M  +M++       H    T+V VL D+++ E    S+ +  + GNIYL +V  V PS++
Sbjct: 266 MERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSME 325

Query: 56  AAFVDYGGNRHGFLPFLEI 74
           AAF+D G  R+G L   E+
Sbjct: 326 AAFIDIGKGRNGVLYAGEV 344


>gi|126654720|ref|ZP_01726254.1| Ribonuclease E and G [Cyanothece sp. CCY0110]
 gi|126623455|gb|EAZ94159.1| Ribonuclease E and G [Cyanothece sp. CCY0110]
          Length = 669

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 141/549 (25%), Positives = 236/549 (42%), Gaps = 29/549 (5%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  +SL GRY VLMPN  KG  +SR+I N  +R
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMPN-GKGVNLSRRIRNDDER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E+L R W++++  A ++ AP L+ 
Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQRQWESIQVQATSTRAPSLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346
            + + I+R +RD+Y  D++ I+V    G +  K  +              +         
Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPSGVKRVKHHLMNWSGGRPPEGVLIDHHRESMSVL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAVREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G+I+VDFIDM+ +++   + +   ++LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKVDKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   + C  C G G++      +  ++                  T   
Sbjct: 380 LTRKRQGKNIYELFGQPCPQCGGLGHLAHLPGES-QLVALESSANPTLPIPAPTPVTPKP 438

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
           V   +     +    +E                      ++ +     +   H      Q
Sbjct: 439 VEKPVEVNDSSWDSSFE----------------------DEDNDNSDELELLHHPSYQEQ 476

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
             + +       Q   L+    S    +   +   +++     + RR R  R    +   
Sbjct: 477 NSNANNRRRRRRQTPNLVIKEDSPKPSNNGGSKEGDDNNESSYENRRERLPRHLRREESP 536

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
              VS V       D    M + P    +    +  +   +      +   +    E+S 
Sbjct: 537 VEKVS-VEMTPLEQDVYALMGISPLVRLDKEFKDPKSVVVSVKSPDGVERKTIELTETST 595

Query: 707 SSSDPIVKK 715
              +   K+
Sbjct: 596 PEVETPAKE 604



 Score = 71.2 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I   H       V  +++++EL        Q   +I+L  V  V P + AAFV+
Sbjct: 1  MPKQIIIAEKHHI---AAVFWEDQIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAFVN 55

Query: 61 YG-GNRHGFLPFLEIHP 76
           G   R+GF+   ++ P
Sbjct: 56 IGDAERNGFIHVTDLGP 72


>gi|325068506|ref|ZP_08127179.1| ribonuclease, Rne/Rng family protein [Actinomyces oris K20]
          Length = 844

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 142/587 (24%), Positives = 242/587 (41%), Gaps = 30/587 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++ + +   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 256 GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 315

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+ +    +  K       VP   GVI+RTA    T+ ++  D E L+  W+
Sbjct: 316 TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGATQEQLTADVERLVAQWE 372

Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + +        +  AP L+  E  L  R IRD++ +D  ++IVSG+  +     ++  +
Sbjct: 373 AIDKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLIVSGDNTWSTISQYIDEV 432

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P  +  +  +  P  +F    ++ QL      +V LPS G ++I++TEA+  IDVN+GR
Sbjct: 433 SPDLSERLEHWVGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 492

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L
Sbjct: 493 FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 552

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS----- 502
            +DR R QV  +++ GL++M+R+R+   ++E+ +  C +CKG G+I     V        
Sbjct: 553 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQQIDMS 612

Query: 503 ----------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
                       R   E                +      ++            G  +  
Sbjct: 613 ASASRGGGRSRGRKNREEQATGGGKKETKKDSQETKGSKSSKGSGRGKAL---AGRDVAA 669

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI--PKSE 610
                + D+     +G+  Q             Q        +   +   +       + 
Sbjct: 670 SPESGVDDEARAAVRGALAQIAAAAEQAHKDSQQEGQDPHEGQGAVEVAGVSNSVHDAAG 729

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV-VSDVSSIQNVIDDSFDMYME 669
           + ED++     E S  +   +  + R R+ A                            E
Sbjct: 730 AAEDVEPVGGQEVSDSLAEDKPVKTRSRKAADKKSAKKTGEKKGDKADKKSGRKTGKKAE 789

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               T          G      V   PV      ++  S+ P  + +
Sbjct: 790 KKVATTSEDPAEPQPGEASAEPVEEKPVRRTRRRATAKSAAPSPENS 836



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ VL D  + E       +  + GN+Y+ +V  V PS++AAFVD G  R+  L   E++
Sbjct: 200 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 259

Query: 76  PD 77
            D
Sbjct: 260 WD 261


>gi|116075703|ref|ZP_01472962.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9916]
 gi|116067018|gb|EAU72773.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9916]
          Length = 672

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/324 (33%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P + +G  ISR+  +    
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRR-ISAEGE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++RT     ++  +  D E L+R W+ +++ A ++V P L+ 
Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEAEGVSEELLIDDLETLLRQWEAIQKAAESAVPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D+  +++         +DF+     +    V  + +P  I    
Sbjct: 200 RDEDFIHRILRDHAGPDLVRVVLDDPGAVDRVRDFLGQDDNNVL--VEAHSEPAEILEHF 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I+VDFIDM+ +++   + +    +++ D AR Q+  +S  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIVDFIDMDSRRDQLQLLEHFTAAIRDDAARPQIAQLSELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIII----AEQLRIAAVLSDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|317968684|ref|ZP_07970074.1| ribonucleases G and E [Synechococcus sp. CB0205]
          Length = 467

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 190/366 (51%), Gaps = 5/366 (1%)

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQILLVQIVKE 187
            + E     I +A  ++    ++      +  P + K+    I E+++ RQ +LVQ++KE
Sbjct: 40  GTIENVLPGIDAAFVNIGEGEKNGFIHVTDLGPLRLKKGTVGITELLEPRQKVLVQVMKE 99

Query: 188 ERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGV 247
             G KG  +T  L+L GR+ VL P+  +G  ISR+IT   +R  L+     L  P G G+
Sbjct: 100 PTGTKGPRLTGNLTLPGRFLVLQPH-GQGVNISRRITAESERNRLRA-LGVLIKPPGAGL 157

Query: 248 ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDI 307
           ++RT     ++ ++  D E L+R W+ ++  A  +  P L+  + + I R +RD Y  ++
Sbjct: 158 LIRTEAEGISEEQLIDDLEALLRQWEAIQTAAEAATPPVLLNRDDDFIHRILRDHYTPEL 217

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
           + I+V           F+         +V  + +P  I     +   +         LPS
Sbjct: 218 ARIVVDAPDAVARVNTFLS--SDHQQVLVEHHSEPTEILEHYKVNAAIRDALTPRADLPS 275

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            GYVII  TEAL  IDVNSG  TR     +T L TN EAA EIARQL+LR++ G++++DF
Sbjct: 276 GGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNYEAATEIARQLKLRNIGGVVIIDF 335

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDME +++   + +     ++ D AR Q+  IS  GL+E++R+R   ++ E   + C  C
Sbjct: 336 IDMESRRDQLQLLEHFTSEVRSDSARPQIAQISELGLVELTRKRQGQNIYELFGRACPSC 395

Query: 488 KGAGYI 493
            G G++
Sbjct: 396 GGLGHV 401



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  +  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDERVDELVV--AQGRYQIGDVYLGTIENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G G ++GF+   ++ P
Sbjct: 55 NIGEGEKNGFIHVTDLGP 72


>gi|158334868|ref|YP_001516040.1| ribonuclease E [Acaryochloris marina MBIC11017]
 gi|158305109|gb|ABW26726.1| ribonuclease E [Acaryochloris marina MBIC11017]
          Length = 674

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/616 (23%), Positives = 247/616 (40%), Gaps = 27/616 (4%)

Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
                  +       +V  I     E     I +A  ++     +      +  P + KR
Sbjct: 18  SEDQIQELIVATGSHQVGDIYLGIVENVLPGIDAAFVNIGDAERNGFIHVSDLGPVRLKR 77

Query: 167 QYC-IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
               I E++  +Q +LVQI+KE  G KG  +T  +SL GRY VLMP + +G  +SR+I  
Sbjct: 78  NSGAITELLAPQQKVLVQIMKEPTGTKGPRLTGNISLPGRYLVLMP-SGRGVNLSRRIR- 135

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             D ++       L  PAGMG+++RT      +  I  D E L R W++V++ A ++ AP
Sbjct: 136 AEDERSRLRALGILIKPAGMGLLVRTEAEGVAEEAIIEDLELLQRQWESVQQQAASTRAP 195

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV----RQYED 341
            L+  + + I+R +RD+Y  +++ I+V    G +  K  +     +          Q+ +
Sbjct: 196 ALLDRDTDFIQRVLRDVYSSNVNRIVVDSTPGLKRVKQHLVNWNNTNKLPQGVLVDQHRE 255

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              I     +   +    +  V LPS GY+II +TEAL  +DVNSG  TR     +T L 
Sbjct: 256 STSILEYFRVNAAIREALKPRVDLPSGGYIIIEKTEALTVVDVNSGSFTRSATARETVLW 315

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TN EAA EIARQLRLR++AG+I++DFIDM+ +++   V +   ++LK D+AR Q+  ++ 
Sbjct: 316 TNCEAAAEIARQLRLRNIAGVIIIDFIDMDSRRDQLQVLEHFNKALKADKARPQIAQLTE 375

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL+E++R+R   ++ E     C  C G G++      A   +  VE       +     
Sbjct: 376 LGLVELTRKRQGQNIYELFGTPCPACSGLGHLVHLPGEAAPTVGEVEWSEPSKPSPTSTS 435

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                 +   LN                I++    +L       E               
Sbjct: 436 GVPLPGISANLND--------------QIHLDPSDDLQ------ELDLTNHPSYQERGNR 475

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
               ++   D           +     S+S      N  +  ++       R R R    
Sbjct: 476 RRRRRSRLGDNLSRESLSPRLVRNGSASDSKPVKSTNDTNGSTSSKSGGNERSRGRSSTR 535

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                   V  V+      D    M + P+ +    + +  +                  
Sbjct: 536 QRQDTPPEVISVTMTPEEQDIYAFMGISPTVLFPGEIKKPKSAIVEILAPGETSSTPNTT 595

Query: 702 MESSNSSSDPIVKKTR 717
                +    + K T+
Sbjct: 596 ATKVITKELVVAKDTK 611



 Score = 88.1 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  V  +++++EL   +       G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHRIAAVFSEDQIQELIVATGSH--QVGDIYLGIVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDAERNGFIHVSDLGP 72


>gi|284049151|ref|YP_003399490.1| ribonuclease, Rne/Rng family [Acidaminococcus fermentans DSM 20731]
 gi|283953372|gb|ADB48175.1| ribonuclease, Rne/Rng family [Acidaminococcus fermentans DSM 20731]
          Length = 476

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 134/392 (34%), Positives = 211/392 (53%), Gaps = 7/392 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
              Q+LLVQ+VK+ RG+KG AVT  ++L GRY VL P  S+  ++SRKI+    RK L++
Sbjct: 76  SEGQMLLVQVVKDARGSKGPAVTRDITLPGRYVVLEPYGSR-VSLSRKISCKTKRKELRD 134

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
            AR L     MG++LRTA A   + EI+ D E L+R WD +   +     P L+Y E +L
Sbjct: 135 WARELLPDH-MGLVLRTAAAHAEEDEIRADLEQLLRNWDVLVRRSKVGRGPQLLYRELDL 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             R +RD     +  IIV  EK  R  ++ ++ +       V+ Y     +F    ++  
Sbjct: 194 AIRLVRDYVTDRVERIIVDEEKTCRRLQEMLRDMGLPGI-QVKLYRGKEDLFTFYRLDED 252

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++SL    V LP  GY++I+ TEA+  IDVNSG+ +     + T++ TN EAA EIARQL
Sbjct: 253 IESLSDRVVWLPGGGYLVIDCTEAMTVIDVNSGKFSTGADRDATSMATNREAAREIARQL 312

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRD+ G+IV DFIDM+ ++    + + LK+    D+ + +V  ++   L+EM+R + R 
Sbjct: 313 RLRDIGGIIVADFIDMDREEEQEEILQILKKEFASDKMKPKVIDLTQLNLVEMTRMKARK 372

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLN 533
           ++       C  C G+G + S  +V + I R +    LQ   +H +++  H  V  +L  
Sbjct: 373 NLAGILYTTCPLCGGSGRVESPETVYVEIRRRLRSTFLQGKMSHALLLTVHPLVYSWLRQ 432

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           Q    + + E  F  S+ +     L   +F +
Sbjct: 433 QG---LRDMEQEFHCSLKLASDPSLEVGVFTL 461



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 9  ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
          +   EETR+  + D+++ +   E      + GN+Y A+V  V P +QAAFVD    ++GF
Sbjct: 7  SVRPEETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDLNTGKNGF 66

Query: 69 L 69
          L
Sbjct: 67 L 67


>gi|325963637|ref|YP_004241543.1| ribonuclease, Rne/Rng family [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469724|gb|ADX73409.1| ribonuclease, Rne/Rng family [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 1197

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 120/417 (28%), Positives = 210/417 (50%), Gaps = 6/417 (1%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DRQ ++++ +     +      +    V+     SL     +               +  
Sbjct: 454 DRQMIVRQRDDRIQIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 513

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D      +Q  I+  +K+   +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 514 RGRNAVLYAGEVNWDAVNLEGKQRRIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPG 573

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RY V +P  S    ISRK+ +    +  + +   L      GVI+RTA    ++ E+  D
Sbjct: 574 RYLVYVPGGSMTG-ISRKLPDVERNRLKRILKDRLPEQ--AGVIVRTAAEGASEEELTHD 630

Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              L   W+ +   + ++      L+Y E +L  + +RD++ +D S++IVSGE+ +   +
Sbjct: 631 INRLRAQWEGIESQSQSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIE 690

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            ++  + P     + ++     IF    I+ Q+    + +V LPS G ++I++TEA+  +
Sbjct: 691 AYVTYVAPDLVGRLEKWTKDQDIFSAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVV 750

Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           DVN+G+ T     +E+T  + NLEAAEE+ RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 751 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 810

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           +L E L +DR + QV  +++ GL++M+R+R+ + +LE   + C  C G G +     
Sbjct: 811 RLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDDP 867



 Score = 98.1 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           + +I     +  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G 
Sbjct: 455 RQMIVRQRDDRIQIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 514

Query: 64  NRHGFLPFLEIHPD 77
            R+  L   E++ D
Sbjct: 515 GRNAVLYAGEVNWD 528


>gi|16329250|ref|NP_439978.1| ribonuclease E [Synechocystis sp. PCC 6803]
 gi|6094111|sp|P72656|RNE_SYNY3 RecName: Full=Ribonuclease E homolog; Short=RNase E
 gi|1651730|dbj|BAA16658.1| ribonuclease E [Synechocystis sp. PCC 6803]
          Length = 674

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/327 (33%), Positives = 177/327 (54%), Gaps = 5/327 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  +S+ GRY VLMP   +G  +SR+  N  + 
Sbjct: 82  ISELLSPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMVLMP-YGRGVNLSRR-INREEE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           ++       L  P GMG+++RT      +  I  D E L + W+ V++ A+   AP L+ 
Sbjct: 140 RSRLRALAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQKQWELVQQQAMTRSAPMLLD 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + IKR +RD+Y  +++ I+V    G +  K  +             +  + +   I 
Sbjct: 200 RDDDFIKRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQGRLPEGVLIDCHRESLSIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  T      +T L TN EA
Sbjct: 260 EYFRVNATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTHSANSRETVLWTNYEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQL+LR++ G+I++DFIDM+  K+   + +     L+ D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCLETDKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI 493
           ++R+R   ++ E   + C  C G G++
Sbjct: 380 LTRKRQGQNLYELFGQPCPECGGLGHL 406



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I   H    +V  +  +D +++EL   +    Q  G+IYL  V  + PS+ AAF
Sbjct: 1  MPKQIVIAEKH----QVAAVFWKD-QIQELVVSTGS--QQVGDIYLGLVDNILPSIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          ++ G   ++GF+   ++ P
Sbjct: 54 INIGDTEKNGFIHVSDLGP 72


>gi|256396379|ref|YP_003117943.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928]
 gi|256362605|gb|ACU76102.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928]
          Length = 1334

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 201/356 (56%), Gaps = 6/356 (1%)

Query: 166  RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +   I+ V+K+ Q +L Q+ K+  G+KGA +T+ +SL GRY V +P       ISRK+  
Sbjct: 763  QAKRIESVLKSGQAVLTQVTKDPIGHKGARLTSQISLPGRYLVYVP-EGTMTGISRKLPE 821

Query: 226  PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS--V 283
                +   +      VP   GVI+RTA    T+ E++RD E L   W+ ++  A  S   
Sbjct: 822  NERNR--LKTILKAVVPEHAGVIVRTAAEGATEDELRRDVERLSAQWEEIQRKAKTSAGS 879

Query: 284  APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
            AP L+Y E +L  R +RD++ +D S+++VSG++ +   ++++  + P  A  + ++    
Sbjct: 880  APTLLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAWDTIREYVGGVAPDLAPRLERWTSEQ 939

Query: 344  PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
             IF    ++ QL      +V LPS G ++I++TEA+V IDVN+G+ T     +E+T  + 
Sbjct: 940  DIFAVHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGSGGNLEETVTRN 999

Query: 403  NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
            N+EAAEEI RQLRLRDL G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 1000 NIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSL 1059

Query: 463  GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            GL++M+R+R+   +LE+ ++ C  C G G +     V        E+      +  
Sbjct: 1060 GLIQMTRKRVGQGLLEAFSETCDKCNGRGVLVHMEPVPHGHGHGSEDADRDGRSQQ 1115



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E            GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 694 TQIGVLEDGVLVEHYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV 753


>gi|308177601|ref|YP_003917007.1| ribonuclease [Arthrobacter arilaitensis Re117]
 gi|307745064|emb|CBT76036.1| putative ribonuclease [Arthrobacter arilaitensis Re117]
          Length = 946

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 138/600 (23%), Positives = 247/600 (41%), Gaps = 47/600 (7%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    DV         I+  +K    +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 313 GEVNWDVAALEGAPRRIENALKAGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGG 372

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++  K       +P   GVI+RTA    ++ E+  D   L   W+
Sbjct: 373 SMTG-ISRKLPDVERQRLKK--ILKDHLPENAGVIVRTAAEGASEEELTNDINRLRAQWE 429

Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            + E A ++      L+Y E +L  + +RD++ +D +++IVSGE  +   + ++  + P 
Sbjct: 430 GIEEQANSTKTLAPELLYSEPDLTIKVVRDVFNEDFTKLIVSGEHAWDTIEAYVMYVAPD 489

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
               + ++E    IF    ++ Q+      +V LPS G ++I++TEA+  IDVN+G+ T 
Sbjct: 490 LMGRLEKWEAEEDIFTNFRVDEQIAKALDRKVFLPSGGSLVIDRTEAMTVIDVNTGKFTG 549

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               +E+T  + NLEAAEE+ RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +D
Sbjct: 550 SGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRD 609

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS------------ 498
           R + QV  +++ GL++M+R+R+ + +LE   + C +C GAG I                 
Sbjct: 610 RTKHQVAEVTSLGLIQMTRKRMGTGLLEVFGEECEHCAGAGVITHDEPVETRKTFNSAGE 669

Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK----RATIVEYEARFGVSINVV 553
                          +            +    +  +K    R  +    A   +     
Sbjct: 670 QHTKKFNDKPSRNSRRRRGGEKDEAKPVEKKEPVSEEKDEATRHALANIAAASHLDAAAD 729

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW--------------- 598
             + +  +   + K     +          ++  P   ++ E                  
Sbjct: 730 NAVSIDGEQIPVTKAQASDSEAAAVTLEALEAALPGKGESSEEQDGSRKPRRRSRSRGRN 789

Query: 599 ----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-----AGV 649
               ++        S +LE        + S    + R+R RR  RP            G+
Sbjct: 790 RNQLEESTSGNDEASATLEQPAAPGPEQASKSEEQPRKRSRRASRPQAAAQQDQPVITGL 849

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
               +S     + S  +    +               +     +    +   + +  S++
Sbjct: 850 AMPAASAPAAAETSTAVSAPVAAPAATTQNSTKPKRRSRRATSAQGDATAEVLVAEVSAA 909



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             KM I     +  ++ VL D  + E       +  + GN+Y+ KV  V PS++AAFVD 
Sbjct: 244 ERKM-IVRQREDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYVGKVQNVLPSMEAAFVDI 302

Query: 62  GGNRHGFLPFLEIHPD 77
           G  R+  L   E++ D
Sbjct: 303 GRGRNAVLYAGEVNWD 318


>gi|254430473|ref|ZP_05044176.1| ribonuclease E [Cyanobium sp. PCC 7001]
 gi|197624926|gb|EDY37485.1| ribonuclease E [Cyanobium sp. PCC 7001]
          Length = 688

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 115/324 (35%), Positives = 184/324 (56%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P+  +G TISR++    +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVTISRRVNGDNER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT     ++  +  D E L+R W+ ++  A  +  P L+ 
Sbjct: 141 NRLRA-LGVLIKPPGAGLLVRTEAEGVSEELLIEDLESLLRQWEAIQTAAETASPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RDLY +++  ++V   +G   AK F+     +    V  ++ P  I    
Sbjct: 200 RDEDFIHRILRDLYSQELVRVVVDSPEGVSRAKAFLGADHSNVL--VEAHDAPSDILEAY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVSAAIHDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G++V+DFIDME +++   V +   ++++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVVVIDFIDMESRRDQLQVLEHFTQAVRDDAARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 87.7 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLNDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHITDLGP 72


>gi|159028468|emb|CAO87275.1| rne [Microcystis aeruginosa PCC 7806]
          Length = 724

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 228/486 (46%), Gaps = 16/486 (3%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  ++L GRY VLMPN  +G  +SR+I +  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGNKGPRLTGNVTLPGRYLVLMPN-GRGVNLSRRIRSEDER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E+L + W++++++A++S AP L+ 
Sbjct: 141 SRLRA-LGILVKPAGMGLLVRTEAEGKAEEAIIEDLEFLQKQWESIQQMAVSSRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ---YEDPHPIF 346
            + + I+R +RD+Y  D++ I+V      +  K  +       A        + +  PI 
Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPMAVKRVKQQLTNWGGGKALEGVYIDSHRETQPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAIREALKLRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G++VVDFIDM+ +++   + +   ++LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVVVVDFIDMDSRRDQLKLLELFNKALKSDKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   K C +C G G++        +I               +I  T++ 
Sbjct: 380 LTRKRQGKNIYELFGKTCDHCGGLGHLAHLPGEGSAIALETPTLSRGEKETLVIAPTNTK 439

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
           V   L ++   ++   E    V           +           Q   +   +    S+
Sbjct: 440 V---LPDKSAPSVAAAEPYLEVFSEFEAEENAQEMDLSFHPNYQEQVNNSRRRRRRRPSE 496

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
               ++  E    +     I          ++          R  R  +R    +T  + 
Sbjct: 497 LLLKEERGEKASTNGVNNEIE--------PESEPQRLEEKRERPARLSKRGEDASTAKNI 548

Query: 647 AGVVSD 652
                +
Sbjct: 549 PVTERE 554



 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I     E+  +  +   D +++EL        Q   +IYL  V  V P + AAF
Sbjct: 1  MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVADIYLGLVENVIPGIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          V+ G   R+GF+   ++ P
Sbjct: 54 VNIGDAERNGFIHVTDLGP 72


>gi|291302927|ref|YP_003514205.1| ribonuclease Rne/Rng family [Stackebrandtia nassauensis DSM 44728]
 gi|290572147|gb|ADD45112.1| ribonuclease, Rne/Rng family [Stackebrandtia nassauensis DSM 44728]
          Length = 717

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 119/349 (34%), Positives = 198/349 (56%), Gaps = 4/349 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++ +     +LVQ+ K+  G+KGA +T++++L+GR+ V +P+ 
Sbjct: 313 GEVNWDRTGLSGRTRTIEQAMNAGDSVLVQVTKDPVGHKGARLTSHIALSGRHLVYVPH- 371

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   R+ L+   + L    G GVI+RTA       +++RD   L   W+
Sbjct: 372 GNASGISRKLPDSERRR-LRSTLKKLVPE-GAGVIVRTAAEGADTDDLERDIARLQSEWE 429

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +   A    AP L++ E +L+ R +RD++ +D +E+IV  +  Y E + ++  + P   
Sbjct: 430 AIEAKAAKGGAPALLHAEPDLLVRVVRDVFNEDFNEVIVDDDAAYAEVEKYLSSVSPDLV 489

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             ++++     IF    ++ QL      +V LPS G ++I++TEA+  IDVN+G+ T   
Sbjct: 490 SRLKRHTGTGDIFAEQRVDEQLLKALDRKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGAG 549

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 550 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRT 609

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           + QV  I++ GL++M+R+R+   +LE+ ++ C +CKG G I        
Sbjct: 610 KHQVTEITSLGLVQMTRKRVGQGLLEAFSEPCEHCKGRGVIVDTDLSGN 658



 Score = 99.3 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%)

Query: 6   LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
           L+   H + T++ VL D+ + E        + + GN+YL KV  + PS++AAF+D G  R
Sbjct: 247 LVVRGHGDRTQIAVLEDDLLVEHFVTRAGGQGMAGNVYLGKVQNILPSMEAAFIDIGRGR 306

Query: 66  HGFLPFLEIHPD 77
           +  L   E++ D
Sbjct: 307 NAVLYAGEVNWD 318


>gi|295395000|ref|ZP_06805212.1| ribonuclease G and E [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972159|gb|EFG48022.1| ribonuclease G and E [Brevibacterium mcbrellneri ATCC 49030]
          Length = 924

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 125/485 (25%), Positives = 228/485 (47%), Gaps = 9/485 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    DV     + + I+  +     +LVQ+ K+  G+KGA +T+ +SL GR+ V +PN 
Sbjct: 427 GEVNWDVLGMDGKPHRIEVALNPGDSVLVQVTKDPIGHKGARLTSQISLPGRFLVYVPNN 486

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+ +   ++  K    G  VP G GVI+RTA    ++ E+ RD + L + W 
Sbjct: 487 AMTG-ISRKLPDKERQRLRK--LLGDAVPEGNGVIVRTAAEGASEEELTRDIDRLAKRWQ 543

Query: 274 NVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            + + + ++    P L+Y E ++I R IRD++ +D +++++ G+  Y    ++++L+ P 
Sbjct: 544 TIEKRSTSTKVLAPQLLYSEPDMIVRIIRDVFNEDFTKLVIDGDGVYDTIHEYVELVAPD 603

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
               V +Y     +F    +  Q++     +V LPS G ++I++TEA+  IDVN+G+ T 
Sbjct: 604 LVDRVERYTGDDDVFDHFRVSEQIEKALSRKVNLPSGGSLVIDRTEAMTVIDVNTGKFTG 663

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               +E+T  + NLEAAEE+ RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +D
Sbjct: 664 SGGNLEETVTKNNLEAAEEVIRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRD 723

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS---QSSVALSILRSV 507
           R + QV  +++ GL++M+R+RI + + ES         G G +       +      R  
Sbjct: 724 RTKHQVAEVTSLGLVQMTRKRIGTGLAESLVAAGEDLSGRGLVLPGTEVDNSKQYKSRKK 783

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
                + ++     +  + +    +  ++    E +                  +   + 
Sbjct: 784 RTRSNEKSSAKPSSNELTAIAAATMRSRQDENAEAQEEAPAQATDKETTVAQKPVADEQT 843

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
            +          +      AP        +  D+    I K+E  +        + +   
Sbjct: 844 TTAQTQQTQEETQEAPPEAAPIVHAPGTVMIGDDTETKIQKAEPKKRPTVTPKEQRTEDT 903

Query: 628 IRKRR 632
             ++ 
Sbjct: 904 TERKP 908



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 7   IDASHVEETRVVVLRDNRVEELDF-ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
           I   H   T++VV  D    E    E++ +  + GN+YL KV  V PS++AAFVD G  R
Sbjct: 361 IVREHDGRTQLVVTEDGIAVEHYLSEAKAQASLIGNVYLGKVQNVLPSMEAAFVDIGKGR 420

Query: 66  HGFLPFLEIHPD 77
           +  L   E++ D
Sbjct: 421 NAVLYAGEVNWD 432


>gi|323359799|ref|YP_004226195.1| ribonuclease G and E [Microbacterium testaceum StLB037]
 gi|323276170|dbj|BAJ76315.1| ribonuclease G and E [Microbacterium testaceum StLB037]
          Length = 871

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 113/350 (32%), Positives = 194/350 (55%), Gaps = 4/350 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +PN 
Sbjct: 359 GEVDWDGIDTGNQPRRIELALKSGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPNG 418

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+ +    +  K       +P   GVI+RTA    T+ ++ RD + L   W+
Sbjct: 419 TMNG-ISRKLPDTERARLKK--ILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTSQWE 475

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
           +V        AP L++ E +L+ + +RD++ +D + +++ G++  +   +++  + P   
Sbjct: 476 HVSTQLKTIQAPALLHSEPDLLVKIVRDVFNEDFTRMLIQGDEALQTISNYLAGVAPDLL 535

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
             V +YE     F    +  Q++     +V LPS G ++I++TEA+  +DVN+G+     
Sbjct: 536 ERVEKYEGDQDPFDAFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSG 595

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +DR 
Sbjct: 596 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRT 655

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           + QV  +++ GL++M+R+++   +LE+ ++ C  C G G +     V   
Sbjct: 656 KHQVAEVTSLGLVQMTRKKLGLGLLETFSEACEVCAGRGVVVHHDPVVRH 705



 Score = 97.4 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++++  S     ++ VL DN + E          + GN+YL +V  V PS++AAFVD G 
Sbjct: 291 RVMVVRSKAGRIQIAVLEDNVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAAFVDIGR 350

Query: 64  NRHGFLPFLEIHPD 77
            R+  L   E+  D
Sbjct: 351 GRNAVLYSGEVDWD 364


>gi|311113740|ref|YP_003984962.1| ribonuclease [Rothia dentocariosa ATCC 17931]
 gi|310945234|gb|ADP41528.1| probable ribonuclease [Rothia dentocariosa ATCC 17931]
          Length = 1204

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 148/638 (23%), Positives = 256/638 (40%), Gaps = 26/638 (4%)

Query: 85   DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
            DRQ L+++              +    V+     SL     +               +  
Sbjct: 427  DRQMLVRQKEGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 486

Query: 145  VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
               N     G    DV         I+  +K    +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 487  RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 546

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            R+ V +P  S    ISRK+ +    +  K +   L  P G GVI+RTA    ++ E+  D
Sbjct: 547  RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PDGAGVIVRTAAEGASEEELTHD 603

Query: 265  FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
               L   W+ ++E A +       ++Y+E +L+ + +RD++ +D + +IV G+  +   +
Sbjct: 604  INRLRAQWEEIQEKANSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIE 663

Query: 323  DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
             ++  + P     ++++ED   +F    I  QL      +V LPS G ++I++TEA+  +
Sbjct: 664  AYVTYVAPDLLSRLQKWEDEDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 723

Query: 383  DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
            DVN+G+ T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 724  DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 783

Query: 442  KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            +L E L +DR + QV  +++ GL++M+R+R+ + +LE  ++ C  C G G +     ++ 
Sbjct: 784  RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEQCDSCGGRGLLVHDQPLSG 843

Query: 502  S-------ILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
                    I R       +   A        +D V    ++K+A     E R  +     
Sbjct: 844  RSGGASDFIHRQERTERKRSRAASRNNTRDAADGVDSEKDEKKA-----ERRNAM----A 894

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                 +     +E             K    ++        E            +  S E
Sbjct: 895  SIAAASHSADELEAEDQANRKKRKRRKRSRRTETAELSLEQEIQGIKAGAKAHREVSSRE 954

Query: 614  DIQDNIVSEE---STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
            D    +   +     G     +      R     HDA    + S  + +           
Sbjct: 955  DKVAEVTETDWIGEQGDFTLEQLAGAFDRDLNPEHDARFTRESSRSEAIRAGEAKARASQ 1014

Query: 671  SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
                       G      +   +       E E+    
Sbjct: 1015 KAGRITRSESGGFKSNQGDQSSAEQKSPRAERENLQVE 1052



 Score = 87.7 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
            ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 439 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 498

Query: 75  HPD 77
           + D
Sbjct: 499 NWD 501


>gi|284054075|ref|ZP_06384285.1| ribonuclease [Arthrospira platensis str. Paraca]
          Length = 448

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 204/413 (49%), Gaps = 10/413 (2%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           +Q ++ E    +  +    D++    V   N    +    I        + + ++  +  
Sbjct: 3   KQIIIAEQ--HRIAAVFSEDEIQELVVATGNQQVSDIYLGIVENVLPGIDAAFVNIGDPE 60

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
            +    V    P  + +       I E++  +Q +LVQ++KE  G KG  +T  ++L GR
Sbjct: 61  RNGFIHVSDLGPLRLKRSS---GSITELLMPQQKVLVQVMKEPTGTKGPRLTGNITLPGR 117

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMP   +G  +SR+I +  +R  L+     L  P+GMG+++RT      +  I  D 
Sbjct: 118 YLVLMP-YGRGVNLSRRIRSEAERNRLRA-LAILIKPSGMGLLVRTEAEGMAEDAILEDL 175

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           E L + W+ V++ A ++  P L+  + + I+R +RD+Y  +++ I+V    G +  K  +
Sbjct: 176 EALQKQWEEVQQEATSTRPPALLNRDNDFIQRVLRDMYSTEVNRIVVDSADGIKRVKQHL 235

Query: 326 KLLMPSYARIVRQYEDPHPIF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
                         +             +   +    +  V LPS GY+II  TEAL  I
Sbjct: 236 VNWSVGKTPQGVLIDHHRERIPILEYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSG  TR     +T L TN EAA EIARQLRLR++AG+I+VDFIDM+ +++   V + 
Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEH 355

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
             + LK D++R Q+  +S  GL+E++R+R   ++ E   + C  C G G++  
Sbjct: 356 FNKVLKADKSRPQIAQLSELGLVELTRKRQGQNIYELFGRSCPTCNGLGHLIH 408



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  V  ++ ++EL        Q   +IYL  V  V P + AAFV
Sbjct: 1  MSKQIII----AEQHRIAAVFSEDEIQELVV--ATGNQQVSDIYLGIVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVSDLGP 72


>gi|87125029|ref|ZP_01080876.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9917]
 gi|86167349|gb|EAQ68609.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9917]
          Length = 655

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 168/324 (51%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P + +G  ISR+  +    
Sbjct: 82  ITELLEPRQRVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRR-ISAEGE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++RT     ++  +  D E L+R W+ ++  A  +  P L+ 
Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEAEGISEELLIDDLEALLRQWEAIQRAAETATPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    ++  ++V           F+     +                  
Sbjct: 200 RDEDFIHRILRDHTGPELVRVVVDDPAAVERVSSFLGEEGANVLVESHPEPGELL--EHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I+VDFIDM+ +++   + +    +++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIVDFIDMDSRRDQLQLLEYFTAAIRNDSARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 86.6 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|78211865|ref|YP_380644.1| RNAse E [Synechococcus sp. CC9605]
 gi|78196324|gb|ABB34089.1| ribonuclease, Rne/Rng family [Synechococcus sp. CC9605]
          Length = 646

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 110/324 (33%), Positives = 180/324 (55%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P+  +G  ISR+I++  +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVNISRRISSDAER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT   S ++  +  D E L+R W+ +++ A  +  P L+ 
Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEADSISEELLIEDLESLLRQWEAIQQAAETAAPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D++ ++V           F+     +    V  + +P  +    
Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVEDAAAVGRVSSFLGADASNVL--VEAHSEPSELLEHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDM+ +++   + +    +++ D AR Q+  +S  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEYFTTAVRDDSARPQIAQLSELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 87.0 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|260434465|ref|ZP_05788435.1| putative Ribonuclease E family protein [Synechococcus sp. WH 8109]
 gi|260412339|gb|EEX05635.1| putative Ribonuclease E family protein [Synechococcus sp. WH 8109]
          Length = 646

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 108/324 (33%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P+  +G  ISR+I++  +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVNISRRISSDAER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT     ++  +  D E L+R W+ +++ A  +  P L+ 
Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEADGISEELLIEDLESLLRQWEAIQQAAETAAPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D++ ++V           F+     +    V  + +   +    
Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVDDAAAVGRVSSFLGAEAGNVL--VEAHSESSELLEHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDM+ +++   + +    +++ D AR Q+  +S  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAVRDDSARPQIAQLSELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|218245924|ref|YP_002371295.1| Rne/Rng family ribonuclease [Cyanothece sp. PCC 8801]
 gi|257058972|ref|YP_003136860.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 8802]
 gi|218166402|gb|ACK65139.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 8801]
 gi|256589138|gb|ACV00025.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 8802]
          Length = 653

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 205/467 (43%), Gaps = 22/467 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  ++L GRY VLMP         R  T+    
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLVLMPYGKGVNLSRRIKTDDERS 141

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +        L  PAGMG+++RT    + +  I  D E+L R W++++  A ++  P L+ 
Sbjct: 142 R--LRALAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQRQWESIQVQATSTRPPSLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346
            + + I+R +RD+Y  D++ I+V    G +  K  +       +      +      P+ 
Sbjct: 200 RDDDFIQRVLRDMYSGDVNRIVVDSPAGVKRVKQQLMTWSGGRSPEGVLIDHHRETLPVL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G+I+VDFIDM+ +++   + +   ++L+ D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKTLRADKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSVALSILRSVEEYLLQYTAHNIIVH 522
           ++R+R   ++ E   + C  C G G++         +AL  +       +          
Sbjct: 380 LTRKRQGKNIYELFGQPCPNCGGLGHLVHLPGQSELIALETVTVAPPIPVAKPIEKPTEV 439

Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
           +      +          + E              L    +  +   P            
Sbjct: 440 SEPFGESFFEEDMIDIPRQLEL-------------LHHPSYQEQGNIPNTRRRRRRQPQL 486

Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
            +    +    +    ++       + E  ++     +  E T + R
Sbjct: 487 KEESTSNPKVILSTPTKEVDYSTDTEVEPRKERTPRHLRREETPIER 533



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I     E+  +  +   D +++EL        Q  G+IYL  V  V P + AAF
Sbjct: 1  MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVGDIYLGLVENVIPGIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          V+ G   R+GF+   ++ P
Sbjct: 54 VNIGDAERNGFIHVTDLGP 72


>gi|333027124|ref|ZP_08455188.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071]
 gi|332746976|gb|EGJ77417.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071]
          Length = 1349

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
           +     I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+
Sbjct: 610 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 668

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            +    +   +      VP   GVI+RTA    ++ E++RD E L   W+++++ A    
Sbjct: 669 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 726

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
           AP L+Y E ++  R +RD++ +D ++++VSG++ +     ++  + P     + ++    
Sbjct: 727 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 786

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
             F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  + 
Sbjct: 787 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 846

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 847 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 906

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 907 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 941



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D+ + E            GN+YL KV  V PS++AAF+D G
Sbjct: 532 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 591

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 592 KGRNAVLYAGEV 603


>gi|317129727|ref|YP_004096009.1| ribonuclease, Rne/Rng family [Bacillus cellulosilyticus DSM 2522]
 gi|315474675|gb|ADU31278.1| ribonuclease, Rne/Rng family [Bacillus cellulosilyticus DSM 2522]
          Length = 495

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 213/464 (45%), Gaps = 9/464 (1%)

Query: 98  TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157
            D++ V       D      +             E    +I +  N  +   E +   + 
Sbjct: 19  EDNKVVEWLFEQEDEHSRTSNVFIGRVEDIVPGMEAAFVNIGADKNGFLYRNELIAYDTL 78

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
           +D  +   +Q  I  ++K  Q ++VQ+ KE  G KG  +T  +SL G+Y V +P      
Sbjct: 79  KDDKEPDVKQPTIASMLKEGQSIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLP-YGNYV 137

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
            +S+K+     +   ++      +    G+I+RT     +  EI  +F  L      + +
Sbjct: 138 AVSKKMNEENRKGWREK--AREWIEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQ 195

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
            A     P+++  + +LI R  RD      SEI+V   + Y +  +        +     
Sbjct: 196 QAEKVNVPNVLLNQSSLISRVQRDYLTNKNSEIVVDHFESYEQLLNSSLEGCNIH----- 250

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
            Y++   IF    IE  L+     +V L S G++II +TEAL  IDVN+G+ T +H + D
Sbjct: 251 LYQEKEDIFSYYDIEKHLEKALHEKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRD 310

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           T ++TN+EAA  +A+QLRLR++ G+I++DFIDM+ + + +SV K LKE+ K DR    V 
Sbjct: 311 TVVKTNIEAAYAVAQQLRLRNIGGIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVA 370

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
             +NFGL+EM+R++ R  + +   + C+ CKG G + S  S    + R V   L      
Sbjct: 371 GFTNFGLVEMTRKKARKPLHDIMMESCSVCKGTGQVLSLKSKIAHLEREVF-ALRYIDQD 429

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            I+V   S V   LL      +   E     +I +V G      
Sbjct: 430 AILVEVDSAVYESLLQNNNDLLTSMEQVVNKTIYLVNGENGHLP 473



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          R  VL DN+V E  FE E +     N+++ +V  + P ++AAFV+ G +++GFL   E+
Sbjct: 14 RGAVLEDNKVVEWLFEQEDEHSRTSNVFIGRVEDIVPGMEAAFVNIGADKNGFLYRNEL 72


>gi|15841967|ref|NP_337004.1| cytoplasmic axial filament protein, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|13882240|gb|AAK46818.1| cytoplasmic axial filament protein, putative [Mycobacterium
           tuberculosis CDC1551]
          Length = 621

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 198/377 (52%), Gaps = 19/377 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 76  GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 135

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++ LKEI R +      GVI+RTA     + +I+ D   L   W+
Sbjct: 136 SSTG-ISRKLPDTERQR-LKEILREVVPS-DAGVIIRTASEGVKEDDIRADVARLRERWE 192

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A  +           YEE +++ + IRDL+ +D   +IVSG++ +    +++  +
Sbjct: 193 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 252

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 253 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 312

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 313 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 372

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L ESL +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 373 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 432

Query: 499 -VALSILRSVEEYLLQY 514
             A +  R  E    + 
Sbjct: 433 DSAAATGRKSEPGARRG 449



 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 19 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 78

Query: 75 HPDYYQIPFSDRQ 87
          + D   +  +DR+
Sbjct: 79 NWDAAGLGGADRK 91


>gi|332670933|ref|YP_004453941.1| ribonuclease, Rne/Rng family [Cellulomonas fimi ATCC 484]
 gi|332339971|gb|AEE46554.1| ribonuclease, Rne/Rng family [Cellulomonas fimi ATCC 484]
          Length = 1127

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 115/346 (33%), Positives = 195/346 (56%), Gaps = 4/346 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY V +P  
Sbjct: 599 GEVNWDAAGLEGQPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVFVPGG 658

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +    +  K       VP   GVI+RTA    ++ E++ D   L   W+
Sbjct: 659 GMTG-ISRKLPDTERNRLKK--ILREVVPDSAGVIVRTAAEGASEEELRADVARLQGQWE 715

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + + A  + AP L+  E ++  R +RD++  D S ++V G++ +     ++  L P  A
Sbjct: 716 AIEKKARTASAPALLQGEPDMAIRVVRDIFNDDFSALVVQGDEAWSTISSYIDELAPDLA 775

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
           + V ++     +F    ++ QL      +V LPS G ++I++TEA+  +DVN+G+ T   
Sbjct: 776 QKVSKWTGTQDVFTVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSG 835

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 836 GTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRT 895

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           + QV  +++ GL++M+R+R+   ++E+ ++ C +C G G+I     
Sbjct: 896 KHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCHGRGFIVHADP 941



 Score = 97.4 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    ++ +  + GN+YL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 542 TQIAVLEDGVLVEHYVSNQAQTSMVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV 601

Query: 75  HPD 77
           + D
Sbjct: 602 NWD 604


>gi|148238708|ref|YP_001224095.1| ribonucleases G and E [Synechococcus sp. WH 7803]
 gi|147847247|emb|CAK22798.1| Ribonucleases G and E [Synechococcus sp. WH 7803]
          Length = 646

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 109/324 (33%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P + +G  ISR+I++  +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRRISSEGER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT     ++  +  D E L+R W+ +++ A  +  P L+ 
Sbjct: 141 NRLRA-LGVLVKPPGAGLLIRTEAEEVSEELLIDDLESLLRQWEAIQKAAETASPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    ++S ++V           F+       +  V  + +P  +    
Sbjct: 200 RDEDFIHRILRDHTDPELSRVVVDDPTAVERVSGFLGGDGAHVS--VEAHSEPDELLEHF 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I+VDFIDM+ +++   + +    +++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIVDFIDMDSRRDQLQLLEHFTTAIRDDSARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D+RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDDRVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|228469622|ref|ZP_04054602.1| ribonuclease, Rne/Rng family [Porphyromonas uenonis 60-3]
 gi|228308815|gb|EEK17516.1| ribonuclease, Rne/Rng family [Porphyromonas uenonis 60-3]
          Length = 524

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 138/572 (24%), Positives = 247/572 (43%), Gaps = 67/572 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + VL D  + EL       + I+   Y                 
Sbjct: 1   MNSELIIDVK-PKEVSMAVLEDGELVEL---RTENRNIR---Y----------------- 36

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                       +I              LL E +     + A   ++        + + L
Sbjct: 37  ---------AVGDI--------------LLGEVDNVVRGNNAAFVNIGPMKNGFLHYNDL 73

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +V        E   E       D V   E +                 I   +K    +
Sbjct: 74  GKVFGATTHLLEDIAEKKKVPPIDKVKEGEPLPKDGN-----------IINSGLKKGDKI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LV++ +E  G KG +++  LS+AGR+ VL+P + +    S   +     +   +      
Sbjct: 123 LVKVTREAFGTKGPSLSAELSIAGRFLVLVPFSDQVAISSEIRSTEERTR--LKTIVHSV 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           + +G G I+RT  A +   E+  +   L+  ++   +  + + AP  +YEE N     IR
Sbjct: 181 IKSGYGAIIRTQAAGKKTQELVEEMMDLIDRFETSIKKLVRAKAPTQIYEERNRAINLIR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY--EDPHPIFFRSGIEVQLDSL 358
           D Y K  ++I+V+    Y+E + ++  + P   +IV  Y  +   P+F   G+  Q  +L
Sbjct: 241 DSYNKSFTKIVVNDPDYYKELRGYVADIDPGREQIVTLYEDDAKRPLFDACGVTKQKKTL 300

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLR 417
              +VTL S   +II QTEA+  IDVNS +  R     E+TA   N+  A+ IARQ+RLR
Sbjct: 301 FGRKVTLRSGANIIIEQTEAMHVIDVNSSKKARRTSGQEETAFDVNMAVADLIARQIRLR 360

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL G+IV+DFIDM E  +N+ + + + + +  DRA  ++  +S FGL++++RQR+R + +
Sbjct: 361 DLGGIIVIDFIDMNEAAHNKELYEHMVKLMANDRATHKILPLSKFGLMQITRQRVRQATI 420

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQ-- 534
             T + C  C+G G I++  +    +   + +         N  +H H  VV Y+     
Sbjct: 421 IRTEETCPTCQGTGKIKTSITFTDDLEEMIAQLTTGDKPIRNFAMHLHPYVVAYIKKAPL 480

Query: 535 -KRATIVEYEARFGVSINVVIGIELADKLFYI 565
              +   +++ ++  +I ++   ++A     I
Sbjct: 481 LGSSLFTKWKKKYSKNIKLIEDQDVALLDCKI 512


>gi|218437054|ref|YP_002375383.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7424]
 gi|218169782|gb|ACK68515.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7424]
          Length = 645

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 126/494 (25%), Positives = 225/494 (45%), Gaps = 36/494 (7%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I +++  +Q +LVQ++KE  GNKG  +T  ++L GRY VLMP   +G  +SR+I N  +R
Sbjct: 82  ITDLLAPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIRNDDER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P+GMG+++RT    + +  I  D E L + W+ +++ A ++  P L+ 
Sbjct: 141 SRLRA-LAILVKPSGMGLLVRTEAEGKAEEAIIEDLETLQKQWELIQQQAASTRPPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + I+R +RD+Y  D++ I+V      +  K  +       +     +  + +   + 
Sbjct: 200 RDDDFIQRVLRDMYTSDVNRIVVDNPNSVKRVKQHLMGWSGGRSPEGVVIDHHRESQSVL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G+IVVDFIDM+ +++   + +   ++LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVIVVDFIDMDSRRDQLKLLEHFNKALKADKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   + C  C G G++      + +I            +      +   
Sbjct: 380 LTRKRQGKNIYELFGQPCHTCGGLGHLVHLPGESNAI------------SLETSSFSTPA 427

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
           +    L +K                +         ++        +   +       + Q
Sbjct: 428 IATPRLPEKP--------------IIEPE-----PVYEAGFDEVDEGSQHLDLLYHPNYQ 468

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
                +       ++ +     ++ L  I +  +  E       RR R  R +   +   
Sbjct: 469 DQGLARRRRRRRSNDLVKEETGTKILPGIPERELDVEYESPREDRRDRSLRNQRRDEMSL 528

Query: 647 AGVVSDVSSIQNVI 660
             V  ++S ++  +
Sbjct: 529 ERVSVEMSDLEQNV 542



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I   H       V  +++++EL        Q  G+IYL  V  V P + AAFV+
Sbjct: 1  MPKQIIIAEQHHL---AAVFWEDQIQELVV--ATGNQQVGDIYLGLVENVIPGIDAAFVN 55

Query: 61 YG-GNRHGFLPFLEIHP 76
           G   R+GF+   ++ P
Sbjct: 56 IGDAERNGFIHVTDLGP 72


>gi|154486651|ref|ZP_02028058.1| hypothetical protein BIFADO_00470 [Bifidobacterium adolescentis
           L2-32]
 gi|154084514|gb|EDN83559.1| hypothetical protein BIFADO_00470 [Bifidobacterium adolescentis
           L2-32]
          Length = 464

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/355 (31%), Positives = 194/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 49  GEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 108

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        +   +       P  MGVI+RTA    ++  I +D E L+R W+
Sbjct: 109 GMTGVSRKL---SERERARLKNIVSKIAPKDMGVIIRTAAEGASEEAITKDLENLVRQWE 165

Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  D S++IV G++ Y   ++++  + P
Sbjct: 166 RITAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAP 225

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 226 DLKDKLEKWDPAEHDGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 285

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   R   +E+T  + NLEAAEEIARQLRLRD+ G++++DF+DM    N   V ++L E
Sbjct: 286 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 345

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 346 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTV 400



 Score = 84.3 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 25 VEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
          + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E++ D
Sbjct: 2  LVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWD 54


>gi|86609280|ref|YP_478042.1| ribonuclease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557822|gb|ABD02779.1| ribonuclease, Rne/Rng family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 723

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 142/530 (26%), Positives = 231/530 (43%), Gaps = 31/530 (5%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I E++  +Q +LVQ++KE  GNKG  +T  L+  GRY VL P   KG  +SR+I + 
Sbjct: 79  HASISELVLPQQKVLVQVMKEPTGNKGPRLTGDLAFPGRYLVLRP-YGKGVHLSRRIEDR 137

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
            +R  LK     L  P  MG+++RT     ++  +  D E L +LW+++++    +  P 
Sbjct: 138 EERNRLKS-LAILIKPPQMGLLVRTEAEGVSEEAMIDDLEQLKKLWEDIQQQYQAARGPG 196

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPH 343
           L+  + + I+R +RD+Y  D++ I+     G +  + +++            V  + +P 
Sbjct: 197 LLNRDDDFIQRVLRDVYSDDVNRIVTDSAAGAKRVRSYLQGWNKGQMPPGVVVDAHREPT 256

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           PI     +   +    +  V LPS GY+II  TEAL  IDVNSG  T+     +T L TN
Sbjct: 257 PILEYFRVNAVIRQALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTQSATSRETVLWTN 316

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
            EAA EIARQLRLR++AG+IVVDFIDM+ +++   V +   ++L  D+AR QV  +S  G
Sbjct: 317 CEAATEIARQLRLRNIAGVIVVDFIDMDSRRDQLLVLEHFNKALSSDKARPQVVQLSELG 376

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAG---YIRSQSSVALSILRSVEEYLLQYTAHNII 520
           L+E++R+R   S+ E     C  C+G G    +       L  + S     L   A    
Sbjct: 377 LVELTRKRQGQSLYEIFGYSCPTCEGLGILARLPGAEPGHLLTIESGLTVTLPTEAEGGD 436

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALVN 576
                 ++    N +RA +             V    L+           + +P Q   +
Sbjct: 437 EEEAGPILPRDGNPQRARLR------------VGSDGLSRGDSRALLRRSRSAPGQRRPS 484

Query: 577 TGHKVGSD--SQAPSYDKNIECVWQD--EALLPIPKSESLEDIQDNIVSEES---TGVIR 629
                 SD   + P  +   +   +D  +            D      + E     G   
Sbjct: 485 PDPFTTSDDLEEEPRVETGRKRPREDWGDPRTGQRLVARSLDTPVEEEAPEPMQLPGGGA 544

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             +R+  RR    +  ++    D +S    +  S     E         +
Sbjct: 545 DLKRQEPRRSGPGEEAESASRKDHTSPARTVRASGTESSEGRPAPVRQTV 594



 Score = 77.3 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ RV  V  +++V+EL   S       G++Y+  +  V PS+ AAFV
Sbjct: 1  MPRQIVI----AEQHRVAAVFAEDQVQELIVASGAH--QVGDVYVGIIENVLPSIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGPAERNGFIHVSDLGP 72


>gi|19553563|ref|NP_601565.1| ribonuclease E [Corynebacterium glutamicum ATCC 13032]
 gi|62391207|ref|YP_226609.1| ribonuclease E protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326547|emb|CAF21029.1| PROBABLE RIBONUCLEASE E (RNASE E) PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 1021

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 141/576 (24%), Positives = 243/576 (42%), Gaps = 52/576 (9%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G           R   I++ +K    +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 342 GEVDWKAAGLGGRGRRIEQALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPG- 400

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISRK+  P  ++ LKEI   +    G G I+RTA    ++  I  D   L  LW+
Sbjct: 401 GRSAGISRKLPGPERKR-LKEILGRVVPAQG-GTIIRTAAEGVSEENIAADVNRLHTLWE 458

Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++E               +YEE +++ + IRDL+ +D + +IV G++ +   + +++ +
Sbjct: 459 QIKERTAEEKKSRGSKPITMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSV 518

Query: 329 MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
            P     V  +          F    +  QL+     +V LPS G +II++TEA+  IDV
Sbjct: 519 APDLVSRVEHFNRADFDGKDAFEAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDV 578

Query: 385 NSGRSTR--EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           N+GR T      +E+T    N+EAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++
Sbjct: 579 NTGRYTGKGGGNLEETVTLNNIEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRR 638

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           L E+L+ DR R QV  +++ GL++M+R+RI + +LE+ +  C +C+G G I     V   
Sbjct: 639 LNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTV 698

Query: 503 ILR-------SVEEYLLQYTAHNIIVHTHSDVVLY-LLNQKRATIVEYEARFGVSI---- 550
             R           +    + +         V +  L+      + +       S+    
Sbjct: 699 DERVEAKAEERSRRHQRSNSTNKAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLD 758

Query: 551 ----------------NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
                            ++    +  +     +    +            + A       
Sbjct: 759 DSDLDDVVNDKLDEPERILAESTVEPEEGPRRRARRQRQESAADDIAAIAAAAVDIASEE 818

Query: 595 ECVW----------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
           +             + E + P+ +  +    +     E++        RRRR+ R  +  
Sbjct: 819 DPDEPSGSSYVSDFEAEPIAPVVEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRS 878

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             A    D + +   + ++            +   E
Sbjct: 879 DHAPKPEDFAPVVEEVAETPVKTPARKAPRRNRPSE 914



 Score = 87.3 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 1   MANKMLIDAS----HVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55
           M  +M++       H    T+V VL D+++ E    S+ +  + GNIYL +V  V PS++
Sbjct: 266 MERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSME 325

Query: 56  AAFVDYGGNRHGFLPFLEI 74
           AAF+D G  R+G L   E+
Sbjct: 326 AAFIDIGKGRNGVLYAGEV 344


>gi|148243276|ref|YP_001228433.1| ribonucleases G and E [Synechococcus sp. RCC307]
 gi|147851586|emb|CAK29080.1| Ribonucleases G and E [Synechococcus sp. RCC307]
          Length = 642

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  LSL GR+ VL P+  +G  +SR+       
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLSLPGRFLVLQPH-GQGVNVSRR-IGAETE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++RT     ++ +I  D E L+R W+ +++ A  +  P L+ 
Sbjct: 140 RNRLRALAVLIKPPGTGLLVRTEADGVSEEQIIDDLESLLRQWEAIQQAAETAHPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RDLY  D+  ++V  E        F+     +    V  +ED   I    
Sbjct: 200 RDEDFIHRVLRDLYSTDVLRVVVDSEDAVARVNRFLGPDQANLI--VEHHEDASEILEHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  +DVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVVDVNSGSFTRSANARETVLWTNCEAATE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G++++DFIDME +++   + +   ++++ D+AR Q+  I+  GL+E++R
Sbjct: 318 IARQLKLRNIGGVVIIDFIDMESRRDQLMLLEHFTQAMRDDQARPQIAQITELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLNDERVDELIV--AQGRHQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHITDLGP 72


>gi|229820110|ref|YP_002881636.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333]
 gi|229566023|gb|ACQ79874.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333]
          Length = 944

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 203/366 (55%), Gaps = 14/366 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ + +   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P+ 
Sbjct: 442 GEVNWDAAGLEGQPRRIEQALSSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPSG 501

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+ +    +  K       VP G GVI+RTA    ++ E++RD E L + W 
Sbjct: 502 AMTG-ISRKLPDTERARLKK--LLKEIVPDGQGVIVRTAAEGASEDELRRDVERLTKQWA 558

Query: 274 NVR----------ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           +++                 AP L+  E  L  R +RD++ +D S + VSG++ +    D
Sbjct: 559 DIQTKVNGSGGTGRKPQKVTAPALLKGEPELALRVVRDVFNEDFSSLTVSGDEAWHTISD 618

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           ++  + P  A+ +  + D   +F R  I+ QL      +V LPS G ++I++TEA+  +D
Sbjct: 619 YLTTVAPDLAQRLTHWTDDADVFARFRIDEQLAKGLDRKVWLPSGGSLVIDRTEAMTVVD 678

Query: 384 VNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           VN+G+ T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++
Sbjct: 679 VNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRR 738

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           L E L +DR R QV  +++ GL++M+R+R+   ++E+ ++ C +C G G++         
Sbjct: 739 LIECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCHGRGFVVHTEPFEAQ 798

Query: 503 ILRSVE 508
            +   E
Sbjct: 799 PVAEEE 804



 Score = 98.1 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     + +  + GN+YL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 385 TQIAVLEDGVLVEHYVARKQQSSMVGNVYLGRVQNVLPSMEAAFVDLGKGRNAVLYAGEV 444

Query: 75  HPD 77
           + D
Sbjct: 445 NWD 447


>gi|229493246|ref|ZP_04387038.1| possible ribonuclease E Rne [Rhodococcus erythropolis SK121]
 gi|229319977|gb|EEN85806.1| possible ribonuclease E Rne [Rhodococcus erythropolis SK121]
          Length = 1081

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 140/554 (25%), Positives = 239/554 (43%), Gaps = 42/554 (7%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +          I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 508  GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 566

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272
                 ISRK+ +   ++ LKEI R +      GVI+RTA    ++ E+ RD   L   W 
Sbjct: 567  GTSTGISRKLPDTERKR-LKEILRDIVPA-DAGVIIRTASEGVSEEELARDVTRLQAQWA 624

Query: 273  ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
                         S  P  +YEE +++ + IRDL+ +D S++++ GEK +   ++++  +
Sbjct: 625  GIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFNEDFSKLVIEGEKAHTTVENYINSV 684

Query: 329  MPSYARIVRQYEDP--HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
             P     + +Y       +F    I+ QL      +V LPS G ++I++TEA+  +DVN+
Sbjct: 685  APDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 744

Query: 387  GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
            G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E
Sbjct: 745  GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 804

Query: 446  SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
             L +DR R QV  +++ GL++M+R+++ + ++E+ +  C +C G G I     V +    
Sbjct: 805  CLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHSEPVEVKSSD 864

Query: 506  SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                      + +                KR                      + +    
Sbjct: 865  DGGSRSGSQRSDSGTS----------RKNKRG---------------RGDKSASTE---- 895

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
              G    A              P           D+  +     ES  D       ++++
Sbjct: 896  SNGQEAPAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSIES--DSAGTSSGDDAS 953

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                +++ R      A +HHD  VV   +   + +D+        +           +  
Sbjct: 954  KSADRQQDRPIDTPAAAEHHDVPVVDSAAEEVSAVDNESAAASTEATPRGRRRSRRASRA 1013

Query: 686  FTENYDVSIPPVST 699
             +     + P V T
Sbjct: 1014 ASAPVAEAAPEVGT 1027



 Score = 96.2 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E    +     + GN+YL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 451 TQVAVLEDGVLVEHFVTNSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 510

Query: 75  HPD 77
           + +
Sbjct: 511 NWE 513


>gi|89895913|ref|YP_519400.1| hypothetical protein DSY3167 [Desulfitobacterium hafniense Y51]
 gi|89335361|dbj|BAE84956.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 411

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 184/338 (54%), Gaps = 3/338 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
             ED       +  +++V+K RQ LL Q+ KE  G+KGA +TT L++ GRY+VLMPNT  
Sbjct: 77  YEEDERLPPSNELRVEQVLKPRQELLAQVTKEPVGSKGARITTNLTIPGRYAVLMPNTKY 136

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +        +           P   G+I+RT        E+  DF  L+ LW+ +
Sbjct: 137 IGVSRKITEEAERTR--LREIAREACPEDKGIIVRTLAKGIEAKELAADFRELVALWERL 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
            +   +   P LV+++ +L+ RAIRD   +++  I V+  +     ++ ++ L       
Sbjct: 195 EKKIPHVSIPGLVHQDVDLVSRAIRDWVDQEVKIITVNQPEVAEGMRNALRELGHPAVNH 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           V+       IF   GI+ ++    Q +V L S GY++I QTEAL  IDVN+G+   +  +
Sbjct: 255 VQLV-YKEDIFSDYGIDDKIRQALQPKVWLKSGGYLVIQQTEALTVIDVNTGKYVGDKSL 313

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT L  N EAA EIARQLRLR+L G+IV+DFIDM  +++   + + L++++ +D+ + Q
Sbjct: 314 QDTILHINQEAALEIARQLRLRNLGGIIVIDFIDMASEEDKEQLLQVLEKAVARDKLKCQ 373

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
           V  ++  GL+EM+R+++  ++       C +C G+G I
Sbjct: 374 VMGLTQLGLVEMTRKKVGQTLEVRYGHPCPHCDGSGKI 411



 Score = 97.0 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
          R  VL D  + E+  E     ++ GNIY  +V  V P +QAAFVD G  ++ +L   +  
Sbjct: 14 RAAVLEDGELVEVYEEEGLISRLVGNIYRGRVINVLPGMQAAFVDIGLEKNAYLYVGDAV 73

Query: 76 PDYY 79
          P  Y
Sbjct: 74 PFQY 77


>gi|219670345|ref|YP_002460780.1| ribonuclease, Rne/Rng family [Desulfitobacterium hafniense DCB-2]
 gi|219540605|gb|ACL22344.1| ribonuclease, Rne/Rng family [Desulfitobacterium hafniense DCB-2]
          Length = 411

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/338 (33%), Positives = 185/338 (54%), Gaps = 3/338 (0%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
             ED       +  +++V+K RQ LL Q+ KE  G+KGA +TT L++ GRY+VLMPNT  
Sbjct: 77  YEEDERLPPSNELRVEQVLKPRQELLAQVTKEPVGSKGARITTNLTIPGRYAVLMPNTKY 136

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +        +           P   G+I+RT        E+  DF  L+ LW+ +
Sbjct: 137 IGVSRKITEEAERTR--LREIAREACPEDKGIIVRTLAKGIEAKELATDFRELVALWERL 194

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
            +   +   P LV+++ +L+ RAIRD   +++  I V+  +     ++ ++ L    A  
Sbjct: 195 EKKIPHVSIPGLVHQDVDLVSRAIRDWVDQEVKIITVNQPEVAEGMRNALRELGHPAANH 254

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
           V+       IF   GI+ ++    Q +V L S GY++I QTEAL  IDVN+G+   +  +
Sbjct: 255 VQLV-YKEDIFSDYGIDDKIRQALQPKVWLKSGGYLVIQQTEALTVIDVNTGKYVGDKSL 313

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           +DT L  N EAA EIARQLRLR+L G+IV+DFIDM  +++   + + L++++ +D+ + Q
Sbjct: 314 QDTILHINQEAALEIARQLRLRNLGGIIVIDFIDMTSEEDKEQLLQVLEKAVARDKLKCQ 373

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
           V  ++  GL+EM+R+++  ++       C +C G+G I
Sbjct: 374 VMGLTQLGLVEMTRKKVGQTLEVRYGHPCPHCDGSGKI 411



 Score = 95.8 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
          R  VL D  + E+  E     ++ GNIY  +V  V P +QAAF+D G  ++ +L   +  
Sbjct: 14 RAAVLEDGELVEVYEEEGLISRLVGNIYRGRVINVLPGMQAAFIDIGLEKNAYLYVGDAV 73

Query: 76 PDYY 79
          P  Y
Sbjct: 74 PFQY 77


>gi|22298140|ref|NP_681387.1| ribonuclease E [Thermosynechococcus elongatus BP-1]
 gi|22294319|dbj|BAC08149.1| ribonuclease E [Thermosynechococcus elongatus BP-1]
          Length = 668

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 120/328 (36%), Positives = 191/328 (58%), Gaps = 4/328 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  +SL GRY VLMP   +G  +SR+ITN  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGTKGPRLTGNISLPGRYLVLMP-YGRGVNLSRRITNEAER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT     ++  I  D E L R W+ +++ A  S  P L+ 
Sbjct: 141 HRLRA-LGILVKPAGMGLLVRTEAEGVSEEAILEDLELLQRQWETIQQQAAASRPPQLLG 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR--IVRQYEDPHPIFF 347
            + + I++ +RD+Y  D++ I+V    G +  K  +K    +     ++  +++P PI  
Sbjct: 200 RDDDFIQKVLRDVYSSDVNRIVVDTPDGVKRVKQHLKNWNVNRPVGVLIDYHQEPIPILD 259

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              +   +    +  V LPS GY+II  TEAL  IDVNSG  T      +T L TN EAA
Sbjct: 260 YFRVNAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSGSFTSSATSRETVLWTNCEAA 319

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
            EIARQLRLR++AG+I+VDFIDM+ +++   + +   ++L+ D+AR Q+  +S  GL+E+
Sbjct: 320 TEIARQLRLRNIAGVIIVDFIDMDSRRDQLLLLEHFSKALRADKARPQIAQLSELGLVEL 379

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRS 495
           +R+R   ++ E   + C+ C G G++  
Sbjct: 380 TRKRQGQNIYELFGRPCSACGGLGHLVH 407



 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     EE R   V  +++++EL   +       G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEEHRLAAVFAEDQIQELIVATGTH--QVGDIYLGVVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G  +R+GF+   ++ P
Sbjct: 55 NLGDASRNGFIHVSDLGP 72


>gi|134097992|ref|YP_001103653.1| ribonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|133910615|emb|CAM00728.1| ribonuclease, Rne/Rng family [Saccharopolyspora erythraea NRRL 2338]
          Length = 1075

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 135/552 (24%), Positives = 238/552 (43%), Gaps = 8/552 (1%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      +   I++ +     +LVQ+ K+  G+KGA +TT +SL GR+ V +P  
Sbjct: 471  GEVDWDAAGLAGKARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPGG 530

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   ++   +      VP   GVI+RTA    ++  + RD   L   W+
Sbjct: 531  G-ATGISRKLPDNERKR--LKEILKRIVPENAGVIIRTASEGTSEEALDRDVRRLQAQWE 587

Query: 274  NVREL--ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
             ++E   +  + AP L+YEE +L+ + +RDL+ +D S + V G + +   + ++K + P 
Sbjct: 588  VIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWDTIEAYVKHVAPD 647

Query: 332  YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
             A  + ++   + +F    I  Q+      +V LPS GY++I++TEA+  IDVN+G+ T 
Sbjct: 648  LAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTG 707

Query: 391  REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
                +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +D
Sbjct: 708  SGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRD 767

Query: 451  RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS--VALSILRSVE 508
            R R QV  +++ GL++M+R+R+ + +LE+ +  C +C+G G + S      A +      
Sbjct: 768  RTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTDPVTHAHTNGSGGG 827

Query: 509  EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
                +   +          V+              A            +  +K       
Sbjct: 828  GGGGRRNRNRGKSQEPETPVVEAAPAAEPEAKAEPAAEAPKPEKQEKPQKQEKAERKAAA 887

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            +  Q +        + ++ P   +  E V   E        E     Q    +  +  V 
Sbjct: 888  AAEQPVRADKAPEPAKAEQPVEAERAEPVKATEPAPAPEAVEEPVAEQPEAAAPAAEPVR 947

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              +         +     A   S+ +                +      ++        E
Sbjct: 948  ASQPEEAAPTPASQPEPAAEESSEPAVNGRARRRKVSRPAGSAGAPAAPVVVAVPAKPAE 1007

Query: 689  NYDVSIPPVSTP 700
            + +     V + 
Sbjct: 1008 SSESQDNGVPST 1019



 Score = 95.4 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 11  HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
           + ++T++ VL DN + E    S     + GN+YL +V  V PS++AAFVD G  R+  L 
Sbjct: 410 NGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLY 469

Query: 71  FLEIHPD 77
             E+  D
Sbjct: 470 AGEVDWD 476


>gi|172035193|ref|YP_001801694.1| ribonuclease E [Cyanothece sp. ATCC 51142]
 gi|171696647|gb|ACB49628.1| ribonuclease E [Cyanothece sp. ATCC 51142]
          Length = 671

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 139/549 (25%), Positives = 232/549 (42%), Gaps = 37/549 (6%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  GNKG  +T  +SL GRY VLMPN  KG  +SR+I N  +R
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMPN-GKGVNLSRRIRNDDER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E+L R W++++  A ++ AP L+ 
Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQRQWESIQVQATSTRAPSLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346
            + + I+R +RD+Y  D++ I+V    G +  K  +              +         
Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPSGVKRVKHHLMNWSGGRPPEGVLIDHHRESMSIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAVREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G+I+VDFIDM+ +++   + +   ++LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKVDKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   + C  C G G++                      +  + + + + 
Sbjct: 380 LTRKRQGKNIYELFGQPCPQCGGLGHLAHLP----------------GESQLVALESAAT 423

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
             L +      T    E    V+             F  E       L    H    +  
Sbjct: 424 TPLPVPAPTPVTPKPIEKPLEVN-----DSGWDSP-FEDEDSDNSDQLELLHHPSYQEQN 477

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
           + + ++          ++    ++S  ++      + +       RR R  R    +   
Sbjct: 478 SNANNRRRRRRQTPNLVIKEDSTKSSSNVGIKETDDNNNESGNDNRRERLPRHLRREEGP 537

Query: 647 AGVVSDVSSIQNV----------IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
              VS   +              +      + +P  +        G    T     +  P
Sbjct: 538 VERVSVEMTPLEQDVYALMGISPLVRVDKEFKDPKSVVVSVKSPEGIERKTIEKTSATTP 597

Query: 697 VSTPEMESS 705
            +       
Sbjct: 598 ETQTPTSEE 606



 Score = 70.8 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 1  MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M  +++I     E+  +  +   D +++EL        Q   +I+L  V  V P + AAF
Sbjct: 1  MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAF 53

Query: 59 VDYG-GNRHGFLPFLEIHP 76
          V+ G   R+GF+   ++ P
Sbjct: 54 VNIGDAERNGFIHVTDLGP 72


>gi|113953943|ref|YP_729606.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. CC9311]
 gi|113881294|gb|ABI46252.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. CC9311]
          Length = 667

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 107/324 (33%), Positives = 173/324 (53%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P + +G  ISR+       
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRR-IGSEGE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++RT     ++  +  D E L+R W+ +++ +  +  P L+ 
Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEADGISEELLIDDLESLLRQWEAIQKASEAASPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D+  ++V         + F+          V  + +P  +    
Sbjct: 200 RDEDFIHRILRDHTGLDLDRVVVESPAAVERVRSFLGDEGSHVV--VEAHPEPSELLEDY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNGAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR++ G+I+VDFIDM+ +++   + +    +++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLRLRNIGGVIIVDFIDMDSRRDQLQLLEHFTGAIRDDAARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 82.7 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D  V+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDECVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|282861864|ref|ZP_06270928.1| ribonuclease, Rne/Rng family [Streptomyces sp. ACTE]
 gi|282563680|gb|EFB69218.1| ribonuclease, Rne/Rng family [Streptomyces sp. ACTE]
          Length = 1127

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 123/348 (35%), Positives = 200/348 (57%), Gaps = 7/348 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 437 GEVNFEALGMAHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 496

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L   WD
Sbjct: 497 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWD 553

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +++      +S AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P
Sbjct: 554 EIQQKAKGTTSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSQVAP 613

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
             +  + ++     +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T
Sbjct: 614 DLSDRLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFT 673

Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
            +   +E+T  + NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +
Sbjct: 674 GQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 733

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           DR + QV  +++ GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 734 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 781



 Score = 91.2 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 368 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 427

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 428 KGRNAVLYAGEV 439


>gi|209527546|ref|ZP_03276048.1| ribonuclease, Rne/Rng family [Arthrospira maxima CS-328]
 gi|209492034|gb|EDZ92387.1| ribonuclease, Rne/Rng family [Arthrospira maxima CS-328]
          Length = 748

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/574 (23%), Positives = 237/574 (41%), Gaps = 10/574 (1%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           +Q ++ E    +  +    D++    V   N    +    I        + + ++  +  
Sbjct: 3   KQIIIAEQ--HRIAAVFSEDEIQELVVATGNQQVSDIYLGIVENVLPGIDAAFVNIGDPE 60

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
            +    V    P  + +       I E++  +Q +LVQ++KE  G KG  +T  ++L GR
Sbjct: 61  RNGFIHVSDLGPLRLKRSS---GSITELLMPQQKVLVQVMKEPTGTKGPRLTGNITLPGR 117

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMP   +G  +SR+I    +R  L+     L  P+GMG+++RT      +  I  D 
Sbjct: 118 YLVLMPF-GRGVNLSRRIRLETERNRLRA-LAILIKPSGMGLLVRTEAEGMAEDAILEDL 175

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           E L + W+ +++ A ++  P L+  + + I+R +RD+Y  +++ I+V    G R  K  +
Sbjct: 176 EALQKQWEEIQQEATSTRPPALLNRDNDFIQRVLRDMYSTEVNRIVVDSADGIRRVKQHL 235

Query: 326 KLLMPSYARIVRQYEDPHPIF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
                         +             +   +    +  V LPS GY+II  TEAL  I
Sbjct: 236 VNWSVGKTPQGVLIDHHRERIPILEYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSG  TR     +T L TN EAA EIARQLRLR++AG+I+VDFIDM+ +++   V + 
Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEH 355

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
             + LK D++R Q+  +S  GL+E++R+R   ++ E   + C  C G G++      + +
Sbjct: 356 FNKVLKADKSRPQIAQLSELGLVELTRKRQGQNIYELFGRSCPTCNGLGHLIHLPGESAA 415

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
                 E  +                   L Q+   +    +       +    E+    
Sbjct: 416 DSAEASERFMVSPKSLSNPPGFDTGTRTALGQETRRVQTLSSASSTEPLMRDDSEMVSGE 475

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
                  P   L+N          +    +    +   E L+   +      +       
Sbjct: 476 LDTGGNFPELELLNHPSYQDIGGGSNIRRRRRRRIGDIEPLVKGEEGNRSIRVNSANTYN 535

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
           ++T            R+  T+     V SD    
Sbjct: 536 DTTRTEANTDVLLNDRQELTERFPKSVKSDSIKA 569



 Score = 87.3 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  V  ++ ++EL        Q   +IYL  V  V P + AAFV
Sbjct: 1  MSKQIII----AEQHRIAAVFSEDEIQELVV--ATGNQQVSDIYLGIVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVSDLGP 72


>gi|119510874|ref|ZP_01629998.1| Ribonuclease E and G [Nodularia spumigena CCY9414]
 gi|119464483|gb|EAW45396.1| Ribonuclease E and G [Nodularia spumigena CCY9414]
          Length = 723

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 119/327 (36%), Positives = 184/327 (56%), Gaps = 5/327 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++  GRY VLMP   +G  +SR+I +  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITSPGRYVVLMP-YGRGVNLSRRIKSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W+ +++ A ++ AP L+ 
Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGKPEEAIIEDLELLQKQWEAIQQEAHSTRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346
            + + I+R +RD+Y  D++ I+V    G +  K +++             +      PI 
Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKHYLQNWSGGQTPQGVLIDHHRDRSPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I   +    +  V LPS GY+II  TEAL  +DVNSG  TR     +T L TN EA
Sbjct: 260 EYFRISAAIKEALKPRVDLPSGGYIIIEPTEALTVVDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+IVVDFIDME +++   V +    +LK D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNYALKADKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI 493
           ++R+R   ++ E     C  C G G+I
Sbjct: 380 LTRKRQGQNIYELFGHTCPTCGGLGHI 406



 Score = 78.5 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ ++  V  +++++EL   + H     G++YL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDVYLGVVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVTDLGP 72


>gi|15827770|ref|NP_302033.1| ribonuclease [Mycobacterium leprae TN]
 gi|221230247|ref|YP_002503663.1| putative ribonuclease [Mycobacterium leprae Br4923]
 gi|13093322|emb|CAC30418.1| possible ribonuclease [Mycobacterium leprae]
 gi|219933354|emb|CAR71562.1| possible ribonuclease [Mycobacterium leprae Br4923]
          Length = 924

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 195/381 (51%), Gaps = 19/381 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 390 GEVNWEAAGLGGADRKIEQALKPGDYIVVQVNKDPVGHKGARLTTQVSLAGRYLVYVPGA 449

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP   GVI+RTA     + +I++D   L   W+
Sbjct: 450 SSTG-ISRKLPDTERQR--LKEILREVVPPDAGVIIRTASEGVKEEDIRKDVTRLQEHWE 506

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +    + +           YEE +++ + IRDL+  D S ++VSG++ +    +++  +
Sbjct: 507 QIEAKTIQTKEKAAGAAVALYEEPDVLVKVIRDLFNDDFSGLVVSGDEAWNTINEYVNSV 566

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +Y+ P           F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 567 APELVSKLTKYDPPIGPDGQHGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 626

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 627 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 686

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            ++L E L +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 687 LRRLTEVLARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCTGRGILLHTDPA 746

Query: 500 AL--SILRSVEEYLLQYTAHN 518
                + R  E    +     
Sbjct: 747 NSTPMVGRKSESGGRRSKRSK 767



 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 333 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 392

Query: 75  HPDYYQIPFSDRQ 87
           + +   +  +DR+
Sbjct: 393 NWEAAGLGGADRK 405


>gi|158320783|ref|YP_001513290.1| ribonuclease [Alkaliphilus oremlandii OhILAs]
 gi|158140982|gb|ABW19294.1| ribonuclease, Rne/Rng family [Alkaliphilus oremlandii OhILAs]
          Length = 501

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 147/482 (30%), Positives = 254/482 (52%), Gaps = 11/482 (2%)

Query: 83  FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
             +R A+L++  + +   E   +    G++      ++      A      E+       
Sbjct: 11  SENRLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDIGLEK------- 63

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
            +    V+D  G    +      R+  I++V+K  Q ++VQ++KE   +KGA VTT ++L
Sbjct: 64  -NCFLYVKDALGQEYFNKKDFVDREISIKDVVKQGQEIIVQVIKEPIADKGARVTTNITL 122

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
            GRY VLMP+T +   +SRKI +  +R+ LK     L+    MGVILRT    ++K + +
Sbjct: 123 PGRYLVLMPDT-QYIGVSRKIGSAEERERLKAEIEALKPE-NMGVILRTVAEGKSKDDFR 180

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
            D ++L++LW  + +      AP L+Y++ +LI + IRD + K+I E I++ E  Y+ A 
Sbjct: 181 EDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENEYKSAM 240

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
           D ++LL P+    +  +E+ H IF    IE Q+    + ++ L S GY++I+ TEAL  +
Sbjct: 241 DLVELLSPNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTEALTVV 300

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVN+G+      +EDT L+TNLEAA EIA+QLRLRD+ G+I++DFIDM  +++ + V   
Sbjct: 301 DVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQKVLNL 360

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           L++SL KDR + ++  ++  GL+EM+R+++R  +     K C  C G+G + ++ ++   
Sbjct: 361 LEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEYTLLQR 420

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
             + +    L  +   +I   H      +  ++  T  E E    V   +V    L    
Sbjct: 421 FEKEMRRIALHTSCEAVIFEVHP-TAFKIFEEEFITRKEIEGLTKVQSFIVPNPSLNFDD 479

Query: 563 FY 564
             
Sbjct: 480 LK 481



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          N++++D    E  R+ +L D  + EL  E  + K+I GNIY  +V  V P +QAAFVD G
Sbjct: 2  NQIIVDVGISEN-RLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDIG 60

Query: 63 GNRHGFLPFLE-IHPDYY-QIPFSDRQALLKESNIAQTD 99
            ++ FL   + +  +Y+ +  F DR+  +K+      +
Sbjct: 61 LEKNCFLYVKDALGQEYFNKKDFVDREISIKDVVKQGQE 99


>gi|225351141|ref|ZP_03742164.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158597|gb|EEG71839.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 455

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 195/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 43  GEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 102

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA    ++  I +D E L+R W+
Sbjct: 103 GMTGVSRKL---SERERSRLKNIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWE 159

Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  D S++IV G++ Y   ++++  + P
Sbjct: 160 RITSKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAP 219

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 220 DLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 279

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++DF+DM    N   V ++L E
Sbjct: 280 GRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 339

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 340 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTV 394



 Score = 78.5 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
           GNIYL +V  V PS++AAFVD G  R+G L   E++ D
Sbjct: 10 VGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWD 48


>gi|325954784|ref|YP_004238444.1| ribonuclease, Rne/Rng family [Weeksella virosa DSM 16922]
 gi|323437402|gb|ADX67866.1| ribonuclease, Rne/Rng family [Weeksella virosa DSM 16922]
          Length = 522

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 143/569 (25%), Positives = 246/569 (43%), Gaps = 68/569 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I ++  ++ R+ VL D R+ EL  +S ++                         
Sbjct: 1   MNKELVI-STEGQDVRIAVLEDGRLMELHQDSSNQ------------------------- 34

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                 GF    +I+             L K   +A + +    D     D  +      
Sbjct: 35  ------GF-AVGDIY-------------LGKIKKLAPSLNACFVDIGYSKDAFLHYHDLG 74

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            ++     FS               + N             K   +   I +V +    +
Sbjct: 75  PQIRSSFKFSH------------LSMKNKHQTHWLKHFKTEKDINKDGSIADVFQPGDSV 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           +VQI KE    KG  +T+ +S+AGRY VL+P +++     +        + L        
Sbjct: 123 MVQITKEPIHTKGPRITSEISIAGRYIVLVPFSNRVSISQKIKNKEERERLL--GILEAI 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P G GVI+RT    +   E++ D  YL+  W  V    + + AP L+ +E +     +R
Sbjct: 181 KPEGFGVIIRTVAEEKNTEELQDDLNYLLNKWKVVHRNLVKNTAPALILDEMDRASSILR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH-PIFFRSGIEVQLDSLH 359
           D +  D  +I V  E  Y + +D++K + P   +IV+ YEDP  PIF +  IE Q+    
Sbjct: 241 DNFNDDFIKISVDDESLYNDMRDYLKYIAPDKIKIVKLYEDPIVPIFEKYNIERQIKLAF 300

Query: 360 QTEVTLPS--RGYVIINQTEALVSIDVNSGR-STREHCIEDTALQTNLEAAEEIARQLRL 416
              VT+P     Y++I  TEAL  IDVNSG  S      ED+A   N  AA EIARQL+L
Sbjct: 301 GRTVTIPQSKGAYLVIEHTEALHVIDVNSGNISRNSRNQEDSAFTVNKVAATEIARQLKL 360

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           RD+ G++V+DFIDM   ++ + + + L+  ++KD+A+ ++   S FGL++++RQR+R  +
Sbjct: 361 RDMGGIVVIDFIDMTSAEHKKQLFEHLRSEMQKDKAKHKILPPSRFGLIQITRQRVRPEL 420

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQ 534
             +TT+          I +   +   I ++++  + +       + +H H  V  YL   
Sbjct: 421 NYTTTEENPNHDDE--IEAPIVLIDRINQTLQGIVDRKDKDLSKMSLHVHPFVAAYLKQG 478

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLF 563
             +  +++  R+   I +V         F
Sbjct: 479 IPSIQMKWFMRYKKWIKIVPRDAYKYLQF 507


>gi|320010838|gb|ADW05688.1| ribonuclease, Rne/Rng family [Streptomyces flavogriseus ATCC 33331]
          Length = 1397

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 124/348 (35%), Positives = 201/348 (57%), Gaps = 7/348 (2%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 717  GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 776

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L + W+
Sbjct: 777  SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWE 833

Query: 274  NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
             +++ A N   S AP L+Y E ++  R +RD++ +D S++IVSG+  +     ++  + P
Sbjct: 834  EIQKKAKNTSSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAP 893

Query: 331  SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                 + ++     +F    I+ QL      +V LPS G ++I++TEA+V +DVN+G+ T
Sbjct: 894  DLTDRLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFT 953

Query: 391  -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             +   +E+T  + NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +
Sbjct: 954  GQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 1013

Query: 450  DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            DR + QV  +++ GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 1014 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 1061



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 648 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 707

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 708 KGRNAVLYAGEV 719


>gi|33866677|ref|NP_898236.1| ribonuclease E [Synechococcus sp. WH 8102]
 gi|33633455|emb|CAE08660.1| ribonuclease E [Synechococcus sp. WH 8102]
          Length = 663

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/324 (33%), Positives = 177/324 (54%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P+  +G  ISR+I++  +R
Sbjct: 95  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVNISRRISSEAER 153

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT      + ++  D E L+R W+ +++ A  +  P L+ 
Sbjct: 154 NRLRA-LGVLIKPPGAGLLIRTEADGIAEDQLIDDLESLLRQWEAIQQAAETAAPPVLLN 212

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D+  ++V           F+          V  + +P  +    
Sbjct: 213 RDEDFINRILRDHTSTDLVRVVVDEPAAVARVSSFLGAEADKVL--VEAHSEPSELLEHF 270

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 271 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 330

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDM+ +++   + +    +++ D AR Q+  ++  GL+E++R
Sbjct: 331 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAVRDDAARPQIAQLTELGLVELTR 390

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 391 KRQGQNIYELFGRACPSCGGLGHV 414



 Score = 86.6 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 14 MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 67

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 68 NIGESEKNGFIHVTDLGP 85


>gi|172041049|ref|YP_001800763.1| ribonuclease E [Corynebacterium urealyticum DSM 7109]
 gi|171852353|emb|CAQ05329.1| ribonuclease E [Corynebacterium urealyticum DSM 7109]
          Length = 1190

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 139/574 (24%), Positives = 236/574 (41%), Gaps = 24/574 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
                   P    +   I + +++   ++VQ++K+  G+KGA +T  +S AGRY V  P  
Sbjct: 453  SEVNWHSPHLHSKSRRIDQALRSGDQVMVQVIKDPVGHKGARLTNRISFAGRYLVYFPG- 511

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272
                 ISRK+     ++ LKEI + +    G G I+RTA  +  +  I+ D   L + W 
Sbjct: 512  GTTAGISRKLPEAERKR-LKEILQRVVPGQG-GAIIRTAAENVAEELIEEDVNRLHKQWL 569

Query: 273  ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
                   +E       P  +YEE N++   IRDL+ +D SE++V G+K +R  +D+M  +
Sbjct: 570  NIEKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSELLVEGDKSWRMVRDYMGRM 629

Query: 329  MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P     V ++         +F    ++ QL      +V LPS G+++I+ TEA+  IDV
Sbjct: 630  APELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLPSGGHLVIDHTEAMTVIDV 689

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G        +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM  ++N   V ++L
Sbjct: 690  NTGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLEENQDLVLRRL 749

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
             E L +DR   +V  +++ GL++++R+R+ + +LE+ +  C  C G G I     V    
Sbjct: 750  IEYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCECCDGRGVIVHPDPVEQDF 809

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
                E        +                +++      E R G                
Sbjct: 810  SEEPERRRRSSRGNGRGRDERGS-------KEQRNGQGTEQRQGGR-GDQGSKNHGRDEQ 861

Query: 564  YIEKGSPVQALV---NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
              ++G          +         +  + D       +  +      S++  +   ++ 
Sbjct: 862  RDQRGKNATRHEDKGSKSKVANGKGREDAQDHRNSEGQERRSGKQRQDSQAGSESAADLG 921

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             E+       RR  RR  +  T        +           S D   E S         
Sbjct: 922  GEQKQETRTSRRGGRRSVQRRTSSSVKDATARTEQGSAEKKQSADRSDEASQSGQERAPR 981

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                        S       +  S+ ++  P +K
Sbjct: 982  RVVRRIVRRTAPSQQRGGAAQRRSAANADAPELK 1015



 Score = 87.3 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V V+ D ++ E    S+ ++ + GNIYL +V  V  S++AAF+D G  R+  L   E+
Sbjct: 396 TQVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAAFIDIGTGRNAVLYASEV 455

Query: 75  HP 76
           + 
Sbjct: 456 NW 457


>gi|81299687|ref|YP_399895.1| ribonuclease [Synechococcus elongatus PCC 7942]
 gi|81168568|gb|ABB56908.1| ribonuclease, Rne/Rng family [Synechococcus elongatus PCC 7942]
          Length = 808

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 119/345 (34%), Positives = 186/345 (53%), Gaps = 7/345 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE   +KG  +T  +SL GRY VLMP +S      R ++     
Sbjct: 136 ITELLAPQQKVLVQVMKEPTSSKGPRLTGNISLPGRYLVLMPYSSGVSLSRRIMSESERN 195

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +        L  PAGMG+++RT      +  I  D E L R W+   +LA ++ AP L+ 
Sbjct: 196 R--LRALSVLIKPAGMGLLVRTEADGIAEELIIEDLESLQRQWEQTLQLADSTPAPALLT 253

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + I+R +RD+Y + ++ I+V    G +  K  +             + QY D   I 
Sbjct: 254 RDDDFIQRVLRDMYDEGVNRIVVDSHTGLKRVKQHLSAWGAGEIAPGLLIEQYRDRSSIL 313

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GYVII +TEAL  +DVNSG  TR     +T L TN EA
Sbjct: 314 DYFRVNAAIREALKPRVDLPSGGYVIIEKTEALTVVDVNSGSFTRSATARETVLWTNCEA 373

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+I+VDFIDM+ +++   V +    +L+ D++R Q+  +S  GL+E
Sbjct: 374 AAEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFTRALRHDKSRPQISQLSELGLVE 433

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEE 509
           ++R+R   ++ E  +  CT C G G++        A  I+R+ + 
Sbjct: 434 LTRKRQGQNIYELFSTPCTTCGGLGHVAHLPGEVGAQPIVRTSDR 478



 Score = 85.8 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 1   MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  +++I     E+ R+  V  ++++EE            G+IYL  V  V P + AAFV
Sbjct: 55  MPKQIVI----AEQHRIAAVFAEDQIEEFIV--AKGTHQIGDIYLGVVENVLPGIDAAFV 108

Query: 60  DYG-GNRHGFLPFLEIHP 76
           + G   ++GF+   ++ P
Sbjct: 109 NIGDSEKNGFIHVTDLGP 126


>gi|56750671|ref|YP_171372.1| ribonuclease E [Synechococcus elongatus PCC 6301]
 gi|56685630|dbj|BAD78852.1| ribonuclease E [Synechococcus elongatus PCC 6301]
          Length = 808

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 119/345 (34%), Positives = 186/345 (53%), Gaps = 7/345 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE   +KG  +T  +SL GRY VLMP +S      R ++     
Sbjct: 136 ITELLAPQQKVLVQVMKEPTSSKGPRLTGNISLPGRYLVLMPYSSGVSLSRRIMSESERN 195

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +        L  PAGMG+++RT      +  I  D E L R W+   +LA ++ AP L+ 
Sbjct: 196 R--LRALSVLIKPAGMGLLVRTEADGIAEELIIEDLESLQRQWEQTLQLADSTPAPALLT 253

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + I+R +RD+Y + ++ I+V    G +  K  +             + QY D   I 
Sbjct: 254 RDDDFIQRVLRDMYDEGVNRIVVDSHTGLKRVKQHLSAWGAGEIAPGLLIEQYRDRSSIL 313

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GYVII +TEAL  +DVNSG  TR     +T L TN EA
Sbjct: 314 DYFRVNAAIREALKPRVDLPSGGYVIIEKTEALTVVDVNSGSFTRSATARETVLWTNCEA 373

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+I+VDFIDM+ +++   V +    +L+ D++R Q+  +S  GL+E
Sbjct: 374 AAEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFTRALRHDKSRPQISQLSELGLVE 433

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEE 509
           ++R+R   ++ E  +  CT C G G++        A  I+R+ + 
Sbjct: 434 LTRKRQGQNIYELFSTPCTTCGGLGHVAHLPGEVGAQPIVRTSDR 478



 Score = 85.8 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 1   MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           M  +++I     E+ R+  V  ++++EE            G+IYL  V  V P + AAFV
Sbjct: 55  MPKQIVI----AEQHRIAAVFAEDQIEEFIV--AKGTHQIGDIYLGVVENVLPGIDAAFV 108

Query: 60  DYG-GNRHGFLPFLEIHP 76
           + G   ++GF+   ++ P
Sbjct: 109 NIGDSEKNGFIHVTDLGP 126


>gi|317507074|ref|ZP_07964836.1| rne/Rng family ribonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316254617|gb|EFV13925.1| rne/Rng family ribonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 553

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 11/372 (2%)

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
           +N     G    +          I+  IK    LLVQ+ K+  G+KGA +TT ++LAGRY
Sbjct: 128 NNAVLYAGEVNWEGVGLGGDARKIEHAIKPGDYLLVQVNKDPVGHKGARLTTQIALAGRY 187

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF- 265
            V +P  S  + ISRK+ +    + L+EI  G+      GVI+RTA    +  ++  D  
Sbjct: 188 LVFVPGAS-AKGISRKLPDTERNR-LREILAGIVPE-DAGVIVRTASEGVSAEQLTEDVT 244

Query: 266 ---EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              E   R+     +       P  +Y E +L+ + IRD++ +D ++++V GE  +   +
Sbjct: 245 RLAEQWQRIQKAAEDAKGQGGGPRSLYREPDLLVKLIRDVFNEDFAKLVVQGENSHEVVQ 304

Query: 323 DFMKLLMPSYARIVRQYEDP---HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           +++  + P     + ++E       +F    ++ QL      +V LPS G ++I++TEA+
Sbjct: 305 EYLSAIAPDLGERLERFEPKAEGQDVFSEYRVDEQLAKALGRKVWLPSGGTLVIDRTEAM 364

Query: 380 VSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
             +DVN+G+       +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   
Sbjct: 365 TVVDVNTGKFVGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNREL 424

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           V ++L E L +DR R QV  +++ GL++M+R+RI + +LE+ +  C++C+G G I     
Sbjct: 425 VLRRLTECLARDRTRHQVSEVTSLGLVQMTRKRIGTGLLEAFSSKCSHCEGRGVIVHPDP 484

Query: 499 VALSILRSVEEY 510
           +   +       
Sbjct: 485 LGTELPEEGRHE 496



 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL DN + E    +     + GNIYL +V  V PS++AAFVD G   +  L   E+
Sbjct: 78  TQIGVLEDNVLVEHFVTTSASASMVGNIYLGRVQNVLPSMEAAFVDIGRGNNAVLYAGEV 137

Query: 75  HPD 77
           + +
Sbjct: 138 NWE 140


>gi|260655698|ref|ZP_05861171.1| ribonuclease G [Jonquetella anthropi E3_33 E1]
 gi|260629615|gb|EEX47809.1| ribonuclease G [Jonquetella anthropi E3_33 E1]
          Length = 495

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 124/491 (25%), Positives = 226/491 (46%), Gaps = 8/491 (1%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           D     V +  D  L ++        +   +  ++    +VS +        +       
Sbjct: 13  DEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGDGRNGFLY 72

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
                   +     L+VQ+ K  R +KGA VT  +SL GR+ V +P       +SRKI +
Sbjct: 73  LADAKGFSVHENGELIVQVTKTPRRSKGARVTPQVSLPGRFFVYLPFAG-SVGVSRKIGS 131

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             DR+ L+ +   +E     GVI+RTA       ++  D   L   W+ + + A   ++P
Sbjct: 132 AKDRQRLRALVGSVERG---GVIIRTAAQDAADEDLAADLAQLQEQWERIEQSAKLRMSP 188

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++++E   + RA+RD     ISE++    + +   K F+      ++  V   E    +
Sbjct: 189 GVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAVKGFVSAAGAGWSGQVSLLEKGIDL 248

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+  +++SL + +V LPS GY++I+QTEAL +IDVNSG+      +  T   TNLE
Sbjct: 249 FEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTAIDVNSGKCVDGSSLSATVKTTNLE 308

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA EIARQ+RLR + G+++VDFIDME + +  +V   LK++   D  +V+V  +++ GL 
Sbjct: 309 AAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLDALKDASAADPNKVRVYGMTSLGLA 368

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           E++R+R R  +    T+ C+ C   G      ++A S+ R + +     ++   +V  + 
Sbjct: 369 EVTRKRTRLDLRSQMTQPCSSCC-EGRTWKDEALAASVKRRLRKAFAGSSSGWALVAMND 427

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           ++   +    +  +  +E  FG  I +      +   + IE     + ++          
Sbjct: 428 ELAQIVA---QKWLKGWEETFGRRIVLRGLPGASRTDWRIEALGDSRKILTQAQSPWERE 484

Query: 586 QAPSYDKNIEC 596
           +     +  + 
Sbjct: 485 EPSRVYRTTDS 495



 Score = 93.9 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 1  MAN--KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          M    K+  +    EE RV V+ D R+ +L  E     Q  G+IYLA+V  +   + AAF
Sbjct: 1  MTQDVKIYANMLDEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAF 60

Query: 59 VDYGGNRHGFLPFLE 73
          ++ G  R+GFL   +
Sbjct: 61 LNLGDGRNGFLYLAD 75


>gi|326779383|ref|ZP_08238648.1| ribonuclease, Rne/Rng family [Streptomyces cf. griseus XylebKG-1]
 gi|326659716|gb|EGE44562.1| ribonuclease, Rne/Rng family [Streptomyces cf. griseus XylebKG-1]
          Length = 964

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 123/348 (35%), Positives = 202/348 (58%), Gaps = 7/348 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 268 GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 327

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +   +      VP   GVI+RTA    ++ E++RD E L + W+
Sbjct: 328 SMTG-ISRKLPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWE 384

Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           ++R+ A     S AP L+Y E ++  R +RD++ +D S++IVSG++ +     ++  + P
Sbjct: 385 DIRKKAKGTSGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAP 444

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
                + ++     +F    I+ QL      +V LPS G ++I++TEA++ +DVN+G+ T
Sbjct: 445 DLTERLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGKFT 504

Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
            +   +E+T  + NLEAAEEI RQLRLRDL G++VVDFIDM  + N   V ++L E L +
Sbjct: 505 GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 564

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
           DR + QV  +++ GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 565 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 612



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL DN + E     E      GN+YL KV  V PS++AAFVD G
Sbjct: 199 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 258

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 259 KGRNAVLYAGEV 270


>gi|313887009|ref|ZP_07820709.1| S1 RNA binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299883|ref|YP_004441804.1| ribonuclease, Rne/Rng family [Porphyromonas asaccharolytica DSM
           20707]
 gi|312923535|gb|EFR34344.1| S1 RNA binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176946|gb|AEE12636.1| ribonuclease, Rne/Rng family [Porphyromonas asaccharolytica DSM
           20707]
          Length = 527

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 132/572 (23%), Positives = 246/572 (43%), Gaps = 67/572 (11%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M ++++ID    +E  + VL D+ + EL       + I+   Y                 
Sbjct: 1   MNSELIIDVK-PKEVSMAVLEDDELVEL---RTENRNIR---Y----------------- 36

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                       +I                              D+V  G+     +   
Sbjct: 37  ---------AVGDI-------------------------LLGEVDNVVRGNNAAFVNIGP 62

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +   +          +      D+    +       ++     K    I   +K    +
Sbjct: 63  MKNGFLHYNDLGKVFGATTHLLEDIAEKKKVPPIDKVKEGTPLPKDGNIINSGLKKGDKI 122

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LV++ +E  G KG +++  LS+AGR+ VL+P + +    S   +     +   +      
Sbjct: 123 LVKVTREAFGTKGPSLSAELSIAGRFLVLVPFSDQVAISSEIRSTEERTR--LKTIVQSV 180

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           + +G G I+RT  A +   E+  +   L+  ++   +  + + AP  +YEE N     IR
Sbjct: 181 IKSGYGAIIRTQAAGKKTQELVEEMMDLIDRFETSIKKLVRAKAPTQIYEERNRAINLIR 240

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY--EDPHPIFFRSGIEVQLDSL 358
           D Y K  ++IIV+    Y+E + ++  + P   +IV  Y  +   P+F   G+  Q  +L
Sbjct: 241 DSYNKTFTKIIVNDPDYYKELRGYVADIDPGREQIVTLYEDDSKRPLFDACGVTKQKKTL 300

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLR 417
              +VTL +   +II QTEA+  IDVNS +  R     E+TA   N+  A+ IARQ+RLR
Sbjct: 301 FGRKVTLRNGANIIIEQTEAMHVIDVNSSKKARRTSGQEETAFDVNMAVADLIARQIRLR 360

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           DL G+IV+DFIDM E  +N+ + + + + +  DRA  ++  +S FGL++++RQR+R + +
Sbjct: 361 DLGGIIVIDFIDMNEAAHNKELYEHMVKLMANDRATHKILPLSKFGLMQITRQRVRQATI 420

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQ-- 534
             T + C  C+G+G I++  +    +   + +         N  +H H  VV Y+     
Sbjct: 421 IRTEETCPTCQGSGKIKTSITFTDDLEEIIAQLTSGDKPIRNFAMHLHPYVVAYIKKAPL 480

Query: 535 -KRATIVEYEARFGVSINVVIGIELADKLFYI 565
              +   +++ ++  +I ++   ++A   + I
Sbjct: 481 LGSSIFTKWKKKYSKNIKLIEDQDVALLDYKI 512


>gi|300741647|ref|ZP_07071668.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567]
 gi|300380832|gb|EFJ77394.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567]
          Length = 1171

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 142/630 (22%), Positives = 251/630 (39%), Gaps = 10/630 (1%)

Query: 85   DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
            DRQ L+++              +    V+     SL     +               +  
Sbjct: 394  DRQMLVRQKEGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 453

Query: 145  VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
               N     G    DV         I+  +K    +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 454  RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 513

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            R+ V +P  S    ISRK+ +    +  K +   L  P G GVI+RTA    ++ E+  D
Sbjct: 514  RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PDGAGVIVRTAAEGASEEELTHD 570

Query: 265  FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
               L   W+ ++E A +       ++Y+E +L+ + +RD++ +D + +IV G+  +   +
Sbjct: 571  INRLRTQWEEIQEKANSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIE 630

Query: 323  DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
             ++  + P     ++++ED   +F    I  QL      +V LPS G ++I++TEA+  +
Sbjct: 631  AYVTYVAPDLLSRLQKWEDEDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 690

Query: 383  DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
            DVN+G+ T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 691  DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 750

Query: 442  KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            +L E L +DR + QV  +++ GL++M+R+R+ + +LE  ++ C  C G G +     ++ 
Sbjct: 751  RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEQCDSCGGRGLLVHDQPLSG 810

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
                + +    Q           S        +   +  + E +      +      +  
Sbjct: 811  RSGGASDFIHRQERTERKRSRAASRNNTRDAAEGVDSEKD-EKKAERRNAMASIAAASHS 869

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
               +E             K    ++        E            +  S ED    +  
Sbjct: 870  ADELEAEDQANRKKRKRRKRSRRTETAELSLEQEIQGIKAGAKAHREVSSREDKVAEVTE 929

Query: 622  EE---STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             +     G     +      R     HDA    + S  + +                   
Sbjct: 930  TDWIGEQGDFTLEQLAVAFDRDLNPEHDARFTRESSRSEAIRAGEAKARASQKAGRITRS 989

Query: 679  LENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               G      +   +       E E+    
Sbjct: 990  ESGGFKSNQGDQSSAEQKSPRAERENLQVE 1019



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
            ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G  R+  L   E+
Sbjct: 406 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 465

Query: 75  HPD 77
           + D
Sbjct: 466 NWD 468


>gi|220912895|ref|YP_002488204.1| ribonuclease, Rne/Rng family [Arthrobacter chlorophenolicus A6]
 gi|219859773|gb|ACL40115.1| ribonuclease, Rne/Rng family [Arthrobacter chlorophenolicus A6]
          Length = 1151

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 118/417 (28%), Positives = 209/417 (50%), Gaps = 6/417 (1%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DRQ ++++ +            +    V+     SL     +               +  
Sbjct: 432 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 491

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    +      +Q  I+  +K+   +LVQ+ K+  G+KGA +T+ +SL G
Sbjct: 492 RGRNAVLYAGEVNWEAVNLEGKQRRIENALKSGDTVLVQVTKDPVGHKGARLTSQISLPG 551

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RY V +P  S    ISRK+ +    +  +       +P   GVI+RTA    ++ E+  D
Sbjct: 552 RYLVYVPGGSMTG-ISRKLPDVERNRLKR--ILKDRLPEQAGVIVRTAAEGASEEELTHD 608

Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              L   W+ +   + ++      L+Y E +L  + +RD++ +D S++IVSGE+ +   +
Sbjct: 609 INRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIE 668

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            ++  + P     + ++     IF    I+ Q+    + +V LPS G ++I++TEA+  +
Sbjct: 669 AYVTYVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVV 728

Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           DVN+G+ T     +E+T  + NLEAAEE+ RQLRLRD+ G+IV+DFIDM  + N   V +
Sbjct: 729 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 788

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           ++ E L +DR + QV  +++ GL++M+R+R+ + +LE   + C  C G G +     
Sbjct: 789 RMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDDP 845



 Score = 90.8 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           + +I     +  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G 
Sbjct: 433 RQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 492

Query: 64  NRHGFLPFLEIHPD 77
            R+  L   E++ +
Sbjct: 493 GRNAVLYAGEVNWE 506


>gi|315656600|ref|ZP_07909487.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492555|gb|EFU82159.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 602

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 124/420 (29%), Positives = 216/420 (51%), Gaps = 10/420 (2%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
           + R+ + +E  + + D+      +  G +         +   + N      +  + S   
Sbjct: 28  ARRENVKREMVVRERDNLNQIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEA 87

Query: 144 -----DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
                    N     G    D      +   I+E +    ++LVQ+ K+  G+KGA +T+
Sbjct: 88  AFVDIGKGRNAVLYAGEVNWDAAGLNAKTGRIEEALNPGDLVLVQVTKDPIGHKGARLTS 147

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
            ++LAGR+ VL+P+ +    ISRK+     ++   +      +PAG GVI+RTA    T+
Sbjct: 148 QITLAGRHLVLVPSGAMTG-ISRKLPEEERKR--LKALLKTMIPAGYGVIVRTAAEGATE 204

Query: 259 IEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
            +++ D E L R+W+ +          P L++ E  L  R +RD++ +D   + + G+  
Sbjct: 205 EQLRADVERLTRIWEEIETKQRKTRNGPVLLHGEPELAVRVVRDIFNEDFRSLTIQGDNA 264

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++    +++ L P     ++ +E    IF    I+ QL    + +V LPS GY+II++TE
Sbjct: 265 WKTISKYVRDLSPELKDRLKHWEGEDDIFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTE 324

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+  IDVN+GR       +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N 
Sbjct: 325 AMTVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNR 384

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR R QV  +++ GL++M+R+R+   ++E+ +  C  C G G+I   
Sbjct: 385 DLVLRRLVECLGRDRTRHQVTEVTSLGLIQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 444



 Score = 91.2 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ VL D  + E       ++   GN+YL KV  V  S++AAFVD G  R+  L   E++
Sbjct: 47  QIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 106

Query: 76  PD 77
            D
Sbjct: 107 WD 108


>gi|212716706|ref|ZP_03324834.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660410|gb|EEB20985.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM
           16992]
          Length = 483

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 211/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   + +      +               +  
Sbjct: 2   DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 62  QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 122 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKVAPKDMGVIIRTAAEGASEEAITKD 178

Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G++ Y   
Sbjct: 179 LESLVRQWERITAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRI 238

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 239 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 298

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++DF+DM    N 
Sbjct: 299 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 358

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 359 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 418

Query: 497 SSVA 500
               
Sbjct: 419 EPTV 422



 Score = 95.8 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 14 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 73

Query: 75 HPD 77
          + D
Sbjct: 74 NWD 76


>gi|269957053|ref|YP_003326842.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305734|gb|ACZ31284.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM
           15894]
          Length = 1043

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 197/336 (58%), Gaps = 6/336 (1%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I++ +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P       ISRK+ +
Sbjct: 634 QPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVLVPGGGMTG-ISRKLPD 692

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA- 284
               + LK++ R +    G GVI+RTA    ++ E++ D E L   W  +   A  +   
Sbjct: 693 VERNR-LKKVLRDIVPE-GAGVIVRTAAEGASEEELRADVERLQNQWTGITTKAGRASTS 750

Query: 285 -PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
            P L+  E +L  R +RD++  D S +IV G+  ++E   +++ L P     V  + +  
Sbjct: 751 APALLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAWQEVAGYVEELAPDLRERVTSWTENT 810

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402
            +F    ++ QL      +V LPS G ++I++TEA+  IDVN+G+ T     +E+T  + 
Sbjct: 811 DVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGAGGTLEETVTRN 870

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR + QV  +++ 
Sbjct: 871 NLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSL 930

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           GL++M+R+R+   ++E+ ++ C +CKG G+I     
Sbjct: 931 GLVQMTRKRVGQGLVEAFSETCEHCKGRGFIVHAEP 966



 Score = 98.1 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     + +  + GN+YL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 564 TQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV 623

Query: 75  HPD 77
           + D
Sbjct: 624 NWD 626


>gi|298346947|ref|YP_003719634.1| ribonuclease E and G [Mobiluncus curtisii ATCC 43063]
 gi|304389342|ref|ZP_07371307.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298237008|gb|ADI68140.1| ribonuclease E and G [Mobiluncus curtisii ATCC 43063]
 gi|304327460|gb|EFL94693.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 602

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 124/420 (29%), Positives = 216/420 (51%), Gaps = 10/420 (2%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
           + R+ + +E  + + D+      +  G +         +   + N      +  + S   
Sbjct: 28  ARRENVKREMVVRERDNLNQIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEA 87

Query: 144 -----DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
                    N     G    D      +   I+E +    ++LVQ+ K+  G+KGA +T+
Sbjct: 88  AFVDIGKGRNAVLYAGEVNWDAAGLNAKTGRIEEALNPGDLVLVQVTKDPIGHKGARLTS 147

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
            ++LAGR+ VL+P+ +    ISRK+     ++   +      +PAG GVI+RTA    T+
Sbjct: 148 QITLAGRHLVLVPSGAMTG-ISRKLPEEERKR--LKALLKTMIPAGYGVIVRTAAEGATE 204

Query: 259 IEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
            +++ D E L R+W+ +          P L++ E  L  R +RD++ +D   + + G+  
Sbjct: 205 EQLRADVERLTRIWEEIETKQRKTRNGPVLLHGEPELAVRVVRDIFNEDFRSLTIQGDNA 264

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++    +++ L P     ++ +E    IF    I+ QL    + +V LPS GY+II++TE
Sbjct: 265 WKTISKYVRDLSPELKDRLKHWEGEDDIFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTE 324

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+  IDVN+GR       +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N 
Sbjct: 325 AMTVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNR 384

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR R QV  +++ GL++M+R+R+   ++E+ +  C  C G G+I   
Sbjct: 385 DLVLRRLVECLGRDRTRHQVTEVTSLGLIQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 444



 Score = 91.2 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ VL D  + E       ++   GN+YL KV  V  S++AAFVD G  R+  L   E++
Sbjct: 47  QIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 106

Query: 76  PD 77
            D
Sbjct: 107 WD 108


>gi|282896398|ref|ZP_06304419.1| Ribonuclease E and G [Raphidiopsis brookii D9]
 gi|281198686|gb|EFA73566.1| Ribonuclease E and G [Raphidiopsis brookii D9]
          Length = 691

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 123/329 (37%), Positives = 187/329 (56%), Gaps = 5/329 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  +++ GRY VLMP   KG  +SR+I N  +R
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITMPGRYVVLMP-YGKGVNLSRRIKNESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W+ +++ A ++ AP L+ 
Sbjct: 141 NRLRA-LAILIKPAGMGILVRTEAEGKPEEAIIEDLELLQKQWEVIQQEAASTRAPSLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346
            + + I+R +RD+Y  D++ I+V    G R  K +++             +      PI 
Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLRRVKQYLQNWSGGQTPQGVLLDHHRDRSPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+IVVDFIDME +++   V +   ++LK D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKTLKADKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
           ++R+R   ++ E   + C  C G G+I  
Sbjct: 380 LTRKRQGQNIYELFGESCPTCGGLGHIVH 408



 Score = 80.8 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ ++  V  +++++EL   + H     G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVTDLGP 72


>gi|27904808|ref|NP_777934.1| ribonuclease G [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396629|sp|Q89AH3|RNE_BUCBP RecName: Full=Putative truncated ribonuclease E; Short=RNase E
 gi|27904206|gb|AAO27039.1| ribonuclease G [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 410

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 155/394 (39%), Positives = 221/394 (56%), Gaps = 7/394 (1%)

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150
             +    A+ D     D+ + N    +  + I        E S+ +A  D          
Sbjct: 10  EIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYGEKKNGFLP 69

Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
                 +         R   I+ ++K  Q  +VQI KEERG KGA +TT++SLAG Y VL
Sbjct: 70  LKEISRNYFPNNCSNYRHLHIKNILKEGQECIVQIDKEERGTKGALLTTFISLAGNYLVL 129

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN    E ISRKI       +LK+I   L VP  MG+I+RT+G  R+   ++ D  + +
Sbjct: 130 MPNCPHLEGISRKIEGIDR-FHLKKIISMLMVPENMGIIIRTSGVGRSIETLQLDLNFRV 188

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + W  +++ A  + AP L+++E N++ R +RD   KDI EIIV   +    A+D+M  + 
Sbjct: 189 KNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDNPEILELARDYMFNMN 248

Query: 330 PSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            SY  + ++ Y    P+F    IE Q+++L +  V LPS G +II+ TEAL +ID+NS +
Sbjct: 249 CSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDYTEALTAIDINSSQ 308

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           ST+   IE+TA  TN EA  EIARQLRLRDL GLIV+DFIDM   K+ + +E  L + L+
Sbjct: 309 STKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKHQKMIELHLHQVLQ 368

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           KDRARVQVG+IS FGLLEMSRQ + S + +    
Sbjct: 369 KDRARVQVGSISQFGLLEMSRQCLGSPLKKINHN 402



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A  +++ R+ ++   ++ +L+ E+  KKQ K NIY  K+ R+EPSL+AAFVDYG
Sbjct: 2  RRMLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            ++GFLP  EI  +Y+
Sbjct: 62 EKKNGFLPLKEISRNYF 78


>gi|33864056|ref|NP_895616.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9313]
 gi|33635640|emb|CAE21964.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. MIT 9313]
          Length = 647

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 109/324 (33%), Positives = 177/324 (54%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G+KG  +T  L+L GRY VL P+  +G  ISR+  N    
Sbjct: 82  ITELLEPRQQVLVQVMKEPTGSKGPRLTGNLALPGRYLVLQPH-GQGVNISRR-INSEGE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++RT     ++  +  D E L+R W+ +++ A N++ P L+ 
Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEADGISEDLLIDDLEVLLRQWEAIQQAADNALPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D+  ++V+          F+    P+    V  + +   +    
Sbjct: 200 RDEDFIHRVLRDHVGPDLVRVVVNDAAAIERVSSFLGQEGPNVL--VEAHNESTELLEHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR      T L TN EAA E
Sbjct: 258 RVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARQTVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDME +++   + +    +++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMESRRDQLQLLEHFTAAVRDDAARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPACGGLGHV 401



 Score = 85.8 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  +L D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----SEQLRIAALLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|269218644|ref|ZP_06162498.1| putative S1 RNA binding domain protein [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211755|gb|EEZ78095.1| putative S1 RNA binding domain protein [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 940

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 147/618 (23%), Positives = 253/618 (40%), Gaps = 47/618 (7%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R+ L++E +     +    D +    V      S+     +               +   
Sbjct: 329 REMLIREQDGLNQIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIGK 388

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
             N     G    +      R   I++ +K+   ++VQ+ K+  G+KGA +T  ++LAGR
Sbjct: 389 GRNAVLYAGEVNWEAAGLEGRPRRIEQALKSGDTVVVQVTKDPIGHKGARLTAQITLAGR 448

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VL+P+ +    ISRK+ +   ++  +       VPA  GVI+RTA    ++ +++ D 
Sbjct: 449 HLVLVPSGAMTG-ISRKLPDKERQRLKR--LLREIVPAEHGVIVRTAAEGTSEDQLRADV 505

Query: 266 EYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
           E L + W +++  A N+  AP L+  E  L  R +RD++ +D   + + G K +R   ++
Sbjct: 506 ERLAKTWQDIQTKAKNTKGAPMLLKGEPELAVRVVRDIFNEDFQSLKIQGAKAWRTISEY 565

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           +  L P  ++ +  +     IF    ++ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 566 VAELSPELSQRLEHWTGASDIFASHRVDEQLAKAFDRKVWLPSGGTLVIDRTEAMTVIDV 625

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G+ T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L
Sbjct: 626 NTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRELVLRRL 685

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E L +DR R QV  +++ GL++M+R+R+   ++E+ + VC  C+G GYI   + V    
Sbjct: 686 VECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYIIHSNPVERGD 745

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
             + +    +  A         +                                     
Sbjct: 746 GGADKRARNKQAAKQSASEPRDE------------------------------------- 768

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
                 P    V       + +    +D+N E    D A      ++  E        + 
Sbjct: 769 -----GPKHDDVKAALHSIAAAAQSKHDENSEPGDSDSAQDSAKSADDAEGRTAEDGEDS 823

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             G  + R R +   +        GV        +V     D                  
Sbjct: 824 KPGTAKARNRTKASAKKQGTKKAKGVQGKRGKAASVQAAEADEADGAGQADIPGEASEQG 883

Query: 684 HGFTENYDVSIPPVSTPE 701
                    S  P   PE
Sbjct: 884 QAEFAERAESFSPGDAPE 901



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            +MLI        ++ VL D+ + E       +  + GN+YL +V  V PS++AAFVD G
Sbjct: 329 REMLIREQDGLN-QIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIG 387

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ +
Sbjct: 388 KGRNAVLYAGEVNWE 402


>gi|17231823|ref|NP_488371.1| ribonuclease E [Nostoc sp. PCC 7120]
 gi|17133467|dbj|BAB76030.1| ribonuclease E [Nostoc sp. PCC 7120]
          Length = 687

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 120/326 (36%), Positives = 187/326 (57%), Gaps = 5/326 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++L GRY VLMP   +G  +SR+I +  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W+ +++ A ++ AP L+ 
Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQKQWEAIQQEAQSTRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + I+R +RD+Y  D++ I+V    G +  K +++            +  + D  PI 
Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSGGQTPQGLLIDHHRDRSPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+IVVDFIDME +++   V +   ++L+ D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKALRADKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGY 492
           ++R+R   ++ E     C  C G G+
Sbjct: 380 LTRKRQGQNIYELFGDTCPACGGLGH 405



 Score = 80.8 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ ++  V  +++++EL   + H     G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVTDLGP 72


>gi|261405390|ref|YP_003241631.1| ribonuclease, Rne/Rng family [Paenibacillus sp. Y412MC10]
 gi|261281853|gb|ACX63824.1| ribonuclease, Rne/Rng family [Paenibacillus sp. Y412MC10]
          Length = 411

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/342 (30%), Positives = 180/342 (52%), Gaps = 2/342 (0%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +       + K+ K++  I +++   Q L+VQ++KE RG KGA VTT+ SL GR  V MP
Sbjct: 69  IDDVLHPHLEKQPKQKPSISQLLTAGQELIVQVMKEPRGGKGARVTTHFSLPGRCMVYMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    +   +    +   +           G+I+RT         IK D EYL + 
Sbjct: 129 TADYVAVSKKIGRDAERAR--LKSIGEQLRTDEEGIIIRTVSEDEPLEFIKGDLEYLRKE 186

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + + A ++  P L++ +  L++R +RD +     E+++  ++   E K ++K  +P 
Sbjct: 187 WARILDKAESAPVPALLHRDLGLLQRFLRDAFDPLHDELVIDSKQKGEETKSYLKETVPG 246

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V  Y +  PIF   G++ Q+ +    ++TLP    ++++QTEA+  IDVN+ +   
Sbjct: 247 MEPKVTYYSEGGPIFQAYGLDEQMRASFARKITLPEGVTIVVDQTEAMTIIDVNTAKYIG 306

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
               E+T L+TNL AA++IAR LRL D+ G+I+VDFIDM+ +++ + V   ++  ++KDR
Sbjct: 307 GDNFEETVLKTNLLAAQQIARILRLWDIGGIIIVDFIDMDHEEHRQQVVSVMEAVMRKDR 366

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            +  V   +  GLLEM+R++ R S      K C  C G G +
Sbjct: 367 TKSFVVGWTKLGLLEMTRKKARESSSLPFAKPCGTCGGRGVV 408



 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 11 HVE-ET-RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
          H E ET ++ ++ D R+ E   E   ++ + G+ Y  +V  V P +QAAFVD G  ++ F
Sbjct: 7  HCEHETIQMALIEDGRLAEFAVERSREQSVVGSFYKGRVVNVLPGMQAAFVDIGLKKNAF 66

Query: 69 LPFLEI-HPDYYQIPF 83
          L   ++ HP   + P 
Sbjct: 67 LYIDDVLHPHLEKQPK 82


>gi|75907504|ref|YP_321800.1| ribonuclease E and G [Anabaena variabilis ATCC 29413]
 gi|75701229|gb|ABA20905.1| Ribonuclease E and G [Anabaena variabilis ATCC 29413]
          Length = 687

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 120/326 (36%), Positives = 187/326 (57%), Gaps = 5/326 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++L GRY VLMP   +G  +SR+I +  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W+ +++ A ++ AP L+ 
Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQKQWEAIQQEAQSTRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + I+R +RD+Y  D++ I+V    G +  K +++            +  + D  PI 
Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSGGQTPQGLLIDHHRDRSPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+IVVDFIDME +++   V +   ++L+ D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKALRADKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGY 492
           ++R+R   ++ E     C  C G G+
Sbjct: 380 LTRKRQGQNIYELFGDTCPACGGLGH 405



 Score = 80.8 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ ++  V  +++++EL   + H     G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVTDLGP 72


>gi|213966157|ref|ZP_03394343.1| ribonuclease E [Corynebacterium amycolatum SK46]
 gi|213951172|gb|EEB62568.1| ribonuclease E [Corynebacterium amycolatum SK46]
          Length = 1236

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 145/582 (24%), Positives = 243/582 (41%), Gaps = 49/582 (8%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G     +     R   I+  +K    +LVQ+ K+  G+KGA +TT++S+AGR+ V +P  
Sbjct: 508  GDLNWKLLGTKSRSRKIEHALKAGDQILVQVSKDPIGHKGARLTTHISMAGRFLVYVPG- 566

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++   +       P G G I+RTA    +K  I+ D + L   W 
Sbjct: 567  GRSAGISRKLPEPERKR--LKSILSEVTPEGSGTIIRTAAEGVSKEAIEADIKRLESQWQ 624

Query: 274  NVRELALNSV-----APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
             + E +  +       P  +YEE +++ + +RD++ +D S ++V G++ +    D++  L
Sbjct: 625  EIWEASEAAKAKRGAKPIALYEEPDMLVKVVRDVFNEDFSRLVVEGDRPWNTVTDYIGDL 684

Query: 329  MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P     +++Y         +F    I+ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 685  APELEPRLQRYFAKEHGGADVFEHFRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDV 744

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 745  NTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 804

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            KE+L +DR+R +V  +++ GL++M+R+R+ + +LE+ +  C+ C G G I     V    
Sbjct: 805  KEALGRDRSRHEVSEVTSLGLVQMTRKRLGTGLLETFSTPCSCCNGRGLIIHIDPV---- 860

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
                 E   Q   H               N +R        R   S              
Sbjct: 861  -----EQDNQGRGHK--------------NGRRNEEQGKSKRRNKS-RSEHNPANHPAAL 900

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             + +    QA  +T                 +          I  SE+ E          
Sbjct: 901  AMHRNQGDQAGSSTATLDDDAETNQRDRDAADKRVAAAVEAVIVSSENDEPKPPRRRRVR 960

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVS------------SIQNVIDDSFDMYMEPS 671
             +      +R+  R R      +    +                 ++  + S D YM   
Sbjct: 961  KSQSRDDEQRQNGRGRQERRERNEQSDNSNDLAALAAAAVAEAREKDPEEPSDDRYMPKE 1020

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                               D +  P +  +  S+    +P  
Sbjct: 1021 GQRRRRRATRRRAVRRTAVDETTAPQAESQTASTTDVREPAK 1062



 Score = 81.6 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T V VL D+ + E    S+ +    GNIYL +V  V PS++AAF+D G +R+G +   ++
Sbjct: 451 TEVGVLEDDLLVEHFVTSDTQTTQIGNIYLGRVQNVLPSMEAAFIDIGTDRNGVIYVGDL 510

Query: 75  HP 76
           + 
Sbjct: 511 NW 512


>gi|291569312|dbj|BAI91584.1| ribonuclease E [Arthrospira platensis NIES-39]
          Length = 750

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 204/413 (49%), Gaps = 10/413 (2%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           +Q ++ E    +  +    D++    V   N    +    I        + + ++  +  
Sbjct: 3   KQIIIAEQ--HRIAAVFSEDEIQELVVATGNQQVSDIYLGIVENVLPGIDAAFVNIGDPE 60

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
            +    V    P  + +       I E++  +Q +LVQ++KE  G KG  +T  ++L GR
Sbjct: 61  RNGFIHVSDLGPLRLKRSS---GSITELLMPQQKVLVQVMKEPTGTKGPRLTGNITLPGR 117

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VLMP   +G  +SR+I +  +R  L+     L  P+GMG+++RT      +  I  D 
Sbjct: 118 YLVLMP-YGRGVNLSRRIRSEAERNRLRA-LAILIKPSGMGLLVRTEAEGMAEDAILEDL 175

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           E L + W+ V++ A ++  P L+  + + I+R +RD+Y  +++ I+V    G +  K  +
Sbjct: 176 EALQKQWEEVQQEATSTRPPALLNRDNDFIQRVLRDMYSTEVNRIVVDSADGIKRVKQHL 235

Query: 326 KLLMPSYARIVRQYEDPHPIF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
                         +             +   +    +  V LPS GY+II  TEAL  I
Sbjct: 236 VNWSVGKTPQGVLIDHHRERIPILEYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSG  TR     +T L TN EAA EIARQLRLR++AG+I+VDFIDM+ +++   V + 
Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEH 355

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
             + LK D++R Q+  +S  GL+E++R+R   ++ E   + C  C G G++  
Sbjct: 356 FNKVLKADKSRPQIAQLSELGLVELTRKRQGQNIYELFGRSCPTCNGLGHLIH 408



 Score = 87.3 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  V  ++ ++EL        Q   +IYL  V  V P + AAFV
Sbjct: 1  MSKQIII----AEQHRIAAVFSEDEIQELVV--ATGNQQVSDIYLGIVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVSDLGP 72


>gi|167947753|ref|ZP_02534827.1| Ribonuclease E and G [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 290

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 156/279 (55%)

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           LV+E+  L  R++RDL   D+ ++ +     + +A +F++  +P   R V  Y    P+F
Sbjct: 9   LVHEDLPLALRSLRDLVGPDVEKVRIDSRSTHGKAIEFVQQFIPEIKRQVEYYPGERPVF 68

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G+E ++    + +V L S G+++I+QTEA+ +IDVN+G       +E+T  +TNLEA
Sbjct: 69  ELYGVEDEIQKALERQVQLKSGGHLVIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 128

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+ I RQLRLR+L G+I++DFIDM + ++ R V + L+  L  D AR  +  +S+ GL+E
Sbjct: 129 AQAICRQLRLRNLGGIIIIDFIDMTDPEHRRQVLRALERCLSHDHARTHITEVSSLGLVE 188

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R R S+     + C  C G G  ++  ++   I R +     Q+   +++V    +
Sbjct: 189 MTRKRTRDSLEHILCQPCPCCAGRGSTKTAETICYEIFREILREARQFDVESLLVIASQE 248

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V+  LL+++ + + E E   G  I +   +    + F +
Sbjct: 249 VIDRLLDEEASHLAELEQFIGRPIRLQAEVLYGQEHFDV 287


>gi|319949123|ref|ZP_08023215.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4]
 gi|319437195|gb|EFV92223.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4]
          Length = 1044

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 116/352 (32%), Positives = 200/352 (56%), Gaps = 10/352 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +      +   I++ +K+  ++LVQ+ K+  G KGA ++T +SLAGR+ V +P+ 
Sbjct: 565 GEVNWEAAGLGGKARRIEQALKSGDMVLVQVTKDPVGQKGARLSTQISLAGRFLVYVPD- 623

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   R+   +      VP G GVI+RTA    +  EI RD E L   W 
Sbjct: 624 GNSTGISRKLPDTERRR--LKGILKEVVPEGSGVIIRTAAEGVSAEEIGRDVERLAAQWT 681

Query: 274 NVRELALNSVA-----PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + E A          P  +YEE +L+ + +RDL+ +D S++++ GE  +     ++  +
Sbjct: 682 EISEAAAKRTESGSGTPVALYEEPDLLVKVVRDLFNEDFSKLVIQGETSWNTVHGYVSRV 741

Query: 329 MPSYARIVRQYEDPH-PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
            P     + ++++P   +F    ++ QL      +V LPS G ++I++TEA+  IDVN+G
Sbjct: 742 APEMVDRLERHDNPDVDVFATHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTG 801

Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           + T     +E+T  + NLEAAEEI RQLRLRD+ G++++DFIDM  + N   V ++L E+
Sbjct: 802 KYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDVGGMVIIDFIDMVLEANRDLVLRRLTEA 861

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           L +DR R QV  +++ GL++++R+++ + ++E+ +  C +C+G G I     
Sbjct: 862 LGRDRTRHQVSEVTSLGLVQLTRKKLGTGLVEAFSTPCEHCQGRGLIVHADP 913



 Score = 96.2 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 14  ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
            T+V VL D  + E    +E  + + GN+YL +V  V PS++AAFVD G  R+G L   E
Sbjct: 507 MTQVGVLEDKVLVEHFVTTESARSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGE 566

Query: 74  IHPD 77
           ++ +
Sbjct: 567 VNWE 570


>gi|262201995|ref|YP_003273203.1| ribonuclease, Rne/Rng family [Gordonia bronchialis DSM 43247]
 gi|262085342|gb|ACY21310.1| ribonuclease, Rne/Rng family [Gordonia bronchialis DSM 43247]
          Length = 1123

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 198/376 (52%), Gaps = 14/376 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 569 GEVNWDAAGLDGGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGG 628

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++ LK+I   L      GVI+RTA    +  E+  D   L   W 
Sbjct: 629 SSTG-ISRKLPDVERKR-LKQILAKLVPA-DAGVIIRTASEGVSAEELGADIARLEAKWR 685

Query: 274 NVRELALNSVAPH------LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327
           ++ E    +           +YEE +L+ R +RDL+ +D  +++V G K +   + ++  
Sbjct: 686 SIDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAWNLVEGYVGS 745

Query: 328 LMPSYARIVRQYEDPH----PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
           + P     V ++E PH      F    I+ QL      +V LPS G +II  TEA+  +D
Sbjct: 746 VAPDLMDRVEKFEKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVD 805

Query: 384 VNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           VN+G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+I+VDFIDM  + N   V ++
Sbjct: 806 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRR 865

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           L E+L +DR R QV  +++ GL++M+R+R+ + +LE+ +  CT C G G I   + V + 
Sbjct: 866 LTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRGVIVHANPVEVR 925

Query: 503 ILRSVEEYLLQYTAHN 518
              +         +  
Sbjct: 926 SEEAGRVEGGSKRSRR 941



 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E    +     + GNIYL +V  V P ++AAFVD G  R+G L   E+
Sbjct: 512 TQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEV 571

Query: 75  HPD 77
           + D
Sbjct: 572 NWD 574


>gi|20807392|ref|NP_622563.1| ribonuclease G and E [Thermoanaerobacter tengcongensis MB4]
 gi|20515912|gb|AAM24167.1| Ribonucleases G and E [Thermoanaerobacter tengcongensis MB4]
          Length = 472

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 136/455 (29%), Positives = 227/455 (49%), Gaps = 15/455 (3%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED-------VKGGSPE 158
           D     +    D  L+E  P     +            +V+  ++         K     
Sbjct: 12  DEKLCQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIGLNKNAFLF 71

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
                 +    I +V+K  Q ++VQ+ KE  G K   VTT +S+ G Y VLMP       
Sbjct: 72  LEDVVGREDKSITQVLKPGQEVMVQVTKEAIGLKSPRVTTNISIPGEYVVLMPFM-NYVN 130

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           +S +I NP DR  L EIAR L+   GMG+I+RT+  +  + EIK D E L+ +++ ++E 
Sbjct: 131 VSHRIENPADRAKLAEIARRLKPE-GMGLIMRTSSKNAKEEEIKEDIEKLLSVYEKIKEN 189

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
                +P L+Y E ++  + +RD    D+ EI+++ E+ Y +   ++K +      ++ +
Sbjct: 190 FKLLPSPSLIYSEESIAVKYLRDFLSYDVDEIVINDEEEYEKVNQYLKKIGKDIEIVLER 249

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
            +         G++ Q++ L    V L S G+++I+QTEAL  IDVN+G+   +  +E+T
Sbjct: 250 GDVSGI----YGVDFQVEKLLNKRVWLKSGGFLVIDQTEALTVIDVNTGKYVGKSSLEET 305

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TNLEAAEEIA QL+LRD+ G+I++DFIDM+ +   + + +  KE LK+DRA+  V  
Sbjct: 306 IFKTNLEAAEEIALQLKLRDIGGIILIDFIDMKNENFKKELLEFFKEKLKQDRAKCTVLG 365

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            +  GL+EM+R+++R  +       C  C G G + S+  +   +   +E  L       
Sbjct: 366 FTQLGLVEMTRKKVREEISSFLKVKCPVCGGTGTVYSEEYIYKRLKNQIERILRHVLVKK 425

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           +IV     V   L   ++  I EYE   G+ +   
Sbjct: 426 VIVKGDKKVGEIL--SRKKLIEEYEKSRGIKLIFE 458



 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +++ID       ++  L D +++E   E ++ K I GNIY  KV  V   +QAAFVD G
Sbjct: 5  KRLIIDIDEKL-CQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIG 63

Query: 63 GNRHGFLPFLEI 74
           N++ FL   ++
Sbjct: 64 LNKNAFLFLEDV 75


>gi|118472999|ref|YP_888890.1| ribonuclease, Rne/Rng family protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174286|gb|ABK75182.1| ribonuclease, Rne/Rng family protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 1037

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/428 (30%), Positives = 219/428 (51%), Gaps = 15/428 (3%)

Query: 83  FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
             D+         A+    AV +D    +  + +  S   V  I     +    S+ +A 
Sbjct: 386 VRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAF 445

Query: 143 NDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
            D+      V   G    +      +   I++ +K    ++VQ+ K+  G+KGA +TT +
Sbjct: 446 VDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQV 505

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGRY V +P  S    ISRK+ +   ++   +      VP+  GVI+RTA     + +
Sbjct: 506 SLAGRYLVYVPGASSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEED 562

Query: 261 IKRDFEYLMRLWDNVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           I+ D E L + W  +           + A   +YEE +++ + IRDL+ +D S +IVSG+
Sbjct: 563 IRSDVERLQKRWSEIEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSSLIVSGD 622

Query: 316 KGYREAKDFMK----LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371
           + +     +++     LMP   +      D   +F    I+ QL      +V LPS G +
Sbjct: 623 EAWNTINSYVEAVAPDLMPRLTKYEPAGPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTL 682

Query: 372 IINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           +I++TEA+  +DVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM
Sbjct: 683 VIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDM 742

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
             + N   V ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  CT+C G 
Sbjct: 743 VLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTACTHCGGR 802

Query: 491 GYIRSQSS 498
           G +     
Sbjct: 803 GIVLHGDP 810



 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 402 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 461

Query: 75  HPD 77
           + +
Sbjct: 462 NWE 464


>gi|227548738|ref|ZP_03978787.1| ribonuclease E [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079205|gb|EEI17168.1| ribonuclease E [Corynebacterium lipophiloflavum DSM 44291]
          Length = 743

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 15/406 (3%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162
           +D    +  + +D +   +  I     +    S+ +A  D+  N   V   G        
Sbjct: 258 EDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGVLYAGEVDWKAAG 317

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
              R   I++ +K+   ++VQ+ K+  G+KGA +TT +SLAGRY V +P   +   ISRK
Sbjct: 318 LGGRSRRIEQALKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYLVYVPG-GRSAGISRK 376

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE----- 277
           +  P  ++ LKEI   +    G G I+RTA    ++  I  D   L   W+ ++E     
Sbjct: 377 LPAPERKR-LKEILAKVVPGKG-GAIIRTAAEGVSEEAIAADVTRLHNQWETLQEQAERE 434

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
            +     P  +YEE NL+ + +RDL+ +D S++IV G++ +     ++  + P     + 
Sbjct: 435 KSSKGAKPVTLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHAYVSSVAPDLEDRLV 494

Query: 338 QYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392
           +Y+         F    ++ Q+       V LPS G ++I++TEA+  IDVN+G+ T   
Sbjct: 495 RYDRAAHDGQDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSG 554

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             +E+T  + NLEAAEEI RQ+RLRD+ G+I+VDFIDM   +N   V ++LKE+L +DR 
Sbjct: 555 GSLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRRLKEALGRDRT 614

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           R QV  +++ GL++M+R+R+ + +LE+ +  C  C G G I +   
Sbjct: 615 RHQVSEVTSLGLVQMTRKRLGTGLLETFSTPCECCGGRGIIVADDP 660



 Score = 96.6 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query: 11  HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
           H   T+V VL D  + E    S+    + GNIYL +V  V PS++AAF+D G NR+G L 
Sbjct: 248 HGTITQVGVLEDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGVLY 307

Query: 71  FLEI 74
             E+
Sbjct: 308 AGEV 311


>gi|87301874|ref|ZP_01084708.1| ribonuclease E [Synechococcus sp. WH 5701]
 gi|87283442|gb|EAQ75397.1| ribonuclease E [Synechococcus sp. WH 5701]
          Length = 713

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 110/324 (33%), Positives = 180/324 (55%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GR+ VL P   +G +ISR+I+   +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLTLPGRFLVLQP-QGQGVSISRRISGENER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT     ++ ++  D E L+R W+ ++E A  +  P L+ 
Sbjct: 141 NRLRA-LGVLIKPPGAGLLVRTEAEGVSEDQLIDDLETLLRQWEGIQEAAETATPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RDLY  ++  ++V           F+     +    V  + D   +    
Sbjct: 200 RDEDFIHRVLRDLYSPEVWRVVVDTPAAVARVNAFLGADQANLL--VEHHGDGTDVLEHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 RVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSASSRETVLWTNCEAAAE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G++++DFIDME +++   + +   +S++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVVIIDFIDMESRRDQLMLLEHFTQSVQDDAARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D RV+EL       +   G++YL +V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLNDERVDELVV--AQGRYQIGDVYLGRVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|119485463|ref|ZP_01619791.1| ribonuclease E [Lyngbya sp. PCC 8106]
 gi|119457219|gb|EAW38345.1| ribonuclease E [Lyngbya sp. PCC 8106]
          Length = 724

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 134/548 (24%), Positives = 239/548 (43%), Gaps = 22/548 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++L GRY VLMP   +G  +SR+I +    
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIRS-ETE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N  +    L  P+GMG+++RT      +  I  D E L + W+NV++ A ++  P L+ 
Sbjct: 140 RNRLKALAILIKPSGMGLLVRTEAEGMAEDAILEDLESLQKQWENVQQEASSTRPPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346
            + + I+R +RD+Y  D++ I+V    G +  K  +       A      +         
Sbjct: 200 RDDDFIQRVLRDMYSGDVNRIVVDVHTGIKRVKQHLMNWSVGKAPQGVLIDHHRERIPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY++I  TEAL  IDVNSG  TR     +T L TN E+
Sbjct: 260 EYFRVNAAIREALRPRVDLPSGGYIVIEPTEALTVIDVNSGSFTRSATSRETVLWTNCES 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+I+VDFIDM+ +++   V +   + LK D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNKVLKADKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   + C  C G G++         +   + E  +  ++ +    +   
Sbjct: 380 LTRKRQGQNIYELFGRPCPTCSGLGHLVHLPGELAEV--ELPESSISSSSSSNSSSSAER 437

Query: 527 VVLYLLNQKR-ATIVEYEARFGVSINVVIGIELADKL----------FYIEKGSPVQALV 575
           +VL   N    ++    E +   ++ +      ++              +E  +      
Sbjct: 438 IVLTPRNSLSVSSPETTEQQLAKTVILDAPQTRSEPETVELDAVSNLQELELINHPSYQD 497

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
           +TG       +    D +      + +   +  + +    ++    + S G+  +     
Sbjct: 498 HTGSNARRRRRRRIGDLDSLVREDEPSRNNLRLTPTSGYNENRSEIQLSEGLPSRSGLAE 557

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM----EPSDITNHNLLENGAHGFTENYD 691
           R R   ++               +  D   MY      P  +++     +     T    
Sbjct: 558 RSRTAKSETLKPTTEPPEVVSVEMTTDEQQMYAMMGISPLMLSSQTPKNSRNVIVTVCLP 617

Query: 692 VSIPPVST 699
              PP   
Sbjct: 618 GEEPPEPK 625



 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  V  +++++EL   +        +IYL  V  V P + AAFV
Sbjct: 1  MSKQIII----AEQHRIAAVFSEDQIQELVVATGSH--QVSDIYLGVVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDAERNGFIHVSDLGP 72


>gi|254774544|ref|ZP_05216060.1| Rne protein [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 749

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 195/388 (50%), Gaps = 19/388 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 204 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 263

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W 
Sbjct: 264 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWK 320

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A+             YEE +++ + IRDL+ +D + +IVSG+  +    +++  +
Sbjct: 321 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSV 380

Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     V +YE            +F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 381 APDLVSKVTKYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 440

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEA EEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 441 VIDVNTGKFTGSGGNLEQTVTKNNLEAVEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 500

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 501 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPV 560

Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHS 525
             A S  R  E    +            
Sbjct: 561 DSAPSNGRKSESGGRRGRRKKSKAEEPV 588



 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 147 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 206

Query: 75  HPDYYQIPFSDRQ 87
           + +   +  SDR+
Sbjct: 207 NWEAAGLGGSDRK 219


>gi|84498597|ref|ZP_00997360.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649]
 gi|84381130|gb|EAP97015.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649]
          Length = 1003

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 113/344 (32%), Positives = 195/344 (56%), Gaps = 12/344 (3%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
             R   I+  + +   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+
Sbjct: 463 QNRAKRIENAMGSGDTVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTG-ISRKL 521

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
            +    +   +      VP   GVI+RTA    ++ E++ D E L + W+ +++    + 
Sbjct: 522 PDTERAR--LKAILKEVVPEHAGVIVRTAAEGASEEELRADVERLTKAWEKIQQKVAAAS 579

Query: 284 APH--------LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
           +          L++ E +L  R IRD++ +D SE+IVSG++ + E   +++ + P  A+ 
Sbjct: 580 SKKAGSGGAPVLLHGEADLTVRVIRDVFTEDFSELIVSGDQAWAEVSGYVEDVAPDLAKR 639

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHC 394
           +  +     +F    ++ Q+      +V LPS G ++I++TEA+  +DVN+G+       
Sbjct: 640 LTHWTSEEDLFSHHRVDEQISKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGN 699

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
           +E+T  + N+EAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR + 
Sbjct: 700 LEETVTKNNIEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKH 759

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           QV  +++ GL++M+R+R+ S ++E  ++ C +C G G I     
Sbjct: 760 QVAEVTSLGLVQMTRKRVGSGLIEVFSEQCEHCAGRGIIVQSEP 803



 Score = 96.2 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     E    + GN+YL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 395 TQIGVLEDGVLVEHYVSRETNASMAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV 454

Query: 75  HPD 77
           + D
Sbjct: 455 NWD 457


>gi|254414757|ref|ZP_05028522.1| ribonuclease, Rne/Rng family protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196178605|gb|EDX73604.1| ribonuclease, Rne/Rng family protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 689

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 219/494 (44%), Gaps = 30/494 (6%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
           +R   I E++  +Q +LVQ++KE  GNKG  +T  +SL GRY VLMP   +G  +SR+I 
Sbjct: 77  RRSGAITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMP-YGRGVNLSRRIK 135

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           N  +R  L+     L  PAGMG+++RT    R +  I  D E L R W+ +++ A ++ A
Sbjct: 136 NENERNRLRA-LAVLIKPAGMGLLVRTEAEGRAEEAIMEDLEALQRQWEAIQQEATSTRA 194

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+  + + I+R +RD+Y  D++ I+V    G +  K  +       +      +    
Sbjct: 195 PALLNRDDDFIQRVLRDMYTADVNRIVVDSNTGVKRVKQQLVSWSGGRSPEGVLIDHHRD 254

Query: 345 IF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
                    I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L 
Sbjct: 255 RLSILDYFRINAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSGSFTRSATARETVLW 314

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TN EAA EIARQLRLR++AG+I+VDFIDM+ +++   V +   ++LK D+AR Q+  +S 
Sbjct: 315 TNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNKALKMDKARPQIAQLSE 374

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL-SILRSVEEYLLQYTAHNII 520
            GL+E++R+R   ++ E   + C  C G G++          + +  E            
Sbjct: 375 LGLVELTRKRQGQNIYELFGRTCPSCGGLGHLVHLPGEPEPQVQQEPETISRVEIPETPD 434

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG---SPVQALVNT 577
           +    D+  +          E E              L    +  E+G      +     
Sbjct: 435 LPEPLDIPGF------NEPDELE--------------LNHPSYQ-ERGIPNGTNRRRRRR 473

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
             +       P    N+  +   +    + +           V         +R  + + 
Sbjct: 474 RLEDVISKDEPVAKSNVRPITLSQRSSDVSEDVEGMRRDTTSVERPIVSDSSERVGKPQL 533

Query: 638 RRPATDHHDAGVVS 651
            R   +     V+ 
Sbjct: 534 IRSVVEMEPPEVIQ 547



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          MA +++I     E+ R   V  +++++EL   +       G+IYL  V  V P + AAFV
Sbjct: 1  MAKQIII----AEQYRLAAVFSEDQIQELVVATGSH--QVGDIYLGIVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDAERNGFIHVTDLGP 72


>gi|320093915|ref|ZP_08025753.1| ribonuclease E and G [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979152|gb|EFW10657.1| ribonuclease E and G [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 668

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/347 (35%), Positives = 197/347 (56%), Gaps = 5/347 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+PN 
Sbjct: 280 GEVNWDAVGLDGKPRRIESALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPNG 339

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       VP+G GVI+RTA    ++ +I+ D   L + W+
Sbjct: 340 SMMG-ISRKLPDKERARLKK--ILKQVVPSGSGVIVRTAAEGASEEQIRADVARLTKQWE 396

Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           +VR    +   AP L+  E  L  R +RD++ +D + +++ G   Y   K+++  L P  
Sbjct: 397 DVRAKQKSTRSAPALMRGEPELAVRVVRDIFNEDFTSLVIQGRGTYATVKEYVDELSPEL 456

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
           +  V Q+     +F    I+ QL      +V LPS G +II++TEA+  IDVN+G+    
Sbjct: 457 SDRVEQWVGADDVFHAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKYIGA 516

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++++DF+DM  + N   V ++L E L +DR
Sbjct: 517 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 576

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            R QV  I++ GL++M+R+R+   ++E+ +  C  C+G G+I     
Sbjct: 577 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSTQCGACEGRGFIVHSHP 623



 Score = 99.7 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++   H    ++ +L D+ + E        K   GNIYL +V  V PS++AAFVD G
Sbjct: 211 KRTMVIRDHEGLDQIAILEDDLLVEHYVARRTSKSAVGNIYLGRVQNVLPSMEAAFVDIG 270

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 271 RGRNAVLYAGEVNWD 285



 Score = 39.6 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 31/148 (20%), Gaps = 2/148 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P  A           + A    K      +  +          +          +    
Sbjct: 26  EPAGAGGPDEAPSRRSADAGDEPKEASPRRRRSSRTAPEDGAGADAKGVPDDDGAAGAPP 85

Query: 629 RKRRRRRRRR--RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           +KRR R+R     P+ D    G   D  +               +D    +  E    G 
Sbjct: 86  KKRRTRKRSSAEAPSADGEGTGPQEDGEAPAPKRRRRAKKEDSAADPQEQDAHEAEGEGG 145

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK 714
                         E     +     +K
Sbjct: 146 RRRRRRRPRSSDEAEAGGDLTDQVKALK 173


>gi|226360450|ref|YP_002778228.1| ribonuclease [Rhodococcus opacus B4]
 gi|226238935|dbj|BAH49283.1| putative ribonuclease [Rhodococcus opacus B4]
          Length = 1110

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/357 (33%), Positives = 202/357 (56%), Gaps = 11/357 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 500 GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 558

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272
                ISRK+ +   ++ LK+I R +      GVI+RTA    ++ E+ RD   L   W 
Sbjct: 559 GTSTGISRKLPDTERKR-LKDILRDIVPS-DAGVIIRTASEGVSEEELARDVTRLQEQWA 616

Query: 273 ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
                  +  +  S  P  +YEE +L+ + IRDL+ +D S++++ GEK +   + +++ +
Sbjct: 617 GIEAQAAKAESGKSGNPQALYEEPDLLVKVIRDLFNEDFSKLVIEGEKAWSTVESYIQSV 676

Query: 329 MPSYARIVRQYEDPH--PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
            P     ++Q+   +   +F    I+ QL      +V LPS G ++I++TEA+  +DVN+
Sbjct: 677 APDLMPRLKQHTSDNGVDVFEAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 736

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E
Sbjct: 737 GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 796

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           +L +DR R QV  +++ GL++M+R+++ + ++E+ +  C +C G G I     + + 
Sbjct: 797 ALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHAEPIEVK 853



 Score = 97.7 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E    +     + GN+YL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 443 TQVAVLEDGVLVEHFVTTSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 502

Query: 75  HPD 77
           + +
Sbjct: 503 NWE 505


>gi|296170489|ref|ZP_06852076.1| ribonuclease E [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894841|gb|EFG74563.1| ribonuclease E [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 945

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/391 (31%), Positives = 200/391 (51%), Gaps = 19/391 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 402 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 461

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W 
Sbjct: 462 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWR 518

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A              YEE +++ + IRDL+ +D + +IVSG++ +    D++  +
Sbjct: 519 QIEAKATEITEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDEAWTTITDYVNSV 578

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE P           F    I+ QL    + +V LPS G ++I++TEA+ 
Sbjct: 579 APDLVPKLSKYEPPSGPEGQAGPDVFAVHRIDEQLAKAMERKVWLPSGGTLVIDRTEAMT 638

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +DVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 639 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 698

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  CT+C G G +      
Sbjct: 699 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCTHCGGRGIVLHTDPV 758

Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
             A S  R  E    +             V 
Sbjct: 759 DSAPSNGRKSESGGRRGRRSKKNRAEEPVVA 789



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 345 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 404

Query: 75  HPDYYQIPFSDRQ 87
           + +   +  SDR+
Sbjct: 405 NWEAAGLGGSDRK 417


>gi|215412203|ref|ZP_03420965.1| ribonuclease E rne [Mycobacterium tuberculosis 94_M4241A]
          Length = 915

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 197/377 (52%), Gaps = 19/377 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 370 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 429

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 430 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 486

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A  +           YEE +++ + IRDL+ +D   +IVSG++ +    +++  +
Sbjct: 487 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 546

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 547 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 606

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 607 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 666

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L ESL +DR R QV  +++ GL++++R+R+R+ ++E+ +  C  C G G +      
Sbjct: 667 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLRTGLIEAFSTSCPNCSGRGILLHADPV 726

Query: 499 -VALSILRSVEEYLLQY 514
             A +  R  E    + 
Sbjct: 727 DSAAATGRKSEPGARRG 743



 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 313 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 372

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 373 NWDAAGLGGADRK 385


>gi|171741361|ref|ZP_02917168.1| hypothetical protein BIFDEN_00442 [Bifidobacterium dentium ATCC
           27678]
 gi|171276975|gb|EDT44636.1| hypothetical protein BIFDEN_00442 [Bifidobacterium dentium ATCC
           27678]
          Length = 482

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   + +      +               +  
Sbjct: 2   DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 62  QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 121

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 122 RFLVLVPSGGMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAITKD 178

Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D  ++IV GE+ Y   
Sbjct: 179 LESLVRQWERISAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRI 238

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 239 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 298

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++DF+DM    N 
Sbjct: 299 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 358

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 359 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 418

Query: 497 SSVA 500
               
Sbjct: 419 EPTV 422



 Score = 95.4 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 14 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 73

Query: 75 HPD 77
          + D
Sbjct: 74 NWD 76


>gi|124024063|ref|YP_001018370.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9303]
 gi|123964349|gb|ABM79105.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. MIT 9303]
          Length = 647

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/324 (33%), Positives = 177/324 (54%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G+KG  +T  L+L GRY VL P+  +G  ISR+  N    
Sbjct: 82  ITELLEPRQQVLVQVMKEPTGSKGPRLTGNLALPGRYLVLQPH-GQGVNISRR-INSEGE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +N       L  P G G+++RT     ++  +  D E L+R W+ +++ A N++ P L+ 
Sbjct: 140 RNRLRALGVLVKPPGAGLLVRTEADGISEDLLIDDLEVLLRQWEAIQQAADNALPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D+  ++V+          F+    P+    V  + +   +    
Sbjct: 200 RDEDFIHRVLRDHVGPDLVRVVVNDAAAIERVSSFLGQEGPNVL--VEAHNESTELLEHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR      T L TN EAA E
Sbjct: 258 RVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARQTVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDME +++   + +    +++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMESRRDQLQLLEHFTAAVRDDAARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPACGGLGHV 401



 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  +L D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----SEQLRIAALLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|329947026|ref|ZP_08294438.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526837|gb|EGF53850.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 986

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 144/586 (24%), Positives = 256/586 (43%), Gaps = 30/586 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      R   I++ + +   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 397 GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 456

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+ +    +  K       VP   GVI+RTA    ++ ++  D E L+  W+
Sbjct: 457 TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGASQEQLTADVERLVAQWE 513

Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           ++ +        +  AP L+  E  L  R IRD++ +D   +IVSG+  +     ++  +
Sbjct: 514 SIDKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRRLIVSGDTTWSTISQYVDEV 573

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P  A  +  +  P  +F    ++ QL      +V LPS G ++I++TEA+  IDVN+GR
Sbjct: 574 SPDLAERLEHWTGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 633

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L
Sbjct: 634 FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 693

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
            +DR R QV  +++ GL++M+R+R+   ++E+ +  C +CKG G+I     V       +
Sbjct: 694 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQ-QADM 752

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE--------------ARFGVSINVV 553
                +    +       +  +    +K A     E                 G  +   
Sbjct: 753 SASASRGGGRSRGRKNREEQAVAGGGKKGAKKDSQETKGSKSAKSSGGGKGAGGSDVVGS 812

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK---SE 610
                 D+     +G+  Q             Q     +  +     +  +       S+
Sbjct: 813 PEPGADDEARAAVRGALAQIAAAAEQAHKDAQQEGQESREAQDAKSPQGAVEDSAKSVSD 872

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
           S++D+ +    +E      + +  + R R AT+   A    D +  +     +     + 
Sbjct: 873 SVDDMVEPDGGQEGQVSPVEDKPVKTRARKATERKSARKSGDRADRKPGKKTAKKAEKKA 932

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +       ++G          S  PV      ++  S+ P  + +
Sbjct: 933 GNKPEELAEQSGE---APEEPTSEKPVRRTRRRATAKSAAPSPENS 975



 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ VL D  + E       +  + GN+Y+ +V  V PS++AAFVD G  R+  L   E++
Sbjct: 341 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 400

Query: 76  PD 77
            D
Sbjct: 401 WD 402


>gi|88807951|ref|ZP_01123462.1| ribonuclease E [Synechococcus sp. WH 7805]
 gi|88787990|gb|EAR19146.1| ribonuclease E [Synechococcus sp. WH 7805]
          Length = 647

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 108/324 (33%), Positives = 180/324 (55%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P + +G  IS++I++  +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISKRISSEGER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT     ++  +  D E LMR W+ +++ A  +  P L+ 
Sbjct: 141 NRLRA-LGVLVKPPGAGLLIRTEADEVSEELLIDDLESLMRQWEAIQKAAETASPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    ++S ++V           F+      ++  V  + +P  +    
Sbjct: 200 RDEDFIHRILRDHIAPELSRVVVDDPAAVERVTGFLGEEATHFS--VEAHGEPDELLEHF 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDM+ +++   + +    +++ D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAIRDDSARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACASCGGLGHV 401



 Score = 85.8 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL D+RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEQLRIAAVLTDDRVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|78185596|ref|YP_378030.1| ribonuclease E and G [Synechococcus sp. CC9902]
 gi|78169890|gb|ABB26987.1| RNAse E [Synechococcus sp. CC9902]
          Length = 646

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/324 (33%), Positives = 179/324 (55%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P+   G  ISR+I+   +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GLGVNISRRISAEAER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT     ++  +  D E L+R W+ +++ A  +V P L+ 
Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEAEGISEELLIDDLEALLRQWEAIQQAAETAVPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D++ ++V           F+   + +    V  +++   +    
Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVDEPAAVSRVGSFLGSELGNVV--VECHDESTELLEHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            I   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN+EAA E
Sbjct: 258 KINAAIRDALRPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNVEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDM+ +++   + +    + + D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTATRDDSARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401



 Score = 87.7 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MSQQIVI----AEQLRIAAVLSDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|298490082|ref|YP_003720259.1| ribonuclease, Rne/Rng family ['Nostoc azollae' 0708]
 gi|298232000|gb|ADI63136.1| ribonuclease, Rne/Rng family ['Nostoc azollae' 0708]
          Length = 713

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/326 (37%), Positives = 186/326 (57%), Gaps = 5/326 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++L GRY VLMP   +G  +SR+I +  +R
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMGV++RT    + +  I  D E L + W+ +++ A ++ AP L+ 
Sbjct: 141 NRLRA-LAILIKPAGMGVLVRTEAEGKPEEAIIEDLELLQKQWEVIQQEAQSTRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346
            + + I+R +RD+Y  D++ I+V    G R  K +++             +      PI 
Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLRRVKQYLQNWSGGQTPQGVLIDHHRDRSPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+IVVDFIDME +++   V +   +SLK D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKSLKADKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGY 492
           ++R+R   ++ E   + C  C G G+
Sbjct: 380 LTRKRQGQNIYELFGETCPTCGGLGH 405



 Score = 80.8 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ ++  V  +++++EL   + H     G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVTDLGP 72


>gi|111018324|ref|YP_701296.1| ribonuclease E/ G [Rhodococcus jostii RHA1]
 gi|110817854|gb|ABG93138.1| probable ribonuclease E/ G [Rhodococcus jostii RHA1]
          Length = 1134

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 117/357 (32%), Positives = 202/357 (56%), Gaps = 11/357 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 508 GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 566

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272
                ISRK+ +   ++ LK+I R +      GVI+RTA    ++ E+ RD + L   W 
Sbjct: 567 GTSTGISRKLPDTERKR-LKDILRDIVPS-DAGVIIRTASEGVSEEELARDVKRLQDQWA 624

Query: 273 ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
                  +  +  S  P  +YEE +L+ + IRDL+ +D S++++ G+K +   + +++ +
Sbjct: 625 GIEAQAAKAESGKSGNPQALYEEPDLLVKVIRDLFNEDFSKLVIEGDKAWSTVESYIRSV 684

Query: 329 MPSYARIVRQYEDPH--PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
            P     + Q+   +   +F    I+ QL      +V LPS G ++I++TEA+  +DVN+
Sbjct: 685 APDLMPRLEQHTSDNGVDVFEAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 744

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E
Sbjct: 745 GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 804

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           +L +DR R QV  +++ GL++M+R+++ + ++E+ +  C +C G G +     + + 
Sbjct: 805 ALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIVVHAEPIEVK 861



 Score = 97.4 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E    +     + GN+YL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 451 TQVAVLEDGVLVEHFVTTSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 510

Query: 75  HPD 77
           + +
Sbjct: 511 NWE 513


>gi|169628697|ref|YP_001702346.1| ribonuclease E [Mycobacterium abscessus ATCC 19977]
 gi|169240664|emb|CAM61692.1| Possible ribonuclease E Rne [Mycobacterium abscessus]
          Length = 959

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 131/486 (26%), Positives = 229/486 (47%), Gaps = 20/486 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K+   +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 441 GEVNWDAAGLGGSNRKIEQALKSGDYVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGA 500

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++ LKEI R +      GVI+RTA     + +I+ D + L   W 
Sbjct: 501 SSTG-ISRKLPDTERQR-LKEILRDIVPA-DAGVIIRTASEGVREEDIRADVQRLQEQWQ 557

Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + + A +  +        +YEE +++ + +RDL+ +D S++I+ G+  +    D++K +
Sbjct: 558 GIEQSATDLTSKASGAAVALYEEPDVLVKVVRDLFNEDFSKLIIEGDAAWDTIDDYVKTV 617

Query: 329 MPSYARIVRQYEDPHPI--FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
            P     + +YE       F    I+ QL      +V LPS G ++I++TEA+  +DVN+
Sbjct: 618 APDLLSRIERYESGEGPDVFAVHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 677

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           G+ T     +E+T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V ++L E
Sbjct: 678 GKFTGAGGNLEETVTRNNLEAAEEIVRQLRLRDVGGIVVIDFIDMVLESNRDLVLRRLTE 737

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS-----VA 500
           +L +DR R QV  +++ GL++++R+++ + ++E+ +  CT+C G G +           A
Sbjct: 738 ALGRDRTRHQVSEVTSLGLVQLTRKKLGTGLIEAFSSTCTHCAGRGIVLHVDPVDNASNA 797

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINVVIGIEL 558
            S  +  E       +          V     + +          A  G         ++
Sbjct: 798 SSPAKKAETGRRAKRSRK-GKTDDVVVARTPSHPQGEHPMFKAMAAANGHH-EDDEDADV 855

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
            +     +    V+ +      + S     +     E   +  +      SE   +    
Sbjct: 856 NEDALDDDALEEVEEVEEIVETIQSAETPDNVPDQDEPEHEPASAGSNAASEPWAEGAPE 915

Query: 619 IVSEES 624
             + E 
Sbjct: 916 AAATEP 921



 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 384 TQIAVLEDGVLVEHFVTSAASASLVGNIYLGVVQNVLPSMEAAFVDIGRGRNGVLYAGEV 443

Query: 75  HPD 77
           + D
Sbjct: 444 NWD 446


>gi|298525924|ref|ZP_07013333.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298495718|gb|EFI31012.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 953

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 197/377 (52%), Gaps = 19/377 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 408 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 467

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 468 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 524

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A  +           YEE +++ + IRDL+ +D   +IVSG++ +    +++  +
Sbjct: 525 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 584

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 585 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 644

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 645 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 704

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L ESL +DR R QV  +++ GL++++R+R+R+ ++E+ +  C  C G G +      
Sbjct: 705 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLRTGLIEAFSTSCPNCSGRGILLHADPV 764

Query: 499 -VALSILRSVEEYLLQY 514
             A +  R  E    + 
Sbjct: 765 DSAAATGRKSEPGARRG 781



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 351 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 410

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 411 NWDAAGLGGADRK 423


>gi|167969768|ref|ZP_02552045.1| ribonuclease E rne [Mycobacterium tuberculosis H37Ra]
 gi|215404382|ref|ZP_03416563.1| ribonuclease E rne [Mycobacterium tuberculosis 02_1987]
 gi|215427829|ref|ZP_03425748.1| ribonuclease E rne [Mycobacterium tuberculosis T92]
 gi|215431392|ref|ZP_03429311.1| ribonuclease E rne [Mycobacterium tuberculosis EAS054]
 gi|215446691|ref|ZP_03433443.1| ribonuclease E rne [Mycobacterium tuberculosis T85]
 gi|219558442|ref|ZP_03537518.1| ribonuclease E rne [Mycobacterium tuberculosis T17]
 gi|254551494|ref|ZP_05141941.1| ribonuclease E rne [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187453|ref|ZP_05764927.1| ribonuclease E rne [Mycobacterium tuberculosis CPHL_A]
 gi|260201572|ref|ZP_05769063.1| ribonuclease E rne [Mycobacterium tuberculosis T46]
 gi|260205750|ref|ZP_05773241.1| ribonuclease E rne [Mycobacterium tuberculosis K85]
 gi|294994446|ref|ZP_06800137.1| ribonuclease E rne [Mycobacterium tuberculosis 210]
 gi|297635052|ref|ZP_06952832.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 4207]
 gi|297732043|ref|ZP_06961161.1| ribonuclease E rne [Mycobacterium tuberculosis KZN R506]
 gi|306776715|ref|ZP_07415052.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu001]
 gi|306785241|ref|ZP_07423563.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu003]
 gi|306804196|ref|ZP_07440864.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu008]
 gi|306968599|ref|ZP_07481260.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu009]
 gi|307080531|ref|ZP_07489701.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu011]
 gi|313659379|ref|ZP_07816259.1| ribonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|308214876|gb|EFO74275.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu001]
 gi|308330063|gb|EFP18914.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu003]
 gi|308349184|gb|EFP38035.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu008]
 gi|308353805|gb|EFP42656.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu009]
 gi|308361699|gb|EFP50550.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu011]
          Length = 915

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 370 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 429

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 430 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 486

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A  +           YEE +++ + IRDL+ +D   +IVSG++ +    +++  +
Sbjct: 487 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 546

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 547 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 606

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 607 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 666

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L ESL +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 667 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 726

Query: 499 -VALSILRSVEEYLLQY 514
             A +  R  E    + 
Sbjct: 727 DSAAATGRKSEPGARRG 743



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 313 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 372

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 373 NWDAAGLGGADRK 385


>gi|118465085|ref|YP_880955.1| Rne protein [Mycobacterium avium 104]
 gi|118166372|gb|ABK67269.1| Rne protein [Mycobacterium avium 104]
          Length = 949

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 196/388 (50%), Gaps = 19/388 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 401 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 460

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W 
Sbjct: 461 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWK 517

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A+             YEE +++ + IRDL+ +D + +IVSG+  +    +++  +
Sbjct: 518 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSV 577

Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     V +YE            +F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 578 APDLVSKVTKYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 637

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 638 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 697

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 698 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPV 757

Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHS 525
             A S  R  E    +            
Sbjct: 758 DSAPSNGRKSESGGRRGRRKKSKAEEPV 785



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 344 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 403

Query: 75  HPDYYQIPFSDRQ 87
           + +   +  SDR+
Sbjct: 404 NWEAAGLGGSDRK 416


>gi|329928506|ref|ZP_08282374.1| putative ribonuclease G [Paenibacillus sp. HGF5]
 gi|328937765|gb|EGG34173.1| putative ribonuclease G [Paenibacillus sp. HGF5]
          Length = 416

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 106/342 (30%), Positives = 180/342 (52%), Gaps = 2/342 (0%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +       + K+ K++  I +++   Q L+VQ++KE RG KGA VTT+ SL GR  V MP
Sbjct: 74  IDDVLHPHLEKQPKQKPSISQLLTAGQELIVQVMKEPRGGKGARVTTHFSLPGRCMVYMP 133

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    +   +    +   +           G+I+RT         IK D EYL + 
Sbjct: 134 TADYVAVSKKIGRDAERAR--LKSIGEQLRTDEEGIIIRTVSEDEPLEFIKGDLEYLRKE 191

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + + A +++ P L++ +  L++R +RD +     E+++  +    E K ++K  +P 
Sbjct: 192 WARILDKAESALVPALLHRDLGLLQRFLRDAFDPLHDELVIDSKLKGEETKSYLKETVPG 251

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V  Y +  PIF   G++ Q+ +    ++TLP    ++++QTEA+  IDVN+ +   
Sbjct: 252 MEPKVTYYSEGGPIFQAYGLDEQMRASFARKITLPEGVTIVVDQTEAMTIIDVNTAKYIG 311

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
               E+T L+TNL AA++IAR LRL D+ G+I+VDFIDM+ +++ + V   ++  ++KDR
Sbjct: 312 GDNFEETVLKTNLLAAQQIARILRLWDIGGIIIVDFIDMDHEEHRQQVVSVMEAVMRKDR 371

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            +  V   +  GLLEM+R++ R S      K C  C G G +
Sbjct: 372 TKSFVVGWTKLGLLEMTRKKARESSSLPFAKPCGTCGGRGVV 413



 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 11 HVE-ET-RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
          H E ET ++ ++ D R+ E   E   ++ + G+ Y  +V  V P +QAAFVD G  ++ F
Sbjct: 12 HCEHETIQMALIEDGRLAEFAVERSREQSVVGSFYKGRVVNVLPGMQAAFVDIGLKKNAF 71

Query: 69 LPFLEI-HPDYYQIPF 83
          L   ++ HP   + P 
Sbjct: 72 LYIDDVLHPHLEKQPK 87


>gi|183983748|ref|YP_001852039.1| ribonuclease E Rne [Mycobacterium marinum M]
 gi|183177074|gb|ACC42184.1| ribonuclease E Rne [Mycobacterium marinum M]
          Length = 1017

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 114/359 (31%), Positives = 193/359 (53%), Gaps = 17/359 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 419 GEVNWDAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 478

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 479 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERWN 535

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A+             YEE +++ + IRDL+ +D + ++VSG+  +    +++  +
Sbjct: 536 QIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSV 595

Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE            +F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 596 APDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 655

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +DVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 656 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 715

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C +C G G +     
Sbjct: 716 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILLHADP 774



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 362 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 421

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 422 NWDAAGLGGADRK 434


>gi|306780489|ref|ZP_07418826.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu002]
 gi|306789600|ref|ZP_07427922.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu004]
 gi|306793927|ref|ZP_07432229.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu005]
 gi|308326638|gb|EFP15489.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu002]
 gi|308333903|gb|EFP22754.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu004]
 gi|308337706|gb|EFP26557.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu005]
          Length = 915

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 370 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 429

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 430 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 486

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A  +           YEE +++ + IRDL+ +D   +IVSG++ +    +++  +
Sbjct: 487 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 546

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 547 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 606

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 607 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 666

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L ESL +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 667 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 726

Query: 499 -VALSILRSVEEYLLQY 514
             A +  R  E    + 
Sbjct: 727 DSAAATGRKSEPGARRG 743



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 313 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 372

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 373 NWDAAGLGGADRK 385


>gi|25028828|ref|NP_738882.1| putative ribonuclease [Corynebacterium efficiens YS-314]
 gi|259507890|ref|ZP_05750790.1| ribonuclease E [Corynebacterium efficiens YS-314]
 gi|23494114|dbj|BAC19082.1| putative ribonuclease [Corynebacterium efficiens YS-314]
 gi|259164524|gb|EEW49078.1| ribonuclease E [Corynebacterium efficiens YS-314]
          Length = 1148

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 139/586 (23%), Positives = 242/586 (41%), Gaps = 29/586 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   I++ +K+ Q +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 426  GEVDWKAAGLGGRGRRIEQALKSGQKVLVQVTKDPVGHKGARLTTQISLAGRYLVYVPG- 484

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++ LKEI   +  P G G I+RTA    ++  I  D   L  LW+
Sbjct: 485  GRSAGISRKLPGPERKR-LKEILGRVVPPQG-GTIIRTAAEGVSEENIAADVNRLHTLWE 542

Query: 274  NVRELALNSV-----APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
             ++E            P  +YEE +++ + IRDL+ +D + +IV G++ +   + +++ +
Sbjct: 543  QIQERTKQEKKSRNTRPVTMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSV 602

Query: 329  MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P     V  ++         F   G+  QL+     +V LPS G +II++TEA+  ID+
Sbjct: 603  APDLVSRVEHFDRADYDGKDAFEAFGLNTQLEEAMSRKVNLPSGGSLIIDKTEAMTVIDI 662

Query: 385  NSGRSTREH--CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
            N+GR   +    +E+T    N+EAAEEI RQLRLRD+ G+IV+DFIDM   +N   V ++
Sbjct: 663  NTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGMIVIDFIDMVLPENRDLVLRR 722

Query: 443  LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            L E+L+ DR R QV  +++ GL++M+R+RI + +LE+ +  C +C G G +     V   
Sbjct: 723  LNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSECEHCAGRGLVIHPDPVDNV 782

Query: 503  ILR---SVEEYLLQYTAHNIIVHTHSDV-----------VLYLLNQKRATIVEYEARFGV 548
              R     EE   ++            V           +  L+  +   + +       
Sbjct: 783  DERVEAKAEERARRHKNQQEDSRPQQPVRDPARHPMVVAMQDLVEDEDHDLDKEFEDLAA 842

Query: 549  SINVVIGIELADKLF-YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            S+ +    E        ++     +  +     + +        +        +   P  
Sbjct: 843  SVIITDDAEDTADTAGTVDTADDTEPEITADEVISTVEPEEGPRRRARRRRGRQQETPET 902

Query: 608  KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
              E             +                 +  +     +  ++        F+  
Sbjct: 903  PVEPEATGDTTADDIAAIAAAAVDIADAEDPDEPSGANYVSDAAGAATSYEQALAEFEAS 962

Query: 668  MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                  T  N   + A    +           P        ++   
Sbjct: 963  PRRRRATRGNSRSDHAPKPEDFKSEPARREVEPIPVEEIGEAEEKP 1008



 Score = 87.3 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 1   MANKMLIDASHVEE-----TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55
           M  +M++      +     T+V VL D+ + E    S+ +  + GNIYL +V  V PS++
Sbjct: 350 MERRMIVRERQRTDGTGLVTQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSME 409

Query: 56  AAFVDYGGNRHGFLPFLEI 74
           AAF+D G  R+G L   E+
Sbjct: 410 AAFIDIGKGRNGVLYAGEV 428


>gi|326382839|ref|ZP_08204529.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395]
 gi|326198429|gb|EGD55613.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395]
          Length = 1039

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 139/526 (26%), Positives = 236/526 (44%), Gaps = 25/526 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +          I++ +K    +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 500  GEVNWEAAGLDGGSRKIEQALKPGDYVLVQVSKDPIGHKGARLTTQISLAGRYLVYVPG- 558

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   ++   +      VP   GVI+RTA    +  E+  D E L   W 
Sbjct: 559  GTSTGISRKLPDTERKR--LKQILAKLVPDEAGVIIRTASEGVSAEELGADIERLEAQWK 616

Query: 274  NVR-----ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++        +  S  P  +YEE +L+ R +RDL+ +D  +++V G++ + +   +++ +
Sbjct: 617  SIEAAADGHRSKASGTPKALYEEPDLLVRVVRDLFNEDFRKLVVEGDRAWSQVSGYVRDV 676

Query: 329  MPSYARIVRQYEDPH----PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P  +  + ++   H      F    I+ QL      +V LPS G +II  TEA+  +DV
Sbjct: 677  APDLSERLEEFTKNHADAPDSFAVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDV 736

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+I+VDFIDM  + N   V ++L
Sbjct: 737  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRL 796

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
             E+L +DR R QV  +++ GL++M+R+R+ + +LE+ +  CT C G G I   + V +  
Sbjct: 797  TEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTACSGRGVIVHANPVEVRP 856

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
                        + +                +  T      +                +F
Sbjct: 857  SEDSNRGGGSGESGSRRSRRSRKRGGDQPQSQTPTQQPESPKAAHK------PAAEHPMF 910

Query: 564  YI----EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                  ++      +V        +   P   +  E V  ++A     ++ + E      
Sbjct: 911  RAMAHPDEHDEATEVVEHADTAVVEQAEPVVAEQAEPVAVEQA--ERVETPAPEPSAPEA 968

Query: 620  VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
              E +    R+RR  RR   P T       V+  + +  V   S +
Sbjct: 969  PEEPAVVTRRRRRAVRRAAAPTTVAEPVAEVARQAPVTTVAQQSSE 1014



 Score =  101 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 12  VEE--TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69
             E  T++ VL D  + E    +E  + + GNIYL +V  V P ++AAFVD G  R+G L
Sbjct: 438 PTEDYTQIAVLEDGVLVEHFVTTETSQSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVL 497

Query: 70  PFLEIHPD 77
              E++ +
Sbjct: 498 YAGEVNWE 505


>gi|227547009|ref|ZP_03977058.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212541|gb|EEI80430.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 477

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 195/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 67  GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 126

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA    ++  I +D E L+R W+
Sbjct: 127 GMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWE 183

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  D S++IV G+K Y   ++++  + P
Sbjct: 184 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAP 243

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 244 DLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 303

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N   V ++L E
Sbjct: 304 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 363

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 364 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTV 418



 Score = 99.3 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 10 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 69

Query: 75 HPD 77
          + D
Sbjct: 70 NWD 72


>gi|15609581|ref|NP_216960.1| ribonuclease E [Mycobacterium tuberculosis H37Rv]
 gi|31793625|ref|NP_856118.1| ribonuclease E [Mycobacterium bovis AF2122/97]
 gi|121638327|ref|YP_978551.1| putative ribonuclease E rne [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662279|ref|YP_001283802.1| putative cytoplasmic axial filament protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148823646|ref|YP_001288400.1| ribonuclease E rne [Mycobacterium tuberculosis F11]
 gi|224990821|ref|YP_002645508.1| putative ribonuclease E [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798476|ref|YP_003031477.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 1435]
 gi|254232579|ref|ZP_04925906.1| ribonuclease E rne [Mycobacterium tuberculosis C]
 gi|289443970|ref|ZP_06433714.1| ribonuclease E rne [Mycobacterium tuberculosis T46]
 gi|289448088|ref|ZP_06437832.1| ribonuclease E rne [Mycobacterium tuberculosis CPHL_A]
 gi|289553764|ref|ZP_06442974.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 605]
 gi|289570599|ref|ZP_06450826.1| ribonuclease E rne [Mycobacterium tuberculosis T17]
 gi|289575139|ref|ZP_06455366.1| ribonuclease E rne [Mycobacterium tuberculosis K85]
 gi|289746227|ref|ZP_06505605.1| ribonuclease E rne [Mycobacterium tuberculosis 02_1987]
 gi|289751051|ref|ZP_06510429.1| ribonuclease E rne [Mycobacterium tuberculosis T92]
 gi|289754553|ref|ZP_06513931.1| ribonuclease E [Mycobacterium tuberculosis EAS054]
 gi|289758576|ref|ZP_06517954.1| ribonuclease E [Mycobacterium tuberculosis T85]
 gi|308374581|ref|ZP_07667816.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu006]
 gi|308375892|ref|ZP_07668143.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu007]
 gi|308379205|ref|ZP_07485488.2| ribonuclease E rne [Mycobacterium tuberculosis SUMu010]
 gi|308405114|ref|ZP_07494244.2| ribonuclease E rne [Mycobacterium tuberculosis SUMu012]
 gi|1666140|emb|CAB03775.1| POSSIBLE RIBONUCLEASE E RNE [Mycobacterium tuberculosis H37Rv]
 gi|31619218|emb|CAD97332.1| POSSIBLE RIBONUCLEASE E RNE [Mycobacterium bovis AF2122/97]
 gi|121493975|emb|CAL72452.1| Possible ribonuclease E rne [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124601638|gb|EAY60648.1| ribonuclease E rne [Mycobacterium tuberculosis C]
 gi|148506431|gb|ABQ74240.1| putative cytoplasmic axial filament protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148722173|gb|ABR06798.1| ribonuclease E rne [Mycobacterium tuberculosis F11]
 gi|224773934|dbj|BAH26740.1| putative ribonuclease E [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319979|gb|ACT24582.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 1435]
 gi|289416889|gb|EFD14129.1| ribonuclease E rne [Mycobacterium tuberculosis T46]
 gi|289421046|gb|EFD18247.1| ribonuclease E rne [Mycobacterium tuberculosis CPHL_A]
 gi|289438396|gb|EFD20889.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 605]
 gi|289539570|gb|EFD44148.1| ribonuclease E rne [Mycobacterium tuberculosis K85]
 gi|289544353|gb|EFD48001.1| ribonuclease E rne [Mycobacterium tuberculosis T17]
 gi|289686755|gb|EFD54243.1| ribonuclease E rne [Mycobacterium tuberculosis 02_1987]
 gi|289691638|gb|EFD59067.1| ribonuclease E rne [Mycobacterium tuberculosis T92]
 gi|289695140|gb|EFD62569.1| ribonuclease E [Mycobacterium tuberculosis EAS054]
 gi|289714140|gb|EFD78152.1| ribonuclease E [Mycobacterium tuberculosis T85]
 gi|308341387|gb|EFP30238.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu006]
 gi|308344874|gb|EFP33725.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu007]
 gi|308357755|gb|EFP46606.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu010]
 gi|308365309|gb|EFP54160.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu012]
 gi|323718952|gb|EGB28102.1| ribonuclease E rne [Mycobacterium tuberculosis CDC1551A]
 gi|326904059|gb|EGE50992.1| ribonuclease E rne [Mycobacterium tuberculosis W-148]
 gi|328458244|gb|AEB03667.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 4207]
          Length = 953

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 408 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 467

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 468 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 524

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A  +           YEE +++ + IRDL+ +D   +IVSG++ +    +++  +
Sbjct: 525 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 584

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 585 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 644

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 645 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 704

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L ESL +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 705 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 764

Query: 499 -VALSILRSVEEYLLQY 514
             A +  R  E    + 
Sbjct: 765 DSAAATGRKSEPGARRG 781



 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 351 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 410

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 411 NWDAAGLGGADRK 423


>gi|332711238|ref|ZP_08431171.1| ribonuclease, Rne/Rng family [Lyngbya majuscula 3L]
 gi|332350052|gb|EGJ29659.1| ribonuclease, Rne/Rng family [Lyngbya majuscula 3L]
          Length = 662

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 143/472 (30%), Positives = 228/472 (48%), Gaps = 21/472 (4%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
           +R   I E++  +Q +LVQ++KE  GNKG  +T  +SL GRY VLMP   +G  +SR+I 
Sbjct: 77  RRSGAITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMP-YGRGVNLSRRIK 135

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +  +R  L+     L  P+GMGV++RT    R +  I  D E L + W+ V+  A ++ A
Sbjct: 136 SESERNRLRA-LAILIKPSGMGVLVRTEAEGRAEEAIMEDLENLQKQWEAVQLEATSTRA 194

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+  + + I+R +RD+Y  D++ I+V      +  K  +       A      +    
Sbjct: 195 PALLNRDDDFIQRVLRDMYTADVNRIVVDSSTAVKRVKQHLLSWSGGQAPEGVLIDHHRD 254

Query: 345 IF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
                    +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L 
Sbjct: 255 RMPILAYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLW 314

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TN EAA EIARQLRLR+LAG+IVVDFIDM+ +++   V +   ++LK+D+AR Q+  +S 
Sbjct: 315 TNCEAATEIARQLRLRNLAGVIVVDFIDMDTRRDQLQVLEHFNQALKEDKARPQIAQLSE 374

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGY-------IRSQSSVALSILRSVEEYLLQY 514
            GL+E++R+R   ++ E   K C  C G G+       + +++   L+ + S  E  +  
Sbjct: 375 LGLVELTRKRQGQNIYELFGKACATCGGLGHLVHLPGEVEAEALETLAPIPSPTERSIPE 434

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
               + +   +D  L LLN                   +           + +  P+   
Sbjct: 435 FPEPVELSPENDQELDLLNHPSYQERGAVNNRRRRRRRIDDP--------VIREEPITRG 486

Query: 575 VNTGHKVGSDSQA-PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           VN    V S+  A    + +   V + + +    + E  E ++  +  EE  
Sbjct: 487 VNRVISVSSNFDAITEAEVSTSGVEKPQLVKFAQEKEPPELVRVEMSPEEQD 538



 Score = 77.3 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I   H       V  +++++EL   + +     G+IYL  V  V P + AAFV+
Sbjct: 1  MPKQIIIAEQHQL---AAVFWEDQIQELVVATGNH--QVGDIYLGVVENVLPGIDAAFVN 55

Query: 61 YGG-NRHGFLPFLEIHP 76
           G  +R+GF+   ++ P
Sbjct: 56 IGDPDRNGFIHVTDLGP 72


>gi|254365221|ref|ZP_04981267.1| ribonuclease E rne [Mycobacterium tuberculosis str. Haarlem]
 gi|134150735|gb|EBA42780.1| ribonuclease E rne [Mycobacterium tuberculosis str. Haarlem]
          Length = 953

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 408 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 467

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 468 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 524

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A  +           YEE +++ + IRDL+ +D   +IVSG++ +    +++  +
Sbjct: 525 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 584

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 585 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 644

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 645 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 704

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L ESL +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 705 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 764

Query: 499 -VALSILRSVEEYLLQY 514
             A +  R  E    + 
Sbjct: 765 DSAAATGRKSEPGARRG 781



 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 351 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 410

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 411 NWDAAGLGGADRK 423


>gi|282899031|ref|ZP_06307013.1| Ribonuclease E and G [Cylindrospermopsis raciborskii CS-505]
 gi|281196171|gb|EFA71086.1| Ribonuclease E and G [Cylindrospermopsis raciborskii CS-505]
          Length = 699

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 122/329 (37%), Positives = 187/329 (56%), Gaps = 5/329 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  +++ GRY VLMP   KG  +SR+I +  +R
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITMPGRYVVLMP-YGKGVNLSRRIKSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W+ +++ A ++ AP L+ 
Sbjct: 141 NRLRA-LAILIKPAGMGILVRTEAEGKPEEAIIEDLELLQKQWEVIQQEAASTRAPSLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346
            + + I+R +RD+Y  D++ I+V    G R  K +++             +      PI 
Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLRRVKQYLQNWSGGQTPQGVLLDHHRDRSPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+IVVDFIDME +++   V +   ++LK D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKTLKADKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
           ++R+R   ++ E   + C  C G G+I  
Sbjct: 380 LTRKRQGQNIYELFGESCPTCGGLGHIVH 408



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ ++  V  +++++EL   + H     G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVTDLGP 72


>gi|302206708|gb|ADL11050.1| Ribonuclease E/G family [Corynebacterium pseudotuberculosis C231]
 gi|308276950|gb|ADO26849.1| Ribonuclease E/G family [Corynebacterium pseudotuberculosis I19]
          Length = 1134

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 142/594 (23%), Positives = 245/594 (41%), Gaps = 31/594 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   I++ +K+   +LVQ+ K+  G+KGA +TT +S AGRY V +PN 
Sbjct: 415  GEVDWRAAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPN- 473

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P   +   +      VP   G I+RTA  + +   I  D   L +LW+
Sbjct: 474  GRTAGISRKLPAPERTR--LKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWN 531

Query: 274  NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326
             ++EL              +YEE N++ + +RDL+ +D SE+IV G++ +     +++  
Sbjct: 532  QIQELTEKEKNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSV 591

Query: 327  --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               L     +  R+  +    F    ++ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 592  APELQDRLIKFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 651

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 652  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMALSENQDLVLRRL 711

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
             E+L +DR R Q+  +++ GL++M+R+R+ + +LE+    C +C+G G I     V  S+
Sbjct: 712  TEALGRDRTRHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSV 771

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
              +  E   +  +          V                 +         G   +D   
Sbjct: 772  SDAAIEKSSRARSGKAKAARKHGVA---HQDPAQHPAAIAMQHHEEAGSAAGSNTSDAST 828

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
                 +                     +K ++ V  D A   + +    +  +       
Sbjct: 829  ADTSLAADTRTSIDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLR 888

Query: 624  STGVIRKRRRRRR--------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI-- 673
            ++    +               R    D  +      +    N +  S         +  
Sbjct: 889  NSKRKDRGAADDVMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAA 948

Query: 674  -TNHNLLENGAHGFTENYDVSIP----PVSTPEMESSNSSSDPIVKKTRWWKRR 722
              N    +    G + +     P     +   E    ++ +    ++T    RR
Sbjct: 949  FENSPRRKRAVRGNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRR 1002



 Score = 85.0 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    S+ +  + GNIYL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 358 TQVGVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEV 417


>gi|302528915|ref|ZP_07281257.1| predicted protein [Streptomyces sp. AA4]
 gi|302437810|gb|EFL09626.1| predicted protein [Streptomyces sp. AA4]
          Length = 1054

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 126/477 (26%), Positives = 220/477 (46%), Gaps = 15/477 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ +     +LVQ+ K+  G+KGA +TT +SL GR+ V +P  
Sbjct: 523 GEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAG 582

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+     R+   +      VP   GVI+RTA    ++ E+ RD + L   WD
Sbjct: 583 G-ATGISRKLPENERRR--LKDILKRIVPEDAGVIIRTASEGISEEELDRDVQRLKAQWD 639

Query: 274 NVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++E A         AP ++YEE +L+ + +RDL+ +D +++ V G   +     +++ +
Sbjct: 640 VIKEKASAGSAKKGGAPTMLYEEPDLLVKVVRDLFTEDFAKLEVQGSTAWETIHGYVQHV 699

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P     +++Y      F    I+ Q+      +V LPS GY++I++TEA+  IDVN+G+
Sbjct: 700 APDLTDRLKRYTGNGDAFADHRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK 759

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + NLE+AEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L
Sbjct: 760 FTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECL 819

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV-----ALS 502
            +DR R QV  +++ GL++M+R++I + +LE+ +  C +CKG G + S            
Sbjct: 820 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPCEHCKGRGVVVSTEPQRTAGGGTG 879

Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
              +       ++       +          +++    + E        V     +   +
Sbjct: 880 NGHNGGNGHNGHSHGGGDTKSSRRSRGRGKGEEQHHEPKPEPAAPAPTPVQRE-SVVSAV 938

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
             +   S  +   +      +     +   + +   Q E     P      +     
Sbjct: 939 QAMANASKAKHEHHAPEAAEAKEPETAAQPSEQGEQQPEPKTEAPAPVQQPEPTQPE 995



 Score = 96.2 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    S     I GN+YL +V  V PS++AAF+D G  R+  L   E+
Sbjct: 466 TQIAVLEDGVLVEHFVTSSGTGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEV 525

Query: 75  HPD 77
             D
Sbjct: 526 DWD 528


>gi|254371401|ref|ZP_04987402.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151569640|gb|EDN35294.1| hypothetical protein FTBG_01460 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 464

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 119/390 (30%), Positives = 212/390 (54%), Gaps = 2/390 (0%)

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
            V  +E     S E+   K      I + ++  Q +LVQ+VKE  GNKG  +T++LS++ 
Sbjct: 74  EVIPLEKEDDDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ V +P+        +       ++ L+ I +  +     G ILRTA    +  E++ D
Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            ++L  LW ++ +++   + P +VYE+ +LI + I      ++ +I+V     Y+E   F
Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               +P     +  Y   H IF    IE +++      V L S GY++I QTEA+++ID+
Sbjct: 254 ADKYIPGLREKIELY-QKHNIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G       +E+T  +TNLEA +EIARQLRLR+L G+I++DFIDM ++ +   V + LK
Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALK 372

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           + L+ D+A+  V  IS  GL+EM+R+R+  S+L +  + C +C G G +++  ++   I 
Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIF 432

Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLN 533
           R ++     Y + ++ ++ +   ++ Y+ N
Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEN 462



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E R+ +  +N ++E+  E +++K+I GNIY  K+ RV P +QAAFVD G  + GFL   E
Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74

Query: 74 IHP 76
          + P
Sbjct: 75 VIP 77


>gi|41408365|ref|NP_961201.1| Rne [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396721|gb|AAS04584.1| Rne [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 946

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 196/388 (50%), Gaps = 19/388 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 401 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 460

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W 
Sbjct: 461 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWK 517

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A+             YEE +++ + IRDL+ +D + +IVSG+  +    +++  +
Sbjct: 518 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSV 577

Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     V +YE            +F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 578 APDLVSKVTKYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 637

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 638 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 697

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +      
Sbjct: 698 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPV 757

Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHS 525
             A S  R  E    +            
Sbjct: 758 DSAPSNGRKSESGGRRGRRKKSKAEEPV 785



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 344 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 403

Query: 75  HPDYYQIPFSDRQ 87
           + +   +  SDR+
Sbjct: 404 NWEAAGLGGSDRK 416


>gi|86134969|ref|ZP_01053551.1| ribonuclease, Rne/Rng family [Polaribacter sp. MED152]
 gi|85821832|gb|EAQ42979.1| ribonuclease, Rne/Rng family [Polaribacter sp. MED152]
          Length = 516

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 119/422 (28%), Positives = 203/422 (48%), Gaps = 10/422 (2%)

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
                     +   I++V+K  Q LLVQIVKE    KG  +++ LS+AGR+ VL+P +++
Sbjct: 98  KNFRKEADINKDGSIKDVLKTGQNLLVQIVKEPISTKGPRLSSELSIAGRFLVLVPFSNR 157

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
                +        +  +        P G GVILRT    +   E+ +D +  +  W  +
Sbjct: 158 VSVSQKIADPKEKERLKR--LAKSIKPKGFGVILRTVAEGKKVAELDKDLQNSLERWKTM 215

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
            +   N+  P  +  E N     +RD+  +  + I+ + E    E K++++ + P   +I
Sbjct: 216 CKRIPNTNTPTKILSELNRASSILRDVMNESFTNIVTNDETLKVEIKEYLQEIYPEKEKI 275

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHC 394
           V+ ++   PIF + GIE Q+ +     V++    Y++I  TEAL  IDVNSG RS +   
Sbjct: 276 VKLHKSTVPIFEKYGIERQIKTSFGKTVSMSKGAYLVIEHTEALHVIDVNSGNRSNKAGS 335

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            EDTAL+ NL +A EIARQL+LRD+ G+IVVDFIDM + +N   + + LKE +  DR + 
Sbjct: 336 QEDTALEVNLISATEIARQLQLRDMGGIIVVDFIDMHKAENRNKLFQHLKEQMALDRTKH 395

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE----- 509
           ++   + FGL++++RQR+R  +   TT+      G   + +   +   I   +E+     
Sbjct: 396 KILPPTKFGLVQITRQRVRPELSIKTTEPNPNKDGQ--VEAPIVLLDKIEADLEKFISKL 453

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              + T   I +H H  +  YL     +   ++  +    I ++         +      
Sbjct: 454 ESSKSTNKKIQLHIHPFIAAYLTKGVNSVRFKWYLKHKKWITIIPRDAYTYLYYKFTSVK 513

Query: 570 PV 571
             
Sbjct: 514 EE 515


>gi|317124517|ref|YP_004098629.1| RNAse G [Intrasporangium calvum DSM 43043]
 gi|315588605|gb|ADU47902.1| RNAse G [Intrasporangium calvum DSM 43043]
          Length = 1012

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 119/358 (33%), Positives = 197/358 (55%), Gaps = 27/358 (7%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                I+  + + Q +LVQ+ K+  G+KGA +T+ +SL GRY V +PN+S    ISRK+ 
Sbjct: 472 NEPRRIENALSSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPNSSMTG-ISRKLP 530

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA----- 279
           +    +  K       VP   GVI+RTA    ++ E++ D E L R W+++R  A     
Sbjct: 531 DTERARLKK--ILREVVPDSAGVIVRTAAEGASEEELRADVERLSRTWEDIRARAELSGT 588

Query: 280 ------------------LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
                                 AP L++ E +L  R IRD++ +D  +++V+G++ + E 
Sbjct: 589 PRAGKSKGRKKNGSPGSAPTGSAPLLLHGEPDLTVRVIRDVFNEDFKQLVVAGDQAWNEI 648

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
             ++  + P  A  V ++     +F    ++ QL      +V LPS G ++I++TEA+  
Sbjct: 649 HPYISSVAPDLADRVSRWTAEEDLFTHHRVDEQLAKAMDRKVWLPSGGSLVIDRTEAMTV 708

Query: 382 IDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
           +DVN+G+       +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V 
Sbjct: 709 VDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVV 768

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           ++L E L +DR + QV  +++ GL++M+R+R+ S ++E  ++ C +C G GY+     
Sbjct: 769 RRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLIEVFSETCEHCNGRGYVIHADP 826



 Score = 97.0 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E   +      + GNIYL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 403 TQMGVLEDGVLVEHYIDQATNVSMAGNIYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV 462

Query: 75  HPD 77
           + D
Sbjct: 463 NWD 465


>gi|315645759|ref|ZP_07898883.1| ribonuclease, Rne/Rng family protein [Paenibacillus vortex V453]
 gi|315279237|gb|EFU42547.1| ribonuclease, Rne/Rng family protein [Paenibacillus vortex V453]
          Length = 396

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 105/342 (30%), Positives = 175/342 (51%), Gaps = 2/342 (0%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +       + K+ K++  I +++   Q L VQ++KE RG KGA VTT+ SL GR  V MP
Sbjct: 55  IDDVLHPHLEKQPKQKPSISQLLTVGQELTVQVMKEPRGGKGARVTTHFSLPGRCMVYMP 114

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    +        +   +           G+I+RT         +  D EYL + 
Sbjct: 115 TADYVAVSKKIGREAERAR--LKSIGEQLRTDEEGIIIRTVSEDEPLEFLSGDLEYLRKE 172

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  + E A +S AP L++ +  L++R IRD +     E+++       E K ++K  +P 
Sbjct: 173 WTRILEKAESSSAPALLHRDLGLLQRFIRDSFDPLHDELVIDSLLKGEETKSYLKETVPG 232

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               V  +    PIF   G++ Q+ +    ++TLP    ++++QTEA+  +DVN+ +   
Sbjct: 233 MEPKVTYHTGGGPIFQAYGLDEQMKAGFARKITLPEGVTIVVDQTEAMTIMDVNTAKYIG 292

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
               E+T L+TNL AA++IAR LRL D+ G+I+VDFIDM+ +++ + V   ++  ++KDR
Sbjct: 293 GDNFEETVLKTNLMAAQQIARTLRLWDIGGIIIVDFIDMDREEHRQQVVSVMEAVMRKDR 352

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            +  V   +  GLLEM+R++ R +      K C  C G G +
Sbjct: 353 TKSFVVGWTKLGLLEMTRKKARENSSLPFAKPCVNCGGKGIV 394



 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI-H 75
          + ++ D R+ E   E   ++ + G+ Y  +V  V P +QAAFVD G  ++ FL   ++ H
Sbjct: 1  MALIEDGRLAEFAVERSREESVVGSFYKGRVVNVLPGMQAAFVDIGLKKNAFLYIDDVLH 60

Query: 76 PDYYQIPF 83
          P   + P 
Sbjct: 61 PHLEKQPK 68


>gi|312140345|ref|YP_004007681.1| ribonuclease e and g [Rhodococcus equi 103S]
 gi|311889684|emb|CBH49001.1| putative ribonuclease E and G [Rhodococcus equi 103S]
          Length = 1157

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 133/502 (26%), Positives = 230/502 (45%), Gaps = 29/502 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    +      R+  I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 568  GEVNWEAAGLGGRERKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 626

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+ +   ++ LKEI R +      GVI+RTA    ++ E+ RD   L   W 
Sbjct: 627  GTSTGISRKLPDTERKR-LKEILREIVPA-DAGVIIRTASEGVSEEELSRDVTRLQTQWA 684

Query: 274  NVRELALNSVA-----PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
             + E A  +       P  +YEE +L+ + +RDL+ +D S++++ GEK +   + ++K +
Sbjct: 685  TIEEQAAKAKDGKSGSPQALYEEPDLLVKVVRDLFNEDFSKLVIEGEKAWNTVETYIKTV 744

Query: 329  MPSYARIVRQYED---PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
             P     V +++       +F    I+ QL      +V LPS G ++I++TEA+  +DVN
Sbjct: 745  APDLLPRVERHDPAPGTPDVFETHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVN 804

Query: 386  SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
            +G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+IV+DFIDM  + N   V ++L 
Sbjct: 805  TGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVIDFIDMVLESNRDLVLRRLT 864

Query: 445  ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS-- 502
            ESL +DR R QV  +++ GL++++R+++ + ++E+ +  C +C G G I     V     
Sbjct: 865  ESLGRDRTRHQVSEVTSLGLVQVTRKKLGTGLVEAFSTTCEHCHGRGIIVHTEPVETKSS 924

Query: 503  ---------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
                        S      +         T +       N + A     EA    ++   
Sbjct: 925  DDGGRGQGQGKESGGGGRKKRGRDRAAAATPAPTPEPESNGQHAHPSAEEAAADATVK-R 983

Query: 554  IGI-----ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
                               G   +       +    ++  +     +    D    P  +
Sbjct: 984  AHPVALAMASHHPDHDPSGGPAAEEAAPAAEEAAPAAEDATQTSPADVAQPDTVETPRTE 1043

Query: 609  SESLEDIQDNIVSEESTGVIRK 630
             E+  + Q        +    +
Sbjct: 1044 PEATPEPQATAEPTSESAPEPE 1065



 Score = 96.6 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E          + GN+YL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 511 TQVAVLEDGVLVEHFVTGSSSTSMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 570

Query: 75  HPD 77
           + +
Sbjct: 571 NWE 573


>gi|296394163|ref|YP_003659047.1| ribonuclease, Rne/Rng family [Segniliparus rotundus DSM 44985]
 gi|296181310|gb|ADG98216.1| ribonuclease, Rne/Rng family [Segniliparus rotundus DSM 44985]
          Length = 827

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 192/365 (52%), Gaps = 11/365 (3%)

Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
           +N     G    +          I+  IK    LLVQ+ K+  G+KGA +TT ++LAGRY
Sbjct: 386 NNAVLYAGEVNWEGVGLGGDARKIEHAIKPGDYLLVQVNKDPVGHKGARLTTQIALAGRY 445

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF- 265
            V +P  S  + ISRK+ +    +          VP   GVI+RTA    +   +  D  
Sbjct: 446 LVFVPGAS-AKGISRKLPDTERNR--LREILSGIVPEDAGVIVRTASEGVSAEHLTEDVT 502

Query: 266 ---EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              E   R+     E       P  +Y E +L+ + IRD++ +D + ++V GE  Y   +
Sbjct: 503 RLAEQWQRIQQLAEEAKAQGGGPRSLYREPDLLVKLIRDVFNEDFARLVVQGEGPYEVVQ 562

Query: 323 DFMKLLMPSYARIVRQYED---PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
           +++  + P     + ++E       +F    ++ QL      +V LPS G ++I++TEA+
Sbjct: 563 EYLSAIAPELGERLERFEPAEDGQDVFSAYRVDEQLAKALGRKVWLPSGGTLVIDRTEAM 622

Query: 380 VSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
             +DVN+G+       +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   
Sbjct: 623 TVVDVNTGKFVGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNREL 682

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           V ++L E L +DR R QV  +++ GL++M+R+RI + +LE+ +  C++C+G G +     
Sbjct: 683 VLRRLTECLARDRTRHQVSEVTSLGLVQMTRKRIGTGLLEAFSNKCSHCEGRGVVVHSDP 742

Query: 499 VALSI 503
           +   +
Sbjct: 743 LGTEL 747



 Score = 91.6 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL DN + E    +     + GNIYL +V  V PS++AAFVD G   +  L   E+
Sbjct: 336 TQIGVLEDNILVEHFVTTSASASMVGNIYLGRVQNVLPSMEAAFVDIGRGNNAVLYAGEV 395

Query: 75  HPD 77
           + +
Sbjct: 396 NWE 398


>gi|315655494|ref|ZP_07908393.1| ribonuclease E and G [Mobiluncus curtisii ATCC 51333]
 gi|315490149|gb|EFU79775.1| ribonuclease E and G [Mobiluncus curtisii ATCC 51333]
          Length = 804

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 139/566 (24%), Positives = 252/566 (44%), Gaps = 26/566 (4%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
           + R+ + +E  + + D+      +  G +         +   + N      +  + S   
Sbjct: 230 ARRENVKREMVVRERDNLNQIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEA 289

Query: 144 -----DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198
                    N     G    D      +   I+E +    ++LVQ+ K+  G+KGA +T+
Sbjct: 290 AFVDIGKGRNAVLYAGEVNWDAAGLNAKTGRIEEALNPGDLVLVQVTKDPIGHKGARLTS 349

Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258
            ++LAGR+ VL+P+ +    ISRK+     ++   +      +PAG GVI+RTA    T+
Sbjct: 350 QITLAGRHLVLVPSGAMTG-ISRKLPEEERKR--LKALLKTMIPAGYGVIVRTAAEGATE 406

Query: 259 IEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
            +++ D E L R+W+ +          P L++ E  L  R +RD++ +D   + + G+  
Sbjct: 407 EQLRADVERLTRIWEEIETKQRKTRNGPVLLHGEPELAVRVVRDIFNEDFRSLTIQGDNA 466

Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++    +++ L P     ++ +E    IF    I+ QL    + +V LPS GY+II++TE
Sbjct: 467 WKTISKYVRDLSPELKDRLKHWEGEDDIFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTE 526

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+  IDVN+GR       +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N 
Sbjct: 527 AMTVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNR 586

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR R QV  +++ GL++M+R+R+   ++E+ +  C  C G G+I   
Sbjct: 587 DLVLRRLVECLGRDRTRHQVTEVTSLGLIQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 646

Query: 497 SSVALS-------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
             V  +       +  S           +    + +  V     + R T+        ++
Sbjct: 647 VPVENNGQAPEDVVSHSSGRRGSTSGTSSKRGRSRAKSVKETNPEVRQTMAA------IA 700

Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                  E               +       + S ++ PS +K  E    +         
Sbjct: 701 TAAHASEEHEPPA---TALESHSSRSVEPKLLTSSTEKPSLEKAAEKPSIERGTEKPALD 757

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRR 635
            +   ++       +   + +RR RR
Sbjct: 758 GAQARLELTEAETPAENTVPRRRHRR 783



 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ VL D  + E       ++   GN+YL KV  V  S++AAFVD G  R+  L   E++
Sbjct: 249 QIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 308

Query: 76  PD 77
            D
Sbjct: 309 WD 310


>gi|300859010|ref|YP_003783993.1| ribonuclease E [Corynebacterium pseudotuberculosis FRC41]
 gi|300686464|gb|ADK29386.1| ribonuclease E [Corynebacterium pseudotuberculosis FRC41]
 gi|302331261|gb|ADL21455.1| Ribonuclease E/G family [Corynebacterium pseudotuberculosis 1002]
          Length = 1134

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 142/594 (23%), Positives = 245/594 (41%), Gaps = 31/594 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   I++ +K+   +LVQ+ K+  G+KGA +TT +S AGRY V +PN 
Sbjct: 415  GEVDWRAAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPN- 473

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P   +   +      VP   G I+RTA  + +   I  D   L +LW+
Sbjct: 474  GRTAGISRKLPAPERTR--LKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWN 531

Query: 274  NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326
             ++EL              +YEE N++ + +RDL+ +D SE+IV G++ +     +++  
Sbjct: 532  QIQELTEKEKNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSV 591

Query: 327  --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
               L     +  R+  +    F    ++ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 592  APELQDRLIKFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 651

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 652  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMALSENQDLVLRRL 711

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
             E+L +DR R Q+  +++ GL++M+R+R+ + +LE+    C +C+G G I     V  S+
Sbjct: 712  TEALGRDRTRHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSV 771

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
              +  E   +  +          V                 +         G   +D   
Sbjct: 772  SDAAIEKSSRARSGKAKAARKHGVA---HQDPAQHPAAIAMQHHEEAGSAAGSNTSDAST 828

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
                 +                     +K ++ V  D A   + +    +  +       
Sbjct: 829  ADTSPAADTRTSIDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLR 888

Query: 624  STGVIRKRRRRRR--------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI-- 673
            ++    +               R    D  +      +    N +  S         +  
Sbjct: 889  NSKRKDRGAADDVMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAA 948

Query: 674  -TNHNLLENGAHGFTENYDVSIP----PVSTPEMESSNSSSDPIVKKTRWWKRR 722
              N    +    G + +     P     +   E    ++ +    ++T    RR
Sbjct: 949  FENSPRRKRAVRGNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRR 1002



 Score = 85.0 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    S+ +  + GNIYL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 358 TQVGVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEV 417


>gi|300869451|ref|ZP_07114035.1| ribonuclease [Oscillatoria sp. PCC 6506]
 gi|300332543|emb|CBN59233.1| ribonuclease [Oscillatoria sp. PCC 6506]
          Length = 797

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 117/327 (35%), Positives = 185/327 (56%), Gaps = 5/327 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++L GRY VLMP   +G  +SR+I +  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIKSENER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT     T+  I  D E L + W+ V++   ++ AP L+ 
Sbjct: 141 NRLRA-LAILVKPAGMGLLVRTEAEGMTEEAIIEDLEVLQKQWEAVQQEGSSTRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346
            + + I+R +RD++  D++ I+V  + G +  K  +     +        +      P+ 
Sbjct: 200 RDDDFIQRVLRDMFSNDVNRIVVDSQNGIKRVKQHLMAWNGNKLPPGVLIDHHRERIPML 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRVNPAIREALRPRVDLPSGGYIIIQPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+I+VDFIDME +++   V +   ++L+ D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIIVDFIDMESRRDQLQVLEHFNKALRADKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI 493
           ++R+R   ++ E     C  C G G++
Sbjct: 380 LTRKRQGQNIYELFGHTCPSCGGLGHL 406



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R   V  +++++EL   +        +IYL  V  V P + AAFV
Sbjct: 1  MPKQIVI----AEQHRLAAVFSEDQIQELVVATGSH--QVSDIYLGIVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G  +R+GF+   ++ P
Sbjct: 55 NIGDPDRNGFMHVTDLGP 72


>gi|291457090|ref|ZP_06596480.1| putative cytoplasmic axial filament protein [Bifidobacterium breve
           DSM 20213]
 gi|291380925|gb|EFE88443.1| putative cytoplasmic axial filament protein [Bifidobacterium breve
           DSM 20213]
          Length = 477

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 109/355 (30%), Positives = 194/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 67  GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 126

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA    ++  I +D E L+R W+
Sbjct: 127 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWE 183

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  D  ++IV G+K Y   ++++  + P
Sbjct: 184 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYGRIEEYLDTMAP 243

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 244 DLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 303

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N   V ++L E
Sbjct: 304 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 363

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 364 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTV 418



 Score = 98.9 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 10 TQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 69

Query: 75 HPD 77
          + D
Sbjct: 70 NWD 72


>gi|153847015|ref|ZP_01993907.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
 gi|149744847|gb|EDM56227.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
          Length = 211

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 102/208 (49%), Positives = 141/208 (67%)

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
            + Q++S  Q EV LPS G ++I+ TEAL SID+NS R+T+   IE+TAL TNLEAA+EI
Sbjct: 4   AQSQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEI 63

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQLRLRDL GL+V+DFIDM   ++ R VE +L+E+++ DRARVQ+G IS FGLLEMSRQ
Sbjct: 64  ARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMSRQ 123

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R+  S+ E++  +C  C G G +R   S+ALS+LR +EE  L+     ++      +  Y
Sbjct: 124 RLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEALKDNTAQVLAVVPVPIASY 183

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIEL 558
           LLN+KR ++   E    V I VV   ++
Sbjct: 184 LLNEKRRSVNHIERIQEVKITVVPNSDM 211


>gi|325677079|ref|ZP_08156748.1| rne/Rng family ribonuclease [Rhodococcus equi ATCC 33707]
 gi|325552064|gb|EGD21757.1| rne/Rng family ribonuclease [Rhodococcus equi ATCC 33707]
          Length = 1078

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 121/354 (34%), Positives = 202/354 (57%), Gaps = 12/354 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +      R+  I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 489 GEVNWEAAGLGGRERKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 547

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++ LKEI R +      GVI+RTA    ++ E+ RD   L   W 
Sbjct: 548 GTSTGISRKLPDTERKR-LKEILREIVPA-DAGVIIRTASEGVSEEELSRDVTRLQTQWA 605

Query: 274 NVRELALNSVA-----PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + E A  +       P  +YEE +L+ + +RDL+ +D S++++ GEK +   + ++K +
Sbjct: 606 TIEEQAAKAKDGKSGSPQALYEEPDLLVKVVRDLFNEDFSKLVIEGEKAWNTVETYIKTV 665

Query: 329 MPSYARIVRQYED---PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
            P     V +++       +F    I+ QL      +V LPS G ++I++TEA+  +DVN
Sbjct: 666 APDLLPRVERHDPAPGTPDVFETHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVN 725

Query: 386 SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           +G+ T     +E+T  + NLEAAEEI RQ+RLRD+ G+IV+DFIDM  + N   V ++L 
Sbjct: 726 TGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVIDFIDMVLESNRDLVLRRLT 785

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           ESL +DR R QV  +++ GL++++R+++ + ++E+ +  C +C G G I     
Sbjct: 786 ESLGRDRTRHQVSEVTSLGLVQVTRKKLGTGLVEAFSTTCEHCHGRGIIVHTEP 839



 Score = 96.6 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E          + GN+YL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 432 TQVAVLEDGVLVEHFVTGSSSTSMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 491

Query: 75  HPD 77
           + +
Sbjct: 492 NWE 494


>gi|108800517|ref|YP_640714.1| ribonuclease [Mycobacterium sp. MCS]
 gi|119869656|ref|YP_939608.1| ribonuclease [Mycobacterium sp. KMS]
 gi|108770936|gb|ABG09658.1| ribonuclease, Rne/Rng family [Mycobacterium sp. MCS]
 gi|119695745|gb|ABL92818.1| ribonuclease, Rne/Rng family [Mycobacterium sp. KMS]
          Length = 991

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 130/431 (30%), Positives = 218/431 (50%), Gaps = 18/431 (4%)

Query: 83  FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
             D+         A+    AV +D    +  + +  S   V  I     +    S+ +A 
Sbjct: 356 VRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAF 415

Query: 143 NDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
            D+      V   G    +      +   I++ +K    ++VQ+ K+  G+KGA +TT +
Sbjct: 416 VDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQV 475

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGRY V +P  S    ISRK+ +   ++   +      VPA  GVI+RTA     + +
Sbjct: 476 SLAGRYLVYVPGASSTG-ISRKLPDTERQR--LKEILREVVPADAGVIIRTASEGVKEDD 532

Query: 261 IKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           I+ D   L   W  +   A       + A   +YEE +++ + IRDL+ +D S +IVSG+
Sbjct: 533 IRSDVNRLQERWTQIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGD 592

Query: 316 KGYREAKDFMKLLMPSYARIVRQYED-------PHPIFFRSGIEVQLDSLHQTEVTLPSR 368
           + +     +++ + P     + +YE           +F    I+ QL      +V LPS 
Sbjct: 593 EAWNTINSYVESVAPDLMPRLTKYEPAGNPNGEGPDVFAVHRIDEQLAKAMDRKVWLPSG 652

Query: 369 GYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
           G ++I++TEA+  +DVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G+IV+DF
Sbjct: 653 GTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDF 712

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM  + N   V ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C +C
Sbjct: 713 IDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHC 772

Query: 488 KGAGYIRSQSS 498
            G G +     
Sbjct: 773 AGRGIVLHGDP 783



 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 372 TQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 431

Query: 75  HPD 77
           + +
Sbjct: 432 NWE 434


>gi|256832877|ref|YP_003161604.1| ribonuclease, Rne/Rng family [Jonesia denitrificans DSM 20603]
 gi|256686408|gb|ACV09301.1| ribonuclease, Rne/Rng family [Jonesia denitrificans DSM 20603]
          Length = 1018

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/350 (34%), Positives = 197/350 (56%), Gaps = 4/350 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    DV     +   I+E +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY V +P  
Sbjct: 516 GEVNWDVHGIEGQPRRIEEALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVYVPGG 575

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +    +  +       V  G GVI+RTA    ++ E++ D E L + W 
Sbjct: 576 GMTG-ISRKLPDTERARLKR--ILKELVDEGSGVIVRTAAEGASETELRADVERLKKQWA 632

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + +   N+ AP L+  E +L  R +RD++  D +++ V G++ + E  +++  L P  A
Sbjct: 633 AIEKKRKNANAPALLQGEPDLAIRVVRDIFNDDFTQLSVQGDQAWGEISEYVGDLAPDLA 692

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             + ++     IF  + I+ QL      +V LPS G ++I++TEA+  IDVN+G+ T   
Sbjct: 693 NKMSRWTSEDDIFAAARIDEQLAKGLDRKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGTG 752

Query: 394 CI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +DR 
Sbjct: 753 GTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRT 812

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           + QV  +++ GL++M+R+R+   ++E+ +  C +C G GY      V   
Sbjct: 813 KHQVAEVTSLGLVQMTRKRVGQGLIEAFSTACDHCSGRGYTIHTDPVERH 862



 Score = 97.4 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     + +  I GN+YL +V  V PS++AAFVD G  R+  L   E+
Sbjct: 459 TQIAVLEDGILVEHYVSQQEQASIAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV 518

Query: 75  HPDYYQI---PFSDRQALL 90
           + D + I   P    +AL 
Sbjct: 519 NWDVHGIEGQPRRIEEALK 537


>gi|116072123|ref|ZP_01469391.1| Ribonuclease E and G [Synechococcus sp. BL107]
 gi|116065746|gb|EAU71504.1| Ribonuclease E and G [Synechococcus sp. BL107]
          Length = 651

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/324 (33%), Positives = 173/324 (53%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P+   G  ISR+I+   +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GLGVNISRRISAEAER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G G+++RT     ++  +  D E L+R W+ +++ A  SV P L+ 
Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEAEGISEELLIDDLEALLRQWEAIQQAAETSVPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD    D++ ++V           F+     +                  
Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVDDPAAVSRVGSFLGSEHGNVVVESHDESTELL--EHY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            I   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN+EAA E
Sbjct: 258 KINAAIRDALRPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNVEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDM+ +++   + +    + + D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTATRDDSARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   + C  C G G++
Sbjct: 378 KRQGQNIYELFARACPSCGGLGHV 401



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  VL D RV+EL       +   G++YL  V  V P + AAFV
Sbjct: 1  MSQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVTDLGP 72


>gi|126436133|ref|YP_001071824.1| ribonuclease [Mycobacterium sp. JLS]
 gi|126235933|gb|ABN99333.1| ribonuclease, Rne/Rng family [Mycobacterium sp. JLS]
          Length = 987

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/431 (30%), Positives = 218/431 (50%), Gaps = 18/431 (4%)

Query: 83  FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
             D+         A+    AV +D    +  + +  S   V  I     +    S+ +A 
Sbjct: 356 VRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAF 415

Query: 143 NDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
            D+      V   G    +      +   I++ +K    ++VQ+ K+  G+KGA +TT +
Sbjct: 416 VDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQV 475

Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
           SLAGRY V +P  S    ISRK+ +   ++   +      VPA  GVI+RTA     + +
Sbjct: 476 SLAGRYLVYVPGASSTG-ISRKLPDTERQR--LKEILREVVPADAGVIIRTASEGVKEDD 532

Query: 261 IKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           I+ D   L   W  +   A       + A   +YEE +++ + IRDL+ +D S +IVSG+
Sbjct: 533 IRSDVNRLQERWTQIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGD 592

Query: 316 KGYREAKDFMKLLMPSYARIVRQYED-------PHPIFFRSGIEVQLDSLHQTEVTLPSR 368
           + +     +++ + P     + +YE           +F    I+ QL      +V LPS 
Sbjct: 593 EAWNTINSYVESVAPDLMPRLTKYEPAGNPNGEGPDVFAVHRIDEQLAKAMDRKVWLPSG 652

Query: 369 GYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
           G ++I++TEA+  +DVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G+IV+DF
Sbjct: 653 GTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDF 712

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           IDM  + N   V ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C +C
Sbjct: 713 IDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHC 772

Query: 488 KGAGYIRSQSS 498
            G G +     
Sbjct: 773 AGRGIVLHGDP 783



 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 372 TQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 431

Query: 75  HPD 77
           + +
Sbjct: 432 NWE 434


>gi|113474351|ref|YP_720412.1| ribonuclease [Trichodesmium erythraeum IMS101]
 gi|110165399|gb|ABG49939.1| ribonuclease, Rne/Rng family [Trichodesmium erythraeum IMS101]
          Length = 682

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/360 (33%), Positives = 194/360 (53%), Gaps = 4/360 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++L GRY VLMP   +G  +SR+I++  +R
Sbjct: 82  ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRISSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT      +  I  D E L + W+ ++  A ++ AP L+ 
Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGMEEEAILEDLEVLQQQWEIIQIEANSNRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS--YARIVRQYEDPHPIFF 347
            + + I+R +RD+Y  D++ I+V   +G +  K  +           ++  + D  PI  
Sbjct: 200 RDNDFIQRVLRDMYSTDVNRIVVDYSEGVKRVKQHLLNWSGGKPLQVLIDHHGDRIPILE 259

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
              +   +    +  V LPS GYVII  TEAL  IDVNSG  TR     +T L TN EAA
Sbjct: 260 YFRVNAAIREALRPRVDLPSGGYVIIQPTEALTVIDVNSGSFTRSATARETVLWTNCEAA 319

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
            EIARQLRLR++AG+I+VDFIDM+ +++   V +   + L+ D+AR Q+  +S  GL+E+
Sbjct: 320 TEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNQVLRADKARPQIAQLSELGLVEL 379

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +R+R   ++ E   + C  C G G++      +   +  V   ++        +     V
Sbjct: 380 TRKRQGQNIYELFGRNCPSCNGLGHLVHLPGESEVSIGDVNLSVVNRNVDAEELTKPVAV 439



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  V  +++++EL            +IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHRIAAVFSEDQIQELVV--AKGSHQVSDIYLGTVENVIPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVSDLGP 72


>gi|186684021|ref|YP_001867217.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186466473|gb|ACC82274.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
          Length = 719

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 145/574 (25%), Positives = 242/574 (42%), Gaps = 40/574 (6%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +LVQ++KE  G KG  +T  ++L GRY VLMP   +G  +SR+I +  +R
Sbjct: 82  ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E L + W+ +++ A ++ AP L+ 
Sbjct: 141 NRLRA-LAILVKPAGMGLLVRTEAEGKPEEAIMEDLELLQKQWEAIQQEAHSTRAPALLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346
            + + I+R +RD+Y  D++ I+V    G +  K +++            +  + D  PI 
Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSGGQTPQGLLIDHHRDRSPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRISAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+IVVDFIDME +++   V +   + LK D+AR Q+  ++  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKGLKADKARPQIAQLTELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R+R   ++ E   + C  C G G+         + L    E   +    ++       
Sbjct: 380 LTRKRQGQNIYELFGETCPTCGGLGHTVRLPGELENRLPIPAETPERERFVSLPHREPRQ 439

Query: 527 VVLYLLNQKRATIVEYEARFG----VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
               +   +       EA  G     ++N++                       T  +  
Sbjct: 440 PSARVPEPRETYDGFGEAFDGDSESTNLNLINHPSYQ---------ELNDNKRRTRTRRS 490

Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR---RRRRRRR 639
                    K+   V  +           L+   +  V+ E       +     R  R  
Sbjct: 491 RIGINGLNGKDESRVIANPLAFANEPDLDLDIEPELGVTPEIPSPTLGKPGWNERVERTV 550

Query: 640 PATDHHDAGVVSDVSSIQNVID-------------------DSFDMYMEPSDITNHNLLE 680
                     V  V     +                        +  ++ +     N+++
Sbjct: 551 ERAKVIKPEPVKPVVEPPEIRTVEMSLQEQDMFALMGISPLVKLEQEVKNTKSVIINVIQ 610

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
            G    T    +S  P++   +    ++  PI K
Sbjct: 611 PGQVRTTPTESISESPIAQKVIPEVVATKSPIPK 644



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ ++  V  +++++EL   + H     G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDPERNGFIHVTDLGP 72


>gi|24460044|dbj|BAC22655.1| C-terminal reagion of putative cytoplasmic axial filament protein
           [Comamonas sp. NCIMB 9872]
          Length = 234

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%)

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
           R  +   PIF    I+ ++       V L S GY+I++QTEAL +IDVN+G        +
Sbjct: 3   RCNKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEALTTIDVNTGGYVGARNFD 62

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           DT  +TNLEAA+ IARQLRLR+L G+++VDFIDM  +++   V  + +  L +DR +   
Sbjct: 63  DTIFKTNLEAAQAIARQLRLRNLGGIVIVDFIDMVREEHQGEVLSEFRRQLARDRVKTMA 122

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
           G  S  GL+EM+R+R R S+     + C  C G G +++  S+   +LR +     Q+  
Sbjct: 123 GGFSQLGLVEMTRKRTRESLAHMLCEPCAACSGKGNVKTARSICYEVLREILREARQFNP 182

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           H   V     VV   L+++   +       G  I++     +A + + I
Sbjct: 183 HEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMAQEQYDI 231


>gi|294791357|ref|ZP_06756514.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304]
 gi|294457828|gb|EFG26182.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304]
          Length = 941

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/424 (28%), Positives = 215/424 (50%), Gaps = 13/424 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
             L+      +    +V +D    +  I +   +  V  I     +    S+ +A  D+ 
Sbjct: 431 DRLMVVRERGRHSQVSVIEDNVLVEHYISDIEEVSSVGNIYQGRVQNVLPSMEAAFVDIG 490

Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
                V   G    D  +   +   ++   +    +LVQ+ K+  G+KGA +T  +++AG
Sbjct: 491 QYRNGVLYAGEVNWDTTRLEGQPRLVEHAFRPGDNVLVQVTKDPIGHKGARLTAQITVAG 550

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           RY VL+P         +    P   +   +       P  MGVI+RTA    ++  I+ D
Sbjct: 551 RYLVLVPAGGITGVSRKL---PERERTRLKNIVSKIAPDNMGVIIRTAADGASEEAIQHD 607

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E+L++ W+NV +      +S  PHL+  E +++ R IRD++  D  +++V G+  Y   
Sbjct: 608 LEHLVKKWENVEKKLKEYQSSKRPHLLQGEPDVVIRVIRDIFNDDFKKLVVEGDSVYNRI 667

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           K++++   P     + +++         F +  I+ QL    + +V LPS G +I+++TE
Sbjct: 668 KEYLEEAAPDMLDRLEKWDPEEHEGKDVFDKWSIDSQLRKGMERKVYLPSGGSLIVDRTE 727

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E T  + NLEAAEEI RQLRLRD+ G+I++DF+DM   +N 
Sbjct: 728 AMTTIDVNTGRFIGKGQSLEATVTKCNLEAAEEIVRQLRLRDIGGMIMIDFVDMVMPQNR 787

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  C G G+I   
Sbjct: 788 DLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCAGRGFILHT 847

Query: 497 SSVA 500
               
Sbjct: 848 EPTV 851



 Score = 87.3 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           +V V+ DN + E       +    GNIY  +V  V PS++AAFVD G  R+G L   E++
Sbjct: 444 QVSVIEDNVLVEHYISDIEEVSSVGNIYQGRVQNVLPSMEAAFVDIGQYRNGVLYAGEVN 503

Query: 76  PD 77
            D
Sbjct: 504 WD 505


>gi|326773628|ref|ZP_08232911.1| ribonuclease [Actinomyces viscosus C505]
 gi|326636858|gb|EGE37761.1| ribonuclease [Actinomyces viscosus C505]
          Length = 1090

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 135/582 (23%), Positives = 235/582 (40%), Gaps = 22/582 (3%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      R   I++ + +   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 500  GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 559

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +    ISRK+ +    +  K       VP   GVI+RTA    T+ ++  D E L+  W+
Sbjct: 560  TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGATQEQLTADVERLVAQWE 616

Query: 274  NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
             + +        +  AP L+  E  L  R IRD++ +D  ++IVSG+  +     ++  +
Sbjct: 617  AIDKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLIVSGDNTWSTVSQYIDEV 676

Query: 329  MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             P  +  +  +  P  +F    ++ QL      +V LPS G ++I++TEA+  IDVN+GR
Sbjct: 677  SPDLSERLEHWVGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 736

Query: 389  ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
             T     +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L
Sbjct: 737  FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 796

Query: 448  KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
             +DR R QV  +++ GL++M+R+R+   ++E+ +  C +CKG G+I     V    +   
Sbjct: 797  GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQQVDMS 856

Query: 508  EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY------------EARFGVSINVVIG 555
                          +           + +    E             +A  G  +     
Sbjct: 857  ASASRGGGRSRGRKNREEQAAGGGKKETKQDSQETKGSKSPKGSGRGKASAGRDVAASPE 916

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLED 614
                D+     +G+  Q             Q        +  V   EA +      + + 
Sbjct: 917  PGADDEARAAVRGALAQIAAAAEQAHKDSQQEGQESHEDQGAVEAPEAGVSDTADAAAQT 976

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
             ++   ++           +  + R                  +  D             
Sbjct: 977  AENGQPADGQDASDVPVEDKPVKSRSRKAADKKPAKKSSEKKGDKADKKSGRKTGKKADK 1036

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                              S P    P   +   ++      +
Sbjct: 1037 KAAATSEDPAEPQPGEAPSEPAEDKPARRTRRRATAKSAAPS 1078



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ VL D  + E       +  + GN+Y+ +V  V PS++AAFVD G  R+  L   E++
Sbjct: 444 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 503

Query: 76  PD 77
            D
Sbjct: 504 WD 505


>gi|260906318|ref|ZP_05914640.1| putative ribonuclease [Brevibacterium linens BL2]
          Length = 1076

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/566 (22%), Positives = 229/566 (40%), Gaps = 27/566 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      +   I+  +     +LVQ+ K+  G+KGA +T+ +SL GR+ V +P  
Sbjct: 505  GEVNWDALGMDGKARRIEVALSPGDAVLVQVTKDPIGHKGARLTSQISLPGRFLVYVPGN 564

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            S    ISRK+ +    +  K       V    GVI+RTA    +  E+  D E L + W+
Sbjct: 565  SMTG-ISRKLPDVERNRLKK--LLKELVGDSNGVIVRTAAEGASDKELSTDVERLAKRWE 621

Query: 274  NVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
             + + + ++    P L+Y E ++I R IRD++ +D S +++ G+  +    ++++ + P 
Sbjct: 622  TIEKKSKSTKVLAPQLLYSEPDMIVRIIRDVFNEDFSSLVIDGDGAWNTIHEYVEAVAPD 681

Query: 332  YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
                V +Y +   IF    +E Q+    Q  V LPS G ++I++TEA+  IDVN+G+ T 
Sbjct: 682  LLDRVHRYSEDEDIFDHYRVEEQVQKALQRTVNLPSGGSLVIDRTEAMTVIDVNTGKFTG 741

Query: 391  REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
                +E+T  + NLEAAEE+ RQ+RLRD+ G+IVVDFIDM  + N   V ++L E L +D
Sbjct: 742  SGGNLEETVTRNNLEAAEEVIRQVRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRD 801

Query: 451  RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS-------- 502
            R + QV  +++ GL++M+R+RI + + ES         G G +   S    S        
Sbjct: 802  RTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGADLSGRGLLLPGSEEDGSKAHHGNRS 861

Query: 503  ------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
                    R   +      + +    +         +  R+ +                 
Sbjct: 862  SNNDGGNSRRDRKRRGDNKSSSKSNDSDGQSDTVANDASRSAVAAIAKATLKKDEAESKE 921

Query: 557  ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
              + +   +   +   A  ++      +  + S         +  +     +++S +   
Sbjct: 922  PGSSQDASVSDNASSSANTDSSKDSQGNEPSDSAGNGGSGRSRTRSNRRRSQAKSADSSD 981

Query: 617  DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN-------VIDDSFDMYME 669
                       + +     +  +                              +     E
Sbjct: 982  SAQDQSAQDTTVDETPAPEQPAQEQPAQAKPARAKKPEVPAAELPLMIGADSATKVAKAE 1041

Query: 670  PSDITNHNLLENGAHGFTENYDVSIP 695
            P            +   +E    S+P
Sbjct: 1042 PVKAAPRRKPAAKSEAKSETAQPSLP 1067



 Score = 91.6 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDF-ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ML+  S  E+T++VV+ D    E    E+  +  + GN+YL KV  V PS++AAF+D G 
Sbjct: 438 MLVRES-GEQTQLVVVEDGITVEHYLKENRQQSSLIGNVYLGKVQNVLPSMEAAFIDIGK 496

Query: 64  NRHGFLPFLEIHPD 77
            R+  L   E++ D
Sbjct: 497 GRNAVLYAGEVNWD 510


>gi|229817136|ref|ZP_04447418.1| hypothetical protein BIFANG_02394 [Bifidobacterium angulatum DSM
           20098]
 gi|229784925|gb|EEP21039.1| hypothetical protein BIFANG_02394 [Bifidobacterium angulatum DSM
           20098]
          Length = 479

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 194/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 67  GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 126

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA    ++  I +D E L+R W+
Sbjct: 127 GMTGVSRKL---SERERSRLKNIVSKVAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWE 183

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  D +++IV G+K Y   ++++  + P
Sbjct: 184 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFTKLIVEGDKVYERIEEYLDTMAP 243

Query: 331 SYA----RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                  +      +   +F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 244 DLKTKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 303

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N   V ++L E
Sbjct: 304 GRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 363

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 364 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDKPTV 418



 Score = 98.5 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 10 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 69

Query: 75 HPD 77
          + D
Sbjct: 70 NWD 72


>gi|149183736|ref|ZP_01862144.1| cytosolic axial filament protein [Bacillus sp. SG-1]
 gi|148848557|gb|EDL62799.1| cytosolic axial filament protein [Bacillus sp. SG-1]
          Length = 494

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 101/407 (24%), Positives = 199/407 (48%), Gaps = 4/407 (0%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
           +K ++   I  ++   Q L+VQ+ K+  G KG  VT  + + G   V +P+  +   +S+
Sbjct: 89  EKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGIIEMKGTSLVYLPH-GRYTAVSK 147

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           K ++   +K  +     ++     G++ RTA   + + EI+ ++  L + +  +   +L+
Sbjct: 148 KASSEEQKKKWRRFGSRIKEE-EEGIVFRTAALGKAEKEIQNEYLGLKKQYQELYSSSLS 206

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
             AP L++ +  + +  + ++     +EII        E ++F+     S    +  ++ 
Sbjct: 207 KKAPFLLHRQDVMKEDILEEIKKVKQAEIITDDYSWKNEFQEFLHNNKASLGGEITHFQS 266

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    +E Q++   +  V L +   ++I  TEAL  IDVN+G+ T +  +  T L+
Sbjct: 267 HENIFVHYRVETQIEKAMKKVVWLDNGATIVIEPTEALTVIDVNTGKFTGKSDLSQTVLK 326

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TN  AA+EIARQL++R+L+G+I++DFI+M+ +++   V   LKE LK+D  R  +   + 
Sbjct: 327 TNELAAKEIARQLKIRNLSGIILIDFIEMKSEQHQTEVVNALKEGLKEDGKRTTIVGFTE 386

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            G+L+++R++ +  +LE  +  C  C G G + S  S+A  + R + E         +I+
Sbjct: 387 LGILQLTRKKTKPPLLEYISCRCPICSGYGMVESAESMAYKLERELYELYPADEDK-VII 445

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
               DV      +    + E E      I     +  +   + I++ 
Sbjct: 446 EATEDVQKVFKGESSQYLKEMEKSINKKIEFQP-VSQSHPFYRIKRL 491



 Score = 83.9 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          N+++++A    E R   LRD  +E        K+ I GNIY+ +V +VE  L AAF++ G
Sbjct: 11 NRIIVNA-LGREKRWARLRDGIMESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINIG 69

Query: 63 GNRHGFLPFLEI 74
            ++GFL   ++
Sbjct: 70 EGKNGFLHIEDL 81


>gi|227875309|ref|ZP_03993451.1| ribonuclease G [Mobiluncus mulieris ATCC 35243]
 gi|306818571|ref|ZP_07452294.1| ribonuclease G [Mobiluncus mulieris ATCC 35239]
 gi|227844214|gb|EEJ54381.1| ribonuclease G [Mobiluncus mulieris ATCC 35243]
 gi|304648744|gb|EFM46046.1| ribonuclease G [Mobiluncus mulieris ATCC 35239]
          Length = 817

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/345 (34%), Positives = 202/345 (58%), Gaps = 5/345 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+E +    ++LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 299 GEVNWDAAGLNSKTGRIEEALSPGDMVLVQVTKDPIGHKGARLTSQITLAGRHLVLVPSG 358

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+     ++   +      +PAG GVI+RTA    T+ +++ D E L+++W+
Sbjct: 359 AMTG-ISRKLPEEERKR--LKTVLKTMIPAGFGVIVRTAAEGATEEQLRVDVERLVKIWE 415

Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           ++ +       +P L++ E  L  R +RD++ +DIS + + GE+ +     ++K L P  
Sbjct: 416 DIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHTISKYVKELSPEL 475

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
              +  +ED   +F    I+ QL    + +V LPS GY+II++TEA+  IDVN+GR    
Sbjct: 476 GERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGA 535

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L +DR
Sbjct: 536 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDR 595

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
            R QV  +++ GL++M+R+R+   ++E+ +  C  C G G+I   
Sbjct: 596 TRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 640



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           +V +L D  + E       +  + GN+YL KV  V  S++AAFVD G  R+  L   E++
Sbjct: 243 QVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 302

Query: 76  PD 77
            D
Sbjct: 303 WD 304


>gi|54023319|ref|YP_117561.1| hypothetical protein nfa13520 [Nocardia farcinica IFM 10152]
 gi|54014827|dbj|BAD56197.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 1145

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/347 (36%), Positives = 208/347 (59%), Gaps = 7/347 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +      ++  I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 468 GEVNWEAAGLGGKERKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 526

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++ LKEI R +  P   GVI+RTA    ++ E+ RD E L   W 
Sbjct: 527 GTSTGISRKLPDTERKR-LKEILREIVPP-DAGVIIRTASEGVSEAELARDVERLQSTWR 584

Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           +++E A     AP  +YEE +L+ + IRDL+ +D S++++ GE+ +   +++++ + P  
Sbjct: 585 SIQEQADKDGGAPKTLYEEPDLLVKVIRDLFNEDFSQLVIEGERAWTTVQNYIRTVAPDL 644

Query: 333 -ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
            AR+ R   +   +F    I+ QL      +V LPS G ++I++TEA+  IDVN+G+ T 
Sbjct: 645 LARVSRHENNGVDVFETYRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG 704

Query: 392 --EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E+L +
Sbjct: 705 SGGSNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGR 764

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           DR R QV  +++ GL++M+R+++ + ++E+ +  C +C G G I   
Sbjct: 765 DRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHN 811



 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query: 11  HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
           H   T+V VL DN + E       +  + GN+YL KV  V PS++AAFVD G  R+G L 
Sbjct: 407 HPNITQVAVLEDNILVEHFVTDTGQPSMVGNVYLGKVQNVLPSMEAAFVDIGRGRNGVLY 466

Query: 71  FLEIHPD 77
             E++ +
Sbjct: 467 AGEVNWE 473


>gi|260578302|ref|ZP_05846218.1| ribonuclease E [Corynebacterium jeikeium ATCC 43734]
 gi|258603604|gb|EEW16865.1| ribonuclease E [Corynebacterium jeikeium ATCC 43734]
          Length = 1027

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 142/580 (24%), Positives = 240/580 (41%), Gaps = 36/580 (6%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G      P    +   I + ++    +LVQ++K+  G+KGA +T  +S AGRY V  P  
Sbjct: 421 GEMDWRSPHLHSKSRKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYLVYFP-A 479

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+     ++ LK+I   +    G G I+RTA  + T+ +I  D + L + W 
Sbjct: 480 GTTAGISRKLPAGERKR-LKDILGEVITGDG-GAIIRTAAENATEEQITEDVQRLEKRWQ 537

Query: 274 NVR-----ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326
            ++     E       P  +YEE N++ + +RD++  D SE+I+ G+K ++  +D++   
Sbjct: 538 EIQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDYLGRT 597

Query: 327 --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
              LM    +  R   D    F    ++ QL+     +V LPS GY+II+ TEA+  IDV
Sbjct: 598 SPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMTVIDV 657

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G        +E T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  ++N   V ++L
Sbjct: 658 NTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLVLRRL 717

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E L +DR R ++G +++ GL++++R+R+ + +LE+ +  C  C G G+I     V    
Sbjct: 718 SEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFIMHPDPVEQKD 777

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
                ++  +           +     L  + +                        +  
Sbjct: 778 PEPRRDHGHRKERQQAKNQGKNQSKGQLKERGQG---------------KAPERSQREDK 822

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKN-------IECVWQDEALLPIPKSESLEDIQ 616
            +E+    +    T              +             + +   P PK E  +   
Sbjct: 823 QVERTPQTEQTEQTQRPQSPQGTRRRVRRVVRRGTPLAAQGSERQEEQPEPKQEQSQKRG 882

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI-QNVIDDSFDMYMEPSDITN 675
            N  +      I       R+R    D  +     +     QN +  +          + 
Sbjct: 883 GNAKARNRASDIEGIVASARKRSAQEDPDEPSAADNAERPEQNKVAANRVRRRRRVVRSA 942

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           H    +       +   S    S+ E         P  K+
Sbjct: 943 HTNARSARSSSGRDAHSSAANQSSYEEAKRKFEESPRRKR 982



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 14  ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
            T+V V+ D ++ E        + + GN+YL +V  V  S++AAFVD G  R+  L   E
Sbjct: 363 MTQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGE 422

Query: 74  I 74
           +
Sbjct: 423 M 423


>gi|289668275|ref|ZP_06489350.1| ribonuclease G [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 427

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/319 (35%), Positives = 185/319 (57%), Gaps = 2/319 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           ++ Q ++VQ+VK+  G KGA +TT +S+  RY VL+P  SK   +S +I +  +R  LK 
Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164

Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           I   +    G  G I+RT    +    +  D  YL R+W+ V      +    ++YE+ +
Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L  RA+RDL  +D+ ++ V   + + + + F+   MP  A  +  Y    PIF   G+E 
Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLEAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           ++      +V L S GY++I+QTEA+ +IDVN+G    +  +E+T  +TNLEAA+ +ARQ
Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+  V   S  GL+EM+R+R  
Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404

Query: 474 SSVLESTTKVCTYCKGAGY 492
            S+    ++ C  C G G 
Sbjct: 405 ESLERQLSETCGQCGGRGT 423



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV V+ +  ++EL  E   ++ + GNIY  KV RV P +QAAFV+
Sbjct: 1  MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G  R  FL   ++
Sbjct: 60 VGLERAAFLHANDV 73


>gi|229543690|ref|ZP_04432750.1| ribonuclease, Rne/Rng family [Bacillus coagulans 36D1]
 gi|229328110|gb|EEN93785.1| ribonuclease, Rne/Rng family [Bacillus coagulans 36D1]
          Length = 492

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/490 (23%), Positives = 205/490 (41%), Gaps = 13/490 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  ++  +   +    AV ++     + I       +V  I        +  I +A  D
Sbjct: 2   DRSIII--NVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFID 59

Query: 145 VVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
           +          S        K     I   +   Q ++VQ+ K+E G KG  +T  + L+
Sbjct: 60  IGGIRHGYLHISRLPAFANSKNSNPTISAYLSPGQTVMVQVKKDETGQKGPLLTGIIELS 119

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
           G   V +P   K   +S+K  +    +    + + LE     G+I+RTA         + 
Sbjct: 120 GEQIVYLP-EGKYTAVSKKADDADRNRWRNRVRKALEPQ--EGIIVRTAAIHAGGDGWRD 176

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           + + L   +  + E A    AP +++E+  +     R+L     S  ++  +        
Sbjct: 177 ELKCLRLRYKCLLEKAAQLKAPAVLHEKSTVEAEIFRELVRL-KSGTVIVDDAEALARLK 235

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
            +    P        Y     IF R  I+  L+   +  V L +  Y++I++TEAL  ID
Sbjct: 236 ALLAGRPELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEALTIID 295

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           VN+G+ T      +T L+TNL AA+EI RQL+LRD  G+I+VDFIDM+  +    V   L
Sbjct: 296 VNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQVRAVL 355

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           ++ L+ D  + ++   +  G+L+M+R++ R S+ E+   VC  C G+G I S  ++A  +
Sbjct: 356 EKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPETLAFRL 415

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN--VVIGIELADK 561
            R + E         +++    DV      +    +   E   G+ +   +         
Sbjct: 416 ERELWEAPYA-DYEAVLIECTQDVKDCFCGETDVHLKRLENLLGMKLIFHITRDPH---P 471

Query: 562 LFYIEKGSPV 571
            + I +    
Sbjct: 472 FYAIRQFGTA 481



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   ++I+     E R  V+ + +V  +           GNIYL KV  V+P + AAF+D
Sbjct: 1  MDRSIIINVKT-REKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFID 59

Query: 61 YGGNRHGFLPFL 72
           GG RHG+L   
Sbjct: 60 IGGIRHGYLHIS 71


>gi|284928630|ref|YP_003421152.1| ribonuclease, Rne/Rng family [cyanobacterium UCYN-A]
 gi|284809089|gb|ADB94794.1| ribonuclease, Rne/Rng family [cyanobacterium UCYN-A]
          Length = 654

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 218/466 (46%), Gaps = 16/466 (3%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I +++  +Q +LVQ++KE  GNKG  +T  +SL GR+ VLMPN  KG  +SR+I N  +R
Sbjct: 82  IIDLLTPQQKVLVQVMKEPTGNKGPRLTGNVSLPGRFLVLMPN-GKGVNLSRRIGNDNER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT    + +  I  D E+L + W+ V+  A  + AP L+ 
Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEDQAEEAIMEDLEFLQKQWETVQIQATATRAPSLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346
            + + I+R +RD+Y  D++ I+V    G +  K  +              +         
Sbjct: 200 RDDDFIQRVLRDIYSADVNRIVVDSTSGVKRVKHHLMNWSGGRPPEGVLIDHHQESMPIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  +DVNSG  TR     +T L TN EA
Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVVDVNSGSFTRSATSRETVLWTNSEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++ G+I+VDFIDM+ +++   + +   ++LK+D+AR Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKEDKARPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           ++R+R   +V E   + C+ C G G++      S  + +  +       ++  +    + 
Sbjct: 380 LTRKRQGKNVYELFGQPCSNCGGLGHLAFLPGESQLVPLELASSSIPQAFSNKSSESSSE 439

Query: 525 SDVVLYLLNQKRATIVEY-----EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                       + +        + +   + N             I      +A     +
Sbjct: 440 QTWESSFEEDNSSELELLFHPSYQEQNNTATNSRRRRRRQSPNLVI----KEEAPTKIAN 495

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            + +       ++ +E   +      + +   +E +   + S E  
Sbjct: 496 NLSNKEIEDDNEQIVESRRERLPRHLVREESPIEKVSVEMTSLEQD 541



 Score = 72.7 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I   H       V  +++++EL        Q   +I+L  V  V P + AAFV+
Sbjct: 1  MPKQIIITEQHHI---AAVFWEDQIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAFVN 55

Query: 61 YG-GNRHGFLPFLEIHP 76
           G   R+GF+   ++ P
Sbjct: 56 IGDAERNGFIHVTDLGP 72


>gi|68535628|ref|YP_250333.1| ribonuclease E [Corynebacterium jeikeium K411]
 gi|68263227|emb|CAI36715.1| ribonuclease E [Corynebacterium jeikeium K411]
          Length = 1013

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 143/580 (24%), Positives = 241/580 (41%), Gaps = 36/580 (6%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G      P    +   I + ++    +LVQ++K+  G+KGA +T  +S AGRY V  P  
Sbjct: 407 GEMDWRSPHLHSKSRKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYLVYFP-A 465

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+     ++ LK+I   +    G G I+RTA  + T+ +I  D + L + W 
Sbjct: 466 GTTAGISRKLPAGERKR-LKDILGEVITGDG-GAIIRTAAENATEEQITEDVQRLEKRWQ 523

Query: 274 NVR-----ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326
            ++     E       P  +YEE N++ + +RD++  D SE+I+ G+K ++  +D++   
Sbjct: 524 EIQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDYLGRT 583

Query: 327 --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
              LM    +  R   D    F    ++ QL+     +V LPS GY+II+ TEA+  IDV
Sbjct: 584 SPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMTVIDV 643

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G        +E T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  ++N   V ++L
Sbjct: 644 NTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLVLRRL 703

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            E L +DR R ++G +++ GL++++R+R+ + +LE+ +  C  C G G+I     V    
Sbjct: 704 SEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFIMHPDPVEQKD 763

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
                ++  +           +     L  + +                        +  
Sbjct: 764 PEPRRDHGHRKERQQAKNQGKNQSKGQLKERGQG---------------KAPERSQREDK 808

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKN-------IECVWQDEALLPIPKSESLEDIQ 616
            +E+   V+    T              +             + +   P PK E  +   
Sbjct: 809 QVERTPQVEQTEQTQRPQSPQGTRRRVRRVVRRGTPLAAQGSERQEEQPEPKQEQSQKRG 868

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI-QNVIDDSFDMYMEPSDITN 675
            N  +      I       R+R    D  +     +     QN +  +          + 
Sbjct: 869 GNAKARNRASDIEGIVASARKRSAQEDPDEPSAADNAERPEQNKVAANRVRRRRRVVRSA 928

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           H    +       +   S    S+ E         P  K+
Sbjct: 929 HTNARSARSSSGRDAHSSAANRSSYEEAKRKFEESPRRKR 968



 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 14  ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
            T+V V+ D ++ E        + + GN+YL +V  V  S++AAFVD G  R+  L   E
Sbjct: 349 MTQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGE 408

Query: 74  I 74
           +
Sbjct: 409 M 409


>gi|227495878|ref|ZP_03926189.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226834555|gb|EEH66938.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 1047

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ +K+   +LVQ+ K+  G+KGA +T+ ++LAGRY VL+P  
Sbjct: 607 GEVNWDAAGMEGKPRRIEDALKSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 666

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +    ISRK+ +    ++  +      VP   GVI+RTA    ++ +++ D E L   W 
Sbjct: 667 TMTG-ISRKLPDTE--RHRLKGILKRIVPDDAGVIVRTAAEGASEEQLRADVERLATQWA 723

Query: 274 NVRELALN-----SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + + +         AP L+  E  L  R +RD++ +D  ++IV G   ++   +++  L
Sbjct: 724 AIDKKSKQILSGSGRAPVLLKGEPELAVRVVRDVFNEDFRKLIVQGPDAWKTISEYVTEL 783

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P  A  +  +  P  +F    I+ QL      +V LPS G +II++TEA+  IDVN+GR
Sbjct: 784 SPDLADRLEHWVSPEDVFSAHRIDEQLAKGFDRKVWLPSGGTLIIDRTEAMTVIDVNTGR 843

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + N+EAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L
Sbjct: 844 FTGAGGTLEETVTRNNIEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 903

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R+R+   ++E+ +  C  C G G+I   + V   
Sbjct: 904 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTPCECCGGRGFIVHDNPVENQ 958



 Score = 88.5 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           ++ +L D  + E       +  + GN+Y+ +V  V PS++AAFVD G  R+  L   E++
Sbjct: 551 QIAILEDGMLVEHYVARHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 610

Query: 76  PD 77
            D
Sbjct: 611 WD 612


>gi|256371567|ref|YP_003109391.1| ribonuclease, Rne/Rng family [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008151|gb|ACU53718.1| ribonuclease, Rne/Rng family [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 457

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 190/336 (56%), Gaps = 6/336 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I+++++ +Q+++ Q VK    +KGA +T  +SL GR++VL+P   +   IS+++ +   R
Sbjct: 125 IEQLLRPKQVIVCQAVKNPIAHKGARLTQEVSLPGRFAVLVPGQ-RSVGISKRLPDQERR 183

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           +          VP G GVILRTA    T+ E++RD   L+ +W  + ELA    AP L+Y
Sbjct: 184 R--LRGLVEDLVPEGFGVILRTAAEGATRAELERDITQLVGMWQRIDELARTEHAPALLY 241

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346
           +E     R IR+ + ++   + +     Y +   +++ + P  A  V  Y+      PIF
Sbjct: 242 QEPPAAVRVIREEFSQEFRSVAIDDRALYEDVARYVQTISPELADRVEYYDAEAEGVPIF 301

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
            R  ++ QL    +  V LPS G ++I++ EAL  IDVN+ R+     +E+T  + NLEA
Sbjct: 302 QRYHVQHQLAKALERTVWLPSGGSLVIDRAEALTVIDVNTARNVGAVSLEETIHRNNLEA 361

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
            EEIARQLRLRD+ G+IV+D +DM + +N   V +  + +L +D+ R  V  +S  GL++
Sbjct: 362 VEEIARQLRLRDIGGIIVIDVVDMVDPQNRDDVMRAFRAALARDKTRTHVYDMSPLGLIQ 421

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           M+RQRI   ++ES +  C  C G GY+  +  VA  
Sbjct: 422 MTRQRISEGLVESLSSTCPTCHGQGYVLDEDVVASR 457



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 11  HVEETRVVVLRDNRVEELDFESEH--KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           H + T V +L    + +         +  + GNIYL +V  V P ++AAF+D G  ++  
Sbjct: 44  HGDVTHVAILEGRSLIQHAVSRASDTETSVVGNIYLGRVVNVLPGMEAAFIDIGTAKNAV 103

Query: 69  LPFLEI 74
           L   ++
Sbjct: 104 LYRGDV 109


>gi|262341298|ref|YP_003284153.1| ribonuclease G [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272635|gb|ACY40543.1| ribonuclease G [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 510

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 120/574 (20%), Positives = 213/574 (37%), Gaps = 86/574 (14%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +++I+A   +E  + +L + ++ EL  +  +KK   G+IYL  V ++   L AA +D
Sbjct: 1   MNKELIINA-EEQEVEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL + ++    +QI       +L+  ++ +       +   + +      H  
Sbjct: 60  IGHSKGAFLHYNDLG---FQI-----NKILELISMNRKFFSNNFEKKENRNSIDKILHPG 111

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           + +    +                          G           +Y I      +  +
Sbjct: 112 QRILVQISKE-------------------PISNKGPKLTSKICIPGRYLILIPFSEKISI 152

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +I   +  ++                                      +     +  E
Sbjct: 153 SKKIKNAKEESR------------------------------------LLSYIRKIKPHE 176

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
               +              E+    +   +   N+ +L      P  V  E +     +R
Sbjct: 177 FGIIIRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLP---PPPVRVLSEISKTSCLLR 233

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D +  D   I  +     +E   ++ L+ P    I++ Y+   PIF + GIE Q+     
Sbjct: 234 DTFNDDFKSIYCNNNFLCQEIHSYLSLIAPEKINIIKYYKGNIPIFEKYGIEKQIQIFLG 293

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI------EDTALQTNLEAAEEIARQL 414
             V L +  Y+II  TEAL  IDVNSG +             D  L+ NL AA EIARQL
Sbjct: 294 RNVPLENGAYLIIEHTEALHVIDVNSGMNNHMKKNCTESERIDNILKINLLAATEIARQL 353

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLRD+ G+IVVDFIDM E    + + + LKE +K DRA+ ++   + FGL++ +R R+R 
Sbjct: 354 RLRDMGGIIVVDFIDMSEPIQRKQLYEHLKEKMKNDRAKHKILPPNKFGLVQFTRHRVRP 413

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSV---EEYLLQYTAHNIIVHTHSDVVLYL 531
            +  +              +S+ S    I R     E  +       I +H HS V  YL
Sbjct: 414 ELKVNINNE----------KSKDSPIHYIHRLEFVLESIIKNKNHQKIQLHIHSFVSAYL 463

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                +   ++  ++   I ++         + I
Sbjct: 464 KKGFPSIQQKWLLKYKKWIQIIPRDSFGYTEYKI 497


>gi|300788544|ref|YP_003768835.1| ribonuclease [Amycolatopsis mediterranei U32]
 gi|299798058|gb|ADJ48433.1| ribonuclease [Amycolatopsis mediterranei U32]
          Length = 980

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 239/565 (42%), Gaps = 43/565 (7%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I++ +     +LVQ+ K+  G+KGA +TT +SL GR+ V +P  
Sbjct: 426 GEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAG 485

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+     R+   +      VP   GVI+RTA     + E+ RD + L   WD
Sbjct: 486 G-ATGISRKLPENERRR--LKDILKRIVPEDAGVIIRTASEGIGEEELGRDVDRLKAQWD 542

Query: 274 NVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++E A         AP ++YEE +L+ + +RDL+ +D +++ + G + +     ++  +
Sbjct: 543 VIKEKAAAGSGKKGGAPTMLYEEPDLLVKVVRDLFTEDFTKLEIQGNRSWETINGYVSHV 602

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P     +R+Y      F    I+ Q+      +V LPS GY++I++TEA+  IDVN+G+
Sbjct: 603 APELTERLRRYTGTGDAFADHRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E+T  + NLE+AEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L
Sbjct: 663 FTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507
            +DR R QV  +++ GL++M+R++I + +LE+ +  C +CKG G + S       + R+ 
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPCEHCKGRGVLVSTE-----VQRTA 777

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
                    +      +           R +                            +
Sbjct: 778 GNATQSPGGNGNGGGNNGGNSGGGEKSSRRS----------------------------R 809

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G              +         + E      + +    + S    + +  +    G 
Sbjct: 810 GRGKSEEAAKEAAAEAAKAEVHAVPSPEQRESIASAVAAMANASKAAKEHDHGALNGNGP 869

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                 R     PAT   D   V+     +   + +       +D       E      +
Sbjct: 870 AP-EPAREIADVPATTEADETPVAAEPPAEPAQEVAGIPVTTEADEVPVPQDEEPEVEQS 928

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPI 712
              + +  PV+ P  +   +  +P 
Sbjct: 929 SAPEPAEEPVTEPVADPEVNVPEPA 953



 Score = 98.1 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           + A H + T++ VL D  + E          I GN+YL +V  V PS++AAF+D G  R+
Sbjct: 361 VVAEHGDSTQIAVLEDGVLVEHFVTQSGSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRN 420

Query: 67  GFLPFLEIHPD 77
             L   E+  D
Sbjct: 421 AVLYAGEVDWD 431


>gi|319440897|ref|ZP_07990053.1| ribonuclease E [Corynebacterium variabile DSM 44702]
          Length = 1295

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 137/570 (24%), Positives = 233/570 (40%), Gaps = 30/570 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   I+  +K    +LVQ +K+  G+KGA +T  LS AGRY V +P  
Sbjct: 555  GEVDWRNKHLHTRTRRIEAALKPGDQVLVQAIKDPLGHKGARLTNRLSFAGRYLVYVPG- 613

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             K + ISRK+     ++   +   G  VP   G I+RTA    ++  I  D   L + W 
Sbjct: 614  GKTQGISRKLPESERKR--LKDILGRVVPDNGGTIIRTAAEGVSEELIAEDVNRLHQRWL 671

Query: 274  NVRE-----LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++++      A     P  +YEE N++ + IRD++ +D +E++V GEK +   +D++  +
Sbjct: 672  DIQDAEEKARARKGSHPVTMYEEPNMLVKVIRDIFNEDFNELVVDGEKSWAVVRDYVHRI 731

Query: 329  MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P     V +Y         +F    ++ QL      +V LPS GY+II++TEA+  IDV
Sbjct: 732  APDLESRVVRYHPEQHGGRDVFEDRQLDEQLAKALSRKVWLPSGGYLIIDRTEAMTVIDV 791

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G        +E+T    NLEAAEEI RQ+RLRD+ G+IVVDFIDM   +N   + ++L
Sbjct: 792  NTGSFVGSGGNLEETVTLNNLEAAEEIVRQMRLRDMGGMIVVDFIDMVLPENRDLMLRRL 851

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
             E L +DR R +V  +++ GL++M+R+R+ + +LE+ +  C  C+G G I         +
Sbjct: 852  SEFLGRDRTRHKVSEVTSLGLVQMTRKRLGTGLLETFSTECPTCEGRGVIIHDDP----V 907

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
                EE    +   +    +           +R      E                    
Sbjct: 908  EHVEEEDGHHHERRDHGRRSEKRQARDQQETRRRHEKNRE-----------DATSDHPEK 956

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
              +K +P     +   K   + ++    +      +  +      +E   +        +
Sbjct: 957  IGQKEAPA--KESQDAKEVKEDKSEVEQQRRSRRTRRGSRAGGQVAEKAPEKAQEQSRPK 1014

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
            +   +  +   +     A +H      +     + V  +      EP    +        
Sbjct: 1015 TESTVEPKAEFKAESEAAPEHSGESQGARRGRRRVVRSNETGHQDEPRRDHSSARDARDD 1074

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                             E        DP  
Sbjct: 1075 RRSHGAGSAGDVAAIAAEAVQHAGIEDPDE 1104



 Score = 81.6 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 9   ASHVEET-RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHG 67
           + H   T +V +  D  + E    SE +  I GNIYL +V  V  S++AAFVD G  R+ 
Sbjct: 491 SDHPGMTTQVGITEDGMLVEHFVTSETQSSIIGNIYLGRVQNVLSSMEAAFVDIGTGRNA 550

Query: 68  FLPFLEI 74
            L   E+
Sbjct: 551 VLYAGEV 557



 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 3/155 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G+P +       K    +             +  A     K    ED   +  + E    
Sbjct: 55  GAPAETAKKAPAKRTRKAAPKKSAATKSTAKKAPATKTATKDVPAEDAPVDATAAEKNTD 114

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                 ++    PA                                      +  A   T
Sbjct: 115 APAETAKK---APAKRTRKTTAKKAAPKKDESQQPEATTAEPKKSRARKAPAKKTATTQT 171

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      TPE+   ++      K T    RR
Sbjct: 172 AAKKEEPTTPETPEVAEPSAEEKSTTKTTSRRPRR 206


>gi|294501399|ref|YP_003565099.1| ribonuclease, Rne/Rng family [Bacillus megaterium QM B1551]
 gi|294351336|gb|ADE71665.1| ribonuclease, Rne/Rng family [Bacillus megaterium QM B1551]
          Length = 489

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 103/433 (23%), Positives = 202/433 (46%), Gaps = 13/433 (3%)

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           +   +  S +      K Q  +   I+  + +LVQ+VKE  G KG  +T  +  +    V
Sbjct: 69  IHRNELVSYQQSENPHKDQQPMSAFIREGEKVLVQVVKEGIGTKGPKLTGIIEFSSDELV 128

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
            +P+      +S+KI  P  ++   +           G + RTA A +++  ++   + L
Sbjct: 129 YLPH-GNYVAVSKKIAEPKRQQW--KQLGERLKQGMEGFLFRTAIAEKSEAAVQHKIKEL 185

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + ++ +        AP LV +  + ++  ++    + I  I+V     Y+        L
Sbjct: 186 QKKYERLERQTQGMKAPALVSKGQDFLETRVQAALQQGIDGIVVDDFDLYQHLHTTYSNL 245

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
                  +  Y+    IF    +E Q++ L +  V L S GY++I++TEA+  +DVN+G+
Sbjct: 246 S------IEYYKGNENIFSFYDLERQIEKLLKRIVWLKSGGYIVIDETEAMTVVDVNTGK 299

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
            + +  I  T LQTN+EAA E+++Q++LR L G+I++DFI+M  K++   VE+ +K+  +
Sbjct: 300 FSGKDNIRKTMLQTNMEAAYELSKQMQLRHLGGMILIDFINMPHKEDRTEVERYMKKLCE 359

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
           +D  R  +   +  G+L+++R+++R+S+  + T  C  C+G G +    + A  I R + 
Sbjct: 360 QDEVRTNIVGFTELGILQLTRKKVRNSIGSTLTMPCEVCEGTGKMIDSKTAAFQIERVIW 419

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           E+        I + T SDV+  +  Q    +   E     +I +    +     F + + 
Sbjct: 420 EHRGAEE-EAIWIETRSDVINEMKAQ--GFLNALEKMVKKTIYLTPSDDY-TNAFVLRQL 475

Query: 569 SPVQALVNTGHKV 581
              + +       
Sbjct: 476 GSNEQIQKRVSAS 488



 Score = 93.1 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 6   LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
           +I+A+     R+ V+ D  +E++  E + + QI G+IY  KV +V P +QAAF+D G + 
Sbjct: 7   IINAATSS-KRIAVINDKALEKIYLEEQSENQIIGDIYWGKVVKVLPHMQAAFIDIGLSM 65

Query: 66  HGFLPFLEIHPDYYQI---PFSDRQALLKESNIAQTDSEAVADD 106
           +GF+   E+    YQ    P  D+Q +       +     V  +
Sbjct: 66  NGFIHRNELVS--YQQSENPHKDQQPMSAFIREGEKVLVQVVKE 107


>gi|295706747|ref|YP_003599822.1| ribonuclease, Rne/Rng family [Bacillus megaterium DSM 319]
 gi|294804406|gb|ADF41472.1| ribonuclease, Rne/Rng family [Bacillus megaterium DSM 319]
          Length = 489

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 103/433 (23%), Positives = 202/433 (46%), Gaps = 13/433 (3%)

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           +   +  S +      K Q  +   I+  + +LVQ+VKE  G KG  +T  +  +    V
Sbjct: 69  IHRNELVSYQQSENPHKDQQPMSAFIREGEKVLVQVVKEGIGTKGPKLTGIIEFSSDELV 128

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
            +P+      +S+KI  P  ++   +           G + RTA A +++  ++   + L
Sbjct: 129 YLPH-GNYVAVSKKIAEPKRQQW--KQLGERLKQGMEGFLFRTAIAEKSEAAVQHKIKEL 185

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            + ++ +        AP LV +  + ++  ++    + I  I+V     Y+  +      
Sbjct: 186 QKKYERLERQTQGMKAPTLVSKGQDFLETRVQAALQQGIDGIVVDDFDLYQHLQTTYPNS 245

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
                  +  Y+    IF    +E Q++ L +  V L S GY++I++TEA+  +DVN+G+
Sbjct: 246 S------IEYYKGNENIFSFYDVERQIEKLLKRIVWLKSGGYIVIDETEAMTIVDVNTGK 299

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
            + +  I  T LQTN+EAA E+++Q++LR L G+I++DFI+M  K++   VE+ +K+  +
Sbjct: 300 FSGKDNIRKTMLQTNMEAAYELSKQMQLRHLGGMILIDFINMPHKEDRTEVERYMKKLCE 359

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
           +D  R  V   +  G+L+++R+++R+S+  + T  C  C+G G +    + A  I R + 
Sbjct: 360 QDEVRTNVVGFTELGILQLTRKKVRNSIGSTLTMPCEVCEGTGKVIDSKTAAFQIERVIW 419

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           E+        I + T SDV+  +  Q    +   E     +I +    +     F + + 
Sbjct: 420 EHRGAEE-EAIWIETRSDVINEIKAQ--GFLNALEKMAKKTIYLTPSDDY-TNAFVLRQL 475

Query: 569 SPVQALVNTGHKV 581
              + +       
Sbjct: 476 GSNEQIQKRVSAS 488



 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 6   LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
           +I+A+     R+ V+ D  +E++  + + + QI G+IY  KV +V P +QAAF+D G + 
Sbjct: 7   IINAATSS-KRIAVINDKALEKIYLQEQSENQIIGDIYWGKVVKVLPHMQAAFIDIGLSM 65

Query: 66  HGFLPFLEIHPDYYQI---PFSDRQALLKESNIAQTDSEAVADD 106
           +GF+   E+    YQ    P  D+Q +       +     V  +
Sbjct: 66  NGFIHRNELVS--YQQSENPHKDQQPMSAFIREGEKVLVQVVKE 107


>gi|303241620|ref|ZP_07328119.1| ribonuclease, Rne/Rng family [Acetivibrio cellulolyticus CD2]
 gi|302590840|gb|EFL60589.1| ribonuclease, Rne/Rng family [Acetivibrio cellulolyticus CD2]
          Length = 403

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 203/481 (42%), Gaps = 79/481 (16%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M +++++D     E RV +L D  + E+  E    +++ GNIY  KV+ V P +QAAF+D
Sbjct: 1   MVSEIIVDVGL-NEKRVALLEDKELVEVFIERNDSERLAGNIYRGKVSSVLPGMQAAFID 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++ FL   +                         D E + +D+   ++        
Sbjct: 60  IGYEKNAFLYVGDAVSQ----------------KEFSEDEEEMYNDMKSYNIEELLRPGQ 103

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           E    +      T+                                +      +  RQ++
Sbjct: 104 EITVQVTKEPIGTKGP------------------------------RVTTHITLPGRQLV 133

Query: 181 LVQIVKEERGNKGAA-VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
           L+        ++        + L      + P       I R ++     ++ K     L
Sbjct: 134 LLPNADYIGISRRIEDEEERVKLKKIAEKVKP--KNMGLIVRTVSEGKREEDFKNDINFL 191

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                   I ++  +      I                           + + N++ RA+
Sbjct: 192 VKLWEK--IKKSEQSGPVPRCI---------------------------HRDLNIVYRAV 222

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           RD++  +I + I++  + Y +  + +++  P+    V  +     ++    I+  +    
Sbjct: 223 RDMFTWNIDKFIINDRQEYNKVLELVEMSSPALKLRVECFNKNIDLYEHFQIDSMIAKAL 282

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
             +V L   GY+II +TEAL  +DVN+G+    + +E+T L+TN++AA+EIA+QLRLRD+
Sbjct: 283 SKKVWLKCGGYLIIERTEALTVVDVNTGKYVGNNNLEETVLRTNIDAAKEIAKQLRLRDI 342

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
            G+I++DFIDM E ++ + + + L+++LKKDR +  V  ++  GL+EM+R+++R+S+   
Sbjct: 343 GGIIIIDFIDMHEPEHQKQIIETLRQALKKDRTKTTVVGMTGLGLIEMTRKKVRTSLYCI 402

Query: 480 T 480
            
Sbjct: 403 M 403


>gi|119717674|ref|YP_924639.1| ribonuclease G [Nocardioides sp. JS614]
 gi|119538335|gb|ABL82952.1| RNAse G [Nocardioides sp. JS614]
          Length = 1070

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 120/343 (34%), Positives = 199/343 (58%), Gaps = 12/343 (3%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
            K  +   I+ V+ + Q +LVQ+ K+  G+KGA +T+ +SLAGR+ V +P+      ISR
Sbjct: 472 HKDGQPRKIESVLSSGQSVLVQVTKDPIGHKGARLTSQISLAGRFLVYVPD-GTTSGISR 530

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           K+ +    +   +      VP   GVI+RTA    ++ E+ RD E L   W+++   A  
Sbjct: 531 KLPDTERTR--LKALLKEIVPDSAGVIVRTAAEGASEEELTRDVERLKARWEDIEGKA-K 587

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
             AP L+Y E +L  + +RDL+ +D S++++ GE  +   + ++  + P     + +Y+ 
Sbjct: 588 GSAPQLLYGEPDLTLKVVRDLFTEDFSKLVIQGEDAWDTVQGYVHHVAPDLEARLERYDP 647

Query: 342 -------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REH 393
                     +F    I+ Q+      +V LPS G +II++TEA+  +DVN+G+ T    
Sbjct: 648 GADGAGGKADVFAEYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGG 707

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            +E+T  + NLEAAEEI RQLRLRD+ G+IVVDFIDM  + N   V ++L E L +DR R
Sbjct: 708 NLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTR 767

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
            QV  +++ GL++M+R+RI + +LE+ ++ C +C+G G +  +
Sbjct: 768 HQVAEVTSLGLVQMTRKRIGTGLLEAFSETCEHCQGRGVLVHE 810



 Score = 91.6 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     E +  + GN+YL +V  V PS++AAF+D G  R+  L   E+
Sbjct: 406 TQIGVLEDRVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV 465

Query: 75  HP 76
           + 
Sbjct: 466 NW 467


>gi|225850550|ref|YP_002730784.1| ribonuclease G [Persephonella marina EX-H1]
 gi|225645581|gb|ACO03767.1| ribonuclease G [Persephonella marina EX-H1]
          Length = 467

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 217/469 (46%), Gaps = 25/469 (5%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
           +D    +V +     +++   I     +    ++ +A  D+  + E        +     
Sbjct: 20  EDNEPVEVRVEYKDIIKQSGNIYKGKIKRLIPAMNAAFVDIGEDREAFLPIKDIEE---- 75

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                  + +K    ++VQ+ +     KGA +T  ++L G+Y VLMP      +IS KI 
Sbjct: 76  ------CKNLKVGSPVVVQVKRAPINTKGAKLTCKITLPGKYLVLMPTV-NTVSISSKIE 128

Query: 225 NPVDRKNLKEIARGLEVPA---GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           +P  R  L+E  + +  P      G I+RT  A+ ++  I  DF  L  LW+N+ E + +
Sbjct: 129 DPELRDRLREKIKDILKPFNEEDYGFIIRTVAATASEEAIIEDFLNLKHLWENIIERSKS 188

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
              P L++EE + I   +RD           +            K       ++      
Sbjct: 189 KRTPSLLFEENHKIFSILRDYAGDFSKITTDNLHILKEIKDYISKHFPDKNIKLEIYKNR 248

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
               +    ++  ++ +    V L + GY++I +TEALV+IDVNSG   +   +E+TA  
Sbjct: 249 KVSPYTYYQVDKLINKILSPYVWLRNGGYIVIEETEALVAIDVNSGSHCKHKSLEETAYH 308

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TN+EAA EIARQLRLRDL G+IV+DFIDM+ ++  +++    +  +KKD+  +++   ++
Sbjct: 309 TNVEAAREIARQLRLRDLGGIIVIDFIDMKSEERKKALIDFFRSEVKKDKRPIKIKEFTS 368

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NII 520
            GLLE++R+++  S++   + +C YCKG GYI++ S V   I   +EE          I 
Sbjct: 369 LGLLELTRKKMEESLINQLSDMCEYCKGKGYIKNVSLVIFEIENKLEELKPFVKIKIRIN 428

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
                 +     N+    I   E      I++   I L    +YIE+  
Sbjct: 429 PRLSESI-----NRFIKAINMEEQ-----IDIEYDINLPMDKYYIERVE 467



 Score = 78.5 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)

Query: 1  MANKMLIDASHVEETR----VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56
          M+ ++L+ +S     R     V+  DN   E+  E +   +  GNIY  K+ R+ P++ A
Sbjct: 1  MSRELLVISS-----RHLYLYVIYEDNEPVEVRVEYKDIIKQSGNIYKGKIKRLIPAMNA 55

Query: 57 AFVDYGGNRHGFLPFLEI 74
          AFVD G +R  FLP  +I
Sbjct: 56 AFVDIGEDREAFLPIKDI 73


>gi|50842313|ref|YP_055540.1| putative ribonuclease [Propionibacterium acnes KPA171202]
 gi|282854195|ref|ZP_06263532.1| S1 RNA binding domain protein [Propionibacterium acnes J139]
 gi|50839915|gb|AAT82582.1| conserved protein, putative ribonuclease [Propionibacterium acnes
           KPA171202]
 gi|282583648|gb|EFB89028.1| S1 RNA binding domain protein [Propionibacterium acnes J139]
          Length = 874

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 497 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 555

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 556 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 613

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 614 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 673

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 674 PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 733

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 734 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 793

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 794 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 848



 Score = 95.8 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 429 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 487

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 488 RGRNAVLYAGEVDWAKYGKEGEDK 511


>gi|291451299|ref|ZP_06590689.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354248|gb|EFE81150.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 982

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 6/336 (1%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+ 
Sbjct: 511 HGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 569

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL--NS 282
           +    +   +      VP   GVI+RTA    ++ E++RD E L   W  +++ A   N+
Sbjct: 570 DTERAR--LKGILKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNA 627

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            +P L+Y E ++  R +RD++ +D S++IVSG++ ++    ++  + P     ++++   
Sbjct: 628 SSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSE 687

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
             +F    I+  L      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 688 TDVFATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 747

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 748 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 807

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 808 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 843



 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D+ + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 431 ERVMVVRQSGERTQIGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 490

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 491 KGRNAVLYAGEV 502


>gi|289426168|ref|ZP_06427914.1| S1 RNA binding domain protein [Propionibacterium acnes SK187]
 gi|289427160|ref|ZP_06428876.1| S1 RNA binding domain protein [Propionibacterium acnes J165]
 gi|295130397|ref|YP_003581060.1| ribonuclease, Rne/Rng family [Propionibacterium acnes SK137]
 gi|289153333|gb|EFD02048.1| S1 RNA binding domain protein [Propionibacterium acnes SK187]
 gi|289159629|gb|EFD07817.1| S1 RNA binding domain protein [Propionibacterium acnes J165]
 gi|291376539|gb|ADE00394.1| ribonuclease, Rne/Rng family [Propionibacterium acnes SK137]
 gi|332675236|gb|AEE72052.1| ribonuclease E [Propionibacterium acnes 266]
          Length = 874

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 497 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 555

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 556 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 613

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 614 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 673

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 674 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 733

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 734 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 793

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 794 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 848



 Score = 95.8 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 429 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 487

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 488 RGRNAVLYAGEVDWAKYGKEGEDK 511


>gi|240170915|ref|ZP_04749574.1| ribonuclease E Rne [Mycobacterium kansasii ATCC 12478]
          Length = 966

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/359 (32%), Positives = 191/359 (53%), Gaps = 17/359 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 398 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 457

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W 
Sbjct: 458 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEGDIRADVTRLQERWQ 514

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A              YEE +++ + IRDL+ +D + +IVSG++ +    D++  +
Sbjct: 515 QIEAKAAEVKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDEAWTTINDYVNSV 574

Query: 329 MPSYARIVRQYEDPH--------PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE            +F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 575 APDLVSKLTKYEPAELAEGQTRPDVFAVHRIDEQLTKAMDRKVWLPSGGTLVIDRTEAMT 634

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            IDVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 635 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 694

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G +     
Sbjct: 695 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSSSCPQCSGRGILLHADP 753



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 341 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 400

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 401 NWDAAGLGGADRK 413


>gi|220908778|ref|YP_002484089.1| Rne/Rng family ribonuclease [Cyanothece sp. PCC 7425]
 gi|219865389|gb|ACL45728.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7425]
          Length = 669

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 216/468 (46%), Gaps = 25/468 (5%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E++  +Q +L+Q++KE  G+KG  +T  +S+ GRY VLMP   +G  +SR+I N  +R
Sbjct: 82  ITELLTPQQKVLIQVMKEPTGSKGPRLTGNISMPGRYLVLMPF-GRGVNLSRRIKNENER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  PAGMG+++RT   +  +  I  D E L + W+ ++  A ++ AP L+ 
Sbjct: 141 DRLRA-LGILIKPAGMGLLVRTEAENVPEKAIIEDLEALKKQWETIQLQASSTRAPALLG 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346
            + + I+R +RD+Y  D++ I+V    G +  K  +     +        +         
Sbjct: 200 RDDDFIQRVLRDIYTADVNRIVVDSSLGLKRVKQQLMSWNGNKLPAGVLIDHHREPVSIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EA
Sbjct: 260 EYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIARQLRLR++AG+I+VDFIDM+ +++   V +   ++LK D++R Q+  +S  GL+E
Sbjct: 320 ATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFSKALKADKSRPQIAQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI-----RSQSSVALSILRSVEEYLLQYTAHNIIV 521
           ++R+R   ++ E   + C  C G G++       + S    I R +      +       
Sbjct: 380 LTRKRQGQNIYELFGRNCPTCGGLGHLVHLPGEPEDSTGEPIERYIPSRNADFAPSRRTP 439

Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                       + R+   ++E      + +V      ++     +    +         
Sbjct: 440 ELP---------EPRSDEFDFETSEEPELELVNHPNYQERGNNRRRRRHQRVNDTPSRPP 490

Query: 582 G------SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
                    +  P+ + N       E L P+ ++      +      E
Sbjct: 491 RSLVANLPTTAEPAVEVNGNPPVNGERLEPVERTRPTPVTKVKAEPPE 538



 Score = 87.0 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  V  +++++EL   +       G+IYL  V  V P + AAFV
Sbjct: 1  MPKQIII----AEQHRIAAVFSEDQIQELIVATGSH--QVGDIYLGIVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   R+GF+   ++ P
Sbjct: 55 NIGDSERNGFIHVSDLGP 72


>gi|281413991|ref|ZP_06245733.1| ribonuclease, Rne/Rng family protein [Micrococcus luteus NCTC 2665]
          Length = 777

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 111/350 (31%), Positives = 191/350 (54%), Gaps = 10/350 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 296 GEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDSVGHKGARLTSQVSLPGRYLVYVPGG 355

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       +P   GVI+RTA    ++ E++ D   L   W+
Sbjct: 356 SMTG-ISRKLPDVERSRLKK--ILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWE 412

Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            ++E A  +      L+Y E +L  + +RD++ +D S ++V GE  +   + ++  + P 
Sbjct: 413 GIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWDNIEAYVTYVAPH 472

Query: 332 YARIVRQYEDPHPIFFR----SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
               +  +               ++ QL    + +V LPS G ++I++TEA+  +DVN+G
Sbjct: 473 LLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTG 532

Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           + T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E 
Sbjct: 533 KFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVEC 592

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           L +DR + QV  +++ GL++M+R+R+ + ++E  ++ C +C G G +   
Sbjct: 593 LGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGILIQD 642



 Score = 96.6 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KML+     +  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G
Sbjct: 228 RKMLV-RQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 286

Query: 63  GNRHGFLPFLEIHPDYYQI 81
             R+  L   E++ D  Q+
Sbjct: 287 RGRNAVLYAGEVNWDAAQL 305


>gi|239979426|ref|ZP_04701950.1| hypothetical protein SalbJ_08319 [Streptomyces albus J1074]
          Length = 879

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 6/336 (1%)

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
                I+  +K+ Q +LVQ+ K+  G+KGA +T+ +SL GRY V +P  S    ISRK+ 
Sbjct: 408 HGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 466

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL--NS 282
           +    +   +      VP   GVI+RTA    ++ E++RD E L   W  +++ A   N+
Sbjct: 467 DTERAR--LKGILKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNA 524

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            +P L+Y E ++  R +RD++ +D S++IVSG++ ++    ++  + P     ++++   
Sbjct: 525 SSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSE 584

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401
             +F    I+  L      +V LPS G ++I++TEA++ +DVN+G+ T +   +E+T  +
Sbjct: 585 TDVFATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 644

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            NLEAAEEI RQLRLRDL G++V+DFIDM  + N   V ++L E L +DR + QV  +++
Sbjct: 645 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 704

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
            GL++M+R+R+   +LES ++ C +C G G I    
Sbjct: 705 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 740



 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     E T++ VL D+ + E     E      GN+YL KV  V PS++AAF+D G
Sbjct: 328 ERVMVVRQSGERTQIGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 387

Query: 63  GNRHGFLPFLEI 74
             R+  L   E+
Sbjct: 388 KGRNAVLYAGEV 399


>gi|269978196|ref|ZP_06185146.1| ribonuclease G [Mobiluncus mulieris 28-1]
 gi|269933705|gb|EEZ90289.1| ribonuclease G [Mobiluncus mulieris 28-1]
          Length = 806

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/345 (33%), Positives = 199/345 (57%), Gaps = 5/345 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+E +    ++LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 288 GEVNWDAAGLNSKTGRIEEALSPGDMVLVQVTKDPIGHKGARLTSQITLAGRHLVLVPSG 347

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +      +    P + +   +      +PAG GVI+RTA    T+ +++ D E L+++W+
Sbjct: 348 AMTGISRKL---PEEERKRLKTVLKTMIPAGFGVIVRTAAEGATEEQLRVDVERLVKIWE 404

Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           ++ +       +P L++ E  L  R +RD++ +DIS + + GE+ +     ++K L P  
Sbjct: 405 DIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHTISKYVKELSPEL 464

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
              +  +ED   +F    I+ QL    + +V LPS GY+II++TEA+  IDVN+GR    
Sbjct: 465 GERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGA 524

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L +DR
Sbjct: 525 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDR 584

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
            R QV  +++ GL++M+R+R+   ++E+ +  C  C G G+I   
Sbjct: 585 TRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 629



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           +V +L D  + E       +  + GN+YL KV  V  S++AAFVD G  R+  L   E++
Sbjct: 232 QVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 291

Query: 76  PD 77
            D
Sbjct: 292 WD 293


>gi|253575701|ref|ZP_04853037.1| ribonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845039|gb|EES73051.1| ribonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 405

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/329 (33%), Positives = 183/329 (55%), Gaps = 2/329 (0%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
           +       + K+ K++  I E++K  Q L+VQ+VKE  GNKGA VTT+ SL GR+ V MP
Sbjct: 79  IDDVLHPHLEKQPKQKPSIAELLKPGQELVVQVVKEAIGNKGARVTTHYSLPGRWLVYMP 138

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
                    +      + K   ++          G+ILRT         I  D   L + 
Sbjct: 139 TAGYVAVSKKIA--CEEEKQRLKLLGEELRSEEEGLILRTVAEEEDGKAIAEDLAQLRKQ 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           W  ++E A ++ AP +++++ ++I+R +RD+Y  +  E+I+   +   EA  F++ ++P 
Sbjct: 197 WAAIQEKAKHAAAPVVLHQDLSMIQRLMRDVYSPETDELIMDCPEQAEEALAFLQAMLPG 256

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               +  +E   PIF    +  Q++   Q ++ LP  GY++ + TEAL  IDVN+G+ T 
Sbjct: 257 ETPRIIVHESEVPIFDYYEVRPQMEKDFQRKIWLPGGGYLVWDTTEALTVIDVNTGKFTG 316

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +EDT  +TNLEAA+E+AR +RLRD  G+I+VDFIDM   ++  +V ++L+++L  DR
Sbjct: 317 GDSLEDTVFRTNLEAAQEMARLIRLRDTGGIIIVDFIDMNSDEHRSAVWERLEQALAGDR 376

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLEST 480
            +  +   +  GLLEM+R+R+R  +   +
Sbjct: 377 TQHHILGWTKLGLLEMTRKRMREEITVIS 405



 Score = 98.9 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +M I       T + +L + ++ E   E    + + G+    KV  V P +QAAFVD G
Sbjct: 12 KRM-IVHCGPGSTEIALLENGKLVEYAAERSQHRGLVGSFVKGKVVNVIPGMQAAFVDIG 70

Query: 63 GNRHGFLPFLEI-HPDYYQIPF 83
            ++ FL   ++ HP   + P 
Sbjct: 71 QKKNAFLYIDDVLHPHLEKQPK 92


>gi|294787320|ref|ZP_06752573.1| putative ribonuclease, Rne/Rng family domain protein [Parascardovia
           denticolens F0305]
 gi|294484676|gb|EFG32311.1| putative ribonuclease, Rne/Rng family domain protein [Parascardovia
           denticolens F0305]
          Length = 1028

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 127/436 (29%), Positives = 227/436 (52%), Gaps = 16/436 (3%)

Query: 80  QIPFSDRQA---LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
           Q   + R+    L+           +V +D    +  I +   +  V  I     +    
Sbjct: 497 QDFLARREKVDRLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLP 556

Query: 137 SIISANNDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194
           S+ +A  D+  +   V   G    D  +   +   ++   +    +LVQ+ K+  G+KGA
Sbjct: 557 SMEAAFVDIGQHRNGVLYAGEVNWDATRLEGQPRLVEHAFRPGDDVLVQVTKDPIGHKGA 616

Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254
            +T+ +++AGRY VL+P+      +SRK+ +    +   +       P  MGVI+RTA  
Sbjct: 617 RLTSQITVAGRYLVLVPSGG-ITGVSRKLPDRERTR--LKSIVSTISPDNMGVIIRTAAE 673

Query: 255 SRTKIEIKRDFEYLMRLWDNVRE---LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311
             ++  +KRD  +L+R W +V++      +S  PHL+  E +++ R IRD++  D +++I
Sbjct: 674 GVSEDALKRDMGHLVRQWQSVQDNLKKYESSKRPHLLLGEPDVVIRVIRDIFNDDFNKLI 733

Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPS 367
           V G+  Y     ++++  P     + +++         F R  I+ QL    + +V LPS
Sbjct: 734 VEGDGVYERIARYLEVAAPDLKDRLEKWDPEEHEGKDVFDRWSIDSQLRKGMERKVYLPS 793

Query: 368 RGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
            G ++I++TEA+ +IDVN+GR   +   +E+T  + NLEAAEEI RQLRLRD+ G+I++D
Sbjct: 794 GGSLVIDRTEAMTTIDVNTGRFIGKGQSLEETVTKCNLEAAEEIVRQLRLRDIGGMIMID 853

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           F+DM   +N   V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  
Sbjct: 854 FVDMVMPQNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPT 913

Query: 487 CKGAGYIRSQSSVALS 502
           C G G+I        S
Sbjct: 914 CGGRGFILHDEPTVSS 929



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++++   H   ++V VL DN + E       +    GNIY  +V  V PS++AAFVD G 
Sbjct: 508 RLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLPSMEAAFVDIGQ 567

Query: 64  NRHGFLPFLEIHPD 77
           +R+G L   E++ D
Sbjct: 568 HRNGVLYAGEVNWD 581


>gi|315227119|ref|ZP_07868906.1| ribonuclease G [Parascardovia denticolens DSM 10105]
 gi|315119569|gb|EFT82702.1| ribonuclease G [Parascardovia denticolens DSM 10105]
          Length = 1035

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 127/436 (29%), Positives = 227/436 (52%), Gaps = 16/436 (3%)

Query: 80  QIPFSDRQA---LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
           Q   + R+    L+           +V +D    +  I +   +  V  I     +    
Sbjct: 504 QDFLARREKVDRLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLP 563

Query: 137 SIISANNDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194
           S+ +A  D+  +   V   G    D  +   +   ++   +    +LVQ+ K+  G+KGA
Sbjct: 564 SMEAAFVDIGQHRNGVLYAGEVNWDATRLEGQPRLVEHAFRPGDDVLVQVTKDPIGHKGA 623

Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254
            +T+ +++AGRY VL+P+      +SRK+ +    +   +       P  MGVI+RTA  
Sbjct: 624 RLTSQITVAGRYLVLVPSGG-ITGVSRKLPDRERTR--LKSIVSTISPDNMGVIIRTAAE 680

Query: 255 SRTKIEIKRDFEYLMRLWDNVRE---LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311
             ++  +KRD  +L+R W +V++      +S  PHL+  E +++ R IRD++  D +++I
Sbjct: 681 GVSEDALKRDMGHLVRQWQSVQDNLKKYESSKRPHLLLGEPDVVIRVIRDIFNDDFNKLI 740

Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPS 367
           V G+  Y     ++++  P     + +++         F R  I+ QL    + +V LPS
Sbjct: 741 VEGDGVYERIARYLEVAAPDLKDRLEKWDPEEHEGKDVFDRWSIDSQLRKGMERKVYLPS 800

Query: 368 RGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
            G ++I++TEA+ +IDVN+GR   +   +E+T  + NLEAAEEI RQLRLRD+ G+I++D
Sbjct: 801 GGSLVIDRTEAMTTIDVNTGRFIGKGQSLEETVTKCNLEAAEEIVRQLRLRDIGGMIMID 860

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           F+DM   +N   V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  
Sbjct: 861 FVDMVMPQNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPT 920

Query: 487 CKGAGYIRSQSSVALS 502
           C G G+I        S
Sbjct: 921 CGGRGFILHDEPTVSS 936



 Score = 90.8 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
           ++++   H   ++V VL DN + E       +    GNIY  +V  V PS++AAFVD G 
Sbjct: 515 RLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLPSMEAAFVDIGQ 574

Query: 64  NRHGFLPFLEIHPD 77
           +R+G L   E++ D
Sbjct: 575 HRNGVLYAGEVNWD 588


>gi|120404901|ref|YP_954730.1| ribonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957719|gb|ABM14724.1| ribonuclease, Rne/Rng family [Mycobacterium vanbaalenii PYR-1]
          Length = 961

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 197/355 (55%), Gaps = 13/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +       Q  I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 422 GEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 481

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D E L + W 
Sbjct: 482 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEEDIRSDVERLQKRWT 538

Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +           + A   +YEE +++ + IRDL+ +D + + VSG+  ++   D++  +
Sbjct: 539 EIEAKAAEITEKKAGAAVALYEEPDVLVKVIRDLFNEDFTGLTVSGDHAWKTINDYVTAV 598

Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
            P     + QYE   P     F    I+ QL      +V LPS G ++I++TEA+  +DV
Sbjct: 599 APELLPRMTQYEPASPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDV 658

Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           N+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V ++L
Sbjct: 659 NTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRL 718

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            E+L +DR R QV  +++ GL++++R+++ + ++E+ +  C++C G G +     
Sbjct: 719 TEALARDRTRHQVSEVTSLGLVQLTRKKLGTGLIEAFSTTCSHCAGRGIMLHGDP 773



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 365 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 424

Query: 75  HPD 77
           + +
Sbjct: 425 NWE 427


>gi|307700936|ref|ZP_07637961.1| S1 RNA binding domain protein [Mobiluncus mulieris FB024-16]
 gi|307613931|gb|EFN93175.1| S1 RNA binding domain protein [Mobiluncus mulieris FB024-16]
          Length = 806

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/345 (33%), Positives = 198/345 (57%), Gaps = 5/345 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+E +    ++LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 288 GEVNWDAAGLNSKTGRIEEALSPGDMVLVQVTKDPIGHKGARLTSQITLAGRHLVLVPSG 347

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +      +    P + +   +      +PAG GVI+RTA    T+ ++  D E L+++W+
Sbjct: 348 AMTGISRKL---PEEERKRLKTVLKTMIPAGFGVIVRTAAEGATEEQLCVDVERLVKIWE 404

Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           ++ +       +P L++ E  L  R +RD++ +DIS + + GE+ +     ++K L P  
Sbjct: 405 DIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHTISKYVKELSPEL 464

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391
              +  +ED   +F    I+ QL    + +V LPS GY+II++TEA+  IDVN+GR    
Sbjct: 465 GERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGA 524

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
              +E+T  + NLEAAEEI RQLRLRD+ G++V+DF+DM  + N   V ++L E L +DR
Sbjct: 525 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDR 584

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
            R QV  +++ GL++M+R+R+   ++E+ +  C  C G G+I   
Sbjct: 585 TRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 629



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           +V +L D  + E       +  + GN+YL KV  V  S++AAFVD G  R+  L   E++
Sbjct: 232 QVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 291

Query: 76  PD 77
            D
Sbjct: 292 WD 293


>gi|296139195|ref|YP_003646438.1| ribonuclease, Rne/Rng family [Tsukamurella paurometabola DSM 20162]
 gi|296027329|gb|ADG78099.1| ribonuclease, Rne/Rng family [Tsukamurella paurometabola DSM 20162]
          Length = 1040

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/562 (24%), Positives = 238/562 (42%), Gaps = 30/562 (5%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    +LVQ+ K+  G+KGA +TT +SLAGR+ V +P  
Sbjct: 456 GEVNWDAAGLDGNARKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGG 515

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++ LKEI + +      GVI+RTA    +  E+  D   L   W 
Sbjct: 516 GSAG-ISRKLPDTERKR-LKEILKEIVPA-DAGVIIRTASEGVSAEELAGDVSRLQAQWA 572

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
              E A  +     +YEE +L+ + +RDL+ +D S++++ G   +   + ++  + P   
Sbjct: 573 E-IEEASKAKGVRALYEEPDLLVKVVRDLFNEDFSKLVIEGGTAWGTVEKYVSTVAPDLM 631

Query: 334 RIVRQYEDPH----PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
             V ++E  H     +F    I+ QL      +V LPS G ++I++TEA+  +DVN+G+ 
Sbjct: 632 PRVERFEKRHADAPDVFAAYRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKF 691

Query: 390 T-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           T     +E+T  + NLEAAEEI RQ+RLRD+ G+IVVDFIDM  + N   V ++L E+L 
Sbjct: 692 TGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALG 751

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
           +DR R QV  +++ GL++M+R+RI + ++E+ +  C  C G G I     V  +      
Sbjct: 752 RDRTRHQVSEVTSLGLVQMTRKRIGTGLVEAFSTPCQACSGRGIIIHADPVETAGGDDSG 811

Query: 509 EYLLQYTAHNIIVHTHSDVVLYL-----LNQKRATIVEYEARFGVSINVVIGIELADKLF 563
               +                        + K A     E     ++      E +    
Sbjct: 812 RSGEKSEGSRKKRKRSKSDGAQQPVVAPKDDKAAHKS--EHPMFKAMAQHHDDEDSTP-- 867

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            ++     +A+       G  ++  +         +     P   + S     ++  +E 
Sbjct: 868 -VDGAQDGEAVAEAPADAGKPAEQSTEPTQEPKRERRRRREPKQDAPSQAATIESAPTET 926

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +              + A +   A  V+   +                 +         A
Sbjct: 927 APAP-----------QAAAESTPAAPVAAEPAAAEPASAVAPSAPRRRRVARKAPTTTSA 975

Query: 684 HGFTENYDVSIPPVSTPEMESS 705
              T   D++      P + + 
Sbjct: 976 AAQTIVVDLAQEAPGAPAVTAP 997



 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D  + E    S     + GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 399 TQVAVLEDGVLVEHFVTSSSSASMVGNIYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEV 458

Query: 75  HPD 77
           + D
Sbjct: 459 NWD 461


>gi|163841977|ref|YP_001626382.1| ribonuclease E [Renibacterium salmoninarum ATCC 33209]
 gi|162955453|gb|ABY24968.1| ribonuclease E [Renibacterium salmoninarum ATCC 33209]
          Length = 971

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 131/565 (23%), Positives = 242/565 (42%), Gaps = 26/565 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  K       I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 412 GEVNWDAAKLDGAPRRIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGG 471

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  +       +P   GVI+RTA    ++ E+  D   L   W+
Sbjct: 472 SMTG-ISRKLPDVERNRLKR--ILKDNLPENAGVIVRTAAEGASEEELTHDINRLRVQWE 528

Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            +   A ++      ++Y E +L  + +RD++ +D +++IVSGE+ +   + ++  + P 
Sbjct: 529 GIESQASSTKTLAPEMLYGEPHLTIKVVRDVFNEDFAKLIVSGEEAWDTVEAYVTYVAPD 588

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390
               + ++     IF    I+ Q+    + +V LPS G ++I++TEA+  +DVN+G+ T 
Sbjct: 589 LVDRLEKWTSNEDIFAAHRIDEQISKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTG 648

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
               +E+T  + NLEAAEE+ RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +D
Sbjct: 649 SGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRD 708

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
           R + QV  +++ GL++M+R+R+ + +LE   + C  C G G +  +  V     R     
Sbjct: 709 RTKHQVAEVTSLGLIQMTRKRMGTGLLEVFGEQCEACAGRGVVTHEEPVEH---RRTTHT 765

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
           +     +    +          N+ R                    ++  +   + +   
Sbjct: 766 IAAEQHNPRAENQRPSRGERKRNRNRQQ-----------------NQVEPEAEELTEDEK 808

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                     + + + A       +     +A+  + K ++  D     +  E   + R 
Sbjct: 809 SAKASAARAALANIAAAAQAAHEHDGEEPIDAVDSVVKPQASHDAAVLTIGGEKVEIPRG 868

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                    P         V +    ++    S                   ++      
Sbjct: 869 EHVDDAPHMPELTLDGLADVFNHLVPEDSEPKSRSRRPRRHRAAGRAQGAANSNEIQSIE 928

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKK 715
             S    + P  ++ ++  DP  KK
Sbjct: 929 GESAGGKTVPVAKAPSAKVDPESKK 953



 Score = 85.8 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%)

Query: 13  EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72
           E  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD    R+  L   
Sbjct: 353 ERIQIGVLEDGILAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDICRGRNAVLYAG 412

Query: 73  EIHPDYYQIPFSDR 86
           E++ D  ++  + R
Sbjct: 413 EVNWDAAKLDGAPR 426


>gi|118618976|ref|YP_907308.1| ribonuclease E Rne [Mycobacterium ulcerans Agy99]
 gi|118571086|gb|ABL05837.1| ribonuclease E Rne [Mycobacterium ulcerans Agy99]
          Length = 988

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 112/359 (31%), Positives = 191/359 (53%), Gaps = 17/359 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D          I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +   
Sbjct: 416 GEVNWDAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVAGA 475

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D   L   W+
Sbjct: 476 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERWN 532

Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +   A+             YEE +++ + IRDL+ +D + ++VSG+  +    +++  +
Sbjct: 533 QIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSV 592

Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE            +F    I+  L      +V LPS G ++I++TEA+ 
Sbjct: 593 APDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEHLAKAMDRKVWLPSGGTLVIDRTEAMT 652

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +DVN+G+ T     +E T  + NLEAAEEI RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 653 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 712

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C +C G G +     
Sbjct: 713 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPHCSGRGILLHADP 771



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S     + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 359 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 418

Query: 75  HPDYYQIPFSDRQ 87
           + D   +  +DR+
Sbjct: 419 NWDAAGLGGADRK 431


>gi|311741290|ref|ZP_07715114.1| ribonuclease E [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303460|gb|EFQ79539.1| ribonuclease E [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1294

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 140/581 (24%), Positives = 240/581 (41%), Gaps = 23/581 (3%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G       K   R   ++  +K+   +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 479  GEIDWRKTKLHGRARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPG- 537

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++   +   G  VP   G I+RTA  +  +  I  D   L   W+
Sbjct: 538  GRSAGISRKLPAPERKR--LKDILGRVVPGDGGAIIRTAAENVPEEAIATDVNRLHSRWE 595

Query: 274  N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +      +E +     P  +YEE N++ + +RDL+ +D +E+IV G++ +   + ++  +
Sbjct: 596  DIVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSM 655

Query: 329  MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P  A  V +Y          F    I+ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 656  APDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 715

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 716  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 775

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499
            KE+L +DR R QV  +++ GL++M+R+R+ + ++E+ +  C  C G G I      + + 
Sbjct: 776  KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECECCNGRGIIIHQYPVEEAE 835

Query: 500  ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
                 +        +   +     H    + +   +     E  ++              
Sbjct: 836  DEQRSKHSGRKPKAHKKQHHDPQQHPA-AVAMHKHELDDAAESSSKPKRFKKTQA-PVYG 893

Query: 560  DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK-NIECVWQDEALLPIPKSESLEDIQDN 618
             +     + S   +L +    V  D + P+      E    D                  
Sbjct: 894  TESEEAARESAKTSLEDLVANVVVDERGPAQSHGGSEEHSGDHDRSKERGRGRGRRRARK 953

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGV---VSDVSSIQNVIDDSFDMYMEPSDITN 675
                E + +             + +  +       +D  +    +  +       S    
Sbjct: 954  RTQTEVSDIEAIAYAAADNAAESDEVQEFNSYVPDADTDADSGAVAKAHPGAGARSKRGK 1013

Query: 676  HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                       T             E     ++ +    KT
Sbjct: 1014 KPRRATRRSKATHTVAGGEQKAPEKETAPEKTAPEKATGKT 1054



 Score = 88.1 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    +E +  + GNIYL +V  V PS++AAFVD G  R+G L   EI
Sbjct: 422 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 481


>gi|289704627|ref|ZP_06501057.1| S1 RNA binding domain protein [Micrococcus luteus SK58]
 gi|289558660|gb|EFD51921.1| S1 RNA binding domain protein [Micrococcus luteus SK58]
          Length = 1149

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/350 (31%), Positives = 191/350 (54%), Gaps = 10/350 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 338 GEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGG 397

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       +P   GVI+RTA    ++ E++ D   L   W+
Sbjct: 398 SMTG-ISRKLPDVERSRLKK--ILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWE 454

Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            ++E A  +      L+Y E +L  + +RD++ +D S ++V GE  +   + ++  + P 
Sbjct: 455 GIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGETTWDNIEAYVTYVAPH 514

Query: 332 YARIVRQYEDPHPIFFR----SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
               +  +               ++ QL    + +V LPS G ++I++TEA+  +DVN+G
Sbjct: 515 LLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTG 574

Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           + T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E 
Sbjct: 575 KFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVEC 634

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           L +DR + QV  +++ GL++M+R+R+ + ++E  ++ C +C G G +   
Sbjct: 635 LGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGILIQD 684



 Score = 96.2 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KML+     +  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G
Sbjct: 270 RKMLV-RQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 328

Query: 63  GNRHGFLPFLEIHPDYYQI 81
             R+  L   E++ D  Q+
Sbjct: 329 RGRNAVLYAGEVNWDAAQL 347


>gi|123969236|ref|YP_001010094.1| ribonuclease E/G [Prochlorococcus marinus str. AS9601]
 gi|123199346|gb|ABM70987.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. AS9601]
          Length = 606

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/586 (22%), Positives = 252/586 (43%), Gaps = 15/586 (2%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180
           ++  I   + E     I +A  ++  + ++      +  P + K+  + I E+++ +Q +
Sbjct: 33  QIGDIFLGTVENVLPGIDAAFINIGESEKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE  G+KG  +T  +S+ G+Y +L P   +G  ISRK  N    ++  +    L 
Sbjct: 93  LVQVIKEPTGSKGPRLTGSISIPGKYLILQP-YGQGVNISRK-INTETERSRLKALGVLI 150

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   G++ RT      +  +  D E+L++ W+N+ +++  S  P+L+  + +   + +R
Sbjct: 151 KPPSTGLLFRTEAEKIKEELLIEDLEHLIQQWENILKVSEASNPPNLIKRDDDFSLKILR 210

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   +    +I+  +     AKDF+     +             I  +  I+  +    Q
Sbjct: 211 DYIKESTKSLIIDSKFSVIRAKDFLINYESNVDIEFHDNSLNQHILEKYEIKKTIQKALQ 270

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY+II  TEAL  IDVNSG  TR      T L TN EAA EI+RQ++LR++ 
Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDME +++   + +    ++K D AR Q+  ++  GL+E++R+R   ++ E  
Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
            K C+ C G G++ +  +  +S L+          ++N+      D+V      ++  I+
Sbjct: 391 GKKCSSCDGTGHVENILNHEISYLKIKNVENKSNQSNNLT---SLDIVTSQSTDEQEKII 447

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           + E      ++               K       +N  +    +          + V+ +
Sbjct: 448 DKELLNSKDLSKENSSN---------KKENENDNLNQSNSKEKNIITVDLTNEEKIVFSE 498

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
             + P+ K        +N V  + +    ++    ++         +    +   I+   
Sbjct: 499 LGINPLIKLGKEYLTSNNFVRLKESNKETEKPLDNKKATSKKTKKISQSGEEKIQIKIEA 558

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
           + S           ++ ++        E  D            S++
Sbjct: 559 NASSKDKTSNKTNESNEVVSTDKKDQIELTDELNNARKKRRRSSAS 604



 Score = 75.4 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  +L D+RV+EL       +   G+I+L  V  V P + AAF+
Sbjct: 1  MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVSDLGP 72


>gi|194477012|ref|YP_002049191.1| ribonuclease E [Paulinella chromatophora]
 gi|171192019|gb|ACB42981.1| ribonuclease E [Paulinella chromatophora]
          Length = 646

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 183/324 (56%), Gaps = 4/324 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  L+L GRY VL P+ S+G  ISR+I +  +R
Sbjct: 82  ITELLEPRQKVLVQVIKEPTGTKGPRLTGNLTLPGRYLVLQPH-SRGVNISRRIRSESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P G  +++RT     ++  +  D E L+  W+ +++ A  ++ P L+ 
Sbjct: 141 NRLRA-LGVLIKPPGASLLIRTEAEEVSEELLIEDLESLLHQWEAIQQAAETAIPPVLLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RDLY  ++ +++V         K F+ ++  +    V  + D   I    
Sbjct: 200 RDQDFINRILRDLYSPELLKVVVDSSDAVNRVKGFLGVVQTNLL--VEHHNDSKEILESY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   +    +  V LPS GY+II   EAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 RVNAAIRDALKPRVELPSGGYIIIEPMEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I+VDFIDME +++   + +   ++ + D AR Q+  ++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIVDFIDMELRRDQLQLLEHFIQATRDDTARPQIAQLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493
           +R   ++ E   +VC+ C G G++
Sbjct: 378 KRQGQNIYELFGRVCSTCSGLGHV 401



 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R+  VL + RV+EL       +   G++YL  V  V P + AAF+
Sbjct: 1  MPQQIII----AEQLRIAAVLNEERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVSDLGP 72


>gi|297626046|ref|YP_003687809.1| ribonuclease, Rne/Rng family [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921811|emb|CBL56371.1| Ribonuclease, Rne/Rng family [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 928

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/345 (34%), Positives = 190/345 (55%), Gaps = 9/345 (2%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
            K    I++ +K  Q +LVQ  K+  G KGA +T ++SL GRY V  P+      ISRK+
Sbjct: 566 HKGSRRIEDALKPGQTVLVQASKDPIGAKGARLTGHISLPGRYVVYSPD-GHLSGISRKL 624

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
           ++    ++  +      +     VI+RTA    T+  +++D + L   WD + +      
Sbjct: 625 SDTE--RHRLKNIVNDAIDDSSSVIVRTAAEGVTEEALRQDVDRLKAHWDVIEKKVAEGH 682

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI-----VRQ 338
           +P  +Y E +L  R +RDL+ +D +E+IV G+ G  +A + +   +   A          
Sbjct: 683 SPQQLYVEPDLTLRIVRDLFTEDFNELIVEGDGGPEDAFETVHEYVEHVAPNLADRLEHW 742

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIED 397
                 +F +  I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+ T     +E+
Sbjct: 743 DTTKGDLFTKYRIDEQISKALERKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGAGGNLEE 802

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           T  + NLEAA+EI RQ+RLRDL G+IVVDFIDM    N   + ++L E L +DR R QV 
Sbjct: 803 TVTKNNLEAADEIVRQMRLRDLGGMIVVDFIDMVLPANRELLLRRLVECLGRDRTRHQVS 862

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +++ GL++M+R+RI + + E+ T+ C  C G GY+R    VA  
Sbjct: 863 EVTSLGLVQMTRKRIGTGLAEAFTEECETCGGRGYVRHDEPVASQ 907



 Score = 96.6 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM+I     + T++ VL D  + E   + +    + GNIYL KV  V PS++AAF+D G
Sbjct: 487 RKMII-RQREDYTQLAVLEDGLLVEHYVDRKASASLIGNIYLGKVQNVLPSMEAAFIDIG 545

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 546 RGRNAVLYAGEVNWD 560


>gi|258645285|ref|ZP_05732754.1| cytoplasmic axial filament protein [Dialister invisus DSM 15470]
 gi|260402635|gb|EEW96182.1| cytoplasmic axial filament protein [Dialister invisus DSM 15470]
          Length = 472

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 191/391 (48%), Gaps = 5/391 (1%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               +L Q++K +   KGA +T  +S+ G+Y+V +  T       +  +     +   + 
Sbjct: 81  EGSPILAQVIKSDTDMKGALITEKISMLGKYAVTLSGTGYIGVSKKIRS--ESVRKRLKE 138

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                    MG+I+RTA  +    E ++D   L   WD +++      +P L+Y E ++I
Sbjct: 139 IGKEICAEHMGLIIRTAAENADMDEFRKDITRLKENWDIIQKRFRMEKSPTLLYRESDII 198

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            +A+RD   K    +I    K Y       +         +  Y++  P+  +  IE Q+
Sbjct: 199 VKALRDYVNKGTEILITDNRKIYERICKLNESEHTIEPDKISLYKERMPLLKKEEIEEQI 258

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA-LQTNLEAAEEIARQL 414
             L +  V LPS G +II  TEAL  IDVNSG   R+    + A    N EAA EIARQ+
Sbjct: 259 HLLFKRRVELPSGGSLIIEDTEALTVIDVNSGAFNRQGIPHEEAVYLINQEAAIEIARQV 318

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR + G+I++DFIDM+++   + +   L+  LKKD+ +  V  +++ GL+EM+R+R   
Sbjct: 319 RLRGIGGMILIDFIDMQKENQKKDIVGILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTH 378

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S++++   +C  C G G+I S  SV   I R +E       A ++++  H +V   L  +
Sbjct: 379 SLIKNYCDICPICNGTGHILSVQSVIQQIHRELETVKRYGGARDLVIRCHPEVAARLKEE 438

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++A    +   F   I +     L  +++ +
Sbjct: 439 QKAG--YFMKYFNREIMIEENDHLNREVYSV 467



 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L D++  +ET + V R +++ +L+ E +   +I G IY   V  + P++   FVD
Sbjct: 1  MNRVILSDST--DETILAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVD 58

Query: 61 YGGNRHGFL 69
           G  ++ FL
Sbjct: 59 IGIGKNAFL 67


>gi|284099270|ref|ZP_06385987.1| ribonuclease, Rne/Rng family [Candidatus Poribacteria sp. WGA-A3]
 gi|283830400|gb|EFC34610.1| ribonuclease, Rne/Rng family [Candidatus Poribacteria sp. WGA-A3]
          Length = 327

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/319 (28%), Positives = 170/319 (53%)

Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
           +         ++ ++K D  +L  +W ++ +      AP  ++ + +L  R +RDL+ K+
Sbjct: 1   IHCPDGEQGVSEEDLKSDVGFLTAMWQDIVKKQDIYPAPAALHTDLDLTLRVVRDLFTKN 60

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
           +  +++  ++     K+F++  +P     +  Y+    +F   GIE+++      +V L 
Sbjct: 61  VKRLLIDSKEECAAVKEFVRRYLPDQTSRIVHYDKDESLFDHLGIEMEISRALSRKVWLK 120

Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
           S G+++I+ TEA+  +DVN+GR   +   E+T L+ NLEAA EIA Q++LR + G+I++D
Sbjct: 121 SGGHIVIDHTEAMTVVDVNTGRYVGKRDQEETILRNNLEAAREIAYQIKLRGIGGIIIID 180

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDME  +N   V + L +++  D+AR ++  IS+ GL+E+SR+R+R  +L + + VC+ 
Sbjct: 181 FIDMERGRNRDKVYQALVDAMGNDKARTRISRISDLGLIEISRERVREDLLRTLSDVCSD 240

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G GY RS  +V   +LR +           ++V  H  +V  L   +   + + +  F
Sbjct: 241 CDGRGYTRSALTVVYDMLRDIRRIGRAAGQQTVVVGAHPHIVEMLQETEPEALEQLQREF 300

Query: 547 GVSINVVIGIELADKLFYI 565
              I V     L  + + +
Sbjct: 301 HYQIIVNADPLLPLEQYDL 319


>gi|56964368|ref|YP_176099.1| ribonuclease G [Bacillus clausii KSM-K16]
 gi|56910611|dbj|BAD65138.1| ribonuclease G [Bacillus clausii KSM-K16]
          Length = 497

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 102/402 (25%), Positives = 186/402 (46%), Gaps = 12/402 (2%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I + +     + VQ+ KE    KG  ++  +S+ G+Y V MP  +      R    
Sbjct: 87  QTKSISQFVSPGDTIAVQVTKEGTNEKGPRLSGVVSIPGKYVVYMPEGAYVAVSRRI--E 144

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               +     A   ++    G I+RTA A+    E++RD  +L  LW         +   
Sbjct: 145 SEHVRASLHTALENKLQHNEGAIVRTAAANAPLEEVERDLVFLRTLWQKTLRHQEQAP-- 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L+Y    L++  +     + ++E++V     YR  K  ++       +    Y      
Sbjct: 203 ALIYRAATLVETLLLGYLNEQVTEVVVDDIDDYRLMKQLVQTDDKDKVK---LYAHKGSS 259

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F  + I  QL    +  + L +  +++I++TEA+  IDVN+G+ T +    +T L  N  
Sbjct: 260 FQSARISAQLAKAQKRRIWLKNGAFLVIDETEAMTVIDVNTGKFTGKFAQSETVLAVNKL 319

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA E A+Q+RLR+ +G+IV+DFIDM+   +  +V++ ++ +LKKDR +  V   +  GLL
Sbjct: 320 AAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLAVQQTMERALKKDRVKTSVRGFTKLGLL 379

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EM+R++ R S+ ++ T  C  C G G + +    A  + R + E      A  ++V   +
Sbjct: 380 EMTRKKTRLSMAKTVTVECKACAGTGAVLAGHGHAFMLERLILEE----QAEALVVAVTA 435

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIE 566
           ++   L+          E+  GV++ +V    L     + I+
Sbjct: 436 ELRSLLVGVGDLYKERLESLAGVTLFLVTDNSLPQAKPYSID 477



 Score =  101 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 1  MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M   ++I  +     R  V+L +N V E  FES  + Q+ G+++L KV RV P ++AAFV
Sbjct: 1  MEQSIVI--TKGINKREAVLLENNEVVEWFFESNDRPQMVGSVFLGKVERVLPGMEAAFV 58

Query: 60 DYGGNRHGFLPFLEI 74
          D G  ++GFL   E+
Sbjct: 59 DIGTGKNGFLHRDEL 73


>gi|328907072|gb|EGG26838.1| S1 RNA binding domain protein [Propionibacterium sp. P08]
          Length = 878

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+  +K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 501 GEVDWAKYGKEGEDKRIEHALKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 559

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 560 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLIRDINRLKAQWE 617

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +   A NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 618 VIERKASNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPNDAYDTIKAYVDHVA 677

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +         D    F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 678 PEMVSRLTHWKHDDKDPFAEYRIDEQIAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 737

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IVVDFIDM    N   + ++L E L
Sbjct: 738 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLPTNRELLVRRLTECL 797

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 798 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEECEACGGRGYHRFDKPVDSQ 852



 Score = 90.4 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V  S++AAF+D G
Sbjct: 433 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLSSMEAAFIDIG 491

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 492 RGRNAVLYAGEVDWAKYGKEGEDK 515


>gi|257068982|ref|YP_003155237.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810]
 gi|256559800|gb|ACU85647.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810]
          Length = 952

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 192/353 (54%), Gaps = 7/353 (1%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 508 GEVNWDAVGLEGQPRRIELALKSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFVPGG 567

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       +P   GVI+RTA    ++ E+  D E L   W+
Sbjct: 568 SMTG-ISRKLPDTERARLKK--IMRQIIPEDAGVIVRTAAEGASEEELTHDVERLRAQWE 624

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + +   +  AP  + +E ++  + +RD++ +D + +IV G+K + E   ++  + P   
Sbjct: 625 KITKAQKSRSAPVALSQEPDIAIKVVRDVFNEDFTSLIVEGDKVHDEVHSYVSDVAPDLL 684

Query: 334 RIVRQY---EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
             V ++        +F +  I+ QL      +V LPS G ++I++TEA+  +DVN+G+ T
Sbjct: 685 DRVTRHVPTSPGKDVFAKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGKFT 744

Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L +
Sbjct: 745 GSGGSLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGR 804

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           DR + QV  +++ GL++M+R+R+   ++E+ +  C +C G G +         
Sbjct: 805 DRTKHQVAEVTSLGLVQMTRKRVGQGLVETFSHSCEHCNGRGLLVDMDGEHQH 857



 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++       T++ VL D+ + E     + +  + GN+Y+ KV  V PS++AAFVD G
Sbjct: 439 KRSMVVRERPGRTQIAVLEDDVLVEHYVAQKSQTSMVGNVYMGKVQNVLPSMEAAFVDIG 498

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 499 KGRNAVLYAGEVNWD 513


>gi|315093134|gb|EFT65110.1| S1 RNA binding domain protein [Propionibacterium acnes HL060PA1]
          Length = 800

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 423 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 481

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 482 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 539

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 540 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 599

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 600 PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 659

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 660 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 719

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 720 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 774



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 355 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 413

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 414 RGRNAVLYAGEVDWAKYGKEGEDK 437


>gi|239917521|ref|YP_002957079.1| ribonuclease, Rne/Rng family [Micrococcus luteus NCTC 2665]
 gi|239838728|gb|ACS30525.1| ribonuclease, Rne/Rng family [Micrococcus luteus NCTC 2665]
          Length = 1091

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 111/350 (31%), Positives = 191/350 (54%), Gaps = 10/350 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 296 GEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDSVGHKGARLTSQVSLPGRYLVYVPGG 355

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +    +  K       +P   GVI+RTA    ++ E++ D   L   W+
Sbjct: 356 SMTG-ISRKLPDVERSRLKK--ILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWE 412

Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
            ++E A  +      L+Y E +L  + +RD++ +D S ++V GE  +   + ++  + P 
Sbjct: 413 GIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWDNIEAYVTYVAPH 472

Query: 332 YARIVRQYEDPHPIFFR----SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
               +  +               ++ QL    + +V LPS G ++I++TEA+  +DVN+G
Sbjct: 473 LLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTG 532

Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           + T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E 
Sbjct: 533 KFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVEC 592

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           L +DR + QV  +++ GL++M+R+R+ + ++E  ++ C +C G G +   
Sbjct: 593 LGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGILIQD 642



 Score = 95.4 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KML+     +  ++ VL D  + E       +  + GN+YL KV  V PS++AAFVD G
Sbjct: 228 RKMLV-RQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 286

Query: 63  GNRHGFLPFLEIHPDYYQI 81
             R+  L   E++ D  Q+
Sbjct: 287 RGRNAVLYAGEVNWDAAQL 305


>gi|314923179|gb|EFS87010.1| S1 RNA binding domain protein [Propionibacterium acnes HL001PA1]
 gi|314966947|gb|EFT11046.1| S1 RNA binding domain protein [Propionibacterium acnes HL082PA2]
 gi|314981288|gb|EFT25382.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA3]
 gi|315091708|gb|EFT63684.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA4]
 gi|315103219|gb|EFT75195.1| S1 RNA binding domain protein [Propionibacterium acnes HL050PA2]
 gi|315107020|gb|EFT78996.1| S1 RNA binding domain protein [Propionibacterium acnes HL030PA1]
 gi|327327768|gb|EGE69544.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes
           HL103PA1]
          Length = 803

 Score =  200 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|169831609|ref|YP_001717591.1| ribonuclease [Candidatus Desulforudis audaxviator MP104C]
 gi|169638453|gb|ACA59959.1| ribonuclease, Rne/Rng family [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 416

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 116/330 (35%), Positives = 182/330 (55%), Gaps = 3/330 (0%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I++++   Q ++VQ+ K+  GNKG  VT  ++L G Y+VLMP  +    ISR+I +  +R
Sbjct: 88  IRDLLHPGQEVIVQVAKDPLGNKGPRVTMRVNLPGHYTVLMPTVNHVG-ISRRIEDESER 146

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           + L+E+        GMG I+RTA        +  D   L +LW ++++    + AP L+Y
Sbjct: 147 ERLREVVHRARPE-GMGAIVRTAARGIAAEVLADDIRELEKLWRDIQKREAGAAAPSLLY 205

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            E  L+ R IRDL+ ++I E +V            +   +    +    +ED   IF   
Sbjct: 206 RECGLLPRIIRDLFTEEI-ERLVLDSFTSYARSLTILDTVNPQLKSRVFWEDKPDIFEAY 264

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +  +++   Q +  L   GY+I +Q EAL  IDVN+GR T    +EDT  +TNLEAA E
Sbjct: 265 NVNQEINKALQRKTWLRCGGYLIFDQAEALTVIDVNTGRFTGRVDLEDTVYKTNLEAAVE 324

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQLRLR+L G+I++DFIDM  +++   V + L E +KKDR R  +  ++  GL+E++R
Sbjct: 325 IARQLRLRNLGGIIIIDFIDMSHEEHRNRVLEVLGEEIKKDRRRTHIMGLTRLGLVELTR 384

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
           +++  S+ E     C  C G G I+ Q   
Sbjct: 385 KKVHPSLAELLLTNCPQCGGTGKIQGQRKD 414



 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  + +I ++    TRV +L +    E+  E + +  + G+I+   V  V P ++AAFV+
Sbjct: 1  MLKREIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVN 60

Query: 61 YGGNRHGFLPFLEIHPD 77
           G +R+ FL   ++ P 
Sbjct: 61 VGLDRNAFLYVNDVLPQ 77


>gi|314968157|gb|EFT12256.1| S1 RNA binding domain protein [Propionibacterium acnes HL037PA1]
          Length = 803

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G+ G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGDGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|314987656|gb|EFT31747.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA2]
 gi|314990136|gb|EFT34227.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA3]
          Length = 803

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            V     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VVERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|315100973|gb|EFT72949.1| S1 RNA binding domain protein [Propionibacterium acnes HL046PA1]
          Length = 803

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|313833950|gb|EFS71664.1| S1 RNA binding domain protein [Propionibacterium acnes HL056PA1]
          Length = 802

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 425 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 483

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 484 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 541

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 542 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 601

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 602 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 661

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 662 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 721

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 722 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 776



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 357 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 415

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 416 RGRNAVLYAGEVDWAKYGKEGEDK 439


>gi|313764664|gb|EFS36028.1| S1 RNA binding domain protein [Propionibacterium acnes HL013PA1]
 gi|313772478|gb|EFS38444.1| S1 RNA binding domain protein [Propionibacterium acnes HL074PA1]
 gi|313807312|gb|EFS45799.1| S1 RNA binding domain protein [Propionibacterium acnes HL087PA2]
 gi|313809819|gb|EFS47540.1| S1 RNA binding domain protein [Propionibacterium acnes HL083PA1]
 gi|313815731|gb|EFS53445.1| S1 RNA binding domain protein [Propionibacterium acnes HL059PA1]
 gi|313818358|gb|EFS56072.1| S1 RNA binding domain protein [Propionibacterium acnes HL046PA2]
 gi|313825653|gb|EFS63367.1| S1 RNA binding domain protein [Propionibacterium acnes HL063PA1]
 gi|313827897|gb|EFS65611.1| S1 RNA binding domain protein [Propionibacterium acnes HL063PA2]
 gi|313830732|gb|EFS68446.1| S1 RNA binding domain protein [Propionibacterium acnes HL007PA1]
 gi|314915159|gb|EFS78990.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA4]
 gi|314918387|gb|EFS82218.1| S1 RNA binding domain protein [Propionibacterium acnes HL050PA1]
 gi|314919876|gb|EFS83707.1| S1 RNA binding domain protein [Propionibacterium acnes HL050PA3]
 gi|314931891|gb|EFS95722.1| S1 RNA binding domain protein [Propionibacterium acnes HL067PA1]
 gi|314955959|gb|EFT00357.1| S1 RNA binding domain protein [Propionibacterium acnes HL027PA1]
 gi|314958443|gb|EFT02546.1| S1 RNA binding domain protein [Propionibacterium acnes HL002PA1]
 gi|314960206|gb|EFT04308.1| S1 RNA binding domain protein [Propionibacterium acnes HL002PA2]
 gi|314973158|gb|EFT17254.1| S1 RNA binding domain protein [Propionibacterium acnes HL053PA1]
 gi|314976327|gb|EFT20422.1| S1 RNA binding domain protein [Propionibacterium acnes HL045PA1]
 gi|314978192|gb|EFT22286.1| S1 RNA binding domain protein [Propionibacterium acnes HL072PA2]
 gi|314983464|gb|EFT27556.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA1]
 gi|315080261|gb|EFT52237.1| S1 RNA binding domain protein [Propionibacterium acnes HL078PA1]
 gi|315084523|gb|EFT56499.1| S1 RNA binding domain protein [Propionibacterium acnes HL027PA2]
 gi|315085860|gb|EFT57836.1| S1 RNA binding domain protein [Propionibacterium acnes HL002PA3]
 gi|315088723|gb|EFT60699.1| S1 RNA binding domain protein [Propionibacterium acnes HL072PA1]
 gi|315096353|gb|EFT68329.1| S1 RNA binding domain protein [Propionibacterium acnes HL038PA1]
 gi|315098332|gb|EFT70308.1| S1 RNA binding domain protein [Propionibacterium acnes HL059PA2]
 gi|315108255|gb|EFT80231.1| S1 RNA binding domain protein [Propionibacterium acnes HL030PA2]
 gi|327325986|gb|EGE67776.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes
           HL096PA2]
 gi|327330687|gb|EGE72433.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes
           HL097PA1]
 gi|327332143|gb|EGE73880.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes
           HL096PA3]
 gi|327442763|gb|EGE89417.1| S1 RNA binding domain protein [Propionibacterium acnes HL013PA2]
 gi|327446134|gb|EGE92788.1| S1 RNA binding domain protein [Propionibacterium acnes HL043PA2]
 gi|327447887|gb|EGE94541.1| S1 RNA binding domain protein [Propionibacterium acnes HL043PA1]
 gi|327450986|gb|EGE97640.1| S1 RNA binding domain protein [Propionibacterium acnes HL087PA3]
 gi|327453665|gb|EGF00320.1| S1 RNA binding domain protein [Propionibacterium acnes HL083PA2]
 gi|328754995|gb|EGF68611.1| S1 RNA binding domain protein [Propionibacterium acnes HL025PA2]
 gi|328760515|gb|EGF74083.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes
           HL099PA1]
          Length = 803

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|188996908|ref|YP_001931159.1| ribonuclease, Rne/Rng family [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931975|gb|ACD66605.1| ribonuclease, Rne/Rng family [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 470

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/402 (27%), Positives = 199/402 (49%), Gaps = 12/402 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           + + I     +LVQ+ +     KGA ++  +SL G+Y VL+P +    +IS K  +  +R
Sbjct: 77  VCKNIDKGSSILVQVKRSPVSTKGAKLSCKISLPGKYLVLLPQSKGKISISSKYEDNDER 136

Query: 230 KNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             +KE  + L         G+I+RTA        I  DF++L+ LW+ +++      AP 
Sbjct: 137 NEIKERIKNLLHEINQENFGLIIRTAAKDAPDEAILEDFKFLIELWNQIQKDYNKKKAPS 196

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YEE       +RD        I           K  ++    +  ++    +    +F
Sbjct: 197 VIYEEPFKAFAILRDYAGSFSEIISDDVSILKLIKKFVLENFTNANIKMTPYRKRKESLF 256

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
           +   ++  ++ +      L S  Y++I +TEALV IDVNSG   ++  +E+TA + NLEA
Sbjct: 257 YEYELDKLINKILSPYAYLKSGSYLVIQETEALVVIDVNSGSCHKQKNLEETAFRINLEA 316

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
             EI RQ+RLRDL+G++V+DFIDM  +++  ++ ++LKE  KKD+  V++  ++  GLLE
Sbjct: 317 IPEIVRQIRLRDLSGIVVIDFIDMINQEHKEAIVERLKEEFKKDKRPVKIKGLTQLGLLE 376

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           +SR+++  S+++  +  C +C G GYI+SQ  V   + +++ +         II    S 
Sbjct: 377 LSRKKLEESLIKQLSDYCQHCYGRGYIKSQDVVIFELEKTINKLKPFAKMKIIINPKLSK 436

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
            V  LL   +             + +    ++    F +EK 
Sbjct: 437 AVDNLLENLKLK---------ELVEIEYNNKMQLDKFEVEKV 469



 Score = 61.5 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          +L DN   EL  E     +  G+IY  KV R   +++A FVD G ++  FLP  +I
Sbjct: 18 ILEDNIPVELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDIGEDKEAFLPKKDI 73


>gi|145223221|ref|YP_001133899.1| ribonuclease [Mycobacterium gilvum PYR-GCK]
 gi|315443679|ref|YP_004076558.1| ribonuclease, Rne/Rng family [Mycobacterium sp. Spyr1]
 gi|145215707|gb|ABP45111.1| ribonuclease, Rne/Rng family [Mycobacterium gilvum PYR-GCK]
 gi|315261982|gb|ADT98723.1| ribonuclease, Rne/Rng family [Mycobacterium sp. Spyr1]
          Length = 1016

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 119/359 (33%), Positives = 199/359 (55%), Gaps = 17/359 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    +       Q  I++ +K    ++VQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 445 GEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 504

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           S    ISRK+ +   ++   +      VP+  GVI+RTA     + +I+ D E L + W 
Sbjct: 505 SSTG-ISRKLPDTERQR--LKEILREVVPSNAGVIIRTASEGVKEDDIRTDVERLQKRWT 561

Query: 274 NVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
           ++   A       + A   +YEE +++ + IRDL+ +D S +IVSG++ ++   D++  +
Sbjct: 562 DIEAKAAEVTAKKAGAAVALYEEPDVLVKVIRDLFNEDFSNLIVSGDQAWKTIDDYVTAV 621

Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            P     + +YE             F    I+ QL      +V LPS G ++I++TEA+ 
Sbjct: 622 APELLPRITRYEPAGSPEAGTAPDVFAVHRIDEQLAKAMDRKVYLPSGGTLVIDRTEAMT 681

Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            +DVN+G+ T     +E T  + NLEAAEE  RQLRLRD+ G++V+DFIDM  + N   V
Sbjct: 682 VVDVNTGKFTGSGGNLEQTVTRNNLEAAEETVRQLRLRDIGGIVVIDFIDMVLESNRDLV 741

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            ++L E+L +DR R QV  +++ GL++++R+R+ + ++E+ +  CT+C G G +     
Sbjct: 742 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTTCTHCSGRGIMLHGDP 800



 Score = 99.7 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  V E    S  +  + GNIYL  V  V PS++AAFVD G  R+G L   E+
Sbjct: 388 TQIAVLEDGVVVEHFVTSAAQVSLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 447

Query: 75  HPD 77
           + +
Sbjct: 448 NWE 450


>gi|328753674|gb|EGF67290.1| S1 RNA binding domain protein [Propionibacterium acnes HL020PA1]
          Length = 803

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/355 (34%), Positives = 188/355 (52%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KG  +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGPLLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|313791713|gb|EFS39824.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA1]
 gi|313802203|gb|EFS43435.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA2]
 gi|313838530|gb|EFS76244.1| S1 RNA binding domain protein [Propionibacterium acnes HL086PA1]
 gi|314963012|gb|EFT07112.1| S1 RNA binding domain protein [Propionibacterium acnes HL082PA1]
 gi|315077657|gb|EFT49713.1| S1 RNA binding domain protein [Propionibacterium acnes HL053PA2]
 gi|327452935|gb|EGE99589.1| S1 RNA binding domain protein [Propionibacterium acnes HL092PA1]
          Length = 803

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLAECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.3 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|313837377|gb|EFS75091.1| S1 RNA binding domain protein [Propionibacterium acnes HL037PA2]
 gi|314927950|gb|EFS91781.1| S1 RNA binding domain protein [Propionibacterium acnes HL044PA1]
 gi|314971761|gb|EFT15859.1| S1 RNA binding domain protein [Propionibacterium acnes HL037PA3]
          Length = 800

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+  +K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 423 GEVDWAKYGKEGEDKRIEHALKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 481

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 482 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLIRDINRLKAQWE 539

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +   A NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 540 VIERKASNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPNDAYDTIKAYVDHVA 599

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +         D    F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 600 PEMVSRLTHWKHDDKDPFAEYRIDEQIAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 659

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IVVDFIDM    N   + ++L E L
Sbjct: 660 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLPTNRELLVRRLTECL 719

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 720 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEECEACGGRGYHRFDKPVDSQ 774



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V  S++AAF+D G
Sbjct: 355 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLSSMEAAFIDIG 413

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 414 RGRNAVLYAGEVDWAKYGKEGEDK 437


>gi|313820120|gb|EFS57834.1| S1 RNA binding domain protein [Propionibacterium acnes HL036PA1]
 gi|313823071|gb|EFS60785.1| S1 RNA binding domain protein [Propionibacterium acnes HL036PA2]
 gi|314925348|gb|EFS89179.1| S1 RNA binding domain protein [Propionibacterium acnes HL036PA3]
          Length = 803

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 94.3 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|313813141|gb|EFS50855.1| S1 RNA binding domain protein [Propionibacterium acnes HL025PA1]
          Length = 803

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G        K      I+ V+K+   +LVQ+ K+  G KGA +T+++S+ GR+ V  P  
Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                ISRK+ +   ++  K       +P+   VI+RTA    T+ ++ RD   L   W+
Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +     NS AP ++Y E +L  R IRDL+  D SE++++G  G  +A D +K  +   A
Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602

Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
             +              F    I+ Q+    + +V LPS G ++I++TEA+  IDVN+G+
Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662

Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
            T     +E T    NLEAAEEI RQLRLRD+ G+IV+DFIDM    N   + ++L E L
Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            +DR R QV  +++ GL++M+R++I + + E+ T+ C  C G GY R    V   
Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777



 Score = 93.9 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            KM++  S  + +++ VL D  + E   +        GNIYL KV  V PS++AAF+D G
Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDR 86
             R+  L   E+    Y     D+
Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440


>gi|152967401|ref|YP_001363185.1| ribonuclease, Rne/Rng family [Kineococcus radiotolerans SRS30216]
 gi|151361918|gb|ABS04921.1| ribonuclease, Rne/Rng family [Kineococcus radiotolerans SRS30216]
          Length = 1244

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/328 (33%), Positives = 185/328 (56%), Gaps = 8/328 (2%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G    D      +   I+  +K+   +LVQ+ K+  G+KGA +T+ +SL GRY V +P  
Sbjct: 802  GEVNWDAAGLEGQPRRIEAALKSGDPVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPRG 861

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            S    ISRK+ +    +  K       VP G GVI+RTA     + E+  D + L   W+
Sbjct: 862  SMTG-ISRKLPDTERARLKK--VLKQVVPEGAGVIVRTAAEGVAEEELAADVQRLQATWE 918

Query: 274  NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
             ++  A +  AP L++ E +L  R +RD++ +D +++++SG++ +   + ++  + P  A
Sbjct: 919  AIQAKASSKNAPVLLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWETVRGYVDDVAPDLA 978

Query: 334  RIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
              + +++        +F    I+ QL      +V LPS G ++I+ TEA+  +DVN+G+ 
Sbjct: 979  ERLERWDGGAGGAEDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPTEAMHVVDVNTGKF 1038

Query: 390  T-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
            T     +E+T  + NLEAAEEI RQLRLRD+ G+IV+DFIDM  + N   V ++L E L 
Sbjct: 1039 TGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLG 1098

Query: 449  KDRARVQVGAISNFGLLEMSRQRIRSSV 476
            +DR + QV  +++ GL++M+R+R    +
Sbjct: 1099 RDRTKHQVAEVTSLGLVQMTRKRTGQGL 1126



 Score = 90.8 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++     ++T++ VL D  + E       +  + GN+YL +V  V PS++AAF+D G
Sbjct: 733 ERVMVVRQQADKTQIGVLEDGILVEHYGAKLAQTTMVGNVYLGRVQNVLPSMEAAFIDVG 792

Query: 63  GNRHGFLPFLEIHPD 77
             R+  L   E++ D
Sbjct: 793 KGRNAVLYAGEVNWD 807


>gi|254424128|ref|ZP_05037846.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. PCC 7335]
 gi|196191617|gb|EDX86581.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. PCC 7335]
          Length = 785

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 147/564 (26%), Positives = 250/564 (44%), Gaps = 15/564 (2%)

Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
                  I       +V  I   + E    SI +A  ++  + ++      +  P K KR
Sbjct: 18  SEDQIQEIIVATGSHQVGDIYLGTVENILPSIDAAFINIGDSDKNGFMHVSDLGPLKLKR 77

Query: 167 Q-YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
               I E++  +Q +LVQI+KE  GNKG  +T  ++L GRY VLMP   KG  +SR+I N
Sbjct: 78  MAGSITELLAPQQKVLVQIMKEPTGNKGPRLTGKVTLPGRYLVLMP-YGKGVNLSRRIRN 136

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
             +R  L+     L  PAGMG+++RT      +  I  D E L R W+++++ A+ +  P
Sbjct: 137 EAERNRLRA-LGILVKPAGMGLLIRTEAEGVPEDAIIEDLESLQRSWEDIQQEAMATRPP 195

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV---RQYEDP 342
            L+  + + I++ +RD Y  D++ I+   E G +  K  +                + +P
Sbjct: 196 SLLNRDDDFIQKVLRDGYNDDVNRIVTDTESGLQRTKKHLTSWNNGRIPSNVLVDYHNEP 255

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
             +     +   +    +  V LPS GY+II  TEAL  IDVNSG  TR     +T L T
Sbjct: 256 THVLEYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWT 315

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           N EAA EIARQLRLR++AG+IVVDFIDM+  K+   V ++  ++++ D++R Q+  ++  
Sbjct: 316 NCEAAVEIARQLRLRNIAGVIVVDFIDMDSLKDKMQVLEQFGKAIRADKSRPQISQLTEL 375

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAG---YIRSQSSVALSILRSVEEYLLQYTAHNI 519
           GL+E++R+R   ++ E   + C+ C G G   ++  +     S L SV        +   
Sbjct: 376 GLVELTRKRQGQNIYELFGQPCSTCGGLGHLAHLPGEDPEKSSQLESVSSPRSAGYSSPS 435

Query: 520 IVHTHSDVVLYLLNQK----RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
              ++      L +      ++   E E     S N   G     +     +G+    L 
Sbjct: 436 QSFSNRPTARELRSSSSSSPQSEFQELELLNHPSYNDKNGRGGRRRRRRGAEGASSNRLS 495

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
            +G  +       +     E   +  +     + E     ++          +  +R  +
Sbjct: 496 RSGSPLPVTVDKGADRNGDERRRRRGSSRGSERVELERTGREAQQDRSQEAQLSDQREEQ 555

Query: 636 RRRRPATD--HHDAGVVSDVSSIQ 657
             +    +    +  V +D    +
Sbjct: 556 NGKPANAEVGSRNKRVRNDRRKSE 579



 Score = 80.8 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  V  +++++E+   +       G+IYL  V  + PS+ AAF+
Sbjct: 1  MSKQIVI----AEQHRIAAVFSEDQIQEIIVATGSH--QVGDIYLGTVENILPSIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G  +++GF+   ++ P
Sbjct: 55 NIGDSDKNGFMHVSDLGP 72


>gi|300780654|ref|ZP_07090509.1| ribonuclease E [Corynebacterium genitalium ATCC 33030]
 gi|300533640|gb|EFK54700.1| ribonuclease E [Corynebacterium genitalium ATCC 33030]
          Length = 1040

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 147/611 (24%), Positives = 253/611 (41%), Gaps = 45/611 (7%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   I++ +K+   +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 414  GEVDWKAAGLGGRARRIEQALKSGDQVLVQVTKDPVGHKGARLTTQISLAGRYLVYVPG- 472

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+  P  ++ LK+I   +    G G I+RTA     +  I  D + L   W 
Sbjct: 473  GHSAGISRKLPAPERKR-LKDILVKVVPGKG-GAIIRTAAEGVPEEAIAADVKRLHTQWQ 530

Query: 274  -----NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
                 + +E       P  +YEE  L+ + +RDL+ +D  +++V G+K +    ++++ +
Sbjct: 531  TIRQQSEQEKKSKGSKPVTLYEEPRLLVKVVRDLFNEDFQQLVVDGKKPWNVVSNYVESV 590

Query: 329  MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P  A  +  ++         F    ++ Q+       V LPS G ++I++TEA+  IDV
Sbjct: 591  APDLADRLELFDRGDHDGQDVFEVYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVIDV 650

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T    N+EAAEEI RQLRLRD+ G+I++DFIDM   +N   V ++ 
Sbjct: 651  NTGKFTGSGGSLEETVTSNNMEAAEEIVRQLRLRDIGGMIIIDFIDMILPENQELVLRRF 710

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL-- 501
            KE+L +DR R QV  +++ GL++++R+R+ + ++E+ +  C  C G G + S   V+   
Sbjct: 711  KEALGRDRTRHQVSEVTSLGLVQLTRKRLGTGLVETFSTKCECCDGRGIVLSDDPVSATD 770

Query: 502  -------SILRSVEEYLLQYTAHNIIVH------------THSDVVLYLLNQKRATIVEY 542
                      R   +   +  A +   H               +      N     + + 
Sbjct: 771  SRDDASGRGGRRGNQSRRRKPAQDPAGHPAALAMQGRDDDPSQESGRDTENDVEKDVEQL 830

Query: 543  EARFGVSINVVIGI-ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            E     ++ +     E  D     +                   +  S         +  
Sbjct: 831  EELAD-AVVITNDPVEPIDTSDTSDTDDSSDEDRPKRRSSRRRGRRGSGRGKGRPQQETT 889

Query: 602  ALLPIPKSESLEDIQDNIVS----EESTGVIRKRRRRRRRRR--PATDHHDAGVVSDVSS 655
                 P+  S  D +D        EE+     +  RR+R  R    +DH       + + 
Sbjct: 890  DAQDTPEDSSGRDDEDASEPAKTYEEAVEEFERSPRRKRNTRGNSTSDHRPRREDYEQAE 949

Query: 656  IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPI 712
             ++   D      +P         E G+ G       +     T   P  E      DP 
Sbjct: 950  AEDDQPDDSAESAQPRTSDPGRAPERGSRGRRRATRRTTAGRDTARQPVNEKPMQRQDPA 1009

Query: 713  VKKTRWWKRRK 723
             K +     ++
Sbjct: 1010 KKSSGKAAPQQ 1020



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T V VL D  + E   +S+    + GNIYL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 357 TEVGVLEDGLLVEHFVDSDDSASMIGNIYLGRVQNVLPSMEAAFIDIGQGRNGVLYAGEV 416


>gi|310286793|ref|YP_003938051.1| ribonuclease, Rne/Rng family [Bifidobacterium bifidum S17]
 gi|309250729|gb|ADO52477.1| ribonuclease, Rne/Rng family [Bifidobacterium bifidum S17]
          Length = 960

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 550 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 609

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA     +  I +D E L+R W+
Sbjct: 610 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWE 666

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  +  E+IV G+K Y   ++++  + P
Sbjct: 667 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAP 726

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 727 DLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 786

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   R   +E+T  + NLEAAEEIARQLRLRD+ G++++DF+DM    N   V ++L E
Sbjct: 787 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 846

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  C G G+I       
Sbjct: 847 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPTV 901



 Score = 92.0 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           N++++       T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G
Sbjct: 481 NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 540

Query: 63  GNRHGFLPFLEIHPD 77
            +R+G L   E++ D
Sbjct: 541 QSRNGVLYAGEVNWD 555


>gi|311063689|ref|YP_003970414.1| ribonuclease G [Bifidobacterium bifidum PRL2010]
 gi|310866008|gb|ADP35377.1| Rne Ribonuclease G [Bifidobacterium bifidum PRL2010]
          Length = 955

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 545 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 604

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA     +  I +D E L+R W+
Sbjct: 605 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWE 661

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  +  E+IV G+K Y   ++++  + P
Sbjct: 662 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAP 721

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 722 DLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 781

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   R   +E+T  + NLEAAEEIARQLRLRD+ G++++DF+DM    N   V ++L E
Sbjct: 782 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 841

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  C G G+I       
Sbjct: 842 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPTV 896



 Score = 92.0 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           N++++       T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G
Sbjct: 476 NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 535

Query: 63  GNRHGFLPFLEIHPD 77
            +R+G L   E++ D
Sbjct: 536 QSRNGVLYAGEVNWD 550


>gi|227504028|ref|ZP_03934077.1| ribonuclease E [Corynebacterium striatum ATCC 6940]
 gi|227199358|gb|EEI79406.1| ribonuclease E [Corynebacterium striatum ATCC 6940]
          Length = 1132

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 138/589 (23%), Positives = 241/589 (40%), Gaps = 35/589 (5%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   I+  +K+   +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 417  GEVDWRAAGLGGRGRKIENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPG- 475

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++   +      +P   G I+RTA  + ++  I  D   L  LW+
Sbjct: 476  GRSAGISRKLPVPERKR--LKGILERVIPGDGGAIIRTAAENVSEEAIATDVNRLHNLWE 533

Query: 274  NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            ++ + + +  +        +YEE +L+ + +RDL+ +D +++IV G + Y     ++  +
Sbjct: 534  DITKRSDHEKSTKGAKPVTLYEEPDLLVKVVRDLFNEDFTKLIVDGRRSYNTVSAYVDSM 593

Query: 329  MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
                A  V +Y+         F    I+ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 594  AHDLADRVEKYDAREHGGEDAFVTYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 653

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 654  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRL 713

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-----QSS 498
            KE+L +DR R QV  +++ GL++M+R+R+ + ++E+ +  C  C G G I       +  
Sbjct: 714  KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLIETFSTECEACHGRGIIIHEYPVDEEQ 773

Query: 499  VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK---------RATIVEYEARFGVS 549
               +          +          H   V    +++                E +  + 
Sbjct: 774  ENDAHEHKGRRPRRERRKPEHDPQQHPAAVAMHRHEEAEEARAAASNDAESHVEQKTSIE 833

Query: 550  -----INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                 I V    +   +    +     +          S+ Q     K  +    D A +
Sbjct: 834  DLVAGIIVNDDKDEKREHN--DSQENNRKQRRGRRSRRSNRQEGHTYKEQQDSADDIARI 891

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
                +++  ++ D             +   +   +      + G        +     + 
Sbjct: 892  GYAAADNAAELDDVAEFNSYVADEEPQVEAQVENQEKEQRENEGAKRSRGRGRRRSARTN 951

Query: 665  D-MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                 EP         +       E          T     S+    P 
Sbjct: 952  APQKSEPRKSEPRKSEQTYEEAVAEFEASPRRKRRTRGNSRSDHRPQPQ 1000



 Score = 83.9 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    +E +  + GNIYL +V  V PS++AAF+D G  R+G L   E+
Sbjct: 360 TQVGVLEDDLLVEHFVTTEAQASLIGNIYLGRVQNVLPSMEAAFIDIGQGRNGVLYAGEV 419


>gi|296534857|ref|ZP_06897191.1| ribonuclease E [Roseomonas cervicalis ATCC 49957]
 gi|296264815|gb|EFH11106.1| ribonuclease E [Roseomonas cervicalis ATCC 49957]
          Length = 159

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/147 (50%), Positives = 89/147 (60%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDASH EETRVVVL  NR+EE D E+E+K+ +KGNIYLAKV RVEPSLQAAFV+
Sbjct: 1   MTKRMLIDASHAEETRVVVLDGNRLEEFDIETENKRPLKGNIYLAKVVRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DR+ LL        D E         D  +     +
Sbjct: 61  YGGNRHGFLAFGEIHPDYYQIPVADRERLLALQAEESQDEEEDEVSEADADAMVAAIERM 120

Query: 121 EEVAPIANFSQETEEESIISANNDVVS 147
            +     +        S   A+ +  S
Sbjct: 121 ADADEAGDAPDGAAPRSQAMASGESRS 147


>gi|224282348|ref|ZP_03645670.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171]
 gi|313139492|ref|ZP_07801685.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171]
 gi|313132002|gb|EFR49619.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171]
          Length = 952

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 542 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 601

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA     +  I +D E L+R W+
Sbjct: 602 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWE 658

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            +        +   P L+  E ++  R +RD++  +  E+IV G+K Y   ++++  + P
Sbjct: 659 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAP 718

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 719 DLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 778

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   R   +E+T  + NLEAAEEIARQLRLRD+ G++++DF+DM    N   V ++L E
Sbjct: 779 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 838

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  C G G+I       
Sbjct: 839 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPTV 893



 Score = 92.0 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           N++++       T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G
Sbjct: 473 NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 532

Query: 63  GNRHGFLPFLEIHPD 77
            +R+G L   E++ D
Sbjct: 533 QSRNGVLYAGEVNWD 547


>gi|289548800|ref|YP_003473788.1| ribonuclease, Rne/Rng family [Thermocrinis albus DSM 14484]
 gi|289182417|gb|ADC89661.1| ribonuclease, Rne/Rng family [Thermocrinis albus DSM 14484]
          Length = 453

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 19/395 (4%)

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
            +K    LLVQ V+EE G KG  +T  + + G+Y V  P+  +    S+           
Sbjct: 74  QVKVGDTLLVQAVREEVGQKGVRLTDKIRIPGKYIVYFPSLGEIRCSSKLDKEG----RC 129

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           + ++       G GVI+RT     ++ E+ ++   L  L+  ++        P +V EE 
Sbjct: 130 RWVSVLSPHLEGEGVIVRTGSVYASEEEVLQELAQLRNLYRELQNRVKRLKKPKMVLEEY 189

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
              KR IRD +  ++ EI       + +   F+    P          DP P+  R  I 
Sbjct: 190 PCYKRFIRDHWH-ELEEIYCDDPVLWNDIASFLDSFHPPLLERSVYVRDPTPLINRYHIR 248

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
                L    V L S GY++I +TEA+  IDVNSG     +  E++AL+TNLEAA+EIA+
Sbjct: 249 ELFRRLFSKYVWLKSGGYIVIEETEAMTVIDVNSGEP-CGNSQEESALRTNLEAAKEIAK 307

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           Q+ LR+L G+I+VDFIDM+  +N  +V K LKE+  +D   VQ    +  GL EM R++ 
Sbjct: 308 QVILRNLGGIIIVDFIDMKRPENREAVTKALKEAFGEDGCNVQFYGFTRLGLFEMVRRKT 367

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           + S     +  C  C G+G I++++     + + ++  +       +             
Sbjct: 368 KESFPHLLSSSCPVCGGSGRIKAENLFLFELEKDLKSVVASRMRVRVRP----------- 416

Query: 533 NQKRATIVEYEARFGVS-INVVIGIELADKLFYIE 566
            ++   + +   R GV    V    ++    + +E
Sbjct: 417 -ERSKEVEKLLERLGVRSAEVEATEDVDYNDYEVE 450



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 1  MANKMLIDASHVEETRVV---VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAA 57
          MA K+LI +S     R V   +L    V ++D E     +I G+I+  KV RV   L+ A
Sbjct: 1  MAKKLLILSSD----RYVFAFLLEGFDVVKMDMEDRKAPRILGSIFKGKVLRVVKGLEGA 56

Query: 58 FVDYGGNRHGFLPFLEIH 75
          FVD G  +  +LP  ++ 
Sbjct: 57 FVDIGLGKEAYLPLKDLQ 74


>gi|289676060|ref|ZP_06496950.1| ribonuclease G [Pseudomonas syringae pv. syringae FF5]
          Length = 299

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 162/296 (54%)

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           RLWD + E       P ++YE+  L  R +RDL    I +I +   + +++   F+  LM
Sbjct: 1   RLWDQIGEQIKTVSPPTVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELM 60

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
           P  A  +  Y    PIF   G+E ++    + +V L S GY++I+  EA+ +IDVN+G  
Sbjct: 61  PEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAF 120

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                +E+T  +TNLEAA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++
Sbjct: 121 VGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLER 180

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           D A+  +  I+  GL++M+R+R R S+ +   + C  C G G +++  ++   I R +  
Sbjct: 181 DHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILR 240

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
               Y A    V  +  VV  LL+++   + E E+  G +I   +    + + + +
Sbjct: 241 EARAYQAVGYRVLANQRVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 296


>gi|126697030|ref|YP_001091916.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9301]
 gi|126544073|gb|ABO18315.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. MIT 9301]
          Length = 602

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 130/572 (22%), Positives = 240/572 (41%), Gaps = 10/572 (1%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180
           ++  I   + E     I +A  ++  + ++      +  P + K+  + I E+++ +Q +
Sbjct: 33  QIGDIFLGTVENVLPGIDAAFINIGESDKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE  G+KG  +T  +S+ G+Y +L P   +G  ISRK  N    +N  +    L 
Sbjct: 93  LVQVIKEPTGSKGPRLTGSISIPGKYMILQP-YGQGVNISRK-INTETERNRLKALGVLI 150

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   G++ RT      +  +  D E +++ W+N+ +++  S  P+LV  + +   + +R
Sbjct: 151 KPPSTGLLFRTEAEKIKEELLIEDLEQIIQQWENILKVSEASHPPNLVKRDEDFSLKILR 210

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D   +    II+  +     AKD++K                  +     I+  + +  Q
Sbjct: 211 DHIKESTKSIIIDSKFSVARAKDYLKNYESDINIEFHDNNSSPHVLDEYKIKKTIQTALQ 270

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY+II  TEAL  IDVNSG  TR      T L TN EAA EI+RQ++LR++ 
Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDME +++   + +    ++K D AR Q+  ++  GL+E++R+R   ++ E  
Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-----TAHNIIVHTHSDVVLYLLNQK 535
            K C+ C G G++ +  +  +S L+   +           + NI     +D    ++N++
Sbjct: 391 GKKCSTCDGTGHVENILNQEISNLKIKNDENKFNQSDNLKSQNIYTSQSTDEQEKIINKE 450

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
                +                L       +    V                P      E
Sbjct: 451 LLNSKDLSKENSSYKKENDNDNLNQSNSKEKNTITVDLTNEEKIVFSQLGINPLIKLGKE 510

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
            +  +  +     ++  E   D     +      K    +   +   +       +  + 
Sbjct: 511 YLTSNNFVRLKDSNKEKEKTLDKKTKSKQIKKSSKSGEEKI--QITIEDKANSKDNSTNK 568

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
           I  VI       +E +D   +   +      +
Sbjct: 569 INEVIFTEEKDEIEATDDLKNARKKRRRSSAS 600



 Score = 72.7 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  +L D+RV+EL           G+I+L  V  V P + AAF+
Sbjct: 1  MSQQIII----AEQARIAALLTDDRVDELIV--AQGHYQIGDIFLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G  +++GF+   ++ P
Sbjct: 55 NIGESDKNGFIHVSDLGP 72


>gi|226311431|ref|YP_002771325.1| ribonuclease G [Brevibacillus brevis NBRC 100599]
 gi|226094379|dbj|BAH42821.1| putative ribonuclease G [Brevibacillus brevis NBRC 100599]
          Length = 491

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 113/401 (28%), Positives = 190/401 (47%), Gaps = 8/401 (1%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           +  I E +   Q +LVQ+ KE    K   +T  +SL GRY V +P         +   + 
Sbjct: 82  KPNIAERVHVGQKVLVQVSKEAMEMKAPKITMRISLQGRYLVYLPTEESISLSRKISDDT 141

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             ++   +      V  G G ILRT  A   +  + R+  YL   W ++R  A    +  
Sbjct: 142 KRKR--LQQVISSTVEQGEGCILRTEAAEAEEQTLIRELTYLRNRWQDMRRTAEGLRSTG 199

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
            ++++  LI+ A+RD     + E++V G   +++ K  +    P     +R Y+   P+F
Sbjct: 200 RIFQDAELIEVALRDGLANGMDELLVEGAATHQQVKAALAAFAPEVQEKLRWYQGKQPLF 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE--DTALQTNL 404
              G+E +L      +V L S G ++I++TEA+  IDVN+G  T     +       TNL
Sbjct: 260 DYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMTVIDVNTGSFTGAGGQQREQAVTATNL 319

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EA  EIARQLRLRD+ G++++DFIDM+E+ N   V  +LK+ L KD     V  +++ GL
Sbjct: 320 EAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKERVISRLKQELAKDPVPSTVLGMTSLGL 379

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R+R+S++E  T+ C  C G G +     +   +   V        A   +V   
Sbjct: 380 VEMTRKRVRASLMERLTEPCEACAGRGRVWRVDELLRRLYVEVTALAKSQDAEAALVDMP 439

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             ++  +   ++A  V +       +       ++   F I
Sbjct: 440 PRLLDMIEAWEKAEAVTWPVHVYKRLV----PSMSPDEFRI 476



 Score = 72.7 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 33/66 (50%)

Query: 8  DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHG 67
           ++     R+  + + +++E   +        G+IY  ++  V+P +Q+AFVD G  ++ 
Sbjct: 6  ISTQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDIGTGQNA 65

Query: 68 FLPFLE 73
          +L   +
Sbjct: 66 YLYVDD 71


>gi|213693152|ref|YP_002323738.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524613|gb|ACJ53360.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459332|dbj|BAJ69953.1| ribonuclease G [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 977

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 498 DRLMVVREKEQHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 557

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 558 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 617

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 618 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 674

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 675 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYGRI 734

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 735 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 794

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 795 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 854

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 855 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 914

Query: 497 SSVA 500
               
Sbjct: 915 QPTV 918



 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 510 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 569

Query: 75  HPD 77
           + D
Sbjct: 570 NWD 572


>gi|23465843|ref|NP_696446.1| ribonuclease G [Bifidobacterium longum NCC2705]
 gi|23326541|gb|AAN25082.1| ribonuclease G [Bifidobacterium longum NCC2705]
          Length = 1003

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 524 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 583

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 584 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 643

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 644 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 700

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 701 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 760

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 761 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 820

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 821 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 880

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 881 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 940

Query: 497 SSVA 500
               
Sbjct: 941 QPTV 944



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 536 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 595

Query: 75  HPD 77
           + D
Sbjct: 596 NWD 598


>gi|119025257|ref|YP_909102.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703]
 gi|118764841|dbj|BAF39020.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703]
          Length = 937

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 121/424 (28%), Positives = 216/424 (50%), Gaps = 13/424 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           + L+      +    +V +D    +  + +   +  V  I     +    S+ +A  D+ 
Sbjct: 453 ERLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 512

Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
                V   G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 513 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 572

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        +   +       P  MGVI+RTA    ++  I +D
Sbjct: 573 RFLVLVPSGGMTGVSRKL---SERERARLKNIVSKIAPKDMGVIIRTAAEGASEEAITKD 629

Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G++ Y   
Sbjct: 630 LENLVRQWERITAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERI 689

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 690 EEYLDTMAPDLKDKLEKWDPAEHDGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 749

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   R   +E+T  + NLEAAEEIARQLRLRD+ G++++DF+DM    N 
Sbjct: 750 AMTTIDVNTGRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANR 809

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 810 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 869

Query: 497 SSVA 500
               
Sbjct: 870 EPTV 873



 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 465 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 524

Query: 75  HPD 77
           + D
Sbjct: 525 NWD 527


>gi|255325498|ref|ZP_05366600.1| ribonuclease E [Corynebacterium tuberculostearicum SK141]
 gi|255297436|gb|EET76751.1| ribonuclease E [Corynebacterium tuberculostearicum SK141]
          Length = 1290

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 138/580 (23%), Positives = 235/580 (40%), Gaps = 26/580 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G       K   R   ++  +K+   +LVQ+ K+  G+KGA +TT +SLAGRY V +P  
Sbjct: 480  GEIDWRKTKLHGRARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPG- 538

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++   +   G  VP   G I+RTA  +  +  I  D   L   W+
Sbjct: 539  GRSAGISRKLPAPERKR--LKDILGRVVPGDGGAIIRTAAENVPEEAIATDVNRLHSRWE 596

Query: 274  N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +      +E +     P  +YEE N++ + +RDL+ +D +E+IV G++ +   + ++  +
Sbjct: 597  DIVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSM 656

Query: 329  MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P  A  V +Y          F    I+ QL      +V LPS G ++I++TEA+  IDV
Sbjct: 657  APDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 716

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 717  NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 776

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499
            KE+L +DR R QV  +++ GL++M+R+R+ + ++E+ +  C  C G G I        + 
Sbjct: 777  KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECECCNGRGIIIHQYPVDEAE 836

Query: 500  ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG--IE 557
                 +        +   +     H   V       +  + +                  
Sbjct: 837  DDQRSKHSGRKSKAHKKQHHDPQQHPTAVAMH----KHELDDAPESSSKPKRFKKTQAPV 892

Query: 558  LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQ 616
               +     + S   +L +    V  D + P+      E    D                
Sbjct: 893  YGTESEEAARESAKTSLEDLVANVVVDERGPAQSHAGSEEHSGDHDRSKERGRGRGRRRA 952

Query: 617  DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                  E + +             + +  +       +      D        P      
Sbjct: 953  RKRTQTEVSDIEAIAYAAADNAAESDEVQEFNSYVPDADTD--ADSGAVAQAHPGAAARS 1010

Query: 677  NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +        +           +     ++ +    KT
Sbjct: 1011 KRGKKPRRATRRSKVTREAVGGEQKAPEKKAAPEKATGKT 1050



 Score = 87.3 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V VL D+ + E    +E +  + GNIYL +V  V PS++AAFVD G  R+G L   EI
Sbjct: 423 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 482


>gi|123966914|ref|YP_001011995.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9515]
 gi|123201280|gb|ABM72888.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. MIT 9515]
          Length = 608

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 127/525 (24%), Positives = 227/525 (43%), Gaps = 14/525 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ +Q +LVQ++KE  GNKG  +T  +SL G+Y +L P   +G  ISRK  N    
Sbjct: 82  ITELLEPKQKVLVQVMKEPTGNKGPRLTGNISLPGKYLILQPF-GQGVNISRK-INTDTE 139

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           ++       L  P   G++ RT      +  +  D E L++ WD V +++     P+L+ 
Sbjct: 140 RSRLRALGVLIKPPSTGLLFRTEAEKIKEELLIEDLENLIQQWDQVLKISETCQPPNLIN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + +   + +RD      S++++  +    +AKDF+     +   ++   +    I  + 
Sbjct: 200 RDEDFSLKILRDCIKASTSKVVIDNKVALEKAKDFLINNDSNVDLVLHNNDINEHILEKY 259

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            I   +    +  V LPS GY+II  TEAL  IDVNSG  TR      T L TN EAA E
Sbjct: 260 QINKTIQKALEPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVE 319

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I+RQ++LR++ G++V+DFIDME +++   + ++   ++K D AR Q+  ++  GL+E++R
Sbjct: 320 ISRQMKLRNIGGVLVIDFIDMESRRDQFQLLEQFTLAIKDDSARPQIAELTELGLVELTR 379

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R   ++ E   K C  C G G+I+S  +   S          + +  N    T  +   
Sbjct: 380 KRQGQNIYELFGKKCNACNGLGHIKSLPNYQNSNS-ETNHSAKKSSRLNNTKFTDLEPSE 438

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
            + NQ++    E               ++ +K     K       +   H          
Sbjct: 439 VIENQEKIVKKEL-----------PNSKILNKDDDPAKQKENDNEIVNTHNSKEKKVITV 487

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
               +E +   +  +        + + +N +         ++    ++ + A        
Sbjct: 488 ELSEVEKIVYSQLGINPLIKLGKQYLTNNHLVRLENSNNNEKELSLQKNKKAKTKVSNKK 547

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
            +  SS  N I+ S     E  +I + + L        E      
Sbjct: 548 TNKKSSTSNSIEKSEVEVNESKEINHESKLPKITTANEEVEITDE 592



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  +L D+RV+EL       +   G+I+L  V  V P + AAF+
Sbjct: 1  MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
            G   ++GF+   ++ P
Sbjct: 55 HIGESEKNGFIHVSDLGP 72


>gi|291516541|emb|CBK70157.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. longum
           F8]
          Length = 1011

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 532 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 591

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 592 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 651

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 652 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 708

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 709 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 768

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 769 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 828

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 829 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 888

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 889 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 948

Query: 497 SSVA 500
               
Sbjct: 949 QPTV 952



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 544 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 603

Query: 75  HPD 77
           + D
Sbjct: 604 NWD 606


>gi|312133798|ref|YP_004001137.1| cafa [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773082|gb|ADQ02570.1| CafA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1022

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 899

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 900 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 959

Query: 497 SSVA 500
               
Sbjct: 960 QPTV 963



 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614

Query: 75  HPD 77
           + D
Sbjct: 615 NWD 617


>gi|326391428|ref|ZP_08212964.1| ribonuclease, Rne/Rng family [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992507|gb|EGD50963.1| ribonuclease, Rne/Rng family [Thermoanaerobacter ethanolicus JW
           200]
          Length = 477

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 126/400 (31%), Positives = 215/400 (53%), Gaps = 7/400 (1%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I +V+K  Q ++VQ+ KE  G K   VT  +SL G+Y VLMPN        R     
Sbjct: 83  PKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYVGISHRIEEEG 142

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             ++   +       P GMG+I+RTA    T+ +++ D + L+RL++ +++   N+  P 
Sbjct: 143 ERKR--LQEIVKELKPDGMGIIVRTAALEATEQQMREDLDELIRLYEKIQKDFQNAPLPS 200

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y+E +   + +RDL   ++ EI+V+ ++ Y   K ++K +      +     +   + 
Sbjct: 201 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLM 257

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G + Q++ L + +V L S G+VII+QTEAL  IDVN+G+   +  +E+T  +TNLEA
Sbjct: 258 GIYGADFQVEKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 317

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEIA QL+LRD+ G+I++DFIDM+ +   + + +  K+ L+KDR +  V   +  GL+E
Sbjct: 318 AEEIALQLKLRDIGGIIIIDFIDMKNENFRKDLLEFFKKELQKDRTKCSVLGYTQLGLVE 377

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R+RS V     + C  C+G G + S   +   +  ++E  L       I +  +  
Sbjct: 378 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYKRLRNNIERVLRHIKVRKIYIKGNDK 437

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           VV   +  ++  +  Y+ +F V + VV+        F IE
Sbjct: 438 VVK--IAAEKEIVKFYKEKFNVDLEVVVDNNKKYGHFEIE 475



 Score = 93.5 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++++D      +++ +L + +++E   E    K I GNIY  K+  V   +QAAFVD G
Sbjct: 5  KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63

Query: 63 GNRHGFLPFLE 73
            ++ FL F +
Sbjct: 64 IGKNAFL-FSD 73


>gi|296454938|ref|YP_003662082.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184370|gb|ADH01252.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 1051

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 572 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 631

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 632 QSRNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 691

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 692 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 748

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 749 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 808

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 809 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 868

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 869 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 928

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 929 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 988

Query: 497 SSVA 500
               
Sbjct: 989 QPTV 992



 Score = 95.4 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G +R+G L   E+
Sbjct: 584 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQSRNGVLYAGEV 643

Query: 75  HPD 77
           + D
Sbjct: 644 NWD 646


>gi|322690004|ref|YP_004209738.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F]
 gi|320461340|dbj|BAJ71960.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F]
          Length = 1014

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 535 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 594

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 595 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 654

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 655 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 711

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 712 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 771

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 772 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 831

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 832 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 891

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 892 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 951

Query: 497 SSVA 500
               
Sbjct: 952 QPTV 955



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 547 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 606

Query: 75  HPD 77
           + D
Sbjct: 607 NWD 609


>gi|328754410|gb|EGF68026.1| ribonuclease, Rne/Rng family [Propionibacterium acnes HL087PA1]
          Length = 339

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 171/316 (54%), Gaps = 9/316 (2%)

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           GA + +++S+ GR+ V  P       ISRK+ +   ++  K       +P+   VI+RTA
Sbjct: 1   GARLPSHISVPGRFVVYSPG-GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTA 57

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
               T+ ++ RD   L   W+ +     NS AP ++Y E +L  R IRDL+  D SE+++
Sbjct: 58  AEGATEEDLVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVI 117

Query: 313 SGEKGYREAKDFMKLLMPSYARIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
           +G  G  +A D +K  +   A  +              F    I+ Q+    + +V LPS
Sbjct: 118 AGNGGPDDAYDTIKAYVDHVAPEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPS 177

Query: 368 RGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
            G ++I++TEA+  IDVN+G+ T     +E T    NLEAAEEI RQLRLRD+ G+IV+D
Sbjct: 178 GGSLVIDRTEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVID 237

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDM    N   + ++L E L +DR R QV  +++ GL++M+R++I + + E+ T+ C  
Sbjct: 238 FIDMVLPTNRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEA 297

Query: 487 CKGAGYIRSQSSVALS 502
           C G GY R    V   
Sbjct: 298 CGGRGYRRFDKPVDSQ 313


>gi|239620892|ref|ZP_04663923.1| ribonuclease G [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239516153|gb|EEQ56020.1| ribonuclease G [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 1023

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 544 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 603

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 604 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 663

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 664 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 720

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 721 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 780

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 781 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 840

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 841 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 900

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 901 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 960

Query: 497 SSVA 500
               
Sbjct: 961 QPTV 964



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 556 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 615

Query: 75  HPD 77
           + D
Sbjct: 616 NWD 618


>gi|189440477|ref|YP_001955558.1| ribonuclese G and E [Bifidobacterium longum DJO10A]
 gi|189428912|gb|ACD99060.1| Ribonuclese G and E [Bifidobacterium longum DJO10A]
          Length = 1022

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 899

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 900 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 959

Query: 497 SSVA 500
               
Sbjct: 960 QPTV 963



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614

Query: 75  HPD 77
           + D
Sbjct: 615 NWD 617


>gi|322691938|ref|YP_004221508.1| ribonuclease G [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456794|dbj|BAJ67416.1| ribonuclease G [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 1022

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 899

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 900 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 959

Query: 497 SSVA 500
               
Sbjct: 960 QPTV 963



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614

Query: 75  HPD 77
           + D
Sbjct: 615 NWD 617


>gi|317482959|ref|ZP_07941963.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915566|gb|EFV36984.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1003

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 524 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 583

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 584 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 643

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 644 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 700

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 701 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 760

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 761 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 820

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 821 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 880

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 881 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 940

Query: 497 SSVA 500
               
Sbjct: 941 QPTV 944



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 536 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 595

Query: 75  HPD 77
           + D
Sbjct: 596 NWD 598


>gi|300914782|ref|ZP_07132098.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X561]
 gi|307723984|ref|YP_003903735.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X513]
 gi|320116264|ref|YP_004186423.1| ribonuclease, Rne/Rng family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|300889717|gb|EFK84863.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X561]
 gi|307581045|gb|ADN54444.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X513]
 gi|319929355|gb|ADV80040.1| ribonuclease, Rne/Rng family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 477

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 215/400 (53%), Gaps = 7/400 (1%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I +V+K  Q ++VQ+ KE  G K   VT  +SL G+Y VLMPN        R     
Sbjct: 83  PKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYIGISHRIEEEV 142

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             ++   +       P G+G+I+RTA    T+ +I+ D E L+RL++ +++   N+  P 
Sbjct: 143 ERKR--LQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELIRLYEKIQKDFQNAPLPS 200

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y+E +   + +RDL   ++ EI+V+ ++ Y   K ++K +      +     +   + 
Sbjct: 201 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLL 257

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G + Q+D L + +V L S G+VII+QTEAL  IDVN+G+   +  +E+T  +TNLEA
Sbjct: 258 GIYGADFQVDKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 317

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEIA QL+LRD+ G+I++DFIDM+ +   R + +  K  L+KDR +  V   +  GL+E
Sbjct: 318 AEEIALQLKLRDIGGIIIIDFIDMKNENFKRDLLEFFKRELQKDRTKCTVLGYTQLGLVE 377

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R+RS V     + C  C+G G + S   +   +  ++E  L    A  I +  +  
Sbjct: 378 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYRRLRNNIERVLRHVNARKIYIKGNDK 437

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           VV   +  ++  I  Y+ +F V + +V+        F IE
Sbjct: 438 VVK--IASEKGIIKFYKEKFNVDLELVVDNNKKYGHFEIE 475



 Score = 98.5 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 11/258 (4%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++D      +++ +L + +++E   E    K I GNIY  K+  V   +QAAFVD G
Sbjct: 5   KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI----AQTDSEAVADDVTHGDVTIPNDH 118
             ++ FL F ++      +P S  Q L     I    ++         VT          
Sbjct: 64  IGKNAFLFFDDVLFQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYV 123

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
            L         S   EEE       ++V  ++    G           +  I+E ++   
Sbjct: 124 VLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELI 183

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
            L  +I K+ +     ++             + +    E     + +  + +N+K   + 
Sbjct: 184 RLYEKIQKDFQNAPLPSLI--YKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKN 241

Query: 239 LEVPAGMGVILRTAGASR 256
           +    G   I  T     
Sbjct: 242 V----GKENISVTYEEGD 255


>gi|167037847|ref|YP_001665425.1| ribonuclease [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040744|ref|YP_001663729.1| ribonuclease [Thermoanaerobacter sp. X514]
 gi|166854984|gb|ABY93393.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X514]
 gi|166856681|gb|ABY95089.1| ribonuclease, Rne/Rng family [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
          Length = 474

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 215/400 (53%), Gaps = 7/400 (1%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I +V+K  Q ++VQ+ KE  G K   VT  +SL G+Y VLMPN        R     
Sbjct: 80  PKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYIGISHRIEEEV 139

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             ++   +       P G+G+I+RTA    T+ +I+ D E L+RL++ +++   N+  P 
Sbjct: 140 ERKR--LQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELIRLYEKIQKDFQNAPLPS 197

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y+E +   + +RDL   ++ EI+V+ ++ Y   K ++K +      +     +   + 
Sbjct: 198 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLL 254

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G + Q+D L + +V L S G+VII+QTEAL  IDVN+G+   +  +E+T  +TNLEA
Sbjct: 255 GIYGADFQVDKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 314

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEIA QL+LRD+ G+I++DFIDM+ +   R + +  K  L+KDR +  V   +  GL+E
Sbjct: 315 AEEIALQLKLRDIGGIIIIDFIDMKNENFKRDLLEFFKRELQKDRTKCTVLGYTQLGLVE 374

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R+RS V     + C  C+G G + S   +   +  ++E  L    A  I +  +  
Sbjct: 375 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYRRLRNNIERVLRHVNARKIYIKGNDK 434

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           VV   +  ++  I  Y+ +F V + +V+        F IE
Sbjct: 435 VVK--IASEKGIIKFYKEKFNVDLELVVDNNKKYGHFEIE 472



 Score = 98.5 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 11/258 (4%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++D      +++ +L + +++E   E    K I GNIY  K+  V   +QAAFVD G
Sbjct: 2   KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 60

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI----AQTDSEAVADDVTHGDVTIPNDH 118
             ++ FL F ++      +P S  Q L     I    ++         VT          
Sbjct: 61  IGKNAFLFFDDVLFQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYV 120

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
            L         S   EEE       ++V  ++    G           +  I+E ++   
Sbjct: 121 VLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELI 180

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
            L  +I K+ +     ++             + +    E     + +  + +N+K   + 
Sbjct: 181 RLYEKIQKDFQNAPLPSLI--YKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKN 238

Query: 239 LEVPAGMGVILRTAGASR 256
           +    G   I  T     
Sbjct: 239 V----GKENISVTYEEGD 252


>gi|157414102|ref|YP_001484968.1| ribonuclease G and E [Prochlorococcus marinus str. MIT 9215]
 gi|157388677|gb|ABV51382.1| Ribonuclease G and E [Prochlorococcus marinus str. MIT 9215]
          Length = 606

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/576 (23%), Positives = 238/576 (41%), Gaps = 11/576 (1%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180
           ++  I   + E     I +A  ++  + ++      +  P + K+  + I E+++ +Q +
Sbjct: 33  QIGDIFLGTVENVLPGIDAAFINIGESEKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE  G+KG  +T  +S+ G+Y VL P   +G  ISRK  N    ++  +    L 
Sbjct: 93  LVQVIKEPTGSKGPRLTGSISIPGKYLVLQP-YGQGVNISRK-INTETERSRLKALGVLI 150

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            PA  G++ RT      +  +  D E+L++ W+NV +++  S  P+LV  + +   + +R
Sbjct: 151 KPASTGLLFRTEAEKIKEELLIEDLEHLIQQWENVLKVSEVSNPPNLVKRDDDFSLKILR 210

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D        II+  +     AKDF+                   IF +  I+  +    Q
Sbjct: 211 DHIKASTKSIIIDSKLSVARAKDFLINCESDIDITFHDNSLNQHIFEKYEIKKTIQKALQ 270

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY+II  TEAL  IDVNSG  TR      T L TN EAA EI+RQ++LR++ 
Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDME +++   + +    ++K D AR Q+  ++  GL+E++R+R   ++ E  
Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDFARPQIAQLTELGLVELTRKRQGQNIYELF 390

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-----TAHNIIVHTHSDVVLYLLNQK 535
            K  + C    +I +  +  +S L+               + +I     +D    +++++
Sbjct: 391 GKKSSKCDDTEHIENILNQEISNLKIKNVENKSNQSNDLKSIDIDASQSTDEQEKIMDKE 450

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
                +                L       +    V                P      E
Sbjct: 451 LLNFKDLSKENSSYKKENDNDNLIQSNLKEKNIITVDLTNEEKIVFSQLGINPLIKLGKE 510

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---RRRPATDHHDAGVVSD 652
            +  +  +     ++  E   DN  ++        +    +   +     +  D      
Sbjct: 511 YLTSNNFVRLKDSNKEKEKTLDNKKTKSKQIKKTSKPGEEKIQLKIEAKANSKDKSTNKI 570

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
             S + +  D  D       +TN       +    E
Sbjct: 571 NESNEVIFSDKKDEIELSDVLTNARKKRRRSSASIE 606



 Score = 75.4 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  +L D+RV+EL       +   G+I+L  V  V P + AAF+
Sbjct: 1  MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVSDLGP 72


>gi|28493441|ref|NP_787602.1| ribonuclease G [Tropheryma whipplei str. Twist]
 gi|28476482|gb|AAO44571.1| ribonuclease G [Tropheryma whipplei str. Twist]
          Length = 549

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 8/354 (2%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I+  ++    +LVQ+ K+   NKG  VT  LSLAGRY V  P +     +SR+I  
Sbjct: 143 KAQSIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLAGRYLVYAPGSG---GVSRRIAP 199

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               +  K +   +E      +I+RTA    T  ++  D + L   +  ++E + N+ AP
Sbjct: 200 SERARLQKSLKAAVEDV--SSLIIRTAAVGATSEQLGNDAKMLCEAYRAIKEKSENATAP 257

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++Y E +L+ R +RD +  D  E+IV G + Y     +++ + P     V +      +
Sbjct: 258 SIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSYLQDVSPEMLGKVSK-SSEEDL 316

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNL 404
           F    I  Q+D     +V LPS G ++++ TEA+  IDVN+G+        + T    NL
Sbjct: 317 FDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVIDVNTGKFVGTSSSLEQTVTDNNL 376

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EA +EI RQ+RLRDL G++V+DFIDM  ++N   V  +L E+L  DR+R +V  I++ GL
Sbjct: 377 EAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNRLLEALSLDRSRHKVAEITSLGL 436

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
           ++M+R+++  ++ E  +++C  C G G + +         +      +   A +
Sbjct: 437 VQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPNKPRARKKHRLRQVNKEASD 489



 Score = 94.7 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML+  S   + +V +L +  + E          + GNIY+ +V  V P ++AAFVD G  
Sbjct: 68  MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127

Query: 65  RHGFLPFLE 73
           R+  L   E
Sbjct: 128 RNAVLYSGE 136


>gi|28572447|ref|NP_789227.1| ribonuclease E [Tropheryma whipplei TW08/27]
 gi|28410579|emb|CAD66965.1| ribonuclease E [Tropheryma whipplei TW08/27]
          Length = 549

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 8/354 (2%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +   I+  ++    +LVQ+ K+   NKG  VT  LSLAGRY V  P +     +SR+I  
Sbjct: 143 KAQSIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLAGRYLVYAPGSG---GVSRRIAP 199

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               +  K +   +E      +I+RTA    T  ++  D + L   +  ++E + N+ AP
Sbjct: 200 SERARLQKSLKAAVEDV--SSLIIRTAAVGATSEQLGNDAKMLCEAYRAIKEKSENATAP 257

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++Y E +L+ R +RD +  D  E+IV G + Y     +++ + P     V +      +
Sbjct: 258 SIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSYLQDVSPEMLGKVSK-SSEEDL 316

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNL 404
           F    I  Q+D     +V LPS G ++++ TEA+  IDVN+G+        + T    NL
Sbjct: 317 FDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVIDVNTGKFVGTSSSLEQTVTDNNL 376

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EA +EI RQ+RLRDL G++V+DFIDM  ++N   V  +L E+L  DR+R +V  I++ GL
Sbjct: 377 EAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNRLLEALSLDRSRHKVAEITSLGL 436

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
           ++M+R+++  ++ E  +++C  C G G + +         +      +   A +
Sbjct: 437 VQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPNKPRARKKHRLRQVNKEASD 489



 Score = 94.7 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ML+  S   + +V +L +  + E          + GNIY+ +V  V P ++AAFVD G  
Sbjct: 68  MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127

Query: 65  RHGFLPFLE 73
           R+  L   E
Sbjct: 128 RNAVLYSGE 136


>gi|33862057|ref|NP_893618.1| ribonuclease E/G [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634275|emb|CAE19960.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 605

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/571 (23%), Positives = 238/571 (41%), Gaps = 13/571 (2%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC-IQEVIKNRQIL 180
           ++  I   + E     I +A  D+  + ++      +  P + K+    I E+++ +Q +
Sbjct: 33  QIGDIFLGTVENVLPGIDAAFIDIGESEKNGFIHVSDLGPLRLKKGVVGITELLEPKQKV 92

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE  GNKG  +T  +SL G+Y +L P   +G  ISRK  N    ++       L 
Sbjct: 93  LVQVMKEPTGNKGPRLTGNISLPGKYLILQP-YGQGVNISRK-INTETERSRLRALGVLI 150

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   G++ RT      +  +  D E+L++ WD V + + N+  P+L+  + N   + +R
Sbjct: 151 KPPSTGLLFRTEAEQIKEEFLIEDLEHLIQQWDQVLKNSENNHPPNLISRDENFSLKILR 210

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D      S+I++  +    +AKDF+     +   +    E    I  +  I   +    Q
Sbjct: 211 DYIKSSTSKIVIDNKIALEKAKDFLVNNDSNLDLVFHNNEINEHILEKYQINKTIQKALQ 270

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY+II  TEAL  IDVNSG  TR      T L TN EAA EI+RQ++LR++ 
Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAIEISRQMKLRNIG 330

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G++V+DFIDME +++   + +    ++K D AR Q+  ++  GL+E++R+R   ++ E  
Sbjct: 331 GVLVIDFIDMESRRDQFQLLEHFTLAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390

Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540
           +  C  C G G+     +     L++ +       +  I     SD     L + + TI+
Sbjct: 391 STKCNNCNGLGHKEKLPNYKNISLKTNQ---NAKKSSKINDTKISDSTPIQLIENQETII 447

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
             E        +             ++G+  +                  +       Q 
Sbjct: 448 G-EELTKTKNTIKDDDHSN------KRGNDNELPNTNNRSEKKVITVELSNDEKIVYSQL 500

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                I   +        +  E+     +    +  +        +   ++     +  +
Sbjct: 501 GINPLIKLGKEYLSSNHLVRLEDVKNKEKDDSEQNVKTNNKVTSKNTNKITSTFDSKEEV 560

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           +  +   + P         EN     T+  D
Sbjct: 561 EADYSKEVNPDKKLPKVTNENEVIETTDEMD 591



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  +L D++V+EL       +   G+I+L  V  V P + AAF+
Sbjct: 1  MSQQIVI----AEQARIAALLTDDQVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          D G   ++GF+   ++ P
Sbjct: 55 DIGESEKNGFIHVSDLGP 72


>gi|307266676|ref|ZP_07548204.1| ribonuclease, Rne/Rng family [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918278|gb|EFN48524.1| ribonuclease, Rne/Rng family [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 477

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 126/400 (31%), Positives = 215/400 (53%), Gaps = 7/400 (1%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
              I +V+K  Q ++VQ+ KE  G K   VT  +SL G+Y VLMPN        R     
Sbjct: 83  PKNITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYVGISHRIEEEG 142

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             ++   +       P GMG+I+RTA    T+ +++ D + L+RL++ +++   N+  P 
Sbjct: 143 ERKR--LQEIVKELKPDGMGIIVRTAALEATEQQMREDLDELIRLYEKIQKDFQNAPLPS 200

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y+E +   + +RDL   ++ EI+V+ ++ Y   K ++K +      +     +   + 
Sbjct: 201 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLM 257

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              G + Q++ L + +V L S G+VII+QTEAL  IDVN+G+   +  +E+T  +TNLEA
Sbjct: 258 GIYGADFQVEKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 317

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEIA QL+LRD+ G+I++DFIDM+ +   + + +  K+ L+KDR +  V   +  GL+E
Sbjct: 318 AEEIALQLKLRDIGGIIIIDFIDMKNENFRKDLLEFFKKELQKDRTKCSVLGYTQLGLVE 377

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M+R+R+RS V     + C  C+G G + S   +   +  ++E  L       I +  +  
Sbjct: 378 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYKRLRNNIERVLRHIKVRKIYIKGNDK 437

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           VV   +  ++  +  Y+ +F V + VV+        F IE
Sbjct: 438 VVK--IAAEKEIVKFYKEKFNVDLEVVVDNNKKYGYFEIE 475



 Score = 93.9 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++++D      +++ +L + +++E   E    K I GNIY  K+  V   +QAAFVD G
Sbjct: 5  KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63

Query: 63 GNRHGFLPFLE 73
            ++ FL F +
Sbjct: 64 IGKNAFL-FSD 73


>gi|261749191|ref|YP_003256876.1| ribonuclease G [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497283|gb|ACX83733.1| ribonuclease G [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 507

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/409 (29%), Positives = 196/409 (47%), Gaps = 16/409 (3%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
           K + +  I++++   Q +LVQI KE   NKG  +T  L + GR  VL+P + K  +IS+K
Sbjct: 94  KKEDRSSIEKILYPGQKILVQISKESISNKGPKLTAKLCIPGRNLVLIPFSEK-ISISKK 152

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           I N  ++  L    + +  P   G+I+RTA  S+ +   K++  +L + W N+    +  
Sbjct: 153 IKNTKEKSRLISCIKKI-QPKEFGIIIRTAAYSKKEQVFKKELFFLRKKWKNILSNIIKI 211

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
               ++  E +     +RD +  D   I  +     +E   ++ L+ P    I++ Y   
Sbjct: 212 PPIRVL-SESSKTSCLLRDTFNDDFKSIYCNNRFLCQEIHSYLSLIAPEKTSIIKHYRGD 270

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG------RSTREHCIE 396
            PIF + GIE Q+ +     V L +  Y++I  TEAL  IDVNSG      ++  E    
Sbjct: 271 IPIFEKYGIEKQIQTSLGKNVPLANGAYLVIEHTEALHVIDVNSGMINHIKKNCTESERI 330

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           DT L+ NL AA EIARQLRLRD+ G+IVVDFIDM E    + + + LKE +K DRA+ Q+
Sbjct: 331 DTILKVNLLAATEIARQLRLRDMGGIIVVDFIDMSEPYQRKKLYEHLKEKMKNDRAKHQI 390

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
              + FGL++ +R R+R  +  +               S       +   +E  +     
Sbjct: 391 LPPNEFGLVQFTRHRVRPELKANHHDKKPQ-------ESPIVYIHHLEFILETLVKDKFH 443

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             I +H H+ V  YL     +   ++  ++   I ++         + I
Sbjct: 444 KGIQLHIHTFVAAYLKKGFPSIQHKWLFKYKKWIKIIPRDSFKYTEYKI 492


>gi|237755665|ref|ZP_04584276.1| ribonuclease G [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692177|gb|EEP61174.1| ribonuclease G [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 470

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 112/402 (27%), Positives = 196/402 (48%), Gaps = 12/402 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           + +       +LVQ+ +     KGA ++  +SL G+Y VL+P +    +IS K  N  +R
Sbjct: 77  VCKNTDKGSSILVQVKRSPVSTKGAKLSCKISLPGKYLVLLPQSKGKVSISSKYENNDER 136

Query: 230 KNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
             +KE  + L         G+I+RTA        I  DF++L+ LW+ +++      AP 
Sbjct: 137 NEIKERIKNLLHKINQENYGLIIRTAAKDAPDEAILEDFKFLIELWNQIQKDYNKKKAPS 196

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           ++YEE       +RD        I           K   +    +  ++    +    +F
Sbjct: 197 IIYEEPFKAFAILRDYAGSFSEIISDDVSILKMIKKFVSENFPNANIKMTPYRKRKESLF 256

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
           +   ++  ++ +      L S  Y++I +TEALV IDVNSG   ++  +E+TA + NLEA
Sbjct: 257 YEYELDKLINKILSPYAYLKSGSYLVIQETEALVVIDVNSGSCHKQKNLEETAFRINLEA 316

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
             EI RQ+RLRDL+G++V+DFIDM  +++   + ++LKE  KKD+  V++  ++  GLLE
Sbjct: 317 IPEIVRQIRLRDLSGIVVIDFIDMVNQEHKEVIVERLKEEFKKDKRPVKIKGLTQLGLLE 376

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           +SR+++  S+++  +  C +C G GYI+SQ  V   + +++ +         II    S 
Sbjct: 377 LSRKKLEESLIKQLSDYCQHCYGRGYIKSQDVVMFELEKTINKLKPFAKMKIIINPKLSR 436

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
            V  LL   +             + +    ++    F +EK 
Sbjct: 437 AVDSLLENLKLK---------ELVEIEYNNKMQLDKFEVEKV 469



 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  K++I    ++ T  ++L +N   E   E     +  G+IY  KV R   +++A FVD
Sbjct: 1  MDRKLII-TKGIKNTFYLILENNIPVEFKIEDIEISKQTGSIYKGKVLRYSHAMEAFFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G ++  FLP  ++
Sbjct: 60 IGEDKEAFLPKKDV 73


>gi|78779977|ref|YP_398089.1| ribonuclease [Prochlorococcus marinus str. MIT 9312]
 gi|78713476|gb|ABB50653.1| ribonuclease, Rne/Rng family [Prochlorococcus marinus str. MIT
           9312]
          Length = 605

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/424 (27%), Positives = 205/424 (48%), Gaps = 6/424 (1%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180
           ++  I   + E     I +A  ++  + ++      +  P + K+  + I E+++ +Q +
Sbjct: 33  QIGDIFLGTVENVLPGIDAAFINIGESDKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           LVQ++KE  G+KG  +T  +S+ G+Y +L P   +G  ISRK  N    ++  +    L 
Sbjct: 93  LVQVIKEPTGSKGPRLTGNISIPGKYIILQP-YGQGVNISRK-INTETERSRLKALGVLI 150

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
            P   G++ RT      +  +  D E L++ W+N+ +++  S  P+LV  + +   + +R
Sbjct: 151 KPPSTGLVFRTEAEKIKEELLIDDLEKLIQQWENILKISEASNPPNLVKRDDDFSLKILR 210

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D        II+  +     AKDF+     +             I  +  I+  +    Q
Sbjct: 211 DHIKSSTKSIIIDSKFSVERAKDFLINYESNIGIEFHDNNLNQNILEKYEIKKTIQKALQ 270

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V LPS GY+II  TEAL  IDVNSG  TR      T L TN EAA EI+RQ++LR++ 
Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+IVVDFIDME +++   + +    ++K D AR Q+  ++  GL+E++R+R   ++ E  
Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390

Query: 481 TKVCTYCKGAGY---IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
            K C+ C G G+   I +  +  L I    E+         + + T           ++ 
Sbjct: 391 GKKCSICNGTGHVENILNNENPNLKIKNIDEKSNQSNIIKPLDIDTSKSAENQEKIIEKE 450

Query: 538 TIVE 541
            + +
Sbjct: 451 LLNQ 454



 Score = 75.0 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  +L+D+RV+EL       +   G+I+L  V  V P + AAF+
Sbjct: 1  MSQQIII----AEQARIAALLKDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G  +++GF+   ++ P
Sbjct: 55 NIGESDKNGFIHVSDLGP 72


>gi|283455282|ref|YP_003359846.1| ribonuclease G [Bifidobacterium dentium Bd1]
 gi|283101916|gb|ADB09022.1| rne Ribonuclease G [Bifidobacterium dentium Bd1]
          Length = 926

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   + +      +               +  
Sbjct: 446 DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 505

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 506 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 565

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 566 RFLVLVPSGGMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAITKD 622

Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D  ++IV GE+ Y   
Sbjct: 623 LESLVRQWERISAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRI 682

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 683 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 742

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++DF+DM    N 
Sbjct: 743 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 802

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 803 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 862

Query: 497 SSVA 500
               
Sbjct: 863 EPTV 866



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 458 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 517

Query: 75  HPD 77
           + D
Sbjct: 518 NWD 520


>gi|288818732|ref|YP_003433080.1| ribonuclease G and E [Hydrogenobacter thermophilus TK-6]
 gi|288788132|dbj|BAI69879.1| ribonuclease G and E [Hydrogenobacter thermophilus TK-6]
 gi|308752319|gb|ADO45802.1| ribonuclease, Rne/Rng family [Hydrogenobacter thermophilus TK-6]
          Length = 466

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/413 (27%), Positives = 193/413 (46%), Gaps = 13/413 (3%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
           +  +   + +  K+     + ++  + +LVQ+V+E  G KGA +T+ + L G+Y + +PN
Sbjct: 63  EKEAYLPIKQNCKKNGEEIKPVRVGEEVLVQVVREPVGEKGAKLTSRIRLVGKYLIYLPN 122

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +  +  SR      +R     I          GVI R   +  ++ EI +D + L RLW
Sbjct: 123 ANDVKFSSRLEEEDRERLKAIAIEVLPRYGFSCGVIFRRHASKASEEEIIKDIDSLKRLW 182

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + +       P L+ EE     + I+D +  ++ E++V     + +   F++   PS 
Sbjct: 183 LKILKKFSAQKKPGLLLEEYPNYIKMIKDHW-YELGEMVVDNPYVWNDIVSFLEEFEPSL 241

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            + V   +D      R  I      +    V L   GY++I +TEA+  IDVNSG     
Sbjct: 242 VKKVVYVKDVSAYINRYRIHDTFRKMLSKYVWLRGGGYIVIEETEAMTVIDVNSGEP-YG 300

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              E+ AL TNLEAA+EIA+ + LRD+ G+IV+DFIDM+ ++N   V + L+ES  ++  
Sbjct: 301 ESHEENALNTNLEAAKEIAKHIMLRDIGGIIVIDFIDMKRQENRDLVIRTLQESFGEEAC 360

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
            VQ+   +  GLLEM+R++   SV    T+ C  CKG G +R +S +A  + + +     
Sbjct: 361 NVQIYGFTRLGLLEMARKKSGESVSSLLTESCPLCKGRGKVRGKSLLAFELEKDLRRESH 420

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                 I +H +      +           E      +N+V    +    + I
Sbjct: 421 ----GVIDLHVNPQSADTVR-------SVIEKNGFKYVNMVEDANVEYNDYEI 462


>gi|309802884|ref|ZP_07696985.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022]
 gi|308220351|gb|EFO76662.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022]
          Length = 917

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   + +      +               +  
Sbjct: 437 DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 496

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 497 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 556

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 557 RFLVLVPSGGMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAITKD 613

Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D  ++IV GE+ Y   
Sbjct: 614 LESLVRQWERISAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRI 673

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 674 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 733

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++DF+DM    N 
Sbjct: 734 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 793

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I   
Sbjct: 794 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 853

Query: 497 SSVA 500
               
Sbjct: 854 EPTV 857



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 449 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 508

Query: 75  HPD 77
           + D
Sbjct: 509 NWD 511


>gi|289578060|ref|YP_003476687.1| ribonuclease, Rne/Rng family [Thermoanaerobacter italicus Ab9]
 gi|297544331|ref|YP_003676633.1| ribonuclease, Rne/Rng family [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527773|gb|ADD02125.1| ribonuclease, Rne/Rng family [Thermoanaerobacter italicus Ab9]
 gi|296842106|gb|ADH60622.1| ribonuclease, Rne/Rng family [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 476

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 130/462 (28%), Positives = 231/462 (50%), Gaps = 9/462 (1%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
           ++    +           +  I     +   + + +A  D+                +  
Sbjct: 22  ENGKLKEYHPEKSDGKNILGNIYKGKIQNVLKGMQAAFVDIGIGKNAFLFFDDVFQHENL 81

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
            +   I +V+K  Q ++VQ+ KE  G K   VT  +SL G+Y VLMPN        R   
Sbjct: 82  PKS--ITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYLGISHR--I 137

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
              + +   +       P GMG+I+RTA    T+ +++ D E L+ L++ +++   N+  
Sbjct: 138 EKEEERKKLQDIAKKLKPEGMGLIVRTAALEATEQQMREDLEELIHLYEKIQKDFQNASL 197

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
           P L+Y+E + + + ++DL  ++I EI+V+ +  Y   K ++K +      +     +   
Sbjct: 198 PSLIYKEEDFVIKYLKDLLSEEIDEIVVNDKDEYENIKRYLKNVAKENISVTY---EEGD 254

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           +    G++ Q++ L + +V L S G+VII+QTEAL  IDVN+G+   +  +E+T  +TNL
Sbjct: 255 LMGIYGVDFQVEKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNL 314

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAAEEIA QL+LR++ G+I++DFIDM+ +   R++ +  K+ L+KDR +  V   +  GL
Sbjct: 315 EAAEEIALQLKLRNIGGIIIIDFIDMKNENFKRNLLEFFKKELQKDRTKCTVLGYTQLGL 374

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           +EM+R+R+RS V     + C  CKG G + S   +   +  ++E  L       I +  +
Sbjct: 375 VEMTRKRVRSQVGSYLKEKCPTCKGEGVVYSTEYIYKRLRNNIERVLRHVNVQKIYIKGN 434

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
             VV   +  ++  I  Y+ +F V + +V+        F IE
Sbjct: 435 DKVVK--IAAEKGIIKFYKEKFNVDLELVVDNNKEYGYFEIE 474



 Score = 96.6 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++++D      +++ +L + +++E   E    K I GNIY  K+  V   +QAAFVD G
Sbjct: 5  KRLILDIDE-NLSQIALLENGKLKEYHPEKSDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63

Query: 63 GNRHGFLPFLEI 74
            ++ FL F ++
Sbjct: 64 IGKNAFLFFDDV 75


>gi|257468861|ref|ZP_05632955.1| ribonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|317063111|ref|ZP_07927596.1| ribonuclease G and E [Fusobacterium ulcerans ATCC 49185]
 gi|313688787|gb|EFS25622.1| ribonuclease G and E [Fusobacterium ulcerans ATCC 49185]
          Length = 489

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 126/495 (25%), Positives = 237/495 (47%), Gaps = 18/495 (3%)

Query: 74  IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133
           I+ D +Q     R A++++  + +   E   +   +G +      ++      A  +   
Sbjct: 6   INIDEFQ----SRAAIIEDGKVVEILVEREEEGRINGSIYKGKVANVLPGMESAFVNIGL 61

Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193
           E+   +         V D++    + +         I++++     ++VQI+ E RG KG
Sbjct: 62  EKNGFL--------YVNDLREFEEKYLDGILNSSRPIEDILNVGDDVVVQILNEPRGTKG 113

Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253
           A VTT+ ++ G+Y VLMPN        +        +   E       P  MGVI+RTA 
Sbjct: 114 ARVTTHFTIPGKYLVLMPNNDHIAISKKIRDEEERERL--ENIFKEIKPENMGVIIRTAA 171

Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313
             +++   +R+ EYL++ W+++ +    +    ++Y++  +I   +RD++  DI E+IV 
Sbjct: 172 FGKSEFHFEREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVD 231

Query: 314 GEKGYREAKDFMKLLMPSYARIV---RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
            E+ Y E  D++        +      +      IF   GI  ++D      V L   GY
Sbjct: 232 NEEVYWEVIDYINAFSEKTLKTKIKLYRDGKEKDIFDLYGINEEIDKALNEVVWLECGGY 291

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           ++I +TEAL+SIDVN+G++T    +E+T + TN+EAA+EI RQLRLR+  G+I++DFIDM
Sbjct: 292 LVIQKTEALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDM 351

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
             +++   V + L++ L++DR +  +   ++ GL+EM+R+R    +     +VC +C G 
Sbjct: 352 RVEEDKIKVLEALEKHLQRDRIKNNIVHFTDLGLVEMTRKRAGKPLAYYFQEVCPHCNGT 411

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
           G I+SQ ++   +++ ++          I V     ++          I E+      +I
Sbjct: 412 GKIKSQDALIHELMKEIKMCSEDKDISTIKVKLSKTLIESFKEIYFEIIKEFLKMKKKAI 471

Query: 551 NVVIGIELADKLFYI 565
            + +        + I
Sbjct: 472 ELEVDTN-NSCQYEI 485



 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          N+++I+     ++R  ++ D +V E+  E E + +I G+IY  KV  V P +++AFV+ G
Sbjct: 2  NQIVINIDE-FQSRAAIIEDGKVVEILVEREEEGRINGSIYKGKVANVLPGMESAFVNIG 60

Query: 63 GNRHGFLPFLEI 74
            ++GFL   ++
Sbjct: 61 LEKNGFLYVNDL 72


>gi|300933220|ref|ZP_07148476.1| ribonuclease E [Corynebacterium resistens DSM 45100]
          Length = 1210

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 134/568 (23%), Positives = 232/568 (40%), Gaps = 23/568 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G      P    +   I + ++    +LVQ++K+  G+KGA ++  +S AGRY V  P  
Sbjct: 471  GEMNWHSPHLHSKNRRIDQALRAGDQILVQVIKDPVGHKGARLSNRVSFAGRYLVYFP-E 529

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                 ISRK+  P  ++   +      +P   G I+RTA  +  + +I  D   L  LW+
Sbjct: 530  GTTAGISRKLPEPERKR--LKEILANVIPGDGGAIIRTAAENVPEEQIGEDVARLHSLWE 587

Query: 274  NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
             V +    + +        +YEE N++ + +RD++ +D  E+IV G K ++  +D++  +
Sbjct: 588  KVSKEENKARSRKGAKPITLYEEPNMLVKVVRDIFNEDFKELIVDGAKSWQVVRDYVARM 647

Query: 329  MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P     + ++          F    ++ QL      +V LPS GY+II+ TEA+  IDV
Sbjct: 648  APDLQDRLTKWNPNKHEGEDVFAAMHLDEQLTKALSRKVWLPSGGYLIIDPTEAMTVIDV 707

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G        +E+T  Q NLEAAEEI RQ+RLRDL G+IVVDFIDM  ++N   V ++L
Sbjct: 708  NTGSFVGAGGNLEETVTQNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLEENRDLVLRRL 767

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
             E L +DR R +V  +++ GL++M+R+R+ + +LE+ + VC  C+G G I     V    
Sbjct: 768  TEYLGRDRTRHKVSEVTSLGLVQMTRKRLGTGLLETFSTVCAECEGRGVIIHSDPVEQDF 827

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
              +                  +           +T    E                    
Sbjct: 828  DEAPRRDHGGRKDRQQARRERATRENIRKGAAESTGDNAEH---------DDSGHGGSSH 878

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
              ++ +P  A           +++                       S +        E 
Sbjct: 879  RGKRRAPGGAHGGHRDNEAGSARSERRRTAAHHESDRAGSARRQHDSSDQQSHGQDSPEN 938

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN-VIDDSFDMYMEPSDITNHNLLENG 682
            +     +R RRRR  R  ++            +     +++   + +           + 
Sbjct: 939  TKTTATRRVRRRRVVRSISEPRHQSENQSADEVLTHRRNENRKAHSDDRTQRRRGRQHDR 998

Query: 683  AHGFTENYDVSIPPVSTPEMESSNSSSD 710
                 ++   S    +  E     S +D
Sbjct: 999  NSASIDDIAASALRTAKAEDPDEPSGAD 1026



 Score = 83.9 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V V+ D  + E    SE ++ + GNIYL +V  V  S++AAFVD G  R+  L   E+
Sbjct: 414 TQVGVVEDGMLVEHFVTSETQQSMVGNIYLGRVQNVLSSMEAAFVDIGTGRNAVLYAGEM 473

Query: 75  HP 76
           + 
Sbjct: 474 NW 475


>gi|254526459|ref|ZP_05138511.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537883|gb|EEE40336.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. MIT 9202]
          Length = 606

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 127/531 (23%), Positives = 216/531 (40%), Gaps = 10/531 (1%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
             + I E+++ +Q +LVQ++KE  G+KG  +T  +S+ G+Y VL P   +G  ISRK  N
Sbjct: 78  GTFGITELLEPKQKVLVQVIKEPTGSKGPRLTGSISIPGKYLVLQP-YGQGVNISRK-IN 135

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               ++  +    L  PA  G++ RT      +  +  D E+L++ W+NV +++  S  P
Sbjct: 136 TETERSRLKALGVLIKPASTGLLFRTEAEKIKEELLIEDLEHLIQQWENVLKVSEVSNPP 195

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
           +LV  + +   + +RD        II+  +     AKDF+                   I
Sbjct: 196 NLVKRDEDFSLKILRDHIKASTKSIIIDSKLSVARAKDFLINCESDIDITFHDNSLNQHI 255

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F +  I+  +    Q  V LPS GY+II  TEAL  IDVNSG  TR      T L TN E
Sbjct: 256 FEKYEIKKTIQKALQPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCE 315

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA EI+RQ++LR++ G+IVVDFIDME +++   + +    ++K D AR Q+  ++  GL+
Sbjct: 316 AAVEISRQMKLRNIGGVIVVDFIDMESRRDQFQLLEHFTSAIKDDFARPQIAQLTELGLV 375

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGY---IRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
           E++R+R   ++ E   K  + C    +   I +Q    L I     +        +I + 
Sbjct: 376 ELTRKRQGQNIYELFGKKSSKCDDTEHIENILNQEISNLKIKNVANKSNQSNNLKSIDID 435

Query: 523 THSDVVLYLLNQKRATI--VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
                        +  +   +                L       +    V         
Sbjct: 436 ASQSTDEQEKIMDKELLNFKDLSKENSSYKKENDNDNLIQSNLKEKNIITVDLTNEEKIV 495

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---R 637
                  P      E +  +  +L    ++  E   DN  ++        +    +   +
Sbjct: 496 FSQLGINPLIKLGKEYLTSNNFVLLKDSNKEKEKPLDNKKTKSKQIKKTSKTGEEKIQLK 555

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                + +D        S + +  +  D       +TN       +    E
Sbjct: 556 IEEKANSNDKSTNKINESNEVIFTNKKDEIELSDALTNARKKRRRSSASIE 606



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+ +++I     E+ R+  +L D+RV+EL       +   G+I+L  V  V P + AAF+
Sbjct: 1  MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVSDLGP 72


>gi|313207045|ref|YP_004046222.1| ribonuclease, rne/rng family [Riemerella anatipestifer DSM 15868]
 gi|312446361|gb|ADQ82716.1| ribonuclease, Rne/Rng family [Riemerella anatipestifer DSM 15868]
 gi|325335518|gb|ADZ11792.1| Ribonucleases G and E [Riemerella anatipestifer RA-GD]
          Length = 519

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 103/574 (17%), Positives = 214/574 (37%), Gaps = 63/574 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LI ++    +++ ++ D R+ EL  + +    + G+I+L K+ ++ P+L AAFV+
Sbjct: 1   MKKELLI-SNEGGASKIALIEDGRLFELHEQEQESDFVVGDIFLGKIKKLAPNLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL + ++ P Y                              +  ++   + S 
Sbjct: 60  IGYDKDAFLHYQDLGPQY-----------------------LTYRKFLNETLSKRKNDSG 96

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +  PI     +      + A +DVV      +  S +      +        +  R ++
Sbjct: 97  LKNFPIEKALDKNGMVDSVLAKDDVVLLQVTKEPISTKGARISTQ------VSLTGRFLV 150

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L+   ++   +K    +            +     G  I R +        L      L 
Sbjct: 151 LIPFDQKVSVSKKIKDSAERERLRTLIESIKPEGFGVII-RTVAEGKKVAELHNGMNQLI 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                     T   +  + ++             +     N+    ++ ++ ++++    
Sbjct: 210 QKW------ETCFKNIQRGKVPSKILSEEEKASAILRDNFNADFVSIICDDEDMVQ---- 259

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                ++   +       +   +F +  +P       + +          I         
Sbjct: 260 -----EMKNYLEVIAPERKNIVEFYEHHIPLLEYYNVEKQLKQSFGKHVNI--------- 305

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI--EDTALQTNLEAAEEIARQLRLRD 418
                    Y++I  TEAL  IDVNSG +        ++ A   N  AA EIARQLRLRD
Sbjct: 306 ---PSSKGAYLVIEHTEALHVIDVNSGNNITAGSQANKEHAFNVNRMAATEIARQLRLRD 362

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM + ++ R + + LK  +K+D+A+ ++   S FGL++++RQR+RS  + 
Sbjct: 363 MGGIIVVDFIDMRDAEHRRELYEHLKNEMKRDKAKHKILPPSKFGLIQITRQRVRSETVI 422

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            T +      G           ++    V + L+Q     + +H H  V  YL     + 
Sbjct: 423 ETKEENPNKDGEILAPVVIVEKMT---EVLKGLMQKEKGRLYLHAHPFVEAYLTKGLMSI 479

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
             ++  ++   + ++         + +      +
Sbjct: 480 QTKWYLKYKKWVTIIPRDSFKYLEYRVYNSQKQE 513


>gi|255534617|ref|YP_003094988.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340813|gb|ACU06926.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
           [Flavobacteriaceae bacterium 3519-10]
          Length = 519

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 133/504 (26%), Positives = 227/504 (45%), Gaps = 22/504 (4%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN-- 143
           + ALL++  + +   +    D   GD+ I     L      A  S   E+++ +   +  
Sbjct: 15  KIALLEDGRLFELHEQEDKSDFVVGDLFIGKVKKLAPNLNAAFVSIGYEKDAFLHYQDLG 74

Query: 144 -----------DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
                      D VS  +        ++  +  +   I +V+     +++QI KE    K
Sbjct: 75  PQYLTYKKFLKDTVSKKQQTTSLKNFEIQPEINKNGLIDKVLAKDDSVILQITKEPISTK 134

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           G  ++T +SL GR+ VL+P   K  +IS+KI +  +R+ L+ +   ++   G GVI+RT 
Sbjct: 135 GPRISTQISLTGRFLVLIPF-DKSVSISKKIESAEERERLRTLIESIKPE-GFGVIIRTV 192

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312
              +   E+  D   L++ WD   +    +  P  V  E +     +RD +  D   II 
Sbjct: 193 AEGKKVAELHNDMNQLVQKWDTAFKNLQKNKVPSRVLSEEDKASAILRDNFNSDFVSIIC 252

Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS--RGY 370
             E+   + K +++++ P    IV+ Y+ P P+     +E QL       V +PS    Y
Sbjct: 253 DDEQMVDDMKAYIEVIAPERKNIVQFYDKPVPLMEYYNVEKQLKQSFGKHVNIPSSKGAY 312

Query: 371 VIINQTEALVSIDVNSGRSTREHCI--EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
           ++I  TEAL  IDVNSG +         + AL  N  AA EIARQLRLRD+ G+IVVDFI
Sbjct: 313 LVIEHTEALHVIDVNSGNNISSGNSASREHALTVNKMAATEIARQLRLRDMGGIIVVDFI 372

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488
           DM    + R +   LK  + +D+AR ++   S FGL++++RQR R   +  T +      
Sbjct: 373 DMISADHRRELYDHLKNEMSRDKARHKILPPSKFGLIQLTRQRTRPENIIETKEENP--N 430

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
            AG I +   V   +   V   ++Q     I +H H  V  YL     +  +++  ++  
Sbjct: 431 AAGEILAPIVVVERME-EVIRNIIQTEKGKIFLHAHPFVEAYLTKGFMSIQMKWYLKYKK 489

Query: 549 SINVVIGIELADKLFYIEKGSPVQ 572
            + ++         + +      +
Sbjct: 490 WVTIIPRDSFKYLEYKLINAKKEE 513


>gi|124026647|ref|YP_001015762.1| ribonuclease E/G [Prochlorococcus marinus str. NATL1A]
 gi|123961715|gb|ABM76498.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus
           str. NATL1A]
          Length = 640

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 128/558 (22%), Positives = 242/558 (43%), Gaps = 26/558 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  ++L GRY VL P   +G  ISR+I+   +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNIALPGRYLVLQP-YGQGVNISRRISTESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P   G+++RT      +  +  D E L++ W+ +++ + +   P L+ 
Sbjct: 141 NRLRA-LGVLVKPPSTGLLIRTEAEDICEEFLIDDLENLLKQWELIQQASESCSPPILLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD   ++++EI+V   +     K+F+          +  + D   I  + 
Sbjct: 200 RDEDFIHRILRDHTGQNLTEIVVDNSEAIGRVKNFLGKDSNEL--TIELHNDSENILEKY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   ++   +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVISSINEALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRETVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQL+LR++ G+I++DFIDM+ K++   + +    ++  D AR Q+ +++  GL+E++R
Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDTKRDQLQLLEHFTSAINGDSARPQIASLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS--------------ILRSVEEYLLQYT 515
           +R   ++ E   K     +G GY+ S +   ++              I     + L +  
Sbjct: 378 KRQGQNIYELFGKTSPNSQGQGYLPSITIQDINPTTPSEAGVINATLISGEDIQSLQETN 437

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
                ++   D+   L N++  +  +          +   I+                ++
Sbjct: 438 NKKKRINKTRDIEANLSNEENKSSTDNSKAISTD-TITEDIQKESNN-----KRKETTII 491

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-- 633
           N       +        +   + +   L    K   +   +     E++      +++  
Sbjct: 492 NINMNQNEEIVYSLMGLDPILLLEKPPLSENYKVNIIRPGKKEAREEKNNIPEDNQQKIV 551

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                +   ++ D   + + S+I+    +S        +  N  L +        N++  
Sbjct: 552 DDSISKHQNNNKDIIRLKNKSNIEQKSTNSDVKESIEEENINVALDQETNELININHNSI 611

Query: 694 IPPVSTPEMESSNSSSDP 711
                 P  +S   + DP
Sbjct: 612 SEKNELPSTDSQEVNEDP 629



 Score = 73.5 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E  R+  +L D R++EL           G+I+L  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEHLRIAALLTDERIDELIV--AQGSYQIGDIFLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVNDLGP 72


>gi|239616948|ref|YP_002940270.1| ribonuclease, Rne/Rng family [Kosmotoga olearia TBF 19.5.1]
 gi|239505779|gb|ACR79266.1| ribonuclease, Rne/Rng family [Kosmotoga olearia TBF 19.5.1]
          Length = 481

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 216/464 (46%), Gaps = 8/464 (1%)

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
           ++ +   +T +   +       + I ++  ++EV      ++       +    +VV ++
Sbjct: 1   MEITKKKRTQAIVFSSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSL 60

Query: 150 EDVK-GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           E                +     + ++  + +LVQ+ K+  G+KG  +T  +S+ GR  V
Sbjct: 61  EAAFVNIGIGKNGFLRFKDTRNNQKLEKGKKVLVQVKKDPIGSKGPQLTLKISIPGRCLV 120

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
            MP  SK   IS+KIT+  + +          +    G+I RTA     +  ++ + E L
Sbjct: 121 YMPF-SKHVGISKKITDQAE-RERLISIAKGIIENDEGIIFRTAANGVGEDTLREELENL 178

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
             +W  + E    +  P ++YEE +L++  +R+   +D+ EI+V  E  + +    +   
Sbjct: 179 RTIWKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDLWHDVVAGISKF 238

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
              +  IVR        F   GI  ++  L+   V LP+ G + I++TEA+  IDVNS  
Sbjct: 239 KSGFKPIVRY--VEEDAFLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMTVIDVNSAS 296

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           +T    + + +L TNLEAA EIARQLRLR++ G+IV+DFIDM+ + + + V   L E LK
Sbjct: 297 NTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVISLLSEELK 356

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
           KD+A   +   +  GLLEM+R+R  +++       C  C+G G I S       ++  ++
Sbjct: 357 KDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITYQRLVSDLQ 416

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
                    +  V  + ++   L  + +    +   +F   I V
Sbjct: 417 RLFKDKKIKSATVQVYQNLSGILTPEVQK---QLSKQFKREIKV 457



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 9  ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
          +S  +E R+ +L + +++E+ FE    +   GNIYL K+  V PSL+AAFV+ G  ++GF
Sbjct: 15 SSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIGIGKNGF 74

Query: 69 LPFLE 73
          L F +
Sbjct: 75 LRFKD 79


>gi|218674495|ref|ZP_03524164.1| probable ribonuclease protein [Rhizobium etli GR56]
          Length = 97

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/95 (82%), Positives = 85/95 (89%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1  MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI 95
          YGGNRHGFL F EIHPDYYQIP +DRQALL+    
Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAE 95


>gi|315022561|gb|EFT35588.1| ribonuclease G [Riemerella anatipestifer RA-YM]
          Length = 519

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 103/574 (17%), Positives = 214/574 (37%), Gaps = 63/574 (10%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++LI ++    +++ ++ D R+ EL  + +    + G+I+L K+ ++ P+L AAFV+
Sbjct: 1   MKKELLI-SNEGGASKIALIEDGRLFELHEQEQESDFVVGDIFLGKIKKLAPNLNAAFVN 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G ++  FL + ++ P Y                              +  ++   + S 
Sbjct: 60  IGYDKDAFLHYQDLGPQY-----------------------LTYRKFLNETLSKRKNDSG 96

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
            +  PI     +      + A +DVV      +  S +      +        +  R ++
Sbjct: 97  LKNFPIEKALDKNGMVDSVLAKDDVVLLQVTKEPISTKGARISTQ------VSLTGRFLV 150

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
           L+   ++   +K    +            +     G  I R +        L      L 
Sbjct: 151 LIPFDQKVSVSKKIKDSAERERLRTLIESIKPEGFGVII-RTVAEGKKVAELHNGMNQLI 209

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                     T   +  + ++             +     N+    ++ ++ ++++    
Sbjct: 210 QKW------ETCFKNIQRGKVPSKILSEEEKASAILRDNFNADFVSIICDDEDMVQ---- 259

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
                ++   +       +   +F +  +P       + +          I         
Sbjct: 260 -----EMKNYLEVIAPERKNIVEFYEHHIPLLEYYNVEKQLKQSFGKHVNI--------- 305

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRS--TREHCIEDTALQTNLEAAEEIARQLRLRD 418
                    Y++I  TEAL  IDVNSG +        ++ A   N  AA EIARQLRLRD
Sbjct: 306 ---PSSKGAYLVIEHTEALHVIDVNSGNNITAETKANKEHAFNVNRMAATEIARQLRLRD 362

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           + G+IVVDFIDM + ++ R + + LK  +K+D+A+ ++   S FGL++++RQR+RS  + 
Sbjct: 363 MGGIIVVDFIDMRDAEHRRELYEHLKNEMKRDKAKHKILPPSKFGLIQITRQRVRSETVI 422

Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            T +      G           ++    V + L+Q     + +H H  V  YL     + 
Sbjct: 423 ETKEENPNKDGEILAPVVIVEKMT---EVLKGLMQKEKGRLYLHAHPFVEAYLTKGLMSI 479

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
             ++  ++   + ++         + +      +
Sbjct: 480 QTKWYLKYKKWVTIIPRDSFKYLEYRVYNSQKQE 513


>gi|227488343|ref|ZP_03918659.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091705|gb|EEI27017.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 887

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 203/373 (54%), Gaps = 13/373 (3%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                      R+  I + +K+   +LVQ+ K+  G+KGA +T  +SLAGRY V +P   
Sbjct: 345 DIDWRQMGLGGRKRRIDQALKSGDQVLVQVSKDIVGHKGARLTMQISLAGRYLVYVP-RG 403

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +   ISRK+  P  ++ LK I   +    G G I+RTA    ++ EI  D E L  LW++
Sbjct: 404 RNAGISRKLPEPERKR-LKAILNDVIPNEG-GAIVRTAAEGVSEKEIAADVERLHSLWED 461

Query: 275 VRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + +      A        +YEE +++ R +RDL+ +D S ++V G++ Y    D++  + 
Sbjct: 462 IAQRTEEEKASKGAKPVTMYEEPDVLVRVVRDLFNEDFSTLVVEGDRAYNTVSDYVNTVA 521

Query: 330 PSYA----RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           P  A    +   +  D   +F +  I+ QL      +V LPS G +II++TEA+  IDVN
Sbjct: 522 PDLAERVVKYEAENNDGKDVFEKYRIDEQLQKALGRKVWLPSGGTLIIDRTEAMTVIDVN 581

Query: 386 SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           +G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++LK
Sbjct: 582 TGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENRDLVLRRLK 641

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           E+L +DR R QV  +++ GL++M+R+++ + +LE+    C  C G G I  +  V     
Sbjct: 642 EALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLLETFATTCEACDGRGIILHEDPVEQQEK 701

Query: 505 RSVEEYLLQYTAH 517
           R V     +  + 
Sbjct: 702 RPVYGRNKKRRSK 714



 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    S       GNIYL +V  V  S++AAF+D G  R+G L   +I
Sbjct: 287 TQIGVLEDEMLVEHFVTSNTAASQVGNIYLGRVQNVLDSMEAAFIDIGTGRNGVLYSADI 346


>gi|289178080|gb|ADC85326.1| Ribonuclease G [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 1127

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 645 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 704

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                +SRK+++    +   +       P  MGVI+RTA    ++  I +D E L   W 
Sbjct: 705 GMTG-VSRKLSDRERNR--LKSIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWA 761

Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            ++       +   P L+  E ++  R +RD++  D +++IV G+  Y   ++++  + P
Sbjct: 762 EIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAP 821

Query: 331 SYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++        +F R  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 822 DLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 881

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N   V ++L E
Sbjct: 882 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 941

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 942 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGFIVHDEPTI 996



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 588 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 647

Query: 75  HPD 77
           + D
Sbjct: 648 NWD 650


>gi|170289058|ref|YP_001739296.1| ribonuclease [Thermotoga sp. RQ2]
 gi|170176561|gb|ACB09613.1| ribonuclease, Rne/Rng family [Thermotoga sp. RQ2]
          Length = 459

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 199/393 (50%), Gaps = 14/393 (3%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
            + +++     + +K  Q +LVQ+ K+  G KG  VT  + +A R+ V+ P   K   +S
Sbjct: 59  NEAYRKTVLKGQEVKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPFK-KVIGVS 117

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           RKI +  +R+ L+ IA  L    G+GVI+RTA     + EI ++FE  +  W+ V +   
Sbjct: 118 RKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVLQKFR 177

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            S  P L+YEE + +++ I++     I ++I +           ++  + +  +      
Sbjct: 178 RSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLET----LQKYLQNLPKKPEIEY 232

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
               +F +  +  +L  L    V L S G ++I++TEAL  IDVNS   T     E+ AL
Sbjct: 233 VEGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELAL 292

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           +TN+EA EEI RQL LR++ G++V+DFI  ++ K+   +  + KE  K+D  R+++   +
Sbjct: 293 KTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFT 352

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNI 519
           N GLLE++R+R    +       C  C G G + SQ      +L+ + E L +      +
Sbjct: 353 NLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKI----LLKRIREDLKKLKDFEEV 408

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
            +  H ++  Y    KR  I + +  F V +N+
Sbjct: 409 TLKVHPNMSGYF---KREDIKKLQKEFKVKLNL 438



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
           V+ D  +EE+ F+      I G IYL ++ ++ P L+AAFV  G  R+ FL   EI+  
Sbjct: 4  AVMDDGELEEVFFDEIET--IAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINEA 61

Query: 78 Y 78
          Y
Sbjct: 62 Y 62


>gi|72382905|ref|YP_292260.1| RNAse E [Prochlorococcus marinus str. NATL2A]
 gi|72002755|gb|AAZ58557.1| RNAse E [Prochlorococcus marinus str. NATL2A]
          Length = 640

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/558 (23%), Positives = 246/558 (44%), Gaps = 26/558 (4%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I E+++ RQ +LVQ++KE  G KG  +T  ++L GRY VL P   +G  ISR+I+   +R
Sbjct: 82  ITELLEPRQKVLVQVMKEPTGTKGPRLTGNIALPGRYLVLQP-YGQGVNISRRISTESER 140

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             L+     L  P   G+++RT     ++  +  D E L++ W+ +++ + +   P L+ 
Sbjct: 141 NRLRA-LGVLVKPPSTGLLIRTEAEDISEEFLIDDLENLLKQWELIQQASESCTPPILLN 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            + + I R +RD   +++++I+V   +     K+F+          +  + D   I  + 
Sbjct: 200 RDEDFIHRILRDHTGQNLTQIVVDNSEAIGRVKNFLGKDSNEL--TIELHNDSENILEKY 257

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +   ++   +  V LPS GY+II  TEAL  IDVNSG  TR     +T L TN EAA E
Sbjct: 258 KVISSINEALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRETVLWTNCEAAIE 317

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQL+LR++ G+I++DFIDM+ K++   + +    ++  D AR Q+ +++  GL+E++R
Sbjct: 318 IGRQLKLRNIGGVIIIDFIDMDTKRDQLQLLEHFTSAINGDSARPQIASLTELGLVELTR 377

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS--------------ILRSVEEYLLQYT 515
           +R   ++ E   K     +G GY+ S +   ++              I     + L +  
Sbjct: 378 KRQGQNIYELFGKTSPNSQGQGYLPSITIQDINPTTPSEAGVINATLISGEDIQSLQESN 437

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
                ++   D+   L N++  +  +          +   I+                ++
Sbjct: 438 NKKKRINKARDIEANLSNEEHKSSTDNSKAISTD-TITEDIQKESNN-----KRKETTII 491

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-- 633
           N       +        +   + +   L    K   +   ++    E+S      +++  
Sbjct: 492 NINMNQNEEIVYSLMGLDPILLLEKPPLSENYKVNIIRPGKEETREEKSNMPEGNQQKIV 551

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
                +   ++ D   + D S+I+    +S +   +  +  N +L +        N++  
Sbjct: 552 DDSISKHQNNNKDIIRLKDKSNIEQKSTNSDEKESDEEEKINVDLDQETNELININHNSI 611

Query: 694 IPPVSTPEMESSNSSSDP 711
                 P  ES   + DP
Sbjct: 612 SEKNELPSTESQEVNEDP 629



 Score = 74.6 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 1  MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E  R+  +L D R++EL           G+I+L  V  V P + AAFV
Sbjct: 1  MPQQIVI----AEHLRIAALLTDERIDELIV--AQGSYQIGDIFLGTVENVLPGIDAAFV 54

Query: 60 DYG-GNRHGFLPFLEIHP 76
          + G   ++GF+   ++ P
Sbjct: 55 NIGESEKNGFIHVNDLGP 72


>gi|213585877|ref|ZP_03367703.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 262

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 129/259 (49%)

Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366
           +  I V     Y    +F    +P     +  Y    PIF    +E ++    + +V L 
Sbjct: 1   MDRIRVDSRLTYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYDVENEIQRALERKVELK 60

Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426
           S GY+II+QTEA+ ++D+N+G       ++DT   TN+EA + IARQLRLR+L G+I++D
Sbjct: 61  SGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIID 120

Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           FIDM  + + R V   L+++L KDR +  +   S  GL+EM+R+R R SV       C  
Sbjct: 121 FIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRKRTRESVEHVLCNECPT 180

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
           C G G +++  +V   I+R +      Y +   +V+    V   L  ++   + E E   
Sbjct: 181 CHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFV 240

Query: 547 GVSINVVIGIELADKLFYI 565
           G  + V +      + F +
Sbjct: 241 GKQVKVQVEPLYNQEQFDV 259


>gi|227542956|ref|ZP_03973005.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181178|gb|EEI62150.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 887

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 203/373 (54%), Gaps = 13/373 (3%)

Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                      R+  I + +K+   +LVQ+ K+  G+KGA +T  +SLAGRY V +P   
Sbjct: 345 DIDWRQMGLGGRKRRIDQALKSGDQVLVQVSKDIVGHKGARLTMQISLAGRYLVYVP-RG 403

Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           +   ISRK+  P  ++ LK I   +    G G I+RTA    ++ EI  D E L  LW++
Sbjct: 404 RNAGISRKLPEPERKR-LKAILNDVIPNEG-GAIVRTAAEGVSEKEIAADVERLHSLWED 461

Query: 275 VRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + +      A        +YEE +++ R +RDL+ +D S ++V G++ Y    D++  + 
Sbjct: 462 IAQRTEEEKASKGAKPVTMYEEPDVLVRVVRDLFNEDFSTLVVEGDRAYNTVSDYVNTVA 521

Query: 330 PSYA----RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           P  A    +   +  D   +F +  I+ QL      +V LPS G +II++TEA+  IDVN
Sbjct: 522 PDLAERVVKYEAENNDGKDVFEKYRIDEQLQKALGRKVWLPSGGTLIIDRTEAMTVIDVN 581

Query: 386 SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           +G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++LK
Sbjct: 582 TGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENRDLVLRRLK 641

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           E+L +DR R QV  +++ GL++M+R+++ + +LE+    C  C G G I  +  V     
Sbjct: 642 EALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLLETFATTCEACDGRGIILHEDPVEQQEK 701

Query: 505 RSVEEYLLQYTAH 517
           R V     +  + 
Sbjct: 702 RPVYGRNKKRRSK 714



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E    S       GNIYL +V  V  S++AAF+D G  R+G L   +I
Sbjct: 287 TQIGVLEDEMLVEHFVTSNTAASQVGNIYLGRVQNVLDSMEAAFIDIGTGRNGVLYSADI 346


>gi|164687843|ref|ZP_02211871.1| hypothetical protein CLOBAR_01487 [Clostridium bartlettii DSM
           16795]
 gi|164603118|gb|EDQ96583.1| hypothetical protein CLOBAR_01487 [Clostridium bartlettii DSM
           16795]
          Length = 466

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/394 (28%), Positives = 208/394 (52%), Gaps = 3/394 (0%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
           + IKN   +LVQI KE  G K   +T  +SL+GRY VL+P+  +    ++ +      + 
Sbjct: 73  DNIKNGMEVLVQINKEGVGTKAPKLTQEISLSGRYLVLIPSNDRITISNKILEEKERFRL 132

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            K           +G+I+RT   +    ++K DF+ L++    + +     + P L+Y E
Sbjct: 133 KK--IVKSFNKEKLGIIIRTEAVNCDIDKLKEDFDLLIKRHQEILKQFKLGIGPKLLYRE 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
            +L  + I+D   +DI +I+++ +  Y E K  +  +   Y + +   E+   +F    +
Sbjct: 191 LDLDTKYIKDNINEDIDKIVINDKTKYDEIKSILSNINKDYIQKLVLEENK-DVFDLYKV 249

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
             +++     +V L S GY+II +TEAL  IDVN+G+ T     E+T  +TNLEA EEIA
Sbjct: 250 SKEIEKALSKKVWLKSGGYLIIEKTEALTVIDVNTGKFTGSLSREETMYKTNLEACEEIA 309

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQL++RD+ G+I+VDFID+ +KK   ++ KKL+E+LK D+ + +V  I+  GL+E++R+R
Sbjct: 310 RQLKIRDIGGIIIVDFIDLHKKKYKENLIKKLEEALKSDKRKSEVLGITRLGLVEIARRR 369

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+     + C  CK     +S + +   + + +         +NI++     +   +
Sbjct: 370 EKDSIDSYYLRACETCKSDFSQKSINYILDDLEKEIMRVKEHTNYNNILMELKPYIYNEM 429

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           L++ +  I + + ++ ++I +     +  K   I
Sbjct: 430 LDKYKDCIKKLKNKYSINIEISKTENINQKDVKI 463



 Score = 74.2 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          K +I  S V  T+  V++ N++ EL  E    K+ K NIY   V  ++P ++AAFVD G 
Sbjct: 2  KQIIVQSLVSSTQTAVIKGNKLVELLIEDNIHKKTKSNIYRGIVKNIKPGIEAAFVDIGF 61

Query: 64 NRHGFLPFL 72
           +  +LP  
Sbjct: 62 EKMAYLPIK 70


>gi|298252878|ref|ZP_06976672.1| ribonuclease G/E [Gardnerella vaginalis 5-1]
 gi|297533242|gb|EFH72126.1| ribonuclease G/E [Gardnerella vaginalis 5-1]
          Length = 1077

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 130/582 (22%), Positives = 258/582 (44%), Gaps = 27/582 (4%)

Query: 87   QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
            + L+      +    +V +D    +  + +   +  V  I     +    S+ +A  D+ 
Sbjct: 497  ERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIG 556

Query: 147  SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
                 V   G    D+ +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 557  QARNGVLYAGEVNWDMARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 616

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            R+ VL+P+      +SRK+++    +           P  MGVI+RTA    ++  I++D
Sbjct: 617  RFLVLVPSGGMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGVIIRTAADGASEESIEKD 673

Query: 265  FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             + L++ W+ +        +   P L+  E ++  R +RD++  D  ++IV GE   +  
Sbjct: 674  LDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRI 733

Query: 322  KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
             ++++++ P     V  ++         F +  I+ QL    + +V LP+ G ++I++TE
Sbjct: 734  DEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 793

Query: 378  ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
            A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 794  AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 853

Query: 437  RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
              V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  CKG G+I   
Sbjct: 854  DLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 913

Query: 497  SSVALS------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
                 S       L+  + ++                         A +    AR   + 
Sbjct: 914  EPTVSSEYADPYALKGGDPFVKTNKYG--HGSATEQPAPVKQQGSSAEVRAKLARIAAAS 971

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
             +      +++               +     +   A + +        + +       E
Sbjct: 972  VITDAAHKSEEETQYSNFLNSDKESVSSKADETGETADAGETAETSEVAETSEADKTSEE 1031

Query: 611  SLEDIQDNIVSE------ESTGVIRKRRRRRRRRRPATDHHD 646
             +E+  ++   E      E       +   +   +  T++ D
Sbjct: 1032 LIENNLEDTTQEIAGYTSEQPAQEPAQEPMQDATQETTENDD 1073



 Score = 86.6 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL ++  V PS++AAFVD G  R+G L   E+
Sbjct: 509 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV 568

Query: 75  HPD 77
           + D
Sbjct: 569 NWD 571


>gi|330981114|gb|EGH79217.1| ribonuclease G [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 404

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/322 (36%), Positives = 184/322 (57%), Gaps = 5/322 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I  ++ + Q L+VQ+ K+  G+KGA +TT LS+  RY V MP T+    IS KI +  +R
Sbjct: 84  IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142

Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
           + LK++        G+    G ILRTA       EI  D  YL RLWD + E       P
Sbjct: 143 ERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YE+  L  R +RDL    I +I +   + +++   F+  LMP  A  +  Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+E ++    + +V L S GY++I+  EA+ +IDVN+G       +E+T  +TNLE
Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA  IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 466 EMSRQRIRSSVLESTTKVCTYC 487
           +M+R+R R S+ +   + C  C
Sbjct: 383 QMTRKRTRESLEQVLCEPCHCC 404



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|148270316|ref|YP_001244776.1| ribonuclease [Thermotoga petrophila RKU-1]
 gi|147735860|gb|ABQ47200.1| RNAse G [Thermotoga petrophila RKU-1]
          Length = 454

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 211/445 (47%), Gaps = 16/445 (3%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D     +   +E+  IA      + E I+         +   +    +        +  I
Sbjct: 2   DDGELEEIFFDEIETIAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVYRETI 61

Query: 171 --QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
             ++ +K  Q +LVQ+ K+  G KG  VTT + +A R+ V+ P   K   +SRKI +  +
Sbjct: 62  LKEQEVKEGQKILVQVKKDASGKKGPQVTTQIGIADRFVVIFPFK-KVIGVSRKIEDASE 120

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           R+ L+  A  L    G+GVI+RTA     + EI ++FE  +  W+ V +    S  P L+
Sbjct: 121 RRRLRTTAFSLRKRHGVGVIVRTAAEGVDEEEIIKNFERALEKWNQVLQKFRRSRKPKLL 180

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           +EE + +++ I++     I  +I +           ++  + +  +          +F +
Sbjct: 181 HEE-DPVEQIIKEKVNSKIDRLIYNNRSLLET----LQKYLQNLPKKPELEYVEGDLFEK 235

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
             +  ++  L    V L S G ++I++TEAL  IDVNS   T     E+ AL+TN+EA E
Sbjct: 236 FSVYERMKKLLSRTVQLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELALKTNMEAIE 295

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           EI RQL LR++ G++V+DFI  ++ K+   +  + KE  K+D  R+++   +N GLLE++
Sbjct: 296 EIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFTNLGLLEIT 355

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDV 527
           R+R    +       C  C G G + SQ      +L+ + E L +      + +  H ++
Sbjct: 356 RKRTTRPLDTLLFTRCPVCSGTGKVLSQKI----LLKRIREDLKKLKNFEEVTLKVHPNM 411

Query: 528 VLYLLNQKRATIVEYEARFGVSINV 552
             Y    KR  I + +  F V +N+
Sbjct: 412 SGYF---KREDIKKLQKEFKVKLNL 433



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79
          + D  +EE+ F+      I G IYL K+ ++ P L+AAFV  G  R+ FL   EI+  Y 
Sbjct: 1  MDDGELEEIFFDEIET--IAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVY- 57

Query: 80 QIPFSDRQALLKESNIAQ 97
                R+ +LKE  + +
Sbjct: 58 ------RETILKEQEVKE 69


>gi|217076233|ref|YP_002333949.1| cytoplasmic axial filament protein [Thermosipho africanus TCF52B]
 gi|217036086|gb|ACJ74608.1| cytoplasmic axial filament protein [Thermosipho africanus TCF52B]
          Length = 465

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 212/435 (48%), Gaps = 10/435 (2%)

Query: 110 GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC 169
            +  +    S EE     N      E+ + + +   V+  E   G        +    Y 
Sbjct: 20  ENNKLVELFSDEEKKLTGNIYLGRVEKVVNALDAIFVNIGEKKNGFLRIKDIPEKYYDYF 79

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
             + IK    +L+Q+ K+  G KG  +T  +S+AGRY V+ P  S    +S+KI +  +R
Sbjct: 80  SVKEIKEGSKILIQVKKDPTGTKGPQLTANISIAGRYLVVFPF-SNVNGVSKKIESEDER 138

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           + L +IA  +    G GV++RTA     +  I  +   L    D++           ++Y
Sbjct: 139 QRLYKIANEISNNNGFGVVIRTAAEGLNEKYIYSEAITLKEKLDDLLSNFKRKRKIQILY 198

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
            E +LI   +R+   K+++++I +  K     + ++K+    + +  +        F  +
Sbjct: 199 TEESLIDYILRERLTKEVTQVITNNIKHIEVIRKYLKI----FPKRPKIEIIDGDSFEYT 254

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +      L +  +TLPS G +II++TEAL  IDVNS   T+    ++TA +TN EA EE
Sbjct: 255 NVNKYFKELIKRTITLPSGGEIIIDKTEALTVIDVNSKHFTKGLNQQETAFKTNYEAVEE 314

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           I RQLRLR++ G++++DFIDM  ++N   + +K+ E +KKD++++++   +  GLLE+SR
Sbjct: 315 IFRQLRLRNIGGIVIIDFIDMNSEENKNKILEKVNEEIKKDKSKIEIFGFTKLGLLELSR 374

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           +R   S  E+    C  C G+G+I+S   +   I   +E       A  +I+  H  +  
Sbjct: 375 KRTIKSFFENYVSTCPVCGGSGFIQSPRFLLKEIFAKIENAP--KEAKEVIIKLHPYMKN 432

Query: 530 YLLN---QKRATIVE 541
           Y+     +KR  +  
Sbjct: 433 YIDKSELKKRKDLNY 447



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 118/361 (32%), Gaps = 14/361 (3%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M   +L+  S  +     ++ +N++ EL   S+ +K++ GNIYL +V +V  +L A FV+
Sbjct: 1   MEK-ILVLNSIEDNLHYAIIENNKLVELF--SDEEKKLTGNIYLGRVEKVVNALDAIFVN 57

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++GFL   +I   YY     D  ++ +    ++   +   D        +  + S+
Sbjct: 58  IGEKKNGFLRIKDIPEKYY-----DYFSVKEIKEGSKILIQVKKDPTGTKGPQLTANISI 112

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
                +          S    + D    +  +      +          I+   +     
Sbjct: 113 AGRYLVVFPFSNVNGVSKKIESEDERQRLYKIANEISNNNGF----GVVIRTAAEGLNEK 168

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
            +         K   + +      +  +L    S  + I R+       + +    + +E
Sbjct: 169 YIYSEAITLKEKLDDLLSNFKRKRKIQILYTEESLIDYILRERLTKEVTQVITNNIKHIE 228

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
           V      I               ++  + + +  + +  +   +   +  +       I 
Sbjct: 229 VIRKYLKIFPKRPKIEIIDGDSFEYTNVNKYFKELIKRTITLPSGGEIIIDKTEALTVI- 287

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
           D+  K  ++ +   E  ++   + ++ +     R+          F     E   + + +
Sbjct: 288 DVNSKHFTKGLNQQETAFKTNYEAVEEI-FRQLRLRNIGGIVIIDFIDMNSEENKNKILE 346

Query: 361 T 361
            
Sbjct: 347 K 347


>gi|15644354|ref|NP_229406.1| cytoplasmic axial filament protein, putative [Thermotoga maritima
           MSB8]
 gi|4982177|gb|AAD36673.1|AE001804_17 cytoplasmic axial filament protein, putative [Thermotoga maritima
           MSB8]
          Length = 454

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 199/393 (50%), Gaps = 14/393 (3%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
            + +++     + +K  Q +LVQ+ K+  G KG  VT  + +A R+ V+ P   K   +S
Sbjct: 54  NEAYRKTVLKGQEVKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPFK-KVIGVS 112

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           RKI +  +R+ L+ IA  L    G+GVI+RTA     + EI ++FE  +  W+ V +   
Sbjct: 113 RKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVLQKFR 172

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            S  P L+YEE + +++ I++     I ++I +           ++  + +  +      
Sbjct: 173 RSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLET----LQKYLQNLPKKPEIEY 227

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
               +F +  +  +L  L    V L S G ++I++TEAL  IDVNS   T     E+ AL
Sbjct: 228 VEGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELAL 287

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           +TN+EA EEI RQL LR++ G++V+DFI  ++ K+   +  + KE  K+D  R+++   +
Sbjct: 288 KTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFT 347

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNI 519
           N GLLE++R+R    +       C  C G G + SQ      +L+ + E L +      +
Sbjct: 348 NLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKI----LLKRIREDLKKLKDFEEV 403

Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
            +  H ++  Y    KR  I + +  F V +N+
Sbjct: 404 TLKVHPNMSGYF---KREDIKKLQKEFKVKLNL 433



 Score = 71.9 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78
          + D  +EE+ F+      I G IYL ++ ++ P L+AAFV  G  R+ FL   EI+  Y
Sbjct: 1  MDDGELEEVFFDEIET--IAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINEAY 57


>gi|296104960|ref|YP_003615106.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059419|gb|ADF64157.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 257

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 128/254 (50%)

Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371
           +     Y    +F    +P    ++  Y    PIF    +E ++    + +V L S GY+
Sbjct: 1   MDSRLTYEALLEFTAEYIPEMPGLLEHYTGRQPIFDLYDVENEIQRALERKVELKSGGYL 60

Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431
           II+QTEA+ ++D+N+G       ++DT   TN+EA + IARQLRLR+L G+I++DFIDM 
Sbjct: 61  IIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 120

Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
            + + R V   L+++L KDR +  +   S  GL+EM+R+R R SV       C  C G G
Sbjct: 121 NEDHRRRVLHSLEQALSKDRVKTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRG 180

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +++  +V   I+R +      Y +   +V+    V   L  ++   + E E   G  + 
Sbjct: 181 TVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVK 240

Query: 552 VVIGIELADKLFYI 565
           V I      + F +
Sbjct: 241 VQIEPLYNQEQFDV 254


>gi|270284329|ref|ZP_06193944.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium
           gallicum DSM 20093]
 gi|270276653|gb|EFA22507.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium
           gallicum DSM 20093]
          Length = 898

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 113/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   ++   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 468 GEVNWDTTRLEGQPRRIEHAFRSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 527

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                  +        ++  +       P  MGVI+RTA    ++  I +D E LM  W+
Sbjct: 528 GMTGVSRKL---SEHERSRLKSIVAKVAPKDMGVIIRTAAEGASEEAITKDLENLMHQWE 584

Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           ++        N   P L+  E ++  R +RD++  D S++IV GE  Y    +++  + P
Sbjct: 585 HITAKREEFRNGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGETVYERIAEYLDTMAP 644

Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + Q++         F +  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 645 DLKAKLEQWDPAEHQGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 704

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   +   +E+T    NLEAAEEIARQLRLRD+ G++++DF+DM    N   V ++L E
Sbjct: 705 GRFIGKGRSLEETVTACNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLLE 764

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 765 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFIVHDEPTV 819



 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 411 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 470

Query: 75  HPD 77
           + D
Sbjct: 471 NWD 473


>gi|297243303|ref|ZP_06927237.1| ribonuclease G/E [Gardnerella vaginalis AMD]
 gi|296888710|gb|EFH27448.1| ribonuclease G/E [Gardnerella vaginalis AMD]
          Length = 1079

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 135/614 (21%), Positives = 270/614 (43%), Gaps = 46/614 (7%)

Query: 87   QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
            + L+      +    +V +D    +  + +   +  V  I     +    S+ +A  D+ 
Sbjct: 491  ERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIG 550

Query: 147  SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
                 V   G    D+ +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 551  QARNGVLYAGEVNWDMARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 610

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            R+ VL+P+      +SRK+++    +           P  MGVI+RTA    ++  I++D
Sbjct: 611  RFLVLVPSGGMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGVIIRTAADGASEESIEKD 667

Query: 265  FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             + L++ W+ +        +   P L+  E ++  R +RD++  D  ++IV GE   +  
Sbjct: 668  LDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRI 727

Query: 322  KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
             ++++++ P     V  ++         F +  I+ QL    + +V LP+ G ++I++TE
Sbjct: 728  DEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 787

Query: 378  ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
            A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 788  AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 847

Query: 437  RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
              V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  CKG G+I   
Sbjct: 848  DLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 907

Query: 497  SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-----ARFGVSIN 551
                              ++     +       ++   K       E      + G S  
Sbjct: 908  EPTV--------------SSEYADPYALKGGDPFVKTNKYGHGSATEQPAPVKQQGSSAE 953

Query: 552  VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
            V            + + +    + +  HK   ++Q  ++  + +     +A      +++
Sbjct: 954  VRA---------KLARIAAASVITDAAHKSEEETQYSNFLNSDKESISSKADETGETADA 1004

Query: 612  LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
             E  + + V+E S                         +++ ++ Q   + + D   EP 
Sbjct: 1005 GETAETSEVAETSEADKTSEEL-----VENNLEDTTQEIAEYTAEQPTQEPAQDTTQEPM 1059

Query: 672  DITNHNLLENGAHG 685
                    +     
Sbjct: 1060 QDATQETTQETTEN 1073



 Score = 86.2 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL ++  V PS++AAFVD G  R+G L   E+
Sbjct: 503 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV 562

Query: 75  HPD 77
           + D
Sbjct: 563 NWD 565


>gi|283798004|ref|ZP_06347157.1| cytoplasmic axial filament protein [Clostridium sp. M62/1]
 gi|291074307|gb|EFE11671.1| cytoplasmic axial filament protein [Clostridium sp. M62/1]
          Length = 441

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 189/480 (39%), Gaps = 57/480 (11%)

Query: 2   ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           +NK+LI   + +     +  D +   L+ E    + I GNIY+ KV  +  ++ +AFVD 
Sbjct: 5   SNKLLITRWNGQIL-TALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAFVDL 63

Query: 62  GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
           G  + G          YY                                          
Sbjct: 64  GSGQIG----------YY------------------------------------------ 71

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181
                      T+E +   A N   +  E+                   + + K    ++
Sbjct: 72  -SLKENKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKERLPKAGDEII 130

Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241
           VQ+ ++    K   +T+ L+  G+Y VL    ++     +        K   +     + 
Sbjct: 131 VQVERDAVKTKDPVLTSNLNFTGKYLVLTLGKNQIGFSGKIRDGA--WKESLKKILEEKK 188

Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301
               G+I+RT         I R+ E L      +   A       L+         +IRD
Sbjct: 189 DDSFGIIVRTNAREADIQSILRELELLKERKSRLFATAGWRTCYSLLSSSEPSYVNSIRD 248

Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360
            Y +++  I+      Y   + +M+        ++    +   P+     ++  ++    
Sbjct: 249 TYAENLEAIVTDDRDCYDALRTYMEENQREDLEKLSFYEDTMVPLAKLYSLDTAMEQALG 308

Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
             V L S GY++I  TEAL  IDVN+G+   +    +T L+ N EAA EIARQ++LR+L+
Sbjct: 309 KHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVEIARQMQLRNLS 368

Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           G+I+VDFIDM+  ++ + + + L+  L +D  +  +  ++  GL+E++R++IR  + E  
Sbjct: 369 GIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITRKKIRRPLAEQV 428


>gi|163782370|ref|ZP_02177368.1| cytoplasmic axial filament protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882403|gb|EDP75909.1| cytoplasmic axial filament protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 466

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 130/457 (28%), Positives = 214/457 (46%), Gaps = 23/457 (5%)

Query: 89  LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148
           LLKE  I++   E        G +         +    A       +E+ +       + 
Sbjct: 18  LLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDIGIGKEAYLPLKAYENTA 77

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           +E+ +                   + +    +LVQ+ +E   +KGA VT  +S+ G++ V
Sbjct: 78  LEEDES----------------CPLPEEGSEILVQMKREPIEDKGAKVTCRISIPGKFLV 121

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
            +P + K    S+           +   R L+     GVI+RT+    T+ E+  + + L
Sbjct: 122 YLPTSKKVFVSSKIEDENRRAFFKELFERALD---EEGVIVRTSAEFATEEELLAELQKL 178

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
              W  ++E +  S+   LVYEE     + +RD +  D+SEIIV   + + E    ++  
Sbjct: 179 RNTWKEIKERSA-SIKQGLVYEEVPAYVQLVRDYWN-DVSEIIVDDRELWSELLAELESY 236

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
            P     VR  ++    F + G++  L  L    V L + GY+II +TEA+  IDVNSG 
Sbjct: 237 FPELVGKVRYVKNISVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAMTVIDVNSGS 296

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
                 +ED ALQTNLEAAEEI RQ++LRD+ G++++DFIDM+ KKN   + K++KE   
Sbjct: 297 G-CGDTLEDNALQTNLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKLVKRVKELFA 355

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
            + ++V V  I++ GLLE++R++   SV    +  C YCKG GYI+S   V   I + + 
Sbjct: 356 DEGSKVHVYGITHLGLLELTRKKETPSVTRLLSINCPYCKGKGYIKSPEVVLYEIEKEIN 415

Query: 509 EYLLQYTAHNIIVHTHSDVVLYL-LNQKRATIVEYEA 544
            +  +Y    +       V   +  +  R  +   E 
Sbjct: 416 YFKGRYLEVRVNPALKERVENLIEKSNMRQWVSVKEE 452



 Score = 61.5 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I AS        +L++  + E+  E   KK++ G+I+  +V R   SL  AFVD
Sbjct: 1  MDVRLIISASRNLVLTF-LLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVD 59

Query: 61 YGGNRHGFLPFL 72
           G  +  +LP  
Sbjct: 60 IGIGKEAYLPLK 71


>gi|307250032|ref|ZP_07532000.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857954|gb|EFM90042.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 241

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 1/238 (0%)

Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           MP     V  Y     +F   G+E  +       V L S GY+II QTEA+ +ID+N+G 
Sbjct: 1   MPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGA 60

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
                 +  T   TN+EA + IA QL+LR+L G+I++DFIDM+E+++   V + L+E+LK
Sbjct: 61  FVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALK 120

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508
            DR +  V   +  GL+EM+R+R R S+       C  CKG G I++  +V   ILR + 
Sbjct: 121 GDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCYEILREIV 180

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELADKLFYI 565
                +    + V+   +V  YL+N++  A+I E EA  G  I + +        F +
Sbjct: 181 RVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKKIEIKLEPYYHQDQFDV 238


>gi|300775503|ref|ZP_07085364.1| ribonuclease E [Chryseobacterium gleum ATCC 35910]
 gi|300505530|gb|EFK36667.1| ribonuclease E [Chryseobacterium gleum ATCC 35910]
          Length = 519

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 213/434 (49%), Gaps = 9/434 (2%)

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
            D +S  +        ++  +  +   + +VI    ++L+QI KE    KG  ++T +SL
Sbjct: 85  KDTISKKQSTSSLKNFEIQPEIDKNGTVDKVIAKDDLVLLQITKEPISTKGPRISTQISL 144

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
            GR+ VL+P  +K  +IS+KI +  +++ L+ +   ++   G GVI+RT    +   ++ 
Sbjct: 145 TGRFLVLIPFDNK-VSISKKIRSSEEKERLRTLIDSIKPE-GFGVIIRTVAEGKKVADLH 202

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
            D   L++ W++  +    +  P  V  E +     +RD + +D   II   E+   E K
Sbjct: 203 NDMNQLVQKWESTFKNIQRNKVPSKVLSEEDKASAILRDNFNQDFVNIICDDEQMVNEMK 262

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS--RGYVIINQTEALV 380
           ++++++ P    IV+ Y+   P+     +E QL       V +PS    Y++I  TEAL 
Sbjct: 263 NYIEVIAPEKKNIVQFYDSHIPLLEYYNVEKQLKQSFGKHVNIPSSKGAYLVIEHTEALH 322

Query: 381 SIDVNSGRS--TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438
            +DVNSG +  T     ++ AL+ N  AA EIARQLRLRD+ G+IV+DFIDM    + R 
Sbjct: 323 VVDVNSGNNITTGTAVNKEHALKVNKMAATEIARQLRLRDMGGIIVIDFIDMPNSDHRRD 382

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           + + LKE +K+D+AR ++   S FGL++++RQR R      T +      G   I +   
Sbjct: 383 LYEHLKEEMKRDKARHKILPPSKFGLIQITRQRNRPEKQIETKEENPNKDGE--IVAPIV 440

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
           +   +  ++   L +     I +H H  V  YL    ++  +++  ++   + +V     
Sbjct: 441 IVERMGETLRNILQKEKGK-IYLHVHPFVEAYLTKGIKSIQMKWFMKYKKWVTIVPRDSF 499

Query: 559 ADKLFYIEKGSPVQ 572
               + I      +
Sbjct: 500 KYLEYKIYNAKKEE 513



 Score = 95.8 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 45/76 (59%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K LI +   + T++ +L D R+ EL  + +    I G++++ KV ++ P+L AAFV+ G
Sbjct: 2  KKELIVSHEDDLTKIALLEDGRLCELHEQEDKSDFIVGDLFIGKVKKLAPNLNAAFVNIG 61

Query: 63 GNRHGFLPFLEIHPDY 78
           ++  FL + ++ P Y
Sbjct: 62 YDKDAFLHYQDLGPQY 77


>gi|281412622|ref|YP_003346701.1| ribonuclease, Rne/Rng family [Thermotoga naphthophila RKU-10]
 gi|281373725|gb|ADA67287.1| ribonuclease, Rne/Rng family [Thermotoga naphthophila RKU-10]
          Length = 454

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 212/445 (47%), Gaps = 16/445 (3%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           D     +   +E+  IA      + E I+         +   +    +        +  I
Sbjct: 2   DDGELEEIFFDEIETIAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVYRETI 61

Query: 171 --QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
             ++ +K  Q +LVQ+ K+  G KG  VTT + +A R+ V+ P   K   +SRKI +  +
Sbjct: 62  LKEQEVKEGQKILVQVKKDASGKKGPQVTTQIGIADRFVVIFPFK-KVIGVSRKIEDASE 120

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           R+ L+  A  L    G+GVI+RTA     + EI ++FE  +  W+ V +    S  P L+
Sbjct: 121 RRRLRTTAFSLRKRHGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVLQKFRRSRKPKLL 180

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
           +EE + +++ I++     I  +I +           ++  + +  +          +F +
Sbjct: 181 HEE-DPVEQIIKEKVNSKIDRLIYNNRSLLET----LQKYLQNLPKKPELEYVEGDLFEK 235

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
             +  ++  L    V L S G ++I++TEAL  IDVNS   T     E+ AL+TN+EA E
Sbjct: 236 FSVYERMKKLLSRTVQLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELALKTNMEAIE 295

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           EI RQL LR++ G++V+DFI  ++ K+   +  + KE  K+D  R+++   +N GLLE++
Sbjct: 296 EIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFTNLGLLEIT 355

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDV 527
           R+R    +       C  C G G + SQ      +L+ + E L +      +I+  H ++
Sbjct: 356 RKRTTRPLDTLLFTRCPVCSGTGKVFSQKI----LLKRIREDLKKLKNFEEVILKVHPNM 411

Query: 528 VLYLLNQKRATIVEYEARFGVSINV 552
             Y    K+  + + +  F V +N+
Sbjct: 412 SGYF---KKEDLEKLQKEFKVKLNL 433



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79
          + D  +EE+ F+      I G IYL K+ ++ P L+AAFV  G  R+ FL   EI+  Y 
Sbjct: 1  MDDGELEEIFFDEIET--IAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVY- 57

Query: 80 QIPFSDRQALLKESNIAQ 97
                R+ +LKE  + +
Sbjct: 58 ------RETILKEQEVKE 69


>gi|4689475|gb|AAD27911.1| putative ribonuclease E [Arabidopsis thaliana]
          Length = 502

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 184/372 (49%), Gaps = 12/372 (3%)

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           ++      P   P            ++    ++VQ+VKE  G KG  +T Y  L  R+ V
Sbjct: 112 MDIKSNREPFIFPPFCDGSKKQAADVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWV 171

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           L+    +   +S+KI+     +   ++      P G G+ +RT  A  +  E+++D + L
Sbjct: 172 LLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDGL 228

Query: 269 MRLWDNVRELALNS-------VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           +  W N+ + A ++              E+     +  R +    +   I+S      + 
Sbjct: 229 LLTWKNITDEAKSAALAADEGPFQRCYIEQWVKHYQLCRTISMTRLYIQIISLTSISLQV 288

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
             +++ + P     V  ++   P+F    IE +++ +    V L + G ++I QTEALVS
Sbjct: 289 THYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVS 348

Query: 382 IDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
           IDVN G     + +  E   L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ N R V
Sbjct: 349 IDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLV 408

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            +++K+++++DR+ V+V  +S  GL+E++R+R+R SV    ++ C+ C   G + +  + 
Sbjct: 409 YEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETT 468

Query: 500 ALSILRSVEEYL 511
              I + +   L
Sbjct: 469 FSKIEQEICRQL 480



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +LI++S     R+ VL   ++ EL  E         ++YL  +T+  P +  AFV+ G  
Sbjct: 48  ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 107

Query: 65  RHGFLPFLEIHPD---YYQIPFSD 85
           RH F+   +I  +   +   PF D
Sbjct: 108 RHSFM---DIKSNREPFIFPPFCD 128


>gi|307297973|ref|ZP_07577777.1| ribonuclease, Rne/Rng family [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916059|gb|EFN46442.1| ribonuclease, Rne/Rng family [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 490

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 108/436 (24%), Positives = 192/436 (44%), Gaps = 4/436 (0%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           +      ++  D   E      +    T    +    N V S                  
Sbjct: 18  EDEVRIASLDGDQLEEIFFEDMDSESVTGNIYLGKVENVVPSLEAAFVNIGIGRNAFLRF 77

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +    Q  ++    +LVQ+ K+  G+KG  +T  +S+ GR  V  P +       +    
Sbjct: 78  KDASGQPKLEKNNKVLVQVSKDPIGSKGPQITLKVSIPGRSLVYTPFSKHIGISKKITDQ 137

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
              ++          +    GVI RTA        IK + E L   W+ + E    S  P
Sbjct: 138 QERQR--LTAVAKSTLENKEGVIFRTAAFGVGDETIKEELESLRTNWNQICETFRRSRKP 195

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            ++YEE + ++  +R+   ++  EI+V  E+ + +    +      +  +VR  E     
Sbjct: 196 KILYEEPSFVEYILRERLTENTKEIVVDSEELWHDVVAGISKFKSGFKPVVRYVEGD--A 253

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F    +  ++  L+   V+LP  G + I++TEA+  IDVNS  +   + + +T+L TNLE
Sbjct: 254 FASEEVYEKMKILYTRMVSLPGGGNIYIDRTEAMTVIDVNSASNVSGNDVSETSLNTNLE 313

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA EIARQL+LR++ G++V+DFIDM+  ++ + +   L    KKD+AR  +   +  GLL
Sbjct: 314 AASEIARQLKLRNIGGIVVIDFIDMKSDEDRQKIISSLTGEFKKDKARTMIMGFTRLGLL 373

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EM+R+R  +++       C  CKG G I S  +V   +L+ +       T  +  V  + 
Sbjct: 374 EMTRKRSSAAIGSKLYSSCPICKGTGRIESPRAVYQRLLKDLARGFEDETISSATVQVYQ 433

Query: 526 DVVLYLLNQKRATIVE 541
           ++   L  + +  + +
Sbjct: 434 NMSGILTPENQKNLAK 449



 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 13 EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72
          +E R+  L  +++EE+ FE    + + GNIYL KV  V PSL+AAFV+ G  R+ FL F 
Sbjct: 19 DEVRIASLDGDQLEEIFFEDMDSESVTGNIYLGKVENVVPSLEAAFVNIGIGRNAFLRFK 78

Query: 73 E 73
          +
Sbjct: 79 D 79


>gi|183601868|ref|ZP_02963237.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682782|ref|YP_002469165.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190358|ref|YP_002967752.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195764|ref|YP_002969319.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218753|gb|EDT89395.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620432|gb|ACL28589.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248750|gb|ACS45690.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250318|gb|ACS47257.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793345|gb|ADG32880.1| ribonuclease G [Bifidobacterium animalis subsp. lactis V9]
          Length = 1028

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 11/355 (3%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
           G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAGR+ VL+P+ 
Sbjct: 546 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 605

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                +SRK+++    +   +       P  MGVI+RTA    ++  I +D E L   W 
Sbjct: 606 GMTG-VSRKLSDRERNR--LKSIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWA 662

Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
            ++       +   P L+  E ++  R +RD++  D +++IV G+  Y   ++++  + P
Sbjct: 663 EIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAP 722

Query: 331 SYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                + +++        +F R  I+ QL    + +V LPS G ++I++TEA+ +IDVN+
Sbjct: 723 DLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 782

Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           GR   +   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N   V ++L E
Sbjct: 783 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 842

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500
            L +DR + QV  +++ GL++M+R+RI   ++E+ ++ C  CKG G+I       
Sbjct: 843 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGFIVHDEPTI 897



 Score = 87.3 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 489 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 548

Query: 75  HPD 77
           + D
Sbjct: 549 NWD 551


>gi|296118763|ref|ZP_06837339.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968252|gb|EFG81501.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 1374

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 143/579 (24%), Positives = 237/579 (40%), Gaps = 25/579 (4%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G           R   I++ +K+   +LVQ+ K+  G+KG  +TT +SL GR+ V +P  
Sbjct: 585  GEVNWRQAGLGGRARKIEQAMKSGDQVLVQVAKDPVGHKGPRLTTQVSLPGRFLVYVPG- 643

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   ISRK+  P  ++ L+EI   +    G G I+RTA  +  +  I  D   L   W+
Sbjct: 644  GRNAGISRKLPAPERKR-LREILEKVVPEQG-GAIIRTAAENVAEEAIAADVNRLHDTWN 701

Query: 274  N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
                   +E A     P  +YEE  ++ + +RDL+ +D   ++V G++ Y     ++  L
Sbjct: 702  EIKEAAEKEKASKGTEPVALYEEPQMLVKVVRDLFNEDFDRLVVDGKRPYEVVSSYVNRL 761

Query: 329  MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
             P  A  V +Y          F    I+ QL      +V LPS G ++I++TEA+  +DV
Sbjct: 762  APELADRVSRYNRADNGGIDAFETYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVVDV 821

Query: 385  NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
            N+G+ T     +E+T  + NLEAAEEI RQ+RLRDL G+IVVDFIDM   +N   V ++L
Sbjct: 822  NTGKFTGTGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRL 881

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            KE+L +DR R QV  +++ GL++M+R+R+ S +LE  +  C  C+G G I  +  V    
Sbjct: 882  KEALGRDRTRHQVSEVTSLGLVQMTRKRLGSGLLEIFSTECEVCQGRGLILHEDPVEEDP 941

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-- 561
              + +               H D   +    K A   E E             +      
Sbjct: 942  SEAHDHRHDARDDKRRSAKKHRD---HTRQDKHAHKDESEEAHDEQ---ASDEDKQTPTE 995

Query: 562  ----LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
                       S  ++  +  H         S  ++ +   +D     +  S  +E+   
Sbjct: 996  SGGRRKARRSSSQRRSQDSRRHDSSRHDARRSDKRSDDSSLEDLIAGIVVDSSQVEEEAQ 1055

Query: 618  NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                 +++    +        R  +        + VS      D     Y +       +
Sbjct: 1056 RDTKSDNSVTDIESIAYAASDRAESLDDVGEFSTYVSEDSADADTGGRSYEQALKEYEQS 1115

Query: 678  LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                         D           E   ++     +  
Sbjct: 1116 PRRKRKTRGNSRSDYPPRREDFASSEDRGTTQRDTSQSD 1154



 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 11  HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
           H   T+V VL D  + E     E    I GNIYL +V  V PS++AAF+D G  R+G L 
Sbjct: 524 HGNITQVGVLEDGMLVEHFVTDETNTSIIGNIYLGRVQNVLPSMEAAFIDIGTGRNGVLY 583

Query: 71  FLEIHP 76
             E++ 
Sbjct: 584 AGEVNW 589


>gi|228910281|ref|ZP_04074098.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 200]
 gi|228849341|gb|EEM94178.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 200]
          Length = 462

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/409 (26%), Positives = 193/409 (47%), Gaps = 21/409 (5%)

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N     
Sbjct: 75  CYRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DQMRAVSRKIKNNKR-- 131

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
             ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++ 
Sbjct: 132 --RQQLLQIEVEGTGGYIFRSASEKGAIEEIQAEMQMLQQLYEELQRKEGQGKAPLLLHR 189

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
               + R  ++   + I +++V      +E ++ +     S+      Y +   +F   G
Sbjct: 190 PATFLDRVFQENPIETIEKVVVDTRSIVKELEENIGKEKVSF------YNEKSSMFNHFG 243

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           IE +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEI
Sbjct: 244 IEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEI 303

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+
Sbjct: 304 ARQLRLRDIGGMILIDFINMKRREDKEMVRECLMAAMQNDRTYTRVLGFTELGILEMTRK 363

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    D+   
Sbjct: 364 RKKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPKDLQKQ 422

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
            L        E +      I          + + I +      +V    
Sbjct: 423 FLQ------KELQKNIPFEIYFKDD---MIEKYAIVRFGSKTEIVERKK 462



 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY  ++ R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSCY 76


>gi|285808218|gb|ADC35752.1| ribonuclease Rne/Rng family protein [uncultured bacterium 293]
          Length = 728

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 164/419 (39%), Gaps = 68/419 (16%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M  ++++ A+  +ETRV +L D    E   E E  +   GNIY  +VTRV P +Q+AFVD
Sbjct: 1   MNKELIVSAT-SQETRVALLEDGLAAEXFIEREAHRGHVGNIYKGRVTRVLPGMQSAFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  R  FL               D   LL E    +             +  +P +  L
Sbjct: 60  IGLERDAFLH------------VEDVLELLGEEPSTEEGEAPPVAARPEAERELPIEERL 107

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180
           +E   +     +    +                 G+          +Y +         +
Sbjct: 108 KEGQEVVVQVVKEPLGT----------------KGARITSHISLPGRYLVFMPTVEHVGV 151

Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240
             +IV+++   +         L G    L      G                        
Sbjct: 152 SRKIVEDDERRR---------LKGILKELRTQRGGGG----------------------- 179

Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300
                 +I RT    + + +++RD  YL R WD VR        P L++ E +L++R +R
Sbjct: 180 ------LIARTVSLGKPREDLERDALYLSRAWDEVRARGARDRPPALLHREPSLVQRLLR 233

Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF-FRSGIEVQLDSLH 359
           DL  +DIS+I +   K Y+   + +  L P     VR ++          G+  +++   
Sbjct: 234 DLLNEDISQIRIDSHKEYQRTVELVSQLAPELLPRVRHHQSNGAGILEEHGVAAEIERAL 293

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
           + +V L S GY++INQTEALV+IDVN+GR T +  +E+T L        ZJ     LRD
Sbjct: 294 KPKVWLESGGYIVINQTEALVAIDVNTGRYTGKRDLEETILXXXXXXVXZJVXXXXLRD 352


>gi|89098979|ref|ZP_01171859.1| cytosolic axial filament protein [Bacillus sp. NRRL B-14911]
 gi|89086383|gb|EAR65504.1| cytosolic axial filament protein [Bacillus sp. NRRL B-14911]
          Length = 492

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 102/408 (25%), Positives = 199/408 (48%), Gaps = 10/408 (2%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I   ++  + LLVQ+ K+  G KG  +T  +   G   + MP   +   +SRKI     R
Sbjct: 91  ISSFVREGEKLLVQVEKDAAGTKGPRLTNVIEFQGEKLIYMPF-GRYVAVSRKIEKDSAR 149

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           + L+ +   L+     G+I RT+ A  ++ + +++ E L      + + A +   P  + 
Sbjct: 150 EELRTLGMKLKEE-EEGLIFRTSAAGASEEDFQKELEELRAEHRELAKKAASVKKPAKLA 208

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
           E+   ++ A  ++      E++V      +      KL   +   +VR Y +   IF   
Sbjct: 209 EKETFLEEAAAEMARLGAGEVVVDDLAVKQ------KLEKAAAESVVRYYNNKESIFSAY 262

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            ++ ++D   +  V L +  Y+I ++ EAL  IDVN+G+ +    + DT L+TN  AA E
Sbjct: 263 NLDQEIDRALKKIVWLDNGAYLIFDEAEALTVIDVNTGKYSGRENLRDTVLRTNEWAAAE 322

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
            ARQ+RLRD+ G+I++DFIDM+E+++ + + + +++ L+KD  R ++   +  G+L+++R
Sbjct: 323 AARQIRLRDIGGMILIDFIDMKEERDRQHISRVMEKELRKDERRTRIVGFTPLGILQITR 382

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
           ++ R+++ ES T  CT C+G G + S  + A  + R + E          ++   +DV+ 
Sbjct: 383 KKTRAALSESLTVKCTACEGTGRMVSAETAAFRLEREIWEM-RGSDYEAALIRLSADVLD 441

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
               ++       EA  G+ +            + I +   ++ +   
Sbjct: 442 VFSGEQGIHRKRLEATCGLRLFFAAEDS-RIPFYEIRQLGSLKEIEAK 488



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 3  NKMLID-ASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           K++I+ A+   E R  VL    + E+L  +        G+IYL  V +V P + AAFV+
Sbjct: 2  KKLVINYATR--EKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVE 59

Query: 61 YGGNRHGFLP 70
           G  + GFL 
Sbjct: 60 IGEEKSGFLH 69


>gi|157363037|ref|YP_001469804.1| ribonuclease [Thermotoga lettingae TMO]
 gi|157313641|gb|ABV32740.1| ribonuclease, Rne/Rng family [Thermotoga lettingae TMO]
          Length = 470

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 202/437 (46%), Gaps = 7/437 (1%)

Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160
           E   +     D  +    S E+ +   N      E+ I   N   V+   +  G      
Sbjct: 11  EEKVNVAILSDGVLQEIFSEEDESLSGNIYVGRIEKIIPGLNAAFVNIGGNRNGFLKLTD 70

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
             K       +  +K    +LVQ+  +  G KG  +T  +SLAGR+ V  P  SK   +S
Sbjct: 71  ITKQYISEVTKSPVKEGIKILVQVKHDAIGTKGPQLTGKISLAGRFLVYFP-LSKVRGVS 129

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           +K+  P +R  L+E++R L      GV++RTA     +  +  +F  L   W  V +   
Sbjct: 130 KKVQEPKERVRLQELSRSL--AKNDGVVIRTAAEFVPEEYVAEEFNQLKSEWRKVLQSFK 187

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
            +    L+  E   +   +R+   KDI E+ V+  + Y +    +K +    A+    Y 
Sbjct: 188 RARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYEK----VKEVSKRLAKKPMIYF 243

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
               +F +  I  Q+  L +  + LPS GY+ ++ TEA+   DVNS     E    D A 
Sbjct: 244 FEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAMTVFDVNSASFVSEKNHADLAY 303

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           +TN+EAA EIARQLRLR++ G+++VDFIDM  K     + K+L+++++ D A +++   +
Sbjct: 304 KTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRLTKELQQAIRNDSAHIELIGFT 363

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
             GLLEM+R+R   S+ +     C  CKG G + S   V   ++  + +        ++ 
Sbjct: 364 KLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRVVSPHIVVRRVINELSKIENISEYSSVK 423

Query: 521 VHTHSDVVLYLLNQKRA 537
           V  H  +  Y    K++
Sbjct: 424 VILHQRLSGYTEKIKKS 440



 Score = 99.3 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MAN+++I+    E+  V +L D  ++E+  E    + + GNIY+ ++ ++ P L AAFV+
Sbjct: 1  MANQLVINI-QEEKVNVAILSDGVLQEIFSE--EDESLSGNIYVGRIEKIIPGLNAAFVN 57

Query: 61 YGGNRHGFLPFLEIHPDY 78
           GGNR+GFL   +I   Y
Sbjct: 58 IGGNRNGFLKLTDITKQY 75


>gi|126698755|ref|YP_001087652.1| ribonuclease g [Clostridium difficile 630]
 gi|255100174|ref|ZP_05329151.1| ribonuclease g [Clostridium difficile QCD-63q42]
 gi|255306063|ref|ZP_05350235.1| ribonuclease g [Clostridium difficile ATCC 43255]
 gi|115250192|emb|CAJ68013.1| Ribonuclease G (RNase G) (Cytoplasmic axial filament protein)
           [Clostridium difficile]
          Length = 473

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 199/387 (51%), Gaps = 3/387 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K+ Q +LVQI KEE G KGA + T +S++GRY V +P+  +    ++        +  K 
Sbjct: 76  KSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKK- 134

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                     +G+I+RT     T  EIK+D E L   ++N+ +     + P L+Y+  + 
Sbjct: 135 -ITKAVNKENLGLIIRTEAQGCTHDEIKKDIEELKLKYENILKEYKLGIGPKLLYKSLDF 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             + ++D    DI  II +    Y E K  ++ +  +Y   +   E+   +F    IE +
Sbjct: 194 ATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCL-EENRDVFDLYRIESK 252

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++ L   +V L S GY+II +TEAL  IDVN+G+      +++T  +TNLEAA+EI RQL
Sbjct: 253 IEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQL 312

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           R+RD+AG+I++DFIDM +KK+ + +   L+E   KD+ + +V  ++  GL+E++R+R + 
Sbjct: 313 RIRDIAGIIIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKE 372

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ +     C  C G   I+S   +  SI + +          NI+V  +  +   +   
Sbjct: 373 SIDKYYLMSCPCCDGEQTIKSVHYILDSIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEY 432

Query: 535 KRATIVEYEARFGVSINVVIGIELADK 561
               I +   ++ + I++     L   
Sbjct: 433 YMDIIDKIGEKYNIKISLNANSTLKHN 459



 Score = 70.4 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I++    + +  VL D R+ EL  E    K+   NIY   V +V P ++A FVD G
Sbjct: 2  KKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIG 60

Query: 63 GNRHGFL 69
            +  +L
Sbjct: 61 FKKLAYL 67


>gi|213622839|ref|ZP_03375622.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 225

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 119/222 (53%)

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
           PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G       ++DT   TN
Sbjct: 1   PIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTN 60

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           +EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR +  +   S  G
Sbjct: 61  IEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLG 120

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           L+EM+R+R R SV       C  C G G +++  +V   I+R +      Y +   +V+ 
Sbjct: 121 LVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYA 180

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              V   L  ++   + E E   G  + V +      + F +
Sbjct: 181 SPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 222


>gi|322647281|gb|EFY43779.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
          Length = 395

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/322 (32%), Positives = 162/322 (50%), Gaps = 2/322 (0%)

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                    +K      I E+++  Q L+VQ+VK+  G KGA +TT ++L  RY V MP 
Sbjct: 76  HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            S      R  +     + LK++        G G I+RTA     + ++  D  YL R+W
Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             V E        + +Y E  L +R +RD     +  I V     Y    +F    +P  
Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G     
Sbjct: 254 TSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR 
Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373

Query: 453 RVQVGAISNFGLLEMSRQRIRS 474
           +  +   S  GL+EM+R+R R 
Sbjct: 374 KTSINGFSPLGLVEMTRKRTRE 395



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|254974694|ref|ZP_05271166.1| ribonuclease g [Clostridium difficile QCD-66c26]
 gi|255092083|ref|ZP_05321561.1| ribonuclease g [Clostridium difficile CIP 107932]
 gi|255313820|ref|ZP_05355403.1| ribonuclease g [Clostridium difficile QCD-76w55]
 gi|255516501|ref|ZP_05384177.1| ribonuclease g [Clostridium difficile QCD-97b34]
 gi|255649601|ref|ZP_05396503.1| ribonuclease g [Clostridium difficile QCD-37x79]
 gi|260682765|ref|YP_003214050.1| ribonuclease g [Clostridium difficile CD196]
 gi|260686363|ref|YP_003217496.1| ribonuclease g [Clostridium difficile R20291]
 gi|260208928|emb|CBA61933.1| ribonuclease g [Clostridium difficile CD196]
 gi|260212379|emb|CBE03209.1| ribonuclease g [Clostridium difficile R20291]
          Length = 473

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 198/387 (51%), Gaps = 3/387 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K+ Q +LVQI KEE G KGA + T +S++GRY V +P+  +    ++        +  K 
Sbjct: 76  KSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKK- 134

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                     +G+I+RT     T  EIK+D E L   ++N+ +     + P L+Y+  + 
Sbjct: 135 -ITKAVNKENLGLIIRTEAQGCTHDEIKKDIEELKLKYENILKEYKLGIGPKLLYKSLDF 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             + ++D    DI  II +    Y E K  ++ +  +Y   +   E+   +F    IE +
Sbjct: 194 ATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCL-EENRDVFDLYRIESK 252

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++ L   +V L S GY+II +TEAL  IDVN+G+      +++T  +TNLEAA+EI RQL
Sbjct: 253 IEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQL 312

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
            +RD+AG+I++DFIDM +KK+ + +   L+E   KD+ + +V  ++  GL+E++R+R + 
Sbjct: 313 IIRDIAGIIIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKE 372

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ +     C  C G   I+S   +  SI + +          NI+V  +  +   +   
Sbjct: 373 SIDKYYLMSCPCCDGEQTIKSVHYILDSIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEY 432

Query: 535 KRATIVEYEARFGVSINVVIGIELADK 561
               I +   ++ + I++     L   
Sbjct: 433 YMDIIDKIGEKYNIKISLNANSTLKHN 459



 Score = 70.8 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I++    + +  VL D R+ EL  E    K+   NIY   V +V P ++A FVD G
Sbjct: 2  KKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIG 60

Query: 63 GNRHGFL 69
            +  +L
Sbjct: 61 FKKLAYL 67


>gi|255655161|ref|ZP_05400570.1| ribonuclease g [Clostridium difficile QCD-23m63]
 gi|296451149|ref|ZP_06892890.1| ribonuclease G and E [Clostridium difficile NAP08]
 gi|296880499|ref|ZP_06904461.1| ribonuclease G and E [Clostridium difficile NAP07]
 gi|296259970|gb|EFH06824.1| ribonuclease G and E [Clostridium difficile NAP08]
 gi|296428453|gb|EFH14338.1| ribonuclease G and E [Clostridium difficile NAP07]
          Length = 473

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 197/387 (50%), Gaps = 3/387 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K+ Q +LVQI KEE G KGA + T +S++GRY V +P+  +    ++        +  K 
Sbjct: 76  KSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKK- 134

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                     +G+I+RT        EIK+D E L   ++N+ +     + P L+Y+  + 
Sbjct: 135 -ITKAVNKENLGLIIRTEAQGCNHDEIKKDIEELKLKYENILKEYKLGIGPKLLYKSLDF 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             + ++D    DI  II +    Y E K  ++ +  +Y   +   E+   +F    IE +
Sbjct: 194 ATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCL-EENRDVFDLYRIESK 252

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++ L   +V L S GY+II +TEAL  IDVN+G+      +++T  +TNLEAA+EI RQL
Sbjct: 253 IEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYRTNLEAAKEIVRQL 312

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           R+RD+AG+I++DFIDM +KK+   V   L+E   KD+ + +V  ++  GL+E++R+R + 
Sbjct: 313 RIRDIAGIIIIDFIDMHKKKHQNEVLNILEEEFNKDKRKAEVLGMTKLGLVEVARRREKE 372

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ +     C  C G   I+S   +  +I + +          NIIV  +  +   +   
Sbjct: 373 SIDKYYLMSCPCCDGEQTIKSVHYILDNIEKEIMRISEHTVYKNIIVEFNDFIFEQIKGY 432

Query: 535 KRATIVEYEARFGVSINVVIGIELADK 561
               I +   ++ + I++     L   
Sbjct: 433 YMDIIDKIGEKYNIKISLNANSTLKHN 459



 Score = 68.5 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I++    + +  VL D R+ EL  E    K+   N+Y   V +V P ++A FVD G
Sbjct: 2  KKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNVYRGIVKKVIPGIEACFVDIG 60

Query: 63 GNRHGFL 69
            +  +L
Sbjct: 61 FKKLAYL 67


>gi|228954729|ref|ZP_04116751.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229081711|ref|ZP_04214204.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock4-2]
 gi|228701556|gb|EEL54049.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock4-2]
 gi|228804927|gb|EEM51524.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 462

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|228960722|ref|ZP_04122361.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228798938|gb|EEM45913.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 462

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++        P L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNYFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQGDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+      +      I          + + I +    + +V    
Sbjct: 418 ELQKKFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|229152648|ref|ZP_04280836.1| Ribonuclease, Rne/Rng [Bacillus cereus m1550]
 gi|228630794|gb|EEK87435.1| Ribonuclease, Rne/Rng [Bacillus cereus m1550]
          Length = 462

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLEIEVEGTGGYIFRSASEKGGIEEIQAEMQGLQQLYEELKRKEDQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  ++K DR   ++   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMKDDRTYTRILGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLEECVSCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 462



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++ P Y
Sbjct: 61 LEKHAYLSYDDVPPSY 76


>gi|229192657|ref|ZP_04319616.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 10876]
 gi|228590747|gb|EEK48607.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 10876]
          Length = 462

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+ KE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVAKEAIDTKGPKLTANIEFTGKYVVYMPF-GEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQELQQLYEELKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKIGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V L +  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLSNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462



 Score = 83.1 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|229147016|ref|ZP_04275376.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST24]
 gi|228636404|gb|EEK92874.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST24]
          Length = 462

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++        P L++  
Sbjct: 132 -RKQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+      +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462



 Score = 84.3 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|206969681|ref|ZP_03230635.1| ribonuclease G [Bacillus cereus AH1134]
 gi|206735369|gb|EDZ52537.1| ribonuclease G [Bacillus cereus AH1134]
          Length = 462

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQELQQLYEALKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|37521075|ref|NP_924452.1| ribonuclease E [Gloeobacter violaceus PCC 7421]
 gi|35212071|dbj|BAC89447.1| ribonuclease E [Gloeobacter violaceus PCC 7421]
          Length = 662

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 124/409 (30%), Positives = 205/409 (50%), Gaps = 10/409 (2%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           +Q ++ E    +  +    D +    V   N    +    I      + + + ++  N  
Sbjct: 3   KQIIIAEQ--YRLAAVFAEDQIQELIVASGNHQVGDIYLGIVENVLPSIDAAFVNIGNPE 60

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
            +    V       + +       I E++  +Q +LVQ++KE  GNKG  +T  +SL GR
Sbjct: 61  RNGFIHVTDLGQIRLRRSSA---SISELVTPQQKVLVQVMKEPTGNKGPRLTGNVSLPGR 117

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           + VLMP   +G  +SR+I +  +R  L+     L  P GMG+++RT  A   +  +  D 
Sbjct: 118 FLVLMPF-GRGVNLSRRIRDDDERNRLRA-LAVLIKPPGMGLLVRTEAAGMDEQGVLEDL 175

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           E L++ W+ +++    + AP L+  + + I+R +RD Y   ++ I+V    G +  K  +
Sbjct: 176 ESLLKQWEKIQKQTAETRAPALLNRDEDFIQRILRDAYGAQVNRIVVDSHVGVKRVKQHL 235

Query: 326 KLLMPSYAR---IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
                        V  + +P  I     +   +    +  V LPS GY+II  TEAL  I
Sbjct: 236 LNWNGGRMPQGVYVEHHREPSSILDYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNSG  TR     +T L TN EAA EIARQLRLR++AG+I++DFIDM+ +++   V + 
Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGIIIIDFIDMDARRDQLQVLEH 355

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
             ++LK D++R Q+  ++  GL+E++R+R   S+ E   K C  C G G
Sbjct: 356 FSKALKADKSRPQIAQLTELGLVEITRKRQGQSIYEIFGKPCPTCDGLG 404



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 1  MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M  +++I     E+ R   V  +++++EL   S +     G+IYL  V  V PS+ AAFV
Sbjct: 1  MPKQIII----AEQYRLAAVFAEDQIQELIVASGNH--QVGDIYLGIVENVLPSIDAAFV 54

Query: 60 DYGG-NRHGFLPFLEIH 75
          + G   R+GF+   ++ 
Sbjct: 55 NIGNPERNGFIHVTDLG 71


>gi|228941613|ref|ZP_04104160.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974542|ref|ZP_04135108.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981137|ref|ZP_04141437.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis Bt407]
 gi|228778337|gb|EEM26604.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis Bt407]
 gi|228784945|gb|EEM32958.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817825|gb|EEM63903.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942225|gb|AEA18121.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 462

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/408 (27%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQAEMQGLQQLYEELKRKEDQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  ++K DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMKDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLEECVSCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDD---IIEKYTIIRFGSKKEIVERKK 462



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++ P Y
Sbjct: 61 LEKHAYLSYDDVPPSY 76


>gi|296504937|ref|YP_003666637.1| Rne/Rng family ribonuclease [Bacillus thuringiensis BMB171]
 gi|296325989|gb|ADH08917.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis BMB171]
          Length = 462

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++        P L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNYFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQGDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+      +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462



 Score = 84.6 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|30022520|ref|NP_834151.1| ribonuclease, Rne/Rng family [Bacillus cereus ATCC 14579]
 gi|229048158|ref|ZP_04193727.1| Ribonuclease, Rne/Rng [Bacillus cereus AH676]
 gi|229129724|ref|ZP_04258692.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-Cer4]
 gi|29898078|gb|AAP11352.1| Ribonuclease G [Bacillus cereus ATCC 14579]
 gi|228653841|gb|EEL09711.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-Cer4]
 gi|228723145|gb|EEL74521.1| Ribonuclease, Rne/Rng [Bacillus cereus AH676]
          Length = 462

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++        P L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+      +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462



 Score = 84.3 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|218232321|ref|YP_002369253.1| ribonuclease G [Bacillus cereus B4264]
 gi|218160278|gb|ACK60270.1| ribonuclease G [Bacillus cereus B4264]
          Length = 462

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 193/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+      +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462



 Score = 84.3 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|229111917|ref|ZP_04241461.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-15]
 gi|228671481|gb|EEL26781.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-15]
          Length = 462

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++        P L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNYFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+      +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462



 Score = 84.3 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|150021634|ref|YP_001306988.1| ribonuclease [Thermosipho melanesiensis BI429]
 gi|149794155|gb|ABR31603.1| ribonuclease, Rne/Rng family [Thermosipho melanesiensis BI429]
          Length = 465

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 192/370 (51%), Gaps = 10/370 (2%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +N   +LVQ+ K+  G+KG  +T+ +S+AGRY VL P  S+   +S+KI +  +RK L +
Sbjct: 85  ENGGKILVQVKKDPVGDKGPQLTSNISVAGRYVVLFPF-SEVVGVSKKIEDEDERKRLYD 143

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +A        +GVI+RTA     ++ I  + + L +  + + E         ++Y+E NL
Sbjct: 144 LAGRFSEKYNLGVIMRTASEGLDEVHIMSEIDILSKKINKIIESFKRKRKAQVLYKEENL 203

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           +   +R+   KD+  II +  K     + ++K+      +  +        F    I   
Sbjct: 204 LDYILREKLTKDVKLIITNNFKHVELIRKYLKIFS----KRPKIEIIDGDSFDYMDIYKY 259

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
              L + +V LPS G +II++ EAL  IDVNS    +    ++TA QTN EA  EI RQL
Sbjct: 260 FRELLKRKVLLPSGGEIIIDKAEALTVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQL 319

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR++ G+I++DFIDM+  +  + + K++ E +KKD++++++   +  GLLEMSR+R   
Sbjct: 320 RLRNIGGIILIDFIDMDSDEKKKLILKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVR 379

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN- 533
           S  E+   +C  C G G+I S       + + +EE      A  +I+  H      L   
Sbjct: 380 SFFENYITICPICNGTGFIVSPKMTLKKLYQKIEEAP--EDAKEVIIKLHPYFKDKLEKS 437

Query: 534 --QKRATIVE 541
             +KR  IV 
Sbjct: 438 ELKKRKDIVY 447



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   +L+  S        ++ +NR+ EL   S+ ++++ GNIYL ++ RV  +L A FV+
Sbjct: 1  MEK-ILVLNSLDNGLHYAIIENNRLVEL--ASDEEEKLTGNIYLGRIERVVNALDALFVN 57

Query: 61 YGGNRHGFLPFLEIHPDYY 79
           G  ++GFL F ++   Y+
Sbjct: 58 IGTKKNGFLRFKDVPEKYF 76


>gi|75763217|ref|ZP_00742978.1| Ribonuclease G [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228902975|ref|ZP_04067115.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 4222]
 gi|74489291|gb|EAO52746.1| Ribonuclease G [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856651|gb|EEN01171.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 4222]
          Length = 463

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 105/410 (25%), Positives = 189/410 (46%), Gaps = 21/410 (5%)

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              I   Q +LVQ+VKE    KG  +T  +   G+Y V MP         +   N     
Sbjct: 75  CYRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPFDEMRAVSRKIKNNK---- 130

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
             ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++ 
Sbjct: 131 -KRQQLLQIEVEGTGGYIFRSASEKGAIEEIQAEMQMLQQLYEELKRKEGQGKAPLLLHR 189

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
               + R  ++   + I +++V      +E ++ +     S+      Y +   +F   G
Sbjct: 190 PATFLDRVFQENPIETIEKVVVDTRSIVKELEENIGKEKVSF------YNEKSSMFNHFG 243

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           IE +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEI
Sbjct: 244 IEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEI 303

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+
Sbjct: 304 ARQLRLRDIGGMILIDFINMKRREDKEMVRECLMAAMQNDRTYTRVLGFTELGILEMTRK 363

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    D+   
Sbjct: 364 RKKHSLRDVLLEECVPCKATGYMMSYETIAYELERELITYGNIED-EAVLIAAPKDLQKQ 422

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
            L        E +      I          + + I +      +V   + 
Sbjct: 423 FLQ------KELQKNIPFEIYFKDD---MIEKYAIVRFGSKTEIVERKNS 463



 Score = 81.6 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY  ++ R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSCY 76


>gi|228923199|ref|ZP_04086489.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228836405|gb|EEM81756.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 462

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       +I+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGEIEKIQAEMQRLQQLYEELKRKESQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|229071955|ref|ZP_04205165.1| Ribonuclease, Rne/Rng [Bacillus cereus F65185]
 gi|228711114|gb|EEL63079.1| Ribonuclease, Rne/Rng [Bacillus cereus F65185]
          Length = 462

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 195/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++  +V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKENVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGSIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|311114204|ref|YP_003985425.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019]
 gi|310945698|gb|ADP38402.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019]
          Length = 1176

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 216/426 (50%), Gaps = 11/426 (2%)

Query: 85   DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
            DR  +++E +     S    + +    V+   + +      +               +  
Sbjct: 584  DRLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 643

Query: 145  VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
               N     G    D  +   +   ++   K    +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 644  QARNGVLYAGEVNWDTTRLEGQPRRMELAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAG 703

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            R+ VL+P+ +    +SRK+++    +           P  MG+I+RTA    ++  I++D
Sbjct: 704  RFLVLVPSGAMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGIIIRTAADGASEDAIEKD 760

Query: 265  FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
             E L++ W+ +        +   P L+  E ++  R +RD++  D  ++IV G+  Y   
Sbjct: 761  LESLVKQWERIEAKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRI 820

Query: 322  KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
             ++++++ P     +  ++         F +  I+ QL    + +V LP+ G ++I++TE
Sbjct: 821  CEYLEMMAPDLRSKIEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 880

Query: 378  ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
            A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 881  AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 940

Query: 437  RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
              V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  CKG G+I   
Sbjct: 941  DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 1000

Query: 497  SSVALS 502
                 S
Sbjct: 1001 EPTVSS 1006



 Score = 86.2 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 596 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 655

Query: 75  HPD 77
           + D
Sbjct: 656 NWD 658


>gi|154248834|ref|YP_001409659.1| ribonuclease [Fervidobacterium nodosum Rt17-B1]
 gi|154152770|gb|ABS60002.1| ribonuclease, Rne/Rng family [Fervidobacterium nodosum Rt17-B1]
          Length = 463

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 220/473 (46%), Gaps = 18/473 (3%)

Query: 94  NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153
                + +A A  + +G +        +E +   N      E+ I +     V   +D  
Sbjct: 6   KKDGENEKAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKLPDDEN 65

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
                   K     +     ++  Q +LVQI KE    KG  VTT + + GRY V MP  
Sbjct: 66  AFLRIKDIKNEYLNFFGISKLQECQKILVQIKKEGGNTKGPQVTTNIGIPGRYIVYMPF- 124

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           SK   ISRKITN  DRK+L+E+   L+     G ILRT+     +  I+++ E L + W+
Sbjct: 125 SKSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEYIEKEAEELHKKWE 184

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +      S    L+++E +  +  +R+   K++ ++I + +K        +K++   + 
Sbjct: 185 EIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNSQK--------LKVISKDFK 236

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             +         F    +  Q+ +  +    LPS G ++I++TEAL  IDVNSG  T   
Sbjct: 237 PNIPVKLIESDPFEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEALTIIDVNSGHYTSSE 296

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
             E+ + + N+EAA+EI R +RLR++ G+I++DFIDM+ ++N   +   +K    KD+ +
Sbjct: 297 SHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEILNAIKSETLKDKNK 356

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
           ++V   +  GLLEM+R+R   S+ E  T +C  C G G++ S   V   +L+ V+     
Sbjct: 357 IEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHVMSPKFVIERLLKEVKNKP-- 414

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
             A  +I+  H  +  ++              F V I++     L  + + I 
Sbjct: 415 KNAKEVIIKFHPSLKEFINKDL------LRKTFKVPIHIHF-THLDPESYEIT 460



 Score = 65.4 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
           ++ +  + E+    + ++ I GNIY+ K+ +  P+L+AAFV    + + FL   +I  +
Sbjct: 17 ALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKLPDDENAFLRIKDIKNE 76

Query: 78 Y 78
          Y
Sbjct: 77 Y 77


>gi|229087009|ref|ZP_04219163.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-44]
 gi|228696272|gb|EEL49103.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-44]
          Length = 463

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 200/409 (48%), Gaps = 21/409 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             +   Q LLVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRVHEGQALLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNYK---- 130

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    ++V    G I R+A    +  E++ + +YL  L++ ++       AP L++  
Sbjct: 131 KRQELMDIQVEGTGGFIFRSACEKGSVSEVQSEMKYLQELFEKLKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + IS++++      +E +D +       +  V  + +   +F   G+
Sbjct: 191 ETFLDRVFQENPVESISKVVIDSHTILKEVEDKVG------SDKVMLHNEKTSMFDHYGV 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+II Q E +  IDVN+G+ T +  ++DT LQTN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGSYLIIEQMETMTVIDVNTGKFTGKQNLQDTVLQTNEIAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M++++N   V +KL  SL+ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKRENKEKVREKLIFSLQGDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C +CK  GY+ S  ++A  + R +  Y        +++    +V    
Sbjct: 365 KKHSLRDVLLEDCLHCKTTGYVLSNETIAYELERELITY-KHVEDEAVLIAAPKEVQKIF 423

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
           L        E        I          + + I +    + ++N  + 
Sbjct: 424 LQ------KELPKNIPFQIYFTDEK---AEKYAIIRFGTKKEMLNRKNS 463



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV V  D  + EL ++    ++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYINYT-GSEKRVAVEEDQEIVELLWKRNEAQEIVGHIYVGRVVRTLAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEI 74
            +H +L + ++
Sbjct: 61 LEKHAYLSYDDV 72


>gi|228993185|ref|ZP_04153106.1| Ribonuclease, Rne/Rng [Bacillus pseudomycoides DSM 12442]
 gi|228999235|ref|ZP_04158815.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock3-17]
 gi|228760432|gb|EEM09398.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock3-17]
 gi|228766511|gb|EEM15153.1| Ribonuclease, Rne/Rng [Bacillus pseudomycoides DSM 12442]
          Length = 463

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 105/404 (25%), Positives = 189/404 (46%), Gaps = 21/404 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             +   Q LLVQ+VKE    KG  +T  +   G+Y V MP         +   N      
Sbjct: 76  YRVHEGQALLVQVVKEAIDTKGPKLTANVEFTGKYVVYMPYDEMRAVSRKIKNNK----- 130

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    ++V    G I R+A       E++ + ++   L+  ++    +  AP L++  
Sbjct: 131 KRQQLLEIQVEGTGGYIFRSACDKGAIDEVQIEMQHFQDLYKELKRKEEHGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I ++IV       E +D +     S+      Y +   +F   G+
Sbjct: 191 ATFLDRVFKENPIETIEKVIVDTRSIVPELQDKVGKEKVSF------YNETTSMFIHYGV 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V L +  Y+II Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLSNGSYLIIEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEIAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M++++N   V ++L  SL++DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKEENKEKVRERLISSLQRDRTYTRVLRFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +     C+ C+  GY+ S  S+A  + R +  Y        +I  +     ++L
Sbjct: 365 KKHSLRDVLLDDCSACQATGYVMSHESIAYELERELVTYSSSEDEAVLIAASKEVQKIFL 424

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
                    E +      +          + + I +    Q ++
Sbjct: 425 Q-------KELQKNIPFQVYFTDEE---AEKYAIIRFGTRQEMM 458



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV V    ++ EL ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYINYT-GSEKRVAVEEKQKIVELLWQRNQEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|283783663|ref|YP_003374417.1| S1 RNA binding domain protein [Gardnerella vaginalis 409-05]
 gi|283441778|gb|ADB14244.1| S1 RNA binding domain protein [Gardnerella vaginalis 409-05]
          Length = 1093

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 119/426 (27%), Positives = 222/426 (52%), Gaps = 13/426 (3%)

Query: 87  QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
           + L+      +    +V +D    +  + +   +  V  I     +    S+ +A  D+ 
Sbjct: 519 ERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIG 578

Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
                V   G    D+ +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 579 QARNGVLYAGEVNWDMARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 638

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+      +SRK+++    +           P  MGVI+RTA    ++  I++D
Sbjct: 639 RFLVLVPSGGMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGVIIRTAADGASEESIEKD 695

Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            + L++ W+ +        +   P L+  E ++  R +RD++  D  ++IV GE   +  
Sbjct: 696 LDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRI 755

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
            ++++++ P     V  ++         F +  I+ QL    + +V LP+ G ++I++TE
Sbjct: 756 DEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 815

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 816 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 875

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  CKG G+I   
Sbjct: 876 DLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 935

Query: 497 SSVALS 502
                S
Sbjct: 936 EPTVSS 941



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL ++  V PS++AAFVD G  R+G L   E+
Sbjct: 531 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV 590

Query: 75  HPD 77
           + D
Sbjct: 591 NWD 593


>gi|218899614|ref|YP_002448025.1| ribonuclease, Rne/Rng family [Bacillus cereus G9842]
 gi|218545527|gb|ACK97921.1| ribonuclease, Rne/Rng family [Bacillus cereus G9842]
          Length = 462

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 105/409 (25%), Positives = 187/409 (45%), Gaps = 21/409 (5%)

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              I   Q +LVQ+VKE    KG  +T  +   G+Y V MP         +   N     
Sbjct: 75  CYRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPFDEMRAVSRKIKNNK---- 130

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
             ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++ 
Sbjct: 131 -KRQQLLQIEVEGTGGYIFRSASEKGAIEEIQAEMQMLQQLYEELKRKEGQGKAPLLLHR 189

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
               + R  ++   + I +++V      +E +  +     S+      Y +   +F   G
Sbjct: 190 PATFLDRVFQENPIETIEKVVVDTRSIVKELEGKIGKEKVSF------YNEKSSMFNHFG 243

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           IE +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEI
Sbjct: 244 IEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEI 303

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+
Sbjct: 304 ARQLRLRDIGGMILIDFINMKRREDKEMVRECLMAAMQNDRTYTRVLGFTELGILEMTRK 363

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    D+   
Sbjct: 364 RKKHSLRDVLLEECVPCKATGYMMSYETIAYELERELITYGNIED-EAVLIAAPKDLQKQ 422

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
            L        E +      I          + + I +      +V    
Sbjct: 423 FLQ------KELQKNIPFEIYFKDD---MIEKYAIVRFGSKTEIVERKK 462



 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY  ++ R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSCY 76


>gi|237737607|ref|ZP_04568088.1| ribonuclease G and E [Fusobacterium mortiferum ATCC 9817]
 gi|229419487|gb|EEO34534.1| ribonuclease G and E [Fusobacterium mortiferum ATCC 9817]
          Length = 488

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 138/482 (28%), Positives = 255/482 (52%), Gaps = 28/482 (5%)

Query: 74  IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133
           I+ D +Q     R A++++  + +   E   +   + ++      ++      A  +   
Sbjct: 6   INIDEFQ----SRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNIGL 61

Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193
           E+ + +         V D++    + +      +  I++++     ++VQ++ E RG KG
Sbjct: 62  EKNAFL--------YVNDLREFEEKYLDGICNSERPIEDILTVGDEVVVQVLSEPRGTKG 113

Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253
           A VTT+ ++ G+Y VLMPN +    IS+KI    +R  L+EI R L+    MGVI+RTA 
Sbjct: 114 ARVTTHYTIPGKYLVLMPNNNH-IAISKKIKEEEERNRLEEIVRDLKPE-NMGVIIRTAA 171

Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313
             ++    +R+ EYL++ W+++ +    +    ++Y++  ++   +RD++  +I E+++ 
Sbjct: 172 QGKSIFHFEREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVID 231

Query: 314 GEKGYREAKDFMKLLMPS--YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371
            E+ Y E  D++          +I    +D   IF R GIE ++++  + EV L   GY+
Sbjct: 232 NEEVYWEVIDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYL 291

Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431
           +I +TEAL+SIDVN+G++T  + +E T L TNLEAA EI RQLRLR+L G+I++DFIDM 
Sbjct: 292 VIQKTEALISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMR 351

Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
            +++   V + L+++L KDR +  +   ++ GL+EM+R+R    +     + C  C+G G
Sbjct: 352 LEEDKLKVLEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTG 411

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD------------VVLYLLNQKRATI 539
            I+S+ SV   ++  ++E       + I V                 V  ++ N+K+  I
Sbjct: 412 KIKSKDSVIHEMMTEIKECAKDEDINIIKVILSKKLKIAFKELYFDFVEDFVKNRKKKII 471

Query: 540 VE 541
           +E
Sbjct: 472 LE 473



 Score = 92.0 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          N+++I+     ++R  ++ D +V E+  E E +++I  NIY  KV  V P +++AFV+ G
Sbjct: 2  NQIVINIDE-FQSRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNIG 60

Query: 63 GNRHGFLPFLEI 74
            ++ FL   ++
Sbjct: 61 LEKNAFLYVNDL 72


>gi|327398514|ref|YP_004339383.1| ribonuclease, Rne/Rng family [Hippea maritima DSM 10411]
 gi|327181143|gb|AEA33324.1| ribonuclease, Rne/Rng family [Hippea maritima DSM 10411]
          Length = 468

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 189/393 (48%), Gaps = 15/393 (3%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +  Q ++VQ++K     KG  V+  +++ G Y VL+        +S+ I++    K L++
Sbjct: 87  RENQEVMVQVLKPTVSAKGPKVSLNITIPGNYLVLLKGVD-FVGVSKHISDKQKNKELRD 145

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +   L+    +G I RTA    +  E++ +  +L ++   + +    + AP L+YEE  L
Sbjct: 146 MLSSLKED-DIGFIARTASRFASLEELEFEAHHLKKIARQIDKRYETAKAPSLIYEEPQL 204

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             + IR+    +  EII    + +++   +++ +  +    V+ Y    PIF   GIE +
Sbjct: 205 PLKVIREYCDDNTDEIIFDDIETFKKTTSYLQEMYNACKNKVKFYNGDKPIFEFFGIEDE 264

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQ 413
           +  L    V L S GY+II +TEA  +IDVN+G         ED   + NLEAA E+  Q
Sbjct: 265 IRQLQNNVVHLKSGGYLIIEKTEAFFAIDVNAGSYHYRDYNAEDAIFKVNLEAAYEVFNQ 324

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           + LRDL GLI+VDFIDM  +++ + +E  L +  K D+ +  V  +S  G++E+SR++  
Sbjct: 325 INLRDLGGLIIVDFIDMNSQEHKKKIEDVLYKLAKDDKRKTYVSKMSELGVVEISRRKNN 384

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
           + + +   + C  C   G ++S S +   I     + +         +     V+  L  
Sbjct: 385 TDIFDEMFEKCPDCYNGGLVKSTSFICSEI----YQKIKYSKKKKFRLKATPGVIEQLRK 440

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
                 V++E +    I+  I      + + +E
Sbjct: 441 Y-----VQFEDK---KIDYKISGSCNAEEYVLE 465



 Score = 57.3 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK--QIKGNIYLAKVTRVEPSLQAAF 58
          M  ++LI +S     +   +  + +     + + K    I GN+Y   +  V   L AAF
Sbjct: 1  MT-RLLI-SSDPFILKAAKIEQDNLTVFVMKRKDKSASSIVGNVYKGIIENVAIQLGAAF 58

Query: 59 VDYGGNRHGFL 69
          V+ G +++ FL
Sbjct: 59 VNIGLDKNAFL 69


>gi|218508583|ref|ZP_03506461.1| ribonuclease, Rne/Rng family protein [Rhizobium etli Brasil 5]
          Length = 257

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 85/166 (51%), Positives = 103/166 (62%), Gaps = 4/166 (2%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
           YGGNRHGFL F EIHPDYYQIP +DRQALL+       +     +DV H +     D S 
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLST 116

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166
           ++   +     E      ++      +               + +R
Sbjct: 117 QDQPDVGIVPAEVPAPVAVADEPAPAAEAAPATAEEAPAKKARPRR 162


>gi|229006781|ref|ZP_04164414.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock1-4]
 gi|228754403|gb|EEM03815.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock1-4]
          Length = 463

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 105/404 (25%), Positives = 189/404 (46%), Gaps = 21/404 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             +   Q LLVQ+VKE    KG  +T  +   G+Y V MP         +   N      
Sbjct: 76  YRVHEGQALLVQVVKEAIDTKGPKLTANVEFTGKYVVYMPYDEMRAVSRKIKNNK----- 130

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    ++V    G I R+A       E++ + ++   L+  ++    +  AP L++  
Sbjct: 131 KRQQLLEIQVEGTGGYIFRSACDKGAIDEVQIEMQHFQDLYKELKRKEEHGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I ++IV       E +D +     S+      Y +   +F   G+
Sbjct: 191 ATFLDRVFKENPIETIEKVIVDTRSIVPELQDKVGKEKVSF------YNETTSMFIHYGV 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V L +  Y+II Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLSNGSYLIIEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEIAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M++++N   V ++L  SL++DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKEENKEKVRERLISSLQRDRTYTRVLRFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +     C+ C+  GY+ S  S+A  + R +  Y        +I  +     ++L
Sbjct: 365 KKHSLRDVLLDGCSACQATGYVMSHESIAYELERELVTYSSSEDEAVLIAASKEVQKIFL 424

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
                    E +      +          + + I +    Q ++
Sbjct: 425 Q-------KELQKNIPFQVYFTDEE---AEKYAIIRFGTRQEMM 458



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV V    ++ EL ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYINYT-GSEKRVAVEEKQKIVELLWQRNQEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|229180722|ref|ZP_04308060.1| Ribonuclease, Rne/Rng [Bacillus cereus 172560W]
 gi|228602700|gb|EEK60183.1| Ribonuclease, Rne/Rng [Bacillus cereus 172560W]
          Length = 462

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 193/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +   +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAILVQVVKEAIDTKGPKLKANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +E+    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQELQQLYEELKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E +D +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTIIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   K C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|229019670|ref|ZP_04176478.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1273]
 gi|229025907|ref|ZP_04182302.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1272]
 gi|228735410|gb|EEL86010.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1272]
 gi|228741633|gb|EEL91825.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1273]
          Length = 469

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/408 (27%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 83  YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 138

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A    T  EI+ + + L +L++ ++       AP L++  
Sbjct: 139 -RQQLLEIEVKGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEEQGKAPLLLHRP 197

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 198 ATFLDRVFQENPIETIEKVVVDTRSVVKELEEKVGEERVSF------YNEKSSMFNHFGI 251

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 252 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEAAAEEIA 311

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +L+ DR   +V   +  G+LEM+R+R
Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRESLMLALQDDRTYTRVLGFTELGILEMTRKR 371

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 372 KKHSLRDVVLEECVPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 424

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           + QK     E +      I          + + I +    + +V    
Sbjct: 425 ILQKHFLQKELQKNLPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469



 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV +    ++ EL ++   +++I G+IY+ ++ R    + AAFV+ G
Sbjct: 9  KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 68 LEKHAYLSYDDVPSSY 83


>gi|229117947|ref|ZP_04247308.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-3]
 gi|228665518|gb|EEL20999.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-3]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQTEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E +D +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSVVKELEDKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V L +  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AA+EIA
Sbjct: 240 EREIEKALQKIVWLQNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAADEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKKREDKEKVREGLIAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    D+    
Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPQDLQKQF 418

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + +V    
Sbjct: 419 LQ------KELQKNIPFEIYFKDD---TIEKYAIIRFGSKKEIVERKK 457



 Score = 80.8 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +   N++ E  ++   +++I G IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKNKIVEFLWKRNEEQEIVGYIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|49480672|ref|YP_038496.1| ribonuclease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49332228|gb|AAT62874.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 462

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 196/408 (48%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I ++IV      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +      +V    
Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKTEIVERKK 462



 Score = 83.9 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSSY 76


>gi|229163402|ref|ZP_04291353.1| Ribonuclease, Rne/Rng [Bacillus cereus R309803]
 gi|228619971|gb|EEK76846.1| Ribonuclease, Rne/Rng [Bacillus cereus R309803]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A    T  EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQELLQIEVEGTGGYIFRSASEKGTIEEIQAEMQRLQQLYEELKRKESQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEIAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ K++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRKEDKEKVRECLIAAMQGDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 412

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + ++    
Sbjct: 413 NLQKKFLQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 457



 Score = 82.7 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWQRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          + P Y
Sbjct: 67 VPPSY 71


>gi|50725997|dbj|BAD33523.1| putative endoribonuclease E [Oryza sativa Japonica Group]
          Length = 898

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 99/471 (21%), Positives = 185/471 (39%), Gaps = 63/471 (13%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           ++I++S     R+ VL D ++ EL  E         +IYL  VT++ P +  AFVD G +
Sbjct: 415 IVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTKLVPHMGGAFVDIGLS 474

Query: 65  RHGFLPFLEIHPD---YYQIPF-------------SDRQALLKESNIAQTDSEAVADDVT 108
           R   +   + + D   Y QI                D     ++ +   TD E   ++  
Sbjct: 475 RPSLMSIKQ-NRDPFVYPQIVKNAKRDSANFSDYNDDSLPTYEDEDDDMTDGELADEEND 533

Query: 109 HGDVTIPNDHSLEEVA-------------------------------PIANFSQETEEES 137
                 P +   E                                     +   E  E+ 
Sbjct: 534 DESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEEKDDEIDDHMEDEYNEDL 593

Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197
           +    ++V ++++ +                     ++    ++VQ+VKE  G+KG  ++
Sbjct: 594 LPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQVVKEGLGSKGPTLS 653

Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257
            +  L  R+ +L+ +      +S+KIT     +   +    L  P G  +  RT  A  +
Sbjct: 654 PFPCLRSRFWILV-SRGNKVGVSKKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHS 710

Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDI 307
             E+++D + L+  W  + E A ++              +++         ++D + + +
Sbjct: 711 WEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKV 770

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
             ++V   + Y E  ++++ + P     V  YE   PIF    IE ++D++    V L +
Sbjct: 771 KRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHN 830

Query: 368 RGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRL 416
            G ++I QTEALVSIDVN G S   +    E   L+ NLEAA+++      
Sbjct: 831 GGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQVCPMFCF 881


>gi|229032097|ref|ZP_04188078.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1271]
 gi|228729237|gb|EEL80233.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1271]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +          V  Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGK------EKVAFYNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEAAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  ++K DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLLAAMKNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGDIEDEAVL-------IAAPK 412

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +    + +V    
Sbjct: 413 ELQKQFLQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +   N++ E  ++   +++I G+IY+ +V R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKNKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|52141060|ref|YP_085769.1| ribonuclease [Bacillus cereus E33L]
 gi|51974529|gb|AAU16079.1| ribonuclease, Rne/Rng family [Bacillus cereus E33L]
          Length = 463

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/409 (26%), Positives = 194/409 (47%), Gaps = 21/409 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEDQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSLFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQIDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
             QK+    E +      I          + + I +    + +V   + 
Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKNS 463



 Score = 83.9 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSSY 76


>gi|229175119|ref|ZP_04302635.1| Ribonuclease, Rne/Rng [Bacillus cereus MM3]
 gi|228608255|gb|EEK65561.1| Ribonuclease, Rne/Rng [Bacillus cereus MM3]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 191/408 (46%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   +  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALRKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+  ++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRSEDKEKVRECLMAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 360 KKHSLRDVLLEECVSCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 412

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+    E +      I          + + I +      +V    
Sbjct: 413 ELQKQFLQKELQKNIPFEICFKDD---MIEKYAIVRFGSKTEIVERKK 457



 Score = 80.8 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|229098919|ref|ZP_04229854.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-29]
 gi|228684417|gb|EEL38360.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-29]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 195/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQTEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E +D +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSVVKELEDKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V L +  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AA+EIA
Sbjct: 240 EREIEKALQKIVWLQNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAADEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V ++L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKKREDKEKVRERLIAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    D+    
Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPQDLQKQF 418

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + +V    
Sbjct: 419 LQ------KELQKNIPFEIYFKDD---TIEKYAIIRFGSKKEIVERKK 457



 Score = 80.8 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +   N++ E  ++   +++I G IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKNKIVEFLWKRNEEQEIVGYIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|308234919|ref|ZP_07665656.1| ribonuclease G [Gardnerella vaginalis ATCC 14018]
          Length = 1137

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 216/426 (50%), Gaps = 11/426 (2%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E +     S    + +    V+   + +      +               +  
Sbjct: 555 DRLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 614

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   ++   K    +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 615 QARNGVLYAGEVNWDTTRLEGQPRRMELAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAG 674

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+ +    +SRK+++    +           P  MG+I+RTA    ++  I++D
Sbjct: 675 RFLVLVPSGAMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGIIIRTAADGASEDAIEKD 731

Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L++ W+ +        +   P L+  E ++  R +RD++  D  ++IV G+  Y   
Sbjct: 732 LESLVKQWERIEAKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRI 791

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
            ++++++ P     +  ++         F +  I+ QL    + +V LP+ G ++I++TE
Sbjct: 792 CEYLEMMAPDLRSKIEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 851

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           A+ +IDVN+GR   R   +E+T  + NLEA+EEIARQLRLRD+ G++++D++DM    N 
Sbjct: 852 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 911

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
             V ++L E L +DR + QV  +++ GL++M+R+R+   ++E+ ++ C  CKG G+I   
Sbjct: 912 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 971

Query: 497 SSVALS 502
                S
Sbjct: 972 EPTVSS 977



 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       +    GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 567 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 626

Query: 75  HPD 77
           + D
Sbjct: 627 NWD 629


>gi|229105083|ref|ZP_04235734.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-28]
 gi|228678264|gb|EEL32490.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-28]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 195/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQTEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E +D +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSVVKELEDKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V L +  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AA+EIA
Sbjct: 240 EREIEKALQKIVWLQNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAADEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+++++   V ++L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKKREDKEKVRERLIAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    D+    
Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPQDLQKQF 418

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + +V    
Sbjct: 419 LQ------KELQKNIPFEIYFKDD---TIEKYTIIRFGSKKEIVERKK 457



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +   N++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKNKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|237785940|ref|YP_002906645.1| ribonuclease E [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758852|gb|ACR18102.1| ribonuclease E [Corynebacterium kroppenstedtii DSM 44385]
          Length = 1258

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 144/608 (23%), Positives = 254/608 (41%), Gaps = 45/608 (7%)

Query: 154  GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
            G       +   RQ  I++ +K    +LVQ+ K+  G+KG  +T+++SLAGRY V +P  
Sbjct: 490  GDIDWRHTRHTGRQRKIEKALKPGDPILVQVTKDSVGHKGPRLTSHISLAGRYLVYVP-E 548

Query: 214  SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
             +   +SRK+  P  ++  K  A    +P   G I+RTA       +I RD      +WD
Sbjct: 549  GRAHGVSRKLPEPERKRLKK--AVSGILPDEGGAIIRTAAEGVDTEDIARDVRRQQNVWD 606

Query: 274  NVREL------------------------------ALNSVAPHLVYEEGNLIKRAIRDLY 303
             + E                                 +   P  ++EE NL+ + +RDL+
Sbjct: 607  TILEKADELRTLPGSQASSGKGSGKKNSKGGKKGSKPHFDGPQTLHEEPNLLVKVVRDLF 666

Query: 304  CKDISEIIVSGEKGYREAKDFMKLLMPSYA----RIVRQYEDPHPIFFRSGIEVQLDSLH 359
             +D  E+IV G + +     ++  + P       +  RQ  D    F   GI+ QL    
Sbjct: 667  NEDFDELIVDGGRSWSMVSSYIHRIAPDLEEKLSKYERQDHDGQDAFGHWGIDKQLKQAL 726

Query: 360  QTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRD 418
               V LPS G ++I +TEA+  IDVN+GR T     +E+T  + NLEAA+EI RQ+RLRD
Sbjct: 727  DRVVFLPSGGTLVIEKTEAMTVIDVNTGRFTGSSGSLEETVTRNNLEAADEIVRQMRLRD 786

Query: 419  LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
            + G+IVVDFIDM  ++N   V ++L E+L KDR R Q+G +++ GL++++R+R+   ++E
Sbjct: 787  IGGMIVVDFIDMVLEENQELVLRRLSEALAKDRTRHQLGEVTSLGLVQITRKRLGKGLVE 846

Query: 479  STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538
            + +  C+ C G G+I     +   +L S ++      +  +  +  +D+  Y  +     
Sbjct: 847  TFSTPCSECHGRGFIVHDDPI---LLSSTDDDESDDDSAALQDNVDNDLPEYSFDDDTDD 903

Query: 539  IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
              +  +    S +         +               +G +  S+ Q  S +       
Sbjct: 904  HADDTSSDSTSGDSKNDRSKGGRSGGGRSKKDHAGKGGSGKQGHSEKQGDSEEATTRRRS 963

Query: 599  QDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
             +E           ED  +   ++        +          A D+  +G        +
Sbjct: 964  IEEIAAAAVILADDEDPDEPSGADYLPAAQDSRSGGDDADNASAGDNGSSGDKDGRPRRR 1023

Query: 658  NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVK 714
                 +     +  +    +  E+         + +     T   P+ ++   S D   +
Sbjct: 1024 RRRKTTRSSRSQHEEQVKADHTESDGAKTNPPENATKRDEETAHHPDADADKGSGDKTTR 1083

Query: 715  KTRWWKRR 722
              +   RR
Sbjct: 1084 GKKQRGRR 1091



 Score = 82.7 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T+V ++ D+++ E    SE  + + GNIYL +V  V  S++AAFVD G +R+G +   +I
Sbjct: 433 TQVAIMEDDQLVEHFVTSERTRTLVGNIYLGRVQNVLASMEAAFVDIGTDRNGVIYSGDI 492


>gi|49187338|ref|YP_030590.1| ribonuclease [Bacillus anthracis str. Sterne]
 gi|165871964|ref|ZP_02216605.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0488]
 gi|167636211|ref|ZP_02394515.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0442]
 gi|167640697|ref|ZP_02398957.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0193]
 gi|170688683|ref|ZP_02879888.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0465]
 gi|177654002|ref|ZP_02936043.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0174]
 gi|190566872|ref|ZP_03019788.1| ribonuclease, Rne/Rng family [Bacillus anthracis Tsiankovskii-I]
 gi|227817226|ref|YP_002817235.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. CDC 684]
 gi|229601191|ref|YP_002868730.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0248]
 gi|254687064|ref|ZP_05150922.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736550|ref|ZP_05194256.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741588|ref|ZP_05199275.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754814|ref|ZP_05206849.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str.
           Vollum]
 gi|254757646|ref|ZP_05209673.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str.
           Australia 94]
 gi|270000531|ref|NP_846891.2| ribonuclease [Bacillus anthracis str. Ames]
 gi|49181265|gb|AAT56641.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. Sterne]
 gi|164712254|gb|EDR17790.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0488]
 gi|167511269|gb|EDR86655.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0193]
 gi|167528432|gb|EDR91200.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0442]
 gi|170667369|gb|EDT18127.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0465]
 gi|172081057|gb|EDT66135.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0174]
 gi|190561863|gb|EDV15832.1| ribonuclease, Rne/Rng family [Bacillus anthracis Tsiankovskii-I]
 gi|227006547|gb|ACP16290.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. CDC 684]
 gi|229265599|gb|ACQ47236.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0248]
 gi|269850239|gb|AAP28377.2| ribonuclease, Rne/Rng family [Bacillus anthracis str. Ames]
          Length = 463

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 108/409 (26%), Positives = 195/409 (47%), Gaps = 21/409 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELLTYGNIED-EAVLISAPKELQKQF 423

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
           L        E +      I          + + I +    + +V   + 
Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKNS 463



 Score = 80.8 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSAY 76


>gi|229158062|ref|ZP_04286132.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 4342]
 gi|228625381|gb|EEK82138.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 4342]
          Length = 457

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 193/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I ++IV      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   + + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +I  T      +L
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISATKELQKQFL 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + +V    
Sbjct: 420 K-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|254724626|ref|ZP_05186409.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str.
           A1055]
          Length = 462

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELLTYGNIED-EAVLISAPKELQKQF 423

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + +V    
Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 80.8 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSAY 76


>gi|218905640|ref|YP_002453474.1| ribonuclease, Rne/Rng family [Bacillus cereus AH820]
 gi|218537839|gb|ACK90237.1| ribonuclease, Rne/Rng family [Bacillus cereus AH820]
          Length = 462

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GYI S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYIMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 423

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + +V    
Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSAY 76


>gi|228917084|ref|ZP_04080642.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228842502|gb|EEM87592.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 462

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 423

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + +V    
Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 80.4 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSAY 76


>gi|42783583|ref|NP_980830.1| ribonuclease [Bacillus cereus ATCC 10987]
 gi|42739512|gb|AAS43438.1| ribonuclease, Rne/Rng family [Bacillus cereus ATCC 10987]
          Length = 462

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 107/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YHIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP LV+  
Sbjct: 132 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLVHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   + + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELISYGNIED-EAVLISAPKELQKQF 423

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + ++    
Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIEXKK 462



 Score = 80.8 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSSY 76


>gi|90994402|ref|YP_536892.1| RNase E [Porphyra yezoensis]
 gi|122244629|sp|Q1XDS6|RNE_PORYE RecName: Full=Ribonuclease E homolog; Short=RNase E
 gi|90818966|dbj|BAE92335.1| RNase E [Porphyra yezoensis]
          Length = 509

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 105/328 (32%), Positives = 173/328 (52%), Gaps = 5/328 (1%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
           KK      I  ++  RQ +LVQI+KE   NKG  +T  ++L+GRY VLMP  S+   ISR
Sbjct: 74  KKKYYVNNITNILTIRQKILVQIIKEPTLNKGPRLTANITLSGRYIVLMPF-SQSICISR 132

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +R  LK     L  PA MG++ R +     +  I  + + L   W+ V++ A+N
Sbjct: 133 KIYDEDERHYLKS-LAILIKPATMGLLFRPSAVGVDEEIILSELKNLKEQWNFVQKSAIN 191

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY---ARIVRQ 338
           S +P L+Y++ +++K+ IRD Y  + + I++    G ++   ++     +       ++ 
Sbjct: 192 SYSPVLLYKDEDIVKKVIRDFYNNNTNNIVIDSNLGLKQLNYYIHTWHCNNSSTVPKIKL 251

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y +   I    GI   +      +V L   GY+ I   EA   IDVNSG         +T
Sbjct: 252 YSNNQCILDAFGINQAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGSFNNSTSARET 311

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
            L+TN  AA EIA QL++R++ G+I++DFIDME +++   + +   + L  D A+ Q+  
Sbjct: 312 VLKTNCSAATEIAYQLQIRNITGVIIIDFIDMESQRDQLQLLEHFNKELSLDDAKPQIVQ 371

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           +S  GL+E++R+R   S+ E  +    Y
Sbjct: 372 LSELGLVELTRRRQGKSLYELISSDSNY 399



 Score = 55.0 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M N ++I   H       +L   ++++L     +      +IYL  V ++   + AAF++
Sbjct: 1  MTNTIVISCLHNM---AAILYCGQIQKLVV--ANAHYQVSDIYLGCVDKIFSGINAAFIN 55

Query: 61 YGGNR-HGFLPFLEIHP---DYY 79
           G N   GF+   +  P    YY
Sbjct: 56 LGKNEYSGFIHISDTGPLKKKYY 78


>gi|47566636|ref|ZP_00237458.1| cytoplasmic axial filament protein [Bacillus cereus G9241]
 gi|47556666|gb|EAL14998.1| cytoplasmic axial filament protein [Bacillus cereus G9241]
          Length = 457

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 111/408 (27%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +IIV      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKIIVDTRSVVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVREYLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +I         +L
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + +V    
Sbjct: 420 K-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|47529976|ref|YP_021325.1| ribonuclease [Bacillus anthracis str. 'Ames Ancestor']
 gi|47505124|gb|AAT33800.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 458

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 108/409 (26%), Positives = 195/409 (47%), Gaps = 21/409 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELLTYGNIED-EAVLISAPKELQKQF 418

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
           L        E +      I          + + I +    + +V   + 
Sbjct: 419 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKNS 458



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSAY 71


>gi|196039363|ref|ZP_03106669.1| ribonuclease, Rne/Rng family [Bacillus cereus NVH0597-99]
 gi|196029990|gb|EDX68591.1| ribonuclease, Rne/Rng family [Bacillus cereus NVH0597-99]
          Length = 462

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECALCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +    + +V    
Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   ++++ G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEVVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSSY 76


>gi|225849251|ref|YP_002729415.1| ribonuclease G [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643933|gb|ACN98983.1| ribonuclease G [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 470

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 120/401 (29%), Positives = 205/401 (51%), Gaps = 12/401 (2%)

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
            + IK   ++LVQ+ +     KGA ++  LSL G++ VL+P      +IS K  +   R+
Sbjct: 78  CKNIKKGSVILVQVKRSPVSTKGAKLSCKLSLPGKFLVLLPQNKGKVSISSKYEDQDVRE 137

Query: 231 NLKEIARGLE---VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
           +LK     L     P   G+I+RT+  + T  EI  DF++L  LW N+++ A    AP +
Sbjct: 138 SLKSRITNLIKDINPDNYGIIIRTSAINATDQEIIEDFKFLKELWSNIQKEAEKKKAPAI 197

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           +YEE       IRD        I    +   +  +        +  +I    +    ++F
Sbjct: 198 IYEEPFKAFTIIRDYAANFSEIISDDIKLLKQIKEFLNNNFPNNSIKITPYRKRKESLYF 257

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407
             GI+  ++ +      L S  Y++I +TEALV IDVNSG   ++  +E+TA + N EA 
Sbjct: 258 AYGIDKLINKILSPYAYLKSGSYLVIQETEALVVIDVNSGSCNKQKNLEETAFKINTEAV 317

Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467
           +EI RQ+RLRDLAG+I++DFIDM EK++   + + LKE  KKD+  V++  ++  GL+E+
Sbjct: 318 KEIVRQIRLRDLAGIIIIDFIDMTEKEHKEKLLELLKEEFKKDKRPVKIKGLTQLGLVEL 377

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           SR+++  S+++  ++ C  C G GYIRS+  +   + +++ +         +I    S  
Sbjct: 378 SRKKLEESIVKQLSQSCQTCYGKGYIRSEDILLFELEKTLLKAKPFVKLKLMINPKLSSG 437

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           V  LL  +   + E+       + +    ++    F +EK 
Sbjct: 438 VNQLL--ESLNLKEF-------VEIEYNNKMHIDKFEVEKV 469



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  K++I  +  ++   ++L DN   EL  E     +  G+IY  KV     +++A FVD
Sbjct: 1  MDRKLVI-TTGTKKIFYLILEDNVPVELKIEDIEISKQTGSIYKGKVLSYSSAMEAYFVD 59

Query: 61 YGGNRHGFLPFLEI 74
           G ++  FLP  +I
Sbjct: 60 IGEDKEAFLPSKDI 73


>gi|228935765|ref|ZP_04098577.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823822|gb|EEM69642.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 457

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +I         +L
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + +V    
Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSAY 71


>gi|228948160|ref|ZP_04110444.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811518|gb|EEM57855.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 457

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I ++IV      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 414

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +    + +V    
Sbjct: 415 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEENKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|229093519|ref|ZP_04224621.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-42]
 gi|228689849|gb|EEL43654.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-42]
          Length = 462

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------ISAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSAY 76


>gi|118479601|ref|YP_896752.1| ribonuclease [Bacillus thuringiensis str. Al Hakam]
 gi|196044728|ref|ZP_03111962.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB108]
 gi|225866427|ref|YP_002751805.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB102]
 gi|118418826|gb|ABK87245.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis str. Al Hakam]
 gi|196024216|gb|EDX62889.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB108]
 gi|225790581|gb|ACO30798.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB102]
          Length = 462

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +    + +V    
Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 83.1 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSSY 76


>gi|196034309|ref|ZP_03101718.1| ribonuclease, Rne/Rng family [Bacillus cereus W]
 gi|195992851|gb|EDX56810.1| ribonuclease, Rne/Rng family [Bacillus cereus W]
          Length = 462

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------ISAPK 417

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +    + +V    
Sbjct: 418 ELQKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSAY 76


>gi|288871674|ref|ZP_06118545.2| cytoplasmic axial filament protein [Clostridium hathewayi DSM
           13479]
 gi|288862484|gb|EFC94782.1| cytoplasmic axial filament protein [Clostridium hathewayi DSM
           13479]
          Length = 403

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 3/305 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +    ++VQ+ ++    K   +T  L+  GRY VL     +    S+   + ++ K   +
Sbjct: 90  RVGDEIVVQVERDAVKTKAPVLTGNLNFTGRYIVLTAGKRQLGFSSKL--SDMEWKKQIK 147

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                E     G+I+RT     +   I  +   L  L+  V   A++     L+Y+    
Sbjct: 148 PILEAEKEEDFGIIVRTNAPEASFDAILEELRSLKALYRKVMGDAVHRTCLSLLYQTPPA 207

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYEDPHPIFFRSGIEV 353
               IRD     +  ++      Y   K +++   P    ++    +   P+F    +E 
Sbjct: 208 YLADIRDSLHGSLESVVTDEPDIYEAIKVYLETFQPEDLKKLTFYDDALLPLFKLFKVEK 267

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            +D      V L S GY++I  TEAL  IDVN+G+ + +  + DT ++ N EAA +IARQ
Sbjct: 268 AMDEALGKRVWLKSGGYLVIEPTEALCVIDVNTGKYSGKKNLHDTIMKINTEAAVQIARQ 327

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L+G+I++DFIDME +++ + +   L  +L KD  +  V  I+   L+E++R++IR
Sbjct: 328 LRLRNLSGIIIIDFIDMETEEDRQELLTVLSRALSKDPVKTSVVEITKLNLVEVTRKKIR 387

Query: 474 SSVLE 478
               E
Sbjct: 388 RPFHE 392



 Score = 61.5 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE--IH 75
          V  +     L+ E   ++ I GNIY+ KV  +  ++ AAFV+ G    G+L   +  IH
Sbjct: 20 VQSEGSAVSLNLEPGEERSILGNIYIGKVKNIVKNIGAAFVEIGDGCMGYLNLADGFIH 78


>gi|229123986|ref|ZP_04253178.1| Ribonuclease, Rne/Rng [Bacillus cereus 95/8201]
 gi|228659288|gb|EEL14936.1| Ribonuclease, Rne/Rng [Bacillus cereus 95/8201]
          Length = 457

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GYI S  ++A  + R +  Y        +I         +L
Sbjct: 360 KKYSLRDVLLEECAPCKATGYIMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + +V    
Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSAY 71


>gi|324328349|gb|ADY23609.1| ribonuclease E [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 462

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 107/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   + +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YHIHEGKAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   IF   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSIFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIMEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   + + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQNDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +I         +L
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELISYGNIEDEAVLISAPKELQKQFL 424

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + ++    
Sbjct: 425 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 462



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G
Sbjct: 2  KTLYINYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSSY 76


>gi|163942194|ref|YP_001647078.1| ribonuclease [Bacillus weihenstephanensis KBAB4]
 gi|163864391|gb|ABY45450.1| ribonuclease, Rne/Rng family [Bacillus weihenstephanensis KBAB4]
          Length = 469

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 111/408 (27%), Positives = 195/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 83  YRIHEGQAILVQVVKEAIDTKGPKLTAKIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 138

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++   G+EV    G I R+A    T  EI+ + + L +L++ ++       AP L+++ 
Sbjct: 139 -RQQLLGIEVEGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEDQGKAPLLLHQP 197

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E ++ +          V  Y +   +F   GI
Sbjct: 198 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGK------ERVAFYNEKSSMFNHFGI 251

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           + +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT  +TN  AAEEIA
Sbjct: 252 DREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVFRTNEMAAEEIA 311

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V ++L  +L+ DR   +V   +  G+LEM+R+R
Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRERLMIALQDDRTYTRVLGFTELGILEMTRKR 371

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 372 KKHSLRDVLLEECAPCKATGYVISNETIAYELERELITYGNIEDEAVL-------IAASK 424

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK  +  E +      I          + + I +    + +V    
Sbjct: 425 KVQKHFSQKELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469



 Score = 86.2 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV +    ++ EL ++   +++I G+IY+ ++ R    + AAFV+ G
Sbjct: 9  KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L F ++   Y
Sbjct: 68 LEKHAYLSFDDVPSSY 83


>gi|206976100|ref|ZP_03237010.1| ribonuclease, Rne/Rng family [Bacillus cereus H3081.97]
 gi|217961935|ref|YP_002340505.1| ribonuclease, Rne/Rng family [Bacillus cereus AH187]
 gi|229141184|ref|ZP_04269723.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST26]
 gi|206745852|gb|EDZ57249.1| ribonuclease, Rne/Rng family [Bacillus cereus H3081.97]
 gi|217063348|gb|ACJ77598.1| ribonuclease, Rne/Rng family [Bacillus cereus AH187]
 gi|228642225|gb|EEK98517.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST26]
          Length = 462

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 107/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   + +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YHIHEGKAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP LV+  
Sbjct: 132 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLVHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   IF   GI
Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSIFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   + + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 423

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + ++    
Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 462



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSSY 76


>gi|218514553|ref|ZP_03511393.1| probable ribonuclease protein [Rhizobium etli 8C-3]
          Length = 290

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD
Sbjct: 1   MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTHGDVTIPNDH 118
           YGGNRHGFL F EIHPDYYQIP +DRQALL  +     + +     +     D++  +  
Sbjct: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP 120

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168
            +  V   A       +E   +A  D V  V      +P    +  + + 
Sbjct: 121 DVGIVPAEAPAPVAVADEPAPAAIADAVEAVPATAEEAPAKKARPRRSRK 170


>gi|228929491|ref|ZP_04092511.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830171|gb|EEM75788.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 457

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EIK + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIKAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +I         +L
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + +V    
Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSAY 71


>gi|229198575|ref|ZP_04325277.1| Ribonuclease, Rne/Rng [Bacillus cereus m1293]
 gi|228584857|gb|EEK42973.1| Ribonuclease, Rne/Rng [Bacillus cereus m1293]
          Length = 457

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 107/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I ++IV      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   + + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 418

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
           L        E +      I          + + I +    + ++    
Sbjct: 419 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 457



 Score = 83.1 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|229186687|ref|ZP_04313846.1| Ribonuclease, Rne/Rng [Bacillus cereus BGSC 6E1]
 gi|228596790|gb|EEK54451.1| Ribonuclease, Rne/Rng [Bacillus cereus BGSC 6E1]
          Length = 457

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +       +    
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------ISAPK 412

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +    + +V    
Sbjct: 413 ELQKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457



 Score = 82.7 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|310658679|ref|YP_003936400.1| ribonuclease g [Clostridium sticklandii DSM 519]
 gi|308825457|emb|CBH21495.1| putative Ribonuclease g [Clostridium sticklandii]
          Length = 457

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 181/378 (47%), Gaps = 11/378 (2%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    LL+Q+ +    NK   +T  LSL GRY V+ P   K    S +I +   +  LK 
Sbjct: 75  KKGDELLLQVKRPGIKNKMPKLTRELSLMGRYCVMFP-YGKDINFSNRIEDDSWKLELKA 133

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             +   +   +G+++RT   + ++ EIK D + L  +W+ + + +   +   L+Y + + 
Sbjct: 134 YLKQ-SIGTSVGIVIRTLAYNVSESEIKSDIDKLFDIWNEIEKQSKLGLNNKLIYTQYDP 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I++ I     + I ++I + ++  +  ++ +K  +               +F    +  Q
Sbjct: 193 IEQFIFKSNPESIDKLICNDKQLLKHIENSLKSKIQIITPTFID---TEFLFDYLKLTSQ 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + +L Q +V + +   + +  TEA   IDVNSG +  +   E  AL+ NL AA+E  RQ+
Sbjct: 250 IRNLFQKKVEVNNNISLFVESTEACHIIDVNSGNANYKLGFEKNALEINLIAADEAVRQI 309

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
            LRDL+G+I++DF+DM+E +N   +  K+ E LKKD  +  V +I+  G++++ R+R + 
Sbjct: 310 LLRDLSGIILIDFMDMKENQNKIKLINKVTELLKKDGKKSSVTSITELGIMQIIRKRDKE 369

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           ++ E  TK C  C G G + +       +   +             +        Y+LN+
Sbjct: 370 NIYERYTKSCPLCDGLGKVLTDELYFNQLFIELSNATKHTNQKQFKIKIP-----YILNE 424

Query: 535 -KRATIVEYEARFGVSIN 551
             +  + + E    ++I 
Sbjct: 425 TTKQYLNDIENELNITIE 442


>gi|229013661|ref|ZP_04170790.1| Ribonuclease, Rne/Rng [Bacillus mycoides DSM 2048]
 gi|229062140|ref|ZP_04199464.1| Ribonuclease, Rne/Rng [Bacillus cereus AH603]
 gi|229169188|ref|ZP_04296902.1| Ribonuclease, Rne/Rng [Bacillus cereus AH621]
 gi|228614254|gb|EEK71365.1| Ribonuclease, Rne/Rng [Bacillus cereus AH621]
 gi|228717123|gb|EEL68799.1| Ribonuclease, Rne/Rng [Bacillus cereus AH603]
 gi|228747583|gb|EEL97457.1| Ribonuclease, Rne/Rng [Bacillus mycoides DSM 2048]
          Length = 469

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 106/408 (25%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  + + G+Y V MP         +   N      
Sbjct: 83  YRIHEGQAILVQVVKEAIDTKGPKLTAKIEVTGKYVVYMPYDDMRAVSRKIKNNK----- 137

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++   G+EV    G I R+A    T  EI+ + + L +L++ ++       AP L+++ 
Sbjct: 138 RRQQLLGIEVEGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEDQGKAPLLLHQP 197

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E ++ +     S+      Y +   +F   GI
Sbjct: 198 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKERVSF------YNEKSSMFNHFGI 251

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           + +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT  +TN  AAEEIA
Sbjct: 252 DREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVFRTNEMAAEEIA 311

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V ++L  +L+ DR   +V   +  G+LEM+R+R
Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRERLMIALQDDRTYTRVLGFTELGILEMTRKR 371

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++     V  + 
Sbjct: 372 KKHSLRDVLLEECAPCKATGYVISNETIAYELERELITYGNIED-EAVLIGASKKVQKHF 430

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + +V    
Sbjct: 431 SQ------KELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469



 Score = 86.6 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV +    ++ EL ++   +++I G+IY+ ++ R    + AAFV+ G
Sbjct: 9  KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L F ++   Y
Sbjct: 68 LEKHAYLSFDDVPSSY 83


>gi|301055953|ref|YP_003794164.1| ribonuclease, Rne/Rng family [Bacillus anthracis CI]
 gi|300378122|gb|ADK07026.1| ribonuclease, Rne/Rng family [Bacillus cereus biovar anthracis str.
           CI]
          Length = 462

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 76  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEAQGKAPLLLHRP 190

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E ++ +     S+      Y +   +F   GI
Sbjct: 191 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMENDRTYTRVLGFTELGILEMTRKR 364

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++    ++    
Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
             QK+ +  E +      I          + + I +    + +V    
Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71

Query: 74 IHPDY 78
          +   Y
Sbjct: 72 VPSAY 76


>gi|222097892|ref|YP_002531949.1| ribonuclease, rne/rng family [Bacillus cereus Q1]
 gi|221241950|gb|ACM14660.1| ribonuclease, Rne/Rng family [Bacillus cereus Q1]
          Length = 457

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   + +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YHIHEGKAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP LV+  
Sbjct: 127 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLVHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   IF   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSIFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   + + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +I         +L
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + ++    
Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 457



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|229135271|ref|ZP_04264067.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST196]
 gi|228648196|gb|EEL04235.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST196]
          Length = 469

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 196/408 (48%), Gaps = 21/408 (5%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 83  YRIHEGQAILVQVVKEAIDTKGPKLTAKIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 138

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++   G+EV    G I R+A    T  EI+ + + L +L++ ++       AP L+++ 
Sbjct: 139 -RQQLLGIEVEGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEDQGKAPLLLHQP 197

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +I+V      +E ++ +     S+      Y +   +F   GI
Sbjct: 198 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKERVSF------YNEKSSMFNHFGI 251

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           + +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT  +TN  AAEEIA
Sbjct: 252 DREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVFRTNEMAAEEIA 311

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V ++L  +L+ DR   +V   +  G+LEM+R+R
Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRERLMIALQDDRTYTRVLGFTELGILEMTRKR 371

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +++     V  + 
Sbjct: 372 KKHSLRDVLLEECAPCKATGYVISNETIAYELERELITYGNIED-EAVLIGASKKVQKHF 430

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579
                    E +      I          + + I +    + +V    
Sbjct: 431 SQ------KELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469



 Score = 86.2 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV +    ++ EL ++   +++I G+IY+ ++ R    + AAFV+ G
Sbjct: 9  KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L F ++   Y
Sbjct: 68 LEKHAYLSFDDVPSSY 83


>gi|46203168|ref|ZP_00208831.1| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum
          MS-1]
          Length = 135

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/81 (75%), Positives = 72/81 (88%)

Query: 2  ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           NKMLIDA+H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y
Sbjct: 4  NNKMLIDATHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 63

Query: 62 GGNRHGFLPFLEIHPDYYQIP 82
          GGNRHGFL F EIHPDYYQIP
Sbjct: 64 GGNRHGFLAFNEIHPDYYQIP 84


>gi|205374316|ref|ZP_03227114.1| ribonuclease G [Bacillus coahuilensis m4-4]
          Length = 379

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 183/386 (47%), Gaps = 8/386 (2%)

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           ++K+E  +KG  VT  +   G + V MPN        +      +++   +     ++PA
Sbjct: 1   MMKDETDSKGPKVTGLIEYKGLHMVYMPNGGYVAASKKIT---DEKRQALKEWAKTKLPA 57

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           G G++ RT         ++ +   LM+    V +  +++ AP L+ +E +    ++  L+
Sbjct: 58  GDGLLFRTVAGHCDWSTLEEELNQLMQESQLVEKQLVHTSAPALI-KETDAFLNSLSSLF 116

Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363
            K+                  +     S A  V+ +     IF    ++  + +L + ++
Sbjct: 117 EKEWKAEDTVWVDSEEMLT--VIKQHMSQACSVKLHVSAQNIFNSFNLDHSVGALMKRKL 174

Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423
            L + G+++ +  EAL SID+N+G+ST+   ++ T ++TN  AA  I  Q++LR+L+G+I
Sbjct: 175 WLENGGFIVFDYGEALTSIDINTGKSTKNQSLQQTVMETNRLAAVLICEQIKLRNLSGMI 234

Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
           ++DF++M+  ++ + + + +K+  KKD  R  V   +   +L+++R++   S+ ++ TK 
Sbjct: 235 LIDFVNMKSSRDKQEILELVKKECKKDPVRTVVVGFTELDVLQLTRKKTSISLQDAFTKE 294

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C G G +  + ++AL + R + EY  Q+    I +HT + V  Y   +  +     E
Sbjct: 295 CPTCLGYGRVYHEENIALKLERELWEY-EQHDGEKITIHTTNGVHEYFSGKNSSHKERLE 353

Query: 544 ARFGVSINVVIGIELADKLFYIEKGS 569
                 +   +  +     + I +  
Sbjct: 354 RVLHKELVFRLVDQ-PIPFYEIVRVD 378


>gi|153953512|ref|YP_001394277.1| Rne [Clostridium kluyveri DSM 555]
 gi|219854134|ref|YP_002471256.1| hypothetical protein CKR_0791 [Clostridium kluyveri NBRC 12016]
 gi|146346393|gb|EDK32929.1| Rne [Clostridium kluyveri DSM 555]
 gi|219567858|dbj|BAH05842.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 478

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 114/420 (27%), Positives = 205/420 (48%), Gaps = 14/420 (3%)

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
           +     +  +      +K   ++L +IVKE++G KGA +   +S+ G+Y VL  +   G 
Sbjct: 62  KRNAYMYIDKKFKNINLKKGDMVLGEIVKEDQGKKGAKIVKNISIPGKYCVLNSSY-NGI 120

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
             S+KI +       K I   L +PAG+G+++RT   +     +  + E L +++  V +
Sbjct: 121 QFSKKIHSE---SFKKNILESLRLPAGIGLMIRTESENIPLEVVHNEMEKLYKVYSQVIK 177

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
            A     P L+++ G ++   +R+    D   I V+ ++ Y+  +DF+K L  +   +  
Sbjct: 178 SAAYLQKPGLLFDNGGILGEVLRNKLIDDDFMIYVNNQEDYKYVEDFLKGLHNARVNLQL 237

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
                  +F    +E ++ +L   ++ L   GY++IN+TEA+  IDVNSG++ +   ++ 
Sbjct: 238 Y-TGNKNLFSYYELENKILNLRSNKIELKCGGYIVINKTEAMFVIDVNSGKNIKNGTMDK 296

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           T L TNL+AAEEIA Q+ LR+L G+I++DFIDM+  KN R V  KLKE L  D+ +  + 
Sbjct: 297 TVLITNLQAAEEIAAQIILRNLNGIILIDFIDMDNNKNKRKVMDKLKEGLLMDKNKTVIY 356

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
             +   L++++R+R+  S+ +   + C  C G G     S + L I   +     +    
Sbjct: 357 PFTELNLVQIARKRMGRSINDYIEEDCGCCGGTGKKIKLSYMTLLIKNEILNMCYEKNIE 416

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEY--EAR-----FGVSINVVIGIELADKLFYIEKGSP 570
           +I +   S    Y+    +  I +   E +     +G  I+  +   L      IE    
Sbjct: 417 DIHIDMDSFYESYIKKGTKDFIKDIGAENKRVYITYGKKISCKVEALLFASD--IEDFKD 474



 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ ++ S  +  R+++ ++  ++E   + + +K   G IY+  V  + P+++ AF+D G
Sbjct: 2  KEIFVERST-KVLRIIIRQEKIIKECFMKEQDQKAYPGEIYMGIVKNIVPAIKCAFIDIG 60

Query: 63 GNRHGFLPF 71
            R+ ++  
Sbjct: 61 CKRNAYMYI 69


>gi|148380941|ref|YP_001255482.1| ribonuclease, Rne/Rng family [Clostridium botulinum A str. ATCC
           3502]
 gi|153932956|ref|YP_001385310.1| ribonuclease [Clostridium botulinum A str. ATCC 19397]
 gi|153934768|ref|YP_001388718.1| ribonuclease [Clostridium botulinum A str. Hall]
 gi|168179480|ref|ZP_02614144.1| ribonuclease, Rne/Rng family [Clostridium botulinum NCTC 2916]
 gi|170754795|ref|YP_001782623.1| ribonuclease [Clostridium botulinum B1 str. Okra]
 gi|148290425|emb|CAL84552.1| ribonuclease G [Clostridium botulinum A str. ATCC 3502]
 gi|152929000|gb|ABS34500.1| ribonuclease, Rne/Rng family [Clostridium botulinum A str. ATCC
           19397]
 gi|152930682|gb|ABS36181.1| ribonuclease, Rne/Rng family [Clostridium botulinum A str. Hall]
 gi|169120007|gb|ACA43843.1| ribonuclease, Rne/Rng family [Clostridium botulinum B1 str. Okra]
 gi|182669830|gb|EDT81806.1| ribonuclease, Rne/Rng family [Clostridium botulinum NCTC 2916]
          Length = 479

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 106/451 (23%), Positives = 209/451 (46%), Gaps = 15/451 (3%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + ++    ++ I  D+   +V  I     +    +I SA  D+  N    
Sbjct: 7   ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK    +LV++VKE+   KG  VT  +++ GRY+VL   
Sbjct: 66  ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            ++     +     +  +        +  P  +G+++RT   + +   I  +   L +++
Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E +   +   ++++ G ++ + +RD    +IS+I ++  + Y    +F+K    + 
Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            ++    E    +     IE ++ SL   +V L   GY+II++TEA+  +DVNSG++ + 
Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           + +E T   TN+EAA+EI  Q+ LR+L G+IV+DFIDM+ +     V  KLK+ LK+D+ 
Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +   L++++R+R   ++ +   + C  C G G I S + + L I   +   L 
Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                +I +  +     Y+   +   I E E
Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+    E  R+V+  +N ++EL  E ++K    G IY+  V  + P++++AFVD G
Sbjct: 2  KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60

Query: 63 GNRHGFLPF 71
           N++ +L  
Sbjct: 61 WNKNAYLYL 69


>gi|153940954|ref|YP_001392266.1| ribonuclease [Clostridium botulinum F str. Langeland]
 gi|152936850|gb|ABS42348.1| ribonuclease, Rne/Rng family [Clostridium botulinum F str.
           Langeland]
 gi|295320260|gb|ADG00638.1| ribonuclease, Rne/Rng family [Clostridium botulinum F str. 230613]
          Length = 479

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 106/451 (23%), Positives = 209/451 (46%), Gaps = 15/451 (3%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + ++    ++ I  D+   +V  I     +    +I SA  D+  N    
Sbjct: 7   ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK    +LV++VKE+   KG  VT  +++ GRY+VL   
Sbjct: 66  ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            ++     +     +  +        +  P  +G+++RT   + +   I  +   L +++
Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINVSIENINNEIRRLYKIY 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E +   +   ++++ G ++ + +RD    +IS+I ++  + Y    +F+K    + 
Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            ++    E    +     IE ++ SL   +V L   GY+II++TEA+  +DVNSG++ + 
Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           + +E T   TN+EAA+EI  Q+ LR+L G+IV+DFIDM+ +     V  KLK+ LK+D+ 
Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +   L++++R+R   ++ +   + C  C G G I S + + L I   +   L 
Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                +I +  +     Y+   +   I E E
Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+    E  R+V+  +N ++EL  E ++K    G IY+  V  + P++++AFVD G
Sbjct: 2  KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60

Query: 63 GNRHGFLPF 71
           N++ +L  
Sbjct: 61 WNKNAYLYL 69


>gi|168181675|ref|ZP_02616339.1| ribonuclease, Rne/Rng family [Clostridium botulinum Bf]
 gi|237796442|ref|YP_002863994.1| ribonuclease, Rne/Rng family [Clostridium botulinum Ba4 str. 657]
 gi|182675207|gb|EDT87168.1| ribonuclease, Rne/Rng family [Clostridium botulinum Bf]
 gi|229263533|gb|ACQ54566.1| ribonuclease, Rne/Rng family [Clostridium botulinum Ba4 str. 657]
          Length = 479

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 107/451 (23%), Positives = 210/451 (46%), Gaps = 15/451 (3%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + ++    ++ I  D+   +V  I     +    +I SA  D+  N    
Sbjct: 7   ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK    +LV++VKE+   KG  VT  +++ GRY+VL   
Sbjct: 66  ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            ++     +     +  +        +  P  +G+++RT   + +   I  +   L +++
Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E +   +   ++++ G ++ + +RD    +IS+I ++  K Y    +F+K    + 
Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCRKDYVYVSEFLKEYGENN 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            ++    E    +     IE ++ SL   +V L   GY+II++TEA+  +DVNSG++ + 
Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           + +E T   TN+EAA+EI  Q+ LR+L G+IV+DFIDM+ +     V  KLK+ LK+D+ 
Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V + +   L++++R+R   ++ +   + C  C G G I S + + L I   +   L 
Sbjct: 352 KSVVYSFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                +I +  +     Y+   +   I E E
Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+    E  R+V+  +N ++EL  E ++K    G IY+  V  + P++++AFVD G
Sbjct: 2  KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60

Query: 63 GNRHGFLPF 71
           N++ +L  
Sbjct: 61 WNKNAYLYL 69


>gi|170759404|ref|YP_001788302.1| ribonuclease [Clostridium botulinum A3 str. Loch Maree]
 gi|169406393|gb|ACA54804.1| ribonuclease, Rne/Rng family [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 479

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 212/451 (47%), Gaps = 15/451 (3%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + ++    ++ I  D+   +V  I     +    +I SA  D+  N    
Sbjct: 7   ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK    +LV++VKE+   KG  VT  +++ GRY+VL   
Sbjct: 66  ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            ++     +      D K   EI   +  P  +G+++RT   + +  +I  +   L +++
Sbjct: 117 NNEITFSHKI----KDEKIKAEIQNNIVKPKDVGILIRTEAINTSIEDINNEIRRLYKIY 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E +   +   ++++ G ++ + +RD    +IS+I ++  + Y    +F+K    + 
Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            ++    E    +     IE ++ SL   +V L   GY+II++TEA+  +DVNSG++ + 
Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           + +E T   TN+EAA+EI  Q+ LR+L G+IV+DFIDM+ +     V  KLK+ LK+D+ 
Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +   L++++R+R   ++ +   + C  C G G I S + + L I   +   L 
Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFAYMRLLIRNEIINILN 411

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                +I +  +     Y+   +   I E E
Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+    E  R+V+  +N ++EL  E ++K    G IY+  V  + P++++AFVD G
Sbjct: 2  KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60

Query: 63 GNRHGFLPF 71
           N++ +L  
Sbjct: 61 WNKNAYLYL 69


>gi|226950414|ref|YP_002805505.1| ribonuclease, Rne/Rng family [Clostridium botulinum A2 str. Kyoto]
 gi|226842901|gb|ACO85567.1| ribonuclease, Rne/Rng family [Clostridium botulinum A2 str. Kyoto]
          Length = 479

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/451 (23%), Positives = 208/451 (46%), Gaps = 15/451 (3%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + +     ++ I  D+   +V  I     +    +I SA  D+  N    
Sbjct: 7   ERQRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK    +LV++VKE+   KG  VT  +++ GRY+VL   
Sbjct: 66  ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            ++     +     +  +        +  P  +G+++RT   + +   I  +   L +++
Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E +   +   ++++ G ++ + +RD    +IS+I ++  + Y    +F+K    + 
Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            ++    E    +     IE ++ SL   +V L   GY+II++TEA+  +DVNSG++ + 
Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           + +E T   TN+EAA+EI  Q+ LR+L G+IV+DFIDM+ +     V  KLK+ LK+D+ 
Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +   L++++R+R   ++ +   + C  C G G I S + + L I   +   L 
Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                +I +  +     Y+   +   I E E
Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442



 Score = 73.5 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+    E  R+V+   N ++EL  E ++K    G IY+  V  + P++++AFVD G
Sbjct: 2  KEIFIER-QRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60

Query: 63 GNRHGFLPF 71
           N++ +L  
Sbjct: 61 WNKNAYLYL 69


>gi|228987698|ref|ZP_04147809.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228771972|gb|EEM20427.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 457

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 185/368 (50%), Gaps = 11/368 (2%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I ++IV      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   + + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
            + S+ +   + C  CK  GY+ S  ++A  + R +  Y        +I         +L
Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419

Query: 532 LNQKRATI 539
             + +  I
Sbjct: 420 KKELQKNI 427



 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +  + ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSSY 71


>gi|322807313|emb|CBZ04887.1| cytoplasmic axial filament protein CafA and Ribonuclease G
           [Clostridium botulinum H04402 065]
          Length = 479

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/451 (23%), Positives = 208/451 (46%), Gaps = 15/451 (3%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + +     ++ I  D+   +V  I     +    +I SA  D+  N    
Sbjct: 7   ERQRENVRIVLRESNHIKELFIEKDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK    +LV++VKE+   KG  VT  +++ GRY+VL   
Sbjct: 66  ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            ++     +     +  +        +  P  +G+++RT   + +   I  +   L +++
Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E +   +   ++++ G ++ + +RD    +IS+I ++  + Y    +F+K    + 
Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            ++    E    +     IE ++ SL   +V L   GY+II++TEA+  +DVNSG++ + 
Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           + +E T   TN+EAA+EI  Q+ LR+L G+IV+DFIDM+ +     V  KLK+ LK+D+ 
Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +   L++++R+R   ++ +   + C  C G G I S + + L I   +   L 
Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                +I +  +     Y+   +   I E E
Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442



 Score = 73.9 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+    E  R+V+   N ++EL  E ++K    G IY+  V  + P++++AFVD G
Sbjct: 2  KEIFIER-QRENVRIVLRESNHIKELFIEKDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60

Query: 63 GNRHGFLPF 71
           N++ +L  
Sbjct: 61 WNKNAYLYL 69


>gi|222099826|ref|YP_002534394.1| Ribonuclease, Rne/Rng family [Thermotoga neapolitana DSM 4359]
 gi|221572216|gb|ACM23028.1| Ribonuclease, Rne/Rng family [Thermotoga neapolitana DSM 4359]
          Length = 417

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 188/377 (49%), Gaps = 12/377 (3%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               +LVQ+ K+  G KG  VT  + +A R+ V+     K   +SRKI N ++R+ L+ +
Sbjct: 32  EGAKVLVQVKKDASGKKGPQVTAQIGIADRFVVVF-PFKKVVGVSRKIENRLERRRLRSL 90

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A  L    G+GVI+RTA     + EI ++F+  M  W+ V +    S  P L+YEE + I
Sbjct: 91  AIDLRKRYGIGVIIRTAAEGVEEEEIVKNFQEAMNKWNEVLQKFRRSRKPKLLYEE-DPI 149

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
           ++ +++     I  +I +     +     ++  + +  +          +F +  I  +L
Sbjct: 150 EQIVKEKVNSKIDRLIYNE----KSILSTLEKYVQTLPKRPELVYTEGDLFEKYFIYDRL 205

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
             L    V L S G ++I++TEAL  IDVNS   T     E+ AL+TNLEA EEI RQL 
Sbjct: 206 KQLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELALKTNLEAIEEIIRQLI 265

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR++ G++VVDFI   + KN   + ++ KE  KKD  +++V   +N GLLEM+R+R    
Sbjct: 266 LRNIGGIVVVDFIKQRDPKNYEKILERFKELAKKDGTKIEVFGFTNLGLLEMTRKRTTRP 325

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
           +       C  C G G + SQ  +   + R  E+         + +  H ++  Y    K
Sbjct: 326 LDAFLFTRCPVCGGTGKVISQKVL---LKRIKEDLKKLREFDEVTLKLHPNMSGYF---K 379

Query: 536 RATIVEYEARFGVSINV 552
           +  +   E  F V I++
Sbjct: 380 KEDVKRLEREFKVKISL 396


>gi|11465677|ref|NP_053821.1| ribonuclease E [Porphyra purpurea]
 gi|1710610|sp|P51211|RNE_PORPU RecName: Full=Ribonuclease E homolog; Short=RNase E
 gi|1276677|gb|AAC08097.1| RNAse E [Porphyra purpurea]
          Length = 511

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 103/328 (31%), Positives = 170/328 (51%), Gaps = 5/328 (1%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
           KK      I  ++  RQ +LVQI+KE   NKG  +T  ++L+GRY VLMP  S+   ISR
Sbjct: 74  KKKYYINNITNILTIRQKILVQIIKEPTLNKGPRLTANITLSGRYIVLMPF-SQAICISR 132

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +R  LK     L  P  MG++ R +     +  I  +   L   W  +++ A+N
Sbjct: 133 KIYDEDERHYLKA-LAILIKPPTMGLLFRPSAIGIDEEIILSELTNLKEQWYFIQKSAIN 191

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA---RIVRQ 338
           + AP L+Y++ +++K+ IRD Y  +   I++    G ++   ++     +++     ++ 
Sbjct: 192 NCAPVLLYKDEDIVKKVIRDFYDNNTKNIVIDSNLGLKQLNYYINTWQCNFSSTIPSLQL 251

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
           Y     I     I   +      +V L   GY+ I   EA   IDVNSG         +T
Sbjct: 252 YSSNKCILDTFRINQAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGSFNNSTSARET 311

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
            L+TN  AA EIA QL++R++AG+I++DFIDME +++   + +   + L  D A+ Q+  
Sbjct: 312 VLKTNCSAATEIAYQLKIRNIAGVIIIDFIDMESQRDQLQLLEHFDKELSLDDAKPQIVQ 371

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTY 486
           +S  GL+E++R+R   S+ E  +    Y
Sbjct: 372 LSELGLVELTRRRKGKSLYELVSNDSNY 399



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M N ++I   H       +L   ++++L     +      +IYL  V ++   + AAFVD
Sbjct: 1  MTNTIVISCLHNI---AAILYCGQIQKLVV--ANAHYQVSDIYLGTVDKIFSGINAAFVD 55

Query: 61 YGGNR-HGFLPFLEIHP---DYY 79
           G N   GF+   +  P    YY
Sbjct: 56 LGKNEYSGFIHISDTGPLKKKYY 78


>gi|160902895|ref|YP_001568476.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360539|gb|ABX32153.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 471

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 218/482 (45%), Gaps = 17/482 (3%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           D +  +  S   +    A+ ++    ++   +  +   +  I     E    S+ +   +
Sbjct: 2   DEEKTMLVSKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVN 61

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
           +                             K    +LVQ+ K+    KG  ++  +SL G
Sbjct: 62  IGLGKNGFLRYRDVLDDPNQY---------KVGDKILVQVRKDGGTRKGPQLSMQISLPG 112

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           +Y V +PN+++   ISRKI    +R  L+++A+ + +     +I RT      + E++ +
Sbjct: 113 KYLVYIPNSNESIGISRKILQEKERIRLRQVAKKILID-NESIIFRTNSEGIDEKEVEVE 171

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
              + ++++++ +   +   P ++YEE + ++  +R+       +II    + +R+ K  
Sbjct: 172 LSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFRKLKKS 231

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           +K           + +    +F    I  Q++ +   ++ L   G + +++TEAL +IDV
Sbjct: 232 LKGFELKPKVEFVRGD----VFQIHNIYHQMEEIFTKKIELSGGGTITVDRTEALTAIDV 287

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           +S  +     IE+T+  TN+EAA+EIARQL+LR++ G+IVVDFIDM++  + +++   LK
Sbjct: 288 DSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTIINILK 347

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
           E  KKD+++V +   +N GLLE+ R+R    +  +    C  C G G I + S V   ++
Sbjct: 348 EESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKIIAPSLVHGRLI 407

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI-VEYEARFGVSINVVIGIELADKLF 563
           + +     +     I V   +     L       +  E E +  V + V     L    +
Sbjct: 408 KELLSSAKEIKKEKIKVIEINA-FHNLSGYLTPALTEELEKQLNVKLEVSFN-WLNPNSY 465

Query: 564 YI 565
            I
Sbjct: 466 NI 467



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 2  ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
             ML+ +  +EE R+ +L ++++ E+ FE     +  G I+L  +    PSL+A FV+ 
Sbjct: 4  EKTMLV-SKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNI 62

Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDR 86
          G  ++GFL + ++  D  Q    D+
Sbjct: 63 GLGKNGFLRYRDVLDDPNQYKVGDK 87


>gi|160938949|ref|ZP_02086300.1| hypothetical protein CLOBOL_03843 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437912|gb|EDP15672.1| hypothetical protein CLOBOL_03843 [Clostridium bolteae ATCC
           BAA-613]
          Length = 385

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 158/328 (48%), Gaps = 1/328 (0%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
              P        ++    E +K    L+VQ+ K+   +K   VT  LS  GRY VL    
Sbjct: 58  DIGPGCTGYYSLQERWKPERLKTGDELVVQVSKDAVKSKAPVVTERLSFTGRYCVLTVGK 117

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
           +     ++        +  + +   L     +G+I+RT   +  +  ++ +   LMR W 
Sbjct: 118 TGIGFSAKIRDASYKARLRELLECDLAGTKDLGIIVRTNAVTVEECAVREELAELMRTWQ 177

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            +   A   V    +Y        AIRD +   + EII    + +RE K ++++     A
Sbjct: 178 RLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEYHRELKAYLEMCQKEDA 237

Query: 334 RIVRQYEDPHPIF-FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             +  YED          +E   +      V L S GY++I  TEA+  IDVN+G+ +  
Sbjct: 238 GRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPTEAMTVIDVNTGKYSGR 297

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             ++DT  + N+EAA+EI RQ+RLR+L+G+I+VDFIDME +++ +++   L E + +D  
Sbjct: 298 KKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDRKALLAHLVEVVSRDPV 357

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLEST 480
           +  V  ++   L+E++R+++R  + E  
Sbjct: 358 KTTVVDMTALNLVELTRKKVRKPLHEQV 385



 Score = 71.5 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    L+     ++    V+ D +V +L  E +    + GNIY+ KV +V  ++ AAF+D
Sbjct: 1  MDK--LVVTRRGDKVCTAVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFID 58

Query: 61 YG 62
           G
Sbjct: 59 IG 60


>gi|152976861|ref|YP_001376378.1| ribonuclease [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025613|gb|ABS23383.1| ribonuclease, Rne/Rng family [Bacillus cytotoxicus NVH 391-98]
          Length = 463

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 195/427 (45%), Gaps = 21/427 (4%)

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
               E               +   Q +LVQ+VKE    KG  +T  +   G+Y V MP  
Sbjct: 58  NIGLEKHAYLSYDDVPKAYRVHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-Y 116

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   +SRKI +       ++    +EV    G I R+A    T  +IK + E+  +L++
Sbjct: 117 DEMRAVSRKIKSQK----KRKDLFAIEVEGLGGYIFRSACEKGTTADIKAEIEHFQQLFE 172

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++       AP LV+     + R  ++   + I +++V   +  RE ++ +        
Sbjct: 173 ELKRKERCGKAPVLVHRPATFLDRIFQENPTESIEKVVVDSREPVRELENKLGK------ 226

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             V  Y +   +F   GIE +++   Q  V L +  Y+II Q E +  IDVN+G+ T + 
Sbjct: 227 EKVFFYREKSSMFSHYGIEREIEKALQKIVWLQNGSYLIIEQMETMTVIDVNTGKFTGKQ 286

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            ++DT ++TN  A EEIARQLRLRD+ G+I++DFI+M+++++   + +KL  +L+ DR  
Sbjct: 287 DLQDTVVRTNEIAVEEIARQLRLRDIGGMILIDFINMKKEEDQERIREKLIIALQDDRTY 346

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
            +V   +  G+LEM+R+R + S+ +   + C  C   GY  S  ++A  + R +  Y   
Sbjct: 347 TRVLGFTELGILEMTRKRKKQSLRDILLEDCAKCMATGYSISNETIAYELERELLSYSHM 406

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                +++     V    L        E +      I          + + + +    Q 
Sbjct: 407 ED-EAVLIAAPKAVQKIFLQ------KELQKNIPFQIYFKEEEM---EKYALIRFGTKQE 456

Query: 574 LVNTGHK 580
           +++  + 
Sbjct: 457 MIDRKNS 463



 Score = 81.2 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+ +   E RV +    ++ EL +     ++I G IY+ +V R    + AAFV+ G
Sbjct: 2  KTLYINYT-GSEKRVAIEEKQKIVELSWHRNGDEEIVGYIYVGRVVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEI 74
            +H +L + ++
Sbjct: 61 LEKHAYLSYDDV 72


>gi|253581848|ref|ZP_04859072.1| ribonuclease G and E [Fusobacterium varium ATCC 27725]
 gi|251836197|gb|EES64734.1| ribonuclease G and E [Fusobacterium varium ATCC 27725]
          Length = 489

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/509 (23%), Positives = 227/509 (44%), Gaps = 46/509 (9%)

Query: 74  IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133
           I+ D +Q     R A++++  + +   E   +   +G +      ++      A  +   
Sbjct: 6   INIDEFQ----SRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNIGL 61

Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193
           E+   +         V D++    + +         I++++     ++VQI+ E RG KG
Sbjct: 62  EKNGFL--------YVNDLREFEEKYLDGILNSSRPIEDILNVGDDVVVQILNEPRGTKG 113

Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253
           A VTT+ ++ G+Y VLMPN        +        +   E       P  MGVI+RTA 
Sbjct: 114 ARVTTHFTIPGKYLVLMPNNDHIAISKKIKDEKERER--LESIFKEIKPENMGVIIRTAA 171

Query: 254 ASRT--------------KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
             ++                +I++  +               +    ++Y++  +I   +
Sbjct: 172 FGKSEFHFEREIEYLVKKWEDIEKKIKG--------------AKIGEVLYKDNGIITTVL 217

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV---RQYEDPHPIFFRSGIEVQLD 356
           RD++  DI E+IV  E  Y E  D++        +      +      IF   GI  ++D
Sbjct: 218 RDIFSNDIDELIVDNEDVYWEVIDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEID 277

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
                 V L   GY++I +TEAL+SIDVN+G++T    +E+T + TN+EAA+EI RQLRL
Sbjct: 278 KALNEVVWLECGGYLVIQKTEALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRL 337

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           R+  G+I++DFIDM  +++   V + L++ L+KDR +  +   ++ GL+EM+R+R    +
Sbjct: 338 RNFGGIIIIDFIDMRVEEDKIKVLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPL 397

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
                +VC  C G G I+S+ ++   +++ ++          I V    +++        
Sbjct: 398 AYYFQEVCPCCNGTGKIKSKDALIHELMKEIKICSEDKDISTIKVRLSKNLIESFKEIYF 457

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYI 565
             I E+      +I + +        + I
Sbjct: 458 EIIKEFLKMKKKAIELEVDTN-NSCQYEI 485



 Score = 94.3 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          N+++I+     ++R  ++ D +V E+  E E + +I G+IY  KV  V P +++AFV+ G
Sbjct: 2  NQIVINIDE-FQSRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNIG 60

Query: 63 GNRHGFLPFLEI 74
            ++GFL   ++
Sbjct: 61 LEKNGFLYVNDL 72


>gi|187932568|ref|YP_001884781.1| ribonuclease, Rne/Rng family [Clostridium botulinum B str. Eklund
           17B]
 gi|187720721|gb|ACD21942.1| ribonuclease, Rne/Rng family [Clostridium botulinum B str. Eklund
           17B]
          Length = 482

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 210/470 (44%), Gaps = 21/470 (4%)

Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
            ND  +E +           E         + +                +  +      I
Sbjct: 19  ENDKLVESIVEENKNEPIIGEIYKARVKKILPAINSIFVDLGLNKEGYLYYSEELKNNGI 78

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K  + +LV++VKE   +KGA +TT +S+ G+Y+VL     KG   S++I +   +K + E
Sbjct: 79  KKGEDILVEVVKEPINDKGAKLTTKVSIPGKYAVLNC-YDKGIHFSKRIVDEEKKKEILE 137

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             + L     +G+ +RT   +     +K + + L   + N+ +    S     VY E   
Sbjct: 138 NLQELN---DVGITIRTEAINTEVKTLKNEIDRLYNEFLNINKSLKYSTQVKKVYGEDLS 194

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           + R +R+   ++  +I V  +K + + +DF K        ++  Y     IF   G+E +
Sbjct: 195 LFRILRNTIGQNPVKIYVDNKKDFEKIEDFSKD---ENNVVLELYSGLRNIFDFYGLEKE 251

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           L  L   +V LP  GY+II++TEA+  IDVNSG++ +    + T L+TNLEAA+EI  Q+
Sbjct: 252 LLKLRHNKVNLPCGGYIIIDKTEAMYVIDVNSGKNIKGRSFDKTILETNLEAAKEIGNQV 311

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           ++R+L+G+IV+DFIDM +K     V K+L+ESL  D+   ++   +   L+++SR+R   
Sbjct: 312 KVRNLSGIIVIDFIDMRDKSQKNIVMKELEESLSSDKGNTKIFKFTELDLVQISRRRQGK 371

Query: 475 SVLESTTKVCTYCKGAGYIRS----QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           S+ E   + C  C G G I      Q  +   ILR  E+  +      I       +   
Sbjct: 372 SIYEYMEENCMTCNGHGRILKLSYIQDLIKNEILRIKEDNTISSFYIEIDNVYKERIKGD 431

Query: 531 LLN--------QKRATIVEYEARFGVSIN--VVIGIELADKLFYIEKGSP 570
           L N         K   +   E   G  I   +    ++  + + I +   
Sbjct: 432 LFNFLKEIDCLDKEIYLNYIENMEGFKIEPLIFQSQKVNLEKYKITQFDT 481



 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+       R+ +  ++++ E   E    + I G IY A+V ++ P++ + FVD G
Sbjct: 2  KEIFIERKESL-LRIGIRENDKLVESIVEENKNEPIIGEIYKARVKKILPAINSIFVDLG 60

Query: 63 GNRHGFLPFLE 73
           N+ G+L + E
Sbjct: 61 LNKEGYLYYSE 71


>gi|187778428|ref|ZP_02994901.1| hypothetical protein CLOSPO_02022 [Clostridium sporogenes ATCC
           15579]
 gi|187772053|gb|EDU35855.1| hypothetical protein CLOSPO_02022 [Clostridium sporogenes ATCC
           15579]
          Length = 479

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 112/451 (24%), Positives = 210/451 (46%), Gaps = 15/451 (3%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + ++    ++ I  D+   +V  I     +    +I SA  D+  N    
Sbjct: 7   ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK    +LV++VKE+   KG  VT  +++ GRY+VL   
Sbjct: 66  ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            ++     +      D K  +EI   +  P  +G+++RT   + +   I  +   L  ++
Sbjct: 117 NNEITFSHKI----KDEKIKREIQNNIVKPKEVGILIRTEAINASIENINDEIRRLSDVY 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            ++ E +   +   L+++ G ++ + +RD    +IS+I ++  + Y    +F+K    + 
Sbjct: 173 SSLIEKSKYKMNTGLLFQNGGIVGKILRDKLTDNISKIYLNSREDYVYVSEFLKEYGENN 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
            ++    E    +     IE ++ SL   +V L   GY+II++TEA+  +DVNSG++ + 
Sbjct: 233 IKLNIY-EGERNLLDYYAIEKEILSLRNKKVYLDCGGYIIIDKTEAMYVVDVNSGKNVKG 291

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
           + +E T   TN+EAA+EI  Q+ LR+L G+IV+DFIDM  +     V  KLK+ LK+D+ 
Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMNNENLKEKVLDKLKQGLKRDKN 351

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  V   +   L++++R+R   ++ +   + C  C G G I S S + L I   +   L 
Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFSYMKLLIRNEIINILN 411

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                +I +  +     Y+   +   I E E
Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEVE 442



 Score = 75.8 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+    E  R+V+  +N ++EL  E ++K    G IY+  V  + P++++AFVD G
Sbjct: 2  KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60

Query: 63 GNRHGFLPF 71
           N++ +L  
Sbjct: 61 WNKNAYLYL 69


>gi|210623761|ref|ZP_03294021.1| hypothetical protein CLOHIR_01972 [Clostridium hiranonis DSM 13275]
 gi|210153343|gb|EEA84349.1| hypothetical protein CLOHIR_01972 [Clostridium hiranonis DSM 13275]
          Length = 469

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 190/393 (48%), Gaps = 6/393 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    +LVQ++K+E G KGA ++  +S +GRY V +P+ ++    ++ +      +  + 
Sbjct: 79  KTGDDVLVQVIKDEIGTKGAKISQEISFSGRYLVYIPSNTRVTMSNKIVDEKERLRLKR- 137

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                      G I+RT     +  + K D + L  L+ NV +       P L+Y   + 
Sbjct: 138 -LFYTNCKNETGYIIRTEAQGCSMEDFKNDIKELKSLYANVEKEFKRGKGPKLLYTASDT 196

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             + +RD    +I  II + E  Y + ++ +K +   Y  +++  +    +F   G+E Q
Sbjct: 197 AIKYVRDNISDEIETIITNDENKYNDLREILKEIDRKYLDVLKL-DKNVDVFNVYGVEAQ 255

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           L+     +V L S GY+II +TEAL  IDVNSG+ T    + +TA++ N EAA EI  Q+
Sbjct: 256 LNRYLSKKVWLKSGGYLIIEKTEALTVIDVNSGKFTGGAKLANTAMKINEEAAREIVNQI 315

Query: 415 RLRDLAGLIVVDFIDMEE-KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
            +RD+AG+I+VDFID +    + + +   +KE  KKD+ + +V  +++ GL+E+SR+R +
Sbjct: 316 IVRDIAGIIIVDFIDDQIVSSSKKKLLNIMKEEFKKDKRKNEVKGMTSLGLVEISRRREK 375

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
             + +     C  C       S +S+   I + +           + +  +  +   ++N
Sbjct: 376 EPLEDYFFSDCKRCGSKYGDLSINSILDLIEKKIMNISRNTVYKKVKLVFNPSIKPNIIN 435

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
                I +   ++ V I +        K F +E
Sbjct: 436 NYMNIIKKIGLKYRVEIEIA--ESTDVKDFAVE 466



 Score = 83.9 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I++    + +  +L D ++EE+  ++  +K I  NIY   V +V P + A FVD G
Sbjct: 5  KKIIIESLESSQ-KTAILNDGKLEEIYIDNTIEKSIVSNIYRGVVQKVLPGMNACFVDIG 63

Query: 63 GNRHGFL 69
            ++ +L
Sbjct: 64 KEKNAYL 70


>gi|260496869|ref|ZP_05815989.1| ribonuclease G [Fusobacterium sp. 3_1_33]
 gi|260196611|gb|EEW94138.1| ribonuclease G [Fusobacterium sp. 3_1_33]
          Length = 458

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/454 (27%), Positives = 210/454 (46%), Gaps = 16/454 (3%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      E   
Sbjct: 7   LSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+P  SK  +ISR
Sbjct: 67  LLSFENKKNIPKFNIDDKLIVQTESEPRDEKGAKLTLDYSINGENLVLLP-KSKNISISR 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK I   +      G+ILRT    +++  +  ++  L  + + + +    
Sbjct: 126 KIKDIEEINRLKNIFLSI----DNGLILRTNSEGKSEESLLEEYRKLEDINNQLNKDFEK 181

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYE 340
                L   + N I +    L+   I E I+  E  + E K F++        + +R+Y 
Sbjct: 182 INIGLLY--DVNSILKKAATLFDDMIEEFIIDDEHIFEEIKIFLEETGKKDLIKKLRKYF 239

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
               IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++      ++   
Sbjct: 240 KDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNIGNKTSQELIF 299

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           QTNLEA +EIARQ++LR+LAG+I+VDFIDM++  + + V ++ K+ L +D+A +     +
Sbjct: 300 QTNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKKVLEEFKKYLSEDKAEINSVEYT 359

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
           N GL++ +R+R    +     + C YC+G GY  S+  + L++L  +   +       I+
Sbjct: 360 NLGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKIV 419

Query: 521 VHTHSDVV----LYLLNQKRATIVEYEARFGVSI 550
           +    D++     Y+ N K   I   E      I
Sbjct: 420 IRAKKDIIKELNKYINNNK---IKYIEDNNFYKI 450



 Score = 81.2 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 21/176 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++ +L DN+++E+  E  ++K+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++  L F                      N        + D +     + P D    +
Sbjct: 62  LEKNALLSF---------------------ENKKNIPKFNIDDKLIVQTESEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           +    + + E       S N  +   ++D++  +             I       +
Sbjct: 101 LTLDYSINGENLVLLPKSKNISISRKIKDIEEINRLKNIFLSIDNGLILRTNSEGK 156


>gi|10880471|gb|AAG24267.1|AF139612_4 CafA [Neisseria gonorrhoeae]
          Length = 232

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 124/229 (54%)

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             ++   P+F    IE ++    Q  V L    Y+II  TEA+ +IDVN+G        +
Sbjct: 1   ELFKGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFD 60

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
           +T L+TNLEA   IAR+LRLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +
Sbjct: 61  ETILRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTL 120

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
              ++ GL+E++R+R R ++ +   + C  C+G G +++  +V   I R +     +Y A
Sbjct: 121 RGFTSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDA 180

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +  +    +V+   L+++  ++       G  I++ +      + + I
Sbjct: 181 ESFRILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 229


>gi|218754175|ref|ZP_03532971.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503]
 gi|289762614|ref|ZP_06521992.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503]
 gi|289710120|gb|EFD74136.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503]
          Length = 463

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 154/291 (52%), Gaps = 16/291 (5%)

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV-----YEEGNL 294
            VP+  GVI+RTA     + +I+ D   L   W+ +   A  +           YEE ++
Sbjct: 1   MVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDV 60

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI--------F 346
           + + IRDL+ +D   +IVSG++ +    +++  + P     + +YE             F
Sbjct: 61  LVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVF 120

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLE 405
               I+ QL      +V LPS G ++I++TEA+  IDVN+G+ T     +E T  + NLE
Sbjct: 121 TVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLE 180

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AAEEI RQLRLRD+ G++V+DFIDM  + N   V ++L ESL +DR R QV  +++ GL+
Sbjct: 181 AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLV 240

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS--VALSILRSVEEYLLQY 514
           +++R+R+ + ++E+ +  C  C G G +        A +  R  E    + 
Sbjct: 241 QLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRG 291


>gi|239623843|ref|ZP_04666874.1| ribonuclease G [Clostridiales bacterium 1_7_47_FAA]
 gi|239521874|gb|EEQ61740.1| ribonuclease G [Clostridiales bacterium 1_7_47FAA]
          Length = 393

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    ++VQ+ ++    K   +T  L+  GRY VL    + G   S KI +   +  ++ 
Sbjct: 86  KAGDEIVVQVSRDAVKTKAPVLTGKLAFTGRYCVLTAGKT-GVGFSNKIGDNKYKARVRS 144

Query: 235 IARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           +        G   G+I+RT GA  T   + +++  L  ++  + + A        +Y   
Sbjct: 145 MLNEALAEDGDRFGIIVRTNGAGATDEVLLQEYRQLKDMYLKLSKEASCRTCYSCIYRAL 204

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF-FRSGI 351
                AIRD Y   +  I+      Y E KD+++      A  +  YED          +
Sbjct: 205 PGYIAAIRDSYSGTLDGIVTDIPAYYEELKDYLEKYQAEDADKLTLYEDKLLPLSKLYSL 264

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           +  L+      V L S GY++I  TEA+V IDVN+G+ + +  ++DT  + N+EAA+EI 
Sbjct: 265 DSALEHALNKHVWLKSGGYLVIEPTEAMVVIDVNTGKYSGKKKMQDTICRINMEAADEIG 324

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLR+L+G+I++DFIDME +++   + + L + + KD  +  V  ++   L+E++R++
Sbjct: 325 RQLRLRNLSGIILIDFIDMEREEDREMLMRHLGDVVSKDPVKTTVVDMTRLNLVEVTRKK 384

Query: 472 IRSSVLEST 480
           +R  + E  
Sbjct: 385 VRKPLYEQI 393


>gi|15606495|ref|NP_213875.1| cytoplasmic axial filament protein [Aquifex aeolicus VF5]
 gi|2983706|gb|AAC07269.1| cytoplasmic axial filament protein [Aquifex aeolicus VF5]
          Length = 458

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 103/374 (27%), Positives = 188/374 (50%), Gaps = 15/374 (4%)

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           ++    + ++    ++VQ+ ++ER  KGA VT  +S+ G+Y V  P T K    S+K+  
Sbjct: 71  QEKKNCKNLRIGDSVIVQLKRKERDLKGAKVTCKVSIPGKYIVYFPETKK-LNFSKKLKG 129

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               ++LK+I +        GVI+R +  S TK +I ++ + L   W++++E A      
Sbjct: 130 FAFTEDLKKILKEELNDRE-GVIIRASAISATKEQILKELQELRNKWESLKEKAKKVNKG 188

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
            L   +   IK  +          I            + ++    S    +R       +
Sbjct: 189 ILEEGQPQFIKTIL-----DYWGFIKNIYVDNGDVWGEIVEFFGDSIKHKLRYVNTIDTL 243

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
                +   +D L    V L + G+++I QTEAL SIDVNSG  T    +E+TA   NLE
Sbjct: 244 PGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSIDVNSGE-TCGKSLEETAYNVNLE 302

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           A +E+A+Q++ R+L+G+I+VD IDM+++K   S+  ++K+  + +  R+++  I+  GLL
Sbjct: 303 ALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSEVKKIFEGEGLRIKIYGITKLGLL 362

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
           EM+++    S+ E   + C +C+G G+++S+      IL ++E+ L +     I++  H 
Sbjct: 363 EMTKKWESESIYEVIGETCPHCQGKGFVKSKEF----ILHTLEKALEKTRGKKIVLKVHP 418

Query: 526 DVV---LYLLNQKR 536
            V       +N+K 
Sbjct: 419 SVAKTVEEFINEKN 432


>gi|78044652|ref|YP_359227.1| ribonuclease [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996767|gb|ABB15666.1| ribonuclease, Rne/Rng family [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 392

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 165/321 (51%), Gaps = 10/321 (3%)

Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232
            +K   ++LV++VK     KGA ++T +SL GR  V  P         +   +  +  + 
Sbjct: 74  NVKPGDVVLVRVVKNPTAQKGAKLSTVISLPGRNLVYFPQKEMKGISRKLTEDKREYYHR 133

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
                      G  ++   AG      ++ ++ + L   W  + E +  + AP L+Y+E 
Sbjct: 134 ---VLENLNLPGGFIVRTLAGEE---EDLLQEAKRLYEEWQGILERSKTAQAPALLYKED 187

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
           +L    +R+L  KD + + V   +     + F +        I + +     +     + 
Sbjct: 188 DLFTWCLRELLDKDFTALYVDDFELLEIGQKFRERFRVLLPPIYKSFN----VMEEFNLI 243

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
             ++ L +  V L + G ++I +TEAL +IDVNSG+ T +  +++TA + NLEAA EIA+
Sbjct: 244 RTMEKLTRERVWLKNGGILVIEKTEALTAIDVNSGKFTGKKDLKETAFKINLEAAREIAK 303

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           Q+RLR++ G+IVVDFI + E++    + + ++E   +D+A+V++   +  GL+E++RQ+I
Sbjct: 304 QIRLRNIGGIIVVDFISLLEEERWEEILRVMEEEFLRDKAKVKITGKTPSGLVEIARQKI 363

Query: 473 RSSVLESTTKVCTYCKGAGYI 493
             S+ E  T  C+ C+G G I
Sbjct: 364 GLSIGELFTHECSVCQGTGRI 384



 Score = 74.2 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   ++      E     V+ D     L  +   ++    +IYL KV +V P LQAAFV+
Sbjct: 1  MTKTLVFHR-QPEYDLAAVMVDGSPFSLFAKRRDEQTQINDIYLGKVEKVVPGLQAAFVN 59

Query: 61 YGGNRHGFLPFLEI 74
           G  ++G+LP  EI
Sbjct: 60 LGLAKNGYLPLDEI 73


>gi|297583759|ref|YP_003699539.1| ribonuclease, Rne/Rng family [Bacillus selenitireducens MLS10]
 gi|297142216|gb|ADH98973.1| ribonuclease, Rne/Rng family [Bacillus selenitireducens MLS10]
          Length = 495

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 104/422 (24%), Positives = 193/422 (45%), Gaps = 9/422 (2%)

Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
           T+    + A    + + +       E           I   +     LL+++++     K
Sbjct: 47  TDIHDGMDAAFIDIGSDKRGFLHKSELNRPDKGEDVPISRQVTKGAYLLLEVLRPGTDTK 106

Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252
           G  +T  +S +G+Y+V MP  S+   +S+K+++   R++ +   +   +    G+I+RT 
Sbjct: 107 GPKLTEKISFSGKYAVYMPF-SRYVAVSKKMSSESVRESWRAFGKE-RLQEDEGLIIRTN 164

Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN--LIKRAIRDLYCKDISEI 310
                   I R+ + L    D V+   L+              L  R  RD    + +E+
Sbjct: 165 AEEEDPEVIDREIDLLRAKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEV 224

Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
           I  G + Y E     +++    +    +             E  +    +  V LP+ G 
Sbjct: 225 ICDGRQLYEELVREREVMPLGASVSYTRENVAR----LYEFERMMMQTVRPYVWLPNGGS 280

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           ++I +TEA+  IDVNSGR T +  +  TA QTNL+AA+ IAR+LRLR+++G+I++DFIDM
Sbjct: 281 LLIEETEAMTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDM 340

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
           +   + + V K L++  K+DR RV V   ++ GL+EM+R++ R  + E   + C  C G 
Sbjct: 341 DTDDDRKDVLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGT 400

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
           G + + +     +     +  +Q    ++ +  +  +   L + +       +AR GV +
Sbjct: 401 GRVDTANEQLYRVS-EALQEAVQGKTESLWLDLNVRLYEALTSNQEDWASAIKARIGVRV 459

Query: 551 NV 552
            V
Sbjct: 460 YV 461



 Score = 58.1 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 13 EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72
           E R  V+ D RV E        +   G I   ++T +   + AAF+D G ++ GFL   
Sbjct: 12 TEARGAVIEDGRVTEWLMSPGPTRLETGMIITGQITDIHDGMDAAFIDIGSDKRGFLHKS 71

Query: 73 EIH-PD 77
          E++ PD
Sbjct: 72 ELNRPD 77


>gi|188589242|ref|YP_001919959.1| ribonuclease, Rne/Rng family [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251777617|ref|ZP_04820537.1| ribonuclease, Rne/Rng family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499523|gb|ACD52659.1| ribonuclease, Rne/Rng family [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243081932|gb|EES47822.1| ribonuclease, Rne/Rng family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 482

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 217/492 (44%), Gaps = 31/492 (6%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
                     + ++    +  +  + +   +  I     +    +I S   D+  N E  
Sbjct: 7   ERKESLLRIGIRENEKLVESIVEENKNEPIIGEIYKGRVKKILPAINSIFVDLGLNKEG- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +  +      IK  + +LV++VKE   +KGA +TT +S+ G+Y+VL   
Sbjct: 66  ---------YLYYSEELKSNGIKKGEDILVEVVKEPINDKGAKLTTKVSIPGKYAVLNC- 115

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
             KG   S++I +   +K + E  + L     +G+ +RT   +     +K + + +   +
Sbjct: 116 YDKGINFSKRIVDEEKKKEISENLQELN---DVGITIRTEAINTEIKTLKSEIDRMYNEF 172

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            N+ +    S     VY E   + R +R+   ++  +I V  ++ + + KDF K      
Sbjct: 173 LNINKSLKYSTEVKKVYGEDLSLFRILRNTIGQNSVKIYVDNKEDFEKIKDFSKD---EN 229

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             ++  Y     IF   G+E +L  L   +V LP  GY++I++TEA+  IDVNSG++ + 
Sbjct: 230 NVVLELYSGVRNIFDFYGLEKELLKLRHNKVNLPCGGYIVIDKTEAMYVIDVNSGKNIKG 289

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
              + T L+TNLEAA+EI  Q+++R+L+G+IV+DFIDM +K     V + L+ES   D+ 
Sbjct: 290 RSFDKTILETNLEAAKEIGNQVKVRNLSGIIVIDFIDMRDKSQKNIVMRALEESFSSDKG 349

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS----VALSILRSVE 508
             ++   +   L+++SR+R   S+ E   + C  C G G I   S     +   ILR  E
Sbjct: 350 NTKIFRFTELDLVQISRRRQGKSIYEYMEEECMTCNGHGRILKLSYIQGLIKNEILRIKE 409

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLN--------QKRATIVEYEARFGVSIN--VVIGIEL 558
           +  +      I       +   L N         K   +   E   G  I   +    ++
Sbjct: 410 DNTISSFYIEIDNVYKERIKGDLFNFLKEIDCLDKEIYLNYIENMEGFKIEPLIFQSQKV 469

Query: 559 ADKLFYIEKGSP 570
             + + I +   
Sbjct: 470 NLEKYKITQFDT 481



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+       R+ +  + ++ E   E    + I G IY  +V ++ P++ + FVD G
Sbjct: 2  KEIFIERKESL-LRIGIRENEKLVESIVEENKNEPIIGEIYKGRVKKILPAINSIFVDLG 60

Query: 63 GNRHGFLPFLE 73
           N+ G+L + E
Sbjct: 61 LNKEGYLYYSE 71


>gi|19703499|ref|NP_603061.1| ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713587|gb|AAL94360.1| Ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 458

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 117/450 (26%), Positives = 204/450 (45%), Gaps = 8/450 (1%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      E   
Sbjct: 7   LSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNGELIFVDIGSEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+P  SK  +IS+
Sbjct: 67  LLSFENKKNIPKFNIDDKLIVQTETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISK 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK     + +    G+ILRT    +T+  +  +++  ++  +N       
Sbjct: 126 KIKDVEEVNRLK----NIFLGIDNGLILRTNSEGKTEESLLEEYKK-LKNIENRINRDFE 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +   L+Y+  +++K+A           II              +       + +R+Y  
Sbjct: 181 KINIGLLYDVNSILKKAESLFDDTIEEFIIDDKNIFEEIKVLLEETGKKDLIKKLRKYFK 240

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++T     ++   Q
Sbjct: 241 GEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEA +EIARQ++LR+LAG+I++DFIDM++  + + V ++ K+ L KDR  +     +N
Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIIDFIDMKKISDRKRVLEEFKKYLNKDRIEINSLEYTN 360

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++ +R+R    +     + C YC+G GY  S+  + L++L  +   +       I++
Sbjct: 361 LGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNAQIKSQDIKKIVI 420

Query: 522 HTHSDVVLYLLNQ-KRATIVEYEARFGVSI 550
            T  D++  L        I   E      I
Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIEDNNFYKI 450



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 21/176 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++ +L DN+++E+  E  ++K+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNGELIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++  L F                      N        + D +     T P D    +
Sbjct: 62  SEKNALLSF---------------------ENKKNIPKFNIDDKLIVQTETEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           +    + + E       S N  +   ++DV+  +             I       +
Sbjct: 101 LTLDYSINGENLVLLPKSKNLSISKKIKDVEEVNRLKNIFLGIDNGLILRTNSEGK 156


>gi|225418730|ref|ZP_03761919.1| hypothetical protein CLOSTASPAR_05954 [Clostridium asparagiforme
           DSM 15981]
 gi|225041738|gb|EEG51984.1| hypothetical protein CLOSTASPAR_05954 [Clostridium asparagiforme
           DSM 15981]
          Length = 400

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 145/308 (47%), Gaps = 3/308 (0%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR--KITNPVDRKNLK 233
               L++Q+ K+    K   VT  LS AGRY VL          SR    +     + + 
Sbjct: 87  PGDELIIQVEKDAVKTKAPVVTCRLSFAGRYCVLTAGKPGVNFSSRLTDQSFKRRVRPVL 146

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           E A         G+I+RT      + ++  +   L   +++V+    + V    +Y    
Sbjct: 147 EEAVRARGHEACGLIVRTNAGEAGEEQLLAELAVLFDQYESVQNQGNHRVCYSCLYRSLP 206

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHPIFFRSGIE 352
               ++RD     +  ++      Y E K ++         ++    +    +     ++
Sbjct: 207 GYMASVRDSLGGSLEAVLTDQADVYEELKHYLALNQQKDLEKLSFYDDPLLSLGALYSLD 266

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
             ++      V L S GY++I  TEA+V IDVN+G+ + +  +++T L+ NLEAA EIA 
Sbjct: 267 KVMEEALGKRVWLKSGGYLVIEPTEAMVVIDVNTGKYSGKKTLQETILKINLEAAVEIAH 326

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           Q+RLR+L+G+I+VDFIDME  +N   + K L E++  D  +  V  ++   L+EM+R+++
Sbjct: 327 QIRLRNLSGIILVDFIDMEPGENREILLKALSEAVSADPVKTAVVDMTKLNLVEMTRKKV 386

Query: 473 RSSVLEST 480
           R  + E  
Sbjct: 387 RRPLHEQV 394



 Score = 63.5 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71
           V    +   L  E E    +  NIY+ KV +V  ++ AAFV+ GG R G+LP 
Sbjct: 16 AVFSGRKPLALTLEPEQGGSLLNNIYIGKVQKVVKNISAAFVEIGGGRVGYLPL 69


>gi|262068134|ref|ZP_06027746.1| ribonuclease G [Fusobacterium periodonticum ATCC 33693]
 gi|291378222|gb|EFE85740.1| ribonuclease G [Fusobacterium periodonticum ATCC 33693]
          Length = 458

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/444 (26%), Positives = 207/444 (46%), Gaps = 11/444 (2%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++ +     + +  D+ LEE+       +E           D+++  E +      E   
Sbjct: 7   LSKNTYETKLALLEDNKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQI  E R  KGA +T   S+ G   VL+P  SK  +IS+
Sbjct: 67  FLSFENKKNIPKFNISDSLIVQIETEARDEKGARLTLDYSINGENLVLLP-KSKNLSISK 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI N  +   LK     + +    G+ILRT    +T+  +  +++  ++  +N       
Sbjct: 126 KIKNIEEVNRLK----NIFLNIDNGLILRTNSEGKTEESLLEEYK-ALKNIENKVNKEFE 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +   L+Y+  +++KRA+  L       II              ++      + +R+Y  
Sbjct: 181 KINIGLLYDVNSILKRAVTLLDDSIEEFIIDDKTIFEEIKVLLEEVGKKDLIKKLRKYFK 240

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++T     ++   Q
Sbjct: 241 DEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEA +EIARQ++LR+LAG+I+VDFIDM++  + + + ++ K  L +DR  +     +N
Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKISDRKKLLEEFKRYLSEDRIEISSLEYTN 360

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++ +R+R    +     + C YC+G GY  S+  + L++L  +   +       I+V
Sbjct: 361 LGLIQFTRKRQGKELALYYREKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKILV 420

Query: 522 HTHSDVV----LYLLNQKRATIVE 541
            T  D++     Y+ N K   I +
Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIED 444



 Score = 81.6 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 22/178 (12%)

Query: 1   MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
           M+   LI + +  ET++ +L DN++EE+  E E +K+I GNIY  K+  +    +  FVD
Sbjct: 1   MSK-CLILSKNTYETKLALLEDNKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVD 59

Query: 61  YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
            G  ++ FL F                      N        ++D +     T   D   
Sbjct: 60  IGLEKNAFLSF---------------------ENKKNIPKFNISDSLIVQIETEARDEKG 98

Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
             +    + + E       S N  +   +++++  +             I       +
Sbjct: 99  ARLTLDYSINGENLVLLPKSKNLSISKKIKNIEEVNRLKNIFLNIDNGLILRTNSEGK 156


>gi|300853923|ref|YP_003778907.1| putative ribonuclease E [Clostridium ljungdahlii DSM 13528]
 gi|300434038|gb|ADK13805.1| predicted ribonuclease E [Clostridium ljungdahlii DSM 13528]
          Length = 479

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 114/473 (24%), Positives = 211/473 (44%), Gaps = 9/473 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156
           +      + +         ND   E        +    E  I    N V +        +
Sbjct: 2   EEIFVERSAEGFLRIAIKENDILKECHIQEERGNAYPGEVYIGVVKNVVPAIKCAFIDIN 61

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
                  +         +K  + +LVQ+ KE+ G KGA V   +SL G+Y VL  N SKG
Sbjct: 62  CRRNAYMYMDSKFRNLNLKKGEKILVQVTKEDYGRKGAKVIKIISLPGKYCVLS-NFSKG 120

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276
              S+KI +       K I   +++P+G+GV++RT   +     I ++   L  +++ ++
Sbjct: 121 MRFSQKIQDE---SFKKLILEKIKIPSGIGVMIRTDAQNVPAEFINKEIHKLNDIYNKIK 177

Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336
             A  ++ P L+++ G  +   +RD       +I V+ +  Y+  +DF+K  + +    +
Sbjct: 178 NKAQYALKPELMFDSGGALGEVLRDRLWDSNLKIYVNNDVDYKYIEDFLK-GVCNVNVHL 236

Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396
             Y     +     +E Q+ +L    + L   GY++IN+TEA+  IDVNSG++ R + ++
Sbjct: 237 ELYTGEKTLLSHYNMENQILNLRNNRIELNCGGYIVINKTEAMFVIDVNSGKNIRNNKMD 296

Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456
            T   TNL+AAEEIARQ+ L++L+G+I++DFIDME++ + + V  KLK      +++V +
Sbjct: 297 KTVFITNLQAAEEIARQIVLKNLSGIILIDFIDMEDEADKKKVMDKLKAGFLNSKSKVVI 356

Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516
              +   L++++R+R    + +   + C YC G G     S + + I   +         
Sbjct: 357 YPFTELNLVQIARKRQGKPIYDYIEEDCRYCDGTGKKIKLSYMMVLIRNEISNISCDRDV 416

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
            +  +         + N     I          I +    +++   + IE   
Sbjct: 417 KDFHIQIDVSYEKDVKNNMDRFIKGI-GAGDKRIYITYEKKVS---YKIEPLE 465



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++ ++ S     R+ +  ++ ++E   + E      G +Y+  V  V P+++ AF+D
Sbjct: 1  ME-EIFVERSAEGFLRIAIKENDILKECHIQEERGNAYPGEVYIGVVKNVVPAIKCAFID 59

Query: 61 YGGNRHGFLP 70
              R+ ++ 
Sbjct: 60 INCRRNAYMY 69


>gi|237741209|ref|ZP_04571690.1| ribonuclease G [Fusobacterium sp. 4_1_13]
 gi|229430741|gb|EEO40953.1| ribonuclease G [Fusobacterium sp. 4_1_13]
          Length = 458

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 203/450 (45%), Gaps = 8/450 (1%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      E   
Sbjct: 7   LSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+P  SK  +IS+
Sbjct: 67  FLSFENKKDISKYNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISK 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK     + +    G+ILRT    +++  +  ++   +   DN       
Sbjct: 126 KIKDIEEVNRLK----NIFLSTDNGLILRTNSEGKSEENLLEEYR-RLENIDNQINKDFE 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +   L+Y+  +++K+ +          II              ++      + +R+Y  
Sbjct: 181 KINVGLLYDVNSILKKVVALFDDSTEKFIIDDEHIFKEIKYLLEEIGKKDLIKKLRKYFK 240

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++T     ++   Q
Sbjct: 241 DEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQEIIFQ 300

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEA +EIARQ++LR+LAG+I++DFIDM++  N + + +K K+ L KD+  +     +N
Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKKRILEKFKKYLSKDKVEINSVEYTN 360

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++ +R+R    +     + C YC+G GY  S+  + L++L  +   +       I++
Sbjct: 361 LGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKDRIILNLLEDLNNQIKSQDIKKIVI 420

Query: 522 HTHSDVVLYLLNQ-KRATIVEYEARFGVSI 550
            T  D++  L        I   E      I
Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIEDNNFYKI 450



 Score = 87.7 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++ +L DN+++E+  E  +KK+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT---HGDVTIPNDHS 119
             ++ FL F E   D  +    D+  +  E+         +  D +      V +P   +
Sbjct: 62  LEKNAFLSF-ENKKDISKYNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLLPKSKN 120

Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173
           L     I +  +    ++I  + ++ +    + +G S E++ ++++R   I   
Sbjct: 121 LSISKKIKDIEEVNRLKNIFLSTDNGLILRTNSEGKSEENLLEEYRRLENIDNQ 174


>gi|296328079|ref|ZP_06870613.1| ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154855|gb|EFG95638.1| ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 458

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 115/450 (25%), Positives = 205/450 (45%), Gaps = 8/450 (1%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      +   
Sbjct: 7   LSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNSEIIFVDIGLDKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+P  SK  +IS+
Sbjct: 67  LLSFENKKNIPKFNIDDKLIVQTETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISK 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK     + +    G+IL+T    +++  +  +++  ++  +N       
Sbjct: 126 KIKDIEEVNRLK----NIFLGIDNGLILKTNSEGKSEESLLEEYKK-LKNIENRINRDFE 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +   L+Y+  +++K+A   L       II              +       + +R+Y  
Sbjct: 181 KINIGLLYDVNSILKKAESLLDDTIEEFIIDDKNIFEEIKVLLEETGKKDLIKKLRKYFK 240

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++T     ++   Q
Sbjct: 241 GEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEA +EIARQ++LR+LAG+I++DFIDM++  + + V ++ K+ L KDR  +     +N
Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIIDFIDMKKISDRKRVLEEFKKYLNKDRIEINSLEYTN 360

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++ +R+R    +     + C YC+G GY  S+  + L++L  +   +       I++
Sbjct: 361 LGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNAQIKSQDIKKIVI 420

Query: 522 HTHSDVVLYLLNQ-KRATIVEYEARFGVSI 550
            T  D++  L        I   E      I
Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIEDNNFYKI 450



 Score = 80.4 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 21/176 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++ +L DN+++E+  E  ++K+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNSEIIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
            +++  L F                      N        + D +     T P D    +
Sbjct: 62  LDKNALLSF---------------------ENKKNIPKFNIDDKLIVQTETEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           +    + + E       S N  +   ++D++  +             I +     +
Sbjct: 101 LTLDYSINGENLVLLPKSKNLSISKKIKDIEEVNRLKNIFLGIDNGLILKTNSEGK 156


>gi|289811332|ref|ZP_06541961.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 235

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 122/234 (52%)

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           E  L +R +RD     +  I V     Y    +F    +P     +  Y    PIF    
Sbjct: 2   ELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYD 61

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           +E ++    + +V L S GY+II+QTEA+ ++D+N+G       ++DT   TN+EA + I
Sbjct: 62  VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAI 121

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQLRLR+L G+I++DFIDM  + + R V   L+++L KDR +  +   S  GL+EM+R+
Sbjct: 122 ARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRK 181

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           R R SV       C  C G G +++  +V   I+R +      Y +   +V+  
Sbjct: 182 RTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYAS 235


>gi|153810887|ref|ZP_01963555.1| hypothetical protein RUMOBE_01271 [Ruminococcus obeum ATCC 29174]
 gi|149833283|gb|EDM88365.1| hypothetical protein RUMOBE_01271 [Ruminococcus obeum ATCC 29174]
          Length = 396

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 159/310 (51%), Gaps = 1/310 (0%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
           + ++    LLVQI +E    K  A+T  L+ +G+Y VL     K    ++         N
Sbjct: 81  QPLRPGDQLLVQINREAMKGKLPALTANLNFSGKYLVLTTGNRKIGFSNKLSKEESSLLN 140

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
                         G+I RT  A  +K E   + E L + ++ V     N     L+YE 
Sbjct: 141 KWLEEERSLPEREYGIIARTNAAEASKEEFFHELEMLKKQYEKVAVHGRNRTCYSLLYEA 200

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSG 350
                 A+RD+Y +D+ EI+    + + +   ++    P    I++ Y+D     +    
Sbjct: 201 EPFYLAAVRDVYTRDLDEIVTDIPEIHEKIFAYLSEFQPDKLEILKLYQDKLLPLYKLYS 260

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           +E  +D +   ++ L S G+++I QTEA VSIDVNSG+ T +   E+T  + NLEAA EI
Sbjct: 261 LEGAIDEVCHEKIWLKSGGFLVIQQTEAFVSIDVNSGKYTGKKKAEETYRKINLEAAAEI 320

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQ+RLR+L+G+I+VDFI+ME   +   +   L++ L+KD  + +   I+   +LEM+RQ
Sbjct: 321 ARQIRLRNLSGIILVDFINMENPDHQDELFHVLQKYLRKDPVKCKAIDITPLHILEMTRQ 380

Query: 471 RIRSSVLEST 480
           ++R  ++E  
Sbjct: 381 KVRRPLIEDL 390



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML++      T   +++D +V EL  E   KK    NIY+ +V  +  ++QAAFV    +
Sbjct: 1  MLLNEVPC--TVCAIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDS 58

Query: 65 RHGFLPFL 72
           +G+LP  
Sbjct: 59 VNGYLPLN 66


>gi|51209866|ref|YP_063530.1| ribonuclease E [Gracilaria tenuistipitata var. liui]
 gi|50657620|gb|AAT79605.1| ribonuclease E [Gracilaria tenuistipitata var. liui]
          Length = 497

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 163/320 (50%), Gaps = 5/320 (1%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I++V+   QI+LVQ+ KE    KG  +T  + L G+Y VLMP  S      +   +    
Sbjct: 82  IEKVLSINQIILVQVTKEPTIYKGPRLTANIHLHGKYLVLMPFCSTICISHKIYDHNERT 141

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
                    L  P  MG++++++     +  I +D + L + W  + +  +   +P L+Y
Sbjct: 142 --YLYSLGVLLKPGKMGLLIKSSAQGVKEKIILKDLDDLKKQWGFIEKAIIEYSSPLLLY 199

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP---SYARIVRQYEDPHPIF 346
           ++ +LIKR IRD Y   +++II+  ++G  +   ++            I++ Y     I 
Sbjct: 200 KDEDLIKRIIRDFYEDSVTKIIIDSKEGLNQLNYYLYKWNCISNRIKTILQLYNHQKCIL 259

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               I+  +++  + +V LP  G++II   EAL  IDVNSG   +    ++  L+TN  A
Sbjct: 260 DEFYIKHAINNALKPKVKLPYGGHIIIESNEALTVIDVNSGSFNKSGNSKEAILKTNFYA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A EIA QL++R++ G+I++DFIDM  + +   + +   + LK D A+ Q+  +S  GL+E
Sbjct: 320 AIEIAHQLKIRNINGVIIIDFIDMSSQGDQLQLLEHFSKLLKLDSAKPQIVQLSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVCTY 486
           ++R+R   S+ E        
Sbjct: 380 LTRRRRGQSLQELFIHENNC 399



 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 24 RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEI 74
          +++E+   + +      +IY+  V ++  S+ AAF+      + GF+   +I
Sbjct: 21 KIQEII--TINNPYQVNDIYIGTVEKIFTSINAAFIKLNKSGKSGFIHINDI 70


>gi|256027060|ref|ZP_05440894.1| ribonuclease G [Fusobacterium sp. D11]
 gi|289765044|ref|ZP_06524422.1| ribonuclease G [Fusobacterium sp. D11]
 gi|289716599|gb|EFD80611.1| ribonuclease G [Fusobacterium sp. D11]
          Length = 458

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 211/454 (46%), Gaps = 16/454 (3%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      E   
Sbjct: 7   LSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+P  SK  +ISR
Sbjct: 67  LLSFENKKNIPKFNIDDKLIVQTESEPRDEKGAKLTLDYSINGENLVLLP-KSKNISISR 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK I   +      G+ILRT    +++  +  ++  L  + + + +   N
Sbjct: 126 KIKDIEEINRLKNIFLSI----DNGLILRTNSEEKSEESLLEEYRKLEDIDNQINKDFEN 181

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYE 340
                L   + N I +    L+   I E I+  E  + E K F++        + +R+Y 
Sbjct: 182 INIGLLY--DVNSILKKAVTLFDDMIEEFIIDDEHIFEEIKIFLEETGKKDLIKKLRKYF 239

Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
               IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++      ++   
Sbjct: 240 KDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNIGNKTSQELIF 299

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           QTNLEA +EIARQ++LR+LAG+I+VDFIDM++  + + V ++ K+ L +D+A +     +
Sbjct: 300 QTNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRVLEEFKKYLSEDKAEINSVEYT 359

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
           N GL++ +R+R    +     + C YC+G GY  S+  + L++L  +   +       I+
Sbjct: 360 NLGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKIV 419

Query: 521 VHTHSDVV----LYLLNQKRATIVEYEARFGVSI 550
           +    D++     Y+ N K   I   E      I
Sbjct: 420 IRAKKDIIKELNKYINNNK---IEYIEDNNFYKI 450



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++ +L DN+++E+  E  ++K+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++  L F                      N        + D +     + P D    +
Sbjct: 62  LEKNALLSF---------------------ENKKNIPKFNIDDKLIVQTESEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           +    + + E       S N  +   ++D++  +             I
Sbjct: 101 LTLDYSINGENLVLLPKSKNISISRKIKDIEEINRLKNIFLSIDNGLI 148


>gi|302875581|ref|YP_003844214.1| ribonuclease, Rne/Rng family [Clostridium cellulovorans 743B]
 gi|307690110|ref|ZP_07632556.1| ribonuclease [Clostridium cellulovorans 743B]
 gi|302578438|gb|ADL52450.1| ribonuclease, Rne/Rng family [Clostridium cellulovorans 743B]
          Length = 475

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/413 (28%), Positives = 195/413 (47%), Gaps = 20/413 (4%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
                  +K     LV++++E    K A VT+ +++ G Y V+ P   K   ISRKI+N 
Sbjct: 68  HLDNNRDLKKGDYFLVEVLREATELKSANVTSLITIPGTYVVVNP-MEKALKISRKISNS 126

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                +KE  + +      G+ +R++  +     I+ + + L  + D +      S+ P 
Sbjct: 127 KFINEVKEQLKDVST---YGITVRSSAENVDINIIREEVQALNIVVDKIIAKGKYSLKPQ 183

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
           L+Y++G  + R +RD        IIV   K Y   K+ ++ L  S    +  +E+   IF
Sbjct: 184 LIYDDGGALGRILRDYINDGTKRIIVDDIKNYDLVKENIEKLHSSAE--LIMHEESRGIF 241

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE ++ +L   +V L S GY+II +TEAL SIDVNSG+ST E  I  TA +TNLEA
Sbjct: 242 DCYSIEKEILALRHKKVVLKSGGYIIIEKTEALYSIDVNSGKSTGEVAISKTAFKTNLEA 301

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEIARQ+ LR+L+G+IV+DFI+M++KK    V K L+ + KKD  +  +   ++  L++
Sbjct: 302 AEEIARQIILRNLSGIIVIDFINMKDKKEKTEVIKILEAAFKKDNNKTTIYPFTDVNLVQ 361

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           ++R++    +     + C +C G G       + L I   + +   Q+     ++   S 
Sbjct: 362 ITRKKRGKDIGSFLEESCKHCGGEGARLKWDYLKLLIKNQLIKLKGQHITKEFVITIDSK 421

Query: 527 VVLYLLNQKRATIVEYE--------------ARFGVSINVVIGIELADKLFYI 565
               +  +    I   E                + V   +        + + I
Sbjct: 422 YKSEVQKKLTEFITFIEGHDCLLYLLYLDNFNSYKVEPVIFDSQRKNLQEYKI 474



 Score = 65.0 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
          N++ I+       R+ +    ++     E E ++ + G IYL  V  + P+++ AF+D G
Sbjct: 2  NEIFIEKDKPY-LRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDIG 60

Query: 63 GNRHGFLPF 71
            +  F+  
Sbjct: 61 KAKDAFMHL 69


>gi|255527003|ref|ZP_05393895.1| ribonuclease [Clostridium carboxidivorans P7]
 gi|255509313|gb|EET85661.1| ribonuclease [Clostridium carboxidivorans P7]
          Length = 386

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 174/346 (50%), Gaps = 6/346 (1%)

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
            GNKGA VT  +S+ G+Y VLM    +     +      D    + +A  L+ P  +G++
Sbjct: 1   MGNKGAKVTNVISIPGKYCVLMTMNKEVTFSRKI----QDGLLKQSMAEQLKKPNDVGIM 56

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +RT GA+ +  +I ++   L  +++N+   A       L+++ G ++ R +RD    +  
Sbjct: 57  IRTEGANASIDDINKEISKLYSIYNNINNEAKYFNKFGLLFDNGGILGRVLRDRLNNNCK 116

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
             + +  +   +  +            V+ Y+D   +F   GIE ++ SL    V L   
Sbjct: 117 --VYANTEEDVQYINEFLADSLYGKVSVKLYDDNRTLFDYYGIEREILSLRNNRVYLKCG 174

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
           GY++I++TEA+  IDVNSG++ +   IE TA  TN +AAEEIARQ+ LR+L+G+IV+DFI
Sbjct: 175 GYIVIDRTEAMYVIDVNSGKNVKSSSIEKTAYITNYQAAEEIARQIELRNLSGIIVIDFI 234

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488
           DM+ ++N   + +KL+E  + D+ +  +   +   L++++R+R   S+ +   + C  C 
Sbjct: 235 DMDNEQNREKIMQKLQEGFRDDKNKTVIYPFTELNLVQIARRRSGKSIYDYLEENCELCG 294

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           G G     S V + I   + +   Q    +I +         +   
Sbjct: 295 GKGKKLRFSYVCMLIKNEIFKIDEQRDIKDIHIEIDEIYADNIKGD 340


>gi|28211681|ref|NP_782625.1| ribonuclease G [Clostridium tetani E88]
 gi|28204123|gb|AAO36562.1| ribonuclease G [Clostridium tetani E88]
          Length = 477

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 105/442 (23%), Positives = 198/442 (44%), Gaps = 5/442 (1%)

Query: 98  TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157
            +      D         N+   E       F     E       N V            
Sbjct: 2   KEIFIERQDSVFRIAIKKNNELKECYIEEDTFEPLPGEIYRGIVKNIVPGIKCAFIDIGY 61

Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217
           +     +  +      IK  + ++VQ++KE    KGA VT  +S+ GRY VL    ++ +
Sbjct: 62  KSNCYMYLDRKFRNLDIKKGEEIMVQVLKEPIDKKGAKVTNAVSIPGRYCVLNTLDNELK 121

Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277
              +   N      +K +   +  P  +G+++RT     +   +K +   L   +  V+ 
Sbjct: 122 FSKKINNND----FIKYVQSNINKPKDIGIMIRTKSEEVSIETLKDEINSLYERYLEVKN 177

Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337
               S    L+ +   ++ + +RD      ++I ++  K Y+  K +++ L       + 
Sbjct: 178 KMYYSPKVGLLMKGSGILGKILRDKLEDKNTKIYINNGKDYKYIKKYIEDLEDVNVE-LI 236

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
            +E+   +    GIE ++  L  ++V+L   G+++I +TEA+  ID+NSG++T+   I+D
Sbjct: 237 LHEEKRELLDYYGIEREILKLRNSKVSLKCGGHIVIEKTEAMYVIDINSGKNTKSTSIKD 296

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
           TA  TN +AA EIA Q++LR+L+G+IVVDFIDM+++     V   L+E   +D+++V V 
Sbjct: 297 TAFITNKQAAIEIANQIKLRNLSGIIVVDFIDMKDEDKKEEVINLLREGFSEDKSKVVVY 356

Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517
             +   L++++R+R+   + E   + C  C G G     S V   I   +++       +
Sbjct: 357 PFTELNLVQITRRRMGKVLYEYIDEPCKICNGKGRRIKMSYVEFLIKNEIQKDRAMNHIY 416

Query: 518 NIIVHTHSDVVLYLLNQKRATI 539
             +   + ++V   L+Q    I
Sbjct: 417 IELNEMYEEIVEENLSQFIYEI 438



 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 84/272 (30%), Gaps = 18/272 (6%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++ I+       R+ + ++N ++E   E +  + + G IY   V  + P ++ AF+D G
Sbjct: 2   KEIFIER-QDSVFRIAIKKNNELKECYIEEDTFEPLPGEIYRGIVKNIVPGIKCAFIDIG 60

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQ----ALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118
              + ++               DR+     + K   I     +   D          +  
Sbjct: 61  YKSNCYMYL-------------DRKFRNLDIKKGEEIMVQVLKEPIDKKGAKVTNAVSIP 107

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
               V    +   +  ++   +     V +  +        +  K +         +   
Sbjct: 108 GRYCVLNTLDNELKFSKKINNNDFIKYVQSNINKPKDIGIMIRTKSEEVSIETLKDEINS 167

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
           +    +  + +      V   +  +G    ++ +  + +     I N  D K +K+    
Sbjct: 168 LYERYLEVKNKMYYSPKVGLLMKGSGILGKILRDKLEDKNTKIYINNGKDYKYIKKYIED 227

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           LE      ++            I+R+   L  
Sbjct: 228 LEDVNVELILHEEKRELLDYYGIEREILKLRN 259


>gi|323486887|ref|ZP_08092203.1| cytoplasmic axial filament protein [Clostridium symbiosum
           WAL-14163]
 gi|323399750|gb|EGA92132.1| cytoplasmic axial filament protein [Clostridium symbiosum
           WAL-14163]
          Length = 395

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 3/309 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN--PVDRKNL 232
           K    ++VQ+ ++    K   +++ L+  G+YSV+    ++    ++        + K  
Sbjct: 76  KQGDEIIVQVSRDAVKTKDPVLSSNLNFTGKYSVVTLGKTQIGFSAKITDPVWKEEVKEY 135

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
               +      G GVI+RT     TK  I  +   L +  D +   A N     L+    
Sbjct: 136 LLALKEETGRNGFGVIVRTNAKETTKEVIGGEVLALKQRMDELLAKAENRTCFTLLEGAE 195

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGI 351
                ++RD Y   +  +I   +  Y E + ++ K       ++    +   P+     +
Sbjct: 196 PSFILSLRDTYAGSLQSVITDDKICYEEMRRYLDKNQKADLEKLQFYQDPLLPLIKLYKL 255

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E  L+   +  V L S GY++I  TEAL  +DVN+G+ + +   EDT L+ NLEAA E A
Sbjct: 256 EAALEEALERRVWLKSGGYLVIEPTEALTVVDVNTGKYSGKKNAEDTILKINLEAAAETA 315

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQL LR+L+G+I+VDFIDM  +++ + +   L+E LKKD  +  +  ++  GL+E++R++
Sbjct: 316 RQLCLRNLSGIIIVDFIDMAREEHKQQLLTALEEELKKDPVKTVLVDMTKLGLVEITRKK 375

Query: 472 IRSSVLEST 480
           +R  + E  
Sbjct: 376 VRKPLHEVY 384



 Score = 60.8 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 28 LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          L  E E    + GNIY+ KV  +  ++ AAF+D GG + G+    E
Sbjct: 9  LSLEPEESGCLLGNIYIGKVKNIVKNINAAFIDLGGGKTGYYSLSE 54


>gi|34762570|ref|ZP_00143566.1| Ribonuclease G [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887791|gb|EAA24864.1| Ribonuclease G [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 432

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 182/374 (48%), Gaps = 7/374 (1%)

Query: 178 QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIAR 237
             L+VQ   E R  KGA +T   S+ G   VL+P  SK  +IS+KI +  +   LK    
Sbjct: 57  DKLIVQAETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISKKIKDIEEINRLK---- 111

Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
            + +    G+ILRT    +++  +  ++   +   DN        ++  L+Y+  +++K+
Sbjct: 112 NIFLNVNNGLILRTNSKGKSEENLLEEYR-RLENIDNQINKDFEKISVGLLYDVNSILKK 170

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357
            +          II              ++      + +R+Y     IF    I  Q++ 
Sbjct: 171 VVALFDDSIEKFIIDDEHIFKEIKYLLEEIGKKDLIKKLRKYFKDEDIFEYYNINSQIER 230

Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417
               +V L S  Y+II +TEAL+SIDVN+G++T     ++   QTNLEA +EIARQ++LR
Sbjct: 231 ALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQTNLEATKEIARQIKLR 290

Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477
           +LAG+I++DFIDM++  N + + ++ K+ L KD+  +     +N GL++ +R+R    + 
Sbjct: 291 NLAGIIIIDFIDMKKFSNKKRILERFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELA 350

Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-KR 536
               + C YC+G GY  S+  + L++L  +   +       I++ T  D++  L      
Sbjct: 351 LYYREKCQYCEGIGYFLSKDRIILNLLEDLNNQIKSQDIKKIVIRTKKDIIKELNKYIDN 410

Query: 537 ATIVEYEARFGVSI 550
             I   E      I
Sbjct: 411 NKIEYIEDNNFYKI 424



 Score = 53.8 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 29  DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88
             E  ++++I GNIY   V  +  + +  FVD G  ++  L F E   D  +    D+  
Sbjct: 2   YIERNNQQEISGNIYKGMVVDILNNGEIIFVDIGLEKNALLSF-ENKKDIPKYNIDDKLI 60

Query: 89  LLKESNIAQTDSEAVADDVT---HGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           +  E+         +  D +      V +P   +L     I +  +    ++I    N+ 
Sbjct: 61  VQAETEPRDEKGAKLTLDYSINGENLVLLPKSKNLSISKKIKDIEEINRLKNIFLNVNNG 120

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEV 173
           +    + KG S E++ ++++R   I   
Sbjct: 121 LILRTNSKGKSEENLLEEYRRLENIDNQ 148


>gi|323691929|ref|ZP_08106180.1| ribonuclease G [Clostridium symbiosum WAL-14673]
 gi|323504014|gb|EGB19825.1| ribonuclease G [Clostridium symbiosum WAL-14673]
          Length = 395

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 3/309 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN--PVDRKNL 232
           K    ++VQ+ ++    K   +++ L+  G+YSV+    ++    ++        + K  
Sbjct: 76  KQGDEIIVQVSRDAVKTKDPVLSSNLNFTGKYSVVTLGKTQIGFSAKITDPVWKEEVKEY 135

Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
               +      G GVI+RT     TK  I  +   L +  D +   A N     L+    
Sbjct: 136 LLALKEETGRNGFGVIVRTNAKETTKEVIGGEVLALKQRMDELLAKAENRTCFTLLEGAE 195

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGI 351
                ++RD Y   +  +I   +  Y E + ++ K       ++    +   P+     +
Sbjct: 196 PSFILSLRDTYAGSLQSVITDDKICYEEMRRYLDKNQKADLEKLQFYQDPLLPLIKLYKL 255

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E  L+   +  V L S GY++I  TEAL  +DVN+G+ + +   EDT L+ NLEAA E A
Sbjct: 256 EAALEEALERRVWLKSGGYLVIEPTEALTVVDVNTGKYSGKKNAEDTILKINLEAAAETA 315

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQL LR+L+G+I+VDFIDM  +++ + +   L+E LKKD  +  +  ++  GL+E++R++
Sbjct: 316 RQLCLRNLSGIIIVDFIDMAREEHKQQLLTALEEELKKDPVKTVLVDMTKLGLVEITRKK 375

Query: 472 IRSSVLEST 480
           +R  + E  
Sbjct: 376 VRKPLHEVY 384



 Score = 61.9 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 28 LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          L  E E    + GNIY+ KV  +  ++ AAF+D GG + G+    E
Sbjct: 9  LSLEPEESGSLLGNIYIGKVKNIVKNINAAFIDLGGGKTGYYSLSE 54


>gi|168215758|ref|ZP_02641383.1| ribonuclease, Rne/Rng family [Clostridium perfringens NCTC 8239]
 gi|182382146|gb|EDT79625.1| ribonuclease, Rne/Rng family [Clostridium perfringens NCTC 8239]
          Length = 480

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 7/368 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    ++V+++KE+ G+KGA VT+ +SLAGRY VL  +     +ISRKI N   +K L++
Sbjct: 77  KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLEFKKELEK 135

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
               L  P+ +GV +RT   S +  EI+ + E L R +  V      S+ P  +  +G+L
Sbjct: 136 ---SLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I + IRD      S IIV   + Y   KD +     S    V  Y+D   +F   GIE +
Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + SL    V L   G ++I +TEA+  IDVNSG++T     E TA +TN  AA EIARQ+
Sbjct: 250 ILSLRNKRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           ++R+L G+I+VDFIDM  ++N + + + LK+  K D  R ++   +  GL++++R R   
Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILEILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ E   + C  C G G     S + L +   + +   +    +  +  +S     +   
Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429

Query: 535 KRATIVEY 542
               + E 
Sbjct: 430 IFEFLKEI 437



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           RV + ++N + E   E E  + ++G IY   V RV P +++AF+D G ++          
Sbjct: 14  RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65

Query: 76  PDYYQIPFSDRQALLKESNIAQTDSEA 102
              Y I   D + L +   I     + 
Sbjct: 66  ---YMILGEDEKDLKQGDGIIVEVLKE 89


>gi|254302543|ref|ZP_04969901.1| ribonuclease G [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322735|gb|EDK87985.1| ribonuclease G [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 458

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 198/437 (45%), Gaps = 14/437 (3%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR---- 177
           E   +     E   +  I+ N      V+ +  G    +    ++   +    K      
Sbjct: 20  EDNKLDEMYIERNNQKEITGNIYKGKVVDILNSGEIIFLDIGLEKNALLSFENKKDIPKL 79

Query: 178 ---QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
                L+V+I  E R  KGA ++   S+ G   VL+P  SK  +IS+KI +  +   LK 
Sbjct: 80  NIDDKLIVEIETEPRDEKGAKLSLDYSINGENLVLLP-KSKNLSISKKIKDIEEVNRLK- 137

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
               + +    G+ILRT    +TK  +  +++  ++  +         +   L+Y+  ++
Sbjct: 138 ---NIFLNIDNGLILRTNSEGKTKESLLEEYKD-LKNIETQINKEFEKINIGLLYDVNSI 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           +K+A+          II              ++      + +R+Y     IF    I  Q
Sbjct: 194 LKKAVTLFDDSIEEFIIDDKNIFEEIKVLLEEIGKKDLIKKLRKYFKDEEIFEYYNINSQ 253

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++     +V L S  Y++I +TEAL+SIDVN+G++      ++   QTNLEA +EIARQ+
Sbjct: 254 IERALDRKVYLDSGAYIVIEKTEALISIDVNTGQNIGNKTSQELIFQTNLEATKEIARQI 313

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           +LR+LAG+I+VDFIDM++  + + + ++ K  L +DR  +     +N GL++ +R+R   
Sbjct: 314 KLRNLAGIIIVDFIDMKKISDRKRILEEFKRYLSEDRVEINSLEYTNLGLIQFTRKRQGK 373

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
            +     + C YC+G GY  S+  + L++L  +   +       I+V T  DV+  L   
Sbjct: 374 ELALYYREKCQYCEGTGYFFSKDRIILNLLEDLNSQIKSQDIKKILVKTKKDVIKELNKY 433

Query: 535 -KRATIVEYEARFGVSI 550
                I   E      I
Sbjct: 434 IDNNKIEYIEDNNFYKI 450



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 21/176 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +    E ++ +L DN+++E+  E  ++K+I GNIY  KV  +  S +  F+D G
Sbjct: 2   KKYLILSKSSYEIKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNSGEIIFLDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++  L F                      N        + D +     T P D    +
Sbjct: 62  LEKNALLSF---------------------ENKKDIPKLNIDDKLIVEIETEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           ++   + + E       S N  +   ++D++  +             I       +
Sbjct: 101 LSLDYSINGENLVLLPKSKNLSISKKIKDIEEVNRLKNIFLNIDNGLILRTNSEGK 156


>gi|182419806|ref|ZP_02951046.1| ribonuclease, Rne/Rng family [Clostridium butyricum 5521]
 gi|237666416|ref|ZP_04526401.1| ribonuclease, Rne/Rng family [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376354|gb|EDT73936.1| ribonuclease, Rne/Rng family [Clostridium butyricum 5521]
 gi|237657615|gb|EEP55170.1| ribonuclease, Rne/Rng family [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 482

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 112/427 (26%), Positives = 205/427 (48%), Gaps = 7/427 (1%)

Query: 116 NDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIK 175
           N+  +E +    N      E       N + +                +         IK
Sbjct: 20  NNELVESIVEEQNDEPIIGEIYKAKVKNILPAINSIFIDMGLSKEGYMYYGNDLKAANIK 79

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               +LV++VKE   +KGA ++  +S+ G+Y VL    ++G + S++IT+ +     KEI
Sbjct: 80  KGDDILVEVVKEPINDKGAKLSHKVSIPGKYVVLNC-YNQGISFSKRITDEIR---KKEI 135

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
              ++    + + +RT G +     ++++ + L   ++N++     S     +Y E   +
Sbjct: 136 LDNIKPLDDVSITIRTEGINTDINILQKEIDKLYGEFENIKRKMKYSNELKKLYGEDPTL 195

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            R +R+ Y  + ++I V  +  + +    +K +       V +Y     +F   GIE +L
Sbjct: 196 NRLLRNSYNDENTKIYVDNDSDFEKI---LKFIGEEKELQVEKYNGYRNLFDCYGIEKEL 252

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
             L   +V L   GY++I++TEA+  IDVNSG++ +E     T L+TNLEAA+EI +Q+R
Sbjct: 253 IKLRHNKVNLHCGGYIVIDKTEAMYVIDVNSGKNIKERNFNKTILETNLEAAKEIGKQIR 312

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+L+G+IVVDFIDM ++K    V  +L  SLK+D+  V++   +   L++++R+R   S
Sbjct: 313 LRNLSGIIVVDFIDMRDRKQKEIVMSELYSSLKEDKGNVKIFPFTELDLVQIARRRQGKS 372

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
           + E   + C+ CKG G I   S +   I   +     + +  +  +   S     + +  
Sbjct: 373 IYEYMEEECSRCKGRGIILKLSYIEGLIRNEIIRMKEENSIDSFKIEIDSVYKDRIKDDI 432

Query: 536 RATIVEY 542
            + I E 
Sbjct: 433 FSFIKEI 439



 Score = 60.8 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+       R+ V  +N + E   E ++ + I G IY AKV  + P++ + F+D G
Sbjct: 2  KEIFIERRE-NILRIAVKVNNELVESIVEEQNDEPIIGEIYKAKVKNILPAINSIFIDMG 60

Query: 63 GNRHGFLPF 71
           ++ G++ +
Sbjct: 61 LSKEGYMYY 69


>gi|168212832|ref|ZP_02638457.1| ribonuclease, Rne/Rng family [Clostridium perfringens CPE str.
           F4969]
 gi|170715543|gb|EDT27725.1| ribonuclease, Rne/Rng family [Clostridium perfringens CPE str.
           F4969]
          Length = 480

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    ++V+++KE+ G+KGA VT+ +SLAGRY VL  +     +ISRKI N       KE
Sbjct: 77  KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +   L  P+ +GV +RT   S +  EI+ + E L R +  V      S+ P  +  +G+L
Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I + IRD      S IIV   + Y   KD +     S    V  Y+D   +F   GIE +
Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + SL    V L   G ++I +TEA+  IDVNSG++T     E TA +TN  AA EIARQ+
Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           ++R+L G+I+VDFIDM  ++N + + + LK+  K D  R ++   +  GL++++R R   
Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILEILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ E   + C  C G G     S + L +   + +   +    +  +  +S     +   
Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429

Query: 535 KRATIVEY 542
               + E 
Sbjct: 430 IFEFLKEI 437



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           RV + ++N + E   E E  + ++G IY   V RV P +++AF+D G ++          
Sbjct: 14  RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65

Query: 76  PDYYQIPFSDRQALLKESNIAQTDSEA 102
              Y I   D + L +   I     + 
Sbjct: 66  ---YMILGEDEKDLKQGDGIIVEVLKE 89


>gi|110798631|ref|YP_696809.1| ribonuclease [Clostridium perfringens ATCC 13124]
 gi|168208833|ref|ZP_02634458.1| ribonuclease, Rne/Rng family [Clostridium perfringens B str. ATCC
           3626]
 gi|182623993|ref|ZP_02951781.1| ribonuclease, Rne/Rng family [Clostridium perfringens D str.
           JGS1721]
 gi|110673278|gb|ABG82265.1| ribonuclease, Rne/Rng family [Clostridium perfringens ATCC 13124]
 gi|170713200|gb|EDT25382.1| ribonuclease, Rne/Rng family [Clostridium perfringens B str. ATCC
           3626]
 gi|177910886|gb|EDT73240.1| ribonuclease, Rne/Rng family [Clostridium perfringens D str.
           JGS1721]
          Length = 480

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    ++V+++KE+ G+KGA VT+ +SLAGRY VL  +     +ISRKI +       KE
Sbjct: 77  KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIEDLE---FKKE 132

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +   L  P+ +GV +RT   S +  EI+ + E L R +  V      S+ P  +  +G+L
Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I + IRD      S IIV   + Y   KD +     S    V  Y+D   +F   GIE +
Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + SL    V L   G ++I +TEA+  IDVNSG++T     E TA +TN  AA EIARQ+
Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           ++R+L G+I+VDFIDM  ++N + + + LK+  K D  R ++   +  GL++++R R   
Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILEILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ E   + C  C G G     S + L +   + +   +    +  +  +S     +   
Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429

Query: 535 KRATIVEY 542
               + E 
Sbjct: 430 IFEFLKEI 437



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           RV + ++N + E   E E  + ++G IY   V RV P +++AF+D G ++  ++   E  
Sbjct: 14  RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQAYMILGEEE 73

Query: 76  PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEE 135
            D  Q      + L ++         +         V   + + +     I +   + E 
Sbjct: 74  KDLKQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSRNDISISRKIEDLEFKKEL 133

Query: 136 ESIISANND 144
           E+ +   ++
Sbjct: 134 ENSLIKPSE 142


>gi|237743504|ref|ZP_04573985.1| ribonuclease G [Fusobacterium sp. 7_1]
 gi|229433283|gb|EEO43495.1| ribonuclease G [Fusobacterium sp. 7_1]
          Length = 458

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 204/453 (45%), Gaps = 14/453 (3%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      E   
Sbjct: 7   LSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+P  SK  +ISR
Sbjct: 67  LLSFENKKKVPKFNIDDKLIVQTESEPRDEKGAKLTLDYSINGENLVLLP-KSKNISISR 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK I   +      G+ILRT    +++  +  ++   +   DN       
Sbjct: 126 KIKDIEEINRLKNIFLSI----DNGLILRTNSEEKSEESLLEEYRK-LEDIDNQINKDFE 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +   L+Y+  +++K+A+          II              K       + +R+Y  
Sbjct: 181 KINIGLLYDVNSILKKAVTLFDDTIEEFIIDDEHIFEEIKILLEKTGKKDLIKKLRKYFK 240

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++      ++   Q
Sbjct: 241 DEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNIGNKTSQELIFQ 300

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEA +EIARQ++LR+LAG+I+VDFIDM++  + + V ++ K+ L +D+A       +N
Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRVLEEFKKYLSEDKAEKNSVEYTN 360

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++ +R+R    +     + C YC+G GY  S+  + L++L  +   +       I++
Sbjct: 361 LGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKIVI 420

Query: 522 HTHSDVV----LYLLNQKRATIVEYEARFGVSI 550
               D++     Y+ N K   I   E      I
Sbjct: 421 RAKKDIIKELNKYINNNK---IKYIEDNNFYKI 450



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++ +L DN+++E+  E  ++K+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++  L F                      N  +     + D +     + P D    +
Sbjct: 62  LEKNALLSF---------------------ENKKKVPKFNIDDKLIVQTESEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           +    + + E       S N  +   ++D++  +             I
Sbjct: 101 LTLDYSINGENLVLLPKSKNISISRKIKDIEEINRLKNIFLSIDNGLI 148


>gi|256846345|ref|ZP_05551802.1| ribonuclease G [Fusobacterium sp. 3_1_36A2]
 gi|256718114|gb|EEU31670.1| ribonuclease G [Fusobacterium sp. 3_1_36A2]
          Length = 458

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 116/444 (26%), Positives = 205/444 (46%), Gaps = 11/444 (2%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      E   
Sbjct: 7   LSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+   SK  +IS+
Sbjct: 67  FLSFENKKNIPKFNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLL-LKSKNLSISK 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK I   +      G+ILRT    +++  +  ++   +   +N       
Sbjct: 126 KIKDIEEVNRLKNIFLSI----DNGLILRTNSKGKSEESLLEEYRK-LEDINNQINKDFE 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +   ++Y+  ++ K+A+  L       II              ++      + +R+Y  
Sbjct: 181 KINIGVLYDVNSISKKAVILLDDTVEEFIIDDKNIFEEIKVLLEEIGKKDLIKKLRKYFK 240

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++T     ++   Q
Sbjct: 241 DEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEA +EIARQ++LR+LAG+I+VDFIDM++  + + + ++ K+ L +DR  +     +N
Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRILEEFKKYLNEDRTEINSVEYTN 360

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521
            GL++ +R+R    +     + C YC+G GY  S+  V L++L  +   +       I++
Sbjct: 361 LGLIQFTRKRQGKELAFYYREKCLYCEGTGYFLSKDRVILNLLEDLNSQIKSQDIKKIVI 420

Query: 522 HTHSDVV----LYLLNQKRATIVE 541
            T  D++     Y+ N K   I +
Sbjct: 421 RTKKDIIKELNKYINNNKIECIED 444



 Score = 85.0 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 21/176 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++ +L DN+++E+  E  +KK+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++ FL F                      N        + D +     T P D    +
Sbjct: 62  LEKNAFLSF---------------------ENKKNIPKFNIDDKLIVQAETEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           +    + + E     + S N  +   ++D++  +             I       +
Sbjct: 101 LTLDYSINGENLVLLLKSKNLSISKKIKDIEEVNRLKNIFLSIDNGLILRTNSKGK 156


>gi|308070394|ref|YP_003871999.1| ribonuclease [Paenibacillus polymyxa E681]
 gi|305859673|gb|ADM71461.1| Ribonuclease [Paenibacillus polymyxa E681]
          Length = 394

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 173/309 (55%), Gaps = 2/309 (0%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           +  I EV+K  Q ++VQ++KE  G+KGA VTT+ SL GR+ V MP         +     
Sbjct: 84  KPSISEVLKVGQEIVVQVLKEAVGSKGARVTTHFSLPGRWIVYMPRADYVAVSKKIEREG 143

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
              +   +        +  G+I+RT     +   I+ D   L + W  ++  A    AP 
Sbjct: 144 ERIR--LKAMGEQLRTSEEGLIIRTVSEDMSIEAIENDLNQLRKQWATIQRKAGEHSAPC 201

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
            ++ + ++++R IRD++  +  E+++  E+  ++A+  ++ + P+ A +         IF
Sbjct: 202 ELHRDLSIVQRLIRDVFTPEQDELVIDSEEQAKDAEIMLQQIGPAKAHVSIFRGAEETIF 261

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              GI  QL+     +V L   GY++I+ TEAL  IDVN+G+ T    +E+T  QTN+EA
Sbjct: 262 KAYGIHEQLERDFARKVWLQGGGYIVIDHTEALTVIDVNTGKFTGGSNLEETVTQTNIEA 321

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEIAR +R+RD+ G+I++DFIDME+++N R V   L+  LKKDR +  V   +  GLLE
Sbjct: 322 AEEIARLVRVRDIGGIIIIDFIDMEQEENRREVSSVLEARLKKDRTKSYVVGWTRLGLLE 381

Query: 467 MSRQRIRSS 475
           M+R+++R  
Sbjct: 382 MTRKKVREE 390



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          K +I     + T++ +L + R+ E   E   K+ I G+ + A+V  V P +QAAFVD G 
Sbjct: 2  KQMIVQCQQQMTQMALLEEGRLVEYAAELPRKRGILGSFFKARVVNVLPGMQAAFVDIGQ 61

Query: 64 NRHGFLPFLEI 74
           ++ FL   ++
Sbjct: 62 RKNAFLYVDDV 72


>gi|304407519|ref|ZP_07389171.1| ribonuclease, Rne/Rng family [Paenibacillus curdlanolyticus YK9]
 gi|304343470|gb|EFM09312.1| ribonuclease, Rne/Rng family [Paenibacillus curdlanolyticus YK9]
          Length = 413

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 4/320 (1%)

Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220
             + K +  I++V++  Q L VQ+++E  G KGA VT ++SL GR+ V MP+        
Sbjct: 90  KNQNKEKPSIRDVLRIGQELTVQVIREASGVKGARVTMHVSLPGRWLVYMPSAGYVGVSR 149

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           +   +   ++    +       A  GVILRTA A      +  D   L   W  +  LA 
Sbjct: 150 KI--DDEKKRERLRLFGERMRLAEEGVILRTAAAEVMDAALSDDLSSLRERWQKIAGLAK 207

Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340
              AP  +++E  LI R +RD+   D  EI V  E  + +    ++ + P   R V+ Y 
Sbjct: 208 QRKAPAELHQEAGLIYRIVRDMLTADTDEIWVDEEAIFEQTVALVREMAPGSERKVKLYP 267

Query: 341 --DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398
                 +F    ++ Q +S     V L S GY++ ++TEAL  IDVN+G+      +EDT
Sbjct: 268 AASKASLFAHHDVDRQTESAFSRIVQLASGGYIVWDETEALTVIDVNTGKFIGTDKLEDT 327

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
             +TN EAAE IAR LRLRD  G+I++DFIDMEE+ N + + ++L+E +++DR+R  V  
Sbjct: 328 LYRTNSEAAEAIARLLRLRDTGGIIIIDFIDMEEEMNRQRISQQLEELVRRDRSRCTVVG 387

Query: 459 ISNFGLLEMSRQRIRSSVLE 478
            +  GL+E++R++ R++   
Sbjct: 388 WTRLGLMEITRKKARATAAS 407



 Score = 83.9 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 21/89 (23%)

Query: 1  MA--NKMLIDASHVEETRV-----VVLRDNRVEELDFESEHKKQ--------IKGNIYLA 45
          M+   ++L+      + RV      VL +  + +   E +  +Q        + GNIY  
Sbjct: 1  MSVLKQLLV------QCRVGGVQAAVLENRVLADYASERQDPEQPGRTQPGAVLGNIYRG 54

Query: 46 KVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          KV  V P +QAAF+D G  ++ FL   ++
Sbjct: 55 KVVNVLPGMQAAFLDIGLAKNAFLYIDDV 83


>gi|253577863|ref|ZP_04855135.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850181|gb|EES78139.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 398

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 1/305 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    +LVQI +E    K  AVTT L+  G+Y VL     K    S+   +   R +   
Sbjct: 89  KAGDEILVQISREAMKGKLPAVTTNLNFTGKYLVLTTGDKKFGLSSKLSNDDRSRISKWM 148

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
            A         G+I+RT  A  +K EI ++ EYL  L+        +      VY     
Sbjct: 149 EAEVNRPDKEFGIIVRTNAADASKEEILKELEYLKGLYHKAAVDGRSRTCFSCVYRTEPF 208

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSGIEV 353
              A+RD   +++ EII    +  R+  D++    P     +R Y+D     +    +E 
Sbjct: 209 YISAVRDANSRNLEEIITDIPEISRQISDYLNSNSPEEKEKLRFYDDKLLPLYKLYRLET 268

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            L+ +   +V L S G+++I QTEA VSIDVNSG+ T +  +++T  + NLEAA+EIARQ
Sbjct: 269 VLEEIQHEKVWLNSGGFLVIQQTEAFVSIDVNSGKFTGKKKMQETYRKINLEAAKEIARQ 328

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR+L+G+I++DFI+ME + +   +   L++ L+KD  + +   I+   +LE++R+++R
Sbjct: 329 LRLRNLSGIILIDFINMENQDHQDELFHVLQKYLRKDPVKAKAVDITPLHILELTRKKVR 388

Query: 474 SSVLE 478
             V+E
Sbjct: 389 KPVIE 393



 Score = 51.1 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 21 RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           D +V EL FE   +K   GNIY+ ++  +  ++ AAFV  
Sbjct: 20 EDGKVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQI 60


>gi|310643573|ref|YP_003948331.1| ribonuclease, rne/rng family [Paenibacillus polymyxa SC2]
 gi|309248523|gb|ADO58090.1| Ribonuclease, Rne/Rng family [Paenibacillus polymyxa SC2]
          Length = 380

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 171/309 (55%), Gaps = 2/309 (0%)

Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226
           +  I E++K  Q ++VQ++KE  G+KGA VTT+ SL GR+ V MP         +     
Sbjct: 70  KPSISELLKVGQEIVVQVLKEAVGSKGARVTTHFSLPGRWIVYMPRADYVAVSKKIEREG 129

Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
              +   +           GVI+RT     +   I+ D   L + W  ++  A    AP 
Sbjct: 130 ERAR--LKAMGEQLRTGEEGVIIRTVSEEMSIEAIENDLNQLRKQWAAIQRKAGEHSAPC 187

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346
            ++ + ++++R IRD++  +  E+++  E+  ++A+  ++ +  + A +         IF
Sbjct: 188 ELHRDLSIVQRLIRDVFTPEQDELVIDSEEQAKDAEVMLQQIGSAKAHVSIFRSAEETIF 247

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
              GI  QL+     +V L   GY++I+ TEAL  +DVN+G+ T    +E+T  QTN+EA
Sbjct: 248 KAYGIHEQLERDFARKVWLQGGGYIVIDHTEALTVVDVNTGKFTGGSNLEETVTQTNIEA 307

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEIAR +R+RD+ G+I++DFIDME+++N R V   L+  LKKDR +  V   +  GLLE
Sbjct: 308 AEEIARLVRVRDIGGIIIIDFIDMEQEENRREVSSVLEARLKKDRTKSYVVGWTRLGLLE 367

Query: 467 MSRQRIRSS 475
           M+R+++R  
Sbjct: 368 MTRKKVREE 376



 Score = 83.9 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          + +L + R+ E   E   K+ I G+ + A+V  V P +QAAFVD G  ++ FL   ++
Sbjct: 1  MALLEEGRLVEYAAELPRKRGILGSFFKARVVNVLPGMQAAFVDIGQRKNAFLYVDDV 58


>gi|150015397|ref|YP_001307651.1| ribonuclease [Clostridium beijerinckii NCIMB 8052]
 gi|149901862|gb|ABR32695.1| ribonuclease, Rne/Rng family [Clostridium beijerinckii NCIMB 8052]
          Length = 482

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 193/429 (44%), Gaps = 7/429 (1%)

Query: 114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173
             N+  +E +   +       E       N + +          +     +       + 
Sbjct: 18  KSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGLDKEGYLYYSDELKAKG 77

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
           IK    +LV+++KE   +KGA +T  +S+ G+Y VL     +G   S++I +   +  L 
Sbjct: 78  IKKGDDILVEVLKEPLNDKGAKLTAKVSIPGKYIVLNCYE-QGIEFSKRIEDKEKKIELL 136

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
                L+    + + +RT GA+     +K +   L   + N+ +   +S+    +Y E  
Sbjct: 137 SNIEPLK---DVCITVRTEGANVDINILKNEISKLYDEFQNIDKKMKHSLGVRKIYGEDL 193

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
            + + + +   ++I +I V     + +   F K            Y     +F   GIE 
Sbjct: 194 TLTKLLMNFSGEEIIKIYVDNSIDFDKISSFAKGQENLKIEKYEGYRK---LFDFYGIEK 250

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           +L  L   +V L   GY++I++TEA+  IDVNSG++ +E     T L+TNLEAA EI +Q
Sbjct: 251 ELLRLRHNKVNLQCGGYIVIDRTEAMYVIDVNSGKNIKEKSFNKTILETNLEAAREIGKQ 310

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR+L+G+IV+DFIDM +K     V   LKESL+ D+  V++   +   L++++R+R  
Sbjct: 311 IRLRNLSGIIVIDFIDMRDKSQRDIVMDALKESLRLDKGNVKIFPFTQLDLVQIARKRQG 370

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+ E   + C+ CKG G I   S +   I   +     + + +   +   S     +  
Sbjct: 371 KSIYEYMEEECSLCKGRGIILKLSYIEGLIKNDIVRMQEESSINCFHIQMDSVYKDRIRE 430

Query: 534 QKRATIVEY 542
                + E 
Sbjct: 431 NIFEFMKEI 439



 Score = 75.0 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/449 (11%), Positives = 127/449 (28%), Gaps = 32/449 (7%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           RV +  +N + E   E    + I G IY  K+  + P++ + FVD G ++ G+L + +  
Sbjct: 14  RVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGLDKEGYLYYSD-- 71

Query: 76  PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEE 135
                                +       DD+    +  P +    ++    +   +   
Sbjct: 72  -------------------ELKAKGIKKGDDILVEVLKEPLNDKGAKLTAKVSIPGKYIV 112

Query: 136 ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195
            +      +    +ED +         +  +  CI         + + I+K E       
Sbjct: 113 LNCYEQGIEFSKRIEDKEKKIELLSNIEPLKDVCITVRT-EGANVDINILKNEISKLYDE 171

Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR--TAG 253
                        +     +  T+++ + N    + +K           +    +     
Sbjct: 172 FQNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNSIDFDKISSFAKGQENL 231

Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA-IRDLYCKDISEIIV 312
                   ++ F++     + +R            Y   +  +   + D+      +   
Sbjct: 232 KIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMYVIDVNSGKNIKEKS 291

Query: 313 SGEKGYREAKDFMKL--LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
             +       +  +          +                   +    +  + L     
Sbjct: 292 FNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVMDALKESLRLDKGNV 351

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
            I         +D+      R+       ++      +     L+L  + GLI  D + M
Sbjct: 352 KIF----PFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGIILKLSYIEGLIKNDIVRM 407

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAI 459
           +E+ +      ++ +S+ KDR R  +   
Sbjct: 408 QEESSINCFHIQM-DSVYKDRIRENIFEF 435


>gi|15894538|ref|NP_347887.1| ribonuclease G/E family protein [Clostridium acetobutylicum ATCC
           824]
 gi|15024182|gb|AAK79227.1|AE007638_9 Ribonucleases G/E family protein [Clostridium acetobutylicum ATCC
           824]
 gi|325508671|gb|ADZ20307.1| Ribonuclease G/E family protein [Clostridium acetobutylicum EA
           2018]
          Length = 481

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 198/417 (47%), Gaps = 20/417 (4%)

Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223
           +         IK    +LV+IVKE  G+KG  V+  +++ GRYSV++   +    IS+KI
Sbjct: 68  YMDSKFNNVNIKKGDEMLVEIVKESIGSKGPKVSNAITIPGRYSVIIT-LNTDINISKKI 126

Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283
           ++    K LKE  +  E    +GV++RT   + +  +I  + E L   +  +R+ A  S 
Sbjct: 127 SDSKYIKMLKENVKKPE---DVGVMIRTNAQNVSLEDINNEIENLYETYVGIRKKAKYSN 183

Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
              +VY  G  I+R +RD        ++V+ +K +   ++++ L        ++ ++   
Sbjct: 184 KVGIVYNAGGTIERIMRDNEDVADLTVVVNDKKDFDNIQNYI-LTKKDMKCNLKLHDSNI 242

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
            +    G E ++  L   +V L   GY+II+ TEA+  IDVNSG++ +   +  TA  TN
Sbjct: 243 SLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEAMHVIDVNSGKNIKNSNLARTAFLTN 302

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
           +EAA+E ARQ+ LR+L+G+IV+DFID+ +++    +   LK+   KD+ +  V   +   
Sbjct: 303 MEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSKIVNVLKQGFLKDKNKTIVYPFTELN 362

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS----VALSILRSVEEYLLQYTA--- 516
           +++++R+R   S+ +   + C  C G+G   +       +   ++R +EE+    +    
Sbjct: 363 IVQIARRRRGKSIYDYLEEKCDSCIGSGRKLNFEYMKNLMRNKVIRFLEEHEKAKSIYIE 422

Query: 517 --HNIIVHTHSDVVLYLLNQKRATIV-EYEARFG---VSINVV--IGIELADKLFYI 565
                      DV  ++ +     +    E +       IN           + + I
Sbjct: 423 MDKRYENKISLDVEGFIKDIGADNLSVYIEYKSKPDVFKINFRELSSDMEKMQQYKI 479



 Score = 65.0 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
          V VL +   +E   E E ++   G IY   V  + P+++ AFVD G  ++G+L 
Sbjct: 15 VAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDIGNGKNGYLY 68


>gi|326791197|ref|YP_004309018.1| ribonuclease E [Clostridium lentocellum DSM 5427]
 gi|326541961|gb|ADZ83820.1| Ribonuclease E [Clostridium lentocellum DSM 5427]
          Length = 475

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 171/382 (44%), Gaps = 8/382 (2%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
                L VQ+VK+  G KG  +T  ++L GR+ V +P  + G  IS+KI +   R+ LK+
Sbjct: 82  SPGSRLPVQVVKQNSGEKGYKLTGKVNLMGRFLVCLPFET-GINISKKIKDQEIREVLKQ 140

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             + L      G ++RT   + ++  +++D   L+   D   +          +YE+  L
Sbjct: 141 KLQCLSNGK-YGFVVRTTAKNASESLLEKDALELIEKADAFMKAKDYLSKGSQLYEDPPL 199

Query: 295 IKRAIRDL-YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
             + +R+     +  EII + +      +  +           +   +   +F    IE 
Sbjct: 200 FMQIVREELEGAEKVEIICNQQSVLSAIQADIGEEDDEEHISFKLCNEIEGLFQVYDIEK 259

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           +   L   ++ L + G ++I+ TEA+  IDVNS ++      +   L  NL A +E   Q
Sbjct: 260 KRTQLLNRKIWLKNGGNLVIDYTEAMTVIDVNSAKAILTKNPQKAVLDLNLLAVKESILQ 319

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK--DRARVQVGAISNFGLLEMSRQR 471
           +  R+L+G+IV D ++M  +++ + + +  KE L K  DR R +V  +++ GLL+ SR +
Sbjct: 320 MLRRNLSGIIVTDLVEMPSQEDKQYIYEYAKELLNKWGDR-RTKVYPLTDLGLLQFSRTK 378

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
               + +     C  C+      S S   + + +++++   +     + V        +L
Sbjct: 379 KYIGLPQQLFTSCIQCEAPYSGNSLSYYMMELEKTIKDISEKTEHTAVFVEVDPIFYQFL 438

Query: 532 LNQKRATIVEYEARFGVSINVV 553
           L  K   I + E  + + + + 
Sbjct: 439 L--KNNCIEQLENAYNLQLQIE 458



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 14/86 (16%)

Query: 1  MANKMLI--DASHVEETRVVVLRDNRVEELDFE----SEHKKQIKGNIYLAKVTRVEPSL 54
          M  ++LI  +      T++ +L+++       E    S+ + +I     + +V +V  +L
Sbjct: 1  MRKQILIEKNVLS---TQIAILQESEFISFYLETCIKSDKQNRIV----VGQVEQVVKNL 53

Query: 55 QAAFVDYGGNRHGFLPFLEIHPDYYQ 80
          +A FV++G  ++G L   ++ P+ YQ
Sbjct: 54 KAVFVNFGEEKNGLLHIKQV-PECYQ 78


>gi|65321815|ref|ZP_00394774.1| COG1530: Ribonucleases G and E [Bacillus anthracis str. A2012]
          Length = 412

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 165/313 (52%), Gaps = 11/313 (3%)

Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231
             I   Q +LVQ+VKE    KG  +T  +   G+Y V MP   +   +SRKI N      
Sbjct: 71  YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
            ++    +EV    G I R+A       EI+ + + L +L++ ++       AP L++  
Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
              + R  ++   + I +++V      +E ++ +     S+      Y +   +F   GI
Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           E +++   Q  V LP+  Y+I+ Q E +  IDVN+G+ T +  ++DT L+TN  AAEEIA
Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLRD+ G+I++DFI+M+ +++   V + L  +++ DR   +V   +  G+LEM+R+R
Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359

Query: 472 IRSSVLESTTKVC 484
            + S+ +   + C
Sbjct: 360 KKHSLRDVLLEEC 372



 Score = 80.4 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          E RV +    ++ E  ++   +++I G+IY+ ++ R    + AAFV+ G  +H +L + +
Sbjct: 7  EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66

Query: 74 IHPDY 78
          +   Y
Sbjct: 67 VPSAY 71


>gi|294784573|ref|ZP_06749862.1| ribonuclease G [Fusobacterium sp. 3_1_27]
 gi|294487789|gb|EFG35148.1| ribonuclease G [Fusobacterium sp. 3_1_27]
          Length = 458

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 113/444 (25%), Positives = 200/444 (45%), Gaps = 11/444 (2%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++  V    + +  D+ L+E+    N  +E           D+++N E +      E   
Sbjct: 7   LSKSVYETKLVLLEDNKLDEMYIERNNQKEISGNIYKGKVVDILNNGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ   E R  KGA +T   S+ G   VL+   SK  +IS+
Sbjct: 67  FLSFENKKNIPKFNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLL-LKSKNLSISK 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI +  +   LK I   +      G+ILRT    +++  +  ++   +   +N       
Sbjct: 126 KIKDIEEVNRLKNIFLSI----DNGLILRTNSKGKSEESLLEEYRK-LEDINNQINKDFE 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +   ++Y+  ++ K+A+  L       II              ++      + +R+Y  
Sbjct: 181 KINIGVLYDVNSISKKAVILLDDTVEEFIIDDKNIFEEIKVLLEEIGKKDLIKKLRKYFK 240

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
              IF    I  Q++     +V L S  Y+II +TEAL+SIDVN+G++T     ++   Q
Sbjct: 241 DEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
           TNLEA +EIARQ++LR+LAG+I+VDFIDM++  + + + ++ K+ L +DR  +     +N
Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRILEEFKKYLNEDRTEINSVEYTN 360

Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT----AH 517
            GL++ +R+R    +     + C YC+G GY  S+  V L++L  +   +          
Sbjct: 361 LGLIQFTRKRQGKELAFYYREKCLYCEGTGYFLSKDRVILNLLEDLNSQIKSQDIKKIII 420

Query: 518 NIIVHTHSDVVLYLLNQKRATIVE 541
                   ++  Y+ N K   I +
Sbjct: 421 RTKKDIIKELNKYINNNKIECIED 444



 Score = 83.5 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 21/176 (11%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            K LI +  V ET++V+L DN+++E+  E  ++K+I GNIY  KV  +  + +  FVD G
Sbjct: 2   KKYLILSKSVYETKLVLLEDNKLDEMYIERNNQKEISGNIYKGKVVDILNNGEIIFVDIG 61

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
             ++ FL F                      N        + D +     T P D    +
Sbjct: 62  LEKNAFLSF---------------------ENKKNIPKFNIDDKLIVQAETEPRDEKGAK 100

Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
           +    + + E     + S N  +   ++D++  +             I       +
Sbjct: 101 LTLDYSINGENLVLLLKSKNLSISKKIKDIEEVNRLKNIFLSIDNGLILRTNSKGK 156


>gi|291522331|emb|CBK80624.1| Ribonucleases G and E [Coprococcus catus GD/7]
          Length = 396

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 2/304 (0%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
              ++VQ+ KE    K   +T  LS  GRY+VL    +  +  +R        +      
Sbjct: 90  GDEIVVQVEKENLKTKAWFLTGRLSFPGRYTVLTRGKNGIQISARIKDTAERDR--LTGI 147

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
              E   G   ++RT    +    I  +   L   ++ +   A        +    +   
Sbjct: 148 VSGEEIEGAAWMIRTEAFGQRAEVIGEEMHRLEVDYNRIMSTACTRTCFSKLMSGDSPYT 207

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
           + I+         +     + Y E K+       S   +    +D +P+    GIE Q+D
Sbjct: 208 QLIKKFAHGSTCRVTTDLPEVYDELKENFGRWGLSEEALQYYKDDSYPLIKLKGIEAQMD 267

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
              Q  V + S  Y++I  TEAL  IDVN+G++  +  +E+   + NLEAA+E+ RQLRL
Sbjct: 268 KALQKRVWMRSGAYLVIEPTEALTVIDVNTGKAIGKQKMEENFFKINLEAAQEVCRQLRL 327

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           R+++G+++VDFI+M++ ++ +++   L+E   KD  +  V   ++  L+EM+R+++  S+
Sbjct: 328 RNISGIVIVDFINMKDPEHLKALMDVLREEAAKDSVQTTVVDRTSLHLVEMTRKKVHRSL 387

Query: 477 LEST 480
            E  
Sbjct: 388 AEQV 391



 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  +++I     +     +  ++ + EL+ E +  +   G+IY+ KV  +  ++QAAFV+
Sbjct: 1  MKRQIVITGWQSKVL-TALYEEDTLCELNLEPKKSQVRVGDIYIGKVKHIVQNIQAAFVE 59

Query: 61 Y 61
           
Sbjct: 60 I 60


>gi|302386376|ref|YP_003822198.1| RNA-binding protein AU-1/Ribonuclease E/G [Clostridium
           saccharolyticum WM1]
 gi|302197004|gb|ADL04575.1| RNA-binding protein AU-1/Ribonuclease E/G [Clostridium
           saccharolyticum WM1]
          Length = 400

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 172/372 (46%), Gaps = 5/372 (1%)

Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167
               V I  +++   +  I         ++I +A  D+          +   +    +R 
Sbjct: 22  ETVQVDIEPENNRPVLGNIYIGKVNHIVKNINAAFVDIGKGQMGYLSLNDAWIHFADQRP 81

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
           Y     ++    ++VQ+ ++    K   +T  L++ GRY VL     +    ++   +  
Sbjct: 82  YE--GKLRQGDEIIVQVERDAVKTKAPVLTGNLNITGRYFVLTSGKKQIGFSTKIA-DQA 138

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            ++ +K+           G+I+RT      K E++ +   L + + NV +   +     L
Sbjct: 139 WKQEIKQDLES-RKEESFGIIVRTNAYKVPKAELESELVQLKKSFKNVLDNGKHRTCYSL 197

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF- 346
           +Y         +RD     +  ++      Y   KD++    P   R++  YED      
Sbjct: 198 LYSSAPSYLTGLRDSLKASLEAVVTDEADIYDAVKDYLVQYQPGDLRLLTWYEDRLLPLG 257

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               IE  ++      V L S GY++I  TEALV IDVN+G+ + +    +T  + NLEA
Sbjct: 258 KLYRIEKTMEEALGKRVWLKSGGYLVIEPTEALVVIDVNTGKYSGKKEHRETIKKVNLEA 317

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           AEEI  QLRLR+L+G+I++DFIDME +++ R + ++L+E + KD  +  V  ++   L+E
Sbjct: 318 AEEIGHQLRLRNLSGIIIIDFIDMEAEEDKRILMERLEEIVSKDPVKTTVVEMTKLNLVE 377

Query: 467 MSRQRIRSSVLE 478
           ++R++IR  + E
Sbjct: 378 VTRKKIRKPLYE 389



 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 3  NKMLIDASHVEETRVVVLRDNR-VEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
          NK++I   +     + +L+  R   ++D E E+ + + GNIY+ KV  +  ++ AAFVD 
Sbjct: 2  NKLIITRWNGSV--ITLLQSGRETVQVDIEPENNRPVLGNIYIGKVNHIVKNINAAFVDI 59

Query: 62 GGNRHGFLPFLE--IH 75
          G  + G+L   +  IH
Sbjct: 60 GKGQMGYLSLNDAWIH 75


>gi|213420401|ref|ZP_03353467.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 219

 Score =  160 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 106/189 (56%)

Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376
            Y    +F    +P     +  Y    PIF    +E ++    + +V L S GY+II+QT
Sbjct: 7   TYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQT 66

Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
           EA+ ++D+N+G       ++DT   TN+EA + IARQLRLR+L G+I++DFIDM  + + 
Sbjct: 67  EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 126

Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
           R V   L+++L KDR +  +   S  GL+EM+R+R R SV       C  C G G +++ 
Sbjct: 127 RRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTV 186

Query: 497 SSVALSILR 505
            +V   I+R
Sbjct: 187 ETVCYEIMR 195


>gi|237740804|ref|ZP_04571285.1| ribonuclease G [Fusobacterium sp. 2_1_31]
 gi|229422821|gb|EEO37868.1| ribonuclease G [Fusobacterium sp. 2_1_31]
          Length = 459

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 213/466 (45%), Gaps = 19/466 (4%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161
           ++ +     + +  D  LEE+       +E           D+++  E +      E   
Sbjct: 7   LSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDIGLEKNA 66

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
                             L+VQ+  E R  KGA +T   S+ G   VL+PN SK  +IS+
Sbjct: 67  FLSFENKKNIPKFNIFDSLIVQVETEARDGKGARLTLDYSINGENLVLLPN-SKNLSISK 125

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           KI N    K LK     + +    G+ILRT    ++   +  +++  +   +N  +    
Sbjct: 126 KIENLETIKKLK----DIFLNIDKGLILRTKSVEKSPEALLEEYKK-LEAINNQIQKDFK 180

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
                L+Y+  +++K+A+  L  +DI E I+  E  + + K+ ++    +Y     +   
Sbjct: 181 EKNTTLLYDNNSILKKAL-TLLDEDIDEFIIDDEDSFNKIKNTLEENKRNYLLKKFKKYF 239

Query: 342 -PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400
               IF    ++ Q++     +V L S   ++I +TEALVSIDVN+G++T     ++   
Sbjct: 240 KDEDIFSYYKLDTQIERALDRKVYLESGASIVIEKTEALVSIDVNTGQNTGNQSSQNLIF 299

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
            TNLEA +EIARQ++LR+LAG+I++DFID+++  + + + ++LK  LKKDR  +     S
Sbjct: 300 NTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISDRKKILEELKRYLKKDRMEINSLDFS 359

Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
           + GL++ +R+R    +     + C YC+G  Y+ S+  + L++   +   +     + I+
Sbjct: 360 HLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLSKDRIILNLFAELNSQIKYNDLNKIV 419

Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           + T  D++  +                  I          + + IE
Sbjct: 420 IKTKKDIIKEIKKLIS----------NPKIEYEEDSNFYKEGYKIE 455



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+   LI + +  ET++ +L D+++EE+  E E +K+I GNIY  K+  +    +  FVD
Sbjct: 1  MSK-CLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVD 59

Query: 61 YGGNRHGFLPF 71
           G  ++ FL F
Sbjct: 60 IGLEKNAFLSF 70


>gi|149072082|ref|YP_001293522.1| ribonuclease E [Rhodomonas salina]
 gi|134303033|gb|ABO70837.1| ribonuclease E [Rhodomonas salina]
          Length = 429

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 4/318 (1%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            I   +    I++VQ++KE  G KG  VT  ++L GRY  L+P        SR   +  +
Sbjct: 82  NITNHLSCNSIVMVQVLKEPNGQKGPTVTGDITLRGRYLTLLPFEED-IFFSRDFESNEN 140

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
              L+ +   L  P   G+++       +   I +DF  L+  WD++        AP L+
Sbjct: 141 IVYLR-LLFTLLKPKSTGILINKKAIHASINNIIQDFYSLLYEWDSICHNLNYQSAPFLI 199

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
               N I + ++ +Y + +  I+V  ++G ++    +   +      +      +  FF 
Sbjct: 200 SRNKNFISKVLQKVYSEKVDTILVDSKQGSKKIASTVTRWIKQKNNTLSIKYFENHNFFV 259

Query: 349 SGIEVQL--DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               + L    L Q+ + L   GY+II +TEAL +IDVNSG     +   +T L  N +A
Sbjct: 260 RDYNLDLIVYDLLQSRINLLGGGYIIIEKTEALTTIDVNSGSFNYLNNPRETILLVNRKA 319

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A++IAR LRLR+++G+I+VDFIDM+ +++  ++       LK+D  R ++   S  GL+E
Sbjct: 320 AKQIARHLRLRNISGVIIVDFIDMKNQQDQLALLLHFDSFLKQDEQRPRIIQFSELGLVE 379

Query: 467 MSRQRIRSSVLESTTKVC 484
           ++R+R   S+LE  +   
Sbjct: 380 LTRKRQGRSLLEMFSNSN 397



 Score = 53.1 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV--DYGGNRHGFLPFL 72
          D  + +L  E        G+IY+  V  V PS+ AAF+  DY    +GF+   
Sbjct: 20 DTVITQLIIERGT--YHIGDIYIGIVETVLPSINAAFIILDY-SENNGFIHIN 69


>gi|197301704|ref|ZP_03166774.1| hypothetical protein RUMLAC_00430 [Ruminococcus lactaris ATCC
           29176]
 gi|197299144|gb|EDY33674.1| hypothetical protein RUMLAC_00430 [Ruminococcus lactaris ATCC
           29176]
          Length = 321

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 4/306 (1%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
              LLVQI +E    K   VT  L+L GRY+VL    ++    S+      D   L+  A
Sbjct: 18  GDELLVQISREAVKTKAPTVTGNLNLTGRYAVLTHGNTRIGVSSKIPKKERDAYKLRLQA 77

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
                    G+I+RT         + ++ E L + ++ +   A++ V    +        
Sbjct: 78  ---YQNDRFGIIVRTNAKEAPFEAVVKEIEDLKKEYERLTSNAMSRVCFSCLKSAPPSYI 134

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             +++ Y   + EIIV+    Y     F  + +      I    +  +P+      +  +
Sbjct: 135 TDLKNAYMDGMQEIIVNDPDLYHTICSFFDREIPERSYLIRLYDDAGYPLGKLYSTQTAI 194

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++  +  V L   GY++I  TEAL  +DVNSG+S ++      AL+ NLEAA E ARQ+R
Sbjct: 195 ENALKERVWLKHGGYLVIQVTEALTVVDVNSGKSIKKSKNTPDALKLNLEAARETARQIR 254

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+L+G+I+VDF++M++ +   ++ ++ +  L KD  +  +  I+  GL E++R+++R  
Sbjct: 255 LRNLSGIILVDFVNMDDPEMEETLFQEFRFYLTKDPIQTTLVDITALGLAEVTRKKVRKP 314

Query: 476 VLESTT 481
           + E  T
Sbjct: 315 LYEMIT 320


>gi|169344180|ref|ZP_02865162.1| ribonuclease, Rne/Rng family [Clostridium perfringens C str.
           JGS1495]
 gi|169297638|gb|EDS79738.1| ribonuclease, Rne/Rng family [Clostridium perfringens C str.
           JGS1495]
          Length = 480

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    ++V+++KE+ G+KGA VT+ +SLAGRY VL  +     +ISRKI N       KE
Sbjct: 77  KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +   L  P+ +GV +RT   S +  EI+ + E L + +  V      S+ P  +  +G+L
Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYKNYKEVIREGKFSLNPKKIMGKGDL 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I + IRD      S IIV   + Y   KD +     S    V  Y+D   +F   GIE +
Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVTLYDDARSLFDYYGIEKE 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + SL    V L   G ++I +TEA+  IDVNSG++T     E TA +TN  AA EIARQ+
Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           ++R+L G+I+VDFIDM  ++N + + K LK+  K D  R ++   +  GL++++R R   
Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ E   + C  C G G     S + L +   + +   +    +  +  +S     +   
Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429

Query: 535 KRATIVEY 542
               + E 
Sbjct: 430 IFEFLKEI 437



 Score = 68.1 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           RV +  +N + E   E E  + ++G IY   V RV P +++AF+D G ++          
Sbjct: 14  RVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65

Query: 76  PDYYQIPFSDRQALLKESNIAQTDSEA 102
              Y I   D + L +   I     + 
Sbjct: 66  ---YMILGEDEKDLKQGDGIIVEVLKE 89


>gi|225572159|ref|ZP_03781023.1| hypothetical protein RUMHYD_00453 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040331|gb|EEG50577.1| hypothetical protein RUMHYD_00453 [Blautia hydrogenotrophica DSM
           10507]
          Length = 395

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 153/308 (49%), Gaps = 4/308 (1%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               +LVQ+ +E    K  +VTT L+  G Y VL  ++ K    S+   +  +       
Sbjct: 84  PGDQVLVQVSREAMKGKAPSVTTRLNFTGTYLVLTTDSRKIAFSSKLDADSKE---RLGA 140

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                +    G+I+RT     T  +I ++F  L    + V     N     L+ E     
Sbjct: 141 LLSPLLDGTFGMIVRTNAKEGTPEQILQEFRELKTRLERVLSQGKNRRCFSLLDEAEPFC 200

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYEDPHPIFFRSGIEVQ 354
            + + + Y + + EI+    + Y   ++ + +      + +    +   P++    +E  
Sbjct: 201 PKILHNTYTEGLEEIVTDDPQIYLNLQELLHMERTLDISLLRFYEDSLLPLYKLYRLETA 260

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           L+ +   +V L S GY++I QTEA VSIDVNSG+   +   E+T  + NLEAA +IARQL
Sbjct: 261 LEEIASEKVWLKSGGYLVIQQTEAFVSIDVNSGKFAGKKKAEETYRKINLEAAAQIARQL 320

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR+L+G+I++DFI+M+   +   +   L++ L+KD  +  V  ++   ++E++R+++R 
Sbjct: 321 RLRNLSGIILIDFINMDNSDHKEELLHVLQKYLRKDPVKGVVVDMTKLNIVEVTRKKVRR 380

Query: 475 SVLESTTK 482
            + E  ++
Sbjct: 381 PLFEDLSE 388



 Score = 58.1 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
           +    ++ EL+F  E KK I GNIY+ +V  +  ++QAAF+     ++G        P 
Sbjct: 12 ALEEAGKILELNFVREQKKSILGNIYVGQVQNLVSNIQAAFIQI---QNGL-------PC 61

Query: 78 YYQIPFSDRQALLKESNIAQT 98
          YY +   D  A+  +    + 
Sbjct: 62 YYSLREQD-TAIYAQERTHEK 81


>gi|110803091|ref|YP_699407.1| ribonuclease [Clostridium perfringens SM101]
 gi|110683592|gb|ABG86962.1| ribonuclease, Rne/Rng family [Clostridium perfringens SM101]
          Length = 480

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    ++V+++KE+ G+KGA VT+ +SLAGRY VL  +     +ISRKI N       KE
Sbjct: 77  KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +   L  P+ +GV +RT   S +  EI+ + E L + +  V      S+ P  +  +G+L
Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYKNYKEVIREGKFSLNPKKIMGKGDL 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I + IRD      S IIV   + Y   KD +     S    V  Y+D   +F   GIE +
Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVTLYDDARSLFDYYGIEKE 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + SL    V L   G ++I +TEA+  IDVNSG++T     E TA +TN  AA EIARQ+
Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           ++R+L G+I+VDFIDM  ++N + + K LK+  K D  R ++   +  GL++++R R   
Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ E   + C  C G G     S + L +   + +   +    +  +  +S     +   
Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429

Query: 535 KRATIVEY 542
               + E 
Sbjct: 430 IFEFLKEI 437



 Score = 68.1 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           RV +  +N + E   E E  + ++G IY   V RV P +++AF+D G ++          
Sbjct: 14  RVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65

Query: 76  PDYYQIPFSDRQALLKESNIAQTDSEA 102
              Y I   D + L +   I     + 
Sbjct: 66  ---YMILGEDEKDLKQGDGIIVEVLKE 89


>gi|163814054|ref|ZP_02205446.1| hypothetical protein COPEUT_00207 [Coprococcus eutactus ATCC 27759]
 gi|158450503|gb|EDP27498.1| hypothetical protein COPEUT_00207 [Coprococcus eutactus ATCC 27759]
          Length = 387

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 141/310 (45%), Gaps = 3/310 (0%)

Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230
              ++    ++VQI ++    K    ++ L++ G YSV+         IS KI++   R 
Sbjct: 80  HTKLRIGDDVVVQISRDAVKTKNPVGSSELTIRGEYSVVHT--GNQIGISGKISSRKLRD 137

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
           +LK+      +P  MG I+RT  A      IK++   L    + + + A        ++ 
Sbjct: 138 DLKK-LAKETLPDNMGCIIRTNAAGAEHDVIKKELNDLAGRLEQILKAATTRKCFSCLFR 196

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
                   I  +  + I E +      +    ++           V    D  P+     
Sbjct: 197 NPPEYIENITLIGSQKIDEFVTDDLDIFNVFNEYSGKKGLCDINAVLYSNDNCPLSAIYN 256

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           ++ +++   +  V L S  Y+II QTEA+V +DVN+G+S     +    L+ N EAA E 
Sbjct: 257 LKKEVEGALKERVWLKSGAYLIIQQTEAMVVVDVNTGKSVSGKDMSQHILKVNTEAAVET 316

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
            RQLRLR+L+G+IV+DFI+M+   +   +   L + L  D    +   I+  GL+E++R+
Sbjct: 317 CRQLRLRNLSGIIVIDFINMKNPDDIYKIRDVLIKELADDPVPAKYVDITKLGLIELTRK 376

Query: 471 RIRSSVLEST 480
           +++  + E  
Sbjct: 377 KLKRPLHEML 386



 Score = 55.0 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 18  VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
             + D +V +L+        + GNIY+ KV  +  ++ A F+DYG          +  P 
Sbjct: 16  ATIHDGKVTDLNL--SENDTVLGNIYVGKVANIVDNINACFIDYG----------DKLPC 63

Query: 78  YYQIPFSDRQ-ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
           YY +  +D   A  KE    +   + V         T     S E           T  +
Sbjct: 64  YYSLDDNDIIYADGKEHTKLRIGDDVVVQISRDAVKTKNPVGSSELTIRGEYSVVHTGNQ 123

Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKF 164
             IS         +D+K  + E +P   
Sbjct: 124 IGISGKISSRKLRDDLKKLAKETLPDNM 151


>gi|291563404|emb|CBL42220.1| Ribonucleases G and E [butyrate-producing bacterium SS3/4]
          Length = 430

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 96/413 (23%), Positives = 174/413 (42%), Gaps = 40/413 (9%)

Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
            D     +    + + EE   I     +   ++I +A  +    V           P   
Sbjct: 20  KDGHAAQIDFEPEAAEEETGVIFVGKVKNISKNINAAFVEYRPGVNGFYSLKGNARPIYA 79

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +      +K    +LVQ+ +     K A +T+ L+L G+ +VL    S     ++   
Sbjct: 80  DGKTE-HGPLKAGDEILVQVERSAVKTKDAVLTSNLTLTGQTAVLSAGKSSLGISAKIRD 138

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
                   +            G+++RT G +    ++ ++F  L   +  + + A +   
Sbjct: 139 KEWRDAVKQRW--ETTEHGDCGLVVRTNGEAAGIDKVFKEFAALYERYLVICKAAASRTC 196

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD--------------------- 323
             ++Y   +   RA+RDL   D  E++    + Y+E +D                     
Sbjct: 197 YSVLYRPESFAVRAVRDLKICDGLEVVTDLPEVYKELQDALGITDSRAAENSGTAADSEA 256

Query: 324 ----------------FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
                            M   M +    +R Y D  P+     +E  L       V L S
Sbjct: 257 AESSAATADSTAVDSAKMACSMAAGMPSLRLYTDDFPLTALYHLETILSQALSKTVWLKS 316

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            G ++I  TEAL  IDVN+ +S  +   ++T L+TNLEAA EIA QLRLR+L+G+I+VDF
Sbjct: 317 GGNLVIEPTEALTVIDVNTAKSVSKKTSKETYLKTNLEAAGEIAVQLRLRNLSGIIIVDF 376

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           IDM+E+++ +++   L+ ++  D  +  +  ++  GL+E++R++IR  + E  
Sbjct: 377 IDMKEEESRKTLLAALRRAVIADPVKTVLVDMTPLGLVELTRKKIRRPLHEQV 429


>gi|18311113|ref|NP_563047.1| ribonuclease, Rne/Rng family [Clostridium perfringens str. 13]
 gi|18145796|dbj|BAB81837.1| ribonuclease G [Clostridium perfringens str. 13]
          Length = 480

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    ++V+++KE+ G+KGA VT+ +SLAGRY VL  +     +ISRKI N       KE
Sbjct: 77  KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +   L  P+ +GV +RT   S +  EI+ + E L R +  V      S+ P  +  +G+L
Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           I + IRD      S IIV   + Y   KD +     S    V  Y+D   +F   GIE +
Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + SL    V L   G ++I +TEA+  IDVNSG++T     E TA +TN  AA EIARQ+
Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           ++R+L G+I+VDFIDM  ++N + + K LK+  K D  R ++   +  GL++++R R   
Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534
           S+ E   + C  C G G     S + L +   + +   +    +  +  +S     +   
Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429

Query: 535 KRATIVEY 542
               + E 
Sbjct: 430 IFEFLKEI 437



 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 16  RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
           RV + ++N + E   E E  + ++G IY   V RV P +++AF+D G ++          
Sbjct: 14  RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65

Query: 76  PDYYQIPFSDRQALLKESNIAQTDSEA 102
              Y I   D + L +   I     + 
Sbjct: 66  ---YMILGEDEKDLKQGDGIIVEVLKE 89


>gi|254520217|ref|ZP_05132273.1| ribonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913966|gb|EEH99167.1| ribonuclease [Clostridium sp. 7_2_43FAA]
          Length = 482

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 106/464 (22%), Positives = 193/464 (41%), Gaps = 11/464 (2%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162
             D+         N+   E      +   +  E       N V +          E    
Sbjct: 7   ERDEPLLRVAIKDNNVLSECFVEEHSSGPKMGEIYKGRVKNIVTAINSIFVDIGLEKEAY 66

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
            +       E IK    +LV+++KE   NKGA V+  +S+ GR+ VL    S      R 
Sbjct: 67  MYFSNEIKSEGIKKGDEILVEVIKEPINNKGAKVSKNISIPGRFMVLTLGGSGISFSKRI 126

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
            +     + L      +    G G+ +RT     +  ++  +   L+   + + +    S
Sbjct: 127 SSTEEKERIL----NAINNIDGYGITIRTEAVHASDEDLLAEKISLLSELEVIIKKLRYS 182

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
           +    VY E  ++ + IR+    +   I+   E           LL  +    + ++ + 
Sbjct: 183 LKLGKVYGENIILNKVIRENLGNECKIILNHEEDLNEVK----SLLEDNDKVNIEKFNNT 238

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
             +F   GIE ++  L   +V L   G ++I++TEA+  IDVNS ++ +    + T L+T
Sbjct: 239 RSLFDYYGIEKEILKLRHKKVALNCGGNIVIDKTEAMYVIDVNSSKNIKGRNFDKTILET 298

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           N+EAA+EI RQ+RLR+LAG+IV+DFIDM +      V   LKESLK+D+  +++   +  
Sbjct: 299 NIEAAKEIGRQIRLRNLAGIIVIDFIDMRDFSQKALVMDALKESLKEDKGNMKIFPFTEL 358

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
            L++++R+R   S+ E   + C  C   GY+   S +   I   + +   + + ++  + 
Sbjct: 359 DLVQIARKRRGKSIYEYLEEGCRRCNKEGYVLKLSYIEKLIRNEIIKCEEENSINSFYIE 418

Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
                  Y    K            +   + +      + + IE
Sbjct: 419 LD---SNYEEMVKGDIFSFLRNINSLDKEIYLNFTNGIEGYKIE 459



 Score = 64.6 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           ++ I+       RV +  +N + E   E        G IY  +V  +  ++ + FVD G
Sbjct: 2  REIFIERDEPL-LRVAIKDNNVLSECFVEEHSSGPKMGEIYKGRVKNIVTAINSIFVDIG 60

Query: 63 GNRHGFLPF-LEIHPD 77
            +  ++ F  EI  +
Sbjct: 61 LEKEAYMYFSNEIKSE 76


>gi|42773|emb|CAA38206.1| unnamed protein product [Escherichia coli K-12]
          Length = 341

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 124/331 (37%), Positives = 185/331 (55%), Gaps = 7/331 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            ++  ++      P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFSSKIKLNTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           R   IE+TA  TNLEAA+EIARQLRLRDL G
Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGG 341



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|160880695|ref|YP_001559663.1| ribonuclease [Clostridium phytofermentans ISDg]
 gi|160429361|gb|ABX42924.1| ribonuclease, Rne/Rng family [Clostridium phytofermentans ISDg]
          Length = 404

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 4/309 (1%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
              L+VQ++KE+   K   VTT ++  G+Y VLM  T      S+       ++      
Sbjct: 90  GDELVVQVIKEDIKTKAPVVTTSIAFTGKYVVLMHGTKTIGISSKI--GSEQKRKRLRSL 147

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
               +    G +LRT         I  + E L + +D +    +      L+Y+      
Sbjct: 148 VSPFLGEQYGFVLRTNAVEAEDNLIVEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFL 207

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQL 355
            AIRD + KD+  II      Y E K+++         ++    +    +     IE +L
Sbjct: 208 CAIRDGFAKDLEAIITDDLSLYDEIKEYLTEHQREDIGKLTFYQDKLLALSKLYSIETKL 267

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQL 414
               + +V LP  G ++I  TEAL  IDVN+G++  ++  +++T L+ NLEAAEEIA Q+
Sbjct: 268 SRALREKVWLPCGGSLVIQPTEALTVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQI 327

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
            LR+L+G+I+VDFIDM  +     + +   E L+KD  +  +  ++   L+E++R+++R 
Sbjct: 328 CLRNLSGIIIVDFIDMISEDAKTQLLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRK 387

Query: 475 SVLESTTKV 483
            + E     
Sbjct: 388 PLHEQMKHT 396



 Score = 61.9 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ K LI     +     +   N++ +++ + E +    GNIY+ KV  +  ++ AAFV+
Sbjct: 1  MSGK-LIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVE 59

Query: 61 YGGNRHGFLPFLE-IHPDYYQIPFSDRQALLKE 92
              +  +LP  + ++P +     SD+  +  E
Sbjct: 60 ISDRKMCYLPLADVVNPIFTHAKSSDKVNIGDE 92


>gi|118444771|ref|YP_878591.1| ribonuclease G [Clostridium novyi NT]
 gi|118135227|gb|ABK62271.1| ribonuclease G [Clostridium novyi NT]
          Length = 481

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 111/465 (23%), Positives = 207/465 (44%), Gaps = 9/465 (1%)

Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162
             ++     V   +D   E             E       N V +          +    
Sbjct: 7   EREEGILRIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYDKNAY 66

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
            +       + +KN   +LV+I+KE  G KG  VT+ +S+ GRY V++ +  K     + 
Sbjct: 67  MYLNHKFKNDDVKNGDEVLVEIMKESLGEKGPKVTSSISVPGRYVVIVTHNKKIGFSKKI 126

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
             N   +  +      +  P  +G+++RT     T  +I ++ E L   +  + +    S
Sbjct: 127 EDNDNFKSYI---IDNINKPDDIGIMIRTNALDATIEDINKELEKLYDNYKKIVQEGTYS 183

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
           + P L+Y  G  + R + D+   +  ++IV+ E      K+F++         +  Y   
Sbjct: 184 LKPKLLYNGGGTLGRILNDILTFNTKKVIVNNEDDAEYIKEFVEDKS-DLELEIEVYSGK 242

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
             +F    IE ++ SL   ++ LPS G ++I++TEA+  IDVNSG++T++  I+ TAL T
Sbjct: 243 QSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMYVIDVNSGKNTKQTSIDKTALVT 302

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAA+EIARQ+ +R+L+G+I++DFID+   +  + +   LKE  K+D+ +  +   +  
Sbjct: 303 NLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIMHILKEEFKEDKKKTVIYPFTQL 362

Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
            L++++R+R   ++ E   + C+ C G         +   I   + +    Y   +I + 
Sbjct: 363 NLVQIARKRRGKAISEYIEEDCSMCHGKSKRIKLEYLNKLIKDEITKIDEGYNIKDIYIE 422

Query: 523 THSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIE 566
                   +L      I E E     + +N +       + F +E
Sbjct: 423 IDEIYKKDILGDIIKFIEEIEGMHKSIYVNFISN----LEYFKVE 463



 Score = 63.5 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72
          R+V+  D+ ++E   E E  +   G IY   V  + P+++ AF+D G +++ ++   
Sbjct: 14 RIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYDKNAYMYLN 70


>gi|313903958|ref|ZP_07837338.1| Ribonuclease E [Eubacterium cellulosolvens 6]
 gi|313471107|gb|EFR66429.1| Ribonuclease E [Eubacterium cellulosolvens 6]
          Length = 391

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 148/308 (48%), Gaps = 4/308 (1%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
                ++VQ+ KE    K   +TT ++LAGR+ V            +      + ++  +
Sbjct: 83  HEGNSVIVQVEKEALKQKLPRLTTNINLAGRWLVFTSGRPTMNFSKKL---HEEDRSRLK 139

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                   A  GVI+RT  A   + E++ +++ L    + +     +      +Y E   
Sbjct: 140 ALLKPMYDATFGVIIRTNAAQAGEKELEEEWKQLAGKMEYITTYGPSRTTGTCLYREDPE 199

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY-ARIVRQYEDPHPIFFRSGIEV 353
             R IR      ++ I+    + + E +DF+  + P +  +     +D   +F    +  
Sbjct: 200 WIRMIRQCSFLHLNRIVTDLPEIHAETQDFLHRVDPDHRVKCELYKDDMVELFRIYNLTT 259

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
               L    V L S G+++I QTEA  +IDVN+GR +           TN EAAEE ARQ
Sbjct: 260 LFTELTSKRVWLKSGGFLVIEQTEAFCAIDVNTGRYSGNKDYRSMVRMTNAEAAEESARQ 319

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR L+G I++DFI+M++ ++ + + + +++ +K+D    +V  ++   ++E++R+++R
Sbjct: 320 IRLRQLSGTILIDFINMKDPEDRKELIELMQDFVKRDVVSTKVVDLTALDIMEVTRRKVR 379

Query: 474 SSVLESTT 481
            S+ E  +
Sbjct: 380 RSLAEQHS 387



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 1  MANKMLIDA--SHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56
          M  K++I A  +  +ET V  +   D +  E       ++ + GN+Y+ +V +++ SL A
Sbjct: 1  MEQKIVIAAFPAEGKET-VATVLYEDGKPAEFCLTPAGQRPVLGNVYVGRVEKIQKSLSA 59

Query: 57 AFVDYGGNRHGFLP-----FLEIHPDYYQIPFSDRQALLK 91
          AFV +  + +GFLP        +H     I   +++AL +
Sbjct: 60 AFVRFHEDSNGFLPLTGEELSTLHEGNSVIVQVEKEALKQ 99


>gi|255284205|ref|ZP_05348760.1| cytoplasmic axial filament protein [Bryantella formatexigens DSM
           14469]
 gi|255265230|gb|EET58435.1| cytoplasmic axial filament protein [Bryantella formatexigens DSM
           14469]
          Length = 408

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 168/382 (43%), Gaps = 6/382 (1%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
           D    +++   +        I     +   ++I +A  ++   +      S +  P    
Sbjct: 21  DGRAAELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEIEDGISCYLPLSEKAEPYFTN 80

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
           +    + V      LLVQI +E    K   VT  +S  G+Y VL    ++    ++    
Sbjct: 81  KTNSPRLVA--GDELLVQIAREGVKTKAPTVTANISFPGKYLVLTSGKTQTGISAKLAKA 138

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               +   +   G       G ILRT  A   + EI R+ E L + ++++   A      
Sbjct: 139 E---RERLQQIAGRLPEGNFGWILRTNAAEAEEEEILREAETLAKRFEDICRTARYRTCK 195

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHP 344
             +Y         ++D+   +  EI+   +  Y   + ++   +P+ A ++    +   P
Sbjct: 196 SCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYDRLQAYLAENLPADAEKLSFYEDRLLP 255

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           ++    +E   +   +  V L S  Y++I  TEAL +IDVN+G+  R     +T  + NL
Sbjct: 256 LYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEALTAIDVNTGKCERGKKASETFRKINL 315

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA E ARQ+RLR+L+G+I++DFI+M+ K+  + +   L   L+KD  +     I+  GL
Sbjct: 316 EAAREAARQIRLRNLSGIILIDFINMDSKEEEQRLLAALDAELQKDPVKAYAVDITPLGL 375

Query: 465 LEMSRQRIRSSVLESTTKVCTY 486
            E++R+R++  + E   +    
Sbjct: 376 AEVTRKRVQKPLAEKMRQSVPQ 397



 Score = 65.0 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 13/67 (19%)

Query: 1  MANKMLIDASHVEETRV------VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54
          M NK++I       TR+       +  D R  EL F+ E +  + GNIY+ KV  V  ++
Sbjct: 1  MKNKLII-------TRLWDGIATALYLDGRAAELSFDRETETPLPGNIYIGKVKNVVKNI 53

Query: 55 QAAFVDY 61
          QAAFV+ 
Sbjct: 54 QAAFVEI 60


>gi|331270037|ref|YP_004396529.1| ribonuclease G [Clostridium botulinum BKT015925]
 gi|329126587|gb|AEB76532.1| ribonuclease G [Clostridium botulinum BKT015925]
          Length = 484

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/475 (23%), Positives = 217/475 (45%), Gaps = 19/475 (4%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + +D    +  I  + S      I     +    +I  A  D+  N    
Sbjct: 10  EREEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFIDIGCNKNA- 68

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +       + +KN   +LV+I+KE  G KG  VT+ +S+ GRY V++ N
Sbjct: 69  ---------YMYLHHKFKNDDVKNGDEVLVEIMKEAIGEKGPKVTSSISVPGRYIVIVTN 119

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +K     +   N   +  +K+     E    +G+++RT     T  +I  + + L +++
Sbjct: 120 NNKISFSKKIEDNDNFKCYIKDNINKPE---DIGIMIRTNALDATIEDINTEIQKLYKIY 176

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
            N+ +     + P L+Y+ G  + R + D+   +  +++V+ ++     + F++      
Sbjct: 177 KNIVQEGTYCLKPKLLYDCGGTLGRILNDILTFNTRKVVVNNKEDLIYIEKFIEDKS-DL 235

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ YE    +F    IE ++ SL   +V LPS G +II++TEA+  +DVNSG++T+E
Sbjct: 236 DLELQLYEGTQNLFSYHNIEREILSLRNNKVMLPSGGNIIIDKTEAMYVVDVNSGKNTKE 295

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             I+ TAL TNLEAA EIARQ+ +R+L+G+I++DFID+ +    + +   LK+  K+D+ 
Sbjct: 296 TSIDKTALVTNLEAAREIARQIMMRNLSGIIIIDFIDIHDYDYKKKILHILKDEFKEDKK 355

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +   L++++R+R   ++ E   + C  C G       S +   I   +++   
Sbjct: 356 KTVIYPFTQLNLVQIARKRRGKAISEYIEEECNMCHGKAKRIKLSYLNKLIKNELKKIDN 415

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV-SINVVIGIELADKLFYIE 566
            Y   +I +         +L      I + E       +N +       + F +E
Sbjct: 416 DYNISDIYIELDEKYKKDVLGDVIKFIEDIEGLHKKIYVNFISN----LEYFKVE 466



 Score = 65.0 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 139/460 (30%), Gaps = 47/460 (10%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           + I+    E  R+V+  D+ ++E   E E  +   G IY   V  + P+++ AF+D G N
Sbjct: 7   IYIER-EEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFIDIGCN 65

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
           ++ ++                               +   DDV +GD  +          
Sbjct: 66  KNAYMYLH---------------------------HKFKNDDVKNGDEVLVEIMKEAIGE 98

Query: 125 PIANFSQETEEES-----IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179
                +            + + N    S   +        +     +   I  +I+   +
Sbjct: 99  KGPKVTSSISVPGRYIVIVTNNNKISFSKKIEDNDNFKCYIKDNINKPEDIGIMIRTNAL 158

Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN--TSKGETISRKITNPVDRKNLKEIAR 237
                       K   +   +   G Y  L P      G T+ R + + +     K +  
Sbjct: 159 DATIEDINTEIQKLYKIYKNIVQEGTYC-LKPKLLYDCGGTLGRILNDILTFNTRKVVVN 217

Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297
             E    +   +        ++++    + L    +  RE+        ++   GN+I  
Sbjct: 218 NKEDLIYIEKFIEDKSDLDLELQLYEGTQNLFSYHNIEREILSLRNNKVMLPSGGNIIID 277

Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED-------PHPIFFRSG 350
               +Y  D++    + E    +      L             +                
Sbjct: 278 KTEAMYVVDVNSGKNTKETSIDKTALVTNLEAAREIARQIMMRNLSGIIIIDFIDIHDYD 337

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
            + ++  + + E     +  VI   T+  +   V   R  R   I +   +         
Sbjct: 338 YKKKILHILKDEFKEDKKKTVIYPFTQLNL---VQIARKRRGKAISEYIEE-ECNMCHGK 393

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
           A++++L  L  LI  +   ++   N   +  +L E  KKD
Sbjct: 394 AKRIKLSYLNKLIKNELKKIDNDYNISDIYIELDEKYKKD 433


>gi|116872972|ref|YP_849753.1| ribonuclease [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741850|emb|CAK20974.1| ribonuclease, Rne/Rng family [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 453

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 167/397 (42%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   ++  L   G   + +       +IS++I +        + 
Sbjct: 80  QGAKIPVQIVREGSATKLPLLSAVLEFPGDLLIYLHGKEY-VSISKRIADKEP----LKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
              L +     VI+R+   + +  +++         +  + + A     P L      L+
Sbjct: 135 IMELLLDENEAVIIRSNAENSSNEQLEIALNQAREKYQLLIKDAATRKKPGL------LL 188

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A              S  +   +  +F K L   +       +    +F   GI+ Q+
Sbjct: 189 SAASGVFTSAKQFIQRYSPTEIMTDDFEFAKTLEVHFPNREIVLKKSSDLFADIGIKSQI 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           + L +  V LP+   + I +TEA+  IDVNS R       E T    N++A  EI R +R
Sbjct: 249 ERLSRPVVHLPNGSSLFIEKTEAMWVIDVNSSRFKGTAAKEKTVESVNIKAVPEIFRHIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +  +  + + ++   +++    Q+ A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMIIVDFIGGMSEAGHEELYEAIERQSREEYTTTQIAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533
            LE TT  C  C G G++ S+ ++A  + R +   ++Q   ++I + T  DV      LN
Sbjct: 369 FLEFTTIPCPVCYGTGHVASKDTLAFQLEREL-AGIMQGEPNSIQIITTEDVLDAFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TFNHAPIDWE---------VADERI--PFYQIARVEN 453



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I+A+H+ E RV VL D+ + +++     +K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKLIINAAHI-EKRVAVLEDDTLIDMEIIRPSEKVQVGDIFYGFIQKIDRKMDAAFVDLG 60

Query: 63 GNRHGFLPFLEI 74
              GF+   +I
Sbjct: 61 NQNKGFIHLKDI 72


>gi|325263967|ref|ZP_08130700.1| ribonucleases G and E [Clostridium sp. D5]
 gi|324031005|gb|EGB92287.1| ribonucleases G and E [Clostridium sp. D5]
          Length = 398

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 172/392 (43%), Gaps = 6/392 (1%)

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
            ++        E       H D           +  I     +    +I +A  ++ S V
Sbjct: 10  KEDEKAWIFLLEDDEIVEIHCDKADAAGAERHVLGNIYVGRVKNIVPNIGAAFIEIESGV 69

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           E     S         +       I     L+VQI KE    K   V++ LS  GRY++L
Sbjct: 70  ECYYDMSQAANALFTHKAGRKPLCI--GDELVVQISKEAVKTKAPTVSSNLSFTGRYAIL 127

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
               ++  T  +      +   LKE     +     G+I+RT        +I  + + L 
Sbjct: 128 TTGNTRIGTSGKLPKAQREE--LKERLLPYKNE-EYGLIIRTNAGDAEFDQILEEIKSLE 184

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + +  +++ A        + +        ++++Y + ++EII+  E+ Y + +++ K   
Sbjct: 185 QNYSVLKKTAGTRTCFTCLQQAPPAYISDLKNVYTEGLTEIIIEDEELYGQVREYYKKEQ 244

Query: 330 P-SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           P    ++   ++    +         L+      V L +  Y++I  TEAL  IDVNSG+
Sbjct: 245 PFELDKLRLYHDGQLSLAKLYNTHTVLERALSERVWLKTGAYLVIQYTEALTVIDVNSGK 304

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
              +    +T L+ NLEAA E+A+Q+RLR+L+G+I+VDFI++++    R + K  ++ L 
Sbjct: 305 CNAKKNPLETYLKINLEAAREVAKQMRLRNLSGIIIVDFINLDDADATRELLKTFRQHLS 364

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           KD  +  +  ++   L+E++R+++R  + ES 
Sbjct: 365 KDPIQATLVDVTELQLVELTRKKVRRPLYESI 396



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 19 VLRDNRVEELDFESEH----KKQIKGNIYLAKVTRVEPSLQAAFVDY 61
          +L D+ + E+  +       ++ + GNIY+ +V  + P++ AAF++ 
Sbjct: 19 LLEDDEIVEIHCDKADAAGAERHVLGNIYVGRVKNIVPNIGAAFIEI 65


>gi|253681721|ref|ZP_04862518.1| ribonuclease G [Clostridium botulinum D str. 1873]
 gi|253561433|gb|EES90885.1| ribonuclease G [Clostridium botulinum D str. 1873]
          Length = 481

 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 117/475 (24%), Positives = 218/475 (45%), Gaps = 19/475 (4%)

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152
               +     + +D    +  I  + S      I     +    +I  A  D+  N    
Sbjct: 7   EREEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFIDIGCNKNA- 65

Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212
                      +       + +KN   +LV+I+KE  G KG  VT+ +S+ GRY V++ N
Sbjct: 66  ---------YMYLHHKFKNDDLKNGDEVLVEIMKEAIGEKGPKVTSSISVPGRYVVIVTN 116

Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272
            +K     +   N   +  +K+     E    +G+++RT     T  +I  + E L   +
Sbjct: 117 NNKISFSKKIEDNDNFKCYIKDNVNKPE---DIGIMIRTNALDATIEDINTEIEKLYETY 173

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
             + +     + P L+Y+ G  + R + D+   +  +++++ E+  +  K F++      
Sbjct: 174 KKIVQEGTYCLKPKLLYDGGGTLGRILNDILTFNTKKVVLNNEQDLKYIKKFIEDKS-DL 232

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
              ++ YE    +F    IE ++ SL   +V LPS G +II++TEA+  IDVNSG++T+E
Sbjct: 233 DLELQLYEGTQNLFSYYNIEREILSLRNNKVMLPSGGNIIIDKTEAMYVIDVNSGKNTKE 292

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             I+ TAL TNLEAA EIARQ+ +R+L+G+I++DFID+ +    + +   LK+  K+D+ 
Sbjct: 293 TSIDKTALVTNLEAAREIARQIMMRNLSGIIIIDFIDIHDYDYKKKILHILKDEFKEDKK 352

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           +  +   +   L++++R+R   ++ E   + CT C G       S +   I   +++   
Sbjct: 353 KTVIYPFTQLNLVQIARKRRGKAISEYIEEECTMCNGKAKRIKLSYINKLIRNELKKIDN 412

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-ARFGVSINVVIGIELADKLFYIE 566
            Y   +I +         +L      I + E  R  + +N +       + F +E
Sbjct: 413 DYNISDIYIELDEKYKKDVLGDVIKFIKDIEGLRKKIYVNFISN----LEYFKVE 463



 Score = 63.8 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M   + I+    E  R+V+  D+ ++E   E E  +   G IY   V  + P+++ AF+D
Sbjct: 1  MET-IYIER-EEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFID 58

Query: 61 YGGNRHGFLPFL 72
           G N++ ++   
Sbjct: 59 IGCNKNAYMYLH 70


>gi|311031488|ref|ZP_07709578.1| ribonuclease, Rne/Rng family [Bacillus sp. m3-13]
          Length = 223

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 102/159 (64%)

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           +E +L+   +  V LPS GY+II  TEA+  IDVN+G+   +  +++T L+TNLEAA EI
Sbjct: 1   MEQELEKALKRIVWLPSGGYIIIEHTEAMTVIDVNTGKYIGKTGLQETVLKTNLEAAGEI 60

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQLRLR++ G+I+VDFIDM        V +K+K++ +KDR+ V+V   +   LL+++R+
Sbjct: 61  ARQLRLREIGGIIIVDFIDMASDGEREQVLRKVKDAARKDRSHVRVIGFTELNLLQLTRK 120

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509
           ++R  + +   + C+ C G G + S  +V   + R + E
Sbjct: 121 KVREPLTKMLLQPCSPCDGKGVVFSLDTVTYQLERELLE 159


>gi|315303305|ref|ZP_07873938.1| ribonuclease [Listeria ivanovii FSL F6-596]
 gi|313628320|gb|EFR96820.1| ribonuclease [Listeria ivanovii FSL F6-596]
          Length = 454

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 92/399 (23%), Positives = 167/399 (41%), Gaps = 26/399 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               L VQI++E    K   +T  L+  G   V +    +  +IS++I +      LK+ 
Sbjct: 80  QGAKLPVQIIREGSVTKLPLLTAELTFPGDLLVYL-YGKEYISISKRIMDKE---PLKKT 135

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
              L +     VI+R++    TK +++         ++ V   +     P        L+
Sbjct: 136 I-ELLLGKNEAVIIRSSAEKATKEQLETALNEAREEYEQVILKSNKRKKP-------GLL 187

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A   ++      I                 ++ S             +F    I+ Q+
Sbjct: 188 LSAAYGVFASTKQFIQRYQPDEIITDDFDFARVLESNWSDQVTLTKSADLFADLSIKKQI 247

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  IDVNSGR       E T    N +A  EI +Q+R
Sbjct: 248 DRLSRPVVHLSNGSSLFIEKTEAMWVIDVNSGRYKGSTEKEKTVELINQKAVPEILKQIR 307

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     + + L+   +++    Q+ A+S  GLL+++R++ + S
Sbjct: 308 LRNMSGMILVDFIGGMSESGYTELYEVLERQTREEYITTQIAALSQSGLLQLTRRKKQQS 367

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533
            LE+TT  C  C G G++ S+ ++A  + R +   ++Q    +I + T  DV+     LN
Sbjct: 368 FLEATTIPCPTCYGTGHVASKETLAYQLEREL-SGIMQGEPESIQIITTEDVLDTFLDLN 426

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
                 V++E         V    +    + I +     
Sbjct: 427 TLNDAPVDWE---------VADERI--PFYQILRVEKQN 454



 Score = 73.5 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I A+++ E R+ VL D ++ +++      K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKVVISAAYI-EKRIAVLEDEQMIDMEVIRPSNKIQVGDIFYGFIQKIDRKINAAFVDLG 60

Query: 63 GNRHGFLPFLEIHPDYY 79
              GF+   +I PD+Y
Sbjct: 61 NQNKGFIHLKDI-PDFY 76


>gi|330952676|gb|EGH52936.1| ribonuclease E [Pseudomonas syringae Cit 7]
          Length = 332

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 142/325 (43%), Positives = 201/325 (61%), Gaps = 4/325 (1%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  S       +K
Sbjct: 9   EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213
             S E   K  + +  I++V+   Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN 
Sbjct: 69  EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
            +   ISR+I        L+E   GL  PA MG+I+RTAG  R+  E++ D +YL++LW 
Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            ++E +L+  AP L+Y+E N+I RAIRD   +DI E+++   +   EA  F++ +MP YA
Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             ++ YED  P+F R  IE Q+++  Q  V LPS G ++I+ TEALVSID+NS R+T+  
Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307

Query: 394 CIEDTALQTNLEAAEEIARQLRLRD 418
            IE+TALQTNLEAAEEIARQLRLRD
Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRD 332



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 61/103 (59%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1   MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65  RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107
           RHGFLP  EI  +Y++     R  +    +  Q     V  + 
Sbjct: 61  RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103


>gi|259157208|gb|ACV96815.1| hypothetical protein [uncultured bacterium]
          Length = 223

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 98/223 (43%), Positives = 147/223 (65%), Gaps = 1/223 (0%)

Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
           LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ W+ +++ A +  AP L+++E
Sbjct: 1   LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQE 60

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHPIFFRSG 350
            N+I RA RD   +DI EI++   K    A+  +  L  P ++  ++ Y    P+F    
Sbjct: 61  SNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQ 120

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+TR   IE+TA  TNLEAA+EI
Sbjct: 121 IESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEI 180

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
           ARQLRLRDL GLIV+DFIDM   ++ R+ E +L+E++++D AR
Sbjct: 181 ARQLRLRDLGGLIVIDFIDMTPVRHPRAGENRLREAVRQDPAR 223


>gi|325661210|ref|ZP_08149837.1| hypothetical protein HMPREF0490_00570 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472717|gb|EGC75928.1| hypothetical protein HMPREF0490_00570 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 401

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 172/395 (43%), Gaps = 5/395 (1%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           ++ L+      Q  +  + ++          D     V  I     +    +I +A  ++
Sbjct: 2   KRKLVITKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFIEI 61

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
            + VE          P   ++       I     LLVQI KE    K   VT+ LS  G+
Sbjct: 62  ANGVECYYSIPQNPSPHFTQKVGKKPLCI--GDELLVQIQKEAVKTKVPTVTSNLSFTGK 119

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VL     K    S+      +++   + A  +      G I+RT         +K + 
Sbjct: 120 YVVLTSGIKKIGISSKITG---EKRTQIQEAVEVLQSERYGFIVRTNAKDIPADLVKEEL 176

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             L   + ++ E+A +      + E        IRD+Y + +++I+V         +   
Sbjct: 177 GQLAESYMHLVEIAQSRKVFSCLLEAPFTYLSNIRDIYQEGLTDIVVEESLFEDVKQYLE 236

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           K       ++V   +   P++    +E  +       V + S  Y++I  TEAL  IDVN
Sbjct: 237 KEQPEDLEKLVCYADRQLPLYKLYSLESVISRALSERVWMKSGAYLVIQPTEALTVIDVN 296

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           +G+       ++  ++ NLEAA+E A+Q+RLR+L+G+I++DFI+++ K+  + + +  ++
Sbjct: 297 TGKCIAGKKDDEVYMKINLEAAKEAAKQIRLRNLSGIILIDFINLKSKECTKDLLEVFQK 356

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
            L+KD  +  +  ++   L+E++R+++R  + E  
Sbjct: 357 ELRKDPVQTILVDMTGLQLVEVTRKKVRKPLREVV 391



 Score = 73.1 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 16/86 (18%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK-QIKGNIYLAKVTRVEPSLQAAFV 59
          M  K++I     E+    VL +  V E+    +  +    GNIY+ KV  + P++QAAF+
Sbjct: 1  MKRKLVI-TKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFI 59

Query: 60 DY--GGNRHGFLPFLEIHPDYYQIPF 83
          +   G               YY IP 
Sbjct: 60 EIANGVE------------CYYSIPQ 73


>gi|218132496|ref|ZP_03461300.1| hypothetical protein BACPEC_00355 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992606|gb|EEC58608.1| hypothetical protein BACPEC_00355 [Bacteroides pectinophilus ATCC
           43243]
          Length = 418

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 157/376 (41%), Gaps = 29/376 (7%)

Query: 128 NFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKE 187
                    + I                    +  K   + CI        ++LVQ+ +E
Sbjct: 44  ENVVNNINAAFIEYARGKKGYYSLTDNEHHIFLNPKNNDRMCI------GDLVLVQVSRE 97

Query: 188 ERGNKGAAVTTYLSLAGRYSVLMPNT---SKGETISRKITNPVDRKNLKEIARGLEVP-- 242
               K   +T  + + GRY  L  +    +    IS+KIT+   R  LK I +       
Sbjct: 98  GVKTKEPTLTGRIGITGRYCALTLDCKSENSSVFISKKITDEDRRSYLKGIVKDAMNNAL 157

Query: 243 ----------------AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286
                               +I+RT      +  +  +   ++    ++ + A+      
Sbjct: 158 NAYTASSVNSIPTASDMHFNIIVRTNAEDAPEEPVTAEVSRIVTTMCDILKDAVTRKGLT 217

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPI 345
            +Y         ++++   ++ +II    + Y   + ++    P  A ++    +   P+
Sbjct: 218 RMYSPEESCLEDVQNMRATNLEKIITDIPEVYDSVRRYLGENEPGEAAKLEFYDDMQLPL 277

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNL 404
                +E Q+ +     V LPS GY++I  TEAL  IDVNSG+ T    ++D T L+ N+
Sbjct: 278 NKLYSVESQISTALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTGNRKLKDNTYLKINM 337

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           EAA EI RQL LR+L+G+IVVDFI++   +  + +   L + LK D     V  ++  GL
Sbjct: 338 EAAVEIGRQLMLRNLSGIIVVDFINLNTFEEKKELMSYLADILKADTVPTSVVDMTRLGL 397

Query: 465 LEMSRQRIRSSVLEST 480
           +E++R++IR  + E  
Sbjct: 398 VEITRKKIRKPLHEVI 413



 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 34 HKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
            + I GNIY+ +V  V  ++ AAF++Y   + G+    +
Sbjct: 30 EDESILGNIYVGRVENVVNNINAAFIEYARGKKGYYSLTD 69


>gi|331085033|ref|ZP_08334120.1| hypothetical protein HMPREF0987_00423 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408733|gb|EGG88198.1| hypothetical protein HMPREF0987_00423 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 401

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 171/395 (43%), Gaps = 5/395 (1%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           ++ L+      Q  +  + ++          D     V  I     +    +I +A  ++
Sbjct: 2   KRKLVITKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFIEI 61

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
            + VE          P   ++       I     LLVQI KE    K   VT+ LS  G+
Sbjct: 62  ANGVECYYSIPQNPSPHFTQKVGKKPLCI--GDELLVQIQKEAVKTKVPTVTSNLSFTGK 119

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VL     K    S+      +++   +    +      G I+RT         +K + 
Sbjct: 120 YVVLTSGIKKIGISSKITG---EKRAQIQETVEVLRSERYGFIVRTNAKDIPADLVKEEL 176

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
             L   + ++ E+A +      + E        IRD+Y + +++I+V         +   
Sbjct: 177 GQLAESYMHLVEIAQSRKVFSCLLEAPFTYLSNIRDIYQEGLTDIVVEESLFEDVKQYLA 236

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           K       ++V   +   P++    +E  +       V + S  Y++I  TEAL  IDVN
Sbjct: 237 KEQPEDLEKLVCYADRQLPLYKLYSLESVISRALSERVWMKSGAYLVIQPTEALTVIDVN 296

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           +G+       ++  ++ NLEAA+E A+Q+RLR+L+G+I++DFI+++ K+  + + +  ++
Sbjct: 297 TGKCIAGKKDDEVYMKINLEAAKEAAKQIRLRNLSGIILIDFINLKSKECTKDLLEVFQK 356

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
            L+KD  +  +  ++   L+E++R+++R  + E  
Sbjct: 357 ELRKDPVQTILVDMTGLQLVEVTRKKVRKPLREVV 391



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 16/86 (18%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK-QIKGNIYLAKVTRVEPSLQAAFV 59
          M  K++I     E+    VL +  V E+    +  +    GNIY+ KV  + P++QAAF+
Sbjct: 1  MKRKLVI-TKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFI 59

Query: 60 DY--GGNRHGFLPFLEIHPDYYQIPF 83
          +   G               YY IP 
Sbjct: 60 EIANGVE------------CYYSIPQ 73


>gi|3786341|gb|AAC70893.1| cytoplasmic axial filament protein [Aggregatibacter
           actinomycetemcomitans]
          Length = 243

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 7/243 (2%)

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
             +P+    +  Y    P+F    +E  + +     V L S GY+II QTEA+ +ID+N+
Sbjct: 1   EFIPNLTDKLILYAGNQPLFDVYSVETGIHNALDKRVNLKSGGYLIIEQTEAMTTIDINT 60

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL--K 444
           G       +E+T   TN+EA + IA+QL+LR+L G+I++DFIDM+++++   V   L   
Sbjct: 61  GAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQKEEHRTRVFGILAGS 120

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE-STTKVCTYCKGAGYIRSQSSVALSI 503
              +    + Q       G    +  +     LE      C  C+G G +++  +V   I
Sbjct: 121 PCRRPGENQCQWFHSVGAG---GNDPQTHPRNLERVLCGDCPACQGRGRVKTVETVCYEI 177

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKL 562
           +R +      + +   +V+    V  YL+N++    + E E   G  I V   +    + 
Sbjct: 178 MREIIRVHHVFASEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQVKTEVFYTQEQ 237

Query: 563 FYI 565
           F +
Sbjct: 238 FDV 240


>gi|160892676|ref|ZP_02073466.1| hypothetical protein CLOL250_00206 [Clostridium sp. L2-50]
 gi|156865717|gb|EDO59148.1| hypothetical protein CLOL250_00206 [Clostridium sp. L2-50]
          Length = 388

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 3/308 (0%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    +LVQ+ K+    K    T+ + L     ++  NTS    IS KI     R +L  
Sbjct: 84  KAGDEILVQVSKDAIKTKNPVATSEIELKTENLLV--NTSGRIGISGKIRKKETRDHL-H 140

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                 +P G G ILRT         I  D   L +    + + A        +Y+    
Sbjct: 141 QLAKRVLPDGFGCILRTVCQELPDETILSDLSELSKQLKQIIQTAKTRTCYSCLYKNDAE 200

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
                   +   + EI+   +  + E   ++     +  ++    +    +     +   
Sbjct: 201 YLDYFILKHNAGLQEIVTDQKLVFDEFAMYLSEKQITDVKLTMYNDKNCNLLTLYNLPRD 260

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           L++L +  V + S  Y++I QTEA+V IDVN+G+S  +H  E+  L+ N EAA E+ RQL
Sbjct: 261 LENLKKERVWMKSGAYLVIEQTEAMVVIDVNTGKSVDKHSFEEHLLRINSEAAVEVCRQL 320

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR+L+G+IVVDFI+M++  +   ++  L++ L KD        ++   L+E++R++IR 
Sbjct: 321 RLRNLSGIIVVDFINMKQPGSMDVIKDILEQELAKDSVPAAFVDVTKLSLVELTRKKIRK 380

Query: 475 SVLESTTK 482
           S+ E  TK
Sbjct: 381 SLKEQLTK 388



 Score = 57.3 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)

Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG----------NRHG 67
           V  D ++ +L      ++ I  NIY+ KV  +  ++ AAFVD G           N+H 
Sbjct: 16 AVYSDGKLSDLML--FDRQSILSNIYVGKVENIVANIDAAFVDIGTGLPCYYSISDNKHI 73

Query: 68 FL 69
          FL
Sbjct: 74 FL 75


>gi|218677995|ref|ZP_03525892.1| ribonuclease, Rne/Rng family protein [Rhizobium etli CIAT 894]
          Length = 397

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 207/341 (60%), Positives = 244/341 (71%), Gaps = 1/341 (0%)

Query: 91  KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
            E   +  + +  +   T   +   ++ S +          + +++             E
Sbjct: 58  AEGASSVDNEDDGSTGGTMAAMVETDEISEDIDTNKRRHDDDDDDDDHGEEEVIESVGAE 117

Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
           D     P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLM
Sbjct: 118 DAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLM 177

Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
           PNT++G  ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMR
Sbjct: 178 PNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMR 237

Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330
           LW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE+GYREAKDFMK+LMP
Sbjct: 238 LWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLMP 297

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
           S+A++V+ Y D HPIF RSGIE QLD + Q  VTL S GY+I+NQTEALVSIDVNS    
Sbjct: 298 SHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPHVTLRSGGYLIMNQTEALVSIDVNSRPLD 357

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431
                   ALQTNLEAAEEIA     R LAGLIV+DFIDME
Sbjct: 358 ARALDRGHALQTNLEAAEEIAAASPAR-LAGLIVIDFIDME 397


>gi|307243123|ref|ZP_07525297.1| ribonuclease, Rne/Rng family [Peptostreptococcus stomatis DSM
           17678]
 gi|306493483|gb|EFM65462.1| ribonuclease, Rne/Rng family [Peptostreptococcus stomatis DSM
           17678]
          Length = 466

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 98/390 (25%), Positives = 175/390 (44%), Gaps = 16/390 (4%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
             ILLVQ+ K  +G+K  ++T  +S+ GRY V +P+  +    ++   +     +LK   
Sbjct: 78  GDILLVQVSKSGKGDKRVSLTREVSIQGRYMVYIPSNDRLSYSNKLSKDQ--VSDLKAKI 135

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
             L++ A  G+I+RT         +K DF+ L   +  + E+  +S+ P LV +    I+
Sbjct: 136 GKLDIGASTGLIVRTEAQFADLDGLKNDFDSLKEAYARLEEVFRSSLNPGLVKKAKGEIE 195

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ-----------YEDPHPI 345
             I     KD+  II   +      +D    +     R + +            +     
Sbjct: 196 SFIAYNLDKDLEAIIYPEDMDDESDRDKSNHIDKFDIRALVKSLDRAYLEKLVRDKNPAT 255

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
           F   G+  +L+      + L +  Y++I++TEA+  IDVNSGR        +T L  N+ 
Sbjct: 256 FSNYGVNARLNHYLSNRIRLRNGSYIVIDKTEAMTVIDVNSGRYIGSANYANTVLDVNMG 315

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
             +EIA Q+ +RDL+G+I+VDFIDM+ +++   +  K+K SL  D    +V   +  GLL
Sbjct: 316 LVDEIAMQILMRDLSGIIIVDFIDMKSERDREDLIAKMKMSLGADGKNTKVHGFTRLGLL 375

Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHT 523
           E+SR+R      ES              R    V   ++  +   L++       +++  
Sbjct: 376 EISRRR-SQDSFESYYYNQESRDYYSANRLVDMVEERVIGQIYHSLIKNGEDKKTLLIEM 434

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVV 553
             D    L+  K+  + E E ++G+ +   
Sbjct: 435 EVDKYKRLIANKKDVLKEIEDKYGLDMEFK 464


>gi|238916950|ref|YP_002930467.1| ribonuclease G [Eubacterium eligens ATCC 27750]
 gi|238872310|gb|ACR72020.1| ribonuclease G [Eubacterium eligens ATCC 27750]
          Length = 409

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 100/457 (21%), Positives = 180/457 (39%), Gaps = 80/457 (17%)

Query: 28  LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQ 87
              +      + GNIY+ +V  V  ++ AAF++            +    YY I      
Sbjct: 26  HYLKPLDSGSVVGNIYVGRVENVVKNINAAFIEI----------EDKQKCYYSI------ 69

Query: 88  ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147
              +++      +E     +  GD  +    +       A  S + E     +  ++ V 
Sbjct: 70  ---QDNKAPIFFNEKNNPAICQGDRILVKVTTEPLKTKPAKVSSKIELTGNYAVVSNDVK 126

Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207
            V   K     +   + K++                     +  + A   T         
Sbjct: 127 GVHISKKIKSNETISEIKKRV---------------ADILIQKQREAIEKTGYDYLS--- 168

Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267
                                                 G+ILR+  A     +I +D + 
Sbjct: 169 ------------------------------------NFGIILRSGCADADTDDIIKDVKA 192

Query: 268 LMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327
           L   + ++   A+ S    LV+++       I  L  KD  E+I      Y E + ++  
Sbjct: 193 LCNEYTDMLRKAVFSKFYTLVHKDRPEYIEEIVHLSGKDRVEVITDIPDIYNELETYLPR 252

Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
                  I    ++  P++    IE ++D+    +V L S GY+II QTEAL  IDVNSG
Sbjct: 253 SS--NMSIRMYKDELWPLYKLYSIEKEIDTALSKKVWLKSGGYLIIEQTEALSVIDVNSG 310

Query: 388 RSTREHCIEDT----ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           ++  +    +     AL+TNLEAA+++ +Q+++R+L+G+I+VDFI+M  ++N   + + L
Sbjct: 311 KNVTKAKSMEAIEASALKTNLEAADKLCQQIKVRNLSGIIIVDFINM-NQRNCDILMEHL 369

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           K   KKD     +  I+  GL+E++R++I  S+ ES 
Sbjct: 370 KFLAKKDIVNTTIVDITKLGLVEITRKKIGKSLSESL 406


>gi|229824795|ref|ZP_04450864.1| hypothetical protein GCWU000182_00144 [Abiotrophia defectiva ATCC
           49176]
 gi|229791124|gb|EEP27238.1| hypothetical protein GCWU000182_00144 [Abiotrophia defectiva ATCC
           49176]
          Length = 406

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 155/390 (39%), Gaps = 16/390 (4%)

Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160
            A+ DD    +  I      E    I +      E  + + N   V     ++   P   
Sbjct: 15  SALTDDFDIKEFKISESTDGEVSFNIGDIVVGRVENIVKNINACFVEIFPGIQAYLP--- 71

Query: 161 PKKFKRQYCIQEVIKNRQI------LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214
                    I    K          +LVQI K     K  ++TT  +  G+Y+VL PN  
Sbjct: 72  --LTPDMKIIYVNGKPGGTPVIDDLILVQIAKLPTKTKSYSLTTDFTFIGKYAVLKPNLD 129

Query: 215 KGETISRKITNPVDRKNLKEIA---RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           K    S+        +                G G ++R +  + +  E++     L   
Sbjct: 130 KIHLSSKYREEADFTEIKSRFMSVGEKFATETGAGGVIRKSALNLSDKELEDTLYDLYVK 189

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331
           + ++     + V    +++E       IRD   K    +    E      +   +     
Sbjct: 190 FVSIINRGKHGVKYERIFKEIPEHLSLIRDNCEKIEKIMTDDEETYNEYKEYLKEFSEKD 249

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
             ++    ++   +     I   L+      V L S  Y++I  TEAL  IDVNSG++  
Sbjct: 250 IKKLFFYKDEMMSLSALYSINTTLEKALSKRVWLKSGAYIVIEYTEALTIIDVNSGKAIT 309

Query: 392 EHCIE-DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450
                 +T ++ NLEAA EIA QLRLR+L+G+I+VDFI++ + +  + +   +++ LK+D
Sbjct: 310 GKSTNTETFMKINLEAAREIADQLRLRNLSGIIIVDFIEIPKSRG-KELINAMEDFLKED 368

Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLEST 480
             +  V  I+  GL+E++R+R    + E  
Sbjct: 369 STKSNVADITKLGLMELTRRRTGKPIYEIL 398



 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 18 VVLRDNRVEELDF-ESEHKK--QIKGNIYLAKVTRVEPSLQAAFVDY 61
           +  D  ++E    ES   +     G+I + +V  +  ++ A FV+ 
Sbjct: 16 ALTDDFDIKEFKISESTDGEVSFNIGDIVVGRVENIVKNINACFVEI 62


>gi|289612665|emb|CBI60059.1| unnamed protein product [Sordaria macrospora]
          Length = 175

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 102/195 (52%), Positives = 133/195 (68%), Gaps = 20/195 (10%)

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           M+LLMP++AR V+QY D  P+F R+ +E QL +++   V L S GY++IN TEALVSID+
Sbjct: 1   MRLLMPAHARRVKQYADAVPLFQRAHVEDQLAAMYNPVVQLKSGGYLVINPTEALVSIDI 60

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           NSGRSTREH IE TA  TNLEAA+EIARQLRLRD+AGL+V+DFIDM+   N         
Sbjct: 61  NSGRSTREHNIEQTATATNLEAAQEIARQLRLRDMAGLVVIDFIDMDHGSN--------- 111

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
                      VG IS FGL+EMSRQR+R+ VLE++T+ C +C+G G +R+ SS  LS L
Sbjct: 112 -----------VGRISAFGLMEMSRQRLRTGVLEASTRQCPHCEGTGLVRTASSAGLSAL 160

Query: 505 RSVEEYLLQYTAHNI 519
           R +E+   +     I
Sbjct: 161 RLIEDEAARGRGSLI 175


>gi|225025975|ref|ZP_03715167.1| hypothetical protein EUBHAL_00212 [Eubacterium hallii DSM 3353]
 gi|224956761|gb|EEG37970.1| hypothetical protein EUBHAL_00212 [Eubacterium hallii DSM 3353]
          Length = 403

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 140/306 (45%), Gaps = 3/306 (0%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
              I+LVQI K+    K    T  +SL G+Y V      +     +        +   E 
Sbjct: 91  GGDIILVQITKDAVKTKLPVGTGNISLDGKYFVFTLTDKRTGISKKIRNTVERER--LET 148

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                     G+I+RT  A  ++  + ++ E L   ++ +   A  +    L+Y E    
Sbjct: 149 LLKKYTREEYGIIVRTNAAGVSEETLTKELELLQLRYEELMRKAKIATGKTLLYREPPHY 208

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
               ++L  K + EI+    + + E K++ K    S    +  YED + ++         
Sbjct: 209 ITLGKELPAKALDEILTDHAEVFTELKEYYKQTSESDTTKISFYEDTYSLYNLYRFAHYY 268

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEEIARQL 414
           +  +   + L S   ++I  TEA+  IDVN+G   ++   EDT   Q N EAA+EIARQL
Sbjct: 269 EEAYGKYIWLKSGASLVIEHTEAMTVIDVNTGSVLKKKKQEDTLFYQINREAAKEIARQL 328

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR+++G+I++DFI+M++      +   L    KKDR    V  ++   L+EM+R ++R 
Sbjct: 329 RLRNISGIIMIDFINMKDTAQKEKLLSLLDSECKKDRVHCNVIDMTALNLVEMTRSKVRK 388

Query: 475 SVLEST 480
            + E  
Sbjct: 389 PLHEQI 394



 Score = 51.1 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/375 (11%), Positives = 104/375 (27%), Gaps = 21/375 (5%)

Query: 22  DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQI 81
           D    EL  E + ++ I GNIY A+V RV   +  AF++ G          +    YY +
Sbjct: 24  DGVPTELYCEPKEQQSILGNIYAARVERVAEGIHGAFLEIG----------DNQKCYYSL 73

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
                  L           + +   +T   V          ++    +   T  +     
Sbjct: 74  SAEQPVKLSPGHEDKLYGGDIILVQITKDAVKTKLPVGTGNISLDGKYFVFTLTDKRTGI 133

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
           +  + + VE  +  +      + +    ++          +    E    +   +     
Sbjct: 134 SKKIRNTVERERLETLLKKYTREEYGIIVRTNAAGVSEETLTKELELLQLRYEELMRKAK 193

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI------ARGLEVPAGMGVILRTAGAS 255
           +A   ++L        T+ +++      + L +        +            + +   
Sbjct: 194 IATGKTLLYREPPHYITLGKELPAKALDEILTDHAEVFTELKEYYKQTSESDTTKISFYE 253

Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
            T      +       ++      +   +   +  E       I       + +      
Sbjct: 254 DTYS--LYNLYRFAHYYEEAYGKYIWLKSGASLVIEHTEAMTVIDVNTGSVLKKKKQEDT 311

Query: 316 KGYREAKDFMKLLMP--SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVII 373
             Y+  ++  K +        I             +  + +L SL  +E     R +  +
Sbjct: 312 LFYQINREAAKEIARQLRLRNISGIIMIDFINMKDTAQKEKLLSLLDSECK-KDRVHCNV 370

Query: 374 NQTEALVSIDVNSGR 388
               AL  +++   +
Sbjct: 371 IDMTALNLVEMTRSK 385


>gi|254992667|ref|ZP_05274857.1| hypothetical ribonuclease G [Listeria monocytogenes FSL J2-064]
          Length = 453

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 97/491 (19%), Positives = 189/491 (38%), Gaps = 49/491 (9%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A +++  +   +    ++ V  GD+       ++     A        +  I  
Sbjct: 10  PIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVDLGNNNKGFIHL 69

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +   S  +                             + VQIV+E    K   +T  L 
Sbjct: 70  KDIPESYDKT------------------------QGAKIPVQIVREGSATKLPLLTGILE 105

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
            +G   V +          R        K   +      V     VI+R+     TK ++
Sbjct: 106 FSGDLLVYLYGKEYISISKRIGD-----KIRLKKITETMVEENEAVIIRSNAEFATKEQL 160

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++           + + A     P L+    + I  + +    +     +++ +  + + 
Sbjct: 161 QQALVQARDKHQTLLKEASKRKKPGLLLSVASGILNSTKQFIQRYAPSEVITDDFEFAKM 220

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            + +      +       +    +F   GI+ Q+D L +  V L +   + I +TEA+  
Sbjct: 221 LEML------WPDKQIIIKKSADLFADLGIKAQIDRLARPVVHLSNGSSLFIEKTEAMWV 274

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSG+       E T    NL+A  EI RQ+RLR+++G+I+VDFI    +    ++ +
Sbjct: 275 VDVNSGKFKGTTAKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIGGMSELGYTALYE 334

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+   +++    QV A+S  GLL+++R++ + S LE+TT  C  C   G++ S+ ++A 
Sbjct: 335 ALEIKTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVCYATGHVASKETLAF 394

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LNQKRATIVEYEARFGVSINVVIGIELA 559
            + R +   ++Q    NI + T  DV+     LN      +++E         V    + 
Sbjct: 395 ELEREL-SGIMQNEPSNIQIITTEDVLDTFLDLNTLSNAPIDWE---------VADERV- 443

Query: 560 DKLFYIEKGSP 570
              + I +   
Sbjct: 444 -PFYQIGRVEN 453



 Score = 73.9 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    L+ ++   E R+  + D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86


>gi|260588584|ref|ZP_05854497.1| ribonucleases G and E [Blautia hansenii DSM 20583]
 gi|331082062|ref|ZP_08331190.1| hypothetical protein HMPREF0992_00114 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541059|gb|EEX21628.1| ribonucleases G and E [Blautia hansenii DSM 20583]
 gi|330405657|gb|EGG85187.1| hypothetical protein HMPREF0992_00114 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 400

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 185/392 (47%), Gaps = 4/392 (1%)

Query: 88  ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147
            L+      +     VA     G +   N  SL   + + N      +    +     + 
Sbjct: 6   KLILTEMNYRNTPILVAALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQAAFIE 65

Query: 148 NVEDVKGGSPEDVP-KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
               +                     V+K    ++VQ+ KE   +K   V++ L+  GRY
Sbjct: 66  IENGIMCYYSMAEKASPCFVNVKKNNVLKIGDEMIVQVSKEGIKSKLPYVSSNLNFTGRY 125

Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            VL     +     +      ++K ++EI +  ++P  +G+I+RT      + EI  + E
Sbjct: 126 LVLTSERKELGFSGKLKK--EEKKQIREILKD-KIPENVGIIVRTNCRDAQEEEILHELE 182

Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
            LM+ ++ V +   + V   ++ +      + +++LY +D+ EI+   ++ Y  A  ++K
Sbjct: 183 ELMKRYEAVLQKGKSRVCFSVLEKSMPEYVQILQNLYSQDLEEIVTDKQELYECAVQYLK 242

Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386
                   +    +   P++    ++   +      V L S G+++I QTEA V IDVN+
Sbjct: 243 GYKQQEKIVRYYEDKLLPLYKLYNLQKAFEQAQNERVWLKSGGFLVIQQTEAFVCIDVNT 302

Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446
           G+ T +  +++T  + NLEAA+EIA QLRLR+L+G+I++DFI++E  ++   + + L++ 
Sbjct: 303 GKCTSKKDMQETFRKINLEAAKEIAWQLRLRNLSGIILIDFINLERAEDKEELMQTLQKY 362

Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           L +D  +  V  ++   ++E++R+++R S+ E
Sbjct: 363 LWQDSIKGTVVDMTELNIVEVTRKKVRKSLAE 394



 Score = 51.5 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 28/44 (63%)

Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
           + ++ R+ +L+  S +   I GNIY+ KV  ++ ++QAAF++ 
Sbjct: 23 ALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQAAFIEI 66


>gi|46907771|ref|YP_014160.1| ribonuclease [Listeria monocytogenes serotype 4b str. F2365]
 gi|226224144|ref|YP_002758251.1| hypothetical ribonuclease G [Listeria monocytogenes Clip81459]
 gi|254824398|ref|ZP_05229399.1| ribonuclease [Listeria monocytogenes FSL J1-194]
 gi|254852167|ref|ZP_05241515.1| ribonuclease [Listeria monocytogenes FSL R2-503]
 gi|254931478|ref|ZP_05264837.1| ribonuclease [Listeria monocytogenes HPB2262]
 gi|255521598|ref|ZP_05388835.1| hypothetical ribonuclease G [Listeria monocytogenes FSL J1-175]
 gi|300764790|ref|ZP_07074780.1| rne/Rng family ribonuclease [Listeria monocytogenes FSL N1-017]
 gi|46881040|gb|AAT04337.1| ribonuclease, Rne/Rng family [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|225876606|emb|CAS05315.1| Putative hypothetical ribonuclease G [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605471|gb|EEW18079.1| ribonuclease [Listeria monocytogenes FSL R2-503]
 gi|293583030|gb|EFF95062.1| ribonuclease [Listeria monocytogenes HPB2262]
 gi|293593633|gb|EFG01394.1| ribonuclease [Listeria monocytogenes FSL J1-194]
 gi|300514466|gb|EFK41523.1| rne/Rng family ribonuclease [Listeria monocytogenes FSL N1-017]
 gi|332311985|gb|EGJ25080.1| Ribonuclease, Rne/Rng family [Listeria monocytogenes str. Scott A]
          Length = 453

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 189/491 (38%), Gaps = 49/491 (9%)

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
           P   R A +++  +   +    ++ V  GD+       ++     A        +  I  
Sbjct: 10  PIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVDLGNNNKGFIHL 69

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +   S  +                             + VQIV+E    K   +T  L 
Sbjct: 70  KDIPESYDKT------------------------QGAKIPVQIVREGSATKLPLLTGILE 105

Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
            +G   + +          R        K   +      V     VI+R+     TK ++
Sbjct: 106 FSGDLLIYLYGKEYISISKRIGD-----KIRLKKITETMVEENEAVIIRSNAEFATKEQL 160

Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
           ++           + + A     P L+    + I  + +    +     +++ +  + + 
Sbjct: 161 QQALVQARDKHQTLLKEASKRKKPGLLLSVASGILNSTKQFIQRYAPSEVITDDFEFAKM 220

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            + +      +       +    +F   GI+ Q+D L +  V L +   + I +TEA+  
Sbjct: 221 LEML------WPDKQIIIKKSADLFADLGIKAQIDRLARPVVHLSNGSSLFIEKTEAMWV 274

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
           +DVNSG+       E T    NL+A  EI RQ+RLR+++G+I+VDFI    +    ++ +
Sbjct: 275 VDVNSGKFKGTTAKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIGGMSELGYTALYE 334

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            L+   +++    QV A+S  GLL+++R++ + S LE+TT  C  C   G++ S+ ++A 
Sbjct: 335 ALEIKTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVCYATGHVASKETLAF 394

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LNQKRATIVEYEARFGVSINVVIGIELA 559
            + R +   ++Q    NI + T  DV+     LN      +++E         V    + 
Sbjct: 395 ELEREL-SGIMQNEPSNIQIITTEDVLDTFLDLNTLSNAPIDWE---------VADERV- 443

Query: 560 DKLFYIEKGSP 570
              + I +   
Sbjct: 444 -PFYQIGRVEN 453



 Score = 73.9 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    L+ ++   E R+  + D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86


>gi|291166408|gb|EFE28454.1| ribonuclease, Rne/Rng family [Filifactor alocis ATCC 35896]
          Length = 450

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 180/393 (45%), Gaps = 18/393 (4%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
            + + +KN  +++ QI KE   +K A +T  ++L+G Y + +P   K   +S KI N   
Sbjct: 69  QVNKDLKNGDVVIAQIKKEPISSKLAKLTDDINLSGEYVIYLP-YGKEIFLSNKIKNDTR 127

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
              L +          +G+I+RT        +++ + E L+ L++ + +     V   L 
Sbjct: 128 SDKLVKKLS--TDFLNIGLIVRTEAIEVDYEQVRDEVERLVDLFNEIMKKKKEGVIGLLY 185

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
            ++       + D +     + I       +E    +K    S             +F  
Sbjct: 186 EQDS------LSDFFHHFRFDTIDEIISNSQEIISKVKDWARSKKMRPEYIFQEIDLFGS 239

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
            GI   L  L   +    +   +II  TEA  ++DVNSG   R   ++D AL+ NL++ +
Sbjct: 240 CGIS--LTKLFSKKYEFGNI-SIIIEPTEAFTAVDVNSGYQERHCYMDDMALEVNLKSCK 296

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            +   +  ++++G+I++DFIDM++      + ++L+E  ++D  +V V  I++ G++++ 
Sbjct: 297 YVVDLIIKKNISGIILIDFIDMKKHGYQEKLLRRLREEFRRDIKKVSVLNITSLGIVQVI 356

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSD 526
           RQR + ++++  +  C  C G+GY++S   +   +   + +YL        NI+V     
Sbjct: 357 RQREKENIMDMISFSCPLCSGSGYLKSPLILLDELEVELRKYLYHRELKKGNILVLAPGY 416

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
           +  Y    +       E+++GVS+N+     + 
Sbjct: 417 MKSYFDKNQS----FLESKYGVSMNIKYEDYMN 445


>gi|315282461|ref|ZP_07870871.1| ribonuclease [Listeria marthii FSL S4-120]
 gi|313613900|gb|EFR87634.1| ribonuclease [Listeria marthii FSL S4-120]
          Length = 453

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 171/397 (43%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   ++  L   G   + +          R      D+  LK+ 
Sbjct: 80  QGAKIPVQIVREGSATKLPLLSGVLEFPGDLLIYLYGKEYISVSKRI----ADKDTLKKT 135

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
              L       +I+R+   + T+ ++++           + + A     P L+    + I
Sbjct: 136 MTALITE-NEALIIRSNAENATEEQLQQALIQAREKHQALLKEATKRKKPGLLLSAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +    +     I++ +       +F K L  ++   +   +    +F   GI+ Q+
Sbjct: 195 FTSAKQFIQRHKPTEIITDD------FEFAKTLEDAWPDQLITLKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSGR       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLTNGSSLFIEKTEAMWVVDVNSGRFKGTTAKEKTVESVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     + + ++   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEAIESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533
            LE TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV+     LN
Sbjct: 369 FLEVTTAPCPVCYATGHVASKETLAFELEREL-AGIMQNEPNSIQIITTEDVLDTFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 IFNNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I A+   E R  V+ ++ + +++     +K   G+I+   + +++  ++AAFVD G
Sbjct: 2  KKLVISAA-PIEKRAAVVENDLLIDIEIVRPSEKVQVGDIFYGFIQKIDRKMEAAFVDLG 60

Query: 63 GNRHGFLPFLEIHPDYY------QIPF 83
           N  GF+   +I PD Y      +IP 
Sbjct: 61 NNNKGFIHLKDI-PDSYDKTQGAKIPV 86


>gi|217964310|ref|YP_002349988.1| ribonuclease, Rne/Rng family [Listeria monocytogenes HCC23]
 gi|217333580|gb|ACK39374.1| ribonuclease, Rne/Rng family [Listeria monocytogenes HCC23]
 gi|307571124|emb|CAR84303.1| ribonuclease, Rne/Rng family [Listeria monocytogenes L99]
          Length = 453

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +    + +          R +      K   + 
Sbjct: 80  QGAKIPVQIVREGSATKLPLLTAVLEFSSDLLIYLYGKEYISVSKRIVE-----KITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++           + + A     P L+    + I
Sbjct: 135 IMETLVEENEALIIRSNAEFATKEQLQQALVQARDKHQALLKEASKRKKPGLLLAAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                               +   +  +F K+L  ++       +    +F   GI+ Q+
Sbjct: 195 LT------NTKQFVERYKPSEIITDDFEFAKMLETTWPDQQITLKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVELVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     + + L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533
            LE TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV      LN
Sbjct: 369 FLEMTTIPCPICYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLDAFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 78.9 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    L+ ++   E R  V+ D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LVVSAAPIEKRAAVMEDDLLIDVEIVRPSEKVQVGDIYYGFIQKIDRKMEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPASYDKTQGAKIPV 86


>gi|224499797|ref|ZP_03668146.1| hypothetical protein LmonF1_08969 [Listeria monocytogenes Finland
           1988]
          Length = 453

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +G   + +          R      + K   + 
Sbjct: 80  QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++        +  + + A     P L+    + I
Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQTRDKYQTLVKEASKRKKPGLLLSAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +            +  +   +  +F K+L   Y       +    +F   GI+ Q+
Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     +   L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533
            LE+TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV+     LN
Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    LI ++   E RVV + D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86


>gi|16803583|ref|NP_465068.1| hypothetical protein lmo1543 [Listeria monocytogenes EGD-e]
 gi|224501517|ref|ZP_03669824.1| hypothetical protein LmonFR_03202 [Listeria monocytogenes FSL
           R2-561]
 gi|255028683|ref|ZP_05300634.1| hypothetical protein LmonL_04956 [Listeria monocytogenes LO28]
 gi|284801933|ref|YP_003413798.1| hypothetical protein LM5578_1688 [Listeria monocytogenes 08-5578]
 gi|284995075|ref|YP_003416843.1| hypothetical protein LM5923_1640 [Listeria monocytogenes 08-5923]
 gi|16410972|emb|CAC99621.1| lmo1543 [Listeria monocytogenes EGD-e]
 gi|284057495|gb|ADB68436.1| hypothetical protein LM5578_1688 [Listeria monocytogenes 08-5578]
 gi|284060542|gb|ADB71481.1| hypothetical protein LM5923_1640 [Listeria monocytogenes 08-5923]
          Length = 453

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +G   + +          R      + K   + 
Sbjct: 80  QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++        +  + + A     P L+    + I
Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +            +  +   +  +F K+L   Y       +    +F   GI+ Q+
Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     +   L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533
            LE+TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV+     LN
Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    LI ++   E RVV + D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86


>gi|290893944|ref|ZP_06556920.1| ribonuclease [Listeria monocytogenes FSL J2-071]
 gi|290556482|gb|EFD90020.1| ribonuclease [Listeria monocytogenes FSL J2-071]
          Length = 453

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +    + +          R +      K   + 
Sbjct: 80  QGAKIPVQIVREGSATKLPLLTAVLEFSSDLLIYLYGKEYISVSKRIVE-----KITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++           + + A     P L+    + I
Sbjct: 135 IMETLVEENEALIIRSNAEFATKEQLQQALVQARDKHQALLKEASKRKKPGLLLAAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                               +   +  +F K+L  ++       +    +F   GI+ Q+
Sbjct: 195 LT------NTKQFVERYKPSEIITDDFEFAKMLETTWPDQQITLKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVELVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     + + L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533
            LE TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV      LN
Sbjct: 369 FLEMTTIPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLDAFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    L+ ++   E R  V+ D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LVVSAAPIEKRAAVMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKMEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPASYDKTQGAKIPV 86


>gi|317500379|ref|ZP_07958603.1| hypothetical protein HMPREF1026_00546 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089614|ref|ZP_08338513.1| hypothetical protein HMPREF1025_02096 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898134|gb|EFV20181.1| hypothetical protein HMPREF1026_00546 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330404982|gb|EGG84520.1| hypothetical protein HMPREF1025_02096 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 404

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 176/391 (45%), Gaps = 6/391 (1%)

Query: 89  LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148
           + K  N  +T      D V              ++  I     +   ++I +A  ++   
Sbjct: 7   IEKSKNKIRTYLIEDDDIVEIHTSINEEQVPPGKLGDIYIGKVQNIVQNIGAAFIEITKG 66

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
           V         +      +       I     L+VQI +E    K   VT++LS  GRY+V
Sbjct: 67  VNCYFDLKDAENAYFTHKSGKKPLCI--GDELVVQISREAVKTKAPTVTSHLSFTGRYAV 124

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           L    ++    S+    P   ++  +           G+I+RT        E++ + E L
Sbjct: 125 LTHGNTRIGVSSKI---PRALRDEFKDRLSRMKNEQFGIIIRTNAKGVPFQEVEDEIERL 181

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
              +  +   AL+ VA   +          ++++Y + + EI++ G+  Y E +++    
Sbjct: 182 KEEYKKLLNTALSRVAFSRLKSAPPTYISDLKNVYMEGMEEIVIEGKDLYTEIQEYFLTE 241

Query: 329 MPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
            P   +++R       P+      E  L+   +  V L + GY+II  TEAL  IDVNSG
Sbjct: 242 FPEKVKLLRLYENPDFPLCKLYSTETALEKALKEFVWLKNGGYLIIQPTEALTVIDVNSG 301

Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
           +   +      A++ N+EAA+E A+Q+RLR+L+G+I+VDF+++E K++   + K+ +  L
Sbjct: 302 KMAVKSKNSAGAMKVNMEAAQEAAKQIRLRNLSGIIIVDFVNLESKEDTGILLKEFRNFL 361

Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
            KD     +  ++  GL+E++R+++R  + E
Sbjct: 362 SKDPIPTTLVDMTMLGLVEITRKKVRKPLYE 392



 Score = 55.0 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQI----KGNIYLAKVTRVEPSLQA 56
          M  K+LI+ S   + R  ++ D+ + E+   S +++Q+     G+IY+ KV  +  ++ A
Sbjct: 1  MKRKILIEKSK-NKIRTYLIEDDDIVEIHT-SINEEQVPPGKLGDIYIGKVQNIVQNIGA 58

Query: 57 AFVDY 61
          AF++ 
Sbjct: 59 AFIEI 63


>gi|313608642|gb|EFR84493.1| ribonuclease [Listeria monocytogenes FSL F2-208]
          Length = 453

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +    + +          R +      K   + 
Sbjct: 80  QGAKIPVQIVREGSATKLPLLTAVLEFSSDLLIYLYGKEYISVSKRIVE-----KITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++           + + A     P L+    + I
Sbjct: 135 IMETLVEENEALIIRSNAEFATKEQLQQALIQARDKHQALLKEASKRKKPGLLLAAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                               +   +  +F K+L  ++       +    +F    I+ Q+
Sbjct: 195 LT------NTKQFVERYKPSEIITDDFEFAKMLETTWPDQQITLKKSADLFADLRIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVELVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     + + L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533
            LE TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV      LN
Sbjct: 369 FLEMTTIPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLDAFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 78.5 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    L+ ++   E R  V+ D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LVVSAAPIEKRAAVMEDDLLIDVEIVRPSEKVQVGDIYYGFIQKIDRKMEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPASYDKTQGAKIPV 86


>gi|254829698|ref|ZP_05234353.1| hypothetical protein Lmon1_00015 [Listeria monocytogenes 10403S]
          Length = 453

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 165/397 (41%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +G   + +          R        K   + 
Sbjct: 80  QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRISD-----KITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++        +  + + A       L+    + I
Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKSGLLLSAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +            +  +   +  +F K+L   Y       +    +F   GI+ Q+
Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     +   L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533
            LE+TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV+     LN
Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 76.2 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    LI ++   E RVV + D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDQKVEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86


>gi|313618779|gb|EFR90678.1| ribonuclease [Listeria innocua FSL S4-378]
          Length = 453

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 176/396 (44%), Gaps = 23/396 (5%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   ++  L   G   + +       +IS++I +    K + E 
Sbjct: 80  QGAKIPVQIVREGSATKLPLLSAVLEFPGDLLIYLHGKEY-ISISKRIQDKEPLKIIMES 138

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                      +I+R++  + TK +++         +  + + A     P L+    + +
Sbjct: 139 LLE----ENEAIIIRSSAETATKEQLELALNQAREKYQTLVKEAETRKKPGLLLSAASGV 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +    + +   I++ +       +F K++  ++       +    +F   GI+ Q+
Sbjct: 195 FLSTKQFIQRYMPIEIITDD------FEFAKIVEANFTDKEVSLKKSADLFADLGIKQQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNS R       E T    N++A  EI RQ+R
Sbjct: 249 DRLSRPVVHLSNGSSLFIEKTEAMWVVDVNSSRFKGTSAKEKTVEAVNIKAVPEIFRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    ++    + + +++  +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEEGQGELREAIEKESREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL-LNQ 534
            LE TT  C  C G G++ S+ ++A  + R +   ++   +   ++ T   +  +L LN 
Sbjct: 369 FLEVTTIPCPVCYGTGHVASKDTLAFQLERELSGIMMGDPSSIQVITTEDVLDAFLDLNT 428

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                +++E         V    +    + I +   
Sbjct: 429 FNNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I+A+++ E RV VL D+ + +++      K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKLVINAANI-EKRVAVLEDDVLIDVEIIRPSNKIQVGDIFYGFIQKIDRKMDAAFVDLG 60

Query: 63 GNRHGFLPFLEIHPDY-----YQIPF 83
              GF+   +I   Y      +IP 
Sbjct: 61 NQNKGFIHLKDIPASYEKTQGAKIPV 86


>gi|330722481|gb|EGH00312.1| Ribonuclease E [gamma proteobacterium IMCC2047]
          Length = 650

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 117/330 (35%), Gaps = 41/330 (12%)

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489
           M   +N R VE ++K++LK DRAR+QVG IS FGLLEMSRQR+R S+ E++T VC  C G
Sbjct: 1   MSSNRNQREVENRIKDALKLDRARIQVGRISRFGLLEMSRQRLRPSLGETSTIVCPRCSG 60

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            G IRS  S++LS++R +EE   +     I       V  +LLN+KR  + E E R  V 
Sbjct: 61  HGTIRSIESLSLSVMRLIEEESSKDRTAQIHAFLPVVVATFLLNEKREKVAEIEKREDVR 120

Query: 550 INVVIGIELADKLFYIEKGSPVQALVNT---------------------GHKVGSDSQAP 588
           I ++    +    F +++      +++T                       K    +   
Sbjct: 121 IVIIPNPNMETPHFDVQRIREDNEIIHTTDASYGLIESDDDASALIPDVSSKKKEAAVKS 180

Query: 589 SYDKNIECVWQDEALLPIPKS--------------------ESLEDIQDNIVSEESTGVI 628
                      D      P S                    E  + +    V  E     
Sbjct: 181 VMPSTAAPAHTDTPAEAKPTSTSQSDEKPGFLKRIIGGLFGEPTQPVPSKPVEPEQAEKT 240

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
             +  R  +R    D  D          +           +  D   +   +   +   +
Sbjct: 241 EPKAPRSEQRPQRNDRRDQSKGDHDEQPRERRGRGSRNRSQDRDRGRNQDNKRQENKDQQ 300

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +          +   +     +++R 
Sbjct: 301 KPQQADKNTKREAAANEQGNDKKPQRRSRQ 330


>gi|254898291|ref|ZP_05258215.1| hypothetical protein LmonJ_00710 [Listeria monocytogenes J0161]
 gi|254912217|ref|ZP_05262229.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936545|ref|ZP_05268242.1| ribonuclease [Listeria monocytogenes F6900]
 gi|258609139|gb|EEW21747.1| ribonuclease [Listeria monocytogenes F6900]
 gi|293590190|gb|EFF98524.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 453

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +G   + +          R      + K   + 
Sbjct: 80  QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++        +  + + A     P L+    + I
Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +            +  +   +  +F K+L   Y       +    +F   GI+ Q+
Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     +   L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGISEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533
            LE+TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV+     LN
Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    LI ++   E RVV + D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86


>gi|313623650|gb|EFR93807.1| ribonuclease [Listeria innocua FSL J1-023]
          Length = 453

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 175/397 (44%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   ++  L   G   + +       +IS++I +    K + E 
Sbjct: 80  QGAKIPVQIVREGSSTKLPLLSAVLEFPGDLLIYLHGKEY-ISISKRIQDKEPLKIIMES 138

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                      +++R++  + TK +++    +    +  + + A     P L+    + +
Sbjct: 139 LLE----ENEAIVIRSSAETATKGQLELALNHAREKYQTLIKEAETRKKPGLLLSAASGV 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +    + +   I++ +       +F K++  ++       +    +F   GI+ Q+
Sbjct: 195 FLSTKQFIQRYMPTEIITDD------FEFAKIVEANFTDKEVSLKKSADLFADLGIKQQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNS R       E T    N++A  EI RQ+R
Sbjct: 249 DRLSRPVVHLSNGSSLFIEKTEAMWVVDVNSSRFKGTSAKEKTVEAVNIKAVPEIFRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    ++    + + +++  +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEEGQGELREAIEKESREEYVTTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533
            LE TT  C  C G G++ S+ ++A  + R +   ++     +I V    DV      LN
Sbjct: 369 FLEVTTIPCPVCYGTGHVASKDTLAFQLEREL-SGIMMGDPSSIQVIATEDVLDAFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I+A+H+ E RV VL D+ + +++      K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKLVINAAHI-EKRVAVLEDDVLIDVEIIRPSNKIQVGDIFYGFIQKIDRKMDAAFVDLG 60

Query: 63 GNRHGFLPFLEI 74
              GF+   +I
Sbjct: 61 NQNKGFIHLKDI 72


>gi|299822796|ref|ZP_07054682.1| ribonuclease G [Listeria grayi DSM 20601]
 gi|299816325|gb|EFI83563.1| ribonuclease G [Listeria grayi DSM 20601]
          Length = 446

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 163/395 (41%), Gaps = 31/395 (7%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               L VQI +E    K    T  +  A    VL+   +   ++S+++T+      +K  
Sbjct: 83  QGAKLPVQITREGTAIKLPLATGNIEFANDLVVLIEG-AHYLSVSKRLTSEQRSSWVK-- 139

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A    + A    ILR+  A ++  E+      L + +  ++E   +     LV +     
Sbjct: 140 AVEPILEADEAAILRSKAAEKSIEEVTSAIFELRQRFQTLKEKIGSRKKAGLVQKNVLDF 199

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
              I                         +  ++    R     +     F    ++  +
Sbjct: 200 TEVISQWQQHYPD----------------VMRVVTDDKRASIYTDYQEDTFHSYHLQPAI 243

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++L Q EV L +   + I +TEA+  IDVN+ R        +     NL AAEEI RQ+R
Sbjct: 244 ENLLQPEVILANGVSLFIEKTEAMWIIDVNTHRYKSNQAKSEVMATVNLAAAEEIVRQIR 303

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++GLIV+DF+    +   + V+ K++    K+    QV   S  GL++++R++ + S
Sbjct: 304 LRNMSGLIVIDFVGGMNETGFQKVKDKMEVLANKEYVTTQVADFSKTGLMQLTRRKKQQS 363

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
           +LE+ T  C  C G+G+I+S  S+A  + R +  Y  +  ++  +  T   +  +L  Q 
Sbjct: 364 LLETVTVACPVCNGSGHIQSALSLAYQLERELMSY--KGLSYASVYVTEPVLSAFLDLQV 421

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
              I + E   G           A   + I +   
Sbjct: 422 CEHI-DLEWEIGEE---------AVPFYAIRRTES 446



 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 1  MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M   K +I ++   E  + +L   R+ E       +    G+IY A V +++  + AAF+
Sbjct: 1  MTRMKEIIISNKNTEGHLALLESGRLLEYRLVRPSEDVSVGDIYYAAVEKIDKKINAAFL 60

Query: 60 DYGGNRHGFLPFLE 73
          + GG+   F+   +
Sbjct: 61 NLGGSEKAFIHMKD 74


>gi|228967525|ref|ZP_04128552.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792180|gb|EEM39755.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 299

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 150/315 (47%), Gaps = 16/315 (5%)

Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
            + L +L++ ++       AP L++     + R  ++   + I +++V      +E +  
Sbjct: 1   MQMLQQLYEELKRKEGQGKAPLLLHRPATFLDRVFQENPIETIEKVVVDTRSIVKELEGK 60

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           +     S+      Y +   +F   GIE +++   Q  V LP+  Y+I+ Q E +  IDV
Sbjct: 61  IGKEKVSF------YNEKSSMFNHFGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDV 114

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           N+G+ T +  ++DT L+TN  AAEEIARQLRLRD+ G+I++DFI+M+ +++   V + L 
Sbjct: 115 NTGKFTGKQNLQDTVLRTNEVAAEEIARQLRLRDIGGMILIDFINMKRREDKEMVRECLM 174

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
            +++ DR   +V   +  G+LEM+R+R + S+ +   + C  CK  GY+ S  ++A  + 
Sbjct: 175 AAMQNDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECVPCKATGYMMSYETIAYELE 234

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R +  Y        +++    D+    L        E +      I          + + 
Sbjct: 235 RELITYGNIED-EAVLIAAPKDLQKQFLQ------KELQKNIPFEIYFKDD---MIEKYA 284

Query: 565 IEKGSPVQALVNTGH 579
           I +      +V    
Sbjct: 285 IVRFGSKTEIVERKK 299


>gi|210612762|ref|ZP_03289477.1| hypothetical protein CLONEX_01679 [Clostridium nexile DSM 1787]
 gi|210151455|gb|EEA82463.1| hypothetical protein CLONEX_01679 [Clostridium nexile DSM 1787]
          Length = 394

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 172/392 (43%), Gaps = 10/392 (2%)

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
            ++   +  ++  + +     + T                       + +     V    
Sbjct: 11  KEQVLTSLLENGEIVEFHCSPNETKEQAVLGNIYVGKVKNIVPNIGAAFVEVAKGVECYY 70

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
              +  +P    K  K+  CI         LLVQ+ KE    K   V+  LS  G+Y+VL
Sbjct: 71  ALDENETPIFTQKIGKKPLCI------GDELLVQVSKEAVKTKVPTVSGKLSFTGKYAVL 124

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
               ++    S+    P + +   +           G I+RT      +  +K + E L+
Sbjct: 125 TTGDTRIGISSKL---PKESREHFQKLAASYQSDAYGFIIRTNAKDVAEEVLKAELEQLI 181

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
           + +  + ++A   V    + +        ++++Y   + EI++     Y E   ++K+  
Sbjct: 182 QEYKELVKIAGTRVCYSCLKKAPKQYLSELKNIYQDGLKEIVIEDPILYEETIAYLKMYQ 241

Query: 330 P-SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
           P    ++ R  +   P+     IE +L+   +  V L S  Y++I  TEAL  IDVN+G+
Sbjct: 242 PEDLGKVHRYEDTLLPLDKLHNIERKLEDALKERVWLKSGAYLVIQPTEALTVIDVNTGK 301

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
              +   E T L+ N+EAA+E+A+Q+RLR+L+G+I+VDFI++  K+    +    ++ L+
Sbjct: 302 CISKKRDERTYLKINIEAAKEVAKQIRLRNLSGIILVDFINLSGKELMAELVDVFQKELR 361

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           KD     +  I+   L+E++R+++R  + E+ 
Sbjct: 362 KDPISTTLVDITKLQLVEVTRKKVRKPLKEAI 393



 Score = 64.6 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIK--GNIYLAKVTRVEPSLQAAF 58
          M  K++I     E+    +L +  + E        K+    GNIY+ KV  + P++ AAF
Sbjct: 1  MERKLII-TRWKEQVLTSLLENGEIVEFHCSPNETKEQAVLGNIYVGKVKNIVPNIGAAF 59

Query: 59 VDY 61
          V+ 
Sbjct: 60 VEV 62


>gi|195941165|ref|ZP_03086547.1| ribonuclease E [Escherichia coli O157:H7 str. EC4024]
          Length = 337

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 114/326 (34%), Positives = 174/326 (53%), Gaps = 7/326 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330
           W+ +++ A +  AP L+++E N+I RA RD   +DI EI++   K    A+  +  L  P
Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250

Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390
            +   ++ Y    P+F    IE Q++S  Q EV LPS G ++I+ TEAL +ID+NS R+T
Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310

Query: 391 REHCIEDTALQTNLEAAEEIARQLRL 416
           R   IE+TA  TNLEAA+E       
Sbjct: 311 RGGDIEETAFNTNLEAADESPASSAC 336



 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78


>gi|213582025|ref|ZP_03363851.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
          str. E98-0664]
          Length = 82

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|313637703|gb|EFS03077.1| ribonuclease [Listeria seeligeri FSL S4-171]
          Length = 450

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 179/458 (39%), Gaps = 35/458 (7%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN----- 176
           E   + +       E I   +       +  +  +   V    +R+  I           
Sbjct: 19  ENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLGNQRKGFIHLKDIPDIYEK 78

Query: 177 --RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
                L VQ+V+E    K   +T  L  +G   V +          R +     +  ++ 
Sbjct: 79  TQGAKLPVQVVREGSATKLPLLTAVLEFSGDLLVYLHGKEYISISKRIMDKDSLKTTMEA 138

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +           VI+R+   + T+ +++         +  +   +       L+ +  + 
Sbjct: 139 LLLE-----DEAVIIRSDAENATEEQLENALNEARERYQQLVRKSKKRKKAGLLMDSDSG 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           +  + +    +     I++ +  + ++ D                +    IF    I+ Q
Sbjct: 194 VFFSAKQFIQRYQPIEILTDDFDFAKSIDVDGE---------VIIKKSADIFADLKIQPQ 244

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++ L +  V L +   + I +TEA+  IDVNSG        E T    N +A  EI RQ+
Sbjct: 245 MERLARPVVHLTNGSSLFIEKTEAMWVIDVNSGGYKGSTEKEKTVALINQKAVSEILRQI 304

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR+++G+I+VDFI    ++    + + +++  +++    Q+ A+S  GLL+++R++ + 
Sbjct: 305 RLRNMSGMILVDFIGGMSEEGYTELYETIEKQTREEYTTTQIAALSQSGLLQLTRRKKQR 364

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLL 532
           S LE TT  C  C G G++ S+ ++A  + R +   ++Q    +I + T  DV      L
Sbjct: 365 SFLEVTTIPCPVCYGTGHVASKDTLAYQLERELT-GIMQGEPDSIQIITTEDVLDAFLDL 423

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
           N      +++E         V    +    + I +   
Sbjct: 424 NILNEAPIDWE---------VADERV--PFYQILRVEN 450



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I A+H+ E R+ VL ++ + +++     +K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKVVISAAHI-EKRIAVLENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLG 60

Query: 63 GNRHGFLPFLEIHPDYY 79
            R GF+   +I PD Y
Sbjct: 61 NQRKGFIHLKDI-PDIY 76


>gi|121590781|ref|ZP_01678110.1| ribonuclease, Rne/Rng family [Vibrio cholerae 2740-80]
 gi|121547383|gb|EAX57497.1| ribonuclease, Rne/Rng family [Vibrio cholerae 2740-80]
          Length = 176

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 87/170 (51%)

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455
           E+T   TN+EA + IARQLRLR+L G+I++DFIDM   ++ + V   L+ +L KDR +  
Sbjct: 4   EETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTN 63

Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515
           +   +  GL+EM+R+R R S+       C  C+G G +++  +V   ILR +      Y 
Sbjct: 64  INGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNRAYD 123

Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           A   +V+    V   L  ++   + E E   G  + +        + F +
Sbjct: 124 ADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 173


>gi|254828223|ref|ZP_05232910.1| ribonuclease [Listeria monocytogenes FSL N3-165]
 gi|258600611|gb|EEW13936.1| ribonuclease [Listeria monocytogenes FSL N3-165]
          Length = 453

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   +T  L  +G   + +          R      + K   + 
Sbjct: 80  QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V     +I+R+     TK ++++        +  + + A     P L+    + I
Sbjct: 135 IMETIVEENEAIIIRSNAKFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGI 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +            +  +   +  +F K+L   Y       +    +F   GI+ Q+
Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+R
Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    +     +   L+   +++    QV A+S  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533
            LE+TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV+     LN
Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                 +++E         V    +    + I +   
Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M    LI ++   E RVV + D+ + +++     +K   G+IY   + +++  ++AAFVD
Sbjct: 1  MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58

Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83
           G N  GF+   +I   Y      +IP 
Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86


>gi|291524789|emb|CBK90376.1| Ribonucleases G and E [Eubacterium rectale DSM 17629]
          Length = 402

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 149/330 (45%), Gaps = 7/330 (2%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            +     +  +   +E +     +LVQ++K+    K   VTT LS+ G   +L    ++ 
Sbjct: 74  NDAKNPVYTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIFGSNVILTNFDTQI 133

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPA---GMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
              S+   +      L++            G G+I+RT   +     + +D   + + ++
Sbjct: 134 GVSSKL--DKERAALLRKAVLLSCADHEKEGYGIIVRTNAKNVEDKAVSQDAYSVAQKYN 191

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + + A +      VY   +     ++ +    +  I    +  Y        +   +  
Sbjct: 192 QIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLLTEYGIYDHAPE 251

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
           +I+R  +    +    GI   +D+L    V L   G +II Q E L  IDVNS ++    
Sbjct: 252 KIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSG 311

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
                 L+TN+EAA+EIARQLRLR+++G+I++DFI+M+ + +  ++ + LK  +K D   
Sbjct: 312 SNS--ILKTNMEAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEALKRYIKDDNTV 369

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
                I+  GL+E++R+++  S+ +   K 
Sbjct: 370 CTFVDITKLGLVELTRKKVHKSLKQILEKT 399



 Score = 55.4 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 15 TRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          T   ++  +   ++       K  I  NIY A+V ++ P + AAFV    N+  +L   +
Sbjct: 17 TVYALMDENGNYKDFQL-LPEKDTIINNIYAARVNKILPGINAAFVTIAQNKSCYLSLND 75

Query: 74 IHPDYYQIPFSDRQALLKESNI 95
               Y    S ++ L +   I
Sbjct: 76 AKNPVYTNKKSKKEGLCEGDEI 97


>gi|289829153|ref|ZP_06546808.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
          str. E98-3139]
          Length = 102

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|313633130|gb|EFS00023.1| ribonuclease [Listeria seeligeri FSL N1-067]
          Length = 450

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 178/458 (38%), Gaps = 35/458 (7%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN----- 176
           E   + +       E I   +       +  +  +   V    +R+  I           
Sbjct: 19  ENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLGNQRKGFIHLKDIPDIYEK 78

Query: 177 --RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
                L VQ+V+E    K   +T  L  +G   V +          R +     +  ++ 
Sbjct: 79  TQGAKLPVQVVREGSATKLPLLTAVLEFSGDLLVYLHGKEYISISKRIMDKDSLKTTMEA 138

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +           VI+R+   + T+ +++         +  +   +       L+ +  + 
Sbjct: 139 LLLE-----DEAVIIRSDAENATEEQLENALNEARERYQQLVRKSKKRKKAGLLMDSDSG 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           +  + +    +     +++ +  + ++ D                +    IF    I+ Q
Sbjct: 194 VFFSAKQFIQRYQPIEVMTDDFDFAKSIDVDGE---------VIIKKSADIFADLKIQPQ 244

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++ L +  V L +   + I +TEA+  IDVNSG        E T    N +A  EI RQ+
Sbjct: 245 MERLARPVVHLTNGSSLFIEKTEAMWVIDVNSGGYKGSTEKEKTVALINQKAVSEILRQI 304

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR+++G+I+VDFI    ++    + + ++   +++    Q+ A+S  GLL+++R++ + 
Sbjct: 305 RLRNMSGMILVDFIGGMSEEGYTELYETIERQTREEYTTTQIAALSQSGLLQLTRRKKQR 364

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLL 532
           S LE TT  C  C G G++ S+ ++A  + R +   ++Q    +I + T  DV      L
Sbjct: 365 SFLEVTTIPCPVCYGTGHVASKDTLAYQLERELT-GIMQGEPDSIQIITTEDVLDAFLDL 423

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
           N      +++E         V    +    + I +   
Sbjct: 424 NILNEAPIDWE---------VADERV--PFYQILRVEN 450



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I A+H+ E R+ VL ++ + +++     +K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKVVISAAHI-EKRIAVLENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLG 60

Query: 63 GNRHGFLPFLEIHPDYY 79
            R GF+   +I PD Y
Sbjct: 61 NQRKGFIHLKDI-PDIY 76


>gi|291550342|emb|CBL26604.1| Ribonucleases G and E [Ruminococcus torques L2-14]
          Length = 405

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 181/396 (45%), Gaps = 4/396 (1%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           ++ +L E       +  + +D         +D   +       +  + +          +
Sbjct: 9   KRKVLIEKKENHVWTFFLEEDQIAEIHCAKSDEQEKVHQIGDIYVAKVQNIVQNIGAAFL 68

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
                        D    F      ++ +     L+VQI +E    K   VT  +SL GR
Sbjct: 69  EIEPGVNCYFDLRDAQNAFFTHKIGKKPLCIGDELVVQISREAVKTKVPTVTGNISLTGR 128

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y+VL    ++    S+   +  DR+  KE  +  +     G+I+RT        ++  + 
Sbjct: 129 YAVLTHGNTRIGVSSKI--SKKDREAYKERLQEYQNDQ-YGLIIRTNAKDAAFEDVLTEI 185

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           E L   ++++ + A + V    +          ++++Y   + EI+V+  + Y +   + 
Sbjct: 186 EQLKAEYEHLLKYAASRVCFSCLKSAPPSYITDLKNVYMDGMEEILVNDAEMYEKICSYF 245

Query: 326 KLLMPSYARIVRQYEDPHPIFFR-SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
           K  MP    +V  ++D      +    E  ++      V L   GY++I  TEAL  IDV
Sbjct: 246 KKEMPENLELVHFHDDSGYPLGKIYSTETAVEHALAERVWLKHGGYLVIQVTEALTVIDV 305

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           NSG++ R+   +++ L+ NLEAA+E ARQ+RLR+L+G+I++DFI+ +E+KN  ++ K+ +
Sbjct: 306 NSGKNVRKKGDDESTLKMNLEAAKETARQIRLRNLSGIILIDFINQDEEKNEETLLKEFR 365

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
             L KD  +  +  I+  GL E++R+++R  + E+ 
Sbjct: 366 YFLAKDPIQTTLVDITALGLAEVTRKKVRKPLHEAV 401



 Score = 41.9 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 20 LRDNRVEELDF----ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
          L ++++ E+      E E   QI G+IY+AKV  +  ++ AAF++ 
Sbjct: 26 LEEDQIAEIHCAKSDEQEKVHQI-GDIYVAKVQNIVQNIGAAFLEI 70


>gi|238924054|ref|YP_002937570.1| ribonuclease G and E [Eubacterium rectale ATCC 33656]
 gi|238875729|gb|ACR75436.1| ribonuclease G and E [Eubacterium rectale ATCC 33656]
 gi|291528890|emb|CBK94476.1| Ribonucleases G and E [Eubacterium rectale M104/1]
          Length = 402

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 150/330 (45%), Gaps = 7/330 (2%)

Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216
            +     +  +   +E +     +LVQ++K+    K   VTT LS+ G   +L    ++ 
Sbjct: 74  NDAKNPVYTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIFGSNVILTNFDTQI 133

Query: 217 ETISRKITNPVDRKNLKEIARGLEVPA---GMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
              S+   +      L++            G G+I+RT   +     + +D   + + +D
Sbjct: 134 GVSSKL--DKERAALLRKAVLLSCADHEKEGYGIIVRTNAKNVEDKAVSQDAYSVAQKYD 191

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            + + A +      VY   +     ++ +    +  I    +  Y        +   +  
Sbjct: 192 QIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLLTEYGIYDHAPE 251

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
           +I+R  +    +    GI   +D+L    V L   G +II Q E L  IDVNS ++    
Sbjct: 252 KIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSG 311

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
                 L+TN+EAA+EIARQLRLR+++G+I++DFI+M+ + +  ++ ++LK  +K D   
Sbjct: 312 SNS--ILKTNMEAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELKRYIKDDNTV 369

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
                I+  GL+E++R+++  S+ +   K 
Sbjct: 370 CTFVDITKLGLVELTRKKVHKSLKQILEKT 399



 Score = 55.0 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 15 TRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
          T   ++  +   ++       K  I  NIY A+V ++ P + AAFV    N+  +L   +
Sbjct: 17 TVYALMDENGNYKDFQL-LPEKDTIINNIYAARVNKILPGINAAFVTIAQNKSCYLSLND 75

Query: 74 IHPDYYQIPFSDRQALLKESNI 95
               Y    S ++ L +   I
Sbjct: 76 AKNPVYTNKKSKKEGLCEGDEI 97


>gi|154506681|ref|ZP_02043138.1| hypothetical protein RUMGNA_03949 [Ruminococcus gnavus ATCC 29149]
 gi|153793280|gb|EDN75703.1| hypothetical protein RUMGNA_03949 [Ruminococcus gnavus ATCC 29149]
          Length = 413

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 169/393 (43%), Gaps = 8/393 (2%)

Query: 89  LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148
           L KE  I     E       H  +   + H    +  I     +    +I +A  ++   
Sbjct: 9   LKKEGKIWTFLLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFIEIAPG 68

Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
            E     S         +       I     L+VQI +E    K   V++ ++  GRY+V
Sbjct: 69  KECYYDLSQAPQAIFTHKIGKKPLCI--GDELVVQISREAVKTKAPTVSSNINFTGRYAV 126

Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
           L    ++  T  +   +    ++  +           G+I+RT         +  + + L
Sbjct: 127 LTTGNTRIGTSGKLPRS---LRDTYKEKLSHLKNEDYGLIIRTNAKDVPFETVLEEIQKL 183

Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-L 327
                 ++E A        + E        ++++Y   +S II    K Y++   F++  
Sbjct: 184 ENACVKLKETAPFRTCFSCLQEAPPSYITDLKNVYADGLSAIITDDPKLYQQIHGFLQAE 243

Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387
                +++    E   P+      ++ ++   +  V L +  Y++I  TEAL  +DVNSG
Sbjct: 244 QPEDLSKLQFYEEQLLPLSKLYSTDIAVERALKEYVWLKNGAYLVIQPTEALTVVDVNSG 303

Query: 388 RST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           + +   +    +T L+ NLEAA+E ARQ+RLR+++G+I++DFI+M++    + + K+ + 
Sbjct: 304 KYSAKTKKKSAETYLKINLEAAKETARQIRLRNISGIILIDFINMDDPDMMQELLKQFRR 363

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
            L +D  +  V  ++   L+E++R+++R  + E
Sbjct: 364 FLGEDPIQTSVVDVTALQLVEVTRKKVRRPLHE 396



 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 19 VLRDNRVEELDF---ESEHKKQIK-GNIYLAKVTRVEPSLQAAFVDY 61
          +L ++ + E+     +S+  +Q   G+IY+ KV  +  ++ AAF++ 
Sbjct: 19 LLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFIEI 65


>gi|16800646|ref|NP_470914.1| hypothetical protein lin1578 [Listeria innocua Clip11262]
 gi|16414065|emb|CAC96809.1| lin1578 [Listeria innocua Clip11262]
          Length = 453

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 176/396 (44%), Gaps = 23/396 (5%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               + VQIV+E    K   ++  L  +G   + +       +IS++I +    K + E 
Sbjct: 80  QGAKIPVQIVREGSATKLPLLSAVLEFSGDLLIYLHGKEY-ISISKRIQDKEPLKIIMES 138

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                      +I+R++  + TK +++         +  + + A     P L+    + +
Sbjct: 139 LLE----ENEAIIIRSSAETATKEQLELALNQAREKYQTLVKEAETRKKPGLLLSAASGV 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             + +    + +   I++ +       +F K++  ++       +    +F   GI+ Q+
Sbjct: 195 FLSTKQFIQRYMPIEIITDD------FEFAKIVEANFTDKEVSLKKSADLFADLGIKQQM 248

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L +  V L +   + I +TEA+  +DVNS R       E T    N++A  EI RQ+R
Sbjct: 249 DRLSRPVVHLSNGSSLFIEKTEAMWVVDVNSSRFKGTSAKEKTVEAVNIKAVPEIFRQIR 308

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+++G+I+VDFI    ++    + + +++   ++    QV A++  GLL+++R++ + S
Sbjct: 309 LRNMSGMILVDFIGGMSEEGQGELREAIEKESLEEYITTQVAALTQSGLLQLTRRKKQQS 368

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL-LNQ 534
            LE TT  C  C G G++ S+ ++A  + R +   ++   +   ++ T   +  +L LN 
Sbjct: 369 FLEVTTIPCPVCYGTGHVASKDTLAFQLERELSGIMMGDPSSIQVITTEDVLDAFLDLNT 428

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
                +++E         V    +    + I +   
Sbjct: 429 FNNAPIDWE---------VADERV--PFYQIARVEN 453



 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I+A+++ E RV VL D+ + +++      K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKLVINAANI-EKRVAVLEDDVLIDVEIIRPSNKIQVGDIFYGFIQKIDRKMDAAFVDLG 60

Query: 63 GNRHGFLPFLEIHPDY-----YQIPF 83
              GF+   +I   Y      +IP 
Sbjct: 61 NQNKGFIHLKDIPASYEKTQGAKIPV 86


>gi|300926010|ref|ZP_07141833.1| hypothetical protein HMPREF9548_04038 [Escherichia coli MS 182-1]
 gi|300417954|gb|EFK01265.1| hypothetical protein HMPREF9548_04038 [Escherichia coli MS 182-1]
          Length = 102

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|209964944|ref|YP_002297859.1| ribonuclease, Rne [Rhodospirillum centenum SW]
 gi|209958410|gb|ACI99046.1| ribonuclease, Rne [Rhodospirillum centenum SW]
          Length = 392

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 146/318 (45%), Gaps = 9/318 (2%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
           + +R+  I ++++  Q +LVQ+  +  G+KGA +T  ++L GR+ V  P  S      R 
Sbjct: 80  RDRREARIGQLLRTGQAVLVQVKADAHGDKGAVLTMDVTLPGRFLVHAPLGSGLHLSRRL 139

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
              P   +  +   R L    G G I+R   AS     +  + E L   W      A  +
Sbjct: 140 GRGPERARV-QATLRDLLPAEG-GWIVRADAASADPGLLALEAESLWADWRQAARAADGA 197

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
            AP L+        RA+ +        I V G +   E + + +   P    +VR +   
Sbjct: 198 GAPALLLPAPTAPVRALLEFGGAGFDAIRVEGAEALAEVRRWCRDRAPDLEPLVRPHVAR 257

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
             +F    +   + +L +  V L   G ++I +TEAL  IDVN G            L T
Sbjct: 258 LSLFEEGDLAGAIAALAERRVPLAQGGSLVIERTEALTVIDVNGG-------ERGNPLST 310

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           NLEAA EIARQLRLR++ G++VVDF++M    +   +   L +++ +D A   V  +S  
Sbjct: 311 NLEAAREIARQLRLRNVGGIVVVDFVNMAAAADREHLLLTLTQAVSEDPAGTHVYGLSKL 370

Query: 463 GLLEMSRQRIRSSVLEST 480
           GL+EM+R R    V +  
Sbjct: 371 GLMEMTRSRRGPPVADLL 388



 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+  + ID S    +R  +LRD  + +L  +   +    G++ L +V RV   L AAFV+
Sbjct: 1  MSRALHIDRSGPL-SRAALLRDGELSDLHLDRLDRPAWLGSLRLGRVVRVVAGLDAAFVE 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G    G L   ++ P
Sbjct: 60 IGDRLPGLLNAADVRP 75


>gi|297170736|gb|ADI21759.1| ribonucleases G and E [uncultured actinobacterium HF0130_15N16]
          Length = 102

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|295097735|emb|CBK86825.1| S1 RNA binding domain [Enterobacter cloacae subsp. cloacae NCTC
          9394]
          Length = 145

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|289434823|ref|YP_003464695.1| ribonuclease, Rne/Rng family [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171067|emb|CBH27609.1| ribonuclease, Rne/Rng family [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 450

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 179/458 (39%), Gaps = 35/458 (7%)

Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN----- 176
           E   + +       E I   +       +  +  +   V    +R+  I           
Sbjct: 19  ENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLGNQRKGFIHLKDIPDIYEK 78

Query: 177 --RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
                L VQ+V+E    K   +T  L  +G   V +          R +     +  ++ 
Sbjct: 79  TQGAKLPVQVVREGSATKLPLLTAVLEFSGDLLVYLHGKEYVSISKRIMDKDSLKTTMEA 138

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +           VI+R+   + T+ +++         +  +   +     P L+ +  + 
Sbjct: 139 LLLE-----DEAVIIRSDAENATEEQLENALNEARERYQQLVRKSKKRKKPGLLKDSDSG 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           +  + +    +     I++ +  + ++ D                +    IF    I+ Q
Sbjct: 194 VFSSAKQFIQRYQPIEILTDDFDFAKSIDVDGE---------VIVKKSADIFADLKIQPQ 244

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           ++ L +  V L +   + I +TEA+  IDVNSG        E T    N +A  EI RQ+
Sbjct: 245 MERLARPVVHLTNGSSLFIEKTEAMWVIDVNSGGYKGSTEKEKTVALINQKAVSEILRQI 304

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR+++G+I+VDFI    ++    + + ++   +++    Q+ A+S  GLL+++R++ + 
Sbjct: 305 RLRNMSGMILVDFIGGMSEEGYTELYETIERQTREEYTTTQIAALSQSGLLQLTRRKKQR 364

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLL 532
           S LE TT  C  C G G++ S+ ++A  + R +   ++Q    +I + T  DV      L
Sbjct: 365 SFLEVTTIPCPVCYGTGHVASKDTLAYQLERELT-GIMQGEPDSIQIITTEDVLDAFLDL 423

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
           N      +++E         V    +    + I +   
Sbjct: 424 NILNEAPIDWE---------VADERV--PFYQILRVEN 450



 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I A+H+ E R+ VL ++ + +++     +K   G+I+   + +++  + AAFVD G
Sbjct: 2  KKVVISAAHI-EKRIAVLENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLG 60

Query: 63 GNRHGFLPFLEIHPDYY 79
            R GF+   +I PD Y
Sbjct: 61 NQRKGFIHLKDI-PDIY 76


>gi|291538931|emb|CBL12042.1| Ribonucleases G and E [Roseburia intestinalis XB6B4]
          Length = 383

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 19/324 (5%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP-VDRKNLKEI 235
              LLVQ+VKE    K  +V+T L+  G+Y +L     K    S+           + E 
Sbjct: 60  GDELLVQVVKEALKTKDPSVSTNLTFTGKYVILTTGKRKIGASSKLPKEKREKLLKIVED 119

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
               +     GVI+RT  A  +K E+  +   L      +   A   +   LV++E    
Sbjct: 120 FLSGKEQIPYGVIVRTNAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPW 179

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA------------------RIVR 337
           ++ +  LY  ++ E++    + +    +   +                        +I  
Sbjct: 180 QKMLNGLYETELGEVVTDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRY 239

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
             ++   +   SGI  QL    +  V L S  Y+II  TEAL  IDVN+G++  +  +++
Sbjct: 240 YEDEMVSLSALSGITSQLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQE 299

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
             L+ N+EAAEEIARQLRLR+++G+++VDFI++E K     +      +LKKD    Q+ 
Sbjct: 300 NFLKVNIEAAEEIARQLRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIV 359

Query: 458 AISNFGLLEMSRQRIRSSVLESTT 481
            ++  GL+E++R++I+ S+ ES +
Sbjct: 360 EMTKLGLVEVTRKKIKKSLRESLS 383



 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94
          GNIY+ +V  V  +L AAFV     ++ +LP  E+    +    S+++A+     
Sbjct: 8  GNIYIGRVENVVKNLNAAFVCIAPRQNCYLPLQELKNPVFTKKQSEKKAICAGDE 62


>gi|289809399|ref|ZP_06540028.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
          str. AG3]
          Length = 220

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|291536205|emb|CBL09317.1| Ribonucleases G and E [Roseburia intestinalis M50/1]
          Length = 418

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 19/324 (5%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP-VDRKNLKEI 235
              LLVQ+VKE    K  +V+T L+  G+Y +L     K    S+           + E 
Sbjct: 95  GDELLVQVVKEALKTKDPSVSTNLTFTGKYVILTTGKRKIGASSKLPKEKREKLLKIVED 154

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
               +     GVI+RT  A  +K E+  +   L      +   A   +   LV++E    
Sbjct: 155 FLSGKEQIPYGVIVRTNAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPW 214

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA------------------RIVR 337
           ++ +  LY  ++ E++    + +    +   +                        +I  
Sbjct: 215 QKMLNGLYETELGEVVTDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRY 274

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
             ++   +   SGI  QL    +  V L S  Y+II  TEAL  IDVN+G++  +  +++
Sbjct: 275 YEDEMVSLSALSGITSQLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQE 334

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
             L+ N+EAAEEIARQLRLR+++G+++VDFI++E K     +      +LKKD    Q+ 
Sbjct: 335 NFLKVNIEAAEEIARQLRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIV 394

Query: 458 AISNFGLLEMSRQRIRSSVLESTT 481
            ++  GL+E++R++I+ S+ ES +
Sbjct: 395 EMTKLGLVEVTRKKIKKSLRESLS 418



 Score = 60.4 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 3  NKMLIDASHVE--ETRVVVLRD--NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          N+ +I  + +E  E R+  L D   ++ E+  ES     + GNIY+ +V  V  +L AAF
Sbjct: 2  NRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAAF 61

Query: 59 VDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94
          V     ++ +LP  E+    +    S+++A+     
Sbjct: 62 VCIAPGQNCYLPLQELKNPIFTKKQSEKKAICAGDE 97


>gi|145640374|ref|ZP_01795958.1| ribonuclease E [Haemophilus influenzae R3021]
 gi|145274960|gb|EDK14822.1| ribonuclease E [Haemophilus influenzae 22.4-21]
          Length = 237

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TRVEPSL+AAFVDYG
Sbjct: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78



 Score = 85.0 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                       F+ +  I++++   Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L+VP G+G+I+RTAG  ++  E++ D + L+  
Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318
           W+ +++ + +  AP L+++E ++I RAIRD   +DI EI++   K +
Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKNF 237


>gi|240144146|ref|ZP_04742747.1| ribonuclease, Rne/Rng family [Roseburia intestinalis L1-82]
 gi|257203849|gb|EEV02134.1| ribonuclease, Rne/Rng family [Roseburia intestinalis L1-82]
          Length = 418

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 153/324 (47%), Gaps = 19/324 (5%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP-VDRKNLKEI 235
              LLVQ+VKE    K  +V+T L+  G+Y +L     K    S+           + E 
Sbjct: 95  GDELLVQVVKEALKTKDPSVSTNLTFTGKYVILTTGKRKIGASSKLPKEKREKLLKIVED 154

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
               +     GV++RT  A  +K E+  +   L      +   A   +   LV++E    
Sbjct: 155 FLSGKEQIPYGVVVRTNAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPW 214

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA------------------RIVR 337
           ++ +  LY  ++ E++    + +    +   +                        +I  
Sbjct: 215 QKMLNGLYETELGEVVTDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRY 274

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397
             ++   +   SGI  QL    +  V L S  Y+II  TEAL  IDVN+G++  +  +++
Sbjct: 275 YEDEMVSLSALSGITSQLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQE 334

Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457
             L+ N+EAAEEIARQLRLR+++G+++VDFI++E K     +      +LKKD    Q+ 
Sbjct: 335 NFLKVNIEAAEEIARQLRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIV 394

Query: 458 AISNFGLLEMSRQRIRSSVLESTT 481
            ++  GL+E++R++I+ S+ ES +
Sbjct: 395 EMTKLGLVEVTRKKIKKSLRESLS 418



 Score = 60.8 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 3  NKMLIDASHVE--ETRVVVLRD--NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          N+ +I  + +E  E R+  L D   ++ E+  ES     + GNIY+ +V  V  +L AAF
Sbjct: 2  NRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAAF 61

Query: 59 VDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94
          V     ++ +LP  E+    +    S+++A+     
Sbjct: 62 VCIAPGQNCYLPLQELKNPIFTKKQSEKKAICAGDE 97


>gi|121587610|ref|ZP_01677375.1| ribonuclease G [Vibrio cholerae 2740-80]
 gi|121548183|gb|EAX58255.1| ribonuclease G [Vibrio cholerae 2740-80]
          Length = 218

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++L++ +   ETRV ++    ++E+  E E K+ I GNIY  KV+RV P +QAAFVD
Sbjct: 1  MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIVP 75


>gi|213618936|ref|ZP_03372762.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
          str. E98-2068]
          Length = 272

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|213417522|ref|ZP_03350664.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
          str. E01-6750]
          Length = 141

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNRHGFLPFLEIHPDYY 79
            RHGFLP  EI  +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78



 Score = 44.2 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 12  EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 72  EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131

Query: 212 NTSKGETISR 221
           N  +   ISR
Sbjct: 132 NNPRAGGISR 141


>gi|296104961|ref|YP_003615107.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059420|gb|ADF64158.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 211

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|331091098|ref|ZP_08339940.1| hypothetical protein HMPREF9477_00583 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405320|gb|EGG84856.1| hypothetical protein HMPREF9477_00583 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 378

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 176/374 (47%), Gaps = 4/374 (1%)

Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167
            +   ++  +  + E+       +       I     +VSN++       + V   +   
Sbjct: 6   ENVLTSVKENDEIVELHISNTEDKYRLGNIYIGKVKKIVSNIQAAFIEIDKGVECYYDMT 65

Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227
               + ++  + L+VQI KE    K  AVT  +S  G+Y VL    ++    S+   +  
Sbjct: 66  EHGNKPLRVGEELIVQISKEAIKTKQPAVTRKISFTGKYCVLTVGDNRISFSSKI--DKE 123

Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287
            R+ L++           G ILRT        +I  +   L+  ++ +  +A   V    
Sbjct: 124 KREELRQFM-EPYHSEKYGFILRTNAKGAAVCDIAEEINRLIEEYEYIFRIAPTRVCFSC 182

Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347
           + E        ++++Y + +++I++  ++ Y     F++   P     +R YED      
Sbjct: 183 LKENEKPYIADLKNIYQEGLTDIVIEDKEIYNHVYSFLQREQPEDLDKLRLYEDKQLPLA 242

Query: 348 R-SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
           +   IE  L +  +  V L S  Y++I  TEAL  IDVN+G+   +   E   L+ N+EA
Sbjct: 243 KLYSIETVLQNALKERVWLKSGAYLVIQPTEALTVIDVNTGKCIGKKRDEVAYLKINIEA 302

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A+E+ARQ+RLR+L+G+I+VDFI++++K+    +   LK  L+KD  +  +  ++   L+E
Sbjct: 303 AKEVARQIRLRNLSGIILVDFINLDDKEKWEELLNYLKIHLRKDPIQTVLVDVTKLQLVE 362

Query: 467 MSRQRIRSSVLEST 480
           ++R+++R  + E+ 
Sbjct: 363 ITRKKVRKPLHENI 376



 Score = 61.1 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
          V  ++ + EL   +   K   GNIY+ KV ++  ++QAAF++ 
Sbjct: 12 VKENDEIVELHISNTEDKYRLGNIYIGKVKKIVSNIQAAFIEI 54


>gi|260437118|ref|ZP_05790934.1| ribonucleases G and E [Butyrivibrio crossotus DSM 2876]
 gi|292810430|gb|EFF69635.1| ribonucleases G and E [Butyrivibrio crossotus DSM 2876]
          Length = 386

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 179/388 (46%), Gaps = 14/388 (3%)

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155
            + ++  + +D    ++ +  +     +  I          +I SA  ++   +      
Sbjct: 10  REKNTAVLFEDGKETEIRVIEEE-GSILNNIYVGRVNKVVPNINSAFVEISKGIICYLPI 68

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215
           + E V    ++            I+LVQ+VK+    K   VT  L+++G+Y  +  +   
Sbjct: 69  NEEHVIFLNRKNTDKVCQ---GDIVLVQVVKDAIKTKRPMVTCKLNISGKYVAISFDNKG 125

Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275
              +S+KIT+      LK + +        G I+RT        +I  +   L+  ++++
Sbjct: 126 IIGVSKKITDSRRIAELKTLLKEYATD-EYGFIVRTEAEHADNKDICDEALKLVNEFEDI 184

Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335
             ++    A  L+ + GN +   +  +  +   E+I    + Y    D           +
Sbjct: 185 VRISSMRPAFTLIKKGGNSVDDMVSSMKLRKEDEVITDIPEIYEALSD-------KEYTV 237

Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHC 394
               +    +     IE  ++      V L   GY++I QTEAL  IDVN+G+   ++  
Sbjct: 238 SLYQDTMISLKTLYNIEKIINDALSKYVWLKRGGYLVIEQTEALTVIDVNTGKYDGKDKD 297

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
            EDT L+ N+EAAEE+ RQLRLR+++G++VVDFI+M++  N + +  +L   LKKD  + 
Sbjct: 298 REDTFLKINMEAAEEVERQLRLRNISGIVVVDFINMKDD-NIKILTDELCTQLKKDIVKC 356

Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTK 482
           +    +  GL+E++RQ+IR S++E  TK
Sbjct: 357 KYVDYTKLGLVEITRQKIRRSLIEYFTK 384



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           K++I     + T  V+  D +  E+    E +  I  NIY+ +V +V P++ +AFV+  
Sbjct: 2  KKLVITGYREKNT-AVLFEDGKETEIRV-IEEEGSILNNIYVGRVNKVVPNINSAFVEIS 59

Query: 63 GNRHGFLPFLEIH 75
               +LP  E H
Sbjct: 60 KGIICYLPINEEH 72


>gi|195953000|ref|YP_002121290.1| RNA binding S1 domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932612|gb|ACG57312.1| RNA binding S1 domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 384

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 145/307 (47%), Gaps = 9/307 (2%)

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
            K    ++VQ+ KE    KGA +TT LS  G+Y +        +T    + +   + +  
Sbjct: 75  YKIGDYVVVQVKKEPSKFKGAKLTTKLSFKGKYIIYYEADKSVKTS--HLFDENFKSDYI 132

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           +    L       VI+RT   +     I ++ E+  +    +R+++  ++    +  +  
Sbjct: 133 DKVYRLLREKE-SVIIRTQAKNVDISRIGQELEFYRKKAKLIRDISHKAIMQ--LEPKEP 189

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
                I+D        ++   +         +          V    D   +     +E 
Sbjct: 190 CYVSMIKDYVGGIEKIVVSDIKVYNNIVGFILSN---DLNINVEMIIDKESLENLYEVEK 246

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            ++ L    V L S G+++I +TEA+ +IDVNSG++T + CIE ++  TNLEAA+EI RQ
Sbjct: 247 HINRLLSKYVWLESGGFLVIEETEAMTTIDVNSGKNTCD-CIESSSYSTNLEAAKEIPRQ 305

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           ++LR++ G+I++DFI M+++ + + V   LK    KD  +  V   +  GL+E++R++  
Sbjct: 306 IKLRNIGGIIMIDFIFMKDQVHRKEVLDVLKNGFSKDNVQTTVYGYTALGLMEIARKKTG 365

Query: 474 SSVLEST 480
            S+ ++ 
Sbjct: 366 RSLFQTI 372



 Score = 44.2 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 69/195 (35%), Gaps = 17/195 (8%)

Query: 19  VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78
           + + N + ++  ++ +  +   +I+L K+  +   ++  FVD G  + G+LPF E     
Sbjct: 16  LFKSNELLDIKVDNLNDPEYSSSIFLGKIKSIANGVEGYFVDIGLKKDGYLPFKE----- 70

Query: 79  YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138
                +D++  + +  + Q   E  +        T  +      +   A+ S +T     
Sbjct: 71  -----ADKEYKIGDYVVVQVKKE-PSKFKGAKLTTKLSFKGKYIIYYEADKSVKTSHLFD 124

Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE------VIKNRQILLVQIVKEERGNK 192
            +  +D +  V  +       + +   +   I          + +  L+  I  +     
Sbjct: 125 ENFKSDYIDKVYRLLREKESVIIRTQAKNVDISRIGQELEFYRKKAKLIRDISHKAIMQL 184

Query: 193 GAAVTTYLSLAGRYS 207
                 Y+S+   Y 
Sbjct: 185 EPKEPCYVSMIKDYV 199


>gi|213420630|ref|ZP_03353696.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi
          str. E01-6750]
          Length = 238

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +    ++E+  E E ++ I GNIY  +V+RV P +QAAFVD
Sbjct: 1  MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|330955428|gb|EGH55688.1| ribonuclease E [Pseudomonas syringae Cit 7]
          Length = 351

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 118/279 (42%), Gaps = 1/279 (0%)

Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
           +DFIDM   KN R+VE+K++ESL+ DRARVQ+G IS FGLLEMSRQR+R S+ ES+  VC
Sbjct: 1   IDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVC 60

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544
             C G G IR   S++L+ILR +EE  L+     +       V  +LLN+KR +I + E 
Sbjct: 61  PRCNGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIEL 120

Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           R    I ++   +L    F +++        ++       + A +  + I  +      L
Sbjct: 121 RTRARIIILPNDQLETPHFEVQRLRDDSPEAHSSQTSYEIAAAAAEVEEIAPLAAATRTL 180

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
              ++ +++       +                          G+V  + S+    ++  
Sbjct: 181 VRQEA-AVKTAPARANAPVPVEAAAPAATPAPAPAAHEPSLFKGLVKSLVSLFATKEEPV 239

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              +    +       N                   E +
Sbjct: 240 APVVVEKPVAEQRPARNEERRNGRQQSRGRNNRRDEERK 278


>gi|167470808|ref|ZP_02335512.1| ribonuclease E [Yersinia pestis FV-1]
          Length = 238

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 53/75 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  
Sbjct: 1  MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60

Query: 65 RHGFLPFLEIHPDYY 79
          RHGFLP  EI  +Y+
Sbjct: 61 RHGFLPLKEISREYF 75



 Score = 86.2 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 97  QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151
           +    A+ D     D+ I +    ++ A I        E S+ +A  D  +         
Sbjct: 9   EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                          +  I++V++  Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP
Sbjct: 69  EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           N  +   ISR+I      + LKE    L++P GMG+I+RTAG  ++   ++ D  + ++ 
Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSSDALQWDLSFRLKH 187

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
           WD +++ A    AP L+++E N+I RA RD    DI EI++   K   
Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLE 235


>gi|288962444|ref|YP_003452739.1| ribonuclease G [Azospirillum sp. B510]
 gi|288914710|dbj|BAI76195.1| ribonuclease G [Azospirillum sp. B510]
          Length = 411

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 153/336 (45%), Gaps = 21/336 (6%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               SP   P+   +   I  +++  Q +LVQ+  +  G+KG ++T  ++L GR+ V  P
Sbjct: 80  DDDSSPSRPPRPGAKPAPIGALLRTGQPVLVQVKADAVGSKGPSLTMDITLPGRFLVHAP 139

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
              +   +S+++ +  +R  L      L    G G I+R   A  +   +  + E L   
Sbjct: 140 -LGRDIAVSKRLGSGPERAALAHRIEALVT--GAGWIVRAGAAQVSDALLAAESEALHLQ 196

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY-----------RE 320
           W  +R+ A    AP  ++   +   RA+ +      + I+V+                  
Sbjct: 197 WRAIRDEARAGSAPRPLHPGPDAPTRALIEQGAAVPATILVNDPAPPGRIAVGDGPLLSG 256

Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            + +     P     +  + +   +F    ++  +  L    V LP  G ++I +TEAL 
Sbjct: 257 LRGWCGHHAPDLLPRLDGHRETQRLFDLRDLDSAIAGLLDIRVPLPLGGSLVIERTEALT 316

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
            IDVN+G            L+ NL+AA EIARQLRLR++ G++VVDF++M  + +   V 
Sbjct: 317 VIDVNAG-------ERGNPLEVNLDAAAEIARQLRLRNVGGIVVVDFVNMRGRGDAERVL 369

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
             L +++  D  + Q+  +S  GL+E++R R  + +
Sbjct: 370 AALSQAVDSDPVQTQIYGMSKLGLVELTRARRGTPL 405



 Score = 75.8 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 1  MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+  ++L+D      TR  VL D R+ +L  +   +  + G I L +V R+   L  AF+
Sbjct: 1  MSRLELLVDRDGPL-TRAAVLADGRLTDLYIDHADRPSLLGAIILGRVERIATGLNGAFI 59

Query: 60 DYGGNRHGFLPFLEI 74
          D G    G LP  ++
Sbjct: 60 DLGNGLPGLLPAADV 74


>gi|149913556|ref|ZP_01902089.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. AzwK-3b]
 gi|149812676|gb|EDM72505.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. AzwK-3b]
          Length = 341

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 126/305 (41%), Gaps = 38/305 (12%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +  Q +LVQ+  +    K   VT+ L    RY+++ P+   G  +SR I +   R  L  
Sbjct: 73  RPGQAVLVQVTGQPEPGKALPVTSRLLYKSRYAIVTPDAP-GLNVSRSIRDEDRRDALLA 131

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           IA      A MG+ILR++ A  +  +I  D   +  L   V E A  +    L   +G  
Sbjct: 132 IAHAEMGDAEMGLILRSSCAEASDDDIADDIRAMHDLAQAVAEDAEGAGPEKLTEGDGP- 190

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
                                           LL       V + +     F   G+  Q
Sbjct: 191 -------------------------------HLLAWREWTDVAELDTTPGSFAAHGVLDQ 219

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           +++L Q +  L     ++I  T AL+++DVN+G             + NL AA+E+ R L
Sbjct: 220 IEALRQPDCPLSGGASMVIEPTRALIAVDVNTGGDMSPAS----GFKANLAAAKELPRHL 275

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR L G IV+D   M  KK+ R  E  L+ + + DR    +   +  G  E+ R+R R 
Sbjct: 276 RLRGLGGQIVIDPAPM-PKKDRRQFETTLRAAFRADRVETALVGWTPLGHFELQRKRDRI 334

Query: 475 SVLES 479
           ++ E 
Sbjct: 335 ALSEV 339


>gi|289676059|ref|ZP_06496949.1| ribonuclease G [Pseudomonas syringae pv. syringae FF5]
          Length = 144

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +   E+RV V+ +  ++E+  E   ++ I GNIY  KV RV P +QAAF+D
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  F+   EI
Sbjct: 60 IGLDRAAFIHASEI 73


>gi|159043533|ref|YP_001532327.1| ribonuclease [Dinoroseobacter shibae DFL 12]
 gi|157911293|gb|ABV92726.1| ribonuclease [Dinoroseobacter shibae DFL 12]
          Length = 347

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 126/306 (41%), Gaps = 36/306 (11%)

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
            +    LLVQ+       K   VT  +    RY ++ PN   G  ++R I     R +L+
Sbjct: 75  RRPGDRLLVQVSGVAEPGKAVPVTDRVLYKSRYVIVTPNAP-GVNVARSIREEERRASLR 133

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
            +A  +   A  G+ILR+A A   +  ++ D    + L   V+          L+ +  +
Sbjct: 134 LLAEDVLDGADTGLILRSAAAQADEDTLREDISETLALAMAVQ-ADAEGEGSALLLDAPD 192

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
               A RD       EI+                                  F R G+  
Sbjct: 193 AHHLAWRDWSDPVPDEIVTDP-----------------------------GGFERHGVLD 223

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            L +L   +V+L     V I  T ALV++DVN+GR           L+ NL AA  + RQ
Sbjct: 224 ALHALVDPQVSLSGGASVFIEPTRALVAVDVNTGRDVSPA----AGLKANLAAARALPRQ 279

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G IVVDF  M  KK+ + +E+ L+ + + D     +   +  G  E+ R+R R
Sbjct: 280 LRLRGLGGQIVVDFAPM-PKKDRKQLEQSLRAAFRADPVETSLVGWTPLGHYELQRKRDR 338

Query: 474 SSVLES 479
           +S+  S
Sbjct: 339 ASLRRS 344


>gi|226329356|ref|ZP_03804874.1| hypothetical protein PROPEN_03261 [Proteus penneri ATCC 35198]
 gi|225202542|gb|EEG84896.1| hypothetical protein PROPEN_03261 [Proteus penneri ATCC 35198]
          Length = 88

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L++ +   ETRV  +R   ++E+  E E K+ I GNIY  +V+RV P +QAAF+D
Sbjct: 1  MTAELLVNVT-PSETRVAYIRGGILQEIHVEREAKRGIVGNIYKGRVSRVLPGMQAAFID 59

Query: 61 YGGNRHGFLPFLEIHP 76
           G ++  FL   +I P
Sbjct: 60 IGLDKAAFLHASDIMP 75


>gi|99078528|ref|YP_611786.1| ribonuclease [Ruegeria sp. TM1040]
 gi|99035666|gb|ABF62524.1| ribonuclease Rne/Rng family [Ruegeria sp. TM1040]
          Length = 340

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 114/306 (37%), Gaps = 39/306 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q+LLVQ+       K   VT  L    RY+++ P+   G  ISR I +  +R  L EI
Sbjct: 74  PGQMLLVQVTGYAEPGKALPVTQKLLFKSRYAIVTPDAP-GLNISRSIRDDDERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A         G+ILR+  A     EI  D   ++     V E + N              
Sbjct: 133 AHSEMDGVEYGLILRSVCAGADPDEIAEDIAAMVTAARQVLEDSSNQSEVL--------- 183

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                      D   L            E     F R G+   L
Sbjct: 184 ------------------------HEGDAPHLQAWREWTAPADIEQEPGGFERCGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++L   ++ +    Y+ +  T ALV++DVN+G  T         ++ N+  A  + R LR
Sbjct: 220 EALQSGKIAIGGGAYLYVEPTRALVAVDVNTGSDTSLA----AGIKANMACARNLPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
              L G IV+D   M  KK+ R+ E  L+ + K D     +   +  G  E+ R+R R  
Sbjct: 276 CLGLGGQIVIDAAPM-PKKDRRAFETALRTAFKSDPEETTLAGWTTLGHFELQRKRARLP 334

Query: 476 VLESTT 481
           + E  +
Sbjct: 335 LSEILS 340


>gi|114569683|ref|YP_756363.1| RNA-binding S1 domain-containing protein [Maricaulis maris MCS10]
 gi|114340145|gb|ABI65425.1| RNA binding S1 domain protein [Maricaulis maris MCS10]
          Length = 357

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 7/257 (2%)

Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
           +        +  +  ++L     R     E          +E   D   + +V +P  G 
Sbjct: 107 VDVEPGEAPDCLEPAEILAQRLVRTFGDAEAQWADETDFDLEAAFDEALEPQVAIPGGGS 166

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           + I  T A+ +IDV++     +      A+Q N  AA+E ARQ R+R + G++ +DF+ M
Sbjct: 167 LYIETTRAMTTIDVDADGRKGQGNAAQLAVQLNNSAAKEAARQARMRGIGGILAIDFVHM 226

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
             + + ++VE+ L+ + ++DRA+V V  +S F + E++RQR   ++ E   +      G 
Sbjct: 227 RGQPDRKAVEQTLRGAFRRDRAKVDVAPLSQFCIGEVARQRRGRTLSEIMLES----DGR 282

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
             +    + AL+ LR ++       +    +    +V  +L +   A       R G   
Sbjct: 283 PTV---ETAALTALRRLDAEARSDRSRKQRLTVGPEVFNWLDSDTIAWRAALTDRIGARF 339

Query: 551 NVVIGIELADKLFYIEK 567
            +    ELA     + +
Sbjct: 340 ELTENPELARNACRVGR 356



 Score = 88.5 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFES---EHKKQIKGNIYLAKVTRVEPSLQAA 57
          M  ++LI+ +   ETR  V  + R+ EL  +      ++ I+G IY  +V RVEP+L AA
Sbjct: 1  MNRQILIEENIG-ETRAAVAENGRIVELFLDRWSEAGQRVIEGEIYRGRVRRVEPALNAA 59

Query: 58 FVDYGGNRHGFLPF 71
          FVD G    GFLPF
Sbjct: 60 FVDLGVGEEGFLPF 73


>gi|330891479|gb|EGH24140.1| ribonuclease E [Pseudomonas syringae pv. mori str. 301020]
          Length = 76

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 55/76 (72%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 1  MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60

Query: 65 RHGFLPFLEIHPDYYQ 80
          RHGFLP  EI  +Y++
Sbjct: 61 RHGFLPLKEISREYFK 76


>gi|167767404|ref|ZP_02439457.1| hypothetical protein CLOSS21_01923 [Clostridium sp. SS2/1]
 gi|167711379|gb|EDS21958.1| hypothetical protein CLOSS21_01923 [Clostridium sp. SS2/1]
          Length = 379

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 9/316 (2%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
                 K    +LVQI KE    K   ++  + L G Y VL  +      IS KI     
Sbjct: 71  MRHRQYKAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKL-SVGISNKIHQKEK 129

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           ++ LKE+A  L V    G ILRT  A   K ++  + + L   +  +        APHLV
Sbjct: 130 KQELKEMAETL-VTQEYGFILRTEAAKADKEDVLMEADQLSAKYHEIVSKRQYRKAPHLV 188

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
               + ++  + D+    I  I+   E+   + K+    +                I  R
Sbjct: 189 DTNYDALEVLVHDIKPGSIDRIVTDQEEVGEQLKEKGYEV-------FLCSYMAGDIERR 241

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
                 L  + + ++ + S G++ I QTEA+  IDVN+G+S  +   E    + NLEAA+
Sbjct: 242 YRFRHYLSEVFKRKIFMKSGGFLYIEQTEAMAVIDVNTGKSIGKKNQEAHIKKINLEAAK 301

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           E ARQ+RLR+L+G+I++DFIDM+ K + + + + ++  L  D  +     I+  G++E++
Sbjct: 302 EAARQIRLRNLSGIIMIDFIDMKSKDDEKELLQVMQHYLNGDSKKAVAVDITKLGIMEIT 361

Query: 469 RQRIRSSVLESTTKVC 484
           R++ ++ +    +   
Sbjct: 362 RKKEKNPIFRQISIDI 377



 Score = 57.7 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 19  VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78
           +L+D    E    SE  K   GNIY+  V  V  ++  AFV++  +  GFL     H  Y
Sbjct: 19  LLKDGHPVEFQCLSEKNKVDIGNIYIGVVKNVVKNINGAFVEFDQDEIGFLSMR--HRQY 76

Query: 79  YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138
                +  + L++    A  +   +  D            S +    I+N   + E++  
Sbjct: 77  ----KAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKLSVGISNKIHQKEKKQE 132

Query: 139 ISANND 144
           +    +
Sbjct: 133 LKEMAE 138


>gi|291559280|emb|CBL38080.1| Ribonucleases G and E [butyrate-producing bacterium SSC/2]
          Length = 379

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 9/316 (2%)

Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228
                 K    +LVQI KE    K   ++  + L G Y VL  +      IS KI     
Sbjct: 71  MRHRQYKAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKL-SVGISNKIHQKEK 129

Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288
           ++ LKE+A  L V    G ILRT  A   K ++  + + L   +  +        APHLV
Sbjct: 130 KQELKEMAETL-VTQEYGFILRTEAAKADKEDVLMEADQLSAKYHEIVSKRQYRKAPHLV 188

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348
               + ++  + D+    I  I+   E+   + K+    +                I  R
Sbjct: 189 DTNYDALEVLVHDIKPGSIDRIVTDQEEVGEQLKEKGYEV-------FLCSYMAGDIERR 241

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
                 L  + + ++ + S G++ I QTEA+  IDVN+G+S  +   E    + NLEAA+
Sbjct: 242 YRFRHYLSEVFKRKIFMKSGGFLYIEQTEAMAVIDVNTGKSIGKKNQEAHIKKINLEAAK 301

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           E ARQ+RLR+L+G+I++DFIDM+ K + + + + ++  L  D  +     I+  G++E++
Sbjct: 302 EAARQIRLRNLSGIIMIDFIDMKSKDDEKELLQVMQHYLNGDSKKAVAVDITKLGIMEIT 361

Query: 469 RQRIRSSVLESTTKVC 484
           R++ ++ +    +   
Sbjct: 362 RKKEKNPIFRQISIDI 377



 Score = 58.8 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 19  VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78
           +L+D    E    SE  K   GNIY+  V  V  ++  AFV++  +  GFL     H  Y
Sbjct: 19  LLKDGHPVEFQCVSEKNKVDIGNIYIGVVKNVVKNINGAFVEFDQDEIGFLSMR--HRQY 76

Query: 79  YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138
                +  + L++    A  +   +  D            S +    I+N   + E++  
Sbjct: 77  ----KAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKLSVGISNKIHQKEKKQE 132

Query: 139 ISANND 144
           +    +
Sbjct: 133 LKEMAE 138


>gi|303280908|ref|XP_003059746.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458401|gb|EEH55698.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1060

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 21/339 (6%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
            +    E           + E  +    ++VQ+ +   G+KG  VT   +L GR  VL P
Sbjct: 524 KEHVEREGRDGSLVGGNRVTEHWRPGMPVVVQVTRLGAGHKGPRVTARPTLPGRNVVLCP 583

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
           +  +G  +SRK+  P       +   G   P    +I+RT  A  TK  +++D   L   
Sbjct: 584 D-GEGVYVSRKLMGPARAYV--KAIGGAVAPVDCALIMRTEAAGVTKDVLEKDITSLADD 640

Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRA----------IRDLYCKDISEIIVSGEKGYREA 321
           W+ VR  A ++VA         + +R           +RDL+ + I+ + V     Y   
Sbjct: 641 WEEVRTRASSAVAAAGAQGRSPVPRRLLDAATVEQVLVRDLFGERIAALTVDTVAAYDNI 700

Query: 322 KDFMKLLMPSYARIVR--QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR----GYVIINQ 375
              ++    S   I R   +     +    G+     S  +  V+L        +V+I  
Sbjct: 701 VADLRRTGTSEENIARVKLHAGSEDVLSVLGVADVAASATEERVSLRDDSLPGAHVVIQA 760

Query: 376 TEALVSIDVNSGR--STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433
           TEAL ++DVN+GR     +   E  AL+ N+ AA E+A QLRLRD+ GL++VDFIDM  +
Sbjct: 761 TEALTAVDVNAGRAAFINDSDNESVALRVNVAAATELAAQLRLRDIGGLVMVDFIDMSSR 820

Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
            + + VE     + K DRA+V    IS  G++E++R+R+
Sbjct: 821 AHRKEVEAAFLRAAKSDRAQVTFLPISPLGVMEVARERL 859



 Score = 54.2 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQ---IKGNIYLAKVTRVEPSLQAAFVD 60
            RV ++ +NR+ EL  E           G++YL  V +V   +Q   VD
Sbjct: 271 VRVGIVEENRLVELWHERAAVPGEGMRVGDVYLGVVAKVISGMQGVLVD 319


>gi|255599060|ref|XP_002537143.1| conserved hypothetical protein [Ricinus communis]
 gi|223517337|gb|EEF25238.1| conserved hypothetical protein [Ricinus communis]
          Length = 97

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M+ ++LI+ +  +ETRV VL    V+EL  E      + GNIY  +V RV P +Q+AFV+
Sbjct: 1  MSEEILINVT-PQETRVAVLEQGVVQELHIERTSSLGLVGNIYKGEVCRVLPGMQSAFVE 59

Query: 61 YGGNRHGFLPFLEI 74
           G +R  FL   ++
Sbjct: 60 VGLSRAAFLHIADL 73


>gi|254462595|ref|ZP_05076011.1| ribonuclease, Rne/Rng family [Rhodobacterales bacterium HTCC2083]
 gi|206679184|gb|EDZ43671.1| ribonuclease, Rne/Rng family [Rhodobacteraceae bacterium HTCC2083]
          Length = 340

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 109/305 (35%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               LLVQ+       K   V   +    RY ++ PN   G  +SR I +   R+ +  +
Sbjct: 74  PGDELLVQVTGYADEGKAIPVQNRVLFKSRYVIVTPNAP-GINVSRSIRDDERREEILAV 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                     G+I+R++       +I  D   ++ L D V           +  ++ +L+
Sbjct: 133 LHDTVENVPHGIIMRSSCEHADAEDIADDLLSMLGLADQVLNDDGTGGEKLVEGDKPHLL 192

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                                     +       F    +   +
Sbjct: 193 ---------------------------------AWRDWVEPAEIITEDGGFETHAVLDAI 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D+L      L    +  +  T ALV++DVN+G+ T          + N   A+ + R+LR
Sbjct: 220 DALESPRFELGGGAFAYVEPTRALVAVDVNTGKDTSMT----AGTKANFALAKGLPRELR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G IV+D   M  KK+ R  E  LK +L+ D         +  G +E+ R+R R  
Sbjct: 276 LRGLGGQIVLDLAPM-PKKDRRGFESALKAALRNDSIETVFVGWTPLGHVELQRKRARLP 334

Query: 476 VLEST 480
           ++E  
Sbjct: 335 LVELL 339


>gi|254475670|ref|ZP_05089056.1| ribonuclease, Rne/Rng family [Ruegeria sp. R11]
 gi|214029913|gb|EEB70748.1| ribonuclease, Rne/Rng family [Ruegeria sp. R11]
          Length = 340

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 120/306 (39%), Gaps = 39/306 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   VT  L    RY+++ P    G  ISR I +  +R  L EI
Sbjct: 74  PGQELLVQLTGYADTGKALPVTQKLLFKSRYAIVTPEAP-GLNISRSIRDEDERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A G    +  G+ILR+A       +I+ D   ++ L D V     +        +  +L+
Sbjct: 133 AHGAMGDSSYGLILRSACDGADAEDIEEDILAMLALADQVLHDEGSGPEVLAEGDTPHLL 192

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A RD       E                                    F   G+   L
Sbjct: 193 --AWRDWTDPADVE-------------------------------REPGGFEHHGVLETL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D +      L    ++ I  T ALV++DVN+G  T          + N+  A+ +AR LR
Sbjct: 220 DQVKTIREPLSGGAFLFIEPTRALVAVDVNTGSDTSLA----AGTKANMACAKGLARALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G IV+D   M  KK+ R+ E  L+ S + D     +   +N G  E+ R+R R  
Sbjct: 276 LRGLGGQIVIDLAPM-PKKDRRAFESALRASFRTDSEETTLVGWTNLGHFELQRKRGRVP 334

Query: 476 VLESTT 481
           + E  +
Sbjct: 335 LSEVLS 340


>gi|307250034|ref|ZP_07532001.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str.
          M62]
 gi|306857932|gb|EFM90021.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str.
          M62]
          Length = 219

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63
          ++L++ +   ETRV ++ +  ++EL  E E K+ I GNIY  +VTRV P +Q+AFVD G 
Sbjct: 5  ELLVNVT-PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63

Query: 64 NRHGFLPFLEIHP 76
           +  FL   +I  
Sbjct: 64 EKAAFLHASDIVS 76


>gi|144897401|emb|CAM74265.1| Ribonucleases G and E [Magnetospirillum gryphiswaldense MSR-1]
          Length = 435

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 149/393 (37%), Gaps = 34/393 (8%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               +LVQ+  + +G KGA +TT + L+GR+    P       +S       DR+ + + 
Sbjct: 73  QGASVLVQVKADAQGLKGAVLTTEVVLSGRFIAYTPMRP---GLSVPRKLSDDRRAILQE 129

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                +    G++ R    +  +  ++ D   L   W  +++    + AP +++    L 
Sbjct: 130 RLACMMHDDEGIVARLHAVNADEPALEADLTALRGQWQQMQQGQREARAPAVLWRPDPL- 188

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH--PIFFRSGIEV 353
                         ++       R   D       + AR     E     P+F     E 
Sbjct: 189 ------------DRMLSDHPGVSRVLVDDDLAFAQAQARFGGLVERHRGGPVFDLYDTED 236

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            + +     V LP  G V    T AL +IDV+SG            ++ N +A   IARQ
Sbjct: 237 AVAACLAPVVPLPCGGRVTFQGTAALTAIDVDSG--------PAQPIEANQQAVSVIARQ 288

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR++AG I+VDF+    K     +   LK+S+  D     V   +  GL+EM+R+R  
Sbjct: 289 LRLRNIAGQIIVDFVSAGGKGALIKLIAALKQSISSDPTATHVIGATALGLVEMTRERRG 348

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+ +   +          + S  + AL  LR V      +    + +    DV   L  
Sbjct: 349 PSLSDLMVENVA-------LLSPQAAALRALRLVLAEAAHHPGRALTLTVAPDVAAILHG 401

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
           Q    + E EAR G    +      A     + 
Sbjct: 402 QT-GALAEIEARLGRKPMIRAEEGRARDDIAVT 433



 Score = 67.7 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          MA+++L  +    E+R+ ++RD R+ +L         + G + L +V  + P + A FVD
Sbjct: 1  MASEIL-YSWGPGESRLALVRDGRLVDLAVIRPS--LLAGAVVLGRVVELAPKMGAIFVD 57

Query: 61 YGGNRHGFL 69
           G ++ GFL
Sbjct: 58 IGQDKPGFL 66


>gi|255087102|ref|XP_002505474.1| carbohydrate-binding module family 20 protein [Micromonas sp.
           RCC299]
 gi|226520744|gb|ACO66732.1| carbohydrate-binding module family 20 protein [Micromonas sp.
           RCC299]
          Length = 1117

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 96/321 (29%), Positives = 157/321 (48%), Gaps = 21/321 (6%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           + E  +    ++VQ+ +   G+KG  VT   +L GR  VL P+  +G  +SRK+      
Sbjct: 666 VVEHWRPGMPVVVQVTRLGSGHKGPRVTARPTLPGRNVVLCPD-GEGVYVSRKLAGQARA 724

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
               +      VP+   +I+RT  A  +K  ++ D   L   WD VRE A  +V    + 
Sbjct: 725 YV--KAVGATVVPSDCALIMRTEAAGVSKEVLEMDIRSLADDWDVVRERARAAVEAAGLQ 782

Query: 290 EEGNLIKRA----------IRDLYCKDISEIIVSGEKGYREAKDFMKLLM--PSYARIVR 337
                 +R           +RDL+ + I+++ V     Y      ++         R VR
Sbjct: 783 GRSPFPRRLLDAATVEQILVRDLFGERIAKLTVDSMSSYEAIVSDLRRTGATDEIVRRVR 842

Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR----GYVIINQTEALVSIDVNSGR--STR 391
            +  P  +F   G+   ++S     V L        +V+I QTEAL +IDVN+GR     
Sbjct: 843 LHTGPENVFAFLGVADAVESTADERVWLKDETLPGAHVVIQQTEALTAIDVNAGRAAFIN 902

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           +   E  A Q N+ AA+EIA QLRLRD+ GL+++D+IDM ++ + + VE    E+ + DR
Sbjct: 903 DSDNESVAAQVNVAAAKEIALQLRLRDIGGLVMIDYIDMHDRAHRKEVETAFLEAAQNDR 962

Query: 452 ARVQVGAISNFGLLEMSRQRI 472
           A++    IS  G++E++R+R+
Sbjct: 963 AQLTFLPISPLGVMEVARERL 983



 Score = 57.3 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 4   KMLIDASHVEE--TRVVVLRDNRVEELDFESEHKKQI---KGNIYLAKVTRVEPSLQAAF 58
           +++ +A+  EE   RV ++ ++R+ EL  E   +       G++YL  V +V   +Q   
Sbjct: 345 ELVFNAADKEEHGVRVGIIEEDRLVELWHEHAAEPGKGMRVGDVYLGVVAKVISGMQGVL 404

Query: 59  VDY 61
           VD 
Sbjct: 405 VDV 407


>gi|47097731|ref|ZP_00235231.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47013895|gb|EAL04928.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 315

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 20/333 (6%)

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
            V     +I+R+     TK ++++        +  + + A     P L+    + I  + 
Sbjct: 1   MVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGILNST 60

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359
           +            +  +   +  +F K+L   Y       +    +F   GI+ Q+D L 
Sbjct: 61  KQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQMDRLA 114

Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419
           +  V L +   + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+RLR++
Sbjct: 115 RPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIRLRNM 174

Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479
           +G+I+VDFI    +     +   L+   +++    QV A+S  GLL+++R++ + S LE+
Sbjct: 175 SGMILVDFIGGISEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQSFLET 234

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LNQKRA 537
           TT  C  C   G++ S+ ++A  + R +   ++Q   ++I + T  DV+     LN    
Sbjct: 235 TTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLNTLSN 293

Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +++E         V    +    + I +   
Sbjct: 294 APIDWE---------VADERV--PFYQIARVEN 315


>gi|163747241|ref|ZP_02154596.1| ribonuclease G, putative [Oceanibulbus indolifex HEL-45]
 gi|161379516|gb|EDQ03930.1| ribonuclease G, putative [Oceanibulbus indolifex HEL-45]
          Length = 344

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 118/305 (38%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  L    RY+++ P+   G  ISR I +  +R  L EI
Sbjct: 74  PGQTILVQVSGHAEPGKAIPVTNKLLFKSRYAIVTPDAP-GLNISRSIKDEQERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      A +G+ILR++ A     +I  D   +M L D                      
Sbjct: 133 AHEAAGGAELGLILRSSCAGADADDIAEDIANMMALAD---------------------- 170

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                 +   D  E+ V  E       D   LL         +       F   G+  +L
Sbjct: 171 -----TVANDDAQEMDVLSEG------DGPHLLAWRDWVAPAEIVTEAGSFAEHGVLEEL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L   +V L +   + +  T ALV++DVN+G            ++ N+  A  + R LR
Sbjct: 220 DRLTSAQVPLGNGASIYVEPTRALVAVDVNTGSDASLA----AGVKANMACARVLPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I +D   M  KK+ R  E  L+ + + D     +   +  G  E+ R+R R  
Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRIFESALRAAFRADEVDTTLVGWTPLGHYELQRKRARPV 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LAEVL 339


>gi|167746504|ref|ZP_02418631.1| hypothetical protein ANACAC_01214 [Anaerostipes caccae DSM 14662]
 gi|167653464|gb|EDR97593.1| hypothetical protein ANACAC_01214 [Anaerostipes caccae DSM 14662]
          Length = 377

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 170/389 (43%), Gaps = 16/389 (4%)

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
           + E  I +     V+  +  G+    +    EE + + N  +   +  + + +   V   
Sbjct: 1   MNEVIITRLGRHIVSAWLEDGEFAEFSSEPAEEGSLVGNIYKARVKNIVGNIHGAFVEID 60

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209
           E      P D  +K  +       +KN + +L+Q+ K+    K    T  + L G Y VL
Sbjct: 61  EGRLCFYPLDERRKPGK-------LKNEEEILIQVKKDGTDKKEPLATENIELTGEYLVL 113

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
             +      IS KI +   +++LK            G I+RT   +  + +I R+   L 
Sbjct: 114 SSDKP-FVGISGKIRDKEKKEDLKRFVSAFVTG-EYGFIVRTEAENADQDKIGREAASLA 171

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
             +  +RE         L+    +   R +  L       II   E         ++   
Sbjct: 172 ERYVQIREKQQYMKPCRLLATNQSFSSRYVFGLSPSRAERIISDDEVI-------LREAE 224

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
            +  ++ R       I     +   L+++  T V L S G++II +TEA+  +DVN+G+S
Sbjct: 225 ENGYQVRRMDRQDQSIERGYRLSHALEAVFHTRVWLRSGGFLIIERTEAMTVVDVNTGKS 284

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
                 E   ++ N EAA E ARQ+RLR+L+G+I+VDFIDM+EK+    +   ++  L +
Sbjct: 285 IGRGQKEGHIIKINREAARETARQIRLRNLSGIILVDFIDMKEKEEEGRLLSYMQTMLNR 344

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           D  +     ++  GL+E++R++IR  + +
Sbjct: 345 DSKKAVAVDMTKLGLMEITRKKIRRPLEK 373



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 72/253 (28%), Gaps = 17/253 (6%)

Query: 18  VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
             L D    E   E   +  + GNIY A+V  +  ++  AFV+    R  F P  E    
Sbjct: 16  AWLEDGEFAEFSSEPAEEGSLVGNIYKARVKNIVGNIHGAFVEIDEGRLCFYPLDE---- 71

Query: 78  YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS----LEEVAPIANFSQET 133
             + P      L  E  I     +   D                  L    P    S + 
Sbjct: 72  -RRKPG----KLKNEEEILIQVKKDGTDKKEPLATENIELTGEYLVLSSDKPFVGISGKI 126

Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193
            ++         VS     + G       +   Q  I     +     VQI ++++  K 
Sbjct: 127 RDKEKKEDLKRFVSAFVTGEYGFIVRTEAENADQDKIGREAASLAERYVQIREKQQYMKP 186

Query: 194 AA-VTTYLSLAGRYS-VLMPNTSKGETIS--RKITNPVDRKNLKEIARGLEVPAGMGVIL 249
              + T  S + RY   L P+ ++         +    +           +     G  L
Sbjct: 187 CRLLATNQSFSSRYVFGLSPSRAERIISDDEVILREAEENGYQVRRMDRQDQSIERGYRL 246

Query: 250 RTAGASRTKIEIK 262
             A  +     + 
Sbjct: 247 SHALEAVFHTRVW 259


>gi|259415610|ref|ZP_05739531.1| ribonuclease, Rne/Rng family [Silicibacter sp. TrichCH4B]
 gi|259348840|gb|EEW60602.1| ribonuclease, Rne/Rng family [Silicibacter sp. TrichCH4B]
          Length = 340

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 122/306 (39%), Gaps = 39/306 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q+LLVQ+       K   VT  L    RY+++ P+   G  ISR I +  +R  L EI
Sbjct: 74  PGQMLLVQVTGYAEPGKALPVTQKLLFKSRYAIVTPDAP-GLNISRAIRDEDERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A         G+ILR+  A     +I  D   ++     V E                  
Sbjct: 133 AHTEMDGVDFGLILRSVCAGADPEDIAEDIATMVATARQVLEDP---------------- 176

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                     + SE++  G+  +        L          Q E     F R G+   L
Sbjct: 177 ---------SETSEVLHEGDAPH--------LQAWREWTDPAQIEQDPGGFERCGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           DS+   ++++ +  ++ +  T ALV++DVN+G  T         ++ N+  A  + R LR
Sbjct: 220 DSVRTGKISIGAGAFLYVEPTRALVAVDVNTGSDTSLA----AGVKANMACARALPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
              L G IV+D   M  KK+ R+ E  L+ + K D     +   +  G  E+ R+R R  
Sbjct: 276 CLGLGGQIVIDAAPM-PKKDRRAFESALRAAFKSDPEETTLVGWTTLGHFELQRKRARLP 334

Query: 476 VLESTT 481
           + E  +
Sbjct: 335 LSEILS 340


>gi|90019168|gb|ABD84237.1| ribonucleases G and E-like [Yersinia sp. MH-1]
          Length = 160

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 87/160 (54%)

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           +N+G       +++T   TN+EA + IARQLR+R+L G+I++DFIDM  +++ R V   L
Sbjct: 1   INTGAFVGHRNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSL 60

Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
           +++L KDR +  +   S  GL+EM+R+R R S+       C  C G G ++S  +V   I
Sbjct: 61  EQALSKDRVKTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKSVETVCYEI 120

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           LR +      Y     +V+    V   L +++   + E E
Sbjct: 121 LREIVRVHHAYDTDRFLVYASPAVGEALKSEESHALAEVE 160


>gi|260425264|ref|ZP_05779244.1| ribonuclease, Rne/Rng family [Citreicella sp. SE45]
 gi|260423204|gb|EEX16454.1| ribonuclease, Rne/Rng family [Citreicella sp. SE45]
          Length = 338

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 120/305 (39%), Gaps = 41/305 (13%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               LLVQ+       K   VTT +    RY+++ P    G  +SR+I +   R  L  I
Sbjct: 74  PGDTLLVQVTGFAEPGKAIPVTTRILFKSRYAIVTPGAP-GINVSRQIKDDDLRDELLGI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A  +      G+ILR++ AS    +I  D   + +L   V               EG+  
Sbjct: 133 AHEVMQGED-GLILRSSCASGHPQDIAEDIGAMAQLCAQVMADT---TGGAETLVEGDGP 188

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                  +  D                                 +     F R  +   +
Sbjct: 189 HALAWREWDGD-------------------------------DIDSGAGSFERHSVLDMI 217

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++L    V LP  G + I  T ALV++D+N+G  T         L+ N+ A  E+ RQLR
Sbjct: 218 EALTSPMVPLPGGGSMCIEPTRALVAVDINTGNDTSPA----AGLKANMAALRELPRQLR 273

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G ++VD      KK+ R +E+ L+ + K+D     +   +  GL+E+ R+R R  
Sbjct: 274 LRGLGGQVLVDPAP-APKKDRRQMEQVLRAAFKQDATETILAGWTQLGLMELQRKRERVP 332

Query: 476 VLEST 480
           + E  
Sbjct: 333 LREVL 337


>gi|254464225|ref|ZP_05077636.1| ribonuclease, Rne/Rng family [Rhodobacterales bacterium Y4I]
 gi|206685133|gb|EDZ45615.1| ribonuclease, Rne/Rng family [Rhodobacterales bacterium Y4I]
          Length = 340

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 118/305 (38%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q++LVQ+       K   VT  L    RY+++ P    G  ISR I +  +R  L EI
Sbjct: 74  PGQMILVQVSGYAEPGKAIPVTQKLLFKSRYAIVTPEAP-GLNISRSIRDEEERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A       G G+ILR+A A   + EI  D   +  L   V +                  
Sbjct: 133 AHEEMGETGYGLILRSACAGADREEIAEDVAAMAALAAQVLQD----------------- 175

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                              E       D   LL           E     F R G+   L
Sbjct: 176 ----------------EGAEAEALSEGDTPHLLAWREWAEPADIERDPGGFERLGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D        LP  G++ I  T ALV++DVN+G  T         ++ N+ AA+ + R LR
Sbjct: 220 DIARGIREPLPGGGFLFIEPTRALVAVDVNTGSDTSLA----AGVKANMAAAKTLPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           +R L G IV+D   M  KK+ R  E  L+ + + D     +   ++ G  E+ R+R R +
Sbjct: 276 VRGLGGQIVLDLAPM-PKKDRRGFETALRAAFRADSEETVLAGWTSLGHYELQRKRGRIA 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LSEVL 339


>gi|84683716|ref|ZP_01011619.1| ribonuclease, Rne/Rng family protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668459|gb|EAQ14926.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 341

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 117/301 (38%), Gaps = 38/301 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               LLVQ+       K   V T +    RY+++ P+   G  +SR++ +  +R  L +I
Sbjct: 77  PGTPLLVQVSGWAEAGKAPPVATKVLFKSRYAIVTPDAP-GLNLSRQVRDEDERVRLLDI 135

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A  +   +  G+I+R++        +  D   +  L + V   A     P L+ +  +  
Sbjct: 136 ADAVMEGSPHGLIVRSSAEGADDGAVAEDIAEMRTLAEAVLGDA-QGKQPELLVDGPDAH 194

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A RD    D+                               + +    F   GI   L
Sbjct: 195 LTAWRDWPEPDV-------------------------------FAEAPGAFEEHGIHDLL 223

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D        L    Y  I  T ALV++DVN+G  T         L+ N+  A ++ R LR
Sbjct: 224 DRALAARQPLSGGAYAFIEPTRALVAVDVNTGGDTSLA----AGLKANIALARDLPRLLR 279

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           +R L G I +D   M  KK+  + E+ L+ + K+D     +   +  G  E+ R+R R  
Sbjct: 280 VRGLGGQITLDLAPM-PKKDRAAFEQVLRAAFKRDGTETVLAGWTPLGHFELQRKRDRLP 338

Query: 476 V 476
           V
Sbjct: 339 V 339


>gi|308811302|ref|XP_003082959.1| putative endoribonuclease E (ISS) [Ostreococcus tauri]
 gi|116054837|emb|CAL56914.1| putative endoribonuclease E (ISS) [Ostreococcus tauri]
          Length = 885

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 126/554 (22%), Positives = 219/554 (39%), Gaps = 87/554 (15%)

Query: 4   KMLIDASHVEE--TRVVVLRDNRVEELDFESEHKKQI---KGNIYLAKVTRVEPSLQAAF 58
           +++ +A++ E+   R+ +L +  + EL  E   +       G+IYL  V++V   +Q   
Sbjct: 268 ELVFNAANEEDFGVRIAILEEGELVELWHEHGTEPGKGMRVGDIYLGTVSKVISGMQGVL 327

Query: 59  VDY------------GGNRHGFL---------PFLEIHP--------------------- 76
           VD             G  +   L            +                        
Sbjct: 328 VDLTGKGPPYALMQKGIEKPA-LAWRLKGSASAASDETSRQADNRNEARNGGWWEGNKWK 386

Query: 77  ---DYYQI---PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFS 130
              D  Q    P S  + L   +        A                + +     + + 
Sbjct: 387 SDEDATQTEVAPGSANEPLRSYTRRLAAKGAAGGSAWRGAGGRSIRSSTPKSPGESSRWV 446

Query: 131 QETEEESIISANNDVVSNVEDVKGGSPEDVP---------KKFKRQYCIQEVIK---NRQ 178
           + T + +      DV  N E       +D           +K  R+   +E        Q
Sbjct: 447 RWTPDLTPDECTVDVNGNNESDVQDEGDDDSDGSGGDVVTEKMTRRRLREECYSMWQPGQ 506

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
            ++VQ+ +   G KG  VT   +L GR  VL P+  +G  +SRK+     +    +    
Sbjct: 507 PVVVQVTRLGSGYKGPRVTARPTLPGRNVVLCPD-GEGVYVSRKLMGHARKYV--KDVGL 563

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR----------ELALNSVAPHLV 288
              P G  +I+RT  A   K  ++ D   L   W  +             +  +  P  +
Sbjct: 564 TVCPEGSALIMRTEAAGVNKDTLRLDIGCLADDWSKIVTESEGVVYAANESFTTPHPRRL 623

Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA--RIVRQYEDPHPIF 346
            +  +  +  +RDL+ + +S++ V   + Y+   D +     S A    V  +E P  +F
Sbjct: 624 LQAASREQVLVRDLFGERVSKLTVDTPESYKIIVDDLMRSGASQAIIDRVVLHEAPESVF 683

Query: 347 FRSGIEVQLDSLHQTEVTL----PSRGYVIINQTEALVSIDVNSGRSTREH--CIEDTAL 400
              G++  ++S+  TE        S  +++I  TEAL +IDVN+GR+  E     E  AL
Sbjct: 684 ESLGVDADIESMVGTERVFLGPELSGAHIVIQHTEALTAIDVNAGRTAMEAGEDGEAIAL 743

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
           + N+ AA  +AR LRLRD+ GL++VD IDM      R VEK  + +  +DRA+V    IS
Sbjct: 744 RVNMAAAALVARVLRLRDIGGLVMVDLIDMHADDARREVEKAFQAAAARDRAQVVFVPIS 803

Query: 461 NFGLLEMSRQRIRS 474
             G++E++R+R+++
Sbjct: 804 ALGVMEIARERLQT 817


>gi|255264386|ref|ZP_05343728.1| ribonuclease, Rne/Rng family [Thalassiobium sp. R2A62]
 gi|255106721|gb|EET49395.1| ribonuclease, Rne/Rng family [Thalassiobium sp. R2A62]
          Length = 344

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 40/308 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  +    RY+++ P    G  +SR I +   R  L  +
Sbjct: 76  PGQPILVQVTGYADEGKAVPVTHKVLFKSRYAIVTPGAP-GVNVSRSIRDDDARDTLLAV 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A  +      G+ILR++       EI  D E ++ + D+V   A    A  L   +G   
Sbjct: 135 AHSV-FDGDHGLILRSSCDGADAEEIAEDIEAMLAIADHVIAQAEGPNAEMLNEGDGP-- 191

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                          +                  F   G+  QL
Sbjct: 192 ------------------------------HVTAWREWTDQSDVMTDAGGFESHGVLDQL 221

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
            +    +V L S G + I  T AL+++DVN+G  T         L+ N+  A  + RQLR
Sbjct: 222 PAFFDPKVRLTS-GDMYIEPTRALIAVDVNTGGDTSVA----AGLKVNMSVARALPRQLR 276

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I +D   M  K + +  E  L+ + + DR    +   +  G  E+ R+R R  
Sbjct: 277 LRGLGGQITLDLAPMT-KNDRKQFETTLRAAFRADRIETALVGWTPLGHYELQRKRERLP 335

Query: 476 VLESTTKV 483
           + +  ++ 
Sbjct: 336 LSDLVSED 343


>gi|114767233|ref|ZP_01446098.1| ribonuclease, Rne/Rng family protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114540643|gb|EAU43714.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. HTCC2601]
          Length = 283

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 123/306 (40%), Gaps = 41/306 (13%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               LLVQ+       K   VTT L    RY+++ P    G  +SR+I +   R  L  +
Sbjct: 19  PGDALLVQVTGFAEPGKAIPVTTRLLFKSRYAIVTPGAP-GLNVSRQIKDDDLRDTLLGV 77

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A  +      G+ILR++ A+    +I  D   +++L   V   A       +  +  + +
Sbjct: 78  AHEVMEG-DHGLILRSSCATGDPDDIAEDIAAMVQLAAQVMADASGEPETLVEGDGPHAL 136

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                D    D                                       F R  +   L
Sbjct: 137 AWREWDSDDVD----------------------------------GKPGSFERHNVLDAL 162

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           + L    V LP  G + I  T ALV+ID+N+G  T         L+ N+ A  E+ RQLR
Sbjct: 163 EDLRSPMVALPGGGSMYIEPTRALVAIDINTGNDTSPA----AGLKANMAALRELPRQLR 218

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I+VD      KK+ R +E+ L+ +LK+D     +   +  GL+E+ R+R R  
Sbjct: 219 LRGLGGQILVDPAP-APKKDRRQMEQVLRAALKQDATETILAGWTQLGLMELQRKRERMP 277

Query: 476 VLESTT 481
           + E  +
Sbjct: 278 LREVLS 283


>gi|254512732|ref|ZP_05124798.1| ribonuclease, Rne/Rng family [Rhodobacteraceae bacterium KLH11]
 gi|221532731|gb|EEE35726.1| ribonuclease, Rne/Rng family [Rhodobacteraceae bacterium KLH11]
          Length = 340

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 111/305 (36%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
              +LLVQ+       K   VT  +    RY+++ P+   G  ISR+I +   R  L EI
Sbjct: 74  PGALLLVQVTGYAEPGKAIPVTNRILFKSRYAIVTPDAP-GLNISRRIRDEDTRDQLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A  L   +  G+ILR+        +I  D   ++ L D V           L   +   I
Sbjct: 133 AHDLMGDSAHGLILRSCCQGAEPDDIAEDISAMLALADQVLHDPGTEPEL-LSEGDTPHI 191

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                                     +       F   G+   L
Sbjct: 192 L--------------------------------AWRDWTDPAEVVTSSGGFEAHGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++       LP  G++ I  T ALV++DVN+G  T          + N   A+ + R LR
Sbjct: 220 ETARSKSEPLPGGGHLYIEPTRALVAVDVNTGADTSLA----AGTKANFACAKTLPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           +R L G I +D   M  KK+ R  E  L+ +LK D     +   +  G  E+ R+R R  
Sbjct: 276 VRGLGGQITLDLAPM-PKKDRRGFESALRAALKSDPEETILAGWTPLGHFELQRKRGRIP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LAEIL 339


>gi|149203437|ref|ZP_01880407.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035]
 gi|149143270|gb|EDM31309.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035]
          Length = 341

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 38/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   VTT L    RY+++ P+   G  +SR I +   R +L EI
Sbjct: 74  PGQPLLVQVTGHAEPGKALPVTTRLLFKSRYAIVTPDAP-GLNVSRSIKDETLRDSLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      + MG+ILR++  S    +I  D   +                        +L 
Sbjct: 133 AHAEMGDSPMGLILRSSCESAEAADIAEDVNAMR-----------------------DLA 169

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
           +  + D    +   +           +D+++                   F  +G+  QL
Sbjct: 170 EAVLADATGPEPETLTEGDGPHTLAWRDWVE---------PADVLTDPGSFAENGVLDQL 220

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D+L +  V LP      I  T ALV++DVN+G            L+ N+  A ++ RQLR
Sbjct: 221 DALREALVPLPGGASFYIEPTRALVAVDVNTGGDASLA----AGLKANIAMARDLPRQLR 276

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I +D   M  KK+ R+ E  L+ +L++D     +   +  G  E+ R+R R  
Sbjct: 277 LRGLGGQITLDLAPM-PKKDRRTFEASLRAALRQDTTETTLAGWTPLGHFELQRKRDRQP 335

Query: 476 VLEST 480
           + +  
Sbjct: 336 LTDLL 340


>gi|163737329|ref|ZP_02144747.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           BS107]
 gi|161389933|gb|EDQ14284.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           BS107]
          Length = 340

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 123/305 (40%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   V+  L    RY+++ P    G  ISR I +  +R  L EI
Sbjct: 74  PGQELLVQLTGYAEAGKALPVSQKLLFKSRYAIITPEAP-GLNISRSIRDEEERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      +G G+ILR+A       +I+ D   ++ L   V E A +        +  +L+
Sbjct: 133 AHDAIGDSGYGLILRSACDGADSTDIEEDILAMVSLASQVLEDAGSGPEVLAEGDTPHLL 192

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A RD       E                                    F R G+   L
Sbjct: 193 --AWRDWTDPADIE-------------------------------REAGGFERLGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           +++      L    ++ I QT ALV++DVN+G  T         ++ N+  A+ +AR LR
Sbjct: 220 ETVRGIREPLSGGAFLFIEQTRALVAVDVNTGADTSLA----AGVKANMACAKSLARALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G IVVD   M  KK+ R+ E  L+ S + D     +   +  G  E+ R+R R  
Sbjct: 276 LRGLGGQIVVDPAPM-PKKDRRAFETALRASFRSDSEDTVLVGWTTLGHFELQRKRGRIP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LKEVL 339


>gi|145356965|ref|XP_001422693.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582936|gb|ABP01010.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 312

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 21/314 (6%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
            Q ++VQ+ +   G KG  VT   +L GR  VL P+  +G  +SRK+      +   +  
Sbjct: 1   GQPVVVQVTRLGSGYKGPRVTARPTLPGRNVVLCPD-GEGVYVSRKLMG--RARKYVKDV 57

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---------- 286
                P G  +I+RT  A   +  +K D   L   WD + E +  ++             
Sbjct: 58  GATVCPKGSALIMRTEAAGVNQDTLKLDIGCLAEDWDTIVEESERAIRHAELTLRPPPPR 117

Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL--MPSYARIVRQYEDPHP 344
            + +  +  +  +RDL+ + ++++ V  E+ Y+   D +            V  ++   P
Sbjct: 118 RLLQAASREQVLVRDLFGERVAKLTVDTEESYKTIVDDLLRTGASQEIINRVVLHQGAEP 177

Query: 345 IFFRSGIEVQLDSLHQTEVTLP----SRGYVIINQTEALVSIDVNSGRSTREH--CIEDT 398
           +F    ++  ++++  TE        S  +++I  TEAL +IDVN+GR+        E+ 
Sbjct: 178 VFKALEVDKVIETMMGTERIFLGPELSGAHIVIQHTEALTAIDVNAGRTAMGAGEDGEEV 237

Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
           AL+ N+ AAE +AR LRLRD+ GL+++D IDM      ++VE   +    +DRA+V    
Sbjct: 238 ALRVNIAAAELVARTLRLRDIGGLVMLDLIDMHTDDARKAVETAFEAIASRDRAQVVFVP 297

Query: 459 ISNFGLLEMSRQRI 472
           IS  G++E++R+R+
Sbjct: 298 ISALGVMEVARERL 311


>gi|257466299|ref|ZP_05630610.1| putative ribonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917456|ref|ZP_07913696.1| cytoplasmic axial filament protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691331|gb|EFS28166.1| cytoplasmic axial filament protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 425

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/391 (25%), Positives = 170/391 (43%), Gaps = 19/391 (4%)

Query: 130 SQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEER 189
             E  +  I   +  V +     K      +      +    E   N Q  +VQ+++EER
Sbjct: 20  DNELWDLRIEEKDKIVRNGFYLAKKEKEHFLLLSSGEKVFCSEAFPNGQEKIVQVLQEER 79

Query: 190 GNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVIL 249
             K A V+  L +   Y V  P   KG  +S+K+    +RK L+EI +  E       ++
Sbjct: 80  EEKLAQVSQKLEMTNPYFVFFP-YGKGIFLSKKMEEEQERKRLREIFQKYEEK--GSFLI 136

Query: 250 RTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISE 309
           RT      +  ++++ + +++ W  V+E A +      +      I+  + +   +D   
Sbjct: 137 RTEAKGMLERNLEQEIQQVLKEWQLVQERAFHLKKKGNLRSTVVWIEEILEEYGKQDWKT 196

Query: 310 IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369
                     E K+ +K  +  Y + VR+Y     ++ +  +E Q+  L Q ++ L S G
Sbjct: 197 CYCEN----FELKETLKEKLTFYQKQVREYHGEISLWKQRKLEEQIRVLCQEKIDLASGG 252

Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429
           Y+ I  T A V+IDVNSG  +            N+EAA EI RQ++LR+LAG IV+DFI+
Sbjct: 253 YLWIESTRACVTIDVNSGAGSPRRS--------NIEAAREIPRQVKLRNLAGNIVIDFIN 304

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489
            +  +  + +   LKE   +D   +Q G   +F L   SRQR    +    ++   +   
Sbjct: 305 CKNVEEKKEIVSILKEGFSRDHHFIQWGNFHDFDLFLFSRQRKGKELSFYYSEESLF--- 361

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
              ++        +L   E+ LL     NI+
Sbjct: 362 -YQVQCLEEECNDLLEQKEKILLIEGEKNIL 391


>gi|218670376|ref|ZP_03520047.1| probable ribonuclease protein [Rhizobium etli GR56]
          Length = 281

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 175/266 (65%), Positives = 208/266 (78%), Gaps = 2/266 (0%)

Query: 116 NDHSLEEVAPIANFSQETEEESIISANNDVVSNV--EDVKGGSPEDVPKKFKRQYCIQEV 173
              S+ E    +    + +++       +V+ +V  ED     P+ V +K ++QY IQEV
Sbjct: 14  ETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGAEDAMEEVPDRVQRKPRKQYRIQEV 73

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
           IK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLMPNT++G  ISRKITNP DRK LK
Sbjct: 74  IKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADRKRLK 133

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           EIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+NVR L L S AP LVYEEG+
Sbjct: 134 EIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVYEEGS 193

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LMPS+A++V+ Y D HPIF RSGIE 
Sbjct: 194 LIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEA 253

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEAL 379
           QLD + Q +VTL S GY+I+NQTEAL
Sbjct: 254 QLDRMLQPQVTLRSGGYLIMNQTEAL 279


>gi|126738149|ref|ZP_01753870.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6]
 gi|126720646|gb|EBA17351.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6]
          Length = 340

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 118/306 (38%), Gaps = 39/306 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q+LLVQ+       K   VT  L    RY++  P    G  ISR I +  +R  L EI
Sbjct: 74  PGQMLLVQVTGYAEPGKAIPVTQKLLFKSRYAIATPGAP-GLNISRSIRDEDERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      A   +ILR+A +     +I  D   +  L   +    +      ++ E     
Sbjct: 133 AHECLGDAEQSMILRSACSGAPSEDIAEDIAAMANLAAEIMSDEIGEPE--VLTEGDGPH 190

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            RA RD       E                                    F R+G+   L
Sbjct: 191 LRAWRDWVEPAAIE-------------------------------QEPGGFERNGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D    +   L    ++ +  T ALV++DVN+G+ T         L+ NL  A  + R LR
Sbjct: 220 DIALSSREPLSGGAFIFVEPTRALVAVDVNTGKDTSLA----AGLKANLACARALPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
            R LAG IV+D   M  KK  RS E  L+ +LK +     +   +N G  E+ R+R R  
Sbjct: 276 NRGLAGQIVIDLAPM-PKKERRSFESALRGALKAEGDDTVMLGWTNLGHFELQRKRSRIP 334

Query: 476 VLESTT 481
           + E  +
Sbjct: 335 LTEVLS 340


>gi|83943982|ref|ZP_00956439.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36]
 gi|83845229|gb|EAP83109.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36]
          Length = 340

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 118/305 (38%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  L    RY+++ P    G  ISR I +  +R  L EI
Sbjct: 74  PGQPILVQVSGYAEPGKAVPVTQKLLFKSRYAIVTPGAP-GTNISRSIRDEEERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      A  G+ILR++ A     +I  D + ++ L D                      
Sbjct: 133 AHEASDGAAHGLILRSSCAGADADDIADDIDAMLALADK--------------------- 171

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
              + D    D+  +           +D+++                   F   G+   +
Sbjct: 172 ---VLDDPSTDMEVLSEGDGPHILAWRDWVE---------PADVVTDPGGFETHGVLDTV 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           DSL Q  V L    ++ +  T ALV++DVN+G            ++ N+  A  + R LR
Sbjct: 220 DSLSQPRVALDGGAFMFVEPTRALVAVDVNTGADVSLA----AGIKANMACARALPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I +D   M  KK+ R  E  L+++ + D     +   +  G  E+ R+R R  
Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRPFETALRQAFRADDVETTLVGWTPLGHYELQRKRARMP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LAEVL 339


>gi|254487506|ref|ZP_05100711.1| ribonuclease G, putative [Roseobacter sp. GAI101]
 gi|214044375|gb|EEB85013.1| ribonuclease G, putative [Roseobacter sp. GAI101]
          Length = 340

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 114/305 (37%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  +    RY+++ P    G  ISR I +  +R  L EI
Sbjct: 74  PGQPILVQVSGYAEPGKAVPVTQKILFKSRYAIVTPGAP-GTNISRSIRDEEERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      A  G+ILR++ A     +I  D + ++ L D V      +    ++ E     
Sbjct: 133 AHEAAQGASHGLILRSSCAGADGDDIADDIDAMLTLADKVLG--DTATEMEVLSEGDGPH 190

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A RD                                    +       F    +   +
Sbjct: 191 ILAWRDWVD-------------------------------PAEVVTEPGSFETHAVLDAI 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D L Q  V L     + +  T ALV++DVN+G            ++ N+  A  + R LR
Sbjct: 220 DGLRQPRVELDGGASMFVEPTRALVAVDVNTGADVSLA----AGIKANMSCARALPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I +D   M  KK+ R  E  L+++ + D     +   +  G  EM R+R R  
Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRPFETALRQAFRADDVETTLIGWTPLGHYEMQRKRARMP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 MSEVL 339


>gi|86137057|ref|ZP_01055635.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193]
 gi|85826381|gb|EAQ46578.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193]
          Length = 340

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 116/305 (38%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q+LLVQ+       K   VT  L    RY++  P    G  ISR I +  +R  L EI
Sbjct: 74  PGQMLLVQVTGYAEPGKAIPVTQKLLFKSRYAIATPGAP-GVNISRSIRDDDERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A G    A  G+ILR+A A     E+  D E +                        +L 
Sbjct: 133 AHGALEGASYGMILRSACAGADGDEVAEDIEAMA-----------------------DLA 169

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            + + D             +       D   L          +       F   G+   L
Sbjct: 170 AQVLADAEG----------DMDVLTEGDGPHLRAWREWSDPAEVFRDAGDFEHHGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           DS       L    ++ I  T ALV++DVN+G  T          + N+  A+ + R LR
Sbjct: 220 DSALTIREPLTGGAHLFIEATRALVAVDVNTGSDTSFA----AGTKANIACAKLLPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR LAG IV+D   M  KK+  + E  L+ +L+ D     +   +N G  E+ R+R R  
Sbjct: 276 LRGLAGQIVIDVAPM-PKKDRSTFESTLRAALRADSEETTMLGWTNLGNFELQRKRSRVV 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LAELL 339


>gi|110678990|ref|YP_681997.1| ribonuclease G, putative [Roseobacter denitrificans OCh 114]
 gi|109455106|gb|ABG31311.1| ribonuclease G, putative [Roseobacter denitrificans OCh 114]
          Length = 340

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 112/305 (36%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   V   L    RY ++ P+   G  ISR I +  +R  L EI
Sbjct: 74  PGQAVLVQVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAP-GLNISRSIRDEAERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      +G G+ILR++  +  + +I +D + +M L  +V                    
Sbjct: 133 AHEGAGGSGYGLILRSSCENADEEDIAQDIDTMMALASDVLND----------------- 175

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                             G+       D   LL         +       F   G+   L
Sbjct: 176 ----------------AGGDMAVLATGDGPHLLAWRDWVNPGEVVTQAGSFETHGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D        L       I  T AL+++DVN+GR T         L  NL  A  + R LR
Sbjct: 220 DRDLGVLQPLDGGASFYIEPTRALIAVDVNTGRDTSLA----AGLNANLACARMLPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           ++ L G IV+D   M  KK+ R  E  L+++ K       +   +  G  E+ R+R R  
Sbjct: 276 VKGLGGQIVLDLAPM-PKKDRRRFETALRQAFKSCSVETALVGWTPLGHYELQRKRARVP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LHEVL 339


>gi|256091572|ref|XP_002581640.1| Ribonuclease G [Schistosoma mansoni]
 gi|238667742|emb|CAZ37881.1| Ribonuclease G, putative [Schistosoma mansoni]
          Length = 271

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          LI+ +   E+RV ++ +  V+EL  E   ++ + GNIY  +V RV P +QAAFV+ G +R
Sbjct: 2  LINVT-PMESRVALVENGIVQELYVERTARRGLVGNIYRGRVVRVLPGMQAAFVEIGLSR 60

Query: 66 HGFLPFLEI 74
            F+   E+
Sbjct: 61 TAFIHLNEV 69


>gi|257452429|ref|ZP_05617728.1| putative ribonuclease [Fusobacterium sp. 3_1_5R]
 gi|317058972|ref|ZP_07923457.1| ribonuclease G [Fusobacterium sp. 3_1_5R]
 gi|313684648|gb|EFS21483.1| ribonuclease G [Fusobacterium sp. 3_1_5R]
          Length = 425

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 97/391 (24%), Positives = 171/391 (43%), Gaps = 19/391 (4%)

Query: 130 SQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEER 189
             E  +  I   +  V +     K      +      +    E   N Q  +VQ+++EER
Sbjct: 20  DNELWDLRIEEKDKIVRNGFYLAKKEKEHFLLLSSGEKVFCSEAFPNGQEKIVQVLQEER 79

Query: 190 GNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVIL 249
             K A V+  L +   Y V  P   KG  +S+K+    +RK L+EI +  E       ++
Sbjct: 80  EEKLAQVSQKLEMTNPYFVFFP-YGKGIFLSKKMEEEQERKRLREIFQKYEEK--GSFLI 136

Query: 250 RTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISE 309
           RT      +  ++++ + +++ W  V+E A +      +      ++  + +   +D   
Sbjct: 137 RTEAKGMLERNLEQEIQQVLKEWQLVQERAFHLKKKGNLRSTVVWMEEILEEYGKQDWKT 196

Query: 310 IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369
                     E K+ +K  +  Y + VR+Y     ++ +  +E Q+  L Q ++ L S G
Sbjct: 197 CYCEN----FELKETLKEKLTFYQKQVREYHGEISLWKQRKLEEQIRVLCQEKIDLASGG 252

Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429
           Y+ I  T A V+IDVNSG  +            N+EAA EI RQ++LR+LAG IV+DFI+
Sbjct: 253 YLWIESTRACVTIDVNSGAGSPRRS--------NIEAAREIPRQVKLRNLAGNIVIDFIN 304

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489
            +  +  + +   LKE   +D+  +Q G   +F L   SRQR    +    ++   +   
Sbjct: 305 CKNVEEKKEIVSILKEGFLRDQHFIQWGNFHDFDLFLFSRQRKGKELSFYYSEESLF--- 361

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
              ++        +L   E+ LL     NI+
Sbjct: 362 -YQVQCLEEECNDLLEQKEKILLIEGEKNIL 391


>gi|56708868|ref|YP_164910.1| ribonuclease [Ruegeria pomeroyi DSS-3]
 gi|56680553|gb|AAV97218.1| ribonuclease, Rne/Rng family [Ruegeria pomeroyi DSS-3]
          Length = 340

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 114/306 (37%), Gaps = 39/306 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
               LLVQ+       K   VT  L    RY+++ P    G  +SR I +  +R  L EI
Sbjct: 74  PGAHLLVQVTGYAEPGKAIPVTAKLLFKSRYAIVTPGAP-GLNLSRNIRDEAERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A       G G+ILR++ A      I  D   ++                          
Sbjct: 133 AHEEMEGHGFGLILRSSCAEVEGEVIAEDIAAMIAQAQQ--------------------- 171

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
              + +   KD   +I          +D+             +       F   G+   L
Sbjct: 172 ---VLEDDGKDCETLIEGDGPHVLAWRDWT---------DPAEVVTAAGGFEDHGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           + +      LP  G++ I  T ALV++DVN+G  T          + N   A+ + R LR
Sbjct: 220 ERVRGIAEPLPGGGHLYIQPTRALVAVDVNTGSDTSLA----AGQKANFACAKLLPRVLR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           +R L G I +D   M  KK+ R  E  L+ +LK D     +   +  G  E+ R+R R  
Sbjct: 276 IRGLGGQITLDLAPM-AKKDRRGFEAALRAALKADSEETTLAGWTPLGHYELQRKRGRVP 334

Query: 476 VLESTT 481
           V E+ +
Sbjct: 335 VAEALS 340


>gi|83954556|ref|ZP_00963267.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1]
 gi|83840840|gb|EAP80011.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1]
          Length = 340

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 118/305 (38%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  L    RY+++ P    G  ISR I +  +R  L EI
Sbjct: 74  PGQPILVQVSGYAEPGKAVPVTQKLLFKSRYAIVTPGAP-GTNISRSIRDEEERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      A  G+ILR++ A     +I  D + ++ L D                      
Sbjct: 133 AHEASDGAAHGLILRSSCAGADADDITDDIDAMLALADK--------------------- 171

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
              + D    D+  +           +D+++                   F   G+   +
Sbjct: 172 ---VLDDPSTDMEVLSEGDGPHILAWRDWVE---------PADVVTDPGGFETHGVLDTV 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           DSL Q  V L    ++ +  T ALV++DVN+G            ++ N+  A  + R LR
Sbjct: 220 DSLSQPRVALDGGAFLFVEPTRALVAVDVNTGADVSLA----AGIKANMACARALPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I +D   M  KK+ R  E  L+++ + D     +   +  G  E+ R+R R  
Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRPFETALRQAFRADDVETTLVGWTPLGHYELQRKRARMP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LAEVL 339


>gi|163741999|ref|ZP_02149388.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           2.10]
 gi|161384720|gb|EDQ09100.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis
           2.10]
          Length = 340

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 121/305 (39%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   V+  L    RY+++ P    G  ISR I +  +R  L EI
Sbjct: 74  PGQELLVQLTGYAEAGKALPVSQKLLFKSRYAIITPEAP-GLNISRSIRDEDERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A         G+ILR+A       +I+ D   ++ L   V E A +        +  +L+
Sbjct: 133 AHDAMGGIAYGLILRSACDGADSADIEEDILAMVSLASQVLEDAGSGPEVLAEGDTPHLL 192

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A RD       E                                    F R G+   L
Sbjct: 193 --AWRDWTDPADIE-------------------------------RDAGGFERLGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           +++      L    ++ I +T ALV++DVN+G  T         ++ N+  A+ +AR LR
Sbjct: 220 ETVQGIREPLSGGVFLFIEETRALVAVDVNTGADTSLA----AGVKANMACAKSLARALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G IV+D   M  KK+ R+ E  L+ S + D     +   +  G  E+ R+R R  
Sbjct: 276 LRGLGGQIVIDPAPM-PKKDRRAFETALRASFRSDSEDTVLVGWTTLGHFELQRKRGRIP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LKEVL 339


>gi|85704672|ref|ZP_01035774.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217]
 gi|85671080|gb|EAQ25939.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217]
          Length = 341

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 120/305 (39%), Gaps = 38/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   VT+ +    RY+++ P+   G  ISR I +   R +L EI
Sbjct: 74  PGQPLLVQVTGYAELGKALPVTSTILFKSRYAIVTPDAP-GLNISRSIKDEDLRDSLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      + MG+ILR++  +    +I  D   +  L + V   A  S    L   +G   
Sbjct: 133 AHAEMGQSAMGLILRSSCDTAEASDIAEDIRAMCELAEAVLADATGSEPETLTEGDGPHT 192

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                                             F  SG+  Q+
Sbjct: 193 L--------------------------------AWRDWVAPSDVMTTPGSFATSGVLDQI 220

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
            +L  ++V LP  G   I  T ALV++DVN+G            L+ N+  A ++ RQLR
Sbjct: 221 GALSDSQVPLPGGGSYYIEPTRALVAVDVNTGGDASLA----AGLKANIAVARDLPRQLR 276

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G I +D   M  KK+ R+ E  L+ + ++D     +   +  G  E+ R+R R  
Sbjct: 277 LRGLGGQITLDLAPM-PKKDRRTFESVLRATFRQDATETALVGWTPLGHFELQRKRDRLP 335

Query: 476 VLEST 480
           + +  
Sbjct: 336 LTDLF 340


>gi|254450815|ref|ZP_05064252.1| ribonuclease G, putative [Octadecabacter antarcticus 238]
 gi|198265221|gb|EDY89491.1| ribonuclease G, putative [Octadecabacter antarcticus 238]
          Length = 342

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 117/301 (38%), Gaps = 39/301 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  +    RY+++ P    G  +SR+I     R+ L   
Sbjct: 76  PGQAILVQVTGYADDGKAIPVTDRVLFKSRYAIVTPGKP-GINVSRQIKEDDVRERLLAC 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A    V  G G+ILR++  + ++ +I  D   +  L   +                    
Sbjct: 135 AHDAGVSDGFGLILRSSCEAASEEDIGEDIAAMDALAAAIMADT---------------- 178

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                D   + ++E        +RE  +  +                   F   G+  Q+
Sbjct: 179 -----DGVAEMLTEGDGPHGLAWREWVEAAQ------------VVTDDGGFEDHGVLDQI 221

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
            ++    V L +  ++ +  T AL+++DVN+G  T         L+ NL A + + R LR
Sbjct: 222 AAIASPRVALEASAFMYVEPTHALIAVDVNTGGDTSPASS----LKANLAACKVLPRALR 277

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G IV+D   M  K   + VE  ++ + + D     +   +  G  E+ R+R R  
Sbjct: 278 LRGLGGQIVIDMAPM-PKTMRKQVEAAMRSAFRADSIDTALVGWTPLGHFELQRKRERLP 336

Query: 476 V 476
           +
Sbjct: 337 I 337


>gi|114769474|ref|ZP_01447100.1| hypothetical protein OM2255_07070 [alpha proteobacterium HTCC2255]
 gi|114550391|gb|EAU53272.1| hypothetical protein OM2255_07070 [alpha proteobacterium HTCC2255]
          Length = 349

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/310 (24%), Positives = 116/310 (37%), Gaps = 39/310 (12%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
                + VQ+       K   V   L    RY ++ P+   G  I+R I +  +R  L E
Sbjct: 77  PQGTQMTVQVATHAETGKATPVVNKLIFKSRYCIVTPDAP-GLNIARSIKDDEERDRLLE 135

Query: 235 IARGL--EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
           I   +        G+I+R++        I  D   +  L DNV      S  P L+    
Sbjct: 136 IVHEVSTNRSNEYGLIIRSSAMDIDADAISGDINAMYDLADNVMSQ--TSGDPALIMPAP 193

Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352
               +A RD    D  E+I                                  F   GI 
Sbjct: 194 TAEMKAWRDWVNPDPDEVIK-----------------------------EINSFETMGIW 224

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
             ++ L  ++  LP+   +II  T A V++DVN+G            L+ NL  A+E+  
Sbjct: 225 DHIEKLKHSKSKLPNGASMIIEPTSAFVAVDVNTGNDFS----LSAGLKANLAVAKELPN 280

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           QL LR L G I++DF     KK+ + +E  L  S +K +    V   +  G  E+ R+R 
Sbjct: 281 QLSLRGLGGQIIIDFAP-SPKKDRKLIETALNSSFRKGKIDTVVVGWTTLGNFELQRKRE 339

Query: 473 RSSVLESTTK 482
           R  + E    
Sbjct: 340 RIPLSELLQD 349


>gi|289424022|ref|ZP_06425811.1| ribonuclease G [Peptostreptococcus anaerobius 653-L]
 gi|289155597|gb|EFD04273.1| ribonuclease G [Peptostreptococcus anaerobius 653-L]
          Length = 460

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 155/393 (39%), Gaps = 25/393 (6%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K    +LVQ+ K ++ NK  ++   +SL GR  V +    K         +    +    
Sbjct: 76  KVGDRVLVQVKKSDKENKRLSLDLEISLTGRGLVYIGGLKKPVFSKSIKDSSQRSRIR-- 133

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                 +      ++RT        ++ ++   L R + +V +    +    L+    ++
Sbjct: 134 -----SILPSPEYLVRTRAQYMLDQDLIKEAGILERDYQDVLDSFKKNRRIGLLRPAQSI 188

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV-----------RQYEDPH 343
           +   I D    D  E           +   ++       R                +   
Sbjct: 189 VLEYIGDNIGVDQDEGSSDEIDRIVYSVYGIEEDFNKDLRAYLKTVSSDLLLKLDKKKNT 248

Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403
            IF   GI  ++  L    V      Y+II++TEAL  IDVN+G        E T    N
Sbjct: 249 DIFEAYGINTRIGRLLSKRVDTKQGPYIIIDRTEALNIIDVNTGGFVGYSDYETTVTMAN 308

Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463
             AA+EI RQ+ +RDL+G+I+VDFIDM++K    S+   + + L +D  + +V   +  G
Sbjct: 309 KIAAKEIVRQILMRDLSGIILVDFIDMKDKSARDSLIDIINQGLSEDERKFKVHGYTRLG 368

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           LLE+SR R   S+L+    +         I+S  SV   I R V+  +     ++I +  
Sbjct: 369 LLEISRSRKSKSILDYYEDIDPKNLSR--IKSLDSVIDEIERRVQIEVYHKQNYDIKLCD 426

Query: 524 HSDVVLYLLNQK-----RATIVEYEARFGVSIN 551
                  +  ++     +  I + E R+  +I 
Sbjct: 427 ILYEYRLVEIEEIFKSCQGMIKKMEVRYNANIE 459



 Score = 67.3 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69
           V+ D  + +L  E         +IY  +V RV P ++A FVD G +  G+L
Sbjct: 16 AVMDDGDLVDLVIEKNDASVRIKDIYAGRVERVLPGMEACFVDIGSDISGYL 67


>gi|83594099|ref|YP_427851.1| ribonuclease G (RNase G) [Rhodospirillum rubrum ATCC 11170]
 gi|83577013|gb|ABC23564.1| ribonuclease G (RNase G) [Rhodospirillum rubrum ATCC 11170]
          Length = 460

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 144/377 (38%), Gaps = 17/377 (4%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
              +L  Q+++E    KG  VT   +LAGR  V  P         R  +     K L+  
Sbjct: 85  EGALLAFQVLREAVAGKGPTVTAAPTLAGRLLVYTPYVPGVGLSPRAGSTAAR-KALRAR 143

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
              L  P G GV+ RT     ++  ++ + ++    W  +      S  P L+      +
Sbjct: 144 ITALLDP-GEGVVARTIAGEASEAALRAELDHHRARWRAIGRALAASTRPGLLEAAPGPL 202

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
              + D     +  ++    +  +  +  +    P +   V       P+F R G+E  L
Sbjct: 203 GGWL-DSLGDALRSVVADQGERAQALRRALAARGPDWPARVVIERADQPLFERWGVEEAL 261

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++     + LP  G + I +T AL +IDV++G + R              AA EIARQ+R
Sbjct: 262 EAALAVRLALPGGGAIAIEETAALTAIDVDAGGADRR--------LVAPVAAREIARQIR 313

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR LAG I++DF               L E+L  D A  +V  ++  GL+E+ R R R  
Sbjct: 314 LRALAGQILIDFPRGARGPEESG-LVALIEALAADPAGPRVLGVTRGGLVEVVRPRRRPP 372

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
           +    T       G     +  +  L+ LR +     +       +         L    
Sbjct: 373 LSSLLTVP-----GGPPKLTAETALLAALRELVAGATRAPGARPHLRVGPRSGGLLATDL 427

Query: 536 RATIVEYEARFGVSINV 552
              + E EA  G ++ +
Sbjct: 428 AQALAEVEAALGQAVAI 444



 Score = 52.3 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69
            ETR  +L  +   E+ F+  H  +  G I   +VT   P  QA FVD G    GFL
Sbjct: 17 PGETRWALLAGDTPVEVVFQRAHAVET-GAIVAGRVTAAVPGHQALFVDLGRGPAGFL 73


>gi|153814866|ref|ZP_01967534.1| hypothetical protein RUMTOR_01081 [Ruminococcus torques ATCC 27756]
 gi|145847897|gb|EDK24815.1| hypothetical protein RUMTOR_01081 [Ruminococcus torques ATCC 27756]
          Length = 252

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 126/240 (52%), Gaps = 1/240 (0%)

Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299
                 G+I+RT        E++ + E L   +  +   AL+ VA   +          +
Sbjct: 1   MKNEQFGIIIRTNAKGVPFQEVEDEIERLKEEYKKLLNTALSRVAFSRLKSAPPTYISDL 60

Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSL 358
           +++Y + + EI++ G+  Y E +++     P   +++R       P+      E  L+  
Sbjct: 61  KNVYMEGMEEIVIEGKDLYTEIQEYFLTEFPEKVKLLRLYENPDFPLCKLYSTETALEKA 120

Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418
            +  V L + GY+II  TEAL  IDVNSG+   +      A++ N+EAA+E A+Q+RLR+
Sbjct: 121 LKEFVWLKNGGYLIIQPTEALTVIDVNSGKMAVKSKNSAGAMKVNMEAAQEAAKQIRLRN 180

Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           L+G+I+VDF+++E K++   + K+ +  L KD     +  ++  GL+E++R+++R  + E
Sbjct: 181 LSGIIIVDFVNLESKEDTGILLKEFRNFLSKDPIPTTLVDMTMLGLVEITRKKVRKPLYE 240


>gi|126463036|ref|YP_001044150.1| ribonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126104700|gb|ABN77378.1| ribonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 347

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 39/308 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   VT  L    R  +L P    G  ISR+I +   R+ L EI
Sbjct: 77  PGQRLLVQVSGVAEPGKAVPVTARLLFKSRLCILTPGAP-GLNISRRIRDEALREELSEI 135

Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           A          +G+ILR+A  + +  EI  +      L + V      +  P L+ +   
Sbjct: 136 ASEAMTGAADDLGLILRSACETASDSEIAAEIVETRALAEAVLADV--AGEPELLVDAPG 193

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
             + A RD       EI                             ++    F R G+  
Sbjct: 194 AHQLAWRDWSDPSPDEI-----------------------------DEAEGAFERHGVAE 224

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
             ++L   +V L    ++ +  T ALV++DVN+G  T        AL+ N+ AA E+ RQ
Sbjct: 225 ACEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 280

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G +V+DF  M  K++  ++E+ L+ + + + A   +   +  GL E+ R+R R
Sbjct: 281 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 339

Query: 474 SSVLESTT 481
             + E  T
Sbjct: 340 IPLTELLT 347


>gi|332559070|ref|ZP_08413392.1| ribonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276782|gb|EGJ22097.1| ribonuclease [Rhodobacter sphaeroides WS8N]
          Length = 347

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 39/308 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   VT  L    R  +L P    G  ISR+I +   R+ L EI
Sbjct: 77  PGQRLLVQVSGVAEPGKAVPVTARLLFKSRLCILTPGAP-GLNISRRIRDEALREELSEI 135

Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           A          +G+ILR+A  + +  EI  +      L + V      +  P L+ +   
Sbjct: 136 ASEAMTGAADDLGLILRSACETASDSEIAAEIVETRALAEAVLADV--AGEPELLVDAPG 193

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
             + A RD       EI                             ++    F R G+  
Sbjct: 194 AHQLAWRDWSDPSPDEI-----------------------------DEAEGAFERHGVAE 224

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
             ++L   +V L    ++ +  T ALV++DVN+G  T        AL+ N+ AA E+ RQ
Sbjct: 225 ACEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 280

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G +V+DF  M  K++  ++E+ L+ + + + A   +   +  GL E+ R+R R
Sbjct: 281 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 339

Query: 474 SSVLESTT 481
             + E  T
Sbjct: 340 IPLTELLT 347


>gi|254437685|ref|ZP_05051179.1| hypothetical protein OA307_2555 [Octadecabacter antarcticus 307]
 gi|198253131|gb|EDY77445.1| hypothetical protein OA307_2555 [Octadecabacter antarcticus 307]
          Length = 342

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 112/301 (37%), Gaps = 39/301 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  +    RY+++ P    G  +SR I +   R  +   
Sbjct: 76  PGQAILVQVTGYADDGKAIPVTDRVLFKSRYAIVTPGKL-GINVSRSIKDDDVRNRVLAC 134

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A    V  G G+ILR++       +I  D   +                   +  + + +
Sbjct: 135 AHDEGVSEGFGLILRSSCEGGADADIIEDIAAMDA-------------MASAIMADSDGV 181

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
             A+ D                          L                 F   G+  Q+
Sbjct: 182 AEALTDGDGPHG--------------------LAWREWVEPATVVTDAGGFEHHGVLDQM 221

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
            +L    V L +  ++ +  T AL+++DVN+G  T         L+ N+ A++ + R+LR
Sbjct: 222 TALSSARVGLEASAFMYVEPTRALIAVDVNTGGDTSPASS----LKANIAASKALPRELR 277

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G +V+D   M  K + + +E  L+ + + D     +   +  G  E+ R+R R  
Sbjct: 278 LRGLGGQVVIDMAPM-SKAHRKQIESSLRSAFRADSIDTALVGWTPLGHYELQRKRERLP 336

Query: 476 V 476
           +
Sbjct: 337 I 337


>gi|225378055|ref|ZP_03755276.1| hypothetical protein ROSEINA2194_03715 [Roseburia inulinivorans DSM
           16841]
 gi|225210056|gb|EEG92410.1| hypothetical protein ROSEINA2194_03715 [Roseburia inulinivorans DSM
           16841]
          Length = 330

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 149/328 (45%), Gaps = 27/328 (8%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
              LLVQ+ +E    K  AVT  LS AG+Y+VL     +    S+   N   + + KE+ 
Sbjct: 3   GDELLVQVEREALKTKEPAVTANLSFAGKYAVLTSGNRRLGISSKL--NKEQKAHYKELL 60

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
              +     G+I+RT  AS     +  +   L + W  +RE   +     ++ +      
Sbjct: 61  HEFDTE-SYGLIIRTNAASVADETLIAEIRSLEQEWSQMRENVCHKTCYSVLKKARPTYL 119

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI--------------------- 335
             +++     +SEII      +        +    +                        
Sbjct: 120 EDVKNQREGSVSEIITDDRGLFETICMDYGIHPKQFMTNGSVPVPVDQFQVPTISGTADS 179

Query: 336 ---VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
                 ++    +     ++  L+   + ++ L S   +++  TEAL  IDVNSG++  +
Sbjct: 180 LTLTYYHDPMLTLSSLYSVKSSLEKALREQIWLKSGASIVLQHTEALTVIDVNSGKNIIK 239

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
             + +  L+ NLEAA+EIA QLRLR+++G+I++DFI++  K++   + K+ +  LK D  
Sbjct: 240 KEMRENLLRINLEAAKEIAYQLRLRNISGIIIIDFINLLAKEDEAVLLKEFRTYLKDDPV 299

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLEST 480
           +  +  ++  GL+E++R++I+ S+ +S 
Sbjct: 300 KTDLIDMTRLGLVEVTRKKIKKSLRDSL 327


>gi|260431290|ref|ZP_05785261.1| ribonuclease, Rne/Rng family [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415118|gb|EEX08377.1| ribonuclease, Rne/Rng family [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 340

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 110/305 (36%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             ++LLVQ+       K   VT  +    RY+++ P+   G  ISR I +  +R  L  I
Sbjct: 74  PGEMLLVQVTGYAEPGKALPVTNRVLFKSRYAIVTPDAP-GLNISRSIRDDDERDRLLVI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      +  G+ILR++       EI  D   +  L + V     ++    L   +G  +
Sbjct: 133 AHEQMDGSPFGLILRSSCRGADADEIAEDIAAMRALAEQVVNDTGDATE-TLSEGDGPHV 191

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                                     +       F   G+   L
Sbjct: 192 L--------------------------------AWREWVEPAEVSTQAGGFATHGVLEAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D+       L    Y+ I  T ALV++DVN+G             + N   A+E+ R LR
Sbjct: 220 DAAQAAAHPLAGGAYMYIEPTRALVAVDVNTG----ADGSLAAGTKANFACAKELPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           +R L G I +D   M  KK+ R  E  L+ + K D     +   +  G  E+ R+R R  
Sbjct: 276 VRGLGGQITLDLAPM-PKKDRRGFESALRAAFKADSEETVLAGWTPLGHYELQRKRGRIP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LSEVL 339


>gi|77464194|ref|YP_353698.1| hypothetical protein RSP_0624 [Rhodobacter sphaeroides 2.4.1]
 gi|77388612|gb|ABA79797.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 347

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 128/308 (41%), Gaps = 39/308 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   VT  L    R  +L P    G  ISR+I +   R+ L  I
Sbjct: 77  PGQRLLVQVSGVAEPGKAVPVTARLLFKSRLCILTPGAP-GLNISRRIRDEALREELSAI 135

Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           A          +G+ILR+A  +    EI  +      L + V      +  P L+ +   
Sbjct: 136 AAEAMTGAADDLGLILRSACETAPDSEIAAEIVETRALAEAVLADV--AGEPELLVDAPG 193

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
             + A RD       EI                             ++    F R G+  
Sbjct: 194 AHQLAWRDWSDPSPDEI-----------------------------DETEGAFERHGVAE 224

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
             ++L   +V L    ++ +  T ALV++DVN+G  T        AL+ N+ AA E+ RQ
Sbjct: 225 ACEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 280

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G +V+DF  M  K++  ++E+ L+ + + + A   +   +  GL E+ R+R R
Sbjct: 281 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 339

Query: 474 SSVLESTT 481
             + E  T
Sbjct: 340 IPLTELLT 347


>gi|226325085|ref|ZP_03800603.1| hypothetical protein COPCOM_02877 [Coprococcus comes ATCC 27758]
 gi|225206433|gb|EEG88787.1| hypothetical protein COPCOM_02877 [Coprococcus comes ATCC 27758]
          Length = 396

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 163/401 (40%), Gaps = 13/401 (3%)

Query: 86  RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
           R+ LL E    +  +    + VT        +     +  I          +I  A  ++
Sbjct: 3   RKVLLTECMNRRVLALLEDEKVTEFHFGSSGEKKSCRLGEIYVGRVRKILPNIGGAFVEI 62

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
            +  +       +  P    +      VI     LLVQ+ KE    K   VT  L+  G+
Sbjct: 63  ANGEQCYFALDEKYTPVFTNKIGKKPLVI--GDELLVQVEKEAVKTKQPVVTGNLNFTGQ 120

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y VL           +      +     +      +    G+I RT      + +I+ + 
Sbjct: 121 YVVLTSGNRTIGVSGKIHGARKEE---LQKLGQDYIDCDFGLIFRTNCVEAEETQIRAEI 177

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           + L   +  + E          +    +   +A+RD+Y KD++EIIV            +
Sbjct: 178 DKLTENYHRIVEYGKMRTCFSCLQSAPDPCVQALRDIYKKDLTEIIVEETVEDGALYKEV 237

Query: 326 K-----LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
           +      +      +    +  +P+     +E  +    Q  V + S  Y++I  TEAL 
Sbjct: 238 QTYLETEMPDELPLLRAYTDASYPLVKCYNLEGAIREARQERVWMKSGAYLVIQPTEALT 297

Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
            IDVNSG+  +++       + N EAA E  RQ+RLR+++G+I++DFI+M+  +  + + 
Sbjct: 298 VIDVNSGKCLKKNSHF---PEINREAAREAVRQIRLRNISGIIIIDFINMKSAEEKKELL 354

Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
             L+  LKKD     V  ++   L+E++R++IR ++ ES  
Sbjct: 355 AYLQLELKKDPNPGNVIGMTKLQLVEITRKKIRKTLEESLH 395



 Score = 61.1 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 1  MANKMLIDASHVEETRV-VVLRDNRVEELDF--ESEHKKQIKGNIYLAKVTRVEPSLQAA 57
          M  K+L+  +     RV  +L D +V E  F    E K    G IY+ +V ++ P++  A
Sbjct: 1  MERKVLL--TECMNRRVLALLEDEKVTEFHFGSSGEKKSCRLGEIYVGRVRKILPNIGGA 58

Query: 58 FVDY 61
          FV+ 
Sbjct: 59 FVEI 62


>gi|163734093|ref|ZP_02141534.1| ribonuclease G, putative [Roseobacter litoralis Och 149]
 gi|161392629|gb|EDQ16957.1| ribonuclease G, putative [Roseobacter litoralis Och 149]
          Length = 340

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 108/305 (35%), Gaps = 39/305 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   V   L    RY ++ P+   G  ISR I +  +R  L EI
Sbjct: 74  PGQAVLVQVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAP-GLNISRSIKDEAERDRLLEI 132

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      +G G+ILR++  +  + +I +D + +                         L 
Sbjct: 133 AHEGAGGSGYGLILRSSCENAAEEDIAQDIDTM-----------------------MGLA 169

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
              + D             +       D   LL                 F   G+   L
Sbjct: 170 TDVLED----------SGTDMAVLATGDGPHLLAWRDWVAPGDVVTEAGSFETHGVLDAL 219

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D        L       I  T AL++IDVN+G  T         L  NL  A  + R LR
Sbjct: 220 DRDRGILQPLDGGASFYIEPTRALIAIDVNTGPDTSLA----AGLNANLGCARMLPRALR 275

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           ++ L G IV+D   M  KK+ R  E  ++++ K       +   +  G  E+ R+R R  
Sbjct: 276 VKGLGGQIVLDLAPM-PKKDRRRFETAIRQAFKTCTVETALVGWTPLGHYELQRKRARVP 334

Query: 476 VLEST 480
           + E  
Sbjct: 335 LHEVL 339


>gi|89070658|ref|ZP_01157931.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus
           HTCC2516]
 gi|89043738|gb|EAR49941.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus
           HTCC2516]
          Length = 338

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 119/301 (39%), Gaps = 41/301 (13%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   +T  +    RY++  P    G  ISR + +   R  L+E+
Sbjct: 72  PGQRLLVQVTGYAEPGKAVPLTQRVLFKSRYAIATPEAP-GLNISRALKDEEARVRLREV 130

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A  L    GMG+ILR++  +  + EI  D   ++ L                        
Sbjct: 131 ATPLVPE-GMGLILRSSCENADEDEIAEDIAAMIDLA----------------------- 166

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
            RA+     ++   ++          +++++                   F R  +   L
Sbjct: 167 -RAVTSDSGREPEVLVEGDGPHTLAWREWVE---------PAAIVTEPGGFARENVLDLL 216

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++     V L   G++ +  T ALV++DVN+G  T         L+ NL A   + R LR
Sbjct: 217 EAAASPRVPLD-GGHMWVEPTRALVAVDVNTGGDTSPA----AGLKANLAAIAALPRALR 271

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G + +D   +  K + R  E  L+ + ++D     +   +  G  E+ R+R R+ 
Sbjct: 272 LRGLGGQVTLDLAPLT-KAHRRQAETALRIAFRRDPVETVLVGWTPLGHYELQRKRERAP 330

Query: 476 V 476
           +
Sbjct: 331 L 331


>gi|126729157|ref|ZP_01744971.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37]
 gi|126710147|gb|EBA09199.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37]
          Length = 343

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 117/305 (38%), Gaps = 41/305 (13%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL-- 232
               ++LVQ+       K   VT+ L    R++++  +        +   +      L  
Sbjct: 73  SQGGLILVQVTGFAEPGKALPVTSKLLFKSRHAIVTADAPGINVSRQIRDDDAREAVLEL 132

Query: 233 -KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
             ++     +P G G+ILR++ A      +  D   + +L   V           +    
Sbjct: 133 AHDVLAEAPLPEGAGLILRSSCAGAADDAVAEDILAMSQLAAAVLSDTTGGAELLV---- 188

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
                                          D    L         + +D    F R G+
Sbjct: 189 -----------------------------EGDGPHALAWREWAEPAEVDDAPGSFERHGV 219

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           +  LD+L    V L +   ++I  T AL+++DVN+G  T         L+  + A  ++ 
Sbjct: 220 DEALDALKSPRVALGANASMVIEPTTALIAVDVNTGGDTSPA----AGLKATIAAFRDLP 275

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQLRLR L G +VVD   M  KK+ R VE  LK +LKKD     V   +N GLLE+ R+R
Sbjct: 276 RQLRLRGLGGQVVVDPAPM-PKKDRRQVESALKAALKKDAVETIVVGWTNLGLLELQRKR 334

Query: 472 IRSSV 476
            R  V
Sbjct: 335 DRVPV 339


>gi|294678070|ref|YP_003578685.1| ribonuclease G [Rhodobacter capsulatus SB 1003]
 gi|294476890|gb|ADE86278.1| ribonuclease G [Rhodobacter capsulatus SB 1003]
          Length = 346

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 132/306 (43%), Gaps = 40/306 (13%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
              Q +LVQ+       K   VT  L   GRY ++ P    G  +SR+I     R+ L+ 
Sbjct: 77  SPGQSVLVQVSGGAEPGKAVPVTLRLLFKGRYGIVTPGAP-GLNVSRRIREEDTREGLQA 135

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           +A  +   + MG+ILR+A     + EI  D   L  L + V      +    L+ +    
Sbjct: 136 LAGVVMEGSDMGLILRSACEGAEEGEIVEDIAGLRELAEAVLADLDGAPE--LLVDAPAP 193

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
            + A R+       E++                                  F   G+   
Sbjct: 194 HEEAWREWADPAPDEVVEG--------------------------------FEDHGVLEA 221

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           +D++    V LP  G+++I  T ALV++DVN+G  T        AL+ N+ AA ++ RQL
Sbjct: 222 IDAVLTPRVALPGGGHMMIEPTRALVAVDVNTGPDTS----PAAALKANIAAARDLPRQL 277

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR L G +VVDF  M  KK+   +E++L+ + K + A   +   +  GL E+ R+R R 
Sbjct: 278 RLRGLGGQVVVDFAPM-PKKDRLVLEQQLRTAFKGEAAETSLAGWTPLGLFELVRKRDRV 336

Query: 475 SVLEST 480
           ++    
Sbjct: 337 ALTSLL 342


>gi|260574872|ref|ZP_05842874.1| ribonuclease [Rhodobacter sp. SW2]
 gi|259022877|gb|EEW26171.1| ribonuclease [Rhodobacter sp. SW2]
          Length = 347

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 39/307 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VTT L    R +++ P  S G  ISR+I +   R  L E+
Sbjct: 77  PGQRVLVQVSGTTEPGKALPVTTRLLFKSRLAIVTPGAS-GRNISRRIHDEDTRAGLAEL 135

Query: 236 ARGLEVPAGM--GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           A      A    G+ILR+A       EI  D   +  L   V           +   EG 
Sbjct: 136 AEAAMQGADPTLGLILRSACDGAEADEIADDITAMRDLAQAVLADLEGGPELLV---EGP 192

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
           L +      +     + +                                  F   G+  
Sbjct: 193 LAQEIAWRDWSDPAPDEVADAPGA----------------------------FAAHGVAE 224

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            +D+L   +V LP  G++++  T AL+++DVN+G  T        +L+ N+ AA ++ RQ
Sbjct: 225 MVDALLVPQVALPGGGHMMLEPTRALLAVDVNTGPDTSPA----ASLKANIAAARDLPRQ 280

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G +VVDF  M  KK+   +++ L+ + K + A   +   +  GL E+ R+R R
Sbjct: 281 LRLRGLGGQVVVDFAPM-SKKDRAVLDQVLRAAFKGEAAETSLAGWTPLGLYELVRKRDR 339

Query: 474 SSVLEST 480
             + E+ 
Sbjct: 340 VPLAEAV 346


>gi|221640077|ref|YP_002526339.1| Ribonuclease [Rhodobacter sphaeroides KD131]
 gi|221160858|gb|ACM01838.1| Ribonuclease [Rhodobacter sphaeroides KD131]
          Length = 346

 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 39/308 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q +LVQ+       K   VT  L    R  +L P    G  ISR+I +   R+ L EI
Sbjct: 76  PGQRVLVQVSGVAEPGKAVPVTARLLFKNRLCILTPGAP-GLNISRRIRDEALREELSEI 134

Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
           A          +G+ILR+A  +    EI  +      L + V      +    L+ +   
Sbjct: 135 ASEAMTGAAEDLGLILRSACEAAPDAEIAAEIAETRALAEAVLADV--AGEAELLVDAPG 192

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
             + A RD       EI                             ++    F R G+  
Sbjct: 193 AHQLAWRDWSDPSPDEI-----------------------------DEAEGAFERHGVAE 223

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
             ++L   +V L    ++ +  T ALV++DVN+G  T        AL+ N+ AA E+ RQ
Sbjct: 224 ICEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 279

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G +V+DF  M  K++  ++E+ L+ + + + A   +   +  GL E+ R+R R
Sbjct: 280 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 338

Query: 474 SSVLESTT 481
             + E  T
Sbjct: 339 IPLTELLT 346


>gi|254674065|emb|CBA09849.1| putative ribonuclease [Neisseria meningitidis alpha275]
          Length = 155

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 83/152 (54%)

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR+L G+I++DFIDM ++ +  +V ++L ++L  DR RV +   ++ GL+E++R+R R
Sbjct: 1   MRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLGLVELTRKRSR 60

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            ++ +   + C  C+G G +++  +V   I R +     +Y A +  +    +V+   L+
Sbjct: 61  ENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESFRILAAPNVIDLFLD 120

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           ++  ++       G  I++ +      + + I
Sbjct: 121 EESQSLAMLIDFIGKPISLAVETAYTQEQYDI 152


>gi|213024531|ref|ZP_03338978.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
          str. 404ty]
          Length = 231

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 45/64 (70%)

Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75
          RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG  RHGFLP  EI 
Sbjct: 2  RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA 61

Query: 76 PDYY 79
           +Y+
Sbjct: 62 REYF 65



 Score = 88.9 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----DVKGGSPEDVPKKFK 165
           D+ I +    ++ A I        E S+ +A  D  +                       
Sbjct: 13  DLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAH 72

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I++V++  Q ++VQI KEERGNKGAA+TT++SLAG Y VLMPN  +   ISR+I  
Sbjct: 73  GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 132

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
               + LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ W+ +++ A +  AP
Sbjct: 133 DDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAP 191

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
            L+++E N+I RA RD   +DI EI++   K    A+  +
Sbjct: 192 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHI 231


>gi|84499990|ref|ZP_00998256.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis
           HTCC2597]
 gi|84391924|gb|EAQ04192.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis
           HTCC2597]
          Length = 353

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
              + LLVQ+       K   VTT L    R++++ P    G  +SR++ +   R  L E
Sbjct: 77  SPGEPLLVQVTGHAEPGKAIPVTTRLLFKSRHAIVTPEAP-GLNVSRQVRDEAARDALLE 135

Query: 235 IARGLEVPA-----GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
           IA              G+ILR++     +  +  D   +  L   V      +       
Sbjct: 136 IAHDTLAGHAILDRNGGLILRSSCEGADEEAVAEDIRAMADLAVQVLGDVAGAPEKL--- 192

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
                                            D              Q E         
Sbjct: 193 ------------------------------TEGDGPHATAWREWTEPAQIETEAGCLEDH 222

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
           GI  ++++L +  VTL S   + +  T A  ++DVN+G  T         L+ NL  A +
Sbjct: 223 GILEKIEALLRPAVTLGSAT-MFVEPTRAFTAVDVNTGGDTSLA----AGLKANLATARD 277

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           + RQLRLR L G I++D   M  KK+ R+ E  L+ +L+ D     +   +  G  E+ R
Sbjct: 278 LPRQLRLRGLGGQIILDLAPM-PKKDRRTFETVLRAALRADDTDTVLAGWTPLGNYELQR 336

Query: 470 QRIRSSVLESTTKV 483
           +R R  + +  T+ 
Sbjct: 337 KRARQPLTQIVTEE 350


>gi|257462244|ref|ZP_05626661.1| putative ribonuclease [Fusobacterium sp. D12]
 gi|317059913|ref|ZP_07924398.1| ribonuclease G [Fusobacterium sp. D12]
 gi|313685589|gb|EFS22424.1| ribonuclease G [Fusobacterium sp. D12]
          Length = 425

 Score =  118 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 19/347 (5%)

Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233
               Q  +VQ+++EER  K A V+  + +   Y V  P   +G  +SRKI    +R+ L+
Sbjct: 64  FPEGQEKIVQVLQEEREGKLAEVSQKIEMTTPYFVFFPYE-RGVHLSRKIQEKEERERLE 122

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
            I +          ++RT    + +  +K + + +++ W+ +++ A        +     
Sbjct: 123 NIFQPYRER--ASFLIRTEAKGQQEETLKEEIQKMLKEWEQIQKKAFELRERGNLRTSLP 180

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
            ++  +     K+             E ++ ++  +  Y + +R+Y     ++ +  +E 
Sbjct: 181 WMEEFLEQYGKKEWKSCYCEN----FECQELLEKNLSFYQKRLREYHGDISLWKQRKLEE 236

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
           Q+  L Q +V LPS GY+ I +T+A V+IDVN G +             NLEAA+EI RQ
Sbjct: 237 QIAQLCQEKVYLPSGGYLFIEKTKACVTIDVNRGPAGLHAS--------NLEAAKEIPRQ 288

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR+LAG++V+DFI  ++ +  + +   LK     D   +  G    F +   SRQR  
Sbjct: 289 VRLRNLAGMVVIDFISNKKSEERKEIIDTLKREFSTDNHFLTWGGFHEFDVFLFSRQRKG 348

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520
             +     K   +      ++   +    +L   E  L      NI+
Sbjct: 349 KELSSYYDKNNVF----YQVQCLENECKELLEKGENILSVEAEKNIL 391


>gi|242054377|ref|XP_002456334.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor]
 gi|241928309|gb|EES01454.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor]
          Length = 651

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 124/380 (32%), Gaps = 86/380 (22%)

Query: 5   MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
           +L+++S     R+ VL D ++ EL  E         +IYL  VT++ P +  AFVD G +
Sbjct: 241 ILMNSSVCTIQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGIS 300

Query: 65  RHGFLPFLE-----IHPDYYQI----PFSDR----------------------------- 86
           R   +   +     ++P  ++     P  D                              
Sbjct: 301 RPSLMSIKQNRDPFVYPQVFKNRGTDPIDDSYCNEENLPTYENDDDMSDDEFENEETHDG 360

Query: 87  -----QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
                + +          S+A  ++V   +    + +  ++     +   E  E+ +   
Sbjct: 361 SSFPVENITDNEEAVVLASDAKINNVDGDEFDSISVYDEDKDEENDHMEDEYSEDILQGD 420

Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201
            +++ ++++ +                     ++    ++VQ++KE  G KG  ++ +  
Sbjct: 421 QSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVIKEGLGTKGPTLSPFPC 480

Query: 202 LAGRYS-------------------VLMPNT----------------------SKGETIS 220
           L  R+                     + P+                            +S
Sbjct: 481 LRSRFWVANNRSSIVLFTFHLVPQIKINPHYLQEILGLTSAVYLLSLQILVSRGNKVGVS 540

Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280
           +KIT     +   +    L  P G  +  RT  A  +  E+++D + L+  W  + E A 
Sbjct: 541 KKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHSWEELQKDLDGLLSTWKGITEHAQ 598

Query: 281 NSVAPHLVYEEGNLIKRAIR 300
           ++        EG +     R
Sbjct: 599 SAALAAEEGVEGAVPVMLHR 618


>gi|330722233|gb|EGH00119.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [gamma
           proteobacterium IMCC2047]
          Length = 153

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 73/136 (53%)

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489
           M E ++ R V + L+++L+KD A+  +  +S+ GL+EM+R+R R ++ +   + C  C+G
Sbjct: 15  MLEAEHQRQVMRMLEKALEKDHAKTNIIGMSDLGLVEMTRKRTRENLRQILCETCPECQG 74

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            G +++  +V   I+R +      Y +++ +V     V   L+ ++ ++I + EA    +
Sbjct: 75  IGTVKTPETVCYEIIREIVRQARTYNSNSFLVVASPSVADKLMEEESSSIADLEAFINKN 134

Query: 550 INVVIGIELADKLFYI 565
           I V   +  +   F +
Sbjct: 135 IKVQAEVMYSQSEFEV 150


>gi|319651716|ref|ZP_08005842.1| hypothetical protein HMPREF1013_02454 [Bacillus sp. 2_A_57_CT2]
 gi|317396535|gb|EFV77247.1| hypothetical protein HMPREF1013_02454 [Bacillus sp. 2_A_57_CT2]
          Length = 175

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 85/137 (62%)

Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394
            +R +     IF    +E ++D   +  V L +  Y+I ++TEAL  IDVN+G+   +  
Sbjct: 17  PIRLHSGKENIFSAFNVESEIDKALKRIVWLETGAYLIFDETEALTVIDVNTGKFAGKQD 76

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
             +T L+TN +AAEE ARQ+RLRD+ G+I++DFIDM+E  +   +   ++ +LKKD  R 
Sbjct: 77  RRETVLKTNQQAAEEAARQIRLRDIGGMILIDFIDMKEASDRNHILSTMENALKKDERRT 136

Query: 455 QVGAISNFGLLEMSRQR 471
           ++   +  G+L+M+R++
Sbjct: 137 KLVGFTPLGILQMTRKK 153


>gi|317496735|ref|ZP_07955065.1| ribonuclease E/G family protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895747|gb|EFV17899.1| ribonuclease E/G family protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 244

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 7/249 (2%)

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                V    G ILRT  A   K ++  + + L   +  +        APHLV    + +
Sbjct: 1   MAETLVTQEYGFILRTEAAKADKEDVLMEADQLSAKYHEIVSKRQYRKAPHLVDTNYDAL 60

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
           +  + D+    I  I+   E+   + K+    +                I  R      L
Sbjct: 61  EVLVHDIKPGSIDRIVTDQEEVGEQLKEKGYEV-------FLCSYMAGDIERRYRFRHYL 113

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
             + + ++ + S G++ I QTEA+  IDVN+G+S  +   E    + NLEAA+E ARQ+R
Sbjct: 114 SEVFKRKIFMKSGGFLYIEQTEAMAVIDVNTGKSIGKKNQEAHIKKINLEAAKEAARQIR 173

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR+L+G+I++DFIDM+ K + + + + ++  L  D  +     I+  G++E++R++ ++ 
Sbjct: 174 LRNLSGIIMIDFIDMKSKDDEKELLQVMQHYLNGDSKKAVAVDITKLGIMEITRKKEKNP 233

Query: 476 VLESTTKVC 484
           +    +   
Sbjct: 234 IFRQISIDI 242


>gi|83945211|ref|ZP_00957560.1| ribonuclease E [Oceanicaulis alexandrii HTCC2633]
 gi|83851381|gb|EAP89237.1| ribonuclease E [Oceanicaulis alexandrii HTCC2633]
          Length = 346

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 7/219 (3%)

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               ++   D   +  V+LP  G ++I    A+  IDV+S     +      AL  N  A
Sbjct: 132 AEVELDQLFDEALEAVVSLPGGGRLVIEPVTAMTVIDVDSAGRQSQGGSPKMALDLNKTA 191

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
           A E ARQ+RLR + G++ +DF+ +++K++   +++ LK + K+D A++ V   S F ++E
Sbjct: 192 ARETARQIRLRGIGGVVAIDFLPLKKKQDQSQLDQSLKGAFKRDPAKIDVAPASRFAIVE 251

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           +SRQR+  ++ E        C     + S  + AL+ LR +E          + +   ++
Sbjct: 252 LSRQRLGRALHEI-------CWERFGVESVETRALAALRRLEAEGKAKRGGRLALLAGAE 304

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
           V  +L           ++R G    +V+      + F +
Sbjct: 305 VHAWLEKDPIGWSKAMKSRLGDRFELVLDEARGARDFEV 343



 Score = 70.8 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 14 ETRVVVLRDNRVEELDFES---EHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70
          ETR  V+  +R  EL  E      K+  +G +Y A+VT+++ ++  AF D G    GFLP
Sbjct: 3  ETRAAVIDGDRAVELHVERWSERGKRAWRGEVYRARVTKIDHAINGAFCDIGRGPAGFLP 62

Query: 71 F 71
          F
Sbjct: 63 F 63


>gi|146276653|ref|YP_001166812.1| ribonuclease G and E-like protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554894|gb|ABP69507.1| Ribonuclease G and E-like protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 346

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 118/307 (38%), Gaps = 39/307 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV--DRKNLK 233
             Q LLVQ+       K A VTT L    R  +L P    G  ISR+I +       +  
Sbjct: 76  PGQRLLVQVSGVAEPGKAAPVTTRLLFKSRLCILTPGAP-GLNISRRIRDEDLRAELSAL 134

Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
                      +G+ILR+A       EI  +      L + V      +  P L+ +   
Sbjct: 135 AAEAMAGADEDLGLILRSACEGAPDSEIAAEIAETRALSEAVLADL--AGDPELLVDAPG 192

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
               A RD       EI                             ++    F R G+  
Sbjct: 193 AHHLAWRDWSDPPPDEI-----------------------------DEAEGAFARHGVAD 223

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
             D+L    V L    ++ +  T ALV++DVN+G  T            N+ AA E+ RQ
Sbjct: 224 LCDALLSPLVPLGGGAHMAVEPTRALVAVDVNTGADTSPAAALKA----NVAAARELPRQ 279

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G + +DF  M  KK+  ++E+ L+ + + + A   +   +  GL E+ R+R R
Sbjct: 280 LRLRGLGGQVAIDFAPM-PKKDRVALEQVLRAAFRGEAAETSLAGWTPLGLYELVRKRDR 338

Query: 474 SSVLEST 480
             + E  
Sbjct: 339 LPLTELL 345


>gi|89055360|ref|YP_510811.1| ribonuclease [Jannaschia sp. CCS1]
 gi|88864909|gb|ABD55786.1| ribonuclease Rne/Rng family [Jannaschia sp. CCS1]
          Length = 344

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 103/304 (33%), Gaps = 40/304 (13%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
              ++LVQ+       K A VT  L    RY+++ P                  + L+  
Sbjct: 78  PGDVVLVQVSGVAEPGKAAPVTPDLIFKSRYAIVTPRKPGLNVSRAIRDEDERDRLLEIA 137

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
                  +G G+I+R++        +  D   +     +V      +             
Sbjct: 138 HDSAASASGFGLIVRSSAEGVLADVLSEDIAAMCATAADVMVEEAGAP------------ 185

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                        E ++  +  + +A                  E     F   G+   +
Sbjct: 186 -------------EWLLDADDAHVQAWR----------DWDTPDEVIEGGFADHGVLEAV 222

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           D+       LP      I  T AL+++DVN+G            L+ NL    E+ R  R
Sbjct: 223 DAALSPHQPLPGGASAFIEATRALIAVDVNTG----TDHSLAAGLKANLALVRELPRLTR 278

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           ++ L G   +D   M  K++ + VE  +K++ +     V V   +  G LE++ +R R+ 
Sbjct: 279 IKGLGGQFTLDLAPM-PKRDRKQVEDAVKKAFRLGGGDVVVAGWTPLGNLELTSKRDRAP 337

Query: 476 VLES 479
           + + 
Sbjct: 338 LAQV 341


>gi|46190682|ref|ZP_00121242.2| COG1530: Ribonucleases G and E [Bifidobacterium longum DJO10A]
          Length = 881

 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 160/342 (46%), Gaps = 11/342 (3%)

Query: 85  DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           DR  +++E       S    + +    V+   +        +               +  
Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602

Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
              N     G    D  +   +   I+   K+   +LVQ+ K+  G+KGA +T+ ++LAG
Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662

Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
           R+ VL+P+        +        ++  +       P  MGVI+RTA    ++  I +D
Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719

Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            E L+R W+ +        +   P L+  E ++  R +RD++  D S++IV G+K Y   
Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779

Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
           ++++  + P     + +++         F +  I+ QL    + +V LPS G ++I++TE
Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839

Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRD 418
           A+ +IDVN+GR   +   +E+T  + NLEA+EEIARQLRLRD
Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRD 881



 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ V+ DN + E       + Q  GNIYL +V  V PS++AAFVD G  R+G L   E+
Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614

Query: 75  HPD 77
           + D
Sbjct: 615 NWD 617


>gi|126726690|ref|ZP_01742530.1| hypothetical protein RB2150_17209 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704019|gb|EBA03112.1| hypothetical protein RB2150_17209 [Rhodobacterales bacterium
           HTCC2150]
          Length = 344

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 39/301 (12%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             + +LVQ+       KG  VT  L    +++++ P+   G  ISR I +   R  L+  
Sbjct: 77  PGETMLVQVTGVTEPGKGIPVTDRLLFKSKFAIVTPDRP-GLNISRSIQDEDIRLALRAA 135

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
              L     MGVI+R+  A    +E+  D   ++ L   +      +        +    
Sbjct: 136 VEPLCEDDRMGVIIRSIAAEADPLEVAEDTAEMLDLAHAMEAERTGAPQLLFNGPD---- 191

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                           +      +    E     F  +G+  Q+
Sbjct: 192 -----------------------------AHHMAWREWGMPDDVETEMGCFEHTGVLEQM 222

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           +++    + L   G + +  T ALV++DVN+G            L+TN+ AA  + R LR
Sbjct: 223 EAIFADGMALAGGGTLFVEPTRALVAVDVNTG----ADGSPMAGLKTNIAAARALPRALR 278

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           LR L G IVVDF  M  KK+ + +E+ L  + KKD     +   +  G  E+ R+R R+ 
Sbjct: 279 LRGLGGQIVVDFAPM-AKKDRKQLEQVLTAAFKKDTTETNLVGWTTMGNFELQRKRERAP 337

Query: 476 V 476
           +
Sbjct: 338 L 338


>gi|172058119|ref|YP_001814579.1| ribonuclease G and E-like protein [Exiguobacterium sibiricum
           255-15]
 gi|171990640|gb|ACB61562.1| Ribonuclease G and E-like protein [Exiguobacterium sibiricum
           255-15]
          Length = 445

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 139/319 (43%), Gaps = 23/319 (7%)

Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221
           +++     I + ++  Q LLVQ+VKE    K   VT  ++  GR+ V  P   +    SR
Sbjct: 75  RRYPEVPTIGQAVQVGQTLLVQVVKEGAAPKQHKVTQNITYGGRFLVYFP-YGRRVRFSR 133

Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281
           K+    D    +++A+ + V    G++ RT  A       + +   LM     +R    +
Sbjct: 134 KL----DLVVQQQLAKVIPVAEEEGILYRTEAA-------QAEVGVLMTELKQLRARHQH 182

Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341
            +    + ++  LI   I++          +   +  +E  + M L +       R    
Sbjct: 183 MLQQATLEQDEPLI---IQEAKRLSHVAEALVTTRAEKERLEQMGLQVERPVIKGRLPVM 239

Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401
                    ++  ++      V L    Y++I + E +  IDVNSG++      + T  Q
Sbjct: 240 EQ-------VDRAIEKALDRVVWLDGGAYLLIEEVETMTVIDVNSGKTVSVKEQKRTFDQ 292

Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461
            N  AA EI RQLRLR+++G+I VDF+     K    V + LKE    +  +++V   + 
Sbjct: 293 INEAAAVEIMRQLRLRNISGMIAVDFLR-GSSKGQTRVTQLLKERAAHESKQIEVYGFTK 351

Query: 462 FGLLEMSRQRIRSSVLEST 480
            GL E++RQR   S+ E +
Sbjct: 352 MGLCELTRQRHGKSLFERS 370



 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58
          RV ++   RV E   E    +   G +  AKV R+ P+L+AAF
Sbjct: 13 RVALVEGGRVVEYH-ERMRDEIRVGTLLHAKVDRLHPTLEAAF 54


>gi|255027992|ref|ZP_05299978.1| hypothetical protein LmonocytFSL_19213 [Listeria monocytogenes FSL
           J2-003]
          Length = 179

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 92/178 (51%)

Query: 310 IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369
              +  +   +  +F K+L   Y       +    +F   GI+ Q+D L +  V L +  
Sbjct: 2   QRYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQMDRLARPVVHLSNGS 61

Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429
            + I +TEA+  +DVNSG+       E T    NL+A  EI RQ+RLR+++G+I+VDFI 
Sbjct: 62  SLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIG 121

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
              +     +   L+   +++    QV A+S  GLL+++R++ + S LE+TT  C  C
Sbjct: 122 GMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVC 179


>gi|8101758|gb|AAF72648.1|AF259270_1 ribonuclease E [Pectobacterium carotovorum]
          Length = 64

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFVDYG
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61

Query: 63 GNR 65
            R
Sbjct: 62 AER 64


>gi|229918392|ref|YP_002887038.1| ribonuclease G and E-like protein [Exiguobacterium sp. AT1b]
 gi|229469821|gb|ACQ71593.1| Ribonuclease G and E-like protein [Exiguobacterium sp. AT1b]
          Length = 441

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 25/320 (7%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
            +     I +     +  LVQ+ KE    K   VT  +   GRY V  P   + +  SRK
Sbjct: 75  SYPEVPAIGQAAVVGEKRLVQLTKEGINGKHHKVTENIRFGGRYLVYFPF-GRRQLFSRK 133

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           +      +  K     L++    GV+ RT         ++ +   L      V E     
Sbjct: 134 LDLVTQDRLSKA----LDLTEEEGVLFRTEAGQVAPEALQEELNRLRHRSIVVIEQR--- 186

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
                  ++  L ++ +R        E ++  +K  +   +            V+++   
Sbjct: 187 -----FGQDELLCEQFVRRHA----VESVLLNDKEGQSRLE-------RLDVPVKRHIGK 230

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
             +     ++  ++ L    V L    +V+I Q E +  IDVNSG++         A   
Sbjct: 231 GRMPEAKHLDGAIEKLESRAVWLDGGAFVLIEQVETMTVIDVNSGKNVAVKDKGRAADTI 290

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
           N  A   I  QLRLR++ G+IV+DF+    K+    + KK+KE   +D  RV+V   +  
Sbjct: 291 NEAALYSIMEQLRLRNIGGMIVIDFLR-GSKEGQTRLLKKMKELGARDPRRVEVYGFTRM 349

Query: 463 GLLEMSRQRIRSSVLESTTK 482
           GL E+SR+R   S+ +    
Sbjct: 350 GLFELSRERTGRSIQDRMFH 369


>gi|119384529|ref|YP_915585.1| ribonuclease [Paracoccus denitrificans PD1222]
 gi|119374296|gb|ABL69889.1| ribonuclease [Paracoccus denitrificans PD1222]
          Length = 353

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 114/300 (38%), Gaps = 37/300 (12%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +  Q LLVQ+       K   V+  L+  GR+ ++ P         R   + +     + 
Sbjct: 77  REGQSLLVQVNGSAEDGKAVPVSARLNFRGRHVIVTPGAPGVNVSRRIRDSALRDALTRL 136

Query: 235 IARGLEVPAGM-GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293
               LE      G++ R+  A+     I  + E L+ L   V      +    L   E  
Sbjct: 137 GEAALEGLEDPPGIVFRSIAATAGSDGIAAELEQLLELAQAVTADHQGAPELLLDAPE-- 194

Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353
                                ++ +++  D                ED    F  +G E 
Sbjct: 195 -------------------PADQAWQDWAD----------PPPDSVEDGDDAFEATGAEA 225

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
            +  +    + L    +  I    ALV+IDVN+G            L+ N+  A ++ RQ
Sbjct: 226 AVLQMLHPRLDLGGGAWAEIEALRALVAIDVNTGS----DHSPAAGLKANIALARDLPRQ 281

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LRLR L G IV+DF  M  K++  ++E+ L+ + + + A   +   +  GL E+SR+R R
Sbjct: 282 LRLRGLGGQIVIDFAPM-PKRDRGTLEQVLRAAFRSESAETVLIGWTAMGLYELSRKRDR 340


>gi|254294126|ref|YP_003060149.1| ribonuclease G and E-like protein [Hirschia baltica ATCC 49814]
 gi|254042657|gb|ACT59452.1| Ribonuclease G and E-like protein [Hirschia baltica ATCC 49814]
          Length = 362

 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 11/214 (5%)

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412
             +D   QT+  L   G + +  T AL+S+DV++G    +      A++TNL AA+ IA 
Sbjct: 155 EAIDEALQTKCNLIGGGCIYVEPTRALISVDVDAGNRINKGNRSQFAVETNLLAADAIAN 214

Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD-RARVQVGAISNFGLLEMSRQR 471
           +L L  LAGL+V+DF+ M  K++   V    + +L K    + Q+  +S FG+LE++   
Sbjct: 215 KLSLSSLAGLVVIDFLKMTTKEHAIQVPSAFEGALSKYLGRKSQLARLSQFGILEVNIAH 274

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
             S +      +           +    AL  LR +E           + +    +  +L
Sbjct: 275 TFSPIPHIVASLD----------NGEWYALRFLRELERQATGSRGAFFLCNVSQRIHRWL 324

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
                        R G    +V    L    F I
Sbjct: 325 QASSIEWSKRLVERIGKRFEIVEDATLEKSEFKI 358


>gi|83949644|ref|ZP_00958377.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM]
 gi|83837543|gb|EAP76839.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM]
          Length = 345

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 114/298 (38%), Gaps = 39/298 (13%)

Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235
             Q LLVQ+       K   VT  +    RY+++ P    G  ISR I +   R  L E+
Sbjct: 75  PGQTLLVQVTGHAEPGKAIPVTAKILFKSRYAIVTPEAP-GLNISRSIRDDDRRDALLEL 133

Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295
           A      + MG+ILR+A       EI  D   +  L + +   A  +    L        
Sbjct: 134 AHAGMEGSAMGLILRSAAEEAEAEEIAEDIAAMRSLAEEITADAEGAAEVLL-------- 185

Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355
                                      D    L      +          F R  +  QL
Sbjct: 186 -------------------------EGDGPHGLAWRDWAMPADVITEPGGFAREEVLDQL 220

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           ++L Q  V L     + I  T ALV++DVN+G  T          + NL AA E+ RQLR
Sbjct: 221 EALRQDAVPLSGGASMWIEPTRALVAVDVNTGGDTSPA----AGHKANLAAARELPRQLR 276

Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           LR L G +V+D   M  KK+ R  E  L+ + + D+    +   +  G  E+ R+R R
Sbjct: 277 LRGLGGQVVLDLAPM-PKKDRRGFESTLRAAFRADQVETALVGWTPLGHYELQRKRDR 333


>gi|306821354|ref|ZP_07454962.1| possible bifunctional ribonuclease G/cytoplasmic axial filament
           protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550572|gb|EFM38555.1| possible bifunctional ribonuclease G/cytoplasmic axial filament
           protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 451

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 164/406 (40%), Gaps = 20/406 (4%)

Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
               +++   S           +   +   +  + L QI K     K   ++  ++L+GR
Sbjct: 49  KKKRQNISMKSSALSLDSEITGFMQGQDGYDADMSLCQIKKIFANEKNPKLSREITLSGR 108

Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
           Y V +   S+G +IS K  +     +LK      +      VI+R+  +      I  + 
Sbjct: 109 YVVFI-GGSRGLSISNKAGDKTMLDDLKSKIED-KTIEKAKVIIRSQASLEDIDAILLEI 166

Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
           E   + +D + + +     P L+Y +    +  +  +                 + +   
Sbjct: 167 EEFEKTYDEILQKSKLISKPQLLYRQYESEEMFLSKINT-------QVDLLITNDKQSVK 219

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
            L    +A     YE    +F + GI+ ++  L   +VTL +   + I  TEA+  IDVN
Sbjct: 220 FLEKSRFAPREIIYEKEADLFIKYGIDTEIRQLLDEKVTLKNGINLFIQSTEAMSIIDVN 279

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           S    +       A   N    EEI RQ+ LRD++G+I++DFIDM ++K ++ +++ + +
Sbjct: 280 SAGYFKYKDFSQNAYHVNHLVCEEIVRQICLRDISGVILIDFIDMRDEKLSKKLQEHISK 339

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
            L+KD  +  V  +SN  ++++ R++   ++ E+             +++   +   +  
Sbjct: 340 CLEKDDRKSTVSKLSNSDIMQIIRKKEDITIEENLIDT------KITLKNIEYIFEEVDS 393

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +   ++      I +        +   +    +   E ++ V I+
Sbjct: 394 KI-SNVISEDTKKITIDMPI----FESVKANNYLSILENKYNVKIS 434


>gi|218658581|ref|ZP_03514511.1| probable ribonuclease protein [Rhizobium etli IE4771]
          Length = 222

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 146/184 (79%), Positives = 162/184 (88%)

Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
            LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+NVR L L S AP LVYE
Sbjct: 1   RLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVYE 60

Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350
           EG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LMPS+A++V+ Y D HPIF RSG
Sbjct: 61  EGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSG 120

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           IE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRSTREH IEDTALQTNLEAAEEI
Sbjct: 121 IEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAEEI 180

Query: 411 ARQL 414
           ARQL
Sbjct: 181 ARQL 184


>gi|126735247|ref|ZP_01750993.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. CCS2]
 gi|126715802|gb|EBA12667.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. CCS2]
          Length = 344

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/310 (25%), Positives = 119/310 (38%), Gaps = 40/310 (12%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +  Q LLVQ+       K   VT  +    RY+++ P    G  ISR+IT+   R  L  
Sbjct: 75  RPGQPLLVQVTGIAEDGKAVPVTDRVLFKSRYAIVTPGKP-GLNISRQITDEDVRDGLLA 133

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           IA  +      G+I+R++     K E+  D   ++ L D V + A  +    L   +G  
Sbjct: 134 IAHEVFDSP-HGLIMRSSCEGADKAEVAEDIVAMLSLADAVLDDAAGTTPEALTEGDGP- 191

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
                                            +                 F   G+  Q
Sbjct: 192 -------------------------------HAVAWREWTGAADVVTEAGAFEGLGVLDQ 220

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           LD+L Q  V L   G++ +  T ALV++DVN+G  T         L         + R L
Sbjct: 221 LDALAQPRVALGE-GHMYVEPTRALVAVDVNTGNDTSPAAALKANLAAARA----LPRAL 275

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR LAG I VDF+ M  K + + VE+ L+ S + D     +   +  GL EM R+R R 
Sbjct: 276 RLRGLAGQITVDFVSM-SKAHRKQVEQSLRASFRADPIETSLVGWTPMGLFEMQRKRERP 334

Query: 475 SVLESTTKVC 484
              +   K  
Sbjct: 335 PFPKHLLKDI 344


>gi|317471318|ref|ZP_07930677.1| ribonuclease E/G family protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901211|gb|EFV23166.1| ribonuclease E/G family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 227

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +RT   +  + +I R+   L   +  +RE         L+    +   R +  L      
Sbjct: 1   MRTEAENADQDKIGREAASLAERYVQIREKQQYMKPCRLLATNQSFSSRYVFGLSPSRAE 60

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
            II   E         ++    +  ++ R       I     +   L+++  T V L S 
Sbjct: 61  RIISDDEVI-------LREAEENGYQVRRMDRQDQSIERGYRLSHALEAVFHTRVWLRSG 113

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
           G++II +TEA+  +DVN+G+S      E   ++ N EAA E ARQ+RLR+L+G+I+VDFI
Sbjct: 114 GFLIIERTEAMTVVDVNTGKSIGRGQKEGHIIKINREAARETARQIRLRNLSGIILVDFI 173

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           DM+EK+    +   ++  L +D  +     ++  GL+E++R++IR  + +
Sbjct: 174 DMKEKEEEGRLLSYMQTMLNRDSKKAVAVDMTKLGLMEITRKKIRRPLEK 223


>gi|302670803|ref|YP_003830763.1| ribonuclease Rne/Rng family [Butyrivibrio proteoclasticus B316]
 gi|302395276|gb|ADL34181.1| ribonuclease Rne/Rng family [Butyrivibrio proteoclasticus B316]
          Length = 385

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 127/317 (40%), Gaps = 36/317 (11%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR----- 229
           KN   ++VQI  E    K A +TT LS++G+YSV+    S      +             
Sbjct: 88  KNGDEIIVQIDSEAIKTKKAKLTTALSVSGKYSVITVGRSGVGASVKLSDEVRRHLVDST 147

Query: 230 ----KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
                N+++        + +G+I+RT      +   + +    ++               
Sbjct: 148 RNIFNNIRDEYCDRLYGSDIGLIIRTNAGEIPEEAFEAEISDDIKNCAE----------- 196

Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345
                         R                 Y    + +                    
Sbjct: 197 --------------RVATILSEGRSRTIYTCLYHAGVNNLDRAKSFMKNAGIIDCRVIED 242

Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405
               GI  ++D L Q  + L S  ++II Q E+  +IDVN+G++ +       +L+ NLE
Sbjct: 243 NGIHGIRSKIDELRQNRIWLKSGAFIIIEQLESFNAIDVNTGKAIKGKSNI--SLEVNLE 300

Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465
           AA EI RQ+RLR+L G+I++DFI+M++ ++   +   +K+  ++D+       I+  G++
Sbjct: 301 AANEIMRQVRLRNLTGMILIDFINMKQDEDYEKLIAHMKKLCRQDQIHTNYVDITGLGIM 360

Query: 466 EMSRQRIRSSVLESTTK 482
           E++R +   S+ E   +
Sbjct: 361 ELTRNKNDKSLKEILHE 377



 Score = 43.8 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
          D R+E L FE ++      +IY+ KV  +  +L AAF+ Y     G+LP  +I
Sbjct: 22 DGRMEFLSFERDNH---INDIYIGKVDHIVKNLNAAFIKYDSENIGYLPLDKI 71


>gi|154482904|ref|ZP_02025352.1| hypothetical protein EUBVEN_00601 [Eubacterium ventriosum ATCC
           27560]
 gi|149736188|gb|EDM52074.1| hypothetical protein EUBVEN_00601 [Eubacterium ventriosum ATCC
           27560]
          Length = 154

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 82/141 (58%)

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
                +  +  +E  L+ L   +V L S  Y+II  TEAL  IDVN+G++  +   E T 
Sbjct: 7   NSKISLCNKYSLETHLNRLLSKKVWLKSGAYLIIEPTEALTVIDVNTGKADLKTNKESTF 66

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            + NLEAA+EIA Q++LR+++G+I+VDFI+M   K+   +  ++ E L  D +   V  I
Sbjct: 67  KKINLEAAKEIALQMKLRNISGIIIVDFINMSNNKDYDILTHEMSEYLTNDFSISNVVDI 126

Query: 460 SNFGLLEMSRQRIRSSVLEST 480
           +  GL+E++R++   S+ E  
Sbjct: 127 TKLGLMELTRKKKEKSLEEIV 147


>gi|308806017|ref|XP_003080320.1| COG1530: Ribonucleases G and E (ISS) [Ostreococcus tauri]
 gi|116058780|emb|CAL54487.1| COG1530: Ribonucleases G and E (ISS) [Ostreococcus tauri]
          Length = 670

 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 182/496 (36%), Gaps = 82/496 (16%)

Query: 19  VLRDNRVEELDFESEH-----KKQIKGNIYLAKVT-RVEPSLQAAFVDYGGNRHGFLPFL 72
           ++ D  V E+  ES +     K    G++YLA V  +V P++++  V  G    G     
Sbjct: 188 LVEDGEVVEV-LESANEAHDDKGARVGDVYLATVVGKV-PNMRSVLV--GVEMKG----- 238

Query: 73  EIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132
               D +      + ALL++   A        +    G      +   EE          
Sbjct: 239 ----DRF-----TKTALLRDGLSAPAAWWKGVESDRVGIDASYFEAQYEEEEEEDANLGP 289

Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
             + S  S+ N                  K     Y I         ++V+I ++ R NK
Sbjct: 290 NYKLSNQSSQN---------ASEQLVRAGKYAFGLYDI------GDSVIVEITRDSRENK 334

Query: 193 GAAVTTYLSLAGRYSVLM-PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG----- 246
           GA  +   SL GR++V     T      S+K++        +   + LE   G       
Sbjct: 335 GAIASAEPSLTGRFTVFEGTATGTSARASKKLSVVSRDFLAQWGTKALEKVWGNRAQKLN 394

Query: 247 ------------VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE---- 290
                       +I+R+A    +   + R+  +L   W +V   A  SV           
Sbjct: 395 ERFPDMRGGGAHLIMRSASVGASSEVLTREVRHLASTWTSVLVRAAKSVEKARERRYPLR 454

Query: 291 -------EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343
                  +       +R+L   +IS +++  +      K+    +    A          
Sbjct: 455 PRLLWRDDITFKDAILRELCSLNISSVVLPNDAAPETVKELAHSVSILRADTADL-NTEI 513

Query: 344 PIFFRSGIEVQLDSL--HQTEVTLP--SRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
                  +   +      +  V LP      ++I  TEAL +IDVN+G        + + 
Sbjct: 514 RTEDPDKMRQLVQRAIRFEERVPLPGTQSAQLVIQGTEALTAIDVNTG------SCKKSI 567

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN---NRSVEKKLKESLKKDRARVQV 456
            + N+ AA   A ++R R+++G+IV+DF+++  ++     R +E +   +  +DR ++  
Sbjct: 568 AEINVIAARTAALEIRRRNISGIIVIDFVNVHPRQRDQVYRQIEAEFAHAAVRDRGKISF 627

Query: 457 GAISNFGLLEMSRQRI 472
             IS FGLL+++R  I
Sbjct: 628 TPISPFGLLQITRSHI 643


>gi|299143818|ref|ZP_07036898.1| ribonucleases G and E [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518303|gb|EFI42042.1| ribonucleases G and E [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 364

 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 129/311 (41%), Gaps = 18/311 (5%)

Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229
           I   IK    +LVQI K    NK   +T  LS+ G+Y +  P     +    K  N   +
Sbjct: 70  IDGDIKVGDDILVQIKKIPEENKLVKLTMELSVDGKYIIYFPMEKFVKFS--KNLNFEKK 127

Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
             LK+ A    +    GV+ RT   +    EI  ++  L  + + +         P L+Y
Sbjct: 128 NELKKFAVKNNLR---GVLFRTNANNAQTDEILEEYSELFDIGNKLIREKNLRPTPKLIY 184

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349
                            + + +           + ++L      +    Y+    I +  
Sbjct: 185 -------------CKSGVEDFLRDNVVDEDVIINDIQLYNTYKNKYNLIYDKDFKIIYNR 231

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            I      L    V L S   ++I +T AL SIDVN+         EDT  + N EAA E
Sbjct: 232 EILEDYKKLFLKTVKLKSGANIVIEETAALSSIDVNTANFVGNLDFEDTIFKVNEEAAVE 291

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
           IARQ+ LR+++G+I++DFIDM+     + + K L+   KKD +R  V   +   L+E+SR
Sbjct: 292 IARQIILRNISGIIIIDFIDMKTYSEKKKILKILQREFKKDFSRTVVYGFTKLNLVEISR 351

Query: 470 QRIRSSVLEST 480
           + +   +    
Sbjct: 352 KNLGVKLKNKL 362



 Score = 49.2 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 18/225 (8%)

Query: 23  NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIP 82
           NR+++L+ ES  +     +IY  +V  +  S+ A FV+ G   +G+L   +I  D   I 
Sbjct: 26  NRIQDLE-ESRIR-----DIYRGRVENIVHSMNAVFVNIGTE-NGYLNLEDIDGD---IK 75

Query: 83  FSD--RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
             D     + K     +     +   V    +         + +   NF ++ E +    
Sbjct: 76  VGDDILVQIKKIPEENKLVKLTMELSVDGKYIIYFPMEKFVKFSKNLNFEKKNELKKFAV 135

Query: 141 ANN------DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194
            NN         +N         E           I+E        L+            
Sbjct: 136 KNNLRGVLFRTNANNAQTDEILEEYSELFDIGNKLIREKNLRPTPKLIYCKSGVEDFLRD 195

Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239
            V     +     +     +K   I  K    +  + + E  + L
Sbjct: 196 NVVDEDVIINDIQLYNTYKNKYNLIYDKDFKIIYNREILEDYKKL 240


>gi|310816489|ref|YP_003964453.1| ribonuclease, Rne/Rng family [Ketogulonicigenium vulgare Y25]
 gi|308755224|gb|ADO43153.1| ribonuclease, Rne/Rng family [Ketogulonicigenium vulgare Y25]
          Length = 347

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 119/309 (38%), Gaps = 43/309 (13%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
              Q +LVQ+       K   VT  +    R++++ P    G  ISR+I +  +R  L  
Sbjct: 73  HPGQAMLVQVTGIAEDGKAVPVTDRVLFKSRFAIITPGAP-GRNISRQIDDEEERDRLAA 131

Query: 235 IARGLEVPAGMGV---ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
           IA      A  G    I+R++ A   + +I  D   ++ L   V   A  +    L   +
Sbjct: 132 IAHEAMEGADEGTFGLIIRSSAAGADEDDIYDDIREMLDLAVAVMADAEGTEPEALTEGD 191

Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351
           G     A R+    DI  I                                   F R G+
Sbjct: 192 GPHDL-AWREWSAPDIETI--------------------------------PGGFAREGV 218

Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411
           +  ++ L +T V +   G + +  T ALV+IDVN+G  T         L         + 
Sbjct: 219 DQMIEDLAETRVEIGE-GTMYVETTRALVAIDVNTGGDTSPAAALKANLAAARA----LP 273

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           R LR+R L G I VDF  M  K + + VE+ L+ S K D     +   +  GL E+ R+R
Sbjct: 274 RALRMRGLGGQIAVDFAPM-SKAHRKQVEQSLRASFKLDPIETSLVGWTTMGLFELQRKR 332

Query: 472 IRSSVLEST 480
            R  + +  
Sbjct: 333 ERLPLAQLL 341


>gi|284101253|ref|ZP_06386014.1| ribonuclease G [Candidatus Poribacteria sp. WGA-A3]
 gi|283830361|gb|EFC34586.1| ribonuclease G [Candidatus Poribacteria sp. WGA-A3]
          Length = 61

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++ I+ +  +ETRV VL +  V EL  +   KK   GN+Y  KV +V P +QAAFVD
Sbjct: 1  MGVEIAINMT-PQETRVAVLENKVVMELYVDRAKKKDFXGNVYKGKVVKVLPGMQAAFVD 59

Query: 61 YG 62
           G
Sbjct: 60 IG 61


>gi|256750955|ref|ZP_05491838.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750065|gb|EEU63086.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 293

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 95/292 (32%), Gaps = 7/292 (2%)

Query: 3   NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            ++++D      +++ +L + +++E   E    K I GNIY  K+  V   +QAAFVD G
Sbjct: 5   KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63

Query: 63  GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI----AQTDSEAVADDVTHGDVTIPNDH 118
             ++ FL F ++      +P S  Q L     I    ++         VT          
Sbjct: 64  IGKNAFLFFDDVLFQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYV 123

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178
            L         S   EEE       ++V  ++    G           +  I+E ++   
Sbjct: 124 VLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELI 183

Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238
            L  +I K+ +     ++             + +    E     + +  + +N+K   + 
Sbjct: 184 RLYEKIQKDFQNAPLPSLI--YKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKN 241

Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290
           +                    + + D     ++W     L  N         
Sbjct: 242 VGKENISVTYEEGDLLGIYGADFQVDKLLEKKVWLKKWGLCNNRPNRSSYCN 293


>gi|304439840|ref|ZP_07399734.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371579|gb|EFM25191.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 345

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 17/262 (6%)

Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273
                +     N   +K  KE    L+  +  GV+ RT   S T+ E+  ++E +  +++
Sbjct: 95  PGRYMVKIGGENKFSKKLSKEEVEDLKKYSFEGVLFRTEAKSATEEELLNEYEKINSIYN 154

Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
            V        AP L      L +R + D       E I++ +          + +   Y 
Sbjct: 155 MVGYEKDFEPAPRL------LYRRDVVDEVVGRYDEDIITND----------REIYKKYK 198

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
              +   D +     S I +    L + +V L S G ++I  T AL  IDVNS ++  + 
Sbjct: 199 NNYKIEYDKNFEIKYSKIYLDYLKLFEEKVELKSGGNIVIEDTTALTVIDVNSDKNW-DT 257

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
            +++ AL TN EA EEI  Q++LR+++G+I+VDFI+M+++K+   +    K+       +
Sbjct: 258 SMKNLALSTNREAIEEIMWQVKLRNISGIIIVDFINMKDQKDREKILNFAKKLNSTMNLK 317

Query: 454 VQVGAISNFGLLEMSRQRIRSS 475
           + +   +  GLLE+SRQ +   
Sbjct: 318 LSIHGFTKLGLLEISRQNMGER 339



 Score = 41.1 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          +R+EE+ FE   K  I  NIYL +V     SL+A FVD G  +
Sbjct: 16 DRLEEI-FEFGEKN-ILDNIYLGRVVEYNSSLEAYFVDIGRTK 56


>gi|84516474|ref|ZP_01003833.1| ribonuclease, Rne/Rng family [Loktanella vestfoldensis SKA53]
 gi|84509510|gb|EAQ05968.1| ribonuclease, Rne/Rng family [Loktanella vestfoldensis SKA53]
          Length = 344

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 115/302 (38%), Gaps = 40/302 (13%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           +  Q LLVQ+     G+K   VT  +    RY+++ P    G  ISR+I +   R NL  
Sbjct: 75  RQGQALLVQVTGYAEGSKAVPVTDRVLFKSRYAIVTPGKP-GLNISRQIVDEDIRDNLLA 133

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
                      G+ILR++  +    EI  D   ++ L D V   A       L   +   
Sbjct: 134 -IAHAAHEGEHGLILRSSCETADPTEIAEDITAMLDLADAVLADADGDSPEALTEGDSPH 192

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           +  A RD         +                                  F   G+  Q
Sbjct: 193 VL-AWRDWTGASEIVTV-------------------------------PGSFASHGVLEQ 220

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           + +L Q  V L   G + +  T ALV++DVN+G  T         L         + R L
Sbjct: 221 IAALGQALVPLGE-GQMYVEPTRALVAVDVNTGSDTTPAAALKANLAAARA----LPRAL 275

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR L G I VDF+ M  K + + VE+ L+ + K D     +   +  GL E+ R+R R 
Sbjct: 276 RLRGLGGQISVDFVSM-SKTHRKQVEQSLRAAFKNDPVETSLVGWTPMGLFELQRKRERL 334

Query: 475 SV 476
            +
Sbjct: 335 PL 336


>gi|145348989|ref|XP_001418923.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579153|gb|ABO97216.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 684

 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 166/501 (33%), Gaps = 89/501 (17%)

Query: 18  VVLRDNRVEEL-----DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72
           V+  D    E+     D E   +    G++YL  V    P++                  
Sbjct: 193 VLTEDGEAVEILENVRDEEEGDQAMRVGDVYLGTVVSKVPNM------------------ 234

Query: 73  EIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132
                        +  L+  +      ++ V                  +   I      
Sbjct: 235 -------------KSLLVGVATKNGKFTKTVLLRDGLSQPAAWWKGQESDKVVIEASEVS 281

Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192
             +E        + S +            K+    Y I         ++++I+++ R +K
Sbjct: 282 LPDEDEDVEMKLISSMMHSDMNDQLARAGKQAFGMYNI------GDAVILEIIRDSREHK 335

Query: 193 GAAVTTYLSLAGRYSVLM-PNTSKGETISRKITNPVDRKNLKEIARGLEVPA-------- 243
           GA  T   SL GR++V            S+K++        +     L+           
Sbjct: 336 GAIATAEPSLTGRFTVFKGTANGVSAHASKKLSVVTRDSLAQWGENTLKQTWRYGLEKIK 395

Query: 244 --------------GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289
                         G  +I+R+A AS     + R+   L R W ++   A  SV      
Sbjct: 396 DKNEAPLFTGFHGGGAHLIMRSASASAPPDVVTREVSELTRRWKSMCISAAKSVTKSRKR 455

Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK------LLMPSYARIVRQYEDPH 343
           ++  + +   RD        +                        +      +R   +  
Sbjct: 456 QQPLVPRLLWRDNTNFKGMVLRELASTNIHSIVMPNDSKPEELEEITKSVSTLRADTEEM 515

Query: 344 PIFFRSGIEVQLDSLHQT--------EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395
               R G +V++ +L +          +       ++I  TEAL +IDVN+G S      
Sbjct: 516 QTVVRVGSQVKMQNLIRRARTFSERVTIPDTQSAQLVIQSTEALTAIDVNTGSS------ 569

Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN----RSVEKKLKESLKKDR 451
             +  + N+ AA   A ++R R+++G+IV+DF++    K      R +E +  ++  +DR
Sbjct: 570 RMSVAEINVMAARTAAAEIRRRNISGIIVIDFVNAGNPKTRDQIYRQIEAEFADAATRDR 629

Query: 452 ARVQVGAISNFGLLEMSRQRI 472
            ++    IS FGL++++R  I
Sbjct: 630 GKISFMPISAFGLMQITRSHI 650


>gi|8101756|gb|AAF72647.1|AF259269_1 ribonuclease E [Serratia marcescens]
          Length = 58

 Score = 99.7 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL+AAFV
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFV 58


>gi|311031487|ref|ZP_07709577.1| cytosolic axial filament protein [Bacillus sp. m3-13]
          Length = 207

 Score = 98.9 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65
          LI      E RV +  D+++ EL  +      I+GNIY+ +V  V P +QAAFVD+G  +
Sbjct: 4  LIMDMKATEKRVAIKEDDKIVELLIDRPTTHPIEGNIYIGRVVNVLPGMQAAFVDFGQKK 63

Query: 66 HGFLP 70
           G+L 
Sbjct: 64 PGYLH 68


>gi|254479618|ref|ZP_05092925.1| S1 RNA binding domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|214034446|gb|EEB75213.1| S1 RNA binding domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 244

 Score = 97.0 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +++ID       ++  L D +++E   E ++ K I GNIY  KV  V   +QAAFVD G
Sbjct: 2  KRLIIDIDEKL-CQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIG 60

Query: 63 GNRHGFLPFLEI 74
           N++ FL   ++
Sbjct: 61 LNKNAFLFLEDV 72



 Score = 60.4 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 9/235 (3%)

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED-------VKGGSPE 158
           D     +    D  L+E  P     +            +V+  ++         K     
Sbjct: 9   DEKLCQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIGLNKNAFLF 68

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
                 +    I +V+K  Q ++VQ+ KE  G K   VTT +S+ G Y VLMP       
Sbjct: 69  LEDVVGREDKSITQVLKPGQEVMVQVTKEAIGLKSPRVTTNISIPGEYVVLMPFM-NYVN 127

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           +S +I NP DR  L EIAR L+   GMG+I+RT+  +  + EIK D E L+ +++ ++E 
Sbjct: 128 VSHRIENPADRAKLAEIARRLKPE-GMGLIMRTSSKNAKEEEIKEDIEKLLSVYEKIKEN 186

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333
                +P L+Y E ++  + +RD    D+ EI+++ E+ Y +   ++K +     
Sbjct: 187 FKLLPSPSLIYSEESIAVKYLRDFLSYDVDEIVINDEEEYEKVNQYLKKIGKDIE 241


>gi|46201808|ref|ZP_00208255.1| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum
           MS-1]
          Length = 343

 Score = 96.2 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               ++  + +       LP  G ++I QT AL +IDV+S              + N  A
Sbjct: 137 AHHEVDEAMAAALDPVAPLPGGGRLVIEQTAALTAIDVDSAGGRP--------AEVNAAA 188

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
             EIARQ+RLR+L G +VVDFI   ++K    + + L++++  D     V  +S  GL+E
Sbjct: 189 VTEIARQMRLRNLGGQVVVDFISGRDRKPLFRLVEALRQAVAADPVPTHVFGLSPLGLVE 248

Query: 467 MSRQRIRSSVLESTTK 482
           ++R+R   S+ E   +
Sbjct: 249 LTRERRGPSLAELLCR 264



 Score = 54.2 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 1  MANKM-LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59
          M+  + ++ +S   E R +VL + R  EL  +      + G+++  +VT ++  L AAFV
Sbjct: 1  MSESIDILVSSGPGEARYLVLAEGRPVELVVDRPS--LLLGSVFRGRVTALDKGLDAAFV 58

Query: 60 DYGGN-RHGFLP 70
          + G     GFLP
Sbjct: 59 NLGAGACPGFLP 70


>gi|218506992|ref|ZP_03504870.1| probable ribonuclease protein [Rhizobium etli Brasil 5]
          Length = 164

 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 124/163 (76%), Positives = 140/163 (85%)

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           ISRKITN  DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+NVR L
Sbjct: 2   ISRKITNLADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTL 61

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
            L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LMPS+A++V+ 
Sbjct: 62  TLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLMPSHAKVVQP 121

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
           Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVS
Sbjct: 122 YRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVS 164


>gi|23006419|ref|ZP_00048748.1| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum
           MS-1]
          Length = 307

 Score = 94.7 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 15  TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           T++ VL D  + E     + +  + GN+YL +V  V PS++AAF+D G  R+  L   E+
Sbjct: 93  TQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEV 152

Query: 75  HPD 77
           + D
Sbjct: 153 NWD 155


>gi|167945681|ref|ZP_02532755.1| ribonuclease E [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 60

 Score = 93.9 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 6  LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61
          LI+A+  EE RV  +   ++  LD E   ++Q K NIY  K+TRVEPSL+AAFV+Y
Sbjct: 4  LINATQPEELRVATVDGQKLFNLDIEIPGREQKKANIYKGKITRVEPSLEAAFVEY 59


>gi|229829095|ref|ZP_04455164.1| hypothetical protein GCWU000342_01180 [Shuttleworthia satelles DSM
           14600]
 gi|229792258|gb|EEP28372.1| hypothetical protein GCWU000342_01180 [Shuttleworthia satelles DSM
           14600]
          Length = 371

 Score = 92.0 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 103/319 (32%), Gaps = 37/319 (11%)

Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222
            + R+    E I     +L+QIV +   +K A  ++ +       +    + +   ISRK
Sbjct: 89  NYVRRQSKSEGIHGGDQILLQIVADPIKSKDAIGSSDIVFKSADVIAHLGSGESG-ISRK 147

Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282
           I+    R+ L++            + LRT+ AS  + E+    E L+   ++ +      
Sbjct: 148 ISGQDRRR-LRDFL-SACQGENYHLTLRTSAASLGEEELSGQVEALVEQMEDFQATIGQQ 205

Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342
               +      L    +       I+ I    E+              +       +   
Sbjct: 206 ALFTVFQPGQPLWMERLMTYPAGQIASITSDLEEVIASFAGERNNGSHTQGSKGCSWTRR 265

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402
                                                   D                L+ 
Sbjct: 266 ADSR----------------------------------LADYAPLFHAYRDEYPLYQLRN 291

Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462
                +EI+ +       G IV+DFI+M +K++   V + L    K+D   V +  ++  
Sbjct: 292 LTRLMKEISSRTVWLPCGGNIVIDFINMRDKRDLTRVMEHLSSCCKRDPQGVSLVDVTAL 351

Query: 463 GLLEMSRQRIRSSVLESTT 481
           GL+E++RQ+  +S+ +  +
Sbjct: 352 GLVEITRQKKYASLKQILS 370



 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
          D +  EL  E+  +  + G I++ ++ +  PSL AAFVD    +  FLP     PD
Sbjct: 33 DGQAIELQVENLARPSMVGQIHIGRIQKYLPSLHAAFVDIADQKKVFLPVK--SPD 86


>gi|160947331|ref|ZP_02094498.1| hypothetical protein PEPMIC_01265 [Parvimonas micra ATCC 33270]
 gi|158446465|gb|EDP23460.1| hypothetical protein PEPMIC_01265 [Parvimonas micra ATCC 33270]
          Length = 366

 Score = 91.2 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 16/297 (5%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K   ++ V+I K   G K   V+   S++  +S +     +   IS+K+          +
Sbjct: 84  KVGDVIFVEIYKINGGEKAPNVSMNFSVSSMFSAVSYKNREEILISKKLKEHNFDLEQIK 143

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
             +         V LRT      +  +  D    +     + +   N   P L+Y++ N 
Sbjct: 144 NIKS-----NFSVKLRTKSIDCDEYTLLNDIRKNVEKMQEIVDSLNNLPVPKLIYKKENF 198

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
           +   + +    +    I++ ++ Y+  KD        + +   +Y+D +   +   I V 
Sbjct: 199 LDDFLFEN---EKHCCILNDKEIYKSFKD------NKFLKNELKYDDEYSPRYDYNIGVY 249

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           L+ L++  V +     ++I + EAL  IDVNS + T E      AL  NL A EEI RQ+
Sbjct: 250 LEGLNKKTVEV-EDINIVIEKMEALTVIDVNSKKKTSEINKSKNALSVNLIAIEEIIRQI 308

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
             RD++G+I+VDFI+M+ K+    +E+K+KE    D         +  GL E++RQR
Sbjct: 309 SFRDISGIIIVDFINMKTKE-KEILEEKIKEIQIFDNKIWNFHGFTKLGLYEITRQR 364


>gi|328753017|gb|EGF66633.1| S1 RNA binding domain protein [Propionibacterium acnes HL087PA1]
          Length = 468

 Score = 89.3 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 32/69 (46%)

Query: 18  VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
            VL D  + E   +        GNIYL KV  V PS++AAF+D G  R+  L   E+   
Sbjct: 372 AVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWA 431

Query: 78  YYQIPFSDR 86
            Y     D+
Sbjct: 432 KYGKEGEDK 440


>gi|83312436|ref|YP_422700.1| ribonuclease G and E [Magnetospirillum magneticum AMB-1]
 gi|82947277|dbj|BAE52141.1| Ribonuclease G and E [Magnetospirillum magneticum AMB-1]
          Length = 344

 Score = 88.5 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
           E          ++  L ++    V L   G ++I    AL +IDV+S  +          
Sbjct: 130 EAEIVTDAHHEVDEVLQAVLDPVVPLKGGGRLVIEPAAALTAIDVDSAGARP-------- 181

Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459
            + N  A  EIARQLRLR + G +VVDF+   ++K    + + LK+++  D     V  +
Sbjct: 182 AEANGAAVTEIARQLRLRGIGGQVVVDFVSGRDRKPLFRLAEALKQAVAADSTPTHVFGV 241

Query: 460 SNFGLLEMSRQRIRSSVLESTTK 482
           S  GL+E++R+R   ++ E   +
Sbjct: 242 SPLGLVELTRERRGPALAELLCR 264



 Score = 58.1 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 4  KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG- 62
          ++LI A    E R +VL D +  EL  +      +  +++  +VT ++  L AAFVD G 
Sbjct: 6  EILISA-GPGEARYLVLADGQPLELVIDRPS--LLLDSVFRGRVTALDKGLDAAFVDLGT 62

Query: 63 GNRHGFLP 70
          G R GFLP
Sbjct: 63 GPRPGFLP 70


>gi|52695529|pdb|1SMX|A Chain A, Crystal Structure Of The S1 Domain Of Rnase E From E.
          Coli (Native)
 gi|52695530|pdb|1SMX|B Chain B, Crystal Structure Of The S1 Domain Of Rnase E From E.
          Coli (Native)
 gi|52695531|pdb|1SN8|A Chain A, Crystal Structure Of The S1 Domain Of Rnase E From E.
          Coli (Pb Derivative)
 gi|52695532|pdb|1SN8|B Chain B, Crystal Structure Of The S1 Domain Of Rnase E From E.
          Coli (Pb Derivative)
 gi|159163015|pdb|1SLJ|A Chain A, Solution Structure Of The S1 Domain Of Rnase E From E.
          Coli
          Length = 96

 Score = 88.5 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 34/44 (77%)

Query: 36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79
          +Q K NIY  K+TR+EPSL+AAFVDYG  RHGFLP  EI  +Y+
Sbjct: 6  EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYF 49


>gi|11467658|ref|NP_050710.1| ribonuclease E [Guillardia theta]
 gi|6094110|sp|O78453|RNE_GUITH RecName: Full=Ribonuclease E homolog; Short=RNase E
 gi|3602983|gb|AAC35644.1| ribonuclease E [Guillardia theta]
          Length = 429

 Score = 88.1 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 118/336 (35%), Gaps = 13/336 (3%)

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
               +   +P     +   Q+ +    + L+Q++KE   NK A +T+++ L      L  
Sbjct: 59  DSERNQGFIPFTLLIKKSNQQFVIPNSVFLIQVIKEPTINKPATLTSHIFLNSFNLNLQ- 117

Query: 212 NTSKGETISRKITNPVDRKNLKEIAR-----GLEVPAGMGVILRTAGASRTKIEIKRDFE 266
            +           N                  +     M  IL      ++KI       
Sbjct: 118 FSGIDCKYLNLYPNIKFLHICLITLLIPSGLDINFDHSMKDILYLDLIGQSKILYYSFSN 177

Query: 267 YLMRLWD-NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
              +L         +   +   +     L   +I D +       +              
Sbjct: 178 LFTKLLRIKKMPQFIFRNSNFFLPILNKLSLSSINDFFVSSYQRAVYLRHFLITHYFTIK 237

Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
           +                                 +  V      +++I +TEAL+SIDVN
Sbjct: 238 QTDYRILFYPTAYKSMQLYYLDMLFY-----RSLKPIVYTLYGIFIVICKTEALISIDVN 292

Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
           SG  +       +   TNL A++ I ++++LR+LAG+IV+DF+DM  +K+   +    + 
Sbjct: 293 SGSHSSRVSQNLSLH-TNLIASKSIIKEIKLRNLAGVIVIDFVDMIHQKDQIHLLAFFRY 351

Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481
            L  +   + +  +S+ GLLE++R+R   S+ +   
Sbjct: 352 LLNINSVMITLIQLSDIGLLELTRKRQDQSIYDVFQ 387


>gi|114797667|ref|YP_760437.1| hypothetical protein HNE_1732 [Hyphomonas neptunium ATCC 15444]
 gi|114737841|gb|ABI75966.1| hypothetical protein HNE_1732 [Hyphomonas neptunium ATCC 15444]
          Length = 356

 Score = 88.1 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 8/204 (3%)

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +    +     +VTLP  G + I +T AL + D++S     +      AL  N EAAE 
Sbjct: 146 RMAAAFEDALSPDVTLPGGGRLRIERTRALTAADIDSAGRAMKGSAAARALSLNKEAAEA 205

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV-QVGAISNFGLLEMS 468
           +ARQ+ +R L GL V+D +    K+ +  + +    +     AR  +V A S  GL+E+S
Sbjct: 206 LARQILIRGLGGLFVLDCVSPLTKETSTKLREAFLAAWDGMTARPARVLAPSALGLMELS 265

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
            +   + + E    +         + +  ++AL+ LR +E    Q     + +       
Sbjct: 266 TEWRITPLNEMLLDMAG-------LPTAETLALAGLRLLEAEARQTRMGRLKLSLPQAAF 318

Query: 529 LYLLNQKRATIVEYEARFGVSINV 552
            +L         +  +++G  + +
Sbjct: 319 AWLTASGMDAEAQLASKYGARLTI 342


>gi|8101754|gb|AAF72646.1|AF259268_1 ribonuclease E [Providencia alcalifaciens]
          Length = 53

 Score = 86.2 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 35/52 (67%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K NIY  K+TR+EPSL
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSL 53


>gi|296117423|ref|ZP_06836011.1| putative ribonuclease [Gluconacetobacter hansenii ATCC 23769]
 gi|295976025|gb|EFG82815.1| putative ribonuclease [Gluconacetobacter hansenii ATCC 23769]
          Length = 369

 Score = 85.8 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 23/216 (10%)

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408
             E+  +SL    V LP      I  T ALV+ID++ G ++ +   + TA    N  A  
Sbjct: 164 ETEMMAESLSDPFVALPGGMSATITPTPALVAIDMDGGHTSMDRRPKQTAQFAANRAALP 223

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           E+  QLRLR+L+G IVVD   +  +K  R++ + ++++L  D  R +   IS  GL E+ 
Sbjct: 224 ELLHQLRLRNLSGAIVVDAAGLAVRK-RRALAEPIEQALAADPLRPRFLGISALGLAEIV 282

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA----HNIIVHTH 524
           R RI   + E                   SV   +LRS+ + +  Y        + +   
Sbjct: 283 RPRIHPPLHELL----------------DSVTGRLLRSLRQKVRDYRGMQVPRPVTLQAG 326

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
            D+V  +     A + ++    G  + V I  +L  
Sbjct: 327 CDIVRMMRT-YPAWMEDFTRLTGCPLRVTIAPDLPP 361



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 4  KMLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           MLI  AS   E RV +    R+ +            G++Y  +V+   P+L   FVD  
Sbjct: 2  NMLIRVASGPGELRVALTDGGRLLDYALWRPDLPDGVGDLYRGRVSAHVPALGGTFVDLT 61

Query: 63 GNRHGFLPFLE 73
            + GFLP  E
Sbjct: 62 DGQAGFLPDSE 72


>gi|315651654|ref|ZP_07904665.1| ribonuclease G [Eubacterium saburreum DSM 3986]
 gi|315486108|gb|EFU76479.1| ribonuclease G [Eubacterium saburreum DSM 3986]
          Length = 343

 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 1/209 (0%)

Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332
           DN++       +P ++Y   N     I+D       +I+   ++ Y     F+       
Sbjct: 128 DNIKARKNYIKSPCMLYAGENDYIEIIKDRLKYSAFDIVTDIKEIYDGTVSFLSQNYSEA 187

Query: 333 ARIVRQYEDPHPIFFRSGIEVQL-DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
              VR Y+D      +      L +S    +V L   GY+ I  TEAL  IDVN+G++ +
Sbjct: 188 VDRVRFYDDTMITLNKLYSIDTLFESAVNKKVWLNDGGYLFIESTEALTVIDVNTGKNVQ 247

Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451
           +       L TNLEA +E ARQ+RLR+++G+I++D I+  +K     +   +K+ LK+DR
Sbjct: 248 KKDASAIKLNTNLEAIKESARQMRLRNISGIIIIDLINTTDKSQIDLIYHTMKDYLKEDR 307

Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLEST 480
                  I+   L E++R++ + S+LE  
Sbjct: 308 LNAVAIDITKLCLFEITRRKRKPSLLEVM 336



 Score = 46.1 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 29  DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88
           + E      + G+I++ +V ++  ++ AAFV+   N+       E    Y+     D + 
Sbjct: 31  EIEYIENNSLLGSIHIGRVKKISKNINAAFVEIEYNK-------ERQIVYFD--MDDFKY 81

Query: 89  LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
           L+              D V         +      A I++ S E  +      N
Sbjct: 82  LIFADEKEHPVLYEGDDIVIRISKLPIKNKLAGATADISDVSGEVLDNIKARKN 135


>gi|330994104|ref|ZP_08318033.1| Putative ribonuclease E [Gluconacetobacter sp. SXCC-1]
 gi|329758841|gb|EGG75356.1| Putative ribonuclease E [Gluconacetobacter sp. SXCC-1]
          Length = 372

 Score = 85.0 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408
            +  Q+D+L    V LP      I  T AL +ID++ G ++ +   + TA    N +A  
Sbjct: 166 DLRAQVDALEDPVVQLPGGMTASITPTPALTAIDMDGGGASMDRRPKQTAQFAANRDALP 225

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           ++  QLRLR+L+G I+VD   +  +K  R++ + ++  LK D  R +    +  GL E+ 
Sbjct: 226 DLLHQLRLRNLSGAIIVDVAGLAIRK-RRALAETVETVLKDDPLRPRFLGFTALGLAEIV 284

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR-SVEEYLLQYTAHNIIVHTHSDV 527
           R R+   + E                S     L  LR  ++ Y         ++      
Sbjct: 285 RPRVHPPLHELFH-------------SHEGRLLRALRVQMQAYRGMPPNGRPVLLACGQA 331

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
            L L+      + ++    G  +  V    L
Sbjct: 332 TLRLVQDHPGWMADFLRLTGRVLQPVADPTL 362



 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 9  ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY-GGNRHG 67
          +S   E R+ V  + R+ +            G++Y A+V+   P+L   F+   G  + G
Sbjct: 8  SSSPGEVRIAVTDNGRLCDFALWRPDMADGVGDLYRARVSAHVPALGGTFIALPGLEQAG 67

Query: 68 FLPFLE 73
          FLP  E
Sbjct: 68 FLPDSE 73


>gi|213864708|ref|ZP_03386827.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
          str. M223]
          Length = 51

 Score = 85.0 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 31/42 (73%)

Query: 31 ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72
          ES   +Q K NIY  K+TR+EPSL+AAFVDYG  RHGFLP  
Sbjct: 1  ESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 42


>gi|289671958|ref|ZP_06492848.1| ribonuclease E [Pseudomonas syringae pv. syringae FF5]
          Length = 51

 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 36/51 (70%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55
          MLI+A+  EE RV ++   R+ +LD ES  ++Q K NIY  ++TR+EPSL+
Sbjct: 1  MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLE 51


>gi|228967526|ref|ZP_04128553.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228792181|gb|EEM39756.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str.
          T04001]
          Length = 129

 Score = 84.3 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + ++ +   E RV +    ++ E  ++   +++I G+IY  ++ R    + AAFV+ G
Sbjct: 2  KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60

Query: 63 GNRHGFLPFLEIHPDY 78
            +H +L + ++   Y
Sbjct: 61 LEKHAYLSYDDVPSCY 76


>gi|258543061|ref|YP_003188494.1| hypothetical protein APA01_19920 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634139|dbj|BAI00115.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256637199|dbj|BAI03168.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256640251|dbj|BAI06213.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256643308|dbj|BAI09263.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256646363|dbj|BAI12311.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256649416|dbj|BAI15357.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256652402|dbj|BAI18336.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655460|dbj|BAI21387.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 361

 Score = 84.3 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 21/210 (10%)

Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413
              +L  + V LP      I  T AL +ID+++         +      N +A  E+  Q
Sbjct: 166 ACHALEDSTVELPGNMQATITPTPALTAIDMDAPPVAGSRPKQTAQFAANRDALPELLHQ 225

Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473
           +RLR+L+G IV+D   M  +K  ++++  ++ +L+ D  R +   IS  GL+E+ R RI 
Sbjct: 226 IRLRNLSGAIVIDPAGMAMRK-RQALQDVVQAALQADPLRPRCLGISALGLIEIVRPRIH 284

Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            S+ E       +   A       +   +ILR     +        +      V   +  
Sbjct: 285 PSLPELLNSPHGHALKALRTILAEAPTATILRGSIPLIRA------LEQDPQAVADCV-- 336

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLF 563
                        G  + +     L    F
Sbjct: 337 ----------QLRGKPLALKADPAL--PDF 354



 Score = 55.4 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 9  ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF-----VDYGG 63
          A+   E R+ V +D+ + +          + GNIY+A+V       QAAF     VD G 
Sbjct: 8  ATFPGEMRLAVTQDDTLLDYALWRPAAPDLVGNIYVARVAA-----QAAFMGGAFVDLGQ 62

Query: 64 NRHGFLP 70
             GFL 
Sbjct: 63 GLQGFLS 69


>gi|256750954|ref|ZP_05491837.1| ribonuclease [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750064|gb|EEU63085.1| ribonuclease [Thermoanaerobacter ethanolicus CCSD1]
          Length = 137

 Score = 83.9 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489
           M+ +   R + +  K  L+KDR +  V   +  GL+EM+R+R+RS V     + C  C+G
Sbjct: 1   MKNENFKRDLLEFFKRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEG 60

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            G + S   +   +  ++E  L    A  I +  +  VV   +  ++  I  Y+ +F V 
Sbjct: 61  EGMVYSTEYIYRRLRNNIERVLRHVNARKIYIKGNDKVVK--IASEKGIIKFYKEKFNVD 118

Query: 550 INVVIGIELADKLFYIE 566
           + +V+        F IE
Sbjct: 119 LELVVDNNKKYGHFEIE 135


>gi|291519382|emb|CBK74603.1| Ribonuclease E/G family [Butyrivibrio fibrisolvens 16/4]
          Length = 211

 Score = 83.9 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 5/209 (2%)

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
              +  +   D               Y    L     ++     I+  I +      +  
Sbjct: 1   MFIKKKVCQGDRFYVKITQDKKNTKPYSCSFLKIEDYKNDNTSYINYYIETYCDEAVQII 60

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
             ++        I    +D   ++        LD      V L S   ++I +TEA+  +
Sbjct: 61  TDLEEYKFPNLNIRLYNDDSLSLWNLYSFNSILDKATSKIVHLKSGANLLIEKTEAMTIV 120

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           DVNS ++  +        + N EA +E+ +QLRLR ++G+I+VD + +  ++   ++  +
Sbjct: 121 DVNSSKNYGKTDF----YKINEEAIQELIKQLRLRSISGIILVDLLKVSSEE-QEALINE 175

Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQR 471
           +K + K D +++ V   SN GLLE++R R
Sbjct: 176 IKNAAKDDISQIDVHGFSNLGLLELTRSR 204


>gi|294084881|ref|YP_003551641.1| Rne/Rng family ribonuclease [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664456|gb|ADE39557.1| ribonuclease, Rne/Rng family [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 443

 Score = 83.1 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 116/328 (35%), Gaps = 28/328 (8%)

Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234
           K   +  + I    R +K         L  RY +L+P +S G   S++ ++      ++ 
Sbjct: 93  KPGDVRPITITAAPREDKAWQAVLGARLVSRYGILLPGSS-GVFRSKRFSSSDFGDAIES 151

Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294
           + + +  P   G I+R A ++ +   ++   + L+  W    +L  + +           
Sbjct: 152 MIKAVL-PHDFGFIIRGAASALSLDAMEDAVKTLLHAWQMGAQLTSDQIDVARSP----- 205

Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354
             R I D           + +    +  D                         + ++  
Sbjct: 206 --RVIHDAGTLAEQIARYAPDAELIKLPDPAASQHL-----------------AATLDEV 246

Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           +D+  Q  V LP  G +   +T AL +ID++S          D      + A  E+ RQ+
Sbjct: 247 IDNALQARVPLPQGGCLWCQRTHALWAIDLDSAGYNNPKA-GDMLQSLAMVAIPEMTRQI 305

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
           RLR + G + +D   +  K   ++   +  ++   D    ++   +  GLLEM       
Sbjct: 306 RLRAMGGALCIDLPRLGSKAG-KAFLTRFADACADDSRAPEILGFTRGGLLEMRVPYGEQ 364

Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALS 502
           S+ +           AG   +   +A S
Sbjct: 365 SLADIMADRIAQTALAGLRLASHRIASS 392


>gi|331002177|ref|ZP_08325696.1| hypothetical protein HMPREF0491_00558 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411271|gb|EGG90687.1| hypothetical protein HMPREF0491_00558 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 338

 Score = 82.7 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 1/212 (0%)

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329
            + D +        AP ++Y         I+D       +I+    + Y    +F     
Sbjct: 125 EISDKIMAKKNYIKAPSMLYAGSQDYIDIIKDRLKYCKFDIVTDIAEVYEGIVEFFSENN 184

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQL-DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
               + VR YED      +      L   L   +  L   GY+ I   EAL  +DVN+G+
Sbjct: 185 KKLLKRVRLYEDSMISLNKLYSIDTLFGELLSKKAWLKDGGYLYIESMEALTVVDVNTGK 244

Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448
           + ++       L TNLEA +E ARQLRLR+++G+I++D I+  +K     +   +KE LK
Sbjct: 245 NVQKKDANIVKLNTNLEAIKETARQLRLRNISGIIIIDLINTTDKSEIDLIYHTMKEYLK 304

Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           +DR       I+   L E++R++ + S+ E  
Sbjct: 305 EDRLNTVAIDITKLCLFEITRRKRKPSLEEIM 336



 Score = 44.2 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 11/122 (9%)

Query: 21  RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80
            +N+  E   E   +  + G+I++ KV ++  ++ AAFV+   N        E    Y+ 
Sbjct: 25  ENNKPNE--IEYIEENSLLGSIHIGKVKKIATNINAAFVEIEFN-------SERQMVYFD 75

Query: 81  IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
              ++ + L+       +      D +         +      A ++    E  ++ +  
Sbjct: 76  --MAELKYLIFADEKEHSKLYEGDDILIKISKLPIKNKLPGSTANLSGIESEISDKIMAK 133

Query: 141 AN 142
            N
Sbjct: 134 KN 135


>gi|329115667|ref|ZP_08244389.1| Ribonuclease [Acetobacter pomorum DM001]
 gi|326695095|gb|EGE46814.1| Ribonuclease [Acetobacter pomorum DM001]
          Length = 361

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 21/215 (9%)

Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408
             I     +L  + + LP      I  T AL++ID+++         +      N +A  
Sbjct: 161 PEIMAACHALEDSSIDLPGNMQATITPTPALIAIDMDAPPVAGSRPKQTAQFAANRDALP 220

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           E+  Q+RLR+L+G IV+D   M  +K  ++++  ++E+L+ D  R +   +S  GL+E+ 
Sbjct: 221 ELLHQIRLRNLSGAIVIDPAGMAMRK-RQALQDVVQEALRADPLRPRCLGVSALGLIEIV 279

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R RI  S+ E          G              L+++   L Q     I+  +   + 
Sbjct: 280 RPRIHPSLPELLNSP----HG------------HALKALRTILAQAPTATILRGSIPFIQ 323

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
              L Q    + +     G  + +     L    F
Sbjct: 324 A--LEQDPQAVADCVQLRGKHLALKADPAL--PDF 354



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 9  ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA-----AFVDYGG 63
          A+   E R+ V +D+ + +          + GNIY+A+V       QA     AFVD G 
Sbjct: 8  ATFPGEMRLAVTKDDTLLDYALWRPATPDLVGNIYVARVAA-----QAAFMGGAFVDLGH 62

Query: 64 NRHGFLP 70
             GFL 
Sbjct: 63 GLQGFLS 69


>gi|16126580|ref|NP_421144.1| hypothetical protein CC_2341 [Caulobacter crescentus CB15]
 gi|221235362|ref|YP_002517799.1| ribonuclease, CafA family [Caulobacter crescentus NA1000]
 gi|13423868|gb|AAK24312.1| hypothetical protein CC_2341 [Caulobacter crescentus CB15]
 gi|220964535|gb|ACL95891.1| ribonuclease, CafA family [Caulobacter crescentus NA1000]
          Length = 353

 Score = 80.8 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 13/209 (6%)

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
               T  +LP  G + +  T AL +IDV+ G +      +  A   N+ A    AR LRL
Sbjct: 155 DALATVFSLPGGGDIAVEPTRALTAIDVDLG-ARDGADSKRAARLANMAAINVAARVLRL 213

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           + LAG+I+ D +      + +++    + +   D   V +G IS FG LEM   R    +
Sbjct: 214 KGLAGIIIFDLV--GRGHDAQALTTAARNAFAPDNPGVGIGPISKFGTLEMIVPRRAPPI 271

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
           L+         +          VA  + R++E          +  H    V      +  
Sbjct: 272 LDRLLTRDGDAE-------PRYVARRLARALEREGRADPGGRLTAHCAPAVAEAFQAELD 324

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYI 565
             + E   R G    V        + F +
Sbjct: 325 QGVAE---RLGRRFVVEAAPAWPVERFEV 350


>gi|295690490|ref|YP_003594183.1| RNA-binding protein AU-1/Ribonuclease E/G [Caulobacter segnis ATCC
           21756]
 gi|295432393|gb|ADG11565.1| RNA-binding protein AU-1/Ribonuclease E/G [Caulobacter segnis ATCC
           21756]
          Length = 348

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 18/218 (8%)

Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406
               +E        T   LP  G + +  T AL ++DV+ G +      +  A Q N+ A
Sbjct: 140 ALQAVEEAEADALATVFALPGGGDIAVEPTRALTAVDVDLG-AREASDSKRAARQANMAA 198

Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466
               AR LRL+ L G+IV D +      + +++    + +   D   V VGAIS FG LE
Sbjct: 199 LSVAARVLRLKGLGGIIVFDLV--GRGHDGQALTTAARNAFSADNPGVGVGAISKFGTLE 256

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           M   R    +L+            G   +    A  + R++E          +       
Sbjct: 257 MIVPRRAPPILDRLLTP------TGA-PNPRHQARRLARALEREGRAQGGARLTARCSPA 309

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVV-----IGIELA 559
           V    + +  A + +   R G    +          + 
Sbjct: 310 VAEAFVAELDAGVAD---RLGRRFAIESMTNWPDDRME 344


>gi|319651717|ref|ZP_08005843.1| hypothetical protein HMPREF1013_02455 [Bacillus sp. 2_A_57_CT2]
 gi|317396536|gb|EFV77248.1| hypothetical protein HMPREF1013_02455 [Bacillus sp. 2_A_57_CT2]
          Length = 232

 Score = 78.9 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 5  MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64
          ML+      E R   L+D RVE+L  +   ++   G+IYL  V +V P L AAFV+ G +
Sbjct: 3  MLVVNYASRERRFAHLKDKRVEKLFIDQPKQRSSVGDIYLGTVAKVMPGLNAAFVEIGED 62

Query: 65 RHGFLP 70
          + GF+ 
Sbjct: 63 QSGFIH 68


>gi|209544281|ref|YP_002276510.1| putative ribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531958|gb|ACI51895.1| putative ribonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 368

 Score = 78.9 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408
             E    +L    V LP      I  T ALV+ID++ G ++ +   + TA    N +A  
Sbjct: 161 ETEAACAALADPVVALPGGMRASITPTPALVAIDMDGGGASTDRRAKQTAQFAANRDALP 220

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            +  Q+RLR+L+G IV+D   +  +K  +++ + ++ +L +D  R +    +  GL E+ 
Sbjct: 221 ALLHQIRLRNLSGAIVLDVAGLAIRK-RQALRETIEAALAQDPLRPRFLGFTALGLAEIL 279

Query: 469 RQRIRSSVLESTT 481
           R RIR  + E  +
Sbjct: 280 RTRIRPPLHEMLS 292



 Score = 41.5 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M  ++L  AS   E R+ V  D  + +       +    G+++  +     P+L   F+D
Sbjct: 1  MTTRILA-ASAPGEIRIAVTDDTGLRDYALWRPGRPDGVGDLHRGRAGARMPALGGTFID 59

Query: 61 YGGNRHGFLP 70
                GFLP
Sbjct: 60 LADGTAGFLP 69


>gi|162147232|ref|YP_001601693.1| ribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785809|emb|CAP55380.1| putative ribonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 363

 Score = 78.9 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408
             E    +L    V LP      I  T ALV+ID++ G ++ +   + TA    N +A  
Sbjct: 156 ETEAACAALADPVVALPGGMRASITPTPALVAIDMDGGGASTDRRAKQTAQFAANRDALP 215

Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
            +  Q+RLR+L+G IV+D   +  +K  +++ + ++ +L +D  R +    +  GL E+ 
Sbjct: 216 ALLHQIRLRNLSGAIVLDVAGLAIRK-RQALRETIEAALAQDPLRPRFLGFTALGLAEIL 274

Query: 469 RQRIRSSVLESTT 481
           R RIR  + E  +
Sbjct: 275 RTRIRPPLHEMLS 287


>gi|148261673|ref|YP_001235800.1| ribonuclease G and E-like protein [Acidiphilium cryptum JF-5]
 gi|326405166|ref|YP_004285248.1| RNA-binding protein [Acidiphilium multivorum AIU301]
 gi|146403354|gb|ABQ31881.1| Ribonuclease G and E-like protein [Acidiphilium cryptum JF-5]
 gi|325052028|dbj|BAJ82366.1| RNA-binding protein [Acidiphilium multivorum AIU301]
          Length = 290

 Score = 78.1 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAEEIA 411
            ++ +L +    LP      +  T AL +ID+++G +T E   +  A  + N     E+A
Sbjct: 162 EEIAALAEPVFPLPQGARGTVCPTPALTAIDIDAGAATAERGDKHGAQLRLNRAIIPELA 221

Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471
           RQ+RLR+LAG I+VDF  M+       +   L  +L +D  R ++   S  G  E+SR R
Sbjct: 222 RQIRLRNLAGAILVDFAGMKPAA-RPKLAPDLAAALARDPLRPRLLGFSALGFAEISRPR 280

Query: 472 IRSSVLE 478
           IR  + E
Sbjct: 281 IRPPLHE 287


>gi|322647016|gb|EFY43517.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
          Length = 93

 Score = 77.3 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%)

Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535
           +       C  C G G +++  +V   I+R +      Y +   +V+    V   L  ++
Sbjct: 1   MEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEE 60

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYI 565
              + E E   G  + V +      + F +
Sbjct: 61  SHALAEVEIFVGKQVKVQVEPLYNQEQFDV 90


>gi|213859803|ref|ZP_03385507.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 78

 Score = 77.3 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 45/78 (57%)

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           +LEMSRQR+  S+ ES+  VC  C G G +R   S++LSILR +EE  L+     +    
Sbjct: 1   MLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV 60

Query: 524 HSDVVLYLLNQKRATIVE 541
              +  YLLN+KR+ +  
Sbjct: 61  PVPIASYLLNEKRSAVNA 78


>gi|205374317|ref|ZP_03227115.1| ribonuclease G [Bacillus coahuilensis m4-4]
          Length = 84

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
           +++++A   +  R  +  D  ++E        +   G++Y A V +V   LQAAFV++G
Sbjct: 2  KELIVNAKGRD-KRWALREDGMLQEFHTRQGTHQSKVGSVYYAVVEKVVSGLQAAFVNFG 60

Query: 63 GNRHGFLPFLEIHP 76
           ++  FL   ++  
Sbjct: 61 EDKRAFLSKEDVAS 74


>gi|315498217|ref|YP_004087021.1| RNA-binding protein au-1/ribonuclease e/g [Asticcacaulis
           excentricus CB 48]
 gi|315416229|gb|ADU12870.1| RNA-binding protein AU-1/Ribonuclease E/G [Asticcacaulis
           excentricus CB 48]
          Length = 336

 Score = 75.4 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 22/229 (9%)

Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            + +K           ++E           E Q     Q    LP  GY+ I  T AL++
Sbjct: 116 MERLKQQARRLIDPQVRFEPAEDPDALDIAEAQ---ATQPSFDLPGGGYLSIEATRALIA 172

Query: 382 IDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
            D++ GR+     H     A + N  A EE+ R+LRL +LAGL+VVD I    K N   +
Sbjct: 173 CDIDMGRAGEGMIHTPRQAAKRLNEVAVEELVRRLRLSNLAGLVVVDLI--GNKHNGEKL 230

Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
              ++ +   +   +  G I+ FG LE SR       +E                +    
Sbjct: 231 TGLVQSAFAAEGRAIACGPITRFGTLEFSRPWGAQPHME---------------ETPLRA 275

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           A  +L              + +     V   +    + ++     R  V
Sbjct: 276 ARRLLWRAVAEARSDVGGRLRLRAPGPVADQVRQCLKDSLDPLTPRLSV 324


>gi|329851099|ref|ZP_08265856.1| ribonuclease E/G family protein [Asticcacaulis biprosthecum C19]
 gi|328839945|gb|EGF89517.1| ribonuclease E/G family protein [Asticcacaulis biprosthecum C19]
          Length = 338

 Score = 73.5 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR--EHCIEDTAL 400
              F R  I+   ++  Q    LP  GY+ I  T ALV+ DV++  +T            
Sbjct: 136 MEAFDREAIDTAEEAARQPSGDLPGGGYLHIEPTRALVACDVDTSGATETGMASSHTAGR 195

Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460
             N  A  +I R+LRL  LAGLIVVD I      +   +   L +    +  R+ V  I 
Sbjct: 196 ACNEAAVRDIGRRLRLSALAGLIVVDLIGKRHDGDR--LRTLLLQGFGAEAPRLAVAPIG 253

Query: 461 NFGLLEMSRQR 471
            FG LE +R  
Sbjct: 254 KFGTLEFTRPW 264


>gi|197105656|ref|YP_002131033.1| hypothetical protein PHZ_c2193 [Phenylobacterium zucineum HLK1]
 gi|196479076|gb|ACG78604.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 371

 Score = 72.7 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 75/211 (35%), Gaps = 14/211 (6%)

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
              +    LP  G + I  T AL +IDV+ G        +    Q NL A  E AR LRL
Sbjct: 174 QALEVLHPLPGGGALAIEPTRALTAIDVDLGERK-GADAKRVTRQANLAALAEAARLLRL 232

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           + L G++V+D +      N  ++    + +   D   V +G +  FG +E+S  R +   
Sbjct: 233 KGLGGIVVIDLVGRGHDGN--ALMTAARAAFGPDNPGVAIGPVGRFGTMEISLPRRQRPT 290

Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
            E   +            S  ++A  ++R ++                 DV        +
Sbjct: 291 AELLCRDDGA-------LSDRTLAQRLIRELQREGEADRGGRFTGLCSPDVAA----GAQ 339

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEK 567
             +V      G   ++          F + +
Sbjct: 340 PLLVRLAEAMGARFSIAAEAGRPRDRFEVRR 370


>gi|218754177|ref|ZP_03532973.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503]
          Length = 78

 Score = 72.7 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56
          T++ VL D  V E    S     + GNIYL  V  V PS++A
Sbjct: 36 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEA 77


>gi|58039468|ref|YP_191432.1| hypothetical protein GOX1004 [Gluconobacter oxydans 621H]
 gi|58001882|gb|AAW60776.1| Hypothetical protein GOX1004 [Gluconobacter oxydans 621H]
          Length = 347

 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 28/207 (13%)

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           +E   DSL   E  L      I   T ALV+ID++S  +             N+ A  E+
Sbjct: 160 LEADFDSLGSPEADLGLLTASIF-PTPALVAIDLDSTGAPDFKG--------NIAAFPEL 210

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           ARQ+RLR+L+G I+VD   ++ +K   ++   L+E+L  D  +  V   +  GLLE++R 
Sbjct: 211 ARQIRLRNLSGTILVDPAGVKTRK-RPALVPFLREALAGDPLKPDVLGATPSGLLELTRP 269

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R R  + E  +                  ALSILR++           +           
Sbjct: 270 RRRPPLHELLSSP-------------HGQALSILRTILRENR--PGQTLTASIGLVRA-- 312

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIE 557
            L      + ++ +R    +++V+   
Sbjct: 313 -LENDPDALADFISRRARPLDLVLDPN 338


>gi|46206125|ref|ZP_00047679.2| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum
           MS-1]
          Length = 207

 Score = 71.5 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 85/115 (73%), Positives = 98/115 (85%)

Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219
            P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G  I
Sbjct: 92  RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 151

Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274
           SRKIT+  DRK LKE+   L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++
Sbjct: 152 SRKITSAADRKRLKEVVADLDVPEGMGIILRTAGASRTKPEIKRDFEYLMRLWES 206


>gi|103487398|ref|YP_616959.1| ribonuclease [Sphingopyxis alaskensis RB2256]
 gi|98977475|gb|ABF53626.1| ribonuclease [Sphingopyxis alaskensis RB2256]
          Length = 330

 Score = 71.5 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 27/206 (13%)

Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
              ++    +T     + G + ++ T A+V ID++             AL      A E 
Sbjct: 143 GWSEMIDCVRTGHWPFAGGALWVDATPAMVLIDIDGEG---------DALALAKTGAVEA 193

Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470
           A  +R   + G I +DF  +  +   R+++  +  +L     R  V   + FG +++ R+
Sbjct: 194 AAVIRCCGIGGSIGIDFPSLPGRAERRAIDAAIDAALPPPFERTAV---NGFGFMQIIRR 250

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R R S++E                   + A  +LR  E  +    A  + +     V+ +
Sbjct: 251 RDRPSLIEQVRLD-----------PVRTDAALLLRRAERAV---GAGVLTLTARGAVIDH 296

Query: 531 LLNQKRATIVEYEARFGVSINVVIGI 556
           +   +   I + E R G  I +V   
Sbjct: 297 IA-ARPGWIAQLEQRCGRPIRLVADP 321


>gi|167945682|ref|ZP_02532756.1| Ribonuclease E and G [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 125

 Score = 70.8 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 59/126 (46%), Positives = 83/126 (65%), Gaps = 1/126 (0%)

Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243
           + KEERGNKGAA+TT++SLAGRY VLMPN  +   +SR+I      + L+E    LE+P 
Sbjct: 1   MEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRAE-LREAMSTLEIPD 59

Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303
           GMG+I+RTAG  +   E++ D +YL++LW  + + A     P L+Y+E N+I R+IRD  
Sbjct: 60  GMGLIVRTAGIGKNAEELQWDLDYLIQLWQAIEKSATAKPGPFLIYQESNIIIRSIRDYL 119

Query: 304 CKDISE 309
             DI E
Sbjct: 120 RADIGE 125


>gi|269467843|gb|EEZ79589.1| hypothetical protein Sup05_0911 [uncultured SUP05 cluster
           bacterium]
          Length = 180

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 64/180 (35%)

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571
                  + + +  DV+ YLLN+KR  I   E +  + I ++    +    F I K    
Sbjct: 1   ASKQTERLTIQSSVDVITYLLNEKRQDIARLENKHEIKITLLPNPYMQFPNFIINKQKGD 60

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +   +  ++  S  Q    +  +    ++ A+     S  +   + ++  +  + +   +
Sbjct: 61  KKSQHRSYQGISKPQYNIAENGLTSKAEEPAINVNRPSSRIPKKEMSLFEKIKSALFGTK 120

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           + +  ++R   ++ +     + +  +N   +      +    ++    +      T   D
Sbjct: 121 KAKPNKQRTNQNNRNKNRNKNRNRNRNRSQNKGQNKNQKPQQSSTAKQKPKTSSSTNKKD 180


>gi|11467784|ref|NP_050835.1| ribonuclease E [Nephroselmis olivacea]
 gi|59798598|sp|Q9TL10|RNE_NEPOL RecName: Full=Ribonuclease E homolog; Short=RNase E
 gi|5880713|gb|AAD54806.1|AF137379_29 ribonuclease E [Nephroselmis olivacea]
          Length = 375

 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 107/300 (35%), Gaps = 15/300 (5%)

Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236
              +LVQIV++    K   V+ +++L     V+ P  S  + I            L    
Sbjct: 87  GDFVLVQIVQDGNHAKVHLVSGHIALTTSRLVVWPGLSSKDWIFSHQIGQKINNYL--HV 144

Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296
           R L        IL T      K   +   E+    +          ++      E   + 
Sbjct: 145 RKLVSYMRRDQILCTGPQRWMKE--QYALEHQWENFVLEFIEQPTGISYLTSMTEK-FVS 201

Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
               + +   +S  I+       + ++ M   M ++     ++               L 
Sbjct: 202 PVCAEWFQHPLSVWIIGCNL---QIRESMTKWMITHVPHKSRH-IEITTLDAWKNWYNLH 257

Query: 357 SL--HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
                Q ++ L S G +II  TE   S D+NSG               N EA   IA+Q+
Sbjct: 258 RAAIVQPQIPLRSGGTMIIEFTEIGWSFDINSGIGLEIGSKTCA----NEEAIYAIAQQI 313

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
            LR + G I++DFI   + +  R    +    L++D   +++ +IS  GL+ + R R   
Sbjct: 314 LLRSMHGFILIDFIGDIDLEKLRVNLIQFTSLLEQDSYHIRIISISADGLVCVIRHRRSK 373


>gi|56551908|ref|YP_162747.1| hypothetical protein ZMO1012 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543482|gb|AAV89636.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 337

 Score = 65.4 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 27/189 (14%)

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            G + +  T AL   D++    + +  ++ T         E  A+ L L D+ G I +D 
Sbjct: 160 GGRLRMALTPALTLFDIDGHLGSLDLALKGT---------EATAKALILFDIGGSIGIDI 210

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
             +  K + + V +   + L     R  V   + FG L++ RQ+ R S+ E         
Sbjct: 211 PGLSGKSDRQKVAECFDQHLPPPFERTGV---NGFGFLQIIRQKKRPSLPEQIAAY---- 263

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
                       A  +LR          A   I+     V+  L N+    +        
Sbjct: 264 -------PIEHEARQLLRQ---ACRAKGAGKRILTASHFVIDCL-NRHPDWLEALARESA 312

Query: 548 VSINVVIGI 556
             I +    
Sbjct: 313 AEIILKADP 321


>gi|260752536|ref|YP_003225429.1| hypothetical protein Za10_0293 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551899|gb|ACV74845.1| hypothetical protein Za10_0293 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 337

 Score = 65.4 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 27/189 (14%)

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            G + +  T AL   D++    + +  ++ T         E  A+ L L D+ G I +D 
Sbjct: 160 GGRLRMALTPALTLFDIDGHLGSLDLALKGT---------EATAKALTLFDIGGSIGIDI 210

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
             +  K + + V + L + L     R  V   + FG L++ RQ+ R S+ E         
Sbjct: 211 PGLSGKSDRQKVAECLDQHLPPPFERTGV---NGFGFLQIIRQKKRPSLPEQIAAY---- 263

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
                       A  +LR          A   I+     V+  L N+    +        
Sbjct: 264 -------PIEHEARQLLRQ---ACRAKGAGKRILTASHFVIDCL-NRHPDWLEALARESA 312

Query: 548 VSINVVIGI 556
             I +    
Sbjct: 313 AEIILKADP 321


>gi|85707922|ref|ZP_01038988.1| ribonuclease [Erythrobacter sp. NAP1]
 gi|85689456|gb|EAQ29459.1| ribonuclease [Erythrobacter sp. NAP1]
          Length = 329

 Score = 65.0 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 31/240 (12%)

Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
           D  K    +  + +    D    F     E    S     +     G V+ + T A+  I
Sbjct: 111 DPEKTAGETRTKDLFVLGDSVSQFEMGDWEEVWHSASSGTIAFA-GGEVLCSVTPAMTVI 169

Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
           D++          +       L A   IA+ LR  D+ G I +DF  +E K + R+V++ 
Sbjct: 170 DIDG---------DLPPRDLALAAVPAIAKALRWFDIGGNIGIDFPTLEAKADRRAVDEA 220

Query: 443 LKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
           L+++L      R     ++ FG +++  +    S+L       T       IR       
Sbjct: 221 LEDALADWSHERTS---MNGFGFVQLVARLEGPSLLHRFATSRTALCARYAIRVAE---- 273

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
                         A   ++  H  +   +   K   I + E R G  + +     LA +
Sbjct: 274 ----------RASGAGVTLLRVHPALAAKI---KPDWITDVERRTGRPLRIETQPGLALE 320


>gi|58700240|ref|ZP_00374721.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533241|gb|EAL57759.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 179

 Score = 64.6 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278
           +SR+I +   RK LKEI   + +P   G+I+RT G+ + K EI++D+ YL  LW ++++ 
Sbjct: 1   MSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKN 60

Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338
           A +   P L+Y E ++I R++RD    D  E+IVSG++ +   + +    +       R 
Sbjct: 61  AFSVNVPSLIYNEADVIMRSVRDFCS-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRL 119

Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371
           Y    PIF   GIE Q+  L+   V LPS G +
Sbjct: 120 YRGYAPIFTYYGIEDQISELYSNRVELPSGGSL 152


>gi|257066801|ref|YP_003153057.1| ribonuclease G and E-like protein [Anaerococcus prevotii DSM 20548]
 gi|256798681|gb|ACV29336.1| ribonuclease G and E-like protein [Anaerococcus prevotii DSM 20548]
          Length = 307

 Score = 61.5 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416
            L Q +        +II++ E +  IDVNS      +  +      N+E  + I   L+ 
Sbjct: 180 ELIQEKRPTYGDLSLIIDELETMTVIDVNSNSKKSTNNKDKFLENINMELIDPILYNLKA 239

Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475
           R++ G++++DF+     +N   +E+ +++  K      ++   S  GL EM+ +R  + 
Sbjct: 240 RNIGGMVLIDFLR---NENKEKIEESMRKKSKDYDLECEIFGFSPMGLFEMTIKRRGAR 295


>gi|283798980|ref|ZP_06348133.1| ribonuclease G [Clostridium sp. M62/1]
 gi|291073258|gb|EFE10622.1| ribonuclease G [Clostridium sp. M62/1]
          Length = 80

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%)

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           G G +++  +V   I+R +      Y +   +V+    V   L  ++   + E E   G 
Sbjct: 1   GRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGK 60

Query: 549 SINVVIGIELADKLFYI 565
            + V +      + F +
Sbjct: 61  QVKVQVEPLYNQEQFDV 77


>gi|149185949|ref|ZP_01864264.1| ribonuclease [Erythrobacter sp. SD-21]
 gi|148830510|gb|EDL48946.1| ribonuclease [Erythrobacter sp. SD-21]
          Length = 315

 Score = 61.1 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 30/197 (15%)

Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425
              G ++   T A+  +D++                  L A   +A  LR  DL G I +
Sbjct: 138 FDGGSLLFAVTPAMTLVDIDGA---------LDPRTLALAAVGPLAEALRQFDLGGSIGI 188

Query: 426 DFIDMEEKKNNRSVEKKLKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
           DF  +E K + ++V+  L+E+L      R    A++ FG +++  +    S+L       
Sbjct: 189 DFPTLEAKADRKAVDTMLEEALTGWPHERT---AMNGFGFVQIVARLEGPSLLHRFATSR 245

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544
           T       IR    V                A   +++ H  +   L   K   I E E 
Sbjct: 246 TGMAARIAIRRAEMV--------------EGAGVTLLNVHPALKAKL---KPDWITEVER 288

Query: 545 RFGVSINVVIGIELADK 561
           R G  + +     LA +
Sbjct: 289 RTGRPLRIETDPGLAIE 305


>gi|323706725|ref|ZP_08118214.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum
          LX-11]
 gi|323533927|gb|EGB23789.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum
          LX-11]
          Length = 48

 Score = 60.8 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVT 48
           ++L D S     +V  L D  + E   E   K+ I GNIY  KV 
Sbjct: 2  KRILFDISDKF-YQVAYLEDGLLIEYHVEHSDKRSIVGNIYKGKVK 46


>gi|153941155|ref|YP_001389869.1| cell wall-associated hydrolase [Clostridium botulinum F str.
           Langeland]
 gi|152937051|gb|ABS42549.1| cell wall-associated hydrolase [Clostridium botulinum F str.
           Langeland]
          Length = 798

 Score = 60.4 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/199 (10%), Positives = 51/199 (25%), Gaps = 5/199 (2%)

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
             I    ++Y ++     +   +   V     N+K+   ++ E       +         
Sbjct: 495 NQIATQDKKYGVKENNVTVDNKSAEAVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKVT 554

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           +    ++    +       +    +   +  K  E   + EA     K+    +      
Sbjct: 555 EE--TQRKEAEETQRKAAEEAQRKAAEETQRKAAEEAQRKEAEKTQRKAA---EETQRKE 609

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
           +EES     +  +R+          +     +    Q    +                 E
Sbjct: 610 AEESQRKAAEEAQRKEAEEAQRKAAEEAQRKEAEEAQRKAAEEAQRKEAEEAQRKEAEAE 669

Query: 681 NGAHGFTENYDVSIPPVST 699
                  E  +VS    +T
Sbjct: 670 ASKSQQKEQSNVSEKAPAT 688


>gi|317496736|ref|ZP_07955066.1| hypothetical protein HMPREF0996_00045 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895748|gb|EFV17900.1| hypothetical protein HMPREF0996_00045 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 132

 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 19  VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78
           +L+D    E    SE  K   GNIY+  V  V  ++  AFV++  +  GFL     H  Y
Sbjct: 19  LLKDGHPVEFQCVSEKNKVDIGNIYIGVVKNVVKNINGAFVEFDQDEIGFLSMR--HRQY 76

Query: 79  YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138
                +  + L++    A  +   +  D            S +    I+N   + E+   
Sbjct: 77  ----KAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKLSVGISNKIHQKEKNRN 132


>gi|291231503|ref|XP_002735704.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 3906

 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/699 (10%), Positives = 195/699 (27%), Gaps = 107/699 (15%)

Query: 86   RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEE-----ESIIS 140
            ++ LL E   A  +    A +       +  +      A      Q+ +E         +
Sbjct: 2783 QEKLLAELQKAYAEEMEKAANNEARKSEMDAEMEARMRALNLANKQKVDEALDSLNKKNA 2842

Query: 141  ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200
             N D+  N++D      +    K      I+   +  +  L     +E  ++       L
Sbjct: 2843 QNKDMRKNMKDRMKARKDRKRDKKSLPSNIKPGTEEGKEYLETANTQEDADREREEQALL 2902

Query: 201  SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260
             +A          +    ++  + +    +  ++            +  +     +    
Sbjct: 2903 KIADEVMAEERQRAYWAALNGLMEDSNKTQEERDKIMADYDKNSERIQNKFDAQKQ---- 2958

Query: 261  IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320
             K+  E + RL    R     +    +  E  N  K+  + +  +   E+     +   +
Sbjct: 2959 -KQQDELMARLAARKRMREELTTDESVHKELNNASKQVEKQMQKQVELEVQQKEVENKAQ 3017

Query: 321  AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
                 +    +        ++ + I  +     + + L + +  L    Y  + +     
Sbjct: 3018 KDLDDEESQETEKINREIVDEKNRIIAKKDAAFEKEMLLKRKQ-LSDDEYQKLLEKHR-- 3074

Query: 381  SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
                                       +E+ R               +D E+++  +S++
Sbjct: 3075 ---------------------------QEMERLAA-----------AMDQEKERQKKSLQ 3096

Query: 441  KKLKESLKKD----RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
            ++  E  KK     R + Q       G   M R++     +    +     +  G   S 
Sbjct: 3097 ERFAERKKKMAEHLRKKHQAEMEKELGQQHMEREKKIEKEMRGKERPAIDSELQGEDVSA 3156

Query: 497  SSVALSILRSVEEYLLQYTAHNIIVHTHSDVV--------------LYLLNQKRATIVEY 542
             +V   +LR             +    ++ +                 LL  +R  +++ 
Sbjct: 3157 ENVIYRVLRQRHIKETVNQNEKMKHERNAAIADARNKMEEARQSERDELLEAQRQELMDL 3216

Query: 543  ---------EARFGVSINVVIGIELADKLFYI---EKGSPVQALV---------NTGHKV 581
                     E       +++   +     F     ++    +  V         +    +
Sbjct: 3217 IANAGDMTEEELADKKDDLLRQHKTQLMEFDKVTGQRVEQAEKDVLPGLDVKQAHEKLAL 3276

Query: 582  GSDSQAPSYDKNIECVWQDEALL-----------------PIPKSESLEDIQDNIVSEES 624
                     D   +    +E ++                    K ++L++  D I +E+ 
Sbjct: 3277 KEKQLQELADAMRDISHGEEDMVRRYSEEAAKAAEDAKKFRETKMKTLKEQMDQIKAEKK 3336

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 +RR+ + + +   D  +   + D   I+    +   +  +  +     L  +   
Sbjct: 3337 KQDDERRRKMQEQLKNIEDEFEKQRLRDEQRIKERDLEREQLRQQQREEREKRLRSDLDK 3396

Query: 685  GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               E+    I       M++ +++     +K     R+K
Sbjct: 3397 ETDESKKKKILADHEAAMKAWDANQKKEQEKQSRATRKK 3435



 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 71/647 (10%), Positives = 169/647 (26%), Gaps = 49/647 (7%)

Query: 86   RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
            RQ                  D    D+T P+D   ++   +    QE     +  A  + 
Sbjct: 2738 RQKKDLHRKQVSEAKSEGLKDEDVPDMTDPSDAQQDKEFRLLALQQEKLLAELQKAYAEE 2797

Query: 146  VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR-QILLVQIVKEERGNKGAAVTTYLSLAG 204
            +    + +    E   +   R   +    K +    L  + K+   NK         +  
Sbjct: 2798 MEKAANNEARKSEMDAEMEARMRALNLANKQKVDEALDSLNKKNAQNKDMRKNMKDRMKA 2857

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
            R         K    S       + K   E A   E               +  ++I  +
Sbjct: 2858 RKDR---KRDKKSLPSNIKPGTEEGKEYLETANTQEDAD-------REREEQALLKIADE 2907

Query: 265  FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324
                 R       L       +   EE +   + + D              +  ++  + 
Sbjct: 2908 VMAEERQRAYWAALNGLMEDSNKTQEERD---KIMADYDKNSERIQNKFDAQKQKQQDEL 2964

Query: 325  MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
            M  L            D       +    Q++   Q +V L         + +A   +D 
Sbjct: 2965 MARLAARKRMREELTTDESVHKELNNASKQVEKQMQKQVEL--EVQQKEVENKAQKDLDD 3022

Query: 385  NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
               + T +   E    +  + A ++ A +  +      +  D      +K+ + +E+   
Sbjct: 3023 EESQETEKINREIVDEKNRIIAKKDAAFEKEMLLKRKQLSDDEYQKLLEKHRQEMERL-- 3080

Query: 445  ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504
             +   D+ +            E  ++ ++    E   K+  +       +   +     L
Sbjct: 3081 -AAAMDQEK------------ERQKKSLQERFAERKKKMAEH-----LRKKHQAEMEKEL 3122

Query: 505  RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK---RATIVEYEARFGVSINVVIGIELADK 561
                    +     +       +   L  +       I     +  +   V    ++   
Sbjct: 3123 GQQHMEREKKIEKEMRGKERPAIDSELQGEDVSAENVIYRVLRQRHIKETVNQNEKMKH- 3181

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                E+ + +    N   +     +    +   + +    A       E L D +D+++ 
Sbjct: 3182 ----ERNAAIADARNKMEEARQSERDELLEAQRQELMDLIANAGDMTEEELADKKDDLLR 3237

Query: 622  EESTGVIRKRRRRRRRRRPATDH-----HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
            +  T ++   +   +R   A                ++  +  + +  D   + S     
Sbjct: 3238 QHKTQLMEFDKVTGQRVEQAEKDVLPGLDVKQAHEKLALKEKQLQELADAMRDISHGEED 3297

Query: 677  NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +            D      +  +            KK +  +RR+
Sbjct: 3298 MVRRYSEEAAKAAEDAKKFRETKMKTLKEQMDQIKAEKKKQDDERRR 3344


>gi|322647835|gb|EFY44312.1| ribonuclease G [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
          Length = 69

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391
               +  Y    PIF    +E ++    + +V L S GY+II+QTEA+ ++D+N+G    
Sbjct: 1   MTSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 60

Query: 392 EHCIEDTAL 400
              ++DT  
Sbjct: 61  HRNLDDTIF 69


>gi|227499940|ref|ZP_03930033.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227218049|gb|EEI83322.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 309

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 72/171 (42%), Gaps = 3/171 (1%)

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
           + +I   +        +    + SY    +  E             ++  L +       
Sbjct: 133 TRLIEEEKFFPTPKILYKNSFLASYLSKNKDLEVREVNIEDFNPYKEVLKLIKDPRPSLG 192

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
              +II+Q E L  IDVNS     ++  +      NL+  + I   L++R++ G++++DF
Sbjct: 193 DSSLIIDQLETLTVIDVNSSAEKSKNNKDKFLENINLKLIDLIIYNLKIRNIGGMVLIDF 252

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478
           +     K+   +E+  ++  ++     ++   S  GL EM+ +R  +S+++
Sbjct: 253 LR---NKDKEKIEESFRQKAEEKGLECEIYGFSLMGLFEMTIKRRGASLID 300


>gi|71980588|ref|NP_001020985.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans]
 gi|82583720|sp|O01761|UNC89_CAEEL RecName: Full=Muscle M-line assembly protein unc-89; AltName:
            Full=Uncoordinated protein 89
 gi|31746683|gb|AAP68958.1| Uncoordinated protein 89, isoform b, partially confirmed by
            transcript evidence [Caenorhabditis elegans]
          Length = 8081

 Score = 57.7 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                 + +   K  S         +     +      + + +S ++       E+     
Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683
            +K +   +              S   S +            P  + +         E   
Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                E          TPE  ++     P  K+ 
Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831


>gi|294010251|ref|YP_003543711.1| putative ribonuclease [Sphingobium japonicum UT26S]
 gi|292673581|dbj|BAI95099.1| putative ribonuclease [Sphingobium japonicum UT26S]
          Length = 329

 Score = 57.7 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 28/225 (12%)

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
            ++         F   G    ++     E+       + I  T A++ IDV+        
Sbjct: 125 PVIPCPAHEEDRFEAHGWSELMEEAISGEIGTEEAA-LRIFPTPAMILIDVDG------- 176

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
                  +   + A+  A+ +R   L G I +D   M  K        ++ + L     R
Sbjct: 177 --SLPPAKLGPKGAKLAAQAIRRLGLTGSIGIDLPTMNNKDERAVASAQIDKYLPLPFER 234

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
             V   + FG +++ R+R R +++E                   + AL++LR  E     
Sbjct: 235 TAV---NGFGFVQIIRRRERMNLMELLRAD-----------PVETAALALLRRAER---H 277

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
                  +     ++  L       I     R G +I +     L
Sbjct: 278 GNGGPATIAAAPPIIDRLHKAT-GWIETLARRRGGAIGLKADAAL 321


>gi|325479027|gb|EGC82128.1| ribonuclease, Rne/Rng family [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 309

 Score = 57.7 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389
               +          I   S  +  L+ +   + +      +II++ E L  IDVN+   
Sbjct: 156 NYLEKQGPIEVREGNINDLSEFKDCLNLIKDRKPSYKEY-SLIIDELETLTVIDVNTDSK 214

Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449
             ++  +      NL+  + I   L+LR++ G++V+DF+     KN   VE+  ++ +++
Sbjct: 215 KSKNNKDKFLENINLDLIDFIVYNLKLRNIGGMVVIDFLR---NKNKEVVEESFRKKVEE 271

Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
                ++   +  GL E++ +R   S+ +  
Sbjct: 272 MNLEAEIFGFTAMGLFELTIKRRGDSLRKDL 302



 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60
          M + + ID    E+  V  + D R+ E+ F       + GNIY  KVT    +L A F++
Sbjct: 1  MTDFIFID---KEKKLVAKIEDVRIVEVKF----YDSLIGNIYRGKVTNKIDALNAYFIE 53

Query: 61 Y 61
          Y
Sbjct: 54 Y 54


>gi|255527002|ref|ZP_05393894.1| ribonuclease G [Clostridium carboxidivorans P7]
 gi|255509312|gb|EET85660.1| ribonuclease G [Clostridium carboxidivorans P7]
          Length = 61

 Score = 57.3 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62
            + I+       R+ +  ++ ++E   E E  +   G IY   V  + P+++ AFVD G
Sbjct: 2  KDIFIER-QNNLLRIAIKENDILKECFIEEETGEPYPGEIYKGVVKNIVPAIKCAFVDIG 60

Query: 63 G 63
           
Sbjct: 61 Q 61


>gi|71980604|ref|NP_001020990.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans]
 gi|54607254|gb|AAV34801.1| Uncoordinated protein 89, isoform g, partially confirmed by
            transcript evidence [Caenorhabditis elegans]
          Length = 7122

 Score = 57.3 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                 + +   K  S         +     +      + + +S ++       E+     
Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683
            +K +   +              S   S +            P  + +         E   
Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                E          TPE  ++     P  K+ 
Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831


>gi|307293563|ref|ZP_07573407.1| putative ribonuclease [Sphingobium chlorophenolicum L-1]
 gi|306879714|gb|EFN10931.1| putative ribonuclease [Sphingobium chlorophenolicum L-1]
          Length = 329

 Score = 57.3 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425
                + I  T A++ IDV+               +   + A+  A+ +R   L G I +
Sbjct: 156 TEEAALRIFPTPAMILIDVDG---------SMPPAKLGPKGAKLAAQAIRRMGLTGSIGI 206

Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485
           D   M  K        ++ + L     R  V   + FG +++ R+R R +++E       
Sbjct: 207 DLPTMNNKDERAVASAQIDKYLPLPFERTAV---NGFGFIQIIRRRERMNLMELLRAD-- 261

Query: 486 YCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR 545
                       + AL++LR  E            +     ++  L       I +   R
Sbjct: 262 ---------PVETAALALLRRAER---HGNGGPATITAAPAIIDRLHKAT-DWIEQLAKR 308

Query: 546 FGVSINVVIGIEL 558
            G +I +     L
Sbjct: 309 RGGAIGLKADAAL 321


>gi|1160355|gb|AAB00542.1| UNC-89 [Caenorhabditis elegans]
          Length = 6632

 Score = 57.3 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                 + +   K  S         +     +      + + +S ++       E+     
Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683
            +K +   +              S   S +            P  + +         E   
Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                E          TPE  ++     P  K+ 
Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831


>gi|71980586|ref|NP_001020984.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans]
 gi|20198774|gb|AAB54132.2| Uncoordinated protein 89, isoform a, partially confirmed by
            transcript evidence [Caenorhabditis elegans]
          Length = 6632

 Score = 57.3 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                 + +   K  S         +     +      + + +S ++       E+     
Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683
            +K +   +              S   S +            P  + +         E   
Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                E          TPE  ++     P  K+ 
Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831


>gi|325117285|emb|CBZ52837.1| GA26239, related [Neospora caninum Liverpool]
          Length = 4152

 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 14/223 (6%)

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF------GVSINVVIG 555
             IL   E  L      +I     + V L     +R  +     ++      G  +  ++ 
Sbjct: 3066 DILEDTELILNLEKTKSIATEVSAKVALAKKTGER--LDTISEQYRPVARRGAVLFFLLS 3123

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                   FY+       A+++      ++    S + + + V             S    
Sbjct: 3124 ELFKMHTFYVYSMEAFVAVIHRAIDSVANKPPESAEPDGDEVGGAAEEASGEVDASP--- 3180

Query: 616  QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
                   E      ++++ RR R    +  +     D    +   DD+     +      
Sbjct: 3181 PSAEEEAEQKAGETRKKKARRSR-EGDEGDERSEDGDEEHEEVAADDTPSEASDAEADCR 3239

Query: 676  HNLLENGAHGFTENYDVSIPP--VSTPEMESSNSSSDPIVKKT 716
                         + D + P     T +   + ++  P   +T
Sbjct: 3240 EGAAGAEEKSSETDEDTTRPAEGEETRDAREAATAGQPEDGET 3282


>gi|212695699|ref|ZP_03303827.1| hypothetical protein ANHYDRO_00219 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677372|gb|EEB36979.1| hypothetical protein ANHYDRO_00219 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 308

 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 96/256 (37%), Gaps = 8/256 (3%)

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           +   +  LK   +     + +G I++     +       +F    + +   R        
Sbjct: 55  DKDKKAFLKSNKKFKIGDSLIGQIVKEEFDDK-LANFSANFRIENQDYFLYRFKNKGYPI 113

Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344
                ++     + + D+    I E   +      ++ +               Y     
Sbjct: 114 LKKGRKKNPKTYKDLLDIKNSLIDEENFTPSPKLLKSYN---EFDLYLEENKGYYCQEVD 170

Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404
           I     I   L ++   ++       +IIN+ E L  +DVNS +       +D   + N 
Sbjct: 171 IRNNKIIYDSLKTIGDEKI-YKGELSIIINKLETLCFVDVNSSKKRSTMDKDDFYYKVNE 229

Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464
           +  + I   L+LR++ G+IV+DF  ++   N + VE  + E++KK      +   +N GL
Sbjct: 230 DLIDFIFYNLKLRNIGGMIVIDF--LKSSYNYKLVE-IINENIKKYFKIYTIYGFTNMGL 286

Query: 465 LEMSRQRIRSSVLEST 480
            E+S +R   S+++  
Sbjct: 287 FEISIKREGESLIKKL 302


>gi|255028011|ref|ZP_05299997.1| hypothetical protein LmonocytFSL_19325 [Listeria monocytogenes
          FSL J2-003]
          Length = 159

 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78
          D+ + +++     +K   G+IY   + +++  ++AAFVD G N  GF+   +I   Y
Sbjct: 1  DDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVDLGNNNKGFIHLKDIPESY 57


>gi|302379404|ref|ZP_07267891.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna
            ACS-171-V-Col3]
 gi|302312749|gb|EFK94743.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna
            ACS-171-V-Col3]
          Length = 1398

 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 3/155 (1%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E     +     G K   D++ P  DK  E    D       K    E    +    E+ 
Sbjct: 1069 EDNKKPEIKKPEGEKKPGDTKKPEDDKKPEAKKPDAKKPEAEKKPEDEKKPGDNKKPETK 1128

Query: 626  GVIRKRR---RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                K+    ++   + P  +    G      + +   +   ++          N  +  
Sbjct: 1129 KPDVKKPEDNKKPEAKNPEGEKKPEGEKKPGDNKKPENNKKPEVNNPGKTTNPSNNKKQP 1188

Query: 683  AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                 +  DV  P   TPE     ++  P V+  +
Sbjct: 1189 EKTPEKTPDVKKPEAKTPEKTPEKNAKKPSVQNKK 1223



 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/167 (8%), Positives = 37/167 (22%), Gaps = 14/167 (8%)

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
                    F I++    +       KV   S      +      + E       ++  ED
Sbjct: 983  EAAKEGDEFIIQQQEKGKKDSPRISKVTQKSDKKQNPEKKPEAKKPEGEKKPGDTKKPED 1042

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
             ++    +         ++    ++P  D+    +       +       +   +P    
Sbjct: 1043 NKNPETKKPDVQKPEAEKKPGDNKKPE-DNKKPEIKKPEGEKKPGDTKKPEDDKKPEAKK 1101

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                                      + +    +  P  KK    K 
Sbjct: 1102 PDAKKPEAEKK-------------PEDEKKPGDNKKPETKKPDVKKP 1135



 Score = 39.2 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 38/154 (24%), Gaps = 3/154 (1%)

Query: 565  IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            + K S                         E   + +  +   + +  +D        + 
Sbjct: 953  VTKVSKNGDRDAASLSTVVGEDGKWSVDLKEAAKEGDEFIIQQQEKGKKDSPRISKVTQK 1012

Query: 625  TGVIRKRRRRRRRRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +   +   ++   ++P  +    D     D  + +    D      E     N    +N 
Sbjct: 1013 SDKKQNPEKKPEAKKPEGEKKPGDTKKPEDNKNPETKKPDVQKPEAEKKPGDNKKPEDNK 1072

Query: 683  AHGFTENYDVSIP-PVSTPEMESSNSSSDPIVKK 715
                 +      P     PE +    +  P  KK
Sbjct: 1073 KPEIKKPEGEKKPGDTKKPEDDKKPEAKKPDAKK 1106


>gi|226330542|ref|ZP_03806060.1| hypothetical protein PROPEN_04460 [Proteus penneri ATCC 35198]
 gi|225201337|gb|EEG83691.1| hypothetical protein PROPEN_04460 [Proteus penneri ATCC 35198]
          Length = 52

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIK 39
           +MLI+A+  EE RV ++   R+ +LD ES   +Q K
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKK 38


>gi|296284360|ref|ZP_06862358.1| ribonuclease [Citromicrobium bathyomarinum JL354]
          Length = 320

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 29/197 (14%)

Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425
            + G +I++   A+  ID++   S R+  +       +          LR  DLAG I +
Sbjct: 143 FAGGSLIVSPAPAMTVIDIDGDLSPRDLALAAVPALADT---------LRRFDLAGSIGI 193

Query: 426 DFIDMEEKKNNRSVEKKLKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
           DF  + EK   R+V+  L+E+L      R    A++ FG +++  +  R S+L       
Sbjct: 194 DFPTLAEKAQRRAVDDALEEALSGWPHERT---AMNGFGFVQLVARLERPSLLHRLHHN- 249

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544
                       S+ A  +LR  E  L +     +++  H  V   L     A + E   
Sbjct: 250 ----------RTSAAARMLLRRGE--LAEGIGPRLLLRAHPAVADRLS---HAWLAELAR 294

Query: 545 RFGVSINVVIGIELADK 561
           R G  + V     LA +
Sbjct: 295 RSGRKVEVERYPALALE 311


>gi|311265324|ref|XP_003130599.1| PREDICTED: LOW QUALITY PROTEIN: protein ELYS-like [Sus scrofa]
          Length = 2374

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 116/370 (31%), Gaps = 31/370 (8%)

Query: 363  VTLPSRGYVIINQTEALV--SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420
              L    +  + +T A+      +N   S+R          +   A +E +  +   ++ 
Sbjct: 1819 TKLAKTPFKTVQETSAVTINVSQINDMISSRTRKKRRVQDMSVKSAHQEESADVATPEML 1878

Query: 421  GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
            GL +     M++ +  + +    + +   D+   Q    +    +   R R +  + + T
Sbjct: 1879 GLSI-----MKKTRKTKEISGAFESASSDDKGISQ-NQQTPQNSVTPRRGRRKKEINQDT 1932

Query: 481  TKVCTYCK-------GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
            ++     +       G    R +SS  L  +     +       ++   T   +   + N
Sbjct: 1933 SEDINSVEQELEATPGRELRRVKSSQLLESVTEESSFRKDVKLSSVTKRTPKRIKKSVEN 1992

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            Q+       E    + ++ +     +       K        +      S  Q     +N
Sbjct: 1993 QES-----VEVINDLKVSKIASPSRST-----RKLRSACLETSESTAGESTEQQLPLQRN 2042

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                 ++ +   + +    +  Q    +E  T    ++R R R+  P+ D     V    
Sbjct: 2043 RRVRKREGSASDVVEDSKFDSSQRKPPAEFDTPATPRKRGRPRKTNPSEDVESKAV---- 2098

Query: 654  SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                    ++ +        T +   ++G     +    +   V + E+ +  SS     
Sbjct: 2099 --KGARSPETREGLNIQRRSTRNTPAKSGNTEVGKLALETSVFVPSEELATPVSSKKKPT 2156

Query: 714  KKTRWWKRRK 723
            K+T    +++
Sbjct: 2157 KRTENQSQKR 2166


>gi|87199078|ref|YP_496335.1| ribonuclease [Novosphingobium aromaticivorans DSM 12444]
 gi|87134759|gb|ABD25501.1| ribonuclease [Novosphingobium aromaticivorans DSM 12444]
          Length = 332

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 27/226 (11%)

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
             VR        F   G +  ++     E+     G ++++ T A+  IDV+        
Sbjct: 123 DHVRILPATDRTFVECGWDELVEQAQSGEIPFA-GGSLLVSPTPAMTLIDVDG------- 174

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
                  Q  L A   IA  L   D+ G + +DF  ++++K+ ++++  L+ +L +   R
Sbjct: 175 --FGQPAQLALAAVPAIAGALMRLDIGGNVGIDFPTVQDRKDRQAIDAALEAALAEAGWR 232

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
            +   ++ FG +++  +  R S++                   ++ A  +LR  E     
Sbjct: 233 GERTGMNGFGFVQLVSRLERPSLV-----------ARYARNPAAASARILLRQAERVA-- 279

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
                ++          L   +   + E   R G  + +     LA
Sbjct: 280 EPGALLLCANP----RTLDAMRPDWLEELARRTGRVVRLAPDPALA 321


>gi|84994972|ref|XP_952208.1| DNA helicase (SGS1 homologue) [Theileria annulata strain Ankara]
 gi|65302369|emb|CAI74476.1| DNA helicase (SGS1 homologue), putative [Theileria annulata]
          Length = 875

 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 35/147 (23%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             +           + T     +  + PS  +  +           PK E     +++  
Sbjct: 726 PNYRDNLKFMSTIYIPTKKDTTNRKKRPSAPRPKKEPKDKAPKTLGPKVEKKRPKKESPK 785

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             + T    ++      R+P     D       SS              P      +   
Sbjct: 786 EGDDTPTKPRKSSGGTPRKPRKKSEDTPTKPKKSSGDTPRKPRKKSSDTPPKPRRKSNSS 845

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNS 707
                   +   S P     +++  +S
Sbjct: 846 PRKPKLNSDDSPSEPKRKRLKLQKPSS 872



 Score = 46.1 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%)

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           K      +     P PK E  +     +        + K+R ++   +   D       S
Sbjct: 743 KKDTTNRKKRPSAPRPKKEPKDKAPKTLGP-----KVEKKRPKKESPKEGDDTPTKPRKS 797

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS---------TPEM 702
              + +     S D   +P   +     +              PP            P++
Sbjct: 798 SGGTPRKPRKKSEDTPTKPKKSSGDTPRKP------RKKSSDTPPKPRRKSNSSPRKPKL 851

Query: 703 ESSNSSSDPIVKKTRWWKR 721
            S +S S+P  K+ +  K 
Sbjct: 852 NSDDSPSEPKRKRLKLQKP 870


>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
           DSM 5159]
 gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
           DSM 5159]
          Length = 790

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 29  DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77
           + E   +    G I+  +V  + PS   AFV+    + GFL   EI P+
Sbjct: 623 EIERLTRVPEVGEIFYGRVVTIIPS--GAFVEILPGKDGFLHISEIAPE 669


>gi|194753654|ref|XP_001959125.1| GF12728 [Drosophila ananassae]
 gi|190620423|gb|EDV35947.1| GF12728 [Drosophila ananassae]
          Length = 1572

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 80/301 (26%), Gaps = 28/301 (9%)

Query: 437  RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496
            +++ +        D     +   + F   E+  + +   +  +  ++  Y +      + 
Sbjct: 1168 KNLTRHFLSCCSSDSTNTNIRN-TKF---ELLLRDVGKQLPSNIYELINYIEAN----AI 1219

Query: 497  SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
               A   L+     +    A  +        V+ ++      I+    +      +   +
Sbjct: 1220 DEEAQQHLKK--RKVQAERAKVLRETRMIPKVIMVIEDFNKHIILLSKKAKAQNRLTDYL 1277

Query: 557  ELADK-LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                   F I+  S               + A       E    D      P+    E+ 
Sbjct: 1278 HFGTMRDFDIK--STDLKAAIERSISDGRNIAVDESHAEEDEDDDAQSCGYPEEVEDEED 1335

Query: 616  QDNIVSEESTGVIRKRRRR-----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
            +             +RRRR           +R+R P        +  D  S    +  S 
Sbjct: 1336 EPVQDEPVQVAEKSQRRRRVLSSDSEESQPKRKRGPKPAEKQKNLEEDPPSTSKSVR-SK 1394

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV---KKTRWWKR 721
                 P+  +      +G    + +  V          ++    SD      KKTR  + 
Sbjct: 1395 KDKKNPARTSQDKGSSDGEEPPSTSKTVRSKKDKKKPTQAPQEESDGDEQPAKKTRASRT 1454

Query: 722  R 722
            R
Sbjct: 1455 R 1455


>gi|213865433|ref|ZP_03387552.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi
          str. M223]
          Length = 68

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 3  NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAK 46
           +MLI+A+  EE RV ++   R+ +LD E++  ++ + +I  AK
Sbjct: 2  KRMLINATQQEELRVALVDGQRLYDLDIETDTSRKKRTSI-KAK 44


>gi|85373322|ref|YP_457384.1| ribonuclease [Erythrobacter litoralis HTCC2594]
 gi|84786405|gb|ABC62587.1| ribonuclease [Erythrobacter litoralis HTCC2594]
          Length = 317

 Score = 55.4 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 30/192 (15%)

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            G ++ + T A+  +D++   S RE  +               AR LR  DL G I +DF
Sbjct: 143 GGSLLFSTTPAMTLVDIDGDGSPRELALAAIPAL---------ARALRQFDLGGSIGIDF 193

Query: 428 IDMEEKKNNRSVEKKLKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
             + +K   ++V+  L E+L      R    A++ FG +++  +    S+L         
Sbjct: 194 PTIADKAGRKAVDAALGEALADWPHERT---AMNGFGFVQIVARLEGPSLLHRMATS--- 247

Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
                      + A   LR  E       A   ++  H  +   L   K   + E E R 
Sbjct: 248 --------RIGAAARMALRRGELV---EGAGVTLLTVHPALKAKL---KPEWLAELEKRT 293

Query: 547 GVSINVVIGIEL 558
           G    +     L
Sbjct: 294 GRPARLETDPGL 305


>gi|308464252|ref|XP_003094394.1| hypothetical protein CRE_06997 [Caenorhabditis remanei]
 gi|308247816|gb|EFO91768.1| hypothetical protein CRE_06997 [Caenorhabditis remanei]
          Length = 550

 Score = 55.0 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 33/144 (22%), Gaps = 5/144 (3%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
           H   + S +P          +  A  P  + +  +        +E     +K +++    
Sbjct: 64  HYRPAASSSPPRIPRRIDQQKPAAAPPPEQKDPQKPAPPEKKDQEKPAAEKKDQQKPAAA 123

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            P                Q           +P+        +       E  D   P   
Sbjct: 124 PPPEQKDPQKPAPPEKKDQEKPAAEKKDQQKPAAAPPPEQKDPQKPAPPEKKDQEKPAAE 183

Query: 699 TPEMESS-----NSSSDPIVKKTR 717
             + +            P  KK +
Sbjct: 184 KKDKQKPVPTEKKDQKKPEEKKDQ 207


>gi|94497799|ref|ZP_01304365.1| ribonuclease [Sphingomonas sp. SKA58]
 gi|94422688|gb|EAT07723.1| ribonuclease [Sphingomonas sp. SKA58]
          Length = 329

 Score = 55.0 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 28/226 (12%)

Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392
             +V             G    ++     EV       + +  T A++ IDV+       
Sbjct: 124 VPVVPCPAHEEDRLEAHGWSELMEEAMSGEVG-TEAAALRLYLTPAMLLIDVDG------ 176

Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452
                   Q   + A+  A+ +R   L+G I +D   M  K        ++ + L     
Sbjct: 177 ---SLPPAQLGPKGAKLAAQTIRRMGLSGSIGIDLPTMNNKDERMIAAAQIDKYLPLPFE 233

Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
           R  V   + FG L++ R+R R++++E                   + AL++LR  E    
Sbjct: 234 RTAV---NGFGFLQIIRRRERANLMELLLDNV-----------VLTAALALLRRAER--- 276

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
             T     +     V+  LL Q+   I     R G  + +     L
Sbjct: 277 HGTGGAATLIAAPAVID-LLRQRPDWIDLLARRRGGEVGLRADPAL 321


>gi|226330543|ref|ZP_03806061.1| hypothetical protein PROPEN_04461 [Proteus penneri ATCC 35198]
 gi|225201338|gb|EEG83692.1| hypothetical protein PROPEN_04461 [Proteus penneri ATCC 35198]
          Length = 108

 Score = 55.0 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)

Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269
           MPN  +   ISR+I      + LKE    LE+P GMG+I+RTAG  ++   +++D  Y +
Sbjct: 1   MPNNPRAGGISRRIEGEDRTE-LKEALSSLEIPDGMGLIVRTAGVGKSAEALQQDLSYRL 59

Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314
           R WD +++ A N  AP L+++E N+I RA RD    DI EI++  
Sbjct: 60  RHWDAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDN 104


>gi|227484629|ref|ZP_03914945.1| ribonuclease G and E [Anaerococcus lactolyticus ATCC 51172]
 gi|227237349|gb|EEI87364.1| ribonuclease G and E [Anaerococcus lactolyticus ATCC 51172]
          Length = 308

 Score = 54.6 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 5/171 (2%)

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV--QLDSLHQTEVTL 365
            +  +  E+ +  +   +         +    +     F          L    +     
Sbjct: 130 EKERLINEEKFFPSPKLLVENSSRDFYLASYRDYKIRDFDVRNSREFSNLKEELKKSELG 189

Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425
                +II++ + L  IDVN+ +   +   +D  L  NLE  + I   L+LR++ G++V+
Sbjct: 190 YKDLSIIIDELKTLTVIDVNTAKRKSKLNKKDFLLNVNLELIDFIVYNLKLRNIGGMVVI 249

Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476
           DF+  + K+    + +  +++ +K +   +V   S  GL E+S +R   S+
Sbjct: 250 DFLRTDGKE---ELREAFEDAARKYKLEAEVFGFSQMGLFEISIKRRGDSL 297


>gi|17552208|ref|NP_498392.1| THO Complex (transcription factor/nuclear export) subunit family
            member (thoc-2) [Caenorhabditis elegans]
 gi|14573810|gb|AAB47593.3| Tho complex (transcription factor/nuclear export) subunit protein 2
            [Caenorhabditis elegans]
          Length = 1437

 Score = 54.2 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 36/139 (25%), Gaps = 1/139 (0%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +           + + PS     +    D        S+  E         E  G  +K
Sbjct: 1243 SKESKKEPTTEDGEVKTPSPPPAKKTRIVDRLKRSDEPSKKDEKESPKDTESE-KGEGKK 1301

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            RR R + +    +        +    +    ++ +   E   + +       +    E  
Sbjct: 1302 RRERSKDKETGKEKRLEKDNKEREKDKERKRENGENQKEQKILKDQKQKSKPSDEKLEVA 1361

Query: 691  DVSIPPVSTPEMESSNSSS 709
              ++P     + +   S  
Sbjct: 1362 GPALPDPVPKKDDKKGSRK 1380


>gi|195014854|ref|XP_001984090.1| GH15196 [Drosophila grimshawi]
 gi|193897572|gb|EDV96438.1| GH15196 [Drosophila grimshawi]
          Length = 1895

 Score = 54.2 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 41/166 (24%), Gaps = 4/166 (2%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
            +      K    Q   +  ++  SD       K      ++       +       +  
Sbjct: 319 GNPQHKSCKPKESQLPASNSNETASDGAQREQGKRSRDTPREREENHRNRFREKRSERSR 378

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                S+    + R R R +    +  +    +         +  F+ Y E S+      
Sbjct: 379 ESKTASSRDRPRERSRERYKEKKRERSNEKQRARSKEGNRSRERRFERYKEKSEHFKAKP 438

Query: 679 LENGAHGF---TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            E         ++   +        E+       DP   K +   R
Sbjct: 439 RERSREKRLDSSKEKQLDRSNEKRRELSKER-QRDPNSSKDKTTSR 483



 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +           H+     +     +  +     +      +    E  ++    ++   
Sbjct: 353 RSRDTPREREENHRNRFREKRSERSRESKTASSRDRPRERSRERYKEKKRERSNEKQRAR 412

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                R R RR     +  +          +    DS           ++      +   
Sbjct: 413 SKEGNRSRERRFERYKEKSEHFKAKPRERSREKRLDSSKEKQL---DRSNEKRRELSKER 469

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
             + + S    ++   +   S++    ++ R 
Sbjct: 470 QRDPNSSKDKTTSRSTDKLASTAAKDERRDRT 501


>gi|302695909|ref|XP_003037633.1| hypothetical protein SCHCODRAFT_104612 [Schizophyllum commune H4-8]
 gi|300111330|gb|EFJ02731.1| hypothetical protein SCHCODRAFT_104612 [Schizophyllum commune H4-8]
          Length = 764

 Score = 54.2 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 63/227 (27%), Gaps = 10/227 (4%)

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA------TIVEYEARFGVSINVVIGIE 557
           LR +   + +       +     V    L++ R        + +   +   +   +    
Sbjct: 537 LRKIIALIPKMRDAYENLEDSVHVPTIKLDEDRQVLDDSLFLDDIYDKMEATFREISDAF 596

Query: 558 LA-DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
           L  D+ F      PV+ +        +    P        +  +E       S++  D  
Sbjct: 597 LNCDEEFVWLPPPPVKVIPPPRFASEARMLGPEVPP---VIDSEETTQEDNGSDADADGP 653

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
            + +   + G   + R R+ +    +    +      +  ++  +   +           
Sbjct: 654 FSRLDTPTPGPRTRSRARQAKASANSSRDTSTDTQRGARKRDTRETGTERKPPRKRSRPS 713

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +  +         ++PP       + +       K +   +R++
Sbjct: 714 PEPKRRSDRLAAKSKEALPPDGPVASRTRSGGRSKSPKDSGSRQRKR 760


>gi|70699860|gb|AAZ06829.1| ribonuclease G [Microbacterium arborescens]
          Length = 291

 Score = 54.2 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 4   KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRV 50
           +++I  S     ++ VL DN + E          + GN+YL +V  V
Sbjct: 245 RVMIVRSKNGRIQIAVLEDNVLVEHYVARNQDASLIGNVYLGRVQNV 291


>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 790

 Score = 54.2 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 3/161 (1%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQAL 89
            E   K    G+I+  +V  + PS    FV+    + GFL   E+ P Y      D   +
Sbjct: 625 IERMTKVPEVGDIFFGRVKTIIPS--GCFVEILPGKDGFLHISELEP-YRVNSVEDVVQV 681

Query: 90  LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149
            +E N+  T               + +D    E A          ++             
Sbjct: 682 GQELNVVVTGIRPDGKINLSRKALLTSDADQREPASAGAGRGGRRQDDRGGRGQRGGDRD 741

Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190
               G   +   +   R    +    +    L++  ++ R 
Sbjct: 742 RRGGGDRDQRGRQPEARDQRPKPRPDDGGQALMRRPRDSRT 782


>gi|325849902|ref|ZP_08170941.1| ribonuclease, Rne/Rng family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479926|gb|EGC83009.1| ribonuclease, Rne/Rng family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 308

 Score = 53.8 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421
           E        +IIN+ E L  +DVNS +       +D   + N +  + I   L+LR++ G
Sbjct: 187 EKIYKGELSIIINKLETLCFVDVNSSKKRSTMDKDDFYYKVNEDLIDFIFYNLKLRNIGG 246

Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           +IV+DF  ++   N + VEK +   LKK      +   +N GL E+S +R   S+++  
Sbjct: 247 MIVIDF--LKSTLNEKLVEK-INGCLKKYFKTYTIYGFTNMGLFEISIKREGESLIKKL 302


>gi|56964861|ref|YP_176592.1| beta-N-acetylglucosaminidase [Bacillus clausii KSM-K16]
 gi|56911104|dbj|BAD65631.1| beta-N-acetylglucosaminidase [Bacillus clausii KSM-K16]
          Length = 1398

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 44/164 (26%), Gaps = 2/164 (1%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
            I                V+   +   +    S+    + + E    +        SE  +
Sbjct: 1074 IDENDTVPHSDEANDQTVEEDDHVADENEQASETTDTENDAENEESNLPASEEAPSEEND 1133

Query: 614  DIQDNI-VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
               ++     +          +      + D  +    ++    Q    D+     EP  
Sbjct: 1134 STDESSLEEPQEPETDPSTDEQEPETDASADEQEPETDANTDE-QEPETDASTDEQEPET 1192

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              + +  E      T+  +      +  +   +++S+D    +T
Sbjct: 1193 DASADEQEPKTDASTDEQEPETDASTDEQEPETDASADEQEPET 1236


>gi|149020534|gb|EDL78339.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 1503

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624
           K  P +          +  +     K      +  A       E  E ++       EE 
Sbjct: 55  KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 114

Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 RR RR+ R    R  +           + +    DD  D           +L  
Sbjct: 115 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 174

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                         PP    E E          KK
Sbjct: 175 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 209


>gi|20137608|sp|Q9Z330|DNMT1_RAT RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
           AltName: Full=DNA MTase RnoIP; Short=M.RnoIP; AltName:
           Full=DNA methyltransferase I; AltName: Full=MCMT
          Length = 1622

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624
           K  P +          +  +     K      +  A       E  E ++       EE 
Sbjct: 173 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 232

Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 RR RR+ R    R  +           + +    DD  D           +L  
Sbjct: 233 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 292

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                         PP    E E          KK
Sbjct: 293 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 327


>gi|214010196|ref|NP_445806.3| DNA (cytosine-5)-methyltransferase 1 [Rattus norvegicus]
 gi|149020535|gb|EDL78340.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_b [Rattus
           norvegicus]
          Length = 1621

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624
           K  P +          +  +     K      +  A       E  E ++       EE 
Sbjct: 173 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 232

Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 RR RR+ R    R  +           + +    DD  D           +L  
Sbjct: 233 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 292

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                         PP    E E          KK
Sbjct: 293 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 327


>gi|149020536|gb|EDL78341.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_c [Rattus
           norvegicus]
          Length = 1634

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624
           K  P +          +  +     K      +  A       E  E ++       EE 
Sbjct: 186 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 245

Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 RR RR+ R    R  +           + +    DD  D           +L  
Sbjct: 246 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 305

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                         PP    E E          KK
Sbjct: 306 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 340


>gi|4160670|dbj|BAA37118.1| DNA cytosine 5 methyltransferase [Rattus rattus]
          Length = 1622

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624
           K  P +          +  +     K      +  A       E  E ++       EE 
Sbjct: 173 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 232

Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 RR RR+ R    R  +           + +    DD  D           +L  
Sbjct: 233 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 292

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                         PP    E E          KK
Sbjct: 293 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 327


>gi|288869942|ref|ZP_06112364.2| 1,4-alpha-glucan branching enzyme [Clostridium hathewayi DSM 13479]
 gi|288869027|gb|EFD01326.1| 1,4-alpha-glucan branching enzyme [Clostridium hathewayi DSM 13479]
          Length = 997

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 34/147 (23%), Gaps = 1/147 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P                    +       + E      K    + I+D     +     
Sbjct: 831 KPGPQKTADKEPETGKITDKKPEAKKIEDKKTEPQKIADKRPEAKKIEDKKPETQKIADK 890

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +   ++   ++P T    A    +   I++   ++  +  +  +       +       +
Sbjct: 891 KPEAKKIEDKKPET-RKIADKKPEAKKIEDKKPETQKIADKKPEAKKIEDKKPETQKIAD 949

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715
               +             +   P  KK
Sbjct: 950 KKPEAKKIEDKKPETQKITDKKPEAKK 976



 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 35/158 (22%), Gaps = 1/158 (0%)

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
           L       E                  S             + E      K    + I+D
Sbjct: 800 LKAAEKKTEVKKTGLQRTAGKKNETEKSADKKPGPQKTADKEPETGKITDKKPEAKKIED 859

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                +     R   ++   ++P T    A    +   I++   ++  +  +  +     
Sbjct: 860 KKTEPQKIADKRPEAKKIEDKKPETQ-KIADKKPEAKKIEDKKPETRKIADKKPEAKKIE 918

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             +       +    +             +   P  KK
Sbjct: 919 DKKPETQKIADKKPEAKKIEDKKPETQKIADKKPEAKK 956



 Score = 41.9 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 34/120 (28%), Gaps = 4/120 (3%)

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            +AL    K   ++       + +     +   ++   ++ A    + G ++D       
Sbjct: 797 TKALKAAEKKTEVKKTGLQRTAGKKNETEKSADKKPGPQKTADKEPETGKITDKKPEAKK 856

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS----DPIVKK 715
           I+D      + +D              T+      P     E +   +       P  KK
Sbjct: 857 IEDKKTEPQKIADKRPEAKKIEDKKPETQKIADKKPEAKKIEDKKPETRKIADKKPEAKK 916


>gi|167647545|ref|YP_001685208.1| hypothetical protein Caul_3583 [Caulobacter sp. K31]
 gi|167349975|gb|ABZ72710.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 346

 Score = 53.1 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 11/189 (5%)

Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422
             LP  G V I  T ALV+IDV+ G   RE   +  A   N+ A    AR LRL+ LAGL
Sbjct: 156 FALPGGGDVSIEATRALVAIDVDLGG--REGDSKKAARAANMAAFTTAARVLRLKGLAGL 213

Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482
           +V D +      +  ++    + +   D   V +G IS FG LEM   R    +L+    
Sbjct: 214 VVFDLV--GRGHDGPALTTAARNAFAIDNPGVGLGPISKFGALEMVVPRRTKPILDRLLD 271

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
                 G     S  + AL ++R+ E          +       V         A     
Sbjct: 272 E---SGG----LSARAGALRLVRAFEREGRADPGGKLAGRCGPAVAKAFAALDAALADRI 324

Query: 543 EARFGVSIN 551
             RF +++ 
Sbjct: 325 GRRFTLAVV 333


>gi|256544884|ref|ZP_05472255.1| cytoplasmic axial filament protein [Anaerococcus vaginalis ATCC
           51170]
 gi|256399383|gb|EEU12989.1| cytoplasmic axial filament protein [Anaerococcus vaginalis ATCC
           51170]
          Length = 308

 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 4/156 (2%)

Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384
                    +          I     I   + ++ + ++       +IIN  E L  IDV
Sbjct: 151 YNEFDLYCEKNKDLELVELDIKNNKIISDSIKNIKEKKI-YKGDLSIIINDLETLCFIDV 209

Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444
           NS +       +D   + N +  + I   L LR++ G++V+DF  ++  KN   +  K+ 
Sbjct: 210 NSSKKKSTMDKDDFYYKVNEDLIDFIFYNLNLRNIGGMVVIDF--LKSSKN-DQLIDKIN 266

Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480
           E++KK     ++   +N GL E+S +R   S+ +  
Sbjct: 267 ENIKKYFDTYEIYGFTNMGLFELSIKRRGESLYKKL 302


>gi|170056240|ref|XP_001863941.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167876010|gb|EDS39393.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 643

 Score = 52.3 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 39/158 (24%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+    +       K        +  +      + +      + +   + Q      + T
Sbjct: 475 ERQKDRKTERQKDRKTERQKDRETERQKDRKTERQKDRKTERQKDRKTERQKTEDRRQKT 534

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R++   RR++                  +   +   D   E        + ++    
Sbjct: 535 EDRRQKTEDRRQKTEDRRQKTEDRRQKTEDRRQKTERQKDTETERQKDRKTGIQKDRKTE 594

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             ++           E +    +     +KT   K RK
Sbjct: 595 RQKDRKTERQKDRKTERQKDRKTERQKNRKTERLKERK 632



 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/190 (8%), Positives = 48/190 (25%), Gaps = 1/190 (0%)

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
           +R    + E +           +   +     +    +       +     +    ++  
Sbjct: 435 ERQKDRKTERQKDRKTERQKDRKPERQKDRKTERQKDRKTERQKDRKTERQKDRKTERQK 494

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDV 653
           +   + +      + +  +  +      E      +R++   RR+   D           
Sbjct: 495 DRETERQKDRKTERQKDRKTERQKDRKTERQKTEDRRQKTEDRRQKTEDRRQKTEDRRQK 554

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           +  +    +      E    T     ++   G  ++           E +    +     
Sbjct: 555 TEDRRQKTEDRRQKTERQKDTETERQKDRKTGIQKDRKTERQKDRKTERQKDRKTERQKD 614

Query: 714 KKTRWWKRRK 723
           +KT   K RK
Sbjct: 615 RKTERQKNRK 624



 Score = 46.9 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/165 (8%), Positives = 37/165 (22%), Gaps = 7/165 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---IVSE 622
           +K    +   +   +   D +            +D         ++     ++      +
Sbjct: 477 QKDRKTERQKDRKTERQKDRETERQKDRKTERQKDRKTERQKDRKTERQKTEDRRQKTED 536

Query: 623 ESTGVIRKRRRRRRRRRPATDHH----DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                  +R++   RR+   D      D    ++                   D      
Sbjct: 537 RRQKTEDRRQKTEDRRQKTEDRRQKTEDRRQKTERQKDTETERQKDRKTGIQKDRKTERQ 596

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +       +          T   ++  +      K  R   RR+
Sbjct: 597 KDRKTERQKDRKTERQKDRKTERQKNRKTERLKERKPKRHKNRRQ 641


>gi|307172721|gb|EFN64027.1| Myosin light chain kinase, smooth muscle [Camponotus floridanus]
          Length = 7605

 Score = 52.3 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 69/229 (30%), Gaps = 13/229 (5%)

Query: 505  RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
            +S+++  ++       +   ++    L   +   + + E +  V+    I  E+ +    
Sbjct: 4110 KSIKDERIKKDEKEHKITQETE---SLKKHEDGKVKQIEKQEKVNATESIKDEIQESKKI 4166

Query: 565  IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            IE            +K   +      +K  +   Q        K    +        +  
Sbjct: 4167 IETEKIKSEKNEQQNKENYEEINKMAEKQEQETVQKRKESDKSKKIEKDLNVKEETGKIK 4226

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                +   R++ + +      +     ++  I+  + ++ + Y + ++I      E    
Sbjct: 4227 LEEAKDIERKKVQAKEKEKADEIKKEQELKDIKEKVKEATEQYDKKNEIEKLQKKETDEI 4286

Query: 685  GFTENYDVSIPPVSTPEMESSNSS----------SDPIVKKTRWWKRRK 723
              T+  +     +   E+   +             D  +KK    + ++
Sbjct: 4287 DKTQQKEQEHVRIEKTEIVEKDHKIEVKEIKKQEEDKTIKKDGKEQEKE 4335


>gi|254418850|ref|ZP_05032574.1| S1 RNA binding domain protein [Brevundimonas sp. BAL3]
 gi|196185027|gb|EDX80003.1| S1 RNA binding domain protein [Brevundimonas sp. BAL3]
          Length = 346

 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 12 VEETRVVVLRDNRVEELDFESE-----HKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
            ETR  VLRD R   L    +     H+   +    + +VT + P L+ AFVD G    
Sbjct: 13 PGETRGAVLRDGRYTHLLIHRDGDLPQHRLGARS---VGRVTEINPGLRGAFVDLGAGAP 69

Query: 67 GFLPFL 72
           FLPF 
Sbjct: 70 AFLPFH 75



 Score = 46.1 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 356 DSLHQTEVTLPSRG-YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414
           +    +     S G  + I +T AL+++D++    T     +      N     + AR +
Sbjct: 149 EEALASRHVFNSHGVDLAIERTRALIAVDIDHTAGT-GRDPKQARAAANRLGLNQAARLI 207

Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474
            LR+  GLIVVD +   E         K   +      +   G IS FGLL+MS    R+
Sbjct: 208 SLRNWGGLIVVDLVGDAEDAAAG---DKAARAAFSHEPQAVFGPISRFGLLQMSLPWRRT 264

Query: 475 SVLESTTK 482
            + E   +
Sbjct: 265 PIEEILFE 272


>gi|198458768|ref|XP_002138586.1| GA24859 [Drosophila pseudoobscura pseudoobscura]
 gi|198136459|gb|EDY69144.1| GA24859 [Drosophila pseudoobscura pseudoobscura]
          Length = 1483

 Score = 51.9 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 56/220 (25%), Gaps = 12/220 (5%)

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-L 562
                   +    A  +        V+ ++      I+    +      +   + L     
Sbjct: 1253 QHIKTRNVQAQRAKVLRETRLIPKVIMVIEDFNKHIILLSKKTKTFNRLTDYLHLGTMRD 1312

Query: 563  FYI---------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
            F I         E+       V        D +   +  +     +DEA   I ++ +  
Sbjct: 1313 FDIKSTDLKAAIERSLTDTHEVAEDDCTTEDMEDIDHSNDPSNDEEDEAETEIIQAPNKR 1372

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRR--RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
              Q      ++     KR R ++ +  + A    +    S+   ++ +         +  
Sbjct: 1373 QRQRRAPISDTEESQPKRTRGQKTKVVQSAKPQSNDEQESNEEQLETIQTTKLRNRTKKR 1432

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                   L N      E            + +  ++   P
Sbjct: 1433 QTKKSTRLSNEEESAEERGLTEQRTKDMRKSQERDTGVKP 1472


>gi|304319972|ref|YP_003853615.1| hypothetical protein PB2503_01977 [Parvularcula bermudensis
           HTCC2503]
 gi|303298875|gb|ADM08474.1| hypothetical protein PB2503_01977 [Parvularcula bermudensis
           HTCC2503]
          Length = 415

 Score = 51.5 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415
           +   +    +P  G + I +TEA  ++D++  +            +   EA   + R L 
Sbjct: 201 EEALRHRHIIPGGGALTIEETEAAFTVDLDLAQGA-GQSKAGAGSRLLAEAMRPLGRLLS 259

Query: 416 LRDLAGLIVVDFIDM---EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
           L    G I++D         K     + + LK        RV V A++  G   +   R 
Sbjct: 260 LAGAGGQILIDAPRGAIAAPKIFRDQLTRALKPLG-----RVSVPAVTPEGCALVVAPRP 314

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           R S L   T+        G   S      S  R++   L +       +     +   L+
Sbjct: 315 RPSTLMKLTEPFGQGVVQGRRMSAPVARASAYRALAAALERNPTAQRRLVVAPRLAEGLV 374

Query: 533 NQK-RATIVEYEARFGVSINVVIGIELA 559
            +   A ++    R+G    +++     
Sbjct: 375 GEGPAAHLMR--ERYGPRFEILVDRTFE 400


>gi|302381051|ref|ZP_07269511.1| ribonuclease, Rne/Rng family [Finegoldia magna ACS-171-V-Col3]
 gi|302311098|gb|EFK93119.1| ribonuclease, Rne/Rng family [Finegoldia magna ACS-171-V-Col3]
          Length = 334

 Score = 51.5 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 118/340 (34%), Gaps = 32/340 (9%)

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
              ++E  +I  A         D      +     F       + +K    +LVQ+ KE 
Sbjct: 22  GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKES 81

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
            G+K    TT +++                         + K   +     +       I
Sbjct: 82  IGDKYPKFTTKITIETENLKYTNGD----------KLTFEGKQKYKDIDDFKQKYEFTGI 131

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +      + K + +++  +++     +         P L+Y++  + K    +     I+
Sbjct: 132 VGENFFKQEKAQQEKEMNFILNNLRYIETEKKFLPIPKLLYKKNPVYKIIQEENVDYLIT 191

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
              +   +                     ++++ +   + + I   +   +   + L + 
Sbjct: 192 NDKIVYRQYKEIL--------------NVKFDENYNYNYDNLISRDIIDKNSEIIKLDNN 237

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
             ++I +TEA+  +DVNS +            + N +A ++I + + L+ + G+++VD +
Sbjct: 238 AEIVIQKTEAMWVVDVNSSQMIMSEDYF---HELNTKALKKIHQMIYLKKMVGMVIVDCV 294

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
               + +N+ +   +K+   +    +     SN  LLE +
Sbjct: 295 R---EGDNKKLSDFIKDEFCEPN--INFHGFSNLNLLEFT 329



 Score = 41.5 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 80/270 (29%), Gaps = 22/270 (8%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL---PFL-------EIHPDYYQIPFSD---- 85
           GNIY+AK+T+ +  L A F++Y   + GFL    F        EI     +    D    
Sbjct: 29  GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKESIGDKYPK 88

Query: 86  ---RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
              +  +  E+       +   +               E    +     + E+       
Sbjct: 89  FTTKITIETENLKYTNGDKLTFEGKQKYKDIDDFKQKYEFTGIVGENFFKQEKAQQEKEM 148

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
           N +++N+  ++         K   +      I   + +   I  ++   +       +  
Sbjct: 149 NFILNNLRYIETEKKFLPIPKLLYKKNPVYKIIQEENVDYLITNDKIVYRQYKEILNVKF 208

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
              Y     N +    ISR I +        +    + +     + +    +S+  +   
Sbjct: 209 DENY-----NYNYDNLISRDIIDKNSEIIKLDNNAEIVIQKTEAMWVVDVNSSQMIMSED 263

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
              E   +    + ++        +V  + 
Sbjct: 264 YFHELNTKALKKIHQMIYLKKMVGMVIVDC 293


>gi|225389915|ref|ZP_03759639.1| hypothetical protein CLOSTASPAR_03665 [Clostridium asparagiforme
           DSM 15981]
 gi|225044026|gb|EEG54272.1| hypothetical protein CLOSTASPAR_03665 [Clostridium asparagiforme
           DSM 15981]
          Length = 899

 Score = 51.5 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 55/199 (27%), Gaps = 15/199 (7%)

Query: 533 NQKRATIVEYEARFGVSINVVIG---IELADK-------LFY---IEKGSPVQALVNTGH 579
            ++    +E    + + I+ +      ++ D         FY   +      +       
Sbjct: 254 GEENEIALEVGKEYKLPISFITDIPGDDMIDPVNERSQVDFYKAPLPDLEQNENKQEEVV 313

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           +  S S     +   +    DE+    P  +  E     +   E          +     
Sbjct: 314 EDVSQSNPSLDESGPDNPTVDESEQDNPTVDESEQDNPPVDEPEQDNPSVDEPEQGNPPV 373

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT--ENYDVSIPPV 697
             ++  +  V     S   V +   +         N+  ++    G    +  +   PPV
Sbjct: 374 DESEESNPPVDEPEESNPPVDEPEENNPPVDEPEENNPPVDEPEQGNPPVDEPEEGNPPV 433

Query: 698 STPEMESSNSSSDPIVKKT 716
             PE ++         KK+
Sbjct: 434 DEPEQDNEPEEKSGDYKKS 452


>gi|321467016|gb|EFX78008.1| hypothetical protein DAPPUDRAFT_105663 [Daphnia pulex]
          Length = 4511

 Score = 51.1 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 76/280 (27%), Gaps = 6/280 (2%)

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            KES +KDR + +        L E   ++      E   ++    +    +  +      I
Sbjct: 2227 KESGEKDRLQKETEEKDRL-LKEEEEKQRIQIESEEKDRLQKEAEEKDRLLKEEEEKRRI 2285

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
             +  EE                +       +KR    E E +  +         L  +  
Sbjct: 2286 QKESEEKDRLQKEAEEKDRLLKE-----EEEKRRIQKESEEKDRLQKEAEEKDRLLKEEE 2340

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
              ++        +   K   +      ++  +   Q E+       +  E+    +  EE
Sbjct: 2341 EKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEE 2400

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                I+K    + R +   +  D  +  +    +   +      ++        LL+   
Sbjct: 2401 EKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKETEEKDRLLKEKE 2460

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   +         E E  +       +K R  K  +
Sbjct: 2461 EKQRMQKESEEKDRLQKEAEEKDRLLKEEEEKRRIQKESE 2500



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 74/610 (12%), Positives = 181/610 (29%), Gaps = 35/610 (5%)

Query: 80   QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
            Q    ++   L+E    Q   E   +          N+  L E     +   E E++ + 
Sbjct: 2147 QKEVEEKDQFLREEVNRQRLQEEAEEKDRIQKEAEENERLLRESEEKQHLQMEAEKDRL- 2205

Query: 140  SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
                +       +K    +   +K   +    +     +  L++  +E++  +  +    
Sbjct: 2206 --QKEAEEKDRLLKEEDEKQRIQKESGEKDRLQKETEEKDRLLKEEEEKQRIQIESEEKD 2263

Query: 200  LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
                           + E    +  +    +  KE      +        R    S  K 
Sbjct: 2264 RLQKEAEEKDRLLKEEEEKRRIQKESEEKDRLQKEAEEKDRLLKEEEEKRRIQKESEEKD 2323

Query: 260  EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
             ++++ E   RL     E            EE + +++   +       E      +   
Sbjct: 2324 RLQKEAEEKDRLLKEEEEKQRIQKES----EEKDRLQKEAEEKDRLLKEEEEKQRIQKES 2379

Query: 320  EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
            E KD ++       R++++ E+   I   S  + +L    + +  L           +  
Sbjct: 2380 EEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKES 2439

Query: 380  VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
               D    + T E        +      +E   + RL+  A         ++E++  R +
Sbjct: 2440 EEKD-RLQKETEEKDRLLKEKEEKQRMQKESEEKDRLQKEAEE---KDRLLKEEEEKRRI 2495

Query: 440  EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            +   KES +KDR + +        L E   ++      E   ++    +    +  +   
Sbjct: 2496 Q---KESEEKDRLQKETEEKDRL-LKEEEEKQRMQKESEEKDRLQKEAEEKDRLLKEEEE 2551

Query: 500  ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559
               I + +EE                        +K   + E E +  +   +     L 
Sbjct: 2552 KQRIQKELEEKNRLQKETE---------------EKDRLLKEEEEKQRIQKELEEKDCLQ 2596

Query: 560  DKLFYIEKGSPVQALVNTGHKVGSDSQ-----APSYDKNIECVWQDEALLPIPKSESLED 614
             +L   E+        +   K   + Q         +   E +  +E  L   +++   +
Sbjct: 2597 KELEEKERLQKEAEEKDLLLKEAEEKQHFLTKTDEIEGTKEDIEAEEKDLTKNETQKEVE 2656

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            +   ++ EE +  + K  + +  ++        G        ++ I++  +  +    + 
Sbjct: 2657 VTKRLLKEEESVQLPKESKEKESKQDQQQKEVEGSQIKNDEDKSRINEVEERAVSDKQLD 2716

Query: 675  NHNLLENGAH 684
            + N   +   
Sbjct: 2717 SCNTRLSDTK 2726


>gi|241761776|ref|ZP_04759862.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373690|gb|EER63250.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 337

 Score = 51.1 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 27/189 (14%)

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
            G + +  T AL   D++    + +  ++ T         E  A+ + L  + G I +D 
Sbjct: 160 GGRLRMALTPALTLFDIDGHLGSLDLALKGT---------EATAKAITLFGIGGSIGIDI 210

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
             +  K + + V + L + L     R  V   + FG L++ RQ+ R S+ E         
Sbjct: 211 PGLSGKSDRQKVAECLDQHLPPPFERTGV---NGFGFLQIIRQKKRPSLPEQIAAY---- 263

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
                       A  +LR          A   I+     V+  L N+    +        
Sbjct: 264 -------PIEHEARQLLRQ---ACRAKGAGKRILTASHFVIDCL-NRHPDWLEALARESA 312

Query: 548 VSINVVIGI 556
             I +    
Sbjct: 313 AEIILKADP 321


>gi|315633769|ref|ZP_07889059.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter
            segnis ATCC 33393]
 gi|315477811|gb|EFU68553.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter
            segnis ATCC 33393]
          Length = 1520

 Score = 51.1 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 51/221 (23%), Gaps = 5/221 (2%)

Query: 503  ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
            I R     L         +    +        ++  +   EA     I      +   + 
Sbjct: 930  IFRLYNAKLENEKIEAERIAKEKEAARLAEEARQRELARLEAE---RIAKEKEEQARLEA 986

Query: 563  FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
              I K      L     +              +          I K +    + +     
Sbjct: 987  ERIAKEKEDARLAEEARQRELARLEAERIAKEKEEQARLEAERIAKEKEEARLAEEARQR 1046

Query: 623  ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            E   +  +R  + +  +   +        + + +           +E   I      +  
Sbjct: 1047 ELARLEAERIAKEKEEQARLEAERIAKEKEEARLAEEARQRELARLEAERIAKEKEEQAR 1106

Query: 683  --AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              A    +  + +       + E +   ++ I K+     R
Sbjct: 1107 LEAERIAKEKEAARLAEEARQHELARLEAERIAKEKEEQAR 1147


>gi|82538841|ref|XP_723854.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478292|gb|EAA15419.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1166

 Score = 51.1 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 87/334 (26%), Gaps = 12/334 (3%)

Query: 80  QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
           QI   DR     E      D     D+    D     D + E      N  ++  +E   
Sbjct: 505 QIKACDRDLQQSEFEKDGNDENDEKDEKDENDENDEKDENDENDEKDENDEKDENDEKKG 564

Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
           +  N  ++  E+    S  +  ++ + +    E  K      ++ V  +  +       +
Sbjct: 565 NEKNGEINYSENTVHESNVEKNQQIETENTTNESGKAVNFTDIRNVVNKYISNKKLNEKH 624

Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRT----AGAS 255
                +    +    K     +   N       K     +           T        
Sbjct: 625 NLKKRKEENDVNCKDKNIIYEKNQENKKINNEAKNEGFTMNGQNDNNYFYYTCNEQYSEK 684

Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315
           + K  +K       +L  +       S   +      +LI   I      D S I     
Sbjct: 685 KKKKNVKNVKYMKKKLLKDHINFLNLSFPEYSGLIRASLILICIYIFSFLDTSRIYHYIR 744

Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375
                    +  ++    R++R                 +       + L S  Y+I N 
Sbjct: 745 AQPFMKLYVVLNMLEILERLLRSLGKDLIDN--------MIRTFIRIINLRSYIYIIRNH 796

Query: 376 TEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
              + + D N    + E   + T +  N     E
Sbjct: 797 YNNMTNDDENFSNESLEGRRKKTYIINNSNILHE 830


>gi|169824060|ref|YP_001691671.1| ribonuclease G [Finegoldia magna ATCC 29328]
 gi|167830865|dbj|BAG07781.1| ribonucleases G [Finegoldia magna ATCC 29328]
          Length = 334

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 117/340 (34%), Gaps = 32/340 (9%)

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
              ++E  +I  A         D      +     F       + +K    +LVQ+ KE 
Sbjct: 22  GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKES 81

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
            G+K    TT +++                         + K   +     +       I
Sbjct: 82  IGDKYPKFTTKITIETENLKYTNGD----------KLTFEGKQKYKDIDDFKQKYTFTGI 131

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +      + K + +++  +++     +         P L+Y++  + K    +     I+
Sbjct: 132 VGENFFKQEKAQQEKEMNFILNNLHYIETEKKFLPIPKLLYKKNPVDKIIQEENVDYLIT 191

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
              +   +                     ++++ +   + + I   +   +   + L + 
Sbjct: 192 NDKIVYRQYKEIL--------------NVKFDENYNYNYDNLISRDIIDKNSEIIKLDNN 237

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
             ++I +TEA+  +DVNS +            + N +A ++I + + L+ + G+++VD +
Sbjct: 238 AEIVIQKTEAMWVVDVNSSQMIVGENYF---HELNTKALKKIHQMMYLKKMVGMVIVDCV 294

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
               + +N+ +   +K    +    +     SN  LLE +
Sbjct: 295 R---EGDNKKLSDFIKYEFCEPN--INFHGFSNLNLLEFT 329



 Score = 43.0 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 90/270 (33%), Gaps = 22/270 (8%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL---PFL-EIHPDYYQIPFSDRQALLKESNI 95
           GNIY+AK+T+ +  L A F++Y   + GFL    F  ++ P    +    ++++  +   
Sbjct: 29  GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKESIGDKYPK 88

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQ-------------ETEEESIISAN 142
             T      +++ + +         ++   I +F Q             + E+       
Sbjct: 89  FTTKITIETENLKYTNGDKLTFEGKQKYKDIDDFKQKYTFTGIVGENFFKQEKAQQEKEM 148

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
           N +++N+  ++         K   +    + I   + +   I  ++   +       +  
Sbjct: 149 NFILNNLHYIETEKKFLPIPKLLYKKNPVDKIIQEENVDYLITNDKIVYRQYKEILNVKF 208

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
              Y     N +    ISR I +        +    + +     + +    +S+  +   
Sbjct: 209 DENY-----NYNYDNLISRDIIDKNSEIIKLDNNAEIVIQKTEAMWVVDVNSSQMIVGEN 263

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
              E   +    + ++        +V  + 
Sbjct: 264 YFHELNTKALKKIHQMMYLKKMVGMVIVDC 293


>gi|195499745|ref|XP_002097077.1| GE26021 [Drosophila yakuba]
 gi|194183178|gb|EDW96789.1| GE26021 [Drosophila yakuba]
          Length = 2709

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 51/207 (24%), Gaps = 9/207 (4%)

Query: 508  EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
            E    +  A    +            +        E +  V  +     +         +
Sbjct: 858  ETESAEKKAEQPRLKKLPSTA-----ELEDRFNALERKMSVQKSSPSKNKKEPPD----E 908

Query: 568  GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
            G                    S D       +D       K E+ E       +++    
Sbjct: 909  GESKSTKEPEELDEPGREIDKSSDSQTPIATKDPKDSDQKKPETKETTTSPSKTQDQKVK 968

Query: 628  IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             +  +      +  ++  D     + S+ + V  +      + ++I N    E+      
Sbjct: 969  DKSPKSEESVEKQTSESKDDSQELETSTTKKVESNRKLSLEKGNNIVNEKREESPKKADK 1028

Query: 688  ENYDVSIPPVSTPEMESSNSSSDPIVK 714
            E  +     V    ++ S+S      K
Sbjct: 1029 ETAETKNENVENESLKKSDSQKKEATK 1055



 Score = 41.9 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 32/147 (21%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P+           S  Q  S   +     ++        ++  E               +
Sbjct: 809 PIDLKDEEPSGSSSKKQKDSEKTSKLHQAEEPESNTKETNQETETSDSKETESAEKKAEQ 868

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            R ++        D  +A          +   +  +   E    +     E    G   +
Sbjct: 869 PRLKKLPSTAELEDRFNALERKMSVQKSSPSKNKKEPPDEGESKSTKEPEELDEPGREID 928

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
                      +    +    P  K+T
Sbjct: 929 KSSDSQTPIATKDPKDSDQKKPETKET 955


>gi|171680121|ref|XP_001905006.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939687|emb|CAP64913.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1871

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 9/219 (4%)

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           LR + +      A    +    +V    L +K+      + +      +        +  
Sbjct: 710 LRELLKENQSLQATKEWLTEELEVATQKLEEKKQEREHLKEK-----ALSSNESSVTEPK 764

Query: 564 YIEKGSPVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
            +EK                  ++ P+  + +E   + E      + E L+ +++ +   
Sbjct: 765 DVEKPEEAVKTEAVAQPTEVLKTEEPAQAEAVEKAVEPETEAVEVEGEGLKTVEEGVKPV 824

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           E      +   +  +     +        + +             +EP      +  E  
Sbjct: 825 EEDVKPVEEDVKPDQGGVKPESEAVKAGEEGADTNQGGVKPTGEDVEPEKEGVESAKEKV 884

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                E  +V     +TP+ E++NS S+ + K  +  K 
Sbjct: 885 DP---EKEEVKSAEEATPKQEAANSESEDVGKDAKVEKE 920


>gi|269217804|ref|ZP_06161658.1| putative cylicin-2 [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212739|gb|EEZ79079.1| putative cylicin-2 [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 232

 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/156 (7%), Positives = 38/156 (24%), Gaps = 1/156 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E       + +        ++A   + +     + E  +    ++   +  +   +  + 
Sbjct: 27  ETAEGADVVSHAAEGGTDAAEADLAEVDDASAKRTEEDVKDVAAKGSGEDGEPEEAP-AK 85

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
           G   K+R  ++     +   D     + +   +            S              
Sbjct: 86  GKRGKKRASKKDAAKGSSKKDGSSEEETTEKGSKARRKQKESSAESSKKGSKKSSGNPEK 145

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            T+              +    +    ++  +WW  
Sbjct: 146 GTKRSTEKKAAEKKASSKERKPARVKGLQSPKWWAP 181


>gi|226947747|ref|YP_002802838.1| NlpC/P60 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841687|gb|ACO84353.1| NlpC/P60 family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 774

 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/172 (8%), Positives = 50/172 (29%), Gaps = 1/172 (0%)

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
             I    ++Y ++     +   +   V     N+K+   ++ E       +       A 
Sbjct: 495 NQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKAT 554

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           +    +K +       T      +++        E   ++        +E  +  +    
Sbjct: 555 EEAQ-KKAAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRKAAEEAQRKEAEES 613

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             ++    +++     +R+ A +       ++ S  Q     +       ++
Sbjct: 614 QRKAAEETQRKEAEEAQRKEAEEAQRKAAEAEASKSQQKEQSNVSEKAPATN 665


>gi|328718428|ref|XP_001946747.2| PREDICTED: hypothetical protein LOC100169050 [Acyrthosiphon pisum]
          Length = 3414

 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 39/158 (24%), Gaps = 14/158 (8%)

Query: 574  LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                  +   D +    D   E + +DE      K E  ++ + +    E      +R  
Sbjct: 1848 HKEDRRECHLDRKEERRDDRKEELRKDEPRREDRKDEPRKEDRKDEPRREDRKDEPRRED 1907

Query: 634  RRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME------------PSDITNHNLL 679
            R+   RR    D        D    +   +D  D   E                    + 
Sbjct: 1908 RKDEPRREDRKDEPRREDRKDDRKEEQRREDRKDERKEDRKIEIKEERKEEIKNDKKEIK 1967

Query: 680  ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                   T         + +  + +       + K+ +
Sbjct: 1968 SERLVNITHEERKVPKDIKSDRLVNITHEERKVPKEVK 2005


>gi|301621897|ref|XP_002940281.1| PREDICTED: hypothetical protein LOC100127703, partial [Xenopus
            (Silurana) tropicalis]
          Length = 2395

 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 9/165 (5%)

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC----VWQDEALLPIPKSESLEDIQDNI 619
             +++             +  D        +       V ++E  + + K+E    ++   
Sbjct: 2015 KVDRLEKASKGDRPDKALKVDRCEKRAKADRTEKPTKVDKNEKTVRVEKTEKPTKMEKTE 2074

Query: 620  VSEESTGVIRKRRRRRRRRRPATDHHDA--GVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
             +  +    +  R  R  +    +  +    +     S +       D   +P       
Sbjct: 2075 KATRAERSSKMVRTERPSKMDKPERPEKMPRLEKIEKSPKLEKASKNDKIEKPERSPRAE 2134

Query: 678  LLENGAHGFTENYDVSIPPVS---TPEMESSNSSSDPIVKKTRWW 719
              +   H   E  +   PP      P+ +     ++P  KK + W
Sbjct: 2135 KEKMERHVRIEKVEKVEPPPKAALKPKHKQVKVKAEPPPKKRKKW 2179


>gi|148699378|gb|EDL31325.1| zinc finger, imprinted 1, isoform CRA_a [Mus musculus]
          Length = 679

 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 9/207 (4%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV +Y   ++   +   +      + +     L    +YI K   +  L         ++
Sbjct: 154 DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 213

Query: 586 QAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
             P   +  E  V + +        ++    +        T  + K++   + R   +  
Sbjct: 214 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLR 273

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------GFTENYDVSIPP 696
            +    SD    QN    +     E S  +     EN +                    P
Sbjct: 274 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 333

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723
              P            ++ +    +RK
Sbjct: 334 SEKPTSGKDVEGKPQTMRSSSTNPKRK 360


>gi|156094854|ref|XP_001613463.1| PST-A protein [Plasmodium vivax SaI-1]
 gi|148802337|gb|EDL43736.1| PST-A protein [Plasmodium vivax]
          Length = 754

 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 33/154 (21%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              A            +  S +   +   + E  +PI     +    +  +S E      
Sbjct: 83  NNTANQAGNKTATEPERKASPEPEKKAPSEPEKKVPIEPDRKVSSEPERKISSEPERKAV 142

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               R+    P             +  +  I    +           +            
Sbjct: 143 TEPERKISSEPERKASTEAERKASTEAERKISSEPERKASTEAEKRTSPEPEKKTSNEPE 202

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             VS  P     +E     S    KK      RK
Sbjct: 203 RKVSTEPEKKVSIEPEKKVSIEPDKKAPTEPERK 236



 Score = 44.2 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 27/150 (18%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                       +  S +   +   + E          +    +   S E+         
Sbjct: 111 SEPEKKVPIEPDRKVSSEPERKISSEPERKAVTEPERKISSEPERKASTEAERKASTEAE 170

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           R+    P                +    +  +  +        ++          +    
Sbjct: 171 RKISSEPERKASTEAEKRTSPEPEKKTSNEPERKVSTEPEKKVSIEPEKKVSIEPDKKAP 230

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             P      E          KK      RK
Sbjct: 231 TEPERKAPTEPERKVPAEPEKKAPTDAERK 260



 Score = 43.8 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 34/153 (22%), Gaps = 2/153 (1%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +A      KV     A    K  E    +          + E  +      E       
Sbjct: 54  ARATQGETTKVTQSDTAKVTAKESEKEAMNNTANQAGNKTATEPERKASPEPEKKAPSEP 113

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            ++                +S     + V +    +  EP    +       +       
Sbjct: 114 EKKVPIEPDRKVSSEPERKISSEPERKAVTEPERKISSEPERKASTEAERKASTEAERKI 173

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  ++ E E   S      KKT     RK
Sbjct: 174 SSEPERKASTEAEKRTS--PEPEKKTSNEPERK 204


>gi|168177854|ref|ZP_02612518.1| putative peptidoglycan hydrolase [Clostridium botulinum NCTC 2916]
 gi|182670514|gb|EDT82488.1| putative peptidoglycan hydrolase [Clostridium botulinum NCTC 2916]
          Length = 774

 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/172 (8%), Positives = 50/172 (29%), Gaps = 1/172 (0%)

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
             I    ++Y ++     +   +   V     N+K+   ++ E       +       A 
Sbjct: 495 NQIATQDKKYGVKENNVIVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKAT 554

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           +    +K +       T      +++        E   ++        +E  +  +    
Sbjct: 555 EEAQ-KKAAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRKAAEEAQRKEAEEA 613

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             ++    +++     +R+ A +       ++ S  Q     +       ++
Sbjct: 614 QRKAAEETQRKEAEEAQRKEAEEAQRKAAEAEASKSQQKEQSNVSEKAPATN 665


>gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii
           RML369-C]
 gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
 gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii
           RML369-C]
 gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
          Length = 744

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 25/169 (14%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           I AS  ++ +V +   ++V+ +  E E      G ++   V ++  S   AFV+Y GN+ 
Sbjct: 598 IYASDKDKLKVAL---DKVKAIAIEPE-----IGEVFNGTVMKILDS--GAFVNYLGNKD 647

Query: 67  GFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126
           GF+   EI                +E   +        D V    +   N    +     
Sbjct: 648 GFVHISEIA---------------EERIESVGSVLKQGDIVKVKLIGFDNKGKAKLTIKN 692

Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIK 175
           A   + +      ++  +     +   G               +    K
Sbjct: 693 AEKDKSSANPKPKNSPKEHQEPEKRDNGKKRAWNEDNNAETTEVVTERK 741


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 38/159 (23%), Gaps = 6/159 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEESTGV 627
              +   N         Q  S       V  +        +   +  ++    +EE  G 
Sbjct: 409 KDKKQGGNRQRNRRPAVQNQSTADENSAVGLERKTNSRENAAPQKKQENRPAAAEEKGGN 468

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +  R+ + R +      D    SD     +          +           N      
Sbjct: 469 KKNNRQGKGRSQERQPKADNENRSDRKPASSKNAAGNSTSQQARKQNGKRKKRNNRQRVP 528

Query: 688 ENYDVSIP-----PVSTPEMESSNSSSDPIVKKTRWWKR 721
           E   V            P +   +S    ++KK   W R
Sbjct: 529 EEKAVRRSTKYDIREDFPAISKGDSGLKSLIKKPLKWLR 567



 Score = 39.6 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 64/246 (26%), Gaps = 29/246 (11%)

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           G  +I      +        + + ++ +  I V   +D+V   ++     I +       
Sbjct: 266 GRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGID-----IDDIAMVINY 320

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD------SQAPSYDKNIECVWQDEA 602
            +       +      I + +           V  D            DK +E +   E 
Sbjct: 321 DVPHDAEDYVH----RIGRTARADRDGKAITFVNVDDIYYFKQIESFLDKEVEKIPLPEE 376

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRR---------RRRRRRPATDHH----DAGV 649
           L   P+ +     +    ++      R ++          R+R RRPA  +     +   
Sbjct: 377 LGEGPEYKGNGKPKRGGNAKTRRRKDRDQQSHKDKKQGGNRQRNRRPAVQNQSTADENSA 436

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
           V       +  + +     E           N  +        S       + E+ +   
Sbjct: 437 VGLERKTNSRENAAPQKKQENRPAAAEEKGGNKKNNRQGKG-RSQERQPKADNENRSDRK 495

Query: 710 DPIVKK 715
               K 
Sbjct: 496 PASSKN 501


>gi|296133630|ref|YP_003640877.1| cell wall hydrolase SleB [Thermincola sp. JR]
 gi|296032208|gb|ADG82976.1| cell wall hydrolase SleB [Thermincola potens JR]
          Length = 497

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 20/168 (11%)

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                       EK  P   +            AP  +       + +  L +    +  
Sbjct: 67  ADEAKQAPD---EKAQPAPVVEAKPAPAEEVQPAPVVEAKPAPAEEVQPALVVEAKPAPA 123

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
           +    +   E+      +       +P +D        +V  +Q   ++      EP   
Sbjct: 124 EEVQPVPVVEA------KPAPANDSKPVSDKPRQMPGDEVRPVQTQRNE-----HEPVGN 172

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            N  +++       + +  +         +++ S      KK  WWKR
Sbjct: 173 LNTAVVDMSERVQADKFKTASGDKPRVPAKNNQS------KKEPWWKR 214


>gi|297262165|ref|XP_001093788.2| PREDICTED: SFRS2-interacting protein isoform 5 [Macaca mulatta]
          Length = 1546

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 40/178 (22%), Gaps = 1/178 (0%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 822 ADLKQMNDNSVTHSSENNMPSSDLADEKVETVSQPSESPKDTIDKARKPRTRRSRFHSPS 881

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q      E+    RK +    +   A     +   S    I   
Sbjct: 882 TTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARE 941

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              S     +          E+ +    T   +    P          S S    +++
Sbjct: 942 RRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRERES 999



 Score = 44.6 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 41/187 (21%), Gaps = 8/187 (4%)

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
           +  I + +  F          E+                        +       D ++ 
Sbjct: 782 KTHIEQIQKHFS-----EDNNEMIPMECD---SFCSDQNECEVEPSVNADLKQMNDNSVT 833

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
              ++         E +E +     S + T    ++ R RR R  +     +        
Sbjct: 834 HSSENNMPSSDLADEKVETVSQPSESPKDTIDKARKPRTRRSRFHSPSTTWSPNKDTPQE 893

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +     S           + +               S  P      E   S S    + 
Sbjct: 894 KKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRD 953

Query: 716 TRWWKRR 722
           T    RR
Sbjct: 954 TTRESRR 960


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score = 50.0 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 42/163 (25%), Gaps = 2/163 (1%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P       E+ Q  
Sbjct: 352 ASELFAIERLIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTA 411

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                      +RR     +    ++  +G         N    +     +  +  N+N 
Sbjct: 412 EKKNSDGNNKPRRRFNSDNKNDKGEN-KSGKAGAGKPKGNRDGQARSNGKQSGNKPNNNQ 470

Query: 679 LENGAHGFTENYDVSIPP-VSTPEMESSNSSSDPIVKKTRWWK 720
                 G ++N +   P     P       +     K +   +
Sbjct: 471 SGASKPGASKNGNGGKPSGNRKPNSGKPAGAKPSNGKPSGQRR 513


>gi|167462630|ref|ZP_02327719.1| hypothetical protein Plarl_08735 [Paenibacillus larvae subsp.
          larvae BRL-230010]
 gi|322382590|ref|ZP_08056468.1| hypothetical protein PL1_0859 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321153445|gb|EFX45852.1| hypothetical protein PL1_0859 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 109

 Score = 50.0 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 54 LQAAFVDYGGNRHGFLPFLEIHPD 77
          +QAAFVD G  ++ FL   ++ P+
Sbjct: 1  MQAAFVDIGLEKNAFLYIDDVLPE 24


>gi|1236239|gb|AAC42083.1| phosphoprotein [Mus musculus]
 gi|1589169|prf||2210338A nuclear phosphoprotein p150TSP
          Length = 1173

 Score = 50.0 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 32/143 (22%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +K               SD       +       D+                   S+E +
Sbjct: 1024 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 1083

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +  R+RRR     +D+         S      +DS                 +    
Sbjct: 1084 DSDQPSRKRRRSGSEQSDNESVQSGRSPSGASENENDSRPASPSAESDHESEQGSDNEGS 1143

Query: 686  FTENYDVSIPPVSTPEMESSNSS 708
               + + S P  S  E     S 
Sbjct: 1144 GQGSGNESEPEGSNNEASDRGSE 1166


>gi|303235317|ref|ZP_07321935.1| putative phage tail component, N-terminal domain protein
           [Finegoldia magna BVS033A4]
 gi|302493631|gb|EFL53419.1| putative phage tail component, N-terminal domain protein
           [Finegoldia magna BVS033A4]
          Length = 334

 Score = 50.0 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 116/340 (34%), Gaps = 32/340 (9%)

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
              ++E  +I  A         D      +     F       + +K    +LVQ+ KE 
Sbjct: 22  GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTPFTQDLKPSDEILVQMTKES 81

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
             +K    TT +++                         + K   +     +       I
Sbjct: 82  IDDKYPKFTTKITIETENLKYT----------NSDKLTFEGKQKYKDIDDFKQKYTFTGI 131

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308
           +      + K + +++  +++     +         P L+Y +  + K    +     I+
Sbjct: 132 VGDNFFKQEKAQQEKEINFILNKLRYIETEKKFLPIPKLLYRKNPVDKIIQEEKVDYLIT 191

Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368
              +   +                     ++++ +   + + I   +   +   + L + 
Sbjct: 192 NDKIVYRQYKEIL--------------NVKFDENYNYNYDNLISRDIIDKNSEIIKLDNN 237

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
             ++I +TEA+  +DVNS +            + N +A ++I + + L+ + G+++VD +
Sbjct: 238 AEIVIQRTEAMWVVDVNSSQMIMSEDYF---HELNTKALKKIHQMIYLKKMVGMVIVDCV 294

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
               + +N+ +   +K+   +    +     SN  LLE +
Sbjct: 295 R---EGDNKKLSDFIKDEFCEPN--INFHGFSNLNLLEFT 329



 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 85/265 (32%), Gaps = 12/265 (4%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL---PFL-EIHPDYYQIPFSDRQALLKESNI 95
           GNIY+AK+T+ +  L A F++Y   + GFL   PF  ++ P    +    ++++  +   
Sbjct: 29  GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTPFTQDLKPSDEILVQMTKESIDDKYPK 88

Query: 96  AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155
             T      +++ + +         ++   I +F Q+     I+  N       +  K  
Sbjct: 89  FTTKITIETENLKYTNSDKLTFEGKQKYKDIDDFKQKYTFTGIVGDNFFKQEKAQQEKEI 148

Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS--------LAGRYS 207
           +      ++         I         + K  +  K   + T           +     
Sbjct: 149 NFILNKLRYIETEKKFLPIPKLLYRKNPVDKIIQEEKVDYLITNDKIVYRQYKEILNVKF 208

Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267
               N +    ISR I +        +    + +     + +    +S+  +      E 
Sbjct: 209 DENYNYNYDNLISRDIIDKNSEIIKLDNNAEIVIQRTEAMWVVDVNSSQMIMSEDYFHEL 268

Query: 268 LMRLWDNVRELALNSVAPHLVYEEG 292
             +    + ++        +V  + 
Sbjct: 269 NTKALKKIHQMIYLKKMVGMVIVDC 293


>gi|154090953|ref|NP_033457.2| RNA polymerase-associated protein CTR9 homolog [Mus musculus]
 gi|91208163|sp|Q62018|CTR9_MOUSE RecName: Full=RNA polymerase-associated protein CTR9 homolog;
            AltName: Full=SH2 domain-binding protein 1; AltName:
            Full=Tetratricopeptide repeat-containing, SH2-binding
            phosphoprotein of 150 kDa; Short=TPR-containing,
            SH2-binding phosphoprotein of 150 kDa; Short=p150TSP
 gi|148685056|gb|EDL17003.1| Ctr9, Paf1/RNA polymerase II complex component, homolog (S.
            cerevisiae), isoform CRA_c [Mus musculus]
          Length = 1173

 Score = 50.0 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 32/143 (22%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +K               SD       +       D+                   S+E +
Sbjct: 1024 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 1083

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +  R+RRR     +D+         S      +DS                 +    
Sbjct: 1084 DSDQPSRKRRRSGSEQSDNESVQSGRSPSGASENENDSRPASPSAESDHESEQGSDNEGS 1143

Query: 686  FTENYDVSIPPVSTPEMESSNSS 708
               + + S P  S  E     S 
Sbjct: 1144 GQGSGNESEPEGSNNEASDRGSE 1166


>gi|42490816|gb|AAH66196.1| Zinc finger, imprinted 1 [Mus musculus]
          Length = 579

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 9/207 (4%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV +Y   ++   +   +      + +     L    +YI K   +  L         ++
Sbjct: 54  DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 113

Query: 586 QAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
             P   +  E  V + +        ++    +        T  + K++   + R   +  
Sbjct: 114 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLR 173

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------GFTENYDVSIPP 696
            +    SD    QN    +     E S  +     EN +                    P
Sbjct: 174 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 233

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723
              P            ++ +    +RK
Sbjct: 234 SEKPTSGKDVEGKPQTMRSSSTNPKRK 260


>gi|242332541|ref|NP_035899.4| zinc finger, imprinted 1 [Mus musculus]
 gi|26352123|dbj|BAC39698.1| unnamed protein product [Mus musculus]
 gi|148699379|gb|EDL31326.1| zinc finger, imprinted 1, isoform CRA_b [Mus musculus]
          Length = 579

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 9/207 (4%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV +Y   ++   +   +      + +     L    +YI K   +  L         ++
Sbjct: 54  DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 113

Query: 586 QAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
             P   +  E  V + +        ++    +        T  + K++   + R   +  
Sbjct: 114 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLR 173

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------GFTENYDVSIPP 696
            +    SD    QN    +     E S  +     EN +                    P
Sbjct: 174 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 233

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723
              P            ++ +    +RK
Sbjct: 234 SEKPTSGKDVEGKPQTMRSSSTNPKRK 260


>gi|291227621|ref|XP_002733781.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 1102

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 5/147 (3%)

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                 D +  + ++  +    ++           +  +     + STG  +++     R
Sbjct: 834 SADTKVDGKQSTAERKTKSSIPEKKRKASTAERKRKASKAERKRKASTGERKRKASTAER 893

Query: 638 RRPAT--DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           +R A+  +      VS+     +  +          +   +           E    +  
Sbjct: 894 KRKASTAERKTKASVSERQMKASTAERKRKASTTKRERKANTSERKRKSSTAEKNKKAST 953

Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRR 722
             S  +  +S S   P   K    KRR
Sbjct: 954 AKSKRKASTSESKRKPSRAK---RKRR 977



 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 10/125 (8%)

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRR----RRRRPATDHHDAG------VVSDVSSIQN 658
           S   +       +E  T      ++R+     R+R A+                 S+ + 
Sbjct: 834 SADTKVDGKQSTAERKTKSSIPEKKRKASTAERKRKASKAERKRKASTGERKRKASTAER 893

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               S       + ++   +  + A    +         +        SS+    KK   
Sbjct: 894 KRKASTAERKTKASVSERQMKASTAERKRKASTTKRERKANTSERKRKSSTAEKNKKAST 953

Query: 719 WKRRK 723
            K ++
Sbjct: 954 AKSKR 958



 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 1/117 (0%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE-ST 625
            K     +            +  S  K        E       +E  +         + ST
Sbjct: 903  KTKASVSERQMKASTAERKRKASTTKRERKANTSERKRKSSTAEKNKKASTAKSKRKAST 962

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
               +++  R +R+R  +        S    I               DIT  N   N 
Sbjct: 963  SESKRKPSRAKRKRRVSTAERKRKASTAEEISTKRSRGNGAITSSKDITVTNERFND 1019


>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
           aphrophilus NJ8700]
          Length = 709

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 17/129 (13%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDY 61
           ID       ++  +  N V+++    E    +   G IY  KVTR+     A   AFV  
Sbjct: 586 IDIDDDGTVKIAAVDKNAVQDVMARIEDITAEVEAGAIYKGKVTRL-----ADFGAFVSI 640

Query: 62  GGNRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            GN+ G +   +I         DY Q+       +++     +              V  
Sbjct: 641 VGNKEGLVHISQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKELAPKEEAVQQ 700

Query: 115 PNDHSLEEV 123
            +D  +E+ 
Sbjct: 701 SSDDVVEQE 709


>gi|171846923|gb|AAI61463.1| Unknown (protein for IMAGE:7534822) [Xenopus (Silurana) tropicalis]
          Length = 854

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 68/226 (30%), Gaps = 2/226 (0%)

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
             I+S+        +   +  ++  + +  +    +++ Y  ++     ++ EA    + 
Sbjct: 631 CDIKSEPVECSEEAKLSGDCPMETKSESCEIDYDDNMMEYKNSEGFNEDIKTEALLNETA 690

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           N V   +L +     E  S    + N        +       + +     + L    KSE
Sbjct: 691 NDVKSGDLQEDSKENENQSKSSKVDNKLEMRQKLNTPKQKQNDGQPETPRQKLEG--KSE 748

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
           +++   +            K    R++    TD           + +   ++  +   + 
Sbjct: 749 TVKQKVEVKSETSKQKAEGKSETIRQKSEGKTDTPKQKTEGHPETPKQKSENKPETPKQK 808

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           ++       +            S     TP+ +S +    P  KK 
Sbjct: 809 NEGKPETPKQKSDSRPETPKQKSESRPDTPKQKSDSRPDTPKKKKK 854


>gi|116194582|ref|XP_001223103.1| predicted protein [Chaetomium globosum CBS 148.51]
 gi|88179802|gb|EAQ87270.1| predicted protein [Chaetomium globosum CBS 148.51]
          Length = 1284

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/152 (7%), Positives = 30/152 (19%), Gaps = 2/152 (1%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                         +  P+              +             ++        +   
Sbjct: 880  PSNTPTANDHTGPENPPLNHPSAEPTPANPVPRPAKRSYTRRKAANEDGEEGERAPKRSY 939

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
              +     + + G    +R   RR+    D  +    ++  + +   +   D   EP   
Sbjct: 940  TRRKPANEDGAEGERAPKRSYTRRKPANEDGEEGEDAANKRAPRKKREPKLDENGEPIKR 999

Query: 674  TNHNLLENGAHGF--TENYDVSIPPVSTPEME 703
                    G +          S         E
Sbjct: 1000 QKSRPRRGGPNFSCDGTKKMRSTEGEEMTRAE 1031


>gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis
           str. McKiel]
 gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis
           str. McKiel]
          Length = 747

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTD 99
           G I+   VT++  S   AF++Y GN+ GF+   EI                +E     + 
Sbjct: 623 GEIFNGTVTKILDS--GAFINYLGNKDGFVHISEIS---------------EERIDTVSS 665

Query: 100 SEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPED 159
                D V    +   N    +     A+  +        ++ N+   N E V+  S + 
Sbjct: 666 VIKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSLNNPKPQNSINNAKENSEHVRCDSIKK 725

Query: 160 VPKKFKRQYCIQEVIKNRQIL 180
                       E I  R+  
Sbjct: 726 RAWNEDNNAETAEFITERKYF 746


>gi|148228559|ref|NP_001082528.1| otogelin [Xenopus laevis]
 gi|49903364|gb|AAH76719.1| LOC398539 protein [Xenopus laevis]
          Length = 2414

 Score = 49.6 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 65/246 (26%), Gaps = 24/246 (9%)

Query: 478 ESTTKVCTYCKGA-GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536
           ++    C  C+   G I   +  A  I +                  ++D ++Y  +   
Sbjct: 36  DTIKYDCQICECTNGRITDCARDANCIFK-----------KVATPEQNTDAIVY-DDDDP 83

Query: 537 ATIVEYEARFGVSINVVIG--IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
             I   E++  V          +     +                    +  +    K+ 
Sbjct: 84  NIIESSESKGNVRAKRAASGGHKKNPSAY-----ETNNKFKPNQSNRNDNDDSSKEHKDS 138

Query: 595 ECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                 +    + K  S E+        E++  +    R+ +     + +  +       
Sbjct: 139 NKGKGQKINNVLSKDSSEENASKEKWSHEKNDKMKTNERKGKDHNDSSKESKEKNHEKRQ 198

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           ++    + DS +     S     +   N     T     +    S+ E + ++       
Sbjct: 199 NNKNGWLKDSSEENDSASKEKKDHDKNN--KVRTNQNKGNDHDHSSKESKENSHEK-GEK 255

Query: 714 KKTRWW 719
            K RW 
Sbjct: 256 SKKRWQ 261


>gi|289668276|ref|ZP_06489351.1| ribonuclease G [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 70

 Score = 49.2 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%)

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
           +   I R +   + Q+ A  ++V   S VV  +  ++ A + E E   G SI      + 
Sbjct: 1   MTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKSIRFQSDDQY 60

Query: 559 ADKLFYI 565
             + F +
Sbjct: 61  LQEQFDV 67


>gi|115383860|ref|XP_001208477.1| ATP-dependent protease La [Aspergillus terreus NIH2624]
 gi|114196169|gb|EAU37869.1| ATP-dependent protease La [Aspergillus terreus NIH2624]
          Length = 1119

 Score = 49.2 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 40/155 (25%), Gaps = 6/155 (3%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             LA   + +     V   V    ++       S   +   + + E   P  + E  E  
Sbjct: 24  PSLAAPRYNV-----VARSVLVPSRLSRSLPPVSRPFSSSSIRRREKPPPGDEKEDPEQK 78

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
                 EE         RR+     +         +  S      + S     + +   +
Sbjct: 79  DQKEEVEEKDAERPSEPRRK-PIEQSGKQGSPDSGTPTSGFARRKERSAGEKEQRALEED 137

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
                N A G     +  IPP   P     + S  
Sbjct: 138 SKKENNAAEGKEGKANNDIPPSPIPVSGGGSDSKP 172


>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 742

 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDY 61
           ID       ++  +  N V+++    E    +   G IY  KVTR+     A   AFV  
Sbjct: 619 IDIDDDGTVKIAAVDKNAVQDVMARIEDITAEVEAGAIYKGKVTRL-----ADFGAFVSI 673

Query: 62  GGNRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            GN+ G +   +I         DY Q+       +++     +              V  
Sbjct: 674 VGNKEGLVHISQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKELAPKQDTVQE 733

Query: 115 PNDHSLEEV 123
             D  +E+ 
Sbjct: 734 SFDDVIEQE 742


>gi|295665931|ref|XP_002793516.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01]
 gi|226277810|gb|EEH33376.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01]
          Length = 662

 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 39/125 (31%)

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
             ++   +P+    +   + +N+    +      R+RRR      T       V   +  
Sbjct: 29  ADKESVPVPVAPLPASTPVPENVAPATAADEGPVRKRRRVDATTETKPPLPSSVKKETRS 88

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +N  D       E    T H   EN     +    VS PPVS            PI  ++
Sbjct: 89  ENTRDVVVRERQEDGKSTYHLYRENAQTLRSVTKAVSPPPVSRRSTSEVTQGKTPISSRS 148

Query: 717 RWWKR 721
              K 
Sbjct: 149 ETVKP 153


>gi|194381954|dbj|BAG64346.1| unnamed protein product [Homo sapiens]
          Length = 660

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 43/190 (22%), Gaps = 24/190 (12%)

Query: 556 IELADKLFYIEK-----------------GSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
            +L  +   I +                         +          AP    +     
Sbjct: 460 PQLHPQQMIISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTP 519

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVS 654
            +    P+P S         + ++E+     ++ +R+R       P       G V    
Sbjct: 520 AERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSR 579

Query: 655 SIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
             +       +    EP      +             + + S P      +     S  P
Sbjct: 580 KPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKP 639

Query: 712 IVKKTRWWKR 721
             ++    + 
Sbjct: 640 KRRRAADVEP 649



 Score = 45.7 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 514 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 573

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 574 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 633

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 634 EPSRKPKRRRAADVEPSLPEPKR 656



 Score = 44.2 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 39/179 (21%), Gaps = 24/179 (13%)

Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
               L       E+                + T  +       PS D N++         
Sbjct: 489 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 545

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
              K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 546 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 599

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--PIVKKTR 717
                             +E  +          + P   P+   +       P  K+ R
Sbjct: 600 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKRRR 658


>gi|281604178|ref|NP_001094131.1| Ctr9, Paf1/RNA polymerase II complex component, homolog [Rattus
            norvegicus]
 gi|293344329|ref|XP_001077817.2| PREDICTED: Ctr9, Paf1/RNA polymerase II complex component, homolog
            (S. cerevisiae) [Rattus norvegicus]
 gi|293356139|ref|XP_238127.5| PREDICTED: Ctr9, Paf1/RNA polymerase II complex component, homolog
            [Rattus norvegicus]
 gi|149068293|gb|EDM17845.1| SH2 domain binding protein 1 (tetratricopeptide repeat containing),
            isoform CRA_a [Rattus norvegicus]
          Length = 1173

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 34/143 (23%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +K               SD       +       D+                   S+E +
Sbjct: 1024 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 1083

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +  R+RRR     +D+  A      S      +DS  +              +    
Sbjct: 1084 DSDQPSRKRRRSGSEQSDNESAQSGRSPSGGSENENDSRPVSPSAESDHESEQGSDNEGS 1143

Query: 686  FTENYDVSIPPVSTPEMESSNSS 708
               + + S P  S  E     S 
Sbjct: 1144 GQGSGNESEPEGSNNEASDRGSE 1166


>gi|221485206|gb|EEE23496.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2209

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 43/169 (25%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
           V    L D    I     ++A         +     + D  +          P  KS S 
Sbjct: 243 VAKSGLEDDAGRIPVVRSLEASPRQTKAKETSEIEKAPDDALGKAAGRAQAEPAEKSGSE 302

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                  V  E         +R+R+R    +    G  +   S +       D+  EP  
Sbjct: 303 TKENALTVQNEREFDEANGAKRKRKRTQEKEGASGGTRTAGESPRQGRAADGDVPEEPEQ 362

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  +  +   T      +   +  E         P +++     R
Sbjct: 363 RRRQKRGKANSDKPTRLKKPQLQRSTEKERTHRRDQRRPALRERDDASR 411


>gi|5114120|gb|AAD40226.1|AF111101_1 zinc finger protein Zim1 [Mus musculus]
          Length = 579

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 54/207 (26%), Gaps = 9/207 (4%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV +Y   ++   +   +      + +     L    +YI K   +  L         ++
Sbjct: 54  DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 113

Query: 586 QAPSYDKNIECVWQDEALLPIP-------KSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
             P   +  E                   K+E  +     I S E      + R  +  R
Sbjct: 114 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKITSLEKQKAADQGRGSQSLR 173

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS--IPP 696
              T   D     +     +           P +  N + +   + G T     +    P
Sbjct: 174 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 233

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723
              P            ++ +    +RK
Sbjct: 234 SEKPTSGKDVEGKPQTMRSSSTNPKRK 260


>gi|323452037|gb|EGB07912.1| hypothetical protein AURANDRAFT_71714 [Aureococcus anophagefferens]
          Length = 383

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 6/159 (3%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE---DIQDNIVS 621
           +++       V       +     S  +              P++ +     D +D +  
Sbjct: 139 VQREVQQLREVARNATSKALRAESSAKRATSRRPATRGAAMTPENPTAPGWLDAEDALSP 198

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LL 679
           E     +R+R+ R    RPA      G +S  +    + + S         +        
Sbjct: 199 EARAARLRERKPREVAARPAA-TKPPGALSPEARAARLREQSLRTRDSQIRVYKSAAPRR 257

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                G  +    +    + P +  S  ++ P  KKTRW
Sbjct: 258 PAAITGTFQRGMTAEEKRTPPPVLESRHAAPPAAKKTRW 296


>gi|254565591|ref|XP_002489906.1| Subunit of the THO complex [Pichia pastoris GS115]
 gi|238029702|emb|CAY67625.1| Subunit of the THO complex [Pichia pastoris GS115]
 gi|328350317|emb|CCA36717.1| Uncharacterized protein C1D4.14 [Pichia pastoris CBS 7435]
          Length = 1636

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 75/274 (27%), Gaps = 40/274 (14%)

Query: 451  RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510
            + +  + + +    ++ S  + ++   E   +     +G    +          R+ EE 
Sbjct: 1287 KIKTTIESPTTLNSVDFSDNKKQA---EKQYENGKSKEGTKKAKLPEGPKKEHKRTKEEK 1343

Query: 511  LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
              +                     +R  + + E +     ++                  
Sbjct: 1344 RERQKEK-----------------ERVRMKDKEKQQEKEGDIEKD------------TDK 1374

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            V    N            + +K +E V  +         E  +  Q+   S E+      
Sbjct: 1375 VTEKENKKESPKEKENEKAPEKRVEEVSSE-----GKGKEIKDREQERPRSSENDLKED- 1428

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
              +RR   +  T  H     S+V +      +  +  ++          + G    +   
Sbjct: 1429 SSKRRVDTKSDTPPHSNQDNSEVKAPGKSTRELLEARLKQEKEFARQKNQTGGKNNSRPP 1488

Query: 691  DVSIPPVSTPEM--ESSNSSSDPIVKKTRWWKRR 722
              S     + ++  ES N     + K+   + RR
Sbjct: 1489 SRSEKEAESTDVRTESRNDFRGDVKKEIPRFPRR 1522



 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 49/194 (25%), Gaps = 3/194 (1%)

Query: 530  YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
            Y ++ K+   +  + R    I +    +  ++   IE              +        
Sbjct: 1229 YAMDLKQKQFLLLKKRAINRIRIEKRRKAEEEARKIEMEKNKAPNAYGLASLPVRKVVKI 1288

Query: 590  YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                      +       K ++ +  ++    E +         ++  +R   +  +   
Sbjct: 1289 KTTIESPTTLNSVDFSDNKKQAEKQYENGKSKEGTKKAKLPEGPKKEHKRTKEEKRERQK 1348

Query: 650  VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
              +   +++             D       EN      E  +          +E  +S  
Sbjct: 1349 EKERVRMKDKEKQQEKEGDIEKDTDKVTEKENKKESPKEKEN---EKAPEKRVEEVSSEG 1405

Query: 710  DPIVKKTRWWKRRK 723
                 K R  +R +
Sbjct: 1406 KGKEIKDREQERPR 1419


>gi|311273590|ref|XP_003133939.1| PREDICTED: LOW QUALITY PROTEIN: nipped-B-like protein-like [Sus
           scrofa]
          Length = 2804

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/175 (7%), Positives = 47/175 (26%), Gaps = 3/175 (1%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E++    I +       ++   IE     ++      +  +       + N +   + E 
Sbjct: 637 ESKLDTKIEIQTEEPKQNESRTIE-SKQNESTTAEPKQNENRLSDTKPNDNKQNNGRSET 695

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
               P++   +        ++ +    +  +++   RP T            + +   + 
Sbjct: 696 AKSRPETPKQKGESRPETPKQKSEGRPETPKQKGDGRPETPKQKGE--GRPETPKQKNEG 753

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +      +        +       +         +P ++S  + +       R
Sbjct: 754 RPETPKHRHENRRDPGKPSTEKKPEMSKHKQDIKSDSPRLKSERAEALKQRPDGR 808


>gi|306480366|emb|CBV36587.1| CagX protein [Helicobacter pylori]
          Length = 521

 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 55/212 (25%), Gaps = 2/212 (0%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE--LADKLFYIEKGSPV 571
                I + T  D V  +  +K  TI      F    ++V                    
Sbjct: 49  GDEKPITIWTSLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFE 108

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +  VN         +     K I      + L    K+   E        +       KR
Sbjct: 109 KEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKR 168

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           +  R R R   ++    + +  +   N            +++     LE+       N  
Sbjct: 169 KEERARNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANAL 228

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             I  ++  + E +           +  K +K
Sbjct: 229 KQIEELNKKQAEETIKQRAKDKISIKTDKPQK 260


>gi|297587671|ref|ZP_06946315.1| ribonuclease G [Finegoldia magna ATCC 53516]
 gi|297574360|gb|EFH93080.1| ribonuclease G [Finegoldia magna ATCC 53516]
          Length = 334

 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 121/341 (35%), Gaps = 34/341 (9%)

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
              ++E  +I  A         D      +     F       + +K    +LVQ++KE 
Sbjct: 22  GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTKFTKDLKPSDEILVQMIKES 81

Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248
            G+K    TT +++                         + K   +     +       I
Sbjct: 82  IGDKYPKFTTKITIETENLKYT----------NSDKLTFEGKQKYKDIDDFKQKYTFTGI 131

Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL-IKRAIRDLYCKDI 307
           +                E   +   + +E  +N +   L Y E         + LY K+ 
Sbjct: 132 V---------------GEDFFKQEKSQQEKEMNFIVNKLHYIETEKKFLPIPKLLYKKNP 176

Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367
            + I+  E       +   +       +  ++++ +   + + I   +   +   + L +
Sbjct: 177 VDKIIQEEDVDYLITNDRIVYRQYKGILNVKFDENYDYNYDNLISRDIIDKNSEIIKLDN 236

Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427
              ++I +TEA+  +DVNS +   +        + N +A ++I + + L+ + G+++VD 
Sbjct: 237 NAEIVIQKTEAMWVVDVNSSKMILKEDYF---HELNTKALKKIHQMIYLKKMVGMVIVDC 293

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468
           +    +++N+ +   +K+   +    +     SN  LLE +
Sbjct: 294 VR---ERDNKKLSDFIKDEFCEPN--INFHGFSNLNLLEFT 329



 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 79/270 (29%), Gaps = 22/270 (8%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL----------PFLEIHPDYYQIPFSD---- 85
           GNIY+AK+T+ +  L A F++Y   + GFL          P  EI     +    D    
Sbjct: 29  GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTKFTKDLKPSDEILVQMIKESIGDKYPK 88

Query: 86  ---RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
              +  +  E+       +   +                    +     + E+       
Sbjct: 89  FTTKITIETENLKYTNSDKLTFEGKQKYKDIDDFKQKYTFTGIVGEDFFKQEKSQQEKEM 148

Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
           N +V+ +  ++         K   +    + I   + +   I  +    +       +  
Sbjct: 149 NFIVNKLHYIETEKKFLPIPKLLYKKNPVDKIIQEEDVDYLITNDRIVYRQYKGILNVKF 208

Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
              Y     + +    ISR I +        +    + +     + +    +S+  ++  
Sbjct: 209 DENY-----DYNYDNLISRDIIDKNSEIIKLDNNAEIVIQKTEAMWVVDVNSSKMILKED 263

Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEG 292
              E   +    + ++        +V  + 
Sbjct: 264 YFHELNTKALKKIHQMIYLKKMVGMVIVDC 293


>gi|221488128|gb|EEE26342.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2869

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 34/137 (24%), Gaps = 9/137 (6%)

Query: 595  ECVWQDEALLPIPKSESLEDIQDNIVSEEST-GVIRKRRRRRRRRRPATDHHDAGVVSDV 653
            E   ++E         + E        +E   G  ++ R     R P+  + + G     
Sbjct: 1550 EERDENEPQEERQDDRNPEKRTHRTSEDEEMLGTGKQVRPAENSRSPSVRYGETGATRKD 1609

Query: 654  SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              ++       +                 +   + +  VS       +   +  +     
Sbjct: 1610 GKVEEKKPRDEEKEERNERKDAKRRAPEASEPASISSSVSPEKEGDRKEAHAEGNKAKAP 1669

Query: 714  KKT--------RWWKRR 722
            ++          WW  R
Sbjct: 1670 RRKAENLSVVESWWDER 1686


>gi|322796271|gb|EFZ18847.1| hypothetical protein SINV_80216 [Solenopsis invicta]
          Length = 1022

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 7/213 (3%)

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
               + +  E    +          H      L  +++    + E             + 
Sbjct: 784 HGDRMEQLAEGEARRCQDLLSQAQYHVARARRLDEEEKMLRRKQEEERQAFKMRQTEEQR 843

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             +     +    + L      V     A  +D+       ++      ++ + + + D+
Sbjct: 844 KLEEMR--RQKEEEMLQKRQEYVEKTKNALVFDEMPS----EKPGKKGKRTRTDQYVSDS 897

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHN 677
             S+   G     + R+R+R+P+ +  +          ++    +S     +P       
Sbjct: 898 GGSDRDEGREEVPKERKRKRKPSGETKEKRSKGKGRRRKDAGSGNSGSDSDQPKRKRVKK 957

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
                         V        + + + S+S+
Sbjct: 958 NAGTKKEKSARKGAVETLKGKLVKSKETISTSE 990


>gi|261327419|emb|CBH10394.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
           gambiense DAL972]
          Length = 766

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/167 (7%), Positives = 35/167 (20%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
             E         +            +   +        + E   Q          +  + 
Sbjct: 276 ESEPQQPDDNETEAQQPDDKETEAQQPDDNETEAQQPDDNESEPQQPDDKETKPQQLDDK 335

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
             +    +++    ++        +   D+       D +  +    D  +   +  D  
Sbjct: 336 ETEAQQPDDNESEPQQPDDNETEAQQPDDNESEPQQPDDNESEPQQPDDNETEAQQPDDN 395

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                +                      ++   +  P  K+T   KR
Sbjct: 396 ESEPQQPDDKETEAQQPDDNEAEPQQPDDNETEAQQPDDKETELQKR 442


>gi|195427177|ref|XP_002061655.1| GK17071 [Drosophila willistoni]
 gi|194157740|gb|EDW72641.1| GK17071 [Drosophila willistoni]
          Length = 1358

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 47/160 (29%), Gaps = 5/160 (3%)

Query: 566 EKGSPVQALVNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           E+    +   +            +  S ++      +  ++    +S+  +  ++   S+
Sbjct: 745 ERQRSKERQRSVEKSNVRSVNKEREKSKERQRSRDGKQRSVDRTARSKERQRSREKQRSK 804

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +  G     R+R + R+ +     +         Q   D S D +       +++  +  
Sbjct: 805 DRQGRQSVERQRSKDRQRSKQRQPSRSAGSKERNQQRRDRSKDRHRRDRRSNSNSRRQRS 864

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               +           +    + + +     K     KRR
Sbjct: 865 PSNSSSRKRND--DRKSTRATTPSPTRSRKQKSRSPVKRR 902



 Score = 45.3 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 36/144 (25%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    Q             +     +  +   + +   P   + S E  Q      +   
Sbjct: 790 RSKERQRSREKQRSKDRQGRQSVERQRSKDRQRSKQRQPSRSAGSKERNQQRRDRSKDRH 849

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +R     RR+ +  +  +   +D          S     +    +      +     
Sbjct: 850 RRDRRSNSNSRRQRSPSNSSSRKRNDDRKSTRATTPSPTRSRKQKSRSPVKRRSHSPEEV 909

Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710
                 ++ P   P   + ++ +D
Sbjct: 910 AAPKKTTVAPAFNPFKAAEDTVND 933



 Score = 41.1 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 39/160 (24%), Gaps = 6/160 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             Q   +   +     +                     + +  +  ++   S E      
Sbjct: 668 ESQRQGDKQQQPQRSRRDSRSRSRRPKSVARTPPRRESQKKDTQKSRERPRSSERQRSKD 727

Query: 630 KRRRRRR----RRRPATDHHDAGVVSDVSSIQNVI--DDSFDMYMEPSDITNHNLLENGA 683
           ++R R R     R  + +   +          NV   +   +   E     +        
Sbjct: 728 RQRSRERHISKDRHRSKERQRSKERQRSVEKSNVRSVNKEREKSKERQRSRDGKQRSVDR 787

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              ++    S     + + +   S      K  +  K+R+
Sbjct: 788 TARSKERQRSREKQRSKDRQGRQSVERQRSKDRQRSKQRQ 827


>gi|309355528|emb|CAS00932.1| hypothetical protein CBG_26851 [Caenorhabditis briggsae AF16]
          Length = 1306

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 40/156 (25%), Gaps = 3/156 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G P    V    +    + + S     +   +    L + K+E+ E        E     
Sbjct: 18  GRPRIRAVKDKAREVGATTSTSSTSTTKPSQKRR--LAMKKAETAEKKLQRKDEESEEIT 75

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            ++RR    R+R A            +S                           +    
Sbjct: 76  AKRRRLDAIRKRKARVEETEEEHKKRTSSNKERTSRARSEETEDQYRRRKSSNRVSTLRA 135

Query: 688 ENYDVSIPPVSTPEMESSNS-SSDPIVKKTRWWKRR 722
            + +     +     ++  +  +     +T   +RR
Sbjct: 136 RSEETEGERIRRMLADAERTFKARSEETETDTLRRR 171


>gi|239947698|ref|ZP_04699451.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921974|gb|EER21998.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 748

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 31/175 (17%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   EI                     ++   E V+  +  GD+        +       
Sbjct: 650 VHISEI---------------------SEERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             + T+++   +      +     +   PE      K++   ++       ++ +
Sbjct: 689 TIKNTDKDKSSNNPKPKNNVNNAKENSEPEQRRDSSKKRAWNEDNNTETAEVITE 743


>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 518

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           +++A + + E   G +I V+                         + +     AP  ++N
Sbjct: 352 EEKAYVKDIEKLTGKTIQVIGD---------------------HPYPMEVFEIAPKEERN 390

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                         +++      D+  + +S      RR    RR       D+   +D 
Sbjct: 391 SRQAKGAGKGAGSRRAKDSRRDTDSKRATDSRRAKDSRRATDSRRD-----TDSKRATDS 445

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
               +    +       S     +  +  A         S P  + P     + +  P+ 
Sbjct: 446 RWAADSRQATDSRTAADSRRATASRKQTSAGKPALTQSQSSPQKTRP-SGKRSHAPAPLP 504

Query: 714 KKT 716
           +++
Sbjct: 505 RRS 507


>gi|325117073|emb|CBZ52625.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
          Length = 1056

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 39/166 (23%), Gaps = 8/166 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP-------KSESLEDIQDN 618
           + G              +   A +     + V + E             K E     + +
Sbjct: 50  DSGKDRHRHERREKDRKASRDATAATNRGKDVDEAEKSEKKKKLKDEAHKREKRGPERPS 109

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              +       +R +R+  +R   D     V  D   +    D   +   +        +
Sbjct: 110 ETQDTDGHEKDRRGKRKEAKREGQDASARPVTEDGEDVHMEEDKRKEKDDDQGRKAKKEI 169

Query: 679 LENGAHGFTENY-DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              G     +   D      S       +       K +    RR+
Sbjct: 170 RREGDRRRAKEKDDKHSSSRSEKRKRGRSPERSREKKSSGGGDRRR 215



 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 1/148 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E        V    +     +    +K+ +   + +  +           +D+  S   +
Sbjct: 131 EGQDASARPVTEDGEDVHMEEDKRKEKDDDQGRKAKKEIRREGDRRRAKEKDDKHSSSRS 190

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++ R   R R   +         +          +    + PS     +    G+  
Sbjct: 191 EKRKRGRSPERSREKKSSGGGDRRRKEKDGR-KGSASASRPSLSPSLTRPSSAPSRGSSL 249

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIV 713
            TE  + + P    P  ++  +      
Sbjct: 250 ATEAPEAARPGARRPASQTGETPEKREK 277


>gi|302830023|ref|XP_002946578.1| heat shock protein Hsp70G [Volvox carteri f. nagariensis]
 gi|300268324|gb|EFJ52505.1| heat shock protein Hsp70G [Volvox carteri f. nagariensis]
          Length = 1103

 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 36/152 (23%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                 N     G+ +   +          +          S E         E     ++
Sbjct: 948  ASGSENADAAGGAGAGEGATGDAPGDAKAEPEQKRAGGQGSEEGTAGAAGGAEDQEATKR 1007

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
              ++  +    T        +D  + +   D          +       +  +    +  
Sbjct: 1008 EAKKAGKAEGETKEAKKAGKADGDTKEAKKDGKTKKEQPKKNSKGKKEPKKDSKATEDTK 1067

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              S     T +  S+  S     KK+  W +R
Sbjct: 1068 KESKAKPDTRKESSTKGSEKKDQKKSWSWNKR 1099


>gi|156093421|ref|XP_001612750.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801624|gb|EDL43023.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 5892

 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 3/100 (3%)

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
              G  R  R  +R  +  +           S   +  D   D   +    +  +   +  
Sbjct: 5184 DAGRRRGARASKRDSKRDSKGDSKRDSKRDSKRDSKRDSKRDSKRDSKRDSKRDSKRDSK 5243

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                          S     + +S +D    K    KRR+
Sbjct: 5244 SRSANRSANRSANRSANRSTNRSSQNDT---KKGGRKRRR 5280


>gi|118103708|ref|XP_425012.2| PREDICTED: similar to delangin [Gallus gallus]
          Length = 2786

 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 49/207 (23%), Gaps = 1/207 (0%)

Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
             E   + +   +            +  ++      E+++  +  V    ++      +E
Sbjct: 598 HPEIFRKKSDFEVQKTDIQQNENRQMEFQQNESRRLESKYNDNKQVEAKYDIKHDSRQME 657

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
                     +        +    +       Q+    P    +  E   +    +    
Sbjct: 658 MKQNENRQAESKQNESRQMEMKQNEGKQNNGKQEIRQRPETPKQKSEGRPETPKQKSEGR 717

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               + R   RR  +    +  +           D S       SD       +  +   
Sbjct: 718 PETPKHRHDNRRDSSKPLSEKKIELSRHKPDVKSDTSKVKSDSRSDPVKQRP-DGRSVSD 776

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713
           T+  D       + + ES     DP  
Sbjct: 777 TQRRDHDSLKQRSEDRESERYKGDPSK 803


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 6/159 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEESTGV 627
              +   N         Q  S       V  +        +   +  ++    +EE  G 
Sbjct: 409 KDKKQGGNRQRNRRPAVQNQSTADENSAVGLERKTNSRENAAPQKKQENRPTAAEEKGGN 468

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +  R+ + R +           SD     +          +           N      
Sbjct: 469 KKNNRQGKGRSQERQPKAANESRSDRKPASSKNAAGNSTSQQARKQNGKRKKRNNRQRVP 528

Query: 688 ENYDVSIP-----PVSTPEMESSNSSSDPIVKKTRWWKR 721
           E   V            P +   +S    ++KK   W R
Sbjct: 529 EEKAVRRSTKYDIREDFPAISKGDSGLKSLIKKPLKWLR 567



 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 29/246 (11%)

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           G  +I      +        + + ++ +  I V   +D+V   ++     I +       
Sbjct: 266 GRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGID-----IDDIAMVINY 320

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD------SQAPSYDKNIECVWQDEA 602
            +       +      I + +           V  D            DK +E +   E 
Sbjct: 321 DVPHDAEDYVH----RIGRTARADRDGKAITFVNVDDIYYFKQIESFLDKEVEKIPLPEE 376

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRR---------RRRRRRPATDHH----DAGV 649
           L   P+ +     +    ++      R ++          R+R RRPA  +     +   
Sbjct: 377 LGEGPEYKGNGKPKRGGNAKTRRRKDRDQQSHKDKKQGGNRQRNRRPAVQNQSTADENSA 436

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
           V       +  + +     E           N  +        S         ES +   
Sbjct: 437 VGLERKTNSRENAAPQKKQENRPTAAEEKGGNKKNNRQGKG-RSQERQPKAANESRSDRK 495

Query: 710 DPIVKK 715
               K 
Sbjct: 496 PASSKN 501


>gi|195380573|ref|XP_002049045.1| GJ21372 [Drosophila virilis]
 gi|194143842|gb|EDW60238.1| GJ21372 [Drosophila virilis]
          Length = 1254

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/353 (10%), Positives = 104/353 (29%), Gaps = 16/353 (4%)

Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432
           +  ++      +N+     E      A+    +  +E      ++++  L+   F    +
Sbjct: 659 VESSKRCTEAILNTAHIAMEQEHYTEAIDIYKQCLKEFLPTNSVKEMH-LLAKAFYQTGQ 717

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
            +  + + +K +    +D     +  + N G++   +Q IR +  +  T      +    
Sbjct: 718 FEEAKKLLQKARHVAPQD-----LMILYNLGIV--IKQDIRQTYGKQRTDRTELQRAEQE 770

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           ++   S+   +    E     Y   N      ++V+    N   + + E E +      V
Sbjct: 771 LKMAQSIFQYLGDKEESLQTAYKQANKCSKLLANVMEDFKNL--SELDEVEKKTEERQKV 828

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK---NIECVWQDEALLPIPKS 609
                 A +   I +        +         Q    ++         +D +     K 
Sbjct: 829 KRDKAKAKE---ISRKKDYSKKRDQKETETEAPQKSEKEEPMCKDRYRKKDPSKKHQEKI 885

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
            S ++               +++   ++R+   D  +     + S  +     S +  + 
Sbjct: 886 SSADEQAKVEHENSICTEGPRKKEHLKKRQEMADEQEKSKNGEKSRKKEYPKQSQENPIY 945

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +++    L +  +   + +           E          I +     K R
Sbjct: 946 YTELETDELEKPLSDVLSTHSSKKEHSKKRKEKAYETGDRQKIERDESLSKER 998


>gi|302412737|ref|XP_003004201.1| predicted protein [Verticillium albo-atrum VaMs.102]
 gi|261356777|gb|EEY19205.1| predicted protein [Verticillium albo-atrum VaMs.102]
          Length = 534

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 41/162 (25%), Gaps = 12/162 (7%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE------SLEDIQDNIV 620
           + +P              ++    D   +    D        +          D     +
Sbjct: 68  QSAPAPESQPRRRGRPPGAKKQEPDTGTQPSQTDGPAAATVTASQVHVTAEPSDGPQETI 127

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
           ++E+    R+ R+R+R R    +                          P          
Sbjct: 128 NDETPKPGRQVRKRKRGRPSLAETAAETQPQQEEEPPEPQKTQKRKRGRPPAEEKEQAQG 187

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +   T+       P  +   E+S   +DP  KK R   RR
Sbjct: 188 EPSEDRTQ------QPPPSTTAEASAIEADPPAKKPRGRPRR 223



 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 10/167 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +        +              ++            P  +    + I  + ++ E   
Sbjct: 10  RKRAALVASDASQPEPPALPQDVNEELSFEGQVQSTPRPRGRPPKNKPIAQSGLTPEPQS 69

Query: 627 -----VIRKRRRRR---RRRRPATDHHDAGVVSDVSS--IQNVIDDSFDMYMEPSDITNH 676
                   +RR R    +++ P T    +      ++    + +  + +    P +  N 
Sbjct: 70  APAPESQPRRRGRPPGAKKQEPDTGTQPSQTDGPAAATVTASQVHVTAEPSDGPQETIND 129

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              + G               +  E +       P  +KT+  KR +
Sbjct: 130 ETPKPGRQVRKRKRGRPSLAETAAETQPQQEEEPPEPQKTQKRKRGR 176


>gi|307178712|gb|EFN67326.1| RNA polymerase-associated protein CTR9-like protein [Camponotus
            floridanus]
          Length = 1264

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 55/219 (25%), Gaps = 15/219 (6%)

Query: 498  SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
            +    + +  E    +          H      L  +++    + E             +
Sbjct: 797  THGDRMEQLAEGEARRCQDLLSQAQYHVARARRLDEEEKMLRRKQEEERQAFKMRQTEEQ 856

Query: 558  LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
               +    +K   +        +   ++       + +            +  + + I D
Sbjct: 857  RKLEEMRRQKEEEMLQKRQEYVEKTKNALVFGEMPSEK------PGRKGRRVRTDQYISD 910

Query: 618  NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID-DSFDMYMEPSDITNH 676
            +  S+   G     + RRR+R+ +T+  +          +     +S     +P      
Sbjct: 911  SGGSDREEGREEAPKERRRKRKASTEMKERKSRGKGKRRKEAESGNSGSESDQPKRKRGK 970

Query: 677  NLLENGAHGFTEN--------YDVSIPPVSTPEMESSNS 707
                      T             S   +ST E +S   
Sbjct: 971  KNTGTRKEKSTRRGAFENLKGKIKSKETISTSESDSDTG 1009


>gi|38603523|dbj|BAD02898.1| bacteriolytic enzyme [Bacillus clausii]
          Length = 1333

 Score = 48.0 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 8/170 (4%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE--- 610
            I                V+   +   +    S+    + + E    +        SE   
Sbjct: 1064 IDENDTVPHSDEANDQTVEEDDHVADENEQASETTDTENDAENEESNLPASEEAPSEEND 1123

Query: 611  -----SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                 SLE+ Q+      +     +       + P TD        +  +  +  +   D
Sbjct: 1124 STDESSLEEPQEPETDASADEQEPETDANTDEQEPETDASTDEQEPETDASADEQEPETD 1183

Query: 666  MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               +  D+      E        + D   P   T E   ++ +S+P+ ++
Sbjct: 1184 ASADEQDLAEQVAEEEHGDADGTSEDQESPVSDTAENNEADENSEPVQEE 1233


>gi|240278603|gb|EER42109.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
          Length = 1766

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 37/161 (22%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
            +       IE     +            +         + V  D              +
Sbjct: 526 PDDVTPDASIEPQENARTQEPEAPTSEEATIPDGEPVTQQDVIPDSVEPESLVEAEEPVV 585

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
            D+     ++              PAT        S   ++     +S +         N
Sbjct: 586 PDSSDEVVASKPEDDASLEPEPDTPATPEEPEAPESAADTVPETNGNSGEDPEASEPAAN 645

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             L+++         + +   V  PE   S   +DP    T
Sbjct: 646 LELVQSSTPETEVADEQTTEKVVEPETSKSVDIADPAPDST 686


>gi|226322821|ref|ZP_03798339.1| hypothetical protein COPCOM_00593 [Coprococcus comes ATCC 27758]
 gi|225208802|gb|EEG91156.1| hypothetical protein COPCOM_00593 [Coprococcus comes ATCC 27758]
          Length = 933

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 72/279 (25%), Gaps = 27/279 (9%)

Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485
           DF    +++N + +  ++ +  +       +   S  G  ++ R + + + L        
Sbjct: 86  DFGQSSKQQNRKRIRAEVGKESR-------LAEKSEAG--QLGRLKDKRADLSENRGDSR 136

Query: 486 YCKGAGYIRSQSSVALSILRSVEEYLLQYTAH------------NIIVHTHSDVVLYLLN 533
             +  G  + +    L          ++                N       +       
Sbjct: 137 RNQTGGSKKPKQKQRLKFAYEETGASVKNDKDMEKLNQMDTDGVNFRHQKQKEKAKKFSY 196

Query: 534 QKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
           ++     E +     +             K F ++ G            V     A S  
Sbjct: 197 EEARKKKEAKQHSKKAQVYQANEGESPGKKKFRLKFGEGESVKTEKASVVKKAGSATSVA 256

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--- 648
            + E    ++    +  +  LE+  + +   E     R+++R  R+R       +     
Sbjct: 257 LHREISKNEDDNAAVEGAHKLEESGEGVYRLEQRSARRRKQRASRKRSRLERQEEKQTQA 316

Query: 649 -VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +   ++  I              +   +     G 
Sbjct: 317 ATRQEQKKLKKRIQKQQIKRDYAKAKRSEQTVGTATKGT 355


>gi|62088844|dbj|BAD92869.1| PI-3-kinase-related kinase SMG-1 isoform 1homolog [Homo sapiens]
          Length = 854

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 54/258 (20%), Gaps = 21/258 (8%)

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R   SV         + +     R   SV    LR                   + +   
Sbjct: 600 RHLPSVSSLPFHPQLHPQQMIISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPS 659

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
                   I     R    +       L                 +          AP  
Sbjct: 660 APPSADDNIKTPAERLRGPLPPSADDNLKTP--------------SERQLTPLPPSAPPS 705

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHD 646
             +      +    P+P S         + ++E+     ++ +R+R       P      
Sbjct: 706 ADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRR 765

Query: 647 AGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEME 703
            G V      +       +    EP      +             + + S P      + 
Sbjct: 766 VGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVG 825

Query: 704 SSNSSSDPIVKKTRWWKR 721
               S  P  ++    + 
Sbjct: 826 DVEPSRKPKRRRAADVEP 843



 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 708 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 767

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 768 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 827

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 828 EPSRKPKRRRAADVEPSLPEPKR 850


>gi|307168125|gb|EFN61404.1| Muscle M-line assembly protein unc-89 [Camponotus floridanus]
          Length = 5829

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 52/176 (29%), Gaps = 2/176 (1%)

Query: 536  RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
            + +I   E R   +I++    +   +   I++ + V   ++    +           +  
Sbjct: 2043 KDSIKVVEKRKDSAIDISEAKKTKVEEIQIKEEAKVNPTLSKVDSIKDSKVVEKRKDSAT 2102

Query: 596  CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--VVSDV 653
             + + +           E   +     E T     +++RR + R            +++V
Sbjct: 2103 NISEAKKSKVEEIRAKEEAKANPNHRRERTLRPTYQKKRRPKSRKLKQRKKPRQIRITEV 2162

Query: 654  SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
              IQ   +D  +     +D    +         T             E +++ S  
Sbjct: 2163 EEIQTKEEDKENPNPPKADSIKDSTKNVEKRKDTATNISEANKTKVEEAQANMSRR 2218



 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 49/169 (28%), Gaps = 11/169 (6%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E+    +  V+   +    +      +  E +  + A   +   E ++        E + 
Sbjct: 1984 EELKSDEKPVSVKVESQQANLVSPKVQVKEEIQANLASPKVQAKEEVKVNPSAPKVESTK 2043

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              I+   +R+      ++     V       +  ++ +        D       ++ A  
Sbjct: 2044 DSIKVVEKRKDSAIDISEAKKTKVEEIQIKEEAKVNPTLSKVDSIKDSKVVEKRKDSATN 2103

Query: 686  FTENYDVSIPPVSTPEMESSNSS-----------SDPIVKKTRWWKRRK 723
             +E     +  +   E   +N +                 K+R  K+RK
Sbjct: 2104 ISEAKKSKVEEIRAKEEAKANPNHRRERTLRPTYQKKRRPKSRKLKQRK 2152


>gi|326668838|ref|XP_692662.4| PREDICTED: LOW QUALITY PROTEIN: membrane-associated guanylate kinase,
            WW and PDZ domain-containing protein 3 [Danio rerio]
          Length = 1439

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 6/151 (3%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            K                  +  S  ++   V   ++     + E  E  + ++   +S  
Sbjct: 1224 KDKAHSHKEKLQQSTRDSQKNRSSRQHSRSVSPQKSRRERQEVEIGETEESHLDQRKSGT 1283

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              RK+R    R+R  T   ++         + V             +      +   +  
Sbjct: 1284 DRRKKRESAVRKRNETQERESERKVKSKEDEEVQRKGQAE------LEGTQKKKKQRNIE 1337

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +N D  I P    +      S     K+ +
Sbjct: 1338 MQNGDTLISPDRKSKQTKDKGSLRDQRKENK 1368



 Score = 40.7 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 2/160 (1%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E  S    ++       + +   S       V +   L     + S +  ++      +T
Sbjct: 1129 ENSSAGDVILPDPPGSHTSNIPLSSHPTSTSVKKRTGLTDGSLNPSKDSKREKHTKTPNT 1188

Query: 626  GVIR-KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               R  ++ RR + R A +  D G      S     D +     +    T  +     + 
Sbjct: 1189 SSSRVSQQPRRIKSRSAENLLDLGDTEKSKSPSKAKDKAHSHKEKLQQSTRDSQKNRSSR 1248

Query: 685  GFTENYDVSIPPVSTPEMESSNSSSDPI-VKKTRWWKRRK 723
              + +           E+E   +    +  +K+   +R+K
Sbjct: 1249 QHSRSVSPQKSRRERQEVEIGETEESHLDQRKSGTDRRKK 1288


>gi|237837447|ref|XP_002368021.1| hypothetical protein TGME49_031200 [Toxoplasma gondii ME49]
 gi|211965685|gb|EEB00881.1| hypothetical protein TGME49_031200 [Toxoplasma gondii ME49]
          Length = 2710

 Score = 47.7 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 74/275 (26%), Gaps = 24/275 (8%)

Query: 445  ESLKKDRARVQVGAISNFGLLEMSRQ--RIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            E+  ++  R +V +      L+ +R+  R   +  E + +        G+ R ++     
Sbjct: 2274 EARTREGHRQRVESERPSDRLQGAREETRQGEAREERSDREQIEAVRRGWRREEAVKPRE 2333

Query: 503  ILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
              R   E       +  +      +      + +       E R   + +          
Sbjct: 2334 DTRGDREAAKDSCRSRKVQKTCEEE------DSEDELCARLERRQRTTDSSKSDEMATHG 2387

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                E   P            +       +  I    ++E     PK+ +  ++ D   +
Sbjct: 2388 ----ETRRPGTRREGREKAAFTVQNNAYPEAKIFSSDEEEHWTKAPKARAAREVTDLGET 2443

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
                          RRR+P                +   +D         + +     ++
Sbjct: 2444 NL-----------PRRRKPEARKEKTTRSKKTRKTRKNQEDETTETDNKDEDSKDEHSKD 2492

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                  +N D       + + +S +  S+    ++
Sbjct: 2493 ENSKDEDNKDEDNKDEDSKDEDSKDEDSEDEKPRS 2527



 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 6/151 (3%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +                 ++     + ++   ++E       +      +    S+    
Sbjct: 2324 RREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTDSSKSDEM 2383

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                  RR   RR   +   A  V + +  +  I  S +                 A   
Sbjct: 2384 ATHGETRRPGTRREGREKA-AFTVQNNAYPEAKIFSSDEEEHWTKA-----PKARAAREV 2437

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            T+  + ++P    PE     ++     +KTR
Sbjct: 2438 TDLGETNLPRRRKPEARKEKTTRSKKTRKTR 2468


>gi|332206454|ref|XP_003252308.1| PREDICTED: protein SCAF11 [Nomascus leucogenys]
          Length = 1463

 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 40/178 (22%), Gaps = 1/178 (0%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   +     +       ++ P   ++      
Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETLSQPSESPKDTIDKAKKPRTRRSRFHSPS 798

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q      E+    RK +    +   A     +   S    I   
Sbjct: 799 TTWSPNKDAPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARE 858

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              S     +          E+ +    T   +    P          S S    +++
Sbjct: 859 RRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRERES 916


>gi|84387285|ref|ZP_00990306.1| translation initiation factor IF-2 [Vibrio splendidus 12B01]
 gi|84377932|gb|EAP94794.1| translation initiation factor IF-2 [Vibrio splendidus 12B01]
          Length = 896

 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/158 (8%), Positives = 37/158 (23%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E        V    +  ++ QA            +E +     ++   + +      E  
Sbjct: 110 EAEEVANREVEEKAQRDAEEQAKRDAAEKAQREAEEKVTREADAKRDSEEKAQRAQAEKA 169

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                 +      +   +  +     +  + +    ++  +  E   +   N        
Sbjct: 170 KKDMNSKNADANAQAKKEADELKTRQEQEATRKAEAEAAKLVEEARKLAEENQERWSEEE 229

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +                +  + D   KK     RR+
Sbjct: 230 KKKKEQEKSADYHVTTSTYAREAEDAADKKDEKAPRRR 267


>gi|221509216|gb|EEE34785.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2714

 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 74/275 (26%), Gaps = 24/275 (8%)

Query: 445  ESLKKDRARVQVGAISNFGLLEMSRQ--RIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            E+  ++  R +V +      L+ +R+  R   +  E + +        G+ R ++     
Sbjct: 2278 EARTREGHRQRVESERPSDRLQGAREETRQGEAREERSDREQIEAVRRGWRREEAVKPRE 2337

Query: 503  ILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
              R   E       +  +      +      + +       E R   + +          
Sbjct: 2338 DTRGDREAAKDSCRSRKVQKTCEEE------DSEDELCARLERRQRTTDSSKSDEMATHG 2391

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                E   P            +       +  I    ++E     PK+ +  ++ D   +
Sbjct: 2392 ----ETRRPGTRREGREKAAFTVQNNAYPEAKIFSSDEEEHWTKAPKARAAREVTDLGET 2447

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
                          RRR+P                +   +D         + +     ++
Sbjct: 2448 NL-----------PRRRKPEARKEKTTRSKKTRKTRKNQEDETTETDNKDEDSKDEHSKD 2496

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                  +N D       + + +S +  S+    ++
Sbjct: 2497 ENSKDEDNKDEDNKDEDSKDEDSKDEDSEDEKPRS 2531



 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 6/151 (3%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +                 ++     + ++   ++E       +      +    S+    
Sbjct: 2328 RREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTDSSKSDEM 2387

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                  RR   RR   +   A  V + +  +  I  S +                 A   
Sbjct: 2388 ATHGETRRPGTRREGREKA-AFTVQNNAYPEAKIFSSDEEEHWTKA-----PKARAAREV 2441

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            T+  + ++P    PE     ++     +KTR
Sbjct: 2442 TDLGETNLPRRRKPEARKEKTTRSKKTRKTR 2472


>gi|260795120|ref|XP_002592554.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae]
 gi|229277775|gb|EEN48565.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae]
          Length = 3563

 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 62/576 (10%), Positives = 170/576 (29%), Gaps = 42/576 (7%)

Query: 85   DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
            DR++ ++E      + EA  + +         D   E     AN  +   E    ++  +
Sbjct: 1932 DRESEIEELRRRIRELEAENEALRKK----IADLRRELDDQTANMERYQREARDANSEVE 1987

Query: 145  VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204
             +  +   +      +            + K +   + +   E+  ++   ++  L +A 
Sbjct: 1988 RLEQLLAQRESDIRGLQSDLLSARDEVNITKMKTTEITRAESEQLSSQM-KLSNDLQMA- 2045

Query: 205  RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264
                L     +   +        + + L+                     ++T+      
Sbjct: 2046 ----LNEKQGRLGAM------EAEARKLRSDLEISRRDNEEKFAEINGLKNKTRDMESEL 2095

Query: 265  FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK----DISEIIVSGEKGYRE 320
                 +L+ + +           +  E N ++R +++        +     +      + 
Sbjct: 2096 SGLNQKLYQDKQANRSLQEKLDDLQFEMNRLRRELQEKEGYITSMETKMSNLESSVVGQS 2155

Query: 321  AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380
            ++   K+          + +        +  E ++  L + +  L  +     ++T  L 
Sbjct: 2156 SEKDGKIQEQMEEIRRLRMKIESLNDDMTERERKMLDLAREKEELQGQYEFYFSETSKLQ 2215

Query: 381  SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK-NNRSV 439
            +          E     T +  + EA E+    LR R  +     +  + E  + + R  
Sbjct: 2216 T-------QVTEIQTVQTQMGGSTEALEDELESLRRRLKSD---NEHANQEAFELHRRIT 2265

Query: 440  EKKLKESLKKDRARVQVGAISN-FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
            E +L+ +   ++ +     +S   G +E  RQ++R +  +S+     Y +         S
Sbjct: 2266 ELELERNTATEKLKHMEVNMSQGSGEVEKLRQQLRRAEQDSSNTELRYNEMHKVNERLRS 2325

Query: 499  VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
                IL   +            + + S  + +L  Q R  I++ +++            L
Sbjct: 2326 DMDDILHQRDIAQRLSKEQEAKLLSLSQRLRHLEEQTRTEILDLQSKLR---------NL 2376

Query: 559  ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             ++   +++      L              +  ++ E      +   + K+ + E++   
Sbjct: 2377 QNEYQLLDR-KQQDTLDKLRVAESELQTERTARQSGEFSQTTVSKTTVTKTSAAEEMDSK 2435

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
            +   +            R           G      
Sbjct: 2436 LRGGQPDDDHDGPDGMERVGEEKLGRKPKGHGKPRR 2471


>gi|255554000|ref|XP_002518040.1| conserved hypothetical protein [Ricinus communis]
 gi|223542636|gb|EEF44173.1| conserved hypothetical protein [Ricinus communis]
          Length = 946

 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 40/161 (24%), Gaps = 4/161 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +              GS S               +  L   K    + ++D+    +   
Sbjct: 617 RRESSPRRARKSSHGGSRSPRHHRGSRSSPRNDSDNKLKYRKRSRSKSVEDSKEKAKEAQ 676

Query: 627 VIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
             + +++ RR R        +   +   S   +       S    +E    T        
Sbjct: 677 DEKFKKQERRSRSLSVEEKNNVSKSSSRSIDENEPKHRGRSRSKSVEARRSTEKVNETRD 736

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +   S          S    ++   KK++   R++
Sbjct: 737 GRLKNRDRKRSRSKSVEVRRHSREKGNESRDKKSKHRDRKR 777


>gi|313245893|emb|CBY34876.1| unnamed protein product [Oikopleura dioica]
          Length = 500

 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 34/154 (22%), Gaps = 3/154 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            + +         T       S      +  E     +      K    +   ++   ++
Sbjct: 124 AVAQIKSGGKAEKTEKSSSKSSNKTKEAEKSERRGSRDESKQREKKS--DKRAESKPRDD 181

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE-NG 682
             G   +R +  RR R  +   +      +   +   D       E  D       +   
Sbjct: 182 KKGSKERRDKSERRDRDKSKKRETSEERRIRKEKERADRKEKERAERKDRKKGGEEKAER 241

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +   +                     +D   KK 
Sbjct: 242 SERRSSRPVRPTSAKGERRRPPPVPENDKEEKKK 275


>gi|291276334|ref|YP_003516106.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
 gi|290963528|emb|CBG39359.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
          Length = 529

 Score = 47.7 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 69/255 (27%), Gaps = 14/255 (5%)

Query: 44  LAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI-------HPDY-YQIPFSDRQALLK---E 92
            A V+ +EP    AFVD G +  GFL   EI       HP     I       +++   E
Sbjct: 267 KANVSNIEPY--GAFVDIGNDLEGFLHISEISWSKDIKHPQECLNIGQELDVEIIEINLE 324

Query: 93  SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET-EEESIISANNDVVSNVED 151
               +   + + +           +  + E                 I           D
Sbjct: 325 ERRLRVSLKKLTERPFAEFAKKYKEGDVVEGRVETLTDFGAFINLGAIDGLLHNEDAFWD 384

Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211
                 +   +    +  I ++    + + + +   E          Y         ++ 
Sbjct: 385 KDKKCKDHFKQGDILKVKIIKIDTKNERISLSMRVLEESPADRFAKKYKVDDAIEGTVVD 444

Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271
               G  I  +  + + R          ++  GM +    A    +  +++     L R 
Sbjct: 445 VKDFGVFIEVEGIDALIRNEDLSGIAKQDITKGMKLRGAIAYIDPSSNKVRVSMRRLERQ 504

Query: 272 WDNVRELALNSVAPH 286
            +     + NS    
Sbjct: 505 QEREDIKSFNSNKKM 519


>gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae
           ESF-5]
 gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae
           ESF-5]
          Length = 748

 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   E+                     +    E V+  +  GD+        +       
Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +  +++   +      +         PE      K++   ++       ++ +
Sbjct: 689 TIKNADKDKSSNNTKPKTNVNNTKDNSEPEQRRDSSKKRAWNEDNNAETAEVITE 743


>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 508

 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 40/167 (23%), Gaps = 8/167 (4%)

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
           V ++ +++R  +   E     +I+           F I   +PV    +         Q 
Sbjct: 350 VSFVDSEERQHLTAIERLIKRTIDREA-----LPAFAI---APVDPNESDARPPRQPRQP 401

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
             ++                ++      +  + S ++     +  R     +      D 
Sbjct: 402 SRHNNANAPRQARTDRPAGRQATPPSPSRAPVRSRDADNFGNRAPRSEVEAKRGHPDADG 461

Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
                 +        S      P    N       A    +  D + 
Sbjct: 462 NRALRNAGPNGAPRSSDSARAAPRPDGNRRPQSRPALFNAKTDDRNR 508


>gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii
           Ech703]
 gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703]
          Length = 722

 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 20/106 (18%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 627 RIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRIE 676

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
              DY Q+       +L+     +         V   ++T  ++  
Sbjct: 677 KVADYLQLGQEVPVKVLEVDRQGRVRLSIKEATVQSQEITPVSEAE 722


>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
 gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
          Length = 716

 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 23/123 (18%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 607 IAATGGEKAKFAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 653

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +         +   +     
Sbjct: 654 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATMPEAESPPAV 713

Query: 117 DHS 119
           +  
Sbjct: 714 EAE 716


>gi|327289343|ref|XP_003229384.1| PREDICTED: e3 ubiquitin-protein ligase RBBP6-like, partial [Anolis
            carolinensis]
          Length = 1223

 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 41/163 (25%), Gaps = 7/163 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E             K  S           +     + L      E   + +     E+  
Sbjct: 1037 EHPDSRSGKEEKSKKEHSSKDVKPEKLASKEEKAKKPLDKGKPVEVKPEKRKRKTEEKGD 1096

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-----PSDITNHNLLE 680
               ++    +  +  + +   A             + + +         P+     N   
Sbjct: 1097 SKEQEAASSKTPKPESAESKPAPKGVKAEPEDEKSEKTPEKDKTVLPAVPAKKIKLNRET 1156

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  TEN   +   ++     +++S   P   KT+   RRK
Sbjct: 1157 GKKIASTENAPPAKEALAEKPEPTTSSKVKPE--KTKGKMRRK 1197


>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           atrosepticum SCRI1043]
 gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 706

 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 27/122 (22%)

Query: 15  TRVVVLRDNR-------VEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGN 64
            R+      +       +EE+  + E        G +Y  KVTR+       AFV  GG 
Sbjct: 595 VRIASTDGEKAKHAIRRIEEITAEIE-------VGRVYQGKVTRIVDFG---AFVAIGGG 644

Query: 65  RHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND 117
           + G +   +I         DY Q+       +L+     +        +    +   P+ 
Sbjct: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANPQTQEAAAPSS 704

Query: 118 HS 119
             
Sbjct: 705 EE 706


>gi|258577965|ref|XP_002543164.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237903430|gb|EEP77831.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 522

 Score = 47.7 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
              +       +Q P+   N E              E  ED  D    ++     R++R 
Sbjct: 59  RQPSPEDKSPPAQEPASADNEERGRVRRKRSFDESKE--EDNADAETEKKDENSQRRKRS 116

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY--D 691
           R  +        +       +  + V  D     + P    + + L+      TE     
Sbjct: 117 RDSKVEEKQSLPEPKENRARTPSREVPRDETGQVLSPKKKRSRDQLDKDTQTHTETRGQP 176

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                   P + ++N + +   +K R   
Sbjct: 177 SDKADAEKPTLSTNNRTEEGEPEKKRHRD 205


>gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
 gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
          Length = 686

 Score = 47.3 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 23/124 (18%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 576 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 622

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +               + P 
Sbjct: 623 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSSAPA 682

Query: 117 DHSL 120
             + 
Sbjct: 683 PEAE 686


>gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
 gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
          Length = 748

 Score = 47.3 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   E+                     +    E V+  +  GD+        +       
Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +  +++   +      +         PE      K++   ++       ++ +
Sbjct: 689 TIKNADKDKSSNNTKPKTNVNNTKDNSEPEQRRDSSKKRAWNEDNNAETAGVITE 743


>gi|296534828|ref|ZP_06897171.1| ribonuclease G and E family protein [Roseomonas cervicalis ATCC
           49957]
 gi|296264845|gb|EFH11127.1| ribonuclease G and E family protein [Roseomonas cervicalis ATCC
           49957]
          Length = 202

 Score = 47.3 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409
            +E + + L    V LP  G + ++ T AL++ID+++G                   AE 
Sbjct: 55  DLEEEFERLAGMAVPLPGGGRLTLHPTPALLAIDIDAGPQAGSRDAAAHRALNAAALAE- 113

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
             RQ+RLR LAG I+VD   M+     +++   LK  L  D     +G      LLE+ R
Sbjct: 114 ALRQIRLRHLAGAILVDMAGMKVAA-RQALLPGLKPLLAADPHLRLLGLTGLG-LLELQR 171

Query: 470 QRIRSSVLESTTKV 483
           +R+ + + E     
Sbjct: 172 RRVHTPLHEVLGHP 185


>gi|312378982|gb|EFR25402.1| hypothetical protein AND_09293 [Anopheles darlingi]
          Length = 3431

 Score = 47.3 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 15/200 (7%)

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIE---------LADKLFYIEKGSPVQALVNTGHKV 581
            + N         E+    + +V               +     I++ +P +  V+   + 
Sbjct: 2358 IENNTAKQESNIESSSKTAPDVKSEPHTPPAISDKDASRPQSAIDEKAPSEKSVDLKAES 2417

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSE-----SLEDIQDNIVSEESTGVIRKRRRRRR 636
               S+  S     E      A+     SE       E    +  +  ++     R +   
Sbjct: 2418 KDASRPASAASEKEASRPQSAIDEKAPSEKSVDLKAESKDASRPASAASEKEASRPQSAI 2477

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDITNHNLLENGAHGFTENYDVSIP 695
              +  ++           + +     S      P S I      E       E+ D S P
Sbjct: 2478 DEKAPSEKSVDLKAESKDASRPASAASEKEASRPQSAIDEKAPSEKSVDLKAESKDASRP 2537

Query: 696  PVSTPEMESSNSSSDPIVKK 715
              +  E ESS   S    K+
Sbjct: 2538 ASAASEKESSRPQSTVDGKE 2557


>gi|237831745|ref|XP_002365170.1| hypothetical protein TGME49_059860 [Toxoplasma gondii ME49]
 gi|211962834|gb|EEA98029.1| hypothetical protein TGME49_059860 [Toxoplasma gondii ME49]
 gi|221506664|gb|EEE32281.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2085

 Score = 47.3 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 4/185 (2%)

Query: 534  QKRATIVEYEARFGVSINVVI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
             KR  +   EA  G          E         +       +  G + G+       D 
Sbjct: 1614 HKRGEVTREEADTGKEAQGRGSEDEARASEAETNRAIAAGEEMERGKEQGTSKGDEDPDM 1673

Query: 593  NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                  ++       +    +  +     E+      K RR+R+R   +    D   +  
Sbjct: 1674 EERRAGEETRQSQDDEGRRPDGHRGGDEEEQKREKPAKERRKRQRPENSEGEKD---MQR 1730

Query: 653  VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
              + +     S     +P         E+      E+ +  +P     ++E S    +  
Sbjct: 1731 EQTSERTDAPSQAATKKPRGCRPEVRTEDEKRREGESDEDEVPAHDGDDLEESRRPEEDG 1790

Query: 713  VKKTR 717
             + TR
Sbjct: 1791 EEATR 1795


>gi|296211398|ref|XP_002752394.1| PREDICTED: SFRS2-interacting protein [Callithrix jacchus]
          Length = 1463

 Score = 47.3 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 43/177 (24%), Gaps = 1/177 (0%)

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           + +     S+       ++      EK   +     +       ++ P   ++       
Sbjct: 740 DLKQINENSVIDSSENNMSSSDLADEKVETISQPSESPIDTIDKAKKPRTRRSRFHSPST 799

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                    +  +  Q      E+    +K +    +   A     +   S    I    
Sbjct: 800 TWSPNKDTPQEKKRPQSPSPRRETRKESKKSQSPSPKNESARGRKKSRSQSPNKDIARER 859

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             S     +  +I      E+ +    T   +    P          S S    +++
Sbjct: 860 RQSQSQSPKRDNIKESRRSESLSPRRDTLRENKRSQPREKDSSPGEKSRSQSRERES 916


>gi|194382938|dbj|BAG59025.1| unnamed protein product [Homo sapiens]
          Length = 1133

 Score = 47.3 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                L                 +          AP    +      +    P+P S    
Sbjct: 962  ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 1007

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668
                 + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 1008 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1067

Query: 669  EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            EP      +             + + S P      +     S  P  ++    + 
Sbjct: 1068 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1122



 Score = 45.0 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
            +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 987  DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 1046

Query: 625  TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 ++ +RRR        P       G V      +       +             +
Sbjct: 1047 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1106

Query: 680  ENGAHGFTENYDVSIPPVSTPEM 702
            E              P +  P+ 
Sbjct: 1107 EPSRKPKRRRAADVEPSLPEPKR 1129


>gi|209529739|ref|NP_001129337.1| nuclear pore complex interacting protein family member [Homo sapiens]
 gi|325511394|sp|A8MRT5|K220L_HUMAN RecName: Full=Putative NPIP-like protein LOC100132247
          Length = 1133

 Score = 47.3 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                L                 +          AP    +      +    P+P S    
Sbjct: 962  ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 1007

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668
                 + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 1008 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1067

Query: 669  EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            EP      +             + + S P      +     S  P  ++    + 
Sbjct: 1068 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1122



 Score = 45.0 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
            +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 987  DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 1046

Query: 625  TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 ++ +RRR        P       G V      +       +             +
Sbjct: 1047 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1106

Query: 680  ENGAHGFTENYDVSIPPVSTPEM 702
            E              P +  P+ 
Sbjct: 1107 EPSRKPKRRRAADVEPSLPEPKR 1129


>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
           568]
 gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
           568]
          Length = 705

 Score = 47.3 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 23/122 (18%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +                 P 
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSPAPE 703

Query: 117 DH 118
             
Sbjct: 704 AE 705


>gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
 gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
          Length = 706

 Score = 47.3 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 20/106 (18%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 611 RIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119
              DY Q+       +L+     +             +    ++  
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATSQSQETVQVSEEE 706


>gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
 gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
          Length = 707

 Score = 47.3 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 23/120 (19%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +             D T   
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPSQDETTEQ 703


>gi|195143807|ref|XP_002012888.1| GL23684 [Drosophila persimilis]
 gi|194101831|gb|EDW23874.1| GL23684 [Drosophila persimilis]
          Length = 2893

 Score = 47.3 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/182 (7%), Positives = 42/182 (23%), Gaps = 7/182 (3%)

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +        E +  V  +     +        +K  P         +  +  +    +  
Sbjct: 1072 ELEDRFNALERKMSVQKSSPAKTKKEPPDEEPDKEEPKARKEPAKEETKARKEPAEEEPK 1131

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                       P  +        ++    +     R+  +  +    +   ++   V D 
Sbjct: 1132 ARKE-------PAREEPKARKEPEDSEIRDEKPQERRASKDSKDSEESNKRNETVKVKDR 1184

Query: 654  SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            +  +   +      +EP      +          +         +  E   +   S P  
Sbjct: 1185 TPTKTREEKEASKRVEPKPSGKDSPDTKVESEKAKKKPEPEKVENQEEPVKTARKSPPST 1244

Query: 714  KK 715
            ++
Sbjct: 1245 EE 1246


>gi|328863036|gb|EGG12136.1| hypothetical protein MELLADRAFT_89392 [Melampsora larici-populina
           98AG31]
          Length = 414

 Score = 47.3 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 39/162 (24%), Gaps = 14/162 (8%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P      T       +  P          +         + + +         +     +
Sbjct: 170 PTPKNKPTPTPKLQPAPTPKAKPAPTPKAKPAPTPKAKPAPTPKAKPAPTPKAKPAPTPK 229

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF--- 686
            +     + +PAT +      +   +++  +  S      P            +      
Sbjct: 230 NKPAPIPKNKPATQNTITRKSNQFVAVKQPLSPSPKNSAFPGSSVQKKSGLKSSQSSACH 289

Query: 687 -----------TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                      TE    S+PP        +    DPI +K++
Sbjct: 290 KRDSDEAFSSDTEQELASLPPTQKKSSSLAPVKKDPITRKSK 331


>gi|194374391|dbj|BAG57091.1| unnamed protein product [Homo sapiens]
 gi|221046052|dbj|BAH14703.1| unnamed protein product [Homo sapiens]
          Length = 552

 Score = 46.9 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%)

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
               L                 +          AP    +      +    P+P S    
Sbjct: 381 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 426

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668
                + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 427 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 486

Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           EP      +             + + S P      +     S  P  ++    + 
Sbjct: 487 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 541



 Score = 45.0 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 406 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 465

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 466 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 525

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 526 EPSRKPKRRRAADVEPSLPEPKR 548


>gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 509

 Score = 46.9 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 14/180 (7%)

Query: 545 RFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
             G +I++V    L     F IE+                 +  P    +   +   +  
Sbjct: 339 ETGKAISLVC--ALEAPELFAIERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPK 396

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
            P           +   +         ++ +   +    +  +       S+ +   +DS
Sbjct: 397 KPKKPK-----APNAEAAGSDASSKGNQKAKAADKPQGQNRGNGKAKRQFSAPKEGNNDS 451

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +    P      N   +             P  + P    + +S     K +   ++ +
Sbjct: 452 ANKGKRP------NTKGSKPANNANGKTHGKPSHAKPNSAKTGNSKPANGKPSAQRRKPR 505


>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 712

 Score = 46.9 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 23/125 (18%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  ++ R  +   +R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 601 IAATDGDKARHAI---SRIEEITAEVE-------VGRIYTGKVTRIVDFG---AFVAIGG 647

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +          T  +     
Sbjct: 648 GKEGLVHISQIADKRVEKVTDYLQVGQEVPVKVLEIDRQGRIRLSMKEAVATTDEAPQSP 707

Query: 117 DHSLE 121
           + S+E
Sbjct: 708 ESSVE 712


>gi|297661470|ref|XP_002809264.1| PREDICTED: protein ELYS-like [Pongo abelii]
          Length = 2337

 Score = 46.9 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 12/202 (5%)

Query: 515  TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
               ++   T   +   + NQ+   I+       + ++ V       +          +  
Sbjct: 1934 KVSSVTKRTPRRIKRSVENQESVEII-----NDLKVSTVTSPSRTIRKLRSANLDASENT 1988

Query: 575  VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
             N      SD Q P          +      + +  +LE  Q  + +E       ++R R
Sbjct: 1989 GNKQDDKSSDEQLPVKRIRRVRGREVSPS-DVREDSNLESSQLTLQAEFDMSATPRKRGR 2047

Query: 635  RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
             R+  P+ D        +  S +     S       +       ++ G     ++     
Sbjct: 2048 PRKINPSEDVGSKAA-KEERSPKKKEAPSIKRRSTRNAPAKSENIDVGKPALGKSIL--- 2103

Query: 695  PPVSTPEMESSNSSSDPIVKKT 716
              V   E+    +S   + KK+
Sbjct: 2104 --VPNEELLMVMNSKKKLTKKS 2123


>gi|310820718|ref|YP_003953076.1| hypothetical protein STAUR_3459 [Stigmatella aurantiaca DW4/3-1]
 gi|309393790|gb|ADO71249.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 468

 Score = 46.9 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/151 (7%), Positives = 39/151 (25%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +  +A      K   ++     +       +++           +   +    ++  
Sbjct: 213 QRQTEAEAKRQAEAKQREETARAQAEARKAAEDEEKRRQAEEAQAKRQAETEAKQRKQEE 272

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +   RR           +       + ++       +   +     +    E     
Sbjct: 273 ARAQAEARRTAEAEEKQRQKEEAEARRQAEVEAKQRKQEEARAQAEARRSAQAEETRRQQ 332

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            T     + PP    + +S+ +      +KT
Sbjct: 333 ETARVASAEPPAREEQGDSAAAPGISARRKT 363


>gi|115968343|ref|XP_001177996.1| PREDICTED: similar to tetratricopeptide repeat domain 14, partial
            [Strongylocentrotus purpuratus]
          Length = 1730

 Score = 46.9 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 5/169 (2%)

Query: 559  ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
              +   I K                  Q  S   +       E L    +       +  
Sbjct: 930  EGEEVKIGKKRSRSKSSPNRGFAEDRKQEKSDKHSKTREESPEKLSKSSRRSRSLSPRTK 989

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF-----DMYMEPSDI 673
               E+      + R+R+R      +             ++   D             +  
Sbjct: 990  KEEEKEQRTPIRERKRKRSGSFIAESSSLETARRDRKSRDGESDEEKLRHKKESEGETRN 1049

Query: 674  TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             + +  E+     + +        S  E + S+S   P   + +  +RR
Sbjct: 1050 RHDSSQESSHRSKSADTGKDKRKESPKESKKSHSKHSPSPPERKNDRRR 1098



 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 2/144 (1%)

Query: 580  KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
               S  +    D+       DE  L   K    E    +  S+ES+   +     + +R+
Sbjct: 1013 AESSSLETARRDRKSRDGESDEEKLRHKKESEGETRNRHDSSQESSHRSKSADTGKDKRK 1072

Query: 640  PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
             +             S     +D      E           + +    E    S      
Sbjct: 1073 ESPKESKKSHSKHSPSPPERKNDRRRSKEEAKQNRYSRSSRSTSADVDERKQRSKSGSYD 1132

Query: 700  PEMESSNSSSDPIVKKTRWWKRRK 723
             + +  +        K R   RR+
Sbjct: 1133 RDKDKEHDRRSED--KDRDGNRRE 1154


>gi|329889113|ref|ZP_08267456.1| RNA-binding S1 domain-containing protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844414|gb|EGF93978.1| RNA-binding S1 domain-containing protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 336

 Score = 46.9 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
           + + +T AL+++D++   +             N E   + AR L L+   GL+ +D   +
Sbjct: 165 LAVQRTRALIAVDIDYAPAA-GRDSRKGREAVNREGLRQTARLLALKGWGGLVAIDLAGV 223

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
               +  +     +++   D A   +G +S FGLL++S    R+   E     
Sbjct: 224 GL--HPETTLFMARQAFA-DHAGAAIGPLSRFGLLQLSLPWGRTPADERLAAP 273


>gi|8163636|gb|AAF73775.1|AF154008_1 surface protein PspC [Streptococcus pneumoniae]
          Length = 509

 Score = 46.9 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 80/294 (27%), Gaps = 20/294 (6%)

Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQ--VGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           M+  K      +K+   ++ DR +    VG +   G ++    R  S   E +T      
Sbjct: 61  MKAAKQVDEYIEKMLSEIQLDRRKHTQNVGLLKKLGAIKTEYLRGLSVSKEKSTAELPS- 119

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
                I+ + + A    +       +                    +K+A   + E R  
Sbjct: 120 ----EIKEKLTAAFEQFKKDTLKSGK-KVAEAQKKVEEAQKKVAEAEKKAKDQKEEDRRN 174

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
              N    +EL    F +      +        V  +++ P  +  I+    +       
Sbjct: 175 YPTNTYKTLELEIAEFDV------KVKKAELKLVKEEAREPRDEGTIKQAKAEVESKKAE 228

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
            +   +   D   + E     +     + + +PA     A             + +    
Sbjct: 229 ATRLEKIKTDRKKAAEEEAKRKAAEEDKVKEKPAEQQQPAPAPQPEKPAPKPENPAEQPK 288

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            E          E      +E     +     P+ E     + P   KT W + 
Sbjct: 289 AEKPA---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGWKQE 336


>gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 721

 Score = 46.9 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 607 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 653

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +                 P 
Sbjct: 654 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPAAAPE 713

Query: 117 DHSLEEVA 124
             + E+  
Sbjct: 714 APTSEQGE 721


>gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score = 46.9 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +                 P 
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPAAAPE 703

Query: 117 DHSLEEVA 124
             + E+  
Sbjct: 704 APTSEQGE 711


>gi|322699711|gb|EFY91470.1| DNA mismatch repair protein msh6 [Metarhizium acridum CQMa 102]
          Length = 1220

 Score = 46.9 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 5/150 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              +         S SQ            +DE       S+  ED   + ++ + +  + 
Sbjct: 152 AESSDDEEPFNYSSRSQTRRGRARRTVKDEDEFDEDGVASQEEEDDMGDFIASDDSNDLP 211

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           + ++R+R  + AT    + V     + Q   I D  D  M     T+     N     TE
Sbjct: 212 RTKKRKRPAKAATARKRSNVSPPADTRQESPIHDVDDELMTDIPTTSTTSQWNYDPESTE 271

Query: 689 NYDVSIP----PVSTPEMESSNSSSDPIVK 714
              V  P        P+ +    + +P  +
Sbjct: 272 KRPVVTPAERAAAKDPKRKEKAHTKEPEDR 301


>gi|326479994|gb|EGE04004.1| hypothetical protein TEQG_03037 [Trichophyton equinum CBS 127.97]
          Length = 661

 Score = 46.9 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 1/147 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A       V      P+ +   E V +    L   +S +     D    +E T   RKR+
Sbjct: 172 APAPETEPVKEPVPEPAQEPVQEPVQEPVQELVKDESVNKSPSADIEAIKEDTDESRKRK 231

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           RR +   P+               Q       ++ +E             A       D 
Sbjct: 232 RRSQTPPPSPRSIALKKARLEEEQQQSRPAQEEIKVEERKEEQEAPAAAPAVAEPSARDT 291

Query: 693 SIP-PVSTPEMESSNSSSDPIVKKTRW 718
            +     TP        ++    K R 
Sbjct: 292 DVEMKEGTPPAPEPKQGAEEDESKDRV 318


>gi|326468526|gb|EGD92535.1| hypothetical protein TESG_00108 [Trichophyton tonsurans CBS 112818]
          Length = 661

 Score = 46.9 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 1/147 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A       V      P+ +   E V +    L   +S +     D    +E T   RKR+
Sbjct: 172 APAPETEPVKEPVPEPAQEPVQEPVQEPVQELVKDESVNKSPSADIEAIKEDTDESRKRK 231

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           RR +   P+               Q       ++ +E             A       D 
Sbjct: 232 RRSQTPPPSPRSIALKKARLEEEQQQSRPAQEEIKVEERKEEQEAPAAAPAVAEPSARDT 291

Query: 693 SIP-PVSTPEMESSNSSSDPIVKKTRW 718
            +     TP        ++    K R 
Sbjct: 292 DVEMKEGTPPAPEPKQGAEEDESKDRV 318


>gi|212532871|ref|XP_002146592.1| DNA ligase Cdc9, putative [Penicillium marneffei ATCC 18224]
 gi|210071956|gb|EEA26045.1| DNA ligase Cdc9, putative [Penicillium marneffei ATCC 18224]
          Length = 862

 Score = 46.9 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 2/147 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +            +          D N +    +       K    +   +   S++S  
Sbjct: 40  RRKEKTTSDKPVKEPKESEGQDDMDLNGDASAANNGSTSPTKGVKRDQSAEAEESDDSDI 99

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               ++RR+  + P        +V++  S   V   +        +  +    +  A   
Sbjct: 100 QPATKKRRKNAKSPRPRKSAKEIVAERPSSPKVSKKASGEVTPVEEDADEPAEDPSASEE 159

Query: 687 TENYDVSIPP--VSTPEMESSNSSSDP 711
            E+    I    +   +    ++ +DP
Sbjct: 160 DEDEKPEIKKKQIEKVQATLKSTGNDP 186


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score = 46.5 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 55/228 (24%), Gaps = 16/228 (7%)

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
                A   +  +            I     D + Y    ++    E E      + +  
Sbjct: 321 DVPHDAEDYVHRIGRTARADRDGAAITLVSKDDIYYFQQIEKFLEKEVE-----KVEL-P 374

Query: 555 GIELADKLFYIE--------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
                   +  +            V+             +    ++  + V         
Sbjct: 375 EELGEAPDYTADGKPQRKRSSAKSVRRKNRDQTAHKRKPRRNKNEQRPKEVDAKSEQTNE 434

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
            +++      D   ++      +++  RR+++                  Q + + + D 
Sbjct: 435 KQAQERSKTADKQPAKNRQKSNKRKNNRRKQQNNTDGAGTQRNKQRNDKRQAIDNKTGDK 494

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
            ++P   T + L     +          P     + E + + + P   
Sbjct: 495 QVQPQANTKNKLRRKPNNNR--KTQREDPHNGRRKFEPAKTETKPESG 540



 Score = 41.5 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 38/155 (24%), Gaps = 5/155 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           ++      LV+              +K +E V   E L   P  +   +  +    ++  
Sbjct: 340 DRDGAAITLVSKDDIYYFQQIEKFLEKEVEKVELPEELGEAPDYTADGKPQRKRSSAKSV 399

Query: 625 TGVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
               R +   +R+ RR    +     V +                 +     N       
Sbjct: 400 RRKNRDQTAHKRKPRRN-KNEQRPKEVDAKSEQTNEKQAQERSKTADKQPAKNRQKSNKR 458

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +        +     T   +  N     I  KT 
Sbjct: 459 KNNR-RKQQNNTDGAGTQRNKQRNDKRQAIDNKTG 492



 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/168 (6%), Positives = 38/168 (22%), Gaps = 2/168 (1%)

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
                    +    +           + +     D       +      + K E  E++ 
Sbjct: 319 NYDVPHDAEDYVHRIGRTARADRDGAAITLVSKDDIYYFQQIEKFLEKEVEKVELPEELG 378

Query: 617 DNIV-SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
           +    + +     ++   +  RR+               + Q   +              
Sbjct: 379 EAPDYTADGKPQRKRSSAKSVRRKNRDQTAHKRKPRRNKNEQRPKEVDAKSEQTNEKQA- 437

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +       +N   S    +    + +N+      +  +   +R+
Sbjct: 438 QERSKTADKQPAKNRQKSNKRKNNRRKQQNNTDGAGTQRNKQRNDKRQ 485


>gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
 gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
          Length = 714

 Score = 46.5 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 23/118 (19%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114
            + G +   +I         DY Q+       +L+     +             +   
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQAAEPEA 701


>gi|311740843|ref|ZP_07714670.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304363|gb|EFQ80439.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 1274

 Score = 46.5 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 11/168 (6%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K    Q   +        +Q P   K +      +   P P  +           ++  G
Sbjct: 308 KPQKSQPANSKPATGQQQAQKPDSPKRVPANSAKKQPQPQPAPKKNAQPSKPSQPQKGQG 367

Query: 627 VIR-----KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             R     K++   +   P+      G  +    + +    +     +     N    + 
Sbjct: 368 SARTPETAKQKAGPQASAPSAPKPKKGTTAPTPKVASPKTAADASQQKARSTQNKTTQDG 427

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK------KTRWWKRRK 723
                 ++   +    + P+ E+      P  K      KT+   +R+
Sbjct: 428 NKVVQPKSQQGAPSKGNLPKQEAKTQQPQPKAKEATPQNKTKKATKRR 475


>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
 gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
          Length = 709

 Score = 46.5 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 27/134 (20%)

Query: 7   IDASHVEETRVVVLRD-------NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA--- 56
           ID       ++  +          R+EE+  E E      G IY  KVTR+     A   
Sbjct: 586 IDIDDDGTVKIAAVDGNAAKNVMGRIEEIVAEVE-----AGAIYKGKVTRL-----ADFG 635

Query: 57  AFVDYGGNRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109
           AFV   GN+ G +   +I         DY Q+       +++     +            
Sbjct: 636 AFVAIVGNKEGLVHISQIAEERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQ 695

Query: 110 GDVTIPNDHSLEEV 123
                  D   E+ 
Sbjct: 696 ETEINQEDPVEEQE 709


>gi|291575122|ref|NP_569731.2| putative NPIP-like protein KIAA0220-like [Homo sapiens]
          Length = 1133

 Score = 46.5 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                L                 +          AP    +      +    P+P S    
Sbjct: 962  ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 1007

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668
                 + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 1008 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1067

Query: 669  EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            EP      +             + + S P      +     S  P  ++    + 
Sbjct: 1068 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1122



 Score = 44.6 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
            +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 987  DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 1046

Query: 625  TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 ++ +RRR        P       G V      +       +             +
Sbjct: 1047 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1106

Query: 680  ENGAHGFTENYDVSIPPVSTPEM 702
            E              P +  P+ 
Sbjct: 1107 EPSRKPKRRRAADVEPSLPEPKR 1129


>gi|327303420|ref|XP_003236402.1| DNA ligase I [Trichophyton rubrum CBS 118892]
 gi|326461744|gb|EGD87197.1| DNA ligase I [Trichophyton rubrum CBS 118892]
          Length = 889

 Score = 46.5 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 37/153 (24%), Gaps = 4/153 (2%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  +  S              +    +  K +  V       P+  ++   +I       
Sbjct: 33  FSSKSSSSKNDEAKERDDETVEEAPQTPQKQVGRVGSKRTPPPVDDADVDGEILSGGEKS 92

Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           ES   + +R++R+     +    +D          S   N    S               
Sbjct: 93  ESVSPVTRRQKRKEAVATKGDEESDEQPVTKRRRRSPKSNTKAKSPVNGGRSKVAATDEP 152

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                    E    S    S  E+E  +    P
Sbjct: 153 SPTNIKSDAEPELSSAEENSASEIEEDDIDDKP 185


>gi|270010403|gb|EFA06851.1| hypothetical protein TcasGA2_TC009794 [Tribolium castaneum]
          Length = 1540

 Score = 46.5 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 39/141 (27%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
                  A +   + +    D+   P   SE+ +  ++   + E      +   R     
Sbjct: 382 SEEMAEDALNLLNSDKDDSDDKEEAPEENSENSDKEKNGKETAEKNLENEESVERPENVP 441

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                  A    +V       +         ++  N    +NG+    ++         +
Sbjct: 442 DKDPLEIANNSENVDKPDEASEKDPTNETNENEQDNTEKNDNGSEKTNDDQSEKEANDKS 501

Query: 700 PEMESSNSSSDPIVKKTRWWK 720
            E   S+ +      K RW K
Sbjct: 502 DEGSKSDENKIEEKSKKRWRK 522


>gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
 gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
          Length = 579

 Score = 46.5 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/192 (8%), Positives = 44/192 (22%), Gaps = 11/192 (5%)

Query: 538 TIVEYEARFGVSINVVIGIEL--ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
              + E      +  +           +     +             S  +     +   
Sbjct: 356 HFQQIEKFLEKEVEKIPLPADLGEAPEY-----ARQSRPSKGRTTAKSRRRKDRDQQAHR 410

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
               ++     P+ +   +      + E +   + RR RR+      +          S+
Sbjct: 411 HKPNNQRRPARPEQDKEREAARPANAAEQSAGDKPRRNRRQSEARLAEGKPTEEKQTESN 470

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHG----FTENYDVSIPPVSTPEMESSNSSSDP 711
                    +   +P      N     A         N +      +  + +     ++ 
Sbjct: 471 PTANRQPRQENDRQPDKSGRGNRNRRNAKSAGGDSNRNGNRPADAENRMDADKPRRGNNR 530

Query: 712 IVKKTRWWKRRK 723
             K+     RR+
Sbjct: 531 NRKRGNGRDRRQ 542


>gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0010_16J05]
          Length = 718

 Score = 46.5 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 23  NRVEELDFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74
           NR++E+  E+E      G IY  KV R+       AFV+    + G L   +I
Sbjct: 627 NRIQEITAEAE-----VGRIYKGKVERIVDFG---AFVNILPGKDGLLHISQI 671


>gi|303234076|ref|ZP_07320725.1| hypothetical protein HMPREF9289_0713 [Finegoldia magna BVS033A4]
 gi|302495001|gb|EFL54758.1| hypothetical protein HMPREF9289_0713 [Finegoldia magna BVS033A4]
          Length = 767

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 60/230 (26%), Gaps = 9/230 (3%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           + Q     S++R              +     ++   L  +     +E E +   +  + 
Sbjct: 148 KQQKKFDESLIRQESIESDLNKTKTEVGQFRDELKDVLTTE--NARIEAEKKRVSAEQIR 205

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              E   +   I + S   A  +      S+ Q    +++     + + +      ++ E
Sbjct: 206 SNQEEVRQQLEITRQSSENARQSNESTRQSNEQQRQAEESTRKSEEQKRITAETNRDNAE 265

Query: 614 DIQDNIVSEESTGVIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +D+          ++    + R        +                 Q V  +    
Sbjct: 266 TKRDSAEKIRIENENKRISAEKTRAENDATYNKNEQQRQSQESTRQTQEQQRVDAEKLRQ 325

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             E +   + +   +       N +      +      +N       +++
Sbjct: 326 SQENTRKQSEDTRNSQEKTRQSNEESREDEETERYNAETNREKSEKTRQS 375


>gi|237712939|ref|ZP_04543420.1| transcription termination factor rho [Bacteroides sp. D1]
 gi|262409618|ref|ZP_06086158.1| transcription termination factor Rho [Bacteroides sp. 2_1_22]
 gi|294643469|ref|ZP_06721282.1| transcription termination factor Rho [Bacteroides ovatus SD CC 2a]
 gi|294807913|ref|ZP_06766694.1| transcription termination factor Rho [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229447058|gb|EEO52849.1| transcription termination factor rho [Bacteroides sp. D1]
 gi|262352471|gb|EEZ01571.1| transcription termination factor Rho [Bacteroides sp. 2_1_22]
 gi|292641188|gb|EFF59393.1| transcription termination factor Rho [Bacteroides ovatus SD CC 2a]
 gi|294444911|gb|EFG13597.1| transcription termination factor Rho [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 752

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/163 (7%), Positives = 37/163 (22%), Gaps = 1/163 (0%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
           ++    ++                 S   +  K    V   +       +   ++     
Sbjct: 63  NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122

Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              E+     KR+  R R+     +  +   V+  +                +      +
Sbjct: 123 AKAENATTAPKRKVGRPRKSADTEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPI 182

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +  A    ++   +       E     +    I K  +    
Sbjct: 183 QQPTAEKKAKSKPAAETNKPAAEANKPVAEKKVIDKPQKKAAP 225


>gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii
           str. Madrid E]
 gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia
           prowazekii]
          Length = 745

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           I AS  ++ ++ +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ 
Sbjct: 598 IYASDRDKIKIAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKD 647

Query: 67  GFLPFLEIHPDYYQIPFSD--------RQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118
           GF+   EI  D      S         +  L+   N  +           H        +
Sbjct: 648 GFVHISEI-SDARIDKVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNAYKDHSSNNTKQKN 706

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
           ++++ +        +++ +    NN  +S V   + 
Sbjct: 707 NVKDDSESEQRRDTSKKRTWNEDNNTEMSEVITERK 742


>gi|325203787|gb|ADY99240.1| IgA-specific serine endopeptidase [Neisseria meningitidis M01-240355]
          Length = 1777

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/267 (10%), Positives = 53/267 (19%), Gaps = 20/267 (7%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521
            +    +I                 A   + Q + A  + R   E   +            
Sbjct: 998  QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1057

Query: 522  HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                ++      ++  +  E   R               +   +      +A        
Sbjct: 1058 REARELATRQKAEQERSSAELARRHKK----------EREAAELSAKQKAEAEREAQALA 1107

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640
                      K                +E     +        T   + +R R+RR  P 
Sbjct: 1108 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1166

Query: 641  ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                A+               NV        +           E  A    E    +   
Sbjct: 1167 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1226

Query: 697  VSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +  + E+  +         R    RK
Sbjct: 1227 AAHRKAEAEEAKRQAAELAHRQEAERK 1253


>gi|115725233|ref|XP_791418.2| PREDICTED: similar to tetratricopeptide repeat domain 14, partial
            [Strongylocentrotus purpuratus]
          Length = 1698

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 5/169 (2%)

Query: 559  ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
              +   I K                  Q  S   +       E L    +       +  
Sbjct: 919  EGEEVKIGKKRSRSKSSPNRGFAEDRKQEKSDKHSKTREESPEKLSKSSRRSRSLSPRTK 978

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF-----DMYMEPSDI 673
               E+      + R+R+R      +             ++   D             +  
Sbjct: 979  KEEEKEQRTPIRERKRKRSGSFIAESSSLETARRDRKSRDGESDEEKLRHKKESEGETRN 1038

Query: 674  TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             + +  E+     + +        S  E + S+S   P   + +  +RR
Sbjct: 1039 RHDSSQESSHRSKSADTGKDKRKESPKESKKSHSKHSPSPPERKNDRRR 1087



 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 2/144 (1%)

Query: 580  KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
               S  +    D+       DE  L   K    E    +  S+ES+   +     + +R+
Sbjct: 1002 AESSSLETARRDRKSRDGESDEEKLRHKKESEGETRNRHDSSQESSHRSKSADTGKDKRK 1061

Query: 640  PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
             +             S     +D      E           + +    E    S      
Sbjct: 1062 ESPKESKKSHSKHSPSPPERKNDRRRSKEEAKQNRYSRSSRSTSADVDERKQRSKSGSYD 1121

Query: 700  PEMESSNSSSDPIVKKTRWWKRRK 723
             + +  +        K R   RR+
Sbjct: 1122 RDKDKEHDRRSED--KDRDGNRRE 1143


>gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae
           MTU5]
 gi|187611281|sp|A8F1P3|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae
           MTU5]
          Length = 745

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 27/166 (16%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           I AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ 
Sbjct: 598 IYASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKD 647

Query: 67  GFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126
           GF+   EI                +E     +      D V    +   N    +     
Sbjct: 648 GFVHISEIS---------------EERIETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKN 692

Query: 127 ANFS--QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170
           A+        +    + +N       D       +     +    I
Sbjct: 693 ADKDKSSNNTKPKTNAKDNSEPEQRRDSSKKRAWNEDNNAETAEVI 738


>gi|15965621|ref|NP_385974.1| hypothetical protein SMc00141 [Sinorhizobium meliloti 1021]
 gi|15074802|emb|CAC46447.1| Hypothetical protein SMc00141 [Sinorhizobium meliloti 1021]
          Length = 671

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 38/143 (26%), Gaps = 2/143 (1%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                +   +SQ  + ++  +   Q        +    +   +    +++     +R++R
Sbjct: 3   KRKQRQAEEESQGQAEEQQPQAEEQQTPRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKR 62

Query: 635 RR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           ++    +PA +        + +  +       +      +       E            
Sbjct: 63  QQQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKRQQQA 122

Query: 693 SIPPVSTPEMESSNSSSDPIVKK 715
              P +           +P  K+
Sbjct: 123 EEQPAAEESAPQQAEEQEPTRKR 145



 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/148 (7%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
               +  ++ Q  + +   +   ++       + ++ E       + +       RR++R
Sbjct: 31  RKKRQQQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKR 90

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           +         +    ++ S+ Q   +++                E  A    E  + +  
Sbjct: 91  Q------QQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEQEPTRK 144

Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  E   ++ +   ++    +  +
Sbjct: 145 RRQQQAEEQQPAAEEGAPQQAEEQEPTR 172



 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/124 (7%), Positives = 37/124 (29%), Gaps = 3/124 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +  +A      +  ++ Q  + +   +   ++       + ++ E       + +   
Sbjct: 50  QQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAE 109

Query: 627 VIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
               RR++R+++   +PA +        +    +       +     ++       E   
Sbjct: 110 EEAPRRKKRQQQAEEQPAAEESAPQQAEEQEPTRKRRQQQAEEQQPAAEEGAPQQAEEQE 169

Query: 684 HGFT 687
               
Sbjct: 170 PTRK 173


>gi|332024785|gb|EGI64973.1| RNA polymerase-associated protein CTR9-like protein [Acromyrmex
            echinatior]
          Length = 1225

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 56/216 (25%), Gaps = 6/216 (2%)

Query: 499  VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
                + +  E    +          H      L  +++    + E             + 
Sbjct: 798  HGDRMEQLAEAEARRCQDLLSQAQYHVARARRLDEEEKMLRRKQEEERQAFKMRQTEEQR 857

Query: 559  ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
              +    +K   +        +   ++       + +            +  + + + D+
Sbjct: 858  KLEEMRRQKEEEMLQKRQEYVEKTKNALVFGEMPSEK------PGKKGKRLRTDQYVSDS 911

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              S+   G     + R+R+R+P+++  D          ++   +S     +P        
Sbjct: 912  GGSDRDEGREEIPKERKRKRKPSSETKDRKSKGKGRRRKDESGNSGSDSDQPKRKRGKKN 971

Query: 679  LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                     +  +     +   +   S S SD    
Sbjct: 972  ARTKKEKTRKVVETLKGKLVKSKETISTSESDSDTG 1007


>gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii
           Rp22]
          Length = 745

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 7   IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66
           I AS  ++ ++ +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ 
Sbjct: 598 IYASDRDKIKIAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKD 647

Query: 67  GFLPFLEIHPDYYQIPFSD--------RQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118
           GF+   EI  D      S         +  L+   N  +           H        +
Sbjct: 648 GFVHISEI-SDARIDKVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNAYKDHSSNNTKQKN 706

Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
           ++++ +        +++ +    NN  +S V   + 
Sbjct: 707 NVKDDSESEQRRDTSKKRTWNEDNNTEMSEVITERK 742


>gi|237830209|ref|XP_002364402.1| hypothetical protein TGME49_111700 [Toxoplasma gondii ME49]
 gi|211962066|gb|EEA97261.1| hypothetical protein TGME49_111700 [Toxoplasma gondii ME49]
 gi|221507273|gb|EEE32877.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1280

 Score = 46.5 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 8/146 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G              +D +  S  +    V +DE   P  + E  + ++      + TG
Sbjct: 554 RGKSSARSEVED---SADERQASKKRGRGPVDEDEESSPGDEGEDAKRVRPVGRGRKQTG 610

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   + RR R               + +   +D    +  P    N           
Sbjct: 611 ASPRNTNKARRTRE-----KGAARRGTGATEPRRNDEAGEFNGPDAAANQAPFGFTKREE 665

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712
            +      P +     E  NS  +  
Sbjct: 666 AQQGLQDSPGLPPRNAEPGNSRRERA 691


>gi|115384626|ref|XP_001208860.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196552|gb|EAU38252.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1697

 Score = 46.5 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 43/164 (26%), Gaps = 16/164 (9%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +      ++        + P  +K  +         P     + E  Q+   +  ++   
Sbjct: 33  AKATTADDSQASDNEGGERPVRNKLRDTSITSAPKPPTATEPAAEKTQEGSENSRASSRG 92

Query: 629 RKRR---------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
           RKR                RR+R R  + +  +A    +    QN  D +  +       
Sbjct: 93  RKRSLDEDQPEMDEDDAGHRRKRSRDNSYEEENAAS-KESEQAQNPEDAAEKILSPKKKR 151

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           +   L +                  +   E       P  K+ R
Sbjct: 152 SRDQLDKEEPKPEGAAEKAVDVAEDSKPTEKVAEDGQPEKKRHR 195


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score = 46.5 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 4/159 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES-- 624
           K            +  +  Q  S D+N +   ++ +       +  ++ +     E+S  
Sbjct: 409 KDKKQGGNKQRSRRPTAQDQNVSDDRNTDKQERETSDRQNGNKQKQQENRPEATEEKSGD 468

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ--NVIDDSFDMYMEPSDITNHNLLENG 682
               R+ + R++ R+P  D          SS                      +N     
Sbjct: 469 KKNGRQSKGRQQDRQPKADKEKRTGRKPASSRDAAEKNTAQQAKKPNSRHKKRNNRQRTP 528

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                            P    + S    ++KK   W R
Sbjct: 529 EEKAVRRSTKYDIREELPTASKNGSGLKALIKKPLKWLR 567


>gi|215274263|sp|Q92617|NPPL3_HUMAN RecName: Full=Nuclear pore complex-interacting protein-like 3;
            AltName: Full=Protein pps22-1
          Length = 1050

 Score = 46.5 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                L                 +          AP    +      +    P+P S    
Sbjct: 879  ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 924

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668
                 + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 925  LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 984

Query: 669  EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            EP      +             + + S P      +     S  P  ++    + 
Sbjct: 985  EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1039



 Score = 44.2 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
            +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 904  DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 963

Query: 625  TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 ++ +RRR        P       G V      +       +             +
Sbjct: 964  DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1023

Query: 680  ENGAHGFTENYDVSIPPVSTPEM 702
            E              P +  P+ 
Sbjct: 1024 EPSRKPKRRRAADVEPSLPEPKR 1046


>gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
 gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
          Length = 711

 Score = 46.5 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
              DY Q+       +L+     +                 P     E+  
Sbjct: 661 KVTDYLQMNQEVPVKVLEVDRQGRIRLSIKEATEQSQPAVAPEAPVAEQGE 711


>gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 579

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/192 (8%), Positives = 43/192 (22%), Gaps = 11/192 (5%)

Query: 538 TIVEYEARFGVSINVVIGIEL--ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
              + E      +  +           +                   S  +     +   
Sbjct: 356 HFQQIEKFLEKEVEKIPLPADLGEAPEYT-----RQSRPSKGRTTAKSRRRKDRDQQAHR 410

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
               ++     P+ +   +      + E +   + RR RR+      +           +
Sbjct: 411 HKPNNQRRPARPEQDKEREAARPANATEQSAGDKPRRNRRQSEARLAEGKPTEEKQTEGN 470

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHG----FTENYDVSIPPVSTPEMESSNSSSDP 711
                    +   +P      N     A         N +      +  + +    S++ 
Sbjct: 471 PTANRQPRQESDRQPDKSGRGNRNRRNAKSAGGDSNRNGNRPADAENRMDADKPRRSNNR 530

Query: 712 IVKKTRWWKRRK 723
             K+     RR+
Sbjct: 531 NRKRGNGRDRRQ 542


>gi|332185481|ref|ZP_08387229.1| hypothetical protein SUS17_705 [Sphingomonas sp. S17]
 gi|332014459|gb|EGI56516.1| hypothetical protein SUS17_705 [Sphingomonas sp. S17]
          Length = 317

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 31/187 (16%)

Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428
           G + +  T A+   DV+         I               A+ +    + G I +DF 
Sbjct: 157 GVLRMTPTPAMTLFDVDGSPPHEPLSIAAARAV---------AQAILRHGIGGSIGIDFP 207

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488
            +E K   ++V + L  +L     R  V   + FG L++ R R R+S+ E          
Sbjct: 208 TLEGKAPRQAVAEALDATLPLPFERTAV---NGFGFLQIVRPRPRASIPERLGID----- 259

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN--QKRATIVEYEARF 546
                    + A ++LR  E           +      +   L+   + R  I     R 
Sbjct: 260 ------PIGARARALLRQWERE---PPGPAPVHRLPGPLYDRLMATPEWRDAIA---RRT 307

Query: 547 GVSINVV 553
           G  + + 
Sbjct: 308 GRPLQLE 314


>gi|302772322|ref|XP_002969579.1| hypothetical protein SELMODRAFT_410367 [Selaginella moellendorffii]
 gi|300163055|gb|EFJ29667.1| hypothetical protein SELMODRAFT_410367 [Selaginella moellendorffii]
          Length = 232

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 37/110 (33%)

Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469
              + RLR + G+IVVD    +                              FGL+EM+R
Sbjct: 140 CRLRQRLRGIGGIIVVDTEGPK------------------------------FGLMEMTR 169

Query: 470 QRIRSSVLEST-------TKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512
            R+    L  +       T  C  C G G I S       I R       
Sbjct: 170 ARVSLVDLIWSFQDRLSVTDSCGCCGGTGRIESVEMTLSKIERRSWPTGR 219


>gi|194383244|dbj|BAG64593.1| unnamed protein product [Homo sapiens]
          Length = 833

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%)

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
               L                 +          AP    +      +    P+P S    
Sbjct: 662 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 707

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668
                + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 708 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 767

Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           EP      +             + + S P      +     S  P  ++    + 
Sbjct: 768 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 822



 Score = 44.2 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 687 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 746

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 747 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 806

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 807 EPSRKPKRRRAADVEPSLPEPKR 829


>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
           391-98]
          Length = 710

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH-------PDYYQI 81
            E   ++   G IYL KV R+E      AFV+    + G +   E+         D  +I
Sbjct: 613 IEDIVREVQVGEIYLGKVKRIEKFG---AFVELFSGKDGLVHISELALERVGKVEDVVKI 669

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122
                  +++     + +           +  +  + + +E
Sbjct: 670 GDEISVKVIEIDKQGRVNLSRKVLLKEEQEKEVAKEEATQE 710


>gi|116748796|ref|YP_845483.1| hypothetical protein Sfum_1357 [Syntrophobacter fumaroxidans MPOB]
 gi|116697860|gb|ABK17048.1| hypothetical protein Sfum_1357 [Syntrophobacter fumaroxidans MPOB]
          Length = 784

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 46/161 (28%), Gaps = 2/161 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLEDIQDNIVSE 622
            ++   P + +       G +   P   +  E  + +DE     P        Q    ++
Sbjct: 569 QLQPARPGEQVQPGRPGTGREVSEPRGPRQPEQRIKRDEPSQQGPGQRPQLQDQRRPPAQ 628

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +    I+ + ++ +RR P         V +    Q       ++  +             
Sbjct: 629 DDRRTIKPQEQQPQRR-PDMQEQKRPGVQEQRRPQMQEQRRPEVQEQRRPQVQEQRRPPA 687

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                        P   PE++          ++ +  ++R+
Sbjct: 688 QDDRRTIKPQEQQPQRRPEVQEQRRPQVQEQRRPQMQEQRR 728



 Score = 46.1 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 3/149 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P Q +           Q P          QD+     P+ +  +   D    +      
Sbjct: 598 QPEQRIKRDEPSQQGPGQRPQLQDQRRPPAQDDRRTIKPQEQQPQRRPDMQEQKRPGVQE 657

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           ++R + + +RRP         V +        D       E        + E       E
Sbjct: 658 QRRPQMQEQRRPEVQEQRRPQVQEQRRPPAQDDRRTIKPQEQQPQRRPEVQEQRRPQVQE 717

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                +     P+++       P +++ R
Sbjct: 718 QRRPQMQEQRRPQVQE---QRRPQMQEQR 743



 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 3/151 (1%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                I++  P Q       ++    + P+ D       + +   P  + +  E  +  +
Sbjct: 598 QPEQRIKRDEPSQQGPGQRPQLQDQRRPPAQDDR--RTIKPQEQQPQRRPDMQEQKRPGV 655

Query: 620 VSEESTG-VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             +       ++R   + +RRP           D        +       E  +     +
Sbjct: 656 QEQRRPQMQEQRRPEVQEQRRPQVQEQRRPPAQDDRRTIKPQEQQPQRRPEVQEQRRPQV 715

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
            E       E     +     P+M+     +
Sbjct: 716 QEQRRPQMQEQRRPQVQEQRRPQMQEQRPGA 746


>gi|221486983|gb|EEE25229.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2084

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 50/185 (27%), Gaps = 4/185 (2%)

Query: 534  QKRATIVEYEARFGVSINVVI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
             KR  +   EA  G          E         +       +  G + G        D 
Sbjct: 1613 HKRGEVTREEADTGKEAQGRGSEDEARASEAETNRAIAAGEELERGKEQGMSKGDEDPDM 1672

Query: 593  NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                  ++       +    +  +     E+      K RR+R+R   +    D   +  
Sbjct: 1673 EEPRAGEETRQSQDDERRRPDGHRGGDEEEQEREKPAKERRKRQRPENSEGEKD---MQR 1729

Query: 653  VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
              + +     S     +P         E+      E+ +  +P     ++E S    +  
Sbjct: 1730 EQTSERADAPSQAATKKPRGCRPEVRTEDEKRREGESDEDEVPAHDGDDLEESRRPEEDG 1789

Query: 713  VKKTR 717
             + TR
Sbjct: 1790 EEATR 1794


>gi|308484221|ref|XP_003104311.1| hypothetical protein CRE_24950 [Caenorhabditis remanei]
 gi|308258280|gb|EFP02233.1| hypothetical protein CRE_24950 [Caenorhabditis remanei]
          Length = 956

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 5/153 (3%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +  + T   V S S +     +     Q EA  P  + + L++   +  SE+     R+
Sbjct: 695 DEKKIKTKSAVPSTSTSMPSTSDASKTKQKEATGPSRRMKQLDESSADSESEDDDKSKRQ 754

Query: 631 RRRRRRRRRPATDHH---DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
           ++ RR  R              V+D    +   +   +    P    N    +       
Sbjct: 755 KKVRRSTRTAKASSPIPAKRKKVADDDMDEGSEEVQDESKATPRGNGNAVRRKTLKRANA 814

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
           E      P  S  E   + +   P  K+ R   
Sbjct: 815 EEQKP--PRRSMKEKVEAETEEPPKKKRGRVRP 845


>gi|209695337|ref|YP_002263266.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
 gi|208009289|emb|CAQ79555.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
          Length = 716

 Score = 46.5 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 60/246 (24%), Gaps = 9/246 (3%)

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           S+        E     C  C    Y+       +   R  +  +      ++        
Sbjct: 403 SKSEDYEKCEEYHLSDCIECGACAYVCPSEIPLVQYYRQAKSEIYARKQDSLA--ADRAK 460

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
           V +     R    + E      +      E   K    EK +               +Q 
Sbjct: 461 VRFEEKNARMERDKLERENKFKLA----AENRRKEMSTEKPAGSGNDAIAAAIARVKAQK 516

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
            + +  I       A           +   +   +     + K   R  R++ A D    
Sbjct: 517 AAEESGIASPKPAVAAAIARAKAKQAEATKDHSGDPDNSEMAK--LREERKQQARDRKAK 574

Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
             + + +S     +       + +        +      TE    S    +  + ES++ 
Sbjct: 575 QELENTTSTNE-ENSPNKTEKKDAVAAAIARAKARKAAQTEKDAPSSNAETKTKPESTSD 633

Query: 708 SSDPIV 713
           +  P  
Sbjct: 634 NETPTE 639


>gi|281208823|gb|EFA82998.1| hypothetical protein PPL_03778 [Polysphondylium pallidum PN500]
          Length = 1705

 Score = 46.1 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 43/397 (10%), Positives = 113/397 (28%), Gaps = 33/397 (8%)

Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQ-----------------TEALVSIDVNSGRST 390
           +  ++  +       + L       +NQ                 T  +   ++N  +  
Sbjct: 42  KESMKNYVQKALNIAIPLKENNANRLNQQANLNGVAGSKASCEIFTGEVTKEELNVVKKL 101

Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL--- 447
            +         +N  A  +  R  ++RD A  I+   +     +N      K+K +    
Sbjct: 102 GKRRNTLFIRDSNSSAVVQAERDSQIRDTAASIITGAVKARAARNR---FIKMKSAAVLI 158

Query: 448 ----KKDRARVQVGAISNFGL--LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
               +  R R +     +  +    + R RI+     S  +     K            L
Sbjct: 159 QSVYRSHRQRSEFLTKRSAAIKIQSLVRMRIQRKSYLSQLQQIKLEKVRLEQERIEKERL 218

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
              R  +E + +       +     +    L Q+R    + E     +  +     +A +
Sbjct: 219 EQERLEQERIEKERLEQERLEQ-ERIENERLEQERIAAEKLEQERIAAEKLAEEERIATE 277

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
               E+ +  +           + +  + +K  E       +L   +  + +  Q+ I +
Sbjct: 278 KHEQERLAAEKLEQERIAAEKLEQERIAAEKLAEEERIAAEMLEQERIAAEKMEQERIAA 337

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           E+     R    +  + R A +  +   ++     +  I          +          
Sbjct: 338 EKLAEEERIAAEKLEQERIAAEKLEEERIAAEKLAEERIAAEKMEQERIAAEKLEQERIA 397

Query: 682 GAHGFTENYDVSI---PPVSTPEMESSNSSSDPIVKK 715
                 E           ++  ++E    +++ + ++
Sbjct: 398 AEKLEQERIAAEKLEQERIAAEKLEQERIAAEKLEQE 434


>gi|110005909|gb|ABG48500.1| titin a [Danio rerio]
          Length = 32757

 Score = 46.1 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 47/231 (20%), Gaps = 20/231 (8%)

Query: 504   LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
             L + E   ++       V TH +        ++        +    I             
Sbjct: 10377 LDTGEPESVKLKPFEKPVKTHPETEKDTKKDEKGREPATFDKSREPITFQKEERPLKD-- 10434

Query: 564   YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNI 619
               EK   +   V        D + P            +  +P    E        I    
Sbjct: 10435 --EKTKEIDVPVKKEKPSIPDKKEPDEVSVKAVTRPAKDEVPTEPKEKLVKGKGKIPSKD 10492

Query: 620   VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--DITNHN 677
                E   +    ++         +  +      +           D+  EPS       +
Sbjct: 10493 QEPEKVQLKPFTKKPSAGSPKEKEAAEPKDRKPIELSPLSRAPKDDIKKEPSIPTKKIDS 10552

Query: 678   LLENGAHGFTENYDVSIPPVST----------PEMESSNSSSDPIVKKTRW 718
                       E     +P               ++        PIV K   
Sbjct: 10553 QETPDKAKEVEKISTPVPVEDKTTPPKKVTPVKKITPKEDEKKPIVIKKGV 10603



 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 50/180 (27%), Gaps = 7/180 (3%)

Query: 547  GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
               I++    E+        K + +    +          +P  D+ I  +  D  L   
Sbjct: 8498 KKDIHLTKDEEIVPPK----KKATIPDKKDEAVVPKKKDVSPRKDEKIIPLKTDIPLPSK 8553

Query: 607  PKSESL---EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                     +D+      E+     +K      ++  AT      ++      + +    
Sbjct: 8554 KDEPIEYIKKDVVLPAKQEDKIVPQKKEVTPLSKKDEATAPKKTEMLPPAKQDEEIFPQK 8613

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             ++ +           +   +   +  +  IP  +   +      +    KK   + RRK
Sbjct: 8614 KEVALPSKKDEAVESKKKDVYFSAKQDEEIIPKKTEVLLPPKKEEAIEHKKKDVSYPRRK 8673


>gi|195587988|ref|XP_002083743.1| GD13891 [Drosophila simulans]
 gi|194195752|gb|EDX09328.1| GD13891 [Drosophila simulans]
          Length = 1889

 Score = 46.1 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 41/160 (25%), Gaps = 12/160 (7%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624
           EK      L N       +              +D       +     D      ++   
Sbjct: 368 EKDEIGGELKNAASGKSQERDQSRGKTKERSRERDRTRNKTREKSQARDQTKRKATDAEH 427

Query: 625 --TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                 ++   R +RR  + + +   +    +      ++S         + N +  E  
Sbjct: 428 TRVKSRKRSSSRDKRREKSKEKNGEKLKEKSTERSERRNES--------KVKNKDTNEEK 479

Query: 683 AHGFTENYDVSIPPVS-TPEMESSNSSSDPIVKKTRWWKR 721
               ++  D +          ++ +    P  KK R  + 
Sbjct: 480 LRERSKEKDRNHSKERLHERKQNKSEERKPEAKKVRNARE 519


>gi|221487475|gb|EEE25707.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1280

 Score = 46.1 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 8/146 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G              +D +  S  +    V +DE   P  + E  + ++      + TG
Sbjct: 554 RGKSSARSEVED---SADERQASKKRGRGPVDEDEESSPGDEGEDAKRVRPVGRGRKQTG 610

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   + RR R               + +   +D    +  P    N           
Sbjct: 611 ASPRNTNKARRTRE-----KGAARRGTGATEPRRNDEAGEFNGPDAEANQAPFGFTKREE 665

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712
            +      P +     E  NS  +  
Sbjct: 666 AQQGLQDSPGLPPRNAEPGNSRRERA 691


>gi|297588139|ref|ZP_06946783.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
 gi|297574828|gb|EFH93548.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
          Length = 2303

 Score = 46.1 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 46/227 (20%), Gaps = 20/227 (8%)

Query: 508  EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL----- 562
             +   +           + VV Y          E E  +   I +     L         
Sbjct: 1969 NKETGKLEVTEERTEPTNKVVEYGSKTDGEFKYESEKAYD--IIIRENPNLEAGKTNVIQ 2026

Query: 563  ----------FYIEKGSPVQALVN--TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
                        IE    V       T  +             I  V  D+ + P    +
Sbjct: 2027 EGKPGKTETTVKIENSKEVSRDTKTITEKQDKIIEIGTKNVCEIPPVNPDKPVDPDKPVD 2086

Query: 611  SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYME 669
               +       ++     +   +         D              +  I         
Sbjct: 2087 KDPENPTKPGEKDPENPDKPGDKDPENPDKPGDKDPENPDKPGDKDPETPIKPGDKDPEN 2146

Query: 670  PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            P    + +       G  +  +   P    PE +      +P   +T
Sbjct: 2147 PDKPGDKDPENPDKPGDKDPENPDKPGDKDPETQIKPGDKEPENPET 2193


>gi|309359073|emb|CAR99887.1| hypothetical protein CBG_27608 [Caenorhabditis briggsae AF16]
          Length = 1081

 Score = 46.1 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 47/157 (29%), Gaps = 6/157 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G P    V    +    + + S     +   +    +   ++   +  + +  SEE T  
Sbjct: 18  GRPRTRAVKDKAREVGATTSTSSTSTTKPSQKRRLAMKKAETAEKKLQRKDEESEEITAK 77

Query: 628 IRK---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            R+    R+R+ R     + H     S+         +  +        +N         
Sbjct: 78  RRRLDAIRKRKARVEETEEEHKKRTSSNKERTSRARSEETEDQYRRRKSSNRVSTSRARS 137

Query: 685 GFTENYDVSI---PPVSTPEMESSNSSSDPIVKKTRW 718
             TE   +         T +  S  + +D + ++ + 
Sbjct: 138 EETEGERIRRMLANAERTFKARSEGTETDTLKRRAQN 174


>gi|24658459|ref|NP_647974.1| CG5146 [Drosophila melanogaster]
 gi|23094104|gb|AAF50767.2| CG5146 [Drosophila melanogaster]
          Length = 1929

 Score = 46.1 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 58/226 (25%), Gaps = 15/226 (6%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA---DK 561
           R+      +  +      +  +       + +    +   R     +      L      
Sbjct: 312 RTQNRGRTRERSKESHGKSTENSKNKDEGRGKGRERDLFRRKSRERS--QDKNLNRAKSM 369

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
               EK        NT      +              +D       +     D   +  +
Sbjct: 370 NLSKEKDEVGGEPRNTASGKSQERDQSRGKTKDRSRERDRTRNKTREKSQARDQTRSKAN 429

Query: 622 EESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME------PSD 672
           +      + R+R   R +RR  + +       ++  S + +   S +   +       + 
Sbjct: 430 DAEHTRAKSRKRSSSRDKRREKSKEKLGDKEKNEDLSKEKLEGKSTEHSEKRNESKVKNK 489

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            TN           +++ + S   +     ++ +    P  KK R 
Sbjct: 490 DTNEENANKKLRERSKDRNHSKERLHE-RTQNKSEERKPEAKKVRN 534



 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 39/164 (23%), Gaps = 5/164 (3%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           IE     +   +  +  G  S             ++ +     KS      +D    +  
Sbjct: 286 IENNRSRELPQHKNYVRGKTSNRSHDRTQNRGRTRERSKESHGKSTENSKNKDEGRGKGR 345

Query: 625 TGVIRKRRRRRRRRRPATDHHDAG--VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
              + +R+ R R +    +   +               + +     E           + 
Sbjct: 346 ERDLFRRKSRERSQDKNLNRAKSMNLSKEKDEVGGEPRNTASGKSQERDQSRGKTKDRSR 405

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSS---SDPIVKKTRWWKRRK 723
               T N               +N +        K++    +R+
Sbjct: 406 ERDRTRNKTREKSQARDQTRSKANDAEHTRAKSRKRSSSRDKRR 449


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score = 46.1 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 9/170 (5%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P          ++ 
Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411

Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
             +E+  G    + +RR        + +T+   AG     S  Q   +   D      + 
Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKSNSEGQGRTNSKPDDRKPNGNK 471

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            N N         +++ +   P  +       N++     K +   ++ +
Sbjct: 472 PNGNKPNGNKPNGSKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 517


>gi|115443216|ref|XP_001218415.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624]
 gi|114188284|gb|EAU29984.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624]
          Length = 734

 Score = 46.1 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 39/161 (24%), Gaps = 10/161 (6%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--- 620
             +K  P  A         + + + +          DE +   P ++    + D      
Sbjct: 574 KFKKIGPTPAGKPAVDGAAATASSTNKPAETAGTTDDEVVDKTPITDEDGTVMDAEGGAF 633

Query: 621 ---SEESTGVI----RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
               E+          + R RR+   P       G            +D+     +  + 
Sbjct: 634 GPFEEDEDAERIARAERNRLRRKGLNPKAVLSKPGKSPKKDKPAEQSNDAPKANKKEKNE 693

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 +  A    E    S       + +S +       K
Sbjct: 694 AKEGTEKPSAGKPAEKAQSSPAEKKKNKKQSQSPKGKKSSK 734


>gi|328711239|ref|XP_001943019.2| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Acyrthosiphon
           pisum]
          Length = 988

 Score = 46.1 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 4/193 (2%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
            N+KR  + + +       N               K    +   +   +    ++  ++ 
Sbjct: 781 RNKKRKDLDKSKQNAERKENEKPKKNEKRNEIDKPKRYEERKGNDMPRQKEDRNENDNWR 840

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           +N +    D++     +++     ++   + +      +RR     RR    + +     
Sbjct: 841 RNEDKRDNDKSRKYEERNDKTRRYEERKENNDKPKRYEERRDNDMARRNEDRNLNDRSRR 900

Query: 652 DVSSIQNVIDDSFDMYMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
           +    +N I    +   E      N    EN      E              E   S  +
Sbjct: 901 NEDRNENDISRKNEERKENYRPRKNEERKENDRPRRNEE---RKENDRHSRNEIDKSKRN 957

Query: 711 PIVKKTRWWKRRK 723
              K  R  +RR+
Sbjct: 958 EYEKSRRNVERRE 970


>gi|34536310|dbj|BAC87606.1| unnamed protein product [Homo sapiens]
          Length = 834

 Score = 46.1 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 664 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 723

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
            ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 724 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 783

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + + S P      +     S  P  ++    + 
Sbjct: 784 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 823



 Score = 44.2 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 688 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 747

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 748 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 807

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 808 EPSRKPKRRRAADVEPSLPEPKR 830



 Score = 41.9 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
               L       E+                + T  +       PS D N++         
Sbjct: 663 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 719

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
              K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 720 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 773

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                             +E  +          + P   P+   +      + +  R
Sbjct: 774 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 830


>gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
 gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
          Length = 704

 Score = 46.1 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 11/104 (10%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88
            E    +   G IY  KV R+       AFV+    + G L          QI     + 
Sbjct: 611 IEEITAEAEVGAIYTGKVERIVDFG---AFVNILPGKDGLLHIS-------QIANERVEN 660

Query: 89  LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132
           +       +     V D    G + +     LE+ AP  +   E
Sbjct: 661 VSDHLKEGEEVRVKVLDVDQRGRIKLSIKELLEDEAPAESAGDE 704


>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
 gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
          Length = 509

 Score = 46.1 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 14/180 (7%)

Query: 545 RFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
             G +I++V    L     F IE+                 +  P    +   +   +  
Sbjct: 339 ETGKAISLVC--ALEAPELFAIERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPK 396

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
            P           +   +         ++ +   +    +  +       S+ +   +DS
Sbjct: 397 KPKKPK-----APNAEAAGSDASSKGNQKAKTADKPQGQNRGNGKAKRQFSAPKEGNNDS 451

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +    P      N   +             P  + P    + +S     K +   ++ +
Sbjct: 452 ANKGKRP------NTKGSKPANNANGKTNGKPSHAKPNSAKTGNSKPANGKPSAQRRKPR 505


>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
 gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
          Length = 709

 Score = 46.1 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 20/111 (18%)

Query: 23  NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDYGGNRHGFLPFLEIH---- 75
            R+EE+  E E      G IY  KVTR+     A   AFV   GN+ G +   +I     
Sbjct: 609 GRIEEIVAEVE-----AGAIYKGKVTRL-----ADFGAFVAIVGNKEGLIHISQIAEERV 658

Query: 76  ---PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
               DY Q+       +++     +                   D   E+ 
Sbjct: 659 EKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEINQEDPVEEQE 709


>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
 gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
          Length = 709

 Score = 46.1 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 20/111 (18%)

Query: 23  NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDYGGNRHGFLPFLEIH---- 75
            R+EE+  E E      G IY  KVTR+     A   AFV   GN+ G +   +I     
Sbjct: 609 GRIEEIVAEVE-----AGAIYKGKVTRL-----ADFGAFVAIVGNKEGLIHISQIAEERV 658

Query: 76  ---PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
               DY Q+       +++     +                   D   E+ 
Sbjct: 659 EKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEINQEDPVEEQE 709


>gi|153217494|gb|AAI51244.1| Synemin, intermediate filament protein [Homo sapiens]
 gi|168267314|dbj|BAG09713.1| desmuslin [synthetic construct]
          Length = 1565

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 45/171 (26%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++      + +     E+
Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYISEDSTIARES 471

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                   +    +    +E +  + +K   +  R +              +  +  + D
Sbjct: 472 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIR-----TKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577


>gi|154419325|ref|XP_001582679.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121916916|gb|EAY21693.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3]
          Length = 1082

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 2/155 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                   +      +   AP   K I    +DE  +  P     ++ +     +     
Sbjct: 845 NEIDDDSESEEKIKKAIKPAPKIKKIIITDSEDEPPMKKPSKRPKKEQEPVKKKKLQEEE 904

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
           I  ++++R      +D  D  ++           DS +  + P      N  +       
Sbjct: 905 ILPKKKKRIIND--SDSDDEVILPKKKKQVIKDLDSDEEDILPKKKRIINDSDEEVILPK 962

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +   + +   S  E E    S     KK     R+
Sbjct: 963 KKKRILLESDSNDEEEIPRKSKKSTPKKVSNSNRK 997


>gi|27529710|dbj|BAA20810.2| KIAA0353 [Homo sapiens]
          Length = 1614

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 45/171 (26%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++      + +     E+
Sbjct: 461 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYISEDSTIARES 520

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                   +    +    +E +  + +K   +  R +              +  +  + D
Sbjct: 521 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIR-----TKPEEKMFD 575

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 576 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 626


>gi|257066610|ref|YP_003152866.1| G5 domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256798490|gb|ACV29145.1| G5 domain protein [Anaerococcus prevotii DSM 20548]
          Length = 1859

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 46/209 (22%), Gaps = 4/209 (1%)

Query: 508  EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIE 566
             +   +       V   + VV Y          E E  +   I +     L       I+
Sbjct: 1519 NKETGKLEVTEERVEPKNKVVEYGSKTDGEFTYESEKAYD--IIIRENPNLEAGKTNVIQ 1576

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +G P +       +   +    +     +     E            D   +   E+   
Sbjct: 1577 EGKPGKTETTVKIENSKEVDRTTKTITEKQDKIIEIGTKNVCEIPPVDSDPSKPGEKEDP 1636

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                 +    +     D    G   D S      D S     E          +    G 
Sbjct: 1637 SKPGEKEDPSKPGEKEDPSKPGEKEDPSKPGEKEDPSKPGEKE-DPSKPGEKEDPSKPGE 1695

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             E+           +       S P  K+
Sbjct: 1696 KEDPSKPGEKEDPSKPGEKEDPSKPGEKE 1724


>gi|115400339|ref|XP_001215758.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191424|gb|EAU33124.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 617

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 30/154 (19%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              +      K        +  +      +D A     +     +            +  
Sbjct: 226 QDDSKRAKDTKSRPADSLSNPKRRSTMNSRDAAYDEEEQLRRAIEESKEDTKSIGDDIAM 285

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           +R +R R    A         +   S   +   S       S+                 
Sbjct: 286 RRGKRSRSDSEANKQATKRQRTSSPSPGAISKQSNPPSQPASEDEEKTKAPTNGARRQRA 345

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              S       E E          +K     +RK
Sbjct: 346 ASRSQRDKDAKEPEEPEGEQSEANRKKGKNDKRK 379



 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 6/166 (3%)

Query: 564 YIEKGSPVQALVNT----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            IE+       +           S S + +  +  +              +S    Q   
Sbjct: 268 AIEESKEDTKSIGDDIAMRRGKRSRSDSEANKQATKRQRTSSPSPGAISKQSNPPSQPAS 327

Query: 620 VSEESTGVIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
             EE T       RR+R   R             +    +       +   +  D  + +
Sbjct: 328 EDEEKTKAPTNGARRQRAASRSQRDKDAKEPEEPEGEQSEANRKKGKNDKRKGDDPESGH 387

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E+     T   + S P   TP        S P  +K+     R+
Sbjct: 388 EAESPVKPATTEPEPSQPSPDTPAPAQEAPPSRPSTRKSGRPPARR 433


>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
 gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
          Length = 509

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 14/180 (7%)

Query: 545 RFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
             G +I++V    L     F IE+                 +  P    +   +   +  
Sbjct: 339 ETGKAISLVC--ALEAPELFAIERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPK 396

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
            P           +   +         ++ +   +    +  +       S+ +   +DS
Sbjct: 397 KPKKPK-----APNAEAAGSDASSKGNQKAKAADKPQGQNRGNGKAKRQFSAPKEGNNDS 451

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +    P      N   +             P  + P    + +S     K +   ++ +
Sbjct: 452 TNKGKRP------NTKGSKPANNANGKTNGKPSHAKPNSAKTGNSKPANGKPSAQRRKPR 505


>gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 533

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 49/203 (24%), Gaps = 28/203 (13%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY----IEKGSPVQALVNTGHKV 581
           +    + N++   + + E              L  K F     +    P +    +    
Sbjct: 342 EAASLVCNEEAKQLRDIERLIK--------QSLPRKEFVGFEPVHGLPPSENQGKSKPGG 393

Query: 582 GSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                 P       +   Q     P  +  S    + +   +  +   + RR RR   + 
Sbjct: 394 SKQGAKPGNKSQGRKPQGQSRNAQPKQRQGSRAQEERSQQDKNPSRSEQPRRERRGNDQA 453

Query: 641 ATDH-HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
            ++  H A    D +   N   ++           N     +             P    
Sbjct: 454 RSERPHSARAHGDKARSDNARSENGRSDARTDSARNDKPRSD------------RPNTDR 501

Query: 700 PEMESSNSSSDPIVKKTRWWKRR 722
                  S + P  +     + R
Sbjct: 502 AASNKPRSGNRPQGQ--GQQRPR 522


>gi|302509298|ref|XP_003016609.1| hypothetical protein ARB_04898 [Arthroderma benhamiae CBS 112371]
 gi|291180179|gb|EFE35964.1| hypothetical protein ARB_04898 [Arthroderma benhamiae CBS 112371]
          Length = 909

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 4/153 (2%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  + G               +    +  K +          PI   +   +I       
Sbjct: 26  FSSKSGGSNNYETKEKDDEVVEGAPQTPQKQVGRAESKRTPPPIDDGDVDGEILSGGEKS 85

Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           ES   + +R++R+     +    +D          S   N    S               
Sbjct: 86  ESVSPVTRRQKRKEAIATKGDEESDEQPVTKRRRRSPKSNTKAKSPVNGGRSKAAATGEQ 145

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                    E    S    S  E+E  +    P
Sbjct: 146 SPTKIKSDAEPEQSSAEENSASEIEEDDIDDKP 178


>gi|255325434|ref|ZP_05366538.1| putative acyltransferase domain protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297520|gb|EET76833.1| putative acyltransferase domain protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 1250

 Score = 46.1 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 47/158 (29%), Gaps = 7/158 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +K  P  +  +TG +      +P          + +        +  +  + +  S++  
Sbjct: 286 QKSQPANSKPDTGQQQAQKPDSPKRVPANSAKKKPQP--QPTPKKDAQPSKPSQPSKDQD 343

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                   +++    A+           ++ +  +        + +   +     +  + 
Sbjct: 344 SARTPETAKQKAGPQASTPSSPKPKKGTTAPKPKV-----TAPKTAADASQQKARSTQNK 398

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             ++ +  +PP S     S +       KK +   + K
Sbjct: 399 TAQDGNKVVPPKSKQGTSSKDEKPKQEAKKQQPQPKAK 436


>gi|308461244|ref|XP_003092916.1| hypothetical protein CRE_16373 [Caenorhabditis remanei]
 gi|308252043|gb|EFO95995.1| hypothetical protein CRE_16373 [Caenorhabditis remanei]
          Length = 660

 Score = 45.7 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 40/166 (24%), Gaps = 5/166 (3%)

Query: 555 GIELADKLFY-IEKGSP-VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                   F  +  G        N  + V S S  P   +          L     + S 
Sbjct: 425 DEMADQPDFQGVNPGRQRSPQPQNRQNPVPSRSPTPLNRRRPATSRSPPPLNRRRPATSR 484

Query: 613 EDIQDNIVSEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
                +  +   +       RRR    R P          S      N    +      P
Sbjct: 485 SPQPQDRQNPVPSHSPTPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRPATSRSPPP 544

Query: 671 SDITNHNLLENGAHGFTENYDVSI-PPVSTPEMESSNSSSDPIVKK 715
            +        +      +N   S  PP       +++ S  P+ ++
Sbjct: 545 LNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRPATSRSPPPLNRR 590



 Score = 43.8 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 35/155 (22%), Gaps = 7/155 (4%)

Query: 565 IEKGSPVQALVNTGH----KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           + +  P  +           V S S  P   +        +       + S      N  
Sbjct: 475 LNRRRPATSRSPQPQDRQNPVPSHSPTPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRR 534

Query: 621 SEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              ++       RRR    R P          S      N    +      P +      
Sbjct: 535 RPATSRSPPPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRPATSRSPPPLNRRRPAT 594

Query: 679 LENGAHGFTENYDVSI-PPVSTPEMESSNSSSDPI 712
             +      +N   S  PP       + + S  P 
Sbjct: 595 SRSPQPQDRQNPAPSRSPPPLNRRRAAPSRSPSPQ 629



 Score = 40.7 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 6/117 (5%)

Query: 566 EKGSPVQALVNTG----HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
           ++ +P  +             S S  P   +        +       + S      N   
Sbjct: 518 DRQNPAPSRSPPPLNRRRPATSRSPPPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRR 577

Query: 622 EESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
             ++       RRR    R P          S      N    +      P  +  +
Sbjct: 578 PATSRSPPPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRAAPSRSPSPQHLRRN 634


>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
 gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
          Length = 714

 Score = 45.7 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 20/111 (18%)

Query: 23  NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDYGGNRHGFLPFLEIH---- 75
            R+EE+  E E      G IY  KVTR+     A   AFV   GN+ G +   +I     
Sbjct: 614 GRIEEIVAEVE-----AGAIYKGKVTRL-----ADFGAFVAIVGNKEGLIHISQIAEERV 663

Query: 76  ---PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123
               DY Q+       +++     +                   D   E+ 
Sbjct: 664 EKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEINQEDPVEEQE 714


>gi|301613955|ref|XP_002936474.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Xenopus
           (Silurana) tropicalis]
          Length = 995

 Score = 45.7 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 33/146 (22%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            A          +      +K       +     IP  +S E  +    ++ S    + R
Sbjct: 175 TASKRRSTSKTEEKAKHKSEKKKNKTISEAVKEKIPSGKSKERRKSKSPAKRSKSEDQPR 234

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           R    RR+    +       +          S       S           +        
Sbjct: 235 RSPALRRQSPEKNIKTKSPQEERMKSRDRKKSPVASESKSRERTKKSKSPVSRRSKSKER 294

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
            S      P    S+    P+   ++
Sbjct: 295 RSKSKEKKPRRSDSDRDRKPLKSPSK 320



 Score = 38.4 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 35/144 (24%), Gaps = 1/144 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + SP + +     +             +    +        KS      +      +S  
Sbjct: 241 RQSPEKNIKTKSPQEERMKSRDRKKSPVASESKSRERTKKSKSPVSRRSKSKERRSKSKE 300

Query: 627 VIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +R    R R+P  +   DA    +  S       S           +  +  + +  
Sbjct: 301 KKPRRSDSDRDRKPLKSPSKDASSGKENRSPGRRPARSPKARSLSPKQRDRAMRHSRSPP 360

Query: 686 FTENYDVSIPPVSTPEMESSNSSS 709
             +      PP        + S S
Sbjct: 361 VHDRKSKQSPPRIQSPTRRAKSKS 384


>gi|317124438|ref|YP_004098550.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315588526|gb|ADU47823.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 807

 Score = 45.7 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 35/154 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P +   +       D + P   ++     +        ++      +            
Sbjct: 94  RPFERRDDRRPFERRDDRRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPF 153

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R  R   RRP     D          ++            S+       ++       
Sbjct: 154 ERRDDRTSERRPFERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERRDDRRPFERR 213

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +   S         + ++       +  R  +RR
Sbjct: 214 DDRTSERRPFERRDDRTSERRPFERRDDRTSERR 247



 Score = 44.2 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 59/260 (22%), Gaps = 11/260 (4%)

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           M+  R  +     +T    +  G  +   R +     +  R   E     T+        
Sbjct: 40  MTDPRSAARTSRPSTTSTAHVGGRDWRGPRDERRDDRTSERRPSERRDDRTSERRPFERR 99

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
            D   +   ++R     +E R   +           +     +  P +   +   +    
Sbjct: 100 DDRRPF---ERRDDRRPFERRDDRTSERRP---FERRDDRTSERRPFERRDDRTSERRPF 153

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
            +            + +      +     D +      +     R+   RR  RRP    
Sbjct: 154 ERRDDRTSERRPFERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERRDDRRPFERR 213

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
            D          ++        +    D T+           T               E 
Sbjct: 214 DDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRRPFER 273

Query: 705 SNSSSDPIVKKTR---WWKR 721
            +       +      W +R
Sbjct: 274 RDDRGPSDRRNDGRDAWRQR 293



 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 32/156 (20%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G   +   +   +     +            + +   P  + +     +          
Sbjct: 66  RGPRDERRDDRTSERRPSERRDDRTSERRPFERRDDRRPFERRDDRRPFERRDDRTSERR 125

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +R  R   RRP     D          ++        +    D T+           
Sbjct: 126 PFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDR 185

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                           E  +       +  R  +RR
Sbjct: 186 RPFERRDDRTSERRPFERRDDRRPFERRDDRTSERR 221



 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/154 (7%), Positives = 28/154 (18%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                         +  + P   ++     +        ++      +            
Sbjct: 107 RRDDRRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPF 166

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R  R   RRP     D           +                  +           
Sbjct: 167 ERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERR 226

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +   S         + ++       +  R  +RR
Sbjct: 227 DDRTSERRPFERRDDRTSERRPFERRDDRTSERR 260


>gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis
           URRWXCal2]
 gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis
           URRWXCal2]
          Length = 747

 Score = 45.7 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 12/158 (7%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQA--LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126
           +   EI  +  +   S  +   ++K   I   +       + + D    +++   +    
Sbjct: 650 VHISEISEERIETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNPKPKNNVN 709

Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                   E    S       +  + K  +  +     
Sbjct: 710 NAKENSEPERRDSSKKRAWNEDSNNDKEEAITERKYFN 747


>gi|47093078|ref|ZP_00230855.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 4b
          H7858]
 gi|47018518|gb|EAL09274.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 4b
          H7858]
          Length = 49

 Score = 45.7 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 1  MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRV 50
          M    L+ ++   E R+  + D+ + +++     +K   G+IY   + ++
Sbjct: 1  MKK--LVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKI 48


>gi|255564343|ref|XP_002523168.1| ATP binding protein, putative [Ricinus communis]
 gi|223537575|gb|EEF39199.1| ATP binding protein, putative [Ricinus communis]
          Length = 1548

 Score = 45.7 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 15/266 (5%)

Query: 465 LEMSRQRIRSSVLESTTKVC-TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523
           LE  R+ +R +V     +V     +     ++             E   +  A       
Sbjct: 28  LEGGRKHLRQAVQILNEQVDKIQAENLALKKAYEEEKARAGTEKVEREQELAARVAFEKE 87

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
            S +   L + K+  I + E + G  + ++    ++     I +   +            
Sbjct: 88  ISALKSELCSLKQKGIADVEDKTG-ELKILQD-HVSKADKEIARLKALLEKEKKRADSEK 145

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
            +             + E       SE+L+  + + + E     + + R+R        +
Sbjct: 146 KNAEAQKKSASXXRNEVEEAKSKLVSETLKYEEASKMLEAEKNKVTEERKRADSEMDKAE 205

Query: 644 HHDAGVVSDVSS-----------IQNVIDDSFDMYMEPSDITN-HNLLENGAHGFTENYD 691
                  ++               Q + D   ++     +I N  +    G     +   
Sbjct: 206 QQRKLAEANEKKFMDEKSLANSLSQQLEDARQEVEELQKEINNLTSSKNLGDASRNQYDQ 265

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
           ++IPPV++        SS  I  KTR
Sbjct: 266 INIPPVNSEMSSLQQKSSSDIEDKTR 291


>gi|194381794|dbj|BAG64266.1| unnamed protein product [Homo sapiens]
          Length = 849

 Score = 45.7 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 679 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 738

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
            ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 739 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 798

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + + S P      +     S  P  ++    + 
Sbjct: 799 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 838



 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 703 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 762

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 763 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 822

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 823 EPSRKPKRRRAADVEPSLPEPKR 845



 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
               L       E+                + T  +       PS D N++         
Sbjct: 678 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 734

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
              K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 735 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 788

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                             +E  +          + P   P+   +      + +  R
Sbjct: 789 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 845


>gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 693

 Score = 45.7 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           G IY  K+ ++  S   AFV+  G++ G+LPF EI
Sbjct: 625 GQIYKGKIVKLLDS--GAFVNLLGSQDGYLPFSEI 657


>gi|40788916|dbj|BAA13210.2| KIAA0220 [Homo sapiens]
          Length = 884

 Score = 45.7 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 714 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 773

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
            ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 774 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 833

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + + S P      +     S  P  ++    + 
Sbjct: 834 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 873



 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 738 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 797

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 798 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 857

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 858 EPSRKPKRRRAADVEPSLPEPKR 880



 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
               L       E+                + T  +       PS D N++         
Sbjct: 713 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 769

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
              K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 770 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 823

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                             +E  +          + P   P+   +      + +  R
Sbjct: 824 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 880


>gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
          Length = 710

 Score = 45.7 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVA 104
            + G +   +I         DY Q+       +L+     +       
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 691


>gi|302656594|ref|XP_003020049.1| hypothetical protein TRV_05913 [Trichophyton verrucosum HKI 0517]
 gi|291183829|gb|EFE39425.1| hypothetical protein TRV_05913 [Trichophyton verrucosum HKI 0517]
          Length = 908

 Score = 45.7 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 4/153 (2%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  +  S             ++    +  K +          PI   +   +I       
Sbjct: 33  FSSKSSSSKNDETKEKDDEVAEGAPQTPQKQVGRAESKRTPPPIDDGDVDGEILSGGEKS 92

Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           ES   + +R++R+     +    +D          S   N    S               
Sbjct: 93  ESVSPVTRRQKRKEAVAIKGDEESDEQPVTKRRRRSPKSNTKAKSPVNGGRSKAAATGEQ 152

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                    E    S    S  E+E  +    P
Sbjct: 153 SPTKIKSDAEPEQSSAEENSASEIEEDDIDDKP 185


>gi|58865984|ref|NP_001012204.1| TRAF3-interacting protein 1 [Rattus norvegicus]
 gi|81883809|sp|Q5XIN3|MIPT3_RAT RecName: Full=TRAF3-interacting protein 1
 gi|53734525|gb|AAH83645.1| TNF receptor-associated factor 3 interacting protein 1 [Rattus
           norvegicus]
          Length = 653

 Score = 45.7 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/160 (8%), Positives = 42/160 (26%), Gaps = 3/160 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             ++                + ++    +        +       S+  E  +D   ++E
Sbjct: 145 KAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKE 204

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +     +   R R R    +   A    D        D   +   +    ++    +   
Sbjct: 205 ADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQ 264

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +           + ++   + DP  +K+R   + +
Sbjct: 265 KDRDRDKGKDRER---RKSKNGEHTRDPDREKSRDADKSE 301


>gi|261327858|emb|CBH10836.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 1502

 Score = 45.7 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/225 (7%), Positives = 55/225 (24%), Gaps = 10/225 (4%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           +  EE   +  A  +     +        +      E EA    +               
Sbjct: 509 KKAEEEAARKKAEKMRKRAQARKARMKAEEAARKRAEEEAARKKA---EEEAARKRAEEE 565

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
             +    +       +  +  +    +   +   ++ A     +  + +  ++    +++
Sbjct: 566 AARKRAEEEAARKKAEEEAARKRAEEEAARKRAEEEAARKRAEEEAARKKAEEEAARKKA 625

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                ++R      R   +   A   ++  + +   ++         +       E  A 
Sbjct: 626 EEEAARKRAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAAR 685

Query: 685 GFTENYDVSIP-------PVSTPEMESSNSSSDPIVKKTRWWKRR 722
              E                +  E     +  +   KK    ++R
Sbjct: 686 KKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEKMRKR 730



 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/155 (5%), Positives = 45/155 (29%), Gaps = 2/155 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       +  +  +    +   +   ++ A     +  + +  ++    +++  
Sbjct: 454 RKRAEEEASTKRAEEEAARKKAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEE 513

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +++  + R+R       A + ++ ++ +   +++     E          E      
Sbjct: 514 EAARKKAEKMRKRA--QARKARMKAEEAARKRAEEEAARKKAEEEAARKRAEEEAARKRA 571

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            E               +   ++    ++    KR
Sbjct: 572 EEEAARKKAEEEAARKRAEEEAARKRAEEEAARKR 606


>gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 693

 Score = 45.7 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           G IY  K+ ++  S   AFV+  G++ G+LPF EI
Sbjct: 625 GQIYKGKIVKLLDS--GAFVNLLGSQDGYLPFSEI 657


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score = 45.7 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 41/165 (24%), Gaps = 4/165 (2%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P          ++ 
Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             +E+  G    + +RR       + +            N                N N 
Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRANSKPDDRKPNGNK 471

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                    ++ +   P  +       N++     K +   ++ +
Sbjct: 472 PNGNKPNGNKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 512


>gi|239745501|ref|XP_002343471.1| PREDICTED: nuclear pore complex-interacting protein-like 3-like
            isoform 1 [Homo sapiens]
          Length = 1122

 Score = 45.7 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 32/153 (20%), Gaps = 18/153 (11%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                L                 +          AP+   +      +    P+P S    
Sbjct: 980  ADDNLKTP--------------SERQLTPLPPSAPTSADDNIKTPAERLRGPLPPSADDN 1025

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                 + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 1026 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1085

Query: 670  PSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
                     +E              P    P+ 
Sbjct: 1086 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKR 1118


>gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
 gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
          Length = 748

 Score = 45.7 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 31/175 (17%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   E+                     +    E V+  +  GD+        +       
Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +  +++   +                PE      K++   ++       ++ +
Sbjct: 689 TIKNADKDKSSNNTKPKTHVNNTKDNSEPEQRRDSSKKRAWNEDNNAEIAEVITE 743


>gi|86148617|ref|ZP_01066900.1| translation initiation factor IF-2 [Vibrio sp. MED222]
 gi|218710445|ref|YP_002418066.1| translation initiation factor IF-2 [Vibrio splendidus LGP32]
 gi|254803479|sp|B7VJH7|IF2_VIBSL RecName: Full=Translation initiation factor IF-2
 gi|85833608|gb|EAQ51783.1| translation initiation factor IF-2 [Vibrio sp. MED222]
 gi|218323464|emb|CAV19641.1| translation initiation factor 2 [Vibrio splendidus LGP32]
          Length = 896

 Score = 45.7 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/158 (6%), Positives = 35/158 (22%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E             +  ++ QA            +  +     ++   + +      E  
Sbjct: 110 EAEEVANREAEEKAQRDAEEQAKRDAAEKAQREAEAKVTREADAKREAEEKAQRAQAEKA 169

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                 +      +   +  +     +  + +    ++  +  E   +   N        
Sbjct: 170 KKDMNSKNADANAQAKKEADELKARQEQEATRKAEAEAAKLVEEARKLAEENQERWSEEE 229

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +                +  + D   KK     RR+
Sbjct: 230 KKKKEQEKSADYHVTTSTYAREAEDAADKKDEKAPRRR 267


>gi|317419318|emb|CBN81355.1| Proline-rich protein 12 [Dicentrarchus labrax]
          Length = 2082

 Score = 45.7 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 42/147 (28%), Gaps = 5/147 (3%)

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                    +   +  P+       V ++E + P  + E  E  +    + +     ++  
Sbjct: 1727 TPALRRQSLPKMASPPATQAPPRVVEKEERVAPPVQREQREKTRTATATTKEQREKKETP 1786

Query: 633  RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
                + +      D+    +      +  D  +     ++       +       E    
Sbjct: 1787 DAVLKAKEKEKERDSEKEREKEKRVQLQQDKVEKRAAAAERGRAKEEKKALE-RKEKEKA 1845

Query: 693  SIPPVSTPEMESSNSSSDPIVKKTRWW 719
              PP S P    +   ++P  KK + W
Sbjct: 1846 ERPPKSKP----AKVKAEPPPKKRKKW 1868


>gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. Iowa]
 gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii
           str. Iowa]
          Length = 748

 Score = 45.7 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   E+                     +    E V+  +  GD+        +       
Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +  +++   +      S         PE      K++   ++       ++ +
Sbjct: 689 TIKNADKDKFSNNTKPKTSVNNTKDNSEPEQRHDSSKKRAWNEDNNAEIAEVITE 743


>gi|198421981|ref|XP_002130898.1| PREDICTED: similar to mitogen-activated protein kinase kinase
           kinase kinase 4 [Ciona intestinalis]
          Length = 1022

 Score = 45.7 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
            +   +       +  +    DE      K E      D   +       ++ R R +RR
Sbjct: 352 QQENKERSELQKRERQQKELNDERRKNEKKKEDRRKSDDQRENLRREQAKKEERAREQRR 411

Query: 639 RPATDHHDAGVVSD--VSSIQNVIDDSFDMYMEPSDITNHNLLENG----AHGFTENYDV 692
           +   +       +      IQ    +  + +   ++       EN     +H  + +  V
Sbjct: 412 KLDAERKRKEEEARLMQERIQQQRREQEEAHQRATEEALRRKKENEAPPISHQRSHSQHV 471

Query: 693 SIPPVSTPEMESSNSSSDPI 712
              P    ++E  +  + P 
Sbjct: 472 REKPQWARQIEERSKQNRPE 491


>gi|298484343|ref|ZP_07002504.1| transcription termination factor Rho [Bacteroides sp. D22]
 gi|298269497|gb|EFI11097.1| transcription termination factor Rho [Bacteroides sp. D22]
          Length = 752

 Score = 45.7 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/163 (8%), Positives = 37/163 (22%), Gaps = 1/163 (0%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
           ++    ++                 S   +  K    V   +       +   ++     
Sbjct: 63  NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122

Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              E+     KR+  R R+   A +  +   V+  +                +       
Sbjct: 123 AKAENATTAPKRKVGRPRKSADAEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPA 182

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +  A    ++   +       E     +    I K  +    
Sbjct: 183 QQPTAEKKAKSKPAAETNKPAAEPNKPAAEKKVIDKPQKKAAP 225


>gi|298528716|ref|ZP_07016120.1| translation initiation factor IF-2 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512368|gb|EFI36270.1| translation initiation factor IF-2 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 889

 Score = 45.7 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 32/106 (30%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            PV A     H   + ++ P+ +   +   Q+    P    +  ++       ++     
Sbjct: 105 KPVDAKAPEEHLQETPAREPAAEDGDQAQKQEVTQEPDAADQHKQEAAPEEARDKEARRD 164

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
           R  R+  R+++   +     V+S                 +P    
Sbjct: 165 RPPRKGARKKKAPPEEPKVKVISRPEPEAEPRTTVTPEPAKPEVTE 210


>gi|194756214|ref|XP_001960374.1| GF13333 [Drosophila ananassae]
 gi|190621672|gb|EDV37196.1| GF13333 [Drosophila ananassae]
          Length = 4865

 Score = 45.7 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 64/638 (10%), Positives = 166/638 (26%), Gaps = 32/638 (5%)

Query: 83   FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
             S+  A        +   +    +                     +   + + ES    N
Sbjct: 2857 VSEVLAEKISEEKVEESKKPDVKESEAKPDQAKTLEKQSLEEQKLDAKTQKQAESASEKN 2916

Query: 143  NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
             ++    E +     E+  ++ K+    +   K  Q   ++    E     A        
Sbjct: 2917 LEMAEVSEVLAEKISEEKVEESKKLDVKESEAKPDQAKTLEKQSLEEQKLDAKTQKQAES 2976

Query: 203  AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
            A   +  M   S+            + K L       +      +   +    +   +I+
Sbjct: 2977 ASEKNSEMAEVSEVLAEKISEEKVEESKKLDVKESEAKPDQAKALEKESLEEQQLDAKIQ 3036

Query: 263  RDFEYL-MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +  E    +  +      + +        E +            D ++ +       ++ 
Sbjct: 3037 KQAESAPEKKSETAEVSEVVAEKMSEEKVEESKKLDVKESEAKPDQAKALEKESLEEQQL 3096

Query: 322  KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
               ++    S +    +  +   +      E +++   + EV             E    
Sbjct: 3097 DAKIQKQAESASEKNSEMAEVSEVVAEKMSEEKVEESKKPEVKESEAKPDQAKALEKQSL 3156

Query: 382  IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
             +      T++     +  ++      E             ++ + I  E+ + ++  E 
Sbjct: 3157 EEQQLDAKTQKQAESASEKKSETAEVSE-------------VLAEKISEEKVEESKKPEV 3203

Query: 442  KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            K  E+ K D+A+             + ++ +    L++ T+            +     +
Sbjct: 3204 KESEA-KPDQAK------------ALEKKSLEEQQLDAKTQKQAKSASEKKPETAEVSEV 3250

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
               +  EE + +     +            L ++     +  A+           +    
Sbjct: 3251 LAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEDQKLYAKTQKQAESTAEKKSETA 3310

Query: 562  LFY---IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                   EK S  +   +   +V      P   K +E    +E  L     +  +   + 
Sbjct: 3311 EVSEVLAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAKSASEK 3370

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     +   +    R   +         +     + +   S +   +  D      
Sbjct: 3371 KPETAEVSEVLAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEE--QKLDAKTQKQ 3428

Query: 679  LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             E+ A   +E  +VS         E    S  P VK++
Sbjct: 3429 AESTAEKKSETAEVSEVLAEKISEEKVEESKKPEVKES 3466



 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 2/221 (0%)

Query: 496  QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
               +A  I     E   +           +   L   +     +     +   S      
Sbjct: 3443 SEVLAEKISEEKVEESKKPEVKESEAKPDTAKALEKQSLDEQQLDAKTQKQAESAAEKNS 3502

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                    + EK S  +   +    V      P   K +E    +E  L     +  E  
Sbjct: 3503 EMAEVSEVFAEKISEEKVEESKKPDVKESEAKPDQAKTLEKQSLEEQQLDAKTQKQAESA 3562

Query: 616  QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             +          +   +    +   +         +     + +   S +      D   
Sbjct: 3563 SEKKSETAEVSEVLAEKISEEKVEESKKPEVKESEAKPDQAKALEKQSLEEQQ--LDAKT 3620

Query: 676  HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                E+ +   +E  +VS         E    S  P VK++
Sbjct: 3621 QKQAESASEKKSETAEVSEVLAEKISEEKVEESKKPEVKES 3661



 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 53/228 (23%), Gaps = 8/228 (3%)

Query: 494  RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
            +S+ +    +L           A    V             ++      E +    I+  
Sbjct: 4027 KSEKAEVSEVLAEKISEKKLEEAKQPEVKESEAKPDQAKALEK---RALEEQKRKKISEK 4083

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP-----K 608
               E         +    QA       +         +K ++     ++          +
Sbjct: 4084 KAEEAKQPEVKESETKSDQAKAFEKQALEEQKLEEKTEKQVKTKSYKQSEKAEVSGVLAE 4143

Query: 609  SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
              S +  ++    E      +  + +    +   +  +  V +         + S  +  
Sbjct: 4144 KISEKKAEEAKQPEVKESETKPDQAKALEEQKLEEKTEKQVKTKSDKKSEKAEVSEVLAE 4203

Query: 669  EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            + S+       +          D +         E +N       +K 
Sbjct: 4204 KISEKKPEEAKQPEVKESETKPDQAKALEEQKLEEKANKQVKTKSEKK 4251



 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 68/647 (10%), Positives = 193/647 (29%), Gaps = 38/647 (5%)

Query: 72   LEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQ 131
             E  PD  Q    ++Q+L ++   A+T  +A +      +    ++   E+++       
Sbjct: 3141 SEAKPD--QAKALEKQSLEEQQLDAKTQKQAESASEKKSETAEVSEVLAEKISEEKVEES 3198

Query: 132  ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGN 191
            +  E     A  D    +E  K    + +  K ++Q       K     + +++ E+   
Sbjct: 3199 KKPEVKESEAKPDQAKALE-KKSLEEQQLDAKTQKQAKSASEKKPETAEVSEVLAEKISE 3257

Query: 192  KGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRT 251
            +    +    +    S   P+ +K           +  K  K+     E  +    +   
Sbjct: 3258 ERVEESKKPEVK--ESEAKPDQAKALEKQSLEDQKLYAKTQKQAESTAEKKSETAEVSEV 3315

Query: 252  AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311
                 ++  ++   +  ++  +   + A       L  ++ +   +       +   E  
Sbjct: 3316 LAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAKSASEKKPETA 3375

Query: 312  VSGEK-GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ-LDSLHQTEVTLPSRG 369
               E    + +++ ++       +      D      +  +E Q LD+  Q +    +  
Sbjct: 3376 EVSEVLAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEEQKLDAKTQKQAESTAEK 3435

Query: 370  YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429
                 +   +++  ++  +       E    +   + A+ + +Q           +D   
Sbjct: 3436 KSETAEVSEVLAEKISEEKVEESKKPEVKESEAKPDTAKALEKQS----------LDEQQ 3485

Query: 430  MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489
            ++ K   ++     K S   + + V    IS     E   +  +  V ES  K       
Sbjct: 3486 LDAKTQKQAESAAEKNSEMAEVSEVFAEKISE----EKVEESKKPDVKESEAKPDQA--- 3538

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
                ++    +L   +   +   Q  + +      ++V   L  +     VE   +    
Sbjct: 3539 ----KTLEKQSLEEQQLDAKTQKQAESASEKKSETAEVSEVLAEKISEEKVEESKK---- 3590

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                   E+ +     ++   ++       ++ + +Q  +   + +     E    + + 
Sbjct: 3591 ------PEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAESASEKKSETAEVSEVLAEK 3644

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
             S E ++++   E      +  + +   ++   +          +   +          E
Sbjct: 3645 ISEEKVEESKKPEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAKSASEKKPETAEVSE 3704

Query: 670  PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                         +         + P  +    +    S  P VK++
Sbjct: 3705 VLAEKISEERVEESKKPEVKESEAKPDQAKALEKQVEESKKPEVKES 3751



 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 65/657 (9%), Positives = 174/657 (26%), Gaps = 37/657 (5%)

Query: 87   QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146
            + + +E        E    +            SLEE        ++ E E     N    
Sbjct: 3798 EKISEEKAEVFKQPEVKESEAKPDQAKALEKQSLEEQKLDEKTQKQGELEFD---NKSKK 3854

Query: 147  SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206
            +  E  +  +  D  K   +Q   ++ ++ +    V+   +++  K              
Sbjct: 3855 AEPEVKESEAKPDQAKALVKQALEEQKLEEKTEKQVKTKSDKKSEKAEVSEVLAEKISEK 3914

Query: 207  SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266
                    + +    K       +      + LE  A   V  ++   S      +   E
Sbjct: 3915 KPEEAKQPEAKESESKPDQAKALEKRALEEQKLEEKAKKQVKTKSEKKSEQAEVSEVLAE 3974

Query: 267  YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326
             +        +      +     +   L K+A+ +   ++ +E  V  +   +  K  + 
Sbjct: 3975 KISEKKPEEAKQPEVKDSETKSDQAKALEKQALEEQKLEEKTEKQVKTKSDKKSEKAEVS 4034

Query: 327  LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT---------- 376
             ++       +  E   P    S  +       +       +   I  +           
Sbjct: 4035 EVLAEKISEKKLEEAKQPEVKESEAKPDQAKALEKRALEEQKRKKISEKKAEEAKQPEVK 4094

Query: 377  EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436
            E+    D       +    +    +T  +   +  +Q    +++G++     + + ++  
Sbjct: 4095 ESETKSDQAKAFEKQALEEQKLEEKTEKQVKTKSYKQSEKAEVSGVLAEKISEKKAEEAK 4154

Query: 437  R-SVEKK---------LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486
            +  V++          L+E   +++   QV   S+    +  +  +   + E  ++    
Sbjct: 4155 QPEVKESETKPDQAKALEEQKLEEKTEKQVKTKSD---KKSEKAEVSEVLAEKISEKKPE 4211

Query: 487  CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546
                  ++   +         E+ L +     +   +          +K+    E     
Sbjct: 4212 EAKQPEVKESETKPDQAKALEEQKLEEKANKQVKTKS----------EKKPEQAEVSEVL 4261

Query: 547  GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
               I+     E         +    QA       +         +K ++     ++    
Sbjct: 4262 AEKISEKKAEEAKQPEVKDSETKSDQAKALEKQALEEQKLEEKTEKQVKTKSDKKSEKAE 4321

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
                  E I +   +EE+     K    +  +  A +       ++              
Sbjct: 4322 VSEVLAEKISE-KKAEEAKQPEVKESETKPDQAKALEEQKLEEKANKQVKTKSEKKPEQA 4380

Query: 667  YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +        +  +       E  +    P     +E        + +KT    + K
Sbjct: 4381 EVSEVLAEKISEKKPEEAKQPEVKESEAKPDQPKALEKQALEEQKLEEKTEKQVKTK 4437



 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/185 (8%), Positives = 48/185 (25%), Gaps = 2/185 (1%)

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +K+    E        I+               +  P QA       +          K 
Sbjct: 3784 EKKPETAEVSEVLAEKISEEKAEVFKQPEVKESEAKPDQAKALEKQSLEEQKLDEKTQKQ 3843

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
             E  + +++    P+ +  E   D   +     +  ++   +  ++  T        ++V
Sbjct: 3844 GELEFDNKSKKAEPEVKESEAKPDQAKALVKQALEEQKLEEKTEKQVKTKSDKKSEKAEV 3903

Query: 654  SS--IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
            S    + + +   +   +P    + +  +          +         +   + S    
Sbjct: 3904 SEVLAEKISEKKPEEAKQPEAKESESKPDQAKALEKRALEEQKLEEKAKKQVKTKSEKKS 3963

Query: 712  IVKKT 716
               + 
Sbjct: 3964 EQAEV 3968


>gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7]
 gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7]
          Length = 714

 Score = 45.7 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 23  NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
           N+  EL  E   KK   G +Y  KV RVE     AF++      GFL   +
Sbjct: 611 NKAVEL-IEKIVKKAQVGEVYDGKVVRVED--NYAFINLFDGTDGFLHISD 658


>gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
 gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
          Length = 718

 Score = 45.7 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 23  NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73
           N+  EL  E   KK   G +Y  KV RVE     AF++      GFL   +
Sbjct: 611 NKAVEL-IEKIVKKAQVGEVYDGKVVRVED--NYAFINLFDGTDGFLHISD 658


>gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 738

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 625 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 671

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVA 104
            + G +   +I         DY Q+       +L+     +       
Sbjct: 672 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 719


>gi|221505107|gb|EEE30761.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1433

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 40/158 (25%), Gaps = 4/158 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+GS               ++      +      +E       + + E  + ++ + E +
Sbjct: 49  ERGSRKGKRRCPESADRPGARELVTPADAAREDAEENGGSRAGAVNAEKTRPDVRTREES 108

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+  + + R +     H                         +  +  +        
Sbjct: 109 ARHREVDKPQSREQKGKKEHGEEGDKRAGRSSQGRRLLARAEGSCARESTKSEKNTQKAK 168

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E         +  E+           ++ R W+RR+
Sbjct: 169 GGEEE----EGHAQKEITEEEMKRKRREEEQRAWERRR 202


>gi|221057368|ref|XP_002261192.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|194247197|emb|CAQ40597.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 1123

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 26/102 (25%)

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            +     E       +++R+R    P    ++              ++  +         
Sbjct: 509 EKGGETQEGEDPNQNRKKRKRDEGEPNEQPNEQPNEQPNEQPNEQPNEQPNEQTNEQTNA 568

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             N   N       N   S  P   P    ++  +    K+T
Sbjct: 569 QSNAQSNEQSNEQTNEQPSENPNENPHDGENDRENATGTKRT 610


>gi|169825247|ref|YP_001692858.1| hypothetical protein FMG_1550 [Finegoldia magna ATCC 29328]
 gi|167832052|dbj|BAG08968.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 1837

 Score = 45.3 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 56/220 (25%), Gaps = 13/220 (5%)

Query: 508  EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIE 566
             +   +           + VV Y          E E  +   I +     L       I+
Sbjct: 1504 NKETGKLEVKEERTEPKNKVVEYGSKTDGEFKYESEKAYD--IIIRENPNLEAGKTNVIQ 1561

Query: 567  KGSP----------VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
            +G P              V+   K  ++ Q    +   + V +   + P   ++  ++  
Sbjct: 1562 EGKPGKTETTVKIENSKEVSRDTKTITEKQDKIIEIGTKNVCEIPPVKPEDPTKPGKEDP 1621

Query: 617  DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                 E+ T   ++   +  +  P     +              +   +   +P +    
Sbjct: 1622 TKPGKEDPTKPGKEDPTKPGKEDPTKPGKEDPTKPGKEDPTKPGEKDPENPTKPGEKDPE 1681

Query: 677  NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            N  + G     +         + P       +      +T
Sbjct: 1682 NPTKPGEKDPEKPGTPGENKPNEPGTPGEKPNEPGTPGET 1721


>gi|297465505|ref|XP_001788499.2| PREDICTED: repetin [Bos taurus]
          Length = 1102

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 40/162 (24%), Gaps = 6/162 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +             +     +  +      +DE         + ED Q     +  T
Sbjct: 813 DRQTHEDEQTRQRRDRQTHEDEETRQRRDRQTHEDEETRQRRDRPTREDQQTGQRRDRQT 872

Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               + R+RR R+           D     D  + Q     + +              + 
Sbjct: 873 REDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRPTREDQQTGQRRDRQTREDE 932

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +          T E E +    D    +    +R++
Sbjct: 933 QTRQRRDRQTH--EDEQTHEDEQTRQRQDRQTHEEDQNRRQQ 972



 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 4/158 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +             +     +  +      +DE        ++ ED +     +  T
Sbjct: 785 DRQTHKDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQRRDRQT 844

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               + R+RR R  P  +    G   D  + ++             D       +   H 
Sbjct: 845 HEDEETRQRRDR--PTREDQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQTHE 902

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +       P  T E + +    D   ++    ++R+
Sbjct: 903 DEQTRQRRDRP--TREDQQTGQRRDRQTREDEQTRQRR 938



 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 39/159 (24%), Gaps = 6/159 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +             +     +  +      +DE        ++ +D Q     +  T
Sbjct: 743 DRETHEDKQTPQRRDRQTHEDQQTGQRQDRQTHEDEQTRQRRDRQTHKDEQTRQRRDRQT 802

Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               + R+RR R+           D     D  + Q    D      E +          
Sbjct: 803 HEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQ--RRDRQTHEDEETRQRRDRPTRE 860

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                      +     T +     +  D   ++ R  +
Sbjct: 861 DQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQ 899


>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
 gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
          Length = 707

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 11/99 (11%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH-------PDYYQI 81
            E    +   G IY  KVTR+       AFV  GG + G +   +I         DY Q+
Sbjct: 612 IEDITAEVEVGRIYPGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120
                  +L+     +          T      P D + 
Sbjct: 669 GQEVPVKVLEIDRQGRIRLSMKEAVATEEASAQPQDSAE 707


>gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 711

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +                 P 
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPE 703

Query: 117 DHSLEEVA 124
             + E+  
Sbjct: 704 APASEQAE 711


>gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5]
 gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5]
          Length = 775

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 25  VEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72
           +E++  E +  K   G++Y  KV RVEP    AF++Y   + G L   
Sbjct: 692 IEDVGTEKKEVKPKVGDVYEGKVVRVEPY--GAFIEYAPGKVGLLHVS 737


>gi|194377482|dbj|BAG57689.1| unnamed protein product [Homo sapiens]
          Length = 1011

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                   +          AP    +      +    P+P S         + ++E+    
Sbjct: 841  DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 900

Query: 629  RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
             ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 901  PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 960

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   + + S P      +     S  P  ++    + 
Sbjct: 961  PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1000



 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
            +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 865  DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 924

Query: 625  TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 ++ +RRR        P       G V      +       +             +
Sbjct: 925  DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 984

Query: 680  ENGAHGFTENYDVSIPPVSTPEM 702
            E              P +  P+ 
Sbjct: 985  EPSRKPKRRRAADVEPSLPEPKR 1007



 Score = 41.1 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554  IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                L       E+                + T  +       PS D N++         
Sbjct: 840  ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 896

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
               K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 897  EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 950

Query: 661  DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                              +E  +          + P   P+   +      + +  R
Sbjct: 951  RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 1007


>gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 721

 Score = 45.3 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 607 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 653

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +                 P 
Sbjct: 654 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPE 713

Query: 117 DHSLEEVA 124
             + E+  
Sbjct: 714 APASEQAE 721


>gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 711

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116
            + G +   +I         DY Q+       +L+     +                 P 
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPE 703

Query: 117 DHSLEEVA 124
             + E+  
Sbjct: 704 APASEQAE 711


>gi|295087953|emb|CBK69476.1| transcription termination factor Rho [Bacteroides xylanisolvens
           XB1A]
          Length = 752

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/163 (8%), Positives = 37/163 (22%), Gaps = 1/163 (0%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
           ++    ++                 S   +  K    V   +       +   ++     
Sbjct: 63  NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122

Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              E+     KR+  R R+   A +  +   V+  +                +       
Sbjct: 123 AKAENATTAPKRKVGRPRKSADAEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPA 182

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +  A    ++   +       E     +    I K  +    
Sbjct: 183 QQPTAEKKAKSKPAAETNKPAAEPNKPVAEKKVIDKPQKKAAP 225


>gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae
           Ep1/96]
          Length = 732

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 619 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 665

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVA 104
            + G +   +I         DY Q+       +L+     +       
Sbjct: 666 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 713


>gi|194382726|dbj|BAG64533.1| unnamed protein product [Homo sapiens]
          Length = 992

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 822 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 881

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
            ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 882 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 941

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + + S P      +     S  P  ++    + 
Sbjct: 942 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 981



 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 846 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 905

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 906 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 965

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 966 EPSRKPKRRRAADVEPSLPEPKR 988



 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
               L       E+                + T  +       PS D N++         
Sbjct: 821 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 877

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
              K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 878 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 931

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                             +E  +          + P   P+   +      + +  R
Sbjct: 932 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 988


>gi|327288610|ref|XP_003229019.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase
            MLL-like [Anolis carolinensis]
          Length = 3817

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 43/161 (26%), Gaps = 3/161 (1%)

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             + K   +Q + +  +       A   +K  +   + E+     +SE  +          
Sbjct: 1093 KMRKCQNLQWMPSKAYLQKQAKAAKRKEKRSKPNEKKESQAGKGQSEPGQKAAPAQPPLP 1152

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
              G   +R      R+P+ +  + G    +   +  +        + +  +         
Sbjct: 1153 KEGQTPRRASDPVARKPSEEKGEEGPPPTLPDPKPALPSVTRKSGKQAAPSAPAPPVPAL 1212

Query: 684  HGFTENYDVSI---PPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   +      P     +      ++    K+ +   R
Sbjct: 1213 APGPPKKEAPKILVPAEPKKKAAPPQDAAIEQSKQKKITPR 1253


>gi|221046306|dbj|BAH14830.1| unnamed protein product [Homo sapiens]
          Length = 992

 Score = 45.3 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 822 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 881

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
            ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 882 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 941

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + + S P      +     S  P  ++    + 
Sbjct: 942 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 981



 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 846 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 905

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 906 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 965

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 966 EPSRKPKRRRAADVEPSLPEPKR 988



 Score = 41.1 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
               L       E+                + T  +       PS D N++         
Sbjct: 821 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 877

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
              K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 878 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 931

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                             +E  +          + P   P+   +      + +  R
Sbjct: 932 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 988


>gi|332359681|gb|EGJ37498.1| internalin protein [Streptococcus sanguinis SK355]
          Length = 859

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 11/191 (5%)

Query: 535 KRATIVEYEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           K   + E E +    IN       LA     I   +  +      +   SD+  P  +  
Sbjct: 664 KNLNLAENELKNLEGINQFRALDNLAVNKNKIITLALQEPNKTVTYINVSDNHIPKEELE 723

Query: 594 IECVWQDEALL---PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           +      +AL    P  +  S+++ +     +E     ++    +   +           
Sbjct: 724 LNENKIPKALAQHFPDVQGGSIDNNKPADAKDEKKEEPKQSEPNKADVQEKPASDKPASA 783

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLL--ENGAHGFTENYDVSIPPVSTPE---MESS 705
              +S Q   +D       P    N   +  EN +    E    +  P    E    E+ 
Sbjct: 784 E--ASNQGASNDKERPAGTPEADLNERTVDSENSSKPSLEEAPTAENPELKDELAQAENK 841

Query: 706 NSSSDPIVKKT 716
            +  DP  K+ 
Sbjct: 842 ENQKDPKDKEK 852


>gi|148557011|ref|YP_001264593.1| hypothetical protein Swit_4112 [Sphingomonas wittichii RW1]
 gi|148502201|gb|ABQ70455.1| hypothetical protein Swit_4112 [Sphingomonas wittichii RW1]
          Length = 333

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 71/227 (31%), Gaps = 28/227 (12%)

Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393
            + + +      F  +G    ++     E      G + ++ T A+  IDV+        
Sbjct: 125 PVRQLHAHQADAFEAAGWSELIEEAASGEAAFD-GGALHLSLTPAMSLIDVDG------- 176

Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453
                     L  A   AR +    L G I +D   +E K    +  + +   L +   R
Sbjct: 177 --WLDPAALALAGAAAAARMIVRHGLGGSIGIDLPTVEGKAARLAAAEAIDAILPQPFER 234

Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
             V   + FG L++ R+R R S+ E                 +  V  +    +      
Sbjct: 235 TAV---NGFGFLQIVRRRARPSLPERL--------------RRDPVGAAARALLRRAERT 277

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
             A    +     V+  +  +      E E R G  + +     LA 
Sbjct: 278 PGAGARTLTAAPAVIDRIAGRT-DWAAELERRLGARLVLRADAGLAI 323


>gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 712

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 23/113 (20%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109
            + G +   +I         DY Q+       +L+     +            
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|157818909|ref|NP_001100943.1| zinc finger, imprinted 1 [Rattus norvegicus]
 gi|149027638|gb|EDL83189.1| rCG32037 [Rattus norvegicus]
          Length = 578

 Score = 45.3 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 63/211 (29%), Gaps = 16/211 (7%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           DV +Y   ++   +   +      + +     L    +YI K   +  L         ++
Sbjct: 55  DVAVYFSQKEWQLLEPAQKDLYKDVMLENYGNLISVEYYIFKPKLITRLEQGIDLFAKEN 114

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-RRRRRRRRPATDH 644
             P   +  E            K+ +     +    + S  V +++ ++  +        
Sbjct: 115 DTPGDPQQGEAGVSRSDTSAGKKTGNNSTKAETRKPDNSKNVSQEKLKKADQGGGSQNLR 174

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG--------FTENYDVSIPP 696
            +    SD    QN          E    TN    EN +           +     S PP
Sbjct: 175 AEKTSKSDDRPSQNKEKSDSTSTTEAGKTTNPGNQENESAAPGTSSSQTPSTTAPQSTPP 234

Query: 697 VSTP-------EMESSNSSSDPIVKKTRWWK 720
             +        +  +++SS++P  K  R  K
Sbjct: 235 EKSTSGKDGQGKSPNTSSSTNPKRKPARQGK 265


>gi|118084313|ref|XP_416932.2| PREDICTED: similar to KIAA1802 protein [Gallus gallus]
          Length = 948

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 36/169 (21%), Gaps = 3/169 (1%)

Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           + V             E      A+     +            +     +     P    
Sbjct: 230 VAVSPEPRRHSPAVSPEPRRHSPAMSPEPRRHSPAVSPEPRRHSPAVSPEPRRYSPGVSP 289

Query: 610 ESLEDIQDNIVSEESTGV---IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
           E  +                    RR   + RRPA+           +           +
Sbjct: 290 EPKKPTPAVSPEPRRYSPAVSPEPRRHASQMRRPASASSPEIRRPAPAVSPESWRPGPTV 349

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             EP   T H + ++                S PE   S   + P  ++
Sbjct: 350 SPEPWRSTPHEMQKSSTVSPWAPKASIESRRSAPESRRSGPVASPESRR 398


>gi|242010968|ref|XP_002426229.1| hypothetical protein Phum_PHUM243450 [Pediculus humanus corporis]
 gi|212510292|gb|EEB13491.1| hypothetical protein Phum_PHUM243450 [Pediculus humanus corporis]
          Length = 1190

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 6/149 (4%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +                  D     +  +E  L +  ++S+++         +  + +
Sbjct: 680 NDKNTDEEVAPKKIKMNVMDIDDVASNIDSNEDSLSVVDNQSVKEETAVEGGGNTNEINK 739

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            RR R+R+ +  T           +S  + +    +   EP +I       N      E+
Sbjct: 740 PRRGRKRKNQNPTRCAIPVR----TSHDDGMSTDGEGSHEPDNIFCTKKESNLPKTEAED 795

Query: 690 YD--VSIPPVSTPEMESSNSSSDPIVKKT 716
            +      PV     ++  S ++   K+ 
Sbjct: 796 ANVKSDEKPVVETSQKNEVSENEGCKKEK 824


>gi|157825781|ref|YP_001493501.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
 gi|187611278|sp|A8GNL8|PNP_RICAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157799739|gb|ABV74993.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
          Length = 747

 Score = 45.3 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 32/175 (18%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y G + GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGTKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   EI                     A+   E V   +  GD+        +     A 
Sbjct: 650 VHISEI---------------------AEERIETVGSVLKQGDIVKVKLIGFDNKGK-AK 687

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
            + +  ++   S N    +NV + K  S  +     K++   ++   +   ++ +
Sbjct: 688 LTIKNADKDKSSNNPKQKNNVNNSKENSEPERRDSSKKRAWNEDNNSDTTEVITE 742


>gi|251766818|ref|ZP_04819825.1| 60S ribosomal protein L19 [Burkholderia mallei PRL-20]
 gi|243064763|gb|EES46949.1| 60S ribosomal protein L19 [Burkholderia mallei PRL-20]
          Length = 272

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/149 (7%), Positives = 35/149 (23%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+ +P         K  + S               +   P  K ++    +    ++   
Sbjct: 64  ERQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQA 123

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +++    +R+ P+             S +     +                +  +  
Sbjct: 124 PSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAK 183

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                     P +  +  S+   +    +
Sbjct: 184 RQAPSAKRQAPSAKRQAPSAKRQAPSAKR 212


>gi|302688077|ref|XP_003033718.1| hypothetical protein SCHCODRAFT_256406 [Schizophyllum commune H4-8]
 gi|300107413|gb|EFI98815.1| hypothetical protein SCHCODRAFT_256406 [Schizophyllum commune H4-8]
          Length = 681

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 35/155 (22%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + S  +    T  +  S +  PS  + +      ++  P P S            +    
Sbjct: 368 RFSRSEDRSETPTRAPSRTPTPSQGRALNGSATRKSPTPTPSSRKTPTPTSRTNGKNPAA 427

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +      R ++P     +    +           +      P   T            
Sbjct: 428 SRKSPTPAPRMQKPRAGSEEPQTNTPKPPRATKAATTGGRRGPPPSATKRKQKAPTTRKE 487

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            E    SI    +   +          KK   W  
Sbjct: 488 KEEDRRSIAHYPSISADEDAIPVWTQPKKAGNWDE 522


>gi|170087556|ref|XP_001875001.1| bromodomain containing protein [Laccaria bicolor S238N-H82]
 gi|164650201|gb|EDR14442.1| bromodomain containing protein [Laccaria bicolor S238N-H82]
          Length = 1181

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 52/166 (31%), Gaps = 8/166 (4%)

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
            ++ + I+   +   ++    V A  +      S  +      +     Q E + P   +E
Sbjct: 859  SIEVDIKHEGQEATVDMEPAVDADKSMEVVEQSLLEQNMEAPDQPVEEQLEPIQPSSPTE 918

Query: 611  SLEDIQDNIVSEESTG--------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
            +++ +     ++ +             +R++RR+ +  A +  D   V+  S    +   
Sbjct: 919  AVKPLTTRSANKAAQALVIEVLDTPATRRQKRRQGKDAAAEAPDGNAVAGPSRPTRISTA 978

Query: 663  SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
            S       +    +  +E+     +E           P     N  
Sbjct: 979  SRKARESMAQQEENEEVESDLSELSEAGSDGKEAERQPLSRGKNKK 1024


>gi|312865458|ref|ZP_07725685.1| conserved hypothetical protein [Streptococcus downei F0415]
 gi|311098976|gb|EFQ57193.1| conserved hypothetical protein [Streptococcus downei F0415]
          Length = 423

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 42/152 (27%), Gaps = 5/152 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSEESTGVI 628
             +            + A          + D  A     K ++ ++     +  +     
Sbjct: 249 AQEQPKEIAELEDKLAHAKVEADEAMADYNDRIAERKADKKKAHDEKMAKKLKAKQERED 308

Query: 629 RKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
           ++R +   +R+ R      +        +  ++V   S D              ++ A  
Sbjct: 309 KRREKVAQKRQEREEKEAKNPKKKAKKTAKAKDVAKKSSDTKTTDKSAKESTKAKSRAKK 368

Query: 686 FTENYDVSIPPVSTPEMESSN-SSSDPIVKKT 716
            ++  D         E E +  ++  P  K T
Sbjct: 369 VSQKVDQPADKTKESEAEKTKETAKKPETKGT 400



 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 54/214 (25%), Gaps = 22/214 (10%)

Query: 531 LLNQKRAT--IVEYEARFGVSINVVIGIELADKLFY--IEKGSPVQALVNTGHKVGSDSQ 586
           LLN +     +       G+ I VV         +   + +  P +          +  +
Sbjct: 210 LLNHQNGWASLCLILYMLGLYILVVYQATTQAAFYQDLLAQEQPKEIAELEDKLAHAKVE 269

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
           A     +      +         +     +     E       K  ++R+ R      + 
Sbjct: 270 ADEAMADYNDRIAERKADKKKAHDEKMAKKLKAKQEREDKRREKVAQKRQEREEKEAKNP 329

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
                  +  ++V   S D              ++ A   ++  D         E E + 
Sbjct: 330 KKKAKKTAKAKDVAKKSSDTKTTDKSAKESTKAKSRAKKVSQKVDQPADKTKESEAEKTK 389

Query: 707 -SSSDPIVKKTR-----------------WWKRR 722
            ++  P  K T+                   KRR
Sbjct: 390 ETAKKPETKGTKSNHSSSKKPKSKSKKKKGKKRR 423


>gi|195377218|ref|XP_002047389.1| GJ13409 [Drosophila virilis]
 gi|194154547|gb|EDW69731.1| GJ13409 [Drosophila virilis]
          Length = 1893

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 48/181 (26%), Gaps = 16/181 (8%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
                 K    ++        +   ++ S  +      +     +    +   +  + ++
Sbjct: 355 DPPKERKEKQRDRFKEKLRERSKESRIDSSKERLKGRSSERFREKKSERISERQRINSKE 414

Query: 615 IQD-NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
            ++ +   +       +     R+   + D  +     ++   +   + S+D   E S  
Sbjct: 415 RRECSNDKQRERSKDIRECSNNRQSERSKDRKEFPNDKNIERPKQRRESSYDKQRERSKD 474

Query: 674 TNHNLLENGAHGFTENYDVSIPPV-------------STPEMESSNSSSDPIVKKTRWWK 720
               + +       E  D SI                S  +  S ++    +  K     
Sbjct: 475 KR--IGDKPRERSKEKLDRSIEKQRERSKEKKRDSDQSKEKSTSRSTEKLSLESKKGRRD 532

Query: 721 R 721
           R
Sbjct: 533 R 533



 Score = 41.9 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 10/170 (5%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I+         ++       S+  S  + I    + E      +  S +  + +   + 
Sbjct: 380 RIDSSKERLKGRSSERFREKKSERISERQRINSKERRECSNDKQRERSKDIRECSNNRQS 439

Query: 624 STGVIRKR-------RRRRRRRRPATDHHDAGVVSDV--SSIQNVIDDSFDMYMEPSDIT 674
                RK         R ++RR  + D               +    +  D  +E     
Sbjct: 440 ERSKDRKEFPNDKNIERPKQRRESSYDKQRERSKDKRIGDKPRERSKEKLDRSIEKQRER 499

Query: 675 NHNLLENGAHGFTENYDVSIPPVS-TPEMESSNSSSDPIVKKTRWWKRRK 723
           +     +      ++   S   +S   +    + S+D   KK+R   R +
Sbjct: 500 SKEKKRDSDQSKEKSTSRSTEKLSLESKKGRRDRSNDGRSKKSRHRTRSR 549



 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 5/160 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +   N       + +    D+  E + +      I  S+     + +    E     
Sbjct: 344 ELSKDESNRCKDPPKERKEKQRDRFKEKLRERSKESRIDSSKERLKGRSSERFREKKSER 403

Query: 629 RKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVI-DDSFDMYMEPSDITNHNLLENGAH 684
              R+R   + RR  + D              N   + S D    P+D       +    
Sbjct: 404 ISERQRINSKERRECSNDKQRERSKDIRECSNNRQSERSKDRKEFPNDKNIERPKQRRES 463

Query: 685 GFTENYDVSI-PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + +  + S    +     E S    D  ++K R   + K
Sbjct: 464 SYDKQRERSKDKRIGDKPRERSKEKLDRSIEKQRERSKEK 503


>gi|323450249|gb|EGB06131.1| hypothetical protein AURANDRAFT_65834 [Aureococcus anophagefferens]
          Length = 1028

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 32/148 (21%), Gaps = 11/148 (7%)

Query: 564 YIEKGSPVQAL-VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
            +E      A        +      P   K  +    D+           +       ++
Sbjct: 615 ALEAFEAATAPPEPEVKPLLVLRDYPDLPKANQPAANDDDE---DAPAPKKRGPKKKKAD 671

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN----- 677
           E     ++  +++       +              N  +D+      P      +     
Sbjct: 672 EEDAPKKRGPKKQAANEE--EDAAPKKRGPKKKAANEEEDAAPKKRGPKKKAERDDDAPA 729

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESS 705
             + GA    E+          P+    
Sbjct: 730 KKKRGAKAPAEDEAPPAKKRGPPKKRED 757


>gi|297472686|ref|XP_002686117.1| PREDICTED: repetin-like [Bos taurus]
 gi|296489627|gb|DAA31740.1| repetin-like [Bos taurus]
          Length = 1066

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 40/162 (24%), Gaps = 6/162 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +             +     +  +      +DE         + ED Q     +  T
Sbjct: 813 DRQTHEDEQTRQRRDRQTHEDEETRQRRDRQTHEDEETRQRRDRPTREDQQTGQRRDRQT 872

Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               + R+RR R+           D     D  + Q     + +              + 
Sbjct: 873 REDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRPTREDQQTGQRRDRQTREDE 932

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +          T E E +    D    +    +R++
Sbjct: 933 QTRQRRDRQTH--EDEQTHEDEQTRQRQDRQTHEEDQNRRQQ 972



 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 4/158 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +             +     +  +      +DE        ++ ED +     +  T
Sbjct: 785 DRQTHKDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQRRDRQT 844

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               + R+RR R  P  +    G   D  + ++             D       +   H 
Sbjct: 845 HEDEETRQRRDR--PTREDQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQTHE 902

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +       P  T E + +    D   ++    ++R+
Sbjct: 903 DEQTRQRRDRP--TREDQQTGQRRDRQTREDEQTRQRR 938



 Score = 41.9 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 39/159 (24%), Gaps = 6/159 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +             +     +  +      +DE        ++ +D Q     +  T
Sbjct: 743 DRETHEDKQTPQRRDRQTHEDQQTGQRQDRQTHEDEQTRQRRDRQTHKDEQTRQRRDRQT 802

Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               + R+RR R+           D     D  + Q    D      E +          
Sbjct: 803 HEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQ--RRDRQTHEDEETRQRRDRPTRE 860

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                      +     T +     +  D   ++ R  +
Sbjct: 861 DQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQ 899


>gi|194390556|dbj|BAG62037.1| unnamed protein product [Homo sapiens]
          Length = 1043

 Score = 45.3 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                   +          AP    +      +    P+P S         + ++E+    
Sbjct: 873  DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 932

Query: 629  RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
             ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 933  PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 992

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   + + S P      +     S  P  ++    + 
Sbjct: 993  PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1032



 Score = 43.4 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
            +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 897  DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 956

Query: 625  TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 ++ +RRR        P       G V      +       +             +
Sbjct: 957  DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1016

Query: 680  ENGAHGFTENYDVSIPPVSTPEM 702
            E              P +  P+ 
Sbjct: 1017 EPSRKPKRRRAADVEPSLPEPKR 1039



 Score = 40.7 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554  IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                L       E+                + T  +       PS D N++         
Sbjct: 872  ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 928

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
               K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 929  EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 982

Query: 661  DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                              +E  +          + P   P+   +      + +  R
Sbjct: 983  RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 1039


>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 495

 Score = 45.3 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 13/168 (7%)

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           G +I+ V   E A +LF IE+        +T      + + P    +   +   +     
Sbjct: 341 GKAISFVSEDE-ASELFAIERLIQKILPRHTLEGFEPEMKVPESRLDSRPIKAKKPKKTH 399

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
                 +D Q +  +        K   RR      T++ D     +  + +    D    
Sbjct: 400 APRVEHKDGQRSGENRSGHKQGAKPAPRRN-----TENKDGAAKKEGGNAKKRPTDGG-- 452

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             +P    N     NG++  +          + P  +    +  P+ +
Sbjct: 453 --KPRSKGNGENRGNGSNFGSGK---PKSDATKPRRQGPRPARKPVAQ 495


>gi|325120841|emb|CBZ56396.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1211

 Score = 45.3 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 36/154 (23%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +       +     +  S         + +      K       +++   +E     
Sbjct: 736 EQEREEKAEVKRSRKRREKESRASRGSSGGKRDEKKRSEKKAKERRDKESGHEKERGKSR 795

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K R R R+R   T   +        S+ +   +         D  +    ++G      
Sbjct: 796 EKERGRERKRDRKTSSDEKRREDKSKSLHSSAVEDQKKKTRTGDRESRKARKSGRKRSRS 855

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                       E    +        ++   +RR
Sbjct: 856 GERGKGEKGDRREAAKRDRERSRKDDRSEHKRRR 889



 Score = 40.7 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 4/135 (2%)

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           +K  E             +        ++  +E       +R R+RR + +     +   
Sbjct: 706 EKGDEVEEGTRQGSRQEGAARRRSRSPSVQEQEREEKAEVKRSRKRREKESRASRGSSGG 765

Query: 651 SDVSSI---QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
                    +   +          +       E G     +    S       + +S +S
Sbjct: 766 KRDEKKRSEKKAKERRDKESGHEKERGKSREKERGRERKRDRKTSSDEKRREDKSKSLHS 825

Query: 708 SS-DPIVKKTRWWKR 721
           S+ +   KKTR   R
Sbjct: 826 SAVEDQKKKTRTGDR 840



 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 46/177 (25%), Gaps = 15/177 (8%)

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
             + +    E+ + V+       K    S+  S  K  E    ++        ES  + +
Sbjct: 731 SPSVQEQEREEKAEVKRSRKRREKESRASRGSSGGKRDEKKRSEKKAKERRDKESGHEKE 790

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                E+  G  RKR R+        +     + S     Q     + D     +  +  
Sbjct: 791 RGKSREKERGRERKRDRKTSSDEKRREDKSKSLHSSAVEDQKKKTRTGDRESRKARKSGR 850

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEM---------------ESSNSSSDPIVKKTRW 718
               +G  G  E  D         E                + S       VKK   
Sbjct: 851 KRSRSGERGKGEKGDRREAAKRDRERSRKDDRSEHKRRRTEKDSREKRRRDVKKRDD 907


>gi|326921540|ref|XP_003207015.1| PREDICTED: WD repeat-containing protein 60-like [Meleagris
           gallopavo]
          Length = 927

 Score = 45.3 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 47/229 (20%), Gaps = 28/229 (12%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLL-------NQKRATIVEYEARFGVSINVVIGIE 557
           R +                  ++  +L        N+ R      E +      V   I 
Sbjct: 4   RWLRSGACHRRTKEDTWK-SEELRKHLRASQLESQNEDRKHR---EKKLQKE-KVGHDIG 58

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES---LED 614
                +  ++G   +        V  D       +      QD         ES    E 
Sbjct: 59  THKDEYK-DRGKSKERTRERLRSVERDRDKMRERRKERHRDQDRERHQDKLKESSLEKER 117

Query: 615 IQDNIVSEESTGVIRKRRRRR--------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
                  +  +     +  +R        +    + +  D G        ++ +      
Sbjct: 118 YSVPKDKDRESNREHDKMHKRHEIKQTDMQNNLKSFEGRDKGHHRRREKSRHRLGKDRLS 177

Query: 667 YMEPSDITNHNLLENGAHGFTENY----DVSIPPVSTPEMESSNSSSDP 711
                        E      +       D   P      ++S  +    
Sbjct: 178 KERSHKSYKKEEEERHKSKRSTEEYSHGDRGQPAEDRKRVKSGENERKK 226


>gi|324499471|gb|ADY39774.1| Myosin-9 [Ascaris suum]
          Length = 2074

 Score = 45.3 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 82/678 (12%), Positives = 209/678 (30%), Gaps = 54/678 (7%)

Query: 69   LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN---DHSLEEVAP 125
            L  LE   D  +I  S  +A  ++    Q + +   +++      +         E    
Sbjct: 1124 LASLEEQLDGERISRSQSEAEKRQIAAEQREMKDAMEELQKKLYDLNTILVKREEELFQA 1183

Query: 126  IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185
            +A + +E  +  I+       S          E+      +    +         L Q +
Sbjct: 1184 LAKYDEEQAKGQILVKQLKNASAELQEAKEDIENERSLRMKSERGKRDYMEELEALKQEL 1243

Query: 186  KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245
             E +    A V        ++ +L     K    S+  +     +  ++ A+ ++     
Sbjct: 1244 LESQDKTQANVEMRAEREKQFQLLNMGFKKELEESKTSSELKINELKQKYAKQIDALNDQ 1303

Query: 246  GVILRT--AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH-------LVYEEGNLIK 296
               L+     + ++K  I+++      L +  +   +++           L ++      
Sbjct: 1304 IDQLKRLKHQSEKSKELIEKELSEKNMLLEQCQGAKVDAERKRKVAESGLLEWQTKANDV 1363

Query: 297  RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356
               R      +S+  V   + +   +     +     ++V   +       + G+E    
Sbjct: 1364 ELERASLANALSKAQVEIGQLHSSLESKEDDIASLQKKVVDLSDQLTESAEQLGVEKSQK 1423

Query: 357  SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH---CIEDTALQTNLEAAEEIARQ 413
             + Q +V           + E  V  D    R   E     ++   +    + +EE  +Q
Sbjct: 1424 GVLQEKVRDLENEL----EAEREVREDDEGTRQKMEKEIVNLKQQLMDLKSKGSEEALKQ 1479

Query: 414  LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM--SRQR 471
                          +  + +   + +E+   +  + ++A+ ++   +    +E+   R +
Sbjct: 1480 AEESR-------KKLCKDLEACQKQLEEAQADRQRSEKAKKKLMQENEDARVELDNLRAQ 1532

Query: 472  IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
             R    +         +  G   +  +    + + V E   +             ++   
Sbjct: 1533 YREMEKKQRKFDQQLAEERGKTATAIAERDQLAQDVRERGSK-----------VLIMAKE 1581

Query: 532  LNQKRATIVEYEARFGVSINVVIGIELADKL------FYIEKGSPVQALVNTGHKVGSDS 585
            +++ R  + E E R   S+ + +   +  K         +E+   +        K     
Sbjct: 1582 MDEMRGCLEELE-RLKRSLQLELDNLMTTKDDAGRSAHELEREKRLLEAEVAKMKEEILE 1640

Query: 586  QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR-RPATDH 644
               SY  + +   + E  L   K++  + +       E       +RR  +RR R   D 
Sbjct: 1641 LEDSYQSSEDARLRLEVNLQTVKNDLEKAVAVKEQENEE------KRRNAQRRVRELEDE 1694

Query: 645  HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             DA   +  S++Q       ++    +D+       +           S+  +   E+E 
Sbjct: 1695 LDAERRTRASAVQQKKKMEGELNKASADLDALTRQRDDLSRQLRKVTQSLKDLQQ-ELEE 1753

Query: 705  SNSSSDPIVKKTRWWKRR 722
              +  +  + + R   R+
Sbjct: 1754 MRTEKETTILRARDLDRK 1771


>gi|221485413|gb|EEE23694.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 477

 Score = 45.3 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 31/133 (23%)

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
               S     +   + EA     K+   +        +       K++RRR+      + 
Sbjct: 290 PDEKSGSSESKREKKREAKACDEKASETQQAAQKSGEDREKNGSAKKKRRRQEAGDGRES 349

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                    S  Q     +                + G     E  D      ST    +
Sbjct: 350 DSGSSRDSESRAQESRKATSKSEEGAVVEKEKKKAKRGNAADREATDCEPSRASTKSQRA 409

Query: 705 SNSSSDPIVKKTR 717
           S    +    K +
Sbjct: 410 SKPEEEETSGKEK 422


>gi|218441061|ref|YP_002379390.1| von Willebrand factor A [Cyanothece sp. PCC 7424]
 gi|218173789|gb|ACK72522.1| AAA ATPase containing von Willebrand factor type A (vWA) domain
           [Cyanothece sp. PCC 7424]
          Length = 1568

 Score = 45.3 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 49/171 (28%), Gaps = 2/171 (1%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
           V   +      + +   IE+ S     +          +     +       +  L    
Sbjct: 76  VQPTLKENPNSSQETIDIEQNSQ-PIKIQKLCSTCQQEKEEKILQPQPLTQANVPLESET 134

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ-NVIDDSFDM 666
           ++E+ +  Q           +    + R  +   +++    V ++++ I+     +  + 
Sbjct: 135 QTENQQAEQPKQTENNQELNLENAPKTRENKSLNSNNPPETVNNNLAKIKAEKEQNQPEK 194

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             E SD    +           N + S P  S  +  S          +T+
Sbjct: 195 APENSDKKRESDSSKSQEDSPSNANQSSPNTSENKTPSPEKREKDKPLETK 245


>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
          Length = 708

 Score = 45.3 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 11/100 (11%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH-------PDYYQI 81
            E    +   G +Y  KVTR+       AFV  GG + G +   +I         DY Q+
Sbjct: 612 IEDITAEVEVGRVYQGKVTRIVDFG---AFVAIGGGKEGLVHISQIAEKRVEKVTDYLQL 668

Query: 82  PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121
                  +L+     +                     S E
Sbjct: 669 GQEVPVKVLEIDRQGRIRLSIKEAVSAEKPAETETQISAE 708


>gi|20137613|sp|O15061|SYNEM_HUMAN RecName: Full=Synemin; AltName: Full=Desmuslin
          Length = 1565

 Score = 45.0 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++          + +D  
Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           +      +  + +         +        ++   +   +       +  +  +  + D
Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577


>gi|126326697|ref|XP_001377564.1| PREDICTED: similar to KIAA1604 protein [Monodelphis domestica]
          Length = 935

 Score = 45.0 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 8/164 (4%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPS----YDKNIECVWQDEALLPIPKSESLEDI 615
                +EK               +  +        + + +   + ++       +SL+D 
Sbjct: 772 HMENKMEKRQQETRTEGERRSEKNTDRNLRNPVWRENSSKYASERDSTTERNNYKSLKDR 831

Query: 616 QDNI-VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS--SIQNVIDDSFDMYMEPSD 672
             +  +  E+     K+RR  RR   + +  +     D      +            P+ 
Sbjct: 832 DHDKYIDPENKSDDTKKRRGERRNSFSENEREKHRNKDSENHRRKERSKSRERNRNNPNS 891

Query: 673 ITNHNLLENGAHGFTENYDVSIP-PVSTPEMESSNSSSDPIVKK 715
               +   NGA   +E +      P  +         + P  +K
Sbjct: 892 RDEQDRRWNGAEKESEKHSRRSEHPRESRRNHDRRRENSPARRK 935


>gi|119622637|gb|EAX02232.1| desmuslin, isoform CRA_c [Homo sapiens]
          Length = 1534

 Score = 45.0 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++          + +D  
Sbjct: 381 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 435

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           +      +  + +         +        ++   +   +       +  +  +  + D
Sbjct: 436 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 495

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 496 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 546


>gi|194377228|dbj|BAG63175.1| unnamed protein product [Homo sapiens]
          Length = 1076

 Score = 45.0 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 7/153 (4%)

Query: 576  NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
            +          AP    +      +    P+P S         + ++E+     ++ +R+
Sbjct: 913  SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQ 972

Query: 636  RRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTE 688
            R       P       G V      +       +    EP      +             
Sbjct: 973  RAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAA 1032

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            + + S P      +     S  P  ++    + 
Sbjct: 1033 DVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1065



 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
            +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 930  DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 989

Query: 625  TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                 ++ +RRR        P       G V      +       +             +
Sbjct: 990  DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1049

Query: 680  ENGAHGFTENYDVSIPPVSTPEM 702
            E              P +  P+ 
Sbjct: 1050 EPSRKPKRRRAADVEPSLPEPKR 1072



 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%)

Query: 554  IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                L       E+                + T  +       PS D N++         
Sbjct: 905  ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 961

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
               K    +  +   +        R+       R+ +RR A D      V   S      
Sbjct: 962  EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 1015

Query: 661  DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                              +E  +          + P   P+   +      + +  R
Sbjct: 1016 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 1072


>gi|156372821|ref|XP_001629234.1| predicted protein [Nematostella vectensis]
 gi|156216229|gb|EDO37171.1| predicted protein [Nematostella vectensis]
          Length = 1955

 Score = 45.0 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 53/230 (23%), Gaps = 13/230 (5%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI-NV 552
           R    +A +  R                         +L + +         +   I  +
Sbjct: 53  RFDEWIAFNSERLRPHRGGHLEHKEEKTQQEWRNGDRILAKWQDC-----KFYPAKILKI 107

Query: 553 VIGIELAD---KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                        F            N+      D +               A     ++
Sbjct: 108 NTDGSFEVLFYDGFKKTVQRSNIKPDNSKKTFPVDKELAMEKSERIERRAKLAAGRAERA 167

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                    I         R+ R RR +            +S  +     + ++ ++ ++
Sbjct: 168 RKRSKELAGISPS-PPTSKRRERGRRTKAEEEMGMTSESSMSSPAEPPQEVPEADEVPVD 226

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS---SDPIVKKT 716
            +++         A    E          TPE+E+S      S+   K+ 
Sbjct: 227 TANMATDQTEREKAPETMETSQPITQNAKTPEIETSAHKETWSEKQEKED 276


>gi|112382237|ref|NP_663780.2| synemin isoform A [Homo sapiens]
 gi|119622636|gb|EAX02231.1| desmuslin, isoform CRA_b [Homo sapiens]
          Length = 1565

 Score = 45.0 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++          + +D  
Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           +      +  + +         +        ++   +   +       +  +  +  + D
Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577


>gi|221482032|gb|EEE20398.1| hypothetical protein TGGT1_063920 [Toxoplasma gondii GT1]
          Length = 1421

 Score = 45.0 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 32/159 (20%), Gaps = 5/159 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV-- 627
           P         K        +       +            E+       + +E++ G   
Sbjct: 44  PASHGERESRKGKRRCPESADRPGARELVTPADAAREDAEENGGSRAGAVNAEKTRGDVR 103

Query: 628 --IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY-MEPSDITNHNLLENGAH 684
                 R R   +  + +        +    +                       E+   
Sbjct: 104 TLEESERHREVDKPQSREQKGKKEHGEEGDKRAGRSSQGRRLLARAEGSCARESTESEKK 163

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                        +  E+           ++ R W+RR+
Sbjct: 164 TQKAKGGEEEEGHAQKEITEEEMKRKRREEEQRAWERRR 202


>gi|237835507|ref|XP_002367051.1| hypothetical protein TGME49_046630 [Toxoplasma gondii ME49]
 gi|211964715|gb|EEA99910.1| hypothetical protein TGME49_046630 [Toxoplasma gondii ME49]
 gi|221506274|gb|EEE31909.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 477

 Score = 45.0 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 31/133 (23%)

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
               S     +   + EA     K+   +        +       K++RRR+      + 
Sbjct: 290 PDEKSGSSESKREKKREAKACDEKASETQQAAQKSGEDREKNGSAKKKRRRQEAGDGRES 349

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                    S  Q     +                + G     E  D      ST    +
Sbjct: 350 DSGSSRDSESRAQESRKATSKSEEGAVVEKEKKKAKRGNAADREATDCEPSRASTKSQRA 409

Query: 705 SNSSSDPIVKKTR 717
           S    +    K +
Sbjct: 410 SKPEEEETSGKEK 422


>gi|195146210|ref|XP_002014080.1| GL23047 [Drosophila persimilis]
 gi|194103023|gb|EDW25066.1| GL23047 [Drosophila persimilis]
          Length = 1809

 Score = 45.0 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 54/225 (24%), Gaps = 13/225 (5%)

Query: 492  YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
             ++        I R+     ++++   +     +    ++  Q    I E E        
Sbjct: 1297 TVKPARVAPHEITRAPLREPMKFS---VATPLPAYRDGFMREQPVLVIDEQEEEEDDDQI 1353

Query: 552  VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
            V+  +++      IE+  P   +             P     I     +         E 
Sbjct: 1354 VIDEVQMVINEERIEEVRPQVVVQLEPKIEPKQGTQPKRRDTIPRSKTEIKGEHKVIKEE 1413

Query: 612  LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                Q   + +       K +       P      A     +   + V     +    P 
Sbjct: 1414 PRPKQRERILKRQDETTAKIKE----TMPKQKETTAKHRETIPKAKEVKYTLKETKPTPK 1469

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +    +         T+       P    +       + P  K+T
Sbjct: 1470 ETKILSKDPKPTRKETKPPPKDTKPNPKEK------KAKPTPKET 1508


>gi|304388004|ref|ZP_07370175.1| IgA1 protease [Neisseria meningitidis ATCC 13091]
 gi|304337952|gb|EFM04091.1| IgA1 protease [Neisseria meningitidis ATCC 13091]
          Length = 1777

 Score = 45.0 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521
            +    +I                 A   + Q + A  + R   E   +            
Sbjct: 998  QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1057

Query: 522  HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                ++      ++  +  E   R               +   +     V+A        
Sbjct: 1058 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1107

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640
                      K                +E     +        T   + +R R+RR  P 
Sbjct: 1108 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1166

Query: 641  ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                A+               NV        +           E  A    E    +   
Sbjct: 1167 DYMAASQDRPKRRGHRSVEQNNVEIAQAQAELVRRQQEERKAAELLAKQRAEAEREAQAL 1226

Query: 697  VSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +  + E+  +         R    RK
Sbjct: 1227 AARRKAEAEEAKRQAAELAHRQEAERK 1253


>gi|237836893|ref|XP_002367744.1| hypothetical protein TGME49_005120 [Toxoplasma gondii ME49]
 gi|211965408|gb|EEB00604.1| hypothetical protein TGME49_005120 [Toxoplasma gondii ME49]
          Length = 1413

 Score = 45.0 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 41/158 (25%), Gaps = 4/158 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+GS               ++      +      +E       + + E  + ++ + E +
Sbjct: 49  ERGSRKGKRRCPESADRPGARELVTPADAAREDAEENGGSREGAVNAEKTRGDVRTLEES 108

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+  + + R +     H                         +  +  +  +     
Sbjct: 109 ERHREVDKPQSREQKGKKEHGEEGDKRAGRSSQGRRLLAGTEGSCARESTESEKKTQKAK 168

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E         +  E+           ++ R W+RR+
Sbjct: 169 GGEEE----EGHAQKEITEEEMKRKRREEEQRAWERRR 202


>gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
          Length = 734

 Score = 45.0 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 20/111 (18%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 634 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 683

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
              DY Q+       +L+     +                 P   + E+  
Sbjct: 684 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQGE 734


>gi|157120255|ref|XP_001653573.1| hypothetical protein AaeL_AAEL001570 [Aedes aegypti]
 gi|108883086|gb|EAT47311.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1215

 Score = 45.0 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 44/199 (22%), Gaps = 26/199 (13%)

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
           R ++  +     +S+     +             P                 P   K   
Sbjct: 299 RRSLAYW-----ISVLFEPEVTSEPN------AEPGAHPEPEPESTSEPEPEPKSPKAEP 347

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV------ 649
                 A      +   E    +    ES        +  ++ + AT      +      
Sbjct: 348 EPEPAAAEHEPEVASEPEPESTSEPEPESKAEPSAEPKSNKKSKRATSGKCFNLWFSHIL 407

Query: 650 ------VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
                 + +++   N           P            A    ++   S P    P+ E
Sbjct: 408 VLFFALLCNITVSFNKTFSIPFPDSHPPASEPEPESSPKAEPEPKSEPASEP---EPKAE 464

Query: 704 SSNSSSDPIVKKTRWWKRR 722
           ++        KK   W  R
Sbjct: 465 TTAKPKPAAQKKANPWTPR 483


>gi|121706172|ref|XP_001271349.1| Mis12-Mtw1 domain protein [Aspergillus clavatus NRRL 1]
 gi|119399495|gb|EAW09923.1| Mis12-Mtw1 domain protein [Aspergillus clavatus NRRL 1]
          Length = 581

 Score = 45.0 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/174 (7%), Positives = 35/174 (20%), Gaps = 10/174 (5%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             + F   +    ++  +       +      +             P  K   ++     
Sbjct: 80  DIEGFQFTRLPSKKSRPSVDAVPVPEKPDAGTENPPPQQRTPRRGRPPKKKPEVQPEGGA 139

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                        +R+ R     TD          +       D  +   +         
Sbjct: 140 GTEVREKRAEGASKRQTRGSMRGTDAAAETQSESATRPSTRKRDDIESVPKEKKRRKGRP 199

Query: 679 LENGAHGFTENYDV----------SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            ++                     ++P   TP ++ +         +     RR
Sbjct: 200 SKSDVQERNGFVSPEPQQSGTAKITLPLADTPVIQRNKEMRKEAKGEKGSKSRR 253


>gi|302658311|ref|XP_003020861.1| SAP domain protein [Trichophyton verrucosum HKI 0517]
 gi|291184728|gb|EFE40243.1| SAP domain protein [Trichophyton verrucosum HKI 0517]
          Length = 725

 Score = 45.0 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 36/151 (23%), Gaps = 1/151 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                 V       +    P  +   E V +        +S +     D    +E T   
Sbjct: 160 ELAVEDVTPAQPAPAPEPEPVKEPAQEPVQEPVQEPVKDESVNKTPSTDVEAIKEDTDES 219

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           RKRRRR +   P+               Q       ++  E             A     
Sbjct: 220 RKRRRRSQTPPPSPRSIALKKARLEEERQQSRSTQEEIKAEKRKEEQEAPAAALAIAEPP 279

Query: 689 NYDVSIP-PVSTPEMESSNSSSDPIVKKTRW 718
             D  +     TP        ++    K R 
Sbjct: 280 ARDTDVEMKEGTPPAPEPKQETEEDESKDRV 310


>gi|20521884|dbj|BAA92565.2| KIAA1327 protein [Homo sapiens]
          Length = 1804

 Score = 45.0 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 65/255 (25%), Gaps = 29/255 (11%)

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            +G+  ++   + S  +       +  A  I  H+       +  ++R        +  +S
Sbjct: 1473 SGFRTNEEIHSESYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMPKRKRKQHYLS 1532

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN---------------- 593
                             +    Q          +  +     +                 
Sbjct: 1533 SEDEPDDN---PDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPKTSSETNSTTSRVM 1589

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATD 643
             E      +     K E  +D       E+   +I+++R R R          +    TD
Sbjct: 1590 EEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKMKDDSKTD 1649

Query: 644  HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
                 V    SS +  +  + +   E +++   ++  +                    + 
Sbjct: 1650 TGIVTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVTSVRRRGRKPKRSLT 1709

Query: 704  SSNSSSDPIVKKTRW 718
             S+ +     ++ R 
Sbjct: 1710 VSDDAESSEPERKRQ 1724


>gi|317032329|ref|XP_001394641.2| ubiquitin-protein ligase Ufd4 [Aspergillus niger CBS 513.88]
          Length = 1809

 Score = 45.0 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 44/159 (27%), Gaps = 15/159 (9%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I + +   A  +        S A +   +     +              D   +   + 
Sbjct: 4   RITRSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPAR--------RDRSVDAPEQS 55

Query: 624 STGVIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           +     ++ +R+RR       + PAT          +S        + D     +     
Sbjct: 56  NPSSSPRKSKRQRRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPAS 115

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               + +   +++   +  P    + +  + +S   + K
Sbjct: 116 RRKSSRSGKVSQDNASAAQPSPRRQKKRPSRASPDTIMK 154



 Score = 41.1 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 16/141 (11%)

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
                       S        N  +  +    RK   RR R   A +  +       S  
Sbjct: 7   RSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPARRDRSVDAPEQSNPSSSPRKSKR 66

Query: 657 QNVIDDSFDMYMEPSDITN--------HNLLENGAHGFTENYDVSIPPVSTPE------- 701
           Q     S      P+                 +       + + + PP S  +       
Sbjct: 67  Q-RRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPASRRKSSRSGKV 125

Query: 702 MESSNSSSDPIVKKTRWWKRR 722
            + + S++ P  ++ +    R
Sbjct: 126 SQDNASAAQPSPRRQKKRPSR 146


>gi|261289595|ref|XP_002604774.1| hypothetical protein BRAFLDRAFT_70623 [Branchiostoma floridae]
 gi|229290102|gb|EEN60784.1| hypothetical protein BRAFLDRAFT_70623 [Branchiostoma floridae]
          Length = 741

 Score = 45.0 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 53/172 (30%), Gaps = 9/172 (5%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
               +LA +   I      ++ V    K     +    D++      DE      K +  
Sbjct: 75  KAMEDLAAENSAIT-DKASKSSVPGSRKRTPSRKKMEADQSGAASSDDEPCPKKGKPKKN 133

Query: 613 EDIQDNIVSEESTGVIRKRR---RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
           ++   +   +       KR+    R    +   +  +       +  ++ I+ +  +  E
Sbjct: 134 KEESSSKEGKGDKETKGKRKNGSPRENSGKGKNETAEEDKRRKKAQAESGIEATMSIIAE 193

Query: 670 PSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            ++       ++E       E    +    ST   + +++ +    K+T   
Sbjct: 194 MAEDKGDEVVVVEPSQESSKEPSTKNTKETSTKNTKETSTKN---TKETSTQ 242


>gi|145522792|ref|XP_001447240.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414740|emb|CAK79843.1| unnamed protein product [Paramecium tetraurelia]
          Length = 644

 Score = 45.0 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 48/191 (25%), Gaps = 10/191 (5%)

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
           +    + E      I ++   +L       E+    Q           + Q     +   
Sbjct: 358 KQAFKQIEILIDTKIELI--EKLKQAE--EERLKAEQEKQKAEEDARKEKQERQKAEKER 413

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVS 654
              + +A+    + +  E        E       ++R   +RR        +        
Sbjct: 414 QKAEQDAIKEKQERQKAEQDAIKEKQERQKAEEERQRTEEKRRAEENRWAEEKRRAEQDR 473

Query: 655 SIQNVIDDSFDMY--MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
             Q    DS +    ++   I              EN    +   S   +E         
Sbjct: 474 QRQQTEIDSLNRQYKLQEEKIRMQQRNLEEQQTKMENQQKQMQQESKRNLEE---QQRRE 530

Query: 713 VKKTRWWKRRK 723
           ++  +  +R +
Sbjct: 531 IENKQIQERER 541


>gi|218767823|ref|YP_002342335.1| IgA1 protease [Neisseria meningitidis Z2491]
 gi|121051831|emb|CAM08137.1| IgA1 protease [Neisseria meningitidis Z2491]
          Length = 1773

 Score = 45.0 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521
            +    +I                 A   + Q + A  + R   E   +            
Sbjct: 986  QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1045

Query: 522  HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                ++      ++  +  E   R               +   +     V+A        
Sbjct: 1046 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1095

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640
                      K                +E     +        T   + +R R+RR  P 
Sbjct: 1096 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1154

Query: 641  ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                A+               NV        +           E  A    E    +   
Sbjct: 1155 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1214

Query: 697  VSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +  + E+  +         R    RK
Sbjct: 1215 AARRKAEAEEAKRQAAELAHRQEAERK 1241


>gi|315050570|ref|XP_003174659.1| DNA ligase [Arthroderma gypseum CBS 118893]
 gi|311339974|gb|EFQ99176.1| DNA ligase [Arthroderma gypseum CBS 118893]
          Length = 890

 Score = 45.0 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 34/148 (22%), Gaps = 6/148 (4%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +        V    Q P   K +          PI   +   +I       ES   
Sbjct: 41  SKNDETKDGDEESVDQAPQTP--RKQVGRAGSKRTPPPIDDGDVDGEILSGGEKSESVSP 98

Query: 628 IRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +  R++R+     R    +D          S   +    S             +      
Sbjct: 99  VTSRQKRKETAAARDGEESDEQPVTKRRRRSPKSSPKKRSPGNGGRSKAAAKDSPSPKKL 158

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDP 711
               E    S    S  ++E  +    P
Sbjct: 159 KSEPEPELSSAEENSASDIEEDDVDEQP 186



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 29/141 (20%), Gaps = 3/141 (2%)

Query: 555 GIELADKLFYIEKGSPVQAL---VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
                     +++               +          D  I    +    +    S  
Sbjct: 44  DETKDGDEESVDQAPQTPRKQVGRAGSKRTPPPIDDGDVDGEILSGGEKSESVSPVTSRQ 103

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                      E +      +RRRR  + +      G      +          +  EP 
Sbjct: 104 KRKETAAARDGEESDEQPVTKRRRRSPKSSPKKRSPGNGGRSKAAAKDSPSPKKLKSEPE 163

Query: 672 DITNHNLLENGAHGFTENYDV 692
              +     + +    ++ D 
Sbjct: 164 PELSSAEENSASDIEEDDVDE 184


>gi|134079331|emb|CAK96960.1| unnamed protein product [Aspergillus niger]
          Length = 1797

 Score = 45.0 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 44/159 (27%), Gaps = 15/159 (9%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I + +   A  +        S A +   +     +              D   +   + 
Sbjct: 4   RITRSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPAR--------RDRSVDAPEQS 55

Query: 624 STGVIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           +     ++ +R+RR       + PAT          +S        + D     +     
Sbjct: 56  NPSSSPRKSKRQRRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPAS 115

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               + +   +++   +  P    + +  + +S   + K
Sbjct: 116 RRKSSRSGKVSQDNASAAQPSPRRQKKRPSRASPDTIMK 154



 Score = 41.1 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 16/141 (11%)

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
                       S        N  +  +    RK   RR R   A +  +       S  
Sbjct: 7   RSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPARRDRSVDAPEQSNPSSSPRKSKR 66

Query: 657 QNVIDDSFDMYMEPSDITN--------HNLLENGAHGFTENYDVSIPPVSTPE------- 701
           Q     S      P+                 +       + + + PP S  +       
Sbjct: 67  Q-RRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPASRRKSSRSGKV 125

Query: 702 MESSNSSSDPIVKKTRWWKRR 722
            + + S++ P  ++ +    R
Sbjct: 126 SQDNASAAQPSPRRQKKRPSR 146


>gi|194382890|dbj|BAG59001.1| unnamed protein product [Homo sapiens]
          Length = 1061

 Score = 45.0 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/175 (9%), Positives = 38/175 (21%), Gaps = 21/175 (12%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                L                 +          AP    +      +     +P S    
Sbjct: 890  ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGLLPPSADDN 935

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668
                 + ++E+     ++ +R+R       P       G V      +       +    
Sbjct: 936  LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 995

Query: 669  EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            EP      +             + + S P      +     S  P  ++    + 
Sbjct: 996  EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1050


>gi|212645183|ref|NP_493400.2| hypothetical protein Y6B3B.1 [Caenorhabditis elegans]
 gi|189309795|emb|CAB04901.2| C. elegans protein Y6B3B.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|189309810|emb|CAA21727.2| C. elegans protein Y6B3B.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1828

 Score = 45.0 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 43/155 (27%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +P   + +              D       + + +  +    ++ D++    +++   + 
Sbjct: 741 APKNPVEHNLEAQNPTDPPILADPAPPIRIKRKYVRKMKVPAAVGDVKPTRRTQKRKMLE 800

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + R         T+  D    S+  S              P       ++E+       
Sbjct: 801 DRDRTSMEEVVAKTEKKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKR 860

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +     P  +S   S  P   K + W RRK
Sbjct: 861 RKGRKLEASEDPRDQSGAPSGAPEPVKKKTWSRRK 895



 Score = 38.8 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 52/190 (27%), Gaps = 13/190 (6%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-- 599
            EA+      ++           I++    +  V         ++     K +E   +  
Sbjct: 750 LEAQNPTDPPILADP---APPIRIKRKYVRKMKVPAAVGDVKPTRRTQKRKMLEDRDRTS 806

Query: 600 -DEALLPIPKSESLEDIQDNIVSEES----TGVIRKRRRRRRRRRPATD-HHDAGVVSDV 653
            +E +    K +  E  +D   S E      G    ++RRR R     +          +
Sbjct: 807 MEEVVAKTEKKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRRKGRKL 866

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--P 711
            + ++  D S      P  +                    +        E S   ++  P
Sbjct: 867 EASEDPRDQSGAPSGAPEPVKKKTWSRRKKVVDPSEMVPQMNTRRRKISERSEYPAELGP 926

Query: 712 IVKKTRWWKR 721
           + ++ R    
Sbjct: 927 VRRRKRKRDP 936


>gi|308504467|ref|XP_003114417.1| hypothetical protein CRE_27170 [Caenorhabditis remanei]
 gi|308261802|gb|EFP05755.1| hypothetical protein CRE_27170 [Caenorhabditis remanei]
          Length = 1208

 Score = 45.0 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 6/117 (5%)

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            ++ ++N    + T    KRR +RRR +   +  ++   S V   Q    +          
Sbjct: 1060 QNNKENSPPLQGTSRTAKRRDQRRRAQVRKEKQESQNQSLVLQDQQKRRNRPSKKQRERQ 1119

Query: 673  ITNHNLLENGAHG------FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                N  +                + + P     +         P VKK      R+
Sbjct: 1120 RNRQNKEQEVDKKLANIILEPSTTETARPQTENRDSVVPGKRRKPQVKKDNQNSARR 1176


>gi|221506161|gb|EEE31796.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1109

 Score = 45.0 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 1/148 (0%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             +  E+    +A  N       +          +   Q     P+ K E+ E        
Sbjct: 929  HYASEREEENRAQSNDEKAPNREESRDRRKDETDNAEQRAEDAPVQKREADEGRDREAGE 988

Query: 622  EESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                G       +R   +           +   S  +    +  +   +  +       E
Sbjct: 989  TRVKGEQEDNELQREGAKNDELPEEKRNDIQRESEARRSEREDEETLAKREEEDRLVQRE 1048

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSS 708
                  +E  D  +       +      
Sbjct: 1049 EETLAKSEEEDRLVQREEEETLAKREEE 1076


>gi|237835733|ref|XP_002367164.1| hypothetical protein TGME49_048170 [Toxoplasma gondii ME49]
 gi|211964828|gb|EEB00024.1| hypothetical protein TGME49_048170 [Toxoplasma gondii ME49]
          Length = 1115

 Score = 45.0 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 1/148 (0%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             +  E+    +A  N       +          +   Q     P+ K E+ E        
Sbjct: 935  HYASEREEENRAQSNDEKAPNREESRDRRKDETDNAEQRAEDAPVQKREADEGRDREAGE 994

Query: 622  EESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                G       +R   +           +   S  +    +  +   +  +       E
Sbjct: 995  TRVKGEQEDNELQREGAKNDELPEEKRNDIQRESEARRSEREDEETLAKREEEDRLVQRE 1054

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSS 708
                  +E  D  +       +      
Sbjct: 1055 EETLAKSEEEDRLVQREEEETLAKREEE 1082


>gi|198476752|ref|XP_002132434.1| GA25185 [Drosophila pseudoobscura pseudoobscura]
 gi|198137836|gb|EDY69836.1| GA25185 [Drosophila pseudoobscura pseudoobscura]
          Length = 4986

 Score = 45.0 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 31/153 (20%), Gaps = 6/153 (3%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E+    Q   +   K     +     +      Q E           +    +   +E  
Sbjct: 1002 EREKAHQKERHEREKRKQQEREEKEKERKAHHHQPEDKEKEKAHPERKTQTHHQEEKEKE 1061

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                +  + + R+       +     +  + +     + +   +                
Sbjct: 1062 RKSHQEEKEKERK---AQQQEEKERDERKAKEEKERKAQEEREQKERDEKEQQRVQEQRE 1118

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
              +              E  +   D   K+   
Sbjct: 1119 QEKRE---REQREKEHREKEHRERDHREKEKEQ 1148


>gi|125718690|ref|YP_001035823.1| translation initiation factor IF-2 [Streptococcus sanguinis SK36]
 gi|166198937|sp|A3CQ18|IF2_STRSV RecName: Full=Translation initiation factor IF-2
 gi|125498607|gb|ABN45273.1| Translation initiation factor IF-2, putative [Streptococcus
           sanguinis SK36]
          Length = 930

 Score = 45.0 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 7/153 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +P +  V             +     E      A  P  K+E+   ++            
Sbjct: 58  APAEKPVAAQPSPQKTPAKEAAPVKAEPTEAKAAAQPEAKTETAAPVKRPQSRNFKAERE 117

Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +      RR+++  R+P           D  +      +  D    P+D    N  ++G
Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNSNDRDRGNRPND-RRDNRGQDG 176

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                 +   +      P+    +  +     K
Sbjct: 177 RRNGQNHQGFNGQKRQQPQGPKIDFKARAAALK 209


>gi|332256960|ref|XP_003277585.1| PREDICTED: synemin [Nomascus leucogenys]
          Length = 1253

 Score = 45.0 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 44/173 (25%), Gaps = 9/173 (5%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G ++N    +      + + +                  +  + D     V+  E 
Sbjct: 412 ENSYGKTVNSQTNVRTFSPTYGLLRN-------TEAQVKTFPDRPKAGDTREAPVYIPED 464

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRR--RRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                +S           + ESTG   +     ++   +   +       +  +  +  +
Sbjct: 465 STIARESYWDRRDNVAAGASESTGSRERTVILGKKTEVKATREQERIRPETIRTKPEEKM 524

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            DS +   E  ++    L +                    +     S  +  V
Sbjct: 525 FDSKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577


>gi|237842343|ref|XP_002370469.1| hypothetical protein TGME49_077540 [Toxoplasma gondii ME49]
 gi|211968133|gb|EEB03329.1| hypothetical protein TGME49_077540 [Toxoplasma gondii ME49]
 gi|221502601|gb|EEE28321.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2234

 Score = 45.0 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 35/157 (22%), Gaps = 3/157 (1%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           + +            +     +AP                    SE+ E+        E 
Sbjct: 257 VVRSLEASPRQTKTKETSEIEKAPDDALGKAAGRAQAEPAEKSGSETKENALTVQNEREF 316

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 +R+R+R +             +            D+  EP         +  + 
Sbjct: 317 DEANGAKRKRKRTQEKEGASGGTRTAGESPRQG---RADGDVPEEPEQRRRQKRGKANSD 373

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
             T      +   +  E         P +++     R
Sbjct: 374 KTTRLKKPQLQRSTEKERTHRRDQRRPALRERDDASR 410


>gi|134076442|emb|CAK39668.1| unnamed protein product [Aspergillus niger]
          Length = 1043

 Score = 45.0 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/157 (8%), Positives = 34/157 (21%), Gaps = 3/157 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE---ST 625
            P   L          S+     +  + + ++         E     +      E   + 
Sbjct: 639 EPEAYLQPEARTEPKPSRPVRRGRGRKPLPENTDDAQASNEEIPAQAEQTEPETEVQPAQ 698

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                +  +R R RP +   +    +         +      +   +             
Sbjct: 699 QTEPPKPAKRGRGRPLSRKENDVTQAPDEEPTAQAEAVEPEPVPEPEEEPQPEPPAEPEP 758

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                         P   +  +   P  KK +  + R
Sbjct: 759 ARPAKLEEATAQDEPAEPAEPTEEAPPPKKRKPRQPR 795


>gi|332362940|gb|EGJ40729.1| translation initiation factor IF2 [Streptococcus sanguinis SK49]
          Length = 931

 Score = 45.0 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 7/176 (3%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           EA  G  I      + A     +EK +  Q    +  K  +   AP   +  E     + 
Sbjct: 39  EADAGERIKSSFTKKAAAPQATVEKPAAAQ---PSPQKTPAKEAAPVKAEQTEAKVTAKP 95

Query: 603 LLPIPKSESLEDIQDN---IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
              +  +  ++  Q        E       +RR+++  R+P           D  +    
Sbjct: 96  EAKVETAAPVKRPQSRNFKAEREARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRG 155

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                D    P+D    N  ++G      +   +      P+    +  +     K
Sbjct: 156 NRKDRDRGNRPND-RRDNRGQDGRRNDQNHQGFNGQNRQQPQGPKIDFKARAAALK 210


>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
 gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
          Length = 717

 Score = 45.0 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74
            E   ++   G IYL KV RVE      AFV+    + G +   E+
Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFVELFSGKDGLVHISEL 655


>gi|15598375|ref|NP_251869.1| hypothetical protein PA3179 [Pseudomonas aeruginosa PAO1]
 gi|107102709|ref|ZP_01366627.1| hypothetical protein PaerPA_01003775 [Pseudomonas aeruginosa PACS2]
 gi|116051168|ref|YP_790001.1| hypothetical protein PA14_23110 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890629|ref|YP_002439493.1| putative pseudouridine synthase [Pseudomonas aeruginosa LESB58]
 gi|254236141|ref|ZP_04929464.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241866|ref|ZP_04935188.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296388337|ref|ZP_06877812.1| putative pseudouridine synthase [Pseudomonas aeruginosa PAb1]
 gi|34098721|sp|Q9HZ55|RLUB_PSEAE RecName: Full=Ribosomal large subunit pseudouridine synthase B;
           AltName: Full=rRNA pseudouridylate synthase B; AltName:
           Full=rRNA-uridine isomerase B
 gi|9949297|gb|AAG06567.1|AE004742_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115586389|gb|ABJ12404.1| putative pseudouridine synthase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168072|gb|EAZ53583.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195244|gb|EAZ59307.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218770852|emb|CAW26617.1| putative pseudouridine synthase [Pseudomonas aeruginosa LESB58]
          Length = 386

 Score = 45.0 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/118 (9%), Positives = 18/118 (15%)

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                +    +  +       S      R+R  RR         A         Q   + 
Sbjct: 265 TTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDGENAARRAPASRPARGPQPSAER 324

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                  P                  +   +  P   P          P         
Sbjct: 325 KGREQGTPVAERPRESNRKPRPSKPRDERPASAPGDKPAARKPQVKRRPKPAGDGMRP 382


>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           weihenstephanensis KBAB4]
 gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
 gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
          Length = 717

 Score = 45.0 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74
            E   ++   G IYL KV RVE      AFV+    + G +   E+
Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFVELFSGKDGLVHISEL 655


>gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
 gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
          Length = 732

 Score = 45.0 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 27/110 (24%), Gaps = 8/110 (7%)

Query: 39  KGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQ 97
            G IY  KV  + P     AFV+    + G L   EI    Y         L K  +  +
Sbjct: 630 VGEIYEGKVKSIMPFG---AFVEIMPGKDGLLHISEIDWKRY----ESMDGLFKVGDEVR 682

Query: 98  TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147
                V                  +  P A         +    +     
Sbjct: 683 VKLLDVDKQGKLKLSRKALLPRPPKPQPEAQTPAAEGNGAPAEGDASKAE 732


>gi|296393509|ref|YP_003658393.1| hypothetical protein Srot_1089 [Segniliparus rotundus DSM 44985]
 gi|296180656|gb|ADG97562.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
          Length = 298

 Score = 44.6 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 32/126 (25%)

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
           +   +  +     + E  E     +   E    +    R R               +   
Sbjct: 91  QKPEEKPSWATFDEDEDDEIPPPALADAEQVATVAPITRPRPSSAAKPGEQPKPEQTRQR 150

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +      ++     +P+           A   TE    S PP  +    S  ++  P   
Sbjct: 151 ATPTSRANAKPASAKPATSKPTATKPTSAKPKTEKPASSKPPARSKPAASKTTAKKPPAP 210

Query: 715 KTRWWK 720
           K+   +
Sbjct: 211 KSSTAR 216


>gi|258576711|ref|XP_002542537.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902803|gb|EEP77204.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 815

 Score = 44.6 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 27/126 (21%), Gaps = 16/126 (12%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ---------------DEALLPIPKSES 611
           K  P                 P +    E   +               D    P P +  
Sbjct: 302 KPQPEVRPEPASKPESKPEPKPDHKPEPEPRPEQKPQPPPEPKPEPKQDTPAPPQPSNTE 361

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            +  QD   S+        RR+   RR+   +        +    +     + +   +  
Sbjct: 362 AKPAQDRQKSDWERAREEMRRKEEIRRK-MEEFRKKRAEDERRKQEEQERIAREEQQQRD 420

Query: 672 DITNHN 677
                 
Sbjct: 421 KEAREK 426


>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
 gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
          Length = 639

 Score = 44.6 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618
           + +    G   +A  +               K IE + +        +    E +     
Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     + RR + RR        DA   +  S++    D +     +       N 
Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450

Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713
               A    +         + P      + + DP  
Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486


>gi|319410073|emb|CBY90407.1| IgA-specific serine endopeptidase (IgA protease) [Neisseria
            meningitidis WUE 2594]
          Length = 1811

 Score = 44.6 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521
            +    +I                 A   + Q + A  + R   E   +            
Sbjct: 986  QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1045

Query: 522  HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                ++      ++  +  E   R               +   +     V+A        
Sbjct: 1046 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1095

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640
                      K                +E     +        T   + +R R+RR  P 
Sbjct: 1096 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1154

Query: 641  ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                A+               NV        +           E  A    E    +   
Sbjct: 1155 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1214

Query: 697  VSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +  + E+  +         R    RK
Sbjct: 1215 AARRKAEAEEAKRQAAELAHRQEAERK 1241


>gi|71651879|ref|XP_814607.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879596|gb|EAN92756.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1288

 Score = 44.6 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 45/155 (29%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +            ++  + +   +   ++ A     +  + +  ++    +++    
Sbjct: 975  KRAEEEAARKQAEEEAARKQAEEAARKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEA 1034

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
             +++     R+ A +        + ++ +   +++     E          E       E
Sbjct: 1035 ARKQAEEAARKRAEEEAARKQAEEEAARKQAEEEAARKRAEEEAARKQAEEEAARKQAEE 1094

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +   V   + E S      + KK     R+K
Sbjct: 1095 EAARTRAEVQEEKAELSVKERRKLAKKKIERYRKK 1129


>gi|194740960|ref|XP_001952957.1| GF17457 [Drosophila ananassae]
 gi|190626016|gb|EDV41540.1| GF17457 [Drosophila ananassae]
          Length = 3045

 Score = 44.6 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 44/180 (24%), Gaps = 4/180 (2%)

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALVNTGHKVGSDSQAPS 589
            +        E +  V  +     +       +       S          K  S+ + P 
Sbjct: 1053 ELEDRFNALERKMSVQKSSPAKTKKEPPDENVGSKDTSASKESDKTEKHVKKVSEEKDPK 1112

Query: 590  YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
               N     +         S++   I      ++ +   +    +  ++     +     
Sbjct: 1113 AAPNNASKEEKLPPKERNASDNESKIPSPDNPQKGSPSRKPSPDQSEKKECTKSNAADSE 1172

Query: 650  VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
             S  +  +     +        D      L+      T+  + S  P+ TP     ++  
Sbjct: 1173 ESSSTPERQKTVSTKKERHNEKDTKESQFLKKSDEESTKKSEASNEPIQTPRKSPPSTEE 1232


>gi|115375944|ref|ZP_01463192.1| hypothetical protein STIAU_4841 [Stigmatella aurantiaca DW4/3-1]
 gi|115367027|gb|EAU66014.1| hypothetical protein STIAU_4841 [Stigmatella aurantiaca DW4/3-1]
          Length = 431

 Score = 44.6 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/151 (7%), Positives = 39/151 (25%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +  +A      K   ++     +       +++           +   +    ++  
Sbjct: 176 QRQTEAEAKRQAEAKQREETARAQAEARKAAEDEEKRRQAEEAQAKRQAETEAKQRKQEE 235

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +   RR           +       + ++       +   +     +    E     
Sbjct: 236 ARAQAEARRTAEAEEKQRQKEEAEARRQAEVEAKQRKQEEARAQAEARRSAQAEETRRQQ 295

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            T     + PP    + +S+ +      +KT
Sbjct: 296 ETARVASAEPPAREEQGDSAAAPGISARRKT 326


>gi|195474867|ref|XP_002089711.1| GE22696 [Drosophila yakuba]
 gi|194175812|gb|EDW89423.1| GE22696 [Drosophila yakuba]
          Length = 1440

 Score = 44.6 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/319 (10%), Positives = 84/319 (26%), Gaps = 39/319 (12%)

Query: 434  KNNRSVEKKLKESLKKDRARVQVGAI--SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491
            ++   ++   K  +    +   +  I  + F   E+  + +   +  +  ++ TY     
Sbjct: 1121 QHYTCLKNLTKHYISSYTSETSIENIRGTKF---ELLLRGVGKQLPANIYELITY----- 1172

Query: 492  YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
             I + +    + L + +  +    A  +        V+ ++      I+    +      
Sbjct: 1173 -IEANTLDEEAQLHTKKRKVQAERAKVLRETRLIPKVIMVIEDFNKHIILLSKKTKSKNR 1231

Query: 552  VVIGIELADK-LFYIEKGS-PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
            +   + L     F I+          +        ++  + +   +   ++       +S
Sbjct: 1232 LTDYLHLGTMRDFDIKSTDLRAAIERSISDGRNISTEDSNGEDQDQDENENVEEDDDNQS 1291

Query: 610  ES--------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA-------- 647
             +              +E          S+     + +R+R R+ A              
Sbjct: 1292 TTYPEELEEQEDEYILIEKKGQRRRRASSSEAEDPQPKRKRGRKAAEKLEAKVQCEDEEE 1351

Query: 648  --GVVSDVSSIQNVIDDSFDMYME--PSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
                 +D++S  N             P    N     +     T+         +    E
Sbjct: 1352 VEEEQNDITSKLNRNRKVEPKTKGSVPKATKNPEEQPSHDSRTTKKSKALAEKKTQNPTE 1411

Query: 704  SSNSSSDPIVKKTRWWKRR 722
                      KK     RR
Sbjct: 1412 DLCIREVHAEKKKPQPSRR 1430


>gi|110631441|gb|ABG81066.1| immunoglobulin A1 protease precursor [Neisseria meningitidis]
          Length = 1818

 Score = 44.6 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521
            +    +I                 A   + Q + A  + R   E   +            
Sbjct: 997  QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1056

Query: 522  HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
                ++      ++  +  E   R               +   +     V+A        
Sbjct: 1057 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1106

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640
                      K                +E     +        T   + +R R+RR  P 
Sbjct: 1107 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1165

Query: 641  ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                A+               NV        +           E  A    E    +   
Sbjct: 1166 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1225

Query: 697  VSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +  + E+  +         R    RK
Sbjct: 1226 AARRKAEAEEAKRQAAELAHRQEAERK 1252


>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
          Length = 639

 Score = 44.6 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618
           + +    G   +A  +               K IE + +        +    E +     
Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     + RR + RR        DA   +  S++    D +     +       N 
Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450

Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713
               A    +         + P      + + DP  
Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486


>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 639

 Score = 44.6 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618
           + +    G   +A  +               K IE + +        +    E +     
Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     + RR + RR        DA   +  S++    D +     +       N 
Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450

Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713
               A    +         + P      + + DP  
Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486


>gi|15829205|ref|NP_326565.1| lipoprotein [Mycoplasma pulmonis UAB CTIP]
 gi|14090149|emb|CAC13907.1| VLPE-LIKE (Mycoplasma hyorhinis) LIPOPROTEIN [Mycoplasma pulmonis]
          Length = 682

 Score = 44.6 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 35/170 (20%), Gaps = 3/170 (1%)

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
            L               + N        +      +  +             S    D Q
Sbjct: 46  SLTPSNSEKTNNQDTGKINNNSPTSSKPNIGNIEQEGSQTPNNPNVEEQKSDSPKAPDTQ 105

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           D+   +E            + +  +  +       D                E   +   
Sbjct: 106 DSGKKQEEELKSPSSPDAGQSQPESPQNPSTPNSEDKDQKPEEPQAPDKSKDENQMLGES 165

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSN---SSSDPIVKKTRWWKRRK 723
              +      T+      P    P     N   +S      K +WW++ +
Sbjct: 166 QTPDTPNVEDTQPEAPQSPNPEEPNNSEENMDSNSDKEKESKPKWWEKSE 215


>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
 gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
          Length = 639

 Score = 44.6 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618
           + +    G   +A  +               K IE + +        +    E +     
Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     + RR + RR        DA   +  S++    D +     +       N 
Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450

Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713
               A    +         + P      + + DP  
Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486


>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 639

 Score = 44.6 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618
           + +    G   +A  +               K IE + +        +    E +     
Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     + RR + RR        DA   +  S++    D +     +       N 
Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450

Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713
               A    +         + P      + + DP  
Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486


>gi|255727280|ref|XP_002548566.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134490|gb|EER34045.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1078

 Score = 44.6 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/195 (9%), Positives = 54/195 (27%), Gaps = 23/195 (11%)

Query: 542  YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
             E +    +  V       +   +EK    + +     +     Q  +    +E    ++
Sbjct: 885  IEEKEPKVVEAVPESTPKVQEADVEKEVQQEPVKQPKVEQPKAEQPKAEQPKVEQPKAEQ 944

Query: 602  ALLPIPKSESLEDIQDNIVSEESTGVIRKRRR----------------RRRRRRPATDHH 645
                 PK+E  +  Q      +      ++ +                + + + P  +  
Sbjct: 945  PKAEQPKAEQPKAEQPKAEQPKVEQPKAEQPKVEPVSQKKVVEEAPVVQEKSKEPIPEPS 1004

Query: 646  DAGV-----VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                     V   S  Q     +    ++       + +E      + +  V    V+  
Sbjct: 1005 TVQTPIIEQVKPSSVEQPQQSTTSKSEVQQESSNTQSSVE--TPASSTSKIVRTKKVTRT 1062

Query: 701  EMESSNSSSDPIVKK 715
             ++S  +++ P   +
Sbjct: 1063 IIKSKPTNNAPEKDE 1077


>gi|221485304|gb|EEE23585.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1124

 Score = 44.6 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 1/148 (0%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             +  E+    +A  N       +          +   Q     P+ K E+ E        
Sbjct: 912  HYASEREEENRAQSNDEKAPNREESRDRRKDETDNAEQRAEDAPVQKREADEGRDREAGE 971

Query: 622  EESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                G       +R   +           +   S  +    +  +   +  +       E
Sbjct: 972  TRVKGEQEDNELQREGAKNDELPEEKRNDIQRESEARRSEREDEETLAKREEEDRLVQRE 1031

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSS 708
                  +E  D  +       +      
Sbjct: 1032 EETLAKSEEEDRLVQREEEETLAKREEE 1059



 Score = 44.6 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 42/161 (26%), Gaps = 6/161 (3%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEES 624
            ++            +     +  + +       +         +E   E  +++ + EE 
Sbjct: 938  DRRKDETDNAEQRAEDAPVQKREADEGRDREAGETRVKGEQEDNELQREGAKNDELPEEK 997

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               I++    RR  R   D        +   +    +++     E   +      E  A 
Sbjct: 998  RNDIQRESEARRSERE--DEETLAKREEEDRLVQREEETLAKSEEEDRLVQREEEETLAK 1055

Query: 685  GFTENYDVSIPPV---STPEMESSNSSSDPIVKKTRWWKRR 722
               E+           S    E     +D   K     +RR
Sbjct: 1056 REEEDRLAPSRAAREGSEETTEGIRGYNDEREKSRETEQRR 1096


>gi|302916995|ref|XP_003052308.1| hypothetical protein NECHADRAFT_79351 [Nectria haematococca mpVI
           77-13-4]
 gi|256733247|gb|EEU46595.1| hypothetical protein NECHADRAFT_79351 [Nectria haematococca mpVI
           77-13-4]
          Length = 1070

 Score = 44.6 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 1/230 (0%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +R        + R+  +   +    +       D  +Y    K  T+ + E +   S+ 
Sbjct: 719 RLRITGKRLDHLERAFRKEEAKKLHEDHAKQIEEDRAIY-EKVKAQTLKDAEQKHKESVE 777

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           +   +      +   + S  +   +   K   D++     +      +        K E 
Sbjct: 778 LKHRLSRLVPQYESFRDSLHERRRDEFEKRRRDAERELEKQISIRKKEVRDRRLREKRER 837

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            E  ++   +EE     R+ R  R   R                             E +
Sbjct: 838 EEKERELREAEEKAAREREERELREEARKEELAKLKEQREKERQEMLEKAALQQRREEEA 897

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   E G   F+   + +         E S+    P+    +W +R
Sbjct: 898 LARRKAEKERGPPTFSRGPERAERAERVERAEPSDGRRPPVFGAGKWRER 947


>gi|115933324|ref|XP_781520.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115963864|ref|XP_001188428.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1967

 Score = 44.6 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 13/177 (7%)

Query: 552  VVIGIELADKLFYIEKGSPVQ---ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
            V             E+    +     V+T +KV S         +   V  + ++   P 
Sbjct: 1201 VRENKSTDSPNMREERNRSSESKQRPVSTPNKVESPQLNALISPSSIAVSSNSSVKDSP- 1259

Query: 609  SESLEDIQDNIVSEESTGVIRKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
            + + +D ++     ++T        R     +  P     D  V       Q     +  
Sbjct: 1260 ASNTKDERERSKPNKTTERSVDDVARQLYPIKPIPVKKAEDKQVKQAKEPKQ----TAPS 1315

Query: 666  MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                PS        E  + G  E+   S P  S P   +       + K+ +   RR
Sbjct: 1316 TDRAPSKTEKAPGTEKKSKGSMESNPSSTP--SNPSDPNPGYVRSKMRKEKQMGPRR 1370


>gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str.
           Malish 7]
 gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str.
           Malish 7]
          Length = 749

 Score = 44.6 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 32/176 (18%)

Query: 9   ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68
           AS  ++ +V +   ++++ +  E E      G I+   V +V  S   AF++Y GN+ GF
Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   E+                     +    E V+  +  GD+        +       
Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688

Query: 129 FSQETEEESIISANNDVVS-NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183
             +  +++   +      + N  +     PE      K++   ++       ++ +
Sbjct: 689 TIKNADKDKSSNNTKPKTNVNNTNKDNSEPEQRRDSSKKRAWNEDNNAETAEVITE 744


>gi|325511407|sp|A6NJU9|YP038_HUMAN RecName: Full=Putative NPIP-like protein LOC613037
          Length = 1138

 Score = 44.6 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 38/153 (24%), Gaps = 7/153 (4%)

Query: 576  NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
            +          AP    +      +    P+P S         + ++E+     ++ +R+
Sbjct: 975  SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQ 1034

Query: 636  RRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTE 688
            R       P       G V      +       +    +P      +             
Sbjct: 1035 RAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKRRRVGDVEPSRKPKRRRAA 1094

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            + + S P      +     S  P  ++    + 
Sbjct: 1095 DVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1127



 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 18/175 (10%)

Query: 554  IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                L       E+                + T  +       PS D N++         
Sbjct: 967  ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 1023

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
               K    +  +   +        R+       R+ +RR A D   +        + +V 
Sbjct: 1024 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKRRRVGDVE 1083

Query: 661  DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                      +D+   +           + + S  P      +   SS +P  ++
Sbjct: 1084 PSRKPKRRRAADVEPSSPE--PKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRR 1136


>gi|194766405|ref|XP_001965315.1| GF24504 [Drosophila ananassae]
 gi|190617925|gb|EDV33449.1| GF24504 [Drosophila ananassae]
          Length = 3217

 Score = 44.6 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 10/149 (6%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDK-------NIECVWQDEALLPIPKSESLEDIQDNIVSE 622
                   T   VG D ++P YD              + E        +S+ D   +  S 
Sbjct: 1380 ADGEAETTSAVVGVDGESPDYDDIPVSKIPRSANEEEKEPEAGDETVDSVPDSAGDAAST 1439

Query: 623  ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
             S    ++   R RR   + +   A       S + +        + P      + L+  
Sbjct: 1440 PSRRDRKRSTARSRRNANSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRT 1499

Query: 683  AHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                           S     S N+    
Sbjct: 1500 PPPS---PPPDSELDSNKRRSSRNTQRKK 1525



 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 46/161 (28%), Gaps = 10/161 (6%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I + +  +           DS   S         + +      +S   
Sbjct: 1396 ESPDYDDIPVSKIPRSANEEEKEPEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1455

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
             + ++   +  + G +  +  ++RR R     +        D +   +   DS     + 
Sbjct: 1456 ANSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSELDSNKR 1515

Query: 671  SDITNHNLLE--NGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                N    +  +       + + S+   S  + E  +S++
Sbjct: 1516 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKEKKSSAN 1556


>gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638]
 gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638]
          Length = 711

 Score = 44.6 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 23/112 (20%)

Query: 7   IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63
           I A+  E+ +  +    R+EE+  + E        G IY  KVTR+       AFV  GG
Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643

Query: 64  NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108
            + G +   +I         DY Q+       +L+     +           
Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 695


>gi|85085472|ref|XP_957517.1| hypothetical protein NCU04440 [Neurospora crassa OR74A]
 gi|28918609|gb|EAA28281.1| predicted protein [Neurospora crassa OR74A]
 gi|40882180|emb|CAF06006.1| hypothetical protein G21B4.210 [Neurospora crassa]
          Length = 1019

 Score = 44.6 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/143 (9%), Positives = 31/143 (21%), Gaps = 1/143 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+    +A      +     Q        E   + E  +     +  +  Q  +   E  
Sbjct: 214 EREKRDKAEREKKEQAAKAQQEAKVKAAREAQERAEREVKKRARDEEDQKQAELERAERN 273

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             + + R    RR+    H            Q   + S        +     +       
Sbjct: 274 ARLNRERSEDARRQAEQKHAAEAARKKEEQRQ-AREASEAEMASLEEAKRQAMRPPPPPS 332

Query: 686 FTENYDVSIPPVSTPEMESSNSS 708
                           +  + +S
Sbjct: 333 KQLLSTPPTSRTRELVVPDTGNS 355


>gi|325116375|emb|CBZ51928.1| putative KH domain-containing protein [Neospora caninum Liverpool]
          Length = 1073

 Score = 44.6 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 36/157 (22%), Gaps = 1/157 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+    +             +    DK  E      +      +   +  +D        
Sbjct: 36  EEAKEREKDNREREGGDGKDRRRDTDKERERGRGRGSDRGDRGNAGRDGSRDGEKDRRDD 95

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +++ RR     +         S   S      D            +H    +  H 
Sbjct: 96  KEKERKKSRRDESEESDRESTGRSRSKDRSSPRHRRDKRKREETKEREASHKNETSRRHH 155

Query: 686 FTENYDV-SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              + D  +    S    +   SS      + R  K+
Sbjct: 156 SACSADSHASINKSRERSQERKSSKHRHSSRDRRAKK 192



 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 9/114 (7%)

Query: 614 DIQDNIVSEESTGVIRKRRRRR----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
            ++     EE+    +  R R     + RR  TD          S   +  +   D   +
Sbjct: 28  RVRTAKGREEAKEREKDNREREGGDGKDRRRDTDKERERGRGRGSDRGDRGNAGRDGSRD 87

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +  +                 S  E    + S D    + R  KR++
Sbjct: 88  GEKDRRDDKEKERKKSR-----RDESEESDRESTGRSRSKDRSSPRHRRDKRKR 136


>gi|229824770|ref|ZP_04450839.1| hypothetical protein GCWU000182_00119 [Abiotrophia defectiva ATCC
           49176]
 gi|229791099|gb|EEP27213.1| hypothetical protein GCWU000182_00119 [Abiotrophia defectiva ATCC
           49176]
          Length = 984

 Score = 44.6 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 14/235 (5%)

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS-INVV 553
           S  + A   L+  E    +     I               +   +   E    V    V 
Sbjct: 104 SAEAEAKKALQKEESGAKEAKVKEIKSEEAKMAEAKSAKNESTAV---EKETKVKEPKVK 160

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                A +   ++   P + +V+    V  +  A ++    +   Q  AL      +S  
Sbjct: 161 ESQGEAKEQKAVQAKEPEEKVVSESPSVSPEEAAIAF--ARKKASQAAALNSDKPGKSNA 218

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ-------NVIDDSFDM 666
               N   ++       R + +R      +  +     D  +         N        
Sbjct: 219 SGSGNKAQKQGDRKRADRPQGQRDSSKEGNRENRSRQGDGQNKNEGFRGGRNSERPQGQR 278

Query: 667 YMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
             +P +   N +    GA G + N + +         +SS    + I+ KT    
Sbjct: 279 GDKPFNKDGNSSNDRRGAAGGSRNGNNAGARGGQSRGQSSAGGEERIITKTGNRD 333


>gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
 gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
          Length = 770

 Score = 44.6 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 39  KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98
            G +Y  KV  + P    AFV++   + G L   EI          D + L         
Sbjct: 679 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 726

Query: 99  DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140
           + + +   +   D          +V       QE  E+   +
Sbjct: 727 EGDEIDVKLLDIDPKTGKFKLSRKVLLPRPERQERPEKKENN 768


>gi|322491326|emb|CBZ26594.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 4822

 Score = 44.6 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 42/135 (31%), Gaps = 5/135 (3%)

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             +E+    +     G      ++A   + +     +  +     +    ED+ ++  + +
Sbjct: 4354 DVEEFDFDEDGDREGIAAAEQTEAKPTETDAYEGEESHSDASSDEDGVGEDVDESADAPQ 4413

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             T     RR+RR+ +   T+  +       S  +   +       +     + +  ++ +
Sbjct: 4414 DT-----RRKRRQNKDELTELEEREAAEATSRKKRSKEKVRTTAGDEDASASEDQEDDDS 4468

Query: 684  HGFTENYDVSIPPVS 698
                +    +     
Sbjct: 4469 TKKDDQDAAAEANAK 4483



 Score = 41.5 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 38/160 (23%), Gaps = 16/160 (10%)

Query: 560  DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            ++   +                 +D      + + +     E +    ++E+     D  
Sbjct: 4326 NQHVEVTDEKDEPKAEKPPKTDQADDPEDVEEFDFDEDGDREGIAAAEQTEAKPTETDAY 4385

Query: 620  VSEES----------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
              EES                      +  RR+RR+   +  +        +        
Sbjct: 4386 EGEESHSDASSDEDGVGEDVDESADAPQDTRRKRRQNKDELTELEEREAAEATSRKKRSK 4445

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              +     D       +      T+  D      +  ++E
Sbjct: 4446 EKVRTTAGDEDASASEDQEDDDSTKKDDQDAAAEANAKLE 4485


>gi|198474329|ref|XP_001356647.2| GA16382 [Drosophila pseudoobscura pseudoobscura]
 gi|198138344|gb|EAL33712.2| GA16382 [Drosophila pseudoobscura pseudoobscura]
          Length = 1654

 Score = 44.6 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 15/242 (6%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
            E+ R+R       S T      +       + + A    R+ E    Q            
Sbjct: 1394 EVDREREHEQRHSSLTSSHRSSRETNNRPKERTEAELNQRARERAQRQEE---------L 1444

Query: 526  DVVLYLLNQKRATIVEYEARFG----VSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
            +      NQKR      E R       ++++V       +    ++        +     
Sbjct: 1445 EAAAAQRNQKREKTSRREERHRHEGLETVDLVASNS--TEHRQFDEYEGRHRDRDLSSVS 1502

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
               + +  + +++E +  ++         S    +      +S    R + + R + + +
Sbjct: 1503 NESNGSMQHRRSLEAIEYEKDSKRRKLESSSSSSKKVEELVDSVKKARLKTKERNKDKLS 1562

Query: 642  TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
             +  DA     +   ++  ++S ++  +      +   +        +           +
Sbjct: 1563 DEERDARKDRKLGRKRDRAEESNNIEHKRRREAQNGDDDLRERERHRDKSPRERSHEKFD 1622

Query: 702  ME 703
             E
Sbjct: 1623 RE 1624


>gi|194768250|ref|XP_001966226.1| GF19561 [Drosophila ananassae]
 gi|190623111|gb|EDV38635.1| GF19561 [Drosophila ananassae]
          Length = 1975

 Score = 44.6 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 13/162 (8%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            K S  +          +  + P            EA            +  ++ S++   
Sbjct: 923  KDSSSEGKEQKHESRPTRGRTPPPRSQKIEASSTEASHQGEFQSQESGLPASLASQKKDE 982

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSD------------VSSIQNVIDDSFDMYMEPSDIT 674
              R++ RR R   P+++      +S+             + + N           P    
Sbjct: 983  KTRRKPRRDRDTDPSSESECHKRLSNDACYSRCGYLPRSAYLINDFHQLMRRVARPRPSA 1042

Query: 675  NHNLLENGAHGFTENYDVSIPP-VSTPEMESSNSSSDPIVKK 715
                 +       +      PP  S PE +     + P V+K
Sbjct: 1043 ERLQRKAKRPNREKAVPERAPPKESPPESQKPGIKAKPKVRK 1084


>gi|119485232|ref|ZP_01619617.1| Hemolysin-type calcium-binding toxin [Lyngbya sp. PCC 8106]
 gi|119457460|gb|EAW38585.1| Hemolysin-type calcium-binding toxin [Lyngbya sp. PCC 8106]
          Length = 681

 Score = 44.6 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 31/168 (18%), Gaps = 11/168 (6%)

Query: 554 IGIELADKLFYI-----------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
              ++                      P             ++  P          +DE 
Sbjct: 84  SDPQIIQPESKSGSNSDVDVPPESNTEPETRTEVEPESPDENTPPPQSQTPQSPNLEDEQ 143

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P+     +++ +++   +          R                             
Sbjct: 144 DSPLNPQPEIDETEEDSPPQAEVEPPESEPRSPVESSEDESKETPASSDPQIIQPESKSG 203

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
           S      P +              + + +   P   TP+  +     D
Sbjct: 204 SNSNVEIPPESNTEPETRTEVEPESPDENTPPPQSQTPQSPNLEDEQD 251



 Score = 41.5 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 34/171 (19%), Gaps = 14/171 (8%)

Query: 554 IGIELADKLFYI-----------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
              ++                      P             ++  P          +DE 
Sbjct: 191 SDPQIIQPESKSGSNSNVEIPPESNTEPETRTEVEPESPDENTPPPQSQTPQSPNLEDEQ 250

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P+     +++ +++   +          R        ++       +          +
Sbjct: 251 DSPLNPQPEIDETEEDSPPQAEVEPPESEPRTPV---EPSEDEPKETPTTTDPQTTPEPE 307

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S        D+   +  E       E           P+    +S  D   
Sbjct: 308 SKSGSDSNVDVPPQSNTEPETRPEVEPEPPDDTTPDNPQPTQPDSQPDSQP 358


>gi|198450551|ref|XP_001358032.2| GA19664 [Drosophila pseudoobscura pseudoobscura]
 gi|198131086|gb|EAL27169.2| GA19664 [Drosophila pseudoobscura pseudoobscura]
          Length = 2182

 Score = 44.6 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 9/209 (4%)

Query: 511  LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA--DKLFYIEKG 568
              Q     ++  T  ++    L + R      EAR  + I     +++    + + ++  
Sbjct: 1526 AKQVEPKQLVAMTPEELASQELAKWRQE----EARHQLEIIEKSELDMLSCTQNYVVKTH 1581

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               + +         D ++    K+       E+       E     + +  ++E     
Sbjct: 1582 KGEEVIATKADVTLPDVESILDKKHTSQNSDPESASKDISLEHSSSKEKSGSTKEKRHKS 1641

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY---MEPSDITNHNLLENGAHG 685
             KR   R+R R  +      +        N ++   +      E     + +   +    
Sbjct: 1642 HKRHHPRKRSRSRSSSQTRSLEKRHRRHHNDVETGGERKHRHREKQHSKDRDERISSPAK 1701

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVK 714
              E  D S  P    E +   +S+  + K
Sbjct: 1702 KREENDRSFLPKIVTEKKPEEASASALAK 1730


>gi|297297277|ref|XP_001108469.2| PREDICTED: synemin [Macaca mulatta]
          Length = 1253

 Score = 44.6 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 46/171 (26%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G ++N    +      + + + +  Q           D++     +  +     E+
Sbjct: 412 ENTYGKTVNSSTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYRAEDSTVARES 471

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                 + +    +    +E +  + +K   +  R +              +  +  + D
Sbjct: 472 YRDRRDNVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIR-----TKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  +
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMREKAKEKDSPKEKSVQEREI 577


>gi|325133785|gb|EGC56441.1| IgA-specific serine endopeptidase [Neisseria meningitidis M13399]
          Length = 1822

 Score = 44.6 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%)

Query: 494  RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            + Q + A  + R   E   +                ++      ++  +  E   R    
Sbjct: 1029 KRQQAKAEQVKRQQAEAERKSAKLAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1087

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +     V+A                  K                +
Sbjct: 1088 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1138

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664
            E     +        T   + +R R+RR  P     A+               NV     
Sbjct: 1139 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1197

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +           E  A    E    +    +  + E+  +         R    RK
Sbjct: 1198 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1256


>gi|254804584|ref|YP_003082805.1| IgA-specific serine endopeptidase [Neisseria meningitidis alpha14]
 gi|254668126|emb|CBA04715.1| IgA-specific serine endopeptidase [Neisseria meningitidis alpha14]
          Length = 1832

 Score = 44.6 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%)

Query: 494  RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            + Q + A  + R   E   +                ++      ++  +  E   R    
Sbjct: 1030 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1088

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +     V+A                  K                +
Sbjct: 1089 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1139

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664
            E     +        T   + +R R+RR  P     A+               NV     
Sbjct: 1140 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1198

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +           E  A    E    +    +  + E+  +         R    RK
Sbjct: 1199 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1257


>gi|325143912|gb|EGC66222.1| IgA-specific serine endopeptidase [Neisseria meningitidis M01-240013]
 gi|325206456|gb|ADZ01909.1| IgA-specific serine endopeptidase [Neisseria meningitidis M04-240196]
          Length = 1786

 Score = 44.6 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%)

Query: 494  RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            + Q + A  + R   E   +                ++      ++  +  E   R    
Sbjct: 1019 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1077

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +     V+A                  K                +
Sbjct: 1078 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1128

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664
            E     +        T   + +R R+RR  P     A+               NV     
Sbjct: 1129 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1187

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +           E  A    E    +    +  + E+  +         R    RK
Sbjct: 1188 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1246


>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
 gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
          Length = 707

 Score = 44.6 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 20/91 (21%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 611 RIEEITAEIE-------VGRIYAGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVA 104
              DY Q+       +++     +       
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
 gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
          Length = 717

 Score = 44.6 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74
            E   ++   G IYL KV RVE      AFV+    + G +   E+
Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFVELFSGKDGLVHISEL 655


>gi|310123536|ref|XP_003118758.1| PREDICTED: nuclear pore complex-interacting protein-like 3-like
           isoform 2 [Homo sapiens]
          Length = 852

 Score = 44.6 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 4/138 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP+   +      +    P+P S         + ++E+    
Sbjct: 711 DDNLKTPSERQLTPLPPSAPTSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 770

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            ++ +R+R       P       G V      +       +             +E    
Sbjct: 771 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 830

Query: 685 GFTENYDVSIPPVSTPEM 702
                     P    P+ 
Sbjct: 831 PKRRRAADVEPSSPEPKR 848


>gi|302675867|ref|XP_003027617.1| hypothetical protein SCHCODRAFT_258597 [Schizophyllum commune H4-8]
 gi|300101304|gb|EFI92714.1| hypothetical protein SCHCODRAFT_258597 [Schizophyllum commune H4-8]
          Length = 447

 Score = 44.2 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 3/146 (2%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            IE+ + + A   +  +  S           + V +DE   P+   + +E+         
Sbjct: 305 DIERYADLVAEARSLRREISKIAEDYDRDKWDDVVEDERGRPVNGGKKVEEESGVAEGRA 364

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                R  +  R  ++   D  +     ++   +    D  +       I   +L +   
Sbjct: 365 MDKAERLDKEERLDKKERLDKEE---RRELDKEERRELDKGEGDRRGRRINKEDLKDAST 421

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSS 709
              +E+           + +    S+
Sbjct: 422 EVKSESRRKVDEVTGEEDRKDREGSA 447


>gi|254706879|ref|ZP_05168707.1| hypothetical protein BpinM_07811 [Brucella pinnipedialis
           M163/99/10]
          Length = 203

 Score = 44.2 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           +   E      +  ++    +  +V T   V +     + ++  E   +        K+E
Sbjct: 29  IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 88

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +      +EE      ++ R R++        +A   ++    +     +     +P
Sbjct: 89  EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 148

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                               +    P ST  + +S+ S D   K++ WW+++
Sbjct: 149 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 200


>gi|63100354|gb|AAH94882.1| LOC23117 protein [Homo sapiens]
          Length = 739

 Score = 44.2 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 569 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 628

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
            ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 629 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 688

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + + S P      +     S  P  ++    + 
Sbjct: 689 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 728



 Score = 42.3 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 593 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 652

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 653 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 712

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 713 EPSRKPKRRRAADVEPSLPEPKR 735



 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 10/150 (6%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630
              + T  +       PS D N++            K    +  +   +        R+ 
Sbjct: 592 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRV 651

Query: 631 ---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                 R+ +RR A D      V   S                        +E  +    
Sbjct: 652 GDVEPSRKPKRRRAAD------VEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPK 705

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                 + P   P+   +      + +  R
Sbjct: 706 RRRVGDVEPSRKPKRRRAADVEPSLPEPKR 735


>gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
 gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
          Length = 702

 Score = 44.2 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74
            E   K    G +Y  KV R+E      AFV+    + G L   EI
Sbjct: 616 IEELTKDIEVGKVYSGKVKRIEKFG---AFVEIAKGKDGLLHISEI 658


>gi|145607531|ref|XP_361848.2| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145015060|gb|EDJ99628.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 671

 Score = 44.2 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 38/145 (26%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            ++  +P     +   +V         D +     +       P  E           + 
Sbjct: 29  DLQPSAPPPKAASRRKRVALKRSETVADHSESFEDEIRVGTKRPAVEPEALADLTFPPQS 88

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           S    + RR R R+   + D     ++ D     N          +     +    + GA
Sbjct: 89  SPAAKKPRRGRPRKLVRSNDESLVILIEDKPPAGNPTAAQAARAGKRRRTRSAKDTDEGA 148

Query: 684 HGFTENYDVSIPPVSTPEMESSNSS 708
                +      PV  P     +S+
Sbjct: 149 GAAQRDSPEPGNPVPQPASSKEDSN 173


>gi|302413255|ref|XP_003004460.1| cupin domain-containing protein [Verticillium albo-atrum VaMs.102]
 gi|261357036|gb|EEY19464.1| cupin domain-containing protein [Verticillium albo-atrum VaMs.102]
          Length = 653

 Score = 44.2 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/153 (8%), Positives = 35/153 (22%), Gaps = 2/153 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K            +     + P+ +   +    DE ++    +++    +       S+ 
Sbjct: 237 KAKSTAPSKGKAREEHRAIELPAIEGATDESEDDEPIVRGKAAQNKAKQKQKETEPSSSQ 296

Query: 627 VIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
             ++RR  R             A       +       +      P+     N  +    
Sbjct: 297 TSKRRRSARGSLIGDVTDLVESAPEHEPADAPSPKRQRTEAKPGRPAGRPPKNTNKTKEP 356

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +            +      S+     + R
Sbjct: 357 EPAKKTAAPKAGRPAKDDAPEAPSAAKKRGRPR 389


>gi|212636927|ref|YP_002313452.1| band 7 protein [Shewanella piezotolerans WP3]
 gi|212558411|gb|ACJ30865.1| Band 7 protein [Shewanella piezotolerans WP3]
          Length = 592

 Score = 44.2 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 45/182 (24%), Gaps = 1/182 (0%)

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           ++ +KR    + E    + I     +E   +   IEK      LV         ++  + 
Sbjct: 217 IIEEKRKETNDIEQENRIKIE-QRNLEAEKQSLEIEKTEEEARLVQQQALEFKRAEQKAE 275

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
               +     E        E   +  +   +++      ++R+   + R           
Sbjct: 276 ILKQQEQKTREEREAEIAKERAIETAEIEKTKDIETREIEKRKAIEQSRIQQQRDIEVAE 335

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
            D         +        +       +E      T             E+  +   ++
Sbjct: 336 QDKQIAVAAKSEEESAARAQAADAEKLKVEKEEAVITTRQVAEANRRKEIEVIDARKEAE 395

Query: 711 PI 712
             
Sbjct: 396 RE 397


>gi|301063495|ref|ZP_07204027.1| translation initiation factor IF-2 [delta proteobacterium NaphS2]
 gi|300442434|gb|EFK06667.1| translation initiation factor IF-2 [delta proteobacterium NaphS2]
          Length = 958

 Score = 44.2 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 40/165 (24%), Gaps = 5/165 (3%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             F  EK    ++          ++      +  E   +       P SE     +    
Sbjct: 154 PEFS-EKAPLEESKAPLETAPAPEAPEQPVAEPPEVTEEKPPTEKSPVSEKPPQEEAPPQ 212

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             E+    +K     +  +              + I +  ++     +   +        
Sbjct: 213 EMEAAPRKKKTPGAEKPAKVKGKKGKKRKSEKPAKIISPPEEGPLKNLLAKEAVKKQAKP 272

Query: 681 NG---AHGFTENYDV-SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  G  E      + P+    +E     + P  +K  W K 
Sbjct: 273 KAPMPKRGVPEKASKIPVEPLPPKVLEPQPDEAKPSKRKKGWKKE 317


>gi|15676598|ref|NP_273742.1| IgA-specific serine endopeptidase [Neisseria meningitidis MC58]
 gi|7225928|gb|AAF41117.1| IgA-specific serine endopeptidase [Neisseria meningitidis MC58]
 gi|325139921|gb|EGC62451.1| IgA-specific serine endopeptidase [Neisseria meningitidis CU385]
          Length = 1815

 Score = 44.2 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%)

Query: 494  RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            + Q + A  + R   E   +                ++      ++  +  E   R    
Sbjct: 1018 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1076

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +     V+A                  K                +
Sbjct: 1077 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1127

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664
            E     +        T   + +R R+RR  P     A+               NV     
Sbjct: 1128 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1186

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +           E  A    E    +    +  + E+  +         R    RK
Sbjct: 1187 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1245


>gi|293609863|ref|ZP_06692165.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828315|gb|EFF86678.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 473

 Score = 44.2 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/206 (7%), Positives = 40/206 (19%), Gaps = 5/206 (2%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                   H           QKR      +A            +L  +    E       
Sbjct: 142 QKQQAEAKHQAEAKAKSEAEQKRKAEQNAKAAEDAKRKAEADAKLKREAQKAENAKLQAQ 201

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                              +      D       +  + +  +      ++        +
Sbjct: 202 QEAKRKAEAEAKAKQQKANDDAKRKADADAKAKQQKANDDAKRKADADAKAKQQKADEAK 261

Query: 634 RR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           R+     R ++   +       +D  + Q   +D      E          ++       
Sbjct: 262 RKAEADARAKQQKAEEAKRKAEADAKAKQQKANDEAKRKAEADAKAKQQKADDAKRKAEA 321

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714
           +           + ++   +     K
Sbjct: 322 DAKAKQKAADDAKRKAEADAKAKQQK 347


>gi|161869642|ref|YP_001598809.1| IgA-specific serine endopeptidase [Neisseria meningitidis 053442]
 gi|161595195|gb|ABX72855.1| IgA-specific serine endopeptidase [Neisseria meningitidis 053442]
          Length = 1787

 Score = 44.2 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%)

Query: 494  RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            + Q + A  + R   E   +                ++      ++  +  E   R    
Sbjct: 990  KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1048

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +     V+A                  K                +
Sbjct: 1049 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1099

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664
            E     +        T   + +R R+RR  P     A+               NV     
Sbjct: 1100 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1158

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +           E  A    E    +    +  + E+  +         R    RK
Sbjct: 1159 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1217


>gi|156047715|ref|XP_001589825.1| hypothetical protein SS1G_09547 [Sclerotinia sclerotiorum 1980]
 gi|154693942|gb|EDN93680.1| hypothetical protein SS1G_09547 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 859

 Score = 44.2 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 6/159 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+ SP            +   + S  KN      D   +P                +ES 
Sbjct: 83  ERVSPS-KDRRRRQSGYATEDSSSPSKNRRRREGDYDEIPGSPRRERRRRDHGYTDDESG 141

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + RRRR R     TD        D    +    D          I+     +NG   
Sbjct: 142 TPNKDRRRRER---GYTDDESGYPGEDRKKREREYSDYETAAETALRISKQRRKQNGIPE 198

Query: 686 FTENYDVSIPPVSTPEMESSNSSS--DPIVKKTRWWKRR 722
             +N      P      + +++ +  +   K+ +  KRR
Sbjct: 199 PKQNAPRKAQPTLKIPNKFTDNEAVYEKPRKEPKTKKRR 237


>gi|260173562|ref|ZP_05759974.1| transcription termination factor Rho [Bacteroides sp. D2]
 gi|315921830|ref|ZP_07918070.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695705|gb|EFS32540.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 765

 Score = 44.2 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 10/150 (6%), Positives = 35/150 (23%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
               +         +A    +        +       +   ++        E+T   +++
Sbjct: 76  TKKEDKVVSATKSEEANKTKETAPVKAAPQPSKKEESTNKEKETVVVEAKAENTATPKRK 135

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             R R+   A +  +       +                +      + +  A    +N  
Sbjct: 136 VGRPRKSSDAEEKKEVENAKPAAPKVVEPKPVVAEKATGATEKPAPVQQQTAEKKAKNKP 195

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +       E     +  +  V + +   +
Sbjct: 196 AAEANKPVAETNKPATEPNKPVVEKKVIDK 225


>gi|225848130|ref|YP_002728293.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644676|gb|ACN99726.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 573

 Score = 44.2 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 5/145 (3%)

Query: 35  KKQIKGNIYLAKVTR-VEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93
            K   G++   KV + +E     AFVD      GF+P  EI  +  +IP SD+ +L +E 
Sbjct: 431 SKHKVGDVVKGKVKKLIEKG---AFVDITDEIEGFIPVSEISKERIKIP-SDKLSLHQEV 486

Query: 94  NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153
                  +     +T     +  D   + +       +E ++++   A   ++  +   +
Sbjct: 487 EAKIIKIDTQNKKITLSIKQLILDQEKKALEEEKKRQEEEKKKAEEEAKRKLLEKLSQKE 546

Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQ 178
                           I++ +  R+
Sbjct: 547 EKKEPQGEGLGTLGELIRKKLMERE 571


>gi|313224616|emb|CBY20407.1| unnamed protein product [Oikopleura dioica]
          Length = 1741

 Score = 44.2 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 35/144 (24%), Gaps = 5/144 (3%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            K    + +  T  +                V + E   P  +++  E      +  E + 
Sbjct: 1323 KSRAKKEVAATPVRRSRRKTTVKRRPRARKVEEPEESSPAKQAKIDEPEYVEAIPAEVSA 1382

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                   RR RR   T+  +         I            E SD         G    
Sbjct: 1383 AP-----RRTRRNSKTETAEVKKEEPAKKIAKRRKRDTSASAESSDNEAATKPTRGRKAK 1437

Query: 687  TENYDVSIPPVSTPEMESSNSSSD 710
             EN+  +   +       S  S  
Sbjct: 1438 KENFAETEKKIGKSPKRPSRKSKK 1461



 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 67/237 (28%), Gaps = 15/237 (6%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
            +  + +  ++   +       A   +    + V     N +++ ++  E           
Sbjct: 1209 TTETESSPVISKRDRKSNATKAEESVNIVEAPVAPAEKNTRKSLLLMSEES-------AE 1261

Query: 555  GIELADKLFYIEKGSPVQALVNT---GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
               +  +    E     +              ++   + + ++         +P+  +  
Sbjct: 1262 DAVVKSQAKVFESTKDAEISDYPFLLEASKKEETDETAKELDVVEQKTSSTEVPLVVATP 1321

Query: 612  LEDIQDNIVSEESTGVIRKRR---RRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMY 667
             +      V+       R++    RR R R+    +       + +   + V     ++ 
Sbjct: 1322 SKSRAKKEVAATPVRRSRRKTTVKRRPRARKVEEPEESSPAKQAKIDEPEYVEAIPAEVS 1381

Query: 668  MEPSDITNHNLLENGAHGFTE-NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              P     ++  E       E    ++          + +S ++   K TR  K +K
Sbjct: 1382 AAPRRTRRNSKTETAEVKKEEPAKKIAKRRKRDTSASAESSDNEAATKPTRGRKAKK 1438


>gi|195147882|ref|XP_002014903.1| GL19422 [Drosophila persimilis]
 gi|194106856|gb|EDW28899.1| GL19422 [Drosophila persimilis]
          Length = 1654

 Score = 44.2 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 15/242 (6%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
            E+ R+R       S T      +       + + A    R+ E    Q            
Sbjct: 1394 EVDREREHEQRHSSLTSSHRSSRETNNRPKERTEAELNQRARERAQRQEE---------L 1444

Query: 526  DVVLYLLNQKRATIVEYEARFG----VSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581
            +      NQKR      E R       ++++V       +    ++        +     
Sbjct: 1445 EAAAAQRNQKREKTSRREERHRHEGLETVDLVASNS--TEHRQFDEYEGRHRDRDLSSVS 1502

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
               + +  + +++E +  ++         S    +      +S    R + + R + + +
Sbjct: 1503 NESNGSMQHRRSLEAIEYEKDSKRRKLESSSSSSKKVEELVDSVKKARLKTKERNKDKMS 1562

Query: 642  TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
             +  DA     +   ++  ++S ++  +      +   +        +           +
Sbjct: 1563 DEERDARKDRKLGRKRDRAEESNNVEHKRRREAQNGDDDLRERERHRDKSPRERSHEKFD 1622

Query: 702  ME 703
             E
Sbjct: 1623 RE 1624


>gi|121710324|ref|XP_001272778.1| AT hook motif protein [Aspergillus clavatus NRRL 1]
 gi|119400928|gb|EAW11352.1| AT hook motif protein [Aspergillus clavatus NRRL 1]
          Length = 890

 Score = 44.2 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 9/163 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD---EALLPIPKSESLEDIQDNIVSEE 623
           K  P +   +       +++  +     +    +   E         +  D        E
Sbjct: 528 KVRPAEIEQDKPQPSDQNAEQETQKDPEKEQEPESQLEVEKEAQIPPASADESQLHRQPE 587

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           S    +KRR R        +  +AG   +    Q    ++ +   +P             
Sbjct: 588 SALRPKKRRGRPSLASKRNEG-NAGGAEERQERQETQPETGEEAPQPVKKRTRQPRGETV 646

Query: 684 HGF-----TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                          +    +P  E  ++      +KT+  KR
Sbjct: 647 PVTVHRLVNVASLAELSRPDSPAEEEDSADELAARRKTKLPKR 689



 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/158 (7%), Positives = 40/158 (25%), Gaps = 3/158 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+        +            +  +++    +  A  P     +  +      S+++ 
Sbjct: 487 EQEETQPEAKSDNITNKEQEAETTVPQHLVRKKKGRAGRPAKVRPAEIEQDKPQPSDQNA 546

Query: 626 GVIRKR-RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               ++   + +      +      +   S+ ++ +    +  + P            + 
Sbjct: 547 EQETQKDPEKEQEPESQLEVEKEAQIPPASADESQLHRQPESALRPKKRRGRP--SLASK 604

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               N   +       E +       P   K R  + R
Sbjct: 605 RNEGNAGGAEERQERQETQPETGEEAPQPVKKRTRQPR 642


>gi|23270703|gb|AAH36263.1| LOC23117 protein [Homo sapiens]
          Length = 678

 Score = 44.2 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 508 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 567

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681
            ++ +R+R       P       G V      +       +    EP      +      
Sbjct: 568 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 627

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + + S P      +     S  P  ++    + 
Sbjct: 628 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 667



 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 532 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 591

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 592 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 651

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 652 EPSRKPKRRRAADVEPSLPEPKR 674



 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 10/150 (6%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630
              + T  +       PS D N++            K    +  +   +        R+ 
Sbjct: 531 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRV 590

Query: 631 ---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                 R+ +RR A D      V   S                        +E  +    
Sbjct: 591 GDVEPSRKPKRRRAAD------VEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPK 644

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                 + P   P+   +      + +  R
Sbjct: 645 RRRVGDVEPSRKPKRRRAADVEPSLPEPKR 674


>gi|293372703|ref|ZP_06619085.1| transcription termination factor Rho [Bacteroides ovatus SD CMC 3f]
 gi|299146813|ref|ZP_07039881.1| transcription termination factor Rho [Bacteroides sp. 3_1_23]
 gi|292632512|gb|EFF51108.1| transcription termination factor Rho [Bacteroides ovatus SD CMC 3f]
 gi|298517304|gb|EFI41185.1| transcription termination factor Rho [Bacteroides sp. 3_1_23]
          Length = 765

 Score = 44.2 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/150 (6%), Positives = 35/150 (23%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
               +         +A    +        +       +   ++        E+T   +++
Sbjct: 76  TKKEDKVVSATKSEEANKTKETAPVKAAPQPSKKEESTNKEKETVVVEAKAENTATPKRK 135

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             R R+   A +  +       +                +      + +  A    +N  
Sbjct: 136 VGRPRKSSDAEEKKEVENAKPAAPKVVEPKPVVAEKATGATEKPAPVQQQTAEKKAKNKP 195

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +       E     +  +  V + +   +
Sbjct: 196 AAEANKPVAETNKPATEPNKPVVEKKVIDK 225


>gi|160886329|ref|ZP_02067332.1| hypothetical protein BACOVA_04338 [Bacteroides ovatus ATCC 8483]
 gi|156108214|gb|EDO09959.1| hypothetical protein BACOVA_04338 [Bacteroides ovatus ATCC 8483]
          Length = 765

 Score = 44.2 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/150 (6%), Positives = 35/150 (23%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
               +         +A    +        +       +   ++        E+T   +++
Sbjct: 76  TKKEDKVVSATKSEEANKTKETAPVKAAPQPSKKEESTNKEKETVVVEAKAENTATPKRK 135

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             R R+   A +  +       +                +      + +  A    +N  
Sbjct: 136 VGRPRKSSDAEEKKEVENAKPAAPKVVEPKPVVAEKATGATEKPAPVQQQTAEKKAKNKP 195

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +       E     +  +  V + +   +
Sbjct: 196 AAEANKPVAETNKPATEPNKPVVEKKVIDK 225


>gi|46143205|ref|ZP_00204412.1| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 135

 Score = 44.2 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 36/49 (73%)

Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410
           +    S G ++I+ TEAL +ID+NS RSTR   IE+TAL TNLEAA+EI
Sbjct: 79  KCVYRSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEI 127


>gi|326476550|gb|EGE00560.1| IRE protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 1151

 Score = 44.2 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 11/161 (6%), Positives = 39/161 (24%), Gaps = 4/161 (2%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            +I  +    +      IE+    +        +      P   +  +   +      + 
Sbjct: 542 KNIISIPDNSVTTSSKTIEQKPADERTEYPALVIHP----PPEQEEQKETDETLTESKVE 597

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
              +      N+++ E+      R  +        +  D    +     +          
Sbjct: 598 PVPADSKPSPNLLTSETNQETPSRDSQTPAADEPAEAEDPAAKTPRKKARRGRRGGQAHK 657

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               +       +N       +    +  +S  ++  + S+
Sbjct: 658 RGKKNAQESADPDNPPSQSGGSQGARLNSLSDLQLARTASN 698


>gi|68479205|ref|XP_716408.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
 gi|68479334|ref|XP_716346.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
 gi|46438012|gb|EAK97350.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
 gi|46438075|gb|EAK97412.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
          Length = 407

 Score = 44.2 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 38/135 (28%)

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
               ++ + +   +    ++        +  +    +  ++E T  I+KR RR ++ +  
Sbjct: 253 EKPEKSKNGEDVSKDKSVNKDTKGQEDVKLSKKSNGSKSTDEGTKEIKKRPRRSKKPKDT 312

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
           ++       S   +  +   +            N    ++      +    S PP     
Sbjct: 313 SEKTKKQTESKSGTTSDEKTEVAKPSKATKSKANKPTSKSSKPESKDEQSSSTPPKKQSR 372

Query: 702 MESSNSSSDPIVKKT 716
              S         K 
Sbjct: 373 KPKSQPKDSQQTTKV 387



 Score = 41.5 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 2/157 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSE 622
            + +    +   +         + P   KN E V +D+++    K  E ++  + +  S+
Sbjct: 231 TVSREKSKEKDKSKEKTKDKGKEKPEKSKNGEDVSKDKSVNKDTKGQEDVKLSKKSNGSK 290

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +    ++ ++R RR +   D  +       S      D+  ++        +       
Sbjct: 291 STDEGTKEIKKRPRRSKKPKDTSEKTKKQTESKSGTTSDEKTEVAKPSKATKSKANKPTS 350

Query: 683 AHGFTENYDV-SIPPVSTPEMESSNSSSDPIVKKTRW 718
                E+ D  S       +     S      + T+ 
Sbjct: 351 KSSKPESKDEQSSSTPPKKQSRKPKSQPKDSQQTTKV 387


>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
           tropicalis]
          Length = 943

 Score = 44.2 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 42/163 (25%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +++  +        +   + G + GS  +            +          +     
Sbjct: 779 PNISNASYPAATLFGARDGASAGSESGSKERHSDSRGRHGDSHRHGDREGHRHGDGHRHS 838

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             +   E + G  R+   R  RR   +    +    +     +   +         D   
Sbjct: 839 SSSRHGERNGGEGRRESSRDGRREGESRRDSSRDGGEGRRESSRDGEGRRESSRDGDGRR 898

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            +  E       ++ D         + ++      P  KK+RW
Sbjct: 899 ESSGEGRREATRDDGDSRKEGTREAKNDNFAIPEPPKRKKSRW 941


>gi|300122679|emb|CBK23246.2| unnamed protein product [Blastocystis hominis]
          Length = 903

 Score = 44.2 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 10/150 (6%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEES 624
           E+GSP  A                         ++  +     +  S +           
Sbjct: 140 ERGSPALASSRAPLHRSRREAPSRRVGAGREEAREVPVAGAQPTRVSAKPSPQVGRRGRP 199

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH--NLLENG 682
             +  + R+RRR+         AG+    S+ +     S      P+   N   N   N 
Sbjct: 200 EILADEVRQRRRK-------QGAGLTPRFSTSETRNTRSDRTSRTPNRTPNRTPNRTPNR 252

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
               T N   +  P  TP    + + +   
Sbjct: 253 TPNRTPNRTPNRTPNRTPNRTPNRTPNRTQ 282


>gi|157868455|ref|XP_001682780.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126236|emb|CAJ03601.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 4825

 Score = 44.2 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 17/189 (8%)

Query: 506  SVEEYLLQYTAHNIIVHTHS--DVVLYLLNQKRATIVEYEARFGVSINVVIG-------- 555
              E+   +  A       +    V   L   +R  + +      V +             
Sbjct: 4290 KNEQAQRRDNAEQTRSQHNPYRAVKEALQRHQRQ-MQQLNLNQHVEVTDEKDEPKAEKPP 4348

Query: 556  -IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              + A     +E+    +     G      ++A   + +     +  +     K    ED
Sbjct: 4349 KPDQAGDQEDVEEFDFDEDGDREGLAAAEHTEAKPTETDAYEDEESHSDASGDKDGIGED 4408

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              ++  + + T     RR+RR+ R   T+       +     ++          E +  +
Sbjct: 4409 EDESADAPQDT-----RRKRRQSRDELTELEAKEAAATSQRKRSKRKVRTTAGDEDASAS 4463

Query: 675  NHNLLENGA 683
                 ++  
Sbjct: 4464 EDQEDDDST 4472


>gi|170040101|ref|XP_001847850.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863662|gb|EDS27045.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 970

 Score = 44.2 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 3/157 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            + +    Q L+    +    +   +         ++ A     KS+ +E          
Sbjct: 241 ELAREKERQKLLAREQERNRIAAELAAKDREREKQKEFAKEKGKKSKEVEKDTPEATGTT 300

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPSDITNHNLLE 680
                     R R+RR +T        S   S    +   D S     +           
Sbjct: 301 PAPTKEPSSSRERKRRQSTKPGAKPDESPKRSKSVSEIAKDSSTKEASKKDGKKETEANP 360

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  +    +     T      +S      K T+
Sbjct: 361 ESKKKDAKTVSKTKETNGTAATAEKSSKEASKEKDTK 397



 Score = 39.6 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 42/158 (26%), Gaps = 1/158 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+   V+           + +       +    + + +L + + +     +     E   
Sbjct: 161 ERQRQVELAKEKERLRLLELEKQRIAAELAVEREKQRVLDLAREKERRAAELAKQREREQ 220

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
            + +++ R     R      +     +   +     +   +  E +        +     
Sbjct: 221 ELAKQKERELELAREKEKAAELAREKERQKLLAREQERNRIAAELAAKDREREKQKEFAK 280

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   +    TPE   +  +       +R  KRR+
Sbjct: 281 EKGKKSKEVEK-DTPEATGTTPAPTKEPSSSRERKRRQ 317


>gi|326477436|gb|EGE01446.1| IRE protein kinase [Trichophyton equinum CBS 127.97]
          Length = 1151

 Score = 44.2 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 11/161 (6%), Positives = 39/161 (24%), Gaps = 4/161 (2%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            +I  +    +      IE+    +        +      P   +  +   +      + 
Sbjct: 542 KNIISIPDNSVTTSSKTIEQKPADERTEYPALVIHP----PPEQEEQKETDETLTESKVE 597

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
              +      N+++ E+      R  +        +  D    +     +          
Sbjct: 598 PVPADSKPSPNLLTSETNQETPSRDSQTPAADEPAEAEDPAAKTPRKKARRGRRGGQAHK 657

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               +       +N       +    +  +S  ++  + S+
Sbjct: 658 RGKKNAQESADPDNPPSQSGGSQGARLNSLSDLQLARTASN 698


>gi|149633805|ref|XP_001510724.1| PREDICTED: similar to WDR9 protein, form A [Ornithorhynchus anatinus]
          Length = 2599

 Score = 44.2 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 1/231 (0%)

Query: 494  RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
            R     A  + +                  + +  + + N+K       E        + 
Sbjct: 2218 RKIRGKAKVVRKDTVPKAFTRKTRKRKCVLNQEASVQMTNEKLKARTFTEKVPRRCATIA 2277

Query: 554  IGIELADKLFYIEKGSPVQA-LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                        E  SP    +  +  K+   + + +  K +  + ++        SE  
Sbjct: 2278 ANKIRKMSDVKEENSSPESVCMKRSSRKLPHRTASAAARKRLLTISEENDAGFRYDSERE 2337

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            +D  +  +   S      +R      R  ++   +   +  S   N  +       +P  
Sbjct: 2338 QDDTNREMRSPSASDPGSKRCNSGSEREKSESKSSLKGTQKSWPANGEESPSAQMKDPEA 2397

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +  E+G     ++       + T   E    S     +KTR   RRK
Sbjct: 2398 KNYPSEDESGKKAPCQSTSGQKSTLETNSGEDECGSEIWSDRKTRRMPRRK 2448



 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 35/159 (22%), Gaps = 6/159 (3%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
             +G   +  +  G             +       +    P+  S   +   +     E  
Sbjct: 1979 TRGRKGRKPLPRGTATIPKKMILYDSEGDTNFECESEKEPVELSAFRDQAFEARSEIEKK 2038

Query: 626  --GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                                  +       S+  +     F       D  +H   +   
Sbjct: 2039 SVRESENEDSDSESHSKGARWKNRRASGPKSTPVSFKTKHFSTASSEEDSKSHTPGDENE 2098

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +G +        P      ++S    +     +RW  RR
Sbjct: 2099 NGASCLGTSGKKPA----AKNSKEEEEAGPGPSRWRDRR 2133


>gi|73959105|ref|XP_536972.2| PREDICTED: similar to Ribosomal L1 domain containing protein 1
           (Cellular senescence inhibited gene protein) (PBK1
           protein) (CATX-11) [Canis familiaris]
          Length = 490

 Score = 44.2 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 46/191 (24%), Gaps = 15/191 (7%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R    +        +       K       ++         Q        +       
Sbjct: 300 EKRKNKRLEKQGKKAASAP-----KEEDADPKISDAVAKDPAPQKEKMQAREKKEAGKGK 354

Query: 603 LLPIPKSESLEDIQ----------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                + ES ++I           +NI  +      + +++     RP      A    +
Sbjct: 355 TQQKVQDESEDEIPLLVPIGTPAKENIEVQNHAAGKKSQKKSPGPNRPRGKKRKACPGLE 414

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                           +P          N + G  +    +  P +     ++ S+    
Sbjct: 415 TPKAAEAKTPGNGPEKKPRIKEEAEKERNSSLGKKDPRQKTKKPGARFFTTANKSAKKAP 474

Query: 713 VKKTRWWKRRK 723
               +W K+RK
Sbjct: 475 HTPKQWPKKRK 485


>gi|237843607|ref|XP_002371101.1| splicing factor, arginine/serine-rich 4, putative [Toxoplasma
           gondii ME49]
 gi|211968765|gb|EEB03961.1| splicing factor, arginine/serine-rich 4, putative [Toxoplasma
           gondii ME49]
          Length = 1461

 Score = 43.8 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 1/151 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
              +       + Q  +          +   L    S   E    +          +  +
Sbjct: 837 QNASDHTVPDREPQVFAALSRNARRHSELPDLRRQDSSENEGANAHKHGRSLASEEKHPK 896

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +R    + A     +       +      D  D   E        L E        +   
Sbjct: 897 KREGESKEAEKTDSSPSKKKQHATAKSPKDVQDNRSEGRTRRKRPLCETSNESEKADGGK 956

Query: 693 SIPPVSTPEM-ESSNSSSDPIVKKTRWWKRR 722
           + P   +P   +++ S+S P  KK     R+
Sbjct: 957 NRPVRKSPRDGQTAKSASKPTAKKPPNRDRQ 987


>gi|195012259|ref|XP_001983554.1| GH15516 [Drosophila grimshawi]
 gi|193897036|gb|EDV95902.1| GH15516 [Drosophila grimshawi]
          Length = 1158

 Score = 43.8 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 31/153 (20%), Gaps = 2/153 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P ++      K     +  S   +     +         +      +     +       
Sbjct: 370 PFRSRSPERRKETKSRRNDSSPDSRRENSRRHKSKERQAATQTPPQRQRSKEKRQRSKE- 428

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            ++R + R+R                  +          +       +     +     +
Sbjct: 429 -KQRSKERQRSKERQRSKERHRSKDRATSKERQQSKERQQRQKERKRSKERQKSKERLRS 487

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +           E   S   P  K+    K R
Sbjct: 488 KERQRSKERLRSKERLRSKDRPKSKEKLRSKER 520



 Score = 41.1 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 33/142 (23%)

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
              S   S   N       ++    P                S    R++  + RR   +
Sbjct: 331 TRASSTDSARSNSPVRKSKKSAKSRPPPADAGSGTPLDNPFRSRSPERRKETKSRRNDSS 390

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            D          S  +     +        +    +  +  +     + +          
Sbjct: 391 PDSRRENSRRHKSKERQAATQTPPQRQRSKEKRQRSKEKQRSKERQRSKERQRSKERHRS 450

Query: 702 MESSNSSSDPIVKKTRWWKRRK 723
            + + S      K+ +  ++ +
Sbjct: 451 KDRATSKERQQSKERQQRQKER 472


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score = 43.8 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 1/165 (0%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P          ++ 
Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             +E+  G    + +RR       + +            N  +D    + +P D   +  
Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGN-REDQGRAHSKPDDRKPNGN 470

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             NG        + +    +     +   +S          +RRK
Sbjct: 471 KPNGNKPSGNKPNGNKSGNAGKPSGNRKPNSAKPAGNKPSGQRRK 515


>gi|325954515|ref|YP_004238175.1| PSP1 domain protein [Weeksella virosa DSM 16922]
 gi|323437133|gb|ADX67597.1| PSP1 domain protein [Weeksella virosa DSM 16922]
          Length = 487

 Score = 43.8 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 47/173 (27%), Gaps = 8/173 (4%)

Query: 525 SDVVLYL-LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
            DV  ++ LN++   I   E      +          +   +E+        N  ++   
Sbjct: 315 EDVKEFIRLNKENQKIDSLEELSKNIMETKPVFTDVIEEDSLERFDRKNKSQNKRNRQNR 374

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLE---DIQDNIVSEESTGVIRKRRRR----RR 636
              +   +         +       + S +       +   EE+  + ++RRR+    + 
Sbjct: 375 QRNSKESNPKQSTQSTRQRKPQNRTATSGKQQVPSTPSKPEEENKTLHKQRRRKPVPVKN 434

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           +    T+      V       +   ++     +            G     ++
Sbjct: 435 KTEQRTNPIKKQDVQPTKKNTHQGQNTVQHGKQEQKSKPKKRYNRGPQNRKKD 487



 Score = 41.5 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 41/147 (27%), Gaps = 4/147 (2%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV+ +         + +  S ++  + + + + +     ++ +E+        ++    +
Sbjct: 313 PVEDVKEFIRLNKENQKIDSLEELSKNIMETKPVF----TDVIEEDSLERFDRKNKSQNK 368

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           + R+ R+R    ++   +   +     QN    S    +  +        +         
Sbjct: 369 RNRQNRQRNSKESNPKQSTQSTRQRKPQNRTATSGKQQVPSTPSKPEEENKTLHKQRRRK 428

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
                                P  K T
Sbjct: 429 PVPVKNKTEQRTNPIKKQDVQPTKKNT 455


>gi|221484742|gb|EEE23036.1| splicing factor, arginine/serine-rich, putative [Toxoplasma gondii
           GT1]
          Length = 1461

 Score = 43.8 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 1/151 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
              +       + Q  +          +   L    S   E    +          +  +
Sbjct: 837 QNASDHTVPDREPQVFAALSRNARRHSELPDLRRQDSSENEGANAHKHGRSLASEEKHPK 896

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +R    + A     +       +      D  D   E        L E        +   
Sbjct: 897 KREGESKEAEKTDSSPSKKKQHATAKSPKDVQDNRSEGRTRRKRPLCETSNESEKADGGK 956

Query: 693 SIPPVSTPEM-ESSNSSSDPIVKKTRWWKRR 722
           + P   +P   +++ S+S P  KK     R+
Sbjct: 957 NRPVRKSPRDGQTAKSASKPTAKKPPNRDRQ 987


>gi|312216405|emb|CBX96356.1| hypothetical protein [Leptosphaeria maculans]
          Length = 887

 Score = 43.8 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 31/114 (27%)

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
            +  +  ++   S         RRRRR     + +        D    +     +  M  
Sbjct: 2   PDLSDRERERDPSRRRPHGDEPRRRRRESHGGSAEPERRRQSLDPERRRKRESRAEPMIN 61

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              D    +  +          D S   +  PE ++      P     R + RR
Sbjct: 62  TNIDTNTVHNHDGRRRNGHRPTDSSGELLPKPERQARAKQRSPSRPSRREYARR 115


>gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
 gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
          Length = 716

 Score = 43.8 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 39  KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98
            G +Y  KV  + P    AFV++   + G L   EI          D + L         
Sbjct: 628 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 675

Query: 99  DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
           + + +   +   D          +V       QE  E+   
Sbjct: 676 EGDEIDVKLLDIDPKTGKFKLSRKVLLPKPERQERPEKKDK 716


>gi|160932316|ref|ZP_02079707.1| hypothetical protein CLOLEP_01151 [Clostridium leptum DSM 753]
 gi|156868918|gb|EDO62290.1| hypothetical protein CLOLEP_01151 [Clostridium leptum DSM 753]
          Length = 417

 Score = 43.8 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 40/161 (24%), Gaps = 6/161 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G   +   +   +  + ++  + + +     +     P   + + +  +      E    
Sbjct: 248 GKKAERGPSKTEEPPAPAEKQAAEGDGAHGDEPRTEEPARPAPAGKKAEKGPSKTEEPSA 307

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             K++          +           + +            P          +GAHG  
Sbjct: 308 PAKKQAAEGDGAHGDEPRTEEPAQPAPAGKKAERGPSKTEEPPVPAEKQAAEGDGAHGDE 367

Query: 688 ENYDVSIPPVSTPEM------ESSNSSSDPIVKKTRWWKRR 722
                   P    E       E     +  + KK R  ++R
Sbjct: 368 PRTGEPAQPAPAGEKAGGRAPEGEQQEAGAMPKKIRKGRKR 408


>gi|229496567|ref|ZP_04390281.1| translation initiation factor IF-2 [Porphyromonas endodontalis ATCC
           35406]
 gi|229316464|gb|EEN82383.1| translation initiation factor IF-2 [Porphyromonas endodontalis ATCC
           35406]
          Length = 1000

 Score = 43.8 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 15/169 (8%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-----SLEDIQDNIVSEES 624
             +  V    +  +   AP+  K  E     E   P  + E       +   + I   + 
Sbjct: 228 KSEEPVTPKVEAPAQEVAPAVPKGEENHTNSEIYRPSERKELGVTVVGKIDLNTINPPKK 287

Query: 625 TGVIRKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           T    + R RR+R        +  A    D    +   +  N  +        P++    
Sbjct: 288 TDKGERNRGRRKRIGSQAVDVKSEAAKGIDPVNPNIRRNSGNNKNGGAPQGSTPNNQRRR 347

Query: 677 NLLENGAHG--FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           N  EN        E  +  +       +           KK R  K R+
Sbjct: 348 NKKENNKPVAPKQEITEEDVQKQVKETLARLQGKKTSFEKKARIRKDRR 396


>gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
 gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
          Length = 703

 Score = 43.8 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 36/159 (22%), Gaps = 7/159 (4%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           + + +    L       G     P   K  E             +       D   + E+
Sbjct: 516 LTRLAQAPDLGQDRPGGGKPGAKPYRKKRPEDRDA-RPERAAKPAREARPSYDARPAREA 574

Query: 625 TGVIRKRR--RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT----NHNL 678
               +  +    + ++ P +   +   +   ++ +           +P            
Sbjct: 575 KPQDKPYKPAAAKGKKPPKSHKTERSPMKPGATPKPKTTGGDTADRKPGKAKPVWTKEAR 634

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
               A   T +        +      +    DP   K R
Sbjct: 635 DGAKAERVTRDKAHREDGGAARPNTKAAPKKDPAASKKR 673


>gi|119490691|ref|XP_001263068.1| Mis12-Mtw1 protein, putative [Neosartorya fischeri NRRL 181]
 gi|119411228|gb|EAW21171.1| Mis12-Mtw1 protein, putative [Neosartorya fischeri NRRL 181]
          Length = 587

 Score = 43.8 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 44/168 (26%), Gaps = 4/168 (2%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             + F   +    +   +      + +  P                   ++   E+++  
Sbjct: 87  DIEGFQFTRLPSKKPRSSVDAAPENLNPVPEVPPQQSPRRGRPPKKKKTETVPEENVEHT 146

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
             S E TG  + RRRR     P                  ++V  +       PS     
Sbjct: 147 EKSAEVTGKRQTRRRRSAVTEPEPQPQSVTRSSTRKREETESVPKEKKRRKGRPSKTEVE 206

Query: 677 NLLENGAHGFTENYDV--SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                 +    ++     ++P   TP ++ +         +     RR
Sbjct: 207 ARNGFVSPEPQQSGTAKIALPLADTPVIQRNKEMRKEAKSEKGGKGRR 254


>gi|169771881|ref|XP_001820410.1| ribosomal RNA methyltransferase Nop2 [Aspergillus oryzae RIB40]
 gi|83768269|dbj|BAE58408.1| unnamed protein product [Aspergillus oryzae]
          Length = 751

 Score = 43.8 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 40/155 (25%), Gaps = 15/155 (9%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +            S+A +  K+ +    D+  +       +E    +    E      
Sbjct: 584 TDKKPEGEAASEPKSSEARATPKSDDEDVIDKTPITDDDGNVMETEGGSFGPFEEDDDAD 643

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE--------- 680
           +  R  R R      +   V++  S       +S +   +          +         
Sbjct: 644 RIARAERNRLRRKGINPKAVLNKPSKKSKSEPESTEESKDSESSAPEPKKKTATTTPEKA 703

Query: 681 -----NGAHGFTENYDVSIPPV-STPEMESSNSSS 709
                N      E+         STPE + S S +
Sbjct: 704 KKAQKNTKPKSQESTTPEKKSEGSTPEKKKSKSQA 738


>gi|296810184|ref|XP_002845430.1| cupin domain-containing protein [Arthroderma otae CBS 113480]
 gi|238842818|gb|EEQ32480.1| cupin domain-containing protein [Arthroderma otae CBS 113480]
          Length = 647

 Score = 43.8 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 36/134 (26%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                   +      D+Q    +  +        L  + K +  ++       +    ++
Sbjct: 235 DSADDDHESAAHDDVDAQVSEVEAELSEDSPPPVLNSLNKGKKHKEADKAAGKKNGENIV 294

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                +RR R+P +   +    +           S     + S++      E       +
Sbjct: 295 TDPPAKRRGRKPKSQREERDPENREDENPRPAKKSKKATTQSSNLQMTAEQEKDLKNVVD 354

Query: 689 NYDVSIPPVSTPEM 702
           N   +  P++    
Sbjct: 355 NITKNDGPLNKKRS 368


>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 42/163 (25%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             +++  +        +   + G + GS  +            +          +     
Sbjct: 734 PNISNASYPAATLFGARDGASAGSESGSKERHSDSRGRHGDSHRHGDREGHRHGDGHRHS 793

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             +   E + G  R+   R  RR   +    +    +     +   +         D   
Sbjct: 794 SSSRHGERNGGEGRRESSRDGRREGESRRDSSRDGGEGRRESSRDGEGRRESSRDGDGRR 853

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            +  E       ++ D         + ++      P  KK+RW
Sbjct: 854 ESSGEGRREATRDDGDSRKEGTREAKNDNFAIPEPPKRKKSRW 896


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 9/170 (5%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P          ++ 
Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNASSENA 411

Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
             +E+  G    + +RR        + +T+   AG        Q       D      + 
Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRAHSKPDDRKPNGNK 471

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            N N          ++ +   P  +       N++     K +   ++ +
Sbjct: 472 PNGNKPNGNKPNGNKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 517


>gi|325118225|emb|CBZ53776.1| putative splicing factor, arginine/serine-rich 8 [Neospora caninum
           Liverpool]
          Length = 1184

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 36/149 (24%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
              G      S             +DE      + E  E+ +      E+     + +R 
Sbjct: 198 DGPGESESVRSPREGAKGRGGSQSEDEDRDVSEEREETEERETQRGEREAEDEGGRTQRS 257

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
           RRR+    +  ++         +     S +      +       E  A    E      
Sbjct: 258 RRRQAFGREDEESDRRKRSREDEAETRRSSETPGVKREEDALEDGETSASEEAEAGAHPR 317

Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                      ++ +D         K R+
Sbjct: 318 AASPATARRQRSAGTDGTETPGGTRKGRE 346


>gi|301604702|ref|XP_002932016.1| PREDICTED: protein kinase C delta type-like [Xenopus (Silurana)
           tropicalis]
          Length = 483

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 5/156 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +       K   + +A + D  +    +          E+++         E    
Sbjct: 12  SQTPEEKEPLQDKGCMEKKAKNQDGEVFPTDKPNLKEKTSPDENMKMSPCGEKPPEDGTN 71

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            RKR ++   ++  +      +  + S  ++               ++ +L  +      
Sbjct: 72  KRKRSKKPTEKKKDSQEERKSLSDETSKPESKKRKKDKEQKNEKKTSSEDLQSSSYGRSK 131

Query: 688 ENYD-VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           E  D        +P++    S+     KK+R   RR
Sbjct: 132 EQEDNKEKKRPRSPDLLEDESAK----KKSRVEGRR 163


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 9/170 (5%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P          ++ 
Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411

Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
             +E+  G    + +RR        + +T+   AG        Q   +   D      + 
Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRANSKPDDRKPNGNK 471

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            N N          ++ +   P  +       N++     K +   ++ +
Sbjct: 472 PNSNKPSGNKPNGNKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 517


>gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
 gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
          Length = 753

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 39  KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98
            G +Y  KV  + P    AFV++   + G L   EI          D + L         
Sbjct: 665 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 712

Query: 99  DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
           + + +   +   D          +V       QE  E+   
Sbjct: 713 EGDEIDVKLLDIDPKTGKFKLSRKVLLPRPERQERPEKKEK 753


>gi|325119213|emb|CBZ54767.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 2302

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 9/143 (6%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           KG    A   +  K     +APS   + E   + +      +  S E  +        TG
Sbjct: 553 KGQRASAASGSPKKGKGRRRAPSDVDSAEREEKPKPRRERKQDASRERKKSRGKPSGPTG 612

Query: 627 -VIRKRRRRRR------RRRPATDHHDAGVVSDVS--SIQNVIDDSFDMYMEPSDITNHN 677
                RRRR R      RR+P   +            S  +++  S  +    S    ++
Sbjct: 613 GAAGSRRRRERTVKAQARRQPNLQNQAESNDRPPRFASPASLVTVSASVKTGRSPAGRNS 672

Query: 678 LLENGAHGFTENYDVSIPPVSTP 700
               GA        VS+P    P
Sbjct: 673 RHGAGAVEVEVEGRVSVPESPVP 695



 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 42/176 (23%), Gaps = 10/176 (5%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
               +     +              +                +  D  L    K++  ++
Sbjct: 313 SPTFSTPDAAVTLIDSRAEEGLEERQPDFVPATRESGSGETGLQTDTGLKQGLKAKKGDE 372

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                   +  G   K  + + +R       +     D        D       +P  + 
Sbjct: 373 EAKRGKESKEKGSAGKELKSQEQRTAGAKQAEREKERDRRRATGKRDP---EQKKPRRVQ 429

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTP-------EMESSNSSSDPIVKKTRWWKRRK 723
           + +   +     T   D       +P          +  S+  P  ++   WKRR+
Sbjct: 430 SESPRFSAGLLGTSRTDAVPQVPPSPGSPGTARRNTADKSAKKPNQRRNVLWKRRR 485



 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 34/142 (23%), Gaps = 10/142 (7%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
             GS +    + +  +      A     K +       ++ S E     + RR R++   
Sbjct: 538 ASGSMADRDGFPRGSKGQRASAASGSPKKGKGRRRAPSDVDSAEREEKPKPRRERKQD-- 595

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS----IP 695
            A+                    +         +      +       E+ D       P
Sbjct: 596 -ASRERKKSRGKPSGPTG---GAAGSRRRRERTVKAQARRQPNLQNQAESNDRPPRFASP 651

Query: 696 PVSTPEMESSNSSSDPIVKKTR 717
                   S  +   P  + +R
Sbjct: 652 ASLVTVSASVKTGRSPAGRNSR 673


>gi|197303047|ref|ZP_03168095.1| hypothetical protein RUMLAC_01774 [Ruminococcus lactaris ATCC
           29176]
 gi|197297902|gb|EDY32454.1| hypothetical protein RUMLAC_01774 [Ruminococcus lactaris ATCC
           29176]
          Length = 908

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 40/171 (23%), Gaps = 21/171 (12%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW-----QDEALLPIPKSESLEDIQDNIV 620
           E+    +    T  +   + +    ++N          ++  +     +       D   
Sbjct: 151 ERTVRTERPAQTAGRTSGEGRPVRQERNDRPQRPGSDRENRPVRDSRDARGGRPNGDGRG 210

Query: 621 SEESTGVIRKRRRRRRRR-----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP----- 670
             +  G    R  R  R      R   D  +           N  +D  D    P     
Sbjct: 211 PRQERGPRDNRDARGGREQGFGGRDNRDGRNGQGSRPDRKNDNRRNDRADRDAAPIVEQQ 270

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPE------MESSNSSSDPIVKK 715
               N    +   +   E  D +              +E     + P  KK
Sbjct: 271 KSQRNKAKDKERDNKKKEYRDEAFEGKGKKGKKQKNVVEVKKPQNKPEEKK 321


>gi|289619154|emb|CBI54422.1| unnamed protein product [Sordaria macrospora]
          Length = 1448

 Score = 43.8 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 10/148 (6%)

Query: 585  SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT-D 643
             Q    D  +E     E        E   + +    ++++     +   R  +R   T +
Sbjct: 1056 QQKRKGDDTMEKEKGPEPQEQQGTQEEASNSRKRGATDDADADDDESSSRPNKRAKQTPE 1115

Query: 644  HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
                   +   S +N      D   +  +  + +               + P    P+  
Sbjct: 1116 PEQNPAENPSKSPKNKRRAEDDADYDNENDDSESSGRPSKRAKQTPEPENPPAEKPPQSP 1175

Query: 704  SSNSSSDPIV---------KKTRWWKRR 722
             +   + P           KK +   RR
Sbjct: 1176 QNKRKTPPPPDAAEPKTPAKKGKVSTRR 1203


>gi|156542514|ref|XP_001600391.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 1628

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 39/154 (25%), Gaps = 4/154 (2%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            + +E+      L +            +  K       ++   P  +        D    
Sbjct: 757 DWELERNRNATQLSSLSDSEQQSDVEKAQVKEPPRAQAEKPKPPDVRKRGRPRKTDKSPK 816

Query: 622 EESTGVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
             ++     +    R R+R R+ +T            S + +   +     + SD  +  
Sbjct: 817 PAASVPEEPKVPAKRSRQRSRQTSTSSPTRRNKKQPLSKETLTTTTTTSSDDGSDGGHRY 876

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
              +             PP  +   + S +    
Sbjct: 877 SDSDSDPLAQVKLPPPAPPSHSRRTQPSAADKKR 910


>gi|311266601|ref|XP_003131159.1| PREDICTED: m-phase phosphoprotein 8-like isoform 1 [Sus scrofa]
          Length = 853

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 4/151 (2%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
               E +      EK             +         D  +    +D       K    
Sbjct: 278 EADSEDSQPEHREEKQMKGARDKAEPDALPEAGFEQQQDGALSADEEDARAKRKKKRPRK 337

Query: 613 EDIQDNIVSEEST---GVIRKRRRRRRRRRPATDHHDAGVVSDVSSI-QNVIDDSFDMYM 668
            +      + E+       +  ++++R +       +A  ++  S   Q+      D   
Sbjct: 338 TEEPKESRTPENKSPLSEKKPVQKKQRNQDRGRSGAEAEKLAPASPPAQSGSRPGADSPE 397

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVST 699
           E  +   +   E        + D        
Sbjct: 398 EEKETQKNEPKEKYQKRQDLDKDEKGRREPK 428


>gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 503

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 17/201 (8%)

Query: 16  RVVVLRDNRVEEL-DFESEHK---KQIKGNIYLAKVTRVEPSLQ--AAFVDYGG-NRHGF 68
           R+ V+   ++EE+ + E +     K   G+I   KV R    +    AF+D GG    G 
Sbjct: 180 RI-VVSHRQLEEMREQERKETALAKLKVGDIVKGKVLR----MTTFGAFIDLGGIE--GL 232

Query: 69  LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128
           +   EI   +   P  + +   +                    +  P + +++E+     
Sbjct: 233 MHVSEISWQHIVRPQDELKKGQEIEVKILDIKGEKIALSRKVLLEDPFEVAMKELHEGDI 292

Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188
            +          A  ++   VE +   S     +       I   +K    + VQI++ +
Sbjct: 293 INCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDI---VKEGDWVQVQILRID 349

Query: 189 RGNKGAAVTTYLSLAGRYSVL 209
                 +++     A  +  +
Sbjct: 350 EDTHKISLSLKALEADPWDKI 370


>gi|72388472|ref|XP_844660.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360137|gb|AAX80557.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801193|gb|AAZ11101.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1378

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/224 (5%), Positives = 55/224 (24%), Gaps = 7/224 (3%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           ++ EE   +            +       ++ A   + E                     
Sbjct: 440 KAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARK-KAEEEAARKRAEEE 498

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
             +    +       +  +  +    +   +   ++ A     +  + +  ++    +++
Sbjct: 499 AARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKA 558

Query: 625 TGVIRKRRRRRRRRRPATDH------HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                +++  + R+R    +        A   ++  + +   ++         +      
Sbjct: 559 EEEAARKKAEKMRKRAQARNARMKAEEAARKKAEEEAARKRAEEEAARKKAEEEAARKRA 618

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            E  A    E              + +   +     +    ++R
Sbjct: 619 EEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEVARKR 662



 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/156 (5%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +          +  +    +   +   ++ A     +  + +  ++    +++  
Sbjct: 420 RSRMREKDTTAKKAEEAARKKAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEE 479

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +++      R   +   A   ++  + +   ++         +       E  A   
Sbjct: 480 EAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKK 539

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            E              + +   +    KK    ++R
Sbjct: 540 AEEEAARKKAEEEAARKKAEEEA--ARKKAEKMRKR 573



 Score = 41.5 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/225 (5%), Positives = 57/225 (25%), Gaps = 3/225 (1%)

Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556
              A  + +  +    +  A         +       ++ A   + E             
Sbjct: 564 RKKAEKMRKRAQARNARMKAEEAARKKAEEEAARKRAEEEAARKKAEEEAARK-RAEEEA 622

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
                     +    +       +  +  +    +   +   ++ A     +  + +  +
Sbjct: 623 ARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEVARKRAEEEAARKKAEEEAARKKAE 682

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           +    +++     +++  + R+R       A + ++ ++ +   +++     E       
Sbjct: 683 EEAARKKAEEEAARKKAEKMRKRA--QARKARMKAEEAARKKAEEEAARKKAEEEAARKK 740

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              E       E               +   ++    ++    K+
Sbjct: 741 AEEEAARKRAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKK 785



 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 5/221 (2%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R+ EE   +            +       ++ A   + E                 +   
Sbjct: 494 RAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEA 553

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
             K +  +A      K+   +QA +     E   + +A     +  + E+       EE 
Sbjct: 554 ARKKAEEEAARKKAEKMRKRAQARNARMKAEEAARKKAEEEAARKRAEEEAARKKAEEE- 612

Query: 625 TGVIRK---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               ++      R+R    A         +   + +       +  +           + 
Sbjct: 613 -AARKRAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEVARKRAEEEAARKK 671

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                              E E++   ++ + K+ +  K R
Sbjct: 672 AEEEAARKKAEEEAARKKAEEEAARKKAEKMRKRAQARKAR 712



 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/218 (6%), Positives = 45/218 (20%), Gaps = 2/218 (0%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R   E + +            +       ++ A     E             + A++   
Sbjct: 696 RKKAEKMRKRAQARKARMKAEEAARKKAEEEAARKKAEEEAARKKAEEEAARKRAEEEAA 755

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            +K     A      +           +                +    + +      E 
Sbjct: 756 RKKAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEE 815

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                ++R      R   +   A   ++  + +   ++         +       E  A 
Sbjct: 816 EAA--RKRAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAAR 873

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              E              + +   +     +    ++R
Sbjct: 874 KKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKR 911


>gi|332219906|ref|XP_003259100.1| PREDICTED: repetin-like [Nomascus leucogenys]
          Length = 896

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/164 (9%), Positives = 39/164 (23%), Gaps = 4/164 (2%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                  ++ +      +      +     S+ +      +DE        ++ ED Q  
Sbjct: 629 EQNHQRQDRQTHEDEQNHHRQDRQTHEDEQSHQRRDRQTHEDEQNRQRRDRQTQEDEQTR 688

Query: 619 IVSEESTGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              +  T    + R+RR R+           D     D  + Q     + +         
Sbjct: 689 QRRDRQTHEDEQDRQRRDRQTHEDEQNRQRRDRQTHEDEQNHQRRDRQTHEDEQNHQRRD 748

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                +       +            +   ++       ++ R 
Sbjct: 749 RQTHADEQNRQRQDRQTHEDEQNRQRQDRQTHEDEQNRQRRDRQ 792



 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 34/151 (22%), Gaps = 2/151 (1%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                  ++ +      +      +     +  +      +DE        ++ ED QD 
Sbjct: 643 EQNHHRQDRQTHEDEQSHQRRDRQTHEDEQNRQRRDRQTQEDEQTRQRRDRQTHEDEQDR 702

Query: 619 IVSEESTGVIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
              +  T    + R+RR R       +H      +      +   D      E +     
Sbjct: 703 QRRDRQTHEDEQNRQRRDRQTHEDEQNHQRRDRQTHEDEQNHQRRDRQTHADEQNRQRQD 762

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
                           +       +     +
Sbjct: 763 RQTHEDEQNRQRQDRQTHEDEQNRQRRDRQT 793



 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/187 (8%), Positives = 35/187 (18%), Gaps = 2/187 (1%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
               +                       N +R     +E             E       
Sbjct: 603 HQSWDRHSHEGQEGPCGTQDRRTHEDEQNHQRQDRQTHEDEQNHHRQDRQTHEDEQSHQR 662

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            ++ +             +     +  +      +DE        ++ ED Q+    +  
Sbjct: 663 RDRQTHEDEQNRQRRDRQTQEDEQTRQRRDRQTHEDEQDRQRRDRQTHEDEQNRQRRDRQ 722

Query: 625 TGVIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           T    +  +RR R       +H      +          D      E +           
Sbjct: 723 THEDEQNHQRRDRQTHEDEQNHQRRDRQTHADEQNRQRQDRQTHEDEQNRQRQDRQTHED 782

Query: 683 AHGFTEN 689
                  
Sbjct: 783 EQNRQRR 789



 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 42/157 (26%), Gaps = 4/157 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +      +      +     ++ +      +DE        ++ ED Q+    +  T
Sbjct: 622 DRRTHEDEQNHQRQDRQTHEDEQNHHRQDRQTHEDEQSHQRRDRQTHEDEQNRQRRDRQT 681

Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               + R+RR R+           D     D  + Q     + +              + 
Sbjct: 682 QEDEQTRQRRDRQTHEDEQDRQRRDRQTHEDEQNRQRRDRQTHEDEQNHQRRDRQTHEDE 741

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
             H   +    +       +   ++       ++ R 
Sbjct: 742 QNHQRRDRQTHADEQNRQRQDRQTHEDEQNRQRQDRQ 778


>gi|212696485|ref|ZP_03304613.1| hypothetical protein ANHYDRO_01023 [Anaerococcus hydrogenalis DSM
            7454]
 gi|212676505|gb|EEB36112.1| hypothetical protein ANHYDRO_01023 [Anaerococcus hydrogenalis DSM
            7454]
          Length = 1670

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 44/213 (20%), Gaps = 12/213 (5%)

Query: 508  EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
             +   +       V   + VV Y          E E  +   I +     L      + +
Sbjct: 1467 NKETGKLEVKEERVEPKNKVVEYGSKTDGEFKYESEKAYD--IIIRENPNLEAGKTNVIQ 1524

Query: 568  GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                     T     S   +       E   +   +      E      D     E    
Sbjct: 1525 EGKPGKTETTVKIENSKEVSRDTKTITEKQDKIIEIGTKNVCEIPPVKPDPEKPGEKDPE 1584

Query: 628  IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                        P     +          ++          +P      +  +    G  
Sbjct: 1585 DP--------TNPGEKDPEDPNKPGEKDPKDPEKPDEKDPKDPEKPGKEDPKDPEKPGEK 1636

Query: 688  ENYDVSIPPVSTPEMESSNSS--SDPIVKKTRW 718
            +  D   P    P+++        DP  +  + 
Sbjct: 1637 DPKDPETPGEENPKIQKPGKEDPKDPENQAKKT 1669


>gi|171696104|ref|XP_001912976.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948294|emb|CAP60458.1| unnamed protein product [Podospora anserina S mat+]
          Length = 7657

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 16/158 (10%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E     + +V    K+    +  + D+  +      +     K E  E            
Sbjct: 770 EWIEQQERIVREQRKIIYQQERVANDEREKAERDRRSRDANQKREREEKRALEASGGREP 829

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++R R RR+              DV  +     D  D    P+     + +  G   
Sbjct: 830 SRDKERSRDRRK--------------DVIVVVEGRPDVADSVPAPAPTPARSEVSKGKER 875

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E       P    +  +   S  P VKK    +RR+
Sbjct: 876 --EVAPPPSAPALDEKKPAGADSLAPAVKKKSKEERRQ 911



 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 43/175 (24%), Gaps = 4/175 (2%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                L     Y E+    Q +          ++     ++   V   E      + E  
Sbjct: 702 RTSPSLERDDGYKERMRLEQEVKRHREDSERHAREEQRLRDEYEVRMKEIREKAEEEERR 761

Query: 613 EDIQDNIVS-EESTGVIRKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
              +       E    I + +R+   ++ R    +   A             +      +
Sbjct: 762 AREEKKKQEWIEQQERIVREQRKIIYQQERVANDEREKAERDRRSRDANQKREREEKRAL 821

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           E S     +  +  +    ++  V +             +  P   +    K R+
Sbjct: 822 EASGGREPSRDKERSRDRRKDVIVVVEGRPDVADSVPAPAPTPARSEVSKGKERE 876


>gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
           3523]
          Length = 693

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 40  GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
           G +Y  K+ ++  S   AFV+  G++ G+LPF EI
Sbjct: 625 GQVYKGKIVKLLDS--GAFVNLLGSQDGYLPFSEI 657


>gi|226293090|gb|EEH48510.1| RNA exonuclease [Paracoccidioides brasiliensis Pb18]
          Length = 669

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 40/125 (32%)

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
             ++   +P+    +   + +N+    +      R+RRR      T           +  
Sbjct: 29  ADKEPVPVPVAPLPASTPVPENVAPATAADEGPVRKRRRVDATTDTKPPLPSSTKTETKS 88

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +N  D       E  + T H   EN     +    VS PPVS       +    PI  ++
Sbjct: 89  ENTRDVVVKERQENGNSTYHLYRENAQTLRSVTKAVSPPPVSRRSTSEVSQGKTPISSRS 148

Query: 717 RWWKR 721
              K 
Sbjct: 149 DTVKP 153


>gi|302693481|ref|XP_003036419.1| hypothetical protein SCHCODRAFT_254872 [Schizophyllum commune H4-8]
 gi|300110116|gb|EFJ01517.1| hypothetical protein SCHCODRAFT_254872 [Schizophyllum commune H4-8]
          Length = 472

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 8/183 (4%)

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
           N     +   + + GV   V++    +        G  V++           S +P+   
Sbjct: 199 NYDDKLVSCIKRKCGV---VIVDPPSSSSEDGASNGRSVRSRGRKSRVFARTSPSPARST 255

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                     + P PK      + ++   +E      K +++RR+R+PAT    +  +  
Sbjct: 256 RSRSRVGMSPMRPSPK----RKLNESDEEQEEVSDAEKPQQKRRKRQPATKASPSTSLKP 311

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            S   +      +   + +     +          E    +    + P+       S   
Sbjct: 312 TSKS-SGSKPLTERKPKATPTKPRSRAAKAQQDEEEGGAATEVENNPPKRRGRPPGSKNK 370

Query: 713 VKK 715
            K+
Sbjct: 371 PKE 373


>gi|255722373|ref|XP_002546121.1| hypothetical protein CTRG_00903 [Candida tropicalis MYA-3404]
 gi|240136610|gb|EER36163.1| hypothetical protein CTRG_00903 [Candida tropicalis MYA-3404]
          Length = 943

 Score = 43.8 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 61/192 (31%), Gaps = 9/192 (4%)

Query: 534 QKRATIVEY-EARFGVSINVVIGIE--LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           +   TI +  +     +I         L       ++   ++ +      V  +      
Sbjct: 723 EMDDTIQQIVQEESKETIIKEPENHQELEPNQDNAQEHEMIEEVKECDPIVPIEEYIKRP 782

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           ++ ++ +   +        + +++       +     I +R     RR+ + D +     
Sbjct: 783 EEEVKVIQVKKPERAASTKKRVKEESIKKQKDTEAKPIERRHTIASRRQNSHDENKENKE 842

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
           +  +  +N            S  +N +L+E   +  T +       +  P      S+  
Sbjct: 843 TKDAKKRNRFSLLSFYSTYNSSSSNISLVEPTTNSSTNSTVTPKKKILEP------SNDA 896

Query: 711 PIVKKTRWWKRR 722
            I+KK +  ++R
Sbjct: 897 NIMKKEQQQQKR 908


>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
 gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
          Length = 714

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 11/116 (9%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEPSLQ-AAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88
            E   K    GN YL KVTRVE      AFV+    + G +          ++P   R+ 
Sbjct: 609 IEDVTKDLEVGNTYLGKVTRVE---NYGAFVELAPGKVGLVHIS-------KLPPELREN 658

Query: 89  LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144
           + ++  ++      + +    G   +       E       +     +      ++
Sbjct: 659 IFEKIKVSDLIPVKIVEFDQFGRPKLSRIDVTREEEKKLRETGGFYSQPEKEKKDE 714


>gi|308388888|gb|ADO31208.1| IgA1 protease [Neisseria meningitidis alpha710]
 gi|325129839|gb|EGC52646.1| IgA-specific serine endopeptidase [Neisseria meningitidis OX99.30304]
 gi|325136077|gb|EGC58687.1| IgA-specific serine endopeptidase [Neisseria meningitidis M0579]
          Length = 1827

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%)

Query: 494  RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            + Q + A  + R   E   +                ++      ++  +  E   R    
Sbjct: 1030 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1088

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +     V+A                  K                +
Sbjct: 1089 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1139

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664
            E     +        T   + +R R+RR  P     A+               NV     
Sbjct: 1140 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1198

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +           E  A    E    +    +  + E+  +         R    RK
Sbjct: 1199 QAELVRRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1257


>gi|300681006|sp|Q0CT11|CREB_ASPTN RecName: Full=Probable ubiquitin carboxyl-terminal hydrolase creB;
           AltName: Full=Carbon catabolite repression protein B;
           AltName: Full=Deubiquitinating enzyme creB; AltName:
           Full=Ubiquitin thiolesterase creB; AltName:
           Full=Ubiquitin-hydrolyzing enzyme creB; AltName:
           Full=Ubiquitin-specific-processing protease creB
          Length = 768

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 6/145 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P  A                   +++   +        K+   E  +     +E+T   
Sbjct: 553 KPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKERERQRRKEQEATRKE 612

Query: 629 RKRRRRRRRRRP------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           ++ R R  +RR       A +   A    +    Q    D                 ++ 
Sbjct: 613 QEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGRSGHGLSRLKRGSKSF 672

Query: 683 AHGFTENYDVSIPPVSTPEMESSNS 707
           +H  +++ D  +P  S P +   NS
Sbjct: 673 SHRLSKDKDTRVPSSSNPGVPDPNS 697



 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 5/152 (3%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
               +T          P+    +  + +  ++   PK   L+  ++    E+      K 
Sbjct: 538 THYEHTDTNSAPSIPKPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKE 597

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVID-----DSFDMYMEPSDITNHNLLENGAHGF 686
           R R+RR+       +    +  +  +   +     ++        D  N    ++   G 
Sbjct: 598 RERQRRKEQEATRKEQEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGR 657

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
           + +    +   S       +   D  V  +  
Sbjct: 658 SGHGLSRLKRGSKSFSHRLSKDKDTRVPSSSN 689


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 43/178 (24%), Gaps = 21/178 (11%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P       E+ Q  
Sbjct: 352 ASELFAIERLIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTA 411

Query: 619 IVSEESTGVIRKRRRRRRRRRPATD-------------HHDAGVVSDVSSIQNVIDDSFD 665
                      KRR     +    +             + D     +     N  +++  
Sbjct: 412 EKKNSGGNNKPKRRFNSDNKNGKGENKSGKGGAGKPKGNRDGQARPNGKPSGNKPNNNQS 471

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +P    N N  +   +          P    P     ++      K +   ++ +
Sbjct: 472 GANKPGVNKNGNGGKPSGNR--------KPNSGKPAGAKPSNGKPSGNKPSGQRRKPR 521


>gi|325202504|gb|ADY97958.1| IgA-specific serine endopeptidase [Neisseria meningitidis M01-240149]
          Length = 1816

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%)

Query: 494  RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            + Q + A  + R   E   +                ++      ++  +  E   R    
Sbjct: 1019 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1077

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +     V+A                  K                +
Sbjct: 1078 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1128

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664
            E     +        T   + +R R+RR  P     A+               NV     
Sbjct: 1129 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1187

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +           E  A    E    +    +  + E+  +         R    RK
Sbjct: 1188 QAELVRRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1246


>gi|225683726|gb|EEH22010.1| RNA exonuclease [Paracoccidioides brasiliensis Pb03]
          Length = 664

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 40/125 (32%)

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
             ++   +P+    +   + +N+    +      R+RRR      T           +  
Sbjct: 29  ADKEPVPVPVAPLPASTPVPENVAPATAADEGPVRKRRRVDATTDTKPPLPSSTKTETKS 88

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +N  D       E  + T H   EN     +    VS PPVS       +    PI  ++
Sbjct: 89  ENTRDVVVKERQENGNSTYHLYRENAQTLRSVTKAVSPPPVSRRSTSEVSQGKTPISSRS 148

Query: 717 RWWKR 721
              K 
Sbjct: 149 DTVKP 153


>gi|33860623|ref|NP_892184.1| hypothetical protein PMM0063 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633565|emb|CAE18522.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 310

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/187 (9%), Positives = 45/187 (24%), Gaps = 2/187 (1%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
            N+      ++E     S       +  +  +   +               S  +    +
Sbjct: 112 RNRFNDDYNQFEDSDRPSRRFKPQDDDLEDDYMEARSQRRNISRAIPESAVSRRRPSLRE 171

Query: 592 KNIECVWQDEALLPIPKSE--SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
            N     + +      +    S ED + +     S+    KR  R    +  +   +   
Sbjct: 172 SNQFENEEPKRRRNRSEDNRMSNEDRRASFGERRSSRSEIKRGSRPLSNQEVSRKSNNSS 231

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
           + D S+  N    S       ++           +   +         S      + +  
Sbjct: 232 LKDASTSSNKPTRSSIRSQTSTEKVEDASFSTNINEVKKPRQARSSAASARSTSKNKTGR 291

Query: 710 DPIVKKT 716
             +  K 
Sbjct: 292 YTVGTKK 298


>gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 716

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 39  KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98
            G +Y  KV  + P    AFV++   + G L   EI          D + L         
Sbjct: 628 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 675

Query: 99  DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
           + + +   +   D          +V       QE  E+   
Sbjct: 676 EGDEIDVKLLDIDPKTGKFKLSRKVLLPRPERQERPEKKEK 716


>gi|302421452|ref|XP_003008556.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261351702|gb|EEY14130.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 841

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 41/168 (24%), Gaps = 1/168 (0%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                     ++            +     +    DK  +   +D         ++    
Sbjct: 605 DSRRQAEKEAKRDLKTYEQAVKNREKAIKERQKLADKRRKKAEKDTQKSEKEAGKAQAKS 664

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
                ++      ++R+   +R + A D        D   +            +PS+   
Sbjct: 665 HTREQAQREAEAEQRRQEAEQRAKEAADREREAAERDGRPMPAHEAQQQQQQQQPSNEQC 724

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +N   G   +        +  E  +   +  P  ++      R+
Sbjct: 725 QADTDNTDRGREGSPSRGRTTTAEREARAIE-AKKPAKERKFCVLPRR 771



 Score = 38.8 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/188 (9%), Positives = 44/188 (23%), Gaps = 19/188 (10%)

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
            + +  + E      +          +    E+            K    S+  +     
Sbjct: 603 DKDSRRQAEKEAKRDLKTYEQAVKNREKAIKERQKLADKRRKKAEKDTQKSEKEAGKAQA 662

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
           +   +++A                          ++R+   +R + A D        D  
Sbjct: 663 KSHTREQAQREAEA-------------------EQRRQEAEQRAKEAADREREAAERDGR 703

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
            +            +PS+       +N   G   +        +  E  +  +      +
Sbjct: 704 PMPAHEAQQQQQQQQPSNEQCQADTDNTDRGREGSPSRGRTTTAEREARAIEAKKPAKER 763

Query: 715 KTRWWKRR 722
           K     RR
Sbjct: 764 KFCVLPRR 771


>gi|57900437|dbj|BAD87730.1| putative THO complex 2 [Oryza sativa Japonica Group]
          Length = 1843

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%)

Query: 536  RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593
            R      E R G  I       L  +   IE+          + G +  +  +       
Sbjct: 1552 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1611

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
               + +        + +SL        S     V  +R     RR  +T H+        
Sbjct: 1612 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1671

Query: 654  SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               +     N      D      +       E+     ++  D      S  + ES  +S
Sbjct: 1672 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1731

Query: 709  SDPIVKKTRWWK 720
            +    K  R   
Sbjct: 1732 ASKRRKIKRDQS 1743


>gi|118396776|ref|XP_001030725.1| hypothetical protein TTHERM_01026260 [Tetrahymena thermophila]
 gi|89285038|gb|EAR83062.1| hypothetical protein TTHERM_01026260 [Tetrahymena thermophila SB210]
          Length = 2822

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 78/640 (12%), Positives = 189/640 (29%), Gaps = 22/640 (3%)

Query: 84   SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
             D  A+ +E    Q              V +   + L++     + + + EE      +N
Sbjct: 612  EDDMAIYREYERQQAADRMNQRQSYLEQVELQKHYELKKSKSEESQTPKKEENQTAKGDN 671

Query: 144  DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT--TYLS 201
               S    V     +D  +K    +      K    + +   +E+   K    +  T  +
Sbjct: 672  AQPSQTLGVSSIRFQDSSQKQNVLFVQMNSKKLDDDIQMDEEEEDSIKKNKPTSENTEEN 731

Query: 202  LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261
             A   +V+ P     +  S+   N +    +       +     G+I+   G+  +  +I
Sbjct: 732  QANSQNVIDP----TKQSSQYNNNYISDNPIIREIME-KYSPTKGLIITPEGSIVSPSKI 786

Query: 262  KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321
            +   +  +     +       V       E  + ++ I +       +  +  E      
Sbjct: 787  EE--KDHLIHLKPIGTDPQIDVVIERKVIEPLIEEKHISESDLNTPQKEKIVEEAQNNNN 844

Query: 322  KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVII-----NQT 376
            ++  + +    +                  + ++D   Q    + S   +          
Sbjct: 845  EEQQQGIDQDQSSKQAASNLADDGDEIQERKQEIDQTEQQAHKVSSANNLDRFNEDEEID 904

Query: 377  EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK-- 434
            ++ V   V  G +  +   ++   Q      E+I ++  ++   G++  + I    +K  
Sbjct: 905  QSKVKSSVELGTNVDQANPQEIQNQVKSNTDEQIEKEDNVKQQEGIVENNPIQSSPEKPN 964

Query: 435  NNRSVEKKLKESLKKDRARVQVGAIS-NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            N   +E    +  K+D     VG +S        S    +      +++     KG    
Sbjct: 965  NIIELENAEIKENKQDSESQNVGVVSERLNHFMSSISNAQVGDRNKSSESNLK-KGFQKK 1023

Query: 494  RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
             S S    S  + +++ L      N+     S+      N++     + E +  V   V 
Sbjct: 1024 PSSSYSPSSHKKEIDQNLFSPKKANVNQFIPSE-PTKQENEEVKDQDQIEEKAEVKQEVK 1082

Query: 554  IGIE---LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
            +  +          +E         ++  +V SD +    + N   + ++E ++   ++E
Sbjct: 1083 VEEQQVDDEQADNKVEVIKIQDDHDSSQDEVSSDVKQIEVNHNEIEIKKEEQIIQSEQTE 1142

Query: 611  SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              ++       +E    I K +                  S++   +   +       + 
Sbjct: 1143 LKQEANQQESEQEQHIEIIKDQEDDDEEEDNKVEQKTEDSSNLQKQEVKSEQGLQAMQQE 1202

Query: 671  SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
                     +N      E  +  +      E E      D
Sbjct: 1203 QKEEIKLQQQNTETVQDEIKNEVLETDKKIETEEKQQIKD 1242


>gi|109947448|ref|YP_664676.1| hypothetical protein Hac_0899 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714669|emb|CAJ99677.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 415

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 49/182 (26%), Gaps = 3/182 (1%)

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596
             +V+ E R  V I        A +     K   ++       K   +++  +     E 
Sbjct: 234 DALVKKEKRKEVRIEKREEKVDARENKQEIKQEAIKPSHKEPKKANQNTENATQQSIKEN 293

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
               +       + +LE+       ++      +RR +  R++   +             
Sbjct: 294 NISPKGTQESKNAPTLEEKNYQKAEKKLDATEERRRLKDERKKAKAEQRAREFEQRAREH 353

Query: 657 QNVIDDSFDMYME--PSDITNHNLLENGAHGFTENYDVSIPPVSTPEME-SSNSSSDPIV 713
           Q   +   +   +   S++ +            E    +       E E      +    
Sbjct: 354 QEKDEAELEERRKALESNLKDERKKAKAEQRAREFEQRAREHQEKDEAELEERRKALESN 413

Query: 714 KK 715
           KK
Sbjct: 414 KK 415


>gi|167840765|ref|ZP_02467449.1| serine/threonine protein kinase [Burkholderia thailandensis MSMB43]
          Length = 520

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 3/156 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P   +        +  + P+ D+                S       D  V  ++  +  
Sbjct: 319 PSPHVAPPASPAQAQPREPAGDREAGAAEDGAQRAATSGSPDARRRDDADVGADAAAMRL 378

Query: 630 KRRRRRRRRRP--ATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              R R+ R P  + +  ++       S+              P    + +  E G    
Sbjct: 379 DVERARQSRPPLESQESQESASYRRGDSAPAAAERAGGASAAPPQQPPSTDDREAGPLRP 438

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             ++  S+ P      E       P   +T W  RR
Sbjct: 439 RADHAPSLSPSREHAGERDPLPPRPAAARTGWRDRR 474


>gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Saccoglossus kowalevskii]
          Length = 1091

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 3/128 (2%)

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           ++ S +++       E      KS+  +  +             + R  +R R  + D  
Sbjct: 117 RSKSRERDHRRSKSKERDHRRSKSKERDHRRSKSKEHVHRRSKSRERDHKRSR--SRDRE 174

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME-S 704
           +    +     +     S +     S                E    +  P    E +  
Sbjct: 175 NKRSETRPQERRRSRSKSKERRKSRSKSRERRQDRKSPSRIKEREHRAKTPTKNTETKIK 234

Query: 705 SNSSSDPI 712
            + S  P 
Sbjct: 235 KDKSGSPA 242



 Score = 40.7 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 36/157 (22%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + S  +   +   K        S  K               +S S +       +     
Sbjct: 126 RRSKSKERDHRRSKSKERDHRRSKSKEHVHRRSKSRERDHKRSRSRDRENKRSETRPQER 185

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              + + + RR+  +            S I+     +             +   + A   
Sbjct: 186 RRSRSKSKERRKSRSKSRERRQDRKSPSRIKEREHRAKTPTKNTETKIKKDKSGSPALSK 245

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           ++   +S       +            +  +W   RK
Sbjct: 246 SKFSSLSPLTKELEQKRLEEEMQRRRERIEKWRLERK 282



 Score = 38.0 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/101 (9%), Positives = 26/101 (25%), Gaps = 7/101 (6%)

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +      + R  RR +    DH  +             +               +   + 
Sbjct: 114 DHRRSKSRERDHRRSKSKERDHRRSKSKERDHRRSKSKEHVHRRSKSRERDHKRSRSRDR 173

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +  +E               S + S +    +++  +RR+
Sbjct: 174 ENKRSETR-------PQERRRSRSKSKERRKSRSKSRERRQ 207


>gi|198476743|ref|XP_001357465.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
 gi|198137832|gb|EAL34535.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
          Length = 5605

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 3/133 (2%)

Query: 579  HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                 D    S         + +        +S+ D   +  S  S    ++   R RR 
Sbjct: 1468 ESPDYDDIPVSKIPRSANEDEKDPEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1527

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
              + D   A       S + +        + P      + ++        +        S
Sbjct: 1528 ANSEDGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPP---SPPPDSELDS 1584

Query: 699  TPEMESSNSSSDP 711
                 S N+    
Sbjct: 1585 NKRRSSRNTQRKK 1597



 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 8/130 (6%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I + +              DS   S         + +      +S   
Sbjct: 1468 ESPDYDDIPVSKIPRSANEDEKDPEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1527

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
             + +D   +  + G +  +  ++RR R     +        D +   +   DS     + 
Sbjct: 1528 ANSEDGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPSPPPDSELDSNKR 1587

Query: 671  SDITNHNLLE 680
                N    +
Sbjct: 1588 RSSRNTQRKK 1597


>gi|112382239|ref|NP_056101.5| synemin isoform B [Homo sapiens]
 gi|119622635|gb|EAX02230.1| desmuslin, isoform CRA_a [Homo sapiens]
          Length = 1253

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++          + +D  
Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           +      +  + +         +        ++   +   +       +  +  +  + D
Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577


>gi|46125719|ref|XP_387413.1| hypothetical protein FG07237.1 [Gibberella zeae PH-1]
          Length = 1057

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 12/231 (5%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +R        + R+  +   +  + +       D  +Y    K   + E E +   S+ 
Sbjct: 719 RLRITGKRLDHLERAFRKEESKKLSEDYAKQIEEDRKIYDQ-MKTQKLQESEQKHKESVE 777

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           +   +      +   + S  +   +   K   D++     +  +   +        K E 
Sbjct: 778 LKHRLSRLVPQYEEFRDSLHERRRDEFEKRRRDAERELEKQITQRKKEVRDRRLREKRER 837

Query: 612 LEDIQDNIVSEESTGVIRKRRR-RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
            E  ++   +EE     ++ +R R   R+            +                E 
Sbjct: 838 EEKERELQEAEERAAREKEEQRIRDEARKEELAKLKEQREKERQETLEKAALQQRREDEA 897

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                    +  A GF+            PE   S+ +  P+    +W +R
Sbjct: 898 LARRKAEKAQAPAAGFSRA----------PERTESSEARRPMFGAGKWRER 938


>gi|14211720|gb|AAK57487.1|AF359284_1 desmuslin [Homo sapiens]
          Length = 1253

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++          + +D  
Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           +      +  + +         +        ++   +   +       +  +  +  + D
Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577


>gi|270004992|gb|EFA01440.1| hypothetical protein TcasGA2_TC030701 [Tribolium castaneum]
          Length = 18024

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 11/166 (6%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            K    +  +    +   D      ++  +     E  +P P   + E +Q      E+ G
Sbjct: 5707 KEEIQEKEIIQEKQHVEDKTILEQEEQPKPSVPSEEEMPKPSLPTEEQVQTTEEKLETKG 5766

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              R R+         T      VV +      +I+   +M     +I      ++     
Sbjct: 5767 WRRGRKPEEVPESAETPQLKPTVVEEKPKQPKLIEKKEEMPWNKQEIVLKRTQKDKKEMV 5826

Query: 687  TENYDVS--IPPVSTPEMESSNSSSDPIVKK---------TRWWKR 721
             E  +     P     ++E   +  D   KK         TR W+R
Sbjct: 5827 KEEQEQVVLKPVKKETKVEEVITKEDDKPKKDELVHTEDKTRGWRR 5872



 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 59/243 (24%), Gaps = 13/243 (5%)

Query: 494  RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
            R   +   ++L+  E    + T                 + +  T++  E R  + I   
Sbjct: 4952 RRVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQ 5011

Query: 554  IGIE----LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +E+   V+                            +    + + 
Sbjct: 5012 AETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQ 5071

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS-----SIQNVIDDSF 664
            + +ED     + E      +K    R  RRP  D         V      S++     + 
Sbjct: 5072 KHVEDTTLLSLEEREKVTEKKEAETRGWRRPRKDDTSVERQKHVEDTTLLSLEEREKITQ 5131

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDV---SIPPVSTPEMESSNSSSDPIVKKTR-WWK 720
                E          +          D    S       +      +     K+T+ W K
Sbjct: 5132 KKEEETRGWRRPRKDDTSVERKHTTEDTTLLSREEQEKIKETKDAETRVEEEKETKPWRK 5191

Query: 721  RRK 723
             RK
Sbjct: 5192 PRK 5194



 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 4/212 (1%)

Query: 513  QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
            Q     I+     DV L     +   + + E      +++    ++       E  S  +
Sbjct: 4896 QRQTKEIVKEQIEDVQLKPSKIQSKEVEKLELE---KVDLKHRTKVVTGQKTEEISSLDR 4952

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             +      +    +    +K  +   +D           +ED     V +     I K+ 
Sbjct: 4953 RVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQA 5012

Query: 633  RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
              R  RRP  +         V     +  D  +   E  +              +     
Sbjct: 5013 ETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQK 5072

Query: 693  SIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723
             +   +   +E     ++    +TR W + RK
Sbjct: 5073 HVEDTTLLSLEEREKVTEKKEAETRGWRRPRK 5104


>gi|260832782|ref|XP_002611336.1| hypothetical protein BRAFLDRAFT_73272 [Branchiostoma floridae]
 gi|229296707|gb|EEN67346.1| hypothetical protein BRAFLDRAFT_73272 [Branchiostoma floridae]
          Length = 784

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 57/231 (24%), Gaps = 27/231 (11%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK------------RATIVE 541
           +        I R++E     +        ++ D    LL+ +              T+ +
Sbjct: 490 KEGQHGIGKIGRTLENIASAFRTPRTSAKSNKDDAEPLLDMEEGEGKGAASQSDSKTLTQ 549

Query: 542 YEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
                  ++  V     L      +++   ++   ++             D +      D
Sbjct: 550 LTHSSSGTLTEVTP---LPTPDQAVDRHLDMKNPSDSSLWRKRKHIPSVSDDSPAGEKDD 606

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                    E    +QD            +   RR R +      +    +   +   + 
Sbjct: 607 SGPQARLAGEKPGAVQDG-----------RNGNRRNRSQEREQGVEDNRRNRNDNDGALR 655

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                    P+ ++  N          E++D S       ++    S    
Sbjct: 656 HADSYSANRPATLSTENEQSPSKQQQQESFDDSSEKKKGTKLTRRESGRQK 706


>gi|198436904|ref|XP_002121320.1| PREDICTED: similar to nuclear receptor corepressor [Ciona
           intestinalis]
          Length = 2299

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 46/139 (33%), Gaps = 1/139 (0%)

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                + + + S+ +         A     +S+S +          ++G   ++++++  
Sbjct: 776 PETTEAATLSTSHIRTRRITAALAAAATPEESQSAKRAVSGDSPVSTSGEPAEKKQKKNE 835

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
           R+  +  ++    ++    +           +   + + +     +   +   + + PP 
Sbjct: 836 RKLKSHKNEKEAKTETGK-EQTKPRVEQTVDQTKKLESGDGKTTDSVDKSTPVEGAAPPA 894

Query: 698 STPEMESSNSSSDPIVKKT 716
           S  +  +  S    I KK 
Sbjct: 895 SKSKPVNPKSEKLEIKKKD 913


>gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
 gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
          Length = 711

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108
              DY Q+       +L+     +           
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 695


>gi|149037578|gb|EDL92009.1| rCG55466, isoform CRA_a [Rattus norvegicus]
 gi|149037579|gb|EDL92010.1| rCG55466, isoform CRA_a [Rattus norvegicus]
          Length = 333

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 41/160 (25%), Gaps = 3/160 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             ++                + ++    +        +       S+  E  +D   ++E
Sbjct: 145 KAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKE 204

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +     +   R R R    +   A    D        D   +   +    ++    +   
Sbjct: 205 ADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQ 264

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +         +   E +    DP  +K+R   + +
Sbjct: 265 KDRDRDKGKDRERRKSKNGEHT---RDPDREKSRDADKSE 301


>gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 687

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 590 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 639

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108
              DY Q+       +L+     +           
Sbjct: 640 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 674


>gi|218189603|gb|EEC72030.1| hypothetical protein OsI_04921 [Oryza sativa Indica Group]
          Length = 1792

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%)

Query: 536  RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593
            R      E R G  I       L  +   IE+          + G +  +  +       
Sbjct: 1501 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1560

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
               + +        + +SL        S     V  +R     RR  +T H+        
Sbjct: 1561 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1620

Query: 654  SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               +     N      D      +       E+     ++  D      S  + ES  +S
Sbjct: 1621 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1680

Query: 709  SDPIVKKTRWWK 720
            +    K  R   
Sbjct: 1681 ASKRRKIKRDQS 1692


>gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 20/96 (20%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109
              DY Q+       +L+     +            
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 696


>gi|261314344|ref|ZP_05953541.1| predicted protein [Brucella pinnipedialis M163/99/10]
 gi|261303370|gb|EEY06867.1| predicted protein [Brucella pinnipedialis M163/99/10]
          Length = 151

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                      +A   +K  +   +  A       E+ E +      E+     RK R R
Sbjct: 2   ETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTEEAAEAVITAEAEEKPEKPARKTRTR 61

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
           ++    A     A    +V   +              +  +   ++      T+   ++ 
Sbjct: 62  KKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETIAE 121

Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           P  + P + SS S  D   K++ WW+++
Sbjct: 122 PKSTEPVVTSSESE-DRKPKRSGWWQKK 148


>gi|326478012|gb|EGE02022.1| hypothetical protein TEQG_01062 [Trichophyton equinum CBS 127.97]
          Length = 1385

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 46/157 (29%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            EK            K  +  + P+ +   E             +E        +V E+  
Sbjct: 897  EKPQDDSPPAEDVVKEVAPPEQPAVEPVAEEEPAASPTEEPKTAEEPTPQPAPVVEEKPV 956

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              I++    +    P ++   +  + +  +    + ++        +  + +  +  +  
Sbjct: 957  EEIKEDPLPQAVEAPVSEDTASKPIIEEPAAVEDVPNAKAAEETAVESKSKSRSKERSKE 1016

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +++        STP  E    S     KK    + R
Sbjct: 1017 RSKDKRHKKHRRSTPAEEPPRPSKSSGEKKPSSRRPR 1053


>gi|242776785|ref|XP_002478901.1| DNA ligase Cdc9, putative [Talaromyces stipitatus ATCC 10500]
 gi|218722520|gb|EED21938.1| DNA ligase Cdc9, putative [Talaromyces stipitatus ATCC 10500]
          Length = 860

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 37/145 (25%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +     +         ++ Q          V +DE   P    +  + ++      +   
Sbjct: 41  RKEATTSEKAVAESKDTEGQDDVEINGDAPVAKDEPTSPTKGVKREQFVEAEESDSDIQS 100

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             ++R++  +  RP     +       S             +E                 
Sbjct: 101 ANKRRKKNSKSPRPKKTAKEVLAERPSSPKIAKKASGEVTPVEEDIDEPAEEPSASEEED 160

Query: 687 TENYDVSIPPVSTPEMESSNSSSDP 711
            E  ++    +   +    ++ +DP
Sbjct: 161 DEKPEIKKKQIEKIQATLKSTGNDP 185


>gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 735

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 39  KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLK-ESNIAQ 97
            G +Y  KV  + P    AFV++   + G L   EI          D + L   E    +
Sbjct: 628 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 675

Query: 98  TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
              E     +     T     S + + P      E  E       N
Sbjct: 676 EGDEIEVKLLEVDPKTGKFKLSRKVLLPKPEGYVERPERGERRDRN 721


>gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC
           BAA-895]
 gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895]
          Length = 722

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 20/96 (20%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 622 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 671

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109
              DY Q+       +L+     +            
Sbjct: 672 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 707


>gi|222619755|gb|EEE55887.1| hypothetical protein OsJ_04544 [Oryza sativa Japonica Group]
          Length = 1620

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%)

Query: 536  RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593
            R      E R G  I       L  +   IE+          + G +  +  +       
Sbjct: 1329 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1388

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
               + +        + +SL        S     V  +R     RR  +T H+        
Sbjct: 1389 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1448

Query: 654  SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               +     N      D      +       E+     ++  D      S  + ES  +S
Sbjct: 1449 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1508

Query: 709  SDPIVKKTRWWK 720
            +    K  R   
Sbjct: 1509 ASKRRKIKRDQS 1520


>gi|156543856|ref|XP_001606820.1| PREDICTED: similar to CG33715-PD [Nasonia vitripennis]
          Length = 7697

 Score = 43.4 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 58/641 (9%), Positives = 178/641 (27%), Gaps = 27/641 (4%)

Query: 86   RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
            ++AL  E  + Q+  +   +++         +   +E+           ++  +      
Sbjct: 1146 KRALSIERIVQQSKMKEPENNIKSESTISSTEIVSQELTVDGKELNTKSKDLPVINAPTN 1205

Query: 146  VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKE---ERGNKGAAVTTYLSL 202
               ++D   GS   +         I     ++  L V +  +                  
Sbjct: 1206 RLKIKDDIVGSGIQLKASELDYQHISNTSTSQTSLNVHLKSDDTWMDLLDEPITIDDDFD 1265

Query: 203  AGRYSVLMPNTSKGETISRKITNPVDRKNLK-----EIARGLEVPAGMGVILRTAGASRT 257
                +         + I ++ T   ++   +     +    +    G    +R       
Sbjct: 1266 RDISNNFKEEQETAKAIQQQKTKKEEQPQKQEPKKPKTKEPVTDKKGPAETVRPQNDDNM 1325

Query: 258  KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317
              + +++ +    +      +            +   +K  + +        +    +KG
Sbjct: 1326 VEKSEKEIDNKETIQKCETTVEPEKKVSQNKKPKKQAVKIELGEKEINKEKHLNQDNKKG 1385

Query: 318  YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377
             +   D  +       +     +           ++Q++   +      S+    +  TE
Sbjct: 1386 SKAQADEEEETQKEKTKKNELIKQEDKNNESEKQQIQIEKPKKPSEIQISKVEQALKHTE 1445

Query: 378  ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437
             L   ++   +  ++    D      ++  E+ +++ + ++     V         +   
Sbjct: 1446 ELKGNEIKESKRLQKSNDVDQIENEKIQIKEKKSKKHQQKNEQTPPVEIQSSDSNNEKVI 1505

Query: 438  SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497
              E+ ++++ K+D+    +   S     E   +++ ++  E         K    I    
Sbjct: 1506 LKEEPVRQTAKRDK---HIKQDSK----EEKSEKLVANKQEPKKLDLESEKRREQIAKPE 1558

Query: 498  SVAL--SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-----KRATIVEYEARFGVSI 550
                     +  E+   +       ++T + +      +     ++  I + E+R G S 
Sbjct: 1559 PQKDKSKPEKREEQEDEKEQPQKEDLNTQAPIAKVAKKEHFQVTRKEDIQKKESRKGKS- 1617

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
                      +    E    V   V    +V  + Q      N E + + E+     + +
Sbjct: 1618 QAKEEEIKEQENIKEETLKQVSQKVKADEQVTEEEQTKIKVLNRERIQKQESNQENFEEK 1677

Query: 611  SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              +  +     +       +++  R+ +      HD         I+ +  +      + 
Sbjct: 1678 LNKREKPESREQVPKTKDHQQQESRKGKSQKQQAHD----DKPKEIETLEQELQKQESQY 1733

Query: 671  SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
              +      +  A       D S    S  +     +  + 
Sbjct: 1734 EKLKEQETKKEEAQKQGSKEDESRKKESIIQKMEEITKKEG 1774



 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 46/157 (29%), Gaps = 6/157 (3%)

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             IE          + ++   + +    +   +   +DE+       + +E+I      +E
Sbjct: 1718 EIETLEQELQKQESQYEKLKEQETKKEEAQKQGSKEDESRKKESIIQKMEEITKKEGPQE 1777

Query: 624  STGVI------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                       + +  +   ++   +        + ++ + VI        E S+    +
Sbjct: 1778 QESKKGKSKKKQTKEDKPEEQKTMKEQPKKKESKNKNAKEQVIKQEELQKQESSNTELQD 1837

Query: 678  LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             + N     T++       V   + E S        K
Sbjct: 1838 EINNKKEPQTQDTKKEKCEVLVTDKEDSLKQVSKKQK 1874


>gi|325114097|emb|CBZ49655.1| f3f19.18, related [Neospora caninum Liverpool]
          Length = 877

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 48/198 (24%), Gaps = 32/198 (16%)

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLEDIQ 616
           L  + F+  +    +  V T  +     +    + +    +      +     ES +   
Sbjct: 677 LTPEEFHALRVLQAKRSVETAGRRPGAQKDDEEEHDRLLSLLSKTPGVEAGLDESEDPDS 736

Query: 617 DNIVSEESTGVI----------------RKRRRRRRRR--RPATDHHDAGVVSDVSSIQN 658
           D    EE                     ++R+ R R R    A      G  S       
Sbjct: 737 DASSDEEPERERNSLFVSSTELEGLAGRKRRQARERNRLKEEAKMERKRGGKSAPWPFAK 796

Query: 659 VIDDSFDMYMEPSDITNHN-------------LLENGAHGFTENYDVSIPPVSTPEMESS 705
              ++ +  +       H                +  A              S  +   +
Sbjct: 797 KQREAAEASLAADPSKKHKTVVTGNAPQKLKARNKPLAMVRQSRKLRDKKQQSVKQKLQN 856

Query: 706 NSSSDPIVKKTRWWKRRK 723
                  +KK++  + R+
Sbjct: 857 LKKQIKNLKKSQVGRPRR 874


>gi|115389692|ref|XP_001212351.1| ubiquitin carboxyl-terminal hydrolase 12 [Aspergillus terreus
           NIH2624]
 gi|114194747|gb|EAU36447.1| ubiquitin carboxyl-terminal hydrolase 12 [Aspergillus terreus
           NIH2624]
          Length = 757

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 6/145 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P  A                   +++   +        K+   E  +     +E+T   
Sbjct: 542 KPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKERERQRRKEQEATRKE 601

Query: 629 RKRRRRRRRRRP------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           ++ R R  +RR       A +   A    +    Q    D                 ++ 
Sbjct: 602 QEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGRSGHGLSRLKRGSKSF 661

Query: 683 AHGFTENYDVSIPPVSTPEMESSNS 707
           +H  +++ D  +P  S P +   NS
Sbjct: 662 SHRLSKDKDTRVPSSSNPGVPDPNS 686



 Score = 42.7 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 5/152 (3%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
               +T          P+    +  + +  ++   PK   L+  ++    E+      K 
Sbjct: 527 THYEHTDTNSAPSIPKPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKE 586

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVID-----DSFDMYMEPSDITNHNLLENGAHGF 686
           R R+RR+       +    +  +  +   +     ++        D  N    ++   G 
Sbjct: 587 RERQRRKEQEATRKEQEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGR 646

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
           + +    +   S       +   D  V  +  
Sbjct: 647 SGHGLSRLKRGSKSFSHRLSKDKDTRVPSSSN 678


>gi|195579882|ref|XP_002079788.1| GD21833 [Drosophila simulans]
 gi|194191797|gb|EDX05373.1| GD21833 [Drosophila simulans]
          Length = 1323

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 32/152 (21%), Gaps = 1/152 (0%)

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                        ++  S                  +  S +  + N  +  +    ++ R
Sbjct: 1139 QRRRDNSTGRERNRENSSYDRERKRENSSYDRERNRESSYDKERKNRNALANDRQRKRDR 1198

Query: 633  RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG-FTENYD 691
             R   R P  ++         SS         +              + G      E  D
Sbjct: 1199 SRSYERPPIRENSAPRERRVESSRSEKDSRRGERSSRNEKSDRGERSDRGERSDRGERSD 1258

Query: 692  VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                       +  +   +    K R   R +
Sbjct: 1259 RGEKSDRGERSDRGDRDKERNRAKERERDRDR 1290


>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 711

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108
              DY Q+       +L+     +           
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 695


>gi|72387327|ref|XP_844088.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360247|gb|AAX80665.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800620|gb|AAZ10529.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1063

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 52/191 (27%), Gaps = 18/191 (9%)

Query: 550 INVVIGIELADKLF----------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
           I++     +    +           + +      + +   +     +    ++N      
Sbjct: 149 ISIYGDPVVTPDEYTTYIMNLQPFRVVRSEARHFVTSQAEQQKQAVRTVGGERNERTRGA 208

Query: 600 DEALLPIPKSESLEDIQDNIVSEE-------STGVIRKRRRRRRRRRPATDHHDAGVVSD 652
             A L  P   + +  +               +G    R  RR R+R + D        D
Sbjct: 209 RSARLADPGDAADDGSRTPREGGSRAPRDGSQSGRDDSRGSRRFRKRQSADDDSKPARED 268

Query: 653 VS-SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
            S + ++      D    P    N    +       ++   ++   +    + + S  D 
Sbjct: 269 DSGAPRDDSQSGRDGSRGPRSARNRQAHDAERKSSRDDDSRTVRDDNNFANDDNRSGRDE 328

Query: 712 IVKKTRWWKRR 722
              + R  + +
Sbjct: 329 TRGRRRVREPQ 339


>gi|134097538|ref|YP_001103199.1| hypothetical protein SACE_0940 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910161|emb|CAM00274.1| hypothetical protein SACE_0940 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 289

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 30/150 (20%), Gaps = 4/150 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                          D   P+  +  E   +  A     +    +       ++ +    
Sbjct: 123 EAATKRRPLPKLPPEDGDTPTRKQAAEGRAKRSADRDARRDARRDAKLAAGSAKMAEREA 182

Query: 629 RKRR----RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
           ++      +R   R P       G            D               +       
Sbjct: 183 KRPPEGGAKRPPERDPRRGAAKRGDERGAGRPARDGDPRARGQAPGRGARGADPRGRAGD 242

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
              E    ++PP    +  +      P  K
Sbjct: 243 PRAEREGRAVPPGRGAQRPAPGRGRPPEPK 272


>gi|317145983|ref|XP_001821209.2| GPI-anchored cell surface glycoprotein [Aspergillus oryzae RIB40]
          Length = 962

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 7/184 (3%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +RA I   E      I V   + +      I++ S   +  ++     + + A S   +
Sbjct: 687 HERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAKSSKPD 746

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                  +     P   S     ++  +E +    R+R+       P     +       
Sbjct: 747 -RPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSSEKPK 805

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE------NYDVSIPPVSTPEMESSNS 707
           +    +I    ++   PS     N                 +   S  P  +P+  SSN 
Sbjct: 806 TLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTASSNP 865

Query: 708 SSDP 711
           ++ P
Sbjct: 866 TTTP 869



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 7/182 (3%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVN------TGHKVGSDSQAPSYDKNIE 595
            E  +     +    E   K   +++   V  +              S         + +
Sbjct: 682 MEDVYHERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAK 741

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
               D       +  +   I     S  +ST     + +RRR+                S
Sbjct: 742 SSKPDRPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSS 801

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                +             T             +    S          S+  S  P   
Sbjct: 802 EKPKTLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTA 861

Query: 715 KT 716
            +
Sbjct: 862 SS 863


>gi|297198371|ref|ZP_06915768.1| circumsporozoite protein [Streptomyces sviceus ATCC 29083]
 gi|197714429|gb|EDY58463.1| circumsporozoite protein [Streptomyces sviceus ATCC 29083]
          Length = 480

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 38/146 (26%), Gaps = 4/146 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +        +        ++  + D +       +         S  +   +       
Sbjct: 21  TRPDSDGQRADDSRTRPGGNEQGTDDTDDRPGGNRQGADDNRTRPSGNERGTDDTDARPG 80

Query: 626 GVI---RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           G        R RR      TDH DA   SD    ++          EP         +  
Sbjct: 81  GNRQGAEDNRTRRGGNEQGTDHTDARPDSDGQGAEDNRTRPSRNRHEPDGTGARQPQDTD 140

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSS 708
           AH   ++ D   P  + P   S N +
Sbjct: 141 AH-QAQDSDAHEPQRNDPRQSSGNHA 165


>gi|311272727|ref|XP_003133562.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Sus scrofa]
          Length = 527

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/182 (8%), Positives = 38/182 (20%), Gaps = 17/182 (9%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                  +    I +                  +  +  +      +D          S 
Sbjct: 346 QGNPRSKEVDKLIRRQQTNDRKQEERRPEPRHQETRTERERRSEKPRDRDSRDPATKHSS 405

Query: 613 EDIQDNIVSEEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
           +    +  +  S                     +K+R  RR      +H      S+  +
Sbjct: 406 DRGVPSERNSYSRAMNDRDYEMHIDVEHKHRDPKKKRGERRNSFSENEHRHRNRDSENFT 465

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +   +            ++ +  +NGA    E            +            K+
Sbjct: 466 RKERSNSREKSKKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRKEKSPTKQ 525

Query: 716 TR 717
            +
Sbjct: 526 KK 527


>gi|297301584|ref|XP_001093998.2| PREDICTED: uncharacterized protein C10orf12 [Macaca mulatta]
          Length = 1556

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/164 (9%), Positives = 37/164 (22%), Gaps = 2/164 (1%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                ++         +            +  +              P +           
Sbjct: 1390 PKAEVQSKRKRTEGSSPPDGKNKGPAVKASKEKHADGVTKTPAAKRPAARDRSSQPPKKT 1449

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            S +   V   ++   +   P+    +        SI +            S+ +     +
Sbjct: 1450 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGASESS-SRPQK 1508

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRWWKRRK 723
                  +     + P   TPE  ++        K  +   KRR+
Sbjct: 1509 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDSSHGKRRR 1552


>gi|194906985|ref|XP_001981464.1| GG11596 [Drosophila erecta]
 gi|190656102|gb|EDV53334.1| GG11596 [Drosophila erecta]
          Length = 955

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 35/164 (21%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
              F +       +      +            +     Q         S   +      
Sbjct: 593 RNRFPLSPIRGRGSPSGDRRRQQRSRSQNRRQDSPSQRRQMSPGRKRQDSPGRKRPSSTD 652

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                +   ++     R+R  +    D+       S    I DS             +  
Sbjct: 653 RKRRDSPERKREDSNDRKREASPKRKDSANRKMEDSQDKKIQDSSKQEDTAGKKRGDSPS 712

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +       +  D  +    +P  +       P  K+     RR+
Sbjct: 713 KKRKDSDKKRQDSPVKRQESPGRKRRRRKDSPERKRRDSPDRRR 756



 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 31/106 (29%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +  +   +   K+         D + +     +     P  +  +  +    S     
Sbjct: 671 REASPKRKDSANRKMEDSQDKKIQDSSKQEDTAGKKRGDSPSKKRKDSDKKRQDSPVKRQ 730

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
               R+RRRR+  P     D+       S      +S     + SD
Sbjct: 731 ESPGRKRRRRKDSPERKRRDSPDRRRKDSPARRRQESSGRRRQDSD 776


>gi|189523697|ref|XP_001341635.2| PREDICTED: titin [Danio rerio]
          Length = 28836

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 67/222 (30%), Gaps = 11/222 (4%)

Query: 492  YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
             ++  +  +       +   L+           ++    L N K+A IV  E ++  ++ 
Sbjct: 6232 TLKKVTKRSKEHQEDRDLISLKKAIKIHHEEPSTEEEALLRNVKKAEIVADEMKYSEAVT 6291

Query: 552  VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
                       + + + +          K+    +     K++    +    + + + + 
Sbjct: 6292 ----EVKLSSSYEVTEDTWSYETSTEAEKLSKCEEKKKEYKDVREKKEMTLEMGVKEDKF 6347

Query: 612  LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                +  I  E+   + +   ++  R  PA    +A  +  V      +         P 
Sbjct: 6348 KSKKETKIPKEKEPEIPQPTLKKVIRSIPAEKEKEAVKLKPVEKPDKAV-------AGPQ 6400

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              +N +  ++          +   P+S  ++E + +      
Sbjct: 6401 KDSNIDRSKDSIGVQKHERLLKDEPLSKKKIEVAATDQKAEE 6442


>gi|229076791|ref|ZP_04209703.1| hypothetical protein bcere0024_55620 [Bacillus cereus Rock4-18]
 gi|228706353|gb|EEL58614.1| hypothetical protein bcere0024_55620 [Bacillus cereus Rock4-18]
          Length = 507

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/165 (7%), Positives = 34/165 (20%), Gaps = 3/165 (1%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            F IE+                  +    +   +   +    +     +  E      V 
Sbjct: 92  EFKIEETRRKAKEEARKQAEAEARRKVEEEARKQAEVEARRKVEEEAKKQAELEARRKVE 151

Query: 622 EESTGV---IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           EE+        +R+     ++ A          +                          
Sbjct: 152 EEAKKQAEVEARRKAEEEAKKQAELEARRKAEEEAKKQVEAEAQRKAEKEAKKQAETEAR 211

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +       +    +       ++E          KK    ++R+
Sbjct: 212 RKVEEEARKQAELEACRKAEEKKLEEVRKRRLEEEKKIEEAQKRQ 256


>gi|308457811|ref|XP_003091269.1| hypothetical protein CRE_26828 [Caenorhabditis remanei]
 gi|308257606|gb|EFP01559.1| hypothetical protein CRE_26828 [Caenorhabditis remanei]
          Length = 616

 Score = 43.4 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/120 (7%), Positives = 28/120 (23%), Gaps = 3/120 (2%)

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
            +L   K E L  + +    +++      + +  + R             + +  +    
Sbjct: 128 PVLTEKKKEILRLVNEKAARDKAAKEKADQEKADQERDAKEKADKEKADKEKADKEK--- 184

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              +   +          E       +            + +   +  D   K+     R
Sbjct: 185 SDKEKADKEKSDKEKADKEKADKEKADKEKADKEKADKEKADKEKADKDKAAKEKVERDR 244



 Score = 41.1 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/138 (7%), Positives = 38/138 (27%), Gaps = 4/138 (2%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I +    +A  +   K  +D +    +++ +     E        E  +  + +    +
Sbjct: 136 EILRLVNEKAARDKAAKEKADQEKADQERDAKEKADKEKA----DKEKADKEKSDKEKAD 191

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                +++  + +  +   D   A          +      D   +     +  LL+   
Sbjct: 192 KEKSDKEKADKEKADKEKADKEKADKEKADKEKADKEKADKDKAAKEKVERDRELLKLVN 251

Query: 684 HGFTENYDVSIPPVSTPE 701
           +   ++        +   
Sbjct: 252 YKADKDRIAKEKKEADDR 269


>gi|221481034|gb|EEE19446.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2733

 Score = 43.4 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 7/177 (3%)

Query: 554  IGIELADKLF--YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPI 606
                  +  F   +E+     +    T ++V   S+     +      +           
Sbjct: 1845 ANEGRRENHFCAAVERPPESARRERGTRYEVQRRSRESQARRVSVEPGESRNPLPCSTEN 1904

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +S S          EE T    +R++   RR+ A     A   S   S     + +   
Sbjct: 1905 GRSSSPRGPTLRSSGEERTHTDERRKKTLTRRQKALLEQKAARESGGESRAEREETACTD 1964

Query: 667  YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +       +  E       E+   S         E      D  +  TR  KRRK
Sbjct: 1965 SQKRGGRNADDSREKQRGDAEESEAASEDSEDETSEEDDLKDEDFQLGSTRRTKRRK 2021


>gi|156543124|ref|XP_001605583.1| PREDICTED: similar to tpr repeat nuclear phosphoprotein [Nasonia
            vitripennis]
          Length = 1215

 Score = 43.4 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 48/182 (26%), Gaps = 5/182 (2%)

Query: 539  IVEYEARFGVS-INVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
            + + E +  +  I      E+    + + +EK               S  +     K  E
Sbjct: 860  MRQMEEQRKMEEIRRQKEEEMLQKRQEY-VEKTKSALVFGEMP-NEKSGKKGSKKGKTGE 917

Query: 596  CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
             +               E  ++    ++S     ++ R + +RR   +   +G     S 
Sbjct: 918  YISDSSGSGNEVDGAEEESSREKKQRKKSNKTKERKPRGKGKRRKGIESGGSGDDKPKSK 977

Query: 656  IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                     +     S               T + D S       E+ S + S     + 
Sbjct: 978  RGKKSGARKEKSQNKSIKECTVPKSRIISKETISTDESESDNERSEVRSGDESDTGAPRG 1037

Query: 716  TR 717
             R
Sbjct: 1038 KR 1039


>gi|297697561|ref|XP_002825920.1| PREDICTED: synemin-like [Pongo abelii]
          Length = 1253

 Score = 43.4 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 42/171 (24%), Gaps = 5/171 (2%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G ++N    +      + + + +  Q           D++        +     E+
Sbjct: 412 ENSYGKTVNSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYIAEDSTIARES 471

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                     + +         +        ++   +  T+       +  +  +  + D
Sbjct: 472 YQDRR-----DKVAAGASESTWSNERTVILGKKTEVKATTEQERNRPETIRTKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S +   E  ++    L +                    +     S  +  V
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577


>gi|238019394|ref|ZP_04599820.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
 gi|237864093|gb|EEP65383.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
          Length = 632

 Score = 43.4 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 28  LDFESEHK------KQIKGNIYLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77
           L+ E + K          G+ Y   V ++ P    AFVD GG    G L   +I   
Sbjct: 447 LEVERQAKLAEALKNINVGDNYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499


>gi|221508645|gb|EEE34214.1| epidermal growth factor, putative [Toxoplasma gondii VEG]
          Length = 2869

 Score = 43.4 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 16/146 (10%)

Query: 585  SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
             +    D+  E    D            +        EE  G  ++ R     R P+  +
Sbjct: 1549 GEERDEDEPQEERQDDR--------NPEKRKHRTSEDEEMLGTGKQVRPAENSRSPSVRY 1600

Query: 645  HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             + G       ++       +                 +   + +  VS       +   
Sbjct: 1601 GETGATRKDGKVEEKKPRGEEKEERNERKDTKRRAPEASEPASISSSVSPEKEGDRKEAH 1660

Query: 705  SNSSSDPIVKKT--------RWWKRR 722
            ++ +     ++          WW  R
Sbjct: 1661 ADGNKAKAQRRKAENLSVVESWWDER 1686


>gi|238491468|ref|XP_002376971.1| GPI-anchored cell surface glycoprotein, putative [Aspergillus
           flavus NRRL3357]
 gi|220697384|gb|EED53725.1| GPI-anchored cell surface glycoprotein, putative [Aspergillus
           flavus NRRL3357]
          Length = 956

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 7/184 (3%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +RA I   E      I V   + +      I++ S   +  ++     + + A S   +
Sbjct: 681 HERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAKSSKPD 740

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                  +     P   S     ++  +E +    R+R+       P     +       
Sbjct: 741 -RPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSSEKPK 799

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE------NYDVSIPPVSTPEMESSNS 707
           +    +I    ++   PS     N                 +   S  P  +P+  SSN 
Sbjct: 800 TLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTASSNP 859

Query: 708 SSDP 711
           ++ P
Sbjct: 860 TTTP 863



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 7/182 (3%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVN------TGHKVGSDSQAPSYDKNIE 595
            E  +     +    E   K   +++   V  +              S         + +
Sbjct: 676 MEDVYHERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAK 735

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
               D       +  +   I     S  +ST     + +RRR+                S
Sbjct: 736 SSKPDRPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSS 795

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                +             T             +    S          S+  S  P   
Sbjct: 796 EKPKTLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTA 855

Query: 715 KT 716
            +
Sbjct: 856 SS 857


>gi|123452668|ref|XP_001314290.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121896585|gb|EAY01732.1| hypothetical protein TVAG_108890 [Trichomonas vaginalis G3]
          Length = 1500

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 36/125 (28%)

Query: 599  QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
            +D     I   E  +   +     ES+   +    R++RR        +           
Sbjct: 1075 KDVPDTDIYMKERRKTSAERKQRRESSSSRKPSVERKQRRNSFEMESSSSRRPSQERKSR 1134

Query: 659  VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
             +    D         + +  +N     +               E  +SSS+ I K ++ 
Sbjct: 1135 RLSTENDSSSSNLVRKHSSKKKNEMKSSSSRKPSVERKQRRDSFEMESSSSNLIRKPSQE 1194

Query: 719  WKRRK 723
             K R+
Sbjct: 1195 RKSRR 1199


>gi|83769070|dbj|BAE59207.1| unnamed protein product [Aspergillus oryzae]
          Length = 759

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 7/184 (3%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +RA I   E      I V   + +      I++ S   +  ++     + + A S   +
Sbjct: 484 HERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAKSSKPD 543

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                  +     P   S     ++  +E +    R+R+       P     +       
Sbjct: 544 -RPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSSEKPK 602

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE------NYDVSIPPVSTPEMESSNS 707
           +    +I    ++   PS     N                 +   S  P  +P+  SSN 
Sbjct: 603 TLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTASSNP 662

Query: 708 SSDP 711
           ++ P
Sbjct: 663 TTTP 666



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 7/182 (3%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVN------TGHKVGSDSQAPSYDKNIE 595
            E  +     +    E   K   +++   V  +              S         + +
Sbjct: 479 MEDVYHERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAK 538

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
               D       +  +   I     S  +ST     + +RRR+                S
Sbjct: 539 SSKPDRPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSS 598

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                +             T             +    S          S+  S  P   
Sbjct: 599 EKPKTLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTA 658

Query: 715 KT 716
            +
Sbjct: 659 SS 660


>gi|237832747|ref|XP_002365671.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
 gi|211963335|gb|EEA98530.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
          Length = 2869

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 16/146 (10%)

Query: 585  SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
             +    D+  E    D            +        EE  G  ++ R     R P+  +
Sbjct: 1549 GEERDEDEPQEERQDDR--------NPEKRKHRTSEDEEMLGTGKQVRPAENSRSPSVRY 1600

Query: 645  HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             + G       ++       +                 +   + +  VS       +   
Sbjct: 1601 GETGATRKDGKVEEKKPRGEEKEERNERKDTKRRAPEASEPASISSSVSPEKEGDRKEAH 1660

Query: 705  SNSSSDPIVKKT--------RWWKRR 722
            ++ +     ++          WW  R
Sbjct: 1661 ADGNKAKAQRRKAENLSVVESWWDER 1686


>gi|296811606|ref|XP_002846141.1| translation initiation factor eIF3a [Arthroderma otae CBS 113480]
 gi|238843529|gb|EEQ33191.1| translation initiation factor eIF3a [Arthroderma otae CBS 113480]
          Length = 1084

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 16/301 (5%)

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488
            M+++++    + +LK+ L++ +  ++   +S   L E+   R+R+  ++          
Sbjct: 660 RMKDEQDRIR-QAELKKQLEELKTGIKGIDVSEIDLEELDSNRLRA--MKLAQLEKEKND 716

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
               IR  +     + R+     L++   +       D+ +Y   QK  T+   E +   
Sbjct: 717 LNERIRVTAKRFDHLERAYRREELKHLPEDYERQKKHDLEVYER-QKAETLAAAELKHKE 775

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
            + +   +      F   K S  +       +    ++     K  + V + +  +   +
Sbjct: 776 DVALKHRLSRLVPHFNKFKHSVTEKRHEEFERRRKAAEREFEAKKKQRVKEVQERIKRER 835

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
            E   + +      E      + R  R   R      +     +    Q  I D      
Sbjct: 836 MEREAEERRKREEAEREEREEQERAARDEERRRKLAEEKAAREE----QRRILDEKAAIQ 891

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK--------KTRWWK 720
           +  +      L     G  +      PP +  E   ++S+     +         T W  
Sbjct: 892 KQREEEVEKRLAAKRAGLADPRLSRAPPTAVAESSRTDSTERTAPRLNLTSRPGGTSWRD 951

Query: 721 R 721
           R
Sbjct: 952 R 952


>gi|149639735|ref|XP_001515527.1| PREDICTED: similar to KIAA1604 protein [Ornithorhynchus anatinus]
          Length = 921

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 39/148 (26%), Gaps = 3/148 (2%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQ---APSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            +E+           +   +  +    P      + V   +         + +D   +  
Sbjct: 762 KMERRGQETRAEEERNPEKNSERNVRDPHRRDGSKHVPDRDVSSDRNSHSTGKDRDRDKH 821

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
           ++ +      +++R  RR   +++      S      +   +         + ++    E
Sbjct: 822 ADFADKYGESKKKRGERRNSFSENERPRHRSKDRENLSRRKERSKSRERTRNDSSPQGEE 881

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSS 708
           +     +E         S    ES    
Sbjct: 882 DRYRNGSERRSGKPNRHSEQSRESRKHQ 909


>gi|221508627|gb|EEE34196.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1575

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 33/155 (21%), Gaps = 7/155 (4%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                          +D++ P      E   +         +    D             
Sbjct: 246 VKADTDAPGAVPWQHADAKKPRAPGKHEVDQKSGEAKADADNRPAGDASGGASQSGQHAA 305

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                 RRR +       +  ++       +   D  D               +G     
Sbjct: 306 ETDESHRRREKTKKEHSDEGALLRPKKKRGDKKADEGDESPTKKRKERPGEEGDGKTAKE 365

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +N       +          +  P+ ++ R  KRR
Sbjct: 366 QNKAREGGGL-------EGGAKKPLSRQKRLKKRR 393


>gi|221506970|gb|EEE32587.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2731

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 7/177 (3%)

Query: 554  IGIELADKLF--YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPI 606
                  +  F   +E+     +    T ++V   S+     +      +           
Sbjct: 1843 ADEGRRENHFCAAVERPPESARRERGTRYEVQRRSRESQARRVSVEPGESRNPLPCSTEN 1902

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +S S          EE T    +R++   RR+ A     A   S   S     + +   
Sbjct: 1903 GRSSSPRGPTLRSSGEERTHTDERRKKTLTRRQKALMEQKAARESGGESRAEREETACTD 1962

Query: 667  YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +    +  +  E       E+   S         E      D  +  TR  KRRK
Sbjct: 1963 SQKRGGRSADDSREKQRGDVEESEAASEDSEDETSEEDDLKDEDFQLGSTRRTKRRK 2019


>gi|81294210|gb|AAI07917.1| Ctr9 protein [Rattus norvegicus]
          Length = 493

 Score = 43.0 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 34/143 (23%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +K               SD       +       D+                   S+E +
Sbjct: 344 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 403

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +  R+RRR     +D+  A      S      +DS  +              +    
Sbjct: 404 DSDQPSRKRRRSGSEQSDNESAQSGRSPSGGSENENDSRPVSPSAESDHESEQGSDNEGS 463

Query: 686 FTENYDVSIPPVSTPEMESSNSS 708
              + + S P  S  E     S 
Sbjct: 464 GQGSGNESEPEGSNNEASDRGSE 486


>gi|326473167|gb|EGD97176.1| light-harvesting complex alpha subunit [Trichophyton tonsurans CBS
            112818]
          Length = 1470

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 46/157 (29%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            EK            K  +  + P+ +   E             +E        +V E+  
Sbjct: 982  EKPQDDSPPAEDVVKEVAPPEQPAVEPVTEEEPAASPTEEPKTAEEPTPQPAPVVEEKPV 1041

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              I++    +    P ++   +  + +  +    + ++        +  + +  +  +  
Sbjct: 1042 EEIKEDPLPQAVEAPVSEDTASKPIIEEPAAVEDVPNAKAAEETAVESKSKSRSKERSKE 1101

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +++        STP  E    S     KK    + R
Sbjct: 1102 RSKDKRHKKHRRSTPAEEPPRPSKSSGEKKPSSRRPR 1138


>gi|91088841|ref|XP_970807.1| PREDICTED: similar to enoki mushroom CG11290-PA [Tribolium castaneum]
 gi|270012338|gb|EFA08786.1| hypothetical protein TcasGA2_TC006477 [Tribolium castaneum]
          Length = 2385

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 39/154 (25%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                 ++    K+  ++Q     K         A      ++S         +  +   +
Sbjct: 1100 ETADIVIPQPEKIIIETQQGVKLKKGRKRKISTAPKTPKVAKSEPKTPQVTPNNPTKEEV 1159

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                  RRR RP+  +          + +N      D            +         +
Sbjct: 1160 EITSSGRRRTRPSKYNETTFADVKPKNHENNKRKRNDTSEPEVAEKKMKVEPEVKLVKCD 1219

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                   P  T   + +   +   V   RW +RR
Sbjct: 1220 EEVAKTQPKETQRPKRNVGGNKEKVAGERWSQRR 1253


>gi|297458228|ref|XP_001249355.2| PREDICTED: CWC22 spliceosome-associated protein homolog [Bos
           taurus]
 gi|297471567|ref|XP_002685317.1| PREDICTED: KIAA1604 protein-like [Bos taurus]
 gi|296490729|gb|DAA32842.1| KIAA1604 protein-like [Bos taurus]
          Length = 940

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 3/162 (1%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I K                  +  +  +      ++        + + +    +  +  S
Sbjct: 772 IRKQEINDRKQEERRPEHRHQETRTERERRSEKPRERDSRGSGTTYTSDRGIPSARNSCS 831

Query: 625 TGVIRKRRRRRRR-RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             V  + +  R    R   D        +  S       + D         + +  +N  
Sbjct: 832 RAVHDRDQEARVDLARNHGDPEKKRERRNSFSENEHRHRNRDSENFRRRDRSKSREKNKK 891

Query: 684 HGFTENYDVSIPPVSTPEMESSN--SSSDPIVKKTRWWKRRK 723
           H  + + D      +  + E  +  S      KK++  +R K
Sbjct: 892 HSGSRSEDDRYQNGAERQWEKPSRYSEQSGESKKSQDRRREK 933



 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 2/153 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E                   +            +         S ++ D       + + 
Sbjct: 788 EHRHQETRTERERRSEKPRERDSRGSGTTYTSDRGIPSARNSCSRAVHDRDQEARVDLAR 847

Query: 626 GVIRKRRRRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 ++R RR      +H      S+    ++               +  +  +NGA 
Sbjct: 848 NHGDPEKKRERRNSFSENEHRHRNRDSENFRRRDRSKSREKNKKHSGSRSEDDRYQNGAE 907

Query: 685 GFTENYDV-SIPPVSTPEMESSNSSSDPIVKKT 716
              E     S     + + +       P  +K 
Sbjct: 908 RQWEKPSRYSEQSGESKKSQDRRREKSPTKQKK 940


>gi|297598187|ref|NP_001045197.2| Os01g0916800 [Oryza sativa Japonica Group]
 gi|255673998|dbj|BAF07111.2| Os01g0916800 [Oryza sativa Japonica Group]
          Length = 1682

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%)

Query: 536  RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593
            R      E R G  I       L  +   IE+          + G +  +  +       
Sbjct: 1421 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1480

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
               + +        + +SL        S     V  +R     RR  +T H+        
Sbjct: 1481 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1540

Query: 654  SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               +     N      D      +       E+     ++  D      S  + ES  +S
Sbjct: 1541 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1600

Query: 709  SDPIVKKTRWWK 720
            +    K  R   
Sbjct: 1601 ASKRRKIKRDQS 1612


>gi|308459401|ref|XP_003092021.1| hypothetical protein CRE_29215 [Caenorhabditis remanei]
 gi|308254461|gb|EFO98413.1| hypothetical protein CRE_29215 [Caenorhabditis remanei]
          Length = 1005

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 39/146 (26%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q   +        S + S   N +     E +     +    ++    V       I
Sbjct: 618 RAPQKARSPRAVNDVASSSSSGSNNADPESAQEPMDAPEAAAQEPEVAPAPVDVADVPSI 677

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +  +RRRR        +  + +          D+ +    P  +               
Sbjct: 678 ARSTKRRRRTAGNGRAGNGRLHNVDPEPAPERMDAPEPIDAPEPMDAPEAAAQEPEEAAA 737

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714
             DV+ P   T     S S+  P ++
Sbjct: 738 PVDVATPAPPTRRRLQSASNGQPTMR 763


>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
           z3032]
 gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
           z3032]
          Length = 711

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 614 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 663

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108
              DY Q+       +L+     +           
Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 698


>gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 614 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 663

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108
              DY Q+       +L+     +           
Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 698


>gi|297722687|ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group]
 gi|255675038|dbj|BAH92435.1| Os03g0840400 [Oryza sativa Japonica Group]
          Length = 1632

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 14/169 (8%)

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              E  D      +G P   ++    +  +     S         Q + +      + +++
Sbjct: 1232 DQECNDPENQYHEGEPYDHVIEQEPERDARETGTSMKLRNRRKLQKDGIPEHTADDIMDE 1291

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                  S+E           R +++      +  +  + S        S D  +E S   
Sbjct: 1292 DFGEPPSDEQDNDSGDEYTARGKQKGRRKSREKNINKEPSRG--TKRTSGDSTIEESQKQ 1349

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 ++ A    +        V  PE            KK     RRK
Sbjct: 1350 KLQKNKSKASSGGQKKTSKDSSVEQPE------------KKLTHRIRRK 1386


>gi|237831139|ref|XP_002364867.1| hypothetical protein TGME49_055390 [Toxoplasma gondii ME49]
 gi|211962531|gb|EEA97726.1| hypothetical protein TGME49_055390 [Toxoplasma gondii ME49]
          Length = 2731

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 7/177 (3%)

Query: 554  IGIELADKLF--YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPI 606
                  +  F   +E+     +    T ++V   S+     +      +           
Sbjct: 1843 ADEGRRENHFCAAVERPPESARRERGTRYEVQRRSRESQARRVSVEPGESRNPLPCSTEN 1902

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +S S          EE T    +R++   RR+ A     A   S   S     + +   
Sbjct: 1903 GRSSSPRGPTLRSSGEERTHTDERRKKTLTRRQKALLEQKAARESGGESRAEREETACTD 1962

Query: 667  YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +    +  +  E       E+   S         E      D  +  TR  KRRK
Sbjct: 1963 SQKRGGRSADDSREKQRGDVEESEAASEDSEDETSEEDDLKDEDFQLGSTRRTKRRK 2019


>gi|326478881|gb|EGE02891.1| DNA ligase [Trichophyton equinum CBS 127.97]
          Length = 889

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 4/153 (2%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  +  S              +    +  K +          PI   +   +I       
Sbjct: 33  FSSKSSSSKNDEAKEKTDEAVEETPQTPRKQVGRAGSKRTPPPIDDGDVDGEILSGGEKS 92

Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           ES   + +R++R+     +    +D          S   N    S               
Sbjct: 93  ESISPVTRRQKRKEAVTTKGDEESDEQPVTKRRRKSPKSNTKTKSPINGGCSKAAAADEQ 152

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                    E    S    S  E+E  +    P
Sbjct: 153 SPANIKSDAEPELSSAEENSASEIEEDDIDDKP 185


>gi|189239270|ref|XP_001810058.1| PREDICTED: similar to transcriptional regulator ATRX (X-linked
           helicase II) [Tribolium castaneum]
          Length = 1848

 Score = 43.0 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 39/156 (25%), Gaps = 1/156 (0%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +E             K  S+S A   D+ I      E       +    +          
Sbjct: 689 LEIKRKNTKSKENPEKDSSESTASDLDEEINHSPVSEVEKNQDLAVGNSEEMAEDALNLL 748

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                    +       +++ D        + +   +         ++  N    +NG+ 
Sbjct: 749 NSDKDDSDDKEEAPEENSENSDKEKNGK-ETAEKASEKDPTNETNENEQDNTEKNDNGSE 807

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
              ++         + E   S+ +      K RW K
Sbjct: 808 KTNDDQSEKEANDKSDEGSKSDENKIEEKSKKRWRK 843


>gi|326931095|ref|XP_003211671.1| PREDICTED: putative sodium-coupled neutral amino acid transporter
           10-like [Meleagris gallopavo]
          Length = 1147

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 61/231 (26%), Gaps = 9/231 (3%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           ++++      + R  EE  +   A  +     +         K   + E E      I V
Sbjct: 424 VKTEEVGMEHLER--EEDRIDQDAVKLPEQNPAVEEAEDDRHKPKLLDEKEEMEQPQIKV 481

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       E+G P + +       G         ++   V  DE ++ + +    
Sbjct: 482 ----PMEVPETDEERGKPEEKVQLDRPDQGIALPMGEAHRHEPPVPHDEVVVDMGRERED 537

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                  +  +     +   R      P  +     V+++    +  +    ++   P  
Sbjct: 538 SVENKQALGGDEGNAPKAAPREPAELLPQKEAQGKEVIAENRGTEKPVK---NLKNAPEV 594

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +                    +       ++ +    +KT+    RK
Sbjct: 595 SVPKDGRPPYKEQEPGRAAPDAKARAAVLAGEKSAEAAGDGEKTKLQFPRK 645


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 35/146 (23%), Gaps = 1/146 (0%)

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                +        +      ++      P  E           ++     + +R R R 
Sbjct: 358 PRDEKNFEDVERLVQKEIPRLENLLQTDAPAPEEATAEAPAKADDKPKFADKPKRTRSRS 417

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDM-YMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           R+      D      V++ +   D+      +EP                 ++      P
Sbjct: 418 RKSDAPRADKAAAEQVTADKPAEDNQPQAPKVEPKAEPTSEPAPQAEVAPAQDAPAQDAP 477

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722
                  +   ++D   +      +R
Sbjct: 478 SQNDRRSNRGGNNDKTPRGRGRNDKR 503


>gi|313232819|emb|CBY09502.1| unnamed protein product [Oikopleura dioica]
          Length = 500

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 31/148 (20%), Gaps = 3/148 (2%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            + +         T       S         E     +      K    +   ++   ++
Sbjct: 124 AVSQIKSGGKAEKTEKSSSKSSNKTKEADKSERKGSRDESKQREKKS--DKRAESKPRDD 181

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE-NG 682
             G   +R +  RR R  +   +      +   +   D       E  D       +   
Sbjct: 182 KKGSKERRDKSERRDRDKSKKRETSEERRIRKEKERADRKEKERAERKDRKKGGEEKAER 241

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSD 710
           +   +                     +D
Sbjct: 242 SERRSSRPVRPTSAKGERRRPPPVPEND 269


>gi|331242123|ref|XP_003333708.1| hypothetical protein PGTG_15468 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312698|gb|EFP89289.1| hypothetical protein PGTG_15468 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 350

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 40/163 (24%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
              + ++GS  Q   +   K  + ++      +             PK            
Sbjct: 52  PHGHKKRGSDPQPSPDQPKKPETPNRRHKRSSDPPAADDASKKPDGPKPRHKRSSDPPAA 111

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            + +      + R++R   P                Q    D                 +
Sbjct: 112 DDANKKPDGPKPRQKRSSDPPAADDPNKKPDAPKPRQKRGSDPQADDPNKKPDAPKPRQK 171

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            G+    ++ +         +   S+  +D   KK    K R+
Sbjct: 172 RGSDPQADDPNKKPDAPKPRQKRGSDPQADDPNKKPDAPKPRQ 214



 Score = 40.7 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 2/156 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +   +     GSD        +      D+   P   +   +   D   +++++    
Sbjct: 37  SSETGSSKNDGAGSDPHGHKKRGSDPQPSPDQPKKPETPNRRHKRSSDPPAADDASKKPD 96

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
             + R +R        DA    D    +           +P+   +            + 
Sbjct: 97  GPKPRHKRSSDPPAADDANKKPDGPKPRQKRSSDPPAADDPNKKPDAPKPRQKRGSDPQA 156

Query: 690 YDVSIPPVSTPEMES--SNSSSDPIVKKTRWWKRRK 723
            D +  P +    +   S+  +D   KK    K R+
Sbjct: 157 DDPNKKPDAPKPRQKRGSDPQADDPNKKPDAPKPRQ 192


>gi|149177853|ref|ZP_01856452.1| hypothetical protein PM8797T_31980 [Planctomyces maris DSM 8797]
 gi|148843343|gb|EDL57707.1| hypothetical protein PM8797T_31980 [Planctomyces maris DSM 8797]
          Length = 1189

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 53/185 (28%), Gaps = 1/185 (0%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
            N K   +     +     +     +  ++    ++  P +             +     
Sbjct: 566 QNNKSEPMENKSEKADRKSSDQADPDKKEEGQPGDQTKPGEENQQEKGSQKPGKKNSPQS 625

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           ++ +    +E        +S E  + +    +    I++   + ++     +        
Sbjct: 626 ESTDPQKSEEPGAGQKPQKSGEKEELDSDGADDQEAIKRILEQLKKEGQQPEPGSEPKQE 685

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
             +  Q       D  M+    +  N  +N     T+       P + P+  SS +SSD 
Sbjct: 686 PDAEKQEPGKSENDPQMQDQKSSGANGEKNNPSSDTDKGSEG-EPQNAPDKNSSPTSSDK 744

Query: 712 IVKKT 716
             K  
Sbjct: 745 ADKPD 749


>gi|91087903|ref|XP_970676.1| PREDICTED: similar to AGAP011127-PA [Tribolium castaneum]
 gi|270011940|gb|EFA08388.1| hypothetical protein TcasGA2_TC006035 [Tribolium castaneum]
          Length = 962

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 47/184 (25%), Gaps = 7/184 (3%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R       ++      +      +L+L  ++R    ++E          +    A   F 
Sbjct: 70  RPHRSERRRHDDKKKHMTEAEKSILHLRKRERMQREKWEKYRKEQ---NLDPAAAVDDFA 126

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I     ++  + +  K          D++     +       PK      I      ++ 
Sbjct: 127 I----NIEKAIASVLKKDKHVSDEEKDEDKRGRKRKNRDKERPKGGKQRKIDSPKAEDDE 182

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               +   +R R   P ++       SD S  ++                  N  +    
Sbjct: 183 NASPKSDEKRDRSASPRSEDSYDSDESDRSRKKDYKKGKGRSRARKRSRERRNEQQTQPS 242

Query: 685 GFTE 688
              +
Sbjct: 243 KDAQ 246


>gi|110631437|gb|ABG81064.1| immunoglobulin A1 protease precursor [Haemophilus influenzae]
          Length = 1750

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 40/168 (23%), Gaps = 15/168 (8%)

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
             V     L  +   +      + +        S + +            ++ +       
Sbjct: 1239 TVQPQTALESEN--VPTVKNAEEVQAQLQTQTSATVSTEQPAKETSSNVEQPVTESTTVN 1296

Query: 611  S-----LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
            +              +  S     K RRRR   +P     D    +D S        S  
Sbjct: 1297 TGNSVVENPENTTQPAVNSESSEPKSRRRRSISQPQETSTDETTAADNSESSETKRRSRR 1356

Query: 666  MYMEPSDI--------TNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
               +P +         +            +E    S   VS P+  S+
Sbjct: 1357 SVSQPQETSAEETTVTSTDETTVADNSKSSETKRRSRRSVSQPQETSA 1404



 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 1/144 (0%)

Query: 565  IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            +E+       VNTG+ V  + +  +         + ++      S+  E   D   + ++
Sbjct: 1285 VEQPVTESTTVNTGNSVVENPENTTQPAVNSESSEPKSRRRRSISQPQETSTDETTAADN 1344

Query: 625  TGVIRKRRRRRRR-RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
            +     +RR RR   +P     +   V+         +         S  +     E  A
Sbjct: 1345 SESSETKRRSRRSVSQPQETSAEETTVTSTDETTVADNSKSSETKRRSRRSVSQPQETSA 1404

Query: 684  HGFTENYDVSIPPVSTPEMESSNS 707
               T             E   +N+
Sbjct: 1405 EETTVTSTNETTVADNSENNKTNT 1428


>gi|123492947|ref|XP_001326174.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121909085|gb|EAY13951.1| hypothetical protein TVAG_490890 [Trichomonas vaginalis G3]
          Length = 1042

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 9/220 (4%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI----ELAD 560
              E    +   + +   +       +           E      I           +  
Sbjct: 288 HKTETEPSKEQINEVTEISDVKQQENVEISNSNQ-NHIETEQKSEITTEPEPIKEDNIIT 346

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
               IE  +  +++     K  +       ++ +E V + +       S S +D ++   
Sbjct: 347 SQENIEISNETKSIEEEQKKETA--TEHVKEETVESVQETDEKQQENSSSSQKDNENEQK 404

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            E S     ++       +  T+       +    ++  I+D  +   E S+ T + L  
Sbjct: 405 LENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEIND--EEQKEISNSTQNELEP 462

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                  +        V     + + S +    + T   +
Sbjct: 463 ENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQ 502


>gi|21355513|ref|NP_651272.1| CG13625 [Drosophila melanogaster]
 gi|7301183|gb|AAF56315.1| CG13625 [Drosophila melanogaster]
 gi|15010486|gb|AAK77291.1| GH07383p [Drosophila melanogaster]
 gi|220945000|gb|ACL85043.1| CG13625-PA [synthetic construct]
 gi|220954826|gb|ACL89956.1| CG13625-PA [synthetic construct]
          Length = 647

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 35/153 (22%), Gaps = 1/153 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       +  SD   P   K  +            +S   +   ++        
Sbjct: 267 RRRRDKDSTPPRRRKDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRDNDQSPVRRRR 326

Query: 627 VIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +   RRRR    T                  +D S        D +     +     
Sbjct: 327 DSDQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDVDQSPPRRKRDFDQSPTRKRDKSPRR 386

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
             ++         + E      +     +K+RW
Sbjct: 387 RHDSDQSPARNHRSRERSPPPRNRFKEERKSRW 419



 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 46/218 (21%), Gaps = 3/218 (1%)

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR--FGVSINVVIGIELADKLFYI 565
               ++         +     + +  +      E   R    V +              I
Sbjct: 88  RNIAVKDEIKEEHEESSPATGIRIKQEPLDEEQEMWGRKATVVKVKDEFSPSRRSSPVRI 147

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++     +   +  +    ++     +            P  +    +         +S 
Sbjct: 148 KQEKRSSSRDLSPARSSKPAKREESPQRGRRRAGSSDQSPTRRGRDGDQSPPRQKHRDSD 207

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                R+ R   + P     D+                     + S         + +  
Sbjct: 208 -QSPPRKARNGNQSPVRKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPP 266

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  S PP    + + S         ++   + RK
Sbjct: 267 RRRRDKDSTPPRRRKDSDQSPPRRRKADDQSPVRRERK 304



 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 17/173 (9%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +      +        S  +  +   +     +D    P  +  S  D        +   
Sbjct: 215 RNGNQSPVRKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPPRRRRDKDS 274

Query: 627 VIRKRRR-------RRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
              +RR+       RRR+       RR   D   +       + Q+ +    D    P  
Sbjct: 275 TPPRRRKDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRDNDQSPVRRRRDSDQSPPR 334

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVS---TPEMESSNSSSDPIVKKTRWWKRR 722
               +           +      P     +P     +    P  K+ +  +RR
Sbjct: 335 RRRDDKQTPPRRRRNSDQSPPRRPKDVDQSPPRRKRDFDQSPTRKRDKSPRRR 387


>gi|308499266|ref|XP_003111819.1| CRE-THOC-2 protein [Caenorhabditis remanei]
 gi|308239728|gb|EFO83680.1| CRE-THOC-2 protein [Caenorhabditis remanei]
          Length = 1477

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 32/149 (21%), Gaps = 16/149 (10%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                 +     + +  +              +  E    D+  +    SE  E       
Sbjct: 1278 PKKESDSTEDGERITPSPPPAKKTRIGDRLKRPEEEKKDDKEPIKDTDSEKGES------ 1331

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                      +++R + R                  +           +   I      +
Sbjct: 1332 ----------KKKREKSRERKDKDPSGKEKRSEKEKEKKQHKENGESQKDQKILKDQRQK 1381

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSS 709
            + +    E    ++P     + E  +S  
Sbjct: 1382 SKSEERKEVAGPTLPEAPPKKDEKKSSRK 1410



 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 36/152 (23%), Gaps = 6/152 (3%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            K S  +          +D +       +E      +     K E  ++   +   E+ T 
Sbjct: 1196 KVSTAEKPKKKETTEKTDGEPADKKLKVEGKKNGTSAEKATKEEVQQNGGASGTVEKKTT 1255

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID------DSFDMYMEPSDITNHNLLE 680
                + R++R  + +          +  S ++          +    +           +
Sbjct: 1256 SDENKERKKRPGKTSAPSAPKEPKKESDSTEDGERITPSPPPAKKTRIGDRLKRPEEEKK 1315

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +      +            E        DP 
Sbjct: 1316 DDKEPIKDTDSEKGESKKKREKSRERKDKDPS 1347


>gi|147899027|ref|NP_001089658.1| sister chromatid cohesion protein PDS5 homolog B-A [Xenopus laevis]
 gi|123908012|sp|Q498H0|PD5BA_XENLA RecName: Full=Sister chromatid cohesion protein PDS5 homolog B-A;
            AltName: Full=Androgen-induced proliferation inhibitor A
 gi|71682207|gb|AAI00221.1| MGC114980 protein [Xenopus laevis]
          Length = 1448

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 52/226 (23%), Gaps = 7/226 (3%)

Query: 505  RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEA--RFGVSINVVIGIELADK 561
            R     L Q    +  + +               +  E E   R      +     L+  
Sbjct: 1173 RLDSMELDQSENEDYTMSSPLSGKKSDKRDDSDLLKSELEKPRRGKKQSLIDQDDSLSMD 1232

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                    P       G K  + +         E   +++ L    +  S          
Sbjct: 1233 ELSKPAQEPKSRTGQRGRKRAAAASDSEEQTWQEKRLKEDLLENEDEQNSPPKKGRRGRP 1292

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             +S  +   +                 V S  +   + ++ S +   E  D        +
Sbjct: 1293 PKSAKMAISKEEPTVTTPKRGRKKAVPVESPPTDEDDHLEISEEQDFENIDQKRKGRGSS 1352

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV----KKTRWWKRRK 723
                   +   S+   S P  +              KK+   + RK
Sbjct: 1353 RRTPQKSDSTDSLLDTSRPTPQKRRGRPPKTPTVQQKKSHVGRPRK 1398


>gi|307204648|gb|EFN83270.1| Myosin light chain kinase, smooth muscle [Harpegnathos saltator]
          Length = 9315

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/180 (6%), Positives = 46/180 (25%), Gaps = 5/180 (2%)

Query: 549  SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
             I      +       I++    +       +   +   P+  +  + +  ++  +   +
Sbjct: 6187 KIKKESSKKDEAAQMEIKREEQEKKDETEKSRKEDEKLKPTAIEEAKVIPDEQIKVTDTQ 6246

Query: 609  SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
                  +Q     E             +R+       +    +    + + + ++     
Sbjct: 6247 ENKKAPMQRRSKRESKKAEKADEEPIEKRKEEIRKMDEKTAQTQSVHVNDAMKENEASKD 6306

Query: 669  EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS-----DPIVKKTRWWKRRK 723
            +     ++   E                    E++   + S     +  + +T   + R+
Sbjct: 6307 DRQYRKSNEDWERDERLRMRQKQEEKFSGKISELQERENKSLYLKINKEINETGKEEERR 6366


>gi|326917060|ref|XP_003204822.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Meleagris
           gallopavo]
          Length = 1046

 Score = 43.0 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 38/157 (24%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++    ++ +        + ++ S  ++              KS  + + +      +S 
Sbjct: 274 DQTRKSRSPMLKRRSQEKNRKSKSPPEDRNKADDKSKSRDRRKSPVVNESKSRDRGRKSK 333

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                R + + RR  + D       +D                + +              
Sbjct: 334 SPAELRSKSKDRRSRSKDRKSRRSETDKDKKPIKSPSKDASSGKENRSPRRPGRSPKGRS 393

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +           +P      S       +TR   RR
Sbjct: 394 LSPKPREKSRRSRSPLFNDRRSKQSKSPSRTRSPARR 430


>gi|156390409|ref|XP_001635263.1| predicted protein [Nematostella vectensis]
 gi|156222355|gb|EDO43200.1| predicted protein [Nematostella vectensis]
          Length = 999

 Score = 43.0 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 65/222 (29%), Gaps = 8/222 (3%)

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA-RFGVSINVVIGIELADKLFYIEK 567
           +      A       + D        +     + E   FG   N      L+ +    + 
Sbjct: 428 KENQDNKAQAKKNTNNPDKDALRETDEIKPRNDLEKGLFGDQANTARESYLSLEEKKTQN 487

Query: 568 GSPVQALV-----NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
               +            K   D    +  +  E +  D+A      +E          + 
Sbjct: 488 TEENKEPKVQLVTPKEMKRYLDKARDTIARIRESMGDDKAGKDDCNAEDKISENHKQQTN 547

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +      + RR    +  + +  D    +   + ++      D  ++PS      + ++ 
Sbjct: 548 DENDKESRARRGTEGKSASDNEKDLSRSAKSKNTKSKSKKKEDDAVKPSSSPKSPVNKSS 607

Query: 683 AHGFTENYDVSIPPVSTPE--MESSNSSSDPIVKKTRWWKRR 722
           A+  +   ++ +      +   +  NS+    +KK++   +R
Sbjct: 608 ANKGSTESNLVMKNTDDEKEVRKQVNSTPSQEIKKSQASDKR 649


>gi|326469593|gb|EGD93602.1| DNA ligase [Trichophyton tonsurans CBS 112818]
          Length = 859

 Score = 43.0 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 4/153 (2%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  +  S              +    +  K +          PI   +   +I       
Sbjct: 33  FSSKSSSSKNDEAKEKTDEAVEETPQTPRKQVGRAGSKRTPPPIDDGDVDGEILSGGEKS 92

Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           ES   + +R++R+     +    +D          S   N    S               
Sbjct: 93  ESISPVTRRQKRKEAVTTKGDEESDEQPVTKRRRKSPKSNTKTKSPINGGCSKAAAADEQ 152

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                    E    S    S  E+E  +    P
Sbjct: 153 SPANIKSDAEPELSSAEENSASEIEEDDIDDKP 185


>gi|297488544|ref|XP_002697009.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain
            containing 1 [Bos taurus]
 gi|296474997|gb|DAA17112.1| membrane associated guanylate kinase, WW and PDZ domain containing 1
            [Bos taurus]
          Length = 1452

 Score = 42.7 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 41/205 (20%), Gaps = 18/205 (8%)

Query: 471  RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
            R      E + +   +    G  R   S A        E         ++ +        
Sbjct: 1255 RDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAPEGRRDAQPERMVTNGPKRRSP- 1313

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
               +KR                     L  +    ++                   +P  
Sbjct: 1314 ---EKRREGTR-----------SADNTLERREKQEKRKEVSPERRRERSPTRRRDGSPGR 1359

Query: 591  DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
             +       D+   P  K  S  + +        T    +   RR R     +  D G  
Sbjct: 1360 RRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPER---RRERSLEKRNKEDRGSH 1416

Query: 651  SDVSSIQNVIDDSFDMYMEPSDITN 675
             +        D        P     
Sbjct: 1417 RERDETSLRQDTGRSSRHPPEQRRR 1441



 Score = 41.9 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 32/144 (22%), Gaps = 1/144 (0%)

Query: 559  ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQD 617
            A     +  G   ++         S        +  E   +        +S +   D   
Sbjct: 1298 AQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRRRDGSP 1357

Query: 618  NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                     ++ +RR   R+R  + +          +       +         D  +H 
Sbjct: 1358 GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRRERSLEKRNKEDRGSHR 1417

Query: 678  LLENGAHGFTENYDVSIPPVSTPE 701
              +  +           PP     
Sbjct: 1418 ERDETSLRQDTGRSSRHPPEQRRR 1441



 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 40/170 (23%), Gaps = 7/170 (4%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              +  +            +A V         S+ P+         +          +   
Sbjct: 1239 PDLHKSSPH------GEKRAHVRDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAP 1292

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
            + + +   E       KRR   +RR       +     +    +  +         P+  
Sbjct: 1293 EGRRDAQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRR 1352

Query: 674  TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             + +             D    P           +     ++T+  +RR+
Sbjct: 1353 RDGSP-GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRR 1401


>gi|255940392|ref|XP_002560965.1| Pc16g06290 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585588|emb|CAP93299.1| Pc16g06290 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 814

 Score = 42.7 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 5/153 (3%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK--RRR 633
            T  K  S+S+ P      + V +         +ES    +  +V E           + 
Sbjct: 17  PTPSKTPSESEKPDSKPEEQTVAETTTSEAPAPTESEPIQKPEVVEENKDDDFTTVTSKH 76

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHGFTENY 690
             + +   +      V +   S ++  DDS                E     A G  E  
Sbjct: 77  AAKTKAINSRTSSPSVRTGSKSRKSKEDDSNTSNGNADATEKQAPSEGQTEKAEGAAEKS 136

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                             + P+     W +RR+
Sbjct: 137 TEKPEDSEKTASPPKELKAAPLPSVNIWQQRRE 169


>gi|195121632|ref|XP_002005324.1| GI20420 [Drosophila mojavensis]
 gi|193910392|gb|EDW09259.1| GI20420 [Drosophila mojavensis]
          Length = 4529

 Score = 42.7 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 2/151 (1%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            EK S  +   +   +           K ++    +E  L   + +  E   +  V +   
Sbjct: 3009 EKVSEEKVPESKKPETKESEAESQKAKVLDKESAEEQTLDAKQKDQAEKEAEANVQKGEV 3068

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +   +    +   +         ++    + +  +S +   +  D    +  +  A  
Sbjct: 3069 SEVIAEKASEEKVPESKKPETKETEAESQKAKVLEKESAEE--QKLDAKKKDQSQKEAEA 3126

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              +  +VS         E    S  P  K+T
Sbjct: 3127 KAQKGEVSEVMTEKASEEKVPESKKPETKET 3157



 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 5/217 (2%)

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL---AD 560
             +  EE + +                 +L+++ A     +A+            +     
Sbjct: 3009 EKVSEEKVPESKKPETKESEAESQKAKVLDKESAEEQTLDAKQKDQAEKEAEANVQKGEV 3068

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                 EK S  +   +   +           K +E    +E  L   K +  +   +   
Sbjct: 3069 SEVIAEKASEEKVPESKKPETKETEAESQKAKVLEKESAEEQKLDAKKKDQSQKEAEAKA 3128

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             +     +   +    +   +         ++    + +  +S +   +  D    +  E
Sbjct: 3129 QKGEVSEVMTEKASEEKVPESKKPETKETEAESQKAKVLEKESAEE--QKLDAKQKDQAE 3186

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              A    +  +VS         E    S  P VK++ 
Sbjct: 3187 KEAEAKAQKGEVSEVIAEKASEEKVPESKKPGVKESG 3223



 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 9/216 (4%)

Query: 510  YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-LFYIEKG 568
             ++      +      +        K+A ++E E+     ++     +   +     +KG
Sbjct: 2877 EVIAEKVSEVPESKKPETKESEAESKKAKVLEKESAEEQKLDAKQKDQAEKEAEAKAQKG 2936

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               + +     +           K  E   Q   +L    +E  +         +     
Sbjct: 2937 EVSEVIAEKVSEESVPESMKPVVKESEAESQKAKVLEKESAEEQKLDAKPEKPAQKEAEA 2996

Query: 629  RKRR-------RRRRRRRPATDHHDAGVVSDVSSIQN-VIDDSFDMYMEPSDITNHNLLE 680
            + ++         +       +          +  Q   + D      +  D    +  E
Sbjct: 2997 KAQKGEVSEVIAEKVSEEKVPESKKPETKESEAESQKAKVLDKESAEEQTLDAKQKDQAE 3056

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              A    +  +VS         E    S  P  K+T
Sbjct: 3057 KEAEANVQKGEVSEVIAEKASEEKVPESKKPETKET 3092



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/222 (8%), Positives = 52/222 (23%), Gaps = 7/222 (3%)

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
               +     ++      +       V        +A ++E E+     ++     +   +
Sbjct: 2548 KAQKEEVFEVIAEKVSEVPESKKPAVKESEAESLKAKVLEKESAEEQKLDAKPEEKAQKE 2607

Query: 562  -LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                 +KG   + +     +           K  E   Q   +L    +E  +       
Sbjct: 2608 AEKKAQKGEVSEVIAEKVSEEKVPESKKPETKESEAESQKAKVLEKESAEEQKLDAKQKD 2667

Query: 621  SEESTGVIRKRRRR------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              E     + ++         +    +       VV +  +             E   + 
Sbjct: 2668 QAEKEAEAKAQKGEVSEVIAEKVSEESVPESMKPVVKESGAESQKAKVLEKESAEEQKLD 2727

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                 +             +  V   ++     S  P  K++
Sbjct: 2728 AKPEKQAQKEAEANAQTGEVSEVIAEKVSEVPESKKPETKES 2769



 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 66/252 (26%), Gaps = 15/252 (5%)

Query: 474  SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533
               L++  K     +    ++      +   ++ EE + +                 +L 
Sbjct: 3044 EQTLDAKQKDQAEKEAEANVQKGEVSEVIAEKASEEKVPESKKPETKETEAESQKAKVLE 3103

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            ++ A   + +A+              +     +KG   + +     +           K 
Sbjct: 3104 KESAEEQKLDAK-------KKDQSQKEAEAKAQKGEVSEVMTEKASEEKVPESKKPETKE 3156

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-------RRRRRRRPATDHHD 646
             E   Q   +L    +E  +         E     + ++         +       +   
Sbjct: 3157 TEAESQKAKVLEKESAEEQKLDAKQKDQAEKEAEAKAQKGEVSEVIAEKASEEKVPESKK 3216

Query: 647  AGVVSDVSSIQN-VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
             GV    +  Q   + +      +  D    +  E  A    +  +VS         E  
Sbjct: 3217 PGVKESGAESQKAKVLEKESAEEQKLDAKQKDKAEKEAKAKAQKGEVSEVIAEKASEEKV 3276

Query: 706  NSSSDPIVKKTR 717
              S  P VK++ 
Sbjct: 3277 PESKKPGVKESG 3288



 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/146 (6%), Positives = 33/146 (22%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             + +         +++    +     V + E+          +D  +     ++      
Sbjct: 2752 AEKVSEVPESKKPETKESEAESKKAKVLEKESAEEQKLDAKQKDQAEKEAEAKAQKGEVS 2811

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
                 +    +       VV +  +             E   +              +  
Sbjct: 2812 EVIAEKVSEESVPESMKPVVKESEAESQKAKVLEKESAEEQKLDAKPEKPAQKEAEAKAQ 2871

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKT 716
               +  V   ++     S  P  K++
Sbjct: 2872 KGEVSEVIAEKVSEVPESKKPETKES 2897


>gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894]
          Length = 690

 Score = 42.7 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 593 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 642

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108
              DY Q+       +L+     +           
Sbjct: 643 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 677


>gi|115534313|ref|YP_783842.1| putative spread protein [Streptomyces laurentii]
 gi|23978905|dbj|BAC21268.1| putative spread protein [Streptomyces laurentii]
          Length = 408

 Score = 42.7 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 36/154 (23%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +A      ++  +       ++ E   + +A L   +     +         +    
Sbjct: 170 EDARAAEREQQRLADERAREQERQDREHAREQQAALERERLAHDAEQARAEREHAAQVER 229

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R    R+RR   D  D       +  +              +          A     
Sbjct: 230 ERREDAARQRREEQDRADKARADAEAKAEREQKAKEATQRAERERKAAEARRARAPVSAA 289

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                    +T    + +++  P         RR
Sbjct: 290 VSTPRPTVSTTVSTPAHDTTKTPSETPKAAEARR 323


>gi|26006103|dbj|BAC41395.1| mKIAA0155 protein [Mus musculus]
          Length = 386

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 30/140 (21%), Gaps = 2/140 (1%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL--EDIQDNIVSEESTGVI 628
            +          SDS              D                      S+E +   
Sbjct: 240 AEKKKAHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDSDSD 299

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +  R+RRR     +D+         S      +DS                 +       
Sbjct: 300 QPSRKRRRSGSEQSDNESVQSGRSPSGASENENDSRPASPSAESDHESEQGSDNEGSGQG 359

Query: 689 NYDVSIPPVSTPEMESSNSS 708
           + + S P  S  E     S 
Sbjct: 360 SGNESEPEGSNNEASDRGSE 379


>gi|317030118|ref|XP_001391949.2| hypothetical protein ANI_1_2072064 [Aspergillus niger CBS 513.88]
          Length = 964

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 36/154 (23%), Gaps = 1/154 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                   +        + P  +   +    +E +    +    E         E     
Sbjct: 564 EARTEPKPSRPVRRGRGRKPLPENTDDAQASNEEIPAQAEQTEPETEVQPAQQTEPPKPA 623

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           ++ R R   R+   D   A      +  + V  +      E          E      T+
Sbjct: 624 KRGRGRPLSRKE-NDVTQAPDEEPTAQAEAVEPEPVPEPEEEPQPEPPAEPEPEKDDTTQ 682

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      P   +  +   P  KK +  + R
Sbjct: 683 AAVEEATAQDEPAEPAEPTEEAPPPKKRKPRQPR 716


>gi|194677285|ref|XP_001789410.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain
            containing 1 isoform 1 [Bos taurus]
          Length = 1454

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 41/205 (20%), Gaps = 18/205 (8%)

Query: 471  RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
            R      E + +   +    G  R   S A        E         ++ +        
Sbjct: 1257 RDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAPEGRRDAQPERMVTNGPKRRSP- 1315

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
               +KR                     L  +    ++                   +P  
Sbjct: 1316 ---EKRREGTR-----------SADNTLERREKQEKRKEVSPERRRERSPTRRRDGSPGR 1361

Query: 591  DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
             +       D+   P  K  S  + +        T    +   RR R     +  D G  
Sbjct: 1362 RRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPER---RRERSLEKRNKEDRGSH 1418

Query: 651  SDVSSIQNVIDDSFDMYMEPSDITN 675
             +        D        P     
Sbjct: 1419 RERDETSLRQDTGRSSRHPPEQRRR 1443



 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 32/144 (22%), Gaps = 1/144 (0%)

Query: 559  ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQD 617
            A     +  G   ++         S        +  E   +        +S +   D   
Sbjct: 1300 AQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRRRDGSP 1359

Query: 618  NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                     ++ +RR   R+R  + +          +       +         D  +H 
Sbjct: 1360 GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRRERSLEKRNKEDRGSHR 1419

Query: 678  LLENGAHGFTENYDVSIPPVSTPE 701
              +  +           PP     
Sbjct: 1420 ERDETSLRQDTGRSSRHPPEQRRR 1443



 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 40/170 (23%), Gaps = 7/170 (4%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              +  +            +A V         S+ P+         +          +   
Sbjct: 1241 PDLHKSSPH------GEKRAHVRDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAP 1294

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
            + + +   E       KRR   +RR       +     +    +  +         P+  
Sbjct: 1295 EGRRDAQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRR 1354

Query: 674  TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             + +             D    P           +     ++T+  +RR+
Sbjct: 1355 RDGSP-GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRR 1403


>gi|71981657|ref|NP_496311.2| BLIstered cuticle family member (bli-1) [Caenorhabditis elegans]
 gi|115502367|sp|Q09457|BLI1_CAEEL RecName: Full=Cuticle collagen bli-1; AltName: Full=Blistered
           cuticle protein 1; Flags: Precursor
 gi|37619788|emb|CAA86755.2| C. elegans protein C09G5.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 948

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 39/192 (20%), Gaps = 32/192 (16%)

Query: 562 LFYIEKGSP--------------------VQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            + +E+                               +        P Y+ +        
Sbjct: 678 NYEVERSREYVPEAPRPRQGYEHSSGYGGDDRKEQPKYMESRPVDEPRYETDAPSRS--R 735

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV----------S 651
            L  +      E   D           R+   RR        + +               
Sbjct: 736 PLKKVEIIRHPERGYDRRQPSYEDSKPRQEEPRRYETEAEPRYEEVPRKETHPPGFGRPK 795

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
              + +       +  M P   T     +       E  D+S P          +     
Sbjct: 796 SEENPRETGRTYSEEAMPPVQQTEKYNGDKRKKNQPEYEDISKPEEDKERAMEKHHKKPN 855

Query: 712 IVKKTRWWKRRK 723
             ++ +W + RK
Sbjct: 856 KFQEKQWEEHRK 867


>gi|195401465|ref|XP_002059333.1| GJ18392 [Drosophila virilis]
 gi|194142339|gb|EDW58745.1| GJ18392 [Drosophila virilis]
          Length = 5496

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 57/621 (9%), Positives = 159/621 (25%), Gaps = 47/621 (7%)

Query: 57   AFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD--VTHGDVTI 114
            AFV+ G    GF     + PD           L+++            +   +  G    
Sbjct: 4559 AFVEIGSK--GF----CVPPD-----------LMQDEEGQSKQDSKNGEGFGLEDGTGEN 4601

Query: 115  PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174
                 +E    + +  +  + +             + ++     D   +   +   +E  
Sbjct: 4602 DASDKIESEDQLDDAKRPEDRKDEGDKEEPDCKEEKGIEMSDDFDAKMQDVEKPENEEDD 4661

Query: 175  KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP--------NTSKGETISRKITNP 226
                    ++ KE    +  A      + G               N       S+   + 
Sbjct: 4662 SGESENEDELNKEMGETEQGAEKLDDQIWGDDQEKQHEEEEQPDLNEEDQGKGSKDEKDE 4721

Query: 227  V-----DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM-RLWDNVRELAL 280
                    +  KE  +      G+      +G  + K + +   +     L +       
Sbjct: 4722 HNDLDTKNEAAKEDGKDEHEKDGLDATNEPSGEDKRKEQARDIDDMKEPELDEEQTNAMH 4781

Query: 281  NSVAPHLVYEEGNL-IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339
            N +      EE +L     + +    +  E            K+ M+          ++ 
Sbjct: 4782 NELEEPPEPEEMDLGDMNNVDEGQDNEADEANDENPFDIDAMKENMQAADEPEEEQAKEE 4841

Query: 340  EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399
            +           E   +     +         +  + +    ++  +     +   +   
Sbjct: 4842 QPMSHDSDSDAEEESTEQEQTHKAPGEEYQDAVAEEEKENTELETQTRGDLDKEEEQPEE 4901

Query: 400  LQTNLEAAEEIA-RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
                 EA EE   +  + +D +     D +         S   +L++  ++D+    +  
Sbjct: 4902 TPAEPEAREEKPEQHTQSKDKSS--TEDNVQSVPDTEQNSSADQLQQE-QQDK---NIKQ 4955

Query: 459  ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
                   E   ++      E+ T    +   A    + S       +  +E   Q   + 
Sbjct: 4956 DQKMDEQETGEEKDGVGQAENDTNDGGHQGIAETKETVSHEERKNEKQTQEKRKQGRTNE 5015

Query: 519  IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY-IEKGSPVQAL--- 574
                  ++       +    + E   +            +  + +  +++          
Sbjct: 5016 ERTLGEAEQNKLKQLKTINQMKE-SKQNEGEKQDQPDEHVEAEEYQHVKEPKNSDKTTLD 5074

Query: 575  -VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                        Q     K  E     + L+   ++ +  + +D  + + S+    +   
Sbjct: 5075 NATEEQSKQIKHQEDEEPKVDEDAENADELMADEETTTAPEEEDAQLEQLSSERTDQNSD 5134

Query: 634  RRRRRRPATDHHDAGVVSDVS 654
            +  +   A +  +     ++ 
Sbjct: 5135 KPSKTEQAKERLETAEQMEIE 5155


>gi|114645177|ref|XP_001164921.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 2 [Pan troglodytes]
          Length = 1390

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900

Query: 720 KRRK 723
            R +
Sbjct: 901 SRER 904


>gi|325116896|emb|CBZ52449.1| NLI interacting factor-like phosphatase domain-containing protein
           [Neospora caninum Liverpool]
          Length = 2217

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 38/145 (26%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +   + G     + +   ++   +    +++       +  ++  ++   EE     
Sbjct: 572 REDEDSEHEGEADQREHEDSEHEGEADQREDEDSEHEGEADQREDEDSEHGSPEEKRVEP 631

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K+RR  RRR    +           +         D                     +E
Sbjct: 632 GKKRRGGRRRTGRKESEGRRGGKGDRAKGEKRAKGEDEASRARPTEAERPDATHQGEISE 691

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV 713
                  P+S  +  S + S+    
Sbjct: 692 GLQEGQCPLSEHQCPSPSDSALESP 716


>gi|195378064|ref|XP_002047807.1| GJ13644 [Drosophila virilis]
 gi|194154965|gb|EDW70149.1| GJ13644 [Drosophila virilis]
          Length = 1024

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 14/164 (8%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +       ++          K    V  D  + P P+ ++ +D +   +        R +
Sbjct: 472 EVSKKPPEEITPLEIKLLRAKPNNKVKLDPPVKPTPEPQTPKDDKPKPLPITPKTEPRSK 531

Query: 632 R-----------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
           R           R  R  +  T   DA   S    +        D  + P    N +  +
Sbjct: 532 RTDANISTGVQLRETRGMQRMTRSADARPYSKY--MGLRRTLDNDKKVTPKRKRNSDTNQ 589

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSS-DPIVKKTRWWKRRK 723
                  +  +V      T E   +  +  +P  KK     +RK
Sbjct: 590 TPTTSKLKKVEVKQEVTVTAEKSKTTPTKGNPKTKKIGRAPKRK 633


>gi|156538557|ref|XP_001607418.1| PREDICTED: similar to RH35990p [Nasonia vitripennis]
          Length = 606

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 35/158 (22%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E      A         +                 E    IP     E   +N     S 
Sbjct: 3   ENKEESPAKKPETTVATTADNPAETPAENPEKVPAETAAEIPAKAPAETPAENPAKALSE 62

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                  +        T        S+ +  +   +       E    T+       +  
Sbjct: 63  TPTESPVKAPAETPAKTSEETPAKTSEETPAKTSEETPAKTSEETPAKTSEETPAKTSEE 122

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                    P  ++ E  +   +  P V KT+   R+K
Sbjct: 123 TPAKTSEETPAKTSEETPAKTPAEAPAVLKTKQDFRKK 160


>gi|260825351|ref|XP_002607630.1| hypothetical protein BRAFLDRAFT_84681 [Branchiostoma floridae]
 gi|229292978|gb|EEN63640.1| hypothetical protein BRAFLDRAFT_84681 [Branchiostoma floridae]
          Length = 1012

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/178 (7%), Positives = 46/178 (25%), Gaps = 23/178 (12%)

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596
             + + E              + ++ + I+                S+            
Sbjct: 210 RWLTDLEEF---------NEWMNEEDYEID-----------ESMSHSEEPERRERGKPGP 249

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
             +  +  P P  +  +        +      ++   +    +   +      V +V+  
Sbjct: 250 KKRKRSPSPDPTKKKKKGRTPGPTPDRKKRSSKEDPDQEDSTKDMDNPSPVPNVEEVNLP 309

Query: 657 QNVIDDSFDMYMEPSD---ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
           +NV++   D   +P     + + +  E+      E+           + +  N +   
Sbjct: 310 KNVVNTKKDSEQQPIKGGTLADLDEKEDEEGKSEEDKTKKEGEGPKDDSQEDNVTEQT 367


>gi|220905031|ref|YP_002480343.1| NLP/P60 protein [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219869330|gb|ACL49665.1| NLP/P60 protein [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 325

 Score = 42.7 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 42/176 (23%), Gaps = 2/176 (1%)

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            R  V IN +             +      + L        SD       + +    +  
Sbjct: 149 KRTKVRINSLDDPYFKTTFLSARRVKVEGGETLTAQAESRLSDFTEEKVIRELARDKKKP 208

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
           A      +   +         ++T  +    R+      A +  ++      +       
Sbjct: 209 AKSRAAATRDNKRTNTREKKRDATIQVASNDRKGAAPARAAEARNSKNAKQAAQTAKAPA 268

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +       S        +   +  TE    +    S  + +S N  +    K  R
Sbjct: 269 KTAGKAQSKSQNKAGATAKKPDNKKTEAKKPAPAKTSAAKSDSGNKKNQGKDKNNR 324


>gi|302380964|ref|ZP_07269425.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna
            ACS-171-V-Col3]
 gi|302311185|gb|EFK93205.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna
            ACS-171-V-Col3]
          Length = 1889

 Score = 42.7 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 41/178 (23%), Gaps = 5/178 (2%)

Query: 543  EARFGVS---INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E + G     I V    E++ +   IE+       + T +        P           
Sbjct: 1587 EGKLGKKETTITVENSKEVSREEKIIEQPVKKIVKIGTKNVCEIPPVKPEDPTKPGNKDP 1646

Query: 600  DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            +    P  K         +   E  T    K        +P     +          +N 
Sbjct: 1647 ENPTKPGDKDPENPTKPGDKDPENPTKPGEKDP--ENPTKPGEKDPENPTKPGEKDPENP 1704

Query: 660  IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +  +    P +   +     G +   E       P        +  +      + +
Sbjct: 1705 GSEKPNEPGTPGENKPNEPGTPGENKPNEPGTPGEKPNEPGTPGENKPNEPGTPGENK 1762


>gi|194902401|ref|XP_001980690.1| GG17485 [Drosophila erecta]
 gi|190652393|gb|EDV49648.1| GG17485 [Drosophila erecta]
          Length = 3103

 Score = 42.7 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/208 (8%), Positives = 44/208 (21%), Gaps = 2/208 (0%)

Query: 511  LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
              +  +            L    +        E +  V  +     +         K + 
Sbjct: 1046 SKENKSDEKEAEQPRLKKLPSTAELEDRFNALERKLSVQKSSPSKNKKEPPDEGESKSTK 1105

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                          S         +     +   P  K  +    ++     ++     +
Sbjct: 1106 EPEKPEEPETEMEKSSDCQSPIAAKDPKNSDQKKPETKETTQSPTENKDQKVKAKSPKSE 1165

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL--LENGAHGFTE 688
             R  +   +   D  +      V +   +  +  D  ++            E        
Sbjct: 1166 ERIGKETSKSKEDSQETDSTKKVETNPKLSSEKGDHALKEKREEAPGKTDKETAETKNEN 1225

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              D      +   +  + S S P  K+ 
Sbjct: 1226 KSDSQKKEATKTSVPQTESDSKPASKEK 1253


>gi|195337671|ref|XP_002035452.1| GM14709 [Drosophila sechellia]
 gi|194128545|gb|EDW50588.1| GM14709 [Drosophila sechellia]
          Length = 1759

 Score = 42.7 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/157 (7%), Positives = 38/157 (24%), Gaps = 5/157 (3%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +   +       +      +     + ++         ES     +N  +++ +    +R
Sbjct: 287 EINRSREKSQHKNDVRGKPNNRSHDINRNRGRTRERSKESHGKSTENSKNKDESRGTGRR 346

Query: 632 RRRRRRRRPATDHHD-----AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           + R R +   ++                 ++N          +    T     E      
Sbjct: 347 KSRERSQDKNSNRAKSMNLSKEKDEIEGELKNAASGKSQERDQSRGKTKDRSRERDRTRN 406

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                      +  +   +  +     K +    +R+
Sbjct: 407 KTREKSQARDQTKRKANDAEYTRVKSRKGSSSRDKRR 443


>gi|332846436|ref|XP_001135763.2| PREDICTED: putative NPIP-like protein LOC613037-like [Pan
           troglodytes]
          Length = 648

 Score = 42.7 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 33/151 (21%), Gaps = 3/151 (1%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A V          +A     +     +   L       S    +    +E        +R
Sbjct: 391 AEVKPSSPKPKRRRAAEVKPSSPEPKRRRPLRATEVKPSSPKPKRGREAEVKPSSPEPKR 450

Query: 633 RRR---RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           RR    +   P  +   A  V   S        +               ++  +      
Sbjct: 451 RREAELKPSSPKPNRWRAAEVKPSSPKPKRRRAAEVKPSPKPKWRRAAEVKPSSPKPKRR 510

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
               + P S        +   P   K +  +
Sbjct: 511 RAAEVKPSSPKPKRRRATEVKPSSPKPKRRR 541



 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 40/166 (24%), Gaps = 15/166 (9%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSESLEDIQDNIVSEEST 625
           + + V+       +  +    PS  K       + +   P PK     +++ +    +  
Sbjct: 344 RAAAVKTSSPKPKRRRAAEVKPSSPKLKRRRAAEVKPSSPKPKRRRAAEVKPSSPKPKRR 403

Query: 626 G-------VIRKRRRRRRR------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                       +RRR  R        P         V   S       ++      P  
Sbjct: 404 RAAEVKPSSPEPKRRRPLRATEVKPSSPKPKRGREAEVKPSSPEPKRRREAELKPSSPKP 463

Query: 673 IT-NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  ++  +          + P   P+   +        K  R
Sbjct: 464 NRWRAAEVKPSSPKPKRRRAAEVKPSPKPKWRRAAEVKPSSPKPKR 509



 Score = 37.3 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 27/121 (22%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             V          +A     +     +  A    P S   +  +   V   S    ++R 
Sbjct: 528 TEVKPSSPKPKRRRASEVKPSSPKPKRRRAAEVKPSSPEPKRRRAAEVKPSSPKPKKRRA 587

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
              +   P      A  V   S   N    + +    P            +    +    
Sbjct: 588 AEVKPSSPKPKWRRAAEVKPSSPKPNRRRAAEEKPSSPKPKRRRATEVKPSSPKPKRQRA 647

Query: 693 S 693
           +
Sbjct: 648 A 648


>gi|325116558|emb|CBZ52112.1| putative protein phosphatase 2C [Neospora caninum Liverpool]
          Length = 1928

 Score = 42.7 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 29/158 (18%), Gaps = 8/158 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------ESLEDIQDN 618
           +    +   +      S+S      +      + ++  P  KS                 
Sbjct: 815 RSKAAKPDASAEEAADSESNDSGRREKRSRDGEQDSRSPSQKSRTKKVSRRSKAPKSDAP 874

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                 +     RRR +R R    D                         E     + + 
Sbjct: 875 EKEAADSESKDSRRREKRSRDEEQDSRSPSQKPRTKKGLRRSKAPKSDAPEKEAADSESK 934

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                   + + +      S               K  
Sbjct: 935 DSRRREKRSRDEEQDSRSPSQKPRIKKGVRRSKAPKPD 972



 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/158 (8%), Positives = 30/158 (18%), Gaps = 8/158 (5%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------ESLEDIQDN 618
            +    ++         S+S+     +      + ++  P  K                  
Sbjct: 865  RSKAPKSDAPEKEAADSESKDSRRREKRSRDEEQDSRSPSQKPRTKKGLRRSKAPKSDAP 924

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                  +     RRR +R R    D         +               E     + + 
Sbjct: 925  EKEAADSESKDSRRREKRSRDEEQDSRSPSQKPRIKKGVRRSKAPKPDASEEEAADSESN 984

Query: 679  LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                    + + +      S               K  
Sbjct: 985  DSGRREKRSRDEEQDSRSPSQKPRTKKGLRRSKAPKSD 1022



 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 33/151 (21%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E  SP +   ++  +    S+A S     E     E    IP+         +      +
Sbjct: 172 EGTSPRRLESSSKKRQRRGSKASSSPSAREDEPTAEDYAKIPRRSKARKSDASEEEAAES 231

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                RRR +R R    D                         E     + +        
Sbjct: 232 ASKHSRRREKRSRDEEQDSRSPSQNPRTKKGVRRSKAPKPDASEEEAADSESNDSGRREK 291

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            + + +      S               K  
Sbjct: 292 RSRDEEQDSRSPSQKPRTKKGVRRSKAPKPD 322



 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 34/150 (22%), Gaps = 10/150 (6%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +      A   +      + ++   +++     Q        +         +      +
Sbjct: 622 DASEEEAADSESNDSGRREKRSRDEEQDSRSPSQKPRTKKGVRRSKAPKPDASEEEAADS 681

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                RRR +R R    D                   +     +          +  A  
Sbjct: 682 ESKDSRRREKRSRDEEQDSRSPS----------QKPRTKKGSRQAKAPKPDAPEKEAAES 731

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +++           E  S  +S  P  KK
Sbjct: 732 ESKDSGRREKGSHDQEQTSRGTSQKPRTKK 761


>gi|237723188|ref|ZP_04553669.1| transcription termination factor rho [Bacteroides sp. 2_2_4]
 gi|229447710|gb|EEO53501.1| transcription termination factor rho [Bacteroides sp. 2_2_4]
          Length = 752

 Score = 42.7 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/163 (7%), Positives = 37/163 (22%), Gaps = 1/163 (0%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
           ++    ++                 S   +  K    V   +       +   ++     
Sbjct: 63  NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122

Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              E+     KR+  R R+   A +  +   V+  +                +      +
Sbjct: 123 AKAENATTAPKRKVGRPRKSADAEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPV 182

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +  A    ++   +             +    I K  +    
Sbjct: 183 QQPIAEKKAKSKPAAETNKPAAGPNKPVAEKKVIDKPQKKAAP 225


>gi|194770782|ref|XP_001967467.1| GF20725 [Drosophila ananassae]
 gi|190618477|gb|EDV34001.1| GF20725 [Drosophila ananassae]
          Length = 990

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 40/157 (25%), Gaps = 12/157 (7%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +            K     +   +D+      +  +     K   +   +     E S  
Sbjct: 296 RQEAATPEEEPPFKEDRAERRSVHDRLGTKAMESRSSQRTQKELYVPAHRRRGEPESSKD 355

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             ++ R + R R  + D  D+              D+      PS     +    G+   
Sbjct: 356 RGQRERSKDRSRDRSKDQRDSS------------KDTSRKRRSPSPSVGKSKQRIGSRVI 403

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   P       E   +S   I  + +   RR+
Sbjct: 404 VAVRKPPEPSDDEDIAEKPVNSVIKIKPRPQVSPRRQ 440


>gi|8163646|gb|AAF73780.1|AF154013_1 surface protein PspC [Streptococcus pneumoniae]
          Length = 730

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 10/231 (4%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           ++      +           +       V +       L N K     + E         
Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
            +   +   +   E+G P            +       D         E  LP P  +  
Sbjct: 243 KLKEAVEKNVATSEQGKPKGRAKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           + + +            K ++   RR   T+ +    +    S   V +   ++  E + 
Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + +    N A    E+       +   + +          KK     +RK
Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404


>gi|297691619|ref|XP_002823176.1| PREDICTED: SFRS2-interacting protein-like [Pongo abelii]
          Length = 1468

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 61/235 (25%), Gaps = 13/235 (5%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI-----VEYEARFGV 548
            ++      + ++  E + ++ + +       +   +  +Q  + +      + +     
Sbjct: 688 LTEHPRCTELPKTHTEQIQKHFSEDNNEMIPMECDSFCSDQNESEVEPSVNADLKQMNEN 747

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
           S+       ++      EK   V     +       ++ P   +            P   
Sbjct: 748 SVTHRSENNMSSSDLADEKVETVSQPSESPKDTIDKAKKP-RTRRSRFHSPSTTWSPNKD 806

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
           +   +    +      TG    +  R+  + P+  +  A       S     D + +   
Sbjct: 807 TPQEKKRPQSPSPTRETG----KESRK-SQSPSPKNESARGRKKSRSQSPKKDIARERRQ 861

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             S     +         +E+           +            +K+R   R +
Sbjct: 862 SQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRER 914


>gi|134078771|emb|CAK96884.1| unnamed protein product [Aspergillus niger]
          Length = 591

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 6/157 (3%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           +  E    V  +           Q     +  +    +  + P    E+   IQ+     
Sbjct: 404 YESEVEDDVIWVDERPISTTITPQTEVEPQLGKDKDHNATIPPPAHEEAPPTIQNPDPEP 463

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGV------VSDVSSIQNVIDDSFDMYMEPSDITNH 676
           ES      ++R R+R+ P  +   A         S      N + DS     +  +    
Sbjct: 464 ESNPAPAPKKRGRKRKNPVEEQPPAPAPAIDSQNSSSDKENNPVSDSDPTTHKQENTQQE 523

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              +    G  EN +      +T        +  P  
Sbjct: 524 PDQQPPQDGENENENEPQQEQNTTPSTPLKPNKGPTK 560


>gi|302822655|ref|XP_002992984.1| hypothetical protein SELMODRAFT_431144 [Selaginella moellendorffii]
 gi|300139184|gb|EFJ05930.1| hypothetical protein SELMODRAFT_431144 [Selaginella moellendorffii]
          Length = 549

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 39/164 (23%), Gaps = 7/164 (4%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQA----PSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            + +   V+    +  +    +      PS                + + ES +  +  +
Sbjct: 142 KVPRVVDVEVAEPSTPRKIVKAAGIGNGPSARTRSSPKTAPPPAA-VARVESRKKKKQPL 200

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              ES         +R R  P+         +           S              + 
Sbjct: 201 PVSESDAEEEAPPAKRARTEPSKRRE--VTRASTRRSLESGSGSKGRPSRRKSKVVSKIT 258

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  + +   +     TP      + S     + +  +RRK
Sbjct: 259 ALEVRVDSTSTLPAAKQEDTPRERKKVAKSGKGTAEKKTRERRK 302


>gi|254883345|ref|ZP_05256055.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643356|ref|ZP_07997982.1| hypothetical protein HMPREF9011_03583 [Bacteroides sp. 3_1_40A]
 gi|254836138|gb|EET16447.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384985|gb|EFV65938.1| hypothetical protein HMPREF9011_03583 [Bacteroides sp. 3_1_40A]
          Length = 504

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 6/117 (5%)

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
              +    L     ++      ++V +ES     KR+     R+      + G   + + 
Sbjct: 319 RRGEKPESLTESVKKNEPQKPVDLVEQESLTRFDKRKGNNSNRKKKRKPENNGNNGEGTP 378

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +N          +P +  +    EN             P  +  +     + + P 
Sbjct: 379 NENRRP------QQPKENRSQQPKENRPPREGRPKQPREPKENKAQQPREENGNRPK 429


>gi|189239637|ref|XP_971697.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
           castaneum]
          Length = 1712

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 2/153 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK    +             +     K+ E   ++        S    D  ++       
Sbjct: 440 EKDDDERKEDEKSGSEDKVKKKTEVKKDDEKKRKEIVENSDTNSSDATDQSESAPGSSKD 499

Query: 626 GVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           G   +R  + + ++ +       A  V +V               +P          +  
Sbjct: 500 GGRPRRLDKSKEKKIKQIIAPEKAKTVENVKKEDEEKMQQTRSKSQPVKPKEVVNNLSQK 559

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                    S PP   P  + S+       KKT
Sbjct: 560 KETKPGETPSKPPPQKPIAKKSDDEKKRGRKKT 592


>gi|169854353|ref|XP_001833851.1| hypothetical protein CC1G_01528 [Coprinopsis cinerea okayama7#130]
 gi|116504986|gb|EAU87881.1| hypothetical protein CC1G_01528 [Coprinopsis cinerea okayama7#130]
          Length = 1988

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 4/139 (2%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           GS  Q       +     +        +   + E      +    +D       E     
Sbjct: 110 GSGAQRGDEVKERRERREKDREKRDREKDRDKKEKEKDRERRHRSKDRSSTRDKERDKDK 169

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             +R+ R R    +T  + +    D    +   D S       SD  + +  +  A    
Sbjct: 170 KERRKDRER----STTRNRSKERKDRHRSKERKDRSDKKDRSKSDRKHESTKKPPAPPPP 225

Query: 688 ENYDVSIPPVSTPEMESSN 706
                  P   +   E S+
Sbjct: 226 PPEAPDTPITDSTGSEESS 244


>gi|38181902|gb|AAH61522.1| LOC23117 protein [Homo sapiens]
          Length = 420

 Score = 42.7 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 5/154 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 250 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 309

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHNLLENGA 683
            ++ +R+R       P       G V      +       +    EP      ++  +  
Sbjct: 310 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 369

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  DV             +       K+ R
Sbjct: 370 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRR 403



 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 274 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 333

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 334 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 393

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 394 EPSRKPKRRRAADVEPSLPEPKR 416



 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 32/146 (21%), Gaps = 2/146 (1%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
              + T  +       PS D N++            K    +  +   +  E     ++R
Sbjct: 273 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEM--EPPPEPKRR 330

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           R              A  V   S                        +E  +        
Sbjct: 331 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRV 390

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
             + P   P+   +      + +  R
Sbjct: 391 GDVEPSRKPKRRRAADVEPSLPEPKR 416


>gi|296199695|ref|XP_002747273.1| PREDICTED: PHD finger protein 20 isoform 1 [Callithrix jacchus]
 gi|296199697|ref|XP_002747274.1| PREDICTED: PHD finger protein 20 isoform 2 [Callithrix jacchus]
          Length = 1012

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 58/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+        ++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKRERFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLTCSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                K +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGEAKVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRVDKNSSQEKSKNYSENTDKD 322


>gi|260793276|ref|XP_002591638.1| hypothetical protein BRAFLDRAFT_80737 [Branchiostoma floridae]
 gi|229276847|gb|EEN47649.1| hypothetical protein BRAFLDRAFT_80737 [Branchiostoma floridae]
          Length = 771

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 10/149 (6%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES----------TG 626
               +  D    S     E + + EALL    SE    ++D    E              
Sbjct: 371 ESSTMNLDDIPDSPSSIEEELQRQEALLEQLHSELGAGVEDPEKEERLWEVQRIITQLKR 430

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
            +++ +         T        S  +  +    D+ +   + + I      +      
Sbjct: 431 QLKRAKTTYASSAAKTSTKQKEKESKPTETKPKEKDTKEPETKSAAIEKPAEEKPAEKKV 490

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           TE       P      E   +   P  KK
Sbjct: 491 TEKKPAQKKPAEKKPAEKKPAQKKPAEKK 519


>gi|195490501|ref|XP_002093167.1| GE20934 [Drosophila yakuba]
 gi|194179268|gb|EDW92879.1| GE20934 [Drosophila yakuba]
          Length = 1080

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 44/149 (29%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                     S+     K+     + +       S++ +  +D  +S++  G+  ++R  
Sbjct: 527 EKQRPNERQRSKERQRSKDRHRSRERQRSKERQLSKNRQLSKDRQLSKDRQGLKERQRSN 586

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
            R+R     H      S           S +         + +   +     +       
Sbjct: 587 ERKRSKERQHSKDRQRSRERQPSKDRQRSKERQRSKEPQQSKDRQRSKERQRSRERPAKE 646

Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           P  +    E S+ + D   +++     RK
Sbjct: 647 PRPTRSPRERSSKTRDDRRQRSPTNASRK 675


>gi|327298545|ref|XP_003233966.1| hypothetical protein TERG_05835 [Trichophyton rubrum CBS 118892]
 gi|326464144|gb|EGD89597.1| hypothetical protein TERG_05835 [Trichophyton rubrum CBS 118892]
          Length = 659

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 43/162 (26%), Gaps = 4/162 (2%)

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
            +    + +     +++G   +    +            +   I     DEA       E
Sbjct: 255 KLQSPPKDSTPDAGLDRGDSPEPNDPSVPGDEPTESPRVHYPPIIDEQVDEAPEQTEDKE 314

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
           + ++      + E  G           + P+ +  +A  V   ++ +           E 
Sbjct: 315 ASDNPVVASPAAEDDGGDPVS----ENQLPSPEAQEAQDVEPDTTQREGPSVRDQDSPEN 370

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                 N  +    G   +        S  + +    S+ P+
Sbjct: 371 RVTAPKNSRKRKKKGQGTDAPTQKGKASQKKDKGEERSTVPV 412


>gi|153808574|ref|ZP_01961242.1| hypothetical protein BACCAC_02870 [Bacteroides caccae ATCC 43185]
 gi|149128896|gb|EDM20113.1| hypothetical protein BACCAC_02870 [Bacteroides caccae ATCC 43185]
          Length = 749

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 38/149 (25%), Gaps = 1/149 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +     A  +      +        K        +       +   ++     V  E+T 
Sbjct: 86  RSRVAPAKKDNKVVSATKEGEAEKAKEAAPAKPQQPSKKEESANKEKETPAVEVKAENTA 145

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +++  R R+   A +  +   V   +     + +   +  E +       +   A   
Sbjct: 146 APKRKVGRPRKNADAAEQKEVESVKTATPATPKVTE-DKVVTEKAPEVIEKAVPAQAPEK 204

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               +                 ++P++ +
Sbjct: 205 KTKANKPAEEKKVVVKPQPQKKAEPVIDE 233


>gi|315044065|ref|XP_003171408.1| hypothetical protein MGYG_05954 [Arthroderma gypseum CBS 118893]
 gi|311343751|gb|EFR02954.1| hypothetical protein MGYG_05954 [Arthroderma gypseum CBS 118893]
          Length = 1082

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 52/220 (23%), Gaps = 8/220 (3%)

Query: 507  VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566
             EE   +             ++     ++R    E E R       +    LA       
Sbjct: 863  DEERRKKLAEEKAAREEQRKLLDEQAAKQRQREEEVEKRLAAKKAGMPDPRLA----RAP 918

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
              +  +       +  +     +        W++                D   +     
Sbjct: 919  PTAAAEPSRTDSTERTAPRLNLTSRAGAGASWREREAAKKAAPSGEPPAADESSAPPPRT 978

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
            +  +  R    R       D G    +            +++   +   +      +   
Sbjct: 979  LPGREPRELPSREREPPARDLGARDALRKPSGSSGAYVPVHLRGRNSPANGSAPPFSARR 1038

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVK----KTRWWKRR 722
              +   + PPV+      ++S   P  K     +  W+ R
Sbjct: 1039 EVSSSDARPPVARSPAPPADSEGKPEAKLPPPSSGAWRPR 1078


>gi|154338640|ref|XP_001565542.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1770

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/151 (7%), Positives = 23/151 (15%), Gaps = 1/151 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
           A     +           +             P          +      +      KRR
Sbjct: 770 AKTTPPYSSPPKQLVAKGEAETPKGEAQRGRGPQKGKRRPRKGKRRPQKGKRRPQKGKRR 829

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
            ++ +RRP                            +                       
Sbjct: 830 PQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGK-RRPRKGKRRPQK 888

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   +         P   K R  K ++
Sbjct: 889 GKRRPRKGKRRPQKGKRRPQKGKRRPQKGKR 919



 Score = 41.5 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 34/171 (19%), Gaps = 4/171 (2%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
              +     + KG   +       +     +     +  +   Q     P       +  
Sbjct: 775 PYSSPPKQLVAKGE-AETPKGEAQRGRGPQKGKRRPRKGKRRPQKGKRRPQKGKRRPQKG 833

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRP---ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           +      +      KRR ++ +RRP                   +           +   
Sbjct: 834 KRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPRKGKRRPQKGKRRP 893

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  + G     +           P+             +    + +K
Sbjct: 894 RKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQK 944



 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/156 (7%), Positives = 27/156 (17%), Gaps = 2/156 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                 +       +     S  K  +     +       +    +  +      +    
Sbjct: 758 RKTDKPLAASFAAKTTPPYSSPPKQLVAKGEAETPKGEAQRGRGPQKGKRRPRKGKRRPQ 817

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-LLENGAHGF 686
             KRR ++ +RRP                            +                  
Sbjct: 818 KGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKR 877

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                   P                  ++ +  KRR
Sbjct: 878 RPRKGKRRPQKGKRRPRKGKRRPQKGKRRPQKGKRR 913



 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 27/133 (20%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K  P +             +     +  +   Q     P       +  +      +   
Sbjct: 841 KRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPRKGKRRPQKGKRRPRKGKRRP 900

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              KRR ++ +RRP                            +           +GA   
Sbjct: 901 QKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRRMKTGVSGAAAS 960

Query: 687 TENYDVSIPPVST 699
                 + P   T
Sbjct: 961 ITPRAANRPTAHT 973


>gi|109638462|ref|YP_656668.1| ORF13 [Ranid herpesvirus 1]
 gi|109138230|gb|ABG25707.1| ORF13 [Ranid herpesvirus 1]
          Length = 3149

 Score = 42.7 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 8/138 (5%)

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-----RRRRRRRRR 639
           +++P+ DK         + L +          +N    +  G  R+       R + RR 
Sbjct: 75  ARSPAKDKTRPRRSSSRSPLKVRSKTQRNSPTNNKAPAKERGKARRPASPPEGRNKARRS 134

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
            +            S I+           +         +     G        + P+ T
Sbjct: 135 TSPTKERGRAKRSASPIKERGRTRRSPTPDNERSKPGGAVSPAKEG---ARSRRVDPLPT 191

Query: 700 PEMESSNSSSDPIVKKTR 717
            +   +  S+ P  KK +
Sbjct: 192 KDRSKARRSASPTRKKAK 209



 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 32/159 (20%), Gaps = 5/159 (3%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I+     +       +  S S+    ++                   L+       +  
Sbjct: 46  SIDSNPSHERRRGRHERERSRSRDRPRERARSPAKDKTRPRRSSSRSPLKVRSKTQRNSP 105

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +      + R + RR  +            S  +                          
Sbjct: 106 TNNKAPAKERGKARRPASPPEGRNKARRSTSPTKERGRAKRSASPIKERGRTRRSPTPDN 165

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                   VS          + +   DP+  K R   RR
Sbjct: 166 ERSKPGGAVSPAKEG-----ARSRRVDPLPTKDRSKARR 199


>gi|307166162|gb|EFN60411.1| Retinoic acid-induced protein 1 [Camponotus floridanus]
          Length = 1434

 Score = 42.7 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 7/158 (4%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED--IQDNIVSE 622
           +EK       + +   +GS    P  +K+   V          KS + ED  +     ++
Sbjct: 778 LEKLGDGNKKLGSSENIGSVIVTPIEEKDTSSVKSMSPERQKSKSPNREDEVVSPAFSND 837

Query: 623 ESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
           +S    ++RR+R+     R  + +    +   +      ++ I DS       S  T  +
Sbjct: 838 DSNDNTKQRRKRKLEKPVRLSKDSKTEVEDMELEPTEPTESRIIDSISEEAASSAPTTDS 897

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           +             +S   +     E  +  + PI ++
Sbjct: 898 VKTEEQIARGAEERISNKTIVDENAEEISEENQPIRRR 935


>gi|91093513|ref|XP_969441.1| PREDICTED: similar to tpr repeat nuclear phosphoprotein [Tribolium
            castaneum]
 gi|270002675|gb|EEZ99122.1| hypothetical protein TcasGA2_TC005228 [Tribolium castaneum]
          Length = 1187

 Score = 42.7 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%)

Query: 510  YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-ARFGVSINVVIGIELADKLFYIEKG 568
               Q          H      +  ++R    + E  R    +  +   +  ++   + K 
Sbjct: 812  EARQCKDLLSQAQYHVARARRVDEEERQLRRKQEDERTAFKMRQLEEQKKVEEEMRLTK- 870

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +        +   ++       + +   + +       S+S  D ++    E      
Sbjct: 871  EQLLQKRQEYKEKTKNALLFMEIPSEKTKGKGKGRKDQYISDSGSDRENQEGGEPKERGR 930

Query: 629  RKRRRRRRRRR--PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
            +++R + R+R+        + G  SD  S +     S   + E          + G    
Sbjct: 931  KRQRSKDRKRKGGSGRKRREKGGHSDSESDRPKNKRSRKKFKESK----GKQKDEGLSAK 986

Query: 687  TENYDVSIPPVSTPEMESSNSS---SDPIVKKTRWWKRR 722
             ++  VS   +ST E +S +     +      +R  KR+
Sbjct: 987  QKSRIVSKATISTSEDDSDDGKLKIASGDESDSRGRKRK 1025


>gi|281346233|gb|EFB21817.1| hypothetical protein PANDA_010353 [Ailuropoda melanoleuca]
          Length = 3648

 Score = 42.7 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 1/146 (0%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              +A   +     S     +   + +    + +    P  E+    ++  ++ +  G  +
Sbjct: 2256 ETEAATESSGPPASAPDPSAGPADTKEAGGNSSETSHPVPEAKGAKEEVPLARKEKGRQK 2315

Query: 630  KRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              R RR+R     T       V +   +Q+    + +    P+        +        
Sbjct: 2316 TSRSRRKRNTNKKTGGTAETHVPEPDQVQSKSPATDEGTAVPAPEAPQEEQQREKPQSAP 2375

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVK 714
                +  P  TP +E+ +  S    K
Sbjct: 2376 PECCAPDPSKTPSVENPSQESSVEEK 2401


>gi|114645173|ref|XP_001164885.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 1 [Pan troglodytes]
          Length = 1400

 Score = 42.7 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900

Query: 720 KRRK 723
            R +
Sbjct: 901 SRER 904


>gi|4757118|emb|CAB42096.1| TashAT2 protein [Theileria annulata]
          Length = 1167

 Score = 42.7 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 12/178 (6%)

Query: 537 ATIVEYEARFGV---SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
             + + E +  +   SI +   I+       +E     Q  + TG            D +
Sbjct: 349 QEVEDIETQTDLPTGSIEIQTDIQ------EVENIDT-QTDIPTGSIETQTDIQEVEDID 401

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
           I+   Q+   + I    +  DI +     E   V ++R  R R+ +P  +          
Sbjct: 402 IQTDIQEVEDIGIQTIGNFSDITEVTKKHEKPEVPKRRPGRPRKHKPEPEQPKRKRGRP- 460

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                   +                  + +   T+ +        + +    +    P
Sbjct: 461 -RKHKPEPEQPKRKRGRPRKQKPEPESDHSEESTQPHPQEQETEDSIKALGPSPEKRP 517


>gi|301772092|ref|XP_002921461.1| PREDICTED: msx2-interacting protein-like [Ailuropoda melanoleuca]
          Length = 3673

 Score = 42.7 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 1/146 (0%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              +A   +     S     +   + +    + +    P  E+    ++  ++ +  G  +
Sbjct: 2281 ETEAATESSGPPASAPDPSAGPADTKEAGGNSSETSHPVPEAKGAKEEVPLARKEKGRQK 2340

Query: 630  KRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              R RR+R     T       V +   +Q+    + +    P+        +        
Sbjct: 2341 TSRSRRKRNTNKKTGGTAETHVPEPDQVQSKSPATDEGTAVPAPEAPQEEQQREKPQSAP 2400

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVK 714
                +  P  TP +E+ +  S    K
Sbjct: 2401 PECCAPDPSKTPSVENPSQESSVEEK 2426


>gi|84998916|ref|XP_954179.1| Tashat2 protein [Theileria annulata]
 gi|65305177|emb|CAI73502.1| Tashat2 protein [Theileria annulata]
          Length = 1163

 Score = 42.7 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 12/178 (6%)

Query: 537 ATIVEYEARFGV---SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
             + + E +  +   SI +   I+       +E     Q  + TG            D +
Sbjct: 345 QEVEDIETQTDLPTGSIEIQTDIQ------EVENIDT-QTDIPTGSIETQTDIQEVEDID 397

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
           I+   Q+   + I    +  DI +     E   V ++R  R R+ +P  +          
Sbjct: 398 IQTDIQEVEDIGIQTIGNFSDITEVTKKHEKPEVPKRRPGRPRKHKPEPEQPKRKRGRP- 456

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                   +                  + +   T+ +        + +    +    P
Sbjct: 457 -RKHKPEPEQPKRKRGRPRKQKPEPESDHSEESTQPHPQEQETEDSIKALGPSPEKRP 513


>gi|317032623|ref|XP_001394101.2| hypothetical protein ANI_1_1612094 [Aspergillus niger CBS 513.88]
          Length = 535

 Score = 42.7 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 6/157 (3%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           +  E    V  +           Q     +  +    +  + P    E+   IQ+     
Sbjct: 348 YESEVEDDVIWVDERPISTTITPQTEVEPQLGKDKDHNATIPPPAHEEAPPTIQNPDPEP 407

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGV------VSDVSSIQNVIDDSFDMYMEPSDITNH 676
           ES      ++R R+R+ P  +   A         S      N + DS     +  +    
Sbjct: 408 ESNPAPAPKKRGRKRKNPVEEQPPAPAPAIDSQNSSSDKENNPVSDSDPTTHKQENTQQE 467

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              +    G  EN +      +T        +  P  
Sbjct: 468 PDQQPPQDGENENENEPQQEQNTTPSTPLKPNKGPTK 504


>gi|148674240|gb|EDL06187.1| mCG5243, isoform CRA_a [Mus musculus]
          Length = 1004

 Score = 42.7 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 107 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 165

Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           V++NV        L  +     +                     S  KN +   ++ +  
Sbjct: 166 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 221

Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                   + E   +       +E+    +++R R     P     ++  +  ++     
Sbjct: 222 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 281

Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693
              S            + N  +  +   +EN D  
Sbjct: 282 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 316


>gi|26328781|dbj|BAC28129.1| unnamed protein product [Mus musculus]
          Length = 1004

 Score = 42.7 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 107 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 165

Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           V++NV        L  +     +                     S  KN +   ++ +  
Sbjct: 166 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 221

Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                   + E   +       +E+    +++R R     P     ++  +  ++     
Sbjct: 222 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 281

Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693
              S            + N  +  +   +EN D  
Sbjct: 282 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 316


>gi|221488108|gb|EEE26322.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1575

 Score = 42.3 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 33/155 (21%), Gaps = 7/155 (4%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                          +D++ P      E   +         +    D             
Sbjct: 246 VKADTDAPGAVPWQHADAKKPRAPGKHEVDQKSGEAKADADNRPAGDASGGASQSGQHAA 305

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                 RRR +       +  ++       +   D  D               +G     
Sbjct: 306 ETDESYRRREKTKKEHSDEGALLRPKKKRGDKKADEGDESPTKKRKERPGEEGDGKTAKE 365

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +N       +          +  P+ ++ R  KRR
Sbjct: 366 QNKAREGGGL-------EGGAKKPLSRQKRLKKRR 393


>gi|302913178|ref|XP_003050861.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731799|gb|EEU45148.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 4743

 Score = 42.3 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 1/136 (0%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEEST 625
            +  P             +S AP+            +  P P  E     +     ++ES 
Sbjct: 4594 RPRPDDIRDRPSTAEREESVAPAPAPRRRFFGIKTSDNPPPAREEPAVAEPIRERAKESP 4653

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             V   +R R + RRP     +A   S  +  +   +   D    PS     +  ++    
Sbjct: 4654 PVEEPKRTRSKYRRPRESMDEARPRSRRTRDEPAPESPRDRDARPSRHVRMDTEDSRRKA 4713

Query: 686  FTENYDVSIPPVSTPE 701
              E    +       +
Sbjct: 4714 RHEERRKAQAKEEEKK 4729


>gi|255692689|ref|ZP_05416364.1| transcription termination factor Rho [Bacteroides finegoldii DSM
           17565]
 gi|260621573|gb|EEX44444.1| transcription termination factor Rho [Bacteroides finegoldii DSM
           17565]
          Length = 731

 Score = 42.3 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 8/152 (5%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
                    V +               + +       +   ++        E+    +++
Sbjct: 72  TPAKKEDKVVSATKTGEVTKTKEAATAKAQQTPKEETTNKEKETPAVETKAENAVTPKRK 131

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             R R+    TD  +          +     S  +  +P                 +   
Sbjct: 132 VGRPRKNSDTTDKKEVE--------ETKQVASNSVEAKPVVAEKTPETTEKTAPAQQPSA 183

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 S P +E    +++  V+K    K +K
Sbjct: 184 EKKEKPSKPTVEKDKPAAEKTVEKKVVAKPQK 215


>gi|315453859|ref|YP_004074129.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179]
 gi|315132911|emb|CBY83539.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179]
          Length = 556

 Score = 42.3 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 78/275 (28%), Gaps = 18/275 (6%)

Query: 31  ESEHKKQIKGNIYLAKVTRVEPSLQ--AAFVDYGGNRHGFLPFLEI-------HP-DYYQ 80
           E    K   G  Y  KV  V  S++    FVD G +  GFL   EI       HP DY  
Sbjct: 280 EEIQTKLKVG--YAIKV--VVSSIENYGVFVDIGNDIEGFLHISEISWNKDVKHPGDYLS 335

Query: 81  IPFSDRQALLKESNIAQT---DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET-EEE 136
           +       +++  +  +      + ++D   +  V+      L E   ++          
Sbjct: 336 VDQEIDVKIIEIDSKNRRLRVSLKQLSDKPFNEFVSKHRVGDLVEGKVVSLTDFGAFVNL 395

Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
             +           +      +        Q  I  + K  + + ++   ++        
Sbjct: 396 GGVDGLLHNKDAFWEADKKCVDHFKVGDTVQAKIARINKEDEKISLETKSKQPSPVEIFN 455

Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
             Y         ++     G  +     + + +       +  E+  G  V        +
Sbjct: 456 RQYKVGDTIQGSVVSIKDFGIFVQVDGIDVLIKTEDLGPLKKEEIQMGQDVSSVLISVDK 515

Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291
               ++     L    +  +  A N+    +   +
Sbjct: 516 ATNRVRASVRRLEHKREREQLQAFNATGGRMTLGD 550


>gi|315045227|ref|XP_003171989.1| IRE protein kinase [Arthroderma gypseum CBS 118893]
 gi|311344332|gb|EFR03535.1| IRE protein kinase [Arthroderma gypseum CBS 118893]
          Length = 1150

 Score = 42.3 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 39/172 (22%), Gaps = 5/172 (2%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD--EALLP 605
            +I  +    +      IE+    +        V    +     +  E V +   E +  
Sbjct: 542 KNIISIPDSSVTTSSKEIEQKPTDEQTEYPSLVVHPPPEKEEQKEPDEPVAESKAEPVAV 601

Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
            P + S    + N  +  +               PA               Q       +
Sbjct: 602 DPNASSPLSSESNQETPSAEAQTPNAGEPAEAEDPAAKTPRKKARRGRRGGQAHKRGKKN 661

Query: 666 MYMEPSDITNHNLLENGAHGF---TENYDVSIPPVSTPEMESSNSSSDPIVK 714
                      +              +  +   P +T  +++  +     +K
Sbjct: 662 TQDSADPDNPPSQSGGSQGARFNLQPDLQLVRTPSNTEVIDADGAIRIGQLK 713


>gi|67525459|ref|XP_660791.1| hypothetical protein AN3187.2 [Aspergillus nidulans FGSC A4]
 gi|40743764|gb|EAA62951.1| hypothetical protein AN3187.2 [Aspergillus nidulans FGSC A4]
          Length = 676

 Score = 42.3 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 17/168 (10%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             + +   K  + ++ P      E   Q       P  +  ED  D++  ++       +
Sbjct: 85  SRITSKKQKASTSTEQPDLPAPEEPTPQPSPRRGRPPKKRAEDRSDDVARQKKASEGTGK 144

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG------ 685
           R+ R + + A +           + Q+   +         +      +E           
Sbjct: 145 RQTRGKTKNALEPEPEPKPHPHPNPQSERSERSTRKRGEEEQVQQVSVEKKRKKGRPSKS 204

Query: 686 ---------FTENYDVSIPPVSTPEMESSNSSSDPIV--KKTRWWKRR 722
                      E        ++ P  ++     +  +  KK+    RR
Sbjct: 205 QEEQRNGFVSPEQPQAGTATIALPVADTPVIQRNKEMRGKKSGKGSRR 252


>gi|302507870|ref|XP_003015896.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
 gi|291179464|gb|EFE35251.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
          Length = 673

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/208 (8%), Positives = 53/208 (25%), Gaps = 13/208 (6%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R  +  +         +    +V      + +    + +             + +     
Sbjct: 232 RKRKSVVQHPKKKRKSLLQPPEVPESHETEAKDGSEQLQ----------SSPKDSTPDAG 281

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +++G    +       V  +    S   +   +  ++      +    ++  DN V    
Sbjct: 282 LDRG---DSPDPNDPSVPGNEPTESPRVHSPPIIDEQVDEEASEQTDGKEASDNPVVPSP 338

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                        + P+ +  +A  V   ++ +           E       N  +    
Sbjct: 339 AAENDVGDLVSENQLPSPEAQEAQGVEPDTAQREGSSVRDQDNTENQVTAPKNSRKRKKK 398

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPI 712
           G   +        S  + +S   S+ P+
Sbjct: 399 GQGTDAPTQKGKASQKKDKSEGRSTVPV 426


>gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
 gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
          Length = 734

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 20/96 (20%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G +Y  KVTR+       AFV  GG + G +   +I      
Sbjct: 634 RIEEITAEIE-------VGRVYTGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 683

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109
              DY Q+       +L+     +            
Sbjct: 684 KVTDYLQMGQEVLVKVLEVDRQGRIRLSIKEATEQS 719


>gi|215820598|ref|NP_001135958.1| RE1-silencing transcription factor [Takifugu rubripes]
 gi|167857755|gb|ACA03866.1| NRSF/REST [Takifugu rubripes]
          Length = 954

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 3/158 (1%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            + F +++         T     + S   S         Q EA   +    S  + +   
Sbjct: 457 REDFEVDR---DNRDKGTDANPINLSIRRSSRPGNSQSAQTEAPDKVQDKTSRSEREKFG 513

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             +E    I  R++ +R      +       +  + I +    +    ++  +       
Sbjct: 514 KVKEQEKRITTRQKVKRAHEKVPEEEIHPGSTTATKIGDGKAKTKVRKLQAEEQNPTEPN 573

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           +       ++ D         +   S+      + K+R
Sbjct: 574 QTLKPDQRQSEDKRKMRPDKDKENQSSRKKKKGLNKSR 611


>gi|195470194|ref|XP_002087393.1| GE16349 [Drosophila yakuba]
 gi|194173494|gb|EDW87105.1| GE16349 [Drosophila yakuba]
          Length = 5330

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%)

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
             G     D    S         + EA       +S+ D   +  S  S    ++   R R
Sbjct: 1404 DGESPDYDDIPVSKIPRAANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1463

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            R   + +   A       S + +        + P      + L+        +       
Sbjct: 1464 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEL 1520

Query: 697  VSTPEMESSNSSSDP 711
             S     S N+    
Sbjct: 1521 DSNKRRSSRNTQRKK 1535



 Score = 40.0 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 43/174 (24%), Gaps = 16/174 (9%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I + +              DS   S         + +      +S   
Sbjct: 1406 ESPDYDDIPVSKIPRAANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1465

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             + ++   + ++ G +  +  ++RR R        G    +                   
Sbjct: 1466 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSELDSNKR 1525

Query: 673  ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             ++ N                   +      +     P   +SNS++   V+KT
Sbjct: 1526 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPTANASNSNAGSDVEKT 1579


>gi|123500047|ref|XP_001327755.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910689|gb|EAY15532.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3]
          Length = 1073

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 53/194 (27%), Gaps = 6/194 (3%)

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
            I       V     ++K + I + +      I +    E+      I+   P+      
Sbjct: 797 KIHKRRGKQVNELSRSEKSSEIND-QQFNSRKIKLREDDEMIIPQNNIQ-TQPLSPSKRK 854

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                       +    E    +  ++   K    + ++  +         + +R+R+  
Sbjct: 855 IAAPSLSKHRKQHQNPEEAQKIEPIVVVKKKRRHTKPVEQEVPPP---TNEKPKRKRKSH 911

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-ENGAHGFTENYDVSIPP 696
                D      + D  S+ +  D   +  + P  +                  + S   
Sbjct: 912 VSSKDDQPTPEFLHDRGSVISKSDRQIEAVISPGAVQPLRRKYRKHGMQSPPKKEESQSL 971

Query: 697 VSTPEMESSNSSSD 710
           + + ++E  + S  
Sbjct: 972 LQSIDIEDISISRK 985


>gi|270340223|ref|ZP_06007463.2| translation initiation factor IF2 [Prevotella bergensis DSM 17361]
 gi|270332218|gb|EFA43004.1| translation initiation factor IF2 [Prevotella bergensis DSM 17361]
          Length = 973

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 1/182 (0%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSP-VQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
           EA+  V         +A+    IEK  P  +      +      +   +  N E   Q+ 
Sbjct: 183 EAKKEVQPEKKPEKPVAEPEDTIEKTKPEAETQTAEANDGEEKKEPELFQLNSERRIQNA 242

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
             + +     L+ I  N    + T   R++ R  + ++          ++      N   
Sbjct: 243 PKVNVVGKIDLDAINQNTRPRKKTKEERRKEREDKAKQQGGGRRKRQRINKERVDINAAA 302

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           +        +         N             P     E  +          K++  + 
Sbjct: 303 NQQQNGKGGAANRGRGNNANSRGNNRNRRRNQKPVEINEEDIARQVKETLARLKSKQSQT 362

Query: 722 RK 723
           RK
Sbjct: 363 RK 364


>gi|259533520|sp|B0KWH8|THOC2_CALJA RecName: Full=THO complex subunit 2; Short=Tho2
 gi|166832197|gb|ABY90124.1| THO complex 2 isoform 1 (predicted) [Callithrix jacchus]
          Length = 1600

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 42/170 (24%), Gaps = 7/170 (4%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSE 610
            V   ++ +     ++         +      DS     + + +         L    + E
Sbjct: 1395 VPRSDIPEPEREQKRRKIDTHPSPSHSSTVKDSLIELKESSAKLYVNHTPAPLSKSKERE 1454

Query: 611  SLEDIQDNIVS---EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
              +   D       E      + R+ R+R            ++         +  S    
Sbjct: 1455 MDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDLIKRRKEENGTMGVSKHKS 1514

Query: 668  MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              P +    N  +   +              + + E  +  S    K++R
Sbjct: 1515 ESPCESPYPNEKDKEKNKS--KSSGKEKGSDSFKSEKMDKISSGGKKESR 1562


>gi|159486197|ref|XP_001701130.1| hypothetical protein CHLREDRAFT_194230 [Chlamydomonas reinhardtii]
 gi|158272024|gb|EDO97832.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 620

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 38/150 (25%), Gaps = 6/150 (4%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                 +    P  + + +     +       S+ + D    +         +    R R
Sbjct: 50  ASALTVNADAQPKGEDSRDEGRGRDRQRNGGSSKQVADSSGAVNKRRGESPEKDSADRPR 109

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI----TNHNLLENGAHGFTENYDV 692
           +R+              +  + +         +  D     ++ +  ++   G  +    
Sbjct: 110 KRQAIVWEPPTAKEEAEAKEREMEKGRGKESRQEDDRWAGRSDRDREDDEVRGHHQQPQR 169

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           S       E +  +   D   K+     RR
Sbjct: 170 SKDKDRERERDGKDGKRD--SKEKATSSRR 197


>gi|157821507|ref|NP_001101265.1| PHD finger protein 20 [Rattus norvegicus]
 gi|149030825|gb|EDL85852.1| similar to Hepatocellular carcinoma-associated antigen 58 homolog
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 1010

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 60/212 (28%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    ++   L   ++  P                  S  KN +   ++ +     
Sbjct: 172 ATVNVKKN-QVEKALKTEKRPKPPDKEGKLTCPEKGRVSEKSLPKNEKEDKENISENERE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPEKDLVKSPQETLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFDMYME-PSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +   +EN D  
Sbjct: 291 SKRSDTPLKRPRLDKNSSQEQSKKRSENSDKD 322


>gi|25136577|gb|AAN65622.1| ELYS transcription factor-like protein TMBS62 [Homo sapiens]
          Length = 2302

 Score = 42.3 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 9/232 (3%)

Query: 469  RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSD 526
            ++ +   +LE+T+ V    +      S+   +  +L    E   +      ++   T   
Sbjct: 1851 KKEVNQDILENTSSVGQELQITTGRESKRLKSSQLLEPAVEETTKKEVKVSSVTKRTPRR 1910

Query: 527  VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
            +   + NQ+   I+       + ++ V       +          +   N      SD Q
Sbjct: 1911 IKRSVENQESVEII-----NDLKVSTVTSPSRMIRKLRSTNLDASENTGNKQDDKSSDKQ 1965

Query: 587  APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
                        +      + +  +LE  Q  + +E     I ++R R R+  P+ D   
Sbjct: 1966 LRIKHVRRVRGREVSPS-DVREDSNLESSQLTVQAEFDMSAIPRKRGRPRKINPSEDVGS 2024

Query: 647  AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
               V +  S +     S       +       ++ G     ++  V    +S
Sbjct: 2025 K-AVKEERSPKKKEAPSIRRRSTRNTPAKSENVDVGKPALGKSILVPNEELS 2075


>gi|328792223|ref|XP_623719.3| PREDICTED: hypothetical protein LOC551319 [Apis mellifera]
          Length = 8130

 Score = 42.3 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/165 (8%), Positives = 33/165 (20%), Gaps = 7/165 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            EK                       +K  +          + +    ++       E++ 
Sbjct: 839  EKSKEDTEKKGMKPGEKKKQNKSKMEKVRDESEIAMNQANMKEQVKSKNDTKESKEEKNI 898

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                 +   +  +           +  V +I N+         +   +     +      
Sbjct: 899  EKRNAKDEAKISKEKVEKIQKEKDIKSVENIGNLDQSQKQEDTKSVKLVKSEKISETKVE 958

Query: 686  FTENYDVSIPPVSTPEM-------ESSNSSSDPIVKKTRWWKRRK 723
              E            +          +  S D   KK    K  K
Sbjct: 959  SKEKEPAKSKEQDKSKKNKKQKQGTENEVSKDQTPKKQGQQKEEK 1003


>gi|114645167|ref|XP_509017.2| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 9 [Pan troglodytes]
          Length = 1463

 Score = 42.3 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 739 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 798

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910

Query: 720 KRRK 723
            R +
Sbjct: 911 SRER 914


>gi|149209523|ref|XP_001522136.1| hypothetical protein MGCH7_ch7g244 [Magnaporthe oryzae 70-15]
 gi|86196199|gb|EAQ70837.1| hypothetical protein MGCH7_ch7g244 [Magnaporthe oryzae 70-15]
          Length = 642

 Score = 42.3 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 8/177 (4%)

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK---NIECVWQDEALLP 605
            I+V        K    E     +   +   +  + + A    +   N   V+ +E  L 
Sbjct: 193 KISVASNGHTISKEKEKEPPKSPKGRESKSSRAAAAALASHKRRSTLNSRHVYDEEEELR 252

Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                S E+      SE ST  +++ R     +   T     G  S     ++ I D  D
Sbjct: 253 RAIEASKEEAGTGEPSEGSTKRVKRGRSDSEEKTEFTKRQRTGSRSPTPVDESAIQDDSD 312

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                +                 +   +       +   + +      +K+R  +RR
Sbjct: 313 DGPSKTSSQKSKSRNPTVRNQQRDLQKAEKEEREKQKAEAANK-----RKSRAERRR 364


>gi|332839598|ref|XP_001165201.2| PREDICTED: protein SCAF11 isoform 8 [Pan troglodytes]
          Length = 1463

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 739 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 798

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910

Query: 720 KRRK 723
            R +
Sbjct: 911 SRER 914


>gi|114645171|ref|XP_001165167.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 7 [Pan troglodytes]
          Length = 1437

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900

Query: 720 KRRK 723
            R +
Sbjct: 901 SRER 904


>gi|321473434|gb|EFX84401.1| hypothetical protein DAPPUDRAFT_222916 [Daphnia pulex]
          Length = 1418

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 84/316 (26%), Gaps = 38/316 (12%)

Query: 424  VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483
            + D      ++N R V K +   ++KD+         N  L+E    R+ +S  E  ++ 
Sbjct: 1124 LCDPEAAVAEENFRVVLKGIIVLIQKDKQ--------NESLVEKIILRLGASRTERQSRD 1175

Query: 484  CTYC------KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537
              YC            R        I   + E  +      +     +    +   + R 
Sbjct: 1176 LMYCLSLLSFNERSLRRILEHW-NCISDKIHEEGV---VETLNAILTTTKKAFAKQEIRG 1231

Query: 538  TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
             I E EA+   ++      +       + + +    +           +           
Sbjct: 1232 LIDEIEAKIQETV------DADQDEQQVVRKAQATQVTKAQAPKNKPKRKQRAKDLDSEE 1285

Query: 598  W----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                  DE  +P   +        N  S    G   +  R++      +   ++ V  + 
Sbjct: 1286 EVSMDDDEPEMPGHPAHLGTPHSPNKKSPLRHG---RNIRKKIAIPQVSSDDESSVEEEK 1342

Query: 654  SSIQNVIDDSFDMYMEPSDITN-------HNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
                +   +     +      N                    + DV I P S  ++    
Sbjct: 1343 DDDDDSEKEDRKAQLAAKSKKNMGSTRSIRATRRQTEADSGSDQDVFIKPASRGKLNPGK 1402

Query: 707  SSSDPIVKKTRWWKRR 722
            +      K T    RR
Sbjct: 1403 NKLPEKKKSTTTRSRR 1418


>gi|194853302|ref|XP_001968138.1| GG24671 [Drosophila erecta]
 gi|190660005|gb|EDV57197.1| GG24671 [Drosophila erecta]
          Length = 5335

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%)

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
             G     D    S         + EA       +S+ D   +  S  S    ++   R R
Sbjct: 1409 DGESPDYDDIPVSKIPRGANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1468

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            R   + +   A       S + +        + P      + L+        +       
Sbjct: 1469 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEM 1525

Query: 697  VSTPEMESSNSSSDP 711
             S     S N+    
Sbjct: 1526 DSNKRRSSRNTQRKK 1540



 Score = 41.9 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 16/174 (9%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I +G+              DS   S         + +      +S   
Sbjct: 1411 ESPDYDDIPVSKIPRGANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1470

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             + ++   + ++ G +  +  ++RR R        G    +                   
Sbjct: 1471 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKR 1530

Query: 673  ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             ++ N                   +      +     P   +SNS++   V+KT
Sbjct: 1531 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKT 1584


>gi|194770864|ref|XP_001967507.1| GF20705 [Drosophila ananassae]
 gi|190618517|gb|EDV34041.1| GF20705 [Drosophila ananassae]
          Length = 580

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 45/216 (20%), Gaps = 8/216 (3%)

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
               ++         +     + +  +      +   R   ++ V        +    EK
Sbjct: 85  RNIAVKDEIKEESGESPPAPAIRIKQEPLDDEEDLWGRKAATVKVKDEFSPQKRQIKQEK 144

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
            S  + L     K   +    S  +      Q         S+     +           
Sbjct: 145 RSRSRDLSPERSKKKKNHPDQSPPRRKADRDQSPRGRKRKDSDQSPPRRARDSP-----P 199

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            R++     R+R ++D        D          +      P      + +        
Sbjct: 200 RRRQDASPVRKRRSSDQSPPRRRRDDDQSPPRRRRNDSDQSPPRKRREPSPV---RRRRD 256

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +                  S        +   RR+
Sbjct: 257 SDQSPPRKRRDDDLSPPRRKSPPRRQDDDQSPPRRR 292


>gi|110764360|ref|XP_395879.3| PREDICTED: hypothetical protein LOC412422 [Apis mellifera]
          Length = 1811

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 57/218 (26%), Gaps = 23/218 (10%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
                I        V  L+ + R +    E +    I       L      I   S    
Sbjct: 736 DNESEITEVHDLQDVEELIKRDRKSRKREEKKS--PIIFEENKNLVPPSVSITPISSSSL 793

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
              T +                   +   + P     S   I       +S  +  +RR 
Sbjct: 794 GQTTNYNSVLTGMGL----ERRPGIEIIPIAPQTTLPSSITITPIPAPSQSKSLTDERRE 849

Query: 634 RRRRRRPATDHH------------DAGVVSDVSSIQNVIDDSFD---MYMEPSDITNHNL 678
           R+  +  +T+              D+ +      I +  D       + ++P++   +  
Sbjct: 850 RKSSKGKSTEDKGKLEKRRKRKREDSPMGPPPDKIPSKQDPLSKPVSVSIKPTESPPNMS 909

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +   T       P  ++P        S P +K++
Sbjct: 910 SRPSSPATTLRKFSPSPTHTSPLA--LVGKSSPTLKQS 945


>gi|83589898|ref|YP_429907.1| translation initiation factor 2 [Moorella thermoacetica ATCC 39073]
 gi|123752933|sp|Q2RJM5|IF2_MOOTA RecName: Full=Translation initiation factor IF-2
 gi|83572812|gb|ABC19364.1| bacterial translation initiation factor 2 (bIF-2) [Moorella
           thermoacetica ATCC 39073]
          Length = 903

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/157 (7%), Positives = 39/157 (24%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +            G         + +      E     P +             + + 
Sbjct: 137 RQAGDAPAAEGTAAAGQPLDGKELRQAVANGQGTEEPRQQPAATGQRAQGGEAGRGQQSR 196

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +KRR   R R+           ++  + ++           P++        +     
Sbjct: 197 QKKKRRGEGRSRQDENKGSAREDQANRFATRDKEAAPSAGQQSPAEKGQRRPAHSKPLRI 256

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +  +     +     + SN+       ++   ++R+
Sbjct: 257 PKPPEAVTKDLPEKRRDRSNARPGAKPAESGRSRKRE 293


>gi|324499538|gb|ADY39804.1| Msx2-interacting protein [Ascaris suum]
          Length = 3599

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 42/313 (13%)

Query: 428  IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
            +DM  +K  + VEK L E             IS F   EM+++  +    ES+ K     
Sbjct: 2036 VDMPPEKKKQKVEKSLVE-------------ISMF--PEMNKKEPKQKKKESSRKTSEVK 2080

Query: 488  KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--- 544
            K     ++Q S      + + + L +                    ++     + E    
Sbjct: 2081 KAKEAEKAQVSKTEQFEKKLAKRLRKEQKEREEEQKREADESKKKKEENRIERDIEKSSG 2140

Query: 545  RFGVSINVVI----------------GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
            + G    +V                  +    +    E                 +  A 
Sbjct: 2141 QTGKEKEIVKTEKENREEEEDNIQKMEVTAETQHDEKESMKTETQSEEMPQNEVVEEAAV 2200

Query: 589  SYD-----KNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIRKRRRRRRRRRPA 641
              +     ++I+    +E +    + ++ E+I D       E     R+R+R+       
Sbjct: 2201 KEEYECSCESIDEKQLEEGIKQDDEHKTNENIVDLGEKPPLEDEVNERERKRKADENEGV 2260

Query: 642  TDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D       +     +  + DS     E     T                +  +  +S P
Sbjct: 2261 FDVKRVKEETKEEMPRKQLSDSDSSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEP 2320

Query: 701  EMESSNSSSDPIV 713
              +SS +++    
Sbjct: 2321 RSDSSTTAAVKSE 2333



 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 59/229 (25%), Gaps = 17/229 (7%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
                 ++      EE           V    +     +++K     + E           
Sbjct: 2174 HDEKESMKTETQSEEMPQNEVVEEAAVKEEYECSCESIDEK-----QLEEGIK-----QD 2223

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
                 ++        P         +    +       +++ V ++       K  S  D
Sbjct: 2224 DEHKTNENIVDLGEKPPLEDEVNERERKRKADENEGVFDVKRVKEETKEEMPRKQLSDSD 2283

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                   +++T   +  +RR  R+R   +  +        S       S         +T
Sbjct: 2284 SSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEPRSDSSTTAAVKSELSEESERLLT 2343

Query: 675  NHNLL-------ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              + +       E  +  ++   D S     + +  + +  S  +  +T
Sbjct: 2344 PSDTVVKPCVVDEPASEKYSLLEDASKWGAESAKSVTDDDESASVSART 2392


>gi|321468122|gb|EFX79109.1| hypothetical protein DAPPUDRAFT_319863 [Daphnia pulex]
          Length = 4355

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 34/137 (24%)

Query: 579  HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                S  ++P  +                  E++E       S+ +    ++  ++ +  
Sbjct: 3137 KNENSTKESPDVEGIAPEAMDVSKPEEKECVENVEKSNQEEPSDSNKDDDKQEEKKSKDV 3196

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
               ++  D     +  +     +       E          +       E+  V      
Sbjct: 3197 EDPSESEDESKTLEKKAESTEGEPKSSQKDEEVKNDTSENEKEAVVIKPESTTVEEITED 3256

Query: 699  TPEMESSNSSSDPIVKK 715
            TP       +    VKK
Sbjct: 3257 TPVHVKEEVTKLKPVKK 3273


>gi|124487307|ref|NP_766262.2| PHD finger protein 20 [Mus musculus]
 gi|32699545|sp|Q8BLG0|PHF20_MOUSE RecName: Full=PHD finger protein 20; AltName: Full=Hepatocellular
           carcinoma-associated antigen 58 homolog
 gi|123212046|emb|CAM26751.1| PHD finger protein 20 [Mus musculus]
 gi|148674241|gb|EDL06188.1| mCG5243, isoform CRA_b [Mus musculus]
          Length = 1010

 Score = 42.3 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171

Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           V++NV        L  +     +                     S  KN +   ++ +  
Sbjct: 172 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 227

Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                   + E   +       +E+    +++R R     P     ++  +  ++     
Sbjct: 228 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 287

Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693
              S            + N  +  +   +EN D  
Sbjct: 288 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 322


>gi|296234002|ref|XP_002762256.1| PREDICTED: hypothetical protein LOC100394361 isoform 1 [Callithrix
           jacchus]
          Length = 714

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 41/152 (26%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            Q+      +  S S++PS  K+              +S      +D   S   +    +
Sbjct: 387 SQSESPNKQRDCSRSRSPSEKKDHSQSGSPNKERDHSQSRIPSKEKDLSRSGSPSKERDQ 446

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            R R R R P+ +       S           S           + +         + + 
Sbjct: 447 ERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQ 506

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           + +     +P  E     S    K++     R
Sbjct: 507 ERARGRSRSPSQERDRGRSGSPSKESERRHSR 538



 Score = 41.1 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 38/142 (26%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK    Q+      +  S S+ PS +K++             ++           +   +
Sbjct: 406 EKKDHSQSGSPNKERDHSQSRIPSKEKDLSRSGSPSKERDQERARGRSRSPSQERARGRS 465

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               + R R R R P+ +       S           S           + +   +    
Sbjct: 466 RSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRS 525

Query: 686 FTENYDVSIPPVSTPEMESSNS 707
            + + +       +P  E +  
Sbjct: 526 GSPSKESERRHSRSPSQERARG 547



 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 1/153 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q+ + +  K  S S +PS +++ E            ++           +   +   
Sbjct: 421 DHSQSRIPSKEKDLSRSGSPSKERDQERARGRSRSPSQERARGRSRSPSQERARGRSRSP 480

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + R R R R P+ +       S           S     +     + +      H  + 
Sbjct: 481 SQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRSGSPSKESERRHSRSP 540

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           + + +     +P  +  +        K R   R
Sbjct: 541 SQERARGCSRSP-SQERDHGRSGSPSKERERGR 572


>gi|256396921|ref|YP_003118485.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256363147|gb|ACU76644.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 795

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 38/156 (24%), Gaps = 8/156 (5%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                           +             + + +    +       +   +   +    
Sbjct: 618 ADADPATAPSSTDETEKPKRTRTRSRANAAEASSIATDATADATAEAEADTAALPSAEES 677

Query: 630 KRRRRRRRRRPATDHHDAGVV--------SDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           ++ +R R R    +               ++V+  +     S     E +  T   + E 
Sbjct: 678 EKPKRTRSRSRKPEAEQTEEAALVTEPATAEVTLPKQAGPRSRANAAEQTADTATAVEET 737

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                T +   S   V+     S  ++     K+TR
Sbjct: 738 AEPKRTRSRGRSATAVAETVEVSVGAADPGKPKRTR 773



 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/169 (7%), Positives = 41/169 (24%), Gaps = 9/169 (5%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-- 613
             +A +       +   A            +             + + +    +++    
Sbjct: 558 DTMATESAEAGTVAVADASAVIETAADEAEKPKRTRTRTRSNADETSAVAADVADTTPVT 617

Query: 614 -DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            D         +    + +R R R R    +  +A  ++  ++     +   D    PS 
Sbjct: 618 ADADPATAPSSTDETEKPKRTRTRSR---ANAAEASSIATDATADATAEAEADTAALPSA 674

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
             +       +         +        +    ++   + K+     R
Sbjct: 675 EESEKPKRTRSRSR---KPEAEQTEEAALVTEPATAEVTLPKQAGPRSR 720


>gi|37805450|gb|AAH60121.1| Phf20 protein [Mus musculus]
          Length = 1023

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171

Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           V++NV        L  +     +                     S  KN +   ++ +  
Sbjct: 172 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 227

Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                   + E   +       +E+    +++R R     P     ++  +  ++     
Sbjct: 228 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 287

Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693
              S            + N  +  +   +EN D  
Sbjct: 288 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 322


>gi|325114361|emb|CBZ49918.1| tryptophan-rich antigen (Pv-fam-a), related [Neospora caninum
           Liverpool]
          Length = 655

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 37/154 (24%), Gaps = 1/154 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +       +      A   ++  +     E     P   + E+ +  +  EE     
Sbjct: 219 KEEEEKPGVRKEEEKKKPAVREEEEKKKPAVREEEETKPAVGNQEEEKPGVRKEEEEEKP 278

Query: 629 RKRRRRRRRRRPATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             R+     +    +       V      +       +   +P+  T     +       
Sbjct: 279 GVRKEEEEEKPGVREEEKKKPGVRKEEEEKKPAVRKEEEEKKPAVGTEEADKKPAVGERE 338

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           E    ++        + +    +   KK    KR
Sbjct: 339 EKKKPALGKKEKKRRKPAVGKREEKKKKPALGKR 372


>gi|322704835|gb|EFY96426.1| transcription factor TFIID complex subunit Taf111 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1230

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 50/182 (27%), Gaps = 4/182 (2%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
            E         V   TT+ C  C   G+I++  + A    +  +    +       V    
Sbjct: 1045 EAGSPGAVDKVPTGTTRKCANCGQVGHIKTNKNAASH--KEGQAVPTKKQTRRKSVLHRL 1102

Query: 526  DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
                    ++R    + E R      V     +A +   +++    + + +   +  +  
Sbjct: 1103 MKSSNREAREREKRRQIEERATAR-KVRKEENMA-EKLKVQREREQKKIEDARLREEARR 1160

Query: 586  QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
            Q     +  +   ++       ++            E     + +    +R+R       
Sbjct: 1161 QEDQAREEKKRRQEELRAEKQQQANEQRRKAQEEREERRRLRLEREEENQRKREEKAKAR 1220

Query: 646  DA 647
              
Sbjct: 1221 PK 1222


>gi|147742927|sp|Q5U241|PD5BB_XENLA RecName: Full=Sister chromatid cohesion protein PDS5 homolog B-B;
            AltName: Full=Androgen-induced proliferation inhibitor B
          Length = 1464

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 43/184 (23%), Gaps = 4/184 (2%)

Query: 544  ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
             R      +      +          P       G K  + +         E   +++ L
Sbjct: 1216 RRGRKQPLIDPDDSFSMDELSKPAQEPKSRTSQRGRKRAAAASESEEQAWQEKRLKEDLL 1275

Query: 604  LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                +  S           +S  +   +             +   + S  +  ++ ++ S
Sbjct: 1276 ENEDEQNSPPKKGRRGRPPKSAKMAISKEEPPVTTPKRGRKNVVPIESPPTDEEDHLEIS 1335

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV----KKTRWW 719
             +   E  D        +       +   S    S P  +              KK+   
Sbjct: 1336 EEQDSENIDQKRKGRGSSKKTPQKSDSTDSALDTSRPTPQKRRGRPPKTPTVQQKKSHVG 1395

Query: 720  KRRK 723
            + RK
Sbjct: 1396 RPRK 1399



 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 27/238 (11%)

Query: 494  RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
             +Q   + +  R  +       +              L N+        + R G      
Sbjct: 1238 PAQEPKSRTSQRGRKRAAAASESEEQAWQEKRLKEDLLENEDEQNSPPKKGRRGRPPK-- 1295

Query: 554  IGIELADKLFYIEKGSP-VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK---- 608
                       I K  P V         V      P+ +++   + +++    I +    
Sbjct: 1296 ------SAKMAISKEEPPVTTPKRGRKNVVPIESPPTDEEDHLEISEEQDSENIDQKRKG 1349

Query: 609  ---SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
               S+      D+  S   T     ++RR R  +  T       V     + +   +S +
Sbjct: 1350 RGSSKKTPQKSDSTDSALDTSRPTPQKRRGRPPKTPTVQQKKSHVGRPRKVVSKEPESEE 1409

Query: 666  MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +          +   +EN   +    +  E+ + ++      KK RW +R K
Sbjct: 1410 EMEISQN----------SPALSEN-ISNEEETADEEVVAPSTGRRRTAKKRRWIQRMK 1456


>gi|284520926|ref|NP_001088643.2| sister chromatid cohesion protein PDS5 homolog B-B [Xenopus laevis]
          Length = 1449

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 43/184 (23%), Gaps = 4/184 (2%)

Query: 544  ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
             R      +      +          P       G K  + +         E   +++ L
Sbjct: 1216 RRGRKQPLIDPDDSFSMDELSKPAQEPKSRTSQRGRKRAAAASESEEQAWQEKRLKEDLL 1275

Query: 604  LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                +  S           +S  +   +             +   + S  +  ++ ++ S
Sbjct: 1276 ENEDEQNSPPKKGRRGRPPKSAKMAISKEEPPVTTPKRGRKNVVPIESPPTDEEDHLEIS 1335

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV----KKTRWW 719
             +   E  D        +       +   S    S P  +              KK+   
Sbjct: 1336 EEQDSENIDQKRKGRGSSKKTPQKSDSTDSALDTSRPTPQKRRGRPPKTPTVQQKKSHVG 1395

Query: 720  KRRK 723
            + RK
Sbjct: 1396 RPRK 1399


>gi|195494091|ref|XP_002094690.1| GE21967 [Drosophila yakuba]
 gi|194180791|gb|EDW94402.1| GE21967 [Drosophila yakuba]
          Length = 348

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 43/190 (22%), Gaps = 13/190 (6%)

Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
             S+    L +++   + E   +    +             + EK               
Sbjct: 75  VPSEPADVLEDEQNTPLYEILQKQMEQVLASSAPNDPVYEQHREKQERRDQKPPHQPPYF 134

Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG----------VIRKRR 632
           S        ++     +D+     P      D       +E  G             ++ 
Sbjct: 135 SGGDRDGELQDDYEDEEDQTDQGYPADPEKPDAVSGAPDDEDPGYQAPSLSLPSSNTRKP 194

Query: 633 RRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            RRR     +P T           ++       + +     +  T       G H  T  
Sbjct: 195 YRRRSTTTFQPRTTRTRTSAQPRTTARPLNQTSTTEQSSTVTTTTPRPKSSAGTHSKTTP 254

Query: 690 YDVSIPPVST 699
              +  P   
Sbjct: 255 QPGNSTPSDP 264


>gi|75676201|ref|YP_318622.1| hypothetical protein Nwi_2011 [Nitrobacter winogradskyi Nb-255]
 gi|74421071|gb|ABA05270.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 425

 Score = 42.3 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 35/160 (21%), Gaps = 16/160 (10%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           + I  G+  Q       K           +      +       P         +    +
Sbjct: 82  YLISNGATDQRRRVEPPKSHPGDLRTEPRQTERQGRKPLPQATQP--------PEAAAPQ 133

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDA--------GVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                 R RR    +R+P     +            S   +         +         
Sbjct: 134 NEAQGSRDRRTPANKRKPGKQSPEEAAKAGAAGQGASPSDAAAKPETAKTEPSGATPPKE 193

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           N  + E  A G T     S    +  +     ++ D   K
Sbjct: 194 NEAVKEEAAQGKTAKGAASNAGPAKEDAAEDKAAKDEAPK 233


>gi|225439645|ref|XP_002269679.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 858

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       K   + +     + +  + ++   L   K E+ +D       E+ + 
Sbjct: 261 RRKAEEKRQARLEKELLEEEERKQREEVARLVEERRRLRDEKMEAEKDRGKPPFREKDSK 320

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +++R+ RR+       D G     S  + +   +        ++   + ++   H  
Sbjct: 321 KEAEKKRQERRK-----ERDKGSSKSNSDAEEMERKAGKESERKRELDRKSEIDRREHQK 375

Query: 687 TENYDV 692
           T     
Sbjct: 376 TGTEIS 381


>gi|325118333|emb|CBZ53884.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 2941

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/120 (8%), Positives = 27/120 (22%), Gaps = 8/120 (6%)

Query: 611  SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
            + +        + +    +++      R     H +     + S  +       +     
Sbjct: 1561 ATKRGTPGKREDSAPEAGKRKNHPENSRERFGRHGETEAEREDSESEGKKTPGGEETAGR 1620

Query: 671  SDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT-------RWWKRR 722
            ++  +       A    +                +     DP  +K         WW  R
Sbjct: 1621 NERQDAKRTPGTAEAAFSSFSASPKERKGRKGANTEQHKVDPPRRKPENLSVAESWWDER 1680


>gi|316973156|gb|EFV56779.1| RNA polymerase-associated protein CTR9-like protein [Trichinella
            spiralis]
          Length = 1189

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 565  IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            IE+   +   + T  +           +  E    D++ L   +       +        
Sbjct: 908  IERTKKLLI-MPTFEEEKPKRAPKGRKRKDEEFVNDDSDLGDWEPGRQSLPKKRKPKALP 966

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD-SFDMYMEPSDITNHNLLENGA 683
                 ++  +RR R   TD       ++VS  +N  +  S     + + I +  +L + +
Sbjct: 967  KERRGRQNEKRRLRTATTDSEAEASTANVSKPKNRREALSDLNAKQKAKIKSREILSSTS 1026

Query: 684  HGFTENYDVSIPPVS---TPEMESSNSSSDPIVKKT 716
                   D    P +   TPE    + S+  + K+ 
Sbjct: 1027 SSGDSAKDAMERPSTYLGTPEQSDVSQSNIVVKKED 1062


>gi|311266603|ref|XP_003131160.1| PREDICTED: m-phase phosphoprotein 8-like isoform 2 [Sus scrofa]
          Length = 864

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/162 (8%), Positives = 39/162 (24%), Gaps = 5/162 (3%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
               E +      EK             +         D  +    +D       K    
Sbjct: 278 EADSEDSQPEHREEKQMKGARDKAEPDALPEAGFEQQQDGALSADEEDARAKRKKKRPRK 337

Query: 613 EDIQDNIVSEEST---GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
            +      + E+       +  ++++R +       +A  ++  S        S      
Sbjct: 338 TEEPKESRTPENKSPLSEKKPVQKKQRNQDRGRSGAEAEKLAPASPP--AQSGSRPGADS 395

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
           P +++      +G    T+  +         +++        
Sbjct: 396 PEEVSAGQGGGSGPEKETQKNEPKEKYQKRQDLDKDEKGRRE 437


>gi|195573522|ref|XP_002104741.1| GD18284 [Drosophila simulans]
 gi|194200668|gb|EDX14244.1| GD18284 [Drosophila simulans]
          Length = 647

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 43/174 (24%), Gaps = 17/174 (9%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +               S  +  +   +     +D    P  +  S  D        +   
Sbjct: 215 RNDKHSPARKRRDSDQSPPRKRTGKASPTRRRRDADQSPPRRRRSNSDQSPPRRRRDKDS 274

Query: 627 VIRKRRR-------RRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
              +RRR       RRR+       RR   D   +       S Q+ +    D    P  
Sbjct: 275 TPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRGSDQSPVRRRRDSDQSPPR 334

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTRWWKRRK 723
               +           +      P      P     +    P  K+ +  +RR+
Sbjct: 335 RRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPNKKRDKSPRRRR 388



 Score = 41.9 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 38/153 (24%), Gaps = 1/153 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       +  SD   P   K  +            +S   +    +        
Sbjct: 267 RRRRDKDSTPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRGSDQSPVRRRR 326

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   RRRR    T              +   +D      +     + N   + +   
Sbjct: 327 DSDQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPNKKRDKSPRR 386

Query: 687 TENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             + D S P       +S    +     +K+RW
Sbjct: 387 RRDSDQSPPRNQRSRDQSPPPRNRFREERKSRW 419



 Score = 40.7 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 47/218 (21%), Gaps = 3/218 (1%)

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR--FGVSINVVIGIELADKLFYI 565
               ++         +     + +  +      E   R    V +              I
Sbjct: 88  RNIAVKDEIKEEHEESSPAPGIRIKQEPLDEEQEMWGRKATVVKVKDEFSPSRRKSPVRI 147

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++     +   +  +    ++     +            P  +    +         +S 
Sbjct: 148 KQEKRSSSRDLSPARSRKPAKREECPQRGRRRAASSDQSPPRRGRDGDQSPPRRKRRDSD 207

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                R+ R  +  PA    D+                     + S         + +  
Sbjct: 208 -QSPPRKARNDKHSPARKRRDSDQSPPRKRTGKASPTRRRRDADQSPPRRRRSNSDQSPP 266

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  S PP    + + S         ++   + RK
Sbjct: 267 RRRRDKDSTPPRRRRDSDQSPPRRRKADDQSPVRRERK 304


>gi|149411344|ref|XP_001509835.1| PREDICTED: similar to interleukin 13 receptor alpha 1-binding
           protein-1 isoform 2 [Ornithorhynchus anatinus]
          Length = 711

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 34/154 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                           ++     +  E     +      + +  E   ++   +E     
Sbjct: 211 HKDHEWEKLKEGEKDRNKNRISKQEKETEKSKDKERGKKEDKEREKDSEHDKEKEKKSSG 270

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + R R+R +                          +   E       +           
Sbjct: 271 GRERDRQREKDKDKGKEREKDKRKERLRDGERSKEKERNKEQDKAEKKSTGSEETPSTKV 330

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +          P+ E+ NS+       T+  +RR
Sbjct: 331 SAGPVKEAKPYPDKEAENSTKTARSVVTKVSRRR 364


>gi|127511879|ref|YP_001093076.1| band 7 protein [Shewanella loihica PV-4]
 gi|126637174|gb|ABO22817.1| band 7 protein [Shewanella loihica PV-4]
          Length = 595

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/181 (9%), Positives = 44/181 (24%), Gaps = 1/181 (0%)

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           ++ +KR    + E    + I     +E   +   IEK      LV         ++  + 
Sbjct: 217 IIEEKRKETNDIEQENRIKIE-QRNLEAEKESLEIEKAEEEARLVQQQALEFKRAEQKAE 275

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
               +     E        E   +      +++      ++R+   + R           
Sbjct: 276 ILKKQEQKSREEREAEIAKERAVETAQIEKTKDIETREIEKRKAIEQSRIQQQRDIEVAE 335

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
            D         +        +       +E      T             E+  +   ++
Sbjct: 336 QDKQIAVAQKSEEESAARAKAAEAEKLKVEKEEAVITVRQVAEANRRKEIEVIDARKEAE 395

Query: 711 P 711
            
Sbjct: 396 R 396


>gi|152987584|ref|YP_001347332.1| hypothetical protein PSPA7_1951 [Pseudomonas aeruginosa PA7]
 gi|150962742|gb|ABR84767.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 386

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/118 (8%), Positives = 17/118 (14%)

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                +    +  +       S      R+R  RR                   Q   + 
Sbjct: 265 TTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDGDNAGRRTPASRSSRGPQPGAER 324

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                  P                  +   +  P   P          P         
Sbjct: 325 KGREQGTPVAERPRESNRKPRPSKPRDERPAGAPGDKPAARKPQVKRRPKPAGDGMRP 382


>gi|126328923|ref|XP_001366152.1| PREDICTED: similar to SPEN homolog, transcriptional regulator isoform
            2 [Monodelphis domestica]
          Length = 3597

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 4/178 (2%)

Query: 540  VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
             E EA       V   +E       +         V       SD    ++  + +    
Sbjct: 2301 AESEAEMATEPLVQAEMEPETDQ-AVSGILETDNAVEPSVPPASDPAPSAHPGDPKDPEG 2359

Query: 600  DEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQN 658
            +  + P    E    +Q+  VS +     +  R RR+R      D  +A  +    +   
Sbjct: 2360 NTTVSPSSAQEPEVVLQETEVSRKDRVRQKSTRSRRKRSTSKKGDAVEANALESEQAPNK 2419

Query: 659  VIDDSFDMYMEPSDITNHNLLENGAHGFTE--NYDVSIPPVSTPEMESSNSSSDPIVK 714
                S      P         +N     +E    D S  P +        +  DP  K
Sbjct: 2420 CPVTSELKLKPPETPKEDKQNKNSHPVSSEPNPTDSSKNPANETITIELVAEEDPPAK 2477


>gi|17986031|ref|NP_523441.1| kismet, isoform A [Drosophila melanogaster]
 gi|7230509|gb|AAF43004.1|AF215703_1 KISMET-L long isoform [Drosophila melanogaster]
 gi|22945599|gb|AAF51527.3| kismet, isoform A [Drosophila melanogaster]
          Length = 5322

 Score = 42.3 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%)

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
             G     D    S         + EA       +S+ D   +  S  S    ++   R R
Sbjct: 1399 DGESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1458

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            R   + +   A       S + +        + P      + L+        +       
Sbjct: 1459 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEM 1515

Query: 697  VSTPEMESSNSSSDP 711
             S     S N+    
Sbjct: 1516 DSNKRRSSRNTQRKK 1530



 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 44/174 (25%), Gaps = 16/174 (9%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I +GS              DS   S         + +      +S   
Sbjct: 1401 ESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1460

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             + ++   + ++ G +  +  ++RR R        G    +                   
Sbjct: 1461 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKR 1520

Query: 673  ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             ++ N                   +      +     P   +SNS++   V+KT
Sbjct: 1521 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKT 1574


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like [Pongo
            abelii]
          Length = 1532

 Score = 42.3 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 13/168 (7%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             F +           T  K   D  +     + +    +E  +P   S           S
Sbjct: 1308 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDEEDFVPSDASP-----PKTKTS 1362

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             + T    K ++       A D  D+  +S  SS              P    N  + + 
Sbjct: 1363 PKLTNKELKPQKSAVSDLEADDAKDSIPLS--SSPPATRFPDETEITNPVPKKNVTVKKT 1420

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723
             A   +          + P+    +       S  P   KT+  ++RK
Sbjct: 1421 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1468


>gi|198463597|ref|XP_002135540.1| GA28265 [Drosophila pseudoobscura pseudoobscura]
 gi|198151328|gb|EDY74167.1| GA28265 [Drosophila pseudoobscura pseudoobscura]
          Length = 329

 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 39/174 (22%), Gaps = 11/174 (6%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP---KSESLEDIQD 617
             +   K +                  P            +    +     SE    ++ 
Sbjct: 136 PHYSDVKHASDANQQWAPANPSGSDDVPPPLVAAHAGLPPQPPDEVVVDFDSEESLPLET 195

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
              + ++     +R  RR      T         + +  Q       +   E  +     
Sbjct: 196 KPTNNDAAAAKERRGIRREPNPTTTTQQRPKRDEEYAENQTQQQRRSNGQRETRNTPGTK 255

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESS--------NSSSDPIVKKTRWWKRRK 723
              N A    E   +   P      +           +++D    K R   RR+
Sbjct: 256 PNNNDAAAAKERRGIRREPNPPTTTQQRPKRDEEYVENNNDAATAKERRGIRRE 309


>gi|156555550|ref|XP_001604032.1| PREDICTED: similar to jumonji domain containing 1B [Nasonia
            vitripennis]
          Length = 1971

 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 32/141 (22%)

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
             S     +    ++             + S    +D+  SE       KR+  + +R+  
Sbjct: 863  KSKVSIKARKTPVKESVNGHTAAAAATANSESLHEDSSNSEPERKAPPKRKAPKVKRKKG 922

Query: 642  TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                    V +    +                                       V T E
Sbjct: 923  AAWKQQTAVQEQRRRKKQKQGRGSAAAGSESSNESEPGSLSDSSEQRLSINDRAVVPTLE 982

Query: 702  MESSNSSSDPIVKKTRWWKRR 722
                + + +  V K R  K R
Sbjct: 983  TFKGSGNGNKKVPKKRGRKPR 1003


>gi|154279422|ref|XP_001540524.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412467|gb|EDN07854.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 390

 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 46/179 (25%), Gaps = 14/179 (7%)

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
            ++       +    E+             +   +   +     +   +       P+SE
Sbjct: 74  QIIKREAAKQEELATEQEEKPTPRGPKRAPLKPQAPKRASISVSQPARKRRRTATPPESE 133

Query: 611 SLEDIQDNIVSEESTGVIRKRRRR--------------RRRRRPATDHHDAGVVSDVSSI 656
                  +  SEE  G   K R+R               + +   +    +  +SDV  +
Sbjct: 134 EELSSPPSEGSEEEKGKAPKSRKRAHPENKASKPVKQTPKPKPAPSKADTSSELSDVIDV 193

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              + +   +              + +           PP  T   +SS S      KK
Sbjct: 194 SENLSERTSLKGATQKDEPSETKHDESESEMSVVIDDEPPPKTKRRKSSESLKQGKTKK 252


>gi|118096907|ref|XP_001233428.1| PREDICTED: similar to Setd5 protein [Gallus gallus]
          Length = 1446

 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 3/161 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE--- 622
           E  S     V  G    SD++    ++  E   ++        + S    +D  V     
Sbjct: 481 ENISQQTEEVPEGPAAVSDNEVADKEEKQEEEKEESVDEQGTLAHSRRSREDRKVEAIMH 540

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
               + +++RRR +     +   +  + S+   ++ V  ++ +     S ++        
Sbjct: 541 MFENLEKRKRRREQPSDRNSTDAEVSINSEAPELEEVKTETPETEDASSTLSATAASNVS 600

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +   +          +     +     K +R   + +
Sbjct: 601 NSNISTGVNTRRSSQVADAVPEKTVTKPAPAKPSRPRPKSR 641


>gi|221330583|ref|NP_001137761.1| kismet, isoform C [Drosophila melanogaster]
 gi|220901895|gb|ACL82968.1| kismet, isoform C [Drosophila melanogaster]
          Length = 5517

 Score = 42.3 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%)

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
             G     D    S         + EA       +S+ D   +  S  S    ++   R R
Sbjct: 1399 DGESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1458

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            R   + +   A       S + +        + P      + L+        +       
Sbjct: 1459 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEM 1515

Query: 697  VSTPEMESSNSSSDP 711
             S     S N+    
Sbjct: 1516 DSNKRRSSRNTQRKK 1530



 Score = 41.5 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 44/174 (25%), Gaps = 16/174 (9%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I +GS              DS   S         + +      +S   
Sbjct: 1401 ESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1460

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             + ++   + ++ G +  +  ++RR R        G    +                   
Sbjct: 1461 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKR 1520

Query: 673  ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             ++ N                   +      +     P   +SNS++   V+KT
Sbjct: 1521 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKT 1574


>gi|85080381|ref|XP_956534.1| hypothetical protein NCU01623 [Neurospora crassa OR74A]
 gi|7800965|emb|CAB91363.1| related to neurofilament-H protein [Neurospora crassa]
 gi|28917601|gb|EAA27298.1| predicted protein [Neurospora crassa OR74A]
          Length = 837

 Score = 41.9 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +   +  +   +    +             E + + +        E+  +I  +   E 
Sbjct: 610 AVSNTNTRKRKASAPIVINDSESDGDLSDPPEELLEADKEAENDPVEAEPEIPPSDEDEN 669

Query: 624 STGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
                   ++R R      A      G        + + + S     + S   +    E+
Sbjct: 670 GDEEEELPRKRGRPVATATAAVAPTKGKRGRPPKNKVLQEVSASSARKNSRSKSKRQAES 729

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +    ++ D  +      + E+   +     K  R
Sbjct: 730 DSDDQYQDQDQDLKKDPEEQEEAGAVTEKGSNKDDR 765


>gi|188584474|ref|YP_001927919.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
 gi|179347972|gb|ACB83384.1| OmpA/MotB domain protein [Methylobacterium populi BJ001]
          Length = 718

 Score = 41.9 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 32/152 (21%), Gaps = 16/152 (10%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +       +     + P   +  +     E   P  +    E        +      R+ 
Sbjct: 70  ERGGPPARERPDRPERPERPEPRQAPAARERPDPAERPARPERPAPQERPDRQERPERQE 129

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           R  R+ R    +  +     +        + +      P                     
Sbjct: 130 RPDRQERPDRQERPERQERPERQERPERPERAPAPAQRPDRSEE---------------- 173

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              PP +        + +     +     RR+
Sbjct: 174 RPTPPAARERTPDREAPARRETPEREAPARRE 205


>gi|47213693|emb|CAF94586.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1032

 Score = 41.9 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 28/143 (19%), Gaps = 2/143 (1%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
            G +   DS      K       +         +  ++       ++       R    R
Sbjct: 110 EGARYTYDSTGRRDRKQDVVEKHERVKDKERHRDKEKERDARKEEKDKERRRHHRAESER 169

Query: 637 RRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
           RR+  +                 +    + +     SD         G      N +   
Sbjct: 170 RRQEESGEGGFKKQERDKREKHGDRERHTDEYRERKSDRERRERHSEGREDKGHNEEHRR 229

Query: 695 PPVSTPEMESSNSSSDPIVKKTR 717
                              ++ R
Sbjct: 230 QREEKERRREDRDQQQEKRRRDR 252



 Score = 39.2 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 33/151 (21%), Gaps = 12/151 (7%)

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
            ++    +        +      +S   +   D        G   +R  + RR       
Sbjct: 11  GESTERRRRELEKESKKERDKQRESTREKKEDDRYAERRKEGSRDRRGDKERREETNKRE 70

Query: 645 HDA--GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL----------ENGAHGFTENYDV 692
            D   G   +    +   D   D+                         G     ++   
Sbjct: 71  QDRFGGADRNSHDSRERRDRRNDIEKREERDRRERDRALEGARYTYDSTGRRDRKQDVVE 130

Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               V   E            K+ +  +RR+
Sbjct: 131 KHERVKDKERHRDKEKERDARKEEKDKERRR 161



 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 42/163 (25%), Gaps = 8/163 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-----SLEDIQDNIV 620
           E+    +   +   +  +  +    ++      + E        E        D ++   
Sbjct: 133 ERVKDKERHRDKEKERDARKEEKDKERRRHHRAESERRRQEESGEGGFKKQERDKREKHG 192

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             E      + R+  R RR   + H  G      + ++                      
Sbjct: 193 DRERHTDEYRERKSDRERR---ERHSEGREDKGHNEEHRRQREEKERRREDRDQQQEKRR 249

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +E  + +   V     +   S  D   +K R  + ++
Sbjct: 250 RDRDVASEEREGASDKVRHHRGDKERSERDRHREKGRHGREKE 292



 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 40/163 (24%), Gaps = 11/163 (6%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +             +   Y +  +   +D       + E+ +  QD     +      + 
Sbjct: 27  KERDKQRESTREKKEDDRYAERRKEGSRDRRGDKERREETNKREQDRFGGADRNSHDSRE 86

Query: 632 RRRRRRRRPATDHHDAGVVS----------DVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           RR RR      +  D               D +  ++   D  + +    D   H   E 
Sbjct: 87  RRDRRNDIEKREERDRRERDRALEGARYTYDSTGRRDRKQDVVEKHERVKDKERHRDKEK 146

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRWWKRRK 723
                 E  D         E E            K +   +R+
Sbjct: 147 ERDARKEEKDKERRRHHRAESERRRQEESGEGGFKKQERDKRE 189


>gi|268555196|ref|XP_002635586.1| Hypothetical protein CBG20574 [Caenorhabditis briggsae]
 gi|187023296|emb|CAP37559.1| hypothetical protein CBG_20574 [Caenorhabditis briggsae AF16]
          Length = 169

 Score = 41.9 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 25/134 (18%), Gaps = 1/134 (0%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                            S       N E           P S        +  + +    
Sbjct: 4   SRTRTRKPGNPEARKPGSPEARKPGNPEARKPGSPEARKPGSPEARK-PGSPEARKPGSP 62

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             ++      R+P +         +          +          +             
Sbjct: 63  EARKPGNPEARKPGSPEAQKPGSPEARKPGRPEARNPGSPETRKPGSPEARKPGSPEARK 122

Query: 688 ENYDVSIPPVSTPE 701
                ++PP+ +PE
Sbjct: 123 PGSPEALPPLESPE 136


>gi|85091486|ref|XP_958925.1| hypothetical protein NCU09346 [Neurospora crassa OR74A]
 gi|28920317|gb|EAA29689.1| hypothetical protein NCU09346 [Neurospora crassa OR74A]
          Length = 2295

 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/211 (7%), Positives = 52/211 (24%), Gaps = 15/211 (7%)

Query: 497  SSVALSILRSVEEYLLQYTAHNIIVHTHSDV---VLYLLNQKRATIVEYEARFGVSINVV 553
               A    R ++E   +  A  I +            +   +   + E EA+        
Sbjct: 1623 EWYAKEEQRKLKEAAQKEEARRIALEAKQKAELEAKQMAELEAIRLAEMEAKRKAE---- 1678

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                   +    E+            +    ++             ++      +  +  
Sbjct: 1679 -------EERKAEQNRKAAEAKRKAEEAKKAAEEVKKKAEEARRQAEQEARHKKEEAATR 1731

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-DAGVVSDVSSIQNVIDDSFDMYMEPSD 672
              ++     E+  +  ++R+    R+       +    ++V  +      + +   +   
Sbjct: 1732 KAEEKKRQAEAKRLAEEKRKAEAARQAEEQQQAELKRQAEVERLAEKKRKADEAARQAEA 1791

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              +  L            + +    +  + E
Sbjct: 1792 ELHAELQRQADEAERRAKEAAQKARAALQAE 1822


>gi|299745769|ref|XP_001841446.2| hypothetical protein CC1G_13146 [Coprinopsis cinerea okayama7#130]
 gi|298406743|gb|EAU80366.2| hypothetical protein CC1G_13146 [Coprinopsis cinerea okayama7#130]
          Length = 843

 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 2/158 (1%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           IE+ +P Q      ++             +E    ++        + +   +        
Sbjct: 688 IEQETPPQRPPEDRYQGRRTRSRSQAQDALEEGASEDDSDQPSSFQGIRTRRQRREDAHP 747

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                + R  R R+  A   +   V         +   S          T      +   
Sbjct: 748 KSTDERSRTTRNRQTAANPENAKPVGKRKDYPVPL--TSPSKRPRVEASTQSKSSSHKKT 805

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             T   +   P     +  ++N   + +  K R   RR
Sbjct: 806 SQTSKREAPPPRTPKRQKPAANGRKEAVTPKKRVAGRR 843


>gi|8163678|gb|AAF73797.1|AF154028_1 surface protein PspC [Streptococcus pneumoniae]
          Length = 730

 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           ++      +           +       V +       L N K     + E         
Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
            +   +   +   E+  P            +       D         E  LP P  +  
Sbjct: 243 KLKESVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           + + +            K ++   RR   T+ +    +    S   V +   ++  E + 
Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + +    N A    E+       +   + +          KK     +RK
Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404


>gi|195436658|ref|XP_002066274.1| GK18181 [Drosophila willistoni]
 gi|194162359|gb|EDW77260.1| GK18181 [Drosophila willistoni]
          Length = 5689

 Score = 41.9 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 6/139 (4%)

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
             G     D    S           +A +     +S+ D   +  +   +   RKR   R 
Sbjct: 1517 EGESPDYDDIPVSKIPRSSNEDDKDAEVGDETVDSVPDSAGDAGASTPSRRDRKRSNTRS 1576

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            RR   ++   +   +  S    +   +         I   +  E+     T         
Sbjct: 1577 RRNATSEEGGSSRRNRGS----LSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPP-- 1630

Query: 697  VSTPEMESSNSSSDPIVKK 715
             S  +     SS +   KK
Sbjct: 1631 DSELDSNKRRSSRNTQRKK 1649


>gi|322705531|gb|EFY97116.1| transcriptional regulator Cti6 [Metarhizium anisopliae ARSEF 23]
          Length = 734

 Score = 41.9 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/151 (8%), Positives = 37/151 (24%), Gaps = 3/151 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G       N    +     +      +    +    +         +      + +   
Sbjct: 439 RGRSDSEDNNNNTSIKRQRTSSRSPSPLAEKQEPVDEVVSGDETETRNGAKKSKNNQQPR 498

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              ++  R R+R+ A +                 D S +M +  +        E+ +   
Sbjct: 499 EKPEKEDRERQRQEAANKRKGRAER---RRAEDSDLSEEMPLAAAKAVPQKPAESPSKEE 555

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           + +   +          +S+S         R
Sbjct: 556 SPSVAQAPGTPPPTHPTASSSHKRGARANKR 586


>gi|301755542|ref|XP_002913621.1| PREDICTED: probable RNA-binding protein 20-like [Ailuropoda
           melanoleuca]
          Length = 1202

 Score = 41.9 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 2/137 (1%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
             +     +  ++                +S+ P  + + +    +  +   P+S   + 
Sbjct: 736 EPKGKSDKYIKQQQDAPGRSRRKEEARMRESRHPHPEDSGKEDGLEPKVTSAPESTKSKQ 795

Query: 615 IQDN--IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            + N     +    V   RR RR     A       +    SS      ++     E + 
Sbjct: 796 SEKNRTKRPDRDQEVADNRRERRMAGNEAGREGQERMEESTSSPARQEKETVSSDAEDAR 855

Query: 673 ITNHNLLENGAHGFTEN 689
                  E+G+    E+
Sbjct: 856 TKKEQEWESGSEAEGES 872


>gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
 gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
          Length = 712

 Score = 41.9 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 11/103 (10%)

Query: 40  GNIYLAKVTRVEPSLQ-AAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98
           G++Y  KV R+   +   AFV+    + G L          QI     + +  E  +   
Sbjct: 620 GDVYTGKVVRI---MNFGAFVEIAIGKEGLLHIS-------QIDHHRVEKVEDELKVGDE 669

Query: 99  DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141
               V +    G + +     LE+            +      
Sbjct: 670 VKVKVTEIDRQGRINLSRKALLEKPEAWPVDESPYRKNDKKEK 712


>gi|47212262|emb|CAF96458.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 968

 Score = 41.9 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 12/144 (8%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
                   P+         +D+            D  ++  S  ++ V  +RR+ + R  
Sbjct: 371 PDARRQTEPAGPAVPPEGEEDQPAGQKDVEAEDADGTEDERSPPASEVTAQRRKEKDRNE 430

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
             T    +         +              D       ++                  
Sbjct: 431 EKTKPGRSKKREKREKGKREAGPGSSSTASGHDRKRRKEGKSRKEK------------DR 478

Query: 700 PEMESSNSSSDPIVKKTRWWKRRK 723
             +   N  S     K+R  K+R+
Sbjct: 479 RILGDLNLQSKERTDKSRHKKKRE 502


>gi|126328921|ref|XP_001366092.1| PREDICTED: similar to SPEN homolog, transcriptional regulator isoform
            1 [Monodelphis domestica]
          Length = 3564

 Score = 41.9 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 4/178 (2%)

Query: 540  VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
             E EA       V   +E       +         V       SD    ++  + +    
Sbjct: 2278 AESEAEMATEPLVQAEMEPETDQ-AVSGILETDNAVEPSVPPASDPAPSAHPGDPKDPEG 2336

Query: 600  DEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQN 658
            +  + P    E    +Q+  VS +     +  R RR+R      D  +A  +    +   
Sbjct: 2337 NTTVSPSSAQEPEVVLQETEVSRKDRVRQKSTRSRRKRSTSKKGDAVEANALESEQAPNK 2396

Query: 659  VIDDSFDMYMEPSDITNHNLLENGAHGFTE--NYDVSIPPVSTPEMESSNSSSDPIVK 714
                S      P         +N     +E    D S  P +        +  DP  K
Sbjct: 2397 CPVTSELKLKPPETPKEDKQNKNSHPVSSEPNPTDSSKNPANETITIELVAEEDPPAK 2454


>gi|83616161|gb|ABC25605.1| anonymous antigen-2 [Babesia bovis]
          Length = 718

 Score = 41.9 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 7/142 (4%), Positives = 36/142 (25%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           +  ++ +A   ++  +    +            ++ +     +E+    +++     R+R
Sbjct: 188 EFKAEQEALEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKR 247

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
              +          +  +   +   +   +          E          +        
Sbjct: 248 QEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQ 307

Query: 700 PEMESSNSSSDPIVKKTRWWKR 721
            E E+     +    + +  + 
Sbjct: 308 EEAEAERKRQEEAEAERKRQEE 329



 Score = 41.5 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 7/150 (4%), Positives = 34/150 (22%), Gaps = 1/150 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                  +     Q    ++  +    +            ++ +     +E+    +++ 
Sbjct: 190 KAEQEALEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQE 249

Query: 633 RR-RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
               R+R+   +          +  +   +   +   +          E          +
Sbjct: 250 AEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEE 309

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                    E E+     +    + +  + 
Sbjct: 310 AEAERKRQEEAEAERKRQEEAEAERKRQEE 339



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 33/150 (22%), Gaps = 1/150 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +  P        +K  S+     +    E +  +            ++ +     +E+  
Sbjct: 166 RYRPECDGEYIQYKNCSEKNWVEFKAEQEALEAERKRQEAEAERKRQEAEAERKRQEAEA 225

Query: 627 VIRKRRRR-RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             +++     R+R+ A               Q   +       E                
Sbjct: 226 ERKRQEAEAERKRQEAEAERKRQEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERK 285

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             E  +         E E          +K
Sbjct: 286 RQEEAEAERKRQEEAEAERKRQEEAEAERK 315



 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 56/231 (24%), Gaps = 4/231 (1%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           R +   A +  +  EE   +                    +KR    E E +        
Sbjct: 264 RKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAE 323

Query: 554 IGIELADKLFYIEKGSPVQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                  +    E+    +        +     +    +   E   Q+EA     + E  
Sbjct: 324 ---RKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEA 380

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           E  +      E+    ++     R+R+   +          +  +   ++      E   
Sbjct: 381 EAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEEEARQAAERKR 440

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  E           ++         +    + + + K+     +R+
Sbjct: 441 QEEERQKEERLAKEALQKRLAEEAAQKRLEQMRRQAEEKLRKEKEAEMKRQ 491


>gi|123471476|ref|XP_001318937.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121901709|gb|EAY06714.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3]
          Length = 1193

 Score = 41.9 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 52/173 (30%), Gaps = 7/173 (4%)

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
            ++   +     F +++                + +    ++    V +    +P    +
Sbjct: 752 VLISPSKKKTNEFSLDQIQSSPKKKKKQEPDNQEQEQKKRERKKPKVEKQIDEIPKKTKK 811

Query: 611 SL--EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
               E+  D+        VI++ R+++ RR          + +++  I+N    S     
Sbjct: 812 QKKLEEEYDDEADINEQEVIQQPRKKKNRRIKPETEEKLQINTEIYKIRNKTAPSSPTKQ 871

Query: 669 EPSDITNHNLLE----NGAHGFTENYDVSIPPVSTPEMESSNSS-SDPIVKKT 716
            P  +   N               N      P S    +   SS ++P   K+
Sbjct: 872 RPQQLVIENTNNMQYFEVKEENPRNEYKLRSPTSQRIKKQRRSSYNEPNNHKS 924


>gi|118086455|ref|XP_001232309.1| PREDICTED: serine/threonine-protein kinase PRP4K [Gallus gallus]
          Length = 1005

 Score = 41.9 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 37/157 (23%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++    ++ +        + ++ S   +              KS  + + +      +S 
Sbjct: 233 DQTRKSRSPMLKRRSQEKNRKSKSPPDDRNKADDKSKSRDRRKSPVVNESKSRDRGRKSK 292

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                R + + RR  + D       +D                + +              
Sbjct: 293 SPAELRSKSKDRRSRSKDRKSRRSETDKDKKPIKSPSKDASSGKENRSPRRPGRSPKGRS 352

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +           +P      S       +TR   RR
Sbjct: 353 LSPKPREKSRRSRSPLFNDRRSKQSKSPSRTRSPARR 389


>gi|114645175|ref|XP_001165059.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 5 [Pan troglodytes]
          Length = 1380

 Score = 41.9 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900

Query: 720 KRRK 723
            R +
Sbjct: 901 SRER 904


>gi|85092606|ref|XP_959478.1| hypothetical protein NCU02315 [Neurospora crassa OR74A]
 gi|28920910|gb|EAA30242.1| predicted protein [Neurospora crassa OR74A]
          Length = 1390

 Score = 41.9 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 40/159 (25%), Gaps = 3/159 (1%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A      E+                  ++    + ++  + +   +    +         
Sbjct: 496 AQPDVEPERVEQPGEATPAPTSTAKTPRSKGSKRKVKVPYFEREEVEARDNAETSAEPSV 555

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                +    ++ ++R+ R   A D      V        V           S+  N  +
Sbjct: 556 KEVSATQKDQKREKKRKAR---AEDEQSTSNVEPAPKKAKVSTKKKPAKKADSEEDNSEV 612

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            E G +    N    + P     +++   S       T+
Sbjct: 613 EEAGDNSNKANLQGRVTPAEHARIKAVIDSFRDAQGLTK 651


>gi|327307298|ref|XP_003238340.1| hypothetical protein TERG_00330 [Trichophyton rubrum CBS 118892]
 gi|326458596|gb|EGD84049.1| hypothetical protein TERG_00330 [Trichophyton rubrum CBS 118892]
          Length = 995

 Score = 41.9 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 37/176 (21%), Gaps = 6/176 (3%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP--IPKSE 610
                        E+      ++         +         E   Q            E
Sbjct: 544 EREALFETPEQEQERVREADKMLEKSGLEEPPAHLEESRPEEEGSKQRFPSKDVWEEAPE 603

Query: 611 SLEDIQDNIVSEESTGVIRKRR----RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
           S +         +S    +  +        R     D        D+S  +       ++
Sbjct: 604 SQQLTAAVEAPADSEKSEKPEKPSLPSLPPRPSRQPDRSSTEEQRDISPTKTQATSPTEL 663

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              PS                +  +   P   T   E+ ++++ P  K       R
Sbjct: 664 KKRPSVPDRPKPQVPQRPTRKKGQESGEPLSKTISGENPDNAAPPAPKSKPALPPR 719


>gi|242800420|ref|XP_002483584.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218716929|gb|EED16350.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 678

 Score = 41.9 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/159 (7%), Positives = 37/159 (23%), Gaps = 8/159 (5%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
              +        +     + + E V +DEA          +        ++      ++ 
Sbjct: 253 RARSRRGAENQPAAEAEPEIDREAVQEDEAPEASTAKSGRKRKNQPENGQDKGKEPTQQA 312

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY--------MEPSDITNHNLLENGAH 684
            R RR+R      D     + ++ Q   +                         ++    
Sbjct: 313 PRGRRKRTRPPIEDEAEDREDTAPQPRKERKGKNREVEAVAEMPGEETQERAEEIQKSKE 372

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +     P +   +     + +    +       ++
Sbjct: 373 NGESSRRRGRPSLDKEQDSQPEAETTTTTRPEPDQAPKR 411


>gi|118400498|ref|XP_001032571.1| hypothetical protein TTHERM_00584640 [Tetrahymena thermophila]
 gi|89286914|gb|EAR84908.1| hypothetical protein TTHERM_00584640 [Tetrahymena thermophila
           SB210]
          Length = 686

 Score = 41.9 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 5/172 (2%)

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
            L+      +K    Q  +    +  S     + D +       E+     + +   +  
Sbjct: 360 SLSQPQSATQKKKNQQKRILRKKRNNSKKVQDNDDSDFIKSDDSESQSEEDQEDQSSEQS 419

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           +N   E S     KRR  RR++    D  +     + S  +N  DDS +           
Sbjct: 420 ENSDQENSLPQKTKRRILRRKKSVVNDDSEQEDQEEGSFNKNGQDDSGEKQKNKRGRRLL 479

Query: 677 NLLENGAHGFTENYDVSIPPVS-----TPEMESSNSSSDPIVKKTRWWKRRK 723
              +    G  +N   S            E  + +SS +  +K  R   + K
Sbjct: 480 QKNKLTKVGKNKNTVESDEEQEFNNPIKKEKNNEDSSENDGIKIARKQPKAK 531


>gi|302900054|ref|XP_003048185.1| hypothetical protein NECHADRAFT_93333 [Nectria haematococca mpVI
           77-13-4]
 gi|256729117|gb|EEU42472.1| hypothetical protein NECHADRAFT_93333 [Nectria haematococca mpVI
           77-13-4]
          Length = 571

 Score = 41.9 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 1/146 (0%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             V       +    P      E   Q     P  K+ + E    +          +K+R
Sbjct: 360 EPVVDEVPEPTRVDQPKLPAVEETRAQSLRGRPKKKAAAEEAQPVDQPEATPVTKPKKKR 419

Query: 633 RRRRRR-RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            R R+  +PAT+  +A    +  S+ N +  +       + +   + +E       +  +
Sbjct: 420 GRPRKAGQPATETKEASPQVEQLSVGNAVPSAKVTKRSKAKLETQHQVEEVKIDDEQEEE 479

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
                 S  +      S   ++ KT 
Sbjct: 480 SKEAMDSRDDKAVLQESKPNVINKTG 505


>gi|260841489|ref|XP_002613946.1| hypothetical protein BRAFLDRAFT_67491 [Branchiostoma floridae]
 gi|229299336|gb|EEN69955.1| hypothetical protein BRAFLDRAFT_67491 [Branchiostoma floridae]
          Length = 4101

 Score = 41.9 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 28/204 (13%)

Query: 539  IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
            I +   R G  + V+           I K  P +     G      S         E   
Sbjct: 2238 IEKLRIRKGQRVEVIEEDPEDMPE-RIVKVEPPEKPERVGKSKRGRS-------RGEPKS 2289

Query: 599  QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
            + + L      E  + +   +   E +      +R R  R    D  D       S ++ 
Sbjct: 2290 ETKVLEATEAEEDYKPLAIKVEEPEISSYESPTKRTRLDRYRQNDISDVETKPKTSELET 2349

Query: 659  VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK---- 714
             +  + +      D+T  + LE      +             ++       +P VK    
Sbjct: 2350 RMKHTTEQDTPTKDLTKQDDLETAKGRPSVELKGWKSKAEKRDVVKEEPKLEPEVKPPSC 2409

Query: 715  ----------------KTRWWKRR 722
                            +T   +RR
Sbjct: 2410 EQKSPIAATIVSAPEVRTSTRERR 2433


>gi|158295214|ref|XP_316086.4| AGAP006038-PA [Anopheles gambiae str. PEST]
 gi|157015928|gb|EAA11204.4| AGAP006038-PA [Anopheles gambiae str. PEST]
          Length = 1366

 Score = 41.9 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 6/160 (3%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            +   + +P +          S ++    + + +     + +     S        +   
Sbjct: 703 DYSPARRNPERYSDILQRSSKSRTETNGKEDDRKSTKTTKPVSSRSGSPREPRRSSSPRG 762

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
           E++     K+    + RR +          D S+ +     S      PS          
Sbjct: 763 EKADSKTAKKDSAPKARRASVSPSPPPARRDRSASRTKSRRS------PSPKKRDTSRHE 816

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +    +      PP   PE  S+ S S     K+R    
Sbjct: 817 ASPVAKKREKPVAPPAEKPEKRSTTSPSSTRRVKSRSRSP 856



 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 8/133 (6%), Positives = 27/133 (20%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +        +             ++ +     +++ + P  +            +     
Sbjct: 792 RDRSASRTKSRRSPSPKKRDTSRHEASPVAKKREKPVAPPAEKPEKRSTTSPSSTRRVKS 851

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             R     +RRR+              S  ++           P    +       A   
Sbjct: 852 RSRSPPEVKRRRQEQASPAARSTTKPTSERESTETAKRSETRTPEKSESRKSRSKKASSS 911

Query: 687 TENYDVSIPPVST 699
           +     +    + 
Sbjct: 912 SGGAAAASSSSTN 924


>gi|321248711|ref|XP_003191213.1| nucleic acid binding protein [Cryptococcus gattii WM276]
 gi|317457680|gb|ADV19426.1| Nucleic acid binding protein, putative [Cryptococcus gattii WM276]
          Length = 2060

 Score = 41.9 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 29/127 (22%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +   V++  +   K     +            + E       +   +  +       ST 
Sbjct: 1687 REGSVESRASERSKRREQDRDRYRRDRDHRDREKERDRRDRSTAEDDKKRQEDSVPASTQ 1746

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                R  RR RR    +       S     ++  +   D      D       +      
Sbjct: 1747 SDAGRESRRSRRDGERERDKEEKKSRERDREDRKERGRDRSYRGEDSDRKRKRDEEPSSR 1806

Query: 687  TENYDVS 693
                + S
Sbjct: 1807 KLEPEAS 1813


>gi|158294343|ref|XP_315541.4| AGAP005541-PA [Anopheles gambiae str. PEST]
 gi|157015520|gb|EAA11214.5| AGAP005541-PA [Anopheles gambiae str. PEST]
          Length = 2535

 Score = 41.9 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 37/148 (25%), Gaps = 4/148 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +  +             Q    D+       DE L    ++E     +    S E+    
Sbjct: 511 ATPEKSPAATKPAKEKQQQKQPDRVDFSSDDDEPLSRTTRTEKRASDRAVRTSPEAGKTT 570

Query: 629 RKRRRRRRRRRPATDHHDAG----VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
           R  R R+       D               S+ +   D      E  ++      E    
Sbjct: 571 RSGRSRKSEPAATLDKDPDEMPDKKTRRSESVVSRRSDISSRKSEMREVLPKKAEEATKP 630

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPI 712
              +       PV+  +  +  S+ +  
Sbjct: 631 QPAQRGRKRKEPVAQTQQPAVKSTKEEE 658


>gi|254417164|ref|ZP_05030909.1| hypothetical protein MC7420_6589 [Microcoleus chthonoplastes PCC
           7420]
 gi|196175970|gb|EDX70989.1| hypothetical protein MC7420_6589 [Microcoleus chthonoplastes PCC
           7420]
          Length = 633

 Score = 41.9 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 36/155 (23%), Gaps = 1/155 (0%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
               E         + +       T  +   ++  P                P+  S+  
Sbjct: 451 QADTEPVTPDQETPEEASDIVTEETKSQPKPEASTPLDKTQTSPQEPQAKTEPVTPSQKT 510

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            +   +IV+EE+              +  T        ++  +            +    
Sbjct: 511 PEEASDIVTEETKSQPEPEASTPLD-KTQTSPEKPQAETEPVTPAPKTPPQPSEVIPEDT 569

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
            +N    +      TE       P+     ES  +
Sbjct: 570 ESNPETTKTVPEEATEKSVTPDKPLPPESPESEEN 604


>gi|195469976|ref|XP_002099911.1| GE16755 [Drosophila yakuba]
 gi|194187435|gb|EDX01019.1| GE16755 [Drosophila yakuba]
          Length = 3168

 Score = 41.9 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 43/173 (24%), Gaps = 1/173 (0%)

Query: 547  GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
            G  I   +      +     +G  V   ++   +  S +      K  + + +       
Sbjct: 1302 GKKIPSKVESNFVTEKVIDCRGKTVVEKISQRPRTPSPTTPKKNTKPSQNIPERVPETES 1361

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
               +  E       S   + +  +RR  R  + +      +       +        S  
Sbjct: 1362 EPEKDSEPETKKKTSVSVSKLETERRNSRTTKTKQPLQPKEPQSKVPTAKSPRKDSLSGR 1421

Query: 666  MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                  + T             +  D +  P     + SS        ++TR 
Sbjct: 1422 KRDSLVEETRTTTTTTTTRQGRKPSDTNGSPTIKDRLRSSPRKQKTSPQQTRT 1474


>gi|296236333|ref|XP_002763278.1| PREDICTED: THO complex subunit 2-like [Callithrix jacchus]
          Length = 1365

 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 40/170 (23%), Gaps = 7/170 (4%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSE 610
            V   ++ +     ++         +      DS     + + +         L    + E
Sbjct: 1167 VPRSDIPEPEREQKRRKIDTHPSPSHSSTVKDSLIELKESSAKLYVNHTPAPLSKSKERE 1226

Query: 611  SLEDIQDNIVS---EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
              +   D       E      + R+ R+R            ++         +  S    
Sbjct: 1227 MDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDLIKRRKEENGTMGVSKHKS 1286

Query: 668  MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              P +       E                  + + E  +  S    K++R
Sbjct: 1287 ESPCESPY--PNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESR 1334


>gi|297735565|emb|CBI18059.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       K   + +     + +  + ++   L   K E+ +D       E+ + 
Sbjct: 108 RRKAEEKRQARLEKELLEEEERKQREEVARLVEERRRLRDEKMEAEKDRGKPPFREKDSK 167

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +++R+ RR+       D G     S  + +   +        ++   + ++   H  
Sbjct: 168 KEAEKKRQERRK-----ERDKGSSKSNSDAEEMERKAGKESERKRELDRKSEIDRREHQK 222

Query: 687 TENYDV 692
           T     
Sbjct: 223 TGTEIS 228


>gi|238485520|ref|XP_002373998.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           flavus NRRL3357]
 gi|220698877|gb|EED55216.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus
           flavus NRRL3357]
          Length = 751

 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 32/144 (22%), Gaps = 7/144 (4%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST---- 625
             +            S+A +  K+ +    D+  +       +E    +    E      
Sbjct: 584 TDKKPEGEAASEPKSSEARATPKSDDEDVIDKTPITDDDGNVMETEGGSFGPFEEDDDAD 643

Query: 626 --GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                 + R RR+   P     +       S  ++  +        P             
Sbjct: 644 RIARAERNRLRRKGINPKA-VLNKPSKKSKSEPESTEESKDSESSAPEPKKKTATTTPEK 702

Query: 684 HGFTENYDVSIPPVSTPEMESSNS 707
               +         ST   + S  
Sbjct: 703 AKKAQKNTKPKSQESTTPEKKSEG 726


>gi|328860513|gb|EGG09619.1| hypothetical protein MELLADRAFT_95838 [Melampsora larici-populina
           98AG31]
          Length = 1765

 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 10/169 (5%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +E       L  +  +    S      + +     D+       + S      N +S++S
Sbjct: 71  VEGSKKKVKLKESQLEKKMVSAFKKASETVTIEDSDDDHTESGNARSESKSDTNFISDDS 130

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV----------IDDSFDMYMEPSDIT 674
               +++RR   RR   T   D       +                D      +  S+  
Sbjct: 131 DEGGKRKRRSGNRRETRTSGRDTRDSDSGNRRSTRDTRHRGSLKLKDPIMSEELRESESD 190

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            H+ ++  +       D         E E          +  +    RK
Sbjct: 191 EHDSVKVHSTRAQRKSDRDQKKRDRDESEDLTERGSSQPRAHKAKSPRK 239


>gi|195131205|ref|XP_002010041.1| GI15698 [Drosophila mojavensis]
 gi|193908491|gb|EDW07358.1| GI15698 [Drosophila mojavensis]
          Length = 1991

 Score = 41.9 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 42/160 (26%), Gaps = 2/160 (1%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E+ S  +++      V  +   P           ++   P  +  +    ++++      
Sbjct: 1415 ERESIAESIKPESQPVSLEPSRPHSVAENAKDDHEKPDSPKDEQSAEPSRRESVAESSKP 1474

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++  +     +  +     +  V D  +     + S +     S   +          
Sbjct: 1475 EGLKDEKSSPLSKEASRPGSVSESVKDEKAESVKNEKSAEPSRRESVAESTKPDSLKDDK 1534

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVK--KTRWWKRRK 723
                      P S  E           VK  K+    RR+
Sbjct: 1535 SLPASKEPSRPESVAESVKDEHDKPESVKDDKSGEPSRRE 1574



 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 36/162 (22%), Gaps = 4/162 (2%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E   P     +       +   P           D+              ++++      
Sbjct: 1523 ESTKPDSLKDDKSLPASKEPSRPESVAESVKDEHDKPESVKDDKSGEPSRRESVAESTKP 1582

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++  +     + P+  H     V D       + D         +    +   +    
Sbjct: 1583 ESLKDDKSVPASKEPSRPHSVTESVKDEHEKPESVRDDKSGEPSRRESVAESTKPDSLKD 1642

Query: 686  FTENYDVSIP--PVSTPEMESSNSSSDPIVK--KTRWWKRRK 723
                     P  P S  E           VK  K+    RR+
Sbjct: 1643 DKSLPASKEPSRPESVAESVKDEHEKQESVKDEKSGEPSRRE 1684



 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 54/216 (25%), Gaps = 6/216 (2%)

Query: 499  VALSILRSVEEYLLQYTAHNIIVHTHSD---VVLYLLNQKRATIVEYEARFGVSINVVIG 555
             ++      +E +    +                 L + K   + +  +R   ++  V  
Sbjct: 1660 ESVKDEHEKQESVKDEKSGEPSRRESVAESTKPESLKDNKSLPVSKEPSRPASAVESVKD 1719

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                 +    E+        +       D                   +     +  E  
Sbjct: 1720 EHEKPESVKDERSGEPSRRESVAESTKPDGLKDEKSHPASKEPSRPESVAESVKDDHEKP 1779

Query: 616  QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
            +     +      R+      +     D     +  + S   +V +   D +M+P    +
Sbjct: 1780 ESVKDEKSEEPSRRESVAETTKAEILKDDKSLPISKEPSRSSSVAESVKDEHMKPESARD 1839

Query: 676  HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                E       E    SI   S  + ES + S +P
Sbjct: 1840 EKSGEPSKR---EPVAESIKLDSLKDDESLSVSKEP 1872



 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 12/159 (7%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                + ++              D+  E V  +++  P  +    E  + + + ++ +   
Sbjct: 1479 DEKSSPLSKEASRPGSVSESVKDEKAESVKNEKSAEPSRRESVAESTKPDSLKDDKSLPA 1538

Query: 629  RKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             K   R      +   +H     V D  S +    +S     +P  + +   +       
Sbjct: 1539 SKEPSRPESVAESVKDEHDKPESVKDDKSGEPSRRESVAESTKPESLKDDKSVPASKE-- 1596

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVK--KTRWWKRRK 723
                     P S  E           V+  K+    RR+
Sbjct: 1597 ------PSRPHSVTESVKDEHEKPESVRDDKSGEPSRRE 1629


>gi|115760349|ref|XP_798355.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115949733|ref|XP_001184698.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 2169

 Score = 41.9 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 1/167 (0%)

Query: 557  ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
            ++  + +        +  +    +     +    D  IE V +  +        S E  +
Sbjct: 940  QIETQQYGATDEQEAEVEMEIEAEEEEIEEGKKEDARIEEVEEIPSKGQQQIFVSQERRR 999

Query: 617  DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
            D     ES         +   R+  T+  +     ++S + +    +       +     
Sbjct: 1000 DPYEFTESQSNKTPTPMKTWARKEDTEPKEKLPSKNLSEVSSTKPTTEQPSTSAAVTLKT 1059

Query: 677  NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 G+               T E E  N  + P + +TR   R+K
Sbjct: 1060 KRTPKGSRQNRGAKRKRPQDPETTEEEGDNVEN-PALNRTRTSPRKK 1105


>gi|325120362|emb|CBZ55916.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 455

 Score = 41.9 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 3/126 (2%)

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVS 651
                   E +    +S    D + +       G    K++RRR+      +   A   S
Sbjct: 303 EGREKKSGEKVRDARESRVEPDSKKSEGDGSEKGDAEPKKKRRRQEGGEERESEAAPRES 362

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP--VSTPEMESSNSSS 709
              S             E          E      T +          + PE      + 
Sbjct: 363 ATESKIARSLPEQADSAEDRRTEKKKREEKPDREATADPSRGTEKGLRAAPEKTEERHAR 422

Query: 710 DPIVKK 715
                K
Sbjct: 423 TGSKMK 428


>gi|95930674|ref|ZP_01313408.1| PSP1 [Desulfuromonas acetoxidans DSM 684]
 gi|95133326|gb|EAT14991.1| PSP1 [Desulfuromonas acetoxidans DSM 684]
          Length = 426

 Score = 41.9 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 30/139 (21%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
               + ++      +                K    +        + ++   + +R  R 
Sbjct: 272 PVASLSTNKTGAKEEPKKSGGSSPAPEKRQAKEGERKTGNKGKGGKPASRDGKPQRPARG 331

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           +        +          QN    +     +     +               D S   
Sbjct: 332 KSAEGRPSKNKRGGKPGQEKQNRPKKTSGPQEQQGQENSQRPNRKPRPDKGPAKDKSQAT 391

Query: 697 VSTPEMESSNSSSDPIVKK 715
            +T E    N   +P  KK
Sbjct: 392 PATGENNDKNQEKNPQDKK 410


>gi|327268845|ref|XP_003219206.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like
            [Anolis carolinensis]
          Length = 1451

 Score = 41.9 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 53/232 (22%), Gaps = 21/232 (9%)

Query: 505  RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEA-RFGVSINVVIGIELADK 561
            R     L      +  + +         N KR    I E E  R    I      +L   
Sbjct: 1173 RLDSTELDHSENEDYTMASPLPAK---KNDKRDDSDISELEKPRSRKKIITDPEDKLGMD 1229

Query: 562  LF----YIEKGSPVQALVNTGHKVGSDSQA--PSYDKNIECVWQDEALLPIPKSE--SLE 613
                     K    Q        +    +   P   +  E V + E     P  +     
Sbjct: 1230 DLSKLGQESKLRSGQRGRKRAAVISESEEPQWPEEKRLKEDVLESEDEQNSPPKKGRRGR 1289

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRR------PATDHHDAGVVSDVSSIQNVIDDSFDMY 667
              +    + +      K  +R R++          +        +     ++I+    + 
Sbjct: 1290 PPKAAAGATQKEESAAKTPKRGRKKATPVKPVEEEEEEGEEEGEEEERQMDIIEQKSKIR 1349

Query: 668  MEPSDITNHNLLENGAHGFTE-NYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +        E+      E N          P     +        +T+ 
Sbjct: 1350 QYKTPRKAQQRSESSEISAAESNQSTPQKKRGRPPKTPPSQQKKGRGGRTKQ 1401


>gi|157817873|ref|NP_001101708.1| ankyrin repeat domain-containing protein 12 [Rattus norvegicus]
 gi|149037368|gb|EDL91799.1| ankyrin repeat domain 12 (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 2047

 Score = 41.9 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 58/245 (23%), Gaps = 17/245 (6%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNII-------------VHTHSDVVLYLLNQKRATIV 540
           R +           E+Y  +  A                      +     LN +  ++ 
Sbjct: 654 RDKEKHRKEAEGEKEKYKSRDNAKEPQRSIEFDREFWKENFFKSDETEDLFLNMEHESLT 713

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS-DSQAPSYDKNIECVWQ 599
             E +  V   V       DK    E+    +          S   +     K  +    
Sbjct: 714 --EKKSKVEKTVKDDRLAKDKHASKERNCKEEREKTKRENEKSLKEERLKDPKEEKDGVS 771

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            E            + + +        V  +++ R  + R  +D        ++   +  
Sbjct: 772 AEKEAEGSSMAVSANQETSGPHSSEREVDIEKQERHSKEREKSDRRFQTKEKELDRTERK 831

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRW 718
           + +               L  +      +  D    P +    +      + + K + R 
Sbjct: 832 VSEKEKKLKHEHKSEREKLDFSDCTDRVKEKDRLYSPQTERCHKEGEKMRNTVRKAEDRE 891

Query: 719 WKRRK 723
             R K
Sbjct: 892 RAREK 896


>gi|268534632|ref|XP_002632447.1| Hypothetical protein CBG13668 [Caenorhabditis briggsae]
 gi|187028323|emb|CAP32433.1| hypothetical protein CBG_13668 [Caenorhabditis briggsae AF16]
          Length = 688

 Score = 41.9 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 20/114 (17%)

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           +               + ES                  +RR R R   P  D  +A   +
Sbjct: 242 EAWPDEANRPKTKRQLELESESAPPPARQEPRREHQKERRRSRYRDTSPREDSDEAQAGT 301

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
                            E +         +  H                +M   
Sbjct: 302 PPPERAKKHKPRRRTAPESNSRRREASESDSRHRTAPEAQAGPEYNPRRQMAPE 355


>gi|327279406|ref|XP_003224447.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Anolis
           carolinensis]
          Length = 1005

 Score = 41.9 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/146 (8%), Positives = 33/146 (22%), Gaps = 1/146 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q            S+A    K+ E       +    +    +         +S    
Sbjct: 247 RRSQEKNRKSRSPEDRSKAEEKIKSRERKKSPVVVESKSRDRGKKSKSPVEQRSKSKDRR 306

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ RR                +     + S       S        +        
Sbjct: 307 SRSKERKSRRSETEREKKPIKSPSKDASSGKENRSPSRRPGRSPKGRSLTPKPRDKLR-R 365

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714
           +    +    + + +S + +  P  +
Sbjct: 366 SRSPLLNDRRSKQSKSPSRNRSPSRR 391


>gi|189235987|ref|XP_971849.2| PREDICTED: similar to BMKETTIN [Tribolium castaneum]
          Length = 20466

 Score = 41.9 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 58/235 (24%), Gaps = 5/235 (2%)

Query: 494  RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
            R   +   ++L+  E    + T                 + +  T++  E R  + I   
Sbjct: 4969 RRVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQ 5028

Query: 554  IGIE----LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                       +   +E+   V+                            +    + + 
Sbjct: 5029 AETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQ 5088

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
            + +ED     + E      +K    R  RRP  D         V     +  +  +   +
Sbjct: 5089 KHVEDTTLLSLEEREKVTEKKEAETRGWRRPRKDDTSVERQKHVEDTTLLSLEEREKITQ 5148

Query: 670  PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723
              +              +     +    +    E      +    +TR W + RK
Sbjct: 5149 KKEEETRGWRRPRKDDTSVERKHTTEDTTLLSREEQEKIKETKDAETRGWRRPRK 5203



 Score = 40.7 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 3/169 (1%)

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
               +  +   +   S  + L           + P  ++      + +  + +  S  +  
Sbjct: 6079 DELVHTEDSTMIAVSEKERLEEQPQPETRGWRRPKKEEKRVEEEKPKDKVHVEDSIMIAV 6138

Query: 615  IQDNIVSEESTGVIR--KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             +   V E+     R  +R ++ ++        D   V D + I     +  D   +P  
Sbjct: 6139 SEKEKVEEQPQPETRGWRRPKKEQKPIEDEKPKDKVHVEDSTMIAVSEKEKIDEKPQPET 6198

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   +       +         S    E       P   +TR W+R
Sbjct: 6199 KGWRRPRKPTEEEKPQEPVRVEDSTSIAVSEDKKVDEQPQP-ETRGWRR 6246



 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 4/212 (1%)

Query: 513  QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572
            Q     I+     DV L     +   + + E      +++    ++       E  S  +
Sbjct: 4913 QRQTKEIVKEQIEDVQLKPSKIQSKEVEKLELE---KVDLKHRTKVVTGQKTEEISSLDR 4969

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             +      +    +    +K  +   +D           +ED     V +     I K+ 
Sbjct: 4970 RVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQA 5029

Query: 633  RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
              R  RRP  +         V     +  D  +   E  +              +     
Sbjct: 5030 ETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQK 5089

Query: 693  SIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723
             +   +   +E     ++    +TR W + RK
Sbjct: 5090 HVEDTTLLSLEEREKVTEKKEAETRGWRRPRK 5121


>gi|195386402|ref|XP_002051893.1| GJ17250 [Drosophila virilis]
 gi|194148350|gb|EDW64048.1| GJ17250 [Drosophila virilis]
          Length = 5552

 Score = 41.9 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 3/135 (2%)

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
             G     D    S           EA       +S+ D   +  S  S    ++   R R
Sbjct: 1542 DGESPDYDDIPVSKIPRGANDDDKEAEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSR 1601

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            R   + +   A       S + +        + P      + ++                
Sbjct: 1602 RNATSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPS---PPPDSEL 1658

Query: 697  VSTPEMESSNSSSDP 711
             S     S N+    
Sbjct: 1659 DSNKRRSSRNTQRKK 1673



 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 8/130 (6%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I +G+              DS   S         + +      +S   
Sbjct: 1544 ESPDYDDIPVSKIPRGANDDDKEAEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1603

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
               ++   +  + G +  +  ++RR R     +        D +   +   DS     + 
Sbjct: 1604 ATSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPSPPPDSELDSNKR 1663

Query: 671  SDITNHNLLE 680
                N    +
Sbjct: 1664 RSSRNTQRKK 1673


>gi|170782512|ref|YP_001710845.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 761

 Score = 41.9 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 39/170 (22%), Gaps = 13/170 (7%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
               +  E+G   +       +   D ++     N      D       + +  E    +
Sbjct: 122 ERPSYGAERGQRSERPSYGNARPARDERSERPSYNDRAPRNDRPSYGNDRPQRSERPSCD 181

Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                S       R  R     R +R     ++        + +N   +       P+  
Sbjct: 182 DRPARSERPSHNDRAERPSYGDRAQRSERPAYNDRAERPSYNDRNTRTERPAYSDRPARA 241

Query: 674 TNHNLLENGAHG--------FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              +  ++              E  +           E  + +  P   +
Sbjct: 242 ERPSYNDSRPARTERPSYGDRAERTERPSYNDRPARTERPSYNDRPARTE 291


>gi|332248972|ref|XP_003273638.1| PREDICTED: PHD finger protein 20 [Nomascus leucogenys]
          Length = 1012

 Score = 41.9 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVDNARPKEADHKTLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|311256485|ref|XP_003126672.1| PREDICTED: SRSF2-interacting protein-like [Sus scrofa]
          Length = 1455

 Score = 41.9 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 60/232 (25%), Gaps = 12/232 (5%)

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560
              L    E L++++    +  TH + +    ++    ++  E     S          +
Sbjct: 670 DKSLEEKTESLVEHSKTTELPKTHIEQIEKHFSEDNNEMIPMECESFCS---DQNESEIE 726

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI- 619
                +     +  V    +    S  P  +K        E+ +   +       + +  
Sbjct: 727 PSVNADAKQLNENSVEHSFQKNMSSSDPVKEKVESVSQPSESPIDTIEKAKKPRTRRSRF 786

Query: 620 -------VSEESTGVIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                     + T   +KR +    RR    +   +   S           S     +  
Sbjct: 787 HSPSTTWSPNKDTAREKKRSQSPSPRRETGKESRKSQSPSPKKESARGRKSSRSQSPKKD 846

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   ++ +       +       +P+ ++S  +     +      R K
Sbjct: 847 SGRERRPSQSRSPKRDGAKEGKRSESLSPKRDTSRENRRSQPRVKGSSPREK 898



 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 2/122 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P               ++ S     E   +          +     + +  S+       
Sbjct: 789 PSTTWSPNKDTAREKKRSQSPSPRRETGKESRKSQSPSPKKESARGRKSSRSQSPKKDSG 848

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           + RR  + R P  D    G  S+  S     D S +       +   +  E       E 
Sbjct: 849 RERRPSQSRSPKRDGAKEGKRSESLSP--KRDTSRENRRSQPRVKGSSPREKSRSQSGER 906

Query: 690 YD 691
             
Sbjct: 907 ES 908


>gi|118098001|ref|XP_414870.2| PREDICTED: similar to PACT [Gallus gallus]
          Length = 1802

 Score = 41.9 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 51/187 (27%), Gaps = 19/187 (10%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                  A      EK       V+           P+ ++  +     E  L   K  S 
Sbjct: 1081 KTDSVKASSSQKDEKTLGTPRKVHPKVAKDHPEARPAKEEKAKKDHPKE--LKSEKPSSK 1138

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            ED     V +  +   +  +R+R+    A   H+A  V            S     EP  
Sbjct: 1139 EDKSKKAVEKSKSSDAKAEKRKRKADEKADKEHEAASVKASKPETAESKTSPKGKTEPDG 1198

Query: 673  ITNHNLLENGAHG-------------FTENYDVS---IPPVSTP-EMESSNSSSDPIVKK 715
                   E    G              T    VS   +PPV  P E    +SS     K 
Sbjct: 1199 EKGERTPEKDKSGFLITPAKKIKLNRETGKKIVSGENVPPVKEPAEKVEPSSSKVKQEKV 1258

Query: 716  TRWWKRR 722
                +R+
Sbjct: 1259 KGKVRRK 1265


>gi|18698324|emb|CAC83859.1| synemin [Homo sapiens]
          Length = 1563

 Score = 41.9 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 45/183 (24%), Gaps = 10/183 (5%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKN 593
           E  +G +++    +      + + + +  Q           D++              ++
Sbjct: 410 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYIGEDSTIARES 469

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                   A      + S E         E      + R R    R   +          
Sbjct: 470 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFDSKEKA 529

Query: 654 SSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
           S  +N+  ++   +  E     +H + E      +              +E S      +
Sbjct: 530 SEERNLRWEELTKLDKEARQRESHQMKEKAKENDSLKEKSVREREVPISLEVSQDRRAEV 589

Query: 713 VKK 715
             K
Sbjct: 590 SPK 592


>gi|171685077|ref|XP_001907480.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942499|emb|CAP68151.1| unnamed protein product [Podospora anserina S mat+]
          Length = 739

 Score = 41.5 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 6/158 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE--ST 625
                       +  S     +   +      +       ++E+L    +    E     
Sbjct: 327 NKEGTRSPTKEKEARSGRATSANQASKRRSTMNSREAAYDEAEALRRAIEASKEEAHLEP 386

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             + +R +R R              +   S+   +D + D   +P   + +        G
Sbjct: 387 EGVPRRPKRGRSDSEEKQEGAKRQRTSSRSVSPSVDKTADESDDPKGPSRNGNKSKPRGG 446

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              N +  +      E +      +   K+    +RR+
Sbjct: 447 ARNNRNEKLSEKEEKERQ----RQEAANKRKGRAERRR 480


>gi|114645179|ref|XP_001164995.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 3 [Pan troglodytes]
 gi|114645181|ref|XP_001165094.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 6 [Pan troglodytes]
          Length = 1271

 Score = 41.5 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 547 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 606

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 607 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 660

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 661 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 718

Query: 720 KRRK 723
            R +
Sbjct: 719 SRER 722


>gi|326482192|gb|EGE06202.1| hypothetical protein TEQG_05098 [Trichophyton equinum CBS 127.97]
          Length = 998

 Score = 41.5 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/179 (8%), Positives = 37/179 (20%), Gaps = 9/179 (5%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603
                        E+      ++             +   + Q        + VW++   
Sbjct: 544 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEEPQPEEQNSKQRFPSKDVWEEPPQ 603

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                +            +              R     D        D+S  +      
Sbjct: 604 SQQLTTAVEAPADSEKSEKPEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPTKTQATSP 663

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            ++   PS                +  +   P   T   E+++ ++ P  K       R
Sbjct: 664 TELKKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDANPPAPKSKPALPPR 722


>gi|150004382|ref|YP_001299126.1| hypothetical protein BVU_1828 [Bacteroides vulgatus ATCC 8482]
 gi|294776814|ref|ZP_06742277.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|149932806|gb|ABR39504.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|294449290|gb|EFG17827.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 504

 Score = 41.5 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 6/117 (5%)

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
              +    L     ++      ++V +ES     KR+     R+      + G   + + 
Sbjct: 319 RRGEKPESLTESVKKNEPQKPVDLVEQESLTRFDKRKGNNSNRKKKRKPENNGNNGEGTP 378

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +N          +P +  +    EN             P  +  +     + + P 
Sbjct: 379 NENRRP------QQPKENRSQQPKENRPLREGRPKQPREPKENKAQQPREENGNRPK 429


>gi|149411346|ref|XP_001509803.1| PREDICTED: similar to interleukin 13 receptor alpha 1-binding
           protein-1 isoform 1 [Ornithorhynchus anatinus]
          Length = 644

 Score = 41.5 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 34/154 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                           ++     +  E     +      + +  E   ++   +E     
Sbjct: 211 HKDHEWEKLKEGEKDRNKNRISKQEKETEKSKDKERGKKEDKEREKDSEHDKEKEKKSSG 270

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + R R+R +                          +   E       +           
Sbjct: 271 GRERDRQREKDKDKGKEREKDKRKERLRDGERSKEKERNKEQDKAEKKSTGSEETPSTKV 330

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +          P+ E+ NS+       T+  +RR
Sbjct: 331 SAGPVKEAKPYPDKEAENSTKTARSVVTKVSRRR 364


>gi|281359563|ref|NP_001162826.1| bent, isoform G [Drosophila melanogaster]
 gi|272482442|gb|ACZ95095.1| bent, isoform G [Drosophila melanogaster]
          Length = 8588

 Score = 41.5 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 56/188 (29%), Gaps = 5/188 (2%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDS-QAP 588
            N+   ++ + E R  +          EL  K   ++K    +   ++     S   + P
Sbjct: 593 KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 652

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-- 646
              K       D++       +   D  ++  ++  +     +  ++             
Sbjct: 653 EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 712

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
             V    S +    + S D+  + +      +  +     +    +++   +T    SS 
Sbjct: 713 KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 772

Query: 707 SSSDPIVK 714
               P+ +
Sbjct: 773 IDKKPLEQ 780


>gi|49257511|gb|AAH73943.1| LOC23117 protein [Homo sapiens]
          Length = 361

 Score = 41.5 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 5/154 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 191 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 250

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHNLLENGA 683
            ++ +R+R       P       G V      +       +    EP      ++  +  
Sbjct: 251 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 310

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  DV             +       K+ R
Sbjct: 311 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRR 344



 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624
           +        +       +D    +     +    ++   P  + +  +E   +       
Sbjct: 215 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 274

Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                ++ +RRR        P       G V      +       +             +
Sbjct: 275 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 334

Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702
           E              P +  P+ 
Sbjct: 335 EPSRKPKRRRAADVEPSLPEPKR 357



 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 32/146 (21%), Gaps = 2/146 (1%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
              + T  +       PS D N++            K    +  +   +  E     ++R
Sbjct: 214 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEM--EPPPEPKRR 271

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           R              A  V   S                        +E  +        
Sbjct: 272 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRV 331

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717
             + P   P+   +      + +  R
Sbjct: 332 GDVEPSRKPKRRRAADVEPSLPEPKR 357


>gi|296138960|ref|YP_003646203.1| transcription termination factor Rho [Tsukamurella paurometabola
           DSM 20162]
 gi|296027094|gb|ADG77864.1| transcription termination factor Rho [Tsukamurella paurometabola
           DSM 20162]
          Length = 653

 Score = 41.5 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 24/98 (24%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E                  + AP  D       +++A       +  +    N   + 
Sbjct: 102 KVEAPKAEATTAEAPKTEAPKNDAPKNDAPKNDAPKNDAAPADAPKDDAKSGAKNDGDQP 161

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                  RR R +RR    D  +          +   D
Sbjct: 162 QQQREGGRRERNQRRGQNADGQNQNDRQGGDQNRPDRD 199


>gi|194750229|ref|XP_001957530.1| GF23983 [Drosophila ananassae]
 gi|190624812|gb|EDV40336.1| GF23983 [Drosophila ananassae]
          Length = 1986

 Score = 41.5 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 45/168 (26%), Gaps = 13/168 (7%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G         G                +  ++++  +    SE  E  Q+   ++E + 
Sbjct: 299 RGRSNDKAEARGKTRERSPAKKITKNKRKESFKEKDQIHGTFSEKSEKNQERGKTKERSK 358

Query: 627 V--------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                      K R R R R    +      +S  +  +   + +            +N 
Sbjct: 359 EEDHNPNKIRHKSRGRSRNRAKTRERSKGKDLSRENPAERSPERNISRGKTRDRSNENNQ 418

Query: 679 LENGAHGFTENY-----DVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   +          SIP  +    ++   S +    + +  +R
Sbjct: 419 SRGKTRDRSREKHQLLGKTSIPAGANDRGKTRERSKEKDNTRGKTRER 466


>gi|308512429|ref|XP_003118397.1| hypothetical protein CRE_00860 [Caenorhabditis remanei]
 gi|308239043|gb|EFO82995.1| hypothetical protein CRE_00860 [Caenorhabditis remanei]
          Length = 1719

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 31/147 (21%), Gaps = 1/147 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                              P+ +   E   +       P+  S +         E     
Sbjct: 210 KKEPTPAAKPADSSPKKAVPAKEPAKEPTKEPAKPAAKPRDSSPKKAVPVKSEPEVPPTP 269

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K   ++ +     D   A  V   +  +     +     +P   T              
Sbjct: 270 VKNPVKKWKPPWEDDDTPAEEVPQPAPEKKTPVLAKKEPAKPVADTKPKETPKVPEKPAA 329

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715
                 P  + P  E      DP  KK
Sbjct: 330 KPRDPSPKKAVPVKEPVKP-RDPSPKK 355



 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 39/164 (23%), Gaps = 16/164 (9%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           ++K  P             +  AP     +    +         S   + +     ++E 
Sbjct: 178 VKKWKPPWEDDEAPVDDVKEPPAPEKKTPVLQKKEPTPAAKPADSSPKKAVPAKEPAKEP 237

Query: 625 TGVIRKRRRRRRRRRPA--------TDHHDAGVVSDVSSIQNVIDDSFDMYME-----PS 671
           T    K   + R   P          +     V + V   +   +D      E     P 
Sbjct: 238 TKEPAKPAAKPRDSSPKKAVPVKSEPEVPPTPVKNPVKKWKPPWEDDDTPAEEVPQPAPE 297

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             T     +  A    +      P V            DP  KK
Sbjct: 298 KKTPVLAKKEPAKPVADTKPKETPKVPEKPAAKP---RDPSPKK 338


>gi|170093251|ref|XP_001877847.1| RNA polymerase II-associated protein [Laccaria bicolor S238N-H82]
 gi|164647706|gb|EDR11950.1| RNA polymerase II-associated protein [Laccaria bicolor S238N-H82]
          Length = 1095

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 54/188 (28%), Gaps = 22/188 (11%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             +     ++LR  +E+L +            +       +++  + + E     ++ V  
Sbjct: 912  QRRKYGDNMLRKGDEHLEKQRQFEADTQAKLEEARRKRQEEKDRLEDLERARMETLRVEA 971

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--- 611
                       E+    +  +    +V  +S      K  +       +    ++E    
Sbjct: 972  EKLAE------ERRLAREQAMEWTREVKMESDEERERKTKKVRKPKNDVGSGEEAEPKKK 1025

Query: 612  -------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
                          E+       EE     +KR  ++R  R   D   AG        + 
Sbjct: 1026 RRGKLKKAVSEQGDEEQAVFSDEEEVEKPTKKRPVKKRVVRDDDDEDVAGPRKKQFKSKE 1085

Query: 659  VIDDSFDM 666
            V+ D+ D 
Sbjct: 1086 VLSDTDDE 1093



 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 48/182 (26%), Gaps = 4/182 (2%)

Query: 536  RATIVEYEARFGVSINVVIGIELADK-LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
               I +   ++G ++       L  +  F  +  + ++       +   D         +
Sbjct: 906  SRDIADQRRKYGDNMLRKGDEHLEKQRQFEADTQAKLEEARRKRQEEK-DRLEDLERARM 964

Query: 595  ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
            E +  +   L   +  + E   +     +      + R+ ++ R+P  D           
Sbjct: 965  ETLRVEAEKLAEERRLAREQAMEWTREVKMESDEERERKTKKVRKPKNDVGSGEEAEPKK 1024

Query: 655  SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
              +  +  +     +       +  E      T+   V    V   + E          K
Sbjct: 1025 KRRGKLKKAVSEQGDEEQAVFSDEEE--VEKPTKKRPVKKRVVRDDDDEDVAGPRKKQFK 1082

Query: 715  KT 716
              
Sbjct: 1083 SK 1084


>gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2]
          Length = 624

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 37/156 (23%), Gaps = 3/156 (1%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618
           + +    G   +A  +               K IE + +        +    E +     
Sbjct: 316 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 375

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     + RR + RR        DA   +  S++    D +     +       N 
Sbjct: 376 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 435

Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713
               A    +         +        + + DP  
Sbjct: 436 ENREAGQAQQPRQSREARPAKLNRPPEVDGNRDPEE 471


>gi|299750554|ref|XP_001836825.2| hypothetical protein CC1G_04138 [Coprinopsis cinerea okayama7#130]
 gi|298408959|gb|EAU85042.2| hypothetical protein CC1G_04138 [Coprinopsis cinerea okayama7#130]
          Length = 823

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 33/129 (25%), Gaps = 17/129 (13%)

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRR----------------RRRRPATDHHDAGVVSDV 653
           E      D        GV  +R+RR                 R RR A +  ++  V   
Sbjct: 696 EEGASEGDEDQPSSFKGVRTRRQRREGMDPKSISAEEGLRTTRNRRAAANPDNSKPVGKR 755

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            + Q V   S                       T      +P     +  + N   D  +
Sbjct: 756 KADQPVASGSPSKRRRLEPSAQSRSSSPKKPAPTNKKAAPLPRTPQRKA-AVNGRKDGAL 814

Query: 714 KKTRWWKRR 722
            K R   RR
Sbjct: 815 PKKRVPGRR 823


>gi|242007925|ref|XP_002424766.1| PC4 and SFRS1-interacting protein, putative [Pediculus humanus
           corporis]
 gi|212508280|gb|EEB12028.1| PC4 and SFRS1-interacting protein, putative [Pediculus humanus
           corporis]
          Length = 551

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 39/152 (25%), Gaps = 5/152 (3%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            IE G      + T           +  K  +     + +       +           E
Sbjct: 91  KIENGEESTLGLWTSGDPPELIVKRNIKKAKKSEDSIQEIKEDDTQGAKSKQSKRKRDTE 150

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
            T      ++RR       +  +      +   +  + D      +           +  
Sbjct: 151 DTEGDIDSKKRRIISHEKEETSNISRSGRIIKPKKFLYDEDGEDADSKAKPKMPTFSSPP 210

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                   +S PP + PE++  N+   P  K+
Sbjct: 211 P-----TQISSPPAAPPEIKKENTIKKPSPKE 237


>gi|170592847|ref|XP_001901176.1| Sec63 domain containing protein [Brugia malayi]
 gi|158591243|gb|EDP29856.1| Sec63 domain containing protein [Brugia malayi]
          Length = 748

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 68/227 (29%), Gaps = 28/227 (12%)

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYE--ARFGVSINVVIGIELAD-KLFYIEKGSPVQA 573
               + T +D+      ++R  +          +   +     L     F ++     Q 
Sbjct: 395 RRNRIITCADLANLNEIKRRQVLQSLSDAEYNDIVFVLQSMPRLNIDPHFEVQGEDDAQK 454

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE--DIQDNIVSEESTGVIRKR 631
           +              S   ++    ++   +    +E +E  D ++    E    V +++
Sbjct: 455 VTVGSVVTLKIILTRSSLLDLNKREEEMREINEKDAEPMEMMDDEEETNEERDNNVPKRK 514

Query: 632 -----RRRRRRRRPATDHH-----------------DAGVVSDVSSIQNVIDDSFDMYME 669
                ++++ R +P  +                   +   + D    +   +D  +   +
Sbjct: 515 IWEKPKKKQNRTKPTRNRQGHKVKVVKRVVVKVDENNKLKLEDQKKDRKENNDDMETNGD 574

Query: 670 PSDITNHNLLENGAHGFTENYD-VSIPPVSTPEMESSNSSSDPIVKK 715
             +    +  +       E  +      +   E ++ + +++ +VKK
Sbjct: 575 SENEELSDSEKGYVKNGNEKENGSGSEGMDEEESDNEDWANENMVKK 621


>gi|109502333|ref|XP_001075554.1| PREDICTED: similar to FLJ00128 protein [Rattus norvegicus]
 gi|293353590|ref|XP_341310.4| PREDICTED: similar to FLJ00128 protein [Rattus norvegicus]
          Length = 1569

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 33/145 (22%), Gaps = 5/145 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNIVSEEST 625
           P +                  D  +    +  A      SES     E +       E  
Sbjct: 358 PGEGSSTGASSDSPSGAEADPDAAVLEAPEPPAEASGEASESCLLSGEAVGGVGQGTEGP 417

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA-H 684
               +R  +  RR+       A      S+  +  D       E   + + +  E     
Sbjct: 418 PDTPRRTGKGNRRKKRAAGRGAVSRGGESTPLSPRDKEETRQPEVLSLPSPSEQEPVECS 477

Query: 685 GFTENYDVSIPPVSTPEMESSNSSS 709
              E  D   P   + E        
Sbjct: 478 LVKEKEDSGKPESESKEELKPADEK 502


>gi|170027943|ref|XP_001841856.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167868326|gb|EDS31709.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 960

 Score = 41.5 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 33/136 (24%)

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
                       +     + K++  +  +    S+      + R R R +          
Sbjct: 120 SRVKATKRDKSHERRERSVEKAKDRKKDKSPKRSDGDKKKGKDRSRSRSKSVEKRSKDKR 179

Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
              S   S +     S D     S   +    +      + +         + +   S  
Sbjct: 180 RDRSGSRSTRKEDTKSKDKRRNRSRSASEKRSDKKRQDRSPSTSKKRDEEKSRKRSPSAG 239

Query: 708 SSDPIVKKTRWWKRRK 723
               +  K R   +R+
Sbjct: 240 KRKEVESKKRDEPKRR 255



 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            + +G   +           +             W+      + +SE+ +         +
Sbjct: 283 SVSRGKQAERRRERSASNRRERMTRLRSPASAMKWEILKQRNVSQSENRDSDDGKRRGNK 342

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                 KRR + + RR         V     S   V           +     N   + +
Sbjct: 343 DKKDDEKRRGKSKDRRERKRSETPEVRQRNRSESPVERPRKRYDSPMAPKAFRNKSRSPS 402

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                      P  S  +  S +  +    +     + R+
Sbjct: 403 REKPRKERTKSPKASYRKDRSKSPVAKRRDRSRSPIEERR 442



 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 43/163 (26%), Gaps = 5/163 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+            K  S  ++    K  +   +  +     +S+     +    S    
Sbjct: 132 ERRERSVEKAKDRKKDKSPKRSDGDKKKGKDRSRSRSKSVEKRSKDKRRDRSGSRSTRKE 191

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-----E 680
               K +RR R R  +    D        S     D+       PS      +      E
Sbjct: 192 DTKSKDKRRNRSRSASEKRSDKKRQDRSPSTSKKRDEEKSRKRSPSAGKRKEVESKKRDE 251

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 + +    +         S++      V + +  +RR+
Sbjct: 252 PKRRERSASKTGKVDERRRGRSRSNSGDRSRSVSRGKQAERRR 294


>gi|45552151|ref|NP_995598.1| bent, isoform C [Drosophila melanogaster]
 gi|45444797|gb|AAS64600.1| bent, isoform C [Drosophila melanogaster]
          Length = 8648

 Score = 41.5 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 56/188 (29%), Gaps = 5/188 (2%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDS-QAP 588
            N+   ++ + E R  +          EL  K   ++K    +   ++     S   + P
Sbjct: 653 KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 712

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-- 646
              K       D++       +   D  ++  ++  +     +  ++             
Sbjct: 713 EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 772

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
             V    S +    + S D+  + +      +  +     +    +++   +T    SS 
Sbjct: 773 KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 832

Query: 707 SSSDPIVK 714
               P+ +
Sbjct: 833 IDKKPLEQ 840


>gi|325119771|emb|CBZ55324.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 2263

 Score = 41.5 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/128 (7%), Positives = 29/128 (22%)

Query: 568  GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
            G+              +      ++      +++           E   +    E +   
Sbjct: 2057 GAKEARADEKAGGEKDEENDGKREEGDTDEMEEQREEDSGAGAPEEAPVEEKGDENAGEN 2116

Query: 628  IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              ++RRR+R     ++                  ++ +   E +D    +         +
Sbjct: 2117 PSRQRRRKRADEDVSESRKQSGDRGARRQAEAEKEASEEAQENADEEEQSNESETKEAES 2176

Query: 688  ENYDVSIP 695
                    
Sbjct: 2177 HADQSETK 2184


>gi|281359561|ref|NP_001162825.1| bent, isoform F [Drosophila melanogaster]
 gi|272482441|gb|ACZ95094.1| bent, isoform F [Drosophila melanogaster]
          Length = 8933

 Score = 41.5 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 56/188 (29%), Gaps = 5/188 (2%)

Query: 532  LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDS-QAP 588
             N+   ++ + E R  +          EL  K   ++K    +   ++     S   + P
Sbjct: 868  KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 927

Query: 589  SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-- 646
               K       D++       +   D  ++  ++  +     +  ++             
Sbjct: 928  EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 987

Query: 647  AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
              V    S +    + S D+  + +      +  +     +    +++   +T    SS 
Sbjct: 988  KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 1047

Query: 707  SSSDPIVK 714
                P+ +
Sbjct: 1048 IDKKPLEQ 1055


>gi|332217894|ref|XP_003258097.1| PREDICTED: neurofilament heavy polypeptide [Nomascus leucogenys]
          Length = 997

 Score = 41.5 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 11/184 (5%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           +K  +  + EA+           E A      E  +P +A      +  S  +A S  K 
Sbjct: 599 EKSKSPEKEEAK---------SPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPVKE 649

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                +        ++++ E  +  +  E  +    K   +   + P  +   + V  + 
Sbjct: 650 EAKTPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPVKEEAKTP--EKAKSPVKEEA 707

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            S +       +    P    +    E  +    +   V  P   TP  E + S +D   
Sbjct: 708 KSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKTLVVKSPEAKTPVKEEARSPADKSP 767

Query: 714 KKTR 717
           +K R
Sbjct: 768 EKAR 771


>gi|301605148|ref|XP_002932194.1| PREDICTED: hypothetical protein LOC100170167 [Xenopus (Silurana)
           tropicalis]
          Length = 502

 Score = 41.5 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 1/131 (0%)

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
           + E   + E      +S+  +  + N    E      + R R R R             +
Sbjct: 280 DRELEREKERQRLERESKEKKRSRSNERGLERKRSKSRERHRTRSRSRDRKADRRERDKE 339

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
             + +      +D      D       +                    +   S       
Sbjct: 340 KEN-ERSRKRDYDKKGNGRDKEADRTRDRSKERRRSQEKKDREDKRHRDDRDSRKERRHS 398

Query: 713 VKKTRWWKRRK 723
             +++  K+RK
Sbjct: 399 RSRSKDRKQRK 409


>gi|312216586|emb|CBX96536.1| hypothetical protein [Leptosphaeria maculans]
          Length = 594

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 40/155 (25%), Gaps = 1/155 (0%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSESLEDIQDNIVSEESTG 626
            +P         K       P+ D           A  PI  +   ++I++         
Sbjct: 391 VAPAGRPRLNLAKRTVSEAQPAQDTTPSDKPNPFGAARPIDTATREKEIEEKRQLALRQK 450

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                + R  +R        A   +  ++      +        ++       ++  +  
Sbjct: 451 KEADEKAREEKRAKDAAEKAASKATAPATTSAEKKEDGSEEKPRANFEILQRADDEGNSA 510

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            ++ D     V    ++      DP      W ++
Sbjct: 511 GQDEDAQGKIVDDKAVKPQEVVRDPAKADGSWRRK 545


>gi|195331685|ref|XP_002032530.1| GM23476 [Drosophila sechellia]
 gi|194121473|gb|EDW43516.1| GM23476 [Drosophila sechellia]
          Length = 642

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 31/159 (19%), Gaps = 7/159 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +            +   DS  P   ++ +                 E    +        
Sbjct: 256 RRRSNSDQSPPRRRRDQDSTPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRR 315

Query: 627 VIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              +   RRRR       RR   D          S          +    P    + +  
Sbjct: 316 GNDQYPVRRRRDSDQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQS 375

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            N     +                    +     +K+RW
Sbjct: 376 PNRKRDKSPRRRRDSDQSPPRNQSPPPRNRFREERKSRW 414



 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 42/174 (24%), Gaps = 17/174 (9%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +               S  +  +   +     +D    P  +  S  D        +   
Sbjct: 215 RNDKPSPAGKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPPRRRRDQDS 274

Query: 627 VIRKRRR-------RRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
              +RRR       RRR+       RR   D   +       + Q  +    D    P  
Sbjct: 275 TPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRGNDQYPVRRRRDSDQSPPR 334

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTRWWKRRK 723
               +           +      P      P     +    P  K+ +  +RR+
Sbjct: 335 RRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPNRKRDKSPRRRR 388



 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/176 (9%), Positives = 39/176 (22%), Gaps = 1/176 (0%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
           V +              I++     +   +  +    ++     +            P  
Sbjct: 130 VKVKDEFSPSRRRSPVRIKQEKRSSSRDLSPARSRKPAKREESPQRGRRRAASSDQSPPR 189

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
           +     D   +      +     R+ R  +  PA    D+                    
Sbjct: 190 RGRDG-DQSPSRRKRRDSDQSPPRKARNDKPSPAGKRRDSDQSPPRKRTGKASPTRRRRD 248

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + S         + +         S PP    + + S         ++   + RK
Sbjct: 249 SDQSPPRRRRSNSDQSPPRRRRDQDSTPPRRRRDSDQSPPRRRKADDQSPVRRERK 304


>gi|195110799|ref|XP_001999967.1| GI24826 [Drosophila mojavensis]
 gi|193916561|gb|EDW15428.1| GI24826 [Drosophila mojavensis]
          Length = 2080

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 81/284 (28%), Gaps = 29/284 (10%)

Query: 437  RSVEKKLKESLKKD-RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495
            + VE ++  S  +D  A+ +    S   L+   + R   ++ E         K    +  
Sbjct: 1364 KRVESEMYNSFGQDVSAKYKSKYRS---LMFNIKDRKNKTLFEKICAKQVEPKQLVRMTP 1420

Query: 496  QSSVALSILRSVEEYLLQY---TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
                +  + +  EE           + +          +   K   +   E++  V++  
Sbjct: 1421 AELASQELAKWREEENRHQLDMIKKSELDLLSCAQNYVVKTHKGEEL--IESKMDVTL-- 1476

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                E  +      +       +++     S   + + D + +    D       K    
Sbjct: 1477 ---PEEEEAQEEGGRCKEKVDSIDSKKGSQSLDTSSTTDVSNKDHDHDRPSTAKEK---- 1529

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                      +S      R R R +R  +   H+    +  S  ++              
Sbjct: 1530 --------HSKSREKDHSRERDREKRHKSHRSHNNQSGTKRSRSRSSSRGHSQEKRSHKR 1581

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              + + ++      + +  +S   V   +   S+    P  KKT
Sbjct: 1582 HHHEHDMDKEKEQTSRDKQLSKEHVDKVQ---SSVQKKPTEKKT 1622


>gi|158287240|ref|XP_309322.3| AGAP011327-PA [Anopheles gambiae str. PEST]
 gi|157019556|gb|EAA05263.3| AGAP011327-PA [Anopheles gambiae str. PEST]
          Length = 356

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 3/137 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSESLEDIQDNIVSEESTGV 627
            P +     G    S+ +  +  +           LL  PKS++ E  +     +E +  
Sbjct: 2   QPKEQKKTKGKSESSNEENANEPQTNGQHGAGWSVLLKNPKSKNAERRKAATEVDEPSKS 61

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI--DDSFDMYMEPSDITNHNLLENGAHG 685
            +++ ++R+         +    +     Q  +  +++  +        N +  E+    
Sbjct: 62  EKRKGKKRKADDGNGKSDETVDDAGSQKHQKKVKPNETVTVNGTKKQSENSSPSEHPKSN 121

Query: 686 FTENYDVSIPPVSTPEM 702
            +E  D +      P  
Sbjct: 122 GSEKKDKTTNAKVKPVS 138


>gi|76628437|ref|XP_608884.2| PREDICTED: CG15625-like [Bos taurus]
 gi|297479961|ref|XP_002691118.1| PREDICTED: CG15625-like [Bos taurus]
 gi|296482910|gb|DAA25025.1| CG15625-like [Bos taurus]
          Length = 652

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 38/170 (22%), Gaps = 3/170 (1%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
           V    L  + +      P +                  D+    V   E    I      
Sbjct: 156 VPEETL-REQYEKTGLEPTEPTKPESPSEKPRKSIEEADQQPPKVTTSENPEEIQSKSPT 214

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           E   ++    +      K        +  T        S+ S  ++       +      
Sbjct: 215 EKRTESPEQAKPEFPEEKPSTATEETQEKTPEPLEETESEFSEEKSRKPIEDTVREPSGK 274

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                  E  +   +E      PP  T  ++  +       +  R   RR
Sbjct: 275 TIPEVQEETPSKSTSERVL--EPPQDTKPVDKKDKQKKSTEETDRTPSRR 322


>gi|327305565|ref|XP_003237474.1| hypothetical protein TERG_02195 [Trichophyton rubrum CBS 118892]
 gi|326460472|gb|EGD85925.1| hypothetical protein TERG_02195 [Trichophyton rubrum CBS 118892]
          Length = 422

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 3/160 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +      N    +                  +   L    S ++ D   + +  E   
Sbjct: 178 RETDPAPSSNQRIGIDGADIEIEEIPESSNAQVNVDDLSQEDSPAMNDATLSKLPAEKPR 237

Query: 627 VIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
             +   RRRR  R     +                +++      + + +       +G  
Sbjct: 238 TRQNPARRRRGLRTEQVLEQVTGNETRPTRPPLVALNEHSKKAEDSASLRKEQATSSGDE 297

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV-KKTRWWKRRK 723
             T+  D     ++  E    + +S P + ++TR   RR+
Sbjct: 298 NSTKTGDRKPGGLAHTETPEDSETSTPNIARETRLRSRRQ 337


>gi|238878415|gb|EEQ42053.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 407

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 2/137 (1%)

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
               ++ + +   +    ++        +  +    +  ++E T  I+KR RR ++ +  
Sbjct: 253 EKPEKSKNGEDVSKDKSVNKDTKGQEDVKLSKKSNGSKSTDEGTKEIKKRPRRSKKPKDT 312

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
           ++       S   +  +   +            N    ++      +    S PP    +
Sbjct: 313 SEKTKKQTESKSGTTSDEKTEVAKPSKATKSKANKPTSKSSKPELKDEQSSSTPP--KKQ 370

Query: 702 MESSNSSSDPIVKKTRW 718
                S      + T+ 
Sbjct: 371 SRKPRSQPKDSQQTTKV 387


>gi|195504747|ref|XP_002099211.1| GE10789 [Drosophila yakuba]
 gi|194185312|gb|EDW98923.1| GE10789 [Drosophila yakuba]
          Length = 642

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 1/153 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       K  SD   P   K  +            +S   +   ++        
Sbjct: 262 RRRRDKDSTPPRRKKDSDQSPPRRRKAEDQSPARRVRKDSDQSPPRKRRGNDQSPVRKRR 321

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   RRRR    +              +   +D      +     +     + +   
Sbjct: 322 DSDQSPPRRRREDKQSPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPTRKRDKSPRR 381

Query: 687 TENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718
             + D S P       +S    +     +K+RW
Sbjct: 382 RRDSDQSPPRNRRSREQSPPPRNRFKEERKSRW 414


>gi|171680257|ref|XP_001905074.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939755|emb|CAP64981.1| unnamed protein product [Podospora anserina S mat+]
          Length = 980

 Score = 41.5 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/129 (8%), Positives = 30/129 (23%)

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           K  E +           +   +  +         GV   +   +++             +
Sbjct: 178 KRAEGLQSKTQTASTADAAETKTSEAAEAQPVVNGVNGDKAAHKKQPDSRAAEQPPRRNA 237

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
              +  N  ++   + +      +            +    +   V   E  +     + 
Sbjct: 238 PRGARANDKEEKTSVTLPSVADASAWPEPKATAAAVKEQQPTRKSVEKTESSAKEGQDEA 297

Query: 712 IVKKTRWWK 720
             KK  W K
Sbjct: 298 APKKKDWKK 306


>gi|297673173|ref|XP_002814649.1| PREDICTED: biorientation of chromosomes in cell division 1-like
            [Pongo abelii]
          Length = 2440

 Score = 41.5 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 69/251 (27%), Gaps = 23/251 (9%)

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            +G+  ++   + S  +       +  A  I  H+       +  ++R        +  +S
Sbjct: 2109 SGFGTNEEIHSKSYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMPKRKRKQHYLS 2168

Query: 550  INVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIEC 596
                           IE                     +    K  S++ + +     E 
Sbjct: 2169 SEDEPDDNPDVLDSRIETAQRQCSETEPHDTKEENSGDLEELSKTSSETNSTASRVMEEK 2228

Query: 597  VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHD 646
                 +     K E  +D       E+   +I+++R R R          +    TD   
Sbjct: 2229 DEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVEATLKMKDDSKTDTGI 2288

Query: 647  AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
              V    SS +  +  + +   E +++   ++  +                    +  S+
Sbjct: 2289 VTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVASVRRRGRKPKRSLTVSD 2348

Query: 707  SSSDPIVKKTR 717
             +     ++ R
Sbjct: 2349 DAESSEPERKR 2359


>gi|326478082|gb|EGE02092.1| origin recognition complex subunit Orc4 [Trichophyton equinum CBS
           127.97]
          Length = 698

 Score = 41.5 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/126 (8%), Positives = 28/126 (22%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
             P +    +   +  + +              +   P  + ES  +      +E+    
Sbjct: 5   SRPSKRRRVSNPDLDLEPERRESPSPTRTRKTRKDTKPATEPESAANAGTEEAAEKKDDE 64

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              +  RR  R   T +      +     + V +D+                 +      
Sbjct: 65  APSQSTRRSARIRVTGNSVVSTSAGPPRPRVVEEDTTQNSKRSRKANISIAGSSSTKKLA 124

Query: 688 ENYDVS 693
                 
Sbjct: 125 RKSSKP 130


>gi|242014266|ref|XP_002427812.1| nesprin, putative [Pediculus humanus corporis]
 gi|212512281|gb|EEB15074.1| nesprin, putative [Pediculus humanus corporis]
          Length = 6758

 Score = 41.5 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 7/193 (3%)

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGS 583
            L + KR T+   +                 +   IEK         P + L +   K   
Sbjct: 896  LEDLKRETLSFIKHEQPTDERFTPDTRDPTRTVTIEKVTKIITYEEPDEKLKSLPRKDIE 955

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
                 S++ ++E  +  +           +   ++ V  E       + +   + +P   
Sbjct: 956  YVLKESFEDDVEKKYTPKDKKDKKHKPDDKHKPEDKVKPEDKVKPEDKHKPEDKVKPEDK 1015

Query: 644  HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
            H     V      +       D  ++P D T   +        +  Y          +  
Sbjct: 1016 HKPDEKVKPEDKHKRDDKHKPDEKVKPVDSTKDYIFVKDKKEKSPKYAEHYEKTKPDDKH 1075

Query: 704  SSNSSSDPIVKKT 716
              +    P  K  
Sbjct: 1076 KPDDKVKPDEKHK 1088



 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 7/193 (3%)

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGS 583
            L + KR T+   +                 +   IEK         P + L +   K   
Sbjct: 1289 LEDLKRETLSFIKHEQPTDERFTPDTRDPTRTVTIEKVTKIITYEEPDEKLKSLPRKDIE 1348

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
                 S++ ++E  +  +           +   ++ V  E       + +   + +P   
Sbjct: 1349 YVLKESFEDDVEKKYTPKDKKDKKHKPDDKHKPEDKVKPEDKHKPEDKVKPEDKVKPEDK 1408

Query: 644  HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
            H            +       D  ++P D T   +        +  Y          + +
Sbjct: 1409 HKPDDKHKPDDKHKPEDKHKPDDKVKPVDSTKDYIFVKDKKEKSPKYADLYEKAKPDDKD 1468

Query: 704  SSNSSSDPIVKKT 716
              +    P  K  
Sbjct: 1469 KPDEKVKPDDKPK 1481



 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 7/193 (3%)

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGS 583
            L + KR T+   +                 +   IEK         P + L +   K   
Sbjct: 3466 LEDLKRETLSFIKHEQPTDERFTPDTRDPTRTVTIEKVTKIITYEEPDEKLKSLPRKDIE 3525

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
                 S++ ++E  +  +           +   ++ V  E       + +   + +P   
Sbjct: 3526 YVLKESFEDDVEKKYTPKDKKDKKHKPDDKHKPEDKVKPEDKHKPEDKVKPEDKVKPEDK 3585

Query: 644  HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
            H            +       D  ++P D T   +        +  Y          + +
Sbjct: 3586 HKPDDKHKPDDKHKPEDKHKPDDKVKPVDSTKDYIFVKDKKEKSPKYADLYEKAKPDDKD 3645

Query: 704  SSNSSSDPIVKKT 716
              +    P  K  
Sbjct: 3646 KPDEKVKPDDKPK 3658


>gi|156541982|ref|XP_001599540.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 2213

 Score = 41.5 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 45/160 (28%), Gaps = 5/160 (3%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +++    +      + V S  ++ S     +   + + L+   +   ++    +   EE
Sbjct: 688 ELKENRKRKDDFEEDYDVASIPKSKSRKIEKKESKELDVLIDRVRKSKVKKESPDRSVEE 747

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
              +      ++ R+            +D    +     S ++             E   
Sbjct: 748 GEKLSSPTAVKKNRKANKEKPESPTKHNDKEKEKKSKKKSHELLK-----NGELKKECEV 802

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  + +  P    E    N +      K R  +RR+
Sbjct: 803 KSIERTTNANKSPAKKIESSVKNDTESLDSLKDRISERRR 842


>gi|326476626|gb|EGE00636.1| origin recognition complex subunit Orc4 [Trichophyton tonsurans CBS
           112818]
          Length = 688

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/126 (8%), Positives = 28/126 (22%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
             P +    +   +  + +              +   P  + ES  +      +E+    
Sbjct: 5   SRPSKRRRVSNPDLDLEPERRESPSPTRTRKTRKDTKPATEPESAANAGTEEAAEKKDDE 64

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              +  RR  R   T +      +     + V +D+                 +      
Sbjct: 65  APSQSTRRSARIRVTGNSVVSTSAGPPRPRVVEEDTTQNSKRSRKANISIAGSSSTKKLA 124

Query: 688 ENYDVS 693
                 
Sbjct: 125 RKSSKP 130


>gi|302406280|ref|XP_003000976.1| ankyrin repeat protein [Verticillium albo-atrum VaMs.102]
 gi|261360234|gb|EEY22662.1| ankyrin repeat protein [Verticillium albo-atrum VaMs.102]
          Length = 1462

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 53/165 (32%), Gaps = 8/165 (4%)

Query: 566 EKGSP---VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           E+  P    +   +    +  D        + E   +       P   S  D        
Sbjct: 832 ERLKPELLAEKYHDRTKALKRDESRERLPGSSEPPSKRHRSSVTPPHSSKSDRDGAEGPV 891

Query: 623 ESTGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           +   +  + + RR+R        +     G     +S++    D     ++PS  T+ + 
Sbjct: 892 KRRRLDTEGKERRQRAADSADERSRSTQDGSAKPKASLRETDGDGQRTTLKPSSDTDSHR 951

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +   H  ++   + +      +++  ++      K++   KRR+
Sbjct: 952 KDQTRHSDSDKSSIHVKSEDV-DVDMRDAPLPKAPKESDDEKRRR 995


>gi|194909374|ref|XP_001981933.1| GG12319 [Drosophila erecta]
 gi|190656571|gb|EDV53803.1| GG12319 [Drosophila erecta]
          Length = 654

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 4/155 (2%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             L +      S+      + + E    D+    +  +E  +  +     +      +  
Sbjct: 341 DNLRDNKDHRKSNDGRSRTEDHREPKRADDPRNRMSSAERKKAREQRHQEQSERDDRKNV 400

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           RRR R R    + + +   +  +       D   +  E S  +        +        
Sbjct: 401 RRRTRSR-EKQEQNRSRSRNWPNGSARKNSDRERIRNERSSRSRDRTHRRHSRSRDREER 459

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWW---KRRK 723
               P    E E S S      +++R     +RR+
Sbjct: 460 RRSRPRDQLERERSRSRDQKERRRSRPREQNERRR 494



 Score = 41.1 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 37/151 (24%), Gaps = 7/151 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++        +          + S D+      +    L   +S S +  +         
Sbjct: 430 DRERIRNERSSRSRDRTHRRHSRSRDREERRRSRPRDQLERERSRSRDQKERRRSRPREQ 489

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+ R R +  +    + D       +S Q               + N          
Sbjct: 490 NERRRSRSRDQTEKRPPQNRDHNKSRRFNSPQERRRTEDSGGSHRDTLRNQ-------KR 542

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             E    S   V+      S+ +  P  K+ 
Sbjct: 543 SPERRQQSRDRVNHRVDTHSSRNKSPEKKRK 573


>gi|92116125|ref|YP_575854.1| helicase-like [Nitrobacter hamburgensis X14]
 gi|91799019|gb|ABE61394.1| helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 1140

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/171 (9%), Positives = 30/171 (17%), Gaps = 2/171 (1%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                         +  +   A+         D   P+  + +       A      +   
Sbjct: 909  ETSPSAVSPPDIADSAASDDAVETAPADATPDQSVPADAEGVASAEIAAADASSAHATDA 968

Query: 613  EDIQDN--IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
                               +  R R RR+          V+D  + +             
Sbjct: 969  APATVEVWRPGGRPADRRPRHDRSRHRRQQPRQDGAQPAVADGEAGEGAQKRERHGRGRR 1028

Query: 671  SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                       G      +      P             DP   K +   R
Sbjct: 1029 ERQKEARRPSTGVAAEGASAGSESAPGRELREGKGRPQRDPFQGKGKNRDR 1079


>gi|301620046|ref|XP_002939395.1| PREDICTED: membrane-associated guanylate kinase, WW and PDZ
            domain-containing protein 1 isoform 1 [Xenopus (Silurana)
            tropicalis]
          Length = 1452

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 43/170 (25%), Gaps = 9/170 (5%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                E                  ++ +    +++     +       D  +    K +S 
Sbjct: 1258 KGNREYGRPH-----NEHHTWNGSSKNYSVQNNRKDRSPEGRRPRQADRTMTNGQKRQSP 1312

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDH-HDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            E    N  +  +   + +R +  RR+  +     +   V            S D +M+  
Sbjct: 1313 EKR--NEGTRSAENTLERREKNERRKEVSPQKPRERSPVRRRDGSPTRRRKSLDRFMDQR 1370

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
               +     +      ++ D           E S    +   + T    R
Sbjct: 1371 RSPDRRRESSPDRRRAKSTDRRRERSPERRRERSPDKRNKEQR-TSNRDR 1419


>gi|299746231|ref|XP_001837827.2| hypothetical protein CC1G_12950 [Coprinopsis cinerea okayama7#130]
 gi|298406960|gb|EAU83991.2| hypothetical protein CC1G_12950 [Coprinopsis cinerea okayama7#130]
          Length = 842

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 43/154 (27%), Gaps = 3/154 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PVQ    + +++ S  + PS +                K        +    E+      
Sbjct: 692 PVQEDEPSENEIDSTPKRPSRESQATTPTTPPPHGTARKRARSPSDSETSDEEDDELPGP 751

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
             R ++RR     +  D       S+    +   F     PS I         + G T  
Sbjct: 752 NTRAKKRRAAAEQEPRDEPPTLRRSTRAIKVAKRFGQEDVPSVIQRIQKPGANSKGSTTR 811

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                    + E    +    P   K+R   +R+
Sbjct: 812 SKSRGGHSKSTEGRKHD---APAKAKSRTKDKRR 842



 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 3/160 (1%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE---CVWQDEALLPIPKSESLEDIQDNI 619
             +E+  P      +      + +AP   +       V +DE       S      +++ 
Sbjct: 656 HDVEEPEPPSGHTGSAKGNPRNVRAPKAKEKSAAKPPVQEDEPSENEIDSTPKRPSRESQ 715

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
            +  +T       R+R R    ++  D                      EP D       
Sbjct: 716 ATTPTTPPPHGTARKRARSPSDSETSDEEDDELPGPNTRAKKRRAAAEQEPRDEPPTLRR 775

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
              A    + +     P     ++   ++S     +++  
Sbjct: 776 STRAIKVAKRFGQEDVPSVIQRIQKPGANSKGSTTRSKSR 815


>gi|291238096|ref|XP_002738967.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 1326

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 71/247 (28%), Gaps = 25/247 (10%)

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
              +    +L   +E + +    N+           LLN+++  + E E R         
Sbjct: 537 KYDAERDKMLHRHDEEMNKLLQQNLTPEQMQQKKAELLNKQQIELAELEKRL-------A 589

Query: 555 GIELADKLFYIE----KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
                 +   ++    + +  +  +   H          +  +   V  +EA+    + E
Sbjct: 590 EERRHQEQEALQDWELRYARAKLDLKEKHYQEYAEALRKFLSDKSNVSAEEAMKAAQQLE 649

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH--------DAGVVSDVSSIQNVI-- 660
            ++   +    E    + R+     RR +   D          DA    +    +  +  
Sbjct: 650 DVKRRLERERKENEDRLKRESEEFERREKRKFDESISAYEKQLDAESRKEKERTERSVAA 709

Query: 661 --DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS--SDPIVKKT 716
                 ++  E        L      G T+     I      ++    +   +D +  ++
Sbjct: 710 LNKRKEELLQEKQQKMKEQLENLKGQGATQEEQDRIMEEHQKDIAKLTNKMDADRLRMQS 769

Query: 717 RWWKRRK 723
              +R +
Sbjct: 770 GLQERLR 776


>gi|326479654|gb|EGE03664.1| hypothetical protein TEQG_02695 [Trichophyton equinum CBS 127.97]
          Length = 6467

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 12/164 (7%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                +   L     G   +     G  +  ++  PS    +E   ++   +     E   
Sbjct: 4097 GETHVEQPLLNQGAGKDQETPHLEGEPIPKETGRPSETLAVEPSTEESPAIGNDLPEQHT 4156

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
            D   +           ++R++R+ +  A+   + G   +  S ++ +D++    + P + 
Sbjct: 4157 DKPLSAKE--------RKRKKRQEKAAASLEDEPGAKEESVSRESTLDETLGTELIPEER 4208

Query: 674  TNHNLLE----NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            T    L            E+        + PE     S S P+ 
Sbjct: 4209 TPEKPLSAKEKKKKKKNQEDQAAGEEFFAKPEEVPGTSESMPVE 4252


>gi|326470736|gb|EGD94745.1| hypothetical protein TESG_02250 [Trichophyton tonsurans CBS 112818]
          Length = 6467

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 12/164 (7%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                +   L     G   +     G  +  ++  PS    +E   ++   +     E   
Sbjct: 4097 GETHVEQPLLNQGAGKDQETPHLEGEPIPKETGRPSETLAVEPSTEESPAIGNDLPEQHT 4156

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
            D   +           ++R++R+ +  A+   + G   +  S ++ +D++    + P + 
Sbjct: 4157 DKPLSAKE--------RKRKKRQEKAAASLEDEPGAKEESVSRESTLDETLGTELIPEER 4208

Query: 674  TNHNLLE----NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            T    L            E+        + PE     S S P+ 
Sbjct: 4209 TPEKPLSAKEKKKKKKNQEDQAAGEEFFAKPEEVPGTSESMPVE 4252


>gi|109073769|ref|XP_001098928.1| PREDICTED: biorientation of chromosomes in cell division protein
            1-like [Macaca mulatta]
          Length = 3048

 Score = 41.5 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 23/247 (9%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
            ++   + S  +       +  A  I  H+       +  ++R        +  +S    +
Sbjct: 2722 NEEIHSKSYNKGEISSDRKDNAEAISSHSVEADPKEVEEEERHMPKRKRKKHYLSSEDEL 2781

Query: 555  GIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
                      IE                     +    K  S++ + +     E      
Sbjct: 2782 DDNPDVLDSRIETAQRQCSETEPHDTKEENSRDLEELSKTSSETNSTASRVMEEKDEYSS 2841

Query: 602  ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHDAGVVS 651
            +     K E  +D       E+   +I+++R R R          +    TD   A V  
Sbjct: 2842 SETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKMKDDSKTDTGIATVEQ 2901

Query: 652  DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
               S +  +  + +   E +++   ++  +     T              +  S+ +   
Sbjct: 2902 SPPSSKLKVMPTDESNKETANLQERSISNDDGEEKTVASVRRRGRKPKRSLTVSDDAESS 2961

Query: 712  IVKKTRW 718
              ++ R 
Sbjct: 2962 EPERKRQ 2968


>gi|67536854|ref|XP_662201.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4]
 gi|40741209|gb|EAA60399.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4]
 gi|259482571|tpe|CBF77179.1| TPA: nuclear condensin complex subunit Smc4, putative
           (AFU_orthologue; AFUA_2G02170) [Aspergillus nidulans
           FGSC A4]
          Length = 1476

 Score = 41.5 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 12/161 (7%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--------CVWQDEALLPIPKSESLEDI 615
            I +G P +           ++       N+             +E   P+P+ ++    
Sbjct: 3   SIARGRPSRRSAAARKSYVEETSESEDPGNVTPTPSYPDGDDDGEEEFTPVPQKKAPARA 62

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
               ++ E+      RR RR R    TD      V+D S     I  + D     S  T+
Sbjct: 63  SRRRMTSETPKAQAPRRSRRSRTAEPTD---TSSVADPSEDGESIASAQDESESASPNTS 119

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                 G H   E+   +           S  SS P  +K+
Sbjct: 120 VKRKSMG-HEEPESPSRTATMKRKSMARKSRVSSTPNPEKS 159


>gi|149599239|ref|XP_001520693.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 1068

 Score = 41.5 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 3/150 (2%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G P                + S  K      + E+        S  + Q     +     
Sbjct: 784 GDPGSPPPQRQQGASPAPPSFSGKKRNRHSGETESQSGPEAESSPGNGQGTEPRQGKKRR 843

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            R+R      RRPA        ++                    +  + N    G+   T
Sbjct: 844 RRRRHGEDGHRRPAAG---PESLAWEDRAGRGDGSRGARREAEPESRDENQEPGGSQAET 900

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                        + E     S+P    + 
Sbjct: 901 PAEAPKKNKKRKRDSEQEAEESEPRPTPSG 930


>gi|315222137|ref|ZP_07864046.1| translation initiation factor IF-2 [Streptococcus anginosus F0211]
 gi|315188763|gb|EFU22469.1| translation initiation factor IF-2 [Streptococcus anginosus F0211]
          Length = 940

 Score = 41.5 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/128 (9%), Positives = 41/128 (32%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
           T  K  ++++  +  K +    + E  +    ++             +     +R +++ 
Sbjct: 72  TAVKETTEAEKKAEPKAVAPKQKSEVEMKSAPAKPKSRNFKAEREARAKEQAERRNKQQD 131

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            R     + D     + +   N  + + +     ++  ++    N  +   E    +I  
Sbjct: 132 NRPQKQQNGDKRNRDERNQRNNRSNQNRNDRGNRNEQRDNRNHRNQDNRRQEQNRSNIAN 191

Query: 697 VSTPEMES 704
            + P+   
Sbjct: 192 QNRPQTNQ 199


>gi|325114325|emb|CBZ49882.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1552

 Score = 41.5 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 9/167 (5%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E     +       +     +    D+      +DE      + E++E            
Sbjct: 1264 EGQKGEEDEKERNGEEDEKERNGEEDEKERNGEEDEKETNGEEDETVEGELRPEDEGRRK 1323

Query: 626  GVIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE--- 680
            GV  +R +R R  R R   + +      +  + +  +++      E              
Sbjct: 1324 GVSERRAKRGRVARHREEKEGNGVEETVEQENKEATLEEMTRDQEEAEGGGEGTGEPATE 1383

Query: 681  ----NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  A    + + VS+   +    +SS+S+  P  ++T   ++RK
Sbjct: 1384 YTHCPSAEQGEDAHAVSVDKGAAASEDSSSSAQTPAEEETGKRRKRK 1430


>gi|221485909|gb|EEE24179.1| trichohyalin, putative [Toxoplasma gondii GT1]
          Length = 2236

 Score = 41.5 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 13/231 (5%)

Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
            I+R  EE  +        +      +    N+ +    + E     +I   +  E    
Sbjct: 314 EIVRLEEEKGVLEKT----LSEERKKLEEERNEWQMHRAQMEKGKQEAIEKAVEEERKKM 369

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD----EALLPIPKSESLEDIQD 617
               E+    +A    G +   +       K +E   ++     A     K E++E   +
Sbjct: 370 EQEREEWQKHRAEEEKGKQEAIEKAVEEERKKVEQEREEWQKHRAEEEKGKQEAIEKAVE 429

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
               +        ++ R    R   +  +  V  +    +   ++      E        
Sbjct: 430 EERKKMEQEREEWQKHRAEEERGKQEAIEKAVEEERKKTEQEREEWQKHRAEEEKGKQEA 489

Query: 678 LLENGAHGFTENYDVSIP-----PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           + +       +                   + +   +    +K    +R +
Sbjct: 490 IEKAVEEERKKMEQEREEWQKHRAEEEKGKQEAIEQAVKEERKKMEQEREE 540



 Score = 38.4 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/231 (7%), Positives = 54/231 (23%), Gaps = 16/231 (6%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
              EE   +  A    V            + +    E E     +I   +  E       
Sbjct: 445 HRAEEERGKQEAIEKAVEEERKKTEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQE 504

Query: 565 IEK----GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            E+     +  +       +     +    ++  E   +  A     K E++E       
Sbjct: 505 REEWQKHRAEEEKGKQEAIEQAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEER 564

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            +        ++ R    +   +  +  V  +   ++   ++      E        + +
Sbjct: 565 KKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREEWQKHRAEEEKGKQEAIEK 624

Query: 681 NGAHGFTENYDVSIP------------PVSTPEMESSNSSSDPIVKKTRWW 719
                  +                     +  +  +     + + ++   W
Sbjct: 625 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKARAVEEERNKMEQEREQW 675


>gi|195447866|ref|XP_002071405.1| GK25779 [Drosophila willistoni]
 gi|194167490|gb|EDW82391.1| GK25779 [Drosophila willistoni]
          Length = 1170

 Score = 41.5 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 3/156 (1%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           +   +EK    +   +  +      +    DK IE   + +      K + LE  +   +
Sbjct: 383 EEIVVEK---DEETKDDDNTDKKKEEQNEVDKVIENEEEKQKETDEEKEKPLEAEKVEEI 439

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             +   V  K+  + +      +        +  + Q    +      E        + E
Sbjct: 440 IGDDKEVEDKQEPQEQPEPVNEETEIIKNNDETETEQEQKPEPEADKAEEETQVIEQVAE 499

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                  E            + E   + +D   K T
Sbjct: 500 TEPELTQETEMQIQAEPEPEKAELEENKADEAEKDT 535


>gi|13195656|ref|NP_077192.1| smoothelin-like protein 1 [Mus musculus]
 gi|81903156|sp|Q99LM3|SMTL1_MOUSE RecName: Full=Smoothelin-like protein 1; AltName: Full=Calponin
           homology-associated smooth muscle protein; Short=CHASM
 gi|12805667|gb|AAH02317.1| Smoothelin-like 1 [Mus musculus]
 gi|123233595|emb|CAM23315.1| smoothelin-like 1 [Mus musculus]
 gi|148695357|gb|EDL27304.1| smoothelin-like 1 [Mus musculus]
          Length = 459

 Score = 41.5 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 2/170 (1%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              LA +   +++                    P  D   E    +       +++  + 
Sbjct: 131 EAMLASEKQKVDEKETNLESKEKSDVNDKAKPEPKEDAGAEVTVNEAETESQEEADVKDQ 190

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDI 673
            +  +   +        +       P T+  + G  ++      VI  S + + E P+D 
Sbjct: 191 AKPELPEVDGKETGSDTKELVEPESP-TEEQEQGKENESEERAAVIPSSPEEWPESPTDE 249

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +  A   T     S    S  E+  S +   P  KK      R+
Sbjct: 250 GPSLSPDGLAPESTGETSPSASESSPSEVPGSPTEPQPSEKKKDRAPERR 299


>gi|298710406|emb|CBJ25470.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1106

 Score = 41.5 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 46/157 (29%), Gaps = 2/157 (1%)

Query: 564 YIEKGSPVQAL--VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            + +    + +    +   V   S+  S D N    + D+           E        
Sbjct: 686 SVHRSQTKERIQLDLSRTAVRGSSRGSSNDSNASLGFDDDDDAGRSNGTKDEPRASKARG 745

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             + G  + +  R   ++ +    +    +      +    +       +  +  +    
Sbjct: 746 NGAQGRDKGKAPRGDEKQSSGAKKNTSSNAPPHRNGSSGPSATAENAGKAGASKSDFTRT 805

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
              G   +  ++    +  E E++ +S  P VK T+ 
Sbjct: 806 RTRGRNASNALARTSSTAVEAEAATASKKPGVKNTKQ 842


>gi|296234004|ref|XP_002762257.1| PREDICTED: hypothetical protein LOC100394361 isoform 2 [Callithrix
           jacchus]
          Length = 727

 Score = 41.5 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 33/156 (21%), Gaps = 1/156 (0%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G       +       D          +   +  +  P  +         +         
Sbjct: 396 GKDRDRSQSESPNKQRDCSRSRSPSEKKDHTRGRSRSPSQERARGRSRSPSQERARGRSR 455

Query: 628 IR-KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              + R R R R P+ +       S           S           + +         
Sbjct: 456 SPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSR 515

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           + + + +     +P  E     S    K++     R
Sbjct: 516 SPSQERARGRSRSPSQERDRGRSGSPSKESERRHSR 551



 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 40/150 (26%), Gaps = 1/150 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +   ++  K    SQ+ S +K  +C            +           +   +   
Sbjct: 386 ERDRRGSSSPGKDRDRSQSESPNKQRDCSRSRSPSEKKDHTRGRSRSPSQERARGRSRSP 445

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + R R R R P+ +       S           S           + +         + 
Sbjct: 446 SQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSP 505

Query: 689 NYDVSIPPVSTPEMESSNS-SSDPIVKKTR 717
           + + +     +P  E +   S  P  ++ R
Sbjct: 506 SQERARGRSRSPSQERARGRSRSPSQERDR 535



 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 36/158 (22%), Gaps = 4/158 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +          G       +            +       P  E       +   E + G
Sbjct: 429 RSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARG 488

Query: 627 VIR---KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             R   + R R R R P+ +       S           S     +     + +      
Sbjct: 489 RSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRSGSPSKESERR 548

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           H  + + + +     +P  +  +        K R   R
Sbjct: 549 HSRSPSQERARGCSRSP-SQERDHGRSGSPSKERERGR 585



 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 40/154 (25%), Gaps = 1/154 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +   +  K      + S  K+ +    +        S S    +    +   +   
Sbjct: 374 ERSHSPSRSSSKERDRRGSSSPGKDRDRSQSESPNKQRDCSRSRSPSEKKDHTRGRSRSP 433

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + R R R R P+ +       S           S           + +         + 
Sbjct: 434 SQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSP 493

Query: 689 NYDVSIPPVSTPEMESSNS-SSDPIVKKTRWWKR 721
           + + +     +P  E +   S  P  ++ R   R
Sbjct: 494 SQERARGRSRSPSQERARGRSRSPSQERARGRSR 527



 Score = 37.3 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 4/142 (2%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P +   +T  +  S SQ  +  ++     +         S+     +    S+E      
Sbjct: 419 PSEKKDHTRGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRS 478

Query: 630 K----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
           +     R R R R P+ +       S           S           + +   +    
Sbjct: 479 RSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRS 538

Query: 686 FTENYDVSIPPVSTPEMESSNS 707
            + + +       +P  E +  
Sbjct: 539 GSPSKESERRHSRSPSQERARG 560


>gi|325911068|gb|ADZ45262.1| pneumococcal surface protein C [Streptococcus pneumoniae]
          Length = 729

 Score = 41.5 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           ++      +           +       V +       L N K     + E         
Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
            +   +   +   E+  P            +       D         E  LP P  +  
Sbjct: 243 KLKEAVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           + + +            K ++   RR   T+ +    +    S   V +   ++  E + 
Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + +    N A    E+       +   + +          KK     +RK
Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404


>gi|242780642|ref|XP_002479639.1| hypothetical protein TSTA_025240 [Talaromyces stipitatus ATCC
           10500]
 gi|218719786|gb|EED19205.1| hypothetical protein TSTA_025240 [Talaromyces stipitatus ATCC
           10500]
          Length = 186

 Score = 41.5 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 43/170 (25%), Gaps = 4/170 (2%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
               +L  +  + E  +  +          S+ QA +  +       ++           
Sbjct: 4   QSSEDLQSESVHDEANTTSEEPRTEEAVPDSEPQAETEMETETTEKTEQDRELTTIQRPA 63

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                   + E     R+  R+   +                   + ++ S     E   
Sbjct: 64  GPRDPPPSAIEDARAARRESRKGNEKEDRNQRPARRPTGPRDRPPSTVEKSRAARRESKA 123

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            T        +           PP S P    S  S   ++ + R W+RR
Sbjct: 124 KTKDKHQRPVSRLAG----PKDPPPSKPREFHSTVSDRSLMYRKRIWRRR 169


>gi|198421268|ref|XP_002122655.1| PREDICTED: similar to zonadhesin, partial [Ciona intestinalis]
          Length = 2534

 Score = 41.5 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 61/665 (9%), Positives = 184/665 (27%), Gaps = 37/665 (5%)

Query: 89   LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148
            L +  N +Q + +  +       V +      E  + +A+     +    +         
Sbjct: 1382 LDERKNASQEERDQSSASAEEDKVKMSKTIDDELDSMVASGLITDDVREQLKQKIINQER 1441

Query: 149  VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208
              + +     ++  K  R    +   K  ++L  +  +E+              A     
Sbjct: 1442 DLNERMEQKREMQIKSMRDRMAERKKKRMKMLQEKHEREKVELGDDVPDLEERHAAERDA 1501

Query: 209  LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268
            L       E    +  N   +   KE+   +   A   +  +    +    E+   ++  
Sbjct: 1502 LEAELDAEEYSVEREINETIQVEHKELLSQIHKSAITELATQENMDADKHQELLDKYQRG 1561

Query: 269  MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328
            +  ++     A +      +       +        +   E ++  ++   E        
Sbjct: 1562 LDNYE-HLNQAKHLKHAQDLKARLAARRTRRAAEIQRSEEEKLLLKKREEEERMIREMEE 1620

Query: 329  MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388
                    ++ +    I   +  E         E            + E     +V    
Sbjct: 1621 KRREEEKRKEEDGGIMIPHINITEGHEVQALAREQERQQA------ENETEKLAEVERLN 1674

Query: 389  STREHCIEDTALQTNLEAAEEIARQ-LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447
               E   +        +  EE  +    ++D     +    D+ +++  + +    +E  
Sbjct: 1675 HDLEKKEQKEEKSLERKLQEEEDKIKSEMKDKHDAEIRARTDLTDEQMQQLMAAHQQELD 1734

Query: 448  KKDR--ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
            + DR   + Q    +       +R+  ++S+L +  +     +     +  S V     +
Sbjct: 1735 ELDRGLEKQQNKQRAALRDRLAARRAKKTSLLRNKQETDAKKEEIEQRKEMSQVKAKSAK 1794

Query: 506  SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELA--DKL 562
              E+  +          +   V+  +L Q++   + + EA F +   +++   L      
Sbjct: 1795 EAEKAAIIEGIQQNGAESSHKVIQRVLEQRQNQEMKDLEAEFALKKKIILDECLQDIRDQ 1854

Query: 563  FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV-----WQDEALLPIPKSESLEDIQD 617
            F  +  + +    +   ++ ++  +P   +            +   L     +  ++I++
Sbjct: 1855 FRKKMDAMLNRHESELEQLENEGLSPDLLEARREELFGRQKDEIRSLEQNHKKECKEIEE 1914

Query: 618  NIVSEESTGVIRKRRRRRRRR---------------RPATDHHDAGVVSDVSSIQNVIDD 662
            +  +  +    + +   + +                  +    +       S+ Q +  +
Sbjct: 1915 HATAGWNLDFAKAKYELKEKHYQEYAQTVRELAPSVAQSAQQAEQSAQRLESTKQRLEQE 1974

Query: 663  SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS----DPIVKKTRW 718
              +   + +        E       E  D         + E   +          K+   
Sbjct: 1975 RAEAEKKFAQERLELEEEGKRRIAMEMEDFEKQLAEETKAEKLKAEKTLQTLEKRKEKML 2034

Query: 719  WKRRK 723
              +R+
Sbjct: 2035 KDKRE 2039


>gi|237832441|ref|XP_002365518.1| hypothetical protein TGME49_068010 [Toxoplasma gondii ME49]
 gi|211963182|gb|EEA98377.1| hypothetical protein TGME49_068010 [Toxoplasma gondii ME49]
          Length = 4032

 Score = 41.1 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 6/145 (4%), Positives = 30/145 (20%), Gaps = 5/145 (3%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            +   ++                 + QA +         +  +      +   E+  + + 
Sbjct: 1970 EEDVVDSTRTEDDEQRDSETGNEEEQADTEAPERAEEPKRLSADRSVATAKNEENTEELG 2029

Query: 621  SEESTGVIRKRRRRRRRRRPATDHH-----DAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
              +     ++  + +       D       +      +        +      E      
Sbjct: 2030 ELQERREPKREEKGKESGTALRDEDAEFLGENAERKGLDEANETATEKQKSGQETETQKK 2089

Query: 676  HNLLENGAHGFTENYDVSIPPVSTP 700
             +       G  ++  +     +  
Sbjct: 2090 DDKGAESVAGGQKDACLDKEEAAEK 2114


>gi|308510891|ref|XP_003117628.1| CRE-MEC-2 protein [Caenorhabditis remanei]
 gi|308238274|gb|EFO82226.1| CRE-MEC-2 protein [Caenorhabditis remanei]
          Length = 1293

 Score = 41.1 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 2/123 (1%)

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
             +      E     +    +E +  +    + ++ + +  +        ++  S +  I
Sbjct: 685 SEVGEHESVEMKTVEKKKEKAEATITLTMVSKDKKTKSQEKSKQEKHHETTESDSSKETI 744

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                  +    +   +  E+     + N     PP  T         ++   KKT   +
Sbjct: 745 RKDSTEKISKEKVKKQSSKEDTTDKDSRNE--GRPPSGTTHSSVRKLKAESFSKKTGHGE 802

Query: 721 RRK 723
            RK
Sbjct: 803 PRK 805


>gi|189195316|ref|XP_001933996.1| cupin domain containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979875|gb|EDU46501.1| cupin domain containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 685

 Score = 41.1 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 51/177 (28%), Gaps = 15/177 (8%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              +  +     + S      +   ++G DS   + +       ++  ++P P  E  + 
Sbjct: 184 EESVVQEEITANEASVAAVKESFVAQIGEDSINEAEEVEDLVDQEESEIVPEPVKEPAKR 243

Query: 615 IQDNI-------VSEESTGVIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDM 666
            +            E++     ++R R    +  A+     G  S  ++ Q         
Sbjct: 244 GRKRKSDAVNISEEEQAVVEQPRKRGRPPGAKATASASEKTGKKSAPAAAQRRRSQRVSD 303

Query: 667 YMEPSDITNHNLLENG-------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             EP        +++                    PP   P+ E  ++++    K  
Sbjct: 304 ISEPDPSIVEAPVDDSIDQSEQIEEAPVAPKRRGRPPRVQPDAEEEHTATAKPAKND 360


>gi|195035285|ref|XP_001989108.1| GH10228 [Drosophila grimshawi]
 gi|193905108|gb|EDW03975.1| GH10228 [Drosophila grimshawi]
          Length = 5820

 Score = 41.1 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 39/171 (22%), Gaps = 12/171 (7%)

Query: 559  ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                +       I +G+  +           DS   S                     S 
Sbjct: 1576 ESPDYDDIPVSKIPRGANDEDKDAEAGDETVDSVPDSAGDAASTPSSRRDRKRSTARSSR 1635

Query: 613  EDIQDNIVSEESTGVI----RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
             +                  +  ++RR R R   +        D +   +   DS     
Sbjct: 1636 RNATSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPSPPPDSELDSN 1695

Query: 669  EPSDITNHNLLE--NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +     N    +  +       + + S+   S  + E  ++S +       
Sbjct: 1696 KRRSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKEKKSASVNAANSNAG 1746


>gi|148683989|gb|EDL15936.1| leucine rich repeat containing 59, isoform CRA_b [Mus musculus]
          Length = 376

 Score = 41.1 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%)

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + R R+RR     +              +       +   E          +  +  
Sbjct: 221 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 280

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
             E         +      S     P  K TR W
Sbjct: 281 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 314


>gi|119570347|gb|EAW49962.1| ligand-dependent corepressor, isoform CRA_b [Homo sapiens]
          Length = 1557

 Score = 41.1 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 34/163 (20%), Gaps = 1/163 (0%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                ++         +            +  +              P +           
Sbjct: 1391 PKAEVQSKRKRTEGSSPPDSKNKGPTVKASKEKHADGATKTPAAKRPAARDRSSQPPKKT 1450

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            S +   V   ++   +   P+    +        SI +             + +     +
Sbjct: 1451 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGAGESS-SRPQK 1509

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +     + P   TPE  ++        K      +R+
Sbjct: 1510 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDCSHSKRR 1552


>gi|195574499|ref|XP_002105226.1| GD21371 [Drosophila simulans]
 gi|194201153|gb|EDX14729.1| GD21371 [Drosophila simulans]
          Length = 1003

 Score = 41.1 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 38/159 (23%), Gaps = 4/159 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                                   + E   +D        S   +         E +   
Sbjct: 628 DSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDSRDRKREASPNWKREDSPGR 687

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN----LLENGAH 684
           +++    R+R  + D           S     +DS    ++ SD    +      E+   
Sbjct: 688 KRKDSANRKREDSQDKKIQDSKRQEYSAGKKREDSPSKKLKDSDRKRQDSPVKRQESPGR 747

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              ++             ES++      + K +    R+
Sbjct: 748 KRQDSPGRKRDSPDKRAAESADKKQQDSLAKRQDSPGRR 786



 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/142 (7%), Positives = 38/142 (26%)

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
                     ++     + ++     +       QD+     ++   ++R    R+R  +
Sbjct: 609 SPSGDRRRQQRSRSQNRRQDSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDS 668

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            D       +                 +  D  +  + ++    ++        P    +
Sbjct: 669 RDRKREASPNWKREDSPGRKRKDSANRKREDSQDKKIQDSKRQEYSAGKKREDSPSKKLK 728

Query: 702 MESSNSSSDPIVKKTRWWKRRK 723
                    P+ ++    ++R+
Sbjct: 729 DSDRKRQDSPVKRQESPGRKRQ 750


>gi|195469729|ref|XP_002099789.1| GE16687 [Drosophila yakuba]
 gi|194187313|gb|EDX00897.1| GE16687 [Drosophila yakuba]
          Length = 5096

 Score = 41.1 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 48/160 (30%), Gaps = 9/160 (5%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            EK        +   K    S+  S   ++    +DEA     +S        + ++ +  
Sbjct: 2213 EKSKEESRRESIVEKSALASKEASRPASVAESSKDEAEKSKEESRRESVADKSPLASKEA 2272

Query: 626  GV---------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                           + +   RR +     A    + S   +V + S D   +  + +  
Sbjct: 2273 SRPASVAESVKDEAEKSKEESRRESIVEKSALASKEASRPASVAESSKDEAEKSKEESRR 2332

Query: 677  NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              + + +   ++          + + E+  S  +   + T
Sbjct: 2333 ESVADKSPLASKEASRPASVAESVKDEAEKSREESRREST 2372



 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 37/160 (23%)

Query: 557  ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
            E++     IE          +       S+  S  +++    +DE +    +       +
Sbjct: 1725 EVSRPESVIESMKDESEKPGSHRDSPLASKEASRPESVVESVKDEPIKSTEELRRESVAE 1784

Query: 617  DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                        R   +   R   A +     V       Q     +      P  +   
Sbjct: 1785 SVKADSTKDEKSRPASKDISRPDSAAESVLDAVQKSAERSQPESATASRDVSRPESVAES 1844

Query: 677  NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +                +S P+  +   S      ++
Sbjct: 1845 EKDDTDKPESVVESVRPSGVISKPDESAKPESRRESSTES 1884


>gi|238505214|ref|XP_002383836.1| transcriptional regulator (Cti6), putative [Aspergillus flavus
           NRRL3357]
 gi|83773510|dbj|BAE63637.1| unnamed protein product [Aspergillus oryzae]
 gi|220689950|gb|EED46300.1| transcriptional regulator (Cti6), putative [Aspergillus flavus
           NRRL3357]
          Length = 611

 Score = 41.1 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 4/161 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624
           E+  P    +       S S + ++ +  +             ++    +      +E  
Sbjct: 270 EETKPASEEIAARRGKRSRSDSEAHKQAAKRQRTSSPSPGATSNKQSNPVSQPASEDEKA 329

Query: 625 ---TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              T   R++R   R +            ++     N      D        ++H  +  
Sbjct: 330 KAATNGTRRQRAASRSQHNKETKDVEEPEAEQPDATNRRKGRSDRRKGDGTDSDHEAVSP 389

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                T        P +T        S     K  R   RR
Sbjct: 390 TKTVATNLEPPQPSPDTTAPAPEPAPSRPSTRKSGRPPARR 430


>gi|289617053|emb|CBI56121.1| unnamed protein product [Sordaria macrospora]
          Length = 11106

 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 41/173 (23%), Gaps = 18/173 (10%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +  V    ++    +   +D        +  +   P+  S      +   EE     
Sbjct: 857  EQYERRVREAREMQYKEERRMHDARYRAERDNMVVDIEPRHRSTSRQSRDESPEEKRSDK 916

Query: 629  RKRRRRRRRRRPAT-------------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             K   R    RP               D     V     S+     +S    + P     
Sbjct: 917  GKEIDREEHHRPKPQPVTIINERDVPKDEPKPKVEEPTRSVPGEKRESMGDTLNPEPKKP 976

Query: 676  HNLLENGAHGFTENYDVSIPPVSTPEMESSNS-----SSDPIVKKTRWWKRRK 723
                       T      +      E E +       +++   KK +  + RK
Sbjct: 977  SKEERRAKRAETRRLLAEMQKELELEKERARKLAELEAAEQQQKKPKEEEPRK 1029


>gi|95007074|emb|CAJ20290.1| hyothetical protein [Toxoplasma gondii RH]
          Length = 1821

 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 66/256 (25%), Gaps = 30/256 (11%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
            E +R+   ++  E          G G ++++      I     E   +    +      +
Sbjct: 1368 EAARKGTETTEGEGLGGDREDNCGEGQLKAKE-----INEGDREKAERTEIGDCGEAGGA 1422

Query: 526  DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
              +  +  +KR    E E +                   I K             + +  
Sbjct: 1423 GPMSDVPAEKRRGRDEKEEK------------------QIRKLPLETRRDPEERTMEAQR 1464

Query: 586  QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR-------RR 638
               S ++  E   +       P  E+L+  +     E       K +++         R 
Sbjct: 1465 ALQSDNQKRELREEKRRSSEKPSREALKGEEGETGREGEQDDTPKEQKKGNEELVAGVRG 1524

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            +   D+      +     +     +     E   +      +  +H  T +  +      
Sbjct: 1525 KGVEDNPAEEGEASRKVTEKQRSINLGREKEGQTLLAQKQKKRRSHQATHSKSLDSEAAH 1584

Query: 699  TPEMESSNSSSDPIVK 714
                ++S   +    K
Sbjct: 1585 EERRDTSGCEATAAKK 1600


>gi|242794820|ref|XP_002482454.1| RNA polymerase II transcription elongation factor (Ctr9), putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218719042|gb|EED18462.1| RNA polymerase II transcription elongation factor (Ctr9), putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1198

 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 7/179 (3%)

Query: 533  NQKRATI-VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
            N  R TI  + E              L  +     + + ++       K           
Sbjct: 937  NMGRNTISKQLERSIQNQKEYEDKNALKLQQARAAREAELKRREEEVRKAQELENERK-R 995

Query: 592  KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA-----TDHHD 646
            +  E   +         ++  E+ +    +E +T      R++R+R+  +         D
Sbjct: 996  RLAEERQRIIEETQRLAAKRAEEQRAREAAELTTDSETGERQKRKRKASSGRRRKRRDED 1055

Query: 647  AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
             GVVSD  SI     D       P                 +     +   S  E+E+ 
Sbjct: 1056 DGVVSDGRSISVARSDDDGTAPAPKRRRRLERRGGAKEKLGKYKSSELVVDSDEELENE 1114


>gi|119578297|gb|EAW57893.1| splicing factor, arginine/serine-rich 2, interacting protein,
           isoform CRA_b [Homo sapiens]
          Length = 1398

 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910

Query: 720 KRRK 723
            R +
Sbjct: 911 SRER 914


>gi|126436905|ref|YP_001072596.1| hypothetical protein Mjls_4334 [Mycobacterium sp. JLS]
 gi|126236705|gb|ABO00106.1| conserved hypothetical protein [Mycobacterium sp. JLS]
          Length = 392

 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 2/132 (1%)

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                        I +       +             +RR R +  R A +  +      
Sbjct: 250 PSRSRHNRPPETEIIEPVVDRPRRSRSTPRTPESPEPRRRSRTQAPREAREPRETRDARK 309

Query: 653 VSSIQNVID--DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
           +   +      D  +   E S   +           T N   S  P+S      ++    
Sbjct: 310 LPPRERRSSSYDRPERRTERSRRLDDYEPYEPLEPHTRNGSSSHHPISRVRYRGADEDDQ 369

Query: 711 PIVKKTRWWKRR 722
               ++R   RR
Sbjct: 370 RSEYRSRPRARR 381


>gi|222824189|ref|YP_002575763.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
 gi|222539411|gb|ACM64512.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
          Length = 517

 Score = 41.1 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 4/190 (2%)

Query: 39  KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98
            G+     V+ +EP    AFVD G +  GFL   EI  D  +   + +  + +   +   
Sbjct: 286 VGDTIKVTVSNIEPY--GAFVDLGNDIEGFLHISEISWD--KNAKNPKDYISEGQELDVE 341

Query: 99  DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158
             E  A +               +    ++   +  + S+ S  N           G   
Sbjct: 342 VIEINAKERRLRVSLKNLLAKPFDEFLKSHKVGDVVKGSVTSVTNFGAFVKIANLEGLLH 401

Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218
           +    + R    +++ K   ++ V+I+K ++ N+  +++T         V        + 
Sbjct: 402 NEDASWNRNDKCKDMYKVGDVIEVKIIKLDKENQKISLSTKELQKSPVQVYAQKHQVNDI 461

Query: 219 ISRKITNPVD 228
           IS KI +  D
Sbjct: 462 ISGKIRDIKD 471


>gi|255574021|ref|XP_002527928.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
 gi|223532703|gb|EEF34485.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
          Length = 960

 Score = 41.1 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 8/166 (4%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS-- 621
            ++     Q      + V          +N +              +  +D ++      
Sbjct: 744 KVKSDEDGQHESKRSYSVKDIKDTELNRENEKGDGNRRKQDETHSRKEKKDDRNGSKEKV 803

Query: 622 -EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--- 677
            E+      K +    R+RP  D  +     +     N  +D         D  +     
Sbjct: 804 KEQGDKTGGKAKESELRKRPHLDVKEDRRELEKLHRSNAKEDDNRKRRRTKDKEDDRARH 863

Query: 678 --LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
               ++  H    +   S    ++ + +SS+ +SD   +KT   KR
Sbjct: 864 KPTNDSSKHKRRRSSSTSSRGRNSRDKDSSDEASDGSKRKTHSRKR 909


>gi|303232061|ref|ZP_07318764.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513167|gb|EFL55206.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 632

 Score = 41.1 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%)

Query: 28  LDFESEHK--KQIKGNI-----YLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77
           L+ E + K  + +K NI     Y   V ++ P    AFVD GG    G L   +I   
Sbjct: 447 LEVERQAKLAEALK-NINVGENYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499


>gi|301622634|ref|XP_002940630.1| PREDICTED: hypothetical protein LOC100494134 [Xenopus (Silurana)
           tropicalis]
          Length = 914

 Score = 41.1 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 5/158 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES-TGV 627
             V   +          + P   +          L P     S      +  + E+ +  
Sbjct: 470 EKVLRRLPGRLVTVVQERPPVARRQNRPKGDKGPLSPGDPQNSPPPSLQSDDTSEAGSPP 529

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG-- 685
            +++R R    +P  +   A  V+  SS+  V  D     +E    T  + L   +    
Sbjct: 530 PKRKRGRP--PKPKIESSPAQAVATGSSLSEVASDLDVSLLEKHGDTGLSPLGPSSELAP 587

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            T+   V+  PV   ++ S   S+  + K+ R    +K
Sbjct: 588 STKAAVVAGSPVPCTKLNSEIESAPSVEKRKRGRPPKK 625


>gi|303229902|ref|ZP_07316678.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515458|gb|EFL57424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 632

 Score = 41.1 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%)

Query: 28  LDFESEHK--KQIKGNI-----YLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77
           L+ E + K  + +K NI     Y   V ++ P    AFVD GG    G L   +I   
Sbjct: 447 LEVERQAKLAEALK-NINVGENYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499


>gi|259485856|tpe|CBF83234.1| TPA: Mis12-Mtw1 family protein (AFU_orthologue; AFUA_3G13950)
           [Aspergillus nidulans FGSC A4]
          Length = 596

 Score = 41.1 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 17/168 (10%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             + +   K  + ++ P      E   Q       P  +  ED  D++  ++       +
Sbjct: 85  SRITSKKQKASTSTEQPDLPAPEEPTPQPSPRRGRPPKKRAEDRSDDVARQKKASEGTGK 144

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG------ 685
           R+ R + + A +           + Q+   +         +      +E           
Sbjct: 145 RQTRGKTKNALEPEPEPKPHPHPNPQSERSERSTRKRGEEEQVQQVSVEKKRKKGRPSKS 204

Query: 686 ---------FTENYDVSIPPVSTPEMESSNSSSDPIV--KKTRWWKRR 722
                      E        ++ P  ++     +  +  KK+    RR
Sbjct: 205 QEEQRNGFVSPEQPQAGTATIALPVADTPVIQRNKEMRGKKSGKGSRR 252


>gi|313893418|ref|ZP_07826990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442059|gb|EFR60479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 632

 Score = 41.1 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%)

Query: 28  LDFESEHK--KQIKGNI-----YLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77
           L+ E + K  + +K NI     Y   V ++ P    AFVD GG    G L   +I   
Sbjct: 447 LEVERQAKLAEALK-NINVGENYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499


>gi|109127941|ref|XP_001097618.1| PREDICTED: retinoblastoma-binding protein 6 isoform 5 [Macaca
            mulatta]
          Length = 1791

 Score = 41.1 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E+S      
Sbjct: 1001 SEKDKRERDKPKTKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKIDGEREKSPRSEPP 1057

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1058 LKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPLKEEKVKKDYSKDV 1117

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1118 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1149


>gi|15602624|ref|NP_245696.1| translation initiation factor IF-2 [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|13431559|sp|P57873|IF2_PASMU RecName: Full=Translation initiation factor IF-2
 gi|12721057|gb|AAK02843.1| InfB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 833

 Score = 41.1 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 34/151 (22%), Gaps = 3/151 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---NIVSEE 623
           +    +            ++  +     E     E      ++E+ ED  D         
Sbjct: 118 RAEEAELRRKADELARQKAEELARKAAEEAKRYAELSEEDAENENSEDYADYHLTSTYAR 177

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                  RR+  R R        A              +S     +   +      + G+
Sbjct: 178 EAEDEEARRKENRNRGGKNKVAKAKKGGREDESSKTERESNRRNQKDGKMGKGKHAKKGS 237

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                    +        +  + + ++   K
Sbjct: 238 ALQQAFTKPAQAVNRDVVIGETITVAELANK 268


>gi|237835003|ref|XP_002366799.1| trichohyalin, putative [Toxoplasma gondii ME49]
 gi|211964463|gb|EEA99658.1| trichohyalin, putative [Toxoplasma gondii ME49]
          Length = 2238

 Score = 41.1 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 49/206 (23%), Gaps = 3/206 (1%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
              EE   +  A    V      +    N+ +    E E   G    +   +E   K   
Sbjct: 511 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEK--GKQEAIEKAVEEERKKME 568

Query: 565 IEKGS-PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            E+             K  +  +A   ++      ++E      + E  +        EE
Sbjct: 569 QEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEE 628

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
               + + R   ++ R   +      +      +    +      +          E   
Sbjct: 629 ERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREQWQKRQEEREKENEQDG 688

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSS 709
               +    +     T    ++    
Sbjct: 689 EEMKQKLQRARDENETARKRATELER 714



 Score = 38.0 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 59/227 (25%), Gaps = 8/227 (3%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
              EE   +  A    V      +    N+ +    E E     +I   +  E       
Sbjct: 379 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEKAVEEERKKMEQE 438

Query: 565 IEK----GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            E+     +  +       +     +    ++  E   +  A     K E++E       
Sbjct: 439 REEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEER 498

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD----SFDMYMEPSDITNH 676
            +        ++ R    +   +  +  V  +   ++   ++      +M     +    
Sbjct: 499 KKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEK 558

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + E       E  +         + +          ++ +  + R+
Sbjct: 559 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQERE 605


>gi|145235910|ref|XP_001390603.1| pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
           cdc28 [Aspergillus niger CBS 513.88]
 gi|134075050|emb|CAK44849.1| unnamed protein product [Aspergillus niger]
          Length = 1128

 Score = 41.1 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 2/158 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+   V +          +   P    ++  V  +       + +       +    ES 
Sbjct: 82  ERSDAVSSKKKYRLLEMEEDDVPDARGSLGPVNVEAERDRRRRRDKDRSNGRSSKDGESG 141

Query: 626 GVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                +   R+R R R                  +  DD +     P D    +  + G 
Sbjct: 142 RSRWEKDESRKRDRSREEESRDRPRTKKVRRRNADDFDDRWGDEEIPEDELYEDDEQAGE 201

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              + +    +   S     +++   DP  KK +  KR
Sbjct: 202 FEESPSKRSRLEDGSASPRSNASEELDPETKKEQDRKR 239


>gi|123974628|ref|XP_001313915.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895859|gb|EAY01029.1| hypothetical protein TVAG_295630 [Trichomonas vaginalis G3]
          Length = 1035

 Score = 41.1 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 44/190 (23%), Gaps = 13/190 (6%)

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
            +    + +     L       +K    +  +     +  ++  P  + +     +   +
Sbjct: 786 HQHKSPLCIEATNNLEIAD---DKNRFAKTEIKAVSLLKLNNSPPILEISPIREMEKPLV 842

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
               K                  +   R+RRRR      D  D  +    +     I+++
Sbjct: 843 TNSHKHHHHAKTLAGDEDTSPATLQPDRQRRRRSVGKTIDGSDNKIEQKKTPSPKKIEEN 902

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN----------SSSDPIV 713
            D   +             +           P     E               +   P  
Sbjct: 903 EDKEPQTLQPERKRRRRKVSVELQNFILKEEPKSKKAESSEEEPLFVPPIYLQNDEKPPE 962

Query: 714 KKTRWWKRRK 723
           K  R  K RK
Sbjct: 963 KLRRVRKHRK 972


>gi|302663873|ref|XP_003023574.1| hypothetical protein TRV_02321 [Trichophyton verrucosum HKI 0517]
 gi|291187577|gb|EFE42956.1| hypothetical protein TRV_02321 [Trichophyton verrucosum HKI 0517]
          Length = 812

 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 13/178 (7%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
           +++ +    +   +     K   V     T        +       I  +         P
Sbjct: 3   MTVLIENDEKAGQEN---AKREEVGIGAPTPRMKVYIHKMKMMYLMIGDIEVGRENTGRP 59

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS--------SIQNV 659
           + +S E I+    ++ES     K+R R R R     H      +             +  
Sbjct: 60  EIDSTE-IEAGHKAKESPATSPKKRDRERDREGHNRHRPRRDSTADEGGDRRLRDRRRRG 118

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST-PEMESSNSSSDPIVKKT 716
            D   +      D   H   E      + N    +       +++  N  +D  +KK 
Sbjct: 119 YDTDQEREHHDRDTRRHGRREKHTSNDSANSATVLLSSDALAQLDQLNRKADEDMKKK 176


>gi|195136017|ref|XP_002012391.1| GI21403 [Drosophila mojavensis]
 gi|193907769|gb|EDW06636.1| GI21403 [Drosophila mojavensis]
          Length = 376

 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 61/234 (26%), Gaps = 25/234 (10%)

Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548
           G GY R              E        + +  +  ++   L        V        
Sbjct: 35  GTGYQRRGDPRMGRDYYRPREERPPPKFKHTVHRSSINIAERL-----DGCVMLMKVEFT 89

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
           +I V I      + +  E  +P         K  +  Q+P  ++    V   +      +
Sbjct: 90  TIYVQIPQSRGAQPYVEEPQTPSTPPSMPVPKECAALQSPDEEEETREVQSPDEEEETRE 149

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
            +S ++ ++    +                    +        +   +Q+   +      
Sbjct: 150 VQSPDEEEETREVQSPVEEE-----------ETREVQSPDEEEETREVQSPEGERRQWGA 198

Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           E S+  + +  +      +              ++   ++ D   +   WW RR
Sbjct: 199 ESSEDQSPSRGQGDGRERSPFAAP---------LDPETAARDEGRRSPSWWTRR 243


>gi|183979254|dbj|BAG30788.1| similar to CG13676-PA [Papilio xuthus]
          Length = 1074

 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 32/141 (22%), Gaps = 2/141 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G P +      +    +   P      E     E   P  +        +    E+   
Sbjct: 256 QGRPARPAKRRPYDEYDEKYEPRPRPRDESEDYAEERRPYDRRPGKRPYLERRPYEDEDR 315

Query: 627 VIRKRR--RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
           +  +R   +  RR     D  +                            N  + + G  
Sbjct: 316 MTERRPNYKGGRRPGRPRDTEEDQYKPVDEDRPRAAPRDQKRNEYRPRDKNRPIDDMGDR 375

Query: 685 GFTENYDVSIPPVSTPEMESS 705
              +     +P    P  ES 
Sbjct: 376 AQEDESSRDVPREDRPRSESR 396


>gi|323507745|emb|CBQ67616.1| conserved hypothetical protein [Sporisorium reilianum]
          Length = 965

 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 58/232 (25%), Gaps = 20/232 (8%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +     +     R  +    +  A  +  +        L  ++R  +++   +  +S  
Sbjct: 271 SMLPAEFLDKLAERRSDRDAARAQAQQLFSN--------LKEEERQALLDKSTKSKISAT 322

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           V +                         K  +   + S    I+    D ++      + 
Sbjct: 323 VAVDKPAPS----------SSTPSKVKAKANAAGTSASQPIAIDDDLDDGSVADTEHDKP 372

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                 +   + S+     +   +R    A     +   S          +  ++  E  
Sbjct: 373 APSTPISHKRKSSSSTSTPQPTAKRSAAAAEALTPSTSSSPKEKR--KAKEPAELSPEKQ 430

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +            +            E + +  + +   KK +  K+R+
Sbjct: 431 KEKDEKEAAKAERLKAKEAKRLEREAKELEKQKAKEAKEAEQKKAQEQKKRQ 482


>gi|317151598|ref|XP_001824770.2| transcriptional regulator (Cti6) [Aspergillus oryzae RIB40]
          Length = 603

 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 4/161 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624
           E+  P    +       S S + ++ +  +             ++    +      +E  
Sbjct: 270 EETKPASEEIAARRGKRSRSDSEAHKQAAKRQRTSSPSPGATSNKQSNPVSQPASEDEKA 329

Query: 625 ---TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              T   R++R   R +            ++     N      D        ++H  +  
Sbjct: 330 KAATNGTRRQRAASRSQHNKETKDVEEPEAEQPDATNRRKGRSDRRKGDGTDSDHEAVSP 389

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                T        P +T        S     K  R   RR
Sbjct: 390 TKTVATNLEPPQPSPDTTAPAPEPAPSRPSTRKSGRPPARR 430


>gi|296420719|ref|XP_002839916.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636123|emb|CAZ84107.1| unnamed protein product [Tuber melanosporum]
          Length = 807

 Score = 41.1 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/114 (9%), Positives = 33/114 (28%), Gaps = 3/114 (2%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           QA+        S+ +  S +   E    DE     P ++  + ++    +       +++
Sbjct: 389 QAVTPQPENPDSEKRPASPEAGSES---DEPPKEPPLNKEKKPVRAIKEAPPRPESSKRK 445

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
            +R   +   ++   A         +  + +  +      D     +       
Sbjct: 446 PKRTHSKTETSEERAATREKRAEKRRKRLAEKDEEPEIKLDTNTEEINTGAVEK 499


>gi|332071271|gb|EGI81766.1| choline binding protein A [Streptococcus pneumoniae GA17545]
          Length = 529

 Score = 41.1 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           ++      +           +       V +       L N K     + E         
Sbjct: 3   VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 61

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
            +   +   +   E+  P            +       D         E  LP P  +  
Sbjct: 62  KLKEAVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 121

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           + + +            K ++   RR   T+ +    +    S   V +   ++  E + 
Sbjct: 122 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 181

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + +    N A    E+       +   + +          KK     +RK
Sbjct: 182 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 223


>gi|302500916|ref|XP_003012451.1| origin recognition complex subunit  Orc4, putative [Arthroderma
           benhamiae CBS 112371]
 gi|291176009|gb|EFE31811.1| origin recognition complex subunit  Orc4, putative [Arthroderma
           benhamiae CBS 112371]
          Length = 697

 Score = 41.1 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 40/155 (25%), Gaps = 3/155 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
             P +    +   +  + +              +  +P  + ES  +     V+E+    
Sbjct: 5   SRPSKRRRVSNPDLDPEQERRESPSPTRTRKTRKNNIPATEPESTANAGTEEVAEKKDDE 64

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              +  RR  R   T +      +     + V ++                  +      
Sbjct: 65  APSQSTRRSARIKVTGNSVVSTSAGPPRPRVVEEEDTQNRKRSRKTKTSIAGSSSTKKLA 124

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                S  P +     ++ +++    KK      R
Sbjct: 125 RK---SSKPTAATTTTTTTTTTGRKNKKEDKQDER 156


>gi|154417657|ref|XP_001581848.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121916079|gb|EAY20862.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 919

 Score = 41.1 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/210 (5%), Positives = 50/210 (23%)

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
            +  E   ++                  + +K+      E +   +  V    +      
Sbjct: 493 EKKEETQAVEEKKEETPAVEEKKEETPAVEEKKEETPAVEEKKEETPAVEEKKKEETPAV 552

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             +K     A+     +  +  +        E   ++   +   K E    +++      
Sbjct: 553 EEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETP 612

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +    ++      ++   T   +     +  +++   +++  +  +  +       E   
Sbjct: 613 AVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEET 672

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
               +  +         E            
Sbjct: 673 PAQEKKEETPATEEKKEEESPVAEEKKEEE 702



 Score = 37.6 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/188 (6%), Positives = 42/188 (22%), Gaps = 4/188 (2%)

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
            +K+      E +   +  V    +        +K                + +      
Sbjct: 574 EEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPA 633

Query: 593 NIECVWQDEALLPIPKSESL----EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
             E   ++   +   K E+     +  +  +  ++      + ++            ++ 
Sbjct: 634 VEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAQEKKEETPATEEKKEEESP 693

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
           V  +    +  + +       P+                E             +E     
Sbjct: 694 VAEEKKEEETPVAEEKKEEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEE 753

Query: 709 SDPIVKKT 716
             P  +K 
Sbjct: 754 ETPAEEKK 761


>gi|170585502|ref|XP_001897522.1| Zinc knuckle family protein [Brugia malayi]
 gi|158595069|gb|EDP33644.1| Zinc knuckle family protein [Brugia malayi]
          Length = 1366

 Score = 41.1 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 36/159 (22%), Gaps = 8/159 (5%)

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
               +    +         +        DE       S SL    D     E     + RR
Sbjct: 1029 EQKSEEKAIVESKPRDDQEGCGSGKKADEKEGRSGDSSSLPKGNDKKNVREHLKHEKDRR 1088

Query: 633  RR--RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF---- 686
            R+    R+R  +              +    +  D   +      ++  +          
Sbjct: 1089 RKHDLSRKREESKDDSRITRKRNDERETKRSEEKDSRKQGDKFRKNDRKDEKLENKRWDN 1148

Query: 687  --TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +       P  +   E   S      +     ++RK
Sbjct: 1149 REGKTKGGEREPKRSGNAEKPESEMKKESRHKEHGEKRK 1187


>gi|195021736|ref|XP_001985452.1| GH17069 [Drosophila grimshawi]
 gi|193898934|gb|EDV97800.1| GH17069 [Drosophila grimshawi]
          Length = 1421

 Score = 41.1 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 53/200 (26%), Gaps = 23/200 (11%)

Query: 540  VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
             + E    V+  +   +    +   I      +A         S+ Q          V  
Sbjct: 1035 EKLENEQQVNTKISAEMPEQPEDIVITNVPKKRAPRKATQMQESELQNKRKRSRHSTVKA 1094

Query: 600  DEALLPIPKSESLEDIQDNIVSEESTGVIRK--------------RRRRRR----RRRPA 641
             E       S +    Q      E      +              +R+R R    + +  
Sbjct: 1095 KEEDNESESSITANPAQTESAETEKESTAIRADNVETKDAPGSHNKRKRPRHSDVKEKDG 1154

Query: 642  TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            T   ++       +  N  +++  + ME + +   N  +          D         +
Sbjct: 1155 TTESESTETLKGETPANGKNETESLIMENTSLPTENTKKEEVVSTAVELD-----NIEMK 1209

Query: 702  MESSNSSSDPIVKKTRWWKR 721
             ES + +     + ++  ++
Sbjct: 1210 DESESQNKRKRPRHSKVQEK 1229


>gi|326470974|gb|EGD94983.1| hypothetical protein TESG_02478 [Trichophyton tonsurans CBS 112818]
          Length = 903

 Score = 41.1 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/179 (8%), Positives = 38/179 (21%), Gaps = 9/179 (5%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603
                        E+      ++             +   + Q        + VW++   
Sbjct: 449 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEEPQPEEQNSKQRFPSKDVWEEPPQ 508

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                +            +              R     D        D+S ++      
Sbjct: 509 SQQLTTAVEAPADSEKSEKPEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPMKTQATSP 568

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            ++   PS                +  +   P   T   E+++ ++ P  K       R
Sbjct: 569 TELKKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDANPPAPKSKPALPPR 627


>gi|321457979|gb|EFX69055.1| hypothetical protein DAPPUDRAFT_114043 [Daphnia pulex]
          Length = 726

 Score = 41.1 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 1/156 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + S      + G    S     S  +      +      +    S E  + +  S   T 
Sbjct: 367 RSSDRDKPKDRGTSKTSSGSDRSGPEENRRADKKRVNTSVDSVRSSEQRRTSDKSRSPTC 426

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             +   +R   R  + D     +V+   +  +    +S     E +   + ++ ++G   
Sbjct: 427 ERKPLLKRSPPRSVSNDRDSRKLVTPSLTETERDRLESRKRKFETAPDQDSSVKKDGKIR 486

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                +   PPV     E   +     V +    +R
Sbjct: 487 LRTEINRKTPPVQLKRREEKLTKKPEAVVEQIQVRR 522


>gi|298710353|emb|CBJ31971.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1080

 Score = 41.1 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 38/160 (23%), Gaps = 1/160 (0%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +E   P +A      +     +    +           L           ++     E +
Sbjct: 211 LEPAVPDEATTPDLPRKRGRPRKTPLEPAAPDEATTLDLPRKRGRPRKAPLEPAAPDEAT 270

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           T  + ++R R R+        D     D             +        T     + G 
Sbjct: 271 TPDLPRKRGRPRKTPLEPAAPDEATTPDLPRKRGRPRKTPLEPAAPDKATTPDLPCKRGR 330

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              T          +TP+ + +  S+            R+
Sbjct: 331 PRKTPLEPAVADEATTPDQQRATPSNSAPPSPVGTPTPRQ 370



 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 5/149 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +      N   +     +    +           L           ++  +  E +T  +
Sbjct: 165 AAADQAANPDLRKRGRPKKTQLEPAASDESTTPDLPRKRGRPRKTPLEPAVPDEATTPDL 224

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            ++R R R+        D     D+   +     +      P + T  +L          
Sbjct: 225 PRKRGRPRKTPLEPAAPDEATTLDLPRKRGRPRKAPLEPAAPDEATTPDL----PRKRGR 280

Query: 689 NYDVSIPPVSTPEMESSN-SSSDPIVKKT 716
                + P +  E  + +        +KT
Sbjct: 281 PRKTPLEPAAPDEATTPDLPRKRGRPRKT 309



 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 36/168 (21%), Gaps = 8/168 (4%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                       +E    +            D         +     D+A  P  +    
Sbjct: 121 RPKPAPQPSSAELEAPPEINTPATPERVPPPDKTGRPRKTPLPPAAADQAANPDLRKRGR 180

Query: 613 EDIQDNIVSEESTGVIR---KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                   +           ++R R R+        D     D+   +     +      
Sbjct: 181 PKKTQLEPAASDESTTPDLPRKRGRPRKTPLEPAVPDEATTPDLPRKRGRPRKTPLEPAA 240

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-SSSDPIVKKT 716
           P + T  +L               + P +  E  + +        +KT
Sbjct: 241 PDEATTLDL----PRKRGRPRKAPLEPAAPDEATTPDLPRKRGRPRKT 284



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 41/154 (26%), Gaps = 5/154 (3%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E  +  ++      +     +    +  +        L           ++     E 
Sbjct: 185 QLEPAASDESTTPDLPRKRGRPRKTPLEPAVPDEATTPDLPRKRGRPRKTPLEPAAPDEA 244

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +T  + ++R R R+        D     D+   +     +      P + T  +L     
Sbjct: 245 TTLDLPRKRGRPRKAPLEPAAPDEATTPDLPRKRGRPRKTPLEPAAPDEATTPDL----P 300

Query: 684 HGFTENYDVSIPPVSTPEMESSN-SSSDPIVKKT 716
                     + P +  +  + +        +KT
Sbjct: 301 RKRGRPRKTPLEPAAPDKATTPDLPCKRGRPRKT 334


>gi|295100575|emb|CBK98120.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii
           L2-6]
          Length = 482

 Score = 41.1 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 49/196 (25%), Gaps = 12/196 (6%)

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            G   + S  A   + + E+                +    +++  +   +  E R    
Sbjct: 8   TGPAENISPEAAEPITTPEQAAASEPQQEQTGPAIPESGDVVVSFDKINELMAEKRQNAR 67

Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
             V             E     +A         ++++     +       ++A     K 
Sbjct: 68  AEVE----------KAETPETPEAAAFGETPQPANTEEAKKPRRGRPPKAEKAATENQKV 117

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV--IDDSFDMY 667
           E     +     +       K +  +R +   +D         +   Q+    + +    
Sbjct: 118 EKSAGARKGRPPKADKAAPDKPKPSKRDKVSRSDGKAPDAKEPIKPAQDTAPKETATAEQ 177

Query: 668 MEPSDITNHNLLENGA 683
             P   T    +E G 
Sbjct: 178 TAPEPTTPPRPVEEGK 193


>gi|291409855|ref|XP_002721207.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like
           [Oryctolagus cuniculus]
          Length = 967

 Score = 41.1 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 39/147 (26%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P +A      +  S  +A S  K      +        +++S E  +    ++       
Sbjct: 668 PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEA 727

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           K   + +    A         S   +   V +++       S +              E 
Sbjct: 728 KSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKETPKKEE 787

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
             V  PP    E   +    +   KK 
Sbjct: 788 VKVKEPPKKVEETAPAPPKVEKDSKKD 814


>gi|194385344|dbj|BAG65049.1| unnamed protein product [Homo sapiens]
          Length = 1062

 Score = 41.1 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 4/138 (2%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                   +          AP    +      +    P+P S         + ++E+    
Sbjct: 921  DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 980

Query: 629  RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
             ++ +R+R       P       G V      +       +             +E    
Sbjct: 981  PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 1040

Query: 685  GFTENYDVSIPPVSTPEM 702
                      P +  P+ 
Sbjct: 1041 PKRRRAADVEPSLPEPKR 1058


>gi|195438675|ref|XP_002067258.1| GK16278 [Drosophila willistoni]
 gi|194163343|gb|EDW78244.1| GK16278 [Drosophila willistoni]
          Length = 5640

 Score = 41.1 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 2/147 (1%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              +  +          +    +   E V  +         ES E  +     E  T   +
Sbjct: 4087 KDETEIPKTTPAEKSKEPSRPESVAESVKSENVKEEECPLESKEISRSGSAVESITVGSK 4146

Query: 630  KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
            ++ RR                 +VS  ++V++   D   +P  I +    E      T +
Sbjct: 4147 EQSRRESINEACKQEDAKDAPMEVSRPESVLESIKDKSEKPESIRDEKSQETSRRESTSD 4206

Query: 690  YDVSIPPVSTPEMESSNSSSDPIVKKT 716
                 PP+ +P++  + S++D   K++
Sbjct: 4207 IIH--PPILSPQLSVAASATDKQSKES 4231


>gi|117676384|ref|NP_004710.2| protein SCAF11 [Homo sapiens]
 gi|251757337|sp|Q99590|SCAFB_HUMAN RecName: Full=Protein SCAF11; AltName: Full=CTD-associated SR
           protein 11; AltName: Full=Renal carcinoma antigen
           NY-REN-40; AltName: Full=SC35-interacting protein 1;
           AltName: Full=SR-related and CTD-associated factor 11;
           AltName: Full=SRSF2-interacting protein; AltName:
           Full=Serine/arginine-rich splicing factor 2-interacting
           protein; AltName: Full=Splicing factor,
           arginine/serine-rich 2-interacting protein; AltName:
           Full=Splicing regulatory protein 129; Short=SRrp129
 gi|119578298|gb|EAW57894.1| splicing factor, arginine/serine-rich 2, interacting protein,
           isoform CRA_c [Homo sapiens]
 gi|146327184|gb|AAI41553.1| Splicing factor, arginine/serine-rich 2, interacting protein
           [synthetic construct]
          Length = 1463

 Score = 41.1 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910

Query: 720 KRRK 723
            R +
Sbjct: 911 SRER 914


>gi|297733637|emb|CBI14884.3| unnamed protein product [Vitis vinifera]
          Length = 949

 Score = 41.1 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 1/109 (0%)

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE-STGVIRKRRRRRRRRRPATDHHDAG 648
             K+ E   +D       K    +  + +  S +  T    ++  R+R+           
Sbjct: 685 AQKDPEEQEEDRNFHVWVKKPDEKPERKSESSRKAETSSAPRKSGRKRKMMVENGSTKKA 744

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
              +         +S +      D    + LE G        +   P  
Sbjct: 745 NRPEREDPTPRRRNSCEQSAREFDSYVEDELEGGPSTRLRRRNPKPPKE 793


>gi|302406130|ref|XP_003000901.1| DNA ligase [Verticillium albo-atrum VaMs.102]
 gi|261360159|gb|EEY22587.1| DNA ligase [Verticillium albo-atrum VaMs.102]
          Length = 893

 Score = 41.1 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 37/153 (24%), Gaps = 12/153 (7%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             E+                    P  D        ++         S + ++   VS +
Sbjct: 40  KAEEDEVANKENGAASAGVKGEDGPKKDSKKRAHADED----QDGKSSNKTVKTEEVSAD 95

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                  +R RR R R   D  +                       P      +   + +
Sbjct: 96  EDDAPVVKRARRNRNRIEDDEDEGMEEVPAPKP--------SPKTSPKKSKRASKSRSPS 147

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +     +      E+ES  S+ D +  ++
Sbjct: 148 PKRAKASPTPVQASEDSEVESVGSAEDDLDGES 180


>gi|87299628|ref|NP_683692.2| biorientation of chromosomes in cell division protein 1-like [Homo
            sapiens]
 gi|158931124|sp|Q8NFC6|BOD1L_HUMAN RecName: Full=Biorientation of chromosomes in cell division protein
            1-like; AltName: Full=Protein FAM44A
 gi|119613122|gb|EAW92716.1| family with sequence similarity 44, member A [Homo sapiens]
 gi|225000196|gb|AAI72451.1| Biorientation of chromosomes in cell division 1-like [synthetic
            construct]
          Length = 3051

 Score = 41.1 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 69/252 (27%), Gaps = 23/252 (9%)

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            +G+  ++   + S  +       +  A  I  H+       +  ++R        +  +S
Sbjct: 2720 SGFRTNEEIHSESYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMPKRKRKQHYLS 2779

Query: 550  INVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIEC 596
                           IE                     +    K  S++ + +     E 
Sbjct: 2780 SEDEPDDNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPKTSSETNSTTSRVMEEK 2839

Query: 597  VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHD 646
                 +     K E  +D       E+   +I+++R R R          +    TD   
Sbjct: 2840 DEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKMKDDSKTDTGI 2899

Query: 647  AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
              V    SS +  +  + +   E +++   ++  +                    +  S+
Sbjct: 2900 VTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVTSVRRRGRKPKRSLTVSD 2959

Query: 707  SSSDPIVKKTRW 718
             +     ++ R 
Sbjct: 2960 DAESSEPERKRQ 2971


>gi|157866569|ref|XP_001687676.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125290|emb|CAJ03038.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1957

 Score = 41.1 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 2/125 (1%)

Query: 586  QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR--RPATD 643
             +   +   +   +D            E+  +   +EE      K+  RRRRR  +    
Sbjct: 1793 PSSDREDGDKDADEDHPRRRTESRNGDENTDEASRAEEQHRRKAKKTGRRRRRQEQTLQQ 1852

Query: 644  HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
            H     VS  S + +           P          +     +      +PP  +    
Sbjct: 1853 HQQRKQVSSRSPLHSHEPSKDGASCSPEVRAGRGRPGSVDSVSSRIGSPGLPPRPSRAEM 1912

Query: 704  SSNSS 708
                S
Sbjct: 1913 EVKGS 1917


>gi|74190142|dbj|BAE37196.1| unnamed protein product [Mus musculus]
          Length = 493

 Score = 41.1 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 32/158 (20%), Gaps = 1/158 (0%)

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
           L      I + +      +  H     +             +         S S      
Sbjct: 146 LLHPHLRIARMAEQSGDKSHSHTPSHRAGRSRSPATKRGQSRSRTPTKRGHSRSPSPQWR 205

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
              S +  G  R  +RR R R P          +                  P+      
Sbjct: 206 RSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSR 265

Query: 678 LLENGAHGFTENYDVSIPPV-STPEMESSNSSSDPIVK 714
                  G + +   +     S       + S  P  +
Sbjct: 266 SRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARR 303


>gi|195107937|ref|XP_001998550.1| GI23574 [Drosophila mojavensis]
 gi|193915144|gb|EDW14011.1| GI23574 [Drosophila mojavensis]
          Length = 3017

 Score = 41.1 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 50/229 (21%), Gaps = 7/229 (3%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
               +         +    + +       T     L    +        E R  V      
Sbjct: 1039 DSQTDTAKPANECDATDKKESESKQKTETPRLKKLPSTAELEDRFNALERRISVQKASPT 1098

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              +         +G   +                  +         +       +E  + 
Sbjct: 1099 KAKKEPPD----EGRESKKTSPKKVAEAPAKAESKPESKEVAEEVKQTKKETSDAEIRKH 1154

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
             +              +    +  +  ++  +     +  +  +   +       PS   
Sbjct: 1155 AEGTKPEASDKKDEPAKASPSKNEKIQSEKKEPVKSKESLNEDDKKVEVLKRKSPPSTEE 1214

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                        + +   +   V     E S++ ++P+ ++ +  K+ +
Sbjct: 1215 LEKRFNALEKQLSTSKGDTNGEVDN---EKSSNKAEPVPQEEKQTKQSE 1260


>gi|189069437|dbj|BAG37103.1| unnamed protein product [Homo sapiens]
          Length = 1012

 Score = 41.1 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|223648228|gb|ACN10872.1| GTPase IMAP family member 7 [Salmo salar]
          Length = 686

 Score = 41.1 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 77/248 (31%), Gaps = 12/248 (4%)

Query: 402 TNLEAAEEIAR---QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458
           T  E  EEI R   +      A LIV+   D   ++  +++E  L+       A+  +  
Sbjct: 390 TAEELTEEICRSIYESSPGPHAFLIVLRVNDRFTEQEKKAIE-ILESVFGSGLAKHAIIL 448

Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518
            ++  LLE +            +++   C G  ++ +  +       +     +      
Sbjct: 449 FTHGDLLEGNSLEKLIGGNRDLSRLVEQCGGRYHVLNNRARGNRDQVTELMEKIDRMVEK 508

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
                ++       N+        +      I       +  +  +++K    +      
Sbjct: 509 NGGTCYT-------NEMFEDAARAKKEEEEKIQREEDERIQREKEWLQKEEEERIQREKE 561

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                  +  + ++      +++  +   + + +E  +      E   V R+R  + R +
Sbjct: 562 WMERERIKKETRERVNMERIEEDR-MERMEKDRMERERMEKERIEKDRVERERVEKERIK 620

Query: 639 RPATDHHD 646
           +   +   
Sbjct: 621 KEKVEREK 628


>gi|224091102|ref|XP_002309179.1| predicted protein [Populus trichocarpa]
 gi|222855155|gb|EEE92702.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 41.1 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 10/144 (6%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN------IECVWQDEALLPIPKSESLED 614
           + F+  +G   +       +   + +    ++          V +   L         + 
Sbjct: 265 ENFHESRGEKARRKAEEKRQARLEKELLEEEEKKQREEVARLVEERRKLRDEIMEAERDR 324

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            + + ++ E        ++R+ RR+      D G     S  +++         +  D+ 
Sbjct: 325 SRSSPLTREKNSRKEAEKKRQERRKEK----DKGSSKSNSDAEDLEKKVGKESDQKRDVE 380

Query: 675 NHNLLENGAHGFTENYDVSIPPVS 698
             + +E   H  T    V    + 
Sbjct: 381 KKSEIERRQHQKTGTESVKGQNIE 404


>gi|39973571|ref|XP_368176.1| hypothetical protein MGG_01068 [Magnaporthe oryzae 70-15]
 gi|145017975|gb|EDK02254.1| hypothetical protein MGG_01068 [Magnaporthe oryzae 70-15]
          Length = 1345

 Score = 41.1 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 43/156 (27%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            + S    L +   +  +     S    +     D A        + +    +I    + G
Sbjct: 1026 RQSERLRLADAVPEPTAPKPRKSRTSTLASQGLDRAADDDDAQPAEQPDAGDIQQRPAPG 1085

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              ++ R R+ R             +                ++ +         +     
Sbjct: 1086 PRKRGRPRKIRPIEDAASRSPSPDTPKYMSMAERMALRGKKLKVAKSRQAINRPSTKPSQ 1145

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            +E    S    +TP      S++ P+ + +  W +R
Sbjct: 1146 SEASTPSTQHANTPTPVEFESAARPVTRGSVGWPKR 1181


>gi|332847785|ref|XP_003315524.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pan
            troglodytes]
          Length = 1500

 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             F +           T  K   D  +     + +    DE  +P   S           S
Sbjct: 1276 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1330

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             + +    K ++       A D  D   V   SS              P    N  + + 
Sbjct: 1331 PKLSNKELKPQKSVVSDLEANDAKD--SVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1388

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723
             A   +          + P+    +       S  P   KT+  ++RK
Sbjct: 1389 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1436


>gi|326924458|ref|XP_003208444.1| PREDICTED: e3 ubiquitin-protein ligase RLIM-like [Meleagris
           gallopavo]
          Length = 593

 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 39/143 (27%), Gaps = 1/143 (0%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                  D  F +E                  S  PS  +++E    D  +         
Sbjct: 127 RTNPNSGDFRFSLEINVNRNNGNTNPETENEPSVEPSSGEDLENSQSDSEIPRSESPSVR 186

Query: 613 EDIQDNIVSEE-STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
           +   +   SEE +     + +RR R R P      A      S I  V +     +   S
Sbjct: 187 QPGSERSTSEELTEEASPRGQRRARSRSPEQRRTRARTDRSRSPINPVSEAPRRSHHNTS 246

Query: 672 DITNHNLLENGAHGFTENYDVSI 694
             T  +   N A G +       
Sbjct: 247 SQTFDHSAVNEAEGSSRTRQHVT 269


>gi|295103621|emb|CBL01165.1| Site-specific recombinases, DNA invertase Pin homologs
           [Faecalibacterium prausnitzii SL3/3]
          Length = 849

 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 34/152 (22%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P + +         D QA +                  + ++     D     +      
Sbjct: 555 PAEEISEEERVRKIDEQAEAKKNEKRQKSVQRYRERQNELKAAAQAGDPEAIAKLESERE 614

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           ++R +  +RR             + +++       +   E                  E 
Sbjct: 615 RKRLQGAKRRAELKAIREADPEYLRTMEEKERIRLEKMQEAERRKAEKQKNKAKRTRKEL 674

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
             ++         E     +     + R  KR
Sbjct: 675 KALAEAGDPEAIAERDAMLAKDAEARKRKKKR 706



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 59/231 (25%), Gaps = 11/231 (4%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           +       S+ R  E       A          +      ++R  +   + R  +     
Sbjct: 575 KKNEKRQKSVQRYRERQNELKAAAQ--AGDPEAIAKLESERERKRLQGAKRRAELKAIRE 632

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              E    +   E+    +             +  +  +  +     + L  + ++   E
Sbjct: 633 ADPEYLRTMEEKERIRLEKMQEAE--------RRKAEKQKNKAKRTRKELKALAEAGDPE 684

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
            I +           RKR+++R   R A D   A  +       N              I
Sbjct: 685 AIAERDAMLAKDAEARKRKKKRYAERMANDPEYAEKIRQRQRAYNKAHADKRKADYADLI 744

Query: 674 TNHNLLENGAHGFTE-NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                    A    E     S   V   +     + +DP   +    KR+K
Sbjct: 745 KRAETDPEAARKLAEIRAYQSRKTVECYQNLVERAKTDPAAAEKLAQKRQK 795


>gi|15220892|ref|NP_178208.1| MIF4G domain-containing protein / MA3 domain-containing protein
           [Arabidopsis thaliana]
 gi|6503305|gb|AAF14681.1|AC011713_29 Contains similarity to gb|U19615 LET 858 gene from Caenorhabditis
           elegans. ESTs gb|AI995150, gb|H76674 and gb|R84035 come
           from this gene [Arabidopsis thaliana]
 gi|22654971|gb|AAM98078.1| At1g80930/F23A5_23 [Arabidopsis thaliana]
 gi|28416525|gb|AAO42793.1| At1g80930/F23A5_23 [Arabidopsis thaliana]
 gi|332198347|gb|AEE36468.1| pre-mRNA-splicing factor CWC22 [Arabidopsis thaliana]
          Length = 900

 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 43/217 (19%), Gaps = 13/217 (5%)

Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568
           E                ++       ++      E   G  I V       D    + KG
Sbjct: 67  EGRRGDKVRRKETSDDEELARRSRKDRKEANSGSEDDRGKRIEVDSD---GDGERRVNKG 123

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES---- 624
                +         D    +  + +E              + +E          S    
Sbjct: 124 RNTDRVRADTSSDEEDDLKGNKKEPMEVDDDYGRRGRRRSPKVMEKQGRERSHRGSRVIA 183

Query: 625 ----TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP--SDITNHNL 678
                    ++R R  RR       D     D    +   +       +     +   + 
Sbjct: 184 DKPSDEEDDRQRSRGGRRESQRKRRDHRASDDDEEGEIRSERRGKEKNDRGSEGLLKRDR 243

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            E       EN                +   D   ++
Sbjct: 244 RERDLTDGHENGSRRRESERKDRSRRDDGVRDEKERR 280


>gi|15895607|ref|NP_348956.1| recombination and DNA strand exchange inhibitor protein
           [Clostridium acetobutylicum ATCC 824]
 gi|38604976|sp|Q97GM6|MUTS2_CLOAB RecName: Full=MutS2 protein
 gi|15025349|gb|AAK80296.1|AE007734_10 DNA mismatch repair protein mutS, YSHD B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
          Length = 788

 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 71/218 (32%), Gaps = 8/218 (3%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIV----EYEARFGV--SINVVIGIELADKLFYIEK 567
             ++   +     +  Y++ + R  I     E+E       + +V     L    F  E+
Sbjct: 484 GKSNAFEISKRLGLSDYIIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKAEFLKEQ 543

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +          ++++  +  +      +          + L+D+++      S+  
Sbjct: 544 AEKFKEKYEEKVSSITETREKALHEGRREAKKIIEEAKSEADKILKDMREMERLGYSSEA 603

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID--DSFDMYMEPSDITNHNLLENGAHG 685
            ++ +  R++ +   ++ +  +          +      +    PS      ++      
Sbjct: 604 RQRLQESRQKLKEKLNNAEESLNISERDQGEALKSVKEGEEVFIPSLNMKGIVISTQDSK 663

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   I  ++    +   ++++PI KK +  K+R+
Sbjct: 664 GEVGIQAGIMKINVKLKDLRKTNNNPISKKEKAVKKRE 701


>gi|332819231|ref|XP_003310320.1| PREDICTED: LOW QUALITY PROTEIN: biorientation of chromosomes in cell
            division protein 1-like [Pan troglodytes]
          Length = 2926

 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 70/262 (26%), Gaps = 23/262 (8%)

Query: 480  TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
                    + +G+  ++   + S  +       +  A  I  H+       +  ++R   
Sbjct: 2585 LMNESLNVENSGFRTNEEIHSESYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMP 2644

Query: 540  VEYEARFGVSINVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQ 586
                 +  +S               IE                     +    K  S++ 
Sbjct: 2645 KRKRKQHYLSSEDEPDDNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPKTSSETN 2704

Query: 587  APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---------- 636
            + +     E      +     K E  +D       E+   +I+++R R R          
Sbjct: 2705 STTSRVMEEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKM 2764

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            +    TD     V    SS +  +  + +   E +++   ++  +               
Sbjct: 2765 KDDSKTDTGIVTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVTSVRRRGR 2824

Query: 697  VSTPEMESSNSSSDPIVKKTRW 718
                 +  S+ +     ++ R 
Sbjct: 2825 KPKRSLTVSDDAESSEPERKRQ 2846


>gi|195154857|ref|XP_002018329.1| GL17653 [Drosophila persimilis]
 gi|194114125|gb|EDW36168.1| GL17653 [Drosophila persimilis]
          Length = 638

 Score = 41.1 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 53/220 (24%), Gaps = 10/220 (4%)

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
                  +    A  +        V+ ++      I+    +      +   + L     
Sbjct: 408 QHLKTRNVQAQRAKVLRETRLIPKVIMVIEDFNKHIILLSKKTKTFNRLTDYLHLGT--- 464

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
                                S   +++   +    ++       ++   D ++   +E 
Sbjct: 465 ----MRDFDIKSTDLKAAIERSLTDTHEVAEDDCTTEDMEDIDHSNDPSNDEEEEAETEI 520

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                +++R+RR       +          + I        D   E ++     +     
Sbjct: 521 IQAPNKRQRQRRAPISDTEESQPKRRRGQKAKIVQSAKPQSDDEQESNEEQLETIQTTKL 580

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              T+         ST       S+ +    + R    RK
Sbjct: 581 RNRTKKRQT---KKSTRLSNEEESAEERGPTEQRTKDMRK 617


>gi|326679400|ref|XP_002665873.2| PREDICTED: hypothetical protein LOC402866 [Danio rerio]
          Length = 1455

 Score = 41.1 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/221 (6%), Positives = 41/221 (18%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             +        +                 +          +K+        +  V  +   
Sbjct: 942  KREPRWRESEKKEARRTESEKKEARRSESEKKEARMSEIEKKEARRSESEKKEVRRSESE 1001

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              E     F  ++    ++            +A   +   +   + E+     +    E 
Sbjct: 1002 KKEARRSEFEKKEARRSESEKKEARSESEKKEARRSESEKKEGRRSESEKKEARRSESEK 1061

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
             + N   ++        ++  R      +          +                    
Sbjct: 1062 ARRNESEKKEARRNESEKKEARSESEKKEARRKESEKKEARRNESEKKGGRRNESEKKEG 1121

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              N  E          +         E   + S      +K
Sbjct: 1122 RRNESEKKDARNKSEKEARRSDSELKEASRTESELKEARRK 1162



 Score = 40.7 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 1/179 (0%)

Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596
           + I E E R    I   +     ++    E                  +++   +     
Sbjct: 756 SEIKESEKREAKKIESEMKQARKNESEKKETRKSEPEKKEAERVETRKTESEKKEVRKSE 815

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
             + EA   + +    E  +      E+         ++  RR  ++  +A   S+    
Sbjct: 816 SEKKEAERKLERKSESERKEAKKSESENKEARGNESEKKGARRSESEKKEAR-RSESEKR 874

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           +N   +S       ++              T   +         E E   +      KK
Sbjct: 875 ENRRSESEKKEARRNESEKRETRSESEKRETRRSESEKREPRWRESEKKEARRTESEKK 933


>gi|313664939|ref|YP_004046810.1| hypothetical protein MSB_A0051 [Mycoplasma leachii PG50]
 gi|312949781|gb|ADR24377.1| conserved hypothetical protein [Mycoplasma leachii PG50]
          Length = 1663

 Score = 41.1 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 55/602 (9%), Positives = 159/602 (26%), Gaps = 50/602 (8%)

Query: 131  QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190
             +   + + S       N  ++             ++  IQ    +   +L      +R 
Sbjct: 1051 DDLNIQIVNSFGQVKELNENNISDDFINFDKSNKNKKMSIQVSASDFSTIL------KRN 1104

Query: 191  NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250
                   T                      +     + +     ++  +       +I  
Sbjct: 1105 QFKVFTVTNSLYHLTSLNDFSFYDINTNFDKLNEQDIRKFITNTVSSQINSKYNKSIIKN 1164

Query: 251  TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310
                    + + +D+++ +   +   +    S+  +  +    +             ++ 
Sbjct: 1165 KKQDEDITLTLGKDYQFFLAKKEETDQQLEESIKRNQTFASQEI---------NDFFTKG 1215

Query: 311  IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
              S  +    A +  + +  S  +     +           ++ +  L +    +   G+
Sbjct: 1216 KSSNYRIVIYALENSQYISSSNKKWFINDDKKFNAPSTIFEQLDVKELFK----ITDLGW 1271

Query: 371  VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL------RDLAGLIV 424
            +   Q E + S+D+ +                +  +++E   +L L      R      +
Sbjct: 1272 INKKQYEKITSLDLMNKLIELNKNNIKKLGY-DSLSSKEFLNELNLVKNKEERAGPNRFI 1330

Query: 425  VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484
             ++      KNN  + K       +      +   +    +        ++++       
Sbjct: 1331 RNYTFDIISKNNSKIFKGTLTGKFQSPNNTNIVEKARIDNI-----FKHNTIIRVKKIEQ 1385

Query: 485  TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS--DVVLYLLNQKRATIVEY 542
               K   + +       +I R   +         I   ++S  ++++   N+ +      
Sbjct: 1386 PESKEYFWNKIIEHFNDTISRLTFKPEKDEFEIEIQKKSNSYYEIIITAKNENKHF---- 1441

Query: 543  EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
                  +I  +    + +    I+   P +                   ++ +   + + 
Sbjct: 1442 --TGSTNIFFIEDSTIDE---IIKPELPDEDKSPEPGYNEFSPDDSDSSRDDDSTNRRDE 1496

Query: 603  LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             +P   S    D +    +    G    R       R   ++   G  S+ ++  N    
Sbjct: 1497 NIPGDNSSRNPDSRTPGSNSNRDGSSSNRSGNENGSRSGNEN---GTSSNPTNPSNEEQP 1553

Query: 663  SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI-----VKKTR 717
               +        +     N    + E  D ++ P  TP+        +        KK R
Sbjct: 1554 GDYVSPHKPGNVSPESETNTNDKWWEKEDDTLEPTPTPKEPEDKIKPEEKWILGLTKKDR 1613

Query: 718  WW 719
             W
Sbjct: 1614 NW 1615


>gi|300176433|emb|CBK23744.2| unnamed protein product [Blastocystis hominis]
          Length = 498

 Score = 41.1 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 13/135 (9%)

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-----------RRRRRRRRRPAT 642
            +    +       + E  +D  D     +      +            RR+ + RRP  
Sbjct: 119 NDDSEDEAPRKKSRRVEVSDDDDDFEPRRKPKARRPQVSDDDDEDDFEPRRKPKGRRPQV 178

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
              D                S D   EP          N   G  ++++    P      
Sbjct: 179 SDDDDDFEPRRKPKGRRPQVSDDDDFEPR--RRPKARNNDVSGDEDDFEPRRKPKGRRPQ 236

Query: 703 ESSNSSSDPIVKKTR 717
            S +   D   ++  
Sbjct: 237 VSDDEDEDEAPRRKG 251



 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 41/158 (25%), Gaps = 10/158 (6%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +A      +V        ++   +   +   +      +  E  +             
Sbjct: 123 EDEAPRKKSRRVEVSDDDDDFEPRRKPKARRPQVSDDDDEDDFEPRRKPKGRRPQVSDDD 182

Query: 630 K---RRRRRRRRRPA-TDHHDAGVVSDVSSIQNVI---DDSFDMYMEPSDITNH---NLL 679
                RR+ + RRP  +D  D        +  N +   +D F+   +P         +  
Sbjct: 183 DDFEPRRKPKGRRPQVSDDDDFEPRRRPKARNNDVSGDEDDFEPRRKPKGRRPQVSDDED 242

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           E+ A           P     +  +   +  P     +
Sbjct: 243 EDEAPRRKGKAPAKSPAKGPAKSPAKAPAKSPAKGPAK 280


>gi|332858252|ref|XP_001165874.2| PREDICTED: LOW QUALITY PROTEIN: PHD finger protein 20 isoform 3
           [Pan troglodytes]
          Length = 1012

 Score = 40.7 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|195159728|ref|XP_002020730.1| GL15738 [Drosophila persimilis]
 gi|194117680|gb|EDW39723.1| GL15738 [Drosophila persimilis]
          Length = 1530

 Score = 40.7 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 7/161 (4%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
            VQ   +       + +A         + +++   P+P+S        N  S E      
Sbjct: 519 NVQEESHQSWPQLKNDEAQRNPDENSSLKEEQIPQPLPESMRRLPPTRNSASAEDKTDEL 578

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           +++R+   R+P   +    V S   +       + +      D    NL  + A    E 
Sbjct: 579 QKKRKEHHRKPQEQNQRELVFSPTRNSVPHKRVAEEDDPNKQDEDWSNLKNDEAQRNPEE 638

Query: 690 YDVSIP-------PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                        P S   +  + +S+    K     K+RK
Sbjct: 639 NSSLKEEQIPQLLPESPRRLPPTRNSASAEDKTDELQKKRK 679


>gi|325118253|emb|CBZ53804.1| hypothetical protein NCLIV_035850 [Neospora caninum Liverpool]
          Length = 3060

 Score = 40.7 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 39/181 (21%), Gaps = 13/181 (7%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                 + +    ++       V    + G        ++         A      +   +
Sbjct: 2495 ASDARSREHSEEQRRRETSEKVGQAGQGGHCEDRKDAERREREEKAARAPGDDTNARGKD 2554

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                   S   +   R+ +R+RR     ++           +       S         +
Sbjct: 2555 TPSRPSRSRSKSPGDRESKRQRRENEKESEKAPLASAEAKGNRGRSASVSGRDAETKESV 2614

Query: 674  TNHNLLENGA-----------HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +      G                +  D S  P       +    +    K+T     R
Sbjct: 2615 RSEGAKPRGTGPPATAPASAAKKCGKEADASEQPRGPKSAVAEKLEAS--EKRTGGKDER 2672

Query: 723  K 723
            +
Sbjct: 2673 Q 2673


>gi|298386287|ref|ZP_06995843.1| transcription termination factor Rho [Bacteroides sp. 1_1_14]
 gi|298260664|gb|EFI03532.1| transcription termination factor Rho [Bacteroides sp. 1_1_14]
          Length = 740

 Score = 40.7 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/151 (7%), Positives = 41/151 (27%), Gaps = 6/151 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +               + +   + +K      + +       +   ++        E   
Sbjct: 85  RSRTAAPKKEEKVAPAAKNAEVTKNKENAPAAKPQQQPKEEAANKAKEAPVAEPKAEKAA 144

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +++  R R+     +  +     +V + + ++  + +  +    +      +      
Sbjct: 145 P-KRKVGRPRK---DANIAEKAENKEVENAKPIVKPAEEKAVAEKPVVAPATEKAAPTQE 200

Query: 687 TENYDVSIPP--VSTPEMESSNSSSDPIVKK 715
           TE       P     P +      S P++ +
Sbjct: 201 TEKKVKENKPAVAEKPVIAKPQKKSAPVIDE 231


>gi|241153529|ref|XP_002407093.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215494024|gb|EEC03665.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 697

 Score = 40.7 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 12/279 (4%)

Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490
           E+ K+ R + ++L+ES  +D+       +   G  +     + ++   S   +  Y K +
Sbjct: 406 EDSKHWRRLYEQLRESRARDKTGSVWKKL--LGTAQTLYDDMETAFDASLDSLFRYVKDS 463

Query: 491 GYIRSQ-SSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
             +    +     ++  + E + +  A     +  +  D           TI   E    
Sbjct: 464 AELAGDLTPRLQELVTKMREEVAKKRAEFQEYMEQSSQDRDETHGAAVSRTIKLLEGSLK 523

Query: 548 VSINVVIGIELADKLFYIEKGSPV---QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                 +G +   K   + +       + L      +G   +  +   +      + A  
Sbjct: 524 K--VFQVGAKFMAKGKKVTEAKADKLFEKLSKVALALGRRWEKVATPGDAPSGGAETAAR 581

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P+ E L     ++V EE          RR + R R   +   A   +     QN   +
Sbjct: 582 KKPEEEGLGKRAMDLVEEEEKKEREDWFSRRAKGRERQRGEESTAETENWYLKRQNWRRE 641

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
           +     +P+           +     +  ++     T +
Sbjct: 642 AVKTTAKPTKSRADKKTRRNSSRDHRHPSLTSEEDETKK 680


>gi|13094237|dbj|BAB32786.1| Msx-2 interacting nuclear target protein [Mus musculus]
          Length = 3551

 Score = 40.7 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%)

Query: 588  PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
             S     E V Q        + E  E +              +RR          +  + 
Sbjct: 1842 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1901

Query: 648  GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706
               ++          +     +     N   +E  A    +       P S  E E+++ 
Sbjct: 1902 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1961

Query: 707  ---SSSDPIVKKTR 717
                  DP   K+ 
Sbjct: 1962 PKRDRRDPSTDKSG 1975


>gi|325283014|ref|YP_004255555.1| ribonuclease R [Deinococcus proteolyticus MRP]
 gi|324314823|gb|ADY25938.1| ribonuclease R [Deinococcus proteolyticus MRP]
          Length = 1434

 Score = 40.7 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 34/135 (25%)

Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
              +AP+ +  ++    +    P       ++  +     E+   ++ RR  RR    A 
Sbjct: 134 PIQEAPAQEPPVQPSLAEAMEEPAADQNESQEQAEPQAQAEAEAQLKPRRTGRRNAAAAE 193

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
           +   A                       S   +       A    E    + P  + P  
Sbjct: 194 EPAAAKKPKSTRRRAAAGKSDTAAQTPESAAESPGAAVATAESSEEAATSTPPKKARPRR 253

Query: 703 ESSNSSSDPIVKKTR 717
             +  +       T 
Sbjct: 254 SKAALAGAAASTDTG 268


>gi|320593091|gb|EFX05500.1| cupin domain containing protein [Grosmannia clavigera kw1407]
          Length = 684

 Score = 40.7 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 2/140 (1%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                   +            DE       S   +  ++      +    R   ++  RR
Sbjct: 222 TPDNGADDSMQMIDGPNEFADDEPEEQDEPSVHEDVAEEEEPVLPTKKRGRPPAKKTARR 281

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF--TENYDVSIPP 696
           RP    + +  V          DD  D     +          G        N  V    
Sbjct: 282 RPGRPSNASNDVPSPPPSPPPHDDEADEEQGSAKRQRKEAKPKGRPRGRPAANRPVVEEA 341

Query: 697 VSTPEMESSNSSSDPIVKKT 716
               +   ++ +   + KK 
Sbjct: 342 ADEGQSGEASQAGKRMTKKK 361


>gi|313246897|emb|CBY35750.1| unnamed protein product [Oikopleura dioica]
          Length = 1748

 Score = 40.7 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 29/150 (19%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I++    +              + +  K         A     +        D+    E 
Sbjct: 530 IKRLDNKRDDSQDSKSKEVYIPSENDRKKTLGETNPNAERKKDEQRGNSRRDDSDRRRER 589

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 RR +R  RR            + S          +   +               
Sbjct: 590 DDRGPNRREKRDNRREREPREGKHHQRERSEKNEGHSTRAERPEKGQRHREEKPESGPRE 649

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 +    P  + + E +        K
Sbjct: 650 KPKRGENSRNKPEKSAKAEVAQKEEKQEAK 679


>gi|255935861|ref|XP_002558957.1| Pc13g05230 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583577|emb|CAP91592.1| Pc13g05230 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1124

 Score = 40.7 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 38/142 (26%)

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                  PS         ++        S+  +          S G     R+R R R  
Sbjct: 99  EDQPESIPSLGPANVEADRERRTRRGRDSDKDKTSSKRDSEPRSRGEKDDSRKRDRSRDA 158

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
            +              Q+  D   D  +   ++      E+ +     +   + P  S  
Sbjct: 159 ESRDRPRTRKLRKKGSQDFEDRWGDEEILEDEMYPEEFEESPSKRTRLDDGSASPLASPA 218

Query: 701 EMESSNSSSDPIVKKTRWWKRR 722
           +    +  +   +++ R  + R
Sbjct: 219 DDIDIDPKTKQEIERQRDLRER 240


>gi|18034775|ref|NP_057520.2| PHD finger protein 20 [Homo sapiens]
 gi|32699605|sp|Q9BVI0|PHF20_HUMAN RecName: Full=PHD finger protein 20; AltName: Full=Glioma-expressed
           antigen 2; AltName: Full=Hepatocellular
           carcinoma-associated antigen 58; AltName: Full=Novel
           zinc finger protein; AltName: Full=Transcription factor
           TZP
 gi|13195151|gb|AAK13046.1| transcription factor TZP [Homo sapiens]
 gi|56204066|emb|CAI19247.1| PHD finger protein 20 [Homo sapiens]
 gi|57284133|emb|CAI43145.1| PHD finger protein 20 [Homo sapiens]
 gi|119596559|gb|EAW76153.1| PHD finger protein 20, isoform CRA_a [Homo sapiens]
 gi|119596561|gb|EAW76155.1| PHD finger protein 20, isoform CRA_a [Homo sapiens]
 gi|119596562|gb|EAW76156.1| PHD finger protein 20, isoform CRA_a [Homo sapiens]
 gi|119596563|gb|EAW76157.1| PHD finger protein 20, isoform CRA_a [Homo sapiens]
          Length = 1012

 Score = 40.7 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|152012477|gb|AAI50179.1| PHD finger protein 20 [Homo sapiens]
          Length = 1012

 Score = 40.7 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|145637296|ref|ZP_01792957.1| isopropylmalate isomerase large subunit [Haemophilus influenzae
            PittHH]
 gi|145269548|gb|EDK09490.1| isopropylmalate isomerase large subunit [Haemophilus influenzae
            PittHH]
          Length = 1763

 Score = 40.7 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 5/150 (3%)

Query: 560  DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                 +    P +   +   +  ++S   +   +     +         + + E +Q   
Sbjct: 1262 QPSATVSTEQPAKETSSNVEQPVTESTTVNTRNSAVGNPEKTTPATTQSAVNSEAVQSKT 1321

Query: 620  VSEESTGVIRKRRRRRRR----RRPATDHHDAGVVSDVS-SIQNVIDDSFDMYMEPSDIT 674
               +++     + RRRR     +  +TD       S+ S    N    S     E S   
Sbjct: 1322 TEADNSESSEPKSRRRRSISQLQETSTDETTVANNSESSNKPNNRRRRSVSQPQETSTDE 1381

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                  N       +   + P        S
Sbjct: 1382 TTATSTNETTVADNSESSNKPKSRRKRSVS 1411


>gi|114681715|ref|XP_001165798.1| PREDICTED: PHD finger protein 20 isoform 1 [Pan troglodytes]
 gi|114681717|ref|XP_001165836.1| PREDICTED: PHD finger protein 20 isoform 2 [Pan troglodytes]
          Length = 1012

 Score = 40.7 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|4432952|dbj|BAA20854.1| DNA (cytosine-5-) -methyltransferase [Rattus norvegicus]
          Length = 340

 Score = 40.7 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 34/155 (21%), Gaps = 6/155 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624
           K  P +             +     K      +  A       E  E ++       EE 
Sbjct: 157 KRKPKEDSEKGNANESVAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 216

Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 RR RR+ R    R  +           + +    DD  D           +L  
Sbjct: 217 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 276

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                         PP    E E          KK
Sbjct: 277 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 311


>gi|307203858|gb|EFN82794.1| TWiK family of potassium channels protein 18 [Harpegnathos
           saltator]
          Length = 889

 Score = 40.7 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 46/159 (28%), Gaps = 5/159 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +       V    +  S  +  +  +    V Q++ +    ++     + D  V     
Sbjct: 135 TRPVKQTVEVANKAEDDSPKRETTKPEVNPQVIQEKVVQDTSETPKETTVADEAVKPSEA 194

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             + +R +R+ + R           +D S +    + S      P          +G   
Sbjct: 195 RKVERRLKRKSKER----VERYSRSTDSSDMDEKSELSRRRTKSPEAARVRLKKTSGKSR 250

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRWWKRRK 723
            + + +           E  + S   +   + R  + +K
Sbjct: 251 SSNDSEAQKRDAEKLSREKRSPSGQKLEDTEPRTQEGKK 289


>gi|307182085|gb|EFN69463.1| DNA topoisomerase 1 [Camponotus floridanus]
          Length = 1038

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 47/221 (21%), Gaps = 6/221 (2%)

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS--INVVIGIELADKLF 563
              E                D      + K     E E R      I +    ++     
Sbjct: 251 KHRESSSSSKDKQHRHEKDKD---RHRHDKSKHRDEKEKRDKDKEEIKIKEETDMKLNHA 307

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             E+      +     +          D +                E++++      ++ 
Sbjct: 308 TNERFHYNLEVKPEIKEEPMTQLELDEDDDSGGERPLYIKEEDDDEEAVKEEASMDSTDG 367

Query: 624 STGVIRKRRRRRRRRRPATDHHDA-GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +   +        +    ++        S VS       +S +    P            
Sbjct: 368 NDTRLSDLHNTTLKTEEDSEEDKPLSSRSKVSPSVKRKIESDEEEDVPLSARKKPKRATS 427

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +    +            E+ES   S   +  K      RK
Sbjct: 428 SKTKKKKRKHDGENDDDSEVESEEKSKKKVRAKGEGASPRK 468


>gi|221503729|gb|EEE29413.1| trichohyalin, putative [Toxoplasma gondii VEG]
          Length = 2088

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 49/206 (23%), Gaps = 3/206 (1%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
              EE   +  A    V      +    N+ +    E E   G    +   +E   K   
Sbjct: 511 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEK--GKQEAIEKAVEEERKKME 568

Query: 565 IEKGS-PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            E+             K  +  +A   ++      ++E      + E  +        EE
Sbjct: 569 QEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEE 628

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
               + + R   ++ R   +      +      +    +      +          E   
Sbjct: 629 ERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREQWQKRQEEREKENEQDG 688

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSS 709
               +    +     T    ++    
Sbjct: 689 EEMKQKLQRARDENETARKRATELER 714



 Score = 38.0 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 60/227 (26%), Gaps = 8/227 (3%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
              EE   +  A    V      +    N+ +    E E     +I   +  E       
Sbjct: 379 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEKAVEEERKKMEQE 438

Query: 565 IEK----GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            E+     +  +       +     +    ++  E   +  A     K E++E   +   
Sbjct: 439 REEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEER 498

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD----SFDMYMEPSDITNH 676
            +        ++ R    +   +  +  V  +   ++   ++      +M     +    
Sbjct: 499 KKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEK 558

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + E       E  +         + +          ++ +  + R+
Sbjct: 559 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQERE 605



 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 14/233 (6%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
              EE   +  A    V      +     + +    E E     +I   +  E       
Sbjct: 445 HRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQE 504

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD----EALLPIPKSESLEDIQDNIV 620
            E+    +A    G +   +       K +E    +     A +   K E++E   +   
Sbjct: 505 REEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEKAVEEER 564

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            +        ++ R    +   +  +  V  +   ++   ++      E        + +
Sbjct: 565 KKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEK 624

Query: 681 NGAHGFTENYD---------VSIPPVSTPEMESS-NSSSDPIVKKTRWWKRRK 723
                  +                      +E +       + ++   W++R+
Sbjct: 625 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREQWQKRQ 677


>gi|195053924|ref|XP_001993876.1| GH18674 [Drosophila grimshawi]
 gi|193895746|gb|EDV94612.1| GH18674 [Drosophila grimshawi]
          Length = 630

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 5/220 (2%)

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE-YEARFGVSINVVIGIE 557
             + + +   +  L+     I+      +   LL    + + +  E +  V + +    +
Sbjct: 79  KMIDVTKLTTKLDLKVRTSKIVAGHEPKLTNELLQAMASVVDQRLEWQDAVQLVLNSDPD 138

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
            A       K  P +         G D       +      + +      ++        
Sbjct: 139 KAKSQ---SKPKPAKTTSKQISPTGKDPTPTQRKEKRISPQEQKLRKATEQTARKSPADK 195

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYMEPSDITNH 676
                           + +  +  +           S   Q V  +S    M P+     
Sbjct: 196 EKPLRRHKPSPDASEAKPKLTKQGSKQKSPSPTKPTSKLKQQVSSESEIKSMSPTPAAQV 255

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                      E    S  P S    E      +P+ + +
Sbjct: 256 KQPSPVKQPSPEPSPKSNAPKSPSPKEKPAPVVEPVKQPS 295


>gi|5916179|gb|AAD55931.1|AF156529_1 Msx2 interacting nuclear target protein [Mus musculus]
          Length = 3576

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%)

Query: 588  PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
             S     E V Q        + E  E +              +RR          +  + 
Sbjct: 1865 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1924

Query: 648  GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706
               ++          +     +     N   +E  A    +       P S  E E+++ 
Sbjct: 1925 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1984

Query: 707  ---SSSDPIVKKTR 717
                  DP   K+ 
Sbjct: 1985 PKRDRRDPSTDKSG 1998


>gi|320161941|ref|YP_004175166.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1]
 gi|319995795|dbj|BAJ64566.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 2/126 (1%)

Query: 35  KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94
           +   KG +    V R+E     AFV+ G  R G L   E+   Y + P    +   +   
Sbjct: 97  RDLKKGMVVKGTVVRLEKF--GAFVEIGAERPGLLHISEMAHGYVREPSEVVKEGDEIEV 154

Query: 95  IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154
                +             +P     EE         + E       + +        + 
Sbjct: 155 EVIDFNRKKRQIKLSRKALLPEPVKEEEPIQAFIEPPKRERPKDREKDKEKDKEKAQRRK 214

Query: 155 GSPEDV 160
            +    
Sbjct: 215 KAKAPR 220


>gi|313236695|emb|CBY11952.1| unnamed protein product [Oikopleura dioica]
          Length = 1748

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 29/150 (19%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I++    +              + +  K         A     +        D+    E 
Sbjct: 530 IKRLDNKRDDSQDSKSKEVYIPSENDRKKTLGETNPNAERKKDEQRGNSRRDDSDRRRER 589

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 RR +R  RR            + S          +   +               
Sbjct: 590 DDRGPNRREKRDNRREREPREGKHHQRERSEKNEGHSTRAERPEKGQRHREEKPESGPRE 649

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 +    P  + + E +        K
Sbjct: 650 KPKRGENSRNKPEKSAKAEVAQKEEKQEAK 679


>gi|195375174|ref|XP_002046378.1| GJ12538 [Drosophila virilis]
 gi|194153536|gb|EDW68720.1| GJ12538 [Drosophila virilis]
          Length = 1083

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 4/157 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K     A   T  +    S++P   K+ +    D +      S S      +   E  T 
Sbjct: 342 KSRAAVADNGTTPENPFRSRSPERRKDNKSRRNDSSTEKREHSASRR----HKSKERPTR 397

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +R   R+R +            +    +    +          +             
Sbjct: 398 TPPRRETERQRSKERQRSKQRAGSKERKRSKERRSERQRSKERQRSLGKERQKSKDRARS 457

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            E         S    +    S +    K R   + +
Sbjct: 458 KERQKSKERQRSKERPKERQRSKERPRSKERQRSKER 494



 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 48/182 (26%), Gaps = 2/182 (1%)

Query: 544 ARFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
            + G S   V       +  F        +   +  +   ++ +  S  +  +   +   
Sbjct: 338 KKSGKSRAAVADNGTTPENPFRSRSPERRKDNKSRRNDSSTEKREHSASRRHKSKERPTR 397

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P  ++E     +     + +    RKR + RR  R  +      +  +    ++    
Sbjct: 398 TPPRRETERQRSKERQRSKQRAGSKERKRSKERRSERQRSKERQRSLGKERQKSKDRARS 457

Query: 663 SFDMYMEPSDITNHNLLEN-GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                 +    +     E   +     + +           E   S   P  K     K 
Sbjct: 458 KERQKSKERQRSKERPKERQRSKERPRSKERQRSKERLRSKERLRSKEKPRSKDRHRSKE 517

Query: 722 RK 723
           R+
Sbjct: 518 RQ 519


>gi|156555382|ref|XP_001605299.1| PREDICTED: similar to WOC protein, putative [Nasonia vitripennis]
          Length = 1497

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 66/253 (26%), Gaps = 13/253 (5%)

Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
           +++R   S      K C           Q+   + +     + L       +       +
Sbjct: 180 TKKRTDDSAENIQEKKCDKKSSQTNSSEQNLECIDMENEGVKQLSSEKNDEVENTEFVQI 239

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
                NQ +    + E +            L  +   +E          T          
Sbjct: 240 -----NQDKDD-SQLENQPDAEDPFAAD-NLNTQNDNVEPMEVDSGKDKTSKSGSPKHDD 292

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
            + +K  +    D+    I K +  E    +   E S        ++           D 
Sbjct: 293 NTQEKEKDTQSSDKTEEVIKKPDESEKSAKSPRDEASKSSKESSDKKDGSTEVLPGQDDK 352

Query: 648 GVVSDVSSIQNV------IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
             +   S+ +N       +D+S    M+  D       +  A+   +N   S        
Sbjct: 353 LCIIPDSTKENKASDKDEVDESKSADMKKKDTEKEEATDGKANQDDKNSKESKNDKDVTG 412

Query: 702 MESSNSSSDPIVK 714
              S+ +S   +K
Sbjct: 413 SVDSSENSKENLK 425


>gi|156553024|ref|XP_001604772.1| PREDICTED: similar to ENSANGP00000011817 [Nasonia vitripennis]
          Length = 2108

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 61/257 (23%), Gaps = 15/257 (5%)

Query: 466  EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
            E +R+R R S  +S+          G     +   + I         + +          
Sbjct: 1570 ETTRRRGRPSKNQSSKSESVDDSARGVETPATEEKIEIASETPRRRGRPSKDQASKSESV 1629

Query: 526  DVVLYL-----LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
            D            +K     E   R G           +      E  +P          
Sbjct: 1630 DDSATEAETPATEEKTEGASETPRRRGRPTKDQASKSESVDDSATEAETPATEEKTESAS 1689

Query: 581  VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                 +              + L    ++  +E+        ES     +RR R  + + 
Sbjct: 1690 ETPRRRGRPTKDQASKSESVDDLATEVETPVMEE------KTESASETPRRRGRPTKDQA 1743

Query: 641  ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
            +     +  V D ++                               +E+ D     V TP
Sbjct: 1744 S----KSESVDDSATEAETPATEEKTESSSETPRRRGRPTKDQASKSESVDDLATEVETP 1799

Query: 701  EMESSNSSSDPIVKKTR 717
             ME    S+    ++  
Sbjct: 1800 VMEEKTESASETPRRRG 1816



 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 51/215 (23%), Gaps = 6/215 (2%)

Query: 505  RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
            R       Q +    +  +   V      +K     E   R G           +     
Sbjct: 1574 RRGRPSKNQSSKSESVDDSARGVETPATEEKIEIASETPRRRGRPSKDQASKSESVDDSA 1633

Query: 565  IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
             E  +P       G       +                   +  S +  +        ES
Sbjct: 1634 TEAETPATEEKTEGASETPRRRGRPTKDQASKSE------SVDDSATEAETPATEEKTES 1687

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 +RR R  + + +       + ++V +                         + + 
Sbjct: 1688 ASETPRRRGRPTKDQASKSESVDDLATEVETPVMEEKTESASETPRRRGRPTKDQASKSE 1747

Query: 685  GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
               ++   +  P +  + ESS+ +     + T+  
Sbjct: 1748 SVDDSATEAETPATEEKTESSSETPRRRGRPTKDQ 1782


>gi|70998570|ref|XP_754007.1| SNF2 family helicase/ATPase (Ino80) [Aspergillus fumigatus Af293]
 gi|74672951|sp|Q4WTV7|INO80_ASPFU RecName: Full=Putative DNA helicase ino80
 gi|66851643|gb|EAL91969.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus
           fumigatus Af293]
          Length = 1708

 Score = 40.7 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 43/182 (23%), Gaps = 11/182 (6%)

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINV-VIGIE-LADKLFYIEKGSPVQALVNTGHKVG 582
                 + N+K  T  + EA   +   +       +    F +E G  +           
Sbjct: 300 PTKAARVSNRKTLTERDAEAINKIIAEIDNADKSDVESPGFEVEYGRYMVKSKKRALDAE 359

Query: 583 SDSQAPSYDKNIE---------CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                    +  +             +  +     +     I +    E      RK+  
Sbjct: 360 KAEGIRRKRRRHDFLVKLGKTFEKQANAGVDRFRAANEASVIAEVQAKEIQDEKERKKDM 419

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           +R+RRR  T   +     +     N  +D+ +      +               E     
Sbjct: 420 QRKRRRENTVRLEMQKKLEAERKANKANDAAEKAKFLREAERAQRKIKSTKRALEGVTSP 479

Query: 694 IP 695
             
Sbjct: 480 EE 481


>gi|80477884|gb|AAI08884.1| LOC733425 protein [Xenopus laevis]
          Length = 666

 Score = 40.7 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +          +  SDS+  +  K      +DEA      S+S ++    + + +S  
Sbjct: 246 RAASDSEDEAPAKRADSDSEDEAPAKRAASDSEDEAPPKRAASDSEDEAPPKLAASDSED 305

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +R        A     A    D +  +    DS D        ++           
Sbjct: 306 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKGAASDSEDEAPPKRKV 365

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           + + D +    +    +   SS D    K
Sbjct: 366 SSSEDDAPSKQAASTSKEKKSSEDKTRGK 394



 Score = 40.7 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 43/146 (29%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +          +  SDS+  +  K      +DEA      S+S ++      + +S  
Sbjct: 220 RVASDSEDEAQAKRAASDSEDEAPAKRAASDSEDEAPAKRADSDSEDEAPAKRAASDSED 279

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +R        A     A    D +  +    DS D        ++           
Sbjct: 280 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAA 339

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712
           +++ D + P  +  + E        +
Sbjct: 340 SDSEDEAPPKGAASDSEDEAPPKRKV 365



 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 41/148 (27%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +          +  SDS+  +  K      +DEA      S+S ++    + + +S  
Sbjct: 272 RAASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKLAASDSED 331

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +R        A     A    D +  +  +  S D        +     ++     
Sbjct: 332 EAPPKRAASDSEDEAPPKGAASDSEDEAPPKRKVSSSEDDAPSKQAASTSKEKKSSEDKT 391

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK 714
                +          + +   + P  K
Sbjct: 392 RGKRAIIDSDDDDVPAKHAEEETRPKGK 419



 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 5/152 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +          +  SDS+  +  K      +DEA      S+S ++      + +S    
Sbjct: 300 ASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKGAASDSEDEA 359

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-----PSDITNHNLLENGA 683
             +R+       A     A    +  S ++       +        P+          G 
Sbjct: 360 PPKRKVSSSEDDAPSKQAASTSKEKKSSEDKTRGKRAIIDSDDDDVPAKHAEEETRPKGK 419

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              +E+   S  P  + E   + +++D    +
Sbjct: 420 ASDSEDEAPSKQPSDSEEETPAKAAADNSEDE 451


>gi|37999864|sp|Q62504|MINT_MOUSE RecName: Full=Msx2-interacting protein; AltName:
            Full=SMART/HDAC1-associated repressor protein; AltName:
            Full=SPEN homolog
          Length = 3644

 Score = 40.7 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%)

Query: 588  PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
             S     E V Q        + E  E +              +RR          +  + 
Sbjct: 1933 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1992

Query: 648  GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706
               ++          +     +     N   +E  A    +       P S  E E+++ 
Sbjct: 1993 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 2052

Query: 707  ---SSSDPIVKKTR 717
                  DP   K+ 
Sbjct: 2053 PKRDRRDPSTDKSG 2066


>gi|326672773|ref|XP_002664136.2| PREDICTED: hypothetical protein LOC100330539 [Danio rerio]
          Length = 1434

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 6/239 (2%)

Query: 484  CTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
            C       +  ++   A      + E   +      +     S +     +  +  + + 
Sbjct: 1010 CAESHVTCHTHNEKYKAKLYENPLYEQRRKLDRQAGLESQKSSVLKRKHEDDDQDDVKK- 1068

Query: 543  EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
             +++     +          +  E+        ++ HK           K  E   +   
Sbjct: 1069 -SKYNKEGKLSSNAMDTKPQYSKEEDHRDIKENDSKHKDKYKKDEYDKLKYKEEEDERAR 1127

Query: 603  LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---RRRPATDHHDAGVVSDVSSIQNV 659
            +    + +S     D+  +         RR R+R     R   DH+      D    +  
Sbjct: 1128 IKKEEEEKSRYKKDDDERNRYKKEEECSRRYRKREGESSRYEEDHYRNRDDDDDEYHRYK 1187

Query: 660  IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
             DD    Y +  D   ++  +       E            E       +     K++W
Sbjct: 1188 DDDDRYRYRKDDDRGRYSREDEKPRYDKEEDKRYKYTREVEEKSKYKGENWGKWPKSKW 1246


>gi|270009433|gb|EFA05881.1| hypothetical protein TcasGA2_TC008693 [Tribolium castaneum]
          Length = 1681

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 20/167 (11%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---------------S 611
           +G  +    +    V S       D+  E            K+E               S
Sbjct: 420 RGRSLIRDRDRATPVNSPKPEKDDDERKEDEKSGSEDKVKKKTEVKKDDEKKRKEIVENS 479

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI--QNVIDDSFDMYME 669
             +  D     ES     K   R RR   + +     +++   +   +NV  +  +  ++
Sbjct: 480 DTNSSDATDQSESAPGSSKDGGRPRRLDKSKEKKIKQIIAPEKAKTVENVKKEDEEKPVK 539

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           P ++ N+   +            S PP   P  + S+       KKT
Sbjct: 540 PKEVVNNLSQKKETKPG---ETPSKPPPQKPIAKKSDDEKKRGRKKT 583


>gi|260941388|ref|XP_002614860.1| hypothetical protein CLUG_04875 [Clavispora lusitaniae ATCC 42720]
 gi|238851283|gb|EEQ40747.1| hypothetical protein CLUG_04875 [Clavispora lusitaniae ATCC 42720]
          Length = 787

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 20/156 (12%)

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR--------------- 632
             +D +   + +D         ES +      + E+ T   ++ R               
Sbjct: 122 EDFDDDETTLQEDLDEAQAIIEESKKQNDAPHLPEQGTPKRKRGRPRKEETLKKLEQVEL 181

Query: 633 -RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD----MYMEPSDITNHNLLENGAHGFT 687
             R+R RR   +  +A   +       +  D          E  D          +    
Sbjct: 182 TPRKRARRAVVEKREAEKRNREEKEGWLSGDDDSDDVYNESEEDDTPKRKRTPKRSSASP 241

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               V I       +E+  SS  P     +  +R K
Sbjct: 242 RKSRVKIEMKEDAVIENVGSSESPFSSPKKEERRTK 277



 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 43/155 (27%), Gaps = 5/155 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K   ++ L          ++    +K        E        +   D   N   E+ T 
Sbjct: 169 KEETLKKLEQVELTPRKRARRAVVEKREAEKRNREEKEGWLSGDDDSDDVYNESEEDDTP 228

Query: 627 VIRKRRRR----RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
             ++  +R     R+ R   +  +  V+ +V S ++                     +  
Sbjct: 229 KRKRTPKRSSASPRKSRVKIEMKEDAVIENVGSSESPFSSPKKEERRTKKGRPSKQEKVT 288

Query: 683 AHGFTENYDVSIP-PVSTPEMESSNSSSDPIVKKT 716
               +      +     + + E S+    P  +K+
Sbjct: 289 KKVHSIFQMDDLEFFQDSIKSEKSSPVPSPQKEKS 323


>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
 gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
          Length = 717

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG--NRHGFLPFLEI 74
            E   ++   G IYL KV RVE      AFV  G    + G +   E+
Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFV--GLFSGKDGLVHISEL 655


>gi|115968638|ref|XP_001188393.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 299

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 39/155 (25%), Gaps = 1/155 (0%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             L      I +    +A  +   K  + + + + +   +     +   P   S      
Sbjct: 36  PHLLSTDLRIYRQKVEKAEKSPTKKSKTGTPSQANEGPKKRGRPRKNADPNDSSTDKTGT 95

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
                 +       K+R R R+    T+           + +     S      PS    
Sbjct: 96  TPARAGKTPASEGPKKRGRPRK-DAGTESEAETTGKTKETGEGTATPSQASAGTPSGRGR 154

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
                +      +        + TP   SS  ++ 
Sbjct: 155 PRKDGSTPSQALKKTPAKPMAIITPTRRSSRRAAK 189


>gi|303321129|ref|XP_003070559.1| RanBP1 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110255|gb|EER28414.1| RanBP1 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 557

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 3/150 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +  +    +  S    P   +       ++      K    E    +    ES  
Sbjct: 57  RQKLKETSIAGLSRQPSPEDQPMPSQEPTSTDDNDRGRLRRKRSYDESRDADPADAESKK 116

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                 RR+R R   +   ++      +      + +      P++  N  LL       
Sbjct: 117 EDDGGHRRKRSRD--SKEENSSDQEKEAEPIENRERTPSALRAPANEAN-KLLSPKKKRS 173

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +  D     +   E E +  + +P   + 
Sbjct: 174 RDQLDKDDLKLEKNEAEKTGQAKNPADGEK 203



 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 3/151 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q   +   +   +  +           + +       S         + S+E T   
Sbjct: 29  QAKQRCEDELPRRDVEELSEDGSGERPVRQKLKETSIAGLSRQPSPEDQPMPSQEPTSTD 88

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              R R RR+R   +  DA       +     DD         D    N  +        
Sbjct: 89  DNDRGRLRRKRSYDESRDA---DPADAESKKEDDGGHRRKRSRDSKEENSSDQEKEAEPI 145

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
                 P         +N    P  K++R  
Sbjct: 146 ENRERTPSALRAPANEANKLLSPKKKRSRDQ 176


>gi|195388756|ref|XP_002053045.1| GJ23550 [Drosophila virilis]
 gi|194151131|gb|EDW66565.1| GJ23550 [Drosophila virilis]
          Length = 2024

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 45/185 (24%), Gaps = 7/185 (3%)

Query: 540  VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---PSYDKNIEC 596
             E E R  V  N     +       +E        V+       D+            + 
Sbjct: 894  NELERRISVQKNSPAKAKKEPPDEGLEHNKNQSRNVSEAPAGAVDNVENEHRDPPNANDP 953

Query: 597  VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV----SD 652
                +        ES    +  +         +  + +  + +  +   D   V      
Sbjct: 954  KSSQDKRHETEDKESAHVAEKTVTPNNEKPAHQNGKAKLEKSKETSSTEDKKEVEVVKRK 1013

Query: 653  VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                   ++  F+   +    +     +      T N + + P       E  N + D  
Sbjct: 1014 TPPSTEELEKRFNALEKQRSSSKLESKDEAECVSTFNANEAKPEKRKQLSEGENVAKDKN 1073

Query: 713  VKKTR 717
             + T+
Sbjct: 1074 EENTQ 1078


>gi|119180052|ref|XP_001241533.1| hypothetical protein CIMG_08696 [Coccidioides immitis RS]
          Length = 557

 Score = 40.7 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 33/147 (22%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +  +    +  S    P   +       ++      K    E    +    ES  
Sbjct: 57  RQKLKETSIAGLSRQPSPEDQPMPSQESASTDDNDRGRLRRKRSYDESRDADPADAESKK 116

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                 RR+R R    ++                  S             +  +  +   
Sbjct: 117 EDDGGHRRKRSRDSKEENSSDQEKEAEPKENRERTPSALRAPANEADKLLSPKKKRSRDQ 176

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713
            +  D+ +      +   +   +D   
Sbjct: 177 LDKDDLKLEKNEAEKTGQAKHPADGEK 203



 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 3/151 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q   +   +   +  +           + +       S         + S+ES    
Sbjct: 29  QAKQRCEDELPRRDVEELSEDGSGERPIRQKLKETSIAGLSRQPSPEDQPMPSQESASTD 88

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              R R RR+R   +  DA       +     DD         D    N  +       +
Sbjct: 89  DNDRGRLRRKRSYDESRDA---DPADAESKKEDDGGHRRKRSRDSKEENSSDQEKEAEPK 145

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
                 P         ++    P  K++R  
Sbjct: 146 ENRERTPSALRAPANEADKLLSPKKKRSRDQ 176


>gi|325911060|gb|ADZ45258.1| pneumococcal surface protein C [Streptococcus pneumoniae]
          Length = 710

 Score = 40.7 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           ++      +           +       V +       L N K     + E         
Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
            +   +   +   E+  P            +       D         E  LP P  +  
Sbjct: 243 KLKEAVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           + + +            K ++   RR   T+ +    +    S   V +   ++  E + 
Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + +    N A    E+       +   + +          KK     +RK
Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404


>gi|302419735|ref|XP_003007698.1| transcription factor IWS1 [Verticillium albo-atrum VaMs.102]
 gi|261353349|gb|EEY15777.1| transcription factor IWS1 [Verticillium albo-atrum VaMs.102]
          Length = 426

 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/139 (7%), Positives = 35/139 (25%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
            ++ +    ++  +           +    +    D + E    ++  + + +  +    
Sbjct: 20  DDVEEPHEGVDGATAEDLSDVESDALSEIDENQFEDYDPETANIEDRPVAVDEDVAKTLK 79

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
                  +     + +  RR ++R   D  +A       S  +            +   +
Sbjct: 80  ASKRKQTDGDKTRKPKEGRREKKRSRADEDEAADGDFDESRPSRKSRRGAEPRPRAQKPS 139

Query: 676 HNLLENGAHGFTENYDVSI 694
                       E    +I
Sbjct: 140 PQPENEDHLSPEERRQRAI 158


>gi|149033656|gb|EDL88454.1| similar to FLJ00128 protein (predicted), isoform CRA_a [Rattus
           norvegicus]
 gi|149033657|gb|EDL88455.1| similar to FLJ00128 protein (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 1331

 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 33/145 (22%), Gaps = 5/145 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNIVSEEST 625
           P +                  D  +    +  A      SES     E +       E  
Sbjct: 113 PGEGSSTGASSDSPSGAEADPDAAVLEAPEPPAEASGEASESCLLSGEAVGGVGQGTEGP 172

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA-H 684
               +R  +  RR+       A      S+  +  D       E   + + +  E     
Sbjct: 173 PDTPRRTGKGNRRKKRAAGRGAVSRGGESTPLSPRDKEETRQPEVLSLPSPSEQEPVECS 232

Query: 685 GFTENYDVSIPPVSTPEMESSNSSS 709
              E  D   P   + E        
Sbjct: 233 LVKEKEDSGKPESESKEELKPADEK 257


>gi|8163697|gb|AAF73808.1|AF154036_1 surface protein PspC [Streptococcus pneumoniae]
          Length = 519

 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 57/231 (24%), Gaps = 8/231 (3%)

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN----QKRATIVEYEARFGVSI 550
               +     + ++    Q+    +       V          +K+A   + E R     
Sbjct: 120 KTEELTSKTKKELDAAFEQFKKDTLSTEPEKKVAEAQKKVAEAEKKAEDQKEEDRRNYPT 179

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
                +EL    F + K    +  +          +        E   +      + K +
Sbjct: 180 ITYKTLELEIAEFDV-KVKEAELELVKVKANEPRDEQKIKQAEAEVESKQAEATRLKKIK 238

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
           +  +  +      +    + + +   + +PA          +  +               
Sbjct: 239 TDREEAEEEAKRRADAKEQGKPKPAEQPQPAPAPQPEKPKPEKPAPAPAPKPENPAEQPK 298

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           ++       E      +E     +     P+ E     + P   KT W + 
Sbjct: 299 AEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGWKQE 346


>gi|84043628|ref|XP_951604.1| translation initiation factor IF-2 [Trypanosoma brucei TREU927]
 gi|33348510|gb|AAQ15835.1| translation initiation factor IF-2, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62359175|gb|AAX79619.1| translation initiation factor IF-2, putative [Trypanosoma brucei]
          Length = 833

 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 32/129 (24%)

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           +V  +E   +    E+ +P             +  A            DE  L +P  + 
Sbjct: 107 IVPDVEKVREQQKKEREAPRPKQQKQKPTQKQEEDAADERAAKAGHESDEDSLDLPVEDD 166

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            E  +      E      +    R  RR     ++  +    + +      + +      
Sbjct: 167 GEVTEPTESDAEVDEEDWEAMMERDDRREQRKINNERIRKRRAEMVEERLKAKEARKRAK 226

Query: 672 DITNHNLLE 680
           +        
Sbjct: 227 EEERRAKEH 235


>gi|71895759|ref|NP_001025690.1| protein IWS1 homolog [Xenopus (Silurana) tropicalis]
 gi|82189135|sp|Q505H7|IWS1_XENTR RecName: Full=Protein IWS1 homolog; AltName: Full=IWS1-like protein
 gi|63100474|gb|AAH94537.1| hypothetical protein MGC107786 [Xenopus (Silurana) tropicalis]
          Length = 909

 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +          +  SDS+  +  K      +DEA      S+S ++      + +S  
Sbjct: 220 RAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPPKRAASDSED 279

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +R        A     A    D +  +  +  S D        +        + G 
Sbjct: 280 EAPPKRAASDSEDEAPPKRAASDSEDEAPAKRKVSSSEDEAPSKQAFSASKKSSKKSSGD 339

Query: 687 TENYDVSI 694
           +E+     
Sbjct: 340 SEDKARGK 347



 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 42/143 (29%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +          +  SDS+  +  K      +DEA      S+S ++      + +S  
Sbjct: 207 RAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPAKRAASDSED 266

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +R        A     A    D +  +    DS D       +++          F
Sbjct: 267 EAPPKRAASDSEDEAPPKRAASDSEDEAPPKRAASDSEDEAPAKRKVSSSEDEAPSKQAF 326

Query: 687 TENYDVSIPPVSTPEMESSNSSS 709
           + +   S       E ++    +
Sbjct: 327 SASKKSSKKSSGDSEDKARGKRA 349


>gi|195340337|ref|XP_002036770.1| GM12497 [Drosophila sechellia]
 gi|194130886|gb|EDW52929.1| GM12497 [Drosophila sechellia]
          Length = 2266

 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 50/206 (24%), Gaps = 30/206 (14%)

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           G  I   +      +     +G  V   ++   +  S +    Y K  + + +       
Sbjct: 668 GKKIPTEVESNFVTEKIIDCRGKTVVEKISQRPRTPSPTTPKKYSKPSQKIPERVPETES 727

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRR------------------------------R 636
              +  E       S   T    +RR  R                              R
Sbjct: 728 EPEKDSESETKKKTSVNGTKTETERRNSRTTKTKQPLPLKEPQSKVPAAKSPRKDSLTGR 787

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           +R    +       +  +       D+         + +    +  +   T     +   
Sbjct: 788 KRDSLVEETRTTTTTTTTRQGRKPSDTNGSPSIKDRLRSSPRKQKTSPQQTRTPTPAQTR 847

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722
               +++  +SS D    +    +RR
Sbjct: 848 NPEDDVDGDSSSPDASPTRVGNERRR 873


>gi|149033658|gb|EDL88456.1| similar to FLJ00128 protein (predicted), isoform CRA_b [Rattus
           norvegicus]
 gi|149033659|gb|EDL88457.1| similar to FLJ00128 protein (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 1324

 Score = 40.7 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 33/145 (22%), Gaps = 5/145 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNIVSEEST 625
           P +                  D  +    +  A      SES     E +       E  
Sbjct: 113 PGEGSSTGASSDSPSGAEADPDAAVLEAPEPPAEASGEASESCLLSGEAVGGVGQGTEGP 172

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA-H 684
               +R  +  RR+       A      S+  +  D       E   + + +  E     
Sbjct: 173 PDTPRRTGKGNRRKKRAAGRGAVSRGGESTPLSPRDKEETRQPEVLSLPSPSEQEPVECS 232

Query: 685 GFTENYDVSIPPVSTPEMESSNSSS 709
              E  D   P   + E        
Sbjct: 233 LVKEKEDSGKPESESKEELKPADEK 257


>gi|224083852|ref|XP_002186985.1| PREDICTED: similar to BUD13 homolog, partial [Taeniopygia guttata]
          Length = 318

 Score = 40.7 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 42/173 (24%), Gaps = 5/173 (2%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
             +++       +         +  +              +     +   P  +     D
Sbjct: 34  SSDISGPAKSATRRQRHDTPDPSPPRRQRHDTPDVSPPRRQRHDTPDPSPPRRQRHDTPD 93

Query: 615 IQDNIVSEESTGV--IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           +         T      +RR+R     P+          D+S  +    D+ D+      
Sbjct: 94  VSPPKRQRRDTPDLSPPRRRQRHDTPDPSPPRRQRHDTPDLSPPRRQRHDTPDLSPPRRQ 153

Query: 673 ITNHNLLENGAHGFTENYDVSIP---PVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +   L        +  D S P      TP++             +   ++R
Sbjct: 154 RHDTPDLSPPRRQRHDTPDPSPPRRQRHDTPDLSPPRRQRHDTPDPSPPRRQR 206


>gi|221468645|ref|NP_001137754.1| prominin, isoform D [Drosophila melanogaster]
 gi|220902376|gb|ACL83207.1| prominin, isoform D [Drosophila melanogaster]
          Length = 1235

 Score = 40.7 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 44/176 (25%), Gaps = 10/176 (5%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                    +     +G   Q   ++     S  +  S +++     + +  L    +E  
Sbjct: 860  RSDRSPEHEQRSGSRGRKKQRTSSSATSGRSGKRDQSRERSTSSTARPKPPLRRTATEET 919

Query: 613  EDIQDNIVSEESTG----------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             D+ D   +                  + R R R +R        G  +   +       
Sbjct: 920  LDLADEESTPSRQQQQQPPPQRRQESDRERVRERDQRSRERELSRGRDASAMNTPVRSRS 979

Query: 663  SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +  +P D    +          E    S        +  S + +   +++   
Sbjct: 980  RQQLRHDPEDDNWGSSSGPSRANSRERDRESSQTRKILNIWQSRNKAKTPLRRQGT 1035


>gi|198467133|ref|XP_001354268.2| GA12453 [Drosophila pseudoobscura pseudoobscura]
 gi|198149521|gb|EAL31321.2| GA12453 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score = 40.7 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 39/158 (24%), Gaps = 1/158 (0%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
              +Y ++    +            ++       +E  ++DE      ++E       N 
Sbjct: 242 IDDYYYDEEDQYEDEYYERPTRRHKTRPRHRKPQVEVDYEDEYEEKRVEAEKPARRNRNR 301

Query: 620 VSEESTGVIRKRRRRR-RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             +E   +      R   RR   T       VS         +        P      N 
Sbjct: 302 YRDEEESLDEDYEERPAIRRGKPTPGPAGRKVSPPRKPGRAEERRSFNEDRPLARRRSNE 361

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                    ++ D    P    + E +     P   KT
Sbjct: 362 RRTTPSSAIDDLDEYEKPYGGTDQEEAAEEQTPQKVKT 399



 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 39/165 (23%), Gaps = 7/165 (4%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E   P +   N              ++      +        K               
Sbjct: 288 RVEAEKPARRNRNRYRDEEESLDEDYEERPAIRRGKPTPGPAGRKVSPPRKPGRAEERRS 347

Query: 624 STGVIR--KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE- 680
                   +RR   RR  P++   D           +  + + +   +    T   L E 
Sbjct: 348 FNEDRPLARRRSNERRTTPSSAIDDLDEYEKPYGGTDQEEAAEEQTPQKVKTTPKPLTEY 407

Query: 681 ---NGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTRWWKR 721
                A         + P ++ P  +      S P+ K T   + 
Sbjct: 408 ITPKAAAASVYARPRAPPKIARPVPITEKKKYSYPVQKNTATAQP 452



 Score = 37.3 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 2/161 (1%)

Query: 559 ADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
            ++ +  E+      +             +  +  +  +   +     P+   + LE+  
Sbjct: 459 EEEDYSQEQAQEDDYEQPPPPPPARNIPRRRTAAPRAEQKPTRTTLRKPVTDKKPLEEDY 518

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           D    +      RKR    R R PA D        + S     +  +          +  
Sbjct: 519 DEPAEQPEPPRKRKRPLAPRSRAPAPDVDFDDEDYEESLAPAPVATAAPARGILRSRSKA 578

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                          V     + P +    + + PI  +TR
Sbjct: 579 TTTRKPIAPRPRQPIVEEEDTAEPIISEEEAPASPIAPRTR 619


>gi|126342194|ref|XP_001379672.1| PREDICTED: similar to THO complex 2 [Monodelphis domestica]
          Length = 1601

 Score = 40.7 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 43/147 (29%)

Query: 576  NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
            +   K  +          +E     E       ++  +  ++N   E++      +    
Sbjct: 1346 SKDEKFKTVVTTTESKSAVEKERDKEPSREKDVAKETKSKENNKGGEKTPVAGSLKSPVP 1405

Query: 636  RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
            R     ++        D  S  +      D   E  + +  + + +     +++ +  + 
Sbjct: 1406 RSETSESEREQKRRKLDSHSSPSHSSTVKDNLSELKESSTKHYINHTTPILSKSKEREME 1465

Query: 696  PVSTPEMESSNSSSDPIVKKTRWWKRR 722
                 ++   +   +    K R  ++R
Sbjct: 1466 KKDLDKLRERSREREKKEDKDRKERKR 1492



 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 11/147 (7%)

Query: 572  QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            +          S S + +   N+  + +      I  +  +         E+      + 
Sbjct: 1415 EQKRRKLDSHSSPSHSSTVKDNLSELKESSTKHYINHTTPILSKSKEREMEKKDLDKLRE 1474

Query: 632  RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            R R R ++            D    +   D S +      D T     ENG  G +++  
Sbjct: 1475 RSREREKKE-----------DKDRKERKRDHSNNDREVSQDSTKRRKEENGTTGASKHSK 1523

Query: 692  VSIPPVSTPEMESSNSSSDPIVKKTRW 718
               P  S    E   + S    K    
Sbjct: 1524 SESPSDSPRSNEKEKNKSKSSGKDKGT 1550


>gi|74197989|dbj|BAE35177.1| unnamed protein product [Mus musculus]
          Length = 384

 Score = 40.7 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%)

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + R R+RR     +              +       +   E          +  +  
Sbjct: 229 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 288

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
             E         +      S     P  K TR W
Sbjct: 289 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 322


>gi|74196946|dbj|BAE35030.1| unnamed protein product [Mus musculus]
          Length = 386

 Score = 40.7 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%)

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + R R+RR     +              +       +   E          +  +  
Sbjct: 231 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 290

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
             E         +      S     P  K TR W
Sbjct: 291 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 324


>gi|156537468|ref|XP_001607160.1| PREDICTED: similar to microtubule-associated protein [Nasonia
            vitripennis]
          Length = 5401

 Score = 40.7 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 46/161 (28%)

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
               L  ++F IE       +           +  + DK I    Q E            +
Sbjct: 2538 SPSLEKEVFKIESSQEPDDVKIDVKSKSPSVEKEAADKEISPELQAEIRTDERSKSPSLE 2597

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
             + +           K   + +      +     + S+ ++    ID S    +E     
Sbjct: 2598 KEVSKKETSQEPDEFKAAEKSKSPSVEKESVKQEIASETAADAKTIDRSRSPSLEKEVAK 2657

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                 +   H  +++  +    +   + E  + S  P ++K
Sbjct: 2658 TQAATDVRIHEKSKSPSIEKDTIQDKKPEMVDQSKSPSLEK 2698


>gi|320035983|gb|EFW17923.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 557

 Score = 40.7 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 3/150 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +  +    +  S    P   +       ++      K    E    +    ES  
Sbjct: 57  RQKLKETSIAGLSRQPSPEDQPMPSQEPTSTDDNDRGRLRRKRSYDESRDADPADAESKK 116

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                 RR+R R   +   ++      +      + +      P++  N  LL       
Sbjct: 117 EDDGGHRRKRSRD--SKEENSSDQEKEAEPIENRERTPSALRAPANEAN-KLLSPKKKRS 173

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +  D     +   E E +  + +P   + 
Sbjct: 174 RDQLDKDDLKLEKNEAEKTGQAKNPADGEK 203



 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 3/151 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q   +   +   +  +           + +       S         + S+E T   
Sbjct: 29  QAKQRCEDELPRRDVEELSEDGSGERPVRQKLKETSIAGLSRQPSPEDQPMPSQEPTSTD 88

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              R R RR+R   +  DA       +     DD         D    N  +        
Sbjct: 89  DNDRGRLRRKRSYDESRDA---DPADAESKKEDDGGHRRKRSRDSKEENSSDQEKEAEPI 145

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
                 P         +N    P  K++R  
Sbjct: 146 ENRERTPSALRAPANEANKLLSPKKKRSRDQ 176


>gi|321250662|ref|XP_003191882.1| protein complex assembly-related protein [Cryptococcus gattii
           WM276]
 gi|317458350|gb|ADV20095.1| Protein complex assembly-related protein, putative [Cryptococcus
           gattii WM276]
          Length = 973

 Score = 40.7 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 4/173 (2%)

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK-NIECVWQDEALLPIPKSE 610
           V     L+   F + + S  +  V       S  Q P+                 +  SE
Sbjct: 395 VEGDNILSSPNFNLNELSASKPPVPVSRGSSSYGQHPAVVNLENAKKKIARLEGELTDSE 454

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYM 668
                 +    +       ++ ++   R  A   +  DA   ++     +  D++  +  
Sbjct: 455 KARKKAEERPKDLVDPAELRKAKKEIERLKAELKNAQDARKSAEDLLAHSGNDETGKISK 514

Query: 669 EPSDITNHNLLENGAHGFTEN-YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
               I++            ++  +       + E+       D  +K+ + W+
Sbjct: 515 LSEQISDLRENLMAVQVEKDDLEEKLKENPDSKELAKVQKEFDEQLKEKKDWE 567


>gi|188997064|ref|YP_001931315.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932131|gb|ACD66761.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 565

 Score = 40.7 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 35  KKQIKGNIYLAKVTR-VEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93
            K   G++   KV + +E     A VD G N  GF+P  EI  +   IP SD+  L +E 
Sbjct: 431 SKYKVGDVVKGKVKKLIEKG---AIVDLGENIEGFIPVSEIALERINIP-SDKLELHQEV 486

Query: 94  NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153
                  +     +T     I  D    +       ++E  +  ++          +  +
Sbjct: 487 EAKIIKIDPENKKITLSIKQILLDEEKRKKEEEKRKAEEEAKRKLLEKLESKKEETKQPE 546

Query: 154 GG 155
           G 
Sbjct: 547 GE 548


>gi|85857476|gb|ABC86274.1| RE28791p [Drosophila melanogaster]
          Length = 1085

 Score = 40.7 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 10/162 (6%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK        NT      +              +D       +     D   +  ++   
Sbjct: 6   EKDEVGGEPRNTASGKSQERDQSRGKTKDRSRERDRTRNKTREKSQARDQTRSKANDAEH 65

Query: 626 GVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME------PSDITNH 676
              + R+R   R +RR  + +       ++  S + +   S +   +       +  TN 
Sbjct: 66  TRAKSRKRSSSRDKRREKSKEKLGDKEKNEDLSKEKLEGKSTEHSEKRNESKVKNKDTNE 125

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                     +++ + S   +     ++ +    P  KK R 
Sbjct: 126 ENANKKLRERSKDRNHSKERLHE-RTQNKSEERKPEAKKVRN 166


>gi|322701294|gb|EFY93044.1| transcriptional regulator (Cti6), putative [Metarhizium acridum
           CQMa 102]
          Length = 720

 Score = 40.7 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/151 (8%), Positives = 34/151 (22%), Gaps = 3/151 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +G       N    +     +           +              +      + +   
Sbjct: 425 RGRSDSEDSNNNASIKRQRTSSRSASPPAEKQEPVDEQVSDDETETRNGAKKSKNNQQHR 484

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              ++  R R+R+ A +                 D S +M +  +        E+ +   
Sbjct: 485 EKSEKEDRERQRQEAANKRKGRAER---RRAEDSDLSEEMPLAAAKAVQQKPAESPSKEE 541

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           + +              +S+S         R
Sbjct: 542 SPSVAQPPGTPPPTHPTASSSHKRGARANKR 572


>gi|171913621|ref|ZP_02929091.1| endoglucanase Y [Verrucomicrobium spinosum DSM 4136]
          Length = 660

 Score = 40.7 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/186 (9%), Positives = 45/186 (24%), Gaps = 9/186 (4%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADK-------LFYIEKGSPVQALVNTGHKVGSD 584
            N+  A     E    ++  +     L  +          I+     Q +     K    
Sbjct: 413 KNEADAARDRLEGEAKINALMQERARLMQEALTAPDDDKRIDAMEEEQKIRREIEKETVK 472

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
            Q  +  K  +   QDEA +        E+ +    +E       ++    +  +     
Sbjct: 473 QQEEAKRKAEDQRKQDEADILAIAQAREEEAKARKEAEFEQMTPIQKIAALQ--QEKNQL 530

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                  + S  +       +       +       +       +   S       + + 
Sbjct: 531 DADAARLEESDPEQAAKKRTEAIAVGGKLREEQKKLSDDETRKADDIKSKADEEAKKRQD 590

Query: 705 SNSSSD 710
           + ++  
Sbjct: 591 AMTARQ 596


>gi|242080077|ref|XP_002444807.1| hypothetical protein SORBIDRAFT_07g028330 [Sorghum bicolor]
 gi|241941157|gb|EES14302.1| hypothetical protein SORBIDRAFT_07g028330 [Sorghum bicolor]
          Length = 508

 Score = 40.7 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 34/154 (22%), Gaps = 1/154 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+     + +    +         + ++      DE       +   ++ +     +   
Sbjct: 212 ERRKRAHSSLGHKKEENRSRHKKQHREDSSDSDNDEPQRRKQDASEDDEPRRRQQDDNEP 271

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++     RRRR            D    +   DD         D       ++    
Sbjct: 272 RRRQRDDNEPRRRRQDNGEPRRRRQDDDEPRRRRQDDDEPRRRRQDDDEPRGRRQDDEKP 331

Query: 686 FTEN-YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                 D         +       S P  +  R 
Sbjct: 332 RERGYVDRPRYDRFDVDDRKRRHHSPPDSRPKRV 365


>gi|147838879|emb|CAN63666.1| hypothetical protein VITISV_013183 [Vitis vinifera]
          Length = 1229

 Score = 40.7 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 70/265 (26%), Gaps = 32/265 (12%)

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT------IVEYE 543
               + + S    + + +E                      + N +R        +   E
Sbjct: 141 RSKSKEEKSRDGELEKVMERDSRHSDRKETNREKGHGSSDQVRNPRRRWDDADSVVKGEE 200

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP-----SYDKNIECVW 598
           + +  +                E+ +  +         G DS +      S  +      
Sbjct: 201 SNYEKADLRSGKASDPKNEGAKERNASAKTEPTESKNRGIDSNSDKGVKSSNKEERRNDA 260

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR---RPATDHHDAGVVSDVSS 655
           +        ++   ++    +  E+ +G  +  + R++R    R   ++ +    +D   
Sbjct: 261 ERSKSKNRAEAPEEDNKASPLAREDRSGREKNEKHRQQRTPTGRDVAENRERSFNTDEDG 320

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV---STPEMESSNSSSDPI 712
              + D S       +            H  +ENY+            E+E      D  
Sbjct: 321 SVWMRDKSGREVGHSNRSRTPERSG-RRHQGSENYETDYERSVGLKRKELEKDGYRDDRS 379

Query: 713 V-KKTRW-------------WKRRK 723
             ++  W             WKRR+
Sbjct: 380 KGREDSWGDRNRDREGSKESWKRRQ 404


>gi|118355820|ref|XP_001011169.1| hypothetical protein TTHERM_00145290 [Tetrahymena thermophila]
 gi|89292936|gb|EAR90924.1| hypothetical protein TTHERM_00145290 [Tetrahymena thermophila SB210]
          Length = 1504

 Score = 40.7 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 3/137 (2%)

Query: 582  GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
              + Q P +  +     +    + + +    ++ Q           + K+R R+R+ +  
Sbjct: 1320 EVEEQTPKFISSQIETEKQSQKIEVEEQLIEQESQQVETDVTQNLSVSKKRERKRQPKKK 1379

Query: 642  TD---HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
             D        +     S +   D       +  +   +   + G        +++     
Sbjct: 1380 ADLNLEQKQSISEKAISKKRNQDKDEKRQQKSKNQKVNAKQKKGKDNEQTIKNLNSENEQ 1439

Query: 699  TPEMESSNSSSDPIVKK 715
              +  S N   D   K+
Sbjct: 1440 DQKSSSINEQQDDESKE 1456


>gi|189238078|ref|XP_971743.2| PREDICTED: similar to DNA helicase recq5 [Tribolium castaneum]
          Length = 1707

 Score = 40.7 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/229 (7%), Positives = 61/229 (26%), Gaps = 12/229 (5%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           +S+ E                ++       K   + + +    + I+  +      +   
Sbjct: 638 KSLREEEDLKKTDEETKPIEEELKKRKQTDKEEILKKCDEE-EIKISESVDETKKTEAES 696

Query: 565 IEKGSPVQALV---NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
           +E+                     +     K  E + + E +    K+E  +  + +   
Sbjct: 697 VERLKKCDEEELRKAESIDERKKIEVEKLKKRDEELKKAELIDEKKKTEVDKSKKRDEEE 756

Query: 622 EESTGVIRKRRR------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
            +    I ++++      ++R R+      +      V   + +  ++ +   +      
Sbjct: 757 LKKAESIDEKKKIEAEKLKKRDRKLCEVEQEVKKGETVDENEKIKLETVEKSKKQLLKKT 816

Query: 676 HNLLENGAHGFTENYDVSIPPVST--PEMESSNSSSDPIVKKTRWWKRR 722
             + +       +              + E  +        + +  K+R
Sbjct: 817 EPMKDETCEKLKKREKKLTEENDEKLKKREDESHEKKKRDDEIKQKKKR 865


>gi|327300537|ref|XP_003234961.1| hypothetical protein TERG_04012 [Trichophyton rubrum CBS 118892]
 gi|326462313|gb|EGD87766.1| hypothetical protein TERG_04012 [Trichophyton rubrum CBS 118892]
          Length = 645

 Score = 40.7 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 35/151 (23%), Gaps = 1/151 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             V A V             +     E V +        +S +     D     E T   
Sbjct: 152 ETVPAPVTELAVEDVTPALAAPAPEPEPVKEPVQEPVKDESVNKSPSADIEAIREDTDES 211

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           RKR+RR +   P+               Q       ++  E        L          
Sbjct: 212 RKRKRRSQTPPPSPRSIALKKARLEEEQQQSRSTQEEIKGEERKEEQEALAAAPVIAEPP 271

Query: 689 NYDVSIP-PVSTPEMESSNSSSDPIVKKTRW 718
             D  +     TP        ++    K R 
Sbjct: 272 ARDTDVEMKEGTPPAPEPKQEAEEDESKDRV 302


>gi|325509755|gb|ADZ21391.1| recombination and DNA strand exchange inhibitor protein
           [Clostridium acetobutylicum EA 2018]
          Length = 806

 Score = 40.7 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 71/218 (32%), Gaps = 8/218 (3%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIV----EYEARFGV--SINVVIGIELADKLFYIEK 567
             ++   +     +  Y++ + R  I     E+E       + +V     L    F  E+
Sbjct: 502 GKSNAFEISKRLGLSDYIIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKAEFLKEQ 561

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +          ++++  +  +      +          + L+D+++      S+  
Sbjct: 562 AEKFKEKYEEKVSSITETREKALHEGRREAKKIIEEAKSEADKILKDMREMERLGYSSEA 621

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID--DSFDMYMEPSDITNHNLLENGAHG 685
            ++ +  R++ +   ++ +  +          +      +    PS      ++      
Sbjct: 622 RQRLQESRQKLKEKLNNAEESLNISERDQGEALKSVKEGEEVFIPSLNMKGIVISTQDSK 681

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   I  ++    +   ++++PI KK +  K+R+
Sbjct: 682 GEVGIQAGIMKINVKLKDLRKTNNNPISKKEKAVKKRE 719


>gi|330922572|ref|XP_003299887.1| hypothetical protein PTT_10986 [Pyrenophora teres f. teres 0-1]
 gi|311326244|gb|EFQ92021.1| hypothetical protein PTT_10986 [Pyrenophora teres f. teres 0-1]
          Length = 9819

 Score = 40.7 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 37/163 (22%), Gaps = 1/163 (0%)

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
            ++V      +    IE+  P     +                      +         S 
Sbjct: 2095 SIVRDPRDIEPSRSIER-DPRDIEPSRIIDRNPRDIELPRPSETSRNGEPSRSAEPQHSP 2153

Query: 611  SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
                  D+  S ES+     +R     R   +        S  +S       S +    P
Sbjct: 2154 ESTRWSDSQRSPESSRYSDPQRSPESTRYSDSQRSPESTRSTEASRSTQPLRSTEPTRAP 2213

Query: 671  SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                      +     + +      P  +   +  +S+   + 
Sbjct: 2214 EPSRYAEPSRSSEPSRSVDQARDQSPARSTSQDKESSAVKAVT 2256


>gi|284030940|ref|YP_003380871.1| RNA binding metal dependent phosphohydrolase [Kribbella flavida DSM
           17836]
 gi|283810233|gb|ADB32072.1| RNA binding metal dependent phosphohydrolase [Kribbella flavida DSM
           17836]
          Length = 590

 Score = 40.7 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 1/125 (0%)

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                        D+      ++ A+L     ES +   +     E       RR    R
Sbjct: 59  EAATAVAEAKSVGDRLRREAEEEAAVLRARAKESEQRTDELRRQAEERAQEADRRADEVR 118

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-ENGAHGFTENYDVSIPP 696
           R+      +    ++  +     +   +      D+    L  E   H  TE  +     
Sbjct: 119 RQAEDRASEVRRDAEQRATAVRREAESEAQSIRDDLREQRLEMERREHRLTEREERLDEQ 178

Query: 697 VSTPE 701
               E
Sbjct: 179 HRAIE 183


>gi|218661253|ref|ZP_03517183.1| probable ribonuclease protein [Rhizobium etli IE4771]
          Length = 112

 Score = 40.7 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            R R RR+PA    +A VV   ++     +                  +        N  
Sbjct: 20  PRGRGRRKPAASPVEALVVEAEAAPAAEAEPELAEASADLQTPAQEEAKPVRANRESNIA 79

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            S P V +   E+  S  D   KK  WW+RR
Sbjct: 80  SSEPTVKSTRSENGESD-DGKPKKAGWWQRR 109


>gi|325120688|emb|CBZ56243.1| hypothetical protein NCLIV_066680 [Neospora caninum Liverpool]
          Length = 403

 Score = 40.7 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 27/107 (25%)

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                 +  A       +       +   E      R+      RRR +    + G    
Sbjct: 6   AHAARSRQAATPRASPCKEGNPPAASEAGENVKKSRRRGTADSPRRRDSRQSDEKGKKRR 65

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
           + +    + DS +              E  A    +    +  P+ST
Sbjct: 66  LPASSPAVSDSGEQDEGRQKARKRGSREEVASKVAKPETRTKQPLST 112


>gi|320105186|ref|YP_004180777.1| hypothetical protein Isop_3672 [Isosphaera pallida ATCC 43644]
 gi|319752468|gb|ADV64228.1| hypothetical protein Isop_3672 [Isosphaera pallida ATCC 43644]
          Length = 435

 Score = 40.7 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/164 (7%), Positives = 39/164 (23%), Gaps = 3/164 (1%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
           ++         YI++ + +   +    +    +     D+  +      A  P       
Sbjct: 155 IVNPSKGLAELYIQRAAILNPYLTAARQAAEAAAPKPADEPKKEETPKPADEPKTDEPKP 214

Query: 613 EDIQDNIVSEESTG---VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
               + +  EE+       +K    +    P  +          ++ +   +++     E
Sbjct: 215 APSAEEMKKEEAPKPADEPKKEEAPKPADEPKKEEAPKPADEPKTADEPKKEEAPKPADE 274

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           P         E          D      +    +   +      
Sbjct: 275 PKTADEPKKEEAPKPADEPKTDEPKKEEAPKPADEPKTDEPKKE 318


>gi|325141927|gb|EGC64367.1| IgA-specific serine endopeptidase [Neisseria meningitidis 961-5945]
 gi|325197920|gb|ADY93376.1| IgA-specific serine endopeptidase [Neisseria meningitidis G2136]
          Length = 1552

 Score = 40.7 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
               R   E   +  A      + +++     ++K     E  A+  V             
Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617
                E+ +   A+        +  QA    +  E   +   L    K+E+     +    
Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144

Query: 618  -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663
                             EE     + + +RR RR    +   DA   +     +N   D+
Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             D    P D      +        +    +       E  S
Sbjct: 1205 SDYEKIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245


>gi|13183005|gb|AAK15023.1| IgA1 protease [Neisseria meningitidis]
          Length = 1552

 Score = 40.7 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
               R   E   +  A      + +++     ++K     E  A+  V             
Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617
                E+ +   A+        +  QA    +  E   +   L    K+E+     +    
Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144

Query: 618  -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663
                             EE     + + +RR RR    +   DA   +     +N   D+
Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             D    P D      +        +    +       E  S
Sbjct: 1205 SDYEKIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245


>gi|328778431|ref|XP_001121122.2| PREDICTED: hypothetical protein LOC725251 [Apis mellifera]
          Length = 903

 Score = 40.7 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 56/178 (31%), Gaps = 2/178 (1%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
           ++    ++    DV L +       I + E    + I   + I        IEK   ++ 
Sbjct: 599 FSPKKEVIEDVVDVKLVMKEFDDDQIQKIENEKEIEIKTNVDISSIQNENEIEKDIIIET 658

Query: 574 LVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             N      +D     +D+    E + ++   +     +  E  ++    +++      +
Sbjct: 659 ENNCTDNDKTDKSICEFDENMRSEEIQKNSDEIYNNNEDIQEKYKEKKQVKDNQENSETK 718

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
              R++    T+          ++     ++  D+    +   N N  +N      E 
Sbjct: 719 MEERKKNDDITEREKEREKEKENNDIKEREEKNDIEDRENVKKNINNKDNEKEKEQEE 776


>gi|171688302|ref|XP_001909091.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944113|emb|CAP70223.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1253

 Score = 40.7 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/160 (7%), Positives = 39/160 (24%), Gaps = 4/160 (2%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           +    E     Q       +        +  K      +          E+    ++   
Sbjct: 563 EEIEAENQQDAQRKAKKAKEAQRRKDRAARKKEALAEEKARKEAEKAAEEAARKEEEERK 622

Query: 621 SEESTGVIRKRRRRRRRRRPATD----HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
             E+     ++R+RR  ++ A +      +A     +   +     + +           
Sbjct: 623 QAEAKQRAEEKRKRREAQKKAEEEERLRKEAERQRKIHEREENERKAREAKEREKKAREE 682

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             L        E  +           + + + ++   ++ 
Sbjct: 683 ARLREKEQKEREARERREQQERDKREKEAKAKAERESREQ 722


>gi|82914873|ref|XP_728880.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485476|gb|EAA20445.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 470

 Score = 40.7 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/225 (7%), Positives = 61/225 (27%), Gaps = 2/225 (0%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552
           IR    +   + +  +E +   +  +  +  + ++ L  + +K+  I   E         
Sbjct: 100 IRDLKKINEELKKKTDEIMKNNSKSDKKLPENDNLYLKEIEEKKKHIENKEKELKEKQKD 159

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
           +   +        ++    +       K   + +    +   + V   +  +   + E  
Sbjct: 160 LEDKQRDIDNK--QRELDEKRKETEHIKKELEGKNKEVEDKKKEVESKQKEVESKQREVE 217

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
              ++    ++     +K    +++              +V + Q  ++           
Sbjct: 218 SKQKEVESKQKEVESKQKEVESKQKEVETKQKEVESKQKEVETQQKEVESKQKEVESKQK 277

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                  +               P    +M+ +       +K+ +
Sbjct: 278 EVESKQKDIENREKESKETKVETPNEIEQMKKNIEQKQKEIKELK 322


>gi|308470437|ref|XP_003097452.1| hypothetical protein CRE_16968 [Caenorhabditis remanei]
 gi|308240160|gb|EFO84112.1| hypothetical protein CRE_16968 [Caenorhabditis remanei]
          Length = 1561

 Score = 40.7 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 50/158 (31%), Gaps = 17/158 (10%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +E+     +       + +   +   D + E   +++      +  + E IQ++    + 
Sbjct: 1   MEEEKASTSDEGPSVTIAAPPYSFQNDVDKEDSRREKDRERKREKRANESIQESQERLQQ 60

Query: 625 TGVIRKRRR-------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
               RK+++       ++R+R+   D        +  + ++V                 N
Sbjct: 61  ASEYRKKKKAAETEEEKKRKRQEEADKKRLIRSQESENHKSVRRARDA----------EN 110

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              +      ++ D      S  +    +  +D   K+
Sbjct: 111 KRNSVLQDSQQDADARKNRDSQRKALDRDQETDEQRKE 148


>gi|221090771|ref|XP_002156013.1| PREDICTED: similar to Hepatoma-derived growth factor [Hydra
           magnipapillata]
          Length = 593

 Score = 40.7 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/182 (8%), Positives = 56/182 (30%)

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
            +    ++           +D     +N++++     E +    I      +L  +   I
Sbjct: 305 KLHREKMKKERDIEKKKKINDDNDVNMNEEKSEEKITEDKIETDIQTKNDKKLQQEEKKI 364

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +K    +  ++   +         + +  + + ++       K +  +  +  +  E+S+
Sbjct: 365 DKKQQEEKKIDKKQQKEEKKIDKKHQQEEKKIDKEIQKDEKKKLKEKKSKEKKVKEEKSS 424

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
            V  K+ +R+ +       H         +I +  +   +     +     +  ++    
Sbjct: 425 KVDEKKEQRKTKDLKTEKKHIKENGKKKENISSEENKEREQKAIEAMKRITDDNKDATVA 484

Query: 686 FT 687
             
Sbjct: 485 EH 486


>gi|221129661|ref|XP_002154419.1| PREDICTED: similar to Centromere protein C 1 (CENP-C) (Centromere
           autoantigen C) [Hydra magnipapillata]
          Length = 500

 Score = 40.7 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 51/196 (26%), Gaps = 17/196 (8%)

Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQAL------VNTGHKVGSDSQAPSYDKNIECVW 598
                I  +   +       I K S               ++    +   S   N   + 
Sbjct: 18  ENNFFICFLSNPKANRNEVSIHKESAKNNKSKLNSNKTLSNQNEVSTPKESAKNNKSKLN 77

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
            ++ L    +  + ++   N  S+ ++     +R     +   +   ++   +      +
Sbjct: 78  SNKTLSNQEEVLAPKESAKNNKSKLNSKSDDTKRTSNPNQNEVSTPIESAGNNKSKLNSS 137

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM-----------ESSNS 707
                 +  + P +   +N           +        +  E+             S+ 
Sbjct: 138 KRLSYQEEVLAPKESAKNNQKNKSKLNSKSDDIKRTSNPNEREVLTPKESAKNNKSDSSI 197

Query: 708 SSDPIVKKTRWWKRRK 723
           S     K+T    RRK
Sbjct: 198 SKSGDNKRTSKPYRRK 213


>gi|25012455|gb|AAN71333.1| RE23622p [Drosophila melanogaster]
          Length = 1002

 Score = 40.7 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 2/153 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P Q    +  +   DS +     + E  W+D        S   +         + +   +
Sbjct: 667 PSQRRQLSPGRKRQDSPSKKRPNSTERKWRDSPERKRDDSHDRKREASPNWKRDDSPARK 726

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFT 687
           ++    R+R  + D           S     +DS     + SD    +  +    + G  
Sbjct: 727 RKDSANRKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKDSDKKRQDSPVKRQESPGRK 786

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                      +P+    +S +    + +   +
Sbjct: 787 RQDSPERKRRDSPDRRRKDSPARRRQESSGRRR 819


>gi|268555766|ref|XP_002635872.1| Hypothetical protein CBG01089 [Caenorhabditis briggsae]
          Length = 696

 Score = 40.7 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 5/154 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           GSP      +     S         + E   Q    +  P S        +    +S G 
Sbjct: 529 GSPEARKPGSPDPGNSGRPEARKPGSPEARIQGIPEVQEPGSPEARK-PGSPDPRDSGGP 587

Query: 628 IRKRRRRRRRRRPAT----DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             ++      R+P +    +          S    +     D   E  +     + E+  
Sbjct: 588 GARKPGSPEARKPGSPNPGNSGRPEAQKPGSPEAQIQGIPEDRKPESPEARIQGIAEDRK 647

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            G  E     IP V  P    +     P  +K  
Sbjct: 648 PGSPEARIPGIPEVQEPGSPGARKPRSPEARKPG 681


>gi|74197265|dbj|BAE39660.1| unnamed protein product [Mus musculus]
          Length = 364

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%)

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + R R+RR     +              +       +   E          +  +  
Sbjct: 209 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 268

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
             E         +      S     P  K TR W
Sbjct: 269 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 302


>gi|260833358|ref|XP_002611624.1| hypothetical protein BRAFLDRAFT_117138 [Branchiostoma floridae]
 gi|229296995|gb|EEN67634.1| hypothetical protein BRAFLDRAFT_117138 [Branchiostoma floridae]
          Length = 1435

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 37/168 (22%), Gaps = 15/168 (8%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI------ 619
             +G   Q   N   K G+  +        E             +       +        
Sbjct: 1211 TRGRRAQGNKNEAPKKGTQRKRTVEPTEEEESPAKRPRTAAKPAAKTRLRAEADRQEEEE 1270

Query: 620  --VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
               S   T      ++    R+   +   A      +     +        +P+  T+  
Sbjct: 1271 EEDSGSDTEESGPSKKP---RKAPANRSAAAERRKSNENVTPVATRTSPRKQPTTRTSPR 1327

Query: 678  LLENGAHGFTENYDVSIP----PVSTPEMESSNSSSDPIVKKTRWWKR 721
                     +       P      ++P          P+ K  R  +R
Sbjct: 1328 KASQSGTSRSRGAAPPAPSGSRKGASPRKAPPKKEVAPVKKNVRNVRR 1375


>gi|194398729|ref|YP_002037217.1| translation initiation factor IF-2 [Streptococcus pneumoniae G54]
 gi|238690803|sp|B5E266|IF2_STRP4 RecName: Full=Translation initiation factor IF-2
 gi|194358396|gb|ACF56844.1| translation initiation factor IF-2 [Streptococcus pneumoniae G54]
          Length = 930

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 45/170 (26%), Gaps = 9/170 (5%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-------DEALLPIPKSESLEDI 615
           + I K    ++               S+  ++E             A  P  +++     
Sbjct: 7   YEIAKELGKESKEVVARAKELGLDVKSHSSSVEEAVAAKIAASFKPAAAPKVEAKPAAPK 66

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
                  E +   +    +   +           V+     +N   +      E ++   
Sbjct: 67  VSAEKKAEKSEPAKPAVAKEEAKPAEPVAPKTEKVAAKPQSRNFKAEREARAKEQAERRK 126

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS--DPIVKKTRWWKRRK 723
            N   N       N   +       + +S+  +   +   KK +  ++R+
Sbjct: 127 QNKGNNRDQQQNGNRQKNDGRNGGKQGQSNRDNRRFNDQAKKEQGQQKRR 176


>gi|321468839|gb|EFX79822.1| hypothetical protein DAPPUDRAFT_224986 [Daphnia pulex]
          Length = 724

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 45/170 (26%), Gaps = 4/170 (2%)

Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           + V    +L  K    +         +         +    D   + V     L   P +
Sbjct: 201 VKVKTDDKLESKSCAKDGAKKTDKTESKPRAKEESKKPTKTDSKADNVSAKSHLGARPHA 260

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
           +     +    +E        +RR+ R R P      +      S  +N           
Sbjct: 261 D-DRRTRKTETNESRRSHPSPKRRKSRSRSPIGRRPLSRRSRSRSPPRNRARIRP-RSRS 318

Query: 670 PSDITNHNLLENGAHGFTENYDVS--IPPVSTPEMESSNSSSDPIVKKTR 717
           P+    ++   + +    +        P +   ++      +   +++T 
Sbjct: 319 PARSPPYHRKRSRSPAIQKRPATPPKSPRIDKAQLLEFARQNLKRMQETG 368


>gi|241760300|ref|ZP_04758395.1| translation initiation factor IF-2 [Neisseria flavescens SK114]
 gi|241319178|gb|EER55656.1| translation initiation factor IF-2 [Neisseria flavescens SK114]
          Length = 964

 Score = 40.3 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/193 (7%), Positives = 50/193 (25%), Gaps = 10/193 (5%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
             ++   +   EA+    +      + ++K    EK    +         G   +     
Sbjct: 164 KKEEAKPVEAVEAKAEAKVEAKADNKPSEKSVEAEKPVEAKKPAKAKQDKGGKGKEAKKA 223

Query: 592 KNIECVWQDEALLPIPKSESLEDI----------QDNIVSEESTGVIRKRRRRRRRRRPA 641
                    + ++   +    ++           Q+ ++ E+     R+   +++  + +
Sbjct: 224 AKPAAPAVPQPVVSEEEQAQRDEEARRAAALRAHQEALLKEKQERQARREAIKQQAVQDS 283

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
               +A         +     S +   E +         +                   +
Sbjct: 284 KPTKEAKSGERHKPAEKAKAASGEGKSEHNARGKKEDRRDRDEENQGRNAKGKGGKGGRD 343

Query: 702 MESSNSSSDPIVK 714
             ++ +  D  V+
Sbjct: 344 RNNARNGDDERVR 356


>gi|241244950|ref|XP_002402398.1| hypothetical protein IscW_ISCW004750 [Ixodes scapularis]
 gi|215496334|gb|EEC05974.1| hypothetical protein IscW_ISCW004750 [Ixodes scapularis]
          Length = 637

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 26/131 (19%), Gaps = 8/131 (6%)

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR--RRRRRRRRPATDHHDAGVVS 651
            E    D       K  S ED          +   ++R  + +   R    D  +     
Sbjct: 23  RESGQGDVPQQDGGKKGSAEDGVTRWDPSRQSEEEKRRSGQGKEAGRDRREDKREGDKTP 82

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                    D S +           +               S P    P         D 
Sbjct: 83  SDRKHTARSDRSHERSSGSRKAVPRSEPRKSESSRRTESRRSEPRKPEPRRLEPKRDVDS 142

Query: 712 IVKKTRWWKRR 722
                 W + R
Sbjct: 143 ------WREPR 147



 Score = 37.3 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 33/136 (24%), Gaps = 4/136 (2%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           + +  P +       + G   +A    +  +             + S    + +  S ++
Sbjct: 45  VTRWDPSRQSEEEKRRSGQGKEAGRDRREDKREGDKTPSDRKHTARSDRSHERSSGSRKA 104

Query: 625 -TGVIRKRR---RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 ++    RR   RR      +   +     + +  +        P      +L  
Sbjct: 105 VPRSEPRKSESSRRTESRRSEPRKPEPRRLEPKRDVDSWREPRLPRADPPRADPPRDLKR 164

Query: 681 NGAHGFTENYDVSIPP 696
                 T +       
Sbjct: 165 RAPESDTRSPAAKRSK 180


>gi|198426590|ref|XP_002124688.1| PREDICTED: similar to GI13733 [Ciona intestinalis]
          Length = 504

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 72/272 (26%), Gaps = 38/272 (13%)

Query: 432 EKKNNRSVEKKLKESLKKDR----ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
            ++NNR+V   +  + + DR     R  +   +   L+   R R  ++ +  T       
Sbjct: 245 NEQNNRNVPNTVIITARPDRYVNRRRATIRPPTRNNLM---RPRPPTNTVPRTKPKRESK 301

Query: 488 KGAG---------YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK--- 535
           +G G          +     + + I+        +          H  +  Y+  +K   
Sbjct: 302 QGLGGGAVAGIVVGLLLVLVLVVGIMYRAISKRKKQNPPTQQHRQHQAL-NYIQIEKPRI 360

Query: 536 ----------RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
                           +         +V+  ++   +  ++      +  +  H   S+ 
Sbjct: 361 ETTNQGSTDGSHDNAAFTKSHFAQPVLVVNEDIHPPVTVVKSDETHTSQPSGKHNQSSED 420

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
             P          +  +     KS S                  +R+ R R+R  +    
Sbjct: 421 PEPRKAHRRHSAGERRSRAARVKSPSKSKT--------DRETRDRRKTRSRKRDRSPIKR 472

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
            +   +  S  ++                N  
Sbjct: 473 KSEKSNKRSRPKDERRPRNTSKSNMDRPKNRA 504


>gi|195131207|ref|XP_002010042.1| GI15699 [Drosophila mojavensis]
 gi|193908492|gb|EDW07359.1| GI15699 [Drosophila mojavensis]
          Length = 2164

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 5/161 (3%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQ-APSYDKNIECVWQDEALLPIPKSESLED 614
             + D+   +E      +   +  +  ++S  A S   +       E   P    ES++D
Sbjct: 136 ESVKDEHEKLESVKGENSGEPSRRESVAESTKAESVKDDKSLPVSKEPSRPASAVESVKD 195

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG----VVSDVSSIQNVIDDSFDMYMEP 670
             +   S +        RR         D+        V  + S   + ++   D++ +P
Sbjct: 196 EHEKPESVKDEKSGEPSRRESVAESAKPDNLKDEKSLPVSKEPSRPGSAVESVKDVHDKP 255

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
             + +    E                     +  S  +S P
Sbjct: 256 ESVKDEKSGEPSRRESVAESIKPDSLKDDKSLPVSKEASRP 296



 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 33/162 (20%), Gaps = 4/162 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E         +    V  +   P           ++  +           +++       
Sbjct: 54  ESTKAESLKDDKSLPVSKEPSRPGSAVESVKEEHEKPEIVNDDKSGEPSRRESGAESAKP 113

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             ++  +     + P+        V D       +           +    +        
Sbjct: 114 DSLKDEKSLPVSKEPSRPGSAVESVKDEHEKLESVKGENSGEPSRRESVAESTKAESVKD 173

Query: 686 FTENYDVSIP--PVSTPEMESSNSSSDPIVK--KTRWWKRRK 723
                    P  P S  E           VK  K+    RR+
Sbjct: 174 DKSLPVSKEPSRPASAVESVKDEHEKPESVKDEKSGEPSRRE 215


>gi|170066038|ref|XP_001868104.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167862710|gb|EDS26093.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 377

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/158 (7%), Positives = 33/158 (20%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                +   I+         +   K        +  KNI    ++       ++   +  
Sbjct: 115 NNRTTEQQNIKTTELQTNRTSVEKKNRKREHQKNIRKNIRETSEEYPENRTFENIRQKSE 174

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             N  +EE     ++ ++ RR+                   +N   +      +      
Sbjct: 175 DQNRRTEEQKNRRKEEQKNRRKEEQKNKSAKEQNNRRKEEQKNRRTEHLKTLEKNQKTRT 234

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                                    E ++  +      
Sbjct: 235 EEQKNRRTEEQKNRRTEEQKNRRAEEQKNRRTEEQKNK 272


>gi|83682327|emb|CAJ28153.1| immunoglobulin G binding protein A precursor [Staphylococcus
           aureus]
 gi|83682329|emb|CAJ28154.1| immunoglobulin G binding protein A precursor [Staphylococcus
           aureus]
          Length = 507

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/166 (7%), Positives = 41/166 (24%), Gaps = 6/166 (3%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     ++ +             +N       +       ++     +++ 
Sbjct: 267 EQRNGFIQSLKDDPSVSKE------ILAEAKKLNDAQAPKEEDNKKPGKEDGNKPGKEDG 320

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P  +  +    +D     +  G    +   ++  +   +       +      N    
Sbjct: 321 NKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDNKKPSKEDGNKPGKEDGNKPGKEDNKKPS 380

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             D      +  N    E+G     E+ +           +   + 
Sbjct: 381 KEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNK 426


>gi|301111203|ref|XP_002904681.1| Crinkler (CRN) family protein [Phytophthora infestans T30-4]
 gi|262095998|gb|EEY54050.1| Crinkler (CRN) family protein [Phytophthora infestans T30-4]
          Length = 731

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/115 (7%), Positives = 23/115 (20%)

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
           A    +      +  A     ++   +  +     E       + R R R+R       D
Sbjct: 174 AEENREKNRERDRKRAEENREENRERDRKRAEENRERDRKRAEENRERDRKRAEENRERD 233

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                +   +        +   E          +          +         +
Sbjct: 234 RKQAKEFRRLAEETRKLAEENRERDRKRAEETRKLAEEIRKLAEEKRELDRKRAQ 288



 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 19/112 (16%), Gaps = 13/112 (11%)

Query: 623 ESTGVIRKRRRRRRRRR-------------PATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
           E      + R R+R                      D     +         +       
Sbjct: 175 EENREKNRERDRKRAEENREENRERDRKRAEENRERDRKRAEENRERDRKRAEENRERDR 234

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   L E       EN +            +         K+    KR
Sbjct: 235 KQAKEFRRLAEETRKLAEENRERDRKRAEETRKLAEEIRKLAEEKRELDRKR 286


>gi|261367256|ref|ZP_05980139.1| putative M23 peptidase domain protein [Subdoligranulum variabile
           DSM 15176]
 gi|282570858|gb|EFB76393.1| putative M23 peptidase domain protein [Subdoligranulum variabile
           DSM 15176]
          Length = 721

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 39/184 (21%), Gaps = 20/184 (10%)

Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583
           H  V      +K+      E               +      E+  P    +    +   
Sbjct: 30  HPAVKATPEQEKKEPENVLEETAEQP----PEPAASQPDVVTEEAKPAGEEIEPAAEDTP 85

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
                           D         E  E  Q     +E+     ++         A +
Sbjct: 86  AQ--------------DAVAAEPESPELAEPAQPVETVQEAEDTPAQKAEESADEEAAAE 131

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFTENYDVSIPPVSTPE 701
              A    +    Q++     +      +    N           TE+ + S  P     
Sbjct: 132 PEAAVPEGETEGPQSLEPSQTEQTSAKEESAPENPGPTPPAEVETTESPEKSEEPAIPEP 191

Query: 702 MESS 705
            E +
Sbjct: 192 SEKT 195


>gi|260795104|ref|XP_002592546.1| hypothetical protein BRAFLDRAFT_108418 [Branchiostoma floridae]
 gi|229277767|gb|EEN48557.1| hypothetical protein BRAFLDRAFT_108418 [Branchiostoma floridae]
          Length = 1923

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/170 (8%), Positives = 39/170 (22%), Gaps = 9/170 (5%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                     + +++ +             +++Q    D       ++   +    S   
Sbjct: 288 KADDHHGHDEY-LQETTAPDGDRRKAECHPTETQGEDVDVKKALESEEATSIQGSNSAPE 346

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS-DVSSIQNVIDDSFDMYMEPS 671
                  + EE    +++   +    +  T          +    +   + S     +P 
Sbjct: 347 RRQSGTELEEEEPDTMQEMSSKCNDDQKKTCSQTKKDAKMEHKPSEQKNEPSVGNGNQPK 406

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                           +  +   P          + +SD   KK    K 
Sbjct: 407 MSKRQRKKMEKKAKAEQQKNSVEP-------VKKDGASDRQRKKAGKGKP 449


>gi|114645183|ref|XP_001165027.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting
           protein isoform 4 [Pan troglodytes]
          Length = 1148

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 424 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 483

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 484 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 537

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 538 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 595

Query: 720 KRRK 723
            R +
Sbjct: 596 SRER 599


>gi|156547096|ref|XP_001602419.1| PREDICTED: similar to mediator of DNA damage checkpoint 1 [Nasonia
            vitripennis]
          Length = 2649

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 7/146 (4%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGV 627
              +   N      S S  P           + + +  P SE  ++I +     S E    
Sbjct: 2285 DAEKDRNVSLANKSSSSRPVRQTRARKASTNVSTVDTPSSEESQEIAEILQNSSGEEANR 2344

Query: 628  IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             RKR  RR     A +  ++   +  S   N  +D+              +        +
Sbjct: 2345 SRKRNARR-----AKNTPNSSEDTQDSESNNTQEDNVFERPVSRPKRARLVKSTKNKSSS 2399

Query: 688  ENYDVSIPPVSTPEMESSNSSSDPIV 713
            +N       + T   + S++S     
Sbjct: 2400 QNNLPVDEEIRTRSPQQSSTSQKRTP 2425


>gi|157125581|ref|XP_001654397.1| hypothetical protein AaeL_AAEL010246 [Aedes aegypti]
 gi|108873576|gb|EAT37801.1| conserved hypothetical protein [Aedes aegypti]
          Length = 569

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 36/162 (22%), Gaps = 4/162 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +          +     +      Y       +  +   P  +  + E        E   
Sbjct: 171 DSDESPPRRKESSPGRRTTRVEDDYPSRKAKGYDSDHSPPRKRGNNDESPPRRSHKERKR 230

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT----NHNLLEN 681
               +   RR RR+  +D        D S       DS      P   +    N    E 
Sbjct: 231 RNSDESPPRRSRRQSDSDQSPPRKRQDDSRKARRRKDSDSDVSPPRRSSKPDHNRVKQER 290

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +E     +        ES    +      +     R+
Sbjct: 291 SPSRASEFSLRRVKQEPPDSDESPPRRTRRRSPSSDQSPPRR 332


>gi|304310507|ref|YP_003810105.1| Translation initiation factor IF-2 [gamma proteobacterium HdN1]
 gi|301796240|emb|CBL44448.1| Translation initiation factor IF-2 [gamma proteobacterium HdN1]
          Length = 901

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 3/143 (2%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
               + +   S         + +   P       +  ++    E+      +++R   RR
Sbjct: 158 AVAKAQALETSAPAEAPKPSKGQKPKPAEAGPVEQKRKEKSAEEDRRSAEEQKKREENRR 217

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           + A +      + D   I   ++        PS     +  +       E+        S
Sbjct: 218 K-AEEELKRKTMEDAKRIAEQLES--RRSDSPSAEELLDSSDLIVRRAYEDSFDEEEKQS 274

Query: 699 TPEMESSNSSSDPIVKKTRWWKR 721
                S+   S     + +  +R
Sbjct: 275 RRRRGSNRKKSSKSQPERKLVQR 297


>gi|325116127|emb|CBZ51681.1| hypothetical protein NCLIV_014750 [Neospora caninum Liverpool]
          Length = 1630

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 40/159 (25%), Gaps = 6/159 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P         +     +  +   + E     E      + + L +   +    +S     
Sbjct: 11  PSNQEPRRKRQKTKPRKGTNNPADQEKGNAQEKRRRDTEKDDLREALGDDRQGQSVEDRE 70

Query: 630 KRRRR------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           ++  R      R R +       AG            D S +     +         +G 
Sbjct: 71  EKEARSASVSVRGREQIQAMKETAGAEGRRQRRAQHRDRSAETVHVNTLAAQDETRASGD 130

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              ++            +   +   +    K+++  +RR
Sbjct: 131 GDRSQKGKKRRKTEGEMQSGENEREAQAGEKESKATRRR 169



 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 13/180 (7%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
               +     +K  P +   N   +   ++Q        +     EAL    + +S+ED 
Sbjct: 11  PSNQEPRRKRQKTKPRKGTNNPADQEKGNAQEKRRRDTEKDDL-REALGDDRQGQSVEDR 69

Query: 616 QDNIVSEESTGVIRKRR-----------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           ++      S  V  + +            RR+RR    D     V  +  + Q+    S 
Sbjct: 70  EEKEARSASVSVRGREQIQAMKETAGAEGRRQRRAQHRDRSAETVHVNTLAAQDETRASG 129

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST-PEMESSNSSSDPIVKKTRWWKRRK 723
           D                   G  E    +    S        +        K     RR+
Sbjct: 130 DGDRSQKGKKRRKTEGEMQSGENEREAQAGEKESKATRRRMRDLDETKGEGKRMKVTRRE 189


>gi|24431975|ref|NP_056467.2| hypothetical protein LOC26148 [Homo sapiens]
 gi|68565212|sp|Q8N655|CJ012_HUMAN RecName: Full=Uncharacterized protein C10orf12
 gi|22137605|gb|AAH24315.1| Chromosome 10 open reading frame 12 [Homo sapiens]
 gi|55665219|emb|CAH70916.1| chromosome 10 open reading frame 12 [Homo sapiens]
          Length = 1247

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 34/163 (20%), Gaps = 1/163 (0%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                ++         +            +  +              P +           
Sbjct: 1081 PKAEVQSKRKRTEGSSPPDSKNKGPTVKASKEKHADGATKTPAAKRPAARDRSSQPPKKT 1140

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            S +   V   ++   +   P+    +        SI +             + +     +
Sbjct: 1141 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGAGESS-SRPQK 1199

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +     + P   TPE  ++        K      +R+
Sbjct: 1200 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDCSHSKRR 1242


>gi|195037174|ref|XP_001990039.1| GH19119 [Drosophila grimshawi]
 gi|193894235|gb|EDV93101.1| GH19119 [Drosophila grimshawi]
          Length = 3038

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 49/190 (25%), Gaps = 8/190 (4%)

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ---APSY 590
            +        E +  V  +     +       +EK     A V        ++      S 
Sbjct: 1072 ELEDRFNALERKMSVQKSSPAKAKKEPPDGEVEKSKEPPAKVELDKAQSDETTTKVDKSI 1131

Query: 591  DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
                    + ++       +  ++I+     E+     + R   +  +        +   
Sbjct: 1132 KSKSADANEQQSSQEDRHGDKDQEIKQIRTEEKPQTPTKDRNDTQSDKAQPAKSSPSTNA 1191

Query: 651  SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG-----FTENYDVSIPPVSTPEMESS 705
             D + ++ V   +     E     N    +            +    S P  + PE +  
Sbjct: 1192 EDSNEVEVVKRKTPPSTEELEKRFNALEKQLSTTNIESSDDAQPGSSSKPKETKPEAKVQ 1251

Query: 706  NSSSDPIVKK 715
            +  ++   + 
Sbjct: 1252 SVENEKQQEN 1261


>gi|121634498|ref|YP_974743.1| IgA1 protease [Neisseria meningitidis FAM18]
 gi|120866204|emb|CAM09944.1| IgA1 protease [Neisseria meningitidis FAM18]
 gi|316983676|gb|EFV62657.1| igA-specific serine endopeptidase [Neisseria meningitidis H44/76]
 gi|325131846|gb|EGC54546.1| IgA-specific serine endopeptidase [Neisseria meningitidis M6190]
 gi|325137896|gb|EGC60471.1| IgA-specific serine endopeptidase [Neisseria meningitidis ES14902]
 gi|325200614|gb|ADY96069.1| IgA-specific serine endopeptidase [Neisseria meningitidis H44/76]
          Length = 1568

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
               R   E   +  A      + +++     ++K     E  A+  V             
Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617
                E+ +   A+        +  QA    +  E   +   L    K+E+     +    
Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144

Query: 618  -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663
                             EE     + + +RR RR    +   DA   +     +N   D+
Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             D    P D      +        +    +       E  S
Sbjct: 1205 SDYEEIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245


>gi|255947498|ref|XP_002564516.1| Pc22g04780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591533|emb|CAP97766.1| Pc22g04780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 603

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 17/195 (8%)

Query: 531 LLNQKRATIVEY-----EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           L ++ R ++ +      E      +      EL  ++  ++   P  A   +        
Sbjct: 136 LFDRVRQSLSDLMMTADEKNH---VISNANEELDRQVVRLDTVFPYIAGEISEEARLGSL 192

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-----RRRRRRRP 640
              +Y                      +D+   +   E+      RR     R++RR +P
Sbjct: 193 THWAYSNKSTAKAATNERPRREAVAQRQDLSHVLQEAEAASRSEARRDAVLARKQRRAQP 252

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D+ D           N      D   +P+       +E        +  V +   ++ 
Sbjct: 253 DADYEDTRSSG-ARKTNNAKSRGGDHAADPNAAPKRRKVERPVPV---DTSVPMERSASG 308

Query: 701 EMESSNSSSDPIVKK 715
                 ++ DP  KK
Sbjct: 309 ATSQRAANKDPAEKK 323


>gi|194747085|ref|XP_001955983.1| GF24975 [Drosophila ananassae]
 gi|190623265|gb|EDV38789.1| GF24975 [Drosophila ananassae]
          Length = 1051

 Score = 40.3 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 32/150 (21%), Gaps = 3/150 (2%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
              +  S  + P        + +D       + E            E      + R R+R
Sbjct: 468 EREQKRSVGKEPERSSRRRSIEKDGDRKKSVEKERDRKGSVEKERRERKKSPERERDRKR 527

Query: 637 ---RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
              + R      +       S  +                +     E             
Sbjct: 528 SVEKERGRKRSPEKERDRKRSPEKERDRKRSAEKERDRKRSAEKEREKPKVRPASKERHR 587

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +     +   SS+D    K R   + +
Sbjct: 588 SKEIKRRRSKDRQSSNDRRRSKDRQLSKER 617


>gi|283458334|ref|YP_003362956.1| transcription termination factor [Rothia mucilaginosa DY-18]
 gi|283134371|dbj|BAI65136.1| transcription termination factor [Rothia mucilaginosa DY-18]
          Length = 715

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 31/138 (22%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                 +                         S E   +   + ++      + RR RR 
Sbjct: 45  KAELVQALEEHQRGGAVAAPAAPKSEAPKSEASAEAATEFAQTPDAEKAEESKPRRTRRT 104

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
           R   D       ++ +       +  +   +    T  +  E  A         +    +
Sbjct: 105 RAQKDAEAKAEKTENTEAAEAPAEGVEKAEKSEKRTRSSRYETPAQKRARARRAAEGEDA 164

Query: 699 TPEMESSNSSSDPIVKKT 716
           + EM           +K 
Sbjct: 165 SAEMNEKAEKRTRRTRKD 182


>gi|171743267|ref|ZP_02919074.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC
           27678]
 gi|283455758|ref|YP_003360322.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1]
 gi|171278881|gb|EDT46542.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC
           27678]
 gi|283102392|gb|ADB09498.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1]
          Length = 704

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 3/134 (2%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  E+G   +   +  H    + +        E   +        ++ + E+  +N   +
Sbjct: 491 FKSERGDRNER--SERHSDTYEERFKPARNRAERRAEKFRGRDNREAIAREERWENPEVQ 548

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           E+     +R+R  +RR      H+    ++    Q                   +  +  
Sbjct: 549 ETRRDEHERKRNDKRREKYARLHEQQ-RTEADEPQEFGRRGSSGKKAKQSRKQFDKRQGA 607

Query: 683 AHGFTENYDVSIPP 696
                   D     
Sbjct: 608 PSKKQRKADAREQR 621


>gi|325911025|gb|ADZ45241.1| pneumococcal surface protein C [Streptococcus pneumoniae]
          Length = 482

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 48/188 (25%), Gaps = 4/188 (2%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           +K+A   + E R     N    +EL    F + K    +  +         ++       
Sbjct: 146 EKKAEDQKEEDRRNYPTNTYKTLELEIAEFDV-KVKEAELELLKEKAKKPLNEGTIKQAK 204

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
            +   +      +   ++     +     ++    + + +   + +PA            
Sbjct: 205 EKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPAPQPEKPAPKP 264

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                            ++       E      +E     +     P+ E     + P  
Sbjct: 265 EKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPST 321

Query: 714 KKTRWWKR 721
            KT W + 
Sbjct: 322 PKTGWKQE 329


>gi|195349449|ref|XP_002041257.1| GM10241 [Drosophila sechellia]
 gi|194122952|gb|EDW44995.1| GM10241 [Drosophila sechellia]
          Length = 1308

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/155 (9%), Positives = 41/155 (26%), Gaps = 2/155 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K     +         S  +    +   +  ++  A     +  S ++ +    S+    
Sbjct: 264 KKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEERKSSGDEEEAANSSDSEVM 323

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             RKRRR++      +   +          + +   S        D              
Sbjct: 324 PQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDADGDDDKQKNKRKHIRKI 383

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +  D+ +   +    +  +     I  + + + R
Sbjct: 384 IKTKDLDL--TTKEAAKEEDDRRKRIEDRQKLYNR 416


>gi|198472838|ref|XP_001356088.2| GA21255 [Drosophila pseudoobscura pseudoobscura]
 gi|198139183|gb|EAL33147.2| GA21255 [Drosophila pseudoobscura pseudoobscura]
          Length = 3127

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 40/161 (24%), Gaps = 6/161 (3%)

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
              +      I + +P     +   K                  + +      K  + E +
Sbjct: 1162 ESMPPP---IREATPAATSFSHPKKSPITKPLKKNLLTQMRQEESDEEAIPRKRTNSETV 1218

Query: 616  QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPSD 672
               +    +         R+R+RR + D  D+   S   +       +  + +  +E   
Sbjct: 1219 APTVPPVPAPPPPAVLEERQRKRRSSEDAKDSKESSGSEAPPAVSEKLKRNNEQDIEEEA 1278

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                   E       +    S+P       E      DP  
Sbjct: 1279 DQTARAKEKHLPNKQKLPSPSLPVKEKIVSEPPIKQRDPSP 1319


>gi|167462182|ref|ZP_02327271.1| phage NTP-binding protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 610

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/97 (10%), Positives = 28/97 (28%)

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            E +        +R R R+      +  +  +V + +  +D          D+      +
Sbjct: 507 EEVNADKPEVNPKRERSRKNKETEQEKDIDPEVEAEKEKLDALEAEKSGEQDVEEQPKRK 566

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +    E    +      P  +  +       +++R
Sbjct: 567 RRSKKVEEKPAETENDEVPPWKDELSEEKPKRTRRSR 603



 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 9/107 (8%)

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           + + +++     ++ R R+ +        D  V ++   +  +  +              
Sbjct: 507 EEVNADKPEVNPKRERSRKNKETEQEKDIDPEVEAEKEKLDALEAEKSGEQDVEEQPKRK 566

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +       E  +  +PP      E          K  R  + RK
Sbjct: 567 RRSKKVEEKPAETENDEVPPWKDELSEE---------KPKRTRRSRK 604


>gi|322699785|gb|EFY91544.1| hypothetical protein MAC_02429 [Metarhizium acridum CQMa 102]
          Length = 793

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 50/213 (23%), Gaps = 5/213 (2%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R       Q      +      V           I ++EA+   +          D    
Sbjct: 394 REALLAAAQRNVKAQLHGMDEKVYQETGRANPTLITDWEAKAQKAAQAQHEARTDDSEGK 453

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I+ G  +       + + S    P  D        D+A     + E L+  +     +  
Sbjct: 454 IDLGGGMFMTQEQVNAIASKKIQPVLDD-----INDKAETERERQEVLKMEEQARREQAE 508

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               R R  +   ++             +           +     ++       E    
Sbjct: 509 KEKARDREVKEIAKKDKEQEKQEEKAKKLQEKMEEKARKDEEKATKAEQKRQAKEEKRRS 568

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                   +  P      + ++ +     ++TR
Sbjct: 569 KHGLAAATTSSPHQGEHTQEADENQAGREEETR 601


>gi|332218789|ref|XP_003258541.1| PREDICTED: biorientation of chromosomes in cell division protein 1
            [Nomascus leucogenys]
          Length = 3048

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 23/252 (9%)

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            +G+  ++ S + S  +       +  A  I   +       +  ++R           +S
Sbjct: 2717 SGFRTNEESRSESYNKGEISSGRKDNAEAISGDSVEADPKEVEEEERHMPKRKRKHHSLS 2776

Query: 550  INVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIEC 596
                           IE                     +    K  S++ + +     E 
Sbjct: 2777 SEDEPDDNPDVLDSRIETAQRQCSEMEPHDTKEENSGDLEELSKTSSETNSTASRVMEEK 2836

Query: 597  VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHD 646
                 +     K E  +D       E+   +I+++R R R          +    TD   
Sbjct: 2837 DEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVDTTLKMKDDSKTDTGI 2896

Query: 647  AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
              V    SS +  +  + +   E +++    +  +                    +  S+
Sbjct: 2897 VTVEQSPSSSKLKVMQTDESNKETANLQERTISNDDGEEKIVASVRRRGRKPKRSLTVSD 2956

Query: 707  SSSDPIVKKTRW 718
             +     ++ R 
Sbjct: 2957 DAESSEPERKRQ 2968


>gi|291408143|ref|XP_002720317.1| PREDICTED: THO complex 2 [Oryctolagus cuniculus]
          Length = 1593

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 41/147 (27%), Gaps = 12/147 (8%)

Query: 572  QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            +          S S + +   ++  + +    L I  +            ++      + 
Sbjct: 1406 EQKRRKIDTHPSPSHSSAVKDSLIELKESSTKLYINHTPPPLSKSKEREMDKKDLDKSRE 1465

Query: 632  RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            R R R ++   D  +              D S      P DI      ENG  G ++   
Sbjct: 1466 RSREREKKDEKDRKE-----------RKRDHSNSDREVPPDIAKRRKEENGTMGVSKRKS 1514

Query: 692  VSIPPVSTP-EMESSNSSSDPIVKKTR 717
             S      P E +   + S    K+  
Sbjct: 1515 ESPCDSPYPNEKDKEKNKSKSSGKEKG 1541


>gi|212538475|ref|XP_002149393.1| transcriptional elongation factor Iws1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210069135|gb|EEA23226.1| transcriptional elongation factor Iws1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 413

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 33/131 (25%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            +    +    +A   D N + V  ++       +E+L+ I  +            +R R
Sbjct: 40  SDDESVLSEVDEAQFEDFNPDDVDIEDRPALDVDAENLKLIGRHKRKRRDDEDGEPKRTR 99

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
             RR           V                   P D    +  E          D ++
Sbjct: 100 EGRREKKKRAQKDSDVESGDGKAVRRKAKPRREATPEDDETLSPEERRRRALDRAMDAAL 159

Query: 695 PPVSTPEMESS 705
              +    ++ 
Sbjct: 160 KQKTRRRRKAD 170


>gi|195169095|ref|XP_002025363.1| GL12280 [Drosophila persimilis]
 gi|194108831|gb|EDW30874.1| GL12280 [Drosophila persimilis]
          Length = 1832

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 35/166 (21%), Gaps = 17/166 (10%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK             +  +              +D       + +S E  ++    ++  
Sbjct: 381 EKLRERSKEHPKDMYMPKEKNRDRSKDRHRERSKDRHRERSKEKKSKETTRERSK-DDKK 439

Query: 626 GVIRKRRRRRRRRRPATDHHDAGV--------VSDVSSIQNVIDDSFDMYMEPSDITNHN 677
              R +  +   +   T+H +             +    +                    
Sbjct: 440 NAKRPKDLKESSKESHTNHAEKPRDFPKEISHRDNKEQPKEHRSKEGVHEQSAEKRREPL 499

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--------PIVKK 715
                  G  E         +  +  S + S +        P  KK
Sbjct: 500 KDNKSRPGSMEKSSAKCSKETAKDDSSKDRSGEKPRLDKSHPTEKK 545


>gi|148232738|ref|NP_001088314.1| PRP4 pre-mRNA processing factor 4 homolog B [Xenopus laevis]
 gi|54038078|gb|AAH84355.1| LOC495151 protein [Xenopus laevis]
          Length = 991

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 32/154 (20%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +            ++P+                  + +S E  +  + SE  +   
Sbjct: 216 RISNSPAKRSKSEDQLRRSPALRHQSPEKNIKTKSPQEERVKSRERRKSPVASEIKSRER 275

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K  +    R  + +              +  D            +       G      
Sbjct: 276 TKNTKSPVSRSKSKERRSKSKERKPRRSDSDRDKKPLKSPSKDASSGKENRSPGRRTAWS 335

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               S+ P         + S      K+R    R
Sbjct: 336 PKARSLSPKQRDRAVRHSRSPPIHDCKSRQSPPR 369


>gi|237808990|ref|YP_002893430.1| translation initiation factor IF-2 [Tolumonas auensis DSM 9187]
 gi|259491502|sp|C4L8X4|IF2_TOLAT RecName: Full=Translation initiation factor IF-2
 gi|237501251|gb|ACQ93844.1| translation initiation factor IF-2 [Tolumonas auensis DSM 9187]
          Length = 910

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 52/196 (26%), Gaps = 15/196 (7%)

Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
            +   ++K+A +   + + G             K   +++ +     V        + Q 
Sbjct: 35  AMVTEHEKQALLEHLKKQHGA-------DNAEPKRMTLQRKTKGTLSVPGAGGKNKEVQI 87

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
                    V +        + E+ E  +          + +  + R+     A    + 
Sbjct: 88  EVRKSKTY-VHRSVIDEAQQQKEAEEKARQEAEKTRQEELAKAEQARKDAEAKARKEAEE 146

Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
               +  + +   + + D   +  D     +         EN       +   + E    
Sbjct: 147 KARKEAEARKQSTEAAADDAAKSPDEKARKVKAEADKRADENAKREAEALRKKQEEE--- 203

Query: 708 SSDPIVKKTRWWKRRK 723
                 +KT    +RK
Sbjct: 204 ----AQRKTELEAQRK 215


>gi|156555424|ref|XP_001605706.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 2460

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 3/157 (1%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              V A++    ++ S  +  +       + +  + L  P S     +   I     +   
Sbjct: 2236 KEVPAIIVEPPRLTSRGRRSTSLLKEVILEESISQLDSPASSKRNRLPRAIEQAAVSSPA 2295

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID---DSFDMYMEPSDITNHNLLENGAHG 685
               R RR   +   +  +  V   V + +       +S D        +  + +      
Sbjct: 2296 SNTRSRRSSIQSVPEEIEEVVNQPVQTSRTTSKNTSESKDESRTRRATSVDSSVIPPTGK 2355

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                  ++   +    +   ++S  P  KK    ++R
Sbjct: 2356 RLTRSVLAKTSILEEIIPEESTSKSPQTKKQPTRRKR 2392


>gi|134116961|ref|XP_772707.1| hypothetical protein CNBK0810 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255325|gb|EAL18060.1| hypothetical protein CNBK0810 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1042

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/162 (7%), Positives = 40/162 (24%), Gaps = 5/162 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       +    +       + +    D+           +D +     +++ G
Sbjct: 390 RNKDDKKSATGEKRDEKRAVGAEKKDDKKVAAADKDDKKAAGGNRKDDKEATGAEKKAAG 449

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +K  ++    +         V  +       + +             ++  ++G    
Sbjct: 450 AEKKNDKKAGDTKAERKVEKKEVEGERKKDDKKVGEKKHDEKVAEGDKKNDKSQSGRKKH 509

Query: 687 TENY-----DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            E       D  +      + ES +    P         +R+
Sbjct: 510 DEKVGEKKHDEKVAGGDKKDDESQSGRKKPSSGDKEGGDKRR 551



 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 41/156 (26%), Gaps = 6/156 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G   +          S  +      +     +D+      K E  +   +    +++ G 
Sbjct: 329 GEKKEERNKEHENKASRGEKKEDKNSNSREKKDDKKAAGDKKEDKKATGEKKDEKKAAGA 388

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            R +  ++       D   A     V + +           +       N  ++      
Sbjct: 389 SRNKDDKKSATGEKRDEKRA-----VGAEKKDDKKVAAADKDDKKAAGGNRKDDKEATGA 443

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           E         +  +   + +    + KK    +R+K
Sbjct: 444 EKKAAGAEKKNDKKAGDTKAER-KVEKKEVEGERKK 478


>gi|332844791|ref|XP_003314921.1| PREDICTED: synemin [Pan troglodytes]
          Length = 1555

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/166 (6%), Positives = 41/166 (24%), Gaps = 5/166 (3%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E  +G +++    +      + + + +  Q           D++          + +D  
Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPIY-----IGEDST 466

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           +      +  + +         +        ++   +   +       +  +  +  + D
Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVVLGKKTEVKATREQERNRPETIRTKPEEKMFD 526

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
           S +   E  ++    L +                 S  E       
Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKDSPKEKSVRERE 572


>gi|120865004|emb|CAL51191.1| immunoglobulin G binding protein A [Staphylococcus aureus]
 gi|120865007|emb|CAL51192.1| immunoglobulin G binding protein A [Staphylococcus aureus]
          Length = 498

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/166 (7%), Positives = 41/166 (24%), Gaps = 6/166 (3%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     ++ +             +N       +       ++     +++ 
Sbjct: 267 EQRNGFIQSLKDDPSVSKE------ILAEAKKLNDAQAPKEEDNKKPGKEDGNKPGKEDG 320

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P  +  +    +D     +  G    +   ++  +   +       +      N    
Sbjct: 321 NKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDNKKPSKEDGNKPGKEDGNKPGKEDNKKPS 380

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             D      +  N    E+G     E+ +           +   + 
Sbjct: 381 KEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNK 426


>gi|114664951|ref|XP_001168849.1| PREDICTED: nuclear pore complex-interacting protein-like 3-like
           [Pan troglodytes]
          Length = 325

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 34/141 (24%), Gaps = 8/141 (5%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            +    + +   A    +  +            ++ S E  +  +   E +    ++ +R
Sbjct: 190 RSADDNLKTPPLATQEAEAEKPPKPKRPRAADVETSSPEPKRRRVGDVEPSS---RKPKR 246

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
           +R         D           + +D S                        ++ D S 
Sbjct: 247 QRAGD-----VDPSSRKPKRRRADDVDPSSSKPKRRRADDVDPSSRKPKRRRADDVDPSS 301

Query: 695 PPVSTPEMESSNSSSDPIVKK 715
                   +    SS    ++
Sbjct: 302 SKPKRRRADDVEPSSRKPKRR 322


>gi|326929120|ref|XP_003210718.1| PREDICTED: hypothetical protein LOC100539261 [Meleagris gallopavo]
          Length = 1760

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 51/187 (27%), Gaps = 19/187 (10%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                  A      EK       V+           P+ ++  +     E  L   K  S 
Sbjct: 1035 KTDSVKASSSQKDEKALGTPRKVHPKVAKDHPEARPAKEEKAKKDHPKE--LKSEKPSSK 1092

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            ED     V +  +   +  +R+R+    A   H+A  V            S     EP  
Sbjct: 1093 EDKSKKAVEKSKSSDAKTEKRKRKADEKADKEHEATSVKASKPETAESKTSPKGKTEPDG 1152

Query: 673  ITNHNLLENGAHG-------------FTENYDVS---IPPVSTP-EMESSNSSSDPIVKK 715
                   E    G              T    VS   +PPV  P E    +SS     K 
Sbjct: 1153 EKGERTPEKDKSGFLITPAKKIKLNRETGKKIVSGENVPPVKEPVEKVEPSSSKVKQEKV 1212

Query: 716  TRWWKRR 722
                +R+
Sbjct: 1213 KGKVRRK 1219


>gi|194871973|ref|XP_001972941.1| GG13614 [Drosophila erecta]
 gi|190654724|gb|EDV51967.1| GG13614 [Drosophila erecta]
          Length = 574

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 36/149 (24%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            IE    V+ +           +    D+  E    DE   P   +ES        +   
Sbjct: 318 AIETIKQVEEVPPAPVVDSEPEEGEVRDEPEEPAKVDEPAHPEEPTESEAAAIPKELESS 377

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                 K     +         +A  V+  +  +  I        +     +   +    
Sbjct: 378 KPEESDKSDTVDKSSDKEQPSEEAPSVNPPAEPKKPIASEPTAIDDEDQNDDVISIGGDL 437

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPI 712
               E       P+ + + E      DP 
Sbjct: 438 EMMDEMTKDDDSPIVSIKSEKKEKMQDPE 466


>gi|256084729|ref|XP_002578579.1| transient receptor potential channel 2 isoform 3 [Schistosoma
           mansoni]
 gi|238663957|emb|CAZ34817.1| transient receptor potential channel 2 isoform 3 , putative
           [Schistosoma mansoni]
          Length = 636

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 36/129 (27%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                          +      D   +   +DE        E L D  +     +     
Sbjct: 416 KKSDDSDWRPASSDEEDDNDDEDDGFQETDEDEDNGGEGSDEDLSDEPNRRRKRKIKADR 475

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +  ++RRR       + +  V ++    +N  D+   +     +  +    +       E
Sbjct: 476 KNLQKRRRSTTSDGSNAEKNVTTNDPEDENTDDEIQRVMTSSRNQLSVADEDEDEEAIKE 535

Query: 689 NYDVSIPPV 697
           +   S+P +
Sbjct: 536 SLMNSLPDI 544


>gi|242018035|ref|XP_002429488.1| tpr repeat nuclear phosphoprotein, putative [Pediculus humanus
            corporis]
 gi|212514426|gb|EEB16750.1| tpr repeat nuclear phosphoprotein, putative [Pediculus humanus
            corporis]
          Length = 1217

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 39/151 (25%), Gaps = 12/151 (7%)

Query: 559  ADKLFYIEKGSPVQALVNT-GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
              +   I++    +   N        +   P      +  +  ++     ++E  +    
Sbjct: 875  EAEQMLIKRQEYKEKTKNAILFTELPNEMKPKSRGKGKKDYITDSDGSDAENEKPK---- 930

Query: 618  NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                       ++  +R+  R+  T           S   +                   
Sbjct: 931  ------EPKERKRSEKRKEGRKGGTKRRKEKKEGGDSDSGSDKPKRTSR-GTKEPKKRRK 983

Query: 678  LLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             +++G     +   VS   +ST E +S    
Sbjct: 984  KVDDGLSAKQKMKIVSKATISTSESDSDTGK 1014


>gi|170062683|ref|XP_001866774.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167880508|gb|EDS43891.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 2382

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 9/147 (6%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+     + V    +     +A     +     Q     P    ES    + +  S +  
Sbjct: 795 ERRPKDDSPVKKPVETSPVRKASQPSPDRRPKEQTPVKKPTESKESSPVRKQSQPSPDRR 854

Query: 626 GVIRKRRRRRRR---RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            V + + R+      R+P+    D                      +PS        E  
Sbjct: 855 PVEKTQARKPEESPVRKPSQPSPDRRQAKKPEESPVRKRS------QPSPDRAPAQKEPS 908

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSS 709
            H  + +++ S  PV  P+  S   +S
Sbjct: 909 PHRCSRSHERSPVPVEKPKTPSPTKTS 935


>gi|8163632|gb|AAF73773.1|AF154006_1 surface protein PspC [Streptococcus pneumoniae]
          Length = 678

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 4/188 (2%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           +K+A   + E R     N    ++L      + K    +  +      GS ++       
Sbjct: 302 EKKAKDQKEEDRRNYPTNTYKTLDLEIAESDV-KVKEAELELVKEEAKGSRNEEKINQAK 360

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
            E   +      + K ++     +     ++    + + +   + +PA D        + 
Sbjct: 361 AEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPDPQPEKPTEEP 420

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            +               ++ T+    E      +E     +     P+ E     + P  
Sbjct: 421 ENPAPAPKPEKPAEQPKAEKTDDQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPST 477

Query: 714 KKTRWWKR 721
            KT W + 
Sbjct: 478 PKTGWKQE 485



 Score = 37.3 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 49/199 (24%), Gaps = 1/199 (0%)

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +     +              +K+A   + E R     N    +EL      +E   
Sbjct: 125 EQFKKDTLKLGEKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVEVKK 184

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
               L+    K  ++         +E    +   L   K++  +  ++      +     
Sbjct: 185 AELELLKEEAKTRNEDTINQAKAKVESKKAEATKLEEIKTDRKKAEEEAKRKAGAEEDKV 244

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           K + +RR +R            +  +  +      +    PS + +            E 
Sbjct: 245 KDKLKRRAKRAVPGEPATPDKKENDAKSSDSSVGEETLPSPS-LKSGKRSGAEKRCRAEK 303

Query: 690 YDVSIPPVSTPEMESSNSS 708
                         ++   
Sbjct: 304 KAKDQKEEDRRNYPTNTYK 322


>gi|327266404|ref|XP_003217996.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA
           helicase DHX16-like [Anolis carolinensis]
          Length = 1058

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 41/176 (23%), Gaps = 21/176 (11%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I + +P +       +     Q  +    +     +E       +   +        E 
Sbjct: 68  RIPRQAPRERPARAAEQEALALQQKNRSYTLLEDSDEEEPGEAKAARGSKRQHPPRGPEG 127

Query: 624 STGVIRK-------------------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
                 K                   R  R R++  +T   +        S +  + D  
Sbjct: 128 KQRKRHKHLRQRQKEEDDDKDSDEDTREDRERKQAASTMKEEEEEDEWDRSERERLQDLE 187

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS--SDPIVKKTRW 718
           +       +   +  +        +           +M   +       + KK+RW
Sbjct: 188 ERDAFAERVKRKDKEKTRNILERSDKKAYEEAQKRLKMAEEDKKLMVPELRKKSRW 243


>gi|171685210|ref|XP_001907546.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942566|emb|CAP68218.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1100

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 47/202 (23%), Gaps = 9/202 (4%)

Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577
            +      D   Y++   R+       R  VSI +     +    + +      +     
Sbjct: 500 RLHEQDRPDPEDYIV---RSHGNYLMDR-SVSIEL---PSMLPGNYSVFISVVGERDSEA 552

Query: 578 GHKVGSDSQA--PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                   +      +            L   K+ +  +    +  +       + R + 
Sbjct: 553 LSIEEVVKRECKKRVENEKLAQVGYAYDLAHSKAAAHLEAVKKLRKKADQKKASEARVKE 612

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           RR+     H +  +        N   ++     E        L    A   T+       
Sbjct: 613 RRKNWEKRHLNREITKKQGRKNNKKLEAKQAAREAKKRAEEELKPKDAGVQTDIAPKEEK 672

Query: 696 PVSTPEMESSNSSSDPIVKKTR 717
           PV     +   +      K   
Sbjct: 673 PVEARATDVPKTDESKDAKSDG 694


>gi|298713073|emb|CBJ48848.1| Chain A, Crystal Structure Of The Brct Repeat Region From The
            Mediator Of Dna Damage Checkpoint Protein 1, Mdc1
            pdb|2ADO|B Chain B, Crystal Structure Of The Brct Repeat
            Region From The Mediator Of Dna [Ectocarpus siliculosus]
          Length = 1629

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 45/186 (24%), Gaps = 16/186 (8%)

Query: 552  VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
            +     L        KG   QA  NT  +                  +D        + +
Sbjct: 995  LKDDSTLDAPEGSTSKGLKEQAANNTTPRAVGRRAGTRRAAASASHPEDLPGEEQEPAAT 1054

Query: 612  LE----------------DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
                                   + + E         RR +RRR   +       ++ ++
Sbjct: 1055 APAGRRGRGGKKSSSGVASEPAAVAAPEQQANEDSSNRRGKRRRTEEEEKAPLSGTEETA 1114

Query: 656  IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                  ++      P            A     +  +     +  E +   +S+    K+
Sbjct: 1115 RGRGKGETAASTSIPPAAKRGRRSSRAAPAPAASASLGGDEGNDEEPQEEPASAVAAGKR 1174

Query: 716  TRWWKR 721
            TR W R
Sbjct: 1175 TRGWGR 1180


>gi|158301050|ref|XP_001238385.2| AGAP011688-PA [Anopheles gambiae str. PEST]
 gi|157013454|gb|EAU75883.2| AGAP011688-PA [Anopheles gambiae str. PEST]
          Length = 2404

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/175 (9%), Positives = 42/175 (24%), Gaps = 13/175 (7%)

Query: 555 GIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVW------------QDE 601
             E+         +                    P  +K  +               ++ 
Sbjct: 582 EPEITPPEQNASVETEKPDREDPAPPPKQIVETPPRKEKRDQDTKLTDSGGSRKGSSKER 641

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                P S       +    +E      +R++ R+R               +   ++   
Sbjct: 642 PPKESPSSRDKYRASEKSTPDEDRSRGEQRKKERKRLEEEMRKRTQSKDRPMGDERHEKR 701

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
              D  +   D    +L    + G   +  V +  +++ E E      +   + +
Sbjct: 702 AVGDGAVRVKDDRKLSLDRVSSAGTERDQHVPLGTMASDEKEKLRKGKETDKRSS 756


>gi|148681432|gb|EDL13379.1| SPEN homolog, transcriptional regulator (Drosophila), isoform CRA_a
            [Mus musculus]
          Length = 3186

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%)

Query: 588  PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
             S     E V Q        + E  E +              +RR          +  + 
Sbjct: 1866 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1925

Query: 648  GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706
               ++          +     +     N   +E  A    +       P S  E E+++ 
Sbjct: 1926 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1985

Query: 707  ---SSSDPIVKKTR 717
                  DP   K+ 
Sbjct: 1986 PKRDRRDPSTDKSG 1999


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 46/168 (27%), Gaps = 13/168 (7%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             F +           T +K   D  +     + +   QDE  +P   S           S
Sbjct: 1307 NFDVPPRETEPRRAATKNKFTVDLDSDEDFSDFDEKTQDEDFVPSDASP-----PKTKTS 1361

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             +      K ++         D  D   V   SS              P    N  + + 
Sbjct: 1362 SKLNNKEPKPQKSAMSDLEGGDAKD--SVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419

Query: 682  GAHGFTENYDVSIPPVSTPEME------SSNSSSDPIVKKTRWWKRRK 723
             A   + N        + P+        +S  S  P   KT+  ++RK
Sbjct: 1420 AAKSQSSNTTTGAKKRAAPKGTRKDPALNSGVSQKPDPVKTKNRRKRK 1467


>gi|148681433|gb|EDL13380.1| SPEN homolog, transcriptional regulator (Drosophila), isoform CRA_b
            [Mus musculus]
          Length = 3163

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%)

Query: 588  PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
             S     E V Q        + E  E +              +RR          +  + 
Sbjct: 1843 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1902

Query: 648  GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706
               ++          +     +     N   +E  A    +       P S  E E+++ 
Sbjct: 1903 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1962

Query: 707  ---SSSDPIVKKTR 717
                  DP   K+ 
Sbjct: 1963 PKRDRRDPSTDKSG 1976


>gi|110005908|gb|ABG48499.1| titin b [Danio rerio]
          Length = 28835

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 67/222 (30%), Gaps = 11/222 (4%)

Query: 492  YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
             ++  +  +       +   L+           ++    L N K+A IV  E ++  ++ 
Sbjct: 6231 TLKKVTKRSKEHQEDRDLISLKKAIKIHHEEPSTEEEALLRNVKKAEIVAEEMKYSEAVT 6290

Query: 552  VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
                       + + + +          K+    +     K++    +    + + + + 
Sbjct: 6291 ----EVKLSSSYEVTEDTWSYETSTEAEKLSKCEEKKKEYKDVREKKEMTLEMGVKEDKF 6346

Query: 612  LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                +  I  ++   + +   ++  R  PA    +A  +  V      +         P 
Sbjct: 6347 KSKKETKIPKKKEPEIPQPTLKKVIRSIPAEKEQEAVKLKPVEKPDKAV-------AGPQ 6399

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              +N +  ++          +   P+S  ++E + +      
Sbjct: 6400 KDSNIDRSKDSIGVQKHERLLKDEPLSKKKIEVAATDQKAEE 6441


>gi|330922902|ref|XP_003300019.1| hypothetical protein PTT_11156 [Pyrenophora teres f. teres 0-1]
 gi|311326034|gb|EFQ91877.1| hypothetical protein PTT_11156 [Pyrenophora teres f. teres 0-1]
          Length = 424

 Score = 40.0 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 36/141 (25%), Gaps = 3/141 (2%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            A+V +  K  +       +   +   ++EA        + +  ++     E     + +
Sbjct: 281 SAIVPSVQKKTAAVAGDVSESAADEDVEEEAKPKKTNKRTAKAAKEEDDEVEEKAEPKPK 340

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
           R R+  +       +   V ++ +             E         ++      T    
Sbjct: 341 RGRKNTKGEVKVETEDAAVDELPARPKRQSKKVKEETEEGGSDEAEEVKPVKKQSTAKAS 400

Query: 692 VS---IPPVSTPEMESSNSSS 709
            +       S    E   S  
Sbjct: 401 KAKINKENQSEITTEKRRSGR 421


>gi|8163674|gb|AAF73795.1|AF154026_1 surface protein PspC [Streptococcus pneumoniae]
          Length = 752

 Score = 40.0 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 48/207 (23%), Gaps = 6/207 (2%)

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
              +                    +K+A   + E R          +EL      +E   
Sbjct: 128 EQFKKDTLKPGEKVEEAQKKVEEAEKKAKDQKEEDRRNYPTITYKTLELEIAESDVEVKK 187

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
               LV    K   + +     K      + EA          +  ++    +       
Sbjct: 188 AELELVKVKAKGSRNEEKIKKAKAEVESKKAEATKLEEIKTERKKAEEEAKRKAEAEEEV 247

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           K + ++R +R A          +  +  +      +    PS      L         E 
Sbjct: 248 KDKLKKRTKRGALGEPATPDKKENDAKSSDSSVGEETLPSPS------LKPEKKVAEAEK 301

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716
                   +  + E    +      KT
Sbjct: 302 KVAEAEKKAKDQKEEDRRNYPTNTYKT 328


>gi|195353034|ref|XP_002043015.1| GM16379 [Drosophila sechellia]
 gi|194127080|gb|EDW49123.1| GM16379 [Drosophila sechellia]
          Length = 963

 Score = 40.0 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 35/155 (22%), Gaps = 1/155 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                                   + E   +D        S   +         E +   
Sbjct: 626 DSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDSRDRKREASPNWKREDSPGR 685

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +++    R+R  + D           S    ++DS    ++ SD    +      H    
Sbjct: 686 KRKDSANRKREDSQDKKIQDSKRQGYSAGKKLEDSPSKKLKDSDRKRQD-SPAKRHDSPG 744

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 P     E         P  ++     RR+
Sbjct: 745 RRRRDSPERKRRESPDRRRKESPARRRQESSGRRR 779



 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 38/142 (26%)

Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
                     ++     + ++     +       QD+     ++   ++R    R+R  +
Sbjct: 607 SPSGDRRRQQRSRSQNRRQDSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDS 666

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
            D       +                 +  D  +  + ++   G++    +   P    +
Sbjct: 667 RDRKREASPNWKREDSPGRKRKDSANRKREDSQDKKIQDSKRQGYSAGKKLEDSPSKKLK 726

Query: 702 MESSNSSSDPIVKKTRWWKRRK 723
                    P  +     +RR+
Sbjct: 727 DSDRKRQDSPAKRHDSPGRRRR 748



 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 6/151 (3%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
               +G +           +      + +      + +S     ++   +      RKR 
Sbjct: 605 RGSPSGDRRRQQRSRSQNRRQDSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRD 664

Query: 633 RRRRRRRPAT---DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT---NHNLLENGAHGF 686
             R R+R A+      D+       S     +DS D  ++ S          LE+     
Sbjct: 665 DSRDRKREASPNWKREDSPGRKRKDSANRKREDSQDKKIQDSKRQGYSAGKKLEDSPSKK 724

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            ++ D           +S         ++ R
Sbjct: 725 LKDSDRKRQDSPAKRHDSPGRRRRDSPERKR 755


>gi|307166380|gb|EFN60517.1| Proactivator polypeptide [Camponotus floridanus]
          Length = 2140

 Score = 40.0 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 8/183 (4%)

Query: 544  ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEA 602
             RF  S++         +          Q +            +      ++  + +DE 
Sbjct: 1745 HRFSKSLSRTPSPFKKTEDIMAAAIKIKQTIKEDTKDESPKIGETNFAAGDVFPLKKDEK 1804

Query: 603  LLPIPK--SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
             L   K   E  +  Q ++ S     +   ++ +R +R  +TD  D+         +   
Sbjct: 1805 SLKTTKLIVEDKKSTQKSLESSSKKPMEVVKKTKREKRDGSTDSEDS-----DGESKRKS 1859

Query: 661  DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                         T+ +  +    G + + +         +     + S     K R   
Sbjct: 1860 RKLEKSKRSRKASTDEDKSDKSKAGSSSDSEDDKKHSDKNKKSRDRTDSTDDRSKDRKDS 1919

Query: 721  RRK 723
            R++
Sbjct: 1920 RKR 1922


>gi|261392927|emb|CAX50512.1| IgA-specific serine endopeptidase (IgA protease) [Neisseria
            meningitidis 8013]
          Length = 1552

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 502  SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
               R   E   +  A      + +++     ++K     E  A+  V             
Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617
                E+ +   A+        +  QA    +  E   +   L    K+E+     +    
Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144

Query: 618  -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663
                             EE     + + +RR RR    +   DA   +     +N   D+
Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             D    P D      +        +    +       E  S
Sbjct: 1205 SDYEEIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245


>gi|118382353|ref|XP_001024334.1| hypothetical protein TTHERM_00532110 [Tetrahymena thermophila]
 gi|89306101|gb|EAS04089.1| hypothetical protein TTHERM_00532110 [Tetrahymena thermophila SB210]
          Length = 1787

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 48/182 (26%), Gaps = 9/182 (4%)

Query: 546  FGVSINVVIGIELADKLFYI---EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
              + I +          F I   ++    Q       +     + P  +++ E V Q++ 
Sbjct: 1004 NNIKIQIKQNQGQQPAQFQIQGPQQNQSNQIQKQQMQQQILKIEIPKLNQSSEPVTQNDK 1063

Query: 603  LLPIPKS------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
                  +       +  +    I+ +E      K +++ ++R       D       +  
Sbjct: 1064 KTENESNIFKLVRPNPLNNSQPIIPQEEQVQNEKGKKKPQQRASKKKQDDDAEEQQNTPA 1123

Query: 657  QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                    D      +  +    +N     T+            + ES     D +    
Sbjct: 1124 AKTKRIKKDTSASEENKKDQVDAQNKEKKQTKRTKKQKESDKQDKQESEGDKGDDLQLNK 1183

Query: 717  RW 718
            + 
Sbjct: 1184 KQ 1185


>gi|327295118|ref|XP_003232254.1| hypothetical protein TERG_08932 [Trichophyton rubrum CBS 118892]
 gi|326465426|gb|EGD90879.1| hypothetical protein TERG_08932 [Trichophyton rubrum CBS 118892]
          Length = 224

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 3/98 (3%)

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            G  R+ ++  +RR+      D+      +S             + +D  +      G  
Sbjct: 68  EGGPRRSQKSPQRRQQRPSSRDSEGRQPKNSATESSRQQAASSGQDADEADEADEGEGRE 127

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               +         T     ++        KTRW   R
Sbjct: 128 TSQRSKKSESERDGTTRKNKTDVEKQS---KTRWRMGR 162


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 41/164 (25%), Gaps = 4/164 (2%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                K            +    +Q  + + N     +        + +  +D       
Sbjct: 405 DHQSHKDKKQGNNKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQKQQDNNPAATE 464

Query: 622 EESTGVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
            +       R  + +++ R+P  D+         ++  N    +     +P++       
Sbjct: 465 GKPVNKKNNRQNKGKQQERQPKADNEKRNDRKPANNKGNAESTTNQQNKKPNNKRKKRNN 524

Query: 680 ENGAH--GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                                 P   ++ S    ++KK   W R
Sbjct: 525 RQRTPEDKSVRRSTKYDIREELPSTSNNESGLKALIKKPLKWLR 568



 Score = 38.0 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 37/152 (24%), Gaps = 5/152 (3%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR--- 631
                     +     + +I    Q E+ L     ++    +     E  +    K+   
Sbjct: 335 RTARADRDGKAITFVNEDDIYFFQQIESFLEKEVEKAQLPAELGEGPEYKSNGKPKKAGN 394

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             + RRR+              +  +N             +  N    + G         
Sbjct: 395 SAKSRRRKDRDHQSHKDKKQGNNKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQK 454

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +  E +  N  ++   K     + R+
Sbjct: 455 QQDNNPAATEGKPVNKKNNRQNK--GKQQERQ 484


>gi|134084006|emb|CAK43077.1| unnamed protein product [Aspergillus niger]
          Length = 1199

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 2/164 (1%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                +E+ + +   +    +    SQ    +KN   + Q        K +  E+++    
Sbjct: 915  PSSALEQRANMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQE 974

Query: 621  SEESTGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
            +E         +R+R     +   +       +   +      ++          T+   
Sbjct: 975  AERERKQRVAEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKR 1034

Query: 679  LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +        N     P         S+  +    KK R  +RR
Sbjct: 1035 KKKRNEDDFINDGGDSPSRERSSEPDSDGEAAAAPKKRRRLERR 1078



 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 34/172 (19%), Gaps = 16/172 (9%)

Query: 533  NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
            N  R  + + E                 +     + +  +       K     +      
Sbjct: 924  NMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQEAERERKQRV 983

Query: 593  NIECVWQDEALLPIPKSE------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
              E     E    + +              + E      V  +      KR+++R     
Sbjct: 984  AEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKRKKKRNEDDF 1043

Query: 641  ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
              D  D+      S      D   +    P                ++    
Sbjct: 1044 INDGGDSPSRERSSEP----DSDGEAAAAPKKRRRLERRSGSKAQQSKYKSS 1091


>gi|121596721|ref|YP_990474.1| 60S ribosomal protein L19 [Burkholderia mallei SAVP1]
 gi|121224519|gb|ABM48050.1| 60S ribosomal protein L19 [Burkholderia mallei SAVP1]
          Length = 304

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/135 (6%), Positives = 29/135 (21%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+ +P         K  + S               +   P  K ++    +    ++   
Sbjct: 118 ERQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQA 177

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +++    +R+ P+             S +     +                +  +  
Sbjct: 178 PSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAK 237

Query: 686 FTENYDVSIPPVSTP 700
                      +   
Sbjct: 238 RQAPSAKRRSDIDRR 252


>gi|320545415|ref|NP_001097475.2| CG7971, isoform F [Drosophila melanogaster]
 gi|318069094|gb|ABW08438.2| CG7971, isoform F [Drosophila melanogaster]
          Length = 1655

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 37/159 (23%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                  +     +       K    S      K  +   + E      +S      ++ 
Sbjct: 734 HRPKDEQQSVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSKEG 793

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
            +S++  G+  ++R   R+R            S           S D         +   
Sbjct: 794 QLSKDRQGLKERQRSNERKRSKERQPSKEKQRSRERQRSREPLQSKDRQRSKERQRSRER 853

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
               A       + S          S  ++S      T+
Sbjct: 854 PAKEARPTRSPRERSSKSRDDRRHRSPTNASRKQKDDTK 892



 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 33/127 (25%)

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
                   +   + +      +S   +  ++ + S++      ++R R R  + A     
Sbjct: 804 ERQRSNERKRSKERQPSKEKQRSRERQRSREPLQSKDRQRSKERQRSRERPAKEARPTRS 863

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               S  S          +   +  D T  +                   V TP      
Sbjct: 864 PRERSSKSRDDRRHRSPTNASRKQKDDTKLSRNARFKSPAHSPEAPPKKSVPTPAFNPFK 923

Query: 707 SSSDPIV 713
           ++ D + 
Sbjct: 924 AAEDTVN 930


>gi|221485353|gb|EEE23634.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2303

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 40/132 (30%)

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           +K  E    +     + ++    + + +  S       R+R     RRR ++D       
Sbjct: 331 EKADELPRGERRGGSVAEASRRAEGEKDRFSGGREETSRRRESPTGRRRLSSDSLRLPET 390

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
               S  ++ +          D  +    E+ +               + +   +  S+ 
Sbjct: 391 GRDRSSDSIGERGRRSPPRGKDDRDEPRREDDSGRGDNPPVGRRERSGSAQKNEARRSAT 450

Query: 711 PIVKKTRWWKRR 722
              ++T+  + R
Sbjct: 451 REEERTKTRRNR 462


>gi|326677257|ref|XP_686655.4| PREDICTED: LOW QUALITY PROTEIN: afadin [Danio rerio]
          Length = 1816

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 48/190 (25%), Gaps = 8/190 (4%)

Query: 535  KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT--------GHKVGSDSQ 586
            KR    + E +  + I  ++  E+ +     E+ +     +               S   
Sbjct: 1501 KRDAREKLEKQQQLHIVDLLDKEIQELQAKPERTAEDNDRLRKLMLEWQFQKRLQESKQN 1560

Query: 587  APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
                ++  +       ++   ++E    +QD     +      ++R    R +   +   
Sbjct: 1561 EEDEEEEDDEDVDTTLIMQRLEAEKRARLQDEERRRKQQLEEIRKREAEERAKQEEERRW 1620

Query: 647  AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
                              + Y            E      T +      P    + +  +
Sbjct: 1621 REEERARREADEKRRQEEEYYTRLEAERRRQHEEAERKLPTPDETGLYRPPLPRDYQPPS 1680

Query: 707  SSSDPIVKKT 716
             SS P    T
Sbjct: 1681 PSSAPATNHT 1690


>gi|312078677|ref|XP_003141842.1| TK/FER protein kinase [Loa loa]
 gi|307762993|gb|EFO22227.1| TK/FER protein kinase [Loa loa]
          Length = 1024

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 7/138 (5%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G               D ++    +      +      +P     +       + E    
Sbjct: 368 GDKHGINREKMKIRSYDRKSDREMRRKYDDKRTSDEAEVPNETENKKFIMGSENIEEQRN 427

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +++  R       T+     +   + S +    DS D+     +  N    +N   G T
Sbjct: 428 EKRKGDR-------TERRKHEMEGRIRSNKEKRRDSIDLENRGKNTNNEKSDQNDRQGRT 480

Query: 688 ENYDVSIPPVSTPEMESS 705
                  P       +  
Sbjct: 481 NKSKREQPKRKHESSQER 498


>gi|241267478|ref|XP_002406426.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215496883|gb|EEC06523.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 432

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 1/103 (0%)

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
             D        S   E+ +    +   +G  R++    RR  P     +    S  S+  
Sbjct: 6   ESDAEDTQAGTSARTEERRSRSRTRTPSGSPRRKAASPRRASPVKRRSE-RTRSGASASA 64

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                S      P+  ++ + ++  A   + +        +  
Sbjct: 65  RKKARSPSRDQSPAKRSSRSPVKRSARKSSGSSPTKKAKKAAT 107



 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 25/109 (22%), Gaps = 2/109 (1%)

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
           +   + + E      +     +         +            RR    +RR       
Sbjct: 2   SSVPESDAEDTQAGTSARTEERRSRSRTRTPSGSPRRKAAS--PRRASPVKRRSERTRSG 59

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           A   +   +     D S       S +       +G+    +    + P
Sbjct: 60  ASASARKKARSPSRDQSPAKRSSRSPVKRSARKSSGSSPTKKAKKAATP 108


>gi|194909535|ref|XP_001981966.1| GG12335 [Drosophila erecta]
 gi|190656604|gb|EDV53836.1| GG12335 [Drosophila erecta]
          Length = 647

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 39/155 (25%), Gaps = 1/155 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    Q       +  +D   P   K  +            +S   +   ++        
Sbjct: 267 RRRRDQDSTPPRRRKDADQSPPRRRKADDPSPVRRGRKDSDQSPPRKRRGNDQSPVRKRR 326

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +   RRRR    +              +   +D      +     +     + +   
Sbjct: 327 DSDQSPPRRRRDDKQSPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPLRKRDKSPRR 386

Query: 687 TENYDVSIPPVSTPEMESSNSSSD-PIVKKTRWWK 720
             + D S P       +S    +     +K+RW K
Sbjct: 387 RRDSDQSPPRNHRSREQSPPPRNRFKEERKSRWAK 421


>gi|67923326|ref|ZP_00516809.1| Ycf66, N-terminal [Crocosphaera watsonii WH 8501]
 gi|67854849|gb|EAM50125.1| Ycf66, N-terminal [Crocosphaera watsonii WH 8501]
          Length = 290

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 41/160 (25%), Gaps = 3/160 (1%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
           +       + +   + +   +   T  +      + S D   +         P   +   
Sbjct: 128 ISRNNPRLEGYADPRSNRSYSQEETRTRKPRRRPSSSNDPYGDRPSPRRKPSPTRPTNDN 187

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD---SFDMYME 669
            D  D+          ++R  R R    + +              N       S +    
Sbjct: 188 YDAWDSRDDMWEDRPKKRRPSRPRPENSSPETSSGSPRKRRPRPSNPERRYSSSVEESPT 247

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
           P+D  ++  ++            S P         S+SS+
Sbjct: 248 PTDYVDYQPIDTPESPRKRGSRPSKPENDYDSDRPSDSSN 287


>gi|195166102|ref|XP_002023874.1| GL27309 [Drosophila persimilis]
 gi|194106034|gb|EDW28077.1| GL27309 [Drosophila persimilis]
          Length = 2185

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 9/209 (4%)

Query: 511  LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA--DKLFYIEKG 568
              Q     ++  T  ++    L + R      EAR  + I     +++    + + ++  
Sbjct: 1528 AKQVEPKQLVAMTPEELASQELAKWREE----EARHQLEIIEKSELDMLSCTQNYVVKTH 1583

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               + +         + ++    K        E+       E     + +  S+E     
Sbjct: 1584 KGEEVIATKVDVTLPNVESILDKKLTSQNSDPESASKDISLEHSSSKEKSGSSKEKRHKS 1643

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY---MEPSDITNHNLLENGAHG 685
             KR   R+R R  +      +        N ++   +      E     + +   +    
Sbjct: 1644 HKRHHPRKRSRSRSSSQTRSLEKRHRRHHNDVETGGERKHRHREKQHSKDRDERISSPSK 1703

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVK 714
              E  D S  P +  E +   +S+  + K
Sbjct: 1704 KREENDRSFLPKNVTEKKPDEASASALAK 1732


>gi|121719657|ref|XP_001276527.1| rRNA maturation protein (Nop14), putative [Aspergillus clavatus
           NRRL 1]
 gi|119404739|gb|EAW15101.1| rRNA maturation protein (Nop14), putative [Aspergillus clavatus
           NRRL 1]
          Length = 913

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 49/187 (26%), Gaps = 7/187 (3%)

Query: 516 AHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIEKG 568
           +      +   V   +  +KR    + E E +  V   V          +  +    E+ 
Sbjct: 77  SKTTAARSRPGVTKSMGEEKRRQTLLREMERKNKVGGIVDRRFGEDDPTMTPEERAAERF 136

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +           + +  +    D  +  + Q  +       +  +D    +  E+ +   
Sbjct: 137 ARESQKKLRKESMFNLEEDEEDDFKLTHMGQSLSFGDGAIQDDFQDDVGGLEEEDQSDSE 196

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
             R+R+R                +    Q     S +  M+     +            E
Sbjct: 197 SPRKRKRDMDEDEELEDYTYDDDEEGEDQPERKKSKNEVMKEVIAKSKFYKLERQKAKEE 256

Query: 689 NYDVSIP 695
           + D+   
Sbjct: 257 DDDLREE 263


>gi|329116619|ref|ZP_08245336.1| hypothetical protein SPB_1013 [Streptococcus parauberis NCFD 2020]
 gi|326907024|gb|EGE53938.1| hypothetical protein SPB_1013 [Streptococcus parauberis NCFD 2020]
          Length = 262

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 33/160 (20%)

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616
                 F +E  +P +                S                   S     ++
Sbjct: 102 NFGCAYFVLENPAPQEIKFEEERAPRRKRSNRSNKSRTNSNDTKGTDSRTNDSRKPNAVK 161

Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
                 +S     ++   RR     T+          S  Q   + + +   E       
Sbjct: 162 AESKKSDSRKSDSRKPNSRRSNSRKTESKVDETRKPESPKQKSANKANNPKNENRAKDKQ 221

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                         +      + P+  +  +    I KK 
Sbjct: 222 VFSRKKRQEKNPGRNRLSERSNIPKESNDKTGHFIIRKKD 261


>gi|224130906|ref|XP_002328405.1| predicted protein [Populus trichocarpa]
 gi|222838120|gb|EEE76485.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/172 (8%), Positives = 42/172 (24%), Gaps = 8/172 (4%)

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           +    +L  +   I        +        S  + P   +      +  +     KS+ 
Sbjct: 33  IEASTKLQSE---INNNGDGNHVDALTKGQSSRRRTPKSLRAKSKTIEKPSANNSLKSKK 89

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            +    +            + +  R R    + ++        S +  I+   ++     
Sbjct: 90  AKSSPKSQGRNRKKNKDIIQGKGERNRNEHGEANNLNSSEKNVSKKERIEKGQEIRKNQE 149

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                N  +       ++  +        +     +      K+   W  +K
Sbjct: 150 RFVGSNKGQKNQKSGEKHGVLVDKSSRNKK-----NKGKLDEKEKNGWDEKK 196


>gi|328789068|ref|XP_392573.4| PREDICTED: transcription elongation regulator 1 isoform 1 [Apis
           mellifera]
          Length = 1201

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 30/99 (30%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            ++K S       +      + +      + +   + E     P  +  +       S+ 
Sbjct: 892 RVDKDSSKDKKRRSEVPSEENGKEKKDAVSEKESGEIEDNDEKPSKKENDKENAEDQSDS 951

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                +++R R RR   +    +  V   +++     D 
Sbjct: 952 EEDREKQKRERERRAEASLREREREVQRTLATHLRDRDK 990


>gi|24650807|ref|NP_733246.1| Moca-cyp, isoform A [Drosophila melanogaster]
 gi|7301671|gb|AAF56786.1| Moca-cyp, isoform A [Drosophila melanogaster]
          Length = 970

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 2/153 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P Q    +  +   DS +     + E  W+D        S   +         + +   +
Sbjct: 635 PSQRRQLSPGRKRQDSPSKKRPNSTERKWRDSPERKRDDSHDRKREASPNWKRDDSPARK 694

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFT 687
           ++    R+R  + D           S     +DS     + SD    +  +    + G  
Sbjct: 695 RKDSANRKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKDSDKKRQDSPVKRQESPGRK 754

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                      +P+    +S +    + +   +
Sbjct: 755 RQDSPERKRRDSPDRRRKDSPARRRQESSGRRR 787


>gi|46138495|ref|XP_390938.1| hypothetical protein FG10762.1 [Gibberella zeae PH-1]
          Length = 622

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 42/157 (26%), Gaps = 7/157 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS-------ESLEDIQDN 618
           E+            +     +    DK  E    D++     K        E  +  Q+ 
Sbjct: 172 EQQPAETEKQPKRKRGRPAQEKDQNDKEPEQEVADDSEKQRRKKNTKGNQVEQPDGQQEE 231

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
            +  E  G     R++R+R+ P  +        +    Q+          +  DI N   
Sbjct: 232 ELEPEPEGAQPAPRKKRQRKAPEPEPEPEDQEPEEEEQQSRRSPRNSSSNDREDINNKGR 291

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               +   ++       P    +         P  K+
Sbjct: 292 KAGKSKKTSQENTEDQQPDDATKKRERRKGGKPQAKE 328


>gi|317145949|ref|XP_001821189.2| telomere length regulator protein (Rif1) [Aspergillus oryzae RIB40]
          Length = 1722

 Score = 40.0 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 44/179 (24%), Gaps = 28/179 (15%)

Query: 572  QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
               + T      +        + +   + EA LP          +     EE       +
Sbjct: 1384 SDDMETQIASQLEQDLEFAVDSDKPDQEQEAGLPFEPPSEPPMTRKRKRDEEIASTPSSK 1443

Query: 632  RRRRRRRRPATDHHDAGVVSD-----------------------VSSIQNVIDDSFDMYM 668
             RRR  R  A +  +A +                           +  +  +        
Sbjct: 1444 ERRRSTRHSAKEIDNADLEEPRSTRSKKSTSSSNAQQVASSPAGSAPKKQKLHAKGAADD 1503

Query: 669  EPSDITNHNLLENGAHGFTENYDVSIPPVST-----PEMESSNSSSDPIVKKTRWWKRR 722
             P+ + +  L   G    +E  D      S      P       ++     +   W++R
Sbjct: 1504 APASLPDLQLGNPGTTKVSEATDSQKRRSSRLSGHSPLAVPREDATPRKSPRKGRWRKR 1562


>gi|195382292|ref|XP_002049864.1| GJ21824 [Drosophila virilis]
 gi|194144661|gb|EDW61057.1| GJ21824 [Drosophila virilis]
          Length = 2677

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 49/197 (24%), Gaps = 29/197 (14%)

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-- 613
             E       + +        N   +    +      +N   + +++       +E+ E  
Sbjct: 1235 PEQESADHDVHREQTQSETANEEPQQEEKTADEDQPQNEMEIAKEQQQTENEAAENNEQQ 1294

Query: 614  ---DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA----------------------- 647
               +        E       ++    + +   D+ ++                       
Sbjct: 1295 HNMENSHENPKPEKDASDDGQQHSEEQPKGDNDNDNSCQTETTGVTGNVDDAGDDEESCT 1354

Query: 648  GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
              VS    ++N   D+                E+ A     N     PP       S+  
Sbjct: 1355 DSVSSNRKLKNREMDASQPDAAAKRKKTLQAKESHASKGASNITAMAPPAPPKRELSTGK 1414

Query: 708  SSDPIVKKTR-WWKRRK 723
            +  P+    +   KRRK
Sbjct: 1415 AGKPLQTDVQPTQKRRK 1431


>gi|24414611|gb|AAN39118.1| peptidylprolyl cis-trans isomerase [Drosophila melanogaster]
          Length = 968

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 2/153 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P Q    +  +   DS +     + E  W+D        S   +         + +   +
Sbjct: 633 PSQRRQLSPGRKRQDSPSKKRPNSTERKWRDSPERKRDDSHDRKREASPNWKRDDSPARK 692

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFT 687
           ++    R+R  + D           S     +DS     + SD    +  +    + G  
Sbjct: 693 RKDSANRKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKDSDKKRQDSPVKRQESPGRK 752

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                      +P+    +S +    + +   +
Sbjct: 753 RQDSPERKRRDSPDRRRKDSPARRRQESSGRRR 785


>gi|332845493|ref|XP_003315056.1| PREDICTED: putative NPIP-like protein LOC613037-like [Pan
           troglodytes]
          Length = 308

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 33/168 (19%), Gaps = 11/168 (6%)

Query: 554 IGIELADK-LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
               L            P              +        +     +    P PK    
Sbjct: 143 ADDNLKTPPECLTTPLPPSPPPSAPPPSPPPSADDNLKTPPLATQEAEAEKPPKPKRPRA 202

Query: 613 EDIQDNIVSEESTG-----VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
            D++ +    +           ++ +R+R         D           + +D S    
Sbjct: 203 ADVETSSPEPKRRRVGDVEPSSRKPKRQRAGD-----VDPSSRKPKRRRADDVDPSSSKP 257

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                               ++ D S         +    SS    ++
Sbjct: 258 KRRRADDVEPSSRKPKRRRADDVDPSSSKPKRRRADDVEPSSRKPKRR 305


>gi|18698322|emb|CAC83858.1| synemin [Homo sapiens]
          Length = 1251

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 45/183 (24%), Gaps = 10/183 (5%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKN 593
           E  +G +++    +      + + + +  Q           D++              ++
Sbjct: 410 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYIGEDSTIARES 469

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                   A      + S E         E      + R R    R   +          
Sbjct: 470 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFDSKEKA 529

Query: 654 SSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
           S  +N+  ++   +  E     +H + E      +              +E S      +
Sbjct: 530 SEERNLRWEELTKLDKEARQRESHQMKEKAKENDSLKEKSVREREVPISLEVSQDRRAEV 589

Query: 713 VKK 715
             K
Sbjct: 590 SPK 592


>gi|326912313|ref|XP_003202498.1| PREDICTED: caprin-2-like [Meleagris gallopavo]
          Length = 1160

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 60/218 (27%), Gaps = 11/218 (5%)

Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567
           E    +            D+      QK+ T+  +E+R               +    E+
Sbjct: 357 EAECARKQEPPKSWEMLVDIEEQEQKQKKETLKPWESRVRQQETKRPDSPKHWEAHVKEE 416

Query: 568 GSPVQALVN-----TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
               +   +        +   ++      +  E     +  +   + E  +  Q++    
Sbjct: 417 EQKREPTKSWETRVEEEQKKQEAPKAWVARVREEQESSKPWIAKVREEQDQKKQESPKPW 476

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +     + +R++   +P              S +  +  + +   EP       +    
Sbjct: 477 VAKIREDQEQRKQESPKPWVTKAKEEPEQKQESPKPWVTQTRE---EPEQKKQEPVKSWE 533

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
            H   E       PV   +  +++   +P  KK    +
Sbjct: 534 VHVREEPEQKKQKPV---KAWAAHVREEPEQKKQETRE 568


>gi|322706004|gb|EFY97586.1| hypothetical protein MAA_06811 [Metarhizium anisopliae ARSEF 23]
          Length = 794

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/212 (8%), Positives = 48/212 (22%), Gaps = 1/212 (0%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R       Q      +      V         + I ++EA+   +          D    
Sbjct: 395 REALLAAAQRNVKAQLHGMDEKVYQETGRANPSLITDWEAKAQKAAQAQHEARTDDSKGK 454

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I+ G  +       + + S    P  D   +    +     + + E     +     E++
Sbjct: 455 IDIGGGMFMTQEEINAIASKKIQPVLDDINDKAETERERQEVLRMEEQARREQAEK-EKA 513

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                K   ++ + +   +     +   +       ++      +               
Sbjct: 514 RDRETKEIAKKDKEQEKQEEKAKKLQEKMDEKARKDEERATKAEQKRQAKEEKRRSKHGP 573

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                        +    E+     +    +T
Sbjct: 574 AVATTSSPHQGEHTQEADENPAGREEETRGET 605


>gi|237835629|ref|XP_002367112.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
 gi|211964776|gb|EEA99971.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
 gi|221506214|gb|EEE31849.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2303

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 40/132 (30%)

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           +K  E    +     + ++    + + +  S       R+R     RRR ++D       
Sbjct: 331 EKADELPRGERRGGSVAEASRRAEGEKDRFSGGREETSRRRESPTGRRRLSSDSLRLPET 390

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
               S  ++ +          D  +    E+ +               + +   +  S+ 
Sbjct: 391 GRDRSSDSIGERGRRSPPRGKDDRDEPRREDDSGRGDNPPVGRRERSGSAQKNEARRSAT 450

Query: 711 PIVKKTRWWKRR 722
              ++T+  + R
Sbjct: 451 REEERTKTRRNR 462


>gi|170028047|ref|XP_001841908.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167868378|gb|EDS31761.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 377

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 3/95 (3%)

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           RKR+ R++  R              +  Q   +   +   +  +  N           T 
Sbjct: 215 RKRKSRKQETRNKKQETRNKKQETRNKKQETRNKKQETRNKKQETRNKKQETRNKKQETR 274

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           N           + E+ N   +   KK     +++
Sbjct: 275 NK---KQETRNKKQETRNKKQETRNKKQETRNKKQ 306


>gi|297735965|emb|CBI23939.3| unnamed protein product [Vitis vinifera]
          Length = 297

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 38/125 (30%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +  V     V   + A    +         +       E +++  +++  +E     
Sbjct: 35  HEEEHQVQQRETVVRATGARRMRRRPASGASTSSAPTATVEEIVDESDEDVAVDEYEAKH 94

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K+R R+R+ R A    D        + Q+   ++     E  +     L E       +
Sbjct: 95  SKKRERKRQEREAQRQADEAARESRLTKQDRYAETRRRKDEEREAKERQLEEEAKAQKAK 154

Query: 689 NYDVS 693
             + +
Sbjct: 155 EDEAA 159



 Score = 38.0 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 2/129 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES--TG 626
              +       +    +      +         +  P    E + D  D  V+ +     
Sbjct: 34  EHEEEHQVQQRETVVRATGARRMRRRPASGASTSSAPTATVEEIVDESDEDVAVDEYEAK 93

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +KR R+R+ R       +A   S ++      +       E          E  A   
Sbjct: 94  HSKKRERKRQEREAQRQADEAARESRLTKQDRYAETRRRKDEEREAKERQLEEEAKAQKA 153

Query: 687 TENYDVSIP 695
            E+   ++ 
Sbjct: 154 KEDEAAALE 162


>gi|115926443|ref|XP_001180249.1| PREDICTED: similar to Egfl6-prov protein [Strongylocentrotus
           purpuratus]
          Length = 1045

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 23/107 (21%), Gaps = 2/107 (1%)

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                        G   + +RR R  R  T+    G        +     S D       
Sbjct: 813 PRGDKVETKRRRRGDREETKRRPRGERVETERRPRGER-ITDEEETERRPSGDREETERR 871

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEME-SSNSSSDPIVKKTRW 718
            +                    P     E E   +   +   ++ +W
Sbjct: 872 TSGDREENERIPRGDRLESERRPRGDRGETEWKPSGEREESERRPKW 918



 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 44/182 (24%), Gaps = 28/182 (15%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPS--YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            E+ +  +           +++  +    +  E + + + L    +        +   S E
Sbjct: 849  ERITDEEETERRPSGDREETERRTSGDREENERIPRGDRLESERRPRGDRGETEWKPSGE 908

Query: 624  STGVIRKRR------------------------RRRRRRRPATDHHDAGVVSDVSSIQNV 659
                 R+ +                         R    R A+   +          +  
Sbjct: 909  REESERRPKWARKKETERRRRGDREETEWRTSVDREETERRASGEREETERRPSGDQEKT 968

Query: 660  IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
                     E       + +EN      E  +    P    + E +   +    ++T W 
Sbjct: 969  ERKPSGEREETKRRPRGDRVENEWRPRGERVETDRRPRG--DREETEWRARGDQEETEWR 1026

Query: 720  KR 721
             R
Sbjct: 1027 AR 1028


>gi|317178641|dbj|BAJ56429.1| 30S ribosomal protein S1 [Helicobacter pylori F30]
          Length = 552

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEVDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                Y + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDKKISLSTKHLVTSPTEEFAQKYKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|301767352|ref|XP_002919096.1| PREDICTED: biorientation of chromosomes in cell division protein
            1-like [Ailuropoda melanoleuca]
          Length = 3240

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 54/221 (24%), Gaps = 13/221 (5%)

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            +G   ++     S  +       +     +  H+       +  ++R        R   S
Sbjct: 2909 SGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEEEERQMPKRKRKRHYPS 2968

Query: 550  INVVIGIELADKLFYIE-------KGSPVQALVN------TGHKVGSDSQAPSYDKNIEC 596
                +          IE       +  P               K  S + + +     E 
Sbjct: 2969 SEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSKTSSKTNSTASRAMDEK 3028

Query: 597  VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
                       K+E  +D       E+   +I+++R R R+    T           + I
Sbjct: 3029 DEYSSGEAAGEKAEQNDDDNIKSQEEDQPVIIKRKRGRPRKHPLETALKTKEDCKTDTGI 3088

Query: 657  QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
              V         + +     N         + + D S    
Sbjct: 3089 VTVEQPPPGGKPKSTQTDESNKETTTQQERSVSNDDSEEKT 3129



 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +  P     +  +   S S+A           ++ +      +E+L D       +E   
Sbjct: 2893 RREPFLVNESLDNVKNSGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEE 2952

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              R+  +R+R+R   +   +     DV   +           EP D    N  +      
Sbjct: 2953 EERQMPKRKRKRHYPSSEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSK 3012

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVK 714
            T +   S    +  E +  +S      K
Sbjct: 3013 TSSKTNSTASRAMDEKDEYSSGEAAGEK 3040


>gi|189091796|ref|XP_001929731.1| hypothetical protein [Podospora anserina S mat+]
 gi|188219251|emb|CAP49231.1| unnamed protein product [Podospora anserina S mat+]
          Length = 830

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 5/171 (2%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                 + +  +I +                     S          D+ L      +S 
Sbjct: 352 ESSDHRSPEREHITRLRTAPPETPRSRAQRDILNNDSNMSEGLP---DKPLTRKTSLDSA 408

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
              + +  +  S   I+    R   +R      +    +      + +          + 
Sbjct: 409 TVSRRSAGASLSAARIKSTPTRSGNKRKTPQLGNNSDRARPRRSSSPVLSESSSSSFETP 468

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +     +    +     I  V +    S +S  D   K+ + WK+RK
Sbjct: 469 ARRPSGQHKRSTVERQREASLI--VDSIIQPSESSEDDEPTKEVKSWKKRK 517


>gi|157123183|ref|XP_001660048.1| hypothetical protein AaeL_AAEL009430 [Aedes aegypti]
 gi|108874487|gb|EAT38712.1| predicted protein [Aedes aegypti]
          Length = 5301

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 54/636 (8%), Positives = 152/636 (23%), Gaps = 46/636 (7%)

Query: 86   RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145
            ++  L+E    + + E         +     +    E        ++ + E  +     +
Sbjct: 2076 KEKELEEQRRKEKELEDQRRKEKELEEQRRKEREEAERREREEHERQLQREQELEKERQL 2135

Query: 146  VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205
                E+ +    E   K+ + +   + +    +                  +T  +   +
Sbjct: 2136 QVEREEREKAEREKWQKQEEARMAKESLKNEFESCDSFTNDHGSDRIDRVNSTDSNSPSQ 2195

Query: 206  YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265
             +    ++S+    S        +K+              G           K   + D 
Sbjct: 2196 ATSKRRHSSQDSNDSPAEDANAMKKHKHNNIGERRDSGKDG-----KREKHHKSHNRSDK 2250

Query: 266  EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325
                    +     ++S    L             D + +    ++    K    + D  
Sbjct: 2251 SSKSSSGSSTSSDKVHSHVNALCSVGK-------HDNHDEKQQFLLEERRKEISFSTDGD 2303

Query: 326  KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385
             + +  + +   +Y + H            ++       +    +   +  +        
Sbjct: 2304 SMQLSHHPKKKDRYHEKHKSKKDRDASRDKENTQNANFPMDYIDHRSTSDEDE----HAR 2359

Query: 386  SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445
                      +D + + + E+ EE  +  R    A           +++  R        
Sbjct: 2360 LQHRKERKSSKDYSRRFHGESGEEYKKYDRKLSRA-------ESSADEEGRRK------- 2405

Query: 446  SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505
              +    R +    S+      +                     + Y + ++    ++ R
Sbjct: 2406 KNQTSNIRTKTTNSSD------TDDSDEPKKHSIFDIPDDGPNISMYDKVKARSCKNMQR 2459

Query: 506  SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
              EE  ++     +               +  +  E     G++ +  I  +   K    
Sbjct: 2460 QEEEKKIKAKFSKLK----QSRAKREGKNRSKSWDEDSDTDGMNSDTTINSKYNHKDHL- 2514

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
                      +        +      K       +E    I  +    +   +  S +  
Sbjct: 2515 --NKSGTITTSEDDDHLPSTPRMRRPKEPLATDSEEESNRIRSNRDRLNDLCDDESSDGD 2572

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               ++  R  RR    +D       +          D     +  +  T +   +     
Sbjct: 2573 HASKRPPRTPRRH---SDEKKMSRKNSTRIHSETDSDGHHSVVRKTPTTPNCESKPEPSD 2629

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
               ++      + + E      S   I  +TR    
Sbjct: 2630 VQMDHITIKQEMKSEEDTQEGVSKVEIKMETRVQPP 2665


>gi|73988849|ref|XP_534056.2| PREDICTED: similar to SH2 domain binding protein 1 [Canis familiaris]
          Length = 1173

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 591  DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR------RRRPATDH 644
              +      DE       + S  D  +N     S     +R RR+         +P+   
Sbjct: 1035 RNSNSNSDSDEGERRKKHASSESDSDENQNKSGSEAGSPRRPRRQESDEDSDSDQPSRKR 1094

Query: 645  HDAGVVS-DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              +G    D  S+Q+    S    M+    +     E+ +   ++N        +  E E
Sbjct: 1095 RPSGSEQSDNESVQSGRSRSGGSDMDSRPASPSAESEHDSERGSDNEGSGQGSGNESEPE 1154

Query: 704  SSNSSSDPIVKKTR 717
             SN+ +     +  
Sbjct: 1155 GSNNEASDRGSERG 1168


>gi|116180704|ref|XP_001220201.1| hypothetical protein CHGG_00980 [Chaetomium globosum CBS 148.51]
 gi|88185277|gb|EAQ92745.1| hypothetical protein CHGG_00980 [Chaetomium globosum CBS 148.51]
          Length = 916

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/189 (7%), Positives = 54/189 (28%), Gaps = 13/189 (6%)

Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYI 565
                 + +     +   +  ++R    +VE + R  V   +          ++ +   +
Sbjct: 78  ANDKATMSIKGRPGLAKAVGEERRRQTLLVEMQRRNKVGGLIDRRFGEDDPNMSLEEKMM 137

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYD----KNIECVWQDEALLPIPKSESLEDIQDNIVS 621
           E+ +  Q   +    +    +              ++ D+      K +  E+   +   
Sbjct: 138 ERFTREQQRNHKKSSMFDLEEDDEPMGGLTHMGRPLFDDDEDQVPVKDDFDEEDLASGDE 197

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT--NHNLL 679
            +++   R+  +R+RR     +  +          +   +   ++  +            
Sbjct: 198 SDNSRAERRMLKRQRRAEAGEEQEEEDDDDQPERKKTKKEIYEEIISKSKQHRYERQAAK 257

Query: 680 ENGAHGFTE 688
           +  +    E
Sbjct: 258 DEDSELRAE 266


>gi|119480521|ref|XP_001260289.1| mRNA splicing factor RNA helicase (Cdc28), putative [Neosartorya
           fischeri NRRL 181]
 gi|119408443|gb|EAW18392.1| mRNA splicing factor RNA helicase (Cdc28), putative [Neosartorya
           fischeri NRRL 181]
          Length = 1118

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/176 (8%), Positives = 37/176 (21%), Gaps = 19/176 (10%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +   ++  +             +         +D+        +     + +       G
Sbjct: 91  RLVDMEPDLTDAASSLGPQNVEAERDKQRRREKDKDRSRGRSEKEDSRRKRDRSRSRDEG 150

Query: 627 VIRKRRRRRRRRRPATDHHDA---------------GVVSDVSSIQNVIDDSFDMYMEPS 671
              ++R ++ RRR   D  +                    D            D    P 
Sbjct: 151 SRERQRSKKLRRRAVDDFEERWGDEEIPDDDYEDGGEEGQDFDESPPKRTRLEDGSASPR 210

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW----KRRK 723
              +  L            D+         +   +      + + R       RR+
Sbjct: 211 STASDELDPETKKELERKRDLEERDELAKRLAKKDDGKSKKIVEDRTRTSEAARRR 266


>gi|328771636|gb|EGF81676.1| hypothetical protein BATDEDRAFT_87629 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 297

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 1/155 (0%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV  L +             Y  + E                   +      +   G   
Sbjct: 81  PVDDLESPFKSDLQSPAGGIYLHDEEEPSTSAPTPQRKVRHRPYVVNMASKRKPKLGKAS 140

Query: 630 KRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           KR + R  ++  ++   D       S        +  +   P D                
Sbjct: 141 KRPKNRSTKQKVSEYPEDTPTKQRTSRRPKNTPTNQKVSEYPEDTPTKQRTSKRLKNTPT 200

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           N  VS  P  TP  + ++          +  +RRK
Sbjct: 201 NQKVSEYPEDTPTKQRTSKRPKNTPTSQKVSERRK 235


>gi|322796188|gb|EFZ18764.1| hypothetical protein SINV_10047 [Solenopsis invicta]
          Length = 1200

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 41/161 (25%), Gaps = 6/161 (3%)

Query: 562 LFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
            F I ++      +     +    S +         +    +     +     D   +  
Sbjct: 282 EFDILDEIITSNHITPVALEQAKASASEDSQDYSFDIEPRFSDDESIEDTFTYDPNVSEK 341

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             E T  + ++ ++  +              D     N I  +     +  DI +++  +
Sbjct: 342 KSEQTEDVNEKEKKNLQHEEIDTKDKQTSNKD-----NKIHSNHHHDAKTGDIKSNDRSK 396

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                 +  +       +  + +     S    K+     R
Sbjct: 397 EHKTSDSRKFSEKREDAARQDTDKEKHQSRDKNKEKDSRDR 437


>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
 gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
          Length = 717

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG--NRHGFLPFLEI 74
            E   ++   G IYL KV R+E      AFV  G    + G +   E+
Sbjct: 613 IEDIVREVQVGEIYLGKVKRIEKFG---AFV--GLFSGKDGLVHISEL 655


>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
          Length = 717

 Score = 40.0 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74
            E   ++   G IY  KV RVE      AFV+    + G +   E+
Sbjct: 613 IEDIVREVQVGEIYEGKVKRVEKFG---AFVELFSGKDGLVHISEL 655


>gi|320588547|gb|EFX01015.1| KAP-like kinetoplast-associated protein [Grosmannia clavigera
           kw1407]
          Length = 893

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 58/246 (23%), Gaps = 10/246 (4%)

Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528
           R++     +  T +     +     + +   A  + R+ +E         +     +D  
Sbjct: 288 RRQQMEDAIRQTAQAEFARQLEASNKEREEQAKELERAKKEADRLAR-ERMEAEKRADEE 346

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
             +   +    +E EAR  +                 E+      +     +        
Sbjct: 347 KRIQQAESIKRIEMEARARMEAERRADE---------ERRKREAEVAARVEQEARSKIEA 397

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
                 E   ++  +    + E+   I+    ++E           R  +          
Sbjct: 398 ERRAEEERRKREAEVTARVEQEARSRIEAERRADEERRKREAEVAARVEQEARAKVEAER 457

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
           V       +     +       S +      +             +   +   +E+   +
Sbjct: 458 VAELERRKREAEMTARVEQEARSRMEAERRADEERKKREAEVAARVEQEARARVEAERRA 517

Query: 709 SDPIVK 714
            D   K
Sbjct: 518 EDERRK 523


>gi|302674427|ref|XP_003026898.1| hypothetical protein SCHCODRAFT_114015 [Schizophyllum commune H4-8]
 gi|300100583|gb|EFI91995.1| hypothetical protein SCHCODRAFT_114015 [Schizophyllum commune H4-8]
          Length = 486

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 7/126 (5%)

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
            P   ++     Q     +++ G  +++R  +R+    +D  +A V     + +     +
Sbjct: 183 APATPAQRSYPGQKAHRHDKNKGATKRKRAAKRKVAADSDDDEAEVAEPEPARKRTRSQT 242

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE----MESSNSSSDPIVKKTR-- 717
                            + A G       +   V   E         S    +V   R  
Sbjct: 243 KAAASTSKGKGRAKAGPSSARGRRGRKAATPSDVEEEEEAEERSQPESEERDVVPPVRFR 302

Query: 718 -WWKRR 722
             W RR
Sbjct: 303 VDWDRR 308


>gi|58263296|ref|XP_569058.1| Pol II transcription elongation factor [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|134108682|ref|XP_776994.1| hypothetical protein CNBB5210 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259677|gb|EAL22347.1| hypothetical protein CNBB5210 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57223708|gb|AAW41751.1| Pol II transcription elongation factor, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1186

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 40/149 (26%), Gaps = 1/149 (0%)

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                      ++    +  +       ++      ++++ ++      +EE         
Sbjct: 946  RAEEQARIQAAEEARQAELRIKAEEIAEQRRKAREEAQAWQEELAARQAEEEARRAAIVE 1005

Query: 633  RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
            +R+RR+    D  + G        +           +   + + + +             
Sbjct: 1006 KRKRRKEGIADSGEDGEGEGRKREKKPRKKKTKEGKKGRKVRSKSEVGTTDEEEEARETG 1065

Query: 693  SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  T     + S+   ++K  R  +R
Sbjct: 1066 DDEDEETSRARKAKST-LAMLKAKRKARR 1093


>gi|321265754|ref|XP_003197593.1| hypothetical protein CGB_N3080W [Cryptococcus gattii WM276]
 gi|317464073|gb|ADV25806.1| Hypothetical protein CGB_N3080W [Cryptococcus gattii WM276]
          Length = 988

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 58/245 (23%), Gaps = 10/245 (4%)

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529
             +   + E            G ++ +   AL+  R  EE   +  A         + V 
Sbjct: 734 PEVGPLMWEWWKVEL------GDMKERVEKALTAARKREEEPQKEAAKE--SKKGLESVE 785

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
            L ++ +      E     S   + G +     F IE    V+  V        + +  +
Sbjct: 786 ELESRLKKLDSRLEEDDSRSGGGMRGGKTLMIEFSIENVQVVKRRVEKIATARENGKRKA 845

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                E    DE     P     +  + +           K   R R+          GV
Sbjct: 846 DVIAAEDTDDDEPASSKPSGRFDKRAKRDGRDGRDGREGSKGDFRDRQGGKFGKDRFKGV 905

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
            +      +      +             ++            S+  V            
Sbjct: 906 QNGQRRDHSDRGGRNERGGRNDRGDRPGQVQPRQPRR--RDQKSVDQVKKDVKTKDAGEK 963

Query: 710 DPIVK 714
             I K
Sbjct: 964 RGIEK 968


>gi|309358536|emb|CAP34004.2| hypothetical protein CBG_15828 [Caenorhabditis briggsae AF16]
          Length = 1458

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 16/201 (7%)

Query: 531 LLNQKRATIVEYEARFGVSINVVI------GIELADKLFYIEKGSPVQALVNTGHKVGSD 584
           +L  KR  + ++ +    +  +V          L       E   P +       +    
Sbjct: 545 ILKTKRNALPDFSSASKRAKLLVPSIVKPSDPNLDSAASAEEAPGPSKLSEGKSERQTGQ 604

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST---GVIRKRRRRRRRRRPA 641
              P   +        E   P  +    ++ +     ++        ++R  R R+ +  
Sbjct: 605 EAVPENQEASTVPVDREISGPGDQGSEEQESEGQGPKDQEQVIPIPAKRRSGRPRKEQNQ 664

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                     D   I+ +        +E     N N + N      +  + S  P  +  
Sbjct: 665 NLEDKEPEARDADFIEPL-------DLEIPATRNANSINNSKQALAKQAEASEAPAESAP 717

Query: 702 MESSNSSSDPIVKKTRWWKRR 722
                     ++K+   W R+
Sbjct: 718 APKPAYGPHAVIKEIPEWIRK 738


>gi|221044634|dbj|BAH13994.1| unnamed protein product [Homo sapiens]
          Length = 557

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 30/135 (22%), Gaps = 5/135 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  +          AP    +      +    P+P S         + ++E+    
Sbjct: 424 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 483

Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            ++ +R+R       P       G V      +       +             +E    
Sbjct: 484 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRWRAADVEPSSPERKRRRVGDVEPS-R 542

Query: 685 GFTENYDVSIPPVST 699
                    + P S 
Sbjct: 543 KPKRRRAADVEPSSP 557


>gi|325569585|ref|ZP_08145632.1| hypothetical protein HMPREF9087_1921 [Enterococcus casseliflavus
           ATCC 12755]
 gi|325157141|gb|EGC69306.1| hypothetical protein HMPREF9087_1921 [Enterococcus casseliflavus
           ATCC 12755]
          Length = 347

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 35/142 (24%), Gaps = 7/142 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +        +T      +       +      +     P  K  + +        + ++ 
Sbjct: 20  REKKRDQSEDTPRNPRIEKFQAQGKQASPSSGKKRPKKPTQKEPTGQAPVKKKRKKAAST 79

Query: 627 VIRKR-------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             R +         +++ R  A+   +A        +Q       +   +    ++ N  
Sbjct: 80  ANRPKLPIEKQHPSKQKERAAASTTSEAPRKKKKRPLQQARPSQHNEQGKIKKSSHPNAE 139

Query: 680 ENGAHGFTENYDVSIPPVSTPE 701
             G H   +           P+
Sbjct: 140 SKGTHKQGKKPAEVSQKRRPPQ 161


>gi|323191726|gb|EFZ76978.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
          Length = 222

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 20/111 (18%)

Query: 24  RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75
           R+EE+  + E        G IY  KVTR+       AFV  GG + G +   +I      
Sbjct: 122 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 171

Query: 76  --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124
              DY Q+       +L+     +                 P   + E+  
Sbjct: 172 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE 222


>gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1]
 gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1]
          Length = 895

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 30  FESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74
            E+  KK   G +Y  KV RVE     AFV+     +GFL   ++
Sbjct: 617 IENIVKKAEVGEVYDGKVVRVEDKF--AFVELFEGTNGFLHVGDV 659


>gi|313225131|emb|CBY20924.1| unnamed protein product [Oikopleura dioica]
          Length = 2665

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 16/225 (7%)

Query: 515  TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
             A   ++        Y  + +++   E E    +S ++    ++ +           + +
Sbjct: 2196 NAQEPVMTDIETDNEYQSDGEKSDYEEDELEIEISDSLRPSFDVLNPAELAAAQKNGEKI 2255

Query: 575  VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
            V                K  +        + +      +         E    +   R R
Sbjct: 2256 VRKISSPTEMKPISLTIKPSKPSKPITHSVDLDSEAEFDPAPPGSPFREPPKPVSPPRAR 2315

Query: 635  RRRRRPATDHHD-------------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
            ++R+  + D                             I ++  +  +       +  E 
Sbjct: 2316 KKRQEESKDETKLVEGRTPSWSAAAEKKDEPRPVPPPSITENQSLMPDRRRTRKLSSPER 2375

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSS---DPIVKKTRWWKRRK 723
                  ++ DV     S        + +   D   K T+  KRRK
Sbjct: 2376 STRSSMKSKDVDSDRSSRSSTRKHRNENERIDSREKNTKASKRRK 2420


>gi|320164634|gb|EFW41533.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 506

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 40/160 (25%), Gaps = 6/160 (3%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E+ +  +  +    +  + +     + + +           P +              
Sbjct: 263 ALEQQAKKEKHIAAAARRRAKAAESDEEGSGDAAPMQVDEDAAPAAPRERREHQRPREPR 322

Query: 624 STGVIRKRRRRRRRRRPAT-DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +   R+   R R RRPA+ D  +    +          ++ +                 
Sbjct: 323 ESRGSREHSERPRPRRPASGDASEESGAAPARVSAKRRAEADEHDSTEVASRPSKPSNGK 382

Query: 683 AHGFTENYDVSIPPVST-----PEMESSNSSSDPIVKKTR 717
            H        +             + +S+  S    K TR
Sbjct: 383 GHSEHRKPPQTGAKEEEHSTKRVRISASDDGSLSTTKSTR 422


>gi|317037100|ref|XP_001398431.2| RNA polymerase II transcription elongation factor (Ctr9) [Aspergillus
            niger CBS 513.88]
          Length = 1214

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 2/164 (1%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                +E+ + +   +    +    SQ    +KN   + Q        K +  E+++    
Sbjct: 930  PSSALEQRANMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQE 989

Query: 621  SEESTGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
            +E         +R+R     +   +       +   +      ++          T+   
Sbjct: 990  AERERKQRVAEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKR 1049

Query: 679  LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +        N     P         S+  +    KK R  +RR
Sbjct: 1050 KKKRNEDDFINDGGDSPSRERSSEPDSDGEAAAAPKKRRRLERR 1093



 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 34/172 (19%), Gaps = 16/172 (9%)

Query: 533  NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
            N  R  + + E                 +     + +  +       K     +      
Sbjct: 939  NMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQEAERERKQRV 998

Query: 593  NIECVWQDEALLPIPKSE------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
              E     E    + +              + E      V  +      KR+++R     
Sbjct: 999  AEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKRKKKRNEDDF 1058

Query: 641  ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
              D  D+      S      D   +    P                ++    
Sbjct: 1059 INDGGDSPSRERSSEP----DSDGEAAAAPKKRRRLERRSGSKAQQSKYKSS 1106


>gi|156097883|ref|XP_001614974.1| RAD protein (Pv-fam-e) [Plasmodium vivax SaI-1]
 gi|148803848|gb|EDL45247.1| RAD protein (Pv-fam-e) [Plasmodium vivax]
          Length = 536

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 36/160 (22%), Gaps = 6/160 (3%)

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
           +  +   +E                        D  +E   Q EA   I     +E    
Sbjct: 347 MEGEQLKMEGEQAEADGQAEADGQAEADGQAEADGQVEADGQVEAEEQIEADGQVEADGQ 406

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                +     +    R++  + A    +      V      +  +     +P+      
Sbjct: 407 AEADGQVEAEEQVEAERKQSEKEAKAEGEKKPTVQVKKPNVQVKKTATQVKKPTAQVKKP 466

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +            +     + +         P  K+T+
Sbjct: 467 TTQVKKPTAQVKKPTAQEKKPSVK------EKKPEGKETK 500


>gi|296418241|ref|XP_002838750.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634711|emb|CAZ82941.1| unnamed protein product [Tuber melanosporum]
          Length = 1181

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/185 (8%), Positives = 46/185 (24%), Gaps = 5/185 (2%)

Query: 542  YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
             E       ++            IE  S +           +  +   Y++  +    + 
Sbjct: 895  LEEGIQSFSDIARSNNPPYPSSEIEARSTMGKNTFRKQMERAIQKQREYEEKNQAKLAEA 954

Query: 602  ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-----HHDAGVVSDVSSI 656
                        + ++    E          +R++ +  A +       +  +  + S  
Sbjct: 955  RRKREEDLRRKREAKEAEEREIEKRNKAIADQRKKMQEEAREFAERKAEEERIREENSDG 1014

Query: 657  QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +     S     +          ++G        + S     +    + +    P  K+ 
Sbjct: 1015 EKKRKRSSAAGSKSRSTRKRGSKKDGTIDSDSTSEPSRRRSKSKSAITDDDEQKPARKRK 1074

Query: 717  RWWKR 721
            +  +R
Sbjct: 1075 KLTRR 1079


>gi|261326507|emb|CBH09468.1| translation initiation factor IF-2, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 833

 Score = 40.0 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 32/129 (24%)

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           +V  +E   +    E+ +P             +  A            DE  L +P  + 
Sbjct: 107 IVPDVEKVREQQKKEREAPRPKQQKQKPTQKQEEGAADERAAKAGHESDEDSLDLPVEDD 166

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            E  +      E      +    R  RR     ++  +    + +      + +      
Sbjct: 167 GEVTEPTESDAEVDEDDWEAMMERDDRREQRKINNERIRKRRAEMVEERLKAKEARKRAK 226

Query: 672 DITNHNLLE 680
           +        
Sbjct: 227 EEERRAKEH 235


>gi|325115376|emb|CBZ50931.1| gh12570, related [Neospora caninum Liverpool]
          Length = 3009

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 35/156 (22%), Gaps = 4/156 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+    +   +   +     ++              +           +  ++  +    
Sbjct: 335 ERVERREQGGDEPDRGDPHGRSRGKSPRRRGRDDRGSERDDCGVPEPREESEDDAASGGE 394

Query: 626 GVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              R+ + +R RR       +D  + GV S   + +     S                + 
Sbjct: 395 RKRRRYQDQRGRRETRASRESDLEERGVSSRGEASRRARSSSRAKEKREERTPGSEGEDG 454

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              G  E  D           E   S       K  
Sbjct: 455 CDGGRAEFQDSVSEVKKGRRGEREKSRKARKDAKLG 490


>gi|27803008|emb|CAD60711.1| unnamed protein product [Podospora anserina]
          Length = 820

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 36/171 (21%), Gaps = 5/171 (2%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                 + +  +I +                     S                +  +   
Sbjct: 342 ESSDHRSPEREHITRLRTAPPETPRSRAQRDILNNDSNMSEGLPDKPLTRKTSLDSATVS 401

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                  +S         R   +R+     ++ D       SS       S         
Sbjct: 402 RRSAGASLSAARIKSTPTRSGNKRKTPQLGNNSDRARPRRSSSPVLSESSSSSFETPARR 461

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                          E    +   V +    S +S  D   K+ + WK+RK
Sbjct: 462 -----PSGQHKRSTVERQREASLIVDSIIQPSESSEDDEPTKEVKSWKKRK 507


>gi|224007643|ref|XP_002292781.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971643|gb|EED89977.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 813

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 8/152 (5%)

Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617
           L      IEK     A          + +        E   +D+  +   +  + E+  +
Sbjct: 492 LDKNKVTIEKVVGWDAGETGVSSSHEEPEESHEVSAHED--KDDMPVSTRRKRAFEESVE 549

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
              +EE      ++R+RR      ++       +  ++ +   ++  D     +      
Sbjct: 550 AKDAEEEAPEPPRQRQRREDVVEESETPKKKATATAAATEKRRNEEHDEVEGEAPAAV-- 607

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                     +      PPV   E + S+   
Sbjct: 608 ----PVKKSKKATTAGPPPVEQVEYDPSSDEE 635


>gi|195167765|ref|XP_002024703.1| GL22477 [Drosophila persimilis]
 gi|194108108|gb|EDW30151.1| GL22477 [Drosophila persimilis]
          Length = 653

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 42/176 (23%), Gaps = 2/176 (1%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            E R    +            +Y ++    +            ++       +E  ++DE
Sbjct: 192 LEQRPQRPLR-RPYNRRPIDDYYYDEEDQYEDEYYERPTRRHKTRPRHRKPQVEVDYEDE 250

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR-RRRRPATDHHDAGVVSDVSSIQNVI 660
                 ++E       N   +E   +      R   RR   T       VS         
Sbjct: 251 YEEKRVEAEKPARRNRNRYRDEEESLDEDYEERPAIRRGKPTPGPAGRKVSPPRKPGRAE 310

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +        P      N          ++ D    P    + E +     P   KT
Sbjct: 311 ERRSFNEDRPLARRRSNERRTTPSSAIDDLDEYEKPYGGTDQEEAAEEQTPQKVKT 366


>gi|171689876|ref|XP_001909877.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944900|emb|CAP71011.1| unnamed protein product [Podospora anserina S mat+]
          Length = 719

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 40/155 (25%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G P ++      K       P                P   SE  E+ +     ++ T  
Sbjct: 257 GRPAKSQEPARAKAAPVISKPVKQTKKSAEKASVEQEPEEGSEGGEEEEKEEEIQQPTRP 316

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             K     +R RPA+   +       +           +  E  +               
Sbjct: 317 PSKPAAPGKRGRPASKASNKAPELAPAPAAGRGRKRQAVPEEEEEEEATAEPSQEPQSKK 376

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
           +  D         + E + ++     KKT   KR+
Sbjct: 377 KRTDAGPSRKKATKNEKATAAPADKPKKTAGRKRK 411


>gi|268569578|ref|XP_002640558.1| Hypothetical protein CBG15828 [Caenorhabditis briggsae]
          Length = 1474

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 16/201 (7%)

Query: 531 LLNQKRATIVEYEARFGVSINVVI------GIELADKLFYIEKGSPVQALVNTGHKVGSD 584
           +L  KR  + ++ +    +  +V          L       E   P +       +    
Sbjct: 561 ILKTKRNALPDFSSASKRAKLLVPSIVKPSDPNLDSAASAEEAPGPSKLSEGKSERQTGQ 620

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST---GVIRKRRRRRRRRRPA 641
              P   +        E   P  +    ++ +     ++        ++R  R R+ +  
Sbjct: 621 EAVPENQEASTVPVDREISGPGDQGSEEQESEGQGPKDQEQVIPIPAKRRSGRPRKEQNQ 680

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
                     D   I+ +        +E     N N + N      +  + S  P  +  
Sbjct: 681 NLEDKEPEARDADFIEPL-------DLEIPATRNANSINNSKQALAKQAEASEAPAESAP 733

Query: 702 MESSNSSSDPIVKKTRWWKRR 722
                     ++K+   W R+
Sbjct: 734 APKPAYGPHAVIKEIPEWIRK 754


>gi|256084731|ref|XP_002578580.1| transient receptor potential channel 2 isoform 3 [Schistosoma
           mansoni]
 gi|238663958|emb|CAZ34818.1| transient receptor potential channel 2 isoform 3 , putative
           [Schistosoma mansoni]
          Length = 578

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 36/129 (27%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                          +      D   +   +DE        E L D  +     +     
Sbjct: 416 KKSDDSDWRPASSDEEDDNDDEDDGFQETDEDEDNGGEGSDEDLSDEPNRRRKRKIKADR 475

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +  ++RRR       + +  V ++    +N  D+   +     +  +    +       E
Sbjct: 476 KNLQKRRRSTTSDGSNAEKNVTTNDPEDENTDDEIQRVMTSSRNQLSVADEDEDEEAIKE 535

Query: 689 NYDVSIPPV 697
           +   S+P +
Sbjct: 536 SLMNSLPDI 544


>gi|198465721|ref|XP_002135027.1| GA23468 [Drosophila pseudoobscura pseudoobscura]
 gi|198150286|gb|EDY73654.1| GA23468 [Drosophila pseudoobscura pseudoobscura]
          Length = 1924

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/169 (8%), Positives = 36/169 (21%), Gaps = 17/169 (10%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            + K  P +        +    +            + +        E          S++
Sbjct: 377 DVSKEKPRERSKEHPKDMYMPKEKNRDRSKDRHRERSKDRHRERSKEKKSKETTRERSKD 436

Query: 624 STGVIRKRRRRRRRRRPA-TDHHDAGV--------VSDVSSIQNVIDDSFDMYMEPSDIT 674
                ++ +  +   + + T+H +             +    +                 
Sbjct: 437 DKKNAKRPKDLKESSKESHTNHAEKPRDFPKEISHRDNKEQPKEHRSKEGMHEQSAEKRR 496

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--------PIVKK 715
                     G  E   V     +  +  S + S +        P  KK
Sbjct: 497 EPLKDNKSRPGSMEKSSVKCSKETAKDDRSKDRSGEKPRLDKSHPTEKK 545


>gi|194381132|dbj|BAG64134.1| unnamed protein product [Homo sapiens]
          Length = 992

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910

Query: 720 KRRK 723
            R +
Sbjct: 911 SRER 914


>gi|194882691|ref|XP_001975444.1| GG25360, isoform A [Drosophila erecta]
 gi|190658631|gb|EDV55844.1| GG25360, isoform A [Drosophila erecta]
          Length = 4884

 Score = 40.0 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 86/307 (28%), Gaps = 13/307 (4%)

Query: 422  LIVVDFIDMEEKKNNRSVEKK----LKESLKKDRARVQVGAISNFGLLEMSRQRI---RS 474
            +I  D +D   ++ N  +E+     L E    ++   Q+     FG +++  ++I     
Sbjct: 2502 IIFDDLLDERTERINPKIEEIKKILLSEYDYIEKKDGQLHTAVVFGKIQLITEKILYICE 2561

Query: 475  SVLESTTKVCTYCKGAGYIRSQSSVA---LSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
               +           AG I+          SI R + +   Q      I    +D +  +
Sbjct: 2562 DFKQIIESQNQNKDAAGDIKKSEIEDVVDHSIERDILKEPQQLEIDTDIKSGQADSLDEV 2621

Query: 532  LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
             +++     + E       +  +  +        E  +   +          + +     
Sbjct: 2622 FDKQALEEKQLEDSAQKQADQNVEQKPQKPEVS-EVVAEKISEEKIEESKKPEVKETEEK 2680

Query: 592  KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
                     +AL      +S++   D    ++S           +      +      V 
Sbjct: 2681 SEKAKALDKQALEEKQLEDSVQKQADQDADQKSQKPEVSEVVAEKISEEKIEEPKKSEVK 2740

Query: 652  DVSSIQNVIDDSFDMYMEPSDITNHNLL--ENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
            D               +E   + +      +  A   ++  +VS         E    + 
Sbjct: 2741 DTEVKSEKAKALDKQALEEKQLEDSAQKQADQDADQKSQKPEVSEVVAEKISEEKIEETK 2800

Query: 710  DPIVKKT 716
             P VK T
Sbjct: 2801 KPEVKDT 2807


>gi|145251900|ref|XP_001397463.1| ribosomal RNA methyltransferase Nop2 [Aspergillus niger CBS 513.88]
 gi|134083004|emb|CAK42767.1| unnamed protein product [Aspergillus niger]
          Length = 762

 Score = 39.6 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 5/151 (3%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             A  +    V S +       +   +  ++ ++   +  S    +++           +
Sbjct: 596 NSAKKSKTLSVASTTTDDDEPIDKTPITDEDGMVIETEGGSFGPFEEDEEDAARIARAER 655

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            R RR+   P      A +     S       +     E  +       +       E+ 
Sbjct: 656 NRLRRKGLNP-----KAILNKPAKSKSKDESSAPTEKTEEKEKKKEESPKRETPAKKESK 710

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           +   P   +   ++   +++P   K +  K 
Sbjct: 711 ESPKPKADSKPTKTKTETAEPSTTKKQQQKP 741


>gi|297281679|ref|XP_001087893.2| PREDICTED: protein ELYS isoform 1 [Macaca mulatta]
          Length = 2336

 Score = 39.6 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 7/182 (3%)

Query: 517  HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576
             ++   T   +   + +Q+   I+       + ++ V       +          + + N
Sbjct: 1935 SSVTKRTPRRIKRSVESQESVEII-----NDLKVSNVTSPSRMIRKLRSANLDASENIGN 1989

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                  SD Q P          +      + +  +L+  Q ++ +E     I ++R R R
Sbjct: 1990 KPDDKSSDEQLPIKRIRRVRGREVSPS-DVREDSNLDSSQLSLQAELDMSAIPRKRGRPR 2048

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            +  P+ D      V +  S +     S       S        + G     ++  V    
Sbjct: 2049 KIHPSEDVGSK-AVKEEGSPKKKEAPSIKRRSTRSTAAKSENTDVGKPASGKSILVPNKE 2107

Query: 697  VS 698
            +S
Sbjct: 2108 LS 2109


>gi|224070158|ref|XP_002196431.1| PREDICTED: retinoblastoma binding protein 6, partial [Taeniopygia
            guttata]
          Length = 1737

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 45/185 (24%), Gaps = 14/185 (7%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                         EK        +           P+ ++  +     EA    P S+  
Sbjct: 1011 KTDSVKTSSSQKDEKALGTPRKAHPKVAKDHPETRPAKEEKAKKEHPKEAKAEKPSSKEE 1070

Query: 613  EDIQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVS------DVSSIQNVIDDSFD 665
            +  +    S+ S     +++R+   +     +   A            S       +   
Sbjct: 1071 KSKKPAEKSKLSDAKLEKRKRKAEEKADKEHEASSAKAYKLETAELKTSPKGKAEPEGEK 1130

Query: 666  MYMEPSDITNHNLLENGAHGFTENYD-------VSIPPVSTPEMESSNSSSDPIVKKTRW 718
                P       L                     ++PP      +   SSS    +KT+ 
Sbjct: 1131 GERTPEKDKAAFLNNPSKKIKLNRETGKKIVSGENVPPGKEAVEKPEPSSSKVKAEKTKG 1190

Query: 719  WKRRK 723
              RRK
Sbjct: 1191 KARRK 1195


>gi|198455645|ref|XP_001360084.2| GA12417 [Drosophila pseudoobscura pseudoobscura]
 gi|198133334|gb|EAL29237.2| GA12417 [Drosophila pseudoobscura pseudoobscura]
          Length = 579

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 38/168 (22%), Gaps = 10/168 (5%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                   +    +       K  +  Q+P          Q          +S    + +
Sbjct: 192 GSPDQSPPRRKRDEDQSPPRRKRVNSDQSPPRRGRKSSPDQSPPRRRRDSDQSPPRRRRS 251

Query: 619 IVSEESTGVIRKR------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
             S +S     +R        R+ RR                S      DS        D
Sbjct: 252 HNSNQSPPRKGRRSSADQSPPRKGRRSSPDQSPPRRRRDVDQSPDRRRKDSDQSPPRKRD 311

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
           ++      N           +         E S     P  +K+RW K
Sbjct: 312 LSPPRRRRNSDQSPPRRRRSASRERRPRIKEES----PPGRRKSRWAK 355


>gi|315044863|ref|XP_003171807.1| cupin domain-containing protein [Arthroderma gypseum CBS 118893]
 gi|311344150|gb|EFR03353.1| cupin domain-containing protein [Arthroderma gypseum CBS 118893]
          Length = 615

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 42/158 (26%), Gaps = 2/158 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                 L+    +     + P            +A     + +  ED    +++  S G 
Sbjct: 213 SDDANHLIEDEAEDNEFVEPPGDYHEAATHDDVDAESSGAEEDQAEDSPAPVLNTSSKGN 272

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            RK   +   +       +          +   ++         +              +
Sbjct: 273 KRKELDKDVEKSDDKSTRNPSAKRRGRKPKGQQEERGQEPNTDDENPRPAKKVKKTTTKS 332

Query: 688 ENYDVSIPPVSTPE--MESSNSSSDPIVKKTRWWKRRK 723
            N  ++       +  +E+   +  P+ KK  +W+  K
Sbjct: 333 SNLQMTTEQEKDLQNVVENITKNDGPLNKKRTYWRNEK 370


>gi|258575579|ref|XP_002541971.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902237|gb|EEP76638.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 896

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 47/184 (25%), Gaps = 20/184 (10%)

Query: 534 QKRATIVEYEARFGVSINV-----VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
           +K   + E  +R  + I V          +  +    E+ +           + +     
Sbjct: 96  RKETLLKEIHSRNKIGILVDRRFGENDPTMTPEERAAERFARESQRRLKKESMFNLEDDE 155

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
             +  +    Q          +  ED  +    ++ +G  +KR+R               
Sbjct: 156 DEEMVLTHGGQTLTFDETAGDDFEEDDLNGSEEDDESGKEKKRKR--------------- 200

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
           +V +            +   E        + E  A      Y+         ++ ++   
Sbjct: 201 LVEEDDMEGLAEASDEEGQPERKKSKQEVMKEVIAKSKMYKYERQKAKEDDDDLRATLDK 260

Query: 709 SDPI 712
             P 
Sbjct: 261 GLPT 264


>gi|225010592|ref|ZP_03701063.1| transcription termination factor Rho [Flavobacteria bacterium
           MS024-3C]
 gi|225005421|gb|EEG43372.1| transcription termination factor Rho [Flavobacteria bacterium
           MS024-3C]
          Length = 588

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 3/157 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            + K   ++ +      +   +  P     +     +     +    + E + +      
Sbjct: 23  KVPKFKTLKKIDLVYQILDLQATNPKAVVAVATPVLEGKTDDVLSKSNSEAVTETTKEAS 82

Query: 624 STGVIRKRRRRRRRRRPATDHHDAG-VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
               + +R+   R R+P  ++      V+  SS +     +     +P  I N       
Sbjct: 83  VNAEVVRRKPNPRPRKPKEENDQVSFKVATQSSDKTTEATARPERTKPEGIPN--KKSPE 140

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
           A         S  P   PE + +N  + P  K T   
Sbjct: 141 AEEQNNGRIQSNRPNRRPEGKQNNREARPTEKSTEQR 177


>gi|148230727|ref|NP_001086696.1| cyclin-dependent kinase 11B [Xenopus laevis]
 gi|50414818|gb|AAH77321.1| MGC80275 protein [Xenopus laevis]
          Length = 788

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 63/226 (27%), Gaps = 10/226 (4%)

Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELA 559
           +  L  + +   +          + +      + KR ++ E E R   + I +       
Sbjct: 10  VKTLDEILQEKKRRKEQEEKTEVNPNKNADDRDSKRDSLEEGELRDQKMEITIRNSPY-K 68

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE--------ALLPIPKSES 611
            +    ++G    +L     +     +   + K+ +   +          +     + + 
Sbjct: 69  REDSIEDRGEEDDSLAIKPPQQILRKEKSHHRKDEKRKEKRRHRSHSAEGSAGKHIRVKD 128

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            +   +            +R   R++RR     H       +  ++   +    +  +  
Sbjct: 129 KDREHERRKRRREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKVREQQK 188

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           +       E  A    +  D+     +       + S    V ++R
Sbjct: 189 EQRELKERERRAEERRKERDLKREAAAHHRTAREDHSEKNKVIRSR 234


>gi|270015968|gb|EFA12416.1| hypothetical protein TcasGA2_TC004983 [Tribolium castaneum]
          Length = 1080

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 69/288 (23%), Gaps = 32/288 (11%)

Query: 448 KKDRARVQVGAISNFGLLEMSRQ-RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506
            +D+ +         G     R+ R R    E               +  +  A   L  
Sbjct: 50  SEDKTKTHSKKDPALG--PGVRELRSRFVYSERKYSSSLRSDNLNTRKRIALDARHSLTV 107

Query: 507 VEEYLLQYTAHNIIVHTHSDVVL----YLLNQKRATIVEYEARFGVSINVVIG----IEL 558
                +   +     +   D +           R+ +   E R  +S+  +        +
Sbjct: 108 YSSRNMHNDSDMYNGNDSDDDMYSRKPRRSRHLRSHLDRIERRTALSLRPISQKCYADSM 167

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           +D      K        N             Y       + +E     P     E  +  
Sbjct: 168 SDTELRRSKRQRKVQFENMSWLADDQMHKMGYPNLNTPGYSEEDSRDAPDVRLEEPSRST 227

Query: 619 IVSEESTGVIRKR----------------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             S +     R+                  RRRR      +        +   ++N  + 
Sbjct: 228 RHSNDVNSGKRREIKSPKYLYNYETNDVPPRRRRS-----EITSRSSERNQKELRNRRES 282

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
           +     E ++I   +     +   +E         S   +E  ++ S 
Sbjct: 283 NDKENNEETNINGRSSHSRSSKRTSEAAGEDSEKKSDDTVEDDSNDSK 330


>gi|253572643|ref|ZP_04850044.1| transcription termination factor rho [Bacteroides sp. 1_1_6]
 gi|251837775|gb|EES65865.1| transcription termination factor rho [Bacteroides sp. 1_1_6]
          Length = 740

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/149 (7%), Positives = 34/149 (22%), Gaps = 4/149 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +               + +   + +K      + +       +   ++        E   
Sbjct: 85  RSRTAAPKKEEKVAPAAKNAEVTKNKENAPAAKPQQQPKEEAANKAKEAPVAEPKAEKAA 144

Query: 627 VIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             +++  R R+        ++ +      +         +    + P+        E   
Sbjct: 145 P-KRKVGRPRKDANIAEKAENKEVENAKPIVKPTEEKAVAEKTVVAPAAEKATPTQETEK 203

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                   V+  PV     + S    D  
Sbjct: 204 KVKENKPAVAEKPVIAKPQKKSAPVIDEE 232


>gi|219112679|ref|XP_002178091.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410976|gb|EEC50905.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1458

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 42/171 (24%), Gaps = 13/171 (7%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            IE+    +  +    +           +++E   ++  L      E +E  +      E
Sbjct: 679 QIERRRLDEERIRHEAEREQRISLELKRQDMESKQREIELRQQQAKERIELERLQKEEVE 738

Query: 624 STGV-----IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                     RK R    RR+   +  +     ++  +        ++  +         
Sbjct: 739 QQRKLEEEAERKARDEEVRRQLELERLEKTRREELKRLDEEARKREEVEKQRLQREAEEA 798

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNS--------SSDPIVKKTRWWKR 721
                        +++      +     +              KK   WKR
Sbjct: 799 EARRQEEAARQKKLALEKEKERQQCEEKARLNDVRWREQTEEAKKILLWKR 849


>gi|260813252|ref|XP_002601332.1| hypothetical protein BRAFLDRAFT_123239 [Branchiostoma floridae]
 gi|229286627|gb|EEN57344.1| hypothetical protein BRAFLDRAFT_123239 [Branchiostoma floridae]
          Length = 465

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 34/150 (22%), Gaps = 3/150 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           KG        +  +        S  +                +   +         +S  
Sbjct: 112 KGRQQSDSDQSPPRRKRHDSDQSPPRRKRHDSDQSPPRKRKPNSDSDQSPPRRKRHDSDQ 171

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              ++R R      +          D+S  +   D   D+        + +  +      
Sbjct: 172 SPPRKRGRDHGTNQSPKRRRHDSDDDLSPPRRRADADEDLSPPRRRQRHDSDSDLSPPRP 231

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +       PP   P   S     D   +K+
Sbjct: 232 SRADSDQSPPRQKP---SDGRRKDKQQRKS 258


>gi|294658357|ref|XP_002770767.1| DEHA2F07678p [Debaryomyces hansenii CBS767]
 gi|202953070|emb|CAR66294.1| DEHA2F07678p [Debaryomyces hansenii]
          Length = 1064

 Score = 39.6 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 47/203 (23%), Gaps = 35/203 (17%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E   G+ I              ++         +        S     D+ +      E 
Sbjct: 731 EEEHGLKIV-------------MDNKKQDLEHSSKSSNKIQSSLNEVDDEKVSAKEDTEP 777

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS-DVSSIQNVID 661
                 SE   + ++      +      R+ +  +     D  +      +       ++
Sbjct: 778 SKEDITSEPASESKEGKKRLSAKERRMLRKGKDIKVSENEDTDEDVFDPIEQEMKNLKLE 837

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFT---------------------ENYDVSIPPVSTP 700
           ++     EPS     N+    +                             V        
Sbjct: 838 ETKKKTAEPSSQKPPNVRGKKSKMKKIAAKYADQDEEERKIRMEALGTLKQVEAEKQKQI 897

Query: 701 EMESSNSSSDPIVKKTRWWKRRK 723
           + E +  S D  V +    +RRK
Sbjct: 898 DEEENKESKDKYVNEALNAERRK 920


>gi|320334709|ref|YP_004171420.1| ribonuclease R [Deinococcus maricopensis DSM 21211]
 gi|319755998|gb|ADV67755.1| ribonuclease R [Deinococcus maricopensis DSM 21211]
          Length = 1281

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 40/167 (23%), Gaps = 7/167 (4%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +++    +A +     V +          +     D    P  +    +          
Sbjct: 108 TLKRTRGRKAALQEPQAVPAPVAELDAAPEVAAERPDITPAPEAEPVVADTPAVQAEPAA 167

Query: 624 STGVIRKRRRRRRRRRPATDHHDAG-------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           +      + RR RR+    D            V    +               P   T  
Sbjct: 168 APAPTEAKPRRGRRKNAEPDAPTPEPTPAVSTVAEAPAESAPAKRTRRKNARVPDAPTPA 227

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + E  +       D   PPV       +  ++ P  +      RR+
Sbjct: 228 PVAEALSVEAAVEGDEQEPPVPEAPAMDAPVTAKPTPEAPARQTRRR 274


>gi|328772567|gb|EGF82605.1| hypothetical protein BATDEDRAFT_86542 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 858

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/161 (6%), Positives = 45/161 (27%), Gaps = 6/161 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +   +         +    ++  +   ++   L   + + LE+++     E+   
Sbjct: 469 RLQEEKQRQDERRLQDEKRRQQELEELQKQRQRELKELEKQRQQELEELEKQRQEEKRLQ 528

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE------ 680
             ++R+  +RR+       +     ++  ++       +   +        L +      
Sbjct: 529 DEKRRQDEKRRQEEKRLQDEKRRQQELEELEKQRQQELEKLEKQRQQELEKLEKQRQQEL 588

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  +     +      E+E          ++    +R
Sbjct: 589 EKLEKQRQQELEKLQKQRQQELEELERKRQQDFEEDLKRQR 629



 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 50/189 (26%), Gaps = 19/189 (10%)

Query: 554 IGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ------------- 599
               L D  F I E G  ++       +     Q    +K  +   +             
Sbjct: 388 PDESLGDDTFKIPEDGETIEDAKQQRDEELEQEQKRQEEKQRQEERRLQEEKRRQEEKRR 447

Query: 600 --DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
             +  L    + +   +  +  + EE      +R +  +RR+   +        ++  ++
Sbjct: 448 QEERRLQDEKRRQEELERLEKRLQEEKQRQDERRLQDEKRRQQELEELQKQRQRELKELE 507

Query: 658 NVID---DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                  +  +   +                  E   +        E+E         ++
Sbjct: 508 KQRQQELEELEKQRQEEKRLQDEKRRQDEKRRQEEKRLQDEKRRQQELEELEKQRQQELE 567

Query: 715 KTRWWKRRK 723
           K    ++++
Sbjct: 568 KLEKQRQQE 576


>gi|301100550|ref|XP_002899365.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262104282|gb|EEY62334.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1586

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/176 (8%), Positives = 41/176 (23%), Gaps = 18/176 (10%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E+        ++     +   A    +            P P+     D  ++  +    
Sbjct: 1351 ERRGHRDHRESSPAAGSNSMNAIETRERSGSASGKHERSPAPRRSRSGDRTEDRGNTSEN 1410

Query: 626  GVIRKRRRRRRRRRP----------------ATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                + R R R +                   T+   +         +    +   ++  
Sbjct: 1411 RRPSRERGRERGQSNRGGGRGEGGRRGRGDRDTNVQLSSRSRSHDRHERNSRNRGPIHGR 1470

Query: 670  PSDITNHNLLE--NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                TN       +     T +   +  PV +    +    ++         + R+
Sbjct: 1471 EDSDTNSVRKHLVSSKAASTGSPARNEEPVKSTSSPNPERDAESTKSNRGARQERE 1526


>gi|195330135|ref|XP_002031763.1| GM23870 [Drosophila sechellia]
 gi|194120706|gb|EDW42749.1| GM23870 [Drosophila sechellia]
          Length = 2401

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 17/188 (9%)

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +        E +                   ++K SP +       +  S+S     +  
Sbjct: 1059 ELEDRFNALERK-----------------MSVQKSSPSKNKKEPPDEKESESTKEPEEPE 1101

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                  +            +    +    E+       + + ++ +  +   +  + +D 
Sbjct: 1102 ESEKANENTSGSQSPIAKKDPKDSDQKKPETKEKQSPIKNQNQKVKAKSPKSEEIIENDT 1161

Query: 654  SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
            S  +    +S     +  +       E   H   E    S         E+   +     
Sbjct: 1162 SKPKEDSQESKTATNKKVEANRKLSSEESDHTKKEKRVESPGKNDKETAETKIENVKDSS 1221

Query: 714  KKTRWWKR 721
            +K+ + K+
Sbjct: 1222 RKSDYQKK 1229


>gi|116207854|ref|XP_001229736.1| hypothetical protein CHGG_03220 [Chaetomium globosum CBS 148.51]
 gi|88183817|gb|EAQ91285.1| hypothetical protein CHGG_03220 [Chaetomium globosum CBS 148.51]
          Length = 655

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 1/154 (0%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I+  +         ++  + +   +   +             P SE  +   +      
Sbjct: 191 QIDGTTTTTTPTPIANQASTPNAPTAAPADRSSRVAVTPA-ETPISEQAQPASETAPEPA 249

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +      + +R R+R   T   +     D S+ +                      E  +
Sbjct: 250 TNSSQTAKPKRGRKRTTTTVAIEDAGEQDPSTSRKRPRKRAAPLPGEEGHQPAARRETRS 309

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              + +           E E++        +  R
Sbjct: 310 RKRSASAVEDEEVEEDGEEENAGQHKKKPPRPQR 343


>gi|318061483|ref|ZP_07980204.1| hypothetical protein SSA3_26313 [Streptomyces sp. SA3_actG]
          Length = 683

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 34/156 (21%), Gaps = 9/156 (5%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS---EESTGVIRKRRR 633
             H      +A   D+  +     +      K   ++   +              + R  
Sbjct: 257 DQHAQRMKQKAAGVDRASKSKGARQDAKDRAKVARIKAQGERKQRIRDGRQAAKDKARDA 316

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLENGAHGFT 687
           +R+RRR   +       +   +    +         P                    G  
Sbjct: 317 KRQRRREEKEARTLLGDALAKTAGKRLRKRRKSLAPPIISKTGKKRRKEKPAPPPPRGVL 376

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +      P        +  +       + R W  RK
Sbjct: 377 DKVVKDTPKPPPTMPRAGAAKKKSAGGRRRKWSFRK 412


>gi|291235177|ref|XP_002737523.1| PREDICTED: La autoantigen-like [Saccoglossus kowalevskii]
          Length = 709

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 12/183 (6%)

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL--PIPKS 609
           +            I+K     + V    K  +D+ +       +   + EA+    + + 
Sbjct: 236 ITGDKHPHQ-HGDIQKEIEDDSRVKKRRKRSNDNSSSDESDAKKRKKESEAVQGPQVKEK 294

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                  D    +++     + R+ + R    T+  D+ + SD         +       
Sbjct: 295 PGNRKDTDKHGKDKNKHRKDEDRKDKDRYEKDTNKDDSQIKSDGKDGNKRRKEDKPSKET 354

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEME---------SSNSSSDPIVKKTRWWK 720
               T+ +         + N   +       + +           N       KK+   K
Sbjct: 355 DRHKTDRDTCIKDEEKLSRNQSDNNEDSGKKDKDGHGIVEDSHDKNKDKLRESKKSDEQK 414

Query: 721 RRK 723
           R +
Sbjct: 415 RER 417


>gi|115397837|ref|XP_001214510.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114192701|gb|EAU34401.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 1081

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 14/160 (8%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                 +        S   S  K+ +     E+     +++ + +   N    E+    R
Sbjct: 731 EALIAQHDSPASPQASNMRSEAKHRKDAKPKESRKRRRRTDPVIEENLNGSVPETPDDSR 790

Query: 630 KRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            +RRR+         PA     A  ++     Q  + D          +      E    
Sbjct: 791 PKRRRKTVTGPTAPSPAPQPTPASKLNPTPRSQKRVKDGKQSKTGSEAVGEKTAAEPPKT 850

Query: 685 GF---------TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                       E   V+  P + P  + S S+   + K 
Sbjct: 851 KERKPASQLKIKERKTVAETPKTKPSKDMSGSTKVKVPKN 890



 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 1/160 (0%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F++E     +A +    +      A +   ++  +    A    P S    +++ +    
Sbjct: 696 FFVEDVDEEKAKIKAREEARKRGIATNRSMSVGDIEALIAQHDSPASPQASNMR-SEAKH 754

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                 ++ R+RRRR  P  + +  G V +             +    +           
Sbjct: 755 RKDAKPKESRKRRRRTDPVIEENLNGSVPETPDDSRPKRRRKTVTGPTAPSPAPQPTPAS 814

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               T      +      +  S         +  +  +R+
Sbjct: 815 KLNPTPRSQKRVKDGKQSKTGSEAVGEKTAAEPPKTKERK 854



 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 42/163 (25%), Gaps = 2/163 (1%)

Query: 557 ELADKLF--YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
           ++    F   +++            K G  +       +IE +         P++ ++  
Sbjct: 691 DMDSPFFVEDVDEEKAKIKAREEARKRGIATNRSMSVGDIEALIAQHDSPASPQASNMRS 750

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
              +    +     ++RRR         +        D    +     +      P+   
Sbjct: 751 EAKHRKDAKPKESRKRRRRTDPVIEENLNGSVPETPDDSRPKRRRKTVTGPTAPSPAPQP 810

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                 N      +         +  E     ++++P   K R
Sbjct: 811 TPASKLNPTPRSQKRVKDGKQSKTGSEAVGEKTAAEPPKTKER 853


>gi|13506761|gb|AAK28322.1|AF230482_1 tight junction protein ZO-1 [Hydra vulgaris]
          Length = 1695

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 39/147 (26%), Gaps = 3/147 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              ++  +       +++     ++     +D       +       ++   +E      
Sbjct: 219 KSEKSHRSRSKNREDNAEGEKSHRSRSKNREDAETGEKSEKSHRSRSKNREDAETGEKSE 278

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +  R R R R    D           S      ++ +  +     T  +L +      +E
Sbjct: 279 KSHRSRSRNRE---DAETGEKSHRSRSKNREDPETEEKSLRSKSKTREDLSKTTESEKSE 335

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715
               S    S   ME  NS       +
Sbjct: 336 KIPKSQSKASLGGMEKENSDRQKSKTR 362


>gi|326433752|gb|EGD79322.1| hypothetical protein PTSG_09736 [Salpingoeca sp. ATCC 50818]
          Length = 906

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 45/163 (27%), Gaps = 8/163 (4%)

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
            I +     +     +          V       + +      ++      D++      
Sbjct: 498 PIALPGSTGMHPAHDHALPLDTHMQHVPAVDLPSASAMTGGRKESEGVPDTDDSGDEGDV 557

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDS 663
            +S  D  +      +    R++  RR +     R   T+ H  G  +      +    +
Sbjct: 558 DDSGSDADETAT---THPSARRKHARRNKSRVPQRATGTNTHKRGAKATQQRRASARRTA 614

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
                 PS I N N  +  +       + S    ++   +S +
Sbjct: 615 SCSADTPSAINNTNHTDRTSSNHHTTTNTSTNNNNSKRSKSVS 657


>gi|242037389|ref|XP_002466089.1| hypothetical protein SORBIDRAFT_01g001010 [Sorghum bicolor]
 gi|241919943|gb|EER93087.1| hypothetical protein SORBIDRAFT_01g001010 [Sorghum bicolor]
          Length = 535

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 51/222 (22%), Gaps = 21/222 (9%)

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           + R ++      ST   C    G     S+ +V   I    E  + +     +   +  D
Sbjct: 7   LKRPKLEKDDNGSTYCPCPASNGEDDDISEEAVVALIAHR-ERDVERCKLKLLHYQSLLD 65

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
                L + ++ +  +  R           +L           P+               
Sbjct: 66  TAEMKLEEAQSRLARFRDR--KPPTTRSEPKLPTP--------PIHRDPKPSPPPIQRDL 115

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
            PS           +  LP  K+ S              G   +   R            
Sbjct: 116 KPS----------PQPPLPEKKAPSPAPQPSARPHLVIPGTSNRPAPRPEPMPGLKKAAA 165

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
               S  +  +    +      +     + NL+ N       
Sbjct: 166 PSSSSSPAPPERSRKEEKKPKRKIEQKEHQNLIPNVKKSSAT 207


>gi|255576469|ref|XP_002529126.1| prp4, putative [Ricinus communis]
 gi|223531405|gb|EEF33239.1| prp4, putative [Ricinus communis]
          Length = 1033

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 32/150 (21%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
           +       +                  +D+        +   +       + S    R+R
Sbjct: 315 EQGRERSRERDQRRDKDRERSRERDQRRDKDRERSRDRDLRREKGREGSRDSSVDRYRRR 374

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
            + + R R      D           +   D         + +    + N      E   
Sbjct: 375 EKEQERSRDREVDRDLKRQKQQERSWDREVDRDQRKERQWERSLDREMINDRRREREQGR 434

Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                +     +  + S D  + +     R
Sbjct: 435 SREEELDKKRQKEKDRSKDKSMSRANERDR 464



 Score = 37.6 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 42/180 (23%), Gaps = 16/180 (8%)

Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL-------PIPKS 609
            + ++   +++    +   N               ++   V ++ +              
Sbjct: 238 SIVEEDVLLKRRQHNEKAENDSADERMPGHDEDLWRSSRDVERECSTNYIRSQGGEERHG 297

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVID 661
                 ++  ++ E      + R R R         R    D                 +
Sbjct: 298 SWNTQGREREMNWEQRREQGRERSRERDQRRDKDRERSRERDQRRDKDRERSRDRDLRRE 357

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              +   + S        +          D  +      E  S +   D   +K R W+R
Sbjct: 358 KGREGSRDSSVDRYRRREKEQERSRDREVDRDLKRQKQQER-SWDREVDRDQRKERQWER 416


>gi|19527026|ref|NP_598568.1| leucine-rich repeat-containing protein 59 [Mus musculus]
 gi|81916386|sp|Q922Q8|LRC59_MOUSE RecName: Full=Leucine-rich repeat-containing protein 59
 gi|13905170|gb|AAH06877.1| Leucine rich repeat containing 59 [Mus musculus]
 gi|26343467|dbj|BAC35390.1| unnamed protein product [Mus musculus]
 gi|42490949|gb|AAH66172.1| Leucine rich repeat containing 59 [Mus musculus]
 gi|56206968|emb|CAI24964.1| leucine rich repeat containing 59 [Mus musculus]
 gi|74151576|dbj|BAE41137.1| unnamed protein product [Mus musculus]
 gi|148683988|gb|EDL15935.1| leucine rich repeat containing 59, isoform CRA_a [Mus musculus]
          Length = 307

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%)

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              + R R+RR     +              +       +   E          +  +  
Sbjct: 152 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 211

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
             E         +      S     P  K TR W
Sbjct: 212 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 245


>gi|46111831|ref|XP_382973.1| hypothetical protein FG02797.1 [Gibberella zeae PH-1]
 gi|84029316|sp|Q4IJ11|IWS1_GIBZE RecName: Full=Transcription factor IWS1
          Length = 428

 Score = 39.6 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 3/158 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++     A+        SD+ +   +   E    + A +     +  ED+   + + +  
Sbjct: 20  QEQEYEDAVAAADSDHDSDALSEVDEDQFEDYDPETANIEDRPVDIDEDVARTLKATKRK 79

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +  ++ R               +   + +  D S           +    +     
Sbjct: 80  RTEGEAPKKPR---EGRRDKKRRDRDEDVEMDDAEDGSKKSRRSRRVAVDGERRQKSKAA 136

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E  +            + + + D  +KK    KR+K
Sbjct: 137 TPEPENEDHLSPEERRKRAIDRALDAAIKKPSGQKRKK 174


>gi|298386922|ref|ZP_06996477.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298260596|gb|EFI03465.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 511

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/209 (9%), Positives = 41/209 (19%), Gaps = 33/209 (15%)

Query: 527 VVLYLLNQKRATIVEYE--ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
           + +     K  +++E E        I+++    L       ++    +   N        
Sbjct: 313 IAMNKKGMKPDSLLEAEVKQESKKPIDLLEQESLT----RFDRNRNNKDGNNGNRNKKKR 368

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-------------- 630
                     +    +    P               +    G                  
Sbjct: 369 KGNNDNRPQAQAEGGNRPQQPQRGENENRPQPSENGNRGERGDRENRPRNNNNNNRNRGQ 428

Query: 631 ------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                   RR  R +      +     +    QN          +P      N       
Sbjct: 429 NQGRNNENRRPERGQNQERPQNPNRPQNQERPQNRER-------QPKQERPQNQERPQEQ 481

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           G   N +    P      E   ++  P  
Sbjct: 482 GRQPNQERIPRPERNSNQEKPQNNEKPAQ 510


>gi|91082491|ref|XP_972709.1| PREDICTED: similar to programmed cell death protein 11 (pre-rrna
           processing protein rrp5) [Tribolium castaneum]
          Length = 953

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/387 (11%), Positives = 116/387 (29%), Gaps = 26/387 (6%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
           + ++ + KE      +       +    ++     S EE         E  EE++     
Sbjct: 496 ALKEKINKEEENDVEEDSDEEIVIEEEALSDEEIVSDEEALSDEEIVSE--EEALSDEEI 553

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
                  + +    E+  +    +  + +  +  +  +     E+  +    +TT    +
Sbjct: 554 VSEEEALNDEEIVSEEEEEALNDEEIVDKQNEESKENI--SDSEDEDSAKPKITTLDQSS 611

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
              +      S  ++      N +  ++ +E    ++       +     A   K E +R
Sbjct: 612 NAETPKESVLSGAQSFYSTEDNNLKEESSEEEEEEIDQSKKKKKLTPAERAEIAKKEEER 671

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
             +    L D+            L+    N  K  ++ +     +  +       + A D
Sbjct: 672 ISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQYMSMHIATTELDKARAVGKRALD 731

Query: 324 FMKLL--MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381
            + +      Y   +      +    +   +   +             Y+ + Q  A   
Sbjct: 732 TINMTLVKEKYNVWIALLNLENMYGTKESFDKTFEEAV--RCNDSLEIYLNVIQMLA--- 786

Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441
                        +++   +     A+E        +++ +    +  + + K  R+V++
Sbjct: 787 ---------TSGKLQEMEEKIKKVRAKEKQNTKMWLEISRI----YYSLGQFKEARNVKE 833

Query: 442 KLKESLKKDRARVQVGAISNFGLLEMS 468
              +S+  D+ R Q   I  FG++E  
Sbjct: 834 SALKSI-LDKKR-QFDLIVKFGIMEFQ 858


>gi|268566341|ref|XP_002639696.1| C. briggsae CBR-TAG-214 protein [Caenorhabditis briggsae]
          Length = 1173

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 2/126 (1%)

Query: 599  QDEALLPIPKSESLEDIQDNIVSEESTGV--IRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
            + ++     + E  ++  ++    E        + +++ R+R    D +D+         
Sbjct: 875  EADSDHEQERKERKKNRGESKEKHEKERRYIDEQDKKKERKRDRNADEYDSDAPQVKIKR 934

Query: 657  QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +    D         +   +           E  D         E E  N       K+ 
Sbjct: 935  EEKNKDDQQDRDRKKEDPENGKDWRRKERDREVKDKKHDKYKEKEREDDNEKVKQREKEK 994

Query: 717  RWWKRR 722
               K R
Sbjct: 995  ERQKER 1000



 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 1/125 (0%)

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           +      Q+       + ES E  +      +     ++R+R R      +D     +  
Sbjct: 875 EADSDHEQERKERKKNRGESKEKHEKERRYIDEQDKKKERKRDRNADEYDSDAPQVKIKR 934

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
           +    ++   D      +P +  +    E       + +D         + E        
Sbjct: 935 E-EKNKDDQQDRDRKKEDPENGKDWRRKERDREVKDKKHDKYKEKEREDDNEKVKQREKE 993

Query: 712 IVKKT 716
             ++ 
Sbjct: 994 KERQK 998


>gi|327285131|ref|XP_003227288.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Anolis
           carolinensis]
          Length = 2471

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 9/149 (6%)

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
             +        Q  +     E + +  A         L + +   V  E TG  ++RR+ 
Sbjct: 420 DESRKLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEETGERKRRRKG 479

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
              R P  +    G     S              +PS IT     +   +  ++N D  +
Sbjct: 480 GGERTPKEERPRKGRGQGGSGK-------SKGRGKPSTITPVVGKKRKRNASSDNSDAEV 532

Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            P   P  E  +S      +  R  KR+K
Sbjct: 533 MPSQAPHEEEESSIQKR--RSNRQVKRKK 559


>gi|291409415|ref|XP_002720996.1| PREDICTED: serine/threonine-protein kinase PRP4K [Oryctolagus
           cuniculus]
          Length = 994

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 5/158 (3%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I +         +   +    ++       +      + +   K       +D    +E+
Sbjct: 267 INESRSRDRGKKSRSPIDLRGKSKDRRSRSKERKSRRSEIDKEKKPIKSPSKDASSGKEN 326

Query: 625 TGVIRKRRRR-RRRRRPATDHHDAGVVSDVSSIQNVI---DDSFDMYMEPSDITNHNLLE 680
                +R  R  +RR  +    D    S    I +       S    + P        LE
Sbjct: 327 RSPS-RRPGRSPKRRSLSPRPRDKSRRSRSPLINDRRSKQSKSPSRTLSPGRRAKSRSLE 385

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                       S       ++ S    S  +    RW
Sbjct: 386 RKRREPDRRRLSSPRTRPRDDILSRRERSKDVSPINRW 423


>gi|195166974|ref|XP_002024309.1| GL14973 [Drosophila persimilis]
 gi|194107682|gb|EDW29725.1| GL14973 [Drosophila persimilis]
          Length = 575

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/155 (9%), Positives = 36/155 (23%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                IEK    +A             A      +    + EA     K    +  +++ 
Sbjct: 292 QPEKIIEKQEIEKAEKTGKKVEPKTKPAADEGDGLAEGKKGEAKAKAEKDSDKDADKEST 351

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
            +       +K  + +    P      A   S         D      ++  +       
Sbjct: 352 STSTPAKKDKKEGQPKTASTPDPKQSSAKKASPAGKPGQANDAEGTGDVKERNTEKTETE 411

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                        +    S+  +++   +   + K
Sbjct: 412 PAAGKKQPPPPASAAAEPSSESIDNKKKADKTVEK 446


>gi|115976443|ref|XP_001187228.1| PREDICTED: similar to centromere protein CENP-C [Strongylocentrotus
           purpuratus]
          Length = 1303

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 5/157 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    Q   +   +   D  +   + + +   Q  +    P+ E  E   +   S E   
Sbjct: 187 QSELSQEEGDEQTETEEDDASGPVEHDDQQSSQTTSEPSSPQEEVPEPQAETTSSSEQGT 246

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             + R  +RR  RP  D          S        +F    E  +      +E      
Sbjct: 247 TAQTRGSKRRSTRPDGDLSGPVPRETRSRKSISQSKNFVENEEMDEREAVKAVETRGRRS 306

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           T   + S+   +  + ++  S+           +RRK
Sbjct: 307 TRQSNASVLNENELQKDNEKSAKKGA-----DTRRRK 338


>gi|242004359|ref|XP_002423063.1| Cell growth-regulating nucleolar protein, putative [Pediculus
           humanus corporis]
 gi|212505994|gb|EEB10325.1| Cell growth-regulating nucleolar protein, putative [Pediculus
           humanus corporis]
          Length = 385

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 41/153 (26%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E     + L +          +    ++ +   QD       K+ES +  +D    ++S 
Sbjct: 155 EANKEQKQLTSKQVTKPVKQDSNEQKQSKQDPKQDPKQSKQSKNESKQKGEDGKQVKQSK 214

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++++  +       +          S  +                   N+ E     
Sbjct: 215 SDSKQQKPSKDEVTQQKEKKGDSKEKKPSKGEVKQQKGDKEKKPKKSENKENIAEKQESP 274

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            T +     PP S    +     +    KK + 
Sbjct: 275 KTASKQAVKPPKSNNNQQGEGEKAASKPKKVKT 307


>gi|159129088|gb|EDP54202.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
          Length = 1350

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 1/154 (0%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
           +EAR G  +N ++   L +K     K + +    +  H  G      +     + V    
Sbjct: 551 FEARRGSQVNGIMDPSLQNKESVHPKDASMHEASSARHPPGPTWPPRAAAGPPDSVANAS 610

Query: 602 ALLPIPKSESLEDIQDN-IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                       + QD    + +   V  + R  + +R  A          + ++ +  I
Sbjct: 611 RAASQSSVHPAPEAQDATAQAPQEDPVAMQERIMKEKRLEARQRRLEQEEKEEAAKRERI 670

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
               +    P +       E+      E      
Sbjct: 671 RQKLEALGPPPEKPKSKNKESREGDKAEAKATPT 704


>gi|313244779|emb|CBY15486.1| unnamed protein product [Oikopleura dioica]
          Length = 1258

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 53/245 (21%), Gaps = 15/245 (6%)

Query: 471  RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
            +I+  V +  + V +   G   I+S  S   + L+S                    V   
Sbjct: 858  QIKEGVDQGKSYVSSAITGTELIKSSDSFESTPLKSP---------GVASESEPPTVTPQ 908

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
              +     ++         I V    +   +   + +    +       +       P  
Sbjct: 909  ASDLDDDALMALAKE----IVVPGDKKKQKQATPVTRKLEAEKEKTPSTRARRSRVMPPR 964

Query: 591  DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
            +   E     E  L  P    +  ++        +   R +R RR      T        
Sbjct: 965  EDTSEESSGPEDRLTSPLKPRV--LKKRKQESAKSSEDRPKRIRRGNTPEPTVETTTPSR 1022

Query: 651  SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
               +                       L  +      +            E     +   
Sbjct: 1023 PQRTRGGPTSASRSRKTEPSEPKLPDRLTRDETPKGRQTRREGSRATPKVEKTEPKTIKR 1082

Query: 711  PIVKK 715
               K+
Sbjct: 1083 EQRKE 1087


>gi|221122389|ref|XP_002164770.1| PREDICTED: similar to tight junction protein ZO-1 [Hydra
           magnipapillata]
          Length = 1695

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 39/147 (26%), Gaps = 3/147 (2%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              ++  +       +++     ++     +D       +       ++   +E      
Sbjct: 219 KSEKSHRSRSKNREDNAEGEKSHRSRSKNREDAETGEKSEKSHRSRSKNREDAETGEKSE 278

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +  R R R R    D           S      ++ +  +     T  +L +      +E
Sbjct: 279 KSHRSRSRNRE---DAETGEKSHRSRSKNREDPETEEKSLRSKSKTREDLSKTTESEKSE 335

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715
               S    S   ME  NS       +
Sbjct: 336 KIPKSQSKASLGGMEKENSDRQKSKTR 362


>gi|195504329|ref|XP_002099032.1| GE10693 [Drosophila yakuba]
 gi|194185133|gb|EDW98744.1| GE10693 [Drosophila yakuba]
          Length = 1312

 Score = 39.6 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 39/153 (25%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +A   +       S++ S   +       E      KS   E+  +   +   + V+
Sbjct: 268 DSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEDDRKSSGDEEEAEEAPNSSDSEVM 327

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R+RRR++        D                         D  +        H    
Sbjct: 328 PQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKNSSGESDGDGDDDKQKNKRKHIRKI 387

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                +   +    +  +     I  + + + R
Sbjct: 388 IKTKDLDLTTKEAAKEEDDRRKRIEDRQKLYNR 420



 Score = 39.2 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 5/160 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +K   +             S+        E     EA     + +  +   D   +EE+ 
Sbjct: 260 QKSKTMSTDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEDDRKSSGDEEEAEEAP 319

Query: 626 GVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                    +R+RRR+ +     +         +                 + +  +   
Sbjct: 320 NSSDSEVMPQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKNSSGESDGDGDDDKQKN 379

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   +    +    + +  ++ +   ++ R   R+K
Sbjct: 380 KRKHIRKIIKTKDLD---LTTKEAAKEEDDRRKRIEDRQK 416


>gi|115623726|ref|XP_793941.2| PREDICTED: similar to centromere protein CENP-C [Strongylocentrotus
           purpuratus]
          Length = 1416

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 5/157 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    Q   +   +   D  +   + + +   Q  +    P+ E  E   +   S E   
Sbjct: 187 QSELSQEEGDEQTETEEDDASGPVEHDDQQSSQTTSEPSSPQEEVPEPQAETTSSSEQGT 246

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             + R  +RR  RP  D          S        +F    E  +      +E      
Sbjct: 247 TAQTRGSKRRSTRPDGDLSGPVPRETRSRKSISQSKNFVENEEMDEREAVKAVETRGRRS 306

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           T   + S+   +  + ++  S+           +RRK
Sbjct: 307 TRQSNASVLNENELQKDNEKSAKKGA-----DTRRRK 338


>gi|70989663|ref|XP_749681.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|66847312|gb|EAL87643.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
          Length = 1350

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 1/154 (0%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
           +EAR G  +N ++   L +K     K + +    +  H  G      +     + V    
Sbjct: 551 FEARRGSQVNGIMDPSLQNKESVHPKDASMHEASSARHPPGPTWPPRAAAGPPDSVANAS 610

Query: 602 ALLPIPKSESLEDIQDN-IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
                       + QD    + +   V  + R  + +R  A          + ++ +  I
Sbjct: 611 RAASQSSVHPAPEAQDATAQAPQEDPVAMQERIMKEKRLEARQRRLEQEEKEEAAKRERI 670

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
               +    P +       E+      E      
Sbjct: 671 RQKLEALGPPPEKPKSKNKESREGDKAEAKATPT 704


>gi|115968092|ref|XP_001190252.1| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia
            (trithorax homolog, Drosophila) [Strongylocentrotus
            purpuratus]
          Length = 5353

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 10/166 (6%)

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             I+ G             G   + PS ++      +             E ++     EE
Sbjct: 4178 QIQVGHISAREGEKPRGRGRPRKYPSVNEVSRDQIEARKRGRDSACADFEVLEKGQQEEE 4237

Query: 624  STGVIRKRRRRRRRRRPA------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                 ++ R R   ++P       +++ +AG  S       +   S + +  P       
Sbjct: 4238 GMPKRKRGRPRLSDKQPEKDQFVDSENENAGDDSKKRMRGELTSTSDEEHHGPEQDQPRL 4297

Query: 678  LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               + A    +  +  +           + SS     + R    RK
Sbjct: 4298 RTRSSAK-RLKPGEEPVEDGEETLDSKPSVSSRS---EERQVHPRK 4339


>gi|262193480|ref|YP_003264689.1| hypothetical protein Hoch_0155 [Haliangium ochraceum DSM 14365]
 gi|262076827|gb|ACY12796.1| hypothetical protein Hoch_0155 [Haliangium ochraceum DSM 14365]
          Length = 424

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 16/54 (29%)

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +R  R+ RR    D+      +   + QN  D   D      D    N     
Sbjct: 352 ERRDNRQERRDNRQDNRQERRDNRQDNRQNRRDARQDNRQNRRDARQDNRQNRR 405


>gi|221132685|ref|XP_002159410.1| PREDICTED: similar to budding uninhibited by benzimidazoles 3
           homolog [Hydra magnipapillata]
          Length = 538

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 61/223 (27%), Gaps = 7/223 (3%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           R +   A+S  R   E +         +  H+ V+          +   E RF     + 
Sbjct: 244 RVRFPKAMSGERRTHEAVGDRAIDCYRMTVHNCVMD-------KVVKTLEERFKAQDTLF 296

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
             +   +   + +    V+ +  T  +            + + +  DE           +
Sbjct: 297 ADMACLNPENFYDIKKNVEQIKKTVPEEYLGMNLAENRNDNDELENDEETAVSSSFSKDK 356

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
           +      S ++  V  ++  R   R+   + +     +    ++   +   +        
Sbjct: 357 EAHGKCKSCKNCPVASRKLERNSNRKLERNSNRKLERNSNRKLERNSNRKLERNSNRKLE 416

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            N N             + +         +   +S+  + + +
Sbjct: 417 RNSNRKLERNSNRKLERNSNRKLERNSNRKLERNSNRKLERNS 459


>gi|242006506|ref|XP_002424091.1| hypothetical protein Phum_PHUM106900 [Pediculus humanus corporis]
 gi|212507397|gb|EEB11353.1| hypothetical protein Phum_PHUM106900 [Pediculus humanus corporis]
          Length = 845

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 4/192 (2%)

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
           Y  +   + I + E++    I+     EL        +     A      K  SD+ +  
Sbjct: 438 YGSDDSESEISDPESKSSRKIDSDSEAELQTAQ----EIESRLAEEMEKEKRNSDNNSSD 493

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
            D+  +   +DE       +    +   N    +     R++RR+       +  H +  
Sbjct: 494 NDEQGQVQNEDEKSKIKSDTHGKRESSRNQGHSDEGSGGRQKRRKFVEEPDESGRHKSSK 553

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
               S       DS+D   +     + N  +        + D          + SSNS S
Sbjct: 554 NKADSHKGRKNSDSYDSDADTKTSDDKNQKKRRKQHGGNDDDDDDEDSDDASLRSSNSHS 613

Query: 710 DPIVKKTRWWKR 721
               +  +   R
Sbjct: 614 VRSKRTKKKRDR 625


>gi|255956119|ref|XP_002568812.1| Pc21g18180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590523|emb|CAP96715.1| Pc21g18180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 597

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 40/154 (25%), Gaps = 6/154 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E  +P +             +A    K  E V   E  +   ++  ++      +  E  
Sbjct: 146 EATAPEEQKSAAAPFQPQMDEAAQDAKKEEPVKAQEKSVSAAQTSEVDTELSTPLPVEEA 205

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               ++R+RR +    T    A   +        +    D      D             
Sbjct: 206 LEDTRKRKRRSQSPAPTLEEIANRKARAKETTPRVLLKDDEVAASRD------EGLSKLK 259

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
             E   V       P    ++S   P  +  R+ 
Sbjct: 260 SEEQKTVEDHADKQPVETQTDSHQTPTKQDARFR 293


>gi|115908476|ref|XP_784919.2| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia
            (trithorax homolog, Drosophila) [Strongylocentrotus
            purpuratus]
          Length = 5304

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 10/166 (6%)

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             I+ G             G   + PS ++      +             E ++     EE
Sbjct: 4129 QIQVGHISAREGEKPRGRGRPRKYPSVNEVSRDQIEARKRGRDSACADFEVLEKGQQEEE 4188

Query: 624  STGVIRKRRRRRRRRRPA------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
                 ++ R R   ++P       +++ +AG  S       +   S + +  P       
Sbjct: 4189 GMPKRKRGRPRLSDKQPEKDQFVDSENENAGDDSKKRMRGELTSTSDEEHHGPEQDQPRL 4248

Query: 678  LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               + A    +  +  +           + SS     + R    RK
Sbjct: 4249 RTRSSAK-RLKPGEEPVEDGEETLDSKPSVSSRS---EERQVHPRK 4290


>gi|297281681|ref|XP_001088135.2| PREDICTED: protein ELYS isoform 3 [Macaca mulatta]
          Length = 2274

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 7/182 (3%)

Query: 517  HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576
             ++   T   +   + +Q+   I+       + ++ V       +          + + N
Sbjct: 1873 SSVTKRTPRRIKRSVESQESVEII-----NDLKVSNVTSPSRMIRKLRSANLDASENIGN 1927

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                  SD Q P          +      + +  +L+  Q ++ +E     I ++R R R
Sbjct: 1928 KPDDKSSDEQLPIKRIRRVRGREVSPS-DVREDSNLDSSQLSLQAELDMSAIPRKRGRPR 1986

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
            +  P+ D      V +  S +     S       S        + G     ++  V    
Sbjct: 1987 KIHPSEDVGSK-AVKEEGSPKKKEAPSIKRRSTRSTAAKSENTDVGKPASGKSILVPNKE 2045

Query: 697  VS 698
            +S
Sbjct: 2046 LS 2047


>gi|221481412|gb|EEE19802.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1656

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 8/152 (5%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+ +  +            + +      +     +E   P     + +  +      + +
Sbjct: 535 EREAVAKDPKEGNADAIVGTDSIEARVAVSAERTEEGGKPAEAVSAADASKSAEQGRQKS 594

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               K+  RR R+R  +     G  +  ++  +    S  +  E           +    
Sbjct: 595 TKRGKKSHRRNRKRSKSKKSHTGSSAPTTAGVSAPTGSLPLSSE--------TPTSAEKE 646

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            TE    S  P  +  + S  S  D   K   
Sbjct: 647 ATEFLLSSGFPAISAVLASRGSKLDAAKKSKG 678


>gi|116253710|ref|YP_769548.1| TolA outer membrane protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258358|emb|CAK09461.1| putative TolA outer membrane protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 379

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/197 (8%), Positives = 40/197 (20%), Gaps = 17/197 (8%)

Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600
           + E    + +++V    +       +K    +            +Q      +     + 
Sbjct: 30  KVEDFEAMPVDLVPVESITQMQQGDKKAPKKETSAPVPTTRPPIAQPAENAGDNNVDLKT 89

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS-DVSSIQNV 659
             +     S S     ++          +    +   +          V S        V
Sbjct: 90  PPVPNAKPSNSEAAAANSSDKPLPKTDPKPNDVKEIVKEETEVEQPKEVASIPPPKPVEV 149

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTEN----------------YDVSIPPVSTPEME 703
                +              +  A    +N                     PP  TPE  
Sbjct: 150 TPPKPEEKPTEEQAKPEEPPKPDAEALPDNVPTPVAKPQVKPPEPQKPAEKPPEKTPEQP 209

Query: 704 SSNSSSDPIVKKTRWWK 720
            +        K  +  +
Sbjct: 210 KTADVPTDKKKADKKQE 226


>gi|6469847|gb|AAF13456.1| unknown [Streptococcus pneumoniae D39]
          Length = 701

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 15/183 (8%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + E R                   I   +     V          +A       +    
Sbjct: 320 QKEEDRRN-----YPTNTYKTLDLEI---AESDVKVKEAELELVKEEAKEPRDEEKIKQA 371

Query: 600 D-EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
             +      ++  LE+I+ +    E     +     + + +PA     A           
Sbjct: 372 KAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPATQPEKPAPK 431

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +     E +D       E      +E     +     P+ E     + P   KT W
Sbjct: 432 PEKPAEQPKAEKTD---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGW 485

Query: 719 WKR 721
            + 
Sbjct: 486 KQE 488


>gi|225469075|ref|XP_002268317.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 828

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 64/247 (25%), Gaps = 9/247 (3%)

Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVA---LSILRSVEEYLLQYTAHNIIVHTHSD 526
               + VLE  T  C +C     I+         L I R+  + + +  +    +    +
Sbjct: 132 PNADADVLEDETASCLWCWETRDIKLMPKSVRGLLKIRRTCRKKVHERISAVSAMINALE 191

Query: 527 VVLYLLNQKRATIVEYEARFGV------SINVVIGIELADKLFYIEKGSPVQALVNTGHK 580
                 N K   I   E    V       + +   ++        +     + ++    +
Sbjct: 192 KPESDQNYKYDLIKASEKLAKVLNEADIRLLIESMVQKDGADMAEKDVKREEKILIKQLE 251

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                      +    + +++           ++ + +    E      +++ R+++   
Sbjct: 252 KKKREDEKEKKRIERELQKEKLQNERELKRLQDEAEKDERRREKEESEIRKQLRKQQEEA 311

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D             Q  I     +         +N         T+          + 
Sbjct: 312 EKDQRRREKEEAELKKQLAIQKQASIMERFVKRNKNNSTSLNDQSSTKATTSDSSTNKSE 371

Query: 701 EMESSNS 707
           +M  S +
Sbjct: 372 KMPESVT 378


>gi|195113405|ref|XP_002001258.1| GI22072 [Drosophila mojavensis]
 gi|229488246|sp|B4KA44|EIF3A_DROMO RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10
 gi|193917852|gb|EDW16719.1| GI22072 [Drosophila mojavensis]
          Length = 1129

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 38/135 (28%), Gaps = 8/135 (5%)

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           D+     ++ +          +++ ++ +  E +    R  + R   R P  D  +    
Sbjct: 848 DEKRRQQYEKQRAKEEEAERKIQEDRERLAREVAVERERSEKERDVWR-PRGDRSERPSA 906

Query: 651 SDVSSIQNVID--DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
           +             + D          ++  +                   PE + ++  
Sbjct: 907 APAGGASEWRRNAPTSDRNDRNDRNERNDRSDRNDRNDRSERIERSDRNDRPERKDTDGG 966

Query: 709 SDPIVKKTRWWKRRK 723
           +D     + W  RR+
Sbjct: 967 AD-----SSWRVRRE 976


>gi|170725446|ref|YP_001759472.1| band 7 protein [Shewanella woodyi ATCC 51908]
 gi|169810793|gb|ACA85377.1| band 7 protein [Shewanella woodyi ATCC 51908]
          Length = 604

 Score = 39.6 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 46/182 (25%), Gaps = 1/182 (0%)

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           ++ +KR    + E    + I +   +E   +   IE+      L+         ++  + 
Sbjct: 217 IIEEKRKETNDIEQENRIKIEMR-NLEAEKESLDIEQAEQEAKLIQQQALDFKRAEQKAE 275

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
               +     E        E   +  +   +++      ++R+   + R           
Sbjct: 276 ILKQQEQKTREEREAEIAKERAIESAEIEKTKDIETREIEKRKAIEQSRIQQQRDIEVAE 335

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
            D         +        +       +E      T             E+  +   ++
Sbjct: 336 QDKQIAIAQKSEEESAARAKAAEAEKLKVEKLEAVITTRQVAEANRSKEIEVIDARKEAE 395

Query: 711 PI 712
             
Sbjct: 396 RE 397


>gi|55378075|ref|YP_135925.1| hypothetical protein rrnAC1281 [Haloarcula marismortui ATCC 43049]
 gi|55230800|gb|AAV46219.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 863

 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 40/178 (22%), Gaps = 5/178 (2%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
           + +++     L       ++ S   A          D  A + +     V    A     
Sbjct: 189 MPVDIEPIEILKPPEDETDEQSADPAAAGVDPLDAGDETAATDEPADAGVADAAATGEEE 248

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
              + +           T     R     R   A     A   +      +         
Sbjct: 249 PDGAPQRDDARSDESVETPPEATRDSGTDRADDAGQTRTAAESTPDRGPASSGPPGSKAA 308

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVST-----PEMESSNSSSDPIVKKTRWWK 720
                 +  +   +      E  +    P S           + + ++P  ++T   +
Sbjct: 309 GANPGRSRRSSESDEQPNVDEKPNADSRPDSRVTDRATADTDTATQTEPTERETGVRE 366


>gi|145231873|ref|XP_001399406.1| nuclear protein export protein Yrb2 [Aspergillus niger CBS 513.88]
 gi|134056314|emb|CAK37546.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +  V    K  S + AP    + +      A        S    + +   +E       
Sbjct: 37  GERPVRHKLKETSITSAPKASTDSDANMTGSAQEGSSSRASSRGRKRSFDEDEPEKNEDD 96

Query: 631 -RRRRRRRRRPATDHHDAGVVSDVS---SIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              RR+R R   ++  +A    DV      Q   + + D+ +     +   L ++ +   
Sbjct: 97  AGHRRKRSRDSNSEEENANADVDVEIPSQPQKGEEVTRDIAVPKKKRSRDQLDKDESTVG 156

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                           E S     P  K+
Sbjct: 157 ASGEKADQNAAEETSTEKSEVEGQPEKKR 185


>gi|29347005|ref|NP_810508.1| transcription termination factor Rho [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338903|gb|AAO76702.1| transcription termination factor rho [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 722

 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/149 (7%), Positives = 34/149 (22%), Gaps = 4/149 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +               + +   + +K      + +       +   ++        E   
Sbjct: 68  RSRTAAPKKEEKVAPAAKNAEVTKNKENAPAAKPQQQPKEEAANKAKEAPVAEPKAEKAA 127

Query: 627 VIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             +++  R R+        ++ +      +         +    + P+        E   
Sbjct: 128 P-KRKVGRPRKDANIAEKAENKEVENAKPIVKPTEEKAVAEKTVVAPAAEKATPTQETEK 186

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                   V+  PV     + S    D  
Sbjct: 187 KVKENKPAVAEKPVIAKPQKKSAPVIDEE 215


>gi|309366966|emb|CAP20511.2| CBR-HCP-6 protein [Caenorhabditis briggsae AF16]
          Length = 1739

 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/278 (10%), Positives = 73/278 (26%), Gaps = 26/278 (9%)

Query: 464  LLEMSRQRIR-------SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL---Q 513
            ++E +R++ R         ++E+        +     +      + I +  +E +    +
Sbjct: 1369 VVEFNRRQKRLTKTPPPPEMIETEVPEDGNVEMTSAEKGAGVGEVEIEKEADESMRTPEK 1428

Query: 514  YTAHNIIVHTHSDVVLYLLNQKRA----------TIVEYEARFGVSINVVI---GIELAD 560
                 +         L    ++++          TI +     G  I+         L D
Sbjct: 1429 KKNPLLDNLKTPATALRSRTEEQSTPNSRLLSPTTIKKIRRSVGALIHTEACLNPPNLED 1488

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                 E  S  +   N  +              +E + +DE         S+    +   
Sbjct: 1489 TQVVEEGLSTSRREKNNTNPKEKTIVEDEEPIEVEKIVEDEP--QSDSRRSVVAAAEQRA 1546

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             E    +   + ++                +        ID    ++ +P  I   +   
Sbjct: 1547 EESQKDLEEVQEQQIEDEDAVARRRSRRRKTPTYDDDESIDRDGKVWKKP-KIVAKSPEN 1605

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +  + N  +      +   E++        K+   
Sbjct: 1606 EATNISSANVTLRRSRRVSRTTEAAVVEKPKQRKRKST 1643


>gi|118389557|ref|XP_001027862.1| AT hook motif family protein [Tetrahymena thermophila]
 gi|89309632|gb|EAS07620.1| AT hook motif family protein [Tetrahymena thermophila SB210]
          Length = 1786

 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 9/163 (5%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              + +         + +  S +++IE   +        +       +    S E      
Sbjct: 1367 QDEVIEQDEEDDEQEEEDMSAEQDIEEEDKKNKKQVGRRGRKPASTKSMGSSSEKESPKT 1426

Query: 630  KRRRRRRRRRPAT-------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
             RR RR   +          +H +         +            + ++ T     E G
Sbjct: 1427 NRRGRRSASKENKISEESDEEHKETDNEDQEEELSQKKTRGRGRPKKSNEKTQSQEEEEG 1486

Query: 683  AHGFTENYDVSIPPVSTPEMESSNSSSD--PIVKKTRWWKRRK 723
                  +             ++  SS    P  KK++    +K
Sbjct: 1487 QDNSQSDEQEEEVEEEEAPRKTRGSSKKSTPAQKKSKTRSSQK 1529


>gi|10434841|dbj|BAB14396.1| unnamed protein product [Homo sapiens]
          Length = 914

 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 34/163 (20%), Gaps = 1/163 (0%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
               ++         +            +  +              P +           
Sbjct: 748 PKAEVQSKRKRTEGSSPPDSKNKGPTVKASKEKHADGATKTPAAKRPAARDRSSQPPKKT 807

Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
           S +   V   ++   +   P+    +        SI +             + +     +
Sbjct: 808 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGAGESS-SRPQK 866

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +     + P   TPE  ++        K      +R+
Sbjct: 867 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDCSHSKRR 909


>gi|238508431|ref|XP_002385409.1| RNA binding protein, putative [Aspergillus flavus NRRL3357]
 gi|317157950|ref|XP_001826678.2| nucleolar protein 12 [Aspergillus oryzae RIB40]
 gi|220688928|gb|EED45280.1| RNA binding protein, putative [Aspergillus flavus NRRL3357]
          Length = 527

 Score = 39.6 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 6/167 (3%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
             L      +EK +          +   + Q              E      +  S +  
Sbjct: 49  PSLPTTSSAVEKPAAGDDSSEDVSEPEDEDQVMQEASEASSDAGGEPAQAASEPPSRKRK 108

Query: 616 QDNIVSEEST-----GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
           +      E +         ++  ++RR   A      G   D ++  +  DD  +     
Sbjct: 109 RAAGEDLEESYMRRIAKEEQKEEQKRRAEKAKRQKGEGEEEDEATSTDKSDDENEDESSD 168

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-SDPIVKKT 716
            D            G  ++ D+     +      SN +      KKT
Sbjct: 169 EDEEVAIPKHETVTGDAQSSDIDKSNRTVFLSNVSNEAIKSKSAKKT 215


>gi|307105850|gb|EFN54098.1| hypothetical protein CHLNCDRAFT_136232 [Chlorella variabilis]
          Length = 815

 Score = 39.2 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 37/148 (25%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
           +      +                             +         +S+G  +++++  
Sbjct: 45  SPPASKPAAKAGKGSRAAAAAPPAKLPAAKQRGQPVKQPAMAAAKPVKSSGAKQRQQQEA 104

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
                A     +    D +  Q     S     E          + G     +    +  
Sbjct: 105 SLAAAAARRLASKRGKDAAEPQKAGIRSGGKPAEQQKRQQAAGKKAGGGARDKAGWAAPQ 164

Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             S+ E  +S+ S D   ++ R   +R+
Sbjct: 165 AASSDEETTSSGSKDEEPQQQRPGPKRQ 192


>gi|302410339|ref|XP_003003003.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261358027|gb|EEY20455.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 628

 Score = 39.2 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 37/153 (24%), Gaps = 3/153 (1%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            +           S   S    +  +   +   P       + I       +     +KR
Sbjct: 94  NSPSPNQTPTDISSSHDSKKPKMASIAPGKTATPTSAPSKRKRITPAEKKAQEDEKEKKR 153

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             R  +RR   +   A   ++    +   D       E +        +        N  
Sbjct: 154 IEREAKRRDI-EEKKAKADAEKEEKKKDRDAKRHKKEEEARKVEEEKAKKARAQPKLNMF 212

Query: 692 VSIPPVSTPEMESSNSSSDP--IVKKTRWWKRR 722
              P     E  +S ++  P    K+      R
Sbjct: 213 FKTPATPKTESPASETAVKPAVEPKEDGAESPR 245


>gi|297259919|ref|XP_002798212.1| PREDICTED: PHD finger protein 20-like [Macaca mulatta]
          Length = 925

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/209 (8%), Positives = 58/209 (27%), Gaps = 8/209 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENY 690
           S            + N  +  +  ++EN 
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENT 319


>gi|15904036|ref|NP_359586.1| choline binding protein A [Streptococcus pneumoniae R6]
 gi|116515359|ref|YP_817402.1| choline binding protein A [Streptococcus pneumoniae D39]
 gi|8163644|gb|AAF73779.1|AF154012_1 surface protein PspC [Streptococcus pneumoniae D39]
 gi|15459699|gb|AAL00797.1| Choline binding protein A [Streptococcus pneumoniae R6]
 gi|116075935|gb|ABJ53655.1| choline binding protein A [Streptococcus pneumoniae D39]
          Length = 701

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 15/183 (8%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + E R                   I   +     V          +A       +    
Sbjct: 320 QKEEDRRN-----YPTNTYKTLDLEI---AESDVKVKEAELELVKEEAKEPRDEEKIKQA 371

Query: 600 D-EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
             +      ++  LE+I+ +    E     +     + + +PA     A           
Sbjct: 372 KAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPATQPEKPAPK 431

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +     E +D       E      +E     +     P+ E     + P   KT W
Sbjct: 432 PEKPAEQPKAEKTD---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGW 485

Query: 719 WKR 721
            + 
Sbjct: 486 KQE 488


>gi|268560300|ref|XP_002646178.1| C. briggsae CBR-HCP-6 protein [Caenorhabditis briggsae]
          Length = 1714

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/278 (10%), Positives = 73/278 (26%), Gaps = 26/278 (9%)

Query: 464  LLEMSRQRIR-------SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL---Q 513
            ++E +R++ R         ++E+        +     +      + I +  +E +    +
Sbjct: 1344 VVEFNRRQKRLTKTPPPPEMIETEVPEDGNVEMTSAEKGAGVGEVEIEKEADESMRTPEK 1403

Query: 514  YTAHNIIVHTHSDVVLYLLNQKRA----------TIVEYEARFGVSINVVI---GIELAD 560
                 +         L    ++++          TI +     G  I+         L D
Sbjct: 1404 KKNPLLDNLKTPATALRSRTEEQSTPNSRLLSPTTIKKIRRSVGALIHTEACLNPPNLED 1463

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                 E  S  +   N  +              +E + +DE         S+    +   
Sbjct: 1464 TQVVEEGLSTSRREKNNTNPKEKTIVEDEEPIEVEKIVEDEP--QSDSRRSVVAAAEQRA 1521

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             E    +   + ++                +        ID    ++ +P  I   +   
Sbjct: 1522 EESQKDLEEVQEQQIEDEDAVARRRSRRRKTPTYDDDESIDRDGKVWKKP-KIVAKSPEN 1580

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +  + N  +      +   E++        K+   
Sbjct: 1581 EATNISSANVTLRRSRRVSRTTEAAVVEKPKQRKRKST 1618


>gi|328766214|gb|EGF76270.1| hypothetical protein BATDEDRAFT_92860 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 666

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 28/124 (22%), Gaps = 4/124 (3%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
               V  G      S  P   ++   V + E     P ++  E         E+  + ++
Sbjct: 390 DDKGVEGGKTSRGRSPLPDQVRSNTAVKEKEEDRSQPVTKGPE----TKQPRETDRLEQR 445

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             +R R      D        D    ++            S                   
Sbjct: 446 EGKRSRTHSEDNDRLSRKRSPDGRKKEDRGSGRESRREGASKDVESQKDSKEEQRSDRGR 505

Query: 691 DVSI 694
           D S 
Sbjct: 506 DYSR 509


>gi|308062330|gb|ADO04218.1| 30S ribosomal protein S1 [Helicobacter pylori Cuz20]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|294788741|ref|ZP_06753982.1| translation initiation factor IF-2 [Simonsiella muelleri ATCC
           29453]
 gi|294483223|gb|EFG30909.1| translation initiation factor IF-2 [Simonsiella muelleri ATCC
           29453]
          Length = 950

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 36/171 (21%), Gaps = 4/171 (2%)

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
           ++             EK        +   K              +   ++      P+  
Sbjct: 119 SLKTENTPNSSSIETEKSEKKSDKSHQSEKSNKPEGESKEKSKRKRGGKNRQKEKEPEPL 178

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ----NVIDDSFDM 666
                  N           ++ RRRR  +              +  +      I+D+   
Sbjct: 179 PTPVEVVNAEEAARRAQEEEQDRRRREYQEKLQREKEERAERQARREAAKLQAIEDAKTA 238

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                D               ++   +     T + + +  +     K + 
Sbjct: 239 AQAKKDAQRTAKPSEEKRAKKDDETKNQKSNKTDKSDKNIKTKTDKPKSSG 289


>gi|189239180|ref|XP_001807607.1| PREDICTED: similar to CG6599 CG6599-PA, partial [Tribolium
           castaneum]
          Length = 1334

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 85/286 (29%), Gaps = 14/286 (4%)

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           VE  + E  K+D  + +   +S   ++E   + +++S LE         +    +++  +
Sbjct: 582 VEAAVHEPPKQDVEKSEADKVSQTDIVEKESKIVQTSELEKDQVEENVQE----VKAAET 637

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
               I+  VE    +     +      +     ++ ++    + + +   ++      + 
Sbjct: 638 QVREIVEKVELKKNEKVIEQLQEKITDESKEKGVSVEKE--KDLDKKSDETV-----DQT 690

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             +   +E+      L         +    +         Q   ++   +    +   + 
Sbjct: 691 TKEEKSVEESKDENDLKEVETTQEFEIVDENEKGGKVVTEQKLEIVEEKEKSLEKPEDEE 750

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
               E      K      +    T+H       +  +I +  ++  +   +         
Sbjct: 751 KQVIEEKSSEEKNVEGESKNAEETEH--VTQKKEDETIVSKKEEFEEKTDKEERSNAAET 808

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW-WKRRK 723
           L++   G  E+           + ++          K R   K+R+
Sbjct: 809 LDDKPPGNGEDVSAKSETEKNLDEKAKEKKLKKQKMKKRSERKKRQ 854


>gi|114107784|gb|AAI23287.1| LOC733425 protein [Xenopus laevis]
          Length = 479

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +          +  SDS+  +  K      +DEA      S+S ++    + + +S  
Sbjct: 246 RAASDSEDEAPAKRADSDSEDEAPAKRAASDSEDEAPPKRAASDSEDEAPPKLAASDSED 305

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +R        A     A    D +  +    DS D        ++           
Sbjct: 306 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKGAASDSEDEAPPKRKV 365

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           + + D +    +    +   SS D    K
Sbjct: 366 SSSEDDAPSKQAASTSKEKKSSEDKTRGK 394



 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 43/146 (29%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +          +  SDS+  +  K      +DEA      S+S ++      + +S  
Sbjct: 220 RVASDSEDEAQAKRAASDSEDEAPAKRAASDSEDEAPAKRADSDSEDEAPAKRAASDSED 279

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               +R        A     A    D +  +    DS D        ++           
Sbjct: 280 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAA 339

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712
           +++ D + P  +  + E        +
Sbjct: 340 SDSEDEAPPKGAASDSEDEAPPKRKV 365


>gi|317177805|dbj|BAJ55594.1| 30S ribosomal protein S1 [Helicobacter pylori F16]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLADFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|325120556|emb|CBZ56110.1| putative PAN domain-containing protein [Neospora caninum Liverpool]
          Length = 3397

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 60/257 (23%), Gaps = 10/257 (3%)

Query: 466 EMSRQRIRSSVLES-TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT- 523
           +  R+  R S+ +   T       G G I+ +S+      R                   
Sbjct: 202 QSKRREGRKSLPKREKTGDGPSVSGEGGIKEESNEVKK--REERRKSRSKREKAHDGTMV 259

Query: 524 -----HSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNT 577
                  +V      + R ++ + E    G S++   G E                    
Sbjct: 260 SEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESNEEKKRGDRRKSRSKRE 319

Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
               G+        + ++   + E    +PK E   D         +       ++R  R
Sbjct: 320 KAHDGTRESEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESNAGKKRGDR 379

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
           R+  +    A   + V       +       E                 +          
Sbjct: 380 RKSRSKRETAHDGTRVLEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESN 439

Query: 698 STPEMESSNSSSDPIVK 714
              + E    S     K
Sbjct: 440 EVKKREERRQSRSKREK 456



 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 47/210 (22%), Gaps = 1/210 (0%)

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFY 564
             +                 +V      + R ++ + E    G S++   G E       
Sbjct: 315 RSKREKAHDGTRESEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESNAGK 374

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
                            G+        + ++   + E    +PK E   D         +
Sbjct: 375 KRGDRRKSRSKRETAHDGTRVLEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGN 434

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                + ++R  RR+  +    A   + VS      +       E               
Sbjct: 435 EEESNEVKKREERRQSRSKREKAHDGTMVSEEFEGEEVKASKRREGRKSLPKREKTGDGP 494

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             +             + E    S     K
Sbjct: 495 SVSGEGGNEEESNEVKKREERRKSRSKREK 524



 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 2/153 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + S  +        + S+       K  +     ++L    K+     +     +EE + 
Sbjct: 448 RQSRSKREKAHDGTMVSEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESN 507

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
            ++KR  RR+ R      HD   VS+    + V   +         +       +G    
Sbjct: 508 EVKKREERRKSRSKREKAHDGTRVSEEFEGEAV--KASKRREGRKSLPKREKTGDGPSVS 565

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            E              E   S S          
Sbjct: 566 GEGGIKEESNEVKKRGERGKSRSKREKAHDGTR 598


>gi|255586113|ref|XP_002533720.1| conserved hypothetical protein [Ricinus communis]
 gi|223526375|gb|EEF28665.1| conserved hypothetical protein [Ricinus communis]
          Length = 883

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 6/135 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS--EES 624
           +    +       K   + +     + +  + ++   L   K E+ +D   +  S  +E 
Sbjct: 261 RRKAEEKRQARLEKELLEEEERKQREEVARLVEERRRLRDEKLEAEKDQSKSSPSTTQEK 320

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                  ++R+ RR+      D G     S  + +   S        D       +   H
Sbjct: 321 DSKKEAEKKRQERRKEK----DKGSSKSNSDAEELEKKSSKDSERKRDFDKKGETDRREH 376

Query: 685 GFTENYDVSIPPVST 699
             +    V +    +
Sbjct: 377 QKSGTECVKVQTSES 391


>gi|115712770|ref|XP_781572.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115975847|ref|XP_001183206.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1673

 Score = 39.2 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 3/137 (2%)

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
                     +   E V + +   P  + E   + +        TG  R+ + +  +   
Sbjct: 593 AKESKSDDDTEPENEPVEEAKGDSPSVQQERKRNGKKGGKRRGKTGDRRRGKAKESKSDD 652

Query: 641 ATDHHDA---GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
            T+  +        D  S+Q     +     +    T+            ++ +    PV
Sbjct: 653 DTEPENEPVEEAKGDSPSVQQERKRNGKKGGKRRGKTDDRRRGKAKESSDDDTEPENEPV 712

Query: 698 STPEMESSNSSSDPIVK 714
              + +S     +   K
Sbjct: 713 EEAKGDSPGIQQERKRK 729


>gi|300175972|emb|CBK22189.2| unnamed protein product [Blastocystis hominis]
          Length = 600

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 3/163 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +++            +     +     K  E V + +      K  + E  + +     
Sbjct: 331 SVKRKKSESERRKKSARERKKKRESVRRKKSESVKKRKRESVKRKKSASERRKKSARERR 390

Query: 624 STGVIRKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                 ++R+R   RR++  +     +  V    S       S       +        E
Sbjct: 391 KKSESVRKRKRESVRRKKSESVKKRKSASVKRKKSASERRKKSARERKRKNVRERKRKRE 450

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +     +E+       V   +  +         +K +  + RK
Sbjct: 451 SVRRKKSESVKRKRESVKKRKSANVKKRKSANERKRKNVRERK 493


>gi|331236738|ref|XP_003331027.1| Uhrf1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310017|gb|EFP86608.1| Uhrf1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 3/130 (2%)

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
               +    +      +  D +D    E S     K+RR+  RR         G      
Sbjct: 7   APTKESYEEIRQRNIAASNDDRDERTDENSKTRAEKKRRKSTRREAEQAAEGEGDEKPQE 66

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS---SSDP 711
              +         ++         +E+     +E  +        P+   S+    S + 
Sbjct: 67  EAGSRRRSGRIQKLQARKQNKLAGVEDERSEGSEESEDEYDDQDGPDGGDSSDGSESKEI 126

Query: 712 IVKKTRWWKR 721
             K+   WK 
Sbjct: 127 SRKRKSTWKP 136


>gi|221488723|gb|EEE26937.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2685

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 65/262 (24%), Gaps = 33/262 (12%)

Query: 433  KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
            +++ + VE         DR +         G  E +RQ    +  E + +        G+
Sbjct: 2274 EEHRQRVES----ERPSDRRQ---------GAREETRQ--GEAREERSDREQIEAVRRGW 2318

Query: 493  IRSQSSVALSILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
             R ++       R   E       +  +      +      + +       E R   + +
Sbjct: 2319 RREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEE------DSEDELCARLERRQRTTDS 2372

Query: 552  VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
                     +        P            +       +          +      +++
Sbjct: 2373 SKSDEMATHEEIR----RPGTRREAHEKAAFTGQNNARQNNAYPEAKIFSSDEEEHWTKA 2428

Query: 612  LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYMEP 670
             +      V++     +       RRR+P                 +N  D++ +   + 
Sbjct: 2429 PKATAAREVTDLGETNLP------RRRKPEARKEKTTRSKKTRKTRKNQEDETTETDNKD 2482

Query: 671  SDITNHNLLENGAHGFTENYDV 692
             +  + +  +  +       D 
Sbjct: 2483 ENNKDEDSKDEDSEDEKPRSDE 2504



 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 39/145 (26%), Gaps = 3/145 (2%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                      V +  +  + +++ + V  +        +   E+ +     EE +   + 
Sbjct: 2254 GDERKERSLHVHNQEEGRTREEHRQRVESERPSDRRQGA--REETRQGEAREERSDREQI 2311

Query: 631  RRRRRR-RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
               RR  RR  A    +       ++  +          E  D  +           T +
Sbjct: 2312 EAVRRGWRREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTD 2371

Query: 690  YDVSIPPVSTPEMESSNSSSDPIVK 714
               S    +  E+    +  +   K
Sbjct: 2372 SSKSDEMATHEEIRRPGTRREAHEK 2396



 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 42/153 (27%), Gaps = 7/153 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            E   P +             ++    K   E   +DE    + + +   D   +      
Sbjct: 2322 EAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTDSSKSDEMATH 2381

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
              + R   RR            A    + +   N   ++     +  +          A 
Sbjct: 2382 EEIRRPGTRRE------AHEKAAFTGQNNARQNNAYPEAKIFSSDEEEHWTKAPKATAAR 2435

Query: 685  GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              T+  + ++P    PE     ++     +KTR
Sbjct: 2436 EVTDLGETNLPRRRKPEARKEKTTRSKKTRKTR 2468


>gi|169863827|ref|XP_001838531.1| hypothetical protein CC1G_10773 [Coprinopsis cinerea okayama7#130]
 gi|116500437|gb|EAU83332.1| hypothetical protein CC1G_10773 [Coprinopsis cinerea okayama7#130]
          Length = 816

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 2/146 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEESTG 626
                   +     S   A         V +  +     ++   +++ +  +    ES  
Sbjct: 654 RQSSKKRASKKGSNSKESADGRASGESAVDEKVSSFKGVRTRKQKEMAERGLTLPPESAS 713

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
            I ++R+RR     A +  D          Q   D         +D         G    
Sbjct: 714 QIGRKRKRRGTTSEAPEKRDRRPKRAKEIQQEPTDRGKRATSGGTDRPREVQKAQGEANT 773

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712
                  +PP +  +     +S  P 
Sbjct: 774 VGGKKTKVPPATPIKRSQRLASQTPQ 799


>gi|315048227|ref|XP_003173488.1| SAP domain-containing protein [Arthroderma gypseum CBS 118893]
 gi|311341455|gb|EFR00658.1| SAP domain-containing protein [Arthroderma gypseum CBS 118893]
          Length = 669

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 7/156 (4%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I     V A       +    +    +   E   +        +S +     D    +E
Sbjct: 167 DITPAQAVPAPAPAPEPIQEPVKESVQEPVQEPTQEPTQQPVQDESANKSSSADVEAIKE 226

Query: 624 STGVIRKRRRRRRRRRPATD-------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
            T   RKR+RR +   P+           +          + +  +   +  + +  T  
Sbjct: 227 DTDESRKRKRRSQTPPPSPRSIALKKARIEVEQQQSWPPQEEIKTEGHKLNEDEAPATAP 286

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
              E  A         S PP   P+ E+  + +   
Sbjct: 287 VTAEPPAQDTDVEMKESTPPAPEPKRETEENEAKEQ 322


>gi|257051458|ref|YP_003129291.1| chromosome segregation protein [Halorhabdus utahensis DSM 12940]
 gi|256690221|gb|ACV10558.1| SMC domain protein [Halorhabdus utahensis DSM 12940]
          Length = 890

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 59/188 (31%), Gaps = 2/188 (1%)

Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
            +L  KR ++ + E++    +   +  +L      +          +   +   ++   +
Sbjct: 180 RVLEGKRESLSQLESQIEAKVEKELHEQLNAAESELATVREELERYDEQRETARETLDAA 239

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                E   + E L  I    +           E   +  +   RR RR   +D  ++G+
Sbjct: 240 NSILEEYEQRREELDEIESEIAELTETIEATEREREELADEISDRRDRREEISDRIESGL 299

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
            +   S +   +   D+  +     +    E   H    +         +   +++++  
Sbjct: 300 DTAELSAEADREAVEDLVDDLDRRDDEIRDEIEQHRL--DLQRHRENAESEREDATDAEE 357

Query: 710 DPIVKKTR 717
               K+ R
Sbjct: 358 RAAEKRDR 365


>gi|208965570|dbj|BAG72799.1| splicing factor, arginine/serine-rich 2, interacting protein
           [synthetic construct]
          Length = 1463

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 40/184 (21%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S               +E+           +            +K+R  
Sbjct: 853 KDIARERRQSQSRSPKRYTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910

Query: 720 KRRK 723
            R +
Sbjct: 911 SRER 914


>gi|42560747|ref|NP_975198.1| hypothetical protein MSC_0195 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492243|emb|CAE76840.1| Hypothetical protein MSC_0195 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
          Length = 384

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 5/163 (3%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           + I   +  +    TG       +  + ++ I+    DE   P P          ++ +E
Sbjct: 143 YEIIITAKNENKHFTGSTNIFFIEDSTINEKIKPELPDEDKSPEPGYNEFSPNDSDLSTE 202

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +S         +    RP  +  D    +  +   +  + + D     S+ TN +   N 
Sbjct: 203 DSNNRNNGENPQGDENRPGNNSGDNSSRNPNNRTPDS-NSNRDGSSSNSNGTNDSRPNNE 261

Query: 683 AHGFTENYDVSIPPVS----TPEMESSNSSSDPIVKKTRWWKR 721
               +   + S          P    + S ++      +WW++
Sbjct: 262 NETSSNPTNPSNEDQPGDYLNPYKPGNGSPNNGTNTDDKWWEK 304


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             F +           T  K   D  +     + +    DE  +P   S           S
Sbjct: 1307 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1361

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             + +    K ++       A D    G V   SS              P    N  + + 
Sbjct: 1362 PKLSNKELKPQKSVVSDLEADDV--KGSVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723
             A   +          + P+    +       S  P   KT+  ++RK
Sbjct: 1420 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1467


>gi|308499224|ref|XP_003111798.1| hypothetical protein CRE_03167 [Caenorhabditis remanei]
 gi|308239707|gb|EFO83659.1| hypothetical protein CRE_03167 [Caenorhabditis remanei]
          Length = 540

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 48/187 (25%), Gaps = 5/187 (2%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
           L +K+  +   + ++     V+                  ++       V    Q     
Sbjct: 306 LRKKKEEMDPIKKKYLKKPRVIEKP----MDEKATLTMFEESFRPNAKDVPGGEQHIVKP 361

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR-PATDHHDAGVV 650
                     A +     +      +    +++ G  +KR   RR++     D       
Sbjct: 362 LIKLPWGSVGADIVATMKDDHIGDTEEDRKKDNDGEEKKRESERRKKDGEKNDDKKKDAR 421

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
           S     + +           S   N +   +     T+               ++N++SD
Sbjct: 422 SKSKKEKKLDKSKESKDPRESKRRNTDRETHAHGNRTDAKPKETKDAEQKTNRNNNNNSD 481

Query: 711 PIVKKTR 717
              K  +
Sbjct: 482 TPKKNKK 488


>gi|297380231|gb|ADI35118.1| ribosomal protein S1 [Helicobacter pylori v225d]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|261838388|gb|ACX98154.1| 30S ribosomal protein S1 [Helicobacter pylori 51]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINTDGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|327264621|ref|XP_003217111.1| PREDICTED: a-kinase anchor protein 8-like [Anolis carolinensis]
          Length = 708

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 62/214 (28%), Gaps = 15/214 (7%)

Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
           C  C     I +Q  +    LRSV+    +  A      T   V   +LN K   IV+  
Sbjct: 500 CIACDM--LIPAQPHLLQRHLRSVDHNRNRRMAAEHFKKTSFHVAKSVLNSK--HIVKML 555

Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
            ++    +      +      +++   V+     G +  +           E     + +
Sbjct: 556 EKYLKGDDPFTDENIDQD---VDESEAVERADREGTQENTAI--------EEKQNAGDEV 604

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
            P    E+ +   D      +     +    +++    T           SS     + +
Sbjct: 605 KPSEAGETAKPEGDETAFPPADFSKGESAENQQQAEERTVAVGIVEELPFSSQGGSEERA 664

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
            ++  E                 TE+ D+   PV
Sbjct: 665 AEIQRERQQHMEPAEENLSEMRTTESKDIKEEPV 698


>gi|225849605|ref|YP_002729839.1| ribosomal protein S01 [Persephonella marina EX-H1]
 gi|225646411|gb|ACO04597.1| ribosomal protein S01 [Persephonella marina EX-H1]
          Length = 550

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 21  RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80
           RDN  EE        K   G++  AKV ++    + AFVD   +  GF+P  EI  +  +
Sbjct: 427 RDNPWEEFF-----SKHSVGDVIKAKVKKLID--RGAFVDINEDVEGFIPLSEISKEKIE 479

Query: 81  IPFSDRQALLKESNI 95
           IP SD+ +L +E   
Sbjct: 480 IP-SDKLSLGQEIEA 493


>gi|158294073|ref|XP_315382.4| AGAP005374-PA [Anopheles gambiae str. PEST]
 gi|157015395|gb|EAA11000.4| AGAP005374-PA [Anopheles gambiae str. PEST]
          Length = 1410

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 70/272 (25%), Gaps = 28/272 (10%)

Query: 469  RQRIRSSVLESTT---------------KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513
            R+R    + E  T                V      +  + S+S        S       
Sbjct: 759  RKRHSVEMSEFLTPEHPGVYLPKVECIRSVSDRIATSSSLASKSKPTYHFNDSSSSSSED 818

Query: 514  YTAHNIIVHTHSDVVLYLLNQK---RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
             +  N+   T+  VVL    +K      + + E R    + +    +        E G  
Sbjct: 819  ESVRNVFKKTNVSVVLEKELEKVRVDGVLKKQEKRTARQLQIRSDDD------QSETGES 872

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                  +  K       P   K+      ++A     + +S          +E+    + 
Sbjct: 873  KAGGDRSDKKPALRDAEPLERKSSRRREMEKAKSSEVEKKSSRTAGKREEEKEAKAKGKD 932

Query: 631  ----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                 R    RR            +      +  ++  D Y +   ++     +      
Sbjct: 933  AESAERTSSSRRSEMDQDKGVEGETKYKRTTDRKEEKQDRYKKSEKLSTILENDRRERRP 992

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
             +  ++   P S    E     SD   K  R 
Sbjct: 993  EKEKELKEKPSSRRREEEKEKDSDIAKKAKRT 1024



 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 1/152 (0%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            EK +  +       +  S S+    D++     + +      + E  +D +     + ST
Sbjct: 923  EKEAKAKGKDAESAERTSSSRRSEMDQDKGVEGETKYKRTTDRKEEKQD-RYKKSEKLST 981

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             +   RR RR  +        +    +    ++            +D   H      +  
Sbjct: 982  ILENDRRERRPEKEKELKEKPSSRRREEEKEKDSDIAKKAKRTTTTDKKEHKDDNKKSRQ 1041

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +  + S    S    + S+     + K+ R
Sbjct: 1042 SEKLGERSDTRASAERAKPSDDDRVRVSKRIR 1073


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             F +           T  K   D  +     + +    DE  +P   S           S
Sbjct: 1307 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1361

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             + +    K ++       A D    G V   SS              P    N  + + 
Sbjct: 1362 PKLSNKELKPQKSVVSDLEADDV--KGSVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723
             A   +          + P+    +       S  P   KT+  ++RK
Sbjct: 1420 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1467


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             F +           T  K   D  +     + +    DE  +P   S           S
Sbjct: 1307 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1361

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             + +    K ++       A D    G V   SS              P    N  + + 
Sbjct: 1362 PKLSNKELKPQKSVVSDLEADDV--KGSVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723
             A   +          + P+    +       S  P   KT+  ++RK
Sbjct: 1420 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1467


>gi|313225240|emb|CBY06714.1| unnamed protein product [Oikopleura dioica]
          Length = 944

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 9/175 (5%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E E + G S+ +      +++   +E+    Q   +         +             
Sbjct: 215 EETEDKSGASVKITPDETASEEDETMEQSDQRQTRASETGPSAESEEEQESAPAHAKEDA 274

Query: 600 DEALLPIPKS---------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           D A    P S         +  E  Q+    E+          +  R  PA +       
Sbjct: 275 DPATDATPASTQVTELDQEDKSEPKQEQFPEEDQEAKQVTESEQEERSEPAPEQEIKSEQ 334

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
               + ++  +   ++ +EP+  T     +N      ++ +     +  PE E++
Sbjct: 335 EIDLASKSEPEIDTEISVEPATETAPEPEKNVEPVLNKSAESETKILMEPETEAA 389


>gi|308458792|ref|XP_003091728.1| hypothetical protein CRE_14343 [Caenorhabditis remanei]
 gi|308255319|gb|EFO99271.1| hypothetical protein CRE_14343 [Caenorhabditis remanei]
          Length = 591

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 13/167 (7%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P +          S+ +  + +         + +       + +   +        G  
Sbjct: 156 EPGERETEEPECQDSEIRILTVEPQNSDTDLVKKVTTPVTVTTDDKSDEKRKKATKEGSK 215

Query: 629 RKRRRR----RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT---------N 675
           R RR+R    +   R +       +  +    + + + S +    P   T          
Sbjct: 216 RARRKRVIKQKGSGRNSGRKQQLQLSDERRRRKKLNNGSKESLASPRASTYVPLKLDKSA 275

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            N++  G     ++  +  P V         S    I  KT+ W R+
Sbjct: 276 ENVVRKGRASNKQSDSMGPPSVDKRNPAKKKSFFKNIFDKTKSWMRK 322


>gi|308063837|gb|ADO05724.1| 30S ribosomal protein S1 [Helicobacter pylori Sat464]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|261201764|ref|XP_002628096.1| rRNA maturation protein [Ajellomyces dermatitidis SLH14081]
 gi|239590193|gb|EEQ72774.1| rRNA maturation protein [Ajellomyces dermatitidis SLH14081]
          Length = 904

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 9/186 (4%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIE 566
             +      +   V   L  Q+R    + E + R  V I +          +  +    E
Sbjct: 73  SRSDQDAPRSRPGVTKSLGEQRRKETLLKEMQRRSKVGILLDRRFGENDPTMTPEERAAE 132

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +           + +        +                    +D+  +    ES  
Sbjct: 133 RFARESQKKLKKESMFNLEDDEEEMQLTHLGQTITFDKENKDDFEEDDLNASDEDGESEK 192

Query: 627 VIRKRRRRRRRRRP--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
             ++RR          A D  + G      S   V+ +                 ++   
Sbjct: 193 ARKRRRNAEEDDMEGLAGDSEEEGQPERKKSKNEVMKELIAKSKFHKYERQKAKEDDDDL 252

Query: 685 GFTENY 690
             + + 
Sbjct: 253 RASLDK 258


>gi|308489229|ref|XP_003106808.1| hypothetical protein CRE_16642 [Caenorhabditis remanei]
 gi|308253462|gb|EFO97414.1| hypothetical protein CRE_16642 [Caenorhabditis remanei]
          Length = 961

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 67/237 (28%), Gaps = 6/237 (2%)

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
            +   + +  T  C      G   + +  +    +++ +            +T +     
Sbjct: 633 HMEIEIDDLLTTECKVNSKRGSQPNATKNSSHKQKAIAQKSHTKQQKVASTYTGN--ANT 690

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           +  QK   +V     F VS           +    EK +  +A      +  ++ +  + 
Sbjct: 691 IHAQKGNVLVSP-DSFSVSAKQNTSAMKTREEIAAEKKAKQEAEKRLAQQRKAEKERQAK 749

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
               +   ++E      ++E+ E  +    ++ +    ++ +  +  +  A         
Sbjct: 750 LLKEKKKSEEEKRRLEKEAEN-EKRKAEKAAKLAEERAQREKEAQEYKEKAKQMEKEMAE 808

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA--HGFTENYDVSIPPVSTPEMESS 705
                 Q  I+         +        E  A         D  IPP+  P  E  
Sbjct: 809 EKERKRQQRIEAKELKNARKAAQKAKEEEETKAWMEASKTFNDKYIPPLPKPRKEEE 865


>gi|239611906|gb|EEQ88893.1| rRNA maturation protein [Ajellomyces dermatitidis ER-3]
          Length = 904

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 9/186 (4%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIE 566
             +      +   V   L  Q+R    + E + R  V I +          +  +    E
Sbjct: 73  SRSDQDAPRSRPGVTKSLGEQRRKETLLKEMQRRSKVGILLDRRFGENDPTMTPEERAAE 132

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +           + +        +                    +D+  +    ES  
Sbjct: 133 RFARESQKKLKKESMFNLEDDEEEMQLTHLGQTITFDKENKDDFEEDDLNASDEDGESEK 192

Query: 627 VIRKRRRRRRRRRP--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
             ++RR          A D  + G      S   V+ +                 ++   
Sbjct: 193 ARKRRRNAEEDDMEGLAGDSEEEGQPERKKSKNEVMKELIAKSKFHKYERQKAKEDDDDL 252

Query: 685 GFTENY 690
             + + 
Sbjct: 253 RASLDK 258


>gi|311274876|ref|XP_003134493.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like [Sus
           scrofa]
          Length = 1580

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 25/127 (19%), Gaps = 3/127 (2%)

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
             S        K  +     E       S+  E                ++ +  RR + 
Sbjct: 83  EDSGGGGTGVKKKRKKKDPGEQEGAAKGSKDREPKPKRKREPREP-KEPRKAKEPRRPKE 141

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             +      +                  E    T+  +         E     +      
Sbjct: 142 PKEPKQKDGIKKARKP--REASGPKEAKEKRSSTDSAVRTKSRKASKEQGPTPVEKKKKG 199

Query: 701 EMESSNS 707
           + +S  +
Sbjct: 200 KRKSETT 206


>gi|308183158|ref|YP_003927285.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
 gi|308065343|gb|ADO07235.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|217034328|ref|ZP_03439744.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10]
 gi|216943213|gb|EEC22680.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|195135387|ref|XP_002012114.1| GI16794 [Drosophila mojavensis]
 gi|193918378|gb|EDW17245.1| GI16794 [Drosophila mojavensis]
          Length = 1128

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/156 (7%), Positives = 32/156 (20%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                       K   +  +    +               +  +    +    S++  G 
Sbjct: 365 VRGRSTERRKDKKSRRNDSSTDSRREKRDKSTRTPPRRETEKPTRSKERQRERSKQRLGS 424

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             ++R +  RR       +     +    ++          +    +             
Sbjct: 425 RERQRSKDARRNERHRSKERQRSKERLKSKDRARSMERHKSKERQQSKERQRPKERQRSK 484

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           E         S   + S          +++   R K
Sbjct: 485 ERQRSKERQRSKERLRSKERVRSKERLRSKERARSK 520



 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 34/137 (24%), Gaps = 2/137 (1%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           +    S   S   N       ++      +E  ++              R++ ++ RR  
Sbjct: 325 QRARASSTDSARSNSPERKDKKSSKSRAAAE--DNDTPAENPVRGRSTERRKDKKSRRND 382

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
            +TD           +      +      E     +   L +     +++   +    S 
Sbjct: 383 SSTDSRREKRDKSTRTPPRRETEKPTRSKERQRERSKQRLGSRERQRSKDARRNERHRSK 442

Query: 700 PEMESSNSSSDPIVKKT 716
               S          ++
Sbjct: 443 ERQRSKERLKSKDRARS 459


>gi|188527836|ref|YP_001910523.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470]
 gi|188144076|gb|ACD48493.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|83288394|sp|Q9JM99|PRG4_MOUSE RecName: Full=Proteoglycan 4; AltName: Full=Lubricin; AltName:
           Full=Megakaryocyte-stimulating factor; AltName:
           Full=Superficial zone proteoglycan; Contains: RecName:
           Full=Proteoglycan 4 C-terminal part; Flags: Precursor
          Length = 1054

 Score = 39.2 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 4/120 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL----EDIQDNIVSEES 624
            P                 P+  K  E     E     PK        E         E 
Sbjct: 540 EPEPTTPKKPEPTTPKEPVPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEP 599

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
           T          ++  P T       +   +    V   + ++  +P + T  +   + + 
Sbjct: 600 TTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSK 659


>gi|326427171|gb|EGD72741.1| hypothetical protein PTSG_04470 [Salpingoeca sp. ATCC 50818]
          Length = 859

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 10/115 (8%)

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME--------- 669
              +       K+ +R R R+   +  +          +    +  +   +         
Sbjct: 679 KREQRERKRQEKKEQRERERQEKKEQRERERQEKKEQREQRQRELQEKREQQLRKRCARA 738

Query: 670 -PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                       +  H   E  +  I  V+   ++    + D       W+ R +
Sbjct: 739 RAKRERQEARERSKRHKQEERENRRIELVALRRIQRRVRTQDGDTGTVVWFTRAR 793


>gi|89897629|ref|YP_521116.1| hypothetical protein DSY4883 [Desulfitobacterium hafniense Y51]
 gi|89337077|dbj|BAE86672.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 445

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/197 (9%), Positives = 54/197 (27%), Gaps = 13/197 (6%)

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIE----KGSPVQALVNTGHKVGSDSQAPSY 590
           +   +   E R  +     I  ++      IE    K +  +A         S       
Sbjct: 229 EPKDLKAKEERTRLLETPEIQEQMRKDKLIIEAMSNKTNQGEAKDKKEGYGKSKWYNLDR 288

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIV---------SEESTGVIRKRRRRRRRRRPA 641
           +KN +   +++    I   +  +D   +           +        + + + + R   
Sbjct: 289 EKNNQKNTKEQPRNGISNPKPSQDSNKSSTKDNDKDSNKNNNKNSNKDRSKEKGKDRDYG 348

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
           +     G        +   + S     + +   N++   +      +  + +        
Sbjct: 349 SGTKGKGTDKGDDLEKGQDNRSDRTDNQGNSDRNNDQNTDKEKQSPKQAEPAEKAGKRDN 408

Query: 702 MESSNSSSDPIVKKTRW 718
            ++  +S+      +R 
Sbjct: 409 QDTKQNSNRKTEGDSRN 425


>gi|39104543|dbj|BAC98214.2| mKIAA1604 protein [Mus musculus]
          Length = 907

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 4/154 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++            +      +   D++      D+       S      +     E   
Sbjct: 754 DQRHQEGRTERARSERHRAQNSRDADRDPLAKHMDDRSHENSHSRVGNGREQGSHREPED 813

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD---ITNHNLLENG 682
                +++RR RR   +++      +  S      D S              +    +NG
Sbjct: 814 RHGEPKKKRRERRDSFSENEKQRSRNQDSDNVRRKDRSKSRERSRRHSGHKGDDARCQNG 873

Query: 683 AHGFTENYDVSIPPVST-PEMESSNSSSDPIVKK 715
           A    E               +       P  +K
Sbjct: 874 AERRWEKPSRRPEQSRESKRSQDRRREKSPTTQK 907


>gi|322706069|gb|EFY97651.1| DNA mismatch repair protein msh6 [Metarhizium anisopliae ARSEF 23]
          Length = 1222

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 5/150 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              +         S SQ            +DE       S+  ED   + ++ + +  + 
Sbjct: 154 AESSDEEQPFNYSSKSQTRRGRARRTVKDEDEFDEDDVASQEEEDDMGDFIASDDSDDLP 213

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQ-NVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           + ++R+R  + AT    + V       Q + I D  D  M     T+     N     TE
Sbjct: 214 RTKKRKRPAKAATARKRSNVSPPADIRQGSPIHDVDDELMTEVPTTSTTSQWNYDPESTE 273

Query: 689 NYDVSIP----PVSTPEMESSNSSSDPIVK 714
              V  P        P+ +    + +P  +
Sbjct: 274 KRPVVTPAERAAAKDPKRKEKAHTKEPEDR 303


>gi|261839788|gb|ACX99553.1| 30S ribosomal protein S1 [Helicobacter pylori 52]
          Length = 552

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|301614223|ref|XP_002936596.1| PREDICTED: hypothetical protein LOC100485119 [Xenopus (Silurana)
           tropicalis]
          Length = 1043

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 2/159 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK    Q  +    +  S  Q  S  K+      D  +    ++E  E   +        
Sbjct: 617 EKRKRQQVKLRGRKRRRSQIQRNSASKSRSRYKHD-PVDESSETEGQETTSERHKEGIKL 675

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
            +   R   + RR    +           SI   +  S  +                   
Sbjct: 676 TIRTIRVASKNRRHEVPEAQPEISEEAEESIGRTLRRSPRISRPSVKPAAEVKDRKAEKK 735

Query: 686 FTENYDVSIPPVSTPEME-SSNSSSDPIVKKTRWWKRRK 723
            ++  D      +  + E  ++  S   +KK +  +RR+
Sbjct: 736 QSDEEDKPASQRTEKDDERKTDKDSSQKIKKNKPRQRRR 774


>gi|255544660|ref|XP_002513391.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
 gi|223547299|gb|EEF48794.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
          Length = 587

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 8/170 (4%)

Query: 554 IGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
              +L    + + +         N+ +++  D   P   +  +   + +         SL
Sbjct: 371 PTKQLQPPKYVLKDDNMQHGGKNNSRYEMVFDGDTPESPRQEKRNGRHDPEREKMHRRSL 430

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           ED++     ++  G   ++R R R  R    HH+          +   D   +   +  D
Sbjct: 431 EDLKHGAEEKKYQGDGHRQRDRNRGHREDDRHHEK---KPSRYPEERTDRRKERDDDRRD 487

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             ++        G  +            +  +   S    ++    +KRR
Sbjct: 488 DRDYWNRSADVEGRGD----GRENEGYRKRTADYDSRRGELRDGSNYKRR 533


>gi|118475172|ref|YP_892406.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40]
 gi|118414398|gb|ABK82818.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40]
          Length = 557

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 39  KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98
            G+     V+ +EP    AFVD G +  GFL   EI  D  +   + +  + +   +   
Sbjct: 288 VGDTIKVIVSNIEPY--GAFVDLGNDIEGFLHISEISWD--KNIKNPKDFIKENEELDVE 343

Query: 99  DSEAVADD 106
             E   ++
Sbjct: 344 VIEIDVNE 351


>gi|54025606|ref|YP_119848.1| shikimate kinase [Nocardia farcinica IFM 10152]
 gi|54017114|dbj|BAD58484.1| putative shikimate kinase [Nocardia farcinica IFM 10152]
          Length = 493

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 28/145 (19%), Gaps = 8/145 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +            +     +  S D               P ++   D   +        
Sbjct: 319 RHHASTPGRAPVRRRPRRRRGRSTDPTSTDRRDRATTSGAPPADETTDTTASTPG--RPD 376

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               R R RR              +      N      D    P        +       
Sbjct: 377 RSPDRPRARRSGDRTRHAAPRSTRAPADRPAN------DAATGPGPDGPDAPIPQHDGAD 430

Query: 687 TENYDVSIPPVSTPEMESSNSSSDP 711
                    P S  E  S+ +SS P
Sbjct: 431 PRELSAPRSPSSADEKPSTATSSAP 455


>gi|7209719|dbj|BAA92310.1| unnamed protein product [Mus musculus]
          Length = 1054

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 4/120 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL----EDIQDNIVSEES 624
            P                 P+  K  E     E     PK        E         E 
Sbjct: 540 EPEPTTPKKPEPTTPKEPVPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEP 599

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
           T          ++  P T       +   +    V   + ++  +P + T  +   + + 
Sbjct: 600 TTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSK 659


>gi|324499522|gb|ADY39796.1| Msx2-interacting protein [Ascaris suum]
          Length = 1768

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 85/313 (27%), Gaps = 42/313 (13%)

Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487
           +DM  +K  + VEK L E                    EM+++  +    ES+ K     
Sbjct: 205 VDMPPEKKKQKVEKSLVEISMFP---------------EMNKKEPKQKKKESSRKTSEVK 249

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--- 544
           K     ++Q S      + + + L +                    ++     + E    
Sbjct: 250 KAKEAEKAQVSKTEQFEKKLAKRLRKEQKEREEEQKREADESKKKKEENRIERDIEKSSG 309

Query: 545 RFGVSINVVI----------------GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
           + G    +V                  +    +    E                 +  A 
Sbjct: 310 QTGKEKEIVKTEKENREEEEDNIQKMEVTAETQHDEKESMKTETQSEEMPQNEVVEEAAV 369

Query: 589 SYD-----KNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIRKRRRRRRRRRPA 641
             +     ++I+    +E +    + ++ E+I D       E     R+R+R+       
Sbjct: 370 KEEYECSCESIDEKQLEEGIKQDDEHKTNENIVDLGEKPPLEDEVNGRERKRKADENEGV 429

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
            D       +     +  + DS     E     T                +  +  +S P
Sbjct: 430 FDVKRVKEETKEEMPRKQLSDSDSSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEP 489

Query: 701 EMESSNSSSDPIV 713
             +SS +++    
Sbjct: 490 RSDSSTTAAVKSE 502



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 60/229 (26%), Gaps = 17/229 (7%)

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
                ++      EE           V    +     +++K     + E           
Sbjct: 343 HDEKESMKTETQSEEMPQNEVVEEAAVKEEYECSCESIDEK-----QLEEGIK-----QD 392

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
                ++        P       G +    +       +++ V ++       K  S  D
Sbjct: 393 DEHKTNENIVDLGEKPPLEDEVNGRERKRKADENEGVFDVKRVKEETKEEMPRKQLSDSD 452

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                  +++T   +  +RR  R+R   +  +        S       S         +T
Sbjct: 453 SSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEPRSDSSTTAAVKSELSEESERLLT 512

Query: 675 NHNLL-------ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             + +       E  +  ++   D S     + +  + +  S  +  +T
Sbjct: 513 PSDTVVKPCVVDEPASEKYSLLEDASKWGAESAKSVTDDDESASVSART 561


>gi|156051518|ref|XP_001591720.1| hypothetical protein SS1G_07166 [Sclerotinia sclerotiorum 1980]
 gi|154704944|gb|EDO04683.1| hypothetical protein SS1G_07166 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 830

 Score = 39.2 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 38/154 (24%), Gaps = 10/154 (6%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             ++       +  +       ++ I    +      +   E  E        EE+  + 
Sbjct: 262 EALERANRERKQREAREAKERMEREIREAKERRDREELEAREKREKAAREKEREENERIA 321

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           R  R  +  R               +  +      +D  +         L +       E
Sbjct: 322 RLEREDQVARERKAKEEREIRERIQAEAEAKARADYDRRLREEIARREVLRKEEEAIRRE 381

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              + +  ++  E +          KK R  K R
Sbjct: 382 QEMLRLEAIARVEAD----------KKARAEKER 405


>gi|154272161|ref|XP_001536933.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408920|gb|EDN04376.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 904

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 81/310 (26%), Gaps = 29/310 (9%)

Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISN-FGLLEMSRQRIRSSVLESTTKVCTYC 487
           DM  +K+ ++     +++     A   +   S    ++E + +   S +L  T    T  
Sbjct: 144 DMASEKHQQNGVLIGEDTSSTPPATTDLEPRSPALDIVEPTDKDSHSPLLPGTQASNTVD 203

Query: 488 KGAGYIRSQSSVALSILRSVEEY---LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544
              G +           R          +    +       ++      +K       E 
Sbjct: 204 --VGALPGTRLTPQQGTRDNTSSPNIARERNGGDGPKARPQEMPHQQAEEKATDKNHVEK 261

Query: 545 RFG----VSINVVIGIELADKLFYIEKGSPVQALVNTG----HKVGSDSQAPSYDKNIEC 596
            F        ++        +    E     +          +    + +  + ++ +  
Sbjct: 262 SFSDTDEGPTHLKKDNGAHTENDAAEVSEGTKTQEPEEVKINYPASDEQKDGADERPVRQ 321

Query: 597 VWQDEALLPIPKSESLED-------IQDNIVSEESTGVIRKRRRRRRRRR------PATD 643
             ++ ++  +P+  S ED                S     + R R RR+R         +
Sbjct: 322 KLKETSIAGVPRPNSPEDHAMASQGTPVAGAESVSDTSSVEGRGRLRRKRSLGDMNEHEE 381

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
           H +     +     +    S D   +          +  +   TE+       +   +  
Sbjct: 382 HDEVAGGKNTDETGHRRKRSRDSKTDDESSDKQERSK--SKSTTEDSHGMTDNMDAKDAT 439

Query: 704 SSNSSSDPIV 713
           +      P  
Sbjct: 440 NKGGIRTPTE 449


>gi|302508291|ref|XP_003016106.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
 gi|291179675|gb|EFE35461.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
          Length = 995

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 41/172 (23%), Gaps = 12/172 (6%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603
                        E+      ++             +  S+ + P      + VW++   
Sbjct: 544 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEEPRSEEEGPKQRFPSKDVWEEAPE 603

Query: 604 LP--IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI- 660
                   E+  D + +   E+ +      R  R+  R +T+       +   +      
Sbjct: 604 SQQLTAAVEAPADSEKSEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPTKTQATSPTEL 663

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                +   P                 E    +I   +  +     + S P 
Sbjct: 664 KKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDTAPPATKSKPA 715


>gi|224066201|ref|XP_002194952.1| PREDICTED: SET domain containing 5 [Taeniopygia guttata]
          Length = 1392

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 11/174 (6%)

Query: 557 ELADKLFYI---EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
           EL  +   I   E  S     V  G    SD++ P  ++  E   ++ A        S  
Sbjct: 413 ELEMEQQNIASDENSSQQTEEVPEGPAAVSDNEVPEKEEKQEGEKEEPADEQGALVHSRR 472

Query: 614 DIQDNIVSE---ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
             +D  V         + +++RRR +     +   +  V S+   ++ +  ++ +     
Sbjct: 473 SREDRKVEAIMHMFENLEKRKRRREQPSDRNSTDAEINVNSEAPELEEIKTETPETEDGS 532

Query: 671 SDIT-----NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
           S ++       N         ++  D       T    +  S   P  + +R+ 
Sbjct: 533 SALSAAPPPPTNSTGVNTRRSSQVADAVPEKTVTKPAPAKPSRPRPKSRFSRYR 586


>gi|196968477|gb|ACG80812.1| hypothetical protein [Chlamydophila pecorum]
          Length = 276

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/148 (6%), Positives = 32/148 (21%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  ++  ++     +P      E   ++ +   +   ES                 
Sbjct: 87  KEPSPKESSPKELSPKESSPKEPSPKELSPKESSPKELSPKESSPKESSPKEPSPKEPSP 146

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           ++   +    +  +    +   S             ++  +       +  +      + 
Sbjct: 147 KEPSPKESSPKELSPKESSPKESSPKESSPKESSPKELSPKELSPKELSPKKPSPKESSP 206

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                  P          S   P  K++
Sbjct: 207 KELSPKKPSPKESSPKELSPKKPSPKES 234


>gi|212536086|ref|XP_002148199.1| RNA polymerase II transcription elongation factor (Ctr9), putative
            [Penicillium marneffei ATCC 18224]
 gi|210070598|gb|EEA24688.1| RNA polymerase II transcription elongation factor (Ctr9), putative
            [Penicillium marneffei ATCC 18224]
          Length = 1190

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 14/180 (7%)

Query: 533  NQKRATI-VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY- 590
            N  R TI  + E              L  +     + + ++       K     Q     
Sbjct: 937  NMGRNTISKQLERSIQNQKEYEEKNALKLQQARAAREAELKRREEEVQKAQELEQERKRQ 996

Query: 591  -DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-------RRRRRRPAT 642
              +  + + ++   L   ++E     +   ++ ++    R++R+       RRR+R    
Sbjct: 997  VAEQRQRIIEETQRLAAKRAEEQRAREAAELTTDTETGERQKRKKKAPSGGRRRKRH--- 1053

Query: 643  DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
               D GVVSD  S+     D       P                 +     +   S  E+
Sbjct: 1054 -DEDDGVVSDGRSVSVARSDDEGTTPAPKRRRRLERRGGAKEKPGKYKSSELVVDSDEEL 1112


>gi|115738175|ref|XP_789946.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115941689|ref|XP_001189413.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 889

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 50/176 (28%), Gaps = 18/176 (10%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             F  E  +    +           + PS     +         P   S +  ++  +  
Sbjct: 440 PDFK-EHFAEKVEITMDMRDYDPSERRPSAVPEKDIEADKTTTPPKKTSSTRNNLSVSNT 498

Query: 621 SE---------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
                             +T    +RR R+R  +  +   ++   + V    N ++   D
Sbjct: 499 RLTITPMQSSENLQTIYRATSPSTRRRFRKRSEKSRSQSQESSKRTTVDIEMNRLNADDD 558

Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              +  +          +    +  +    P S  +     ++S+P + +T+   R
Sbjct: 559 EEEDEGEDAPMIPKHTSSPRAPQKRESI--PHSPLKETQYMAASEPQLAETKQRGR 612


>gi|74695083|sp|Q75CK5|NST1_ASHGO RecName: Full=Stress response protein NST1
          Length = 1207

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 35/124 (28%)

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           K  E   Q E    + +     ++Q      +     ++++    R+R            
Sbjct: 614 KEEEKRKQVEEEARLKQEAEAREMQRRENQRKKVEEAKRKKDLEMRKRLEEQRRREEEQE 673

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
               ++  I    D   +  +       +       ++ +V        +    +S  D 
Sbjct: 674 RQRRMKEEIKRKRDQERKQREEEQRKRKQEKELKKLQSLEVKKKREEDDKPTEESSQEDN 733

Query: 712 IVKK 715
           + K+
Sbjct: 734 LHKE 737


>gi|327352839|gb|EGE81696.1| rRNA maturation protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 904

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 9/186 (4%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIE 566
             +      +   V   L  Q+R    + E + R  V I +          +  +    E
Sbjct: 73  SRSDQDAPRSRPGVTKSLGEQRRKETLLKEMQRRSKVGILLDRRFGENDPTMTPEERAAE 132

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + +           + +        +                    +D+  +    ES  
Sbjct: 133 RFARESQKKLKKESMFNLEDDEEEMQLTHLGQTITFDKENKDDFEEDDLNASDEDGESEK 192

Query: 627 VIRKRRRRRRRRRP--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
             ++RR          A D  + G      S   V+ +                 ++   
Sbjct: 193 ARKRRRNAEEDDMEGLAGDSEEEGQPERKKSKNEVMKELIAKSKFHKYERQKAKEDDDDL 252

Query: 685 GFTENY 690
             + + 
Sbjct: 253 RASLDK 258


>gi|325115343|emb|CBZ50898.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 2106

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 37/158 (23%), Gaps = 7/158 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +                D +    D++          L   +       ++     +S G
Sbjct: 76  RKKSAGKYRKATGASSLDEREDRDDRSKTKAPHLSRSLTHARRSLPSGGEEEEEKRDSEG 135

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH-------NLL 679
              +++  R+R R   +        D   + +   +      E  D           +  
Sbjct: 136 ERARKKLPRKRSRVDVEREAREDARDEQVLFSRRRERERHKDERDDRGKEARLLRRVDEG 195

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                      D S         +  +   D   ++TR
Sbjct: 196 NRRTKKGAFRTDASPSSSLAGSSQEDDRKQDRTGRRTR 233


>gi|194223659|ref|XP_001918224.1| PREDICTED: similar to Regulating synaptic membrane exocytosis
           protein 1 (Rab3-interacting molecule 1) (RIM 1) [Equus
           caballus]
          Length = 1568

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 40/159 (25%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +E   P            S S+ P   K    + +                      E  
Sbjct: 245 VEPAQPAAGPEQKQAASRSRSEPPRERKKTPALSEQNGRAAPKSERRRAPRASAPPGEGP 304

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                ++ RR  RR       D     +        +D+     E          E GA 
Sbjct: 305 AEERERKERRESRRLEKGRSQDYPDGPETRERGRAAEDAKPSKEEEYQTRYRTRPEPGAK 364

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +    +S+ + ES   S     +  R  K+R+
Sbjct: 365 REKVETTLGDDSLSSDQSESVRPSPPKPHRSRRGGKKRQ 403


>gi|123469906|ref|XP_001318162.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121900914|gb|EAY05939.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 5296

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/230 (7%), Positives = 64/230 (27%), Gaps = 8/230 (3%)

Query: 494  RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV- 552
            ++ ++      R +EE   +       ++   +    L N+K  T  + E          
Sbjct: 3556 KNLANEKSEAERKLEEVQNEKAETERKLNEAEEANKNLENEKNETQKKLEEAEQQKAETQ 3615

Query: 553  -------VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
                        LA++    E+                       ++      + E  L 
Sbjct: 3616 KLLEQTEEAKKNLANEKSEAERKLQETEEAKKNLANEKSEAERKLEEVQNEKAETERKLN 3675

Query: 606  IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
              +  +     +   +++      +++   ++    T+     + ++ S  +  + ++ +
Sbjct: 3676 EAEEANKNLENEKNETQKKLEEAEQQKAETQKLLEQTEEAKKNLANEKSEAERKLQETEE 3735

Query: 666  MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                 ++  +    +       +         +    ++  +  +   KK
Sbjct: 3736 AKKNLANEKSEAERKLEEVQNEKAETERKLNEAEEANKNLENEKNETQKK 3785



 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 59/641 (9%), Positives = 167/641 (26%), Gaps = 30/641 (4%)

Query: 84   SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
            S++++L ++ + A  +   +  D    ++     +  +            +   + +   
Sbjct: 3350 SEKESLQQKLDSANDEKNKLEQDKHKLEIDNTKLNDAKSHLENEKSQLAQQINDLNNKLQ 3409

Query: 144  DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
             +      ++    ++  K    Q    ++ +  Q LL Q+ + ++  +           
Sbjct: 3410 KLEEEKNKLEEEKAQNEKKLENSQQDGDKLGQQNQDLLKQLEEIKQKLQQTEQEKSALEQ 3469

Query: 204  GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
             +  +        + +        D K   +     +      +       +  + ++++
Sbjct: 3470 QKNEIQNKLNEIEQQMKDSEKEKEDIKQKLQQVEQEKSETQKKLEEAEQQKNEIQNKLEQ 3529

Query: 264  DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
              +    L +   E            +     K        +  +E   +  K     + 
Sbjct: 3530 TEQEKKNLENEKAETEKRLQETEEAKKNLANEKSEAERKLEEVQNEKAETERKLNEAEEA 3589

Query: 324  FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
               L         +  E          +  Q +   +      S     + +TE      
Sbjct: 3590 NKNLENEKNETQKKLEEAEQQKAETQKLLEQTEEAKKNLANEKSEAERKLQETE------ 3643

Query: 384  VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
                        +  A +   E   E A   R  + A       ++ E+ +  + +E+  
Sbjct: 3644 ---EAKKNLANEKSEAERKLEEVQNEKAETERKLNEAEE-ANKNLENEKNETQKKLEEAE 3699

Query: 444  KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503
            ++     +A  Q        LLE + +  ++   E +       +     ++ ++     
Sbjct: 3700 QQ-----KAETQK-------LLEQTEEAKKNLANEKSEAERKLQETEEAKKNLANEKSEA 3747

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV--------VIG 555
             R +EE   +       ++   +    L N+K  T  + E                    
Sbjct: 3748 ERKLEEVQNEKAETERKLNEAEEANKNLENEKNETQKKLEEAEQQKAETQKLLEQTEEAK 3807

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
              L ++    EK            +          D+  +     E      +    E  
Sbjct: 3808 KNLENEKSETEKKLQETEEAKKNLEQEKSDIQKKLDETKQQKVNLENEKAETQKLLEETE 3867

Query: 616  QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
            +     E       KR +     +    +  +     +  +QN   ++     E  +   
Sbjct: 3868 EAKKNLENEKAETEKRLQETEEAKKNLANEKSEAERKLEEVQNEKAETERKLNEAEEANK 3927

Query: 676  HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +   E                 +   +E +  +   +  + 
Sbjct: 3928 NLENEKNETQKKLEEAEQQKAETQKLLEQTEEAKKNLENEK 3968


>gi|58260672|ref|XP_567746.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229827|gb|AAW46229.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1049

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 38/152 (25%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +EK            KVG         +  +   + ++       +  E   D  V+  
Sbjct: 472 KVEKKEVEGERKKDDKKVGEKKHDEKVAEGDKKNDKSQSGRKKHDEKVGEKKHDEKVAGG 531

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                  +  R++      +  D  +    +  +N  +       E    +     + G 
Sbjct: 532 DKKDDESQSGRKKPSSGDKEGGDKRLDHKKTDKKNNEEKDDKKAGEKKSGSKEGDKKPGD 591

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               +  +               + + P  KK
Sbjct: 592 KKGDKKAENRNEEAGKKPANEKEAVNKPGEKK 623



 Score = 38.0 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 41/157 (26%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +K S      +    VG++ +        +   +  A       +     +      E  
Sbjct: 400 DKKSATGEKRDEKRAVGAEKKDDKKVAAADKDDKKAAGGNRKDDKEATGAEKKAAGAEKK 459

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              +    +  R+    +        D    +   D+      + +D +     ++    
Sbjct: 460 DDKKAGDTKAERKVEKKEVEGERKKDDKKVGEKKHDEKVAEGDKKNDKSQSGRKKHDEKV 519

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             + +D  +      + ES +    P         +R
Sbjct: 520 GEKKHDEKVAGGDKKDDESQSGRKKPSSGDKEGGDKR 556


>gi|281339825|gb|EFB15409.1| hypothetical protein PANDA_007678 [Ailuropoda melanoleuca]
          Length = 2992

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +  P     +  +   S S+A           ++ +      +E+L D       +E   
Sbjct: 2645 RREPFLVNESLDNVKNSGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEE 2704

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              R+  +R+R+R   +   +     DV   +           EP D    N  +      
Sbjct: 2705 EERQMPKRKRKRHYPSSEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSK 2764

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVK 714
            T +   S    +  E +  +S      K
Sbjct: 2765 TSSKTNSTASRAMDEKDEYSSGEAAGEK 2792



 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 54/221 (24%), Gaps = 13/221 (5%)

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
            +G   ++     S  +       +     +  H+       +  ++R        R   S
Sbjct: 2661 SGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEEEERQMPKRKRKRHYPS 2720

Query: 550  INVVIGIELADKLFYIE-------KGSPVQALVN------TGHKVGSDSQAPSYDKNIEC 596
                +          IE       +  P               K  S + + +     E 
Sbjct: 2721 SEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSKTSSKTNSTASRAMDEK 2780

Query: 597  VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
                       K+E  +D       E+   +I+++R R R+    T           + I
Sbjct: 2781 DEYSSGEAAGEKAEQNDDDNIKSQEEDQPVIIKRKRGRPRKHPLETALKTKEDCKTDTGI 2840

Query: 657  QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
              V         + +     N         + + D S    
Sbjct: 2841 VTVEQPPPGGKPKSTQTDESNKETTTQQERSVSNDDSEEKT 2881


>gi|332855357|ref|XP_524246.3| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 87 [Pan
            troglodytes]
          Length = 2785

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/213 (8%), Positives = 53/213 (24%), Gaps = 17/213 (7%)

Query: 517  HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576
              +   T      +    ++  + E E        +    E+  +   ++     Q   N
Sbjct: 1470 KQVHGETRKSWKAWKEEWEKRLLQEEEKLHQAGAKLSPEEEMLQEDKKLKWEEWKQVWEN 1529

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                   + Q    ++               +          +  E+       +R R  
Sbjct: 1530 MLSSKSKEQQYKDEEEVTLEEEVSREGEEKEQQ---------VTEEQRQIQEEHKRARIH 1580

Query: 637  RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--------DITNHNLLENGAHGFTE 688
            R+R   +   A     ++  +  +        +           IT  +     A G   
Sbjct: 1581 RKRARAEKKRAQEERKLAQEEEKLAQEERQLAQEKRKLAQAYMKITQDDREMAQAEGKIA 1640

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              + ++        + +   +    K  + W++
Sbjct: 1641 QKEETLAQRGEKLSQEAEKLAQKRKKLAKKWEK 1673


>gi|308454214|ref|XP_003089756.1| hypothetical protein CRE_07908 [Caenorhabditis remanei]
 gi|308269001|gb|EFP12954.1| hypothetical protein CRE_07908 [Caenorhabditis remanei]
          Length = 798

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/145 (8%), Positives = 27/145 (18%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P + +        SD+Q     +        +     P             ++       
Sbjct: 75  PAKRVRQEDEAGPSDNQRSLPVRRTPAKRGRQDDETGPSGTQNTPRVRRTPAKRGRQNDE 134

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
                 RR +            +  +             +     N    +N   G   +
Sbjct: 135 AGPSDSRRPQNNPRQRPPKTPKNPRTPNTPKTPRTTRSQKSQRTPNTPKNQNKWKGPRTS 194

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714
                P       +   +      K
Sbjct: 195 GKPRTPNTPKTRRKQKWTKGMKNKK 219


>gi|302890002|ref|XP_003043886.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256724804|gb|EEU38173.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1201

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            ++  +     G+ S             +D+      +     D  D+ ++ +S   + +
Sbjct: 131 AESSDDEPFTFGASSTRRRPRARPSVKDEDDYDEEEVEQAEDTDTMDDFIASDSDEDVSR 190

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            ++R+R  +PA     + + S V +    I DS    +E  ++    L   G+     NY
Sbjct: 191 PKKRKRSSKPAAPRKRSNMSSPVPAPDIDIKDS---ILEDDEMMEDILEGEGSTASQWNY 247

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKT 716
           D            +  ++ DP  K+ 
Sbjct: 248 DPKSSEKHPVMKPAERAAKDPKYKEK 273


>gi|260796101|ref|XP_002593043.1| hypothetical protein BRAFLDRAFT_120702 [Branchiostoma floridae]
 gi|229278267|gb|EEN49054.1| hypothetical protein BRAFLDRAFT_120702 [Branchiostoma floridae]
          Length = 1736

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/166 (8%), Positives = 32/166 (19%), Gaps = 7/166 (4%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                 L        +    +  +                   +      + + I      
Sbjct: 1294 RSDPALDR-DMRDVRNLRAERDLRDARSDRDIRAERDLRPERDMRGDVRSDIDIRSDRDF 1352

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRR----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
                + +  E       + R R+R     RR  +  HD+                     
Sbjct: 1353 P--SEALDREVRGRQESRERPRQRSYERLRRSRSGSHDSRSSKLSEKRSRRGRSPERKQR 1410

Query: 669  EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
              S        ++     T + D      +  +      +     K
Sbjct: 1411 PRSLDRERKKQQSSDDKSTASQDTRTEEEARTKTPEPKPADKEEEK 1456


>gi|158340272|ref|YP_001521442.1| hypothetical protein AM1_B0410 [Acaryochloris marina MBIC11017]
 gi|158310513|gb|ABW32128.1| hypothetical protein AM1_B0410 [Acaryochloris marina MBIC11017]
          Length = 297

 Score = 39.2 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 53/206 (25%), Gaps = 31/206 (15%)

Query: 527 VVLYLLNQKRATIVEYEARF---GVSIN----VVIGIELADKLFYIEKGSPVQALVNTGH 579
           V+L L    + T+ E EA+       I     ++    L   +  I +G           
Sbjct: 10  VLLELKTHYQETLAELEAQTIQLKTKITSLDTLIEDPLLGSDILSILQGEAASIESEAPG 69

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
              +++  P                     +S         + +      K+     + +
Sbjct: 70  STVANTVEP---------------------KSKPKKTTQKAASKKKSATPKKPDSTTKTK 108

Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYM---EPSDITNHNLLENGAHGFTENYDVSIPP 696
                      +   + Q     S        + S     +  +        +  V+   
Sbjct: 109 GTVKPEVEATATPKKAAQKASPSSGKRKSPTSKKSASAPKSTQKVKPKAEATSPQVAQKA 168

Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722
            S     S N +S    KKT+   RR
Sbjct: 169 SSKKSSTSKNIASQNKAKKTKRQGRR 194


>gi|324992025|gb|EGC23947.1| translation initiation factor IF2 [Streptococcus sanguinis SK405]
 gi|324994118|gb|EGC26032.1| translation initiation factor IF2 [Streptococcus sanguinis SK678]
          Length = 931

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 47/182 (25%), Gaps = 4/182 (2%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R  E           +V    ++ L + +   +   +   R   S         A     
Sbjct: 5   RLYEIAKELGKESKEVVARAKELGLDVKSHSSSVEADASERIKSSFTKKA----AAPQAT 60

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +EK +  Q          +        +       +     +   +  +        E  
Sbjct: 61  VEKPAAAQPSPQKTPAKEAAPVKAEQTEAKAAAQPEAKAETVAPVKRPQSRNFKAEREAR 120

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                +RR+++  R+P           D  +      +  D    P+D  ++   +   +
Sbjct: 121 AKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRN 180

Query: 685 GF 686
           G 
Sbjct: 181 GQ 182


>gi|18420875|ref|NP_568464.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
           thaliana]
 gi|13430600|gb|AAK25922.1|AF360212_1 unknown protein [Arabidopsis thaliana]
 gi|14532872|gb|AAK64118.1| unknown protein [Arabidopsis thaliana]
 gi|332006012|gb|AED93395.1| U2-associated protein SR140 [Arabidopsis thaliana]
          Length = 946

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 42/164 (25%), Gaps = 5/164 (3%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A     +++    +        +                 + +  +   + E    +   
Sbjct: 785 AQPDNGMDEEQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVDYGLSGP 844

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                +   I +R+ +R   + ++     G     S  +       D  +        + 
Sbjct: 845 NEGNRNQKSIIERKEKREDSQESSKKRHRGENKSQSPPRKSSTRERDHDLGRDRDRERHR 904

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +  H    + D      S    ++  S       + R W+RR
Sbjct: 905 DRDRQHDLNRDRDRREKSSSHDRDDNDRSKE-----RDRDWRRR 943


>gi|85089553|ref|XP_958002.1| hypothetical protein NCU06935 [Neurospora crassa OR74A]
 gi|28919305|gb|EAA28766.1| predicted protein [Neurospora crassa OR74A]
          Length = 1347

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/156 (6%), Positives = 30/156 (19%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+   +        +                   +E      +    E+ +     +   
Sbjct: 442 ERIRLLDERTQKQAQEHRKQAEAQKQAVEARKRFEEQKRLEEQKRLAEERKKAEAQKRCE 501

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++   R++         +   + +   ++          +E                
Sbjct: 502 EERKQAEARKQAEEARKRIEEQKRLEEQKKLEEQKRLEEQKKLEEQKRIEEQKRIEEQKK 561

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
             E   +        +            KK    KR
Sbjct: 562 LEEQKKLEEQKRIEEQKRIEEQKKLEEQKKLEEQKR 597


>gi|221481979|gb|EEE20345.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 820

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 67/256 (26%), Gaps = 11/256 (4%)

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           +S Q  R   LE  +       G G             R       +    ++ V     
Sbjct: 107 VSSQLEREKDLERESDRDFMSDGRGDGEDVERRTEKESRKGNGREKRQKRFSVEVRESPQ 166

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGI----ELADKLFYIEKGSPVQALVNTGHKVG 582
                ++++RA++   E R    I          EL  +   +EK S             
Sbjct: 167 -----MHRRRASLAGEEWREAGDIGEESEAGPHAELEVEADVVEKKSEKTRRTRHRPVKK 221

Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
               A    K    + +DE   P          +     EE+ G  +++     R R   
Sbjct: 222 KAEPALDRKKTQADLEEDEGEAPRAALSRRTRTKVEEDGEETRGKAKEKTSGNARGRGDN 281

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYME--PSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
               A   +             +   +  P D  +     +           S  P  + 
Sbjct: 282 TGSVASEGAPQPRGPLRRSPRLEGQEQHGPEDALDDLFSFDSPSPECAPAVSSSLPAGSG 341

Query: 701 EMESSNSSSDPIVKKT 716
             ++S +  +   ++ 
Sbjct: 342 RRKASQTEKNKKRREV 357


>gi|189054268|dbj|BAG36788.1| unnamed protein product [Homo sapiens]
          Length = 1148

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 424 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 483

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 484 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 537

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 538 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 595

Query: 720 KRRK 723
            R +
Sbjct: 596 SRER 599


>gi|189192112|ref|XP_001932395.1| hypothetical protein PTRG_02062 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187974001|gb|EDU41500.1| hypothetical protein PTRG_02062 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 9693

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 38/162 (23%), Gaps = 1/162 (0%)

Query: 552  VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
            +       +    IE+  P     +   +                  +      + +S  
Sbjct: 2088 IERDPRDIEPSRSIER-DPRDIEPSRSIERDPRDIELPRPSEPSRNGEPSRFAELQRSPE 2146

Query: 612  LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                 D+  S ES+     +R     R   +        S  +S       S +    P 
Sbjct: 2147 STRWSDSQRSPESSRYSDMQRSPESTRYSDSQRSPESTRSTDASRSTQPSRSAEPTRVPD 2206

Query: 672  DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                     +     + +      P  +   +  +S+   + 
Sbjct: 2207 PSRYAEPSRSSEPSRSVDQARDHTPARSTSQDKESSAIKAVT 2248


>gi|149641818|ref|XP_001509977.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 664

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/145 (6%), Positives = 23/145 (15%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                         G+  +            +        + +          S  +   
Sbjct: 428 LKQSHTKSFRVRDRGTPERKRGDPSQERDCERRLKDREGKQEQPRYREPHKKDSSRNRPE 487

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              + RR+ RR    ++ +                         D       E    G  
Sbjct: 488 QEDKPRRKDRREMEGNNKERREKVWEDRCSERDRPKNGRDRAIEDREKCQEKEEHRKGRK 547

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPI 712
           +  +            S        
Sbjct: 548 DRPNKDDKCGDRDRSTSERDRGRRE 572


>gi|1848181|emb|CAA72121.1| SRrp129 [Homo sapiens]
 gi|2822460|gb|AAC39565.1| splicing factor Sip1 [Homo sapiens]
 gi|119578296|gb|EAW57892.1| splicing factor, arginine/serine-rich 2, interacting protein,
           isoform CRA_a [Homo sapiens]
          Length = 1148

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + +     S+       +       EK   V     +       ++ P   ++      
Sbjct: 424 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 483

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
                     +  +  Q              +  R+  + P+  +  A       S    
Sbjct: 484 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 537

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
            D + +     S     +         +E+           +            +K+R  
Sbjct: 538 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 595

Query: 720 KRRK 723
            R +
Sbjct: 596 SRER 599


>gi|328848556|gb|EGF97764.1| hypothetical protein MELLADRAFT_84477 [Melampsora larici-populina
            98AG31]
          Length = 1233

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 109/350 (31%), Gaps = 23/350 (6%)

Query: 382  IDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440
             DV+ GR+  E    +    +  ++  E+       + +    + ++   + + + ++ E
Sbjct: 754  ADVDKGRAEVEKSKRELEKAKAVIDETEDKIFASFCKRIGVQNIREYEGYQLEVHQKTSE 813

Query: 441  KKLKESLKKDRARVQVGA--------ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492
            ++ +      R + Q+          I     LE S QR ++++ E    +    +    
Sbjct: 814  EQEQLETTLSRIKHQISFETGQLNGLIERLSTLETSSQRTQANLEELMVTMAELKE---E 870

Query: 493  IRSQSSVALSILRSVEEYLLQYTAHN---IIVHTHSDVVLYLLNQKRATI----VEYEAR 545
            I+   +  +   R   + +      +         S+     L++    I     E E  
Sbjct: 871  IKILDNEIVETERQHSDLVKAQDEASRAVADAKKKSNKASRQLDEIIKEIGTRNDEIEKL 930

Query: 546  FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605
                I++    +L      + +G   +A ++   +          ++  + +  D+  + 
Sbjct: 931  ASERISIYRRCKLESIDLPLLQGDLRKAPIDEVVRPVVPMDVDGQEETQQALVVDDYGIE 990

Query: 606  IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQ---NVID 661
            +      +D +++   E    +  K    + +    A        + +V           
Sbjct: 991  LDYEGLEDDEKEDGGPEVERQLEEKIELLKSKMEAMAPKTRSVERLEEVEVRLREHEKEF 1050

Query: 662  DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
            ++     + +      +       FT+ Y      +     E +   + P
Sbjct: 1051 EAARKRAKQTKDDFTEIKNQRVELFTKAYTHISEKIDGVYKELTKGKASP 1100


>gi|302306891|ref|NP_983318.2| ACL086Cp [Ashbya gossypii ATCC 10895]
 gi|299788735|gb|AAS51142.2| ACL086Cp [Ashbya gossypii ATCC 10895]
          Length = 1207

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 35/124 (28%)

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
           K  E   Q E    + +     ++Q      +     ++++    R+R            
Sbjct: 614 KEEEKRKQVEEEARLKQEAEAREMQRRENQRKKVEEAKRKKDLEMRKRLEEQRRREEEQE 673

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
               ++  I    D   +  +       +       ++ +V        +    +S  D 
Sbjct: 674 RQRRMKEEIKRKRDQERKQREEEQRKRKQEKELKKLQSLEVKKKREEDDKPTEESSQEDN 733

Query: 712 IVKK 715
           + K+
Sbjct: 734 LHKE 737


>gi|123965307|ref|YP_001010388.1| hypothetical protein P9515_00721 [Prochlorococcus marinus str. MIT
           9515]
 gi|123199673|gb|ABM71281.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9515]
          Length = 308

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 3/141 (2%)

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
             +    +  IE   Q   +       ++   +  +           +RRR R      +
Sbjct: 134 PQEDDIEEDYIEGRSQRRNISRAIPESAVSRRRPPLRESNKFENEEPKRRRNRSEDRMPN 193

Query: 644 HHDAGVVSDVSSIQNVIDDSFD---MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                   +  + ++ +               + N +L ++ +   T    +        
Sbjct: 194 EERRASFGERRASRSDVKRGSRPLPNKEVSRKLNNSSLKDSFSSTKTTRQSIRSQIPREK 253

Query: 701 EMESSNSSSDPIVKKTRWWKR 721
             ++S S +    KKTR  +R
Sbjct: 254 VEDASFSQNINEEKKTRQARR 274


>gi|297698361|ref|XP_002826293.1| PREDICTED: retinoblastoma-binding protein 6-like [Pongo abelii]
          Length = 1792

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E+S      
Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGEREKSPRSEPP 1058

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1059 IKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150


>gi|291393965|ref|XP_002713340.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain
            containing 1 isoform 2 [Oryctolagus cuniculus]
          Length = 1452

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 31/153 (20%), Gaps = 4/153 (2%)

Query: 575  VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR- 633
                       +    +++     +        +     D       +   G   +RR  
Sbjct: 1293 RPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSADNTLERREKRRDGSPERRRER 1352

Query: 634  ---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
               R R   P+        + D                  S               + + 
Sbjct: 1353 SPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAKSTDRRRARSPERRRERSLDR 1412

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  V   E E ++  S     + R    ++
Sbjct: 1413 RSREDRVGPREREEASGKSSRHPPEQRRRPYKE 1445



 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 24/123 (19%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             P +     G     D  A           + +A      +   +        E +    
Sbjct: 1273 QPSEHHTWNGTSRKPDGGACRPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSAD 1332

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                RR +RR  + +                        +     +             +
Sbjct: 1333 NTLERREKRRDGSPERRRERSPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAK 1392

Query: 689  NYD 691
            + D
Sbjct: 1393 STD 1395


>gi|123403281|ref|XP_001302210.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121883477|gb|EAX89280.1| hypothetical protein TVAG_222340 [Trichomonas vaginalis G3]
          Length = 997

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 79/659 (11%), Positives = 196/659 (29%), Gaps = 38/659 (5%)

Query: 71  FLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFS 130
             ++  +  +I    +Q L K    + T  E       +  ++   + +  E+  +    
Sbjct: 193 IKDLESEITKITQEKQQILDKSKQKSSTIRELRTQVENNKIISEQLEKAKSELNSMNKKQ 252

Query: 131 QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190
              +   + SA    V    + +         +       Q ++  +    +++  ++  
Sbjct: 253 SIEDTYRMASAKMQDVVKNLNEEIIPLRQSRDEALVLLQKQMLLIKKYESSLELQDDKIR 312

Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250
              A ++       +   L         I     N  + ++L+++            I+ 
Sbjct: 313 LLNAKISELTDTINQNDDL---------IQESNENHAELEDLRQLVIDCITAFQPNYIIT 363

Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310
                 T   +  +   ++    +     LNS     V    +L K  + DL    +   
Sbjct: 364 AEQLPETISSLCHNDPTVLTRDIDFESSELNSNHSESVNLIDSLTKFCL-DLINGKVDLK 422

Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370
             +         + +KL   S    +R+                        + L ++  
Sbjct: 423 HFTSSYSPIVVDENLKLDAMSKLNQIREDYLQIIDNNEE----------DPIIGLLNKKD 472

Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430
             I     L    +++  +++   +   +L+    A  +I       DL   I    ID 
Sbjct: 473 FNIQNQNELSISLISTNCASKVLELSKKSLEALYPAKRQIPLICSNEDLPSEISRFVIDT 532

Query: 431 EEKKNNRSVEKKL-------KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES-TTK 482
           +     + V++ +           + D  +V V   S   L++   Q++R  +  +    
Sbjct: 533 KTGLE-KLVKQIMTVVHIDSNSLNEIDTIKVFVDICSK--LIQDLDQKVRPILGFAGKVV 589

Query: 483 VCTYCKGA---GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN----QK 535
                 G    G ++ +      I +     + +  +    V   ++ +   L     + 
Sbjct: 590 EIPSQIGEYIDGLLKREEEKIEVIKKENSLKIKELNSKLADVKQTNEALNDKLRKIAFEL 649

Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595
           R    E E     +  +   +E+A     IEKG   +        V       S  K  E
Sbjct: 650 RTVFNELEKTRKQNSALTEQLEVATDRIEIEKGENTKIQERQNQYVSVIKSLQSEVKRQE 709

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
            + ++   +   + E + + +  +  +E   + RK++      +         +     S
Sbjct: 710 ALLKERQEVNERRIEQMLENERQLRFDEVDALKRKQKAELSELQNQVGRKREKLSEIKVS 769

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
           +Q + ++  +              EN +       +  +      E+   N+  +  VK
Sbjct: 770 LQKLREEKEETEHALKMKITELEQENESTIRMAEDNDVLCKSRIEELMQLNTELEGKVK 828


>gi|91094257|ref|XP_969374.1| PREDICTED: similar to CG13625 CG13625-PA [Tribolium castaneum]
 gi|270016259|gb|EFA12705.1| hypothetical protein TcasGA2_TC002339 [Tribolium castaneum]
          Length = 553

 Score = 39.2 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 34/163 (20%), Gaps = 15/163 (9%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +       ++       D  +P   +  + +           S       D+I       
Sbjct: 190 RSRNGDRDISPPRSRRDDDISPPRRRRDDDISPPRRRKDDDISPPRRRRDDDISPPSRRR 249

Query: 627 VIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT----- 674
                  RRRR       +R   D        D  +       +  +             
Sbjct: 250 NDDISPPRRRRDDISLPRKRRDDDTSLPRKRRDDDTSSPRKRRNDGISSPRKRNNDDISP 309

Query: 675 -NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                 +          D   PP   P       S    +KKT
Sbjct: 310 ARKRSRDTSPSRRKGPKDGDSPPRRHPNKTEERQSEK--MKKT 350


>gi|321252636|ref|XP_003192475.1| pol II transcription elongation factor [Cryptococcus gattii WM276]
 gi|317458943|gb|ADV20688.1| Pol II transcription elongation factor, putative [Cryptococcus gattii
            WM276]
          Length = 1118

 Score = 39.2 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/149 (6%), Positives = 34/149 (22%), Gaps = 5/149 (3%)

Query: 573  ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                      ++    +  +       ++       + + ++      +EE         
Sbjct: 946  RAEEQARIRAAEEARQAELRIKAEEIAEQRRKAREDAMAWQEELAARQAEEEAKRAANME 1005

Query: 633  RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
            +R+RR+    D  + G        +           +     + + +             
Sbjct: 1006 KRKRRKEGIVDSGEDGEGEGRKREKKQRKKKTKEEKKSRKARSKSEVGTSDEEEEARETG 1065

Query: 693  SIPPVSTPEMESSNS-----SSDPIVKKT 716
                     +  + S      +    K+T
Sbjct: 1066 DEEDEEISRVRKAKSTLAMLKAKRKAKRT 1094


>gi|301320786|gb|ADK69429.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 384

 Score = 39.2 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 51/163 (31%), Gaps = 5/163 (3%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           + I   +  +    TG       +  + ++ I+    DE   P P          ++ +E
Sbjct: 143 YEIIITAKNENKHFTGSTNIFFIEDSTINEKIKPELPDEDKSPEPGYNEFSPNDSDLSTE 202

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +S         +    RP  +  D    +  +   +  + + D     S+ TN +   N 
Sbjct: 203 DSNNRNNGENPQGDENRPGNNSGDNSSRNPNNRTPDS-NSNRDGSSSNSNGTNDSRPNNE 261

Query: 683 AHGFTENYDVSIPPVS----TPEMESSNSSSDPIVKKTRWWKR 721
               +   +            P    + S ++      +WW++
Sbjct: 262 NETSSNPTNPPNEDQPGDYLNPYKPGNGSPNNGTNTDDKWWEK 304


>gi|291393963|ref|XP_002713339.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain
            containing 1 isoform 1 [Oryctolagus cuniculus]
          Length = 1481

 Score = 39.2 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 31/153 (20%), Gaps = 4/153 (2%)

Query: 575  VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR- 633
                       +    +++     +        +     D       +   G   +RR  
Sbjct: 1322 RPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSADNTLERREKRRDGSPERRRER 1381

Query: 634  ---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
               R R   P+        + D                  S               + + 
Sbjct: 1382 SPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAKSTDRRRARSPERRRERSLDR 1441

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  V   E E ++  S     + R    ++
Sbjct: 1442 RSREDRVGPREREEASGKSSRHPPEQRRRPYKE 1474



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 24/123 (19%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             P +     G     D  A           + +A      +   +        E +    
Sbjct: 1302 QPSEHHTWNGTSRKPDGGACRPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSAD 1361

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                RR +RR  + +                        +     +             +
Sbjct: 1362 NTLERREKRRDGSPERRRERSPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAK 1421

Query: 689  NYD 691
            + D
Sbjct: 1422 STD 1424


>gi|296203490|ref|XP_002748919.1| PREDICTED: M-phase phosphoprotein 8 [Callithrix jacchus]
          Length = 859

 Score = 38.8 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 6/179 (3%)

Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
           R    I+         K    ++    + L         D +  + +   E     +   
Sbjct: 197 RTKKRISEAREELKESKKPKKDEVKETKELKKVKKGEIRDLKTKTREDLKENRKTKKEKW 256

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
              + ES   + +++   E          R  R++  +    AG  + +        DS 
Sbjct: 257 VESQVESESSVLNDLPFTEDDSEGLLSESREERQKTKSAREKAGQDAGLERSFEKPLDSA 316

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               E +D+      +             +   +T            + KK R   R K
Sbjct: 317 LSAEEDTDVRGRRKKKTSRKSEDTRDSRKLENKNTFL------EKKTVPKKQRNQDRGK 369


>gi|172040384|ref|YP_001800098.1| transcription termination factor Rho [Corynebacterium urealyticum
           DSM 7109]
 gi|171851688|emb|CAQ04664.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 573

 Score = 38.8 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 31/137 (22%), Gaps = 4/137 (2%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                     K        +     +   + +       S    +       E+++G   
Sbjct: 58  ASDRPEQKAEKKAEQRSERNERGEGKQADRRDEQQDGHASSKEPENNSGQQEEQNSGNNE 117

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN----HNLLENGAHG 685
           +  RR  R     D+H      +  + +N                N        E+G   
Sbjct: 118 REDRRNNRHNDGGDNHQGRRRRNRRNRRNRRGGDRGHDRNNGHRHNGHGDGGNHEDGGEN 177

Query: 686 FTENYDVSIPPVSTPEM 702
             E  D    P   P  
Sbjct: 178 RKEQQDHKPEPQEAPVA 194


>gi|327283243|ref|XP_003226351.1| PREDICTED: hypothetical protein LOC100567093 [Anolis carolinensis]
          Length = 3006

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 65/261 (24%), Gaps = 10/261 (3%)

Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531
           +    L S     +  +     R  S       R ++ +L +           ++    L
Sbjct: 470 VHKPYLYSKYYSDSDDERTVEQRRLSVAKEKEERLLKRHLNREKLEEKRKQKAAEKTKML 529

Query: 532 L-NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
               +  +I   E      +               ++    +A ++   K  S       
Sbjct: 530 KTGNQVKSIQNLEESSSKGLEQKASGASIKDALKEQRFLEKKAALSRKRKRESRHDEEGR 589

Query: 591 DKNIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR-----RRRRRPATD 643
            K  E   +D  E L      E  ++++ +    E   +++K           R     +
Sbjct: 590 KKKHEQPEEDLEEPLKINESGEKAKEVKASQGKTEGNKLVKKLPESVHITDENRSDSKIE 649

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS--IPPVSTPE 701
                  S    ++ +  D      +       N  E      T            S  +
Sbjct: 650 KEHKRKTSSSFQMEGIQQDGELCDTKSQIDKAENNPEESQKQRTVFKTEKHIKKDDSETQ 709

Query: 702 MESSNSSSDPIVKKTRWWKRR 722
              +    +    K R  K R
Sbjct: 710 NVKTVPKKEARSSKDRNEKER 730


>gi|291393967|ref|XP_002713341.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain
            containing 1 isoform 3 [Oryctolagus cuniculus]
          Length = 1469

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 31/153 (20%), Gaps = 4/153 (2%)

Query: 575  VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR- 633
                       +    +++     +        +     D       +   G   +RR  
Sbjct: 1310 RPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSADNTLERREKRRDGSPERRRER 1369

Query: 634  ---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
               R R   P+        + D                  S               + + 
Sbjct: 1370 SPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAKSTDRRRARSPERRRERSLDR 1429

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  V   E E ++  S     + R    ++
Sbjct: 1430 RSREDRVGPREREEASGKSSRHPPEQRRRPYKE 1462



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 24/123 (19%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             P +     G     D  A           + +A      +   +        E +    
Sbjct: 1290 QPSEHHTWNGTSRKPDGGACRPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSAD 1349

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
                RR +RR  + +                        +     +             +
Sbjct: 1350 NTLERREKRRDGSPERRRERSPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAK 1409

Query: 689  NYD 691
            + D
Sbjct: 1410 STD 1412


>gi|296809281|ref|XP_002844979.1| SAP domain-containing protein [Arthroderma otae CBS 113480]
 gi|238844462|gb|EEQ34124.1| SAP domain-containing protein [Arthroderma otae CBS 113480]
          Length = 656

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 5/150 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES-TGV 627
           +PV        +      A    ++I     +    P  +    E       ++   T  
Sbjct: 146 APVPTPQPAVAEAEPAPVAELAVEDIAPAQPEPQPEPEQEPIQDESATKTSPTDADITKE 205

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                R+R+RR   +        S       + ++       P   T     +       
Sbjct: 206 DTDESRKRKRR---SQTPPPSPRSIALKKAKLEEEQQQSRPVPEQATADEQNKEQEETSA 262

Query: 688 ENYDVSIPPVSTPEME-SSNSSSDPIVKKT 716
                  PP    ++E   ++   P  K+ 
Sbjct: 263 AAPVTVEPPAQDTDVEMKESTPPAPEPKRD 292


>gi|159130402|gb|EDP55515.1| conserved serine-rich protein [Aspergillus fumigatus A1163]
          Length = 1042

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 12/232 (5%)

Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV--SINVV 553
                  ++R   +   ++      V     V     N+  A +   E        +  +
Sbjct: 626 PQERVEQLMREANQKFAKHHKDKEEVEEMIKVAK-EQNKDPAYVRNLEELLAKLDRVQKL 684

Query: 554 IGIELADKLFYIEKGSPVQALVNTG-----HKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
                + +   +E+                  +G+ SQ      +   +  +        
Sbjct: 685 EKRNRSSERDRLERARADLRAKREEIAKMEADMGTSSQDKQQKADSAKINGNANTSSAET 744

Query: 609 SESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
           +   +  + +  + E  G ++K     +       P T            + +     + 
Sbjct: 745 ASKAKGAEKSTPAAEPNGSVKKATEATKGAELSSTPTTAERKGSTKKATEAKKGPDSTAT 804

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               +P                    D  +PPV+T +            KK+
Sbjct: 805 PRAPKPRPTEEEAKGTPSESPENTTEDAKLPPVTTIQRGDLPKGKANGTKKS 856


>gi|115672742|ref|XP_001192677.1| PREDICTED: similar to telomere-associated protein RIF1, partial
            [Strongylocentrotus purpuratus]
 gi|115707422|ref|XP_788601.2| PREDICTED: similar to telomere-associated protein RIF1, partial
            [Strongylocentrotus purpuratus]
          Length = 2330

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 40/153 (26%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
               +  TG         P   + +      E       S      + +  S +S     +
Sbjct: 863  SSTMDETGMDETVIEVMPHSVEEVPERDVVETEKSAEVSSQKSTRRRSGRSRKSQSSKEE 922

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
              R +      T        SD             +     +  N +  ++         
Sbjct: 923  VARSQEENEEETSQDSTCADSDNVEQVTTRRGRSKLSQNSENERNESQEKSSIAEVKNTA 982

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 P  T ++   + +S+   K+T   KR++
Sbjct: 983  RRRGKPRKTEDVGEESQASESGEKETEEIKRKR 1015



 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 43/152 (28%), Gaps = 10/152 (6%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP-------KSESLEDIQDNIVS 621
            +    +     + G    + + +       +  ++  +        K    ED+ +   +
Sbjct: 941  ADSDNVEQVTTRRGRSKLSQNSENERNESQEKSSIAEVKNTARRRGKPRKTEDVGEESQA 1000

Query: 622  EESTGVIRKRRRRRRRRRPAT-DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
             ES     +  +R+R R   T D  +   + +    +              D    +L +
Sbjct: 1001 SESGEKETEEIKRKRSRPQKTCDRDEDSQLEEAEEGKKSEKTRG--RPGKEDEKISSLDK 1058

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            N     +E          + + E +   S   
Sbjct: 1059 NDQETDSEVLGTPTKRGRSRKFEGNEGGSQKQ 1090


>gi|195064329|ref|XP_001996546.1| bt [Drosophila grimshawi]
 gi|193892092|gb|EDV90958.1| bt [Drosophila grimshawi]
          Length = 8844

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 29/214 (13%)

Query: 464  LLEMSRQRIRSSVLESTT-KVCTYCKGAGYIRSQSS----------VALSILRSVEEY-- 510
            L+++ RQR RSSV    T +        G +                A  +L++      
Sbjct: 1170 LMDIIRQRRRSSVRNLMTKEPIRNESFLGVVLKPVIRDAKEQAEPQQAKQLLKANATEQF 1229

Query: 511  --LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--------RFGVSINVVIGIELAD 560
                   A    +     +   + + KR  + +YE              I +    +   
Sbjct: 1230 NPTKASKAQISDLKKPEGLATLVDDYKRPQLEKYERTDIEKSKPEKTTPIIIPPEPQ-KT 1288

Query: 561  KLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                I ++         +  +  +  + P  +   E        +P  +   +       
Sbjct: 1289 PELKISDENQKDDKPKMSKMQPPAPGEPPKIEVIREKRPSLAPEVPSRRGSLVPPADTGR 1348

Query: 620  VSEESTGVIRKRRRRR----RRRRPATDHHDAGV 649
                     +K R       RRRRP+ D     V
Sbjct: 1349 RPSLIINDEKKLRPGEVMDTRRRRPSIDVRRPSV 1382


>gi|195161703|ref|XP_002021701.1| GL26649 [Drosophila persimilis]
 gi|194103501|gb|EDW25544.1| GL26649 [Drosophila persimilis]
          Length = 2957

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 34/148 (22%), Gaps = 1/148 (0%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E      +  +      +     +    +     DE             +          
Sbjct: 1178 EATPAAPSFSHPKKSPITKPLKKNLLTQMRQEESDEEAHTQEAETVAPTVPPVPAPPPLA 1237

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             +  ++R+RR           +G  +   ++   +  + +  +E          E     
Sbjct: 1238 VLEERQRKRRSSEDAKDSKESSGSEAPP-AVSEKLKRNNEQDIEEEADQTARAKEKHLQT 1296

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDPIV 713
              +    S+P       E      DP  
Sbjct: 1297 NQKLPSPSLPVKEKIVSEPPIKQRDPSP 1324


>gi|306830583|ref|ZP_07463750.1| translation initiation factor IF2 [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325977562|ref|YP_004287278.1| translation initiation factor IF-2 [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|304427301|gb|EFM30406.1| translation initiation factor IF2 [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325177490|emb|CBZ47534.1| Translation initiation factor IF-2 [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 908

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 61/194 (31%), Gaps = 6/194 (3%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
           L +    +VEY    G+++        + +   +++     +            +  S  
Sbjct: 13  LGKSSKEVVEYAQELGLAVK---SHSSSVEESDVKRIVAKFSDKPQSTPAKPKVEKASEK 69

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV---IRKRRRRRRRRRPATDHHDAG 648
              +      A    P+S + +  ++     E+        K+RR  +RR   ++ +D  
Sbjct: 70  TVAQAPKATPATPAKPQSRNFKAEREARAKAEAERRANGGDKKRRNDQRRDDRSNRNDRQ 129

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             +  +  QN  D +   +       N +           ++      +   +    +  
Sbjct: 130 GNAQNNRKQNKRDRNSQNHNRRDQRDNRHDNRQQPAKPRVDFKARAAAIKAEQNAEYSRQ 189

Query: 709 SDPIVKKTRWWKRR 722
           S+  + +    KR+
Sbjct: 190 SENRIHEQENAKRK 203


>gi|195126835|ref|XP_002007874.1| GI12133 [Drosophila mojavensis]
 gi|193919483|gb|EDW18350.1| GI12133 [Drosophila mojavensis]
          Length = 1847

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 36/163 (22%), Gaps = 28/163 (17%)

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR----------------- 631
                ++   ++ + +   +S   +  +     +E     R R                 
Sbjct: 327 KEVNPVKNSDKETSGVSSKESSKDQSKRSREAPQEHKDKQRDRFKDRQRERSRESRKDSS 386

Query: 632 --RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN---------HNLLE 680
             R + R R    D          SS      +S +                        
Sbjct: 387 KERPKERSRELFRDTKRERSKERHSSRSKERKESSNSKQRKGSKERMDCSNGKQMERSKN 446

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   N D           E +++S     + +    +R+
Sbjct: 447 KRERSKERNSDKQREHPKEKRREDNSTSRSIEKRSSATRDKRR 489


>gi|195116391|ref|XP_002002739.1| GI11272 [Drosophila mojavensis]
 gi|193913314|gb|EDW12181.1| GI11272 [Drosophila mojavensis]
          Length = 2942

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 5/226 (2%)

Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK--RATIVEYEARFGVSI 550
           I    + A  + +   E   +                  +++K  ++     E  + V +
Sbjct: 583 IAEDETNANIVEKESAEKPAEDVTEKTEEPKPISNEQKHVDEKPEKSVEESVEQMYKVRV 642

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
                  +      IE             K          D     +  +      PK E
Sbjct: 643 IETSNESVEIVKKIIEAEKTDVKDELETRKKVESVVEKVKDDIN--LNMNHVGKEEPKEE 700

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
           ++++      ++ +  V   +       +  ++  D+   S V+S    +  + +     
Sbjct: 701 TIKEAAVAADNDTAPKVEPLKPSIAENIKLISNETDSQKTSLVASSCESVKAAGNGAEAA 760

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           ++I   N     + G  E  + +    S P +  +  +  P   K 
Sbjct: 761 TNIDKSNETAVASEGN-ELAEPAAEINSKPRLTETVQNELPSTSKD 805


>gi|115842004|ref|XP_800457.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115931757|ref|XP_001177590.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 653

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 32/155 (20%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K            +   D         +    ++E        E+ ++   ++V   +  
Sbjct: 50  KAQHSPQKKREEKEEDGDDVMALLRGGLSSGMKNEETKSRRPVENEDEQNQSVVVTRTPK 109

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +    +                                    S        E      
Sbjct: 110 ATKSEETKEPDVPKKASDRQKETEDVAKKSAEEKTAGKRKEDTDSVTIKRPTNEETVDAA 169

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            ++   +    +  + E  N S +   KK    +R
Sbjct: 170 MDDKVKNGEKKNETKAEKGNGSKEGSSKKPVERRR 204


>gi|74197292|dbj|BAC30050.2| unnamed protein product [Mus musculus]
          Length = 544

 Score = 38.8 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 65/226 (28%), Gaps = 8/226 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
           V++NV     +   L   ++                     S  KN +   ++ +     
Sbjct: 172 VTVNVKKDK-VEKALKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENERE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + E   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
           S            + N  +  +   +EN D  +    +  + ++ +
Sbjct: 291 SKRSDTPLKRPRLDKNSPQEQSKKRSENSDKDLSRRRSSRLSTNGT 336


>gi|326924514|ref|XP_003208472.1| PREDICTED: LOW QUALITY PROTEIN: transcriptional regulator ATRX-like
            [Meleagris gallopavo]
          Length = 2479

 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 6/158 (3%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                   +   K  +       + + +  ++   L         E  ++     + T   
Sbjct: 1308 QTENIGDDENEKEDNSESNSEEEDSKKPRYRHRLLRHRLTVSDGESGEEKKGKPKETKEG 1367

Query: 629  RKRRRRRRRRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN----LLENG 682
            ++R RR+     + D    ++ V  +VS  ++          +     N        +  
Sbjct: 1368 KRRNRRKVSSDDSNDSEFHESAVSEEVSESEDDQRPRTRSAKKAEAEENQRSYKQKKKRR 1427

Query: 683  AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                 ++        S  E E ++ S  P   + +  K
Sbjct: 1428 RIKVPDDSSSENNNKSNSEDEENDDSKSPGKGRKKIRK 1465


>gi|297464035|ref|XP_002703055.1| PREDICTED: ankyrin repeat domain 12 [Bos taurus]
 gi|297489736|ref|XP_002697790.1| PREDICTED: ankyrin repeat domain 12 isoform 2 [Bos taurus]
 gi|296473733|gb|DAA15848.1| ankyrin repeat domain 12 isoform 2 [Bos taurus]
          Length = 2050

 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 5/172 (2%)

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKS 609
             +    +       +++    +      H V S  +     KN      D          
Sbjct: 889  TIKKNDDRDKSREKMDRKHDKEKPEKERHPVESKEKHLMEKKNKPSDNSDYTKSEKSKNK 948

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
            E   ++     S +S  +   +  +  R+   TD + A     +S  +   D+       
Sbjct: 949  EKDREVDKKDKSRDSVNISNSKHFQEERKSSITDSNKAQHEKTLSLKEKTKDEPLRTPDG 1008

Query: 670  PSDITNH----NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                          +        +          P+ +SS +S D   K+ R
Sbjct: 1009 KEKDKKDIDRYKERDKHKDKILSSSLKLKSEADKPKPKSSPASKDTRPKEKR 1060


>gi|327354487|gb|EGE83344.1| Pal1 cell morphology protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 633

 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 35/132 (26%), Gaps = 4/132 (3%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-- 612
            + L   +         +  +     V     + S DK               +S S   
Sbjct: 199 NLSLDTPVDKPSSSKGRRPALPRPENVPPSRPSLSDDKASSRRPARRPSKEESQSRSKGH 258

Query: 613 --EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
               I D     +     R +RR RR    +     +  +   +  +       +   +P
Sbjct: 259 GRPPIGDIFADPKEPSKSRNQRRPRRNSDSSLMDIPSRPIDPEAERRRRERRQRERDAKP 318

Query: 671 SDITNHNLLENG 682
            D  + +   NG
Sbjct: 319 KDGKSRSKRSNG 330


>gi|302501245|ref|XP_003012615.1| forkhead domain protein [Arthroderma benhamiae CBS 112371]
 gi|291176174|gb|EFE31975.1| forkhead domain protein [Arthroderma benhamiae CBS 112371]
          Length = 1233

 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 3/153 (1%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIRK 630
                 +  +  + P+ +K  E    DE +    KS+     E         ++      
Sbjct: 569 DQPDNEEPEASVERPTVEKESERSEADEPVKAKGKSQQQQRPEPKATVAEPGQAKRRGPG 628

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           R  +            A      +  +     +      P   T              + 
Sbjct: 629 RPPKDGIMSKRERAEIAREQKLAAKREANGAAAATAISPPPAGTTAGKKPAKTAKEPASA 688

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             + PP +   +   + S+ P+  + R + +RK
Sbjct: 689 SATAPPAAASAISPEDPSTAPVKVEKRKYTKRK 721


>gi|282902702|ref|ZP_06310595.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp.
           aureus C160]
 gi|282921384|ref|ZP_06329102.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp.
           aureus C427]
 gi|282315799|gb|EFB46183.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp.
           aureus C427]
 gi|282597161|gb|EFC02120.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp.
           aureus C160]
          Length = 534

 Score = 38.8 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/188 (9%), Positives = 33/188 (17%), Gaps = 14/188 (7%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-------------APS 589
           E R G   ++             E      A         +  Q                
Sbjct: 247 EQRNGFIQSLKDDPS-QSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEE 305

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                    +D+  +        + + D    +E       +   +  +           
Sbjct: 306 QRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKPGKEDNKPGKEDGNKPGKEDG 365

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                   N             D       +    G  +N        + P  E  N   
Sbjct: 366 NKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPG 425

Query: 710 DPIVKKTR 717
               KK  
Sbjct: 426 KEDNKKPG 433


>gi|323138232|ref|ZP_08073304.1| TolA protein [Methylocystis sp. ATCC 49242]
 gi|322396484|gb|EFX99013.1| TolA protein [Methylocystis sp. ATCC 49242]
          Length = 411

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 39/150 (26%), Gaps = 5/150 (3%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                IEK    + +                 +  +   + E + P P +    + +   
Sbjct: 133 QPEKKIEKPVEPKPVEAKPAPTPPAKPKAVAPEEKDEPKEAEVVKPKPPTRPKPEKEAKE 192

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                     ++ +   R  P T+      +         + +S     +P+   N +  
Sbjct: 193 TP---APRPPEKPKTEPRTEPKTEAKTEPRLKTDEVA--KLLESKKHEEKPAKAENPDGE 247

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
            +                   + ++S+ ++
Sbjct: 248 ASDKKAKGAKPKSGDEAAPKSKFDASSIAN 277


>gi|118358423|ref|XP_001012457.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila]
 gi|89294224|gb|EAR92212.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 2678

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 17/172 (9%)

Query: 555  GIELADKLFYIEKGSPVQALVNT-----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                    +  ++        +        K GS     +  +  E            ++
Sbjct: 2413 DNRERKPKYNNDRRQQDSEDEDEYDVGYKTKEGSHIDEFTRKRREEKNMDKLDNQNNAQN 2472

Query: 610  ESLEDIQDNIVSEE--STGVIRKRRRRRRRRRPATDHHD----AGVVSDVSSIQNVIDDS 663
            E  EDI   I  +   S      +R + R +R      +    +G         N +   
Sbjct: 2473 EDDEDIVQKIKEDSDFSDEEEENQRSKYRNKRGGGGGQNFSRGSGNQGGNKYTGNQLRKK 2532

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             D   +P    N +  +    G  +         +  + E       P  KK
Sbjct: 2533 NDDDYQPRQRENDDQKKRNFQGERKF------NENQNQGEKREYEKKPYEKK 2578



 Score = 38.0 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 5/134 (3%)

Query: 593  NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA----TDHHDAG 648
              +   Q +         + +  + +  ++       K++R  R R+P         D+ 
Sbjct: 2372 KKKDDTQKQNEKKESDQSNNKQERKDQPAKGGDNKDFKKKRDNRERKPKYNNDRRQQDSE 2431

Query: 649  VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
               +        + S             N+ +       +N D     V   + +S  S 
Sbjct: 2432 DEDEYDVGYKTKEGSHIDEFTRKRREEKNMDKLDNQNNAQNED-DEDIVQKIKEDSDFSD 2490

Query: 709  SDPIVKKTRWWKRR 722
             +   +++++  +R
Sbjct: 2491 EEEENQRSKYRNKR 2504


>gi|224098363|ref|XP_002199379.1| PREDICTED: ring finger protein 12 [Taeniopygia guttata]
          Length = 595

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 4/118 (3%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                  D  F +E                  S  PS  +++E    D  +         
Sbjct: 127 RTNPNSGDFRFSLEINVNRNNGNTNPETENEPSVEPSNGEDLENSQSDSEIPRSESPSVR 186

Query: 613 EDIQDNIVSEE---STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
           +   +   +EE         + +RR R R P              S  N + ++    
Sbjct: 187 QPGSERSSAEELTAEEASPPRGQRRARSRSPE-QRRTRARTDRSRSPINAVSEAPRRS 243


>gi|195503574|ref|XP_002098707.1| Moca-cyp [Drosophila yakuba]
 gi|194184808|gb|EDW98419.1| Moca-cyp [Drosophila yakuba]
          Length = 970

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 34/145 (23%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
               S  +        +   QD        S   +          ++   ++R    R+R
Sbjct: 601 RGSPSGDRRRQQRSRSQNRRQDSPGQRRQMSPGRKRQDSPGRKRPNSTERKRRDSLERKR 660

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
             + D       +                 +  D  +  + ++              P  
Sbjct: 661 DDSNDRKRESSANWKREDSPGRKRKDSANRKREDSQDKKIQDSHKQEDAAGKKRGDSPSK 720

Query: 699 TPEMESSNSSSDPIVKKTRWWKRRK 723
             +         P+ ++    +RRK
Sbjct: 721 KRKDSDKKRQDSPVKRQESPGRRRK 745


>gi|163743212|ref|ZP_02150594.1| hypothetical protein RG210_14965 [Phaeobacter gallaeciensis 2.10]
 gi|161383629|gb|EDQ08016.1| hypothetical protein RG210_14965 [Phaeobacter gallaeciensis 2.10]
          Length = 227

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 33/152 (21%), Gaps = 1/152 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+G P     N       +   P    +     +  + L   ++           +    
Sbjct: 65  ERGKPA-RRANGAAPTAPNGATPEQPADRAEADKLSSALAAAEAARRAAEAKAEKAVLKA 123

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               ++         A           V +      +      +      HN  +     
Sbjct: 124 KKSARKAAALAEEFAAAKVKAKAKAKRVKAKAKRAIEKEKAKAKAILEAKHNPKKEAPKK 183

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            +   D S    +       +    PI KK  
Sbjct: 184 DSGKKDPSRKEPTKKVAAKRDGVKKPIAKKQG 215


>gi|332212432|ref|XP_003255323.1| PREDICTED: uncharacterized protein C10orf12-like [Nomascus
            leucogenys]
          Length = 1249

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 35/163 (21%), Gaps = 1/163 (0%)

Query: 561  KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
                ++         +            +  +              P +          +
Sbjct: 1083 PKAEVQSKRKRTEGSSPPDSKNKGPAVRASKEKHADGATKTPAAKRPAARDRSSQPPKKM 1142

Query: 621  SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
            S +   V   ++   +   P+    +        SI +             + +     +
Sbjct: 1143 SLKENKVKIPKKSAGKSCPPSRKEKENTHKRPSQSIASETLAKPAKQKGAGESS-SRPQK 1201

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                  +     + P   TPE  ++        K      +R+
Sbjct: 1202 ATNRKQSNGKTRARPSTKTPESSAAQRKRKLKAKLDSSHSKRR 1244


>gi|242022019|ref|XP_002431439.1| ngd5/osm-6/ift52, putative [Pediculus humanus corporis]
 gi|212516727|gb|EEB18701.1| ngd5/osm-6/ift52, putative [Pediculus humanus corporis]
          Length = 646

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/181 (6%), Positives = 33/181 (18%), Gaps = 16/181 (8%)

Query: 546 FGVSINVVIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
             +++ +                     +             +      + +   +    
Sbjct: 412 HDLAVELREDPNAEEKTPTQKRRPRRRREDPDAEEKTPTQKRRPRRRRGDPDAEEETPTQ 471

Query: 604 LPIPKSESLEDIQDNIVS------------EESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
              P+    +   +                 ++      ++RR +RRR   D  +     
Sbjct: 472 KRRPRRRREDPNAEEETPTQKRRPRRRRGDPDAEEKTPTQKRRPQRRRGDPDAEEETPTQ 531

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST--PEMESSNSSS 709
                +   D   +               +             P      P  E    + 
Sbjct: 532 KRRPRRRRGDPDAEEETPTQKRRPRRRRGDPDAEEETPTQKRRPQRRRGDPNAEEETPTQ 591

Query: 710 D 710
            
Sbjct: 592 K 592


>gi|169616732|ref|XP_001801781.1| hypothetical protein SNOG_11541 [Phaeosphaeria nodorum SN15]
 gi|160703251|gb|EAT81249.2| hypothetical protein SNOG_11541 [Phaeosphaeria nodorum SN15]
          Length = 483

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 62/240 (25%), Gaps = 14/240 (5%)

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
           G I  +++V L + +   E   +        +T S     + + K           G   
Sbjct: 245 GAILEKNAVNLEVTKRWNELPDEEKEVRFSHNTGS-----MEDYKIELAEYLAKAGGKVA 299

Query: 551 NVVIGIELADKLF-------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603
           +V I  +L+D           ++  +  +        V + S      +  +      A 
Sbjct: 300 DVHIDEDLSDAEDVEMADVGTVDSDASSEDEEEPPVVVKAPSPPAKTPRPNKRQKTVAAA 359

Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663
                +                   R   +       ++    A    D      +   +
Sbjct: 360 ATNGAAVPSTPAPAKDTPVPIPSSSRPTTQVPAPVPASSVEAPAAAKKDSKKKAKLAAPA 419

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                   + T  +  +      +          +  + E++ + +    K+ R   +RK
Sbjct: 420 PIAPAPTKEATPDDTSKTAKKAKSSRSTRGAE--AEIDKENAAAGAGEKKKEKRDRSKRK 477


>gi|67538118|ref|XP_662833.1| hypothetical protein AN5229.2 [Aspergillus nidulans FGSC A4]
 gi|40743220|gb|EAA62410.1| hypothetical protein AN5229.2 [Aspergillus nidulans FGSC A4]
 gi|259484690|tpe|CBF81127.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 883

 Score = 38.8 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 9/151 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           KG+  +   N      +       D+      ++E       S    D  +N  S    G
Sbjct: 338 KGARGRRRKNLEPTEEAAVTERDSDEPSATPVEEEVAADNDASRENLDSPENQPSGIDKG 397

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +KR  R RR   +    +        S  +      +  ++ ++              
Sbjct: 398 --KKRAGRPRRHIRSPTPSE-------DSAMSKRKRQHEKDLDRAETRPEQEQPAATARS 448

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           ++         S+P  E       P V+++R
Sbjct: 449 SKKRKQHNEHESSPRQEQDEPGPQPEVERSR 479


>gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
 gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
          Length = 792

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 37/166 (22%), Gaps = 14/166 (8%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E E R                 F +E+    Q       +   +  A       +    
Sbjct: 430 AEVEKR-------KAEHAKERHDFRLERLEREQQEKAEAMRRKKEEIARKKADANKAASS 482

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
           D+       +           SE       K+R   R    A +      ++   +    
Sbjct: 483 DKPEQDAIAAAVAR-------SEARKAEKAKQRAGTRTDNNAANDAKQAAIAAAKARAKA 535

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
             +  D     ++      +E       +    S    S  +   S
Sbjct: 536 NTEGSDSAKSQAEAAKQAAIEAAKKRAQQQAQPSASDKSADDARKS 581


>gi|114582001|ref|XP_001157523.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 896

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +  + E  +  +  
Sbjct: 706 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 751

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        S    D    +  +        +++R
Sbjct: 752 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 811

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++      +  S      D S    M        ++ +  +NGA    E   
Sbjct: 812 GERRNSFSENERHTHRNKDSENFRRKDRSKSREMNRKHSGSRSDEDRYQNGAERRWEKSS 871

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 872 RYSEQSRESKKNQDRRREKSPAKQK 896


>gi|3236351|gb|AAC32042.1| PRP4 protein kinase homolog [Mus musculus]
          Length = 823

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 33/149 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q  V        +         I+   +   +    +  S +      + ++S    
Sbjct: 63  RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 122

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ +R                +     + S       S        +        
Sbjct: 123 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 182

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +     S      S + S     K+R
Sbjct: 183 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 211


>gi|18859937|ref|NP_573229.1| CG8289 [Drosophila melanogaster]
 gi|7293368|gb|AAF48746.1| CG8289 [Drosophila melanogaster]
 gi|15292051|gb|AAK93294.1| LD36501p [Drosophila melanogaster]
 gi|220946046|gb|ACL85566.1| CG8289-PA [synthetic construct]
 gi|220955840|gb|ACL90463.1| CG8289-PA [synthetic construct]
          Length = 336

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 41/153 (26%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                V          +A +   +     +   +       +  D+  +  S      I+
Sbjct: 64  TSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDSDDDANHSDVDPSADSSPRKPNIK 123

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           ++ RR  R      +         +   + I          S + N   +         +
Sbjct: 124 RQTRRSVRGETEDSNELPSTSKASAHASSPIKKRKLSRASTSSVKNGKKVAEKDSESDVD 183

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                   + P+  ++ S S P  KK +   RR
Sbjct: 184 AGTEDEKSAQPQKVAAKSKSSPNAKKAKGRGRR 216


>gi|268564430|ref|XP_002639104.1| Hypothetical protein CBG14923 [Caenorhabditis briggsae]
 gi|187027557|emb|CAP33327.1| hypothetical protein CBG_14923 [Caenorhabditis briggsae AF16]
          Length = 1423

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 20/92 (21%)

Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655
                + +    ++      +      ES+G   +RR+  R+R             + S 
Sbjct: 304 EQKTSKRVKKEVENSPDYRTKKIKEEVESSGDEDQRRKESRKRARHDSESPVRNRRNSSE 363

Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
                        E    +             
Sbjct: 364 KPKTRRRHDSSEDERRSRSPVQKRRKSPEKNH 395


>gi|320581186|gb|EFW95407.1| hypothetical protein HPODL_2741 [Pichia angusta DL-1]
          Length = 494

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 37/145 (25%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                 T  K   +S+A       E   ++        +    +  D+   ++      K
Sbjct: 232 DSLASRTRRKSKDESRAKEVQPEEEAEAKEGVRTRRRVAMEPAEASDDEKDKQKEAEPEK 291

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             +RR  R+P TD        + +                       +  +      +  
Sbjct: 292 TPKRRVSRKPRTDEESESEEKEKAPQSGRKKRVKLKEEAAETEETMGVQSSSDEEEKKGT 351

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKK 715
                 V   +   + ++   + K+
Sbjct: 352 QTRRKSVREEKKPRTRTTRRNLKKE 376


>gi|310643858|ref|YP_003948616.1| hypothetical protein PPSC2_c4425 [Paenibacillus polymyxa SC2]
 gi|309248808|gb|ADO58375.1| hypothetical protein PPSC2_c4425 [Paenibacillus polymyxa SC2]
          Length = 287

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 32/145 (22%), Gaps = 11/145 (7%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
             ++     S  + PS  +    + + E        E                   ++R 
Sbjct: 143 QQDSAATEESRVEQPSEAREPRELQRREPKDAQEVRERQPREARESRPSREGREGNRQRE 202

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            R  R+P          S           S +           N   N     +      
Sbjct: 203 ARDSRQPREPREAKDGRS-----------SGEGQQAREPRRQRNPQGNFDKKESRGPRYD 251

Query: 694 IPPVSTPEMESSNSSSDPIVKKTRW 718
             P    E      S +P  ++ + 
Sbjct: 252 RQPKENREGRQVRVSREPEGQRQKN 276


>gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 683

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--ESLE 613
            EL      I +             + S    P             A  P P S   + E
Sbjct: 572 PELEIPDMPIIRRIKRARGQLEPAALTSPPVKPREPAEKAPAKARSAEAPRPVSAGPNAE 631

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
            +      +  +     R  +RRRRR        GV ++  ++ +   ++ D
Sbjct: 632 PVVAASAPKTDSETAEARSAKRRRRRRKPTGEGRGVQAETETVSDQAPETVD 683


>gi|71019085|ref|XP_759773.1| hypothetical protein UM03626.1 [Ustilago maydis 521]
 gi|46099213|gb|EAK84446.1| hypothetical protein UM03626.1 [Ustilago maydis 521]
          Length = 773

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 14/166 (8%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
            E +     I++ +      +  H               +    D+       SE   D 
Sbjct: 329 PEASTPDEKIKRSATSDDTKSEPH--------------DDDEGSDDERQEEDLSEPESDA 374

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
             +  S       R+ +     R         G    +S  +     + D      +   
Sbjct: 375 DVSKDSTHKRRSNRRGQDAIEPRTKIKRGEARGTAEALSDAEQTSKHAEDDADSVGENGR 434

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              +            +S     TP    S S +    + TR  +R
Sbjct: 435 SERVPKRRGSRHAPTALSRTSRQTPASRKSTSGNVTPTQSTRRGRR 480


>gi|67904250|ref|XP_682381.1| hypothetical protein AN9112.2 [Aspergillus nidulans FGSC A4]
 gi|40742755|gb|EAA61945.1| hypothetical protein AN9112.2 [Aspergillus nidulans FGSC A4]
          Length = 917

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/270 (9%), Positives = 60/270 (22%), Gaps = 28/270 (10%)

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT- 523
           L     ++   +    T           +R +       LR   E +       + +   
Sbjct: 277 LSGEMDQVLEHLRTLLTNPSFVPLEEVEVRDEEIKR---LREGWEKMESRWRQAVTMMDG 333

Query: 524 -HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
            H  +          ++   E R G+ +N  +    +               + +     
Sbjct: 334 WHKRIA-----HGGGSVRAEELRMGLKLNDHVDPRYSQ-------VRDNDVAMPSPIFED 381

Query: 583 SDSQAPSY-DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641
            + +   Y          ++   P P        +      ++T   +   R+       
Sbjct: 382 QEDEEDEYFGVEATETEPNDDAEPAPDEPQETSSRALKERTDNTASAKHPPRKEVSFTEK 441

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV--------- 692
                +    +  ++      S  +   PS           A                  
Sbjct: 442 DRKSPSKKQQEDDTMPIKAHQSDAVTRRPSRKRVEPKGPRPAPTRMSVPQKLAAAESEAR 501

Query: 693 -SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            +       E    +  S    KKT   +R
Sbjct: 502 AAEKARQEQESRKRSRGSKVARKKTGDRRR 531


>gi|40714595|gb|AAR88555.1| LD10678p [Drosophila melanogaster]
          Length = 2558

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/188 (9%), Positives = 53/188 (28%), Gaps = 5/188 (2%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
            N+   ++ + E R  +          EL  K   ++K    +   ++     S      
Sbjct: 653 KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 712

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD--- 646
             K      + +        +  +  Q    + ++  +    +  ++             
Sbjct: 713 EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 772

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
             V    S +    + S D+  + +      +  +     +    +++   +T    SS 
Sbjct: 773 KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 832

Query: 707 SSSDPIVK 714
               P+ +
Sbjct: 833 IDKKPLEQ 840


>gi|47226837|emb|CAG06679.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 933

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 40/172 (23%), Gaps = 9/172 (5%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ-- 616
           +      ++ SP         +   + +     +      +DE      K    +D    
Sbjct: 221 SSPHRRSDRSSPSHRHSRGRERFRGERERSPPAQERRHDRRDETRSKREKDSIRDDRDYD 280

Query: 617 -------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                  D     ++     +R  R R R    D  D+    D    +     S +    
Sbjct: 281 SELLSSRDTRGERDTRESRDRRDARERGRETTRDSRDSRDAKDSRESRTDTRSSRESLGS 340

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  +  ++         D S         +   S      ++     R
Sbjct: 341 RERERERDREKDRERDKERERDRSDTQRKEDTAQEDRSYGRGHGREDTKTDR 392


>gi|26337239|dbj|BAC32304.1| unnamed protein product [Mus musculus]
          Length = 545

 Score = 38.8 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 65/226 (28%), Gaps = 8/226 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
           V++NV     +   L   ++                     S  KN +   ++ +     
Sbjct: 172 VTVNVKKDK-VEKALKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENERE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + E   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707
           S            + N  +  +   +EN D  +    +  + ++ +
Sbjct: 291 SKRSDTPLKRPRLDKNSPQEQSKKRSENSDKDLSRRRSSRLSTNGT 336


>gi|115970763|ref|XP_001187475.1| PREDICTED: similar to PARD3 protein [Strongylocentrotus purpuratus]
          Length = 1510

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 8/223 (3%)

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
             R  +E + +  A       H  +   +   + A I E E +  +S        +  +  
Sbjct: 980  ERLEQEEVERRKARQQAKQEHEKIQEEIQKLREAKIKE-ENQEALS---KADKMMQLRQQ 1035

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            Y ++    Q       +   D        + +        L   ++E  E  + N    E
Sbjct: 1036 YQQRHLDNQGQYIDDGEEDEDDYTRVDPNSHQETMSQTQRLEAARAEQRERERQNSRVPE 1095

Query: 624  STGVIRKRRRRRRRRRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE- 680
                 R  +    RR+   D    +     D  +  N   D                   
Sbjct: 1096 RDRYERLPQEAEDRRKERRDDIYSEPKDRRDDRTSNNRYSDDPYADPRTLRNGQDQGRNY 1155

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK-TRWWKRR 722
            +  +G   + DV   P      +  + + +P   +  R    R
Sbjct: 1156 DDRYGRRNDRDVEENPYVRYNGKKDHGAQEPRDGRHDRNRDNR 1198


>gi|6979936|gb|AAF34661.1|AF221715_1 split ends long isoform [Drosophila melanogaster]
          Length = 5554

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%)

Query: 77   DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
            D  Q     R+  L+E    + D+     ++   D+        E+     +  ++  E 
Sbjct: 1991 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2048

Query: 137  SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
                      +   + +G           ++  +    +   +  +     +        
Sbjct: 2049 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2108

Query: 197  TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
                   G      P+ +  +  SRK++     +  K      E     G      G+S 
Sbjct: 2109 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2164

Query: 257  TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
                            ++                         E+ N      R   C  
Sbjct: 2165 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2224

Query: 307  ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364
             S           +               +    DP        +  E +L S HQ +  
Sbjct: 2225 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2283

Query: 365  LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419
                 +     + +            RE      A  TN +      +    R +     
Sbjct: 2284 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2343

Query: 420  -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
                   +         +  + + RSVE+  K S   D             L+ +S    
Sbjct: 2344 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2401

Query: 473  RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
              +   S           C        +++      ++ R  EE   +  A    +    
Sbjct: 2402 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2457

Query: 526  DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583
                   +    +  E+E R   +                        +          S
Sbjct: 2458 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2514

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638
            D++    D        D   +   +         +  SE+       +     +R     
Sbjct: 2515 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2574

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            R A+D       +   +I+     +    ++   +++        H    + +       
Sbjct: 2575 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2634

Query: 699  TPEMES 704
                  
Sbjct: 2635 REIKTE 2640


>gi|317125572|ref|YP_004099684.1| transcription termination factor Rho [Intrasporangium calvum DSM
           43043]
 gi|315589660|gb|ADU48957.1| transcription termination factor Rho [Intrasporangium calvum DSM
           43043]
          Length = 728

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 3/126 (2%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
           G P +A            + P   +  +    D      P+ +  E              
Sbjct: 145 GQPDRAQRAAEAVAAVSERQPLDRRAGDRPEADRPETDRPEVDRPEHEGRRQRERRDRRD 204

Query: 628 IRKRRRRRRRRRPATDHHD---AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            ++ R  R   +  T   +    G   +  + Q+   +       P   T   + E    
Sbjct: 205 RQQERDTRGNAQEPTSRQERNPRGANQERDTRQDARPERDPRGTSPERDTRDTIQERDGR 264

Query: 685 GFTENY 690
                 
Sbjct: 265 QDARQE 270


>gi|24580579|ref|NP_722615.1| split ends, isoform A [Drosophila melanogaster]
 gi|46397733|sp|Q8SX83|SPEN_DROME RecName: Full=Protein split ends
 gi|10727421|gb|AAF51535.2| split ends, isoform A [Drosophila melanogaster]
          Length = 5560

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%)

Query: 77   DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
            D  Q     R+  L+E    + D+     ++   D+        E+     +  ++  E 
Sbjct: 1997 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2054

Query: 137  SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
                      +   + +G           ++  +    +   +  +     +        
Sbjct: 2055 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2114

Query: 197  TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
                   G      P+ +  +  SRK++     +  K      E     G      G+S 
Sbjct: 2115 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2170

Query: 257  TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
                            ++                         E+ N      R   C  
Sbjct: 2171 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2230

Query: 307  ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364
             S           +               +    DP        +  E +L S HQ +  
Sbjct: 2231 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2289

Query: 365  LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419
                 +     + +            RE      A  TN +      +    R +     
Sbjct: 2290 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2349

Query: 420  -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
                   +         +  + + RSVE+  K S   D             L+ +S    
Sbjct: 2350 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2407

Query: 473  RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
              +   S           C        +++      ++ R  EE   +  A    +    
Sbjct: 2408 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2463

Query: 526  DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583
                   +    +  E+E R   +                        +          S
Sbjct: 2464 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2520

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638
            D++    D        D   +   +         +  SE+       +     +R     
Sbjct: 2521 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2580

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            R A+D       +   +I+     +    ++   +++        H    + +       
Sbjct: 2581 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2640

Query: 699  TPEMES 704
                  
Sbjct: 2641 REIKTE 2646


>gi|326673460|ref|XP_700327.4| PREDICTED: moesin [Danio rerio]
          Length = 577

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 48/156 (30%), Gaps = 6/156 (3%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                        +A + ++  +   +   L    K     + +   ++ E+  ++ + R
Sbjct: 291 RRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLR 350

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +   + + A +  +      +   +       +      D      ++      +EN   
Sbjct: 351 QIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTK 410

Query: 693 SIPPVSTPEMESSN------SSSDPIVKKTRWWKRR 722
           +   ++T   E ++       +      + R W+RR
Sbjct: 411 NKDNLATELAELTSKINLLEDAKKKKEDEARKWQRR 446


>gi|194678116|ref|XP_870680.2| PREDICTED: ankyrin repeat domain 12 isoform 2 [Bos taurus]
 gi|297489734|ref|XP_002697789.1| PREDICTED: ankyrin repeat domain 12 isoform 1 [Bos taurus]
 gi|296473732|gb|DAA15847.1| ankyrin repeat domain 12 isoform 1 [Bos taurus]
          Length = 2027

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 5/172 (2%)

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKS 609
             +    +       +++    +      H V S  +     KN      D          
Sbjct: 866  TIKKNDDRDKSREKMDRKHDKEKPEKERHPVESKEKHLMEKKNKPSDNSDYTKSEKSKNK 925

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
            E   ++     S +S  +   +  +  R+   TD + A     +S  +   D+       
Sbjct: 926  EKDREVDKKDKSRDSVNISNSKHFQEERKSSITDSNKAQHEKTLSLKEKTKDEPLRTPDG 985

Query: 670  PSDITNH----NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                          +        +          P+ +SS +S D   K+ R
Sbjct: 986  KEKDKKDIDRYKERDKHKDKILSSSLKLKSEADKPKPKSSPASKDTRPKEKR 1037


>gi|153104|gb|AAA26676.1| protein A (ttg start codon) [Staphylococcus aureus]
          Length = 524

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 41/177 (23%), Gaps = 2/177 (1%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     +  K    E      A            +  +     E   +   
Sbjct: 294 EQRNGFIQSLKDDPSV-SKEILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGK 352

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                  +   +      + +       +  +   ++P  +  +     D         +
Sbjct: 353 EDNNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGN 412

Query: 663 SFDMYMEPSD-ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + N +     G T N        +  ++ + N  +D  + K   
Sbjct: 413 KPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 469


>gi|170037615|ref|XP_001846652.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167880863|gb|EDS44246.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 538

 Score = 38.8 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 39/160 (24%), Gaps = 6/160 (3%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K    ++ V   ++    S     DK  +     +        ES    +    + +   
Sbjct: 148 KERADRSPVRKRYEDSDASPPRRKDKERDKRDARKERRKYSSDESPPRRKSKSPARKRYS 207

Query: 627 VIRKRRRRRRRR------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                  R+R +      + +   HD+       S  N   DS                E
Sbjct: 208 DSDPSPPRKRDKHWDEPSKGSRRGHDSDQSPPRKSRSNRRRDSDASPPRRRHDQVKIKQE 267

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                 +        P    + E  +S   P  K  R   
Sbjct: 268 RRDSDESPPRRGREIPQVRIKQEPPDSDESPPRKPNRRRD 307


>gi|293360021|ref|XP_001055856.2| PREDICTED: CWC22 spliceosome-associated protein homolog isoform 1
           [Rattus norvegicus]
          Length = 876

 Score = 38.8 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 36/155 (23%), Gaps = 4/155 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++    +       +  + +   +  ++      ++       S      +     E   
Sbjct: 722 QRHQEGRTERARSERHRAQNSRDADWRDPPAKHMEDRSHENSYSRVGNGREQGSHREPED 781

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN----HNLLEN 681
                +++RR RR   +++      +  S      D S                 +  +N
Sbjct: 782 RHGEPKKKRRERRDSFSENEKQRTRNQDSDNVRRKDRSKSRERSRKHSGRKGDDDDRYQN 841

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           GA    E            +            K  
Sbjct: 842 GAERRWEKPSRYAEHSRESKRSQDRRREKSPTKHK 876


>gi|115893502|ref|XP_785679.2| PREDICTED: similar to PARD3 protein, partial [Strongylocentrotus
            purpuratus]
          Length = 1508

 Score = 38.8 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 8/223 (3%)

Query: 504  LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
             R  +E + +  A       H  +   +   + A I E E +  +S        +  +  
Sbjct: 978  ERLEQEEVERRKARQQAKQEHEKIQEEIQKLREAKIKE-ENQEALS---KADKMMQLRQQ 1033

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            Y ++    Q       +   D        + +        L   ++E  E  + N    E
Sbjct: 1034 YQQRHLDNQGQYIDDGEEDEDDYTRVDPNSHQETMSQTQRLEAARAEQRERERQNSRVPE 1093

Query: 624  STGVIRKRRRRRRRRRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE- 680
                 R  +    RR+   D    +     D  +  N   D                   
Sbjct: 1094 RDRYERLPQEAEDRRKERRDDIYSEPKDRRDDRTSNNRYSDDPYADPRTLRNGQDQGRNY 1153

Query: 681  NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK-TRWWKRR 722
            +  +G   + DV   P      +  + + +P   +  R    R
Sbjct: 1154 DDRYGRRNDRDVEENPYVRYNGKKDHGAQEPRDGRHDRNRDNR 1196


>gi|301622007|ref|XP_002940332.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Xenopus
           (Silurana) tropicalis]
          Length = 465

 Score = 38.8 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 48/151 (31%), Gaps = 3/151 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +   +   K     +    +       + +  +   K++  ++ +D    E+     
Sbjct: 271 KEEERDTDKKFKTRKFEKENIKEDRCATGKKSDGEVGEEKTKKDKEYRDKDYREKDYRDK 330

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI--DDSFDMYMEPSDITNHNLLENGAHGF 686
              R RR+R +  + +H+          +         + Y +  D+      +      
Sbjct: 331 EYDRERRQRDKEKSRYHEDDRRKPRDRYEKDRCFRRREEDYRKERDLVKEKTRKQDVTES 390

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
            ++ D S   ++  E +  ++  D I  K R
Sbjct: 391 PQSTDKS-ERIAREEKKEDSAKRDRIRNKDR 420


>gi|256820186|ref|YP_003141465.1| outer membrane chaperone Skp (OmpH) [Capnocytophaga ochracea DSM
           7271]
 gi|256581769|gb|ACU92904.1| outer membrane chaperone Skp (OmpH) [Capnocytophaga ochracea DSM
           7271]
          Length = 364

 Score = 38.8 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/200 (8%), Positives = 50/200 (25%), Gaps = 2/200 (1%)

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
           L      +     + D+   L   +       E R           E     +  E+   
Sbjct: 167 LRALKKKDNAEDRNKDMAQLLK--ESYDFEFVEERVKKRKEAEKAREQRRVQYEQERLRK 224

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            + +     ++ +  +    ++  +   + +AL    + E  E +Q      ++    R+
Sbjct: 225 TEEMKQQREQLKAKREKEQAERQQKFQQERDALKAQREKEQAERVQKFQQERDALKAQRE 284

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           + +  R+++            D    +              +I              E  
Sbjct: 285 KEQAERQQKFQQQRDSIKAQRDKEQTERQQKLQEQKEQREKEIAERQKKLEEQRVQREKE 344

Query: 691 DVSIPPVSTPEMESSNSSSD 710
                         + +++ 
Sbjct: 345 QAERLKKQQEARTQTPTTNQ 364


>gi|6467825|gb|AAF13218.1|AF188205_1 Spen RNP motif protein long isoform [Drosophila melanogaster]
          Length = 5533

 Score = 38.8 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%)

Query: 77   DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
            D  Q     R+  L+E    + D+     ++   D+        E+     +  ++  E 
Sbjct: 1997 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2054

Query: 137  SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
                      +   + +G           ++  +    +   +  +     +        
Sbjct: 2055 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2114

Query: 197  TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
                   G      P+ +  +  SRK++     +  K      E     G      G+S 
Sbjct: 2115 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2170

Query: 257  TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
                            ++                         E+ N      R   C  
Sbjct: 2171 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2230

Query: 307  ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364
             S           +               +    DP        +  E +L S HQ +  
Sbjct: 2231 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2289

Query: 365  LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419
                 +     + +            RE      A  TN +      +    R +     
Sbjct: 2290 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2349

Query: 420  -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
                   +         +  + + RSVE+  K S   D             L+ +S    
Sbjct: 2350 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2407

Query: 473  RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
              +   S           C        +++      ++ R  EE   +  A    +    
Sbjct: 2408 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2463

Query: 526  DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583
                   +    +  E+E R   +                        +          S
Sbjct: 2464 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2520

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638
            D++    D        D   +   +         +  SE+       +     +R     
Sbjct: 2521 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2580

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            R A+D       +   +I+     +    ++   +++        H    + +       
Sbjct: 2581 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2640

Query: 699  TPEMES 704
                  
Sbjct: 2641 REIKTE 2646


>gi|308507593|ref|XP_003115980.1| hypothetical protein CRE_09469 [Caenorhabditis remanei]
 gi|308250924|gb|EFO94876.1| hypothetical protein CRE_09469 [Caenorhabditis remanei]
          Length = 568

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 40/175 (22%), Gaps = 22/175 (12%)

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           GV I++    ++++    + +     +          D      D + +    D+ +   
Sbjct: 363 GVDIDLDSSDDMSESEDDMSESKDGSSESEDNMSESEDDMTEITDISSDGTSDDDEMANQ 422

Query: 607 PK----------------------SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
           P                       S S   +     +   +     RRR    R P   +
Sbjct: 423 PDFQGVNPGRQRSPQPQDRQNPATSHSPPPLNRRRPAPSRSPSPLNRRRPATSRSPQPQY 482

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
                 S      N    +     +P    N     +           S  P   
Sbjct: 483 RQNPAPSRSPLPLNRRRPATSRSPQPQYRQNPAPSRSPPPLHRRRAAPSRSPSPQ 537


>gi|189242212|ref|XP_967555.2| PREDICTED: similar to rCG61344 [Tribolium castaneum]
          Length = 952

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 50/197 (25%), Gaps = 25/197 (12%)

Query: 534 QKRATIVEYEARFGVSINVVIG----IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589
             R+ +   E R  +S+  +        ++D      K        N             
Sbjct: 21  HLRSHLDRIERRTALSLRPISQKCYADSMSDTELRRSKRQRKVQFENMSWLADDQMHKMG 80

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR----------------RR 633
           Y       + +E     P     E  +    S +     R+                  R
Sbjct: 81  YPNLNTPGYSEEDSRDAPDVRLEEPSRSTRHSNDVNSGKRREIKSPKYLYNYETNDVPPR 140

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           RRR      +        +   ++N  + +     E ++I   +     +   +E     
Sbjct: 141 RRRS-----EITSRSSERNQKELRNRRESNDKENNEETNINGRSSHSRSSKRTSEAAGED 195

Query: 694 IPPVSTPEMESSNSSSD 710
               S   +E  ++ S 
Sbjct: 196 SEKKSDDTVEDDSNDSK 212


>gi|218264756|ref|ZP_03478468.1| hypothetical protein PRABACTJOHN_04177 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221805|gb|EEC94455.1| hypothetical protein PRABACTJOHN_04177 [Parabacteroides johnsonii
           DSM 18315]
          Length = 995

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 4/198 (2%)

Query: 517 HNIIVHTHSDVVLYLLNQKRATIVE-YEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575
             ++          +  +K + I       F   I     I+L      +++        
Sbjct: 63  ERVVPERPHREASSVKEEKSSEIKTVIPEEFKPKIVTKGRIDLDRSHKKVQEVQHQPVSA 122

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
               KV    +A S  K  E   Q+        P+ +  E     +   E      + + 
Sbjct: 123 PVEKKVEKPVEATSATKTAEAPVQEVKAPEAKAPEVKEPEAKMPEVKVPEVKQQPEEIKE 182

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            +       +  +      V   +    +S  +  EP+    +   E      T  ++  
Sbjct: 183 EKVIVVEK-EPAEVIKPEPVQEPKAANVESTTVTAEPAAPAGNGSEEELFRLNTPKFESK 241

Query: 694 IPPVSTPEMESSNSSSDP 711
           I      ++ + N S+ P
Sbjct: 242 IKVTGKIDLNALNQSTRP 259


>gi|195014701|ref|XP_001984064.1| GH15212 [Drosophila grimshawi]
 gi|193897546|gb|EDV96412.1| GH15212 [Drosophila grimshawi]
          Length = 1192

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 50/188 (26%), Gaps = 13/188 (6%)

Query: 524  HSDVVLYLLNQKRATIVEYE-ARFGVSINV-------VIGIELADKLFYIEKGSPVQALV 575
            H      +  ++R      E  R    + +           + +      ++   V+   
Sbjct: 826  HVGRARRIDEEERTLRRRQEDEREAFKLKIAEQRKKREEEAQSSRDQLLAKRQEYVEKTK 885

Query: 576  NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
            N      + ++      +      D+ +     ++          +++      +++   
Sbjct: 886  NLLIIADAPTERERKKGSGRPRK-DDYITGTDSADGEPREGAERPAKKKRSKGERKKGSG 944

Query: 636  RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
            R+R+           SD  S     D+      +     N    +           VS  
Sbjct: 945  RKRK----SEKYESDSDEESAGGNRDNKSKQKKKKQQQKNAKESKEKLSAKQRLKIVSKE 1000

Query: 696  PVSTPEME 703
             +ST E E
Sbjct: 1001 TISTSESE 1008


>gi|195049195|ref|XP_001992669.1| GH24882 [Drosophila grimshawi]
 gi|193893510|gb|EDV92376.1| GH24882 [Drosophila grimshawi]
          Length = 6469

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 3/158 (1%)

Query: 553  VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
            +       +    E+ S      +       +S                A +     + L
Sbjct: 1366 IKDDHEKHESVKDERLSETPRRESVADSTKPESLKDDKSLPASKEASRPASVADSVKDKL 1425

Query: 613  EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
            E          +    R+    R +     D   A    +VS   +  +   D   +P  
Sbjct: 1426 EKHLGEQDDRSADPSRRESVADRSKPESLKDDKSAPPSKEVSRPASAAESVKDESEKPEV 1485

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
            +T+ +  E       E+    I P S  + +S + S +
Sbjct: 1486 VTDAHSKEPSRR---ESVAEIIKPESVKDDKSESVSKE 1520


>gi|24580581|ref|NP_524718.2| split ends, isoform B [Drosophila melanogaster]
 gi|10727420|gb|AAF51534.2| split ends, isoform B [Drosophila melanogaster]
          Length = 5533

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%)

Query: 77   DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
            D  Q     R+  L+E    + D+     ++   D+        E+     +  ++  E 
Sbjct: 1997 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2054

Query: 137  SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
                      +   + +G           ++  +    +   +  +     +        
Sbjct: 2055 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2114

Query: 197  TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
                   G      P+ +  +  SRK++     +  K      E     G      G+S 
Sbjct: 2115 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2170

Query: 257  TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
                            ++                         E+ N      R   C  
Sbjct: 2171 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2230

Query: 307  ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364
             S           +               +    DP        +  E +L S HQ +  
Sbjct: 2231 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2289

Query: 365  LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419
                 +     + +            RE      A  TN +      +    R +     
Sbjct: 2290 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2349

Query: 420  -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
                   +         +  + + RSVE+  K S   D             L+ +S    
Sbjct: 2350 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2407

Query: 473  RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
              +   S           C        +++      ++ R  EE   +  A    +    
Sbjct: 2408 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2463

Query: 526  DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583
                   +    +  E+E R   +                        +          S
Sbjct: 2464 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2520

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638
            D++    D        D   +   +         +  SE+       +     +R     
Sbjct: 2521 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2580

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            R A+D       +   +I+     +    ++   +++        H    + +       
Sbjct: 2581 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2640

Query: 699  TPEMES 704
                  
Sbjct: 2641 REIKTE 2646


>gi|291243503|ref|XP_002741641.1| PREDICTED: serine/threonine-protein kinase PRP4h-like [Saccoglossus
           kowalevskii]
          Length = 908

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 32/148 (21%), Gaps = 2/148 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
            +         H      +     ++     +  +             +     + S   
Sbjct: 191 IAAKHKRSRNRHSRSPSVERRRSKRSQSPRDKKHSRHRSASPRHKIRKRSKSPRKRSKSP 250

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            R R  R R R P          S     +N    S      P      + L       T
Sbjct: 251 KRNRSPRMRSRSPRKRSKSPKRRSKSPKRENRRRKSRSRSKSPIKKRPRSPLR--QPMQT 308

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                     +    ES  + S P ++ 
Sbjct: 309 TRQSPPRISPARRMSESPRNISTPQLQN 336


>gi|224013546|ref|XP_002296437.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968789|gb|EED87133.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 584

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 43/178 (24%), Gaps = 10/178 (5%)

Query: 551 NVVIGIELADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
            +             E+      +     G     D +  + D                 
Sbjct: 55  RIKAEEAKRRLEEADERYQAKVRERERAEGRGGSDDEEEGALDVGRTKASARGDDAMQQP 114

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
            ++ +D +     E+     R+++R +   +   D  +A    +    +  ++       
Sbjct: 115 HDNEDDSEHVDSDEDEETKRRRKKRAQEISQLRKDVTEAREARNQKEAERQVEKQKAEAK 174

Query: 669 EP----SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD----PIVKKTRW 718
                          E  +       D         E  ++  ++     P +KK R 
Sbjct: 175 RRELMGEVQAKQKEAEKESKKRHRESDEEEDHDDIEEDTTTLPAASVLTGPTIKKKRV 232


>gi|195111454|ref|XP_002000293.1| GI22604 [Drosophila mojavensis]
 gi|193916887|gb|EDW15754.1| GI22604 [Drosophila mojavensis]
          Length = 639

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 50/220 (22%), Gaps = 17/220 (7%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
            A  + +    ++ + +  +KR+   E        +       L        +    +  
Sbjct: 122 KASTVKIKQEPELPIKIKLEKRSNSRELSPTRRSPLR----EHLYSDQSPTRRRRSDEEK 177

Query: 575 VNTGHKVGSDSQAPSYDKNIE---CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
            N   +    S       + +      +D+   P       +D        +      +R
Sbjct: 178 PNKRERNVDQSPPRRRKNDDQSPPRRRRDDQSPPRRIKGDDDDQSPPRNRRDDNQSPPRR 237

Query: 632 RRRRR------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
           ++R         RR   DH            Q+     F+    P               
Sbjct: 238 KKRDNHDKSPPSRRRDDDHSPPRRKKRDDDDQSPPRRRFNADQSPPRRRKDADKSPPRRV 297

Query: 686 FTENYDVSIPPVS----TPEMESSNSSSDPIVKKTRWWKR 721
              +              P     +  S P  +++     
Sbjct: 298 RNTDQSPPRRRRDSDQSPPRRRKDSDQSPPRKRRSSDQSP 337



 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 35/162 (21%), Gaps = 7/162 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +            K   D Q+P   +               KS        +        
Sbjct: 250 RRRDDDHSPPRRKKRDDDDQSPPRRRFNADQSPPRRRKDADKSPPRRVRNTDQSPPRRRR 309

Query: 627 VIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              +   RRR+       R+  +      +    S          D+    +   +    
Sbjct: 310 DSDQSPPRRRKDSDQSPPRKRRSSDQSPPIKRRDSDQSPPRRRQADLKQHKNRRDSDQSP 369

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                   ++        S     +S        +K+RW K 
Sbjct: 370 PRQKRNSDQSPPRRRRSGSRDRSRASPGRIKKEERKSRWAKE 411


>gi|197102158|ref|NP_001125780.1| pre-mRNA-splicing factor CWC22 homolog [Pongo abelii]
 gi|75041856|sp|Q5RA93|CWC22_PONAB RecName: Full=Pre-mRNA-splicing factor CWC22 homolog; AltName:
           Full=Nucampholin homolog
 gi|55729161|emb|CAH91317.1| hypothetical protein [Pongo abelii]
          Length = 908

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +  + E  +  +  
Sbjct: 718 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 763

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        S    D    +  +        +++R
Sbjct: 764 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 823

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++      +  S      D S    M        ++ +  +NGA    E   
Sbjct: 824 GERRNSFSENEKHTHRNKDSENFRRKDRSKSREMNRRHSGSRSDEDRYQNGAERRWEKSS 883

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 884 RYSEQSRESKKNQDRRREKSPAKQK 908


>gi|332358015|gb|EGJ35848.1| translation initiation factor IF2 [Streptococcus sanguinis SK1056]
          Length = 932

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 5/182 (2%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R  E           +V    ++ L + +   +   +   R   S       +   +   
Sbjct: 5   RLYEIAKELGKESKEVVARAKELGLDVKSHSSSVEADAGERIKSSFTKAAAPQATAEKPA 64

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           + + SP +          ++          E   +  A +  P+S + +  ++    EE+
Sbjct: 65  VAQPSPQKTPAKEVAPAKAEQTEAKVTAKPEAKAETAAPVKRPQSRNFKAEREARAKEEA 124

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 RR+++  R+P           D  +      +  D    P+D  ++   +   +
Sbjct: 125 E-----RRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRN 179

Query: 685 GF 686
           G 
Sbjct: 180 GQ 181


>gi|315225611|ref|ZP_07867420.1| OmpH family outer membrane protein [Capnocytophaga ochracea F0287]
 gi|314944428|gb|EFS96468.1| OmpH family outer membrane protein [Capnocytophaga ochracea F0287]
          Length = 346

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 52/181 (28%), Gaps = 4/181 (2%)

Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570
           L      +     + D+   L   +       E R           E     +  E+   
Sbjct: 167 LRALKKKDNAEDRNKDMAQLLK--ESYDFEFVEERVKKRKEAEKAREQRRVQYEQERLRK 224

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE--STGVI 628
            + +     ++ +  +    ++  +   + +AL    + E  E +Q      +       
Sbjct: 225 TEEMKQQREQLKAKREKEQAERQQKFQQERDALKAQREKEQAERVQKFQQERDALKAQRE 284

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +++  R+++ +   D   A    + +  Q  +++      +          E      T 
Sbjct: 285 KEQAERQQKFQQQRDSIKAQRDKEQAERQKKLEEQTVQREKEQAERLKKQQEAKTQTPTT 344

Query: 689 N 689
           N
Sbjct: 345 N 345


>gi|194769021|ref|XP_001966606.1| GF22263 [Drosophila ananassae]
 gi|190617370|gb|EDV32894.1| GF22263 [Drosophila ananassae]
          Length = 3115

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/154 (6%), Positives = 38/154 (24%), Gaps = 1/154 (0%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             P                +P     +     +        +++ + +       ++    
Sbjct: 1598 EPATESEPEKDSEPETKASPK-KSTVSVTKTETERRNSRTTKAKQPVAPKESPSKAPQPK 1656

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              R+     R+  +   +    +  ++                 + +    +  +   T 
Sbjct: 1657 SPRKDSLNDRKRDSLVEETRTTTTTTTATTRPGRKPSDSNIKDRLRSSPRKQKTSPQPTR 1716

Query: 689  NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                +   V    ++  ++S D    +    +RR
Sbjct: 1717 TPTPAQARVPEDNVDGDSTSPDVSPSRVSTERRR 1750


>gi|149410656|ref|XP_001505258.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 2362

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 17/248 (6%)

Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ------KRAT 538
             CK   +   +S  AL I    E+        +I   +        L++      +  +
Sbjct: 16  ESCKKKYHSEEESKEALKINEHSEKLPTSKEPKHIHAKSEPSKPARRLSESLHTTDENRS 75

Query: 539 IVEYEARFGVSINV-----VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
             + E       +          ++ +    +E+             +  + + P  D N
Sbjct: 76  ESKTEREHRRRASTSLEGAQPDPDIKEAKRQMERPEINPEETQKPKSILKNEKHPKKDNN 135

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
              +      +P  +  S  +  +   +     +  K + +        D  +       
Sbjct: 136 DSEMH--LRSIPKKELRSYREKSEKERTLSEDKLSTKHKYKGDSVHKIGDETELH----P 189

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           S   +  D+S     +   +++ +  +  +    E     +        E++  + + + 
Sbjct: 190 SERNSKADESGQKQSQQIKVSSDDKADKKSKHRNEKKIPVLTKDGKTVSENTLKTEESLR 249

Query: 714 KKTRWWKR 721
           K+     R
Sbjct: 250 KENSKKDR 257


>gi|24580583|ref|NP_722616.1| split ends, isoform C [Drosophila melanogaster]
 gi|6715140|gb|AAF26299.1|AF184612_1 split ends [Drosophila melanogaster]
 gi|22945598|gb|AAN10511.1| split ends, isoform C [Drosophila melanogaster]
          Length = 5476

 Score = 38.8 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%)

Query: 77   DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136
            D  Q     R+  L+E    + D+     ++   D+        E+     +  ++  E 
Sbjct: 1940 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 1997

Query: 137  SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196
                      +   + +G           ++  +    +   +  +     +        
Sbjct: 1998 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2057

Query: 197  TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256
                   G      P+ +  +  SRK++     +  K      E     G      G+S 
Sbjct: 2058 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2113

Query: 257  TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306
                            ++                         E+ N      R   C  
Sbjct: 2114 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2173

Query: 307  ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364
             S           +               +    DP        +  E +L S HQ +  
Sbjct: 2174 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2232

Query: 365  LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419
                 +     + +            RE      A  TN +      +    R +     
Sbjct: 2233 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2292

Query: 420  -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472
                   +         +  + + RSVE+  K S   D             L+ +S    
Sbjct: 2293 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2350

Query: 473  RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525
              +   S           C        +++      ++ R  EE   +  A    +    
Sbjct: 2351 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2406

Query: 526  DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583
                   +    +  E+E R   +                        +          S
Sbjct: 2407 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2463

Query: 584  DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638
            D++    D        D   +   +         +  SE+       +     +R     
Sbjct: 2464 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2523

Query: 639  RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
            R A+D       +   +I+     +    ++   +++        H    + +       
Sbjct: 2524 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2583

Query: 699  TPEMES 704
                  
Sbjct: 2584 REIKTE 2589


>gi|198465678|ref|XP_002135021.1| GA23474 [Drosophila pseudoobscura pseudoobscura]
 gi|198150268|gb|EDY73648.1| GA23474 [Drosophila pseudoobscura pseudoobscura]
          Length = 1099

 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 32/141 (22%), Gaps = 3/141 (2%)

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           +      +     ++ +     + +S E               ++ R + R R       
Sbjct: 386 RPNESSADGRRDKRERSDSRSRRPKSNERGATTRTPPRKEPERKRERSKERFRSKERQRS 445

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE---M 702
                S           S +         +     +     ++    S     + E    
Sbjct: 446 KERQRSKERLRSKERQRSKERQRSKERPKSKERQRSRERQRSKERIRSKERQRSKERQRS 505

Query: 703 ESSNSSSDPIVKKTRWWKRRK 723
           +    S D    K R   + +
Sbjct: 506 KERQKSKDRQRSKDRQRSKDR 526



 Score = 38.0 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 33/148 (22%), Gaps = 3/148 (2%)

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
            +    S     DK      +        +  +           +      + R + R+R
Sbjct: 385 KRPNESSADGRRDKRERSDSRSRRPKSNERGATTRTPPRKEPERKRERSKERFRSKERQR 444

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
                     + S           S +         +     +     ++    S     
Sbjct: 445 SKERQRSKERLRSKERQRSKERQRSKERPKSKERQRSRERQRSKERIRSKERQRSKERQR 504

Query: 699 TPEMESSNS---SSDPIVKKTRWWKRRK 723
           + E + S     S D    K R   + +
Sbjct: 505 SKERQKSKDRQRSKDRQRSKDRQRSKER 532


>gi|189242426|ref|XP_969950.2| PREDICTED: similar to CG10984 CG10984-PC [Tribolium castaneum]
          Length = 762

 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 57/244 (23%), Gaps = 32/244 (13%)

Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542
                   G+I+      L + R  + +         +      V  YL N     + E 
Sbjct: 97  PLHDAAMNGHIKLVK---LLVERGADIHAKNSKGKTPLDVATPAVTPYLHNP-SLPLPES 152

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
            A   V   V    ++       E     Q       K   D       K  E   + + 
Sbjct: 153 TASTRVQPRVRDDKKVTS-----ETTKTKQDETMDTTKTTEDVYEFKSVKESEQTQEQKT 207

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIR----------------KRRRRRRRRRPATDHHD 646
                 SE  E         E                      +R++R+       +  +
Sbjct: 208 DAQESTSEQSEPTSTPATQTEENSKRNFSEIADSNDEVNDDESRRKKRK-------EEGN 260

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
               +      N            +          G  G  ++   S  P ST + E  +
Sbjct: 261 KDGKTPTQRNTNQAKGQSGKQGVAAQGKQTQAAAAGKTGEKKSPCSSPKPASTSDAEVED 320

Query: 707 SSSD 710
             SD
Sbjct: 321 GKSD 324


>gi|156052901|ref|XP_001592377.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980]
 gi|154704396|gb|EDO04135.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1505

 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 60/205 (29%), Gaps = 10/205 (4%)

Query: 514  YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573
              A          +V    +     +  +E    V I++     +        K    + 
Sbjct: 957  ENAEEHQTEVPEGMVA---DGGEDFLRSFE-YTDVKIDLEWDDIIPKDQLEGIKAEEEKR 1012

Query: 574  LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                      +  AP      +   ++ A +   +  + +  +D    EE       +  
Sbjct: 1013 AHEEYLAKVVEENAP-----RKAAMKNTAEVEREQRLAKKRERDQAKQEELEEKREAQAN 1067

Query: 634  RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI-TNHNLLENGAHGFTENYDV 692
            R   +RP  +     ++       ++ D   ++  E   +  +  +++      TE    
Sbjct: 1068 RLDPKRPLNEKETRNLMKAYLRYGSMEDRGEELVKEARLVGRDEEMMKATLKALTEESSR 1127

Query: 693  SIPPVSTPEMESSNSSSDPIVKKTR 717
             +   +        +++ P+ KK R
Sbjct: 1128 RLKEENERVEALERATNKPLTKKDR 1152


>gi|284991446|ref|YP_003410000.1| hypothetical protein Gobs_3019 [Geodermatophilus obscurus DSM
           43160]
 gi|284064691|gb|ADB75629.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 658

 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 34/158 (21%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++ +  ++            +     ++      D   +            D    + + 
Sbjct: 124 DRPAAGRSDWRDRRPSADRGRDDRPGRDDRRPQGDRPAVGRSDWRDRRPSADRGRDDRAG 183

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+ +  R  R    D   AG                    E                
Sbjct: 184 QDDRRPQGERPARGSWQDRRSAGERPQGERPARGSWQDRRSAGERPQGERPARGSWQDRR 243

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                     P  +   +  ++   P  ++T W  R +
Sbjct: 244 SAGERPQGERPARSTWQDRRSAGERPQGEQTGWRDRPR 281


>gi|169869605|ref|XP_001841364.1| hypothetical protein CC1G_12562 [Coprinopsis cinerea okayama7#130]
 gi|116497574|gb|EAU80469.1| hypothetical protein CC1G_12562 [Coprinopsis cinerea okayama7#130]
          Length = 369

 Score = 38.8 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 2/158 (1%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           IE+ +P Q      ++             +E    ++        + +   +        
Sbjct: 214 IEQETPPQRPPEDRYQGRRTRSRSQAQDALEEGASEDDSDQPSSFQGIRTRRQRREDAHP 273

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                + R  R R+  A   +   V         +   S          T      +   
Sbjct: 274 KSTDERSRTTRNRQTAANPENAKPVGKRKDYPVPL--TSPSKRPRVEASTQSKSSSHKKT 331

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             T   +   P     +  ++N   + +  K R   RR
Sbjct: 332 SQTSKREAPPPRTPKRQKPAANGRKEAVTPKKRVAGRR 369


>gi|302838362|ref|XP_002950739.1| hypothetical protein VOLCADRAFT_104851 [Volvox carteri f.
           nagariensis]
 gi|300263856|gb|EFJ48054.1| hypothetical protein VOLCADRAFT_104851 [Volvox carteri f.
           nagariensis]
          Length = 865

 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 33/138 (23%), Gaps = 6/138 (4%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVS 621
           F  +K    +   N                 +    +++    P    E      +   +
Sbjct: 332 FVDKKKDDTEQGGNAAAAETPAGAEEVAPVQVPRQQEEQNPANPPTSDEGDGTAAEMGEN 391

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             +       R++ R R+PA     AG              +     +           +
Sbjct: 392 PTTEEGEEVERKKPRGRKPAGSRQSAGCRKRKEPP-----PTEAGAEQAKTSRRRRGSTD 446

Query: 682 GAHGFTENYDVSIPPVST 699
              G +   D    PV T
Sbjct: 447 PRIGKSGCVDEEPKPVRT 464


>gi|302504256|ref|XP_003014087.1| PE repeat family protein [Arthroderma benhamiae CBS 112371]
 gi|291177654|gb|EFE33447.1| PE repeat family protein [Arthroderma benhamiae CBS 112371]
          Length = 1102

 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 42/157 (26%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK            K  +  + P+ +   +          +   E        +V E+  
Sbjct: 613 EKPQDDSPPAEDVVKEAAPPEQPAAEPVAKEEPVSSPTEELKTIEEPTPQPAPVVEEKPA 672

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             I++    +    P ++   +  + +  +      +         +  + +  +  +  
Sbjct: 673 EDIKEEPVPQAVEAPVSEDTASKPIIEEPAAVEDAPNHKAAEEAAVESKSKSRSKERSKE 732

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            ++         S P  E    S     KK    + R
Sbjct: 733 RSKEKRHKKHRRSAPAEEPPRPSKSSGEKKPSSRRPR 769


>gi|2425109|gb|AAB70838.1| choline binding protein A [Streptococcus pneumoniae]
          Length = 663

 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 15/183 (8%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            + E R                   I   +     V          +A       +    
Sbjct: 282 QKEEDRRN-----YPTNTYKTLDLEI---AESDVKVKEAELELVKEEAKEPRDEEKIKQA 333

Query: 600 D-EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
             +      ++  LE+I+ +    E     +     + + +PA     A           
Sbjct: 334 KAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPATQPEKPAPK 393

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               +     E +D       E      +E     +     P+ E     + P   KT W
Sbjct: 394 PEKPAEQPKAEKTD---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGW 447

Query: 719 WKR 721
            + 
Sbjct: 448 KQE 450


>gi|70950739|ref|XP_744668.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524714|emb|CAH78120.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 1546

 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 63/220 (28%), Gaps = 22/220 (10%)

Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555
             + A +  R+  E   +    +    ++ +      N+    +   E            
Sbjct: 24  VENDANNEKRNDVEENKEQKNEDNEKLSNIEENKEQKNEDNEKLSNIE------------ 71

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                     E              +  + +  + D   +   ++        +E L +I
Sbjct: 72  ----------ENKEQKNEGNEKLSNIEENKEQKNEDNEKQNNIEENKEQKNEDNEKLSNI 121

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
           ++N   +      +      + ++   +  +     + ++  N         +E +D  N
Sbjct: 122 EENKEQKNEDNEKQNNIEENKEQKNEDNEKNTIEEKNTNTTINTSSVQVTNDVENNDCKN 181

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +L     +        ++ P+   +  S++S  +  + K
Sbjct: 182 IHLNSTDKNRSNIEDSANLTPIEKKQEISNSSKREDNLNK 221


>gi|170068143|ref|XP_001868751.1| rhomboid [Culex quinquefasciatus]
 gi|167864260|gb|EDS27643.1| rhomboid [Culex quinquefasciatus]
          Length = 2375

 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 80/294 (27%), Gaps = 17/294 (5%)

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           + ++ K+SL   R++ +    S+ G +  +  R R   +E            G   +  S
Sbjct: 132 LLRRAKKSLTGSRSKPKTDDSSDGGKVSDTEVRKRRERIERYQSERGKNTSTGEAGAGDS 191

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL----NQKRATIVEYEARFGVSINVVI 554
            A + L    E   ++    +        +  +      + R  ++E E R  + + +  
Sbjct: 192 PAATNLSRFNEERRKFELEKLKFLQEKRELDRMRLRRFEKYREELLE-EQRKKLQVELRN 250

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-----CVWQDEALLPIPKS 609
                      E+   ++A V             S     +           +       
Sbjct: 251 RE-------RDERSKSIEAPVLPPIPPTRSKTPVSPGPTKKLLLVVPKTSSASASSSEDE 303

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
                  +  ++        ++ +R +  +              +S +   +   D   E
Sbjct: 304 ADHNTSDEEKMATIRRRFSPRKPKRPKSGKAEPVRQLPRTPELATSPEPESELPSDFPPE 363

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             + T+  ++        E     + P             +   KK    + +K
Sbjct: 364 AEEPTSPEVVVVEPVVEQEVIPEKVEPEMVLTQRKVVKQDEKEDKKDGVVEEKK 417


>gi|156406783|ref|XP_001641224.1| predicted protein [Nematostella vectensis]
 gi|156228362|gb|EDO49161.1| predicted protein [Nematostella vectensis]
          Length = 956

 Score = 38.8 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/144 (8%), Positives = 36/144 (25%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+                + +    +  ++   ++E  L   + +  E+ +     +   
Sbjct: 394 ERKRKEADDRQREAARKEEEEKRKREGEVKKRKEEEERLVEARRKEQEEKRKLEEQKRKE 453

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+R+    +R    +             +N      +   +  +    N +      
Sbjct: 454 EEDRRRKEAEEKRIKEEEARLKEERRSKDEEENRRKADEERKRKEQEEAERNRVVQEEKR 513

Query: 686 FTENYDVSIPPVSTPEMESSNSSS 709
             E         S  + E +    
Sbjct: 514 KIEQEGKQRKKESRKQEEQNKKEQ 537


>gi|323451008|gb|EGB06887.1| hypothetical protein AURANDRAFT_65285 [Aureococcus anophagefferens]
          Length = 2320

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 32/138 (23%), Gaps = 3/138 (2%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E+  P            +  Q    +   E    +  +    + E L           + 
Sbjct: 948  ERSKPAP---GESRVAVARHQNLLKEVERERRTVERLVKATQRLEELLRDATAAAERRAA 1004

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                +RR++  +                +       D+     E  +       E  +  
Sbjct: 1005 ADSERRRKKAAKEAETLAKRAEREADAEARRDKRSKDAATRKAERDEDAKQRRAEKDSEL 1064

Query: 686  FTENYDVSIPPVSTPEME 703
                 + ++  +   + E
Sbjct: 1065 AAAAANRALAEMKRKQAE 1082


>gi|302926991|ref|XP_003054405.1| hypothetical protein NECHADRAFT_98872 [Nectria haematococca mpVI
           77-13-4]
 gi|256735346|gb|EEU48692.1| hypothetical protein NECHADRAFT_98872 [Nectria haematococca mpVI
           77-13-4]
          Length = 2265

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 45/165 (27%), Gaps = 4/165 (2%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSES 611
                       IE    V A   T          P    ++E   +     + IP +ES
Sbjct: 668 EPAPVDQQPEQDIEMTDAVVASKATPEPPAQPEHEPEAPASVEKPKEPLAETVDIPMAES 727

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                    ++E +  + ++   +    P    ++                  +   +P 
Sbjct: 728 DPTPVAPEPAKEPSEKLIEKPIEKPTEMPIEKPNEKPSEQLDEKPSEK-AIEEEPVEKPV 786

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           +  +  +++  +   T        P      E    + +  VK++
Sbjct: 787 EKPDEMIIDKTSE--TTAEATVEKPADKTIEEPHEEAPEQPVKES 829


>gi|237835353|ref|XP_002366974.1| hypothetical protein TGME49_045440 [Toxoplasma gondii ME49]
 gi|211964638|gb|EEA99833.1| hypothetical protein TGME49_045440 [Toxoplasma gondii ME49]
 gi|221506351|gb|EEE31986.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 504

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 56/227 (24%), Gaps = 8/227 (3%)

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI------VEYEARFGV 548
                   + R  ++                +      N++R          E +     
Sbjct: 153 GAEMGERCVRRGEQQGEKSENDDQDNGKVDRERGKQGANREREEEITAKYEREIQKGTSK 212

Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIP 607
           +I  ++           +K    +     G            D+  +    + +      
Sbjct: 213 TIKRIVTERERQTSEKEQKSKDCERGSKDGETGKEKDYEMLEDRTADGDKAEGKTESEGT 272

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
             ES ++ +    S +     + R+R +R R   ++    G     S+     +      
Sbjct: 273 GLESEDESEPYSKSFKKEEQKKGRKRDKRNREQGSERSKTGDEQRGSASGPEEEYGQGAE 332

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
            +  D T    +E      + N           +     S  +  VK
Sbjct: 333 AKMKDRTKERRIEQEEDKDS-NARKRQKQSRKDQHSGGVSGKEGKVK 378


>gi|114661626|ref|XP_001164058.1| PREDICTED: hypothetical protein LOC744733 isoform 7 [Pan troglodytes]
          Length = 1792

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E S      
Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1058

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1059 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150


>gi|114661628|ref|XP_001164014.1| PREDICTED: hypothetical protein LOC744733 isoform 6 [Pan troglodytes]
          Length = 1792

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E S      
Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1058

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1059 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150


>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 799

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 6/128 (4%)

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
           A   I  +       +    E++     KR+R  RR + ATD  D    ++  +      
Sbjct: 588 AAREIETAPKAPVAAEKPEREKAEREKPKRKRGGRRTKGATDGADTAPTAETLAATTEGT 647

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP------EMESSNSSSDPIVKK 715
           D+     E +D          A     + D +      P      E  +   ++    K+
Sbjct: 648 DALAATSEGTDALAATTEGTDAVAEPLSDDAAPMVAEAPGAEPVVEAPTVAEAAPEKPKR 707

Query: 716 TRWWKRRK 723
            R   R+K
Sbjct: 708 KRAAPRKK 715


>gi|33620769|ref|NP_008841.2| E3 ubiquitin-protein ligase RBBP6 isoform 1 [Homo sapiens]
 gi|74762440|sp|Q7Z6E9|RBBP6_HUMAN RecName: Full=E3 ubiquitin-protein ligase RBBP6; AltName:
            Full=Proliferation potential-related protein; AltName:
            Full=Protein P2P-R; AltName: Full=Retinoblastoma-binding
            Q protein 1; Short=RBQ-1; AltName:
            Full=Retinoblastoma-binding protein 6; AltName:
            Full=p53-associated cellular protein of testis
 gi|31711501|dbj|BAC77636.1| retinoblastoma binding protein 6 isoform 1 [Homo sapiens]
 gi|119576195|gb|EAW55791.1| retinoblastoma binding protein 6, isoform CRA_c [Homo sapiens]
 gi|225000778|gb|AAI72357.1| Retinoblastoma binding protein 6 [synthetic construct]
          Length = 1792

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E S      
Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1058

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1059 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150


>gi|296219792|ref|XP_002756021.1| PREDICTED: retinoblastoma-binding protein 6-like isoform 2
            [Callithrix jacchus]
          Length = 1759

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    + K       + +   E+S      
Sbjct: 968  SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NVVKPAKGPQEKVDGEREKSPRSEPP 1024

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1025 LKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116


>gi|296219790|ref|XP_002756020.1| PREDICTED: retinoblastoma-binding protein 6-like isoform 1
            [Callithrix jacchus]
          Length = 1793

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    + K       + +   E+S      
Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NVVKPAKGPQEKVDGEREKSPRSEPP 1058

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1059 LKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150


>gi|149045217|gb|EDL98303.1| rCG43985 [Rattus norvegicus]
          Length = 1007

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 33/149 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q  V        +         I+   +   +    +  S +      + ++S    
Sbjct: 247 RRSQEKVGKARSPADEKIKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ +R                +     + S       S        +        
Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKQRDKSRRS 366

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +     S      S + S     K+R
Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395


>gi|114661630|ref|XP_001164099.1| PREDICTED: retinoblastoma-binding protein 6 isoform 8 [Pan
            troglodytes]
          Length = 1758

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E S      
Sbjct: 968  SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1024

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1025 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116


>gi|114661632|ref|XP_001163940.1| PREDICTED: retinoblastoma-binding protein 6 isoform 4 [Pan
            troglodytes]
 gi|114661634|ref|XP_001164141.1| PREDICTED: retinoblastoma-binding protein 6 isoform 9 [Pan
            troglodytes]
          Length = 1758

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E S      
Sbjct: 968  SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1024

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1025 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116


>gi|58865416|ref|NP_001011923.1| serine/threonine-protein kinase PRP4 homolog [Rattus norvegicus]
 gi|81883388|sp|Q5RKH1|PRP4B_RAT RecName: Full=Serine/threonine-protein kinase PRP4 homolog;
           AltName: Full=PRP4 pre-mRNA-processing factor 4 homolog
 gi|55715685|gb|AAH85927.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Rattus
           norvegicus]
          Length = 1007

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 33/149 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q  V        +         I+   +   +    +  S +      + ++S    
Sbjct: 247 RRSQEKVGKARSPADEKIKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ +R                +     + S       S        +        
Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKQRDKSRRS 366

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +     S      S + S     K+R
Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395


>gi|33620716|ref|NP_061173.1| E3 ubiquitin-protein ligase RBBP6 isoform 2 [Homo sapiens]
 gi|31711503|dbj|BAC77637.1| retinoblastoma binding protein 6 isoform 2 [Homo sapiens]
 gi|119576196|gb|EAW55792.1| retinoblastoma binding protein 6, isoform CRA_d [Homo sapiens]
          Length = 1758

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571  VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
             +       K  +         +   V + E    I K       + +   E S      
Sbjct: 968  SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1024

Query: 631  RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
             ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 1025 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084

Query: 691  DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      + +  N  + P+  K    KR+
Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116


>gi|327459327|gb|EGF05673.1| translation initiation factor IF2 [Streptococcus sanguinis SK1]
          Length = 930

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 6/124 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +  +  V             +     E         P  K+E+   ++            
Sbjct: 58  ATAEKPVAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKAETAAPVKRPQSRNFKAERE 117

Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +      RR+++  R+P           D  +      +  D    P+D  ++   +  
Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177

Query: 683 AHGF 686
            +G 
Sbjct: 178 RNGQ 181


>gi|317182308|dbj|BAJ60092.1| 30S ribosomal protein S1 [Helicobacter pylori F57]
          Length = 552

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 61/247 (24%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y          ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSAGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVVTLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDKKISLSTKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|116194812|ref|XP_001223218.1| hypothetical protein CHGG_04004 [Chaetomium globosum CBS 148.51]
 gi|88179917|gb|EAQ87385.1| hypothetical protein CHGG_04004 [Chaetomium globosum CBS 148.51]
          Length = 1052

 Score = 38.4 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 37/157 (23%), Gaps = 1/157 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +                 +  P     I    + +  L        E       SE    
Sbjct: 124 RRRAKDQARAARAGSIDATAPPPSPPTIRPTIEMD-GLEFEAESVEEQSNGEEGSEYEDL 182

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              + +RRR  R+PA          D  +      +  +         +    E  +   
Sbjct: 183 DEPQTKRRRAPRKPAPKDSRKRARDDEEAEARSEKERKERDARLRLERSAEAGEARSRRS 242

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +  +         E E          ++ +  ++RK
Sbjct: 243 QKLAEEKAERERKAEEERKVEEQRKAEQERKAEQQRK 279


>gi|301783279|ref|XP_002927053.1| PREDICTED: myosin-11-like isoform 1 [Ailuropoda melanoleuca]
          Length = 1979

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 73/242 (30%), Gaps = 19/242 (7%)

Query: 463  GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
            G +E    R+R +  ++              +   S    + R  +E   +         
Sbjct: 1757 GNMETMSDRVRKATQQAEQLNNELATERSAAQKNESARQQLERQNKELRSKLQ------- 1809

Query: 523  THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
               ++   + ++ ++TI   EA+        +  ++  +     +     A         
Sbjct: 1810 ---EMEGAVKSKFKSTIAALEAKIA-----QLEEQVEQE----AREKQAAAKSLKQKDKK 1857

Query: 583  SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
                    +   +   Q +       ++  +  +    +EE +  I   RR+ +R     
Sbjct: 1858 LKEMLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEA 1917

Query: 643  DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
               +  +  +V+++++ +    +    P+  +    +   A G  E  D      +  + 
Sbjct: 1918 TESNEAMGREVTALKSKLRRGNETSFVPARRSAGRRVIENADGSEEEVDARDADFNGTKA 1977

Query: 703  ES 704
              
Sbjct: 1978 SE 1979


>gi|297812707|ref|XP_002874237.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320074|gb|EFH50496.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 948

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 39/178 (21%), Gaps = 5/178 (2%)

Query: 550 INVVIGIE-LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
           I      E L        +            +   +     Y + +E      A     K
Sbjct: 768 ITFKADDEDLKGNDCVRAQPDNGMDEEQRQKRRRIEVALIEYRETLEEEGMKNAEEIERK 827

Query: 609 SESLEDIQDNIVSEESTGVIRKRRR----RRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
            E      +       +    + ++    R+  R  + +        +  S       S 
Sbjct: 828 VEINRKRLEVDYGLSKSNEGNRNQKSIIERKETREGSQESSKKRHRGENQSQSPPRKSST 887

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                  D+      E       ++                    D   ++ R W+RR
Sbjct: 888 RERERDHDLERDRDRERHRDRDRQHDLNRDRDRREKSSSHDRDDHDRSKERDRDWRRR 945


>gi|240140668|ref|YP_002965148.1| hypothetical protein MexAM1_META1p4234 [Methylobacterium extorquens
           AM1]
 gi|240010645|gb|ACS41871.1| conserved hypothetical protein with putative pseudouridine
           synthase-like domain [Methylobacterium extorquens AM1]
          Length = 669

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/172 (7%), Positives = 27/172 (15%), Gaps = 14/172 (8%)

Query: 565 IEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           +E+  P  +      H+              +   +D      P  +   D +       
Sbjct: 392 VERLQPSPEKPAPEPHRRVRFRNEEERSAPRDRAREDRPRQDRPGQDRPRDDRPRSEGPR 451

Query: 624 STGVIRKRR-------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
                 +R               R RRR                   +          E 
Sbjct: 452 ENRARDERPGRDEFRRGAPAGDARPRRREAGEAAPAERRGPPRERPSDFEGRPPRERSEG 511

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               + +             +                       +      R
Sbjct: 512 RPQRDFHGDSRERGEGAPRRERPSEGRPPERRGPPRDRPRAAEGERPARPPR 563


>gi|194758591|ref|XP_001961545.1| GF14881 [Drosophila ananassae]
 gi|190615242|gb|EDV30766.1| GF14881 [Drosophila ananassae]
          Length = 833

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/163 (7%), Positives = 38/163 (23%), Gaps = 2/163 (1%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
              +     + K    +  V       +     +  +    + + +   P   +   +  
Sbjct: 410 PSASAAQPQVPKSVEEKKEVPLPIATPAALPDSADSQPKTPLQKPKLESPPKTAPESQSP 469

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675
                 +        + + ++   P T+   A   +          +S     E    + 
Sbjct: 470 PTQPAEKSKQVPSSAQEQAKQATSPTTESVKAPAPASGPVSGPPSKESSKPDAEAKKKSP 529

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
            +  +  +    +          +P      S   P  KK   
Sbjct: 530 PSPAKKESPPPAKKESPPPAKKDSPPPAKKES--PPPAKKDST 570



 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/168 (7%), Positives = 30/168 (17%), Gaps = 13/168 (7%)

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN------IECVWQDEALLPIP 607
                +     ++K                 +Q     K        +            
Sbjct: 440 PDSADSQPKTPLQKPKLESPPKTAPESQSPPTQPAEKSKQVPSSAQEQAKQATSPTTESV 499

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
           K+ +      +    + +       +++    PA          +               
Sbjct: 500 KAPAPASGPVSGPPSKESSKPDAEAKKKSPPSPAKKESPPPAKKESPPPAKKDSPPPAKK 559

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             P      +             +   PP        +   S P  KK
Sbjct: 560 ESPPPAKKDST-------PPVKKESPPPPAKIESPLPAKKESPPPAKK 600


>gi|326923172|ref|XP_003207814.1| PREDICTED: telomere-associated protein RIF1-like [Meleagris
            gallopavo]
          Length = 2304

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 6/142 (4%)

Query: 568  GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                    +   +  +     S + +      +EA     K E       +     S   
Sbjct: 1466 SEYAVKKESGLPERSAAEALGSKEPSAPKGADEEANRSARKPEDALKSDTDSQDCSSDTA 1525

Query: 628  IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
              K+R R R     +          +SSI+N   D  +   E     +            
Sbjct: 1526 GEKKRERPRYHTRRS------SQGLLSSIENAEADGSETKKESLKKRSGKTKNKSDSLEG 1579

Query: 688  ENYDVSIPPVSTPEMESSNSSS 709
            +  DV +   S       + S 
Sbjct: 1580 KWKDVQLESQSHEVSSQVDESK 1601


>gi|326664877|ref|XP_003197902.1| PREDICTED: hypothetical protein LOC100537884 [Danio rerio]
          Length = 517

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 8/167 (4%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             EK         T  +                  ++      P      +    + S +
Sbjct: 265 KAEKNEKADKPEKTNKEKEEKKNDGEKVNKTVKTEKNVTAAKTPAKSPTANGSKEVTSPD 324

Query: 624 STGVIRKRRRRRRRRRPAT--DHHDAGVVSDVSSIQNVIDDSFDM------YMEPSDITN 675
           S         ++   RP +      AG     S   N  +    +              +
Sbjct: 325 SKTKPSAASTKQSSARPNSLSTGDSAGATKRTSPTTNSANKKSPIPKATTPTAGSKKTPS 384

Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +        T       PPV   +  S+++S +     T    RR
Sbjct: 385 STVENKAKSSETVTASQRRPPVPKAKAASASNSKNGTSAPTTTSARR 431


>gi|307168061|gb|EFN61372.1| hypothetical protein EAG_06707 [Camponotus floridanus]
          Length = 1202

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 79/298 (26%), Gaps = 49/298 (16%)

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           R+R  + + T            + +   +   IL   +         NI   T  +   Y
Sbjct: 598 RLRPPIPKLTNSPILSR----KVAATKVLNSPILERSKLLTKSSETKNIGYFTCVENSPY 653

Query: 531 LLNQKRATIVEYEAR--FGVSINVVIGIELA-DKLFY----IEKGSPVQALVNTGHKVGS 583
           +L +  +T   +E    F   I++     L     F     I++ S   ++ N   +   
Sbjct: 654 MLRKSNSTTNYHERTSYFDKDISIKAPNMLQNSPEFQRHLNIQRSSSNASIRNIRSQNFV 713

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS---------------------- 621
             ++     +I+ +           S S    Q                           
Sbjct: 714 SRRSSFNSNDIDRISSRGKFAVASDSSSETGEQQRKSPLTPISSGIKLNRAFSIRRARLN 773

Query: 622 --EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              ++T       RRRR +        A   +   S  N +        + S+ T     
Sbjct: 774 CESDTTPNTTPEERRRRAQSEVKTATPANKQNYHRSRTNSVGAHNKESSKKSEPTKFKTP 833

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR--------------WWKRRK 723
                        +  P  +   + +N  S    KK+                WKRRK
Sbjct: 834 SISRTDTGRFSMRAPKPNHSSNSQKTNQKSSKDHKKSGRSNSTLTSKEVEFQNWKRRK 891


>gi|134287217|ref|YP_001110913.1| hypothetical protein HVAV3e_gp060 [Heliothis virescens ascovirus
           3e]
 gi|133722125|gb|ABO37247.1| hypothetical protein [Heliothis virescens ascovirus 3e]
          Length = 597

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 34/159 (21%), Gaps = 9/159 (5%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +                     +         +  A        +    +     +  T 
Sbjct: 249 RSPKRTRRSPVRRSPSPRPYTATSVTRKYRRIKTPARSRSRSRSNSVGRRRTTAVKSRTK 308

Query: 627 VIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
              +R    R R R + P      +   S           S             +   + 
Sbjct: 309 SPARRQSVARSRSRSKSPVRKTTRSRTKSPARRQSVARSRSRTKSPARRQSVARSRSRSK 368

Query: 683 AHGFTENYDVSIPPVSTP-----EMESSNSSSDPIVKKT 716
           +    ++   S     +P       +S + S  P  +++
Sbjct: 369 SPARRQSVARSRSRSKSPARRQSVAKSRSRSKSPARRQS 407


>gi|125582752|gb|EAZ23683.1| hypothetical protein OsJ_07385 [Oryza sativa Japonica Group]
          Length = 1070

 Score = 38.4 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 61/224 (27%), Gaps = 9/224 (4%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           R+             +  L+  A+     +  D+      +K+       +R  +  N+ 
Sbjct: 32  RNGDDEEKKYSHHDMKNNLRNDANEEKRKSSDDMRDGDFEEKKKC-----SRHDMKKNLR 86

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                       +    ++   +   K        +   + +   +  +       +  +
Sbjct: 87  NDAN----EEKRKSSDDMRDGDDEEKKCSRQDMKKNLRNDADEEKRKSSDDMRDGDDEEK 142

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
             +     ++++       +R+R+R+ + D   + V        +  D   +        
Sbjct: 143 KKRSRHDMKKNSRNDADEEKRKRKRKCSDDLKKSVVNDASKEATSHSDWRKNRKAGSDAE 202

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                L NG          +       +++   +S+    K  +
Sbjct: 203 QRGKKLLNGDKKAKSRKVTTPFFEKMRKIKMQRTSNQNGEKNMK 246


>gi|309363134|emb|CAP27132.2| hypothetical protein CBG_06908 [Caenorhabditis briggsae AF16]
          Length = 480

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 40/150 (26%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + S                +    +       + +      + ++    ++     E   
Sbjct: 97  RNSEDDDEDYVYEDEKPAKKRRKDEARRAMAVKQKQAAEDQRRKAEAAAEERQKKAEEKR 156

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           + + RR   RR+  AT           + +     +  D   +   +     LE      
Sbjct: 157 LEKNRRDAERRKNEATKRAIQQQQQQAAMLAAQEREQKDQTAKRLSLMEMGELEMQGMPI 216

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            ++      P STP+ +     +    ++ 
Sbjct: 217 VDDKKKRKRPESTPKRQPRVRQNSEDDQEV 246


>gi|302510407|ref|XP_003017155.1| hypothetical protein ARB_04031 [Arthroderma benhamiae CBS 112371]
 gi|291180726|gb|EFE36510.1| hypothetical protein ARB_04031 [Arthroderma benhamiae CBS 112371]
          Length = 1020

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 7/178 (3%)

Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-----APSYDKNIECVWQD 600
            G   +++    +A      E+ +  Q+ +          +                   
Sbjct: 21  NGKRPDIIGDANVAVPRLTPEQNAQGQSDLYKSKWATPVDEYQTAWEKILAGKGGPSASQ 80

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR--RPATDHHDAGVVSDVSSIQN 658
                +P + S    Q    +++ T   ++ + ++R    +P+T         D  +  +
Sbjct: 81  ITQAAVPAATSGAKQQPPTSTDKPTAGKQESKGKQRATTQQPSTSPQKIDRADDGHNKPS 140

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               S    +  +     +  +          D   PP  T +     +S  P  +  
Sbjct: 141 SQKGSSGKTLSANPPKPASTDKKNMAVGEGPSDSRRPPPVTSQQSQPATSLPPASEND 198


>gi|283767855|ref|ZP_06340770.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461734|gb|EFC08818.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp.
           aureus H19]
          Length = 465

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/188 (9%), Positives = 33/188 (17%), Gaps = 14/188 (7%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-------------APS 589
           E R G   ++             E      A         +  Q                
Sbjct: 178 EQRNGFIQSLKDDPS-QSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEE 236

Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649
                    +D+  +        + + D    +E       +   +  +           
Sbjct: 237 QRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKPGKEDNKPGKEDGNKPGKEDG 296

Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                   N             D       +    G  +N        + P  E  N   
Sbjct: 297 NKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPG 356

Query: 710 DPIVKKTR 717
               KK  
Sbjct: 357 KEDNKKPG 364


>gi|219670756|ref|YP_002461191.1| hypothetical protein Dhaf_4760 [Desulfitobacterium hafniense DCB-2]
 gi|219541016|gb|ACL22755.1| hypothetical protein Dhaf_4760 [Desulfitobacterium hafniense DCB-2]
          Length = 450

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 6/195 (3%)

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIE----KGSPVQALVNTGHKVGSDSQAPSY 590
           +   +   E R  +     I  ++      IE    K +  +          S       
Sbjct: 229 EPKDLKAKEERARLLETPEIQEQMRKDKLIIEAMSNKTNQGEGKDKKEGYGKSKWYNLDR 288

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           +KN +   +++    I   +  +D   +   +++    + R + + + R           
Sbjct: 289 EKNNQKSTKEQPRNSIGNPKPSQDSNKSSNKDDNKNSNKDRSKDKDKDRDYGSGTKGKGT 348

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV--SIPPVSTPEMESSNSS 708
                ++   D+  D      +   +N          E   V  S    S  + E +  +
Sbjct: 349 DKGDDLEKGQDNRSDRTDNQGNSDRNNDQNTDKEKRGEKKGVPDSEQKQSPKQAEPAEKA 408

Query: 709 SDPIVKKTRWWKRRK 723
                + T+    RK
Sbjct: 409 GKRDNQDTKQNSNRK 423


>gi|13346457|gb|AAK19748.1|AF348207_1 C2H2 zinc finger protein [Homo sapiens]
          Length = 639

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|332016541|gb|EGI57422.1| Serine/threonine-protein kinase PRP4-like protein [Acromyrmex
           echinatior]
          Length = 940

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 41/157 (26%), Gaps = 2/157 (1%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK    +       +    S   + ++  E   +DE+   +   +       +   E   
Sbjct: 189 EKIRSKEEGKREEIRRDDRSSRKTSERQKEETRKDESNRKVGDDDQQRRKDLSRRDETWK 248

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +R     R+R  + HH +   ++  S  N   D        +    H   +  +  
Sbjct: 249 KESDRRE--ENRKREQSSHHSSKTNNETKSSDNKSRDRLASRERQNSRDRHISHDRRSRD 306

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
              + +             S        +      RR
Sbjct: 307 RLSSREPRRHASRDKRDSKSKDRYGNRDRHDGSRDRR 343


>gi|322789836|gb|EFZ14983.1| hypothetical protein SINV_06718 [Solenopsis invicta]
          Length = 885

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 9/155 (5%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
             PV+ ++    +   D       K+      ++ ++    SE+ ++    I        
Sbjct: 142 SRPVKQVIEVAKRFDDDITKKDNIKSEIVQAANDNVVQQEISETPKETSGEIDRPVEARK 201

Query: 628 IRKRRRRRRRRRPAT--DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
           I +R +R+ + R        D+  V + S +      S +        T+    E     
Sbjct: 202 IERRLKRKSKERVEKYCRSTDSSDVDEKSELNRRRTKSPEAMRSRVKKTSGRSREYDPES 261

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
              + + S         E  +SS   +  + R  +
Sbjct: 262 QKRDTERS-------NREKRSSSRQKLEDEPRIRE 289


>gi|260796013|ref|XP_002592999.1| hypothetical protein BRAFLDRAFT_65583 [Branchiostoma floridae]
 gi|229278223|gb|EEN49010.1| hypothetical protein BRAFLDRAFT_65583 [Branchiostoma floridae]
          Length = 2327

 Score = 38.4 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 37/170 (21%), Gaps = 6/170 (3%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA------LLPIPKSESLE 613
                 +   P +             Q     +  +   + +           PK E   
Sbjct: 827 SPENEKKATEPAKDEPAKPKPAKESDQPKDEQQPSKETEKPKEQPKPFKETEKPKEEPKS 886

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                   +E       +   + +  P T   D        +   +   S +    PS  
Sbjct: 887 TKVTEQPKDEPATTKPAKETEQPKNEPTTSKPDTPNKKAAETRPVIEKPSEEKAAPPSPK 946

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                 +      +     S       E  +   + +    K +   R+K
Sbjct: 947 PKSTKEKKTPKTPSPKVRKSSKSKDPTEEPTKKKTKEKKPAKEKTKSRKK 996


>gi|320542598|ref|NP_001189208.1| CG42795, isoform A [Drosophila melanogaster]
 gi|318068752|gb|ADV37299.1| CG42795, isoform A [Drosophila melanogaster]
          Length = 3189

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 6/183 (3%)

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +        E +  V  +     +         +            +    +   +  + 
Sbjct: 1183 ELEDRFNALERKMSVQKSSPSKNKKEPPD----EEESKSTKEPEEPEESEKANEKTSGRQ 1238

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                 +D       KSE+ E+       +E   V   +      +  +++  +     + 
Sbjct: 1239 TPIAKKDSKDSDQKKSETKENQSPTKNQDEKVKVKSPKSEEMIEKETSSNPKEDS--HES 1296

Query: 654  SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             +  N   +                    A G            +  +      S     
Sbjct: 1297 EAATNKKVEGNRELSSEKGDHKIKEKSEEAPGKAGKETAETKNANVKDSSKKGDSQKNEA 1356

Query: 714  KKT 716
             KT
Sbjct: 1357 AKT 1359


>gi|308509248|ref|XP_003116807.1| CRE-LET-858 protein [Caenorhabditis remanei]
 gi|308241721|gb|EFO85673.1| CRE-LET-858 protein [Caenorhabditis remanei]
          Length = 916

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 5/163 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK        ++       S++ S  ++ E   + +        +  +            
Sbjct: 19  EKDEAATEQPDSPKSGSEKSRSASPRESRESSPESKRSGRSDDEDDDKQPATPPSDRSRE 78

Query: 626 GVIRKRRRRRRRRRPAT-----DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680
                +R R  R    +         + +       +            P         +
Sbjct: 79  ASPEPKRHRESRSSSPSRSPAPARQRSPIRQKSPVRRRSPAREKSPEPAPKPSDEKKKND 138

Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +     T      IPP     M+   +       +   W+R K
Sbjct: 139 SKDLLRTRTGGAYIPPAKLRLMQQQITDKSSEQYQRMNWERMK 181


>gi|297839843|ref|XP_002887803.1| hypothetical protein ARALYDRAFT_895889 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333644|gb|EFH64062.1| hypothetical protein ARALYDRAFT_895889 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 897

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 49/239 (20%), Gaps = 18/239 (7%)

Query: 492 YIRSQSSVALSILRSVEE----YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            +R          R   E       +         +  ++       ++      E   G
Sbjct: 43  RVRVSDDEDHKSSRRDLEIGGGERRRGDKVRKETSSDEELSRRSRKDRKEVNSGSEDDRG 102

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
             I      +       + KG     +            +    K    V  D       
Sbjct: 103 KKIEAGSDADGER---RVSKGKNKDRVRADTSSDEEADDSKGNKKETMEVEDDYGRSGRR 159

Query: 608 KSESLEDIQDNIVS---------EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
           +S  + +      S         + S     ++R R  RR       D     D    + 
Sbjct: 160 RSPKVMEKHGRERSHRGSRVIADKPSDEEDDRQRSRGGRRESERKRRDHRASDDDEEGEI 219

Query: 659 VIDDSFDMYMEPSDIT--NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             +       +  +      +  E       EN                +   D   ++
Sbjct: 220 RSERKGKERNDRGNEGLLKRDRRERDLTDGHENGSRRREVERKDRSRRDDGVRDEKERR 278


>gi|255994455|ref|ZP_05427590.1| hypothetical protein GCWU000322_00534 [Eubacterium saphenum ATCC
           49989]
 gi|255993168|gb|EEU03257.1| hypothetical protein GCWU000322_00534 [Eubacterium saphenum ATCC
           49989]
          Length = 1155

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 11/178 (6%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW---- 598
           E +   +I +V   +   +   +E    V   +    +   +      D  I+       
Sbjct: 796 ENKVKNNIKIVGNSKELREKVLVETEVNVTKKIEETREYKEEVAEDEKDFVIDEDQLLIS 855

Query: 599 -----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--VVS 651
                +++A   + K E  E      V  ES      +      ++  ++        V 
Sbjct: 856 DKKEPEEQAETVVEKEEKPEPEVTEEVKPESDAEQEAKSESEIAKKANSEPETKSETNVE 915

Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
              + +   D+   +  EP    N       +    +     +      +++  +   
Sbjct: 916 AEITRETEKDEDDKLVDEPVPSKNDKFEIENSDDSEDKETAGMEAEEDTQVKEHDKKK 973


>gi|195395382|ref|XP_002056315.1| GJ10883 [Drosophila virilis]
 gi|194143024|gb|EDW59427.1| GJ10883 [Drosophila virilis]
          Length = 1315

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 1/157 (0%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K S    L        +       D + +    DE      + +   D       +  + 
Sbjct: 267 KMSTDSELEQASTSKRNRRDKTGSDNDSDYKEADEPAESEQEKQENSDSDAEDGEDAQSS 326

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                 +R+RR   +     +   S     ++          + S   + +  +      
Sbjct: 327 ASEVMPQRKRRNFGSKKDAGSAQDSSDFEPEDKKKKKRRRIKKNSSGDSDDGDDEKNKNK 386

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              +   I      +M +  ++ +   ++ R  +R+K
Sbjct: 387 -RKHIRKIIKTKDLDMTTKEAAKEEEDRRKRIEERQK 422


>gi|47575780|ref|NP_001001234.1| peptidylprolyl isomerase G [Xenopus (Silurana) tropicalis]
 gi|45708892|gb|AAH67931.1| peptidyl-prolyl isomerase G (cyclophilin G) [Xenopus (Silurana)
           tropicalis]
          Length = 736

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 38/155 (24%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                      HK  S  +    D   E            +SE   + ++N  S + +  
Sbjct: 407 SQKGDREKQKDHKSASKERDLKKDAEKEERPNKSRSSKRTRSERRSESKENSKSNKDSKH 466

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +   + R + +           S   + +     S +     S        +       
Sbjct: 467 SKHDVKARSKSKERAHEKGKEKNSSDKAKEKDRSKSRERVKHSSSKNERAKSKEREKTRE 526

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                      +   +  ++S      K+R   RR
Sbjct: 527 RQGKSRSRERESARTKHGSNSRAKERSKSRENSRR 561


>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
 gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
          Length = 500

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 8/166 (4%)

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           G +I+ V   E A +LF IE+        +        ++ P    +   +   +   P 
Sbjct: 341 GKAISFVSEDE-AKELFAIERLIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKPK 399

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
                 +D Q +            ++  ++ ++PAT        +     +    D    
Sbjct: 400 APRVEHKDGQRSG-----ENRNGNKQGAKQGQKPATKR--TPTNNPSGKKEGTDSDKKKR 452

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                  T       G          +      P  +    +  P 
Sbjct: 453 PFSGKPKTKGTGENRGNGSNFGKSKSTPKSDVKPRRQGPRPARKPK 498


>gi|268564626|ref|XP_002639167.1| C. briggsae CBR-HSR-9 protein [Caenorhabditis briggsae]
 gi|187035948|emb|CAP24554.1| CBR-HSR-9 protein [Caenorhabditis briggsae AF16]
          Length = 1165

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 18/175 (10%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           + +G   +   +   +        + +++     ++E   P P +E + D      +   
Sbjct: 357 VRRGRSAKTANSAEQESEVSETPKTPERSRRSTGKNED--PEPVAEDIVDGDQPEAATPK 414

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            G   KR     +   +T         D          +     + S        ++ + 
Sbjct: 415 RGGRGKRSMPSTQTPRSTRGRGKKADVDEDENNQSAIPNDKESEDGSSTRTPRTRKSTSR 474

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV----------------KKTRWWKRRK 723
              E   V    V+  E     +SS                    K+T    R+K
Sbjct: 475 AAVEQEAVDEAEVAETESSEPTTSSRRSTRAKAPAKATPATPATNKRTPARGRKK 529


>gi|91977457|ref|YP_570116.1| hypothetical protein RPD_2989 [Rhodopseudomonas palustris BisB5]
 gi|91683913|gb|ABE40215.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 373

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 35/159 (22%), Gaps = 13/159 (8%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           + I  G+          K           +    V  + A       E+   +Q      
Sbjct: 82  YLISNGATDTRYKQNDAKSEPGQPEGRQGRRQRPVAGEAARPEAAAPEAGAPVQAEEGV- 140

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL---- 678
                   RR R  +R+P  +       +  +              E       +     
Sbjct: 141 --------RRSRNSKRQPKPEADKPAEGAAAAETAAPAPAEQPPAKERRKHGRKDKPGQA 192

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              GA           P  + P +   +++     K   
Sbjct: 193 APAGADAAKGEPQKPSPAATEPAVAKPDTTKPDSAKPDG 231


>gi|195999462|ref|XP_002109599.1| hypothetical protein TRIADDRAFT_53787 [Trichoplax adhaerens]
 gi|190587723|gb|EDV27765.1| hypothetical protein TRIADDRAFT_53787 [Trichoplax adhaerens]
          Length = 1866

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 72/251 (28%), Gaps = 6/251 (2%)

Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532
           R  +              G+ R        + R++   +  +      +  + DV  YL 
Sbjct: 436 RKRLQSVDEDDIQLPLDQGWRRQTRLR--RVGRNLRGDVYYFAPCGKKLRIYPDVTKYLR 493

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
               + +   E     +   +   ++ ++        P+        +  + ++     +
Sbjct: 494 KNSISDLN-LENFSFSTKLYIGDFQIYNEDSG--TFEPMDEDELHRRRQEASTKKNQKLE 550

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
            +    + + L      +  E      + ++     ++  ++ R  + A +   A   + 
Sbjct: 551 KLRKRDERKRLAAEKAKKMQEAKLQRKMEKQRAAADKREEKKERAIKAAMERKAARDQAK 610

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
           +  ++  +    +   +        L++       +            + E         
Sbjct: 611 MEKLREKMAR-HEKIKQEKKKKKEALIQARNKKKEDAEKKRYQEALQRQKERELKKQQAK 669

Query: 713 VKKTRWWKRRK 723
           + KT+  +RRK
Sbjct: 670 ILKTKEKERRK 680


>gi|261333815|emb|CBH16810.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
            gambiense DAL972]
          Length = 2849

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 67/645 (10%), Positives = 176/645 (27%), Gaps = 32/645 (4%)

Query: 80   QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139
            Q P  D +   +    + T  E   +     +    +  S E    I+       E +  
Sbjct: 1595 QEPTKDSEKQEESRASSATRDEISQEPSKESEKQEESRASSESPDEISQ------EPTKE 1648

Query: 140  SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199
            S   +      +      ++  K+ ++Q   +     R  +  +  KE    + +  ++ 
Sbjct: 1649 SEKQEESRASSETPDEISQEPTKESEKQEESRASSATRDEISQEPSKESEKQEESRASSA 1708

Query: 200  LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259
                       P     +    + ++    +  +E  +  E          T      + 
Sbjct: 1709 TRD---ELSQEPTKESEKQEESRASSASRDEISQEPTKESEKQEESRASSATRDEISQEP 1765

Query: 260  EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319
              + + +   R     R+            +E +    A RD   ++ S+     E+   
Sbjct: 1766 SKESEKQEESRASSATRDEISQEPTKESEKQEESRASSATRDEISQEPSKESEKQEESRA 1825

Query: 320  EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379
             +    ++         +Q E       R  I  +     + +    +        ++  
Sbjct: 1826 SSATRDEISQEPSKESEKQEESRASSATRDEISQEPSKESEKQEESRASSATRDESSQEP 1885

Query: 380  VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439
                  S +         T  +++ E  +E  +Q   R  +     +      K++ +  
Sbjct: 1886 SK---ESEKQEESRASSATPDESSQEPTKESEKQEESRP-SSATRDEISQEPSKESEKQE 1941

Query: 440  EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499
            E +   +   + +++           E SR    ++  E + +     +     R+ S+ 
Sbjct: 1942 ESRASSATGDESSQMSTKESEK---QEESRP-SSATRDEISQEPTKESEKQEESRASSAT 1997

Query: 500  ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV-IGIEL 558
                 +   +   +         T  +       +        E +    +         
Sbjct: 1998 GDESSQEPTKESEKQEESRPSSATRDESSQVSSKES-------EKQEESRVYSESPDESS 2050

Query: 559  ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             +     EK        +       D  +    K  E   +       P   S E  +++
Sbjct: 2051 QEPSKESEKQE-----ESRASSATRDESSQEPSKESEKQEESRVSSESPDESSQEPTKES 2105

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
               EES           ++    ++  +   V   S  ++  + S +   +     +   
Sbjct: 2106 EKQEESRASSATGDESSQKPSKESEKQEESRVYSESPDESSQEPSKESEKQEDSRPSSAT 2165

Query: 679  LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +  +   ++  +      S    ES + SS    K++   +  +
Sbjct: 2166 RDESSQEPSKESEKQEE--SRVYSESPDESSQEPTKESEKQEESR 2208


>gi|221481108|gb|EEE19516.1| AT hook motif-containing protein, putative [Toxoplasma gondii GT1]
          Length = 3768

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/149 (7%), Positives = 40/149 (26%), Gaps = 1/149 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +     +       +  S+ +        +    +E+      +   ++ Q+    +   
Sbjct: 409 DASGDAREGAPLPEQGDSEKEGAEKKARQQPGRTEESRGKRENARGEDEQQEEAEKKRGK 468

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS-FDMYMEPSDITNHNLLENGAH 684
               ++++    RRP  +  +  V   ++       ++      E ++            
Sbjct: 469 KEDLRKKKVSSVRRPDEEKEETEVDVVMTDANEAEREAVHAERRESAESGEGAEAREEKK 528

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              E  + +    +  E   + S      
Sbjct: 529 RRVEGREPAKLEEAVGEARETQSDGRREE 557


>gi|237836993|ref|XP_002367794.1| hypothetical protein TGME49_005630 [Toxoplasma gondii ME49]
 gi|211965458|gb|EEB00654.1| hypothetical protein TGME49_005630 [Toxoplasma gondii ME49]
          Length = 850

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 56/231 (24%), Gaps = 9/231 (3%)

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
           +S Q  R   LE  +       G G             R       +    ++ V     
Sbjct: 107 VSSQLEREKDLERESDRDFMSDGRGDGEDVERRTEKESRKGNGREKRQKRFSVEVRESPQ 166

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGI----ELADKLFYIEKGSPVQALVNTGHKVG 582
                ++++RA++   E R    I          EL  +   +EK S             
Sbjct: 167 -----MHRRRASLAGEEWREAGDIGEESEAGPHTELEVEADVVEKKSEKTRRTRHRPVKK 221

Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
               A    K    + +DE   P          + +   EE+ G  +++     R R   
Sbjct: 222 KAEPALDRKKTQGDLEEDEGEAPRAALSRRTRTKVDEDGEETRGKAKEKTSGNARGRGDN 281

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
               A   +             +   +              H        +
Sbjct: 282 TGSVASEGAPQPRGPLRRSPRLEGQEQRRQEREAEQEYVETHATKTEGQAT 332


>gi|145257371|ref|XP_001401706.1| AT DNA binding protein (Thy28) [Aspergillus niger CBS 513.88]
 gi|134058620|emb|CAK38604.1| unnamed protein product [Aspergillus niger]
          Length = 304

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/108 (8%), Positives = 22/108 (20%)

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
                    + A +                +  +    ++ R R+          D    
Sbjct: 1   MAPQRKRKSESASIAEETESPAAKRVAAPDTPATGEKRKRGRPRKYPEGSTPKRPDGPKR 60

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
                 ++    +      P         +N     TE    +  P +
Sbjct: 61  GRGRPRKDPNAPTPAKSTTPKQGKRGRPRKNPIENGTEPTSSTTKPET 108


>gi|118367274|ref|XP_001016852.1| FHA domain containing protein [Tetrahymena thermophila]
 gi|89298619|gb|EAR96607.1| FHA domain containing protein [Tetrahymena thermophila SB210]
          Length = 776

 Score = 38.4 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 46/179 (25%), Gaps = 10/179 (5%)

Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598
           +   E +  V +      + + +L  I K            K   D +     +      
Sbjct: 413 LKYGEVKLKVKV---ADKDKSAQLMNICKIKDGNNNDEDSKKRYDDKRGSERSRRERSSD 469

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
           +          +     +       S    RK R + R  +   ++ D     +   ++N
Sbjct: 470 RHRDRSSERYRDRDSKYKRRYSKSRSRSNDRKLRDKNRVSKFDNNNQDKEQKREREEVKN 529

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +   +      D       E  +        V          +S +++     ++ R
Sbjct: 530 EQNQDLEKKQNSEDAQKKEEKEPSSK-------VKENKDKRKRSDSRDNNKKQDKRRDR 581


>gi|332665947|ref|YP_004448735.1| transcription termination factor Rho [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334761|gb|AEE51862.1| transcription termination factor Rho [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 695

 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 2/123 (1%)

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
            E E +  ++       +L       E+    +       + G         +      +
Sbjct: 123 EELEQQQALTRRDRNMPKLERTRDRNERTEKPERDPERDERGGRVEPQRPTREERPSRDE 182

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQ 657
                  P S      ++   S +       R  R  R  R       +    ++ +   
Sbjct: 183 RPIRDERPSSRDERPSREERPSRDERPTRDDRPSRDERPTRDDRPSRDERPERNERTPRF 242

Query: 658 NVI 660
              
Sbjct: 243 ERE 245


>gi|327472751|gb|EGF18178.1| translation initiation factor IF2 [Streptococcus sanguinis SK408]
          Length = 930

 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 6/124 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +  +                +     E      A  P  K+E++  ++            
Sbjct: 58  ATAEKPAAAQPSPQKTPAKEAAPVKAEQTEAKAAAKPETKAETVAPVKRPQSRNFKAERE 117

Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +      RR+++  R+P           D  +      +  D    P+D  ++   +  
Sbjct: 118 ARAKEEAERRKQQSNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177

Query: 683 AHGF 686
            +G 
Sbjct: 178 RNGQ 181


>gi|156841156|ref|XP_001643953.1| hypothetical protein Kpol_1001p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114584|gb|EDO16095.1| hypothetical protein Kpol_1001p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 598

 Score = 38.4 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 52/202 (25%), Gaps = 12/202 (5%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           ++  YLL+         E      I V+          +          +        + 
Sbjct: 296 EISSYLLDIDPPDESLLEMMIKRKIEVLREYTYNSVSVFSTTFQIGYEPLAIPLVTKEEP 355

Query: 586 QAPSYDKNIEC--------VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637
                +K  E           + E        E  +  ++  V EE+      + +   +
Sbjct: 356 VMTEVEKEEESGAKEESEVKEESEVKEESEVKEEPKRKEEFEVKEEAKIKEEVKTKEEVK 415

Query: 638 RRPATDHHDA----GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
            +   +  +A    GV  +  +       S +   +P +               +N   +
Sbjct: 416 TKEEANLDEAKTGEGVKPEDKAELEDKTKSDEGKAKPEEEVKPETKIEKEKTNPQNKTTT 475

Query: 694 IPPVSTPEMESSNSSSDPIVKK 715
             P +    E   ++S     K
Sbjct: 476 PEPTAKVIEEEDKNTSITEKPK 497


>gi|195573901|ref|XP_002104930.1| GD18194 [Drosophila simulans]
 gi|194200857|gb|EDX14433.1| GD18194 [Drosophila simulans]
          Length = 1098

 Score = 38.4 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 40/163 (24%), Gaps = 13/163 (7%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP------------IPKSES 611
            + K  P Q            +      +      + E                  KS  
Sbjct: 253 SLAKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEPDSDYEAPAAEEEEEEERKSSG 312

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            E+   N    E     ++RR++    + ++D             +     S +   +  
Sbjct: 313 DEEEAANSSDSEVMPQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDADGD 372

Query: 672 DIT-NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
           D    +          T++ D++    +  E +      D   
Sbjct: 373 DDKQKNKRKHIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQK 415



 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 41/154 (26%), Gaps = 2/154 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +A   +       S++ S   +       E      +  S ++ +    S+     
Sbjct: 268 SDSEEAATTSKKSRQRRSKSESEPDSDYEAPAAEEEEEEERKSSGDEEEAANSSDSEVMP 327

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            RKRRR++      +   +          + +   S        D               
Sbjct: 328 QRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDADGDDDKQKNKRKHIRKII 387

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
           +  D+ +   +    +  +     I  + + + R
Sbjct: 388 KTKDLDL--TTKEAAKEEDDRRKRIEDRQKLYNR 419


>gi|23306002|gb|AAM54369.1| profilaggrin [Rattus norvegicus]
          Length = 501

 Score = 38.4 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 2/93 (2%)

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                + +RR RRR        +                S  +  E   I N +      
Sbjct: 111 EERREKVQRRHRRRNSGTDGKQENERSKSPRGRGKKRRGSSTISEESDTIRNSDTENKRH 170

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
           H  +          S  + + + S     VK+T
Sbjct: 171 HHGSNRRQRRGSNSS--DRKETRSKKHREVKET 201


>gi|268575020|ref|XP_002642489.1| Hypothetical protein CBG06908 [Caenorhabditis briggsae]
          Length = 527

 Score = 38.4 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 40/150 (26%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + S                +    +       + +      + ++    ++     E   
Sbjct: 144 RNSEDDDEDYVYEDEKPAKKRRKDEARRAMAVKQKQAAEDQRRKAEAAAEERQKKAEEKR 203

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
           + + RR   RR+  AT           + +     +  D   +   +     LE      
Sbjct: 204 LEKNRRDAERRKNEATKRAIQQQQQQAAMLAAQEREQKDQTAKRLSLMEMGELEMQGMPI 263

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            ++      P STP+ +     +    ++ 
Sbjct: 264 VDDKKKRKRPESTPKRQPRVRQNSEDDQEV 293


>gi|289617985|emb|CBI55562.1| unnamed protein product [Sordaria macrospora]
          Length = 740

 Score = 38.4 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 38/171 (22%), Gaps = 8/171 (4%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN 618
                 ++G   +            S   S ++  +  V  +       K+   ED  + 
Sbjct: 324 SPSKAAQRGGTEREEHQGSEAGDRQSDTRSDERAEDGGVETERPSRQTRKNRDQEDETEK 383

Query: 619 IVS-EESTGVIRKRRRRRRRR------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
                +        R+R RR       +P T   +          Q    D+        
Sbjct: 384 AQEISDKEAARIIGRKRPRRAVPTPSPQPETRPSEEEPQPKRRRRQAEPADTTQPKQTKI 443

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                           +           P        + P  KK R   +R
Sbjct: 444 QRERVQRAPTPVPSPPKIPQKQQKQPKQPTSRKPTIQNPPKPKKGRKTTKR 494


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score = 38.4 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 45/166 (27%), Gaps = 6/166 (3%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            +   K            +    SQ    +K      ++       K +  E   +N  +
Sbjct: 403 DYQSHKDKKQGNNKQRSRRPEPQSQDSFDNKAQHSQERNPNYRQKNKGQGQEQQNNNNNA 462

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
            E+  V ++  R+ + R+            +     N  D S     + +   N+   + 
Sbjct: 463 VEAKSVSKRNNRQDKNRQTDKQMKSNNNRRNDKEAANNKDASQKTNAQQNRKPNNKKKKK 522

Query: 682 ------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                      T            P    S+S    ++KK   W R
Sbjct: 523 NNRQRNTNEKATRRSTKYDIREELPTSSKSDSGLKALIKKPLKWLR 568


>gi|297268403|ref|XP_001094093.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Macaca
            mulatta]
          Length = 1298

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 35/144 (24%), Gaps = 12/144 (8%)

Query: 577  TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES------------ 624
                  +D   P    +     +DE       SES  D   N    E+            
Sbjct: 1148 EDKLKIADEGHPRNSNSNSDSDEDEQRKKRASSESDSDENQNKSGSEAGSPRRPRRQRSD 1207

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                  +  R+RR   +    +  V S  S      +DS                 +   
Sbjct: 1208 QDSDSDQPSRKRRPSGSEQSDNESVQSGRSRSGVSENDSRPASPSAESDHESERGSDNEG 1267

Query: 685  GFTENYDVSIPPVSTPEMESSNSS 708
                + + S P  S  E     S 
Sbjct: 1268 SGQGSGNESEPEGSNNEASDRGSE 1291


>gi|195333992|ref|XP_002033670.1| GM21450 [Drosophila sechellia]
 gi|194125640|gb|EDW47683.1| GM21450 [Drosophila sechellia]
          Length = 851

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 2/157 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E+G+  +    T        ++ S D   +   +++A     +S+S    +    ++ 
Sbjct: 242 DVERGAIFKEDKKTATLKDDVKKSFSKDDAWKSRTKEDAKKSFQRSKSPRP-EHLKTTDR 300

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
            +    +R  R R R P  +       +  SS ++    S        ++          
Sbjct: 301 KSTAQTRRPDRHRSRSPKQNSRRDHHRNQESSPRHAKRRSHSASPSKINL-PREKANAIT 359

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
               +  +        P      + S P  K     K
Sbjct: 360 KLTDDETNAQRSKSPVPVTAKLVTESQPAEKVKSNRK 396


>gi|194896322|ref|XP_001978456.1| GG19595 [Drosophila erecta]
 gi|190650105|gb|EDV47383.1| GG19595 [Drosophila erecta]
          Length = 2532

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 2/174 (1%)

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE--ALL 604
           G  I   +      +     +G  V   ++   +  S +      K  +    +      
Sbjct: 667 GKKIPTKVESNFVTEKVIDCRGKTVVEKISQRPRTPSPTTPKKNTKPSQKSIPERVLETE 726

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
             P+ +S  D + N     +     +R  R  + +      +       +        + 
Sbjct: 727 SEPEKDSEPDTKKNTSVTVTKSETERRNSRTTKTKQPLQPKEPLTKVPAAKSPRKDSLTG 786

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                  + T             +  D +  P     + SS        ++TR 
Sbjct: 787 RKRDSLVEETRTTTTTTTTRQGRKPSDTNGSPSIKDRLRSSPRKQKTSPQQTRT 840


>gi|326926643|ref|XP_003209508.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Meleagris
           gallopavo]
          Length = 1124

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/171 (8%), Positives = 29/171 (16%), Gaps = 8/171 (4%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                       I +  P             D   P  +         E    +P   + 
Sbjct: 386 KPDSSFIVNPASITRNIPEVDRSKKPSIKIPDDSKPKSESTPSDSQPIENARVVPDRSTK 445

Query: 613 EDIQDNIVSEESTGVIR--------KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
             +    V  E              ++ +R +  R          +      Q       
Sbjct: 446 PLLDAKSVLTEEEKSRVHAETAALMEKNKREKELRERQKEEQKERLKREKEEQEQKAKEE 505

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               E  +    +  E       E            +       +    K 
Sbjct: 506 QREKEHKEKLQQSKEEREQKERDEQIKREQEEKEKEKARKEAIEAKKQNKN 556


>gi|301308164|ref|ZP_07214118.1| translation initiation factor IF-2 [Bacteroides sp. 20_3]
 gi|300833634|gb|EFK64250.1| translation initiation factor IF-2 [Bacteroides sp. 20_3]
          Length = 973

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 3/189 (1%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI---EKGSPVQALVNTGHKVGSDSQAP 588
           LN    T+VE+  R G S+       ++D+ + +   E G  +           +  +AP
Sbjct: 12  LNVGINTVVEFLHRNGFSVEDNPNTRISDEQYALLVKEFGKDLPEKDRNFAADRAQKEAP 71

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
           S  +      +            ++   D    +        + +   + +      +  
Sbjct: 72  SVKEEKTAEIKTVIPEEFRPKIVMKGHIDLDGGQHKKQQEEPKAKEEPKVKEEPKVKEEP 131

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
            V +  +               +                E      P V+ P++ES    
Sbjct: 132 KVKEAPAAPAAQAPVKPAQPAQAPTEKKEEKVIVVEVEKEKTVEKQPVVAEPKVESVKPE 191

Query: 709 SDPIVKKTR 717
            +    + +
Sbjct: 192 QEVEKTEEK 200


>gi|189190726|ref|XP_001931702.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973308|gb|EDU40807.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 2856

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 40/165 (24%), Gaps = 4/165 (2%)

Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
            +V             +  P         +V     AP   +        E      K  
Sbjct: 351 VIVEDPAEVTPESVASESVPPSEAAPEPSEVAVSEVAPEPSEVAVSEDNAEVQEETAKDG 410

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
              + +  + +E                   +    A VV DVS+ + V+    +    P
Sbjct: 411 PPSEEEAPVSTEAPVESEPPTSDTPADAEEPSQDEPAPVVEDVSAPEAVV----EAETTP 466

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           +       ++  A   T   +V  P     E   +         +
Sbjct: 467 AAEETSVPVDEPAADSTVKSEVPAPAEVPAETSEAPPDEPESPSE 511


>gi|163786498|ref|ZP_02180946.1| outer membrane protein, ompH family [Flavobacteriales bacterium
           ALC-1]
 gi|159878358|gb|EDP72414.1| outer membrane protein, ompH family [Flavobacteriales bacterium
           ALC-1]
          Length = 369

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 2/155 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +AL +      ++++     K +E            K    E   ++   ++     
Sbjct: 184 KERKALQDEAVVPVANAEKDDRQKALEERKTTREAELAAKRAEREKAAEDRKKQQQELRD 243

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            K+R    RR+ A D       S  S   N         ++     +   ++      + 
Sbjct: 244 AKKREAEERRQKALDARKK--NSKTSEKANTTAKDTTAKVKTIVKNDSTKVKEAVKKDST 301

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           N           E +      D   +K     R+K
Sbjct: 302 NSKKPKTAAQILEEQRQKKVKDREARKKALDDRKK 336


>gi|3858885|gb|AAC72432.1| proliferation potential-related protein [Mus musculus]
          Length = 1560

 Score = 38.4 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 14/199 (7%)

Query: 532 LNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
              +R     YE  + G ++          + F  E+  P+    +   +   +  A   
Sbjct: 596 REWERKYREWYEKYYKGYAVGAQPRPSANREDFSPERLLPLNIRNSPFTRGRREDYAAGQ 655

Query: 591 DKNIECVWQDEALL-PIPKSESLEDIQDNIVSEEST-----GVIRKRRRRRRRRRPATDH 644
                 +  +         S + +D   +   E           + ++ R+RR     + 
Sbjct: 656 SHRNRNLGGNYPEKLSTRDSHNAKDNPKSKEKESENVPGDGKGNKHKKHRKRRNEEKGEE 715

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITN-HNLLENGAHGFTENYDV------SIPPV 697
            ++ +  ++         S  +    +D        E+      E  D       S+   
Sbjct: 716 SESFLNPELLGKFRKCRGSSGIDETKTDTLFVFPSREDATPVRDEPMDAESITFKSVSDK 775

Query: 698 STPEMESSNSSSDPIVKKT 716
              E +     SD   +K+
Sbjct: 776 DKREKDKPKVKSDKTKRKS 794


>gi|262382599|ref|ZP_06075736.1| translation initiation factor IF-2 [Bacteroides sp. 2_1_33B]
 gi|262295477|gb|EEY83408.1| translation initiation factor IF-2 [Bacteroides sp. 2_1_33B]
          Length = 973

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 3/189 (1%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI---EKGSPVQALVNTGHKVGSDSQAP 588
           LN    T+VE+  R G S+       ++D+ + +   E G  +           +  +AP
Sbjct: 12  LNVGINTVVEFLHRNGFSVEDNPNTRISDEQYALLVKEFGKDLPEKDRNFAADRAQKEAP 71

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
           S  +      +            ++   D    +        + +   + +      +  
Sbjct: 72  SVKEEKTAEIKTVIPEEFRPKIVMKGHIDLDGGQHKKQQEEPKAKEEPKVKEEPKVKEEP 131

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
            V +  +               +                E      P V+ P++ES    
Sbjct: 132 KVKEAPAAPAAQAPVKPAQPAQAPTEKKEEKVIVVEVEKEKTVEKQPVVAEPKVESVKPE 191

Query: 709 SDPIVKKTR 717
            +    + +
Sbjct: 192 QEVEKTEEK 200


>gi|195442125|ref|XP_002068810.1| GK17830 [Drosophila willistoni]
 gi|194164895|gb|EDW79796.1| GK17830 [Drosophila willistoni]
          Length = 765

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 38/168 (22%), Gaps = 14/168 (8%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +  +             + +   E   + +        E+        +        +
Sbjct: 3   ASKEELPDVAASDVPIDTVAEEATEEQNLEPDKEQVNENQEAEPKQSQEEIKTAEPSAEQ 62

Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           K     R     +     GV  +  +   N   +S D      D  +             
Sbjct: 63  KEPSSHRLSGAPSSAEPNGVSQEQLTQKSNKQKESGDKLSVVQDQGDAESKGKSKKASLA 122

Query: 689 NYDVSIPPVSTPE-----------MESSNSSSD--PIVKKTRWWKRRK 723
               +  P+   +           +  +  S       KK R  ++RK
Sbjct: 123 EEQAAEMPIEKTQEELEEDEMLDEVVETRKSKQLTDEEKKQRDRQKRK 170


>gi|195152555|ref|XP_002017202.1| GL21650 [Drosophila persimilis]
 gi|194112259|gb|EDW34302.1| GL21650 [Drosophila persimilis]
          Length = 3556

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 41/158 (25%), Gaps = 7/158 (4%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +          +  Q       +           I  +   +  +     E +    
Sbjct: 2704 ENREKQEPEVAAEEAVKQEARKVTRLARNDGQPPAKEIQPA--AKRARKGSSVERTAEAS 2761

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
               R RRR R+P+ +        +V ++ +     S     E  D       E   +  T
Sbjct: 2762 ELERPRRRGRKPSAEVQPILEEKEVITNTRRGRKPSKQSSEEAKDNEAQPKTEEILNPIT 2821

Query: 688  ENYDVS--IPPVSTPEMESSNSSS--DPIVKKTRWWKR 721
            E+   S  +  +  P+     S        K+ R    
Sbjct: 2822 EDNMPSEHVKQMDPPKRNQEESKELLPSTTKRGRGRPP 2859


>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
 gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
          Length = 827

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 2/117 (1%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
            F ++KG   +A               +     +    +++  P   ++  E+       
Sbjct: 641 DFTLKKGRKRKASDADTAVAPPPKSESASASASDAETSNDS--PAAAADESENPDAEAQG 698

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           EE          RR+ RR A     A       +     +   +   +P    + + 
Sbjct: 699 EEPNSKTTTLPTRRQNRRAAAKQAKAAQAGKKKTPSEGANTEAEAEPQPESEQDDDE 755


>gi|302510415|ref|XP_003017159.1| SAP domain protein [Arthroderma benhamiae CBS 112371]
 gi|291180730|gb|EFE36514.1| SAP domain protein [Arthroderma benhamiae CBS 112371]
          Length = 691

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 1/139 (0%)

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
           V   +  P+ +   E V +        +S +     D    +E T   RKR+RR +   P
Sbjct: 180 VKEPAPEPAPEPAQEPVQEPVQEPVKDESVNKTPSTDVEAIKEDTDESRKRKRRSQTPPP 239

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP-PVST 699
           +               Q       ++  E             A       D  +     T
Sbjct: 240 SPRSIALKKARLEEERQQSRSTQEEIKAEERKEEQEAPAAAPAIAEPPARDTDVEMKEGT 299

Query: 700 PEMESSNSSSDPIVKKTRW 718
           P        ++    K R 
Sbjct: 300 PPAPEPKQETEEDESKDRV 318


>gi|330446485|ref|ZP_08310137.1| electron transport complex, RnfABCDGE type, C subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490676|dbj|GAA04634.1| electron transport complex, RnfABCDGE type, C subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 852

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 58/251 (23%), Gaps = 8/251 (3%)

Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNF--GLLEMSRQRIRSSVLESTTKVCTYCKGA 490
            K         + +  +  A   V   S     L   ++ +      E   + C  C   
Sbjct: 365 PKRKELPLHTYEMACIRCSACADVCPSSLLPQQLQWYAKDQNYEKCEEYNLQDCIECGAC 424

Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550
            Y+       +   R  +  +   +   I              +      E E RF  + 
Sbjct: 425 AYVCPSEIPLVQYYRQAKAEIWARSQDEINAERARQRFEAKQARMDRDKAERENRFKKAA 484

Query: 551 NVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608
                               + V+A          + +            +  A      
Sbjct: 485 ETRREEMAKTGGDDAVAAAIARVKAKQAAAQNEKPEVKPAVAAAIAAAKAKQAASAQGAT 544

Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
           SE+L D  +     E     RKR+ R R+             S+ S    V         
Sbjct: 545 SETLPDNSEMAKLRE----ERKRQARERKAEKEAGESTTSASSNDSKKDAVAAAIARAKA 600

Query: 669 EPSDITNHNLL 679
           + +   +    
Sbjct: 601 KKAQQASEQKA 611


>gi|324499657|gb|ADY39859.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum]
          Length = 2707

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 50/199 (25%), Gaps = 14/199 (7%)

Query: 529 LYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
             L+  +      + E   GV + +    +L      +E  S             S    
Sbjct: 747 EQLMEHEADEESLKTEEAGGVELELERTDDL--PETAVESSSGETTRDGKDTAASSVIGN 804

Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG-----VIRKRRRRRRRRRPAT 642
              +   E    +        +E+    +  +  EES         +KR +  RR  P  
Sbjct: 805 VEEEDEDEEEEDETKSSAEVGTEATPSRESTLPLEESRSSHAETTSKKRAKPPRRALPKK 864

Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
              D   VSD  +  + I +      +           +         DV +  V     
Sbjct: 865 RRRDEEEVSDEPADDDFIPEPAKRTRKKVRTKRREKDNDS------FSDVPVEYVEKRRS 918

Query: 703 ESSNSSSDPIVKKTRWWKR 721
             +  +          W  
Sbjct: 919 GRTLGAEKKNYDLQAKWDE 937



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 35/146 (23%), Gaps = 3/146 (2%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P +       +  S     +  K  +   +          E + D   +           
Sbjct: 830 PSRESTLPLEESRSSHAETTSKKRAKPPRRALPKKRRRDEEEVSDEPADDDFIPEPAKRT 889

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           +++ R +RR    D      V  V   ++      +            + E       ++
Sbjct: 890 RKKVRTKRREKDNDSFSDVPVEYVEKRRSGRTLGAEKKNYDLQAKWDEMEEELVE---DD 946

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKK 715
            D     +   E           +KK
Sbjct: 947 NDTPSREIKKEEPSEYIIEKVMSMKK 972


>gi|320032731|gb|EFW14682.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 646

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                  +  Q       I     +E    +P+    E+    +          +R    
Sbjct: 378 AEAEAELAQRQKRRISGRIPEASGEEKPGQLPEQFRGEERPGAVPGTREPAREAERTEES 437

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           +R R      +AG+V+ V        D  ++  +    T    +E       +     + 
Sbjct: 438 KRFREG--DKEAGLVAGVGQPPRKESDREEIPEQFRAETPGQPVEERPQAPVQERVAGMA 495

Query: 696 P--VSTPEMESSNSSSDPIVKKTRWWKRR 722
           P      E        +   K++RW +RR
Sbjct: 496 PGVEEPVEAVPPPHEGEEAHKQSRWARRR 524


>gi|312210769|emb|CBX90855.1| hypothetical protein [Leptosphaeria maculans]
          Length = 787

 Score = 38.4 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/164 (8%), Positives = 41/164 (25%), Gaps = 9/164 (5%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +   +  ++G    +   A     +     +        + +  ++ +     E+   + 
Sbjct: 288 AQATSDPHSGSPQHTRDTAADVSASGSDSERGRLRRKRSREDFEDEGEAEKQPEKRPELG 347

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN---------HNLL 679
            +R RR+R R  + D       +  +  +   +D       P                  
Sbjct: 348 SERHRRKRSRDISRDEIPPTKPAPSTISRIAENDGDGQTNTPKKDDAAATTATDKVSRTG 407

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +     T          +    E    S     + +     ++
Sbjct: 408 TSPKTKRTREQLEEETETTEKNSEGIADSGKTRTESSGERDTKR 451


>gi|313234590|emb|CBY10545.1| unnamed protein product [Oikopleura dioica]
          Length = 682

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 10/202 (4%)

Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
           +G  + +   AL + R   E   +  A   +  T   V     + + A + + EA+    
Sbjct: 352 SGKAKEKIENALKMARKAAEVA-KQKAEIAMTRTQHAVAKASQSDEVAELAKDEAKIARC 410

Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
           +   +  E              +       +     ++ ++ ++ +  ++D +   I   
Sbjct: 411 VAKEMSPEYHQP-----GLEYAKNAREFNGEYQEPRRSETFPQSGDANFRDGSSSQIYD- 464

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
              +    N          R+ ++ R RR        +G  S  SS  N ++     Y E
Sbjct: 465 ---DQQSINSSEHGQRMPRRRPQKSRDRRNSYAQSQLSGSKSPSSSSLNRLNRRAHKYSE 521

Query: 670 PSDITNHNLLENGAHGFTENYD 691
                ++   ++      EN  
Sbjct: 522 NERHRDNRDPQDVEMMEDENGA 543


>gi|288904588|ref|YP_003429809.1| translation initiation factor IF-2 [Streptococcus gallolyticus
           UCN34]
 gi|288731313|emb|CBI12864.1| translation initiation factor IF-2 [Streptococcus gallolyticus
           UCN34]
          Length = 908

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 61/194 (31%), Gaps = 6/194 (3%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
           L +    +VEY    G+++        + +   +++     +            +  S  
Sbjct: 13  LGKSSKEVVEYAQELGLAVK---SHSSSVEESDVKRIVAKFSDKPQSTPAKPKVEKASEK 69

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV---IRKRRRRRRRRRPATDHHDAG 648
              +      A    P+S + +  ++     E+        K+RR  +RR   ++ +D  
Sbjct: 70  TVAQAPKATPATPAKPQSRNFKAEREARAKAEAERRANGGDKKRRNDQRRDDRSNRNDRQ 129

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             +  +  QN  D +   +       N +           ++      +   +    +  
Sbjct: 130 GNAQNNRKQNKRDRNSQNHNRRDQRDNRHDNRQQPAKLRVDFKARAAAIKAEQNAEYSRQ 189

Query: 709 SDPIVKKTRWWKRR 722
           S+  + +    KR+
Sbjct: 190 SENRIHEQENAKRK 203


>gi|223997064|ref|XP_002288205.1| hypothetical protein THAPSDRAFT_261688 [Thalassiosira pseudonana
           CCMP1335]
 gi|220975313|gb|EED93641.1| hypothetical protein THAPSDRAFT_261688 [Thalassiosira pseudonana
           CCMP1335]
          Length = 457

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 6/154 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
            P       G    +  +A +   +I+     E  +P   + S   ++ N     + G  
Sbjct: 165 KPKPISKGKGESKENAVRAKADKDSIKPASTKEQTIPKGTTVSSNAVESNDTPT-AKGEN 223

Query: 629 RKRRRRRRRRRPA---TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
           + +R RRR  +                  +       S  +  E + +T + +  N ++ 
Sbjct: 224 KSKRPRRRSNKANNKYNRQRRQRKEKQSGASSKEKTKSPKVVGESATVTENLVKGNRSNI 283

Query: 686 FTENYDVSIP--PVSTPEMESSNSSSDPIVKKTR 717
            T + + S+       P  E+++++S+  +K T 
Sbjct: 284 NTSDGNNSLKEFKTKQPSSEANDATSESEMKHTG 317


>gi|260817441|ref|XP_002603595.1| hypothetical protein BRAFLDRAFT_93138 [Branchiostoma floridae]
 gi|229288915|gb|EEN59606.1| hypothetical protein BRAFLDRAFT_93138 [Branchiostoma floridae]
          Length = 627

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 49/176 (27%), Gaps = 7/176 (3%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                  D     EK  P         K       P+ ++  +   + +  L   +  + 
Sbjct: 266 KAEPAAEDAKKEAEKEEPKTEPAAEEAKKEEPKAEPAAEEAKKLNKKLKRQLKRQRRRNQ 325

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           +  +           + ++ +R+RRR    +        ++      ++         + 
Sbjct: 326 KLNRQLKRQRRRNQKLNRQLKRQRRRNQKLNRQLKRPRKNLKRRNQKLNRQLKRRKRRNQ 385

Query: 673 ITNHNLLENGAHG------FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             N  L              TE  +    P +  E +     ++P  ++ +  + +
Sbjct: 386 KLNRQLKRQRRRNQKLGQERTEKTEPKAEPAAE-EAKKEEPKAEPAAEEAKKEEPK 440


>gi|195582979|ref|XP_002081303.1| GD10949 [Drosophila simulans]
 gi|194193312|gb|EDX06888.1| GD10949 [Drosophila simulans]
          Length = 812

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 46/157 (29%), Gaps = 2/157 (1%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E+G+  +    T        ++ S D   +   +++A     +S+S    +    ++ 
Sbjct: 203 DVERGAIFKEDKKTATLKDDVKKSSSKDDAWKSRTKEDAKKSFQRSKSPRP-EHLKTTDR 261

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
            +    +R  R R R P  +       +  SS ++    S         +          
Sbjct: 262 KSTAQTRRPDRHRSRSPKQNSRRDHQRNQESSPRHAKRRSHSASPSKIHL-PREKANAIT 320

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
               +  +        P      + S P  K     K
Sbjct: 321 KLTDDETNAQRSKSPVPVTAKLVTESQPAEKIKSNRK 357


>gi|332016788|gb|EGI57609.1| hypothetical protein G5I_14350 [Acromyrmex echinatior]
          Length = 5046

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 56/188 (29%), Gaps = 10/188 (5%)

Query: 533  NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
            N+++  I +         ++        + +           ++T  ++ SD    S D 
Sbjct: 2718 NEEKEEISDLTETN--RFSLRPRRSKNIQHYEESDIEVDIYFMDTSMEINSDEIEDSRDA 2775

Query: 593  NIECVWQDEALLP-------IPKSESLEDIQDNIVSEESTGVIRKRRRRRR-RRRPATDH 644
              +    +E                S +       ++ + G  +K+R R R + R  ++ 
Sbjct: 2776 QKKQNEVEEETNRDTLQDSCTDDKSSQDIEVAKSKTDSTNGTKKKKRGRPRLKNRIISNP 2835

Query: 645  HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
             +A   +++    N    + ++     +    NL        T            P+   
Sbjct: 2836 SNASAPTNLEVNGNDSVATTNLDESKDEDQKLNLDTKERFDKTNKPSYIDANAQPPKRSR 2895

Query: 705  SNSSSDPI 712
                 +P+
Sbjct: 2896 GRPRKNPV 2903


>gi|301783281|ref|XP_002927054.1| PREDICTED: myosin-11-like isoform 2 [Ailuropoda melanoleuca]
          Length = 1972

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 73/242 (30%), Gaps = 19/242 (7%)

Query: 463  GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522
            G +E    R+R +  ++              +   S    + R  +E   +         
Sbjct: 1750 GNMETMSDRVRKATQQAEQLNNELATERSAAQKNESARQQLERQNKELRSKLQ------- 1802

Query: 523  THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582
               ++   + ++ ++TI   EA+        +  ++  +     +     A         
Sbjct: 1803 ---EMEGAVKSKFKSTIAALEAKIA-----QLEEQVEQE----AREKQAAAKSLKQKDKK 1850

Query: 583  SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642
                    +   +   Q +       ++  +  +    +EE +  I   RR+ +R     
Sbjct: 1851 LKEMLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEA 1910

Query: 643  DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
               +  +  +V+++++ +    +    P+  +    +   A G  E  D      +  + 
Sbjct: 1911 TESNEAMGREVTALKSKLRRGNETSFVPARRSAGRRVIENADGSEEEVDARDADFNGTKA 1970

Query: 703  ES 704
              
Sbjct: 1971 SE 1972


>gi|116202565|ref|XP_001227094.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88177685|gb|EAQ85153.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 666

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 46/163 (28%), Gaps = 10/163 (6%)

Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569
               +   N       +++    N+ R  I E E              + D  F I    
Sbjct: 260 MARAFERSNAKYIQEMEMLEGEHNRLRKEIEELEKST-------PDPAVLDNHFKI---M 309

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
                    +   +  ++  Y+  I+ + ++   L     E+ ++ +    + +  G+  
Sbjct: 310 EEDKAKFEEYNTLAMQRSEKYEGRIQVLQEELDKLQGELKEAEDERRHLKDAVDDQGISM 369

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           +   R    R             +  ++  + +      +  D
Sbjct: 370 QDIDRMTAERERLQRSIESAGQRLEDVKRKVAEREMEASQRLD 412


>gi|71412310|ref|XP_808346.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70872532|gb|EAN86495.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 793

 Score = 38.4 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/153 (7%), Positives = 43/153 (28%), Gaps = 2/153 (1%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             +   I   +  + +     +   +++     +      +        + + LE  ++ 
Sbjct: 474 QQQSNDIIWEAKQRRMAAEKERKRLEAEEKERKRLEAEKERKRLEAEEKERKRLEAEKER 533

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              E      R+    + R+R   +  +   +      +  ++       +         
Sbjct: 534 KRLEAEEKERRRLEAEKERKRLEAEEKERRRLEAEEKERKRLEAEEKEQRKEQQHARGEE 593

Query: 679 LENGAHGFTENYDVSIP--PVSTPEMESSNSSS 709
              G           +   P++TP  ++++  +
Sbjct: 594 GVTGGKSQELRSQRRVSGHPINTPRAQNASRGN 626


>gi|257460853|ref|ZP_05625954.1| translation initiation factor IF-2 [Campylobacter gracilis RM3268]
 gi|257442184|gb|EEV17326.1| translation initiation factor IF-2 [Campylobacter gracilis RM3268]
          Length = 902

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 46/174 (26%), Gaps = 3/174 (1%)

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           GV I  +           IEK   +              +  +   +             
Sbjct: 2   GVLIKDIADELGYASKEIIEKAQEMGFKKVKTASNKVSEEEAAAIYDYIQTGILPGKKSK 61

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
           P  +S E  Q++           K+  ++   + A     +G      S +   D+    
Sbjct: 62  PAKKSSEKAQEDENKPAKKQSETKKTAKKESPKKAESLKASGSKESAQSAKEPSDEKTRT 121

Query: 667 YMEPSDITNHNLLEN---GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                        +     A    E    +    +  ++ S +S ++  ++K R
Sbjct: 122 QEPEVKTEKSQNQKEEISSAPQEKEEKQNAASKPAPVQINSGDSIANESLQKRR 175


>gi|302899318|ref|XP_003048026.1| hypothetical protein NECHADRAFT_40195 [Nectria haematococca mpVI
           77-13-4]
 gi|256728958|gb|EEU42313.1| hypothetical protein NECHADRAFT_40195 [Nectria haematococca mpVI
           77-13-4]
          Length = 623

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 9/152 (5%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           P +      +     + A     +      +EA  P  +    +       S       +
Sbjct: 12  PGRKRGRPPNATKPTTSASQDRPDEYEADVEEAARPKQRGRPKKSADTVEQSPPQEEAPK 71

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           ++R R     P+ D  D    ++    +     S +   +  D+    L           
Sbjct: 72  RKRGR-----PSLDSKDGDATAEAQPKRKRGRPSLEKQRDEEDVVEDALK----PKRGRR 122

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              +         E     +    K+ R  K 
Sbjct: 123 SKPTEEQQEEQPDEDEAVENAEKTKRRRGAKP 154


>gi|116003979|ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus]
 gi|115305270|gb|AAI23580.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
 gi|296480316|gb|DAA22431.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
          Length = 876

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 27/220 (12%)

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           L+  +    +  + + +    + +       KR        +    I      EL     
Sbjct: 652 LKENKTLQKKEPSKSSMKKKVTKIAEAKKVMKRNF------KVNKKITFTDEGEL----- 700

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +++   VQ  V+   +   D+   + DK  E + +++        + ++          
Sbjct: 701 -VQQWPQVQKSVSKDTEEEDDAGGINLDKAKERLQEEDKFDKEEYRKKIK---------- 749

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +    ++ + R  RR  +     A    +     +  DD         D   +   E   
Sbjct: 750 AKHREKRLKEREARREASKRQAKARDEEEAFLDWSDDDDDGFDPSTLPDPDKYRSSEESD 809

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSD-----PIVKKTRW 718
               EN    I    T    +++   D        KKT+W
Sbjct: 810 SEDMENKISDIKKKQTMRKRNNSEVEDAGPASRDRKKTKW 849


>gi|313213221|emb|CBY37067.1| unnamed protein product [Oikopleura dioica]
          Length = 1519

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 36/149 (24%), Gaps = 3/149 (2%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I +        +      +       D++ +   + E+       E       +  SE +
Sbjct: 600 IVEQEEQTDESSEHTSDLTTDSEEGPDRSFQPNMESESESESGSEEEEGSTDGSTESERT 659

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
           T    + R   RR    +    A      S        S      PS             
Sbjct: 660 TTSSPRERPVSRRN---SRRSKANARKRRSGAGAKKQKSRKASSTPSPRQAEEKRATVKT 716

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             T     +      P   SS+S SD   
Sbjct: 717 TVTGPKQKTDGQAPGPIFISSSSGSDEET 745


>gi|331220085|ref|XP_003322718.1| hypothetical protein PGTG_04255 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309301708|gb|EFP78299.1| hypothetical protein PGTG_04255 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 3279

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 40/164 (24%), Gaps = 3/164 (1%)

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              + A + F         A   +          P   +      +     P    +  E 
Sbjct: 2293 DPQPALQEFETAPQESEPAPQESESAPQEAEPVPQESEPAPQEPEPAPQEPETAPQESEP 2352

Query: 615  IQDNIV--SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                     +ES    ++     +    A       +    ++ Q       +    P +
Sbjct: 2353 APQEAETAPQESESAPQEPESAPQEAESAPQDPQPALQESETAPQESEPAPQESESAPQE 2412

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                      A    E+      P    E E++   S+P  ++T
Sbjct: 2413 ADPVPQESEPAPQEPESTPHDSQPAPQ-EAETAPQESEPAPQET 2455


>gi|149730773|ref|XP_001501165.1| PREDICTED: similar to Nucampholin homolog (fSAPb) isoform 2 [Equus
           caballus]
 gi|149730775|ref|XP_001501158.1| PREDICTED: similar to Nucampholin homolog (fSAPb) isoform 1 [Equus
           caballus]
          Length = 908

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 43/159 (27%), Gaps = 8/159 (5%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES-------LEDIQDN 618
           E+                  +        + + +  +   +P   +         D + +
Sbjct: 750 EQRHQETRTERERRSEKHRDKNSRDPNWRDPITKYTSDRGVPSERNSYSRVVNDRDQEMH 809

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           +  E   G  RK+R  RR      +H      ++    ++               ++ + 
Sbjct: 810 VDLENKYGDPRKKRGERRNSFSENEHRHRTKDNENFRRKDRSKSREKNKKHSGSRSDEDR 869

Query: 679 LENGAHGFTENYDV-SIPPVSTPEMESSNSSSDPIVKKT 716
            +NGA    E     S     + + +       P  +K 
Sbjct: 870 YQNGAERRWEKSSRYSEQSRESKKSQDRRREKSPTKQKK 908


>gi|134081607|emb|CAK46541.1| unnamed protein product [Aspergillus niger]
          Length = 1129

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 54/207 (26%), Gaps = 2/207 (0%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R  EE   Q +A   +  ++S       N           R   +          +  F 
Sbjct: 53  RIAEEQARQRSAQTSLSRSNSARHPTGRNLSPTRRTSRPRRNTGTPVRGPDPNEFEPEFA 112

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I           T     +     + ++N              K E+    + N    E 
Sbjct: 113 IGDDEGSSR-SATPRLESAGGSEAAPEENTGEGKTSSEESATKKPEAQPVTETNQSPSEL 171

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDITNHNLLENGA 683
              IR + RR  +               +   Q     ++D   +   D  +    + G 
Sbjct: 172 PPEIRVKLRRLGKLESRYQAERDDYKKKLEESQKSTKAAWDEVTKLKEDSKSQAKKDEGP 231

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSD 710
              +   D S P  +    ++S S + 
Sbjct: 232 TSESSATDKSTPDSAAKSGKASTSGAK 258


>gi|331217489|ref|XP_003321423.1| hypothetical protein PGTG_02465 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309300413|gb|EFP77004.1| hypothetical protein PGTG_02465 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1891

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 2/142 (1%)

Query: 555  GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              E++  +   +    +    +   +  S SQ P    + +           P S + ++
Sbjct: 1743 EAEMSPDVSAADAMRGLSIDQSQPAQGTSGSQRP--PDSQKDKEPTPPPNAQPSSAANKE 1800

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                  S+ S   I +R +++  R+P+T   +    S  S        +     E  D  
Sbjct: 1801 NPAPPSSDRSDSPIPRRTKKKAPRQPSTPPSEPQDSSVRSGKNRQPTPTQYSDDEEEDED 1860

Query: 675  NHNLLENGAHGFTENYDVSIPP 696
                 +        N     P 
Sbjct: 1861 EEEDEDGDESAEERNRRRKEPK 1882


>gi|289613707|emb|CBI61548.1| putative HOS4 protein [Sordaria macrospora]
          Length = 1631

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 40/150 (26%), Gaps = 3/150 (2%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE-ST 625
           +      +          S A       +   + +      + E+ +  +  I   E   
Sbjct: 838 RPKKDDKIPTIAVSDREASPAGRVPSKAKRAAEHDVAAASSEGETPKPRRKLISGRELKG 897

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++RR        +     +    +    Q +            D +   L  +G   
Sbjct: 898 EREKQRRASVTSNGSSFRDQSSSPRDECEKPQMMEKYHDRTKAIRRDESRDRLSISGESS 957

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
              +   + PP   P  +  ++S  P  K+
Sbjct: 958 RKRHRSSATPPH--PGSQEKDTSEVPAKKR 985


>gi|195391190|ref|XP_002054246.1| GJ24342 [Drosophila virilis]
 gi|194152332|gb|EDW67766.1| GJ24342 [Drosophila virilis]
          Length = 2780

 Score = 38.4 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 44/180 (24%), Gaps = 12/180 (6%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKNIECVWQDEALL 604
                +      IE       +  T  +  ++S+             DK      +     
Sbjct: 1407 ADERVETPEDTIEDKISATTIAPTSEEASTESEEEPSSTETHVADVDKEPVEDAEKIPAS 1466

Query: 605  PIPKSESLEDIQ---DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                    E +     +  + + +            R    +  D   +    S   +  
Sbjct: 1467 STGTPSEAEKVTTLVPSTDASKPSESTEDSVSATTLRPETEEDQDTKKLHIPLSTTEIST 1526

Query: 662  DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
             S +   +P+D       +       E    +  P +  + E+S+  S      ++    
Sbjct: 1527 KSEEDAKKPTDDETSTEADIDKKPTQEPQITTKAPKTEEDKETSDDISTSAPADSKDQDE 1586


>gi|325958492|ref|YP_004289958.1| hypothetical protein Metbo_0735 [Methanobacterium sp. AL-21]
 gi|325329924|gb|ADZ08986.1| hypothetical protein Metbo_0735 [Methanobacterium sp. AL-21]
          Length = 453

 Score = 38.4 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/202 (10%), Positives = 47/202 (23%), Gaps = 29/202 (14%)

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
           V   +  +K+  I   E                       K      +        S + 
Sbjct: 72  VKPVMTKEKKGPIERIEKSIKPP----------------AKSKTTPKIKPKPSPEVSKAS 115

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT---- 642
             S         Q + + PI      + +  +   E      +      + ++P T    
Sbjct: 116 KASKASPERPEKQLKKIEPIVSRPVPKKVNTSEEKEILEKTTKPPELSGQTKKPVTVARG 175

Query: 643 ---DHHDAGVVSDVSSI---QNVIDDSFDMYMEPSDITNHNLLENGAH---GFTENYDVS 693
               + +   V         Q  I  +     +P    ++             T N   +
Sbjct: 176 LEIQNKEPSKVKPTPKPVTSQPRIVPTPVNKKQPEKTEDNKKSSPVKPVLLKETTNNSET 235

Query: 694 IPPVSTPEMESSNSSSDPIVKK 715
           +     P  +  + S   +  K
Sbjct: 236 VEDKPKPVPKHVDVSKLNLKTK 257


>gi|296824570|ref|XP_002850676.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238838230|gb|EEQ27892.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 867

 Score = 38.4 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 39/181 (21%), Gaps = 12/181 (6%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603
                        E+      L              K  S             +W++   
Sbjct: 425 EPESPFETPEQEQERVREADKLKEKSGLEETPVHLDKSESQEYHSKQRFPSRDIWEEAPE 484

Query: 604 LP--IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI- 660
                   E  ED + N   E+ +      R  R+  R +T+       +    +     
Sbjct: 485 SQQLTASVEIPEDSEKNEKLEKPSLPSLPPRPSRQPDRSSTEEQTDVSPTKTQVVSPTEL 544

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                +   P         +   H   E    +I    T E       + P +       
Sbjct: 545 KKRPSIPDRPKPQVPQRPTKKKNHEAGETLTKTISGEPTDEAVRPVPRAKPAIPPRGVGP 604

Query: 721 R 721
           +
Sbjct: 605 K 605


>gi|306823202|ref|ZP_07456578.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|309801655|ref|ZP_07695776.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304553834|gb|EFM41745.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|308221787|gb|EFO78078.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 704

 Score = 38.4 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 3/134 (2%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  E+    +   +  H    + +        E   +        ++ + E+  +N   +
Sbjct: 491 FKSERSDRNER--SERHSDTYEERFKPARNRAERRAEKFRGRDNREALAREERWENPEVQ 548

Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           E+     +R+R  +RR      H+    ++    Q                   +  +  
Sbjct: 549 ETHRDEHERKRNDKRREKYARLHEQQ-RTEADEPQEFGRRGSSGKKAKQSRKQFDKRQGA 607

Query: 683 AHGFTENYDVSIPP 696
                   D     
Sbjct: 608 PSKKQRKADAREQR 621


>gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 459

 Score = 38.4 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 31/245 (12%)

Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV----IG 555
           A+ + R     +       +    + D V Y     ++ ++E+  +  V ++ +      
Sbjct: 139 AIYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNFKSKLIEWSQKNRVKLDFIVKEQGK 198

Query: 556 IELADKLF------------------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
            +     F                    E       L     K         +    E  
Sbjct: 199 DKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLERLKKEPQFIDRVFAAKAERT 258

Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657
             +++     K+ + + +    V   +      +   +   +   +  +    +  ++ Q
Sbjct: 259 KNEDSAEGNDKAATTQLLP---VKPANGPQTAPKESAKASVKETANEANKPKANLPTAEQ 315

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                +      P +       E      T N          PE+ SS         KT+
Sbjct: 316 AERSATQRTTERPEERAAEKKAERANERKTRNDAQRDKVTDKPEVPSSAEE------KTK 369

Query: 718 WWKRR 722
             +RR
Sbjct: 370 KQERR 374


>gi|241607902|ref|XP_002405902.1| condensin, putative [Ixodes scapularis]
 gi|215500699|gb|EEC10193.1| condensin, putative [Ixodes scapularis]
          Length = 1545

 Score = 38.4 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/128 (8%), Positives = 30/128 (23%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E+          G      S + +     +             SE          +    
Sbjct: 1265 ERLGEEAEQPPEGPAARVVSPSETPKGRKKKANAASPTGKQRSSEGPAARGTTSSARRGA 1324

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               +    ++RR+R      +    ++ S   +    S +     S   + +     +  
Sbjct: 1325 SAGQTSSTKKRRKRAEKQPEEELEQAETSPDGSERLQSVEEGTCGSPAGSESHEPPVSPS 1384

Query: 686  FTENYDVS 693
             +   +  
Sbjct: 1385 ESSADEAP 1392


>gi|156037708|ref|XP_001586581.1| hypothetical protein SS1G_12568 [Sclerotinia sclerotiorum 1980]
 gi|154697976|gb|EDN97714.1| hypothetical protein SS1G_12568 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1035

 Score = 38.4 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 61/233 (26%), Gaps = 8/233 (3%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +R        + R+  +   +    +       D+  Y    K  T+ + EA+   ++ 
Sbjct: 719 KLRITGKRIDHLERAFRKEEAKKLPADYEAQRQRDLAAYEKT-KAQTLKDAEAKHAENVA 777

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-DEALLPIPKSE 610
           +   +      +   +    +       K   D++     +  +   +  E  +   +  
Sbjct: 778 LKHRLARLVSHYESFRDDIAERRHEEFDKRRRDAEKELEKQVAQRRKEFKERKIREKRER 837

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
             ++ +     E +     ++  R  +R+       A    +      +         E 
Sbjct: 838 EEQERKLREEEERAQKEKAEKDEREEKRKAEFAQLKAIREKERQEALEIAALQERRAEEA 897

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           S             G        I    +     +  +      K  W ++ +
Sbjct: 898 SKRRAEEKARGPVRG------APIERSDSTGERRAPLALAGASGKINWREKER 944


>gi|270009789|gb|EFA06237.1| hypothetical protein TcasGA2_TC009087 [Tribolium castaneum]
          Length = 1411

 Score = 38.4 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 85/286 (29%), Gaps = 14/286 (4%)

Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498
           VE  + E  K+D  + +   +S   ++E   + +++S LE         +    +++  +
Sbjct: 659 VEAAVHEPPKQDVEKSEADKVSQTDIVEKESKIVQTSELEKDQVEENVQE----VKAAET 714

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558
               I+  VE    +     +      +     ++ ++    + + +   ++      + 
Sbjct: 715 QVREIVEKVELKKNEKVIEQLQEKITDESKEKGVSVEKE--KDLDKKSDETV-----DQT 767

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
             +   +E+      L         +    +         Q   ++   +    +   + 
Sbjct: 768 TKEEKSVEESKDENDLKEVETTQEFEIVDENEKGGKVVTEQKLEIVEEKEKSLEKPEDEE 827

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
               E      K      +    T+H       +  +I +  ++  +   +         
Sbjct: 828 KQVIEEKSSEEKNVEGESKNAEETEH--VTQKKEDETIVSKKEEFEEKTDKEERSNAAET 885

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW-WKRRK 723
           L++   G  E+           + ++          K R   K+R+
Sbjct: 886 LDDKPPGNGEDVSAKSETEKNLDEKAKEKKLKKQKMKKRSERKKRQ 931


>gi|198450134|ref|XP_002137035.1| GA26805 [Drosophila pseudoobscura pseudoobscura]
 gi|198130906|gb|EDY67593.1| GA26805 [Drosophila pseudoobscura pseudoobscura]
          Length = 1069

 Score = 38.4 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 31/120 (25%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
               L        +D++  S ++       +        SE      +N  +  +     
Sbjct: 188 SEDELPPPTKPEINDAEEVSDEELPAPQRAELPADAEVISEDELPSNNNNNNNNNNAGEP 247

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           K   +R+  +   +          S   +  + S + Y   S  T  N           +
Sbjct: 248 KTSTKRKAEKEQAEEAKDNAEQKSSEAASTREKSVEQYNPGSPTTESNDAPPSEKRPKVD 307


>gi|302797639|ref|XP_002980580.1| hypothetical protein SELMODRAFT_444593 [Selaginella moellendorffii]
 gi|300151586|gb|EFJ18231.1| hypothetical protein SELMODRAFT_444593 [Selaginella moellendorffii]
          Length = 1036

 Score = 38.0 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
           EA   + +      I  ++ +   T   R++  ++R R+  + +    V  + ++     
Sbjct: 820 EAFAEMIQFRKGSQILASLENLRRTSHTRRKEEKKRSRQTESGNDAKRVKMEQTAKAAEE 879

Query: 661 DDSFDMYMEPSDITNHNLLENGAHG---FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
               +   +P        L+         +E   V+ P     E + +   ++    + +
Sbjct: 880 TPKTEEEKQPVADAMEETLKPEKENEDTESEARAVTPPTSEAKEAKETKEVNEGEQDEKK 939


>gi|302658303|ref|XP_003020857.1| hypothetical protein TRV_05035 [Trichophyton verrucosum HKI 0517]
 gi|291184724|gb|EFE40239.1| hypothetical protein TRV_05035 [Trichophyton verrucosum HKI 0517]
          Length = 1017

 Score = 38.0 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 7/178 (3%)

Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-----APSYDKNIECVWQD 600
            G   +++    +A      E+ +  Q+ +          +                   
Sbjct: 21  NGKRPDIIGDANVAVPRLTPEQNAQGQSDLYKSKWATPVDEYQTAWEKILAGKGGPSASQ 80

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR--RPATDHHDAGVVSDVSSIQN 658
                +P + S    Q    +++ T   ++ + ++R    +P+T         D  +  +
Sbjct: 81  ITQAAVPAATSGAKQQPPTSTDKPTAGKQESKGKQRATTQQPSTSPQKIDRADDGHNKPS 140

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
               S    +  +     +  +          D   PP  T +     +S  P  +  
Sbjct: 141 SQKGSSGKTLSANPPKPASTDKKNMAVGEGPSDSRRPPPVTSQQSQPATSLPPASEND 198


>gi|34540167|ref|NP_904646.1| transcription termination factor Rho [Porphyromonas gingivalis W83]
 gi|34396479|gb|AAQ65545.1| transcription termination factor Rho [Porphyromonas gingivalis W83]
          Length = 658

 Score = 38.0 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 9/170 (5%)

Query: 532 LNQKRA-TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           LN+K    +       G     +       K   I K    QA+   G +          
Sbjct: 9   LNEKAEAELAAIAGELG-----IANAGSMPKQELIYKILDEQAISVAGVRKEKQKTTEDR 63

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
                   +          ES +         +     +++R R R+   A +       
Sbjct: 64  HTERRKPGRPRKNAEEEAPESEDVAAAPAEPNDEEAQAKRKRGRPRK---AAEEIAEETR 120

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
            DV  +  +         E          +       +    ++P  +  
Sbjct: 121 EDVQQLVALAAAEETNATEKESAGRKPAAKTSTASPAKAPAKALPRPAET 170


>gi|325115929|emb|CBZ51483.1| putative Tyrosine kinase-like (TKL) protein [Neospora caninum
            Liverpool]
          Length = 3634

 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 24/182 (13%)

Query: 536  RATIVEYEARFGVSINVVIGIELADKLFYIEKG--SPVQALVNTGHKVGSDSQAPSYDKN 593
               + + E   G+ ++ V   +   +   +++   +   A           S   S + +
Sbjct: 2631 NEEVEKSEREAGLGVSPVGDKQ-HRQHADLDRLLLAASGASAFVSLTGTPSSAVSSTELD 2689

Query: 594  IECVWQDEALLPIP----------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
            ++  ++    L             KS++         SEES    R+ R ++R R   TD
Sbjct: 2690 LDAFFEFREKLGKGSFGEVWRVRLKSDTQALAFPRKASEESKEDGRRNREKKRCRDDKTD 2749

Query: 644  HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703
              D              D++     E  +    +  E     +T      +  + T    
Sbjct: 2750 AADRE-----------KDETLGTEAEEGEKERTDRREEKPDAWTRTTQEPLENLETERAR 2798

Query: 704  SS 705
              
Sbjct: 2799 PE 2800


>gi|323698575|ref|ZP_08110487.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323458507|gb|EGB14372.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 645

 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 24/111 (21%), Gaps = 4/111 (3%)

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
           DE   P    +       +    E       R+R  R RR      +       +     
Sbjct: 444 DELYQPTLHGKPAAPDTASEAQREPQRERPARKRGGRNRR----SDEPSGERRQARPAPA 499

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
                    +P         E+              P    E E+    ++
Sbjct: 500 ETADEPSQAKPRPSEGRQPREDRQPREDRQPREDRQPREEREPEARPGEAE 550


>gi|321458358|gb|EFX69428.1| hypothetical protein DAPPUDRAFT_300962 [Daphnia pulex]
          Length = 728

 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 31/109 (28%)

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
           +++         +    +  +++ +   R +R  R RR   +   +     D S  ++  
Sbjct: 604 KSVSRSTDKPREDSKLSSKHADDGSREDRPKRIERSRREEHSRKEEYSRREDHSRREDHS 663

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                   E    T  N  +          D    P    +   S SS 
Sbjct: 664 RKEEHSRQEGRRRTESNEGKRTERRTRTPEDKGRDPKYPDDQGKSKSSR 712


>gi|198453881|ref|XP_002137752.1| GA26361 [Drosophila pseudoobscura pseudoobscura]
 gi|198132554|gb|EDY68310.1| GA26361 [Drosophila pseudoobscura pseudoobscura]
          Length = 3514

 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 41/158 (25%), Gaps = 7/158 (4%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +          +  Q       +           I  +   +  +     E +    
Sbjct: 2666 ENREKQEPEVAAEEAVKQEARKVTRLARNDGQPPAKEIQPA--AKRARKGSSVERTAEAS 2723

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
               R RRR R+P+ +        +V ++ +     S     E  D       E   +  T
Sbjct: 2724 ELERPRRRGRKPSAEVQPILEEKEVITNTRRGRKPSKQSSEEAKDNEAQPKTEEILNPIT 2783

Query: 688  ENYDVS--IPPVSTPEMESSNSSS--DPIVKKTRWWKR 721
            E+   S  +  +  P+     S        K+ R    
Sbjct: 2784 EDNMPSEHVKQMDPPKRNQEESKELLPSTTKRGRGRPP 2821


>gi|270266183|gb|ACZ65024.1| PspC [Streptococcus pneumoniae]
          Length = 686

 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 43/158 (27%), Gaps = 9/158 (5%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+G P + +        +       D         E  LP P  +  + + +        
Sbjct: 252 EQGEPKRRVKRGALGEQATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVAEA 311

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               K ++   RR   T+ +    +    S   V     ++  E +    +      A  
Sbjct: 312 EKKAKAQKEEDRRNYPTNTYKTLELEIAGSDVEVKKAELELVKEEAKEPRNEEKVKQAKA 371

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E+       +   + +          KK     +RK
Sbjct: 372 EVESKQAEATRLEKIKTD---------RKKAEEEAKRK 400


>gi|242216366|ref|XP_002473991.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726856|gb|EED80792.1| predicted protein [Postia placenta Mad-698-R]
          Length = 574

 Score = 38.0 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 14/231 (6%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
           +   Q+  A    R +EE  +      I V         L  +        E     +  
Sbjct: 92  WREQQTRQADEGWREMEEMRIAEDTPLIRVQEELAAAERLQKEAEDRARRAEDERQRA-- 149

Query: 552 VVIGIELADKLFYIE--KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
                 L  +   I   + +    L+    ++ +  +     ++     +DE      + 
Sbjct: 150 --EEERLQAERQKILEMRIAEDTPLIRVQEELAAAERLQKEAEDRARRAEDERQRAEEER 207

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
              E  +      ++    ++RR    R+R   +   A         +            
Sbjct: 208 LQAERQKILADEAKAAAEEQRRRAEEDRQRSDAERKKAN--------EEAQSAVAGKEKA 259

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
            +   +       A    +    ++     P +  +    +   K+  + +
Sbjct: 260 EAARADAQRAAAEARAEMQKTKDALKKGIKPVIVPTREEYEATKKRLGYQE 310


>gi|313218555|emb|CBY43072.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score = 38.0 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/185 (10%), Positives = 49/185 (26%), Gaps = 6/185 (3%)

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
            + ++   E      + +      +   + +          N+  K GS ++A    K  
Sbjct: 42  DQDSVARLEYDHATILLIKPTALFSPSNYDV-----ANRKKNSSLKSGSSNEATKTAKKE 96

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
               +++ ++           +    S      +    +  R +  A    +    +   
Sbjct: 97  NDEKEEDLIVVGEIVSPRPLRKARKDSARGGEAVDPSFKIERDKEVAPASEERVRRTSAR 156

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLL-ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
              +  D   +    P  IT             T     S   V     + ++   +   
Sbjct: 157 LSGSFSDKIKEAANSPERITKRKRNLSTTNENQTTRSSRSSSLVRNRNSKMNSPKIESAK 216

Query: 714 KKTRW 718
           K+T+ 
Sbjct: 217 KETKT 221


>gi|301609938|ref|XP_002934517.1| PREDICTED: hypothetical protein LOC100492719 [Xenopus (Silurana)
           tropicalis]
          Length = 1028

 Score = 38.0 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/223 (7%), Positives = 51/223 (22%), Gaps = 31/223 (13%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R + +  +      + +   +        Q +    E E +                   
Sbjct: 760 RRMVKRGIGAKKKVVPIRGPAKTGTSSKEQSKKEDSEAEKKTMK---------------- 803

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
                    +            +       + +   +  + +  ++  + ++    +++ 
Sbjct: 804 ---------VKPPVKDPAKTGASSKEQAQKKDLEAGKKAIEVSSAKKAQPVKGPAKTQKR 854

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT------NHNL 678
                 + RR  +R          +     +  +  + S     E             + 
Sbjct: 855 PLKRSSQPRRTVKRGIGAKKKVVPIRGPAKTGTSSKEQSKKEDSEAEKKVMKVKPPVKDP 914

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
            + GA    +               SS   + P+    +  KR
Sbjct: 915 AKTGASSKEQAQKKDFEAGKKAIEVSSAKKAQPVKGPAKTQKR 957


>gi|198428558|ref|XP_002125219.1| PREDICTED: similar to polypyrimidine tract binding protein 2 [Ciona
           intestinalis]
          Length = 1029

 Score = 38.0 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 35/150 (23%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           +K        +      + S   + D       ++       +       ++   SE   
Sbjct: 533 DKRGRDDRGRDAREDRPARSARDTRDDRSRKSLENSRSNNSAEKRVAPRSEEKRRSERER 592

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+R   + RR+  +   +    +          D+                + G   
Sbjct: 593 DSGRRRTPDKDRRKRESRRSNERKRTTDRKPNETTSDANKSSDPKKSSEQKKSSDAGKLS 652

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                      +   E E  +  +  +  +
Sbjct: 653 EKIVEKEEKEEIKMKEEEKQDGEAGKVKDE 682


>gi|37526280|ref|NP_929624.1| electron transport complex protein RnfC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785711|emb|CAE14696.1| Electron transport complex protein RnfC [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 852

 Score = 38.0 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 57/251 (22%), Gaps = 13/251 (5%)

Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL-----QYTAHN 518
           L   SR +      +     C  C    Y+   +   +   R  +  +         +  
Sbjct: 396 LYWFSRGQEHEKARDHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQENRRSTE 455

Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578
             +   +         +R  +   E R   S   V   + +     + +    QA     
Sbjct: 456 AKIRFEAKQARM----EREKLARDE-RHKKSAVQVDNKDKSAVQDALSRVKEKQANAGKV 510

Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638
                  Q P     I      +  L   ++E       +I   E T     R+      
Sbjct: 511 -VAIEPGQLPDNAAVIAARQARKEQLRARQAEKQAVENMSITPSEPTSAEDPRKAALAAA 569

Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--DITNHNLLENGAHGFTENYDVSIPP 696
                   A      +      +       +           +        +   ++   
Sbjct: 570 IARAKAKKAAQNQSETPSPEAREPETTTSEKQDLHKDAVAAAIARVKAKKAQTQPLTETQ 629

Query: 697 VSTPEMESSNS 707
             TP  E ++ 
Sbjct: 630 AETPPAEETDP 640


>gi|313238286|emb|CBY13372.1| unnamed protein product [Oikopleura dioica]
          Length = 1487

 Score = 38.0 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/166 (9%), Positives = 46/166 (27%), Gaps = 18/166 (10%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES------- 624
           +        +  +S     D++ E   +++ +    K + L D    I S+E        
Sbjct: 425 KRPEKAKEVIDLESSPEPVDRDSENGSEEDPVKTKKKRDRLLDSSKIISSDEEFINNLKK 484

Query: 625 -----------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                          R++++R        +  D      +   +  +D S +        
Sbjct: 485 QGKKKRKLSTQEEEQRRKKKRIENSSEDENSEDGIGNKHIRKRRTKVDTSDEDEAGSDKE 544

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719
                 +       +    S   +   ++     +++   K+ +  
Sbjct: 545 NIDEEEDGDGKKKKKEKAKSRKIMGDEKLSEETKAAEKAEKERKIR 590


>gi|293357409|ref|XP_238235.5| PREDICTED: filaggrin [Rattus norvegicus]
          Length = 804

 Score = 38.0 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 3/117 (2%)

Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
           +          ES +  + +    E      +RR RRR         +    S      N
Sbjct: 87  ETSKKRRSQTKESGKRNEHDYKGYEERREKVQRRHRRRNSGTDGKQENERSKSP-RGRGN 145

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
               S  +  E     N +      H  +          S  + + + S     VK+
Sbjct: 146 KRRGSSTISEESDTNRNSDTENKRHHHGSNRRQRRGSNSS--DRKETRSKKHREVKE 200



 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 2/159 (1%)

Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594
           K     +    F   ++V    ++    + +      QA   T  K  S ++        
Sbjct: 46  KNPNDQDIAEVFMQMLDVDHDDKIDFTEYLLMVLKLAQAYYETSKKRRSQTKESGKRNEH 105

Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
           +    +E    + +     +   +   E         R R  +RR ++   +    +  S
Sbjct: 106 DYKGYEERREKVQRRHRRRNSGTDGKQENERSKSP--RGRGNKRRGSSTISEESDTNRNS 163

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
             +N          +     + +  E  +    E  + +
Sbjct: 164 DTENKRHHHGSNRRQRRGSNSSDRKETRSKKHREVKERN 202


>gi|85110788|ref|XP_963632.1| hypothetical protein NCU06791 [Neurospora crassa OR74A]
 gi|18376000|emb|CAB91734.2| hypothetical protein [Neurospora crassa]
 gi|28925318|gb|EAA34396.1| predicted protein [Neurospora crassa OR74A]
          Length = 659

 Score = 38.0 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 3/134 (2%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           + +   V       ++     + P+  K  E                 E   +++    +
Sbjct: 1   MTRMKEVSTAPEIPNQKRKRGRPPNASKAGEDASGRAEETTRRPKPVEEAQAEDVGGASN 60

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
            G  ++ R ++    P T+  +      V   Q+             +  N         
Sbjct: 61  PGPKKRGRPKKT---PHTEPQEEVSAPAVVEKQSKRGPKAREETIAEEPLNPRKRGRPLK 117

Query: 685 GFTENYDVSIPPVS 698
              E+   + P   
Sbjct: 118 DRAEDVSTNAPAEE 131


>gi|332209478|ref|XP_003253841.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 1
           [Nomascus leucogenys]
 gi|332209480|ref|XP_003253842.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 2
           [Nomascus leucogenys]
          Length = 908

 Score = 38.0 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +  + E  +  +  
Sbjct: 718 RKKRHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 763

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        S    D    +  +        +++R
Sbjct: 764 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 823

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++      +  S      D S    +        ++ +  +NGA    E   
Sbjct: 824 GERRNSFSENEKHTHRNKDSENFRRKDRSKSREINRKHSGSRSDEDRYQNGAERRWEKSS 883

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 884 RYSEQSRESAKNQDRRREKSPTKQK 908


>gi|332018684|gb|EGI59256.1| Splicing factor, arginine/serine-rich 17A [Acromyrmex echinatior]
          Length = 615

 Score = 38.0 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 38/139 (27%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
               ++          A       +   ++EA     + +  ++  D++          +
Sbjct: 277 SDNSISHRDFERKRLIAQDNLAAEKMRKREEAEKKRQEEQRKKEEADSMAKANRQRNREE 336

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           +R+R+   +      D   +      Q +I     +          + ++          
Sbjct: 337 KRKRKALTKFRKQEEDKVSMKIAREEQKLIKAQRQLESIRLLDELFDRIKTKVEKKEIKL 396

Query: 691 DVSIPPVSTPEMESSNSSS 709
           D ++   S  +   +N   
Sbjct: 397 DQNMEKKSEKKNNQTNEKK 415


>gi|71000850|ref|XP_755106.1| mRNA splicing factor RNA helicase (Cdc28) [Aspergillus fumigatus
           Af293]
 gi|66852744|gb|EAL93068.1| mRNA splicing factor RNA helicase (Cdc28), putative [Aspergillus
           fumigatus Af293]
          Length = 1120

 Score = 38.0 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 42/168 (25%), Gaps = 17/168 (10%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624
           ++             +  D    +     + V  +       + +  +D       +E  
Sbjct: 80  DRSDAASKKKYRLVDMEPDLTDAASSLGPQNVEAERDKQRRREKDKDKDRSRGRSEKEDS 139

Query: 625 -----------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                       G   ++R ++ RRR   D  D     ++               + S  
Sbjct: 140 RRKRDRSRSRDEGSRERQRSKKLRRRAVGDFEDRWGDEEIPDDDYDDRGGEGQDFDESPP 199

Query: 674 TNHNLLENGAHGFTENYD-----VSIPPVSTPEMESSNSSSDPIVKKT 716
               L +  A   +   D              ++E  +  +  + KK 
Sbjct: 200 KRTRLEDGSASPRSTASDELDPETKKELERKRDLEERDELAKRLAKKD 247


>gi|300122625|emb|CBK23193.2| unnamed protein product [Blastocystis hominis]
          Length = 1081

 Score = 38.0 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 41/168 (24%), Gaps = 19/168 (11%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                     ++ +   +K         A      S +  + +      ++     +++R
Sbjct: 62  PSTNSEGSQKNNPSTKGEKQKSSQQAKPARKEALASAATMNPEAAEFLPQTQSEAPRKQR 121

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------G 685
             RR    ++    G  S   +      +      +P     +N     A          
Sbjct: 122 SSRRNGKRSEKPVGGSNSSQGAEAIPKTEEAASKPKPRRSRKNNKKPAAAQPAQNAQLVQ 181

Query: 686 FTENYDVSIPPVSTPEM-----------ESSNSSSDPIVKKTRWWKRR 722
             +    + P                        +    KK+R+ K+R
Sbjct: 182 GAQPAQEAQPAQEAQPNQPNQPNQPAQGAQPAQPAKQTPKKSRFAKKR 229


>gi|256997200|dbj|BAI22793.1| mKIAA0536 protein [Mus musculus]
          Length = 1011

 Score = 38.0 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 33/149 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q  V        +         I+   +   +    +  S +      + ++S    
Sbjct: 251 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 310

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ +R                +     + S       S        +        
Sbjct: 311 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 370

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +     S      S + S     K+R
Sbjct: 371 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 399


>gi|320542600|ref|NP_649988.2| CG42795, isoform B [Drosophila melanogaster]
 gi|318068753|gb|AAF54511.3| CG42795, isoform B [Drosophila melanogaster]
          Length = 3068

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 6/183 (3%)

Query: 534  QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
            +        E +  V  +     +         +            +    +   +  + 
Sbjct: 1062 ELEDRFNALERKMSVQKSSPSKNKKEPPD----EEESKSTKEPEEPEESEKANEKTSGRQ 1117

Query: 594  IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
                 +D       KSE+ E+       +E   V   +      +  +++  +     + 
Sbjct: 1118 TPIAKKDSKDSDQKKSETKENQSPTKNQDEKVKVKSPKSEEMIEKETSSNPKEDS--HES 1175

Query: 654  SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             +  N   +                    A G            +  +      S     
Sbjct: 1176 EAATNKKVEGNRELSSEKGDHKIKEKSEEAPGKAGKETAETKNANVKDSSKKGDSQKNEA 1235

Query: 714  KKT 716
             KT
Sbjct: 1236 AKT 1238


>gi|313244562|emb|CBY15320.1| unnamed protein product [Oikopleura dioica]
          Length = 1024

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 54/245 (22%), Gaps = 15/245 (6%)

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           +I+  V +  + V +   G   I+S  S   + L+S                    V   
Sbjct: 522 QIKEGVDQGKSYVSSAITGTELIKSSDSFESTPLKSP---------GVASESEPPTVTPQ 572

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
             +     ++         I V    +   +   + +    +       +       P  
Sbjct: 573 ASDLDDDALMALAKE----IVVPGDKKKQKQATPVPRKLEAEKEKTPSTRARRSRVMPPR 628

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           + + E     E  L  P    +  ++        +   R +R RR      T        
Sbjct: 629 EDSSEESSGPEDRLTSPLKPRV--LKKRKQESAKSSEDRPKRIRRGNTPEPTVETTTPSR 686

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
              +                       L  +      +            E     +   
Sbjct: 687 PQRTRGGPTSASRSRKTEPSEPKLPDRLTRDETPKGRQTRREGSRATPKVEKTEPKTIKR 746

Query: 711 PIVKK 715
              K+
Sbjct: 747 EQRKE 751


>gi|301611388|ref|XP_002935224.1| PREDICTED: WD repeat-containing protein 60-like [Xenopus (Silurana)
           tropicalis]
          Length = 1072

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 32/132 (24%)

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           +  S D ++E    +     +   +   + + +             R RRR  R   +  
Sbjct: 187 ERSSEDVDVERRKSERKHKEVSSEDVDRERRRSERKHRERSKEDADRERRRSERKHRERS 246

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
                 + S  ++    S ++  E           +      E            E  S 
Sbjct: 247 TEDEGRERSEQKHKERSSENVDEERRKSERKTKELSSEDVDWERRRERKHREKYLEDASV 306

Query: 706 NSSSDPIVKKTR 717
           +        K  
Sbjct: 307 DGERRRREGKHG 318


>gi|148708948|gb|EDL40894.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast), isoform CRA_a
           [Mus musculus]
          Length = 1021

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 33/149 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q  V        +         I+   +   +    +  S +      + ++S    
Sbjct: 261 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 320

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ +R                +     + S       S        +        
Sbjct: 321 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 380

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +     S      S + S     K+R
Sbjct: 381 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 409


>gi|37543028|gb|AAL68925.1| p53-associated cellular protein PACT [Homo sapiens]
          Length = 1625

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +       K  +         +   V + E    I K       + +   E S      
Sbjct: 835 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 891

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 892 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 951

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                     + +  N  + P+  K    KR+
Sbjct: 952 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 983


>gi|115447101|ref|NP_001047330.1| Os02g0598200 [Oryza sativa Japonica Group]
 gi|75125337|sp|Q6K5K2|Y2982_ORYSJ RecName: Full=B3 domain-containing protein Os02g0598200
 gi|47847640|dbj|BAD22126.1| unknown protein [Oryza sativa Japonica Group]
 gi|113536861|dbj|BAF09244.1| Os02g0598200 [Oryza sativa Japonica Group]
 gi|215768515|dbj|BAH00744.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1048

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 61/224 (27%), Gaps = 9/224 (4%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
           R+             +  L+  A+     +  D+      +K+       +R  +  N+ 
Sbjct: 32  RNGDDEEKKYSHHDMKNNLRNDANEEKRKSSDDMRDGDFEEKKKC-----SRHDMKKNLR 86

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                       +    ++   +   K        +   + +   +  +       +  +
Sbjct: 87  NDAN----EEKRKSSDDMRDGDDEEKKCSRQDMKKNLRNDADEEKRKSSDDMRDGDDEEK 142

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
             +     ++++       +R+R+R+ + D   + V        +  D   +        
Sbjct: 143 KKRSRHDMKKNSRNDADEEKRKRKRKCSDDLKKSVVNDASKEATSHSDWRKNRKAGSDAE 202

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                L NG          +       +++   +S+    K  +
Sbjct: 203 QRGKKLLNGDKKAKSRKVTTPFFEKMRKIKMQRTSNQNGEKNMK 246


>gi|315586944|gb|ADU41325.1| 30S ribosomal protein S1 [Helicobacter pylori 35A]
          Length = 552

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%)

Query: 57  AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105
           AFVD G +  GFL   EI  D        Y  +       ++      +    ++     
Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359

Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164
                 +        LE                 +           D      +      
Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419

Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224
             +  I ++ K  + + +                + + +     ++     G  I+    
Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479

Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284
           + + +       +  E+  G  +        ++  +++     L R  +     A N+  
Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCMVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539

Query: 285 PHLVYEE 291
             +   +
Sbjct: 540 DKMTLGD 546


>gi|193210031|ref|NP_508662.2| hypothetical protein F35A5.1 [Caenorhabditis elegans]
          Length = 1987

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 40/163 (24%), Gaps = 7/163 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    + +  T  +  +   A             E     P+  S +         ++  
Sbjct: 573 RDPSPKKVAPTAPEKKTPVLAKKEPAGPADSKTKEPEKSKPRDPSPKKAVPAKPVPKTEV 632

Query: 627 -----VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
                   +   + +   P     ++ VV        V         + +     +L E 
Sbjct: 633 APAAVKKPEPISKPKDTAPKKAEPNSPVVPPTPVKNPVKKWKPPWEDDDAPAKPVSLPEP 692

Query: 682 GAHGFTENYDVSIPPVSTPEMESSN--SSSDPIVKKTRWWKRR 722
                         P S    +  +  SS DP + K    K R
Sbjct: 693 EKKTPVLAKKAPTKPDSEAAADPVSGPSSKDPKLAKKAPVKPR 735



 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 36/159 (22%), Gaps = 12/159 (7%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
               +            +    +    E   +    +  P     +         E     
Sbjct: 869  KKAEPNSPVVPPTPVKNPVKKWKPPWEDDDEPTEEVKKPSEPEKKTPVLAKKEPEKPKDA 928

Query: 629  RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT- 687
             K   + R   P     +       +  +++           +       ++N    +  
Sbjct: 929  PKVAAKPRDPSPKKAVPEKEPAKVAAKPRDLSPKKAIPIPANTQEAPPTPVKNPVKKWKP 988

Query: 688  --ENYDVSIPPVSTPEMESSNSS---------SDPIVKK 715
              E+ D    PVS PE E               DP  KK
Sbjct: 989  PWEDDDEPAEPVSAPEPEKKTPVLAKKAPAKPRDPSPKK 1027


>gi|189467234|ref|ZP_03016019.1| hypothetical protein BACINT_03619 [Bacteroides intestinalis DSM
           17393]
 gi|189435498|gb|EDV04483.1| hypothetical protein BACINT_03619 [Bacteroides intestinalis DSM
           17393]
          Length = 687

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 55/200 (27%), Gaps = 9/200 (4%)

Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565
             EE + +      I      V    L ++R    + + R  V++               
Sbjct: 31  KKEELVYKILDEQAIAGATKKVAAEKLKEERKVDRQ-QKRTRVTVK------KESTDKVF 83

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
                            + ++     + ++    +    P+ + E      +     E+ 
Sbjct: 84  TANKNGDLTKAKAEASVAAAKVQPVAEAVKAPVTEAPKAPVTEKEVAVTATEAPEKAETP 143

Query: 626 GVIRKRRRRRRRRR--PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
              +++  R R+ +            V+     +    +       P  I    + ++  
Sbjct: 144 NSTKRKPGRPRKAKVEEKAPIPAPVPVAKKEEPKKAEPELNFETEAPKVIKKVVVEDSPI 203

Query: 684 HGFTENYDVSIPPVSTPEME 703
               E+  + I  + T ++E
Sbjct: 204 LSEPEDDFIPIEDLPTEKVE 223


>gi|119479549|ref|XP_001259803.1| transcriptional regulator (Cti6), putative [Neosartorya fischeri
           NRRL 181]
 gi|119407957|gb|EAW17906.1| transcriptional regulator (Cti6), putative [Neosartorya fischeri
           NRRL 181]
          Length = 628

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 38/157 (24%), Gaps = 3/157 (1%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +          S       +                + +    I+++    +     
Sbjct: 225 DSSRDNSRRAKDSKSRQSESIANPKRRSTMNSRDAAYDEEEQLRRAIEESKEDTQPPAED 284

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
              RR +R R  +  H         SS         +         + +  +   +G   
Sbjct: 285 IALRRGKRSRSDSEAHKQVTKRQRTSSPSPSAISKPENTESQPASEDESKTKVNGNGTKN 344

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV---KKTRWWKRR 722
           +          P  E+    +DP     +K   ++RR
Sbjct: 345 SRVAPRGHREKPIKETEEPETDPAEIASRKKGKFERR 381


>gi|114661640|ref|XP_001163977.1| PREDICTED: retinoblastoma-binding protein 6 isoform 5 [Pan
           troglodytes]
          Length = 1624

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +       K  +         +   V + E    I K       + +   E S      
Sbjct: 834 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 890

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 891 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 950

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                     + +  N  + P+  K    KR+
Sbjct: 951 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 982


>gi|8163703|gb|AAF73811.1|AF154039_1 surface protein PspC [Streptococcus pneumoniae]
          Length = 684

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 58/232 (25%), Gaps = 16/232 (6%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            ++      L +         +       V +       L   K     + E    +   
Sbjct: 221 KVKEAELELLKVKAKESRDEKKIKHAEAEVESKQAEATRLKKIK-TDRKKAEEEAKLKEA 279

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           V             E+G P + +        +       D         E  LP P  + 
Sbjct: 280 VEKNAA------TSEQGKPKRRVKRGALGEQATPDKKENDAKSSDSSVGEETLPSPSLKP 333

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            + + +            K ++   RR   T+ +    +    S   V +   ++  E +
Sbjct: 334 EKKVAEAQKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEA 393

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             + +           E+       +   + +          KKT    +RK
Sbjct: 394 KESRNEEKIKQVKAKVESKQAEATRLEKIKTD---------RKKTEEEAKRK 436


>gi|158854005|ref|NP_038858.2| serine/threonine-protein kinase PRP4 homolog [Mus musculus]
 gi|26350865|dbj|BAC39069.1| unnamed protein product [Mus musculus]
 gi|148708949|gb|EDL40895.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast), isoform CRA_b
           [Mus musculus]
 gi|187954769|gb|AAI41274.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Mus musculus]
 gi|187954931|gb|AAI41273.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Mus musculus]
          Length = 1007

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 33/149 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q  V        +         I+   +   +    +  S +      + ++S    
Sbjct: 247 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ +R                +     + S       S        +        
Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 366

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +     S      S + S     K+R
Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395


>gi|23831386|sp|Q61136|PRP4B_MOUSE RecName: Full=Serine/threonine-protein kinase PRP4 homolog;
           AltName: Full=PRP4 pre-mRNA-processing factor 4 homolog;
           AltName: Full=Pre-mRNA protein kinase
 gi|20330556|gb|AAM19102.1|AF283466_1 PRP4 kinase [Mus musculus]
          Length = 1007

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 33/149 (22%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              Q  V        +         I+   +   +    +  S +      + ++S    
Sbjct: 247 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            + + R+ +R                +     + S       S        +        
Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 366

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
              +     S      S + S     K+R
Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395


>gi|17554518|ref|NP_498982.1| hypothetical protein R08D7.1 [Caenorhabditis elegans]
 gi|267547|sp|P30640|BUD13_CAEEL RecName: Full=BUD13 homolog
 gi|3878934|emb|CAA78047.1| C. elegans protein R08D7.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 458

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 44/183 (24%), Gaps = 9/183 (4%)

Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592
           +++R  I   +     +  V          F  +  + V A      +  S   +P   K
Sbjct: 58  DEEREEIEVLKQSVKKAKVVHG--------FK-QTFAEVDAPKVIKPEPLSPDNSPPRGK 108

Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                  +    P  K    ++                   RRRR               
Sbjct: 109 RQRHDSDNSPPRPSRKRNDSDNSPPRPSRNRHDSDKDNSPPRRRRHDSDNSPPRPSRKIR 168

Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
             S       S          ++++   N +   ++N      P S       +  S P 
Sbjct: 169 EESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPR 228

Query: 713 VKK 715
             +
Sbjct: 229 KSR 231


>gi|198438531|ref|XP_002131826.1| PREDICTED: similar to R3H and coiled-coil domain-containing protein
           1 [Ciona intestinalis]
          Length = 1535

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 48/174 (27%), Gaps = 6/174 (3%)

Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615
                     E      + +    K  +  Q  S     + +          KS+S +  
Sbjct: 466 PASTSSHHSKEGKMQRSSTMPRSTKEPAKKQRSSSKGRSQTLKGPPVSTGRSKSQSTKKH 525

Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM------YME 669
                 ++     ++    ++R++P +        S V+S  +++D S           E
Sbjct: 526 PAPPPPQKEEEKPKRSSSSKQRKKPTSLDEPKKHSSVVTSTDDLLDASNSTLYHPLPDQE 585

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
               +     +      ++    + PP     +           + +    RRK
Sbjct: 586 QPSTSKKKSTKEKQKKHSQQSSPATPPSDPNAISPVTCDGTAQTEVSGTLSRRK 639


>gi|188995494|ref|YP_001929746.1| transcription termination factor Rho [Porphyromonas gingivalis ATCC
           33277]
 gi|188595174|dbj|BAG34149.1| transcription termination factor Rho [Porphyromonas gingivalis ATCC
           33277]
          Length = 658

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 9/170 (5%)

Query: 532 LNQKRA-TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           LN+K    +       G     +       K   I K    QA+   G +          
Sbjct: 9   LNEKAEAELAAIAGELG-----IANAGSMPKQELIYKILDEQAISVAGVRKEKQKTTEDR 63

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
                   +          ES +         +     +++R R R+   A +       
Sbjct: 64  HTERRKPGRPRKNAEEEAPESKDVAAAPAEPNDEEAQAKRKRGRPRK---AAEEIAEETR 120

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
            DV  +  +         E          +       +    ++P  +  
Sbjct: 121 EDVQQLVALAAAEETNATEKESAGRKPAAKTSTASPAKAPAKALPRPAET 170


>gi|123425367|ref|XP_001306802.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121888396|gb|EAX93872.1| hypothetical protein TVAG_439750 [Trichomonas vaginalis G3]
          Length = 1448

 Score = 38.0 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 43/187 (22%), Gaps = 11/187 (5%)

Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593
           +++      E +    I +      +D+          +  V T   V     +      
Sbjct: 276 EQKNNTNNSEDKIDEQIKISEKNNNSDQN-----SKKSEEKVETSGPVLIPIVSRDIVPT 330

Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653
           I         +     E+ E   + +  EE          +          ++  +    
Sbjct: 331 ISEKNNKSDQISNEMIENSEPKNNTVKQEEEGNDKTTISGKNNNSEQNPKQNEEKIELSE 390

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS------IPPVSTPEMESSNS 707
                 I    +     +    +N  +  +    E  D S      I           N+
Sbjct: 391 PKNNKSIKQEEENSDLKTKSDKNNNSDQNSRQNEEKADTSKLVLIPISSSDKTPNSEKNN 450

Query: 708 SSDPIVK 714
            +    K
Sbjct: 451 QNSTETK 457


>gi|284048775|ref|YP_003399114.1| hypothetical protein Acfer_1440 [Acidaminococcus fermentans DSM
           20731]
 gi|283952996|gb|ADB47799.1| hypothetical protein Acfer_1440 [Acidaminococcus fermentans DSM
           20731]
          Length = 1056

 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 34/101 (33%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
            ++   +  G   QA S  K  E   ++      PK +     +     EE+     ++ 
Sbjct: 159 EVMEMPYPEGKQHQAESLLKKKEKEAREAQNTKEPKEDKESGGEPEESREEAPAEQPRKA 218

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
           R  R R     + +     + +      +++    ++ ++ 
Sbjct: 219 RNGRNRDKGARNRNGRGKKNAAPEPAPEEEAQPEALKEAET 259


>gi|86141212|ref|ZP_01059758.1| transcription termination factor Rho [Leeuwenhoekiella blandensis
           MED217]
 gi|85831771|gb|EAQ50226.1| transcription termination factor Rho [Leeuwenhoekiella blandensis
           MED217]
          Length = 582

 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 39/134 (29%), Gaps = 2/134 (1%)

Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585
           ++   L   K  ++ + +  + V  +     +   ++                 K    +
Sbjct: 17  EIAKGLDIPKYRSLKKLDLVYKVLDHQAADPKAVAEVIEETSSETPTKSKAPQKKTQKSA 76

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
              +         +D +     K  S ++        E      +R+ R+   + ++D+ 
Sbjct: 77  PKKNTRSASNDEKKDSSKDTPQKESSQKNEAKTSGKTEEKTEKPQRKPRQ--TKASSDND 134

Query: 646 DAGVVSDVSSIQNV 659
           +     +  S  N 
Sbjct: 135 NTKQSDNNRSKNNR 148


>gi|325116528|emb|CBZ52082.1| putative protamine P1 protein [Neospora caninum Liverpool]
          Length = 2108

 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 6/137 (4%)

Query: 593  NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652
                    +        E  +   D     E  G   + R++R  R+             
Sbjct: 1627 ESRRQAGADVNAEEDGEEDGDGEADGEEDREVDGAEERERKKRDERKGPETDEKERKRGR 1686

Query: 653  VSSIQNVIDDSFDMY---MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                    + S         P D +       G+   +     +   +   + E     +
Sbjct: 1687 SGRCATRRNRSGSASWTTASPPDASPRRSPSAGSAKRSRRLKSASTSLRPGKEEKGGKEA 1746

Query: 710  DPIVKKT---RWWKRRK 723
                ++T       RR+
Sbjct: 1747 SQEERETEARGVRTRRQ 1763


>gi|313220729|emb|CBY31571.1| unnamed protein product [Oikopleura dioica]
          Length = 2395

 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/128 (7%), Positives = 26/128 (20%), Gaps = 6/128 (4%)

Query: 578 GHKVGSDSQAPSYDKNIECVWQDE----ALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                S +  P  +     +  DE       P    E    +     +E+     + +  
Sbjct: 6   DAIADSPTPPPPQENEDNEMEVDENGLKTEKPEEAQEPTPRVNGANEAEKENSEEQAKEA 65

Query: 634 RRRRRRPATDHHDAGV--VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             +    A +  ++    +                  + +                +  D
Sbjct: 66  EVKASDEAKEPEESSSQELEKPDLPTTKAKRRPSEGTKATATPPTKRPRRSVPPKKKKAD 125

Query: 692 VSIPPVST 699
                  T
Sbjct: 126 EEAEKTDT 133


>gi|312217426|emb|CBX97374.1| hypothetical protein [Leptosphaeria maculans]
          Length = 764

 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 48/170 (28%), Gaps = 10/170 (5%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD--------EALLPIPKSE 610
             + + ++  S  + +         + +    ++      +                K  
Sbjct: 87  EQEDYNMDSSSSEEDVEGADEDDAGEKELRKAERQERNKKRKATTNPFAARVAAATRKKV 146

Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
            L+    +     S+    + +++  R        D  V +          ++    ++ 
Sbjct: 147 KLDVPGASDAQSRSSFGRPRPKKKSERASWIPTVEDGPVRTSSRKQTVANKETTMAKLKE 206

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT--RW 718
            D    + L               PP++  E  +  + ++ I KKT  RW
Sbjct: 207 KDRRRDDTLAMMKAAEARKAKAKEPPLTQAERLAEAARNERINKKTLHRW 256


>gi|198432875|ref|XP_002131319.1| PREDICTED: hypothetical protein [Ciona intestinalis]
          Length = 617

 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 48/177 (27%), Gaps = 5/177 (2%)

Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
           G S++V I   L      I+    +   V    +  +  +  +  K      +       
Sbjct: 112 GKSVDVGISFPLTKTSMEIDARKKLANPVIEKFENENSIELGAMRKKSSKQRESSPCSND 171

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-----HHDAGVVSDVSSIQNVID 661
               S         S +S+  +R+++ + ++ +           +   VS    + N  +
Sbjct: 172 ESKSSKGKSNPEGASGKSSRSLRRKKLKEQKNKEEPQAAASISREETPVSKTKKLMNKEN 231

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
              +        T      +      +  +           + +    D   KK + 
Sbjct: 232 KRVEQNQTRQKKTTSTKTTDKPEDIEQQKEAKKLLTDEVVAKIAEEFDDKPEKKQKT 288


>gi|169777047|ref|XP_001822989.1| transcription factor TFIIIB component [Aspergillus oryzae RIB40]
 gi|83771726|dbj|BAE61856.1| unnamed protein product [Aspergillus oryzae]
          Length = 572

 Score = 38.0 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 33/147 (22%), Gaps = 4/147 (2%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
           +           P     +      E   P+ + +  E + +   S  +      R  +R
Sbjct: 124 SQPPNATPAEPTPLLSIEVAPDESGEDRAPVEEPQLSETLVNEEPSLVAETPAEARPSKR 183

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           ++                   Q     +           + +  E+              
Sbjct: 184 QKTNAEPATPALESQRLTGPPQLATPPATQTSTNEETTESRDTTESQPPAEQNRKTT--- 240

Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRR 722
             S     S + +      +TR  K R
Sbjct: 241 -KSRKRKPSKDVNGGDTTTRTRERKPR 266


>gi|289597701|gb|ADD12286.1| TashAT2 [Theileria annulata]
          Length = 279

 Score = 38.0 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/144 (8%), Positives = 36/144 (25%), Gaps = 2/144 (1%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                    T  +   D +  +  + +E +          + E  +        +E   +
Sbjct: 124 IQTGSIDTQTDIQEVEDIETQTDIQEVEDIGVQTIGNFSDQPEQPKRKPGRPRKQEQPEL 183

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +++R R R+ +P  +             Q    +                  + +   T
Sbjct: 184 PKRKRGRPRKHKPEPEQPKRKRGRP--RKQKPQAEQPKRRPGRPRKHKTEPESDHSEEST 241

Query: 688 ENYDVSIPPVSTPEMESSNSSSDP 711
           + +        + +    +    P
Sbjct: 242 QPHPQEQETEDSIKALGPSPEKRP 265


>gi|226322553|ref|ZP_03798071.1| hypothetical protein COPCOM_00325 [Coprococcus comes ATCC 27758]
 gi|225209047|gb|EEG91401.1| hypothetical protein COPCOM_00325 [Coprococcus comes ATCC 27758]
          Length = 725

 Score = 38.0 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 63/234 (26%), Gaps = 10/234 (4%)

Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539
           T + C  C   G +       ++     +E L +Y      V   ++   +  N+K   +
Sbjct: 469 TGEPCPVC---GSVHHPCPAQMTEGAPEKEELEKYRKETADVEKKTNDASFKANEKLVQL 525

Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599
              E     S+       + ++   IEK   +        +          +   E V +
Sbjct: 526 KALEEEIQKSVK-SFDSSIQEEE--IEKSLALIGQQMDALEKSEKELEKKLEVAKEAVAE 582

Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659
            + L    ++E  E  Q     +E     R +     R +   +     V   +   +  
Sbjct: 583 KQKL----EAEIPELEQMQKKLQEEEQERRDQLLVSERDKANAEEQAVKVRGKLEFPEKA 638

Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             +     ++         L      F +         +  +      + +   
Sbjct: 639 EAEQKIKELDKQKKEIDKDLNVAQKAFQDCSQSVEAAKTKKKTLEKQIAGNKET 692


>gi|126332161|ref|XP_001367572.1| PREDICTED: similar to KIAA0155 [Monodelphis domestica]
          Length = 1168

 Score = 38.0 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 5/144 (3%)

Query: 569  SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN----IVSEES 624
                 + + GH   S+S +   D   + V  +      P     E           SEE 
Sbjct: 1024 EDKLKIADEGHARNSNSDSDDGDLRKKRVMSESDSDENPNQSGSEAGSPRRSSMQQSEED 1083

Query: 625  TGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYMEPSDITNHNLLENGA 683
            +   R   +RRR     +D+         S+   N    +        +    +  E  A
Sbjct: 1084 SDSDRSAPKRRRSVSEQSDNESVQSGRSHSAGSDNESRPASPSADSDRESERASDNEASA 1143

Query: 684  HGFTENYDVSIPPVSTPEMESSNS 707
             G   + +         E  S +S
Sbjct: 1144 RGSGNDSEPEASNNEASERGSDDS 1167


>gi|313227384|emb|CBY22531.1| unnamed protein product [Oikopleura dioica]
          Length = 1556

 Score = 38.0 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 54/246 (21%), Gaps = 17/246 (6%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN-- 551
           R  S   L +L    E   +                    +K   +   +          
Sbjct: 82  RRVSECPLQMLAQAAEDAGRAETAKKRKEDEKRAADTSKKEKELELQRVKQLQEKKKQDA 141

Query: 552 VVIGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           +    E     F  +K                     +    ++     +  +   +++ 
Sbjct: 142 IKAEQE-RQAEFRRQKMEEARLLDEARKLDNEKKEVRRREEAAKLALEAEAKQKALREKQ 200

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           +    +  +++D +     +      RKR+ R R +  A           +         
Sbjct: 201 IAEEKRQRAIKDAERKAAEKRKLEEERKRQHRERAQLQALLEQKRQQARKLEEKLQKERA 260

Query: 663 SFDMYMEPSDITNHNLLENGAHGFT-----ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           +     E  +          A         E    S       +     +      KK  
Sbjct: 261 AKRKLAEEKEAKAKKEALERAKRDALRQIEEEEKKSAERQKQKKARERAAKDLEADKKRE 320

Query: 718 WWKRRK 723
             K R+
Sbjct: 321 AAKERE 326


>gi|310792266|gb|EFQ27793.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001]
          Length = 866

 Score = 38.0 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 82/296 (27%), Gaps = 25/296 (8%)

Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454
               AL  ++     + R L +  + G +V     M   +N   V   +  +   D+  +
Sbjct: 326 QPGNALGLHVTQVRILLRALAMLKVGGRVVYSTCSMNPVENESVVAAAIDRAGGPDKVEI 385

Query: 455 QVGAISNF-GLL--------EMSRQ----RIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501
            V   S   GL+        ++  +        + ++  TK  T     G I       +
Sbjct: 386 -VDCSSELQGLVRAPGMRKWQIMDKSGRLWSSQAEVDEYTKSSTDGIAPGRIVDTMFPPV 444

Query: 502 S--------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
                    + R +  Y  Q       +          +  +   + +     G +    
Sbjct: 445 EGSVCADLPLERCMRVYAHQQDTGGFFITVLQKKAEVKIRPEDQKVDDAAKSNGATAAAT 504

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              E   +    E+ +  +          +    P      +    +  +     +  ++
Sbjct: 505 PAAENDTEK-KSEEQTEEKTEAAPAATDEAAEAKPEEKIEEKATTAEAEVAEQDATNGVK 563

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
             +++  ++  T     ++ +    +      +  +   V      ++ + ++   
Sbjct: 564 RAREDETADGETQET--KKPKLEASQEKPKRSNRNIHGQVEEPFKYLNPAHEVIKN 617


>gi|167999845|ref|XP_001752627.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696158|gb|EDQ82498.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 982

 Score = 38.0 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 5/167 (2%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQD 617
            + +              ++ S   A       E    D  L    + E      E  Q+
Sbjct: 809 EYRMNSTQSHHIAAQKEKQLESMRDALGLKNVKEGEASDRELQEQKRQERIMAREEKEQE 868

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
           N   + +     +R+++  RR     H +                      E       +
Sbjct: 869 NREKQAAIEEEERRQKKELRREEKLRHREQQEEERKQRKLERKVRREQDEQERYQKGKES 928

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMES-SNSSSDPIVKKTRWWKRRK 723
                     E  D         + ES     ++      R    R+
Sbjct: 929 RELMEPRESKEKRDQEYEERDHKKKESRERRKNEDEEPHERIKDPRE 975


>gi|309366565|emb|CAP21226.2| hypothetical protein CBG_24674 [Caenorhabditis briggsae AF16]
          Length = 1470

 Score = 38.0 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 4/109 (3%)

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            ++D+ +  E      +RRR  R  + +                 V + +     +PS+  
Sbjct: 1000 VEDDFIEMEDDSSDEERRRYTRETKESRRSSKQATKRRTP----VRESAKRHSPKPSERA 1055

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +                  PP S P M           ++    + R+
Sbjct: 1056 GNVRKSKSTEDRRRRSTEDTPPPSAPPMSEERRKMLKRQERMHKAEERR 1104


>gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum]
          Length = 1796

 Score = 38.0 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 2/133 (1%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           I +            +    +  P   +  +       +   PK     +      S+E+
Sbjct: 238 ISEVQGSHKPDKADEQDAEQNNTPQQKRRRKKHRPKVVIEGQPKRTPKPEKNQQHSSKET 297

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
           TG   KR+  RR +        +  V  ++  Q+ +  S ++          N +   A 
Sbjct: 298 TGE--KRKYIRRNKVEEPPGTPSDKVDGMTCPQSQLPSSREIQRAKRRYVRRNKVNKPAP 355

Query: 685 GFTENYDVSIPPV 697
              E+  +  P +
Sbjct: 356 NPAEDETIDPPNI 368


>gi|119196889|ref|XP_001249048.1| hypothetical protein CIMG_02819 [Coccidioides immitis RS]
          Length = 646

 Score = 38.0 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                  +  Q       I     +E    +P+    E+    +          +R    
Sbjct: 378 AEAEAELAQRQKRRTSGRIPEASGEEKPGQLPEQFRGEERPGAVPGRREPAREAERTEES 437

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           +R R      +AG+V+ V        D  ++  +    T    +E       +     + 
Sbjct: 438 KRFREG--DKEAGLVAGVGQPPRKESDREEIPEQFRAETPGQPVEERPQAPVQERVAGMA 495

Query: 696 P--VSTPEMESSNSSSDPIVKKTRWWKRR 722
           P      E        +   K++RW +RR
Sbjct: 496 PGAEEPVEAVPPPHEGEEAHKQSRWARRR 524


>gi|321248433|ref|XP_003191126.1| RNA binding protein [Cryptococcus gattii WM276]
 gi|317457593|gb|ADV19339.1| RNA binding protein, putative [Cryptococcus gattii WM276]
          Length = 364

 Score = 38.0 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 36/135 (26%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +E G   +             +     ++ +   +  A           + Q    ++E+
Sbjct: 107 VEYGKSDEEAAADREARIEKRKETRKARDAKKKAETAAAGATEGEAQAAEGQQEGEAKET 166

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               +K R R+ +RR   +  D     + S+ +  ID       + +             
Sbjct: 167 APKAKKSRARKPKRRQPGEGDDEAHEGEESASKARIDAEGSDEADEASQEKKAAKPRQPR 226

Query: 685 GFTENYDVSIPPVST 699
              E         S 
Sbjct: 227 KPREKKLQISEEDSE 241


>gi|2896142|gb|AAC03120.1| Tpr1 [Schizosaccharomyces pombe]
          Length = 1039

 Score = 38.0 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 3/221 (1%)

Query: 498  SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
            + A+  L +  E   +  +     ++ + +       K  T  + E      I     + 
Sbjct: 809  NFAMQQLDASIETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSVA 868

Query: 558  LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP---IPKSESLED 614
               +   I++       +     +  + Q        E     E +L      +  S +D
Sbjct: 869  AKLEDARIQREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDD 928

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            +  +   E+ +G  +K+ R++R+ +   +  D+GV  D     +   +          + 
Sbjct: 929  MSLSDDEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTKKRRVNRRVI 988

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +     +       N +  +      + ++  + +    K+
Sbjct: 989  SEEYTFDQDSDAEGNQEEEVSRTIEEKQDNDITDNQDDNKE 1029


>gi|67540810|ref|XP_664179.1| hypothetical protein AN6575.2 [Aspergillus nidulans FGSC A4]
 gi|40738725|gb|EAA57915.1| hypothetical protein AN6575.2 [Aspergillus nidulans FGSC A4]
 gi|259480148|tpe|CBF71015.1| TPA: putative Myb-like transcription factor (Eurofung) [Aspergillus
           nidulans FGSC A4]
          Length = 573

 Score = 38.0 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 12/156 (7%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV-- 627
           P              +Q P+ ++  E   + E      +SES    +    S  ++    
Sbjct: 204 PQPEEELAQLATPPSTQIPALEERTESRDESEVPGLARRSESAPKKKGRRASRSTSNDAG 263

Query: 628 --IRKRRRRRRRRRPATDHHDAGVVSD--------VSSIQNVIDDSFDMYMEPSDITNHN 677
              ++R+RR R R P  D  +   ++             +       +  +   ++    
Sbjct: 264 KIKKERKRRTRNREPTPDGAELIEIAPAVVKMSDLCKDTRTGKRSKRETELRAHELAEAE 323

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             ++   G  ++   +   ++   ++   + S P  
Sbjct: 324 RKKSQQEGGQKDETAAKQTLNESVLKEDQTGSTPNK 359


>gi|332016542|gb|EGI57423.1| Titin [Acromyrmex echinatior]
          Length = 17174

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 78/677 (11%), Positives = 192/677 (28%), Gaps = 59/677 (8%)

Query: 82   PFSDRQAL----LKESNIAQTDSEAVADDVTHGDV-------TIPNDHSLEEVAPIANFS 130
            P  D + +    + +      + +  A+ V   D+        I +D  L+  A      
Sbjct: 5237 PKPDLEKINLKPVIKEKENTREIDKTAEYVEQEDITLLQVSTEIYDDIKLKPDARKKLVR 5296

Query: 131  QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190
            +E   +  I++  +             E    K  ++       K +    ++     + 
Sbjct: 5297 EEKHIDEDITSYKEKEDTTLLKVTSKHETNIHKKIKKQEDMPQEKPQSTTWMEEKIILKR 5356

Query: 191  NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT-NPVDRKNLKEIARGLEVPAGMGVIL 249
             K                L P +   + I +K +   VD K++K  +  L        I 
Sbjct: 5357 TK-PEQKEIYKETLEEVSLKPTSRLYKVILKKESVEKVDLKHIKIESTDLTGIVQQENIP 5415

Query: 250  RTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISE 309
                  +  IE+ +D E   ++    +     +        + +     I+    +++  
Sbjct: 5416 YHEEEDKIIIEMDKDVESTKKVSSEKKSKIPYTEKEDTTILDIDTTDNIIKKSKKEEVKM 5475

Query: 310  IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369
              V G+K   + +             V+  ED       +    +  SL Q +++     
Sbjct: 5476 PWVRGKKARDKKEVEEIRTSQIIKPEVKLEEDKPTEISEAPWRRKSKSLIQKKISETETD 5535

Query: 370  YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429
               ++  E        S  + ++     T      +A  E        D   +++     
Sbjct: 5536 KTKVDIKEI-------SEATWQKSEKSKTTKSITQKAQIE--------DFTSVVLKPAKR 5580

Query: 430  MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL------LEMSRQRIRSSVLESTTKV 483
             E+ +  +  E  L    +  + +     +++  +      LE+S ++I     +  TK 
Sbjct: 5581 HEKLEEQKIQEITLHPVKQLPKEKEVSEDLTHTPMTKETSKLEVSSEKIDEMNRDIFTKK 5640

Query: 484  CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543
                     +  + +  L+ +    E L       II    +     +L   R    E E
Sbjct: 5641 ID-------VPWRRAKKLTQIEQKPEDLQLKPIKKIIKPEEAQPEEVILKHVRKLPKEEE 5693

Query: 544  ARFGVSINVVIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            ++  +++  +   ++    +   ++    +        +         + K+ E      
Sbjct: 5694 SKDEITLKSMQKEKVEEKPEQIRLKPVKKMDKPEEPTPEQIVLKPVRKFPKDEESKEITL 5753

Query: 602  ALLPIPKSESLEDIQDNIVSEESTGVIRKRRR----RRRRRRPATDHHDAGVV------- 650
              +   K E   +       ++       +      +  R+ P  +     +        
Sbjct: 5754 KPVQKEKVEEKPEQIQLKPVKKIEKPEEPKPEQIVLKPVRKLPKEEETKEEITLKPVEKE 5813

Query: 651  -----SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
                  +    + V         +P  I    + +      T+      P       E  
Sbjct: 5814 KVEEKPEKIRFKPVKKIEKPEEPKPEQIVLKPVRKLSKEEETKEGITLKPVEQKKVEEKP 5873

Query: 706  NSSSDPIVKKTRWWKRR 722
                   + +T W ++R
Sbjct: 5874 EEIQLKPIIETPWRRKR 5890


>gi|326332904|ref|ZP_08199161.1| transcription termination factor Rho [Nocardioidaceae bacterium
           Broad-1]
 gi|325949262|gb|EGD41345.1| transcription termination factor Rho [Nocardioidaceae bacterium
           Broad-1]
          Length = 602

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 31/147 (21%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            ++K   + A+          + AP+         +         +++ E   +      
Sbjct: 44  SMKKAQLIDAIKAAQSSRAQSAPAPAEKAEKPAAEKTADKPAEKPADTAEKPAEKSAEAA 103

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             G    +R RR+R +  +     G  S                              G 
Sbjct: 104 DAGNEGAQRPRRQRNQNKSAGQAQGGQSGQGGQSGQGGQGGQSGQGGQGGQGGQPAAGGQ 163

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSD 710
           +                +      S  
Sbjct: 164 NKGPAKAGQPAAEKKNEDAPKERPSES 190


>gi|282910100|ref|ZP_06317908.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282326166|gb|EFB56471.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp.
           aureus WW2703/97]
          Length = 528

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 44/176 (25%), Gaps = 8/176 (4%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     ++      E  +  + L +       D+  P  + N +   +D  
Sbjct: 306 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDGN 360

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                 ++       N   +E      K    +  +                   N    
Sbjct: 361 KPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGK 420

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                    D    N +     G T N        +  ++ + N  +D  + K   
Sbjct: 421 EDGNKPGKED---GNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 473


>gi|156550023|ref|XP_001604707.1| PREDICTED: similar to GA10060-PA [Nasonia vitripennis]
          Length = 542

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 46/179 (25%), Gaps = 10/179 (5%)

Query: 537 ATIVEYEARFG---VSINVVIGIELADKLF--YIEKGSPVQALVNTGHKVGSDSQAPSYD 591
             I + E       ++IN     E+   L    + + +      N       +   P   
Sbjct: 99  NHIRDIERLLKGAHITINARSDEEVEVDLIMDKLSRATASTYKFNEPRGENGERTGPVGT 158

Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR----RRRRPATDHHDA 647
                V   E           ++  +     E     +++ RR+     R+R   +    
Sbjct: 159 TYRRVVPAQEINASERDQFWQKEEIEEKQRLEQERARQEQNRRKLEEEVRKREEAESKVR 218

Query: 648 GVVSDVSSIQNVIDDSFDMYMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
                            +   E   ++ N N+  N  +  +++   S       +    
Sbjct: 219 EQKITTREDITTRQRQAEQRAEEIKNLRNQNIAANDRNSDSDDEPKSRSDELRRQRSKE 277


>gi|51593355|gb|AAH80598.1| PHF20 protein [Homo sapiens]
          Length = 550

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|24584968|ref|NP_609877.2| nucampholin [Drosophila melanogaster]
 gi|74869383|sp|Q9VJ87|CWC22_DROME RecName: Full=Pre-mRNA-splicing factor CWC22 homolog; AltName:
            Full=Nucampholin
 gi|22946749|gb|AAF53667.3| nucampholin [Drosophila melanogaster]
 gi|261260015|gb|ACX54942.1| LD29051p [Drosophila melanogaster]
          Length = 1330

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 44/166 (26%), Gaps = 8/166 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            ++            +  S  +  +   +     +        +  + E   D      + 
Sbjct: 1132 QRRRDNSTGRERNRENSSYDRERNRGNSSYDRERKRGNSSYDRERNRESSYDKERKNRNA 1191

Query: 626  GVIRKRRRRRRRR-------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
                ++R+R R R       R  +   +  + S  S   +   D              + 
Sbjct: 1192 VAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGERSDR 1251

Query: 679  LENGAHG-FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             E    G  ++  + S     +   E S+   +    K R   R +
Sbjct: 1252 GERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERERDRDR 1297


>gi|317420085|emb|CBN82121.1| Serine/threonine-protein kinase PRP4 homolog [Dicentrarchus labrax]
          Length = 1018

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 42/173 (24%), Gaps = 16/173 (9%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +   ++G  +    +     +         +     +S+S + +     S++   
Sbjct: 191 RNGEQRQRGSSGKPISPRGRKSGKSRRDSTEGSKSSTKRRSRSKSADKLGQAKESKQDKV 250

Query: 627 VIRKR------RRRRRRRRPATDHHDAGVVSDVSSI----------QNVIDDSFDMYMEP 670
               +      R R R R       D+   S   +           +     +      P
Sbjct: 251 TKTTKDTGVKDRGRGRSRSKDRKRSDSADRSKERTRKSNSPSSWRGEQKGSRTDKRSTPP 310

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            D   +    +           S       +  + + S D    K      R+
Sbjct: 311 RDDRPNQERASRRSRSPGRERPSRSDADRDKRPAKSPSKDASSGKENRSPHRR 363


>gi|121698847|ref|XP_001267826.1| DNA ligase Cdc9, putative [Aspergillus clavatus NRRL 1]
 gi|119395968|gb|EAW06400.1| DNA ligase Cdc9, putative [Aspergillus clavatus NRRL 1]
          Length = 879

 Score = 38.0 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 46/181 (25%), Gaps = 20/181 (11%)

Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
           F  +K     A         S S + +  +    V      +P   + +  +   +  S 
Sbjct: 35  FSSKKDKKSDAAAEEPSSEQSPSVSTAVAELKNGVDVKMEDIPKEAAVAQPNGSPSAKSL 94

Query: 623 ESTGVI---------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
           +                ++RRR+  R A         S                  P+ I
Sbjct: 95  KREKSSDEDSDSDIQPAQKRRRKSSRGAEAAPTVRKKSPSPKSPKKRGGKAKEASPPAVI 154

Query: 674 TNHNLLEN-----GAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIVKKTRW-----WKRR 722
              +  E            E   VS      PE+   +       +K T       WK R
Sbjct: 155 RKSSGEETPEKESELSDEEELELVSDEEEDKPEVMTKTMEKVQATLKATGTEPYPDWKPR 214

Query: 723 K 723
           +
Sbjct: 215 Q 215


>gi|163853261|ref|YP_001641304.1| RNA-binding S4 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664866|gb|ABY32233.1| RNA-binding S4 domain protein [Methylobacterium extorquens PA1]
          Length = 669

 Score = 38.0 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 27/172 (15%), Gaps = 14/172 (8%)

Query: 565 IEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           +E+  P  +      H+              +   +D      P  +   + +       
Sbjct: 392 VERLQPSPEKPAPEPHRRVRFRNEEERSAPRDRAREDRPRQDRPGQDRPREDRPRSEGPR 451

Query: 624 STGVIRKRR-------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
                 +R               R RRR                   +          E 
Sbjct: 452 ENRARDERPGRDEFRRGAPAGDARPRRREAGEAAPAERRGPPRERPSDFEGRPPRERSEG 511

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               + +             +                       +      R
Sbjct: 512 RPQRDFHGDSRERGEGAPRRERPSEGRPPERRGPPRDRPRAAEGERPARPPR 563


>gi|77360046|ref|YP_339621.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874957|emb|CAI86178.1| Electron transport complex protein rnfC [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 846

 Score = 38.0 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 52/235 (22%)

Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526
            ++ +    + E     C  C    Y+       +   R  +  + +  A  I      +
Sbjct: 399 FAKSKEYDKLQEHNLFDCIECGACAYVCPSEIPLVQYYRVAKVEIKEQQAEKIKADRAKE 458

Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586
                  +      E + R      V    E       + +     A  +    V +   
Sbjct: 459 RFDARKERLDREQAERQNRHKRKPAVKTPDEKQKVADALARVKSKSANSDEKSAVAAAIA 518

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
                K      + +      +    ++       +++          ++    A     
Sbjct: 519 RAKAKKQQGDALEPDNSEVAKERALRKEQARQYKEQKAQSDEPASPDDKKSAVAAAIARA 578

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
               +   +      D       P D     +    A    +         ST +
Sbjct: 579 KAKKAAQLANAESTTDDAPQNEAPVDDKKAAVAAAIARAKAKKAAQLADAESTTD 633


>gi|324502334|gb|ADY41027.1| RNA polymerase-associated protein CTR9 [Ascaris suum]
          Length = 1143

 Score = 38.0 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 30/134 (22%), Gaps = 10/134 (7%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              Q       +  + S   S +   +              ES E  +        T    
Sbjct: 1007 TKQKSKVKSREFVASSDDSSDEGANKPSTTAHRSSGSEGGESPEPARITGS---DTSEEG 1063

Query: 630  KRRRRRRRRRPATD------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             RR RR      +D       H     +   S ++    S D              +   
Sbjct: 1064 DRRARRSSSEQESDGERDVSRHRKTSDNSSESAEDRALPSSDSDDAAEASPPSKPKKKRV 1123

Query: 684  HGFT-ENYDVSIPP 696
                 E  D   PP
Sbjct: 1124 VSSGDEESDARTPP 1137


>gi|281202975|gb|EFA77176.1| GRAM domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1082

 Score = 38.0 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 50/223 (22%), Gaps = 13/223 (5%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
            + S       +  +                      +  +   ++ E E +    + + 
Sbjct: 730 LTSSESFNKNQKEKDGSAHHQHKDKEKTKKSRKSNSNVAEELTKSVEEIEVQAAKRVEI- 788

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                       +       +        + +   +    +      E L+    +ES  
Sbjct: 789 -------PKIAFDNLHDSVIVEPD-LPEVTITTTTTTTTAVTNSQTPEQLVDSNPNESAT 840

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD--VSSIQNVIDDSFDMYMEPS 671
                    E          R+RR   +T +   G  +    S  + +      +   P 
Sbjct: 841 PTSVRSPPNEDDSSNELGETRQRRH--STSNSSPGKHNPLVDSFKETMSPRVDLIPTSPK 898

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
              +             N  V    V++P+ E          +
Sbjct: 899 QQLDGGSNNTDTEKLEANNSVPSYLVTSPKAEKDREQLKEQRR 941


>gi|194746402|ref|XP_001955669.1| GF18880 [Drosophila ananassae]
 gi|190628706|gb|EDV44230.1| GF18880 [Drosophila ananassae]
          Length = 946

 Score = 38.0 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 28/127 (22%), Gaps = 3/127 (2%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
               +  S       D       ++E+              D+          +KR   +
Sbjct: 614 PPPRRQESPPVRKPQDSQSRKHQEEESFGKKRPDSPTRKRLDSSGRRPQESPNKKREESQ 673

Query: 636 RRRRPAT---DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
            R+R  +      DA       S      DS     + S         +     + +   
Sbjct: 674 ARKRTDSLNKRSQDAPSKKRQDSPNRKQQDSVAGRRQGSPDKKRRDSPDRKRKDSPDRKR 733

Query: 693 SIPPVST 699
              P   
Sbjct: 734 KDSPDRK 740


>gi|157116780|ref|XP_001658632.1| hypothetical protein AaeL_AAEL007747 [Aedes aegypti]
 gi|108876313|gb|EAT40538.1| hypothetical protein AaeL_AAEL007747 [Aedes aegypti]
          Length = 478

 Score = 38.0 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 35/152 (23%), Gaps = 1/152 (0%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
               +    +       +      +   +  +    D   P   +  E            
Sbjct: 323 KKAEIPADADNVSDE-ELPAPKKAEIPEDADNVSDEDLPPPKQAELPEDTENVSDSELPV 381

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
             ++      + VS+E      K+R+R+       +  +     +    +          
Sbjct: 382 AKKADLPADTDNVSDEELPDSAKKRKRKASELEDGEGSNKKKDPEGGKGEKPSKADAKEK 441

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
            E S        ++ A    E  +      + 
Sbjct: 442 KESSAKRKLEKDDDKAEKSGEAPEKKTKVDAP 473


>gi|332845303|ref|XP_001140720.2| PREDICTED: putative NPIP-like protein LOC613037-like, partial [Pan
           troglodytes]
          Length = 392

 Score = 38.0 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 28/130 (21%), Gaps = 5/130 (3%)

Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
            +P   +  E     +   P          +             ++ +R+R      D  
Sbjct: 265 TSPLATQEAEAEKPPKPKRPRAADVEPSSPEPKRRRFGDVEPSSRKPKRQR-----ADDV 319

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
           D           + +D S                        ++ D S         +  
Sbjct: 320 DPSSRKPKRQRADDVDPSSSKAKRRRADDVDPSSRKPKRRRADDVDPSSSKPKRRRADDV 379

Query: 706 NSSSDPIVKK 715
             SS    ++
Sbjct: 380 EPSSRKPKRR 389


>gi|308235281|ref|ZP_07666018.1| anchor domain-containing protein [Gardnerella vaginalis ATCC 14018]
          Length = 976

 Score = 38.0 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 30/152 (19%), Gaps = 6/152 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +      +    + Q    D        +       K +S +    +   E+    
Sbjct: 668 FKKDEPKDPKPNTEPKNPQPKHEDPKDPKQNPNPKDPKKDKPKSKDPKPKDPNPEKDKPK 727

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLEN 681
               + ++      TD  D   V   +              +        D    +    
Sbjct: 728 DPDNKPKQNPEPKKTDPKDYNPVKPDTPKSPDPKKDDPKPKDKPNNPNYQDRDVPDTKPE 787

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                            TP+   S    DP  
Sbjct: 788 DPKKPDNPTKPKDDKSDTPKEPESKEPKDPKP 819


>gi|195565446|ref|XP_002106312.1| GD16804 [Drosophila simulans]
 gi|194203686|gb|EDX17262.1| GD16804 [Drosophila simulans]
          Length = 2502

 Score = 38.0 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 49/205 (23%), Gaps = 30/205 (14%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
             I   +      +     +G  V   ++   +  S +    Y K  + + +        
Sbjct: 642 KKIPNEVESNFVTEKIIDCRGKTVVEKISQRPRTPSPTTPKKYTKPSQKIPERVPETESE 701

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRR------------------------------RR 637
             +  E       S   T    +RR  R                              R+
Sbjct: 702 PEKDSESETKKKTSVSVTKTETERRNSRTTKTKQPLPLKEPQSKVPAAKSPRKDSLTGRK 761

Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697
           R    +       +  +       D+         + +    +  +   T     +    
Sbjct: 762 RDSLVEETRTTTTTTTTRQGRKPSDTNGSPSIKDRLRSSPRKQKTSPQQTRTPTPAQTRN 821

Query: 698 STPEMESSNSSSDPIVKKTRWWKRR 722
              +++  +SS D    +    +RR
Sbjct: 822 PEDDVDGDSSSPDASPTRVGNERRR 846


>gi|311114163|ref|YP_003985384.1| cna protein B-type domain-containing protein [Gardnerella vaginalis
           ATCC 14019]
 gi|310945657|gb|ADP38361.1| cna protein B-type domain protein [Gardnerella vaginalis ATCC
           14019]
          Length = 984

 Score = 38.0 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 30/152 (19%), Gaps = 6/152 (3%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
               +      +    + Q    D        +       K +S +    +   E+    
Sbjct: 676 FKKDEPKDPKPNTEPKNPQPKHEDPKDPKQNPNPKDPKKDKPKSKDPKPKDPNPEKDKPK 735

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLEN 681
               + ++      TD  D   V   +              +        D    +    
Sbjct: 736 DPDNKPKQNPEPKKTDPKDYNPVKPDTPKSPDPKKDDPKPKDKPNNPNYQDRDVPDTKPE 795

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                            TP+   S    DP  
Sbjct: 796 DPKKPDNPTKPKDDKSDTPKEPESKEPKDPKP 827


>gi|154736702|gb|ABS84878.1| immunoglobulin G binding protein A [Staphylococcus aureus]
          Length = 439

 Score = 38.0 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 42/149 (28%), Gaps = 6/149 (4%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     ++      E  +  + L +       D+  P  + N +   +D  
Sbjct: 210 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKED-G 263

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P  +       +D     +  G    +   ++  +   +       +      N    
Sbjct: 264 NKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDNKKPG 323

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYD 691
             D      +  N    E+G     E+ +
Sbjct: 324 KEDGNKPGKEDGNKPGKEDGNKPGKEDGN 352


>gi|302417142|ref|XP_003006402.1| calpain-1 catalytic subunit [Verticillium albo-atrum VaMs.102]
 gi|261354004|gb|EEY16432.1| calpain-1 catalytic subunit [Verticillium albo-atrum VaMs.102]
          Length = 898

 Score = 38.0 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 74/296 (25%), Gaps = 32/296 (10%)

Query: 439 VEKKLKESLKKDRAR----VQVGAISN-FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493
            E  L +    DR R     +        G+    + +         TK          +
Sbjct: 432 YEDFLNKFQHFDRTRLFNDPKWRCCQRWIGVDVPWKPQYNEKFQVKLTKDSP------MV 485

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553
            S S +     + +           +      +   Y++   R+      +R  VSI + 
Sbjct: 486 ISLSQLDNRYFKGLHGQYRFELHFRVHEQGRPNAEDYIV---RSHGNYLMSR-SVSIEI- 540

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---PSYDKNIECVWQDEALLPIPKSE 610
              ++    + I      +             +     S +  +  V     L     + 
Sbjct: 541 --PDMPAGDYSIFISVKAERYTQLDSVEDVVKRECKHRSGNAKLAQVGYAYDLAHSKAAA 598

Query: 611 SLEDIQDNIVSEESTG----VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
            LE++      +E          +RR++  RRR     +      ++   +     + + 
Sbjct: 599 HLEEVSRLRKEKEQKKASALRKEERRKQWERRRLTRQVNKQQKAKNLEKKERKATKAKEE 658

Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSI-------PPVSTPEMESSNSSSDPIVKK 715
             E  D    +  +          D          P           + S    KK
Sbjct: 659 AEEGDDEGGDDQADEATQQDQNAKDAPKVMTQERLPAEDEKATTPPPAPSKKAAKK 714


>gi|115751599|ref|XP_781622.2| PREDICTED: similar to kinesin-related protein [Strongylocentrotus
            purpuratus]
          Length = 2537

 Score = 38.0 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 69/641 (10%), Positives = 186/641 (29%), Gaps = 40/641 (6%)

Query: 83   FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
              + +AL +E N+   +   +   +T        +            S   E E++    
Sbjct: 1608 VQELEALKEEKNLKDEEISDLEARLTSESQEKSAEEDKVVELESDLASVVQELEALKEEK 1667

Query: 143  NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
            N     + D++     D  +K   +  + E+  +   +L ++   +   K   V  +L +
Sbjct: 1668 NLKDEQISDLEARLNSDSQEKSAEEEKVVELESHLTGVLQELEALKEE-KNQKVGKFLEM 1726

Query: 203  AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
                     N ++ E         +  + + E+       +    I R    +  + ++ 
Sbjct: 1727 QSHL-----NDARQELEFLNEDKNLREEQMAELKSRFANVSQEQDIFREEKVAEAESKLA 1781

Query: 263  RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
               + +  L +       +      +    +  +  +R+    ++   +           
Sbjct: 1782 NVLQEIEALKEGKNLREQHMAELEAMLAHVSQEQDTVREEKVLELESRLSC--VLQEMDT 1839

Query: 323  DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
              ++  +        +      +     ++ +L  +   +  L +  Y I++Q +     
Sbjct: 1840 LKVEETLKEAKATELETRHSEVLNDMERLQDELTRIKDEKARLEAANYEIMSQMQK---- 1895

Query: 383  DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
            DV +  +  E  + +     +L AA E  R  ++       + +       +  R  E +
Sbjct: 1896 DVVTMETQTEEDVAEVEQSHDLHAAIEKLR--KVLTSKDQEICEVKAQSSHEMGRLEELQ 1953

Query: 443  LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
                 +      ++ A      LE  + R+ ++++++  ++         ++ +  +  S
Sbjct: 1954 QCLEEESREREERITA--ELRNLEAEKTRLEAALVKAELELGDSISETCLLKEEMEMMES 2011

Query: 503  ILRSVEEYLLQYTAHNIIV-HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
             L    E  L      +       D    LL+QK   I + +    +             
Sbjct: 2012 RLAEGRESALGQQQQEMEELMVELDSARNLLSQKEDEIEKLQEFMKL------------- 2058

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
                      +       +  S  +       ++ +  +  L+     +  E     +  
Sbjct: 2059 ----------ENEEAIKQEAQSRHETKRLHNLLQQLEGESKLVKEQIRQECETSWQVVCE 2108

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
            E  T +    R ++R      +  +  V S   S   +     ++     +         
Sbjct: 2109 ELRTAMQESEREKQRLEAALWNAEEKQVQSHQFSEHRLQGVCEELRTAMEESEREKERLE 2168

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             A    E    S+        +          K  + W+ R
Sbjct: 2169 VALRKAEEKQESLEKEVKKRKDEVKRVRIESFKNVQDWEER 2209


>gi|328944973|gb|EGG39130.1| translation initiation factor IF2 [Streptococcus sanguinis SK1087]
          Length = 930

 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 6/121 (4%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630
           +  V             +     E      A  P  K+E++  ++             + 
Sbjct: 61  EKPVAAQPSPKKTPAKEAAPVKAEQTEAKAAAQPEAKAETVAPVKRPQSRNFKAEREARA 120

Query: 631 -----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                RR+++  R+P           D  +      +  D    P+D  ++   +   +G
Sbjct: 121 KEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRNG 180

Query: 686 F 686
            
Sbjct: 181 Q 181


>gi|326919998|ref|XP_003206263.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Meleagris
            gallopavo]
          Length = 1167

 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 9/146 (6%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +K               SD     + K I      +                   SEE +
Sbjct: 1024 DKLKIADDGHARNSNSDSDDGEQQHSKRIVSDSDSDNRNKSGSEAGSPRRSSVHPSEEDS 1083

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               R  R+RRR     +D+          S+Q+    S     E    +     +  +  
Sbjct: 1084 DSDRSARKRRRSDSEQSDN---------ESVQSGRSRSGGSDNESRPASRSADSDRDSER 1134

Query: 686  FTENYDVSIPPVSTPEMESSNSSSDP 711
             ++N        +  E E SN+    
Sbjct: 1135 GSDNEGSGRGSGNESEPEGSNNEGSE 1160


>gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
 gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
          Length = 758

 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 39  KGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIHPDYYQI 81
            G +Y   V  + P     AF++    + G L   EI  DY +I
Sbjct: 626 VGEVYDGIVKSIMPFG---AFIEILPGKDGLLHVSEI--DYKRI 664


>gi|322782508|gb|EFZ10457.1| hypothetical protein SINV_11681 [Solenopsis invicta]
          Length = 873

 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 4/158 (2%)

Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
             F        +   N   K        +  K      + + LL     +   D      
Sbjct: 600 NDFENIAERIKRRKENAEKKTSEQGIESNASKRNRTATKKKTLLERIDEDPTVDQAALST 659

Query: 621 SEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
           S+EST +     RR +RR+   +T   D       +   +    S       S + N + 
Sbjct: 660 SQESTEIDGSSMRRAKRRKTSKSTQKEDMEKNESSTDAASSPRKSARNLTRVSSMANES- 718

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +   +     ++   PP S  E+E     ++  V K 
Sbjct: 719 -DGVRNKTNSKFNYDSPPESCDEIEECTPENERTVGKV 755


>gi|299754470|ref|XP_001840052.2| hypothetical protein CC1G_13110 [Coprinopsis cinerea okayama7#130]
 gi|298410771|gb|EAU81759.2| hypothetical protein CC1G_13110 [Coprinopsis cinerea okayama7#130]
          Length = 902

 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 37/137 (27%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
                     +   +++ S + +     +        K+ S     D    +E+    + 
Sbjct: 731 ESEDHAANDPLERKTRSRSRELHSSSNREGSTGAQKRKTRSRSRQPDPASDDEAPSSFKG 790

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            R RR+RR  +     + + S  S  QN    +     E   +         A       
Sbjct: 791 IRTRRQRREGSVPKSISQIRSTTSKSQNPASQAVKRKAEGLAMERTPKRRASAQLQERRT 850

Query: 691 DVSIPPVSTPEMESSNS 707
                  S   +E +  
Sbjct: 851 SPRKAARSAARLEPATP 867


>gi|15705403|gb|AAL05625.1|AF352051_1 proliferation potential-related protein [Homo sapiens]
          Length = 1616

 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +       K  +         +   V + E    I K       + +   E S      
Sbjct: 826 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 882

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 883 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 942

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                     + +  N  + P+  K    KR+
Sbjct: 943 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 974


>gi|19115532|ref|NP_594620.1| RNA polymerase II associated Paf1 complex subunit Tpr1
            [Schizosaccharomyces pombe 972h-]
 gi|26400735|sp|O42668|TPR1_SCHPO RecName: Full=Tetratricopeptide repeat protein 1
 gi|2664248|emb|CAA15833.1| RNA polymerase II associated Paf1 complex subunit Tpr1
            [Schizosaccharomyces pombe]
          Length = 1039

 Score = 38.0 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 3/221 (1%)

Query: 498  SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557
            + A+  L +  E   +  +     ++ + +       K  T  + E      I     + 
Sbjct: 809  NFAMQQLDASIETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSVA 868

Query: 558  LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP---IPKSESLED 614
               +   I++       +     +  + Q        E     E +L      +  S +D
Sbjct: 869  AKLEDARIQREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDD 928

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            +  +   E+ +G  +K+ R++R+ +   +  D+GV  D     +   +          + 
Sbjct: 929  MSLSDDEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTKKRRVNRRVI 988

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            +     +       N +  +      + ++  + +    K+
Sbjct: 989  SEEYTFDQDSDAEGNQEEEVSRTIEEKQDNDITDNQDDNKE 1029


>gi|62202882|gb|AAH93405.1| PHF20 protein [Homo sapiens]
          Length = 550

 Score = 38.0 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|29387348|gb|AAH48210.1| PHF20 protein [Homo sapiens]
 gi|123232482|emb|CAI43146.2| PHD finger protein 20 [Homo sapiens]
 gi|123233700|emb|CAM27594.1| PHD finger protein 20 [Homo sapiens]
          Length = 549

 Score = 38.0 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|327462405|gb|EGF08730.1| translation initiation factor IF2 [Streptococcus sanguinis SK1057]
          Length = 930

 Score = 38.0 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 6/121 (4%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630
           +  V             +     E      A  P  K+E++  ++             + 
Sbjct: 61  EKPVAAQPSPKKTPAKEAAPVKAEQTEAKAAAQPEAKAETVAPVKRPQSRNFKAEREARA 120

Query: 631 -----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                RR+++  R+P           D  +      +  D    P+D  ++   +   +G
Sbjct: 121 KEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRNG 180

Query: 686 F 686
            
Sbjct: 181 Q 181


>gi|302844544|ref|XP_002953812.1| hypothetical protein VOLCADRAFT_94528 [Volvox carteri f.
           nagariensis]
 gi|300260920|gb|EFJ45136.1| hypothetical protein VOLCADRAFT_94528 [Volvox carteri f.
           nagariensis]
          Length = 579

 Score = 38.0 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 38/148 (25%), Gaps = 12/148 (8%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +         G  S +P           D      P+  +++D               
Sbjct: 146 AAETHARLPAGPGRRSTSPDASPPRRRQRHDSPDASPPRRGTIQDASPPRRGTIQDASPP 205

Query: 630 KRRRRRR-------RRRPATDHHDA-----GVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
           +RR+R+        RRR   D  DA     G V D S  +                   +
Sbjct: 206 RRRQRQDSPDASPPRRRQRHDSPDASPPRRGTVQDASPPRRRQRRDSPDASPLRRGAVQD 265

Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESS 705
                     ++ D S P   T +  S 
Sbjct: 266 ASPPRRRQRHDSLDASPPRRGTVQDASP 293



 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 31/149 (20%), Gaps = 4/149 (2%)

Query: 564 YIEKGSPVQ----ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            IEK         A            +  +         +     P         IQD  
Sbjct: 133 QIEKVKTGSGWVSAAETHARLPAGPGRRSTSPDASPPRRRQRHDSPDASPPRRGTIQDAS 192

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
                T       RRR+R+               S   +           P         
Sbjct: 193 PPRRGTIQDASPPRRRQRQDSPDASPPRRRQRHDSPDASPPRRGTVQDASPPRRRQRRDS 252

Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSS 708
            + +         + PP      +S ++S
Sbjct: 253 PDASPLRRGAVQDASPPRRRQRHDSLDAS 281



 Score = 37.3 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 29/129 (22%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
                   +   +               P  + +  +    +     +       RRR+R
Sbjct: 190 DASPPRRGTIQDASPPRRRQRQDSPDASPPRRRQRHDSPDASPPRRGTVQDASPPRRRQR 249

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           R  P       G V D S  +            P   T  +          ++ D S   
Sbjct: 250 RDSPDASPLRRGAVQDASPPRRRQRHDSLDASPPRRGTVQDASPPRRRQRHDSPDASPLR 309

Query: 697 VSTPEMESS 705
               +  S 
Sbjct: 310 RGAVQDASP 318


>gi|292627503|ref|XP_695429.4| PREDICTED: rab effector MyRIP [Danio rerio]
          Length = 1194

 Score = 38.0 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 8/192 (4%)

Query: 532 LNQKRAT-IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG---HKVGSDSQA 587
              KR + + E E +       ++    A +   IE+    +                + 
Sbjct: 717 RESKRESKLREMEKQSERQTVKLMDTSDAVRQINIERQMKKERERQRDIERQVERERERQ 776

Query: 588 PSYDKNIECVWQDEALLP---IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
              +K IE   +    +      K E  ++++  +  E+      +R   ++R+    + 
Sbjct: 777 RELEKQIEKDRERRREIEMQVEKKQERQKEMEKQLKQEQERQSEIERDLEKKRKSIRMEK 836

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                V      Q ++ ++ +         N +L E       E  +      S  E  +
Sbjct: 837 EKLVSVKSREREQELVRETGEASGRALK-RNKSLEEYKYETEKEKVNKISAQRSKSETSA 895

Query: 705 SNSSSDPIVKKT 716
                D    ++
Sbjct: 896 ERKKLDIKTARS 907


>gi|161086926|ref|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus]
          Length = 1221

 Score = 38.0 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/112 (8%), Positives = 24/112 (21%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K  P                    +       + E         +     +    +E   
Sbjct: 715 KPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEP 774

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
              K+          T      +   V++    I +  +     S+ ++ + 
Sbjct: 775 TTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSK 826


>gi|268560560|ref|XP_002638092.1| Hypothetical protein CBG04933 [Caenorhabditis briggsae]
 gi|187035670|emb|CAP25551.1| hypothetical protein CBG_04933 [Caenorhabditis briggsae AF16]
          Length = 662

 Score = 38.0 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 59/251 (23%), Gaps = 21/251 (8%)

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           + + + + +    C Y  G   I+    +   + R  +                  ++  
Sbjct: 61  QSKPTNILADMNNCKYQDGFCEIKKNEIITWDVNRDQK-----------CQFISIGILDG 109

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ----ALVNTGHKVGSDSQ 586
           + N K              I +    +       I+     +      +N         Q
Sbjct: 110 MYNNK------LWVNNKNQIALNFETQKIVNDCNIDLMISDEGFAVRKINRAPSQYPPKQ 163

Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646
            P   +      Q   +    + E  +  QD I   E   + ++ +   RRR        
Sbjct: 164 IPISIEQEVQRQQQHDMRKREQEELRKREQDEIKRREQEDIRKRDQEDARRRDQERQKQY 223

Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706
              + D    +       +   +          E       E              +  +
Sbjct: 224 EADLKDFEKKKQEKLKKEEELEKKKQEKTKKAQEEAERKEIEALRKQRKDEDWTVHDEKS 283

Query: 707 SSSDPIVKKTR 717
              D    +T+
Sbjct: 284 KGVDKKSNRTK 294


>gi|303322128|ref|XP_003071057.1| hypothetical protein CPC735_036180 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240110756|gb|EER28912.1| hypothetical protein CPC735_036180 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 646

 Score = 38.0 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 4/149 (2%)

Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635
                  +  Q       I   + +E    +P+    E+    +          +R    
Sbjct: 378 AEAEAELAQRQKRRISGRIPEAFGEEKPGQLPEQFRGEERPGAVPGTREPAREAERTEES 437

Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
           +R R      +AG+V+ V        D  ++  +    T    +E       +     + 
Sbjct: 438 KRFREG--DKEAGLVAGVGQPPRKESDREEIPEQFRAETPGQPVEERPQAPVQERVAGMA 495

Query: 696 P--VSTPEMESSNSSSDPIVKKTRWWKRR 722
           P      E        +   K++RW +RR
Sbjct: 496 PGAEEPVEAVPPPHEGEEAHKQSRWARRR 524


>gi|242279645|ref|YP_002991774.1| PSP1 domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242122539|gb|ACS80235.1| PSP1 domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 433

 Score = 38.0 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 29/145 (20%), Gaps = 5/145 (3%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +  +           + S          DE      +     D   +      +   R 
Sbjct: 253 DEIEIPLDDWPDMIKPSGSDRGGESDFRSDEPRRGRSEGRGDRDGNSSRPQRSRSDRSRP 312

Query: 631 RRRR--RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            R R  R            G V+      +    S D      +    +  +        
Sbjct: 313 DRSRSDRSNSDRPRPERKPGRVNPEREKTDQPKVSVDKPEVKEERRKDDSQQQDRRKRPV 372

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV 713
             D    P   PE +       P  
Sbjct: 373 RKDR---PQQKPEQQKPEQDKQPAT 394


>gi|196968475|gb|ACG80811.1| hypothetical protein [Chlamydophila pecorum]
          Length = 276

 Score = 38.0 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/148 (7%), Positives = 32/148 (21%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                  ++  +  S   +P      E   ++ +       E                  
Sbjct: 92  KKPSPKESSAKEPSSKESSPKELSPKESSPKELSPKESSPKELSPKESSPKKPSPKEPSP 151

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           ++   +    + ++    +   S    +      S +   +       +  E      + 
Sbjct: 152 KELSPKEPSPKESSAKEPSSKESSPKELSPKKPSSKEPSSKELSPKESSPKELSPKESSP 211

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                  P          S   P  K++
Sbjct: 212 KELSPKKPSPKESSPKELSPKKPSPKES 239


>gi|156102018|ref|XP_001616702.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805576|gb|EDL46975.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1960

 Score = 38.0 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/106 (10%), Positives = 24/106 (22%)

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
           +  E   +     E     RK + ++   +   +   A      +  +    +      +
Sbjct: 118 KPQEKKPEEKKPAEKKPAERKPQEKKPEEKKPAEKKSAEKKLVETKPEEKKVEGKKPEEK 177

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
             +       +       E       P      E       P  KK
Sbjct: 178 KVEEKKPAEKKPAERKPQEKKPEEKKPAEKKSAEKKLVEKKPQEKK 223


>gi|148685336|gb|EDL17283.1| retinoblastoma binding protein 6, isoform CRA_b [Mus musculus]
          Length = 1790

 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
            I     D LF +        + +      S +     DK+     + +      K +S  
Sbjct: 967  IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 1026

Query: 614  DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                   +        + +    R + P ++        + + I +V   S     E   
Sbjct: 1027 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1086

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715
             T        A    E        V      +++S    S D   KK
Sbjct: 1087 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1133


>gi|118091214|ref|XP_420968.2| PREDICTED: similar to KIAA0155 [Gallus gallus]
          Length = 1265

 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 29/129 (22%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +K               SD     + K I      +                   SEE +
Sbjct: 1122 DKLKIADDGHARNSNSDSDDGEQQHSKRIVSDSDSDNRNKSGSEAGSPRRSSVHPSEEDS 1181

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               R  R+RRR     +D+         S   +          +    +       G+  
Sbjct: 1182 DSDRSARKRRRSDSEQSDNESVQSGRSHSGGSDNESRPASRSADSDRDSERGSDNEGSGR 1241

Query: 686  FTENYDVSI 694
             + N     
Sbjct: 1242 GSGNESEPE 1250


>gi|72391136|ref|XP_845862.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175489|gb|AAX69629.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802398|gb|AAZ12303.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 951

 Score = 37.6 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 9/138 (6%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD------KNIECVWQDEALLPI 606
           V       K   IEK    +     G K      A   +       + +     ++  P+
Sbjct: 536 VGNSRRQPKAMEIEKLEGAELAERGGSKSNVMRSAADDEIKNAGNLDSQHRHGTDSDRPL 595

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDS 663
           P+ +   +  D     E +     ++R RRR+      TD   A    +V S      ++
Sbjct: 596 PEGQGTREQGDEETQHEGSEKTEPKKRGRRRKTLHSSETDDRTAETSGEVRSSTVATKET 655

Query: 664 FDMYMEPSDITNHNLLEN 681
             +     +       + 
Sbjct: 656 KKVGTTEGEEKGEATKKR 673


>gi|322710169|gb|EFZ01744.1| Mis12-Mtw1 family protein [Metarhizium anisopliae ARSEF 23]
          Length = 471

 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 36/166 (21%), Gaps = 12/166 (7%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +  +   +      S           +              ES       I    S    
Sbjct: 32  ADFERDDDFQFVRKSKRSKTEESSGSKTTGGGRITAEQVVKESTSTANKAIAPSTSATPG 91

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R  RRR+   A+   +       +     +  +         I          +    
Sbjct: 92  TRRSSRRRQADDASHQDEPQTDRRPTRRSIRVATAGADDSAEGSILRGTSKATSPNREKA 151

Query: 689 NYDVSIPPVSTPEMESSN------------SSSDPIVKKTRWWKRR 722
           +      P  TP   + +            + +  + KK     RR
Sbjct: 152 SKPRRWEPSPTPRRPTESKIALPMSDTPIINRNKEMRKKGGKGNRR 197


>gi|331238707|ref|XP_003332008.1| pol II transcription elongation factor [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|309310998|gb|EFP87589.1| pol II transcription elongation factor [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1107

 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 45/186 (24%), Gaps = 9/186 (4%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             +     S+LR   E      A+        +        +R  + E E      I    
Sbjct: 915  QRKRYGESLLRRTSELSESQEAYESSEIAKIERARQERENERQRLAEAERLRLEEIAAK- 973

Query: 555  GIELADKLFYIE--------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
              EL  K   ++        K +        G K            N E          +
Sbjct: 974  NEELTRKRQEMQESVATWYIKQANSDNESEDGTKKKRKGGGGKRKNNKETGITIVPDDEV 1033

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +    E+ +      +     ++ +   R  R  +   D    SD +   N        
Sbjct: 1034 DEGSEQEEKKRKRKRTKKQSNQKEDQANNRANRAISTGEDENYDSDDAKPVNRSSKKKSG 1093

Query: 667  YMEPSD 672
             +  S 
Sbjct: 1094 KIYKSA 1099


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/167 (8%), Positives = 45/167 (26%), Gaps = 8/167 (4%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
                  ++G+  Q       +  +++   + ++        +   P  + ++     + 
Sbjct: 388 HQSHKDKKQGNNKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQKQQDNNPAATEG 447

Query: 619 IVSEESTGVIRKRRR----RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
               +      K ++     +       D   A    +  +  N  +   +   +  +  
Sbjct: 448 KPVNKKNNRQNKGKQQECQPKVDNEKRNDRKPANNKGNAENTTNQQNKKPNNKRKKRNNR 507

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                +      T+       P       ++ S    ++KK   W R
Sbjct: 508 QRTPEDKSVRRSTKYDIREELPS----TSNNESGLKALIKKPLKWLR 550


>gi|195155519|ref|XP_002018651.1| GL25911 [Drosophila persimilis]
 gi|194114804|gb|EDW36847.1| GL25911 [Drosophila persimilis]
          Length = 5525

 Score = 37.6 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/156 (7%), Positives = 26/156 (16%), Gaps = 3/156 (1%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL---PIPKSESLEDIQDNIVSE 622
            E+    Q             +     +      + E           E  +   +     
Sbjct: 2119 ERSEKEQRQEREKAHQKERHEREKRKQQEREEKEKERKAHHHQPEDKEKEKAHPERKTQT 2178

Query: 623  ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
                   K R+  +  +            +    +   +       E          +  
Sbjct: 2179 HHQEEKEKERKSHQEEKEKERKAQQQEEKEREERKAKEEKERKAQEEREQKERDEKEQQR 2238

Query: 683  AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                 E              E  +   D   K+   
Sbjct: 2239 VQEQREQEKREREQREKEHREKEHRERDHREKEKEQ 2274


>gi|330797953|ref|XP_003287021.1| hypothetical protein DICPUDRAFT_151081 [Dictyostelium purpureum]
 gi|325082984|gb|EGC36449.1| hypothetical protein DICPUDRAFT_151081 [Dictyostelium purpureum]
          Length = 605

 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/203 (10%), Positives = 57/203 (28%), Gaps = 13/203 (6%)

Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI-- 556
            A      + +  +    +++I   + + V     +    +V+ E ++G    +      
Sbjct: 373 QAEKFFDELSKVGMSEDDYSVIGFLNQEKVNPEGQELYKKMVKIEKKYG----IDPDDKE 428

Query: 557 -----ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
                 L    +++ +     +       +    Q            +    L I K  S
Sbjct: 429 GEDIYNLDRAFYWLNRIKECVSTTEEKEILLGLYQIEVLRNPETITNEKNLELSIGKEAS 488

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV--IDDSFDMYME 669
            +   +N+ SE+     +   + +      T   +       S+++     D S +  +E
Sbjct: 489 PDGEPNNLNSEDERKNKKNLPKEKTTTTTTTTSKNKSENKKRSTVEKAALSDLSDEPDLE 548

Query: 670 PSDITNHNLLENGAHGFTENYDV 692
                  +   +       N   
Sbjct: 549 ELQKRQKSTKNSTKKVSKINKKT 571


>gi|313231901|emb|CBY09013.1| unnamed protein product [Oikopleura dioica]
          Length = 713

 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 48/239 (20%), Gaps = 34/239 (14%)

Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-LFYIE---- 566
           +  T           V      + +  I   E ++G             +  F ++    
Sbjct: 282 MHTTEDPYTRPGCPKVKYGFDRELKQYIANLERKYGKLKRFAPKTPFDPEKHFDVKNLFD 341

Query: 567 --------------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-- 610
                         K       + T  K  S    P  +K        +           
Sbjct: 342 AVPGNVLAKIPPLRKEPRATDKIKTLIKGVSTIINPKPEKLKSEKLDSDDSTNGAFDFHS 401

Query: 611 ------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH-HDAGVVSDVSSIQ 657
                       S E  ++++   +      +  +R R   PA +       +   S + 
Sbjct: 402 DDDSDDGNKLIISDESSKEDLKKRKPKSEPARAPKRLRSDSPAENALQQKSKLRIESPVS 461

Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                        +           A                  +E  N+  +   K  
Sbjct: 462 EKSAPPPPPPEGKNAYQRQEKERKEAIKRGRERPPPRATPEPKVLEPPNTPKNGKEKNK 520


>gi|254579771|ref|XP_002495871.1| ZYRO0C04906p [Zygosaccharomyces rouxii]
 gi|238938762|emb|CAR26938.1| ZYRO0C04906p [Zygosaccharomyces rouxii]
          Length = 608

 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 7/156 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K     A  +        S+    + +     + +       S + E  +      +S+ 
Sbjct: 241 KTQAELAQKSNSMSSIPQSKDKQNNSSSNNSVEPKKNTSPKSSTNKESNKTGATKNDSSA 300

Query: 627 VIRKRRRRRRRRRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
             +K      ++     +   D     D +S       S ++  E S +      E   +
Sbjct: 301 STKKESSAGVKKDGTNGNVKKDNSSSKDNNSTAKKDTHSGNVKKENSALNTSKSNEKKDN 360

Query: 685 GFTENYDVSIPPV-----STPEMESSNSSSDPIVKK 715
             T    V          +T   +  ++   P VKK
Sbjct: 361 KPTSKTSVKKENSVSSGTNTTNKKPIDTKKKPPVKK 396


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 24/92 (26%)

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660
           +A     K       +D   +E++    + +R R R R+      D     D    +   
Sbjct: 385 DAPAETTKEADAPKAEDAPKAEDAPKTEKPKRSRTRSRKKDDAPKDETPKVDAVEPEAKA 444

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
           +       +  D               ++   
Sbjct: 445 ETPQAKAAQQPDAKPAAEEPKAPEAKAQDDQP 476


>gi|114589671|ref|XP_516796.2| PREDICTED: u2 snRNP-associated SURP motif-containing protein [Pan
            troglodytes]
          Length = 1029

 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 13/218 (5%)

Query: 505  RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
            +S E +L        +  +       +  +KRA + E E +                   
Sbjct: 810  KSEEHHLYSNPIKEEMTESKFSKYSEMSEEKRAKLREIELKVMKF------------QDE 857

Query: 565  IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
            +E G   +    +  +     +     +  E   + E        E LE    +   ++ 
Sbjct: 858  LESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSKDKKEKDE 917

Query: 625  TGVIRKRRRRR-RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
            +   RK R+RR       +       V   S      + S   + E S   + +      
Sbjct: 918  STPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRD 977

Query: 684  HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                     S          S + S     KK+R   R
Sbjct: 978  VSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSR 1015


>gi|74420524|gb|ABA04723.1| methionyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 692

 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 1/82 (1%)

Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701
           T           +  Q        +  + +        +  A   T              
Sbjct: 79  TKRTVRKAARKPAKKQPATRTPKKVASKKTASKKVAPKKPTAKKVTPRKTAPRKAAPEKA 138

Query: 702 MESSNSSSDPIVKKTRWWKRRK 723
               + ++ P+ KKT+    RK
Sbjct: 139 ARKRSVTTPPV-KKTKPRAPRK 159


>gi|325697663|gb|EGD39548.1| translation initiation factor IF2 [Streptococcus sanguinis SK160]
 gi|327490542|gb|EGF22323.1| translation initiation factor IF2 [Streptococcus sanguinis SK1058]
          Length = 930

 Score = 37.6 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 6/124 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +  +  V             +     E         P  K E+   ++            
Sbjct: 58  ATAEKPVAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKVETAAPVKRPQSRNFKAERE 117

Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +      RR+++  R+P           D  +      +  D    P+D  ++   +  
Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177

Query: 683 AHGF 686
            +G 
Sbjct: 178 RNGQ 181


>gi|114581997|ref|XP_001157704.1| PREDICTED: similar to KIAA1604 protein isoform 3 [Pan troglodytes]
          Length = 909

 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +  + E  +  +  
Sbjct: 719 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 764

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        S    D    +  +        +++R
Sbjct: 765 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 824

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++      +  S      D S    M        ++ +  +NGA    E   
Sbjct: 825 GERRNSFSENERHTHRNKDSENFRRKDRSKSREMNRKHSGSRSDEDRYQNGAERRWEKSS 884

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 885 RYSEQSRESKKNQDRRREKSPAKQK 909


>gi|225456394|ref|XP_002280398.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1054

 Score = 37.6 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 60/210 (28%), Gaps = 25/210 (11%)

Query: 539 IVEYEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
           + + E +  +    V      +     +EK +  +   + G K    S+    D+     
Sbjct: 264 LADKEQKGKIRKRKVTPSKSTSPGETSMEKPAKKRKQTSVGDKQRPSSEVEGEDEVEASA 323

Query: 598 WQDEALLPIPKSESLEDIQD---------------------NIVSEESTGVIRKRRRRRR 636
            +D++        ++++  D                         +        + R ++
Sbjct: 324 SRDDSDEVEDNDTAMKEQSDQEETKSEEEEEEKKEQKTTKKASSRKSVKEDSGAKHRGKK 383

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN-YDVSIP 695
                +    A +    SS  +   D+ D  + P    +            ++  D +  
Sbjct: 384 ASASRSVKSPAKLTKKSSSSTSKKADADDTSVAPKSKESSAKKRKAEKESQKDQSDPAKE 443

Query: 696 PVSTPEMESSNSSS--DPIVKKTRWWKRRK 723
             ++ +  S  +       + K +  K+ K
Sbjct: 444 KTASKKRSSRATEKVSSKDLGKGKTSKKAK 473


>gi|268592825|ref|ZP_06127046.1| translation initiation factor IF-2 [Providencia rettgeri DSM 1131]
 gi|291311610|gb|EFE52063.1| translation initiation factor IF-2 [Providencia rettgeri DSM 1131]
          Length = 912

 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 34/156 (21%), Gaps = 8/156 (5%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           + + G +I      +  +      K    +                +     E   +  A
Sbjct: 178 QQKPGKAIESNADKQRREAEAAELKRKAEEETQRKVEAEARRVAEEARKMAEENGEKWTA 237

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                +                     K   RR R R A         +      N + +
Sbjct: 238 ETKTEEDSDYHTTTSTHARAAEDESDEKEEGRRSRNRTAK--------APRQKKGNKLSE 289

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698
             D   E +   +         G +     + P V+
Sbjct: 290 KADREEERAAGRSGRSKGKQRKGSSLQQSFTKPAVA 325


>gi|163937858|ref|NP_035377.2| E3 ubiquitin-protein ligase RBBP6 isoform 1 [Mus musculus]
 gi|97180308|sp|P97868|RBBP6_MOUSE RecName: Full=E3 ubiquitin-protein ligase RBBP6; AltName:
            Full=Proliferation potential-related protein; AltName:
            Full=Protein P2P-R; AltName: Full=Retinoblastoma-binding
            protein 6; AltName: Full=p53-associated cellular protein
            of testis
          Length = 1790

 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
            I     D LF +        + +      S +     DK+     + +      K +S  
Sbjct: 967  IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 1026

Query: 614  DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                   +        + +    R + P ++        + + I +V   S     E   
Sbjct: 1027 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1086

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715
             T        A    E        V      +++S    S D   KK
Sbjct: 1087 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1133


>gi|83942388|ref|ZP_00954849.1| hypothetical protein EE36_15147 [Sulfitobacter sp. EE-36]
 gi|83846481|gb|EAP84357.1| hypothetical protein EE36_15147 [Sulfitobacter sp. EE-36]
          Length = 227

 Score = 37.6 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 36/141 (25%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++    +             +    ++      Q+ A  P  ++++ +            
Sbjct: 87  QRRDQQERENRERQAERDRERVERQEREAAQAGQNTADQPAAEADTGDKSDAPQQDNAKG 146

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              ++RR R   +       D+   SD    Q+      ++   P +             
Sbjct: 147 DAPKRRRSRSNNQNDNAPKSDSAPKSDGDDTQDGSAAEDNLVDTPENKPKPRRAPRRKPA 206

Query: 686 FTENYDVSIPPVSTPEMESSN 706
                       S  + E++ 
Sbjct: 207 PKAEASEPAKDNSGDQPEAAE 227


>gi|325119321|emb|CBZ54875.1| hypothetical protein NCLIV_053000 [Neospora caninum Liverpool]
          Length = 1356

 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 36/146 (24%), Gaps = 3/146 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+            + G   +     +      +DE           E+ +     E   
Sbjct: 509 ERVKKADERGRKEDERGKKEEERGRKEEERGRKEDERGKKEEDRGKQEEERVKKEDERGK 568

Query: 626 GVIRKRRRRRRRRR--PATDHHDAGVVSDVSSIQNVIDDS-FDMYMEPSDITNHNLLENG 682
           G   + ++   R R    +   D          +    DS  +      +  N +  E  
Sbjct: 569 GEDERGKKEEERGRLDRRSKEADEEEKRRRGEERAWRSDSTEERRRGDEEEKNADKREER 628

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSS 708
                 +          P+  ++ S+
Sbjct: 629 RAEGKRDQAAYREREGAPQDAAAESN 654


>gi|296425724|ref|XP_002842389.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638655|emb|CAZ86580.1| unnamed protein product [Tuber melanosporum]
          Length = 1072

 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 10/232 (4%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            +R        + R++    +     ++      D+  Y   +KR T+   + +   ++ 
Sbjct: 709 KLRITGKRIDHLERALRREEVNVLPKDLERQRAEDLAAY-EKKKRITLANSKRQHEEAVA 767

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           +   +     ++   +    Q            ++     +  +   +  A     + E+
Sbjct: 768 LKRRLSRLVPIYETFRNDIKQQRHQEFESRRKAAEKQLEVEMGKRRQEVRAAKERKRKEA 827

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
               +  +  EE      + R R+     A    +     +            D      
Sbjct: 828 EAAERRRVEEEERARKEEEERVRKEAELRARMAEEKAKRDEERKR-------LDEIAAKQ 880

Query: 672 DITNHNLLENGAHGFTENYD--VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                 + E  A    E      + P   TP +E+  S      K + W  R
Sbjct: 881 RQREQEVEERKARERAERESLKRAAPVEETPAIEAPGSRRWAPPKASSWRDR 932


>gi|289719187|gb|ADD17182.1| SuAT1 [Theileria annulata]
          Length = 488

 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 28/110 (25%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV+   +        S       + E    ++   P          Q      E  G  +
Sbjct: 352 PVEIGSDEEDHESEISDIELLFSSDEEHETEKIAKPKKPRIRRPRKQKPESETEKVGKPK 411

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
           ++R R R+++P  +              +  +       +   I      
Sbjct: 412 RKRGRPRKQKPELEEPKRKRGRPKKLKPDERETDHIEVHKQVRIDKRKSK 461


>gi|195117666|ref|XP_002003368.1| GI17878 [Drosophila mojavensis]
 gi|193913943|gb|EDW12810.1| GI17878 [Drosophila mojavensis]
          Length = 693

 Score = 37.6 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 38/156 (24%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           + S  +   +   +     +      N +     E+     +S+S  D +     E    
Sbjct: 341 RESKGRRERSADEQEKKGRRRGDSRSNEQTKSSRESRRRRDRSDSSADERSKKTKESKER 400

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             R   R   R    +   +    +  S  +    DS           +           
Sbjct: 401 RNRSNSRADERTGQQSRAAERSKKTKESKKRRSRSDSSAHERSEKAKESRARGTRSNSRE 460

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                            S       ++K+T+  +RR
Sbjct: 461 DGRVKSKEKKRRGERSSSRTDERIKLMKETKTMRRR 496


>gi|325688736|gb|EGD30745.1| translation initiation factor IF2 [Streptococcus sanguinis SK115]
          Length = 930

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 7/153 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +  +  V             +     E         P  K E+   ++            
Sbjct: 58  ATAEKPVAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKVETAAPVKRPQSRNFKAERE 117

Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +      RR+++  R+P           D  +      +  D    P+D    N  ++G
Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPND-RRDNRGQDG 176

Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715
                 +   +      P+    +  +     K
Sbjct: 177 RRNVQNHQGFNGQNRQQPQGPKIDFKARAAALK 209


>gi|294657626|ref|XP_459918.2| DEHA2E14080p [Debaryomyces hansenii CBS767]
 gi|199432831|emb|CAG88160.2| DEHA2E14080p [Debaryomyces hansenii]
          Length = 1314

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 19/226 (8%)

Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551
            I  +   A    R +E    ++ A    +    ++      +KR +++   +   +SI 
Sbjct: 617 LIDEEEKQAKEYERLMEIERKKHEAE---LRARKELAKQRKREKRKSLL---SSRKLSIL 670

Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611
           V      +++   +     +             S +  + K  + +             +
Sbjct: 671 VKDDANNSEQDITVTDSDALSQPKRQSRNQAMRSISEGHGKESDDL-------------T 717

Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
            ED+++      +    R+R+     RRP +         +   I+   D     Y +  
Sbjct: 718 KEDLENLKRRSVTQPTPRRRKTPVLTRRPVSRLDPLWTAYENEEIERAQDALEAEYRDAD 777

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             T   +         ++ +V   P    +        + +  K+R
Sbjct: 778 FKTKKKINRESMVSVMDDKEVDNEPHVDDDATDEVQDEEAVKAKSR 823


>gi|120864890|emb|CAL51160.1| immunoglobulin G binding protein A [Staphylococcus aureus]
          Length = 466

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 41/177 (23%), Gaps = 2/177 (1%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     +  K    E      A            +  +     E   +   
Sbjct: 267 EQRNGFIQSLKDDPSV-SKEILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGK 325

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                  +   +      + +       +  +   ++P  +  +     D         +
Sbjct: 326 EDNNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGN 385

Query: 663 SFDMYMEPSD-ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + N +     G T N        +  ++ + N  +D  + K   
Sbjct: 386 KPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 442


>gi|32492948|gb|AAN08621.1| medulloblastoma antigen MU-MB-50.72 [Homo sapiens]
          Length = 550

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLEPRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|301611581|ref|XP_002935318.1| PREDICTED: hypothetical protein LOC100485530 [Xenopus (Silurana)
           tropicalis]
          Length = 555

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 2/157 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K     A  +    V       +       V  +E           +  + NI+   ++ 
Sbjct: 144 KDDLEAAEDSKDIAVNGAQTEGNKIPVTTEVKFEEESAKKVPERKEDKNESNILEAIASD 203

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             R++++        +   ++G  ++++++ NV + + +  +E       N  E      
Sbjct: 204 EKREKKKAEHSEIKPSGKEESGKEAEITTLTNVKEKNMEEKIETVIEIEPNSKEENVEKD 263

Query: 687 TENYDVSIPPVSTPEMESSNSSSDP--IVKKTRWWKR 721
            E    SI   S+ + + +        + KK +W + 
Sbjct: 264 QEIKAESIKETSSDDKKETGEEKTAMNLAKKKKWKRP 300


>gi|148685341|gb|EDL17288.1| retinoblastoma binding protein 6, isoform CRA_f [Mus musculus]
          Length = 1741

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
            I     D LF +        + +      S +     DK+     + +      K +S  
Sbjct: 918  IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 977

Query: 614  DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                   +        + +    R + P ++        + + I +V   S     E   
Sbjct: 978  SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1037

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715
             T        A    E        V      +++S    S D   KK
Sbjct: 1038 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1084


>gi|148685335|gb|EDL17282.1| retinoblastoma binding protein 6, isoform CRA_a [Mus musculus]
          Length = 1775

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
            I     D LF +        + +      S +     DK+     + +      K +S  
Sbjct: 952  IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 1011

Query: 614  DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                   +        + +    R + P ++        + + I +V   S     E   
Sbjct: 1012 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1071

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715
             T        A    E        V      +++S    S D   KK
Sbjct: 1072 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1118


>gi|56204065|emb|CAI19246.1| PHD finger protein 20 [Homo sapiens]
 gi|57284132|emb|CAI43144.1| PHD finger protein 20 [Homo sapiens]
          Length = 543

 Score = 37.6 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547
            G   ++    V  ++ + +         + +      +     L+       +++ +  
Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++NV    E    L   ++                     S  KN +   ++ +     
Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230

Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                + +   +       +E+    +++R R     P     ++  +  ++        
Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290

Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693
           S            + N  +  +  ++EN D  
Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322


>gi|327279384|ref|XP_003224436.1| PREDICTED: microtubule-associated protein futsch-like [Anolis
           carolinensis]
          Length = 1396

 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 34/170 (20%), Gaps = 2/170 (1%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                      + E+G P     +          + S  +      +          E  
Sbjct: 823 RPDEAHPRPRTHAERGRPE-KEDSKREAHPEQEHSESRSRPGAERSRPRPQAEPDHREKE 881

Query: 613 EDIQDNIVSEESTGVI-RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671
           E   +    E          + R  +     + H     S+  S             EP 
Sbjct: 882 ESAPECRPDEAHPRPRTHAEQGRPEKEDSKREAHPEQEHSEPRSHPGAERSRPRPQAEPD 941

Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                        G       +      PE E S   + P    +    R
Sbjct: 942 HHEKEESAPECRPGEAHPRPRTHAERGRPEKEDSKREAHPEQGHSEQRSR 991



 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 38/164 (23%), Gaps = 4/164 (2%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
                  +            +  +    P   +               KSE+  +     
Sbjct: 384 RPEERHSRARTHAGSEQPESEESAPRTRPDAARPRPRSESSRPEHEDSKSETHRESTCPE 443

Query: 620 VSEESTGVIRK-RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             +  +    +  R R RR     +        +         DS       +  +    
Sbjct: 444 AEDSKSRSRPEAERSRPRRHPERDNPEKEDTKGEAHRESE---DSEPRSHPEAARSRSRP 500

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            E   H   E+      P  T     +++  D  VK+     RR
Sbjct: 501 QEERDHHDKEDSVPECRPDGTHPRPRAHAEGDRPVKEDSTTGRR 544



 Score = 37.6 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 29/161 (18%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
                      + E+G P +           +   P      E         P    +  
Sbjct: 758 RPDEAHPRPRTHAERGRPEKEDSKREAHREQEHSEPRSHPEAERSRPRTQAEPDHHEKED 817

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
              +               R R  +     + H     S+  S             EP  
Sbjct: 818 SACECRPDEAHPRPRTHAERGRPEKEDSKREAHPEQEHSESRSRPGAERSRPRPQAEPDH 877

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
                               +      PE E S   + P  
Sbjct: 878 REKEESAPECRPDEAHPRPRTHAEQGRPEKEDSKREAHPEQ 918


>gi|326924573|ref|XP_003208500.1| PREDICTED: THO complex subunit 2-like [Meleagris gallopavo]
          Length = 1604

 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 55/204 (26%), Gaps = 28/204 (13%)

Query: 503  ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
            I+ ++E   +             DV   + +++         + G  I V     L    
Sbjct: 1357 IVTTIESKSVAEKEREKEPSREKDVAKDMKSKEN-------TKGGEKIPVAG--SLKSP- 1406

Query: 563  FYIEKGSPVQ----ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
              + +    +              S S + +   N+  +        I  +         
Sbjct: 1407 --VPRSETSECEREQKRRKVDIHSSPSHSSTVKDNLNELKDSSTKHYINHTTPTLSKSKE 1464

Query: 619  IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
               ++      + R R R ++   D  D              D S      P D T    
Sbjct: 1465 REVDKKDLDKSRERSREREKKEEKDRKD-----------RKRDHSNSDREVPQDSTKRRK 1513

Query: 679  LENGAHGFTENYDVSIPPVSTPEM 702
             ENG  G +++   S  P  +P  
Sbjct: 1514 EENGTTGSSKHS-KSESPSDSPRS 1536


>gi|301623019|ref|XP_002940819.1| PREDICTED: hypothetical protein LOC100135124 [Xenopus (Silurana)
           tropicalis]
          Length = 676

 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 1/156 (0%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
                +   + ++ GS   A     +      +E    +      E+      ++ +   
Sbjct: 310 VEMDSSDSPSKNETGSKRTAGKSKGSDSEDEAEETDTRLETDRESEEESKAKRAKSAGSA 369

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             ++   + +        D+   SD    Q+  +D       P   T+    E+ A    
Sbjct: 370 TLQKGGEKVKAAQKRRKADSEGESDNGRSQSESEDEMPKKNSPKKETDSESAESSASERD 429

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            + +         +   +N       K++   K+RK
Sbjct: 430 SDSESEKESAGQKKR-KANGRKAKSDKESGSAKKRK 464


>gi|254563182|ref|YP_003070277.1| hypothetical protein METDI4845 [Methylobacterium extorquens DM4]
 gi|254270460|emb|CAX26460.1| conserved hypothetical protein; putative pseudouridine
           synthase-like domain [Methylobacterium extorquens DM4]
          Length = 669

 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 27/172 (15%), Gaps = 14/172 (8%)

Query: 565 IEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
           +E+  P  +      H+              +   +D      P  +   + +       
Sbjct: 392 VERLQPSPEKPAPEPHRRVRFRNEEERSAPRDRAREDRPRQDRPGQDRPREDRPRSEGPR 451

Query: 624 STGVIRKRR-------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670
                 +R               R RRR                   +          E 
Sbjct: 452 ENRARDERPGRDEFRRGAPAGDARPRRREAGEAAPAERRGPPRERPSDFEGRPPRERSEG 511

Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
               + +             +                       +      R
Sbjct: 512 RPQRDFHGDSRERGEGAPRRERPSEGRPPERRGPPRDRPRAAEGERPARPPR 563


>gi|300795456|ref|NP_001178668.1| smoothelin-like protein 1 [Rattus norvegicus]
          Length = 470

 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 8/167 (4%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           +EK    +   N   K  SD    +  ++ E    +  +         +    +    + 
Sbjct: 144 LEKQKVDEKETNLESKEKSDVNDKAEPESKEDAGAEVTVKEAETESQKKADVKDQAEPQL 203

Query: 625 TGVIRKRRRRRRRR-----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             V  K  R   +       P  +  + G  ++      VI  S + + E       +L 
Sbjct: 204 QEVDGKEARSDTKELVEPGSPTEEQEEQGKENESEERAAVIPSSPEDWPESPTDEGTSLS 263

Query: 680 ENG---AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +G       +     S    S  E+  S +   P  KK      R+
Sbjct: 264 PDGLGPESTASGETSASASESSPSEVPESPTEPLPSEKKKERAPERR 310


>gi|268570078|ref|XP_002648411.1| Hypothetical protein CBG24674 [Caenorhabditis briggsae]
          Length = 1435

 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 4/109 (3%)

Query: 615  IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            ++D+ +  E      +RRR  R  + +                 V + +     +PS+  
Sbjct: 959  VEDDFIEMEDDSSDEERRRYTRETKESRRSSKQATKRRTP----VRESAKRHSPKPSERA 1014

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             +                  PP S P M           ++    + R+
Sbjct: 1015 GNVRKSKSTEDRRRRSTEDTPPPSAPPMSEERRKMLKRQERMHKAEERR 1063


>gi|326679416|ref|XP_001923475.3| PREDICTED: hypothetical protein LOC407619 [Danio rerio]
          Length = 1551

 Score = 37.6 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 59/234 (25%), Gaps = 2/234 (0%)

Query: 490  AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549
                +++S +  +     E+  ++  +      + S++      + R   +E E +    
Sbjct: 790  RETRKNESEMKEARKNESEKRAIRNESEKRETKSQSEIKESEKREARN--IESEKKEAKK 847

Query: 550  INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
            I+  +     ++    E                  +++   +       + EA   + + 
Sbjct: 848  IDSEMKQARKNESEKKEARKSESEKKEAERVETRKTESEKKEVRKSESEKKEAERKLERK 907

Query: 610  ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
               E  +      E+         ++  RR  ++  +A             +        
Sbjct: 908  SESERKEAKKSESENKEARGNESEKKGARRSESEKKEARQSESEKKEARRSESEKRENRR 967

Query: 670  PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                             T +             +      +   K+TR  +  K
Sbjct: 968  SESEKKEARRNESEKRETRSESEKRETRRNESEKREPRWRESEKKETRRRESEK 1021


>gi|303248244|ref|ZP_07334507.1| translation initiation factor IF-2 [Desulfovibrio fructosovorans
           JJ]
 gi|302490382|gb|EFL50293.1| translation initiation factor IF-2 [Desulfovibrio fructosovorans
           JJ]
          Length = 971

 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 37/142 (26%)

Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640
              + QA S  +  E V +          E+  + Q+   + E        + RR+ RRP
Sbjct: 180 EVEERQAASASETTEAVAETPEAPEATAGETPAEAQEASKAPEEAAAEPGEKDRRKPRRP 239

Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
                    +  +   +     +       +          G  G         P  +  
Sbjct: 240 EPSSAPKVRIISMPDPKKTPPPAPRRPAGEAPRPGSRPGPGGRPGPGAPRFGEGPRPAGR 299

Query: 701 EMESSNSSSDPIVKKTRWWKRR 722
            +     +      K R   RR
Sbjct: 300 PVPGMPPAPGDDASKKRKKDRR 321


>gi|238578643|ref|XP_002388787.1| hypothetical protein MPER_12155 [Moniliophthora perniciosa FA553]
 gi|215450389|gb|EEB89717.1| hypothetical protein MPER_12155 [Moniliophthora perniciosa FA553]
          Length = 610

 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/250 (8%), Positives = 61/250 (24%), Gaps = 18/250 (7%)

Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT------IVE 541
           +G+  ++++       +        +  +  +   ++ +    L  +K         +  
Sbjct: 217 EGSTAVKNEIHEGQKRVEQEAAKAAKAQSKRLKGKSYREAAEKLETEKEPEDSATVEVSL 276

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE------ 595
            E +    +       +    +      P  +            + P             
Sbjct: 277 TEKKATRFVL----DSVVIPPYDKSVSPPPDSSAPEDDTDSDTQRRPKRQAATRRAVAAL 332

Query: 596 -CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH-HDAGVVSDV 653
               +DE      K  S +    +  +       R+R +        T+   +    S  
Sbjct: 333 SDDNEDEGSSGEGKKTSRKRTSKSKPAAHQKPPTRRRAKADDSDESFTEDTSEEEDDSAS 392

Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             +    D +              + +      +   D+ +     P++    +      
Sbjct: 393 DVMSEDEDAAPPKKKTKPTKPAKPVKKLSVSTDSGTDDMDVDDEDKPKVAEKGTKRKGPE 452

Query: 714 KKTRWWKRRK 723
              R  K+RK
Sbjct: 453 DDDRPAKKRK 462


>gi|109947059|ref|YP_664287.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba]
 gi|109714280|emb|CAJ99288.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba]
          Length = 552

 Score = 37.6 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 12/246 (4%)

Query: 58  FVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD---- 105
           FVD G +  GFL   EI  D        Y  +       ++      +    ++      
Sbjct: 301 FVDIGNDIEGFLHVSEISWDKNVSHPNTYLSLGQEIDVKIIDIDPKNRRLRVSLKQLTNR 360

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
                +        +E                 +           D      +       
Sbjct: 361 PFDVFETKYQVGDVIEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I ++ K  + + +                +   +     ++     G  I     +
Sbjct: 421 IKVKILKINKKDKKVSLSAKHLLTSPTEKFAQKHKMDSVIQGKVVSIKDFGVFIHADGID 480

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
            + +       +  E+  G  +        ++  +++     L R  +     A N+   
Sbjct: 481 VLIKNEDLNPLKKDEIKMGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTNND 540

Query: 286 HLVYEE 291
            +   +
Sbjct: 541 KMTLGD 546


>gi|294496457|ref|YP_003542950.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219]
 gi|292667456|gb|ADE37305.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219]
          Length = 1173

 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 8/247 (3%)

Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530
           RI   + +  ++               S     ++  E  + +       +    + +  
Sbjct: 685 RISEELTKLESRRSNAINKLDTTEGHISSTNKEIQQYENEVSRKQMQFEEIGNRGETLEK 744

Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
           LLN K   + + E      +   +   +  K    E+   +Q  +    +  +DS+ P  
Sbjct: 745 LLNSKDEELKQIEEERQ-QMRTEMNETVEKKEHLEEREQSLQQNILQIEEKLADSEIPEL 803

Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
           +K  E + ++   L       + DI   I + E        +  + R + A        +
Sbjct: 804 NKQAEDLDEELRRLDGR----IRDIDGQINALELDKKYATEKMEQNREQIAQMDEKKRTL 859

Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP---PVSTPEMESSNS 707
            +          S +  +E        L         E  +            +   S  
Sbjct: 860 KERIEELKNKITSLESELEEKKQREEELTGELRQLQGERENKETAYSTQRDEVDRVKSRY 919

Query: 708 SSDPIVK 714
                 K
Sbjct: 920 EKAENQK 926


>gi|212540748|ref|XP_002150529.1| 26S proteasome regulatory subunit Rpn2, putative [Penicillium
            marneffei ATCC 18224]
 gi|210067828|gb|EEA21920.1| 26S proteasome regulatory subunit Rpn2, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1118

 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 602  ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                +   E+ E ++  ++S  +    R +RR +++RR + D         VS       
Sbjct: 894  PEQQVKADEAPEKVKTAVLSTTNQAKRRAQRREKQQRRESMDVDQTPTTPKVSGQLPERM 953

Query: 662  DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP--------PVSTPEMESSNSSSDPIV 713
            ++ +  ++  +       E G     E   V           P     +   +   +P+ 
Sbjct: 954  ETDESAVKEGEEAKEATKEEGQKKKAEKEKVGYELENMSRVLPAQLKYLTFPDPRYEPVK 1013

Query: 714  KKTR 717
            + T 
Sbjct: 1014 RPTG 1017


>gi|156093423|ref|XP_001612751.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801625|gb|EDL43024.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1656

 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 44/173 (25%), Gaps = 16/173 (9%)

Query: 556  IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-------EALLPIPK 608
             EL  +   +E+    +A            +A       E   ++       E      K
Sbjct: 1181 EELPVEELPVEEAPKEEAPREEPPIELPPVEAADQLVATEEGLEEGTKESAIEGEDEEAK 1240

Query: 609  SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH---------HDAGVVSDVSSIQNV 659
              + + + +   +EE      KR+ + RR                   G V      +  
Sbjct: 1241 GATKKKVSEKSKTEEKRKKDVKRKIKERRIDQMYKELSLFNLDFLSTGGKVKASKGEKKA 1300

Query: 660  IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
               +        DIT            ++  +      S     S N++ D  
Sbjct: 1301 RRGAPGGKGAKKDITKGGKEGRKEKKQSKQEETQKEQTSGEPQSSENTACDEE 1353


>gi|326671393|ref|XP_684139.4| PREDICTED: hypothetical protein LOC327618 [Danio rerio]
          Length = 1899

 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 48/150 (32%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           K +P +       K     ++           ++E+L   P  ES E+I  +  S+ES  
Sbjct: 621 KDAPSKESKEDSMKDTPSKESNESLLKESKESKEESLKDNPSKESKEEILKDTPSKESKQ 680

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              K    +  +  +     +    +    ++       +   P   +  +  +      
Sbjct: 681 ESLKDTPSKESKGESLKDAPSKESKESLLKESKESKEESLKDPPGKESAKSKDDKTKALS 740

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
            +     I    + +    +++ DP  K++
Sbjct: 741 KKESLEDISNEKSAKSLKDDATKDPSKKES 770


>gi|167918518|ref|ZP_02505609.1| SRM102 [Burkholderia pseudomallei BCC215]
          Length = 514

 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 37/145 (25%), Gaps = 2/145 (1%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
            + +   +     +   +   I+ V +          E       +   ++      +R 
Sbjct: 296 QVHHAADRARGRQRGSRHAARIDRVERRAVERAAEAVEKPPRQPVHRGDDDRARPDERRD 355

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--DITNHNLLENGAHGFTENY 690
            R +RR+      D  ++     ++ V     D        D +     +          
Sbjct: 356 ARSKRRQRVRLQRDDDIILFAERVRVVARAQRDRRFAARLADDSQPAPAQRIERRAARKR 415

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKK 715
                    P  +     +DP  ++
Sbjct: 416 AHVPARAREPRRKQPADRADPDDRR 440


>gi|126335335|ref|XP_001371550.1| PREDICTED: similar to splicing coactivator subunit SRm300
           [Monodelphis domestica]
          Length = 2785

 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 29/149 (19%), Gaps = 10/149 (6%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +                  +            +  +  P  +               S  
Sbjct: 623 RSRSRTPARRRSRTRSPVRRRSRTRSPARRGGRSRSRTPARRGGRSRSRTPARRGGRSRS 682

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               RR R R R PA                            P      +       G 
Sbjct: 683 RTPARRGRSRSRTPARRGRTRSRTP--------ARRGRSRTRSPVRRGRSHSRTPQRRGR 734

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
           + +         T +   SNSS  P +KK
Sbjct: 735 SGSSSERKNKSRTSQRSRSNSS--PEMKK 761


>gi|47223040|emb|CAG07127.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1817

 Score = 37.6 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 38/174 (21%), Gaps = 18/174 (10%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL--------- 612
            +  E+                +     + +N          L   K             
Sbjct: 577 DYEAERSHHRPKEARKDGHRNLEFDREFWKENFFKSDDTSESLAGKKDGEDSCALQKGSD 636

Query: 613 ----EDIQDNIVSEESTGVIRKRRR----RRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
               ED      S +       R +    ++ RR               S + +   DS 
Sbjct: 637 FSFKEDRYAKHASSKDKRTREDREKDKALKKERREEKIREPRPSEREGESRLPHFRADSG 696

Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                     +    E    G  E  D  + PV   ++E          K+ + 
Sbjct: 697 GEKPASGTTVDQEQSEPSEKGPREKTDKRL-PVKEKDLEKMEKRHLEREKRAKT 749


>gi|291234161|ref|XP_002737018.1| PREDICTED: RNA binding motif protein 16-like [Saccoglossus
            kowalevskii]
          Length = 1381

 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 38/152 (25%), Gaps = 6/152 (3%)

Query: 562  LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
             F  E+        +        +++ S  K+ E               S  ++      
Sbjct: 1222 EFKRERSHERDESFHNRRNRDDRTRSVSETKDKETSLDKSPESTETDQASNNEVPKKEAI 1281

Query: 622  EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
               T   R   +             A    +   +    + S +  +  S     + +  
Sbjct: 1282 LSPTTEERPIDKSINDHN-GNSSPVATHNDEGPKVNEKSNVSQEKNLPKSISVEEDQVCE 1340

Query: 682  GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713
             A          +    + E+ES +  S P+ 
Sbjct: 1341 KAVSS-----PKLENADSTEVESKSVESKPVE 1367


>gi|289719197|gb|ADD17187.1| SuAT1 [Theileria annulata]
 gi|289719199|gb|ADD17188.1| SuAT1 [Theileria annulata]
 gi|289719201|gb|ADD17189.1| SuAT1 [Theileria annulata]
 gi|289719203|gb|ADD17190.1| SuAT1 [Theileria annulata]
 gi|289719207|gb|ADD17192.1| SuAT1 [Theileria annulata]
 gi|289719209|gb|ADD17193.1| SuAT1 [Theileria annulata]
 gi|289719211|gb|ADD17194.1| SuAT1 [Theileria annulata]
 gi|289719213|gb|ADD17195.1| SuAT1 [Theileria annulata]
          Length = 488

 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 28/110 (25%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV+   +        S       + E    ++   P          Q      E  G  +
Sbjct: 352 PVEIGSDEEDHESEISDIELLFSSDEEHETEKIAKPKKPRIRRPRKQKPESETEKVGKPK 411

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
           ++R R R+++P  +              +  +       +   I      
Sbjct: 412 RKRGRPRKQKPELEEPKRKRGRPKKLKPDERETDHIEVHKQVRIDKRKSK 461


>gi|296416611|ref|XP_002837968.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633863|emb|CAZ82159.1| unnamed protein product [Tuber melanosporum]
          Length = 867

 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 51/212 (24%), Gaps = 18/212 (8%)

Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEY----EARFGVSINVVIGIELADKLFYIEKGS 569
           Y   N +V    DV +   +++   +       E   G SI +      ++  F   +  
Sbjct: 643 YGGDNTVVDGGEDVAVGGEDEQDDLLSPLVPVEEWDGGKSILLSPDDSASNVHFSRRRRE 702

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             Q +  +  K     +     +  E             + S            +T   R
Sbjct: 703 ARQEMEESEKKRAEKKERKEIKRREEERRAGRHEPQEDCAAS------------TTVSKR 750

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           ++ ++  RR   +           +              +       +      H   + 
Sbjct: 751 RKEKKGERRDRRSGEGTES--GSSTKRGRSRRRGEGEEQDGEREKKEHKERKDEHRERKE 808

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
              S         E          KK + W R
Sbjct: 809 ERESRREERESRREEKERELREKDKKDKSWSR 840


>gi|302664485|ref|XP_003023872.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
 gi|291187891|gb|EFE43254.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
          Length = 691

 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 42/172 (24%), Gaps = 12/172 (6%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603
                        E+      ++                S+ + P      + VW++   
Sbjct: 240 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEGSRSEEEGPKQRFPSKDVWEEAPE 299

Query: 604 LP--IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-DAGVVSDVSSIQNVI 660
                   E+  D + +   E+ +      R  R+  R +T+   D       ++    +
Sbjct: 300 SQQLTTAVEAPADSEKSEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPTKTQTTSPTEL 359

Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
                +   P                 E    +I   +  +     + S P 
Sbjct: 360 KKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDAAPPATKSKPA 411


>gi|195354716|ref|XP_002043842.1| GM17783 [Drosophila sechellia]
 gi|194129080|gb|EDW51123.1| GM17783 [Drosophila sechellia]
          Length = 2278

 Score = 37.6 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 45/187 (24%), Gaps = 18/187 (9%)

Query: 553  VIGIELADKLFYI--------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                      F +        EK        +      S   A   +   +    +    
Sbjct: 920  ESDESKETPEFEVPTTVAPAGEKIPTSSITPDEEPTATSAPVAKPDEDVEKETSTEIPTD 979

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP----------ATDHHDAGVVSDVS 654
                SE  ED   +    E      +   +                 +D   A       
Sbjct: 980  TPASSEEDEDSSTDQTPSEMPEKKPETPAQTPEEEEDIVGATAAPTTSDEVPAVQRLPEE 1039

Query: 655  SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             +  +   S +  ++  D T    ++      TE  + +       E +  ++  +  ++
Sbjct: 1040 VLAEIPQPSTETGIKQQDETTGAPIDRKEPYVTEIDEEATTVAPISEKDEKSTEEEKSME 1099

Query: 715  KTRWWKR 721
                W+R
Sbjct: 1100 AEANWRR 1106


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score = 37.6 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 29/148 (19%), Gaps = 2/148 (1%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           A +LF IE+                 +  P    +   +   +   P       E+    
Sbjct: 352 ASELFAIERLIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGHTA 411

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN--VIDDSFDMYMEPSDITNH 676
                      KRR     +    ++      +             +             
Sbjct: 412 EKKNSGGNNKPKRRFNSDNKNGKGENKSGKGGAGKPKGNRDGQARSNGKPSGNRKPNNKP 471

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMES 704
              +      + N          P++  
Sbjct: 472 AGAKPSNGKPSGNKPSGQRRKPRPQVAK 499


>gi|331251926|ref|XP_003338544.1| hypothetical protein PGTG_20190 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309317534|gb|EFP94125.1| hypothetical protein PGTG_20190 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1775

 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 23/212 (10%)

Query: 487  CK--GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544
            C   G       +      L   +E  ++     +       V  +L+     T+ E E 
Sbjct: 1576 CNLPGRSLNLDGNPAPPMTLPEAQEEEVRQITETVRSAWDPAVAQHLI-----TLDEAE- 1629

Query: 545  RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604
                         ++  +   +    +    +   +  S SQ P    + +         
Sbjct: 1630 -------------MSPDVSAADAMRGLSIDQSQPAQGTSGSQRP--PDSQKDKEPTPPPN 1674

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664
              P S + ++      S++S   I +R +++  R+P+T   +    S  S        + 
Sbjct: 1675 AQPSSAANKENPAPPSSDQSDLPIPRRSKKKAPRQPSTPPSEPQDSSVGSGKNRQPTPTQ 1734

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
                E  D       +        N     P 
Sbjct: 1735 YSDDEEEDEDEEEDEDGDESAEERNRRRKEPK 1766


>gi|238588514|ref|XP_002391747.1| hypothetical protein MPER_08780 [Moniliophthora perniciosa FA553]
 gi|215456841|gb|EEB92677.1| hypothetical protein MPER_08780 [Moniliophthora perniciosa FA553]
          Length = 376

 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 13/166 (7%)

Query: 565 IEKGSPVQALVNT----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620
           +E+G                        S DK      + +   PI    +         
Sbjct: 84  LEEGDSSDLSDPPFPITPSSSSPLLAPESSDKPSRPSLKLDLAAPITDGSTSVPSSAASN 143

Query: 621 SEESTGVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676
           +   +    K+     RR   R    D  +A  +S V         S D  +E S +T+H
Sbjct: 144 AAAPSNGRSKKLFTSMRRPSMRSETADGPEANQLSAVEDKVPT--PSIDASLETSSVTSH 201

Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
             +          +  S+PP    E +      +P  K + W+KRR
Sbjct: 202 GQVNGSGSRSPSPHPASVPP---RETKEKEKEKEPHRKPSGWFKRR 244


>gi|71755163|ref|XP_828496.1| lectin [Trypanosoma brucei TREU927]
 gi|70833882|gb|EAN79384.1| lectin, putative [Trypanosoma brucei]
          Length = 545

 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/120 (10%), Positives = 31/120 (25%), Gaps = 2/120 (1%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             +       +      A   +K  +   +  A     + +  E+        E      
Sbjct: 351 ANEGEKPLHEEKVEQHDAEKQEKEHKEEEKQNADKHHEEGKRDEEEHQQAEEREEDKQEG 410

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689
           +R+    RR+  ++  +        + ++    +     E          E  A    E+
Sbjct: 411 RRQSPNPRRKHRSEDQEEENHKGKRTSESKKRSAESTNDEKEVSGTD--EEEAAELRHES 468


>gi|149640554|ref|XP_001507864.1| PREDICTED: similar to KIAA1315 protein [Ornithorhynchus anatinus]
          Length = 1963

 Score = 37.6 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 44/171 (25%), Gaps = 1/171 (0%)

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              E         +         +  +  S        ++      +   L     +  +
Sbjct: 316 PDPEYKSPHVSSVREKESSIRERSHQRGDSQGDERVERQSERSQNLNRKELKSYFKDDRK 375

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG-VVSDVSSIQNVIDDSFDMYMEPSD 672
                  SE+     R+  R       +    D           +   +        PSD
Sbjct: 376 SDPKAKFSEKDEEQRRRCGRGAIPHPRSEMGRDPHWSTKGHPEERRGREGDGKRDRGPSD 435

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            +  +   + +   + N+       S+ + E  NS S     +T   ++R+
Sbjct: 436 QSFWDGRPSPSTSSSRNHRRPYSNESSSKHEWENSYSKAERHRTEEKRKRE 486


>gi|332814858|ref|XP_515952.3| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 4 [Pan
           troglodytes]
 gi|332814860|ref|XP_001157639.2| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 2 [Pan
           troglodytes]
          Length = 908

 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +  + E  +  +  
Sbjct: 718 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 763

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        S    D    +  +        +++R
Sbjct: 764 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 823

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++      +  S      D S    M        ++ +  +NGA    E   
Sbjct: 824 GERRNSFSENERHTHRNKDSENFRRKDRSKSREMNRKHSGSRSDEDRYQNGAERRWEKSS 883

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 884 RYSEQSRESKKNQDRRREKSPAKQK 908


>gi|289582242|ref|YP_003480708.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
 gi|289531795|gb|ADD06146.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
          Length = 1189

 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 61/217 (28%), Gaps = 7/217 (3%)

Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA-RFGVSINVV 553
               +   I R  E+  L+  +    +      +   +      I + E+ R    + + 
Sbjct: 295 DLEDLNAEIERKGEDEQLRIKSEIEEIKGDISRLEDKIEASEEQIEDAESTRREAFVQID 354

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              E  ++L    +   ++            ++    +  I+ V  +   L    +E   
Sbjct: 355 RKQETIEELEDEMREHKLEKAQLKTEIQERKTKRDELEAEIDAVDTEFDELKADLAERKS 414

Query: 614 DIQDNIVSEESTGVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD--MY 667
           D+++    +      + R     RRR       ++       ++  ++N   D       
Sbjct: 415 DLEEAKTEKNDRQREQDRLLDEARRRSNTISEKENTIEERRKELPELENRRSDLERELEK 474

Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
            E +      ++++                   + + 
Sbjct: 475 AEKNRANISEVVDDLKTEKRRTQSEMDELDDKIQAKQ 511


>gi|260827090|ref|XP_002608498.1| hypothetical protein BRAFLDRAFT_126633 [Branchiostoma floridae]
 gi|229293849|gb|EEN64508.1| hypothetical protein BRAFLDRAFT_126633 [Branchiostoma floridae]
          Length = 1727

 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 40/149 (26%), Gaps = 6/149 (4%)

Query: 566  EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            E    V    +        +    +D + E       L  I     +  I+  + +    
Sbjct: 1055 EGDKNVSYFTSRVMHAERPTSQEGWDSSDEDTLDIRPLPNIMDLPKIPKIRQTVTTSREK 1114

Query: 626  GVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LL 679
               + +    + ++RRR    + H      +    +    D+ +   +       +  + 
Sbjct: 1115 EKAKDKSSSYKGKKRRRDSTVEGHQKERTKEKKRDREKRKDTGEQAKKRKSDAEEDVSVS 1174

Query: 680  ENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             +      +    S    S    +  + S
Sbjct: 1175 NSSRRKRMKAKRSSSRRQSREREKRRDES 1203


>gi|195108175|ref|XP_001998668.1| GI23508 [Drosophila mojavensis]
 gi|193915262|gb|EDW14129.1| GI23508 [Drosophila mojavensis]
          Length = 3615

 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 10/167 (5%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEEST 625
            K S  +       K   +++  S +   +     EA+  I ++E     I        ST
Sbjct: 3035 KASAEETHELPERKTTRNTRKASAETVEQHEPAKEAMDVIEEAEEPLSKILRVEEPAAST 3094

Query: 626  GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              I +RR RR+            VV+  S          +   EP+++         +  
Sbjct: 3095 TPIIRRRGRRQSVNAEDAPPQDLVVATSSRRGRKATTDTETPAEPAEVKPKRRGRKASAD 3154

Query: 686  FTENYDV---------SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             T   D             P +  E   S+++   + KKT   + RK
Sbjct: 3155 ETHTDDAEPAKKLAKRGRKPSAEVEHHDSDATEPAVEKKTAMRRVRK 3201


>gi|145542899|ref|XP_001457136.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424951|emb|CAK89739.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1878

 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 39/150 (26%), Gaps = 1/150 (0%)

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
           IE+ +       +      D Q     + +E    ++        E+ +  Q      + 
Sbjct: 452 IEQDNRQNNKHTSQESSNLDEQEDINYQKLEDEKTNDVEQQGET-ENNKLEQKENQEIKK 510

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
               +K   ++  ++  ++        + SS Q   +       +     N+        
Sbjct: 511 VDSEQKSENKQVEKQEISEVKQVEQDQNKSSSQQNEEVIQQSNKQSEINNNNQEQSKSKS 570

Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                 +  I      +    +      +K
Sbjct: 571 QLNHMQEGQIETHEDFKAIPDSLKQTTQIK 600


>gi|308804599|ref|XP_003079612.1| putativ (ISS) [Ostreococcus tauri]
 gi|116058067|emb|CAL54270.1| putativ (ISS) [Ostreococcus tauri]
          Length = 417

 Score = 37.6 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 1/139 (0%)

Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643
           +  + +     +   +DE    + +  + E    +  ++ES     KR++  RR R  T 
Sbjct: 4   EPPSSTVHPKPDSSDEDEDERHVAERRTKEAPLPSAAAKESVVKREKRKQEARRARDGTL 63

Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYM-EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702
             +A          +    S  +    P  +              ++ D   P       
Sbjct: 64  RSNASSRVRAREDVSCATSSRALDAFPPRQLRKARSACTACCEKQKDVDAPAPERKRKMT 123

Query: 703 ESSNSSSDPIVKKTRWWKR 721
           +    +     +K R  +R
Sbjct: 124 KREKLAEAIEARKKRKAER 142


>gi|325972607|ref|YP_004248798.1| transcription termination factor Rho [Spirochaeta sp. Buddy]
 gi|324027845|gb|ADY14604.1| transcription termination factor Rho [Spirochaeta sp. Buddy]
          Length = 645

 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
             + LV T   +   S+     + +  + + ++ +    SE++ D       ++ +   +
Sbjct: 2   SSEELVQTEAALSVPSEPDKAKRPVRRITRKKSPVVAKASENVADQSAVQEEDKESSEQK 61

Query: 630 KRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
           +RR R ++     R   +   D        ++++      +    P   T     E+ 
Sbjct: 62  RRRGRPKKATTKQREDRSQAQDDQQPQLDLNVEDRNQSVREDSFAPVQQTQGETQEDS 119


>gi|169607431|ref|XP_001797135.1| hypothetical protein SNOG_06771 [Phaeosphaeria nodorum SN15]
 gi|160701407|gb|EAT85422.2| hypothetical protein SNOG_06771 [Phaeosphaeria nodorum SN15]
          Length = 556

 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 57/226 (25%), Gaps = 24/226 (10%)

Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563
           L   +          ++     +V    L ++RA     E                 +  
Sbjct: 75  LHEEQLARAAEEHKRVLQSAELEVQRITLEEERAQARRLE----------------AQHQ 118

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            IE+    +A      +  +        +      + +  L   ++      + +  +E 
Sbjct: 119 EIERLKREKAQQEAEAQRRALEVKQREAEAARQAQEHQRQLEAAEARIKAQQEQDAAAER 178

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                 +  R+ +  + A     A     + + Q     +      P+ IT      + A
Sbjct: 179 QKKEKEEADRKAKEAQDAAARAQAQQTPQIQAPQPTQVAAPIAAPAPTAITTTPSSSSRA 238

Query: 684 HGFTENYDVSI--------PPVSTPEMESSNSSSDPIVKKTRWWKR 721
                N   +                       ++P+ +K    +R
Sbjct: 239 TAANVNQIHAKYLELHSRMKQFRVAFANEHKQKNNPLKEKVGDTRR 284


>gi|239607042|gb|EEQ84029.1| Pal1 cell morphology protein [Ajellomyces dermatitidis ER-3]
          Length = 527

 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 31/116 (26%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +   +    N      S S   +  +        E      K      I D     +   
Sbjct: 109 RRPALPRPENVPPSRPSLSDDKASSRRPARRPSKEESQSRSKGHGRPPIGDIFADPKEPS 168

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
             R +RR RR    +     +  +   +  +       +   +P D  + +   NG
Sbjct: 169 KSRNQRRPRRNSDSSLMDIPSRPIDPEAERRRRERRQRERDAKPKDGKSRSKRSNG 224


>gi|221125712|ref|XP_002153929.1| PREDICTED: similar to Arginine/serine-rich coiled-coil 2 [Hydra
           magnipapillata]
          Length = 406

 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 32/160 (20%), Gaps = 5/160 (3%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
              +    T       +++ S ++N                             +++   
Sbjct: 31  QDDKKKTGTVWDRKDKNRSLSPERNKRRNSSPSPRRKNLSPSPRRKNLSPSPRRKNSSPS 90

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            +R+      R           +   S +             S                 
Sbjct: 91  PRRKNLSPSPRFKNSSSSPRRKNSSLSPRRKNSSPSPRRKNLSPSPRRKNSSPSPRRRNS 150

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR-----WWKRRK 723
           +         TP  +  + S     KK         KRR+
Sbjct: 151 SLSPRRKRSRTPPRKRHSRSRSFERKKKSRSRSPDRKRRR 190


>gi|123468456|ref|XP_001317446.1| AT hook motif family protein [Trichomonas vaginalis G3]
 gi|121900180|gb|EAY05223.1| AT hook motif family protein [Trichomonas vaginalis G3]
          Length = 592

 Score = 37.6 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 52/182 (28%), Gaps = 3/182 (1%)

Query: 532 LNQKRATIVEYEARFGVSINVVIGIELAD---KLFYIEKGSPVQALVNTGHKVGSDSQAP 588
           L +K +++ E E                        + + +              +S   
Sbjct: 188 LEEKSSSLHEKENNNKEQEIKAPEPTEISGNEAEQKLNENNESNKQNQKDQPRPDESNKE 247

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
           +  K  E          + +     D  D   +++     +++R R R+           
Sbjct: 248 NLTKTPEKTNNSSDSPVLLQQPLKGDKNDTEGTDQPETPTKRKRGRPRKNPNGESKQSTP 307

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
                S   + +  S      P ++ N++   +  H   +  D +    +  + E +N+ 
Sbjct: 308 KKPLQSPKNSPLTVSSVNAETPKNLQNNSPKTSEKHEELQKIDDATKENTDNKQEINNNE 367

Query: 709 SD 710
           + 
Sbjct: 368 TK 369


>gi|330914644|ref|XP_003296721.1| hypothetical protein PTT_06899 [Pyrenophora teres f. teres 0-1]
 gi|311330996|gb|EFQ95177.1| hypothetical protein PTT_06899 [Pyrenophora teres f. teres 0-1]
          Length = 1110

 Score = 37.6 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 1/116 (0%)

Query: 555  GIELADKLFYIEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
              ++    +  E+     +            S++     +        +  P    +   
Sbjct: 980  EKDVVQDHYAAERERNARERDSRERVVEKVPSKSLHSRISSSSRPSLSSKRPRDDKDDEV 1039

Query: 614  DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
             +     +E          R +RR+  AT   +   +      +N       +  E
Sbjct: 1040 PVPKGPKAEAKPPTGPANHRDKRRKSGATGDDNIANLFTAGLRKNAKARRGGVRTE 1095


>gi|301606165|ref|XP_002932706.1| PREDICTED: hypothetical protein LOC779458 [Xenopus (Silurana)
            tropicalis]
          Length = 2134

 Score = 37.6 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 8/178 (4%)

Query: 548  VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            V I +V             +      L        S ++  S    +  V  ++A+    
Sbjct: 1871 VPIALVASESTETPKNKRGRRKANTQLEKVTDSDLSVTEVSSKLDLVPEVVNEKAVNKRN 1930

Query: 608  KSESLEDIQDNIVSEESTGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665
              +       +  S             ++R RR  A    D+       + +    +S +
Sbjct: 1931 TGKRNLKSSSDSDSSSKAVEPVLETITQKRGRRGAAAKSLDS------ETTEVKTVESAE 1984

Query: 666  MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                          +      ++     +      E  + N+ +     K+R   +RK
Sbjct: 1985 NVTSNKRRERAPSQKTNNPETSKTTTEPVNKNQATEAVAKNTDNAESPPKSRRGLKRK 2042


>gi|297734459|emb|CBI15706.3| unnamed protein product [Vitis vinifera]
          Length = 1006

 Score = 37.6 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 60/210 (28%), Gaps = 25/210 (11%)

Query: 539 IVEYEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597
           + + E +  +    V      +     +EK +  +   + G K    S+    D+     
Sbjct: 265 LADKEQKGKIRKRKVTPSKSTSPGETSMEKPAKKRKQTSVGDKQRPSSEVEGEDEVEASA 324

Query: 598 WQDEALLPIPKSESLEDIQD---------------------NIVSEESTGVIRKRRRRRR 636
            +D++        ++++  D                         +        + R ++
Sbjct: 325 SRDDSDEVEDNDTAMKEQSDQEETKSEEEEEEKKEQKTTKKASSRKSVKEDSGAKHRGKK 384

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN-YDVSIP 695
                +    A +    SS  +   D+ D  + P    +            ++  D +  
Sbjct: 385 ASASRSVKSPAKLTKKSSSSTSKKADADDTSVAPKSKESSAKKRKAEKESQKDQSDPAKE 444

Query: 696 PVSTPEMESSNSSS--DPIVKKTRWWKRRK 723
             ++ +  S  +       + K +  K+ K
Sbjct: 445 KTASKKRSSRATEKVSSKDLGKGKTSKKAK 474


>gi|154314361|ref|XP_001556505.1| hypothetical protein BC1G_05274 [Botryotinia fuckeliana B05.10]
 gi|150848919|gb|EDN24112.1| hypothetical protein BC1G_05274 [Botryotinia fuckeliana B05.10]
          Length = 556

 Score = 37.6 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 45/156 (28%), Gaps = 1/156 (0%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
            +     +  +  +   +   +  S   +P+  +  +           P ++S  ++ + 
Sbjct: 357 ENPEGTSDDKADDEKADSDIPEEDSKEASPAVQEEDKVEDDSSKENATPVADSDMEVDEP 416

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
               E++    K+R R+R R       +    +  +   + I         P    N N+
Sbjct: 417 KEDGEASASA-KKRSRKRVRNNNRLEAEDTPTTPATPASSKIQKIKTPTATPLASKNQNV 475

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                        V+       +  +   ++    K
Sbjct: 476 KTPTKSPAQTKAAVAKKGRPPVKAANKAQTTPKSPK 511


>gi|198465273|ref|XP_001353572.2| GA15153 [Drosophila pseudoobscura pseudoobscura]
 gi|198150085|gb|EAL31085.2| GA15153 [Drosophila pseudoobscura pseudoobscura]
          Length = 1293

 Score = 37.6 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 9/168 (5%)

Query: 564  YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL-LPIPKSESLEDIQDNIVS 621
             I+K       + NT  +   +  A         +    +      KS+  ++      +
Sbjct: 911  TIDKIQEKAAKIGNTPEEGVVEKIASKRVGRPRKIKTPTSTPQDTIKSKIKKENPPEKEN 970

Query: 622  EESTGVIRKRRRRRRRRRPATDH----HDAGVVSDVSS---IQNVIDDSFDMYMEPSDIT 674
              ++ V ++R  R R+ +  T+        G  S+ SS        + S +         
Sbjct: 971  ANTSAVAKRRVGRPRKSQTPTEDKPEIKPKGRRSETSSTTDKMTTRNTSEEKAKGEPQSK 1030

Query: 675  NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                 E       +    S          ++++++    K+T   + R
Sbjct: 1031 AAETRELVVMAKKKQLTKSTSVTEEDNGPTTSTAAAAAQKETLGRRGR 1078


>gi|268572101|ref|XP_002641234.1| Hypothetical protein CBG09100 [Caenorhabditis briggsae]
          Length = 1136

 Score = 37.6 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/145 (7%), Positives = 34/145 (23%)

Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619
            +    E+    +       K+    +     +  +    +        +E      +  
Sbjct: 449 QQQDKFERMEQERIRQEKEEKLREMERRRQLAEAEKARQAEIDRQAAIYAEQERMAMERE 508

Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
              E      ++R   R R+       + +             +  +  E        +L
Sbjct: 509 RELERIQQEERKREMERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKQKIL 568

Query: 680 ENGAHGFTENYDVSIPPVSTPEMES 704
           E       +     +  +   + E+
Sbjct: 569 EEERQRKIKEQMREMEKIRKEQEEA 593


>gi|327302548|ref|XP_003235966.1| beta-1,3-glucanase [Trichophyton rubrum CBS 118892]
 gi|326461308|gb|EGD86761.1| beta-1,3-glucanase [Trichophyton rubrum CBS 118892]
          Length = 928

 Score = 37.6 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 49/202 (24%), Gaps = 40/202 (19%)

Query: 555 GIELADKL----FYIEKGSPVQALVNTGHKVGSDSQAPSYDK--------NIECVWQDEA 602
              +        F   +    +             +  + D+          E +     
Sbjct: 66  DEGVHTPDEDDVFDDRRHRSRKREQRPSRDRQHRDRVRTRDERVAWDSATESEDIVDSRP 125

Query: 603 LLPIPKSESLEDI-------------------QDNIVSEESTGVIRKRRRRRR------R 637
           +   P + +                       +    ++ES     K+R R R      R
Sbjct: 126 IFARPPNANHSPRTDRRERDRDRERHSHYPSPRAGHKAKESPATSPKKRDRERDREGHNR 185

Query: 638 RRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695
            RP  D    + G        +   D   +     +D   H   E      + N    + 
Sbjct: 186 HRPRRDSTADEGGDRRLRDRRRRDYDTDQERKHNETDTRRHGRREKHTSNDSANSATVLL 245

Query: 696 PVST-PEMESSNSSSDPIVKKT 716
                 +++  N  +D  +KK 
Sbjct: 246 SSDALAQLDQLNRKADEDMKKK 267


>gi|313230126|emb|CBY07830.1| unnamed protein product [Oikopleura dioica]
          Length = 420

 Score = 37.6 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 31/134 (23%)

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
           +           +A       +       +    ++T    K  +RRRR+  ++      
Sbjct: 70  TAKDKSPMRSIKKASPARRTRKDSTPSDSSPPRRKATRRDSKSPQRRRRKDSSSVSPPRR 129

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
              D  +              P      +          ++ D  +         S    
Sbjct: 130 TRMDSDTSPPRKKSMDSEKSPPRRKRKDSDTSPPRRKRVDSEDSPLRRRRKDSDASPPRR 189

Query: 709 SDPIVKKTRWWKRR 722
                 ++   ++R
Sbjct: 190 KRIDSDESPHRRKR 203


>gi|302760881|ref|XP_002963863.1| hypothetical protein SELMODRAFT_80512 [Selaginella moellendorffii]
 gi|300169131|gb|EFJ35734.1| hypothetical protein SELMODRAFT_80512 [Selaginella moellendorffii]
          Length = 943

 Score = 37.6 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%)

Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639
           K     + P  D   E   + +A      SE  +        ++     +++ + R RR 
Sbjct: 820 KPSRKGEEPKADIQKERDEKAQAKDAQYTSEPEDHATTKDDKDQRRSRDKRKDKSRDRRE 879

Query: 640 PATDHHDAGVVSDVSSIQNVIDD 662
            ++       V           +
Sbjct: 880 ESSKERSKRKVRSFGISTKRATE 902


>gi|325686962|gb|EGD28986.1| translation initiation factor IF-2 [Streptococcus sanguinis SK72]
          Length = 930

 Score = 37.6 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 6/124 (4%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
           +  +                +     E         P  K+E+   ++            
Sbjct: 58  ATAEKPAAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKTETAAPVKRPQSRNFKAERE 117

Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +      RR+++  R+P           D  +      +  D    P+D  ++   +  
Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177

Query: 683 AHGF 686
            +G 
Sbjct: 178 RNGQ 181


>gi|108712009|gb|ABF99804.1| hypothetical protein LOC_Os03g62388 [Oryza sativa Japonica Group]
          Length = 664

 Score = 37.6 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 14/169 (8%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
             E  D      +G P   ++    +  +     S         Q + +      + +++
Sbjct: 465 DQECNDPENQYHEGEPYDHVIEQEPERDARETGTSMKLRNRRKLQKDGIPEHTADDIMDE 524

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
                 S+E           R +++      +  +  + S        S D  +E S   
Sbjct: 525 DFGEPPSDEQDNDSGDEYTARGKQKGRRKSREKNINKEPSRG--TKRTSGDSTIEESQKQ 582

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                ++ A    +        V  PE            KK     RRK
Sbjct: 583 KLQKNKSKASSGGQKKTSKDSSVEQPE------------KKLTHRIRRK 619


>gi|114661642|ref|XP_001163907.1| PREDICTED: retinoblastoma-binding protein 6 isoform 3 [Pan
           troglodytes]
          Length = 1540

 Score = 37.6 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)

Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630
            +       K  +         +   V + E    I K       + +   E S      
Sbjct: 750 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 806

Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
            ++ +       +   +        I      +     +    T     E     ++++ 
Sbjct: 807 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 866

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                     + +  N  + P+  K    KR+
Sbjct: 867 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 898


>gi|157876204|ref|XP_001686461.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68129535|emb|CAJ08078.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 941

 Score = 37.6 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 3/148 (2%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
             +    +V    +A    +      ++       K+E     Q+   +E        RR
Sbjct: 310 QELQKAEQVRIAEEAALQAEEARKDEKERLAEERRKAEEARLAQEAQRAEAQRTEEEVRR 369

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTEN 689
              RR+     H DA   S     +   +    +  E        +   +          
Sbjct: 370 AETRRKMEEQRHADAAAASASKRRKAAAEAQGRLNAERKQVLAKIDEERVRFRTAASDLI 429

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717
               +   S    + + ++      +T+
Sbjct: 430 TQQEVEKSSAVRRDKTVATELQKSMETK 457


>gi|321453432|gb|EFX64668.1| hypothetical protein DAPPUDRAFT_204585 [Daphnia pulex]
          Length = 1195

 Score = 37.6 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 37/163 (22%)

Query: 532  LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591
              +KR    + E R              ++    E+   ++       K    +Q     
Sbjct: 843  EEEKRMRKKQEEEREAFRTKQREEQHRLEESRRQEQEKLLKLREEFIEKTKKATQFNEMP 902

Query: 592  KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651
                   +        +   + D  D I S +       ++R+  R+   T+        
Sbjct: 903  SEKAEKGKKSRKKKDDEDGFVTDGSDRIQSGDEGAGPPSKKRKAERKPRQTETKSRKKGK 962

Query: 652  DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694
                     +         +   +     N       +   S 
Sbjct: 963  SGEERGRTKEKKGRSEGRGAKKGSGKKSSNDVDDGLSSKQKSK 1005


>gi|331224468|ref|XP_003324906.1| pol II transcription elongation factor [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|309303896|gb|EFP80487.1| pol II transcription elongation factor [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1095

 Score = 37.6 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 45/186 (24%), Gaps = 9/186 (4%)

Query: 495  SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554
             +     S+LR   E      A+        +        +R  + E E      I    
Sbjct: 903  QRKRYGESLLRRTSELSESQEAYESSEIAKIERARQERENERQRLAEAERLRLEEIAAK- 961

Query: 555  GIELADKLFYIE--------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
              EL  K   ++        K +        G K            N E          +
Sbjct: 962  NEELTRKRQEMQESVATWYIKQANSDNESEDGTKKKRKGGGGKRKNNKETGITIVPDDEV 1021

Query: 607  PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             +    E+ +      +     ++ +   R  R  +   D    SD +   N        
Sbjct: 1022 DEGSEQEEKKRKRKRTKKQSNQKEDQTNNRSNRAISTGEDENYDSDDAKPVNRSSKKKSG 1081

Query: 667  YMEPSD 672
             +  S 
Sbjct: 1082 KIYKSA 1087


>gi|227872638|ref|ZP_03990970.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841525|gb|EEJ51823.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 652

 Score = 37.6 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 1/158 (0%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK S  +       +   +  A    ++       E       SE    ++D   S ES 
Sbjct: 487 EKKSARKIGTKASQEKHVEKSAEKSAEDSAKASTKEEKKQNQTSEKKAKVKDADKSVESK 546

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             ++  + +  R+       +    +  +  +           E ++ T          G
Sbjct: 547 TDLKATKEKPVRKSVKAKTGEEKSETKSTRAKTAEKSDKTKAGEKTNTTKEEKTAKTKTG 606

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
              + D +       + ++  + S    K +    R+K
Sbjct: 607 ARTSNDKTTEKSVKAKADTKKTESASAEK-SGRRGRKK 643


>gi|195400801|ref|XP_002059004.1| GJ15230 [Drosophila virilis]
 gi|194141656|gb|EDW58073.1| GJ15230 [Drosophila virilis]
          Length = 5756

 Score = 37.6 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 49/181 (27%)

Query: 531  LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590
            L ++K     +  +R G S+  V       +    EK +      +       +S     
Sbjct: 3299 LKDEKSLPASKEASRPGSSVESVKDEHDKQESVKDEKSTEPSRRESVAESAKPESLKDEK 3358

Query: 591  DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650
                         +     +  E  +     + +    R+      +     D       
Sbjct: 3359 SLPASKEATRPGSVAESVKDEHEKPESVKNEKSTEPSRRESVAESTKLESLKDEKSLPAS 3418

Query: 651  SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710
             + S   +V++   D   +P  I +    E+           S    +   + +S  ++ 
Sbjct: 3419 KEASRPGSVVESLQDEQEKPESIKDEKSTEHSRRESVAESAKSESLKAEKSLPASKEATR 3478

Query: 711  P 711
            P
Sbjct: 3479 P 3479


>gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum]
          Length = 8645

 Score = 37.3 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 46/188 (24%), Gaps = 9/188 (4%)

Query: 531  LLNQKRATIVEYEA--RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
            LL  +     + E       SI         +             +V    +        
Sbjct: 839  LLKSENDNSSDEEKVIESPRSIKKTDDENKINNHIE-------TQVVQEIVEEKQKPPTL 891

Query: 589  SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
              +      +       I  S           + +S   +   +   +RR       +  
Sbjct: 892  KMETEDNNGYTSPPGKTIQDSPIKRRGSSIKKTSDSLETVEDNKTDVKRRPSVKKTVENK 951

Query: 649  VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
            +  +   ++     S     + S     N +++       +   +     TPE + + + 
Sbjct: 952  IAVEEEKLEVKRRPSVKKNDDDSAPMEDNKIDDSRQPSMLSPVRTEGKTPTPEEKPAANK 1011

Query: 709  SDPIVKKT 716
               + KK 
Sbjct: 1012 RLSVKKKK 1019


>gi|212527032|ref|XP_002143673.1| stress response protein Nst1, putative [Penicillium marneffei ATCC
           18224]
 gi|210073071|gb|EEA27158.1| stress response protein Nst1, putative [Penicillium marneffei ATCC
           18224]
          Length = 1258

 Score = 37.3 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/102 (8%), Positives = 23/102 (22%), Gaps = 2/102 (1%)

Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQN 658
                  K    E  +   +  +      + R++R   +R+   +             + 
Sbjct: 646 RKEAEKQKRLQEERERQAEIERKQREQKERERKKREDAKRKEVEEREAKEKRLRDKKAKE 705

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700
             D           I       + +   ++         S P
Sbjct: 706 EQDRKLREEQAARIIEPSGKQRSESQSSSQAAVAGPKRASQP 747


>gi|148685342|gb|EDL17289.1| retinoblastoma binding protein 6, isoform CRA_g [Mus musculus]
          Length = 1623

 Score = 37.3 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%)

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
           I     D LF +        + +      S +     DK+     + +      K +S  
Sbjct: 800 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 859

Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                  +        + +    R + P ++        + + I +V   S     E   
Sbjct: 860 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 919

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715
            T        A    E        V      +++S    S D   KK
Sbjct: 920 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 966


>gi|17228437|ref|NP_484985.1| hypothetical protein alr0942 [Nostoc sp. PCC 7120]
 gi|17130288|dbj|BAB72899.1| alr0942 [Nostoc sp. PCC 7120]
          Length = 300

 Score = 37.3 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 39/137 (28%), Gaps = 3/137 (2%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVW-QDEALLPIPKSESLEDIQDNIVSEESTGVI 628
             +  V+  +           + +   +  +DE     P    +   +++  S ++    
Sbjct: 113 DDERPVSKNYSYNRRKYEAEVEDDYAPLPYEDEEEEERPVRARIRPSREDRSSRDNYYEE 172

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
           +  R+ RR      +  D       +       +S++     S     +  E+ +     
Sbjct: 173 QPPRKERRNTTERQEPTDKPRRRPTNRPTTRTSESYEQEDWGSASRQVDDWESSSSEV-- 230

Query: 689 NYDVSIPPVSTPEMESS 705
                      PE++  
Sbjct: 231 RKPRRGNNNPRPEVDED 247


>gi|318081674|ref|ZP_07988987.1| hypothetical protein SSA3_34352 [Streptomyces sp. SA3_actF]
          Length = 475

 Score = 37.3 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 34/156 (21%), Gaps = 9/156 (5%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS---EESTGVIRKRRR 633
             H      +A   D+  +     +      K   ++   +              + R  
Sbjct: 230 DQHAQRMKQKAAGVDRASKSKGARQDAKDRAKVARIKAQGERKQRIRDGRQAAKDKARDA 289

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLENGAHGFT 687
           +R+RRR   +       +   +    +         P                    G  
Sbjct: 290 KRQRRREEKEARTLLGDALAKTAGKRLRKRRKSLAPPIISKTGKKRRKEKPAPPPPRGVL 349

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +      P        +  +       + R W  RK
Sbjct: 350 DKVVKDTPKPPPTMPRAGAAKKKSAGGRRRKWSFRK 385


>gi|289719189|gb|ADD17183.1| SuAT1 [Theileria annulata]
 gi|289719191|gb|ADD17184.1| SuAT1 [Theileria annulata]
          Length = 488

 Score = 37.3 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 28/110 (25%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PV+   +        S       + E    ++   P          Q      E  G  +
Sbjct: 352 PVEIGSDEEDHESEISDIELLFSSDEEHETEKIAKPKNPRIRRPRKQKPESETEKVGKPK 411

Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
           ++R R R+++P  +              +  +       +   I      
Sbjct: 412 RKRGRPRKQKPELEEPKRKRGRPKKLKPDERETDHIEVHKQVRIDKRKSK 461


>gi|157132741|ref|XP_001656118.1| hypothetical protein AaeL_AAEL012508 [Aedes aegypti]
 gi|108871092|gb|EAT35317.1| hypothetical protein AaeL_AAEL012508 [Aedes aegypti]
          Length = 1256

 Score = 37.3 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 45/178 (25%), Gaps = 6/178 (3%)

Query: 551  NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610
             V     LA       + S  ++L      +  DS     D       ++++ + + K +
Sbjct: 828  VVKKEKILAISDLITSRPSRAESLAKRNKYIFGDSSDEDEDPTAPMFLKEDSKVRVMKFD 887

Query: 611  SLEDIQDNIVSEESTG---VIRKRRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSF 664
              E +  +     S+      R +R ++R  R + D  +                     
Sbjct: 888  EDESVTTSEAKSTSSAVLPERRSKRSKKRNSRYSDDEDEKPKSKSKPERIVKNPPPPPKS 947

Query: 665  DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                E  D               E     +     P      +S    +      K +
Sbjct: 948  VKVDESVDYEPPVNKNTRKRKAAEEKPPPVVDPPPPPPPEVKASKSKKIAPKSDPKPK 1005


>gi|327352752|gb|EGE81609.1| hypothetical protein BDDG_04552 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 616

 Score = 37.3 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 6/181 (3%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E +   +I        +       +        +  +K  +  Q      +      +  
Sbjct: 261 EEQLRRAIEESKEDTKSITDDLGSRRGKRSRSDSEANKHAAKRQRTGSPASSLSKHSNSV 320

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
             P    ES  +   ++    +       R +R R    TD       ++  + +    D
Sbjct: 321 SHPPSDDESKPNTSTSLEGNGNRKTRGVARIQREREAQTTDKEPEKETAEPINRRKSRSD 380

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
                 EPS+  +     +     T++         TP + +  SS+ P+ +KT     R
Sbjct: 381 RRKDDEEPSETVSPTKTGSVPPTITQSTP------DTPSVINEPSSTKPLTRKTGRPPAR 434

Query: 723 K 723
           +
Sbjct: 435 R 435


>gi|270012238|gb|EFA08686.1| hypothetical protein TcasGA2_TC006356 [Tribolium castaneum]
          Length = 3867

 Score = 37.3 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 1/233 (0%)

Query: 91   KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150
            KE   + T  ++   +++  D     D    E        +E++++  +  +    S  +
Sbjct: 1576 KECRESPTTPKSPGKELSDKDFLARLDLRSNEEVEKQKQRKESKDKKKLEEDETKKSETK 1635

Query: 151  DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210
              K        +   R    +   K+R   L Q   +   +      +   +       +
Sbjct: 1636 KDKHLEKSKSRE-DSRSEDKKCQKKDRTRKLTQNSSDNSDSDEPKKHSIFDIVDDEPAYI 1694

Query: 211  PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270
                K +  S K     + +  +E  +            R      T  +   D +    
Sbjct: 1695 SMYDKVKARSCKNMQKQEEEKRQEKIKAKFSQLKQSRAKREEKKRSTSWDEDSDSDRERS 1754

Query: 271  LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
               + +    N +      E+        R++Y    SE     +  + E  +
Sbjct: 1755 DKIDHKTKRGNKMLIMSSDEDEPRKSHKKREIYSDSDSERPRQIKSEHNETSE 1807


>gi|161484644|ref|NP_663464.2| hypothetical protein LOC224833 [Mus musculus]
 gi|205371871|sp|Q91Z58|CF132_MOUSE RecName: Full=Uncharacterized protein C6orf132 homolog
          Length = 1206

 Score = 37.3 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 5/155 (3%)

Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
           PVQ       +    +Q  S    +   +       I    +LE  Q      E+ G  R
Sbjct: 311 PVQEAPGASPEEEEATQKTSAPSPLPPSFNIRPASQIYPDRALEPEQPREPRPETPGSPR 370

Query: 630 -KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            ++   +   +         +      +                        +G    ++
Sbjct: 371 LRQSEPQTNGQAGAPPPAPPLPPPAPPLPPPAPSLPPAAPPLPSTELAAPPSSGFMKTSK 430

Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
           +   ++ P   P      +SS+P+     W   R+
Sbjct: 431 SNSPALKPKPKPPSVEDTASSEPVD----WRDPRQ 461


>gi|225427278|ref|XP_002278878.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297742135|emb|CBI33922.3| unnamed protein product [Vitis vinifera]
          Length = 480

 Score = 37.3 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 3/148 (2%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                 +   S    P    +              +       +       S     +R 
Sbjct: 123 RRQRARYDTPSPEPEPRPSDSGREGSDLSPPRQRQRRYHTPSPEPGSKPSGSDFSPSRRP 182

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT---EN 689
           RR+        + D+     +SS + V   S    + P       L  +G+   +    +
Sbjct: 183 RRQTSADVERKNSDSPHFPHISSPRRVGRSSEHQDLSPPRKRRKGLGLSGSPDISPPRRS 242

Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                P +S P     + SS     KT 
Sbjct: 243 TQTDTPDLSPPRKSRKDVSSSKEPSKTG 270


>gi|109100248|ref|XP_001100369.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 4 [Macaca
           mulatta]
 gi|109100250|ref|XP_001100463.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 5 [Macaca
           mulatta]
          Length = 907

 Score = 37.3 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 50/205 (24%), Gaps = 19/205 (9%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +    ++    +  
Sbjct: 718 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR---------------QEHRHQETRTERER 762

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        +  + D    +  +        +++R
Sbjct: 763 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYNRVVNDRDQEMHIDLENKYGDPKKKR 822

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++      +  S      D S    M        ++ +  +NGA    E   
Sbjct: 823 GERRNSFSENEKHRYRNKDSENFRRKDRSKSREMNRKHSDSRSDEDRYQNGAERRWEKSS 882

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 883 RYSEQSRESKKNQDQRREKSPTKQK 907


>gi|162142|gb|AAA30209.1| kinetoplast-associated protein [Trypanosoma cruzi]
          Length = 1052

 Score = 37.3 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 47/157 (29%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +       +  +  +    +   +   ++ A     +  + +  ++    + +  
Sbjct: 737 RKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEAARKRAEA 796

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             RK+      R+ A +        + ++ +   +++     E  D       E+     
Sbjct: 797 AARKKACEEAERKRAEEEAARKQAEEEAARKQAEEEAARKQAEEEDARKQAEEEDARKQA 856

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
            E    +   V   + E S      + KK     R+K
Sbjct: 857 EEEDARTRAEVQEEKAELSVKDRRKLAKKKIERYRKK 893


>gi|308498874|ref|XP_003111623.1| hypothetical protein CRE_03176 [Caenorhabditis remanei]
 gi|308239532|gb|EFO83484.1| hypothetical protein CRE_03176 [Caenorhabditis remanei]
          Length = 350

 Score = 37.3 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 7/165 (4%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           ++    ++L          ++A  Y +       DE      + +++    +     E  
Sbjct: 139 QRKRYRRSLETPEETQIRLAKALEYKRKKYDHETDEEQRARLERDAIRKRAERTNESEEK 198

Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
             +RK +    RR    + + +        D    +N + +      +     N      
Sbjct: 199 ARLRKSKAAEHRRNYLAKESEEKARIRREKDAERRRNSLKNESPEAAQERKAKNAARRRE 258

Query: 682 GAHGFTENYDVSIPPVSTPEMES---SNSSSDPIVKKTRWWKRRK 723
                TE+  +               + +      +KT+   R++
Sbjct: 259 SLKKETEDETLRRRSRDAERRRLYLLNETDEQKERRKTQDAARKR 303


>gi|148685338|gb|EDL17285.1| retinoblastoma binding protein 6, isoform CRA_d [Mus musculus]
          Length = 1680

 Score = 37.3 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%)

Query: 554  IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
            I     D LF +        + +      S +     DK+     + +      K +S  
Sbjct: 857  IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 916

Query: 614  DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                   +        + +    R + P ++        + + I +V   S     E   
Sbjct: 917  SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 976

Query: 673  ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715
             T        A    E        V      +++S    S D   KK
Sbjct: 977  GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1023


>gi|281205357|gb|EFA79549.1| hypothetical protein PPL_07600 [Polysphondylium pallidum PN500]
          Length = 1130

 Score = 37.3 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 31/112 (27%)

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
           L    +  ++E  +      +   +  ++R+    RR   +          +       +
Sbjct: 784 LENERQRSAIERQKQAEEERKKKAIEDQKRKEEENRRKLHEVEMERQRRQEAMRLKKKLE 843

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
             D   E   I    LLE+      E   +         +E      + + K
Sbjct: 844 QEDEEREQKKIAEQKLLEDQKKQLAEKQQLEKEQAEKDRLEKERLVKEQLEK 895


>gi|49482354|ref|YP_039578.1| immunoglobulin G binding protein A precursor [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|295426657|ref|ZP_06819296.1| von Willebrand factor binding protein Spa [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|49240483|emb|CAG39140.1| immunoglobulin G binding protein A precursor [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|295129109|gb|EFG58736.1| von Willebrand factor binding protein Spa [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 516

 Score = 37.3 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 44/176 (25%), Gaps = 8/176 (4%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     ++      E  +  + L +       D+  P  + N +   +D  
Sbjct: 294 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDGN 348

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                 ++       N   +E      K    +  +                   N    
Sbjct: 349 KPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGK 408

Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                    D    N +     G T N        +  ++ + N  +D  + K   
Sbjct: 409 EDGNKPGKED---GNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 461


>gi|308478343|ref|XP_003101383.1| hypothetical protein CRE_13540 [Caenorhabditis remanei]
 gi|308263284|gb|EFP07237.1| hypothetical protein CRE_13540 [Caenorhabditis remanei]
          Length = 979

 Score = 37.3 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/144 (7%), Positives = 29/144 (20%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
              +      +    P      +   QD+   P     +    +                
Sbjct: 259 RQEDEAGPSDNQRSLPVRRTPAKRGRQDDETGPSGTQNTPRVRRTPAKRGRQNDEAGPSD 318

Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692
            RR +  P              +       +     + +  T  N  +      +     
Sbjct: 319 SRRPQNNPRQRTPKTPKNPRTPNTPKTPRTARSQKSQRTPNTPKNQNKWKGPRTSGKPRT 378

Query: 693 SIPPVSTPEMESSNSSSDPIVKKT 716
              P +  + + +    +     T
Sbjct: 379 PNTPKTRRKQKWTKGMKNKKTGTT 402


>gi|302917950|ref|XP_003052551.1| hypothetical protein NECHADRAFT_2224 [Nectria haematococca mpVI
           77-13-4]
 gi|256733491|gb|EEU46838.1| hypothetical protein NECHADRAFT_2224 [Nectria haematococca mpVI
           77-13-4]
          Length = 592

 Score = 37.3 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 36/155 (23%), Gaps = 8/155 (5%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            +         T  +  S    P    + +   ++ +     K       Q     +E  
Sbjct: 294 TRSHTNVKRQRTSSRSASPPAQPVEATSRDESDEESSTRSGAKKARNNKTQKAKTEKEDK 353

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R+    +R+ R      +    SD +    V   +      P               
Sbjct: 354 ERQRQEAADKRKGRAERRRGEDSDPSDETPAPPVKPPAAKSIETPIVTE--------TPA 405

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                    PP S P   +++        K    +
Sbjct: 406 PPVQPVPDTPPASHPPTTNTHKRGGRNTHKKGKGR 440


>gi|258565933|ref|XP_002583711.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907412|gb|EEP81813.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1036

 Score = 37.3 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 41/162 (25%), Gaps = 9/162 (5%)

Query: 570  PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629
              +       +   D  A    +  E   +  A       E     ++    E S     
Sbjct: 870  AEEKAAREEQRRKLDETAALQRQREEEAEKRRAARKTGVPEPRAPAREAAPREASPERTA 929

Query: 630  KRRRRRRRRRPA-TDHHDAGVVSDVSSIQNVI---DDSFDMYMEPSDITNHNLLENGAHG 685
             R     R  P+  D  +AG  ++  S    +     S   Y+ P         +    G
Sbjct: 930  PRLNLAGRTGPSWRDKREAGAATERPSSTQDVPPAQPSKGSYLAPHLRAREASSDRRDFG 989

Query: 686  FTENYDVSIPPVSTPEMESSNSSSD-----PIVKKTRWWKRR 722
                 D   PP          SSS          +   W+ R
Sbjct: 990  RARGGDAPPPPRPMTRSPVPPSSSPAPQEGREEPRPGVWRPR 1031


>gi|329120395|ref|ZP_08249062.1| translation initiation factor IF2 [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462350|gb|EGF08676.1| translation initiation factor IF2 [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 949

 Score = 37.3 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 34/151 (22%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            +E+            +   ++ A    K  E      +      + +    +    S  
Sbjct: 233 KLERAERQARREAAKKQAQEEALAAKAGKAGENRSAKPSEQKPLAAAAQPSSKTADTSAN 292

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
           +       R++  RR    D   +              ++     E              
Sbjct: 293 AANPSGGSRKKDDRRNSRDDEGQSRNAKGKGGKGGRDRNAGRGDDERVRGGKKGKKLKLE 352

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                    + P V    +  + + +D   K
Sbjct: 353 PNQHAFQAPTEPVVHEVLVPETITVADLAHK 383


>gi|324501842|gb|ADY40816.1| Pre-mRNA-splicing factor CWC22 [Ascaris suum]
          Length = 631

 Score = 37.3 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 2/163 (1%)

Query: 539 IVEYEARFGVSIN--VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596
           +VE+  +   SI   V            I       +      +          ++  E 
Sbjct: 3   VVEFRCKHKKSIREVVRGEGRRRHSKDEISGEDQRSSEDEGRMEKQRKGHRGHRERRREE 62

Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656
              ++      +         +    +  G   K RR+R R        +    ++ S  
Sbjct: 63  GEDEKRDSGHGRRREESRRSSSGERRQCDGDREKSRRKRNRDEKRNKRSNEERNNERSPS 122

Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699
               + +     E  D   HN          +   VS      
Sbjct: 123 PKRKERTEKRRTEEFDEGAHNKASPKMDNAEKVEQVSKEKKEP 165


>gi|85084961|ref|XP_957412.1| hypothetical protein NCU07187 [Neurospora crassa OR74A]
 gi|28918503|gb|EAA28176.1| predicted protein [Neurospora crassa OR74A]
 gi|28950228|emb|CAD71095.1| hypothetical protein [Neurospora crassa]
          Length = 1560

 Score = 37.3 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 46/193 (23%), Gaps = 14/193 (7%)

Query: 540  VEYEARFGVSINVVIGIELADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECV 597
               E++  V              F I+ G+                       +      
Sbjct: 1215 AYLESQHSVRSGRQPD-----PEFSIDLGNNQILDQSEPEEEDDVPMPGRDYEEDVSMPG 1269

Query: 598  WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVS 654
               E       SE   D  D     + T    +++            +D   +   S  S
Sbjct: 1270 SNHEEDNEENDSEEDHDEGDQEEESQQTTPRPQKQASLSEEPASPALSDLSASSNDSFPS 1329

Query: 655  SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT--ENYDVSIPPVSTPEMESSNSSSDPI 712
              Q     S     +P   T  + +   +      +  ++          E  +S     
Sbjct: 1330 LSQTTTKSSQRKASQPPKSTPRDPIPTTSKTRKSLDAVNLDYEQAMKRLDEEESSQESTT 1389

Query: 713  VKKT--RWWKRRK 723
            +  T  +  KRR+
Sbjct: 1390 MDDTQLKVEKRRQ 1402


>gi|257875275|ref|ZP_05654928.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257809441|gb|EEV38261.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 349

 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 7/142 (4%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +    +   +T      +       +      +     P  K  + +        + ++ 
Sbjct: 22  REKKREQPEDTPRNPRIEKFQAQGKQASPSSGKKRPKKPPQKEPTGQAPAKKKRKKAAST 81

Query: 627 VIRKR-------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
             R +         +++ R  A+   +A         Q       +   +    +N N  
Sbjct: 82  ANRPKLPTEKQHPSKQKERAAASTTSEAPRKKKKRPPQQARPSQRNEPGKTKKSSNPNAK 141

Query: 680 ENGAHGFTENYDVSIPPVSTPE 701
             G H   +          TP+
Sbjct: 142 SKGTHKQGKKPAEVSQKRPTPQ 163


>gi|221484158|gb|EEE22454.1| hypothetical protein TGGT1_031250 [Toxoplasma gondii GT1]
          Length = 296

 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/148 (8%), Positives = 30/148 (20%)

Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
            I+K   V+A  +        ++     +           +   + E+ E         +
Sbjct: 31  RIDKEERVEATEHNRATSAEAARRVFTRQPGRNAHTHSQPVHGLQREARERGGKTKKGIK 90

Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
                R++  RR          +          +  I +         D       E   
Sbjct: 91  RKNQPRRKPERRGGGEKEDREREGERNQGERKRRESIQEERGSGEARRDKQGERRQEKQK 150

Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDP 711
              +             +        + 
Sbjct: 151 GKASSESAKGRKKRENDKRRKQKGKGEE 178


>gi|171685884|ref|XP_001907883.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942903|emb|CAP68556.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1043

 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 8/74 (10%), Positives = 20/74 (27%)

Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677
           N  + +      K+  ++  R+        G      + QN    + D      +    +
Sbjct: 431 NKDARKDEKQEGKKEDKKDERQEGKKDDKKGDRGKQDNPQNNKKAAGDSSGTSQNQNKSD 490

Query: 678 LLENGAHGFTENYD 691
             +      + N  
Sbjct: 491 QQKPDGGNQSSNNA 504


>gi|148685340|gb|EDL17287.1| retinoblastoma binding protein 6, isoform CRA_e [Mus musculus]
          Length = 1646

 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%)

Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
           I     D LF +        + +      S +     DK+     + +      K +S  
Sbjct: 823 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 882

Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
                  +        + +    R + P ++        + + I +V   S     E   
Sbjct: 883 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 942

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715
            T        A    E        V      +++S    S D   KK
Sbjct: 943 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 989


>gi|298693377|gb|ADI96599.1| Protein A [Staphylococcus aureus subsp. aureus ED133]
          Length = 524

 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 39/177 (22%), Gaps = 2/177 (1%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     +  K    E      A            +        E   +   
Sbjct: 294 EQRNGFIQSLKDDPSV-SKEILAEAKKLNDAQAPKEEDNNKPGKEDGNKPGKEDNNKPGK 352

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                  +   +        +       +  +    +P  +  +     D +       +
Sbjct: 353 EDNNKPGKEDGNKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGN 412

Query: 663 SFDMYMEPSD-ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                        + N +     G T N        +  ++ + N  +D  + K   
Sbjct: 413 KPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 469


>gi|195385426|ref|XP_002051407.1| GJ12419 [Drosophila virilis]
 gi|194147864|gb|EDW63562.1| GJ12419 [Drosophila virilis]
          Length = 2967

 Score = 37.3 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/168 (9%), Positives = 37/168 (22%)

Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601
            E  + V +       L      IE  +  +A  +   K        + D   +     +
Sbjct: 630 IEQVYKVRLIETADEALEIVKKSIEAETTKEADESEPRKKLQTVAEKTEDIKKQNTNHAD 689

Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661
                   +     + +                +       +   A  V+ +S       
Sbjct: 690 KEEEPKPIKEATAAEKHAEPAAEPAKETLENNTKTAANEQAEPQQATAVAIISESVEPAA 749

Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
           +  ++             E  A               T + E  ++S 
Sbjct: 750 NGANIVEADVTAAVAAAAEIPASEPVAECGHDKKLTQTVQNELPSTSK 797


>gi|309360373|emb|CAP31400.2| CBR-TAG-214 protein [Caenorhabditis briggsae AF16]
          Length = 1234

 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 39/150 (26%), Gaps = 2/150 (1%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +G   Q   N   K    S+    +++     +D+           +  ++    +E   
Sbjct: 906  RGERNQKENNNDSKDHHRSKDLKKERDDGSESRDKKYQDKKAGTERKHEKERRYIDEQDK 965

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
               K R+R R             +      ++   D      +P +  +    E      
Sbjct: 966  K--KERKRDRNADEYDSDAPQVKIKREEKNKDDQQDRDRKKEDPENGKDWRRKERDREVK 1023

Query: 687  TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
             + +D         + E          ++ 
Sbjct: 1024 DKKHDKYKEKEREDDNEKVKQREKEKERQK 1053


>gi|219525743|gb|ACL15290.1| p200 [Babesia bovis]
          Length = 611

 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/149 (6%), Positives = 31/149 (20%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +            +     Q    ++  +    +            ++ +     +E+  
Sbjct: 167 RQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEA 226

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
             +++     R+R   +       ++    +   +       E                 
Sbjct: 227 ERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEEAEAERKRQEEAEAERKR 286

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715
            E  +         E E          +K
Sbjct: 287 QEEAEAERKRQEEAEAEKKRQEEAEAERK 315


>gi|194898519|ref|XP_001978826.1| GG11565 [Drosophila erecta]
 gi|229488242|sp|B3P211|EIF3A_DROER RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10
 gi|190650529|gb|EDV47784.1| GG11565 [Drosophila erecta]
          Length = 1135

 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 26/144 (18%), Gaps = 8/144 (5%)

Query: 555 GIELADKLFYIEKGSPVQ--------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606
             E     +  ++    +                     +             D    P 
Sbjct: 846 DDEKRRAQYEKQRAKEEEAERKIKEDRERLARDLASERERTEKERDTWRPRGGDRPSAPA 905

Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666
             S                G  R  R   R  R        G            D S+ +
Sbjct: 906 VGSGEWRRAAPTASERNERGGERIERGGDRIERGGERIERGGDRDRDRKDNEGADSSWRV 965

Query: 667 YMEPSDITNHNLLENGAHGFTENY 690
             EP         ++ A    ++ 
Sbjct: 966 RREPDSQRAAAPKDSNAQQSRDDK 989


>gi|74184387|dbj|BAE25723.1| unnamed protein product [Mus musculus]
          Length = 999

 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 26/118 (22%), Gaps = 2/118 (1%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              ++ GSP +       K   DS++ +           +        E   +      +
Sbjct: 21  HLKVQSGSPKEEKKLREKKAHKDSESAA--PEYREHKSRDPDREARHKEKTAERDLYTST 78

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
           E   G   + R + RR+       D                         D       
Sbjct: 79  EHPRGERDRERHKERRKDAKDREKDKLKERHRDQEAEKAHSRGKDREREKDRRARKEE 136


>gi|46125725|ref|XP_387416.1| hypothetical protein FG07240.1 [Gibberella zeae PH-1]
          Length = 1548

 Score = 37.3 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 39/139 (28%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628
                +     K    ++A   D++ + +             S+   + +   ++ + + 
Sbjct: 860 HDKNRVEKLSEKYHDRTKALKRDESRDRLSVSGDGSAKRHRASITPDRPSNGDKDDSELP 919

Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688
            KRRR     +                  N  D S  +        + +  E  A+    
Sbjct: 920 PKRRRLEGETKEKRPKQALSSDERPRKPNNAQDSSKPVAKSIQKKHDDDKRERRANSHRA 979

Query: 689 NYDVSIPPVSTPEMESSNS 707
           + D +        ++S  +
Sbjct: 980 DTDRASSAERQIHVKSEET 998


>gi|322786718|gb|EFZ13087.1| hypothetical protein SINV_01289 [Solenopsis invicta]
          Length = 1987

 Score = 37.3 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 6/163 (3%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              I   S  +             Q  +  + +E   + EA     +  + +    +   
Sbjct: 834 HTDISVASESEDSEGYESDTTEPEQTKTRLRGMEERKRKEARRAEERIRADDVTVSDGED 893

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-- 679
           E+      ++ RR RR    +    +   SD        D   +         +  +   
Sbjct: 894 EKDISDEPRKGRRLRRTPGKSQGIKSEPDSDQEEQPKGRDFDLNQIRSELKGFDKAVKME 953

Query: 680 ----ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
               E       ++ + +    ++P++E +N S    V +T+ 
Sbjct: 954 IVRMEPEDEVKLDDKENTAAITTSPKLEKTNESPKVEVVETKV 996


>gi|302653540|ref|XP_003018594.1| PE repeat family protein [Trichophyton verrucosum HKI 0517]
 gi|291182251|gb|EFE37949.1| PE repeat family protein [Trichophyton verrucosum HKI 0517]
          Length = 701

 Score = 37.3 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 42/157 (26%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           EK            K  +  + P+ +   +          +   +        +V E+  
Sbjct: 212 EKPQDDSPPAEDVVKEAAPPEQPAAEPVAKEEPVSSPTEELKTIKEPTPQPAPVVEEKPA 271

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
             I++    +    P ++   +  + +  +      +         +  + +  +  +  
Sbjct: 272 EEIKEEPVPQAVEAPVSEDTASKPIIEEPAAVEDAPNHKAAEEAAVESKSKSRSKERSKE 331

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            ++         S P  E    S     KK    + R
Sbjct: 332 RSKEKRHKKHRRSAPAEEPPRPSKSSGEKKPSSRRPR 368


>gi|198429639|ref|XP_002120578.1| PREDICTED: similar to KPL2 [Ciona intestinalis]
          Length = 1769

 Score = 37.3 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 36/184 (19%), Gaps = 14/184 (7%)

Query: 549 SINVVIGIELADKL--FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD------ 600
            I  V       +     I         +   +   +  Q    +   + V+        
Sbjct: 746 QIKNVQDPAFEHEQVQHRITSFHSNWEKMEKLYSEITTVQHVDAEAAKDTVYAQLEKTVF 805

Query: 601 ------EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654
                 +       +  L D     + +E     R    R                   +
Sbjct: 806 STLNKIQEKSEEEFAAELSDKLSEEIPKEEVKPQRSDLLRPDSASSRKSKDSIRSARSKT 865

Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714
                         E SD  + +   +      +    + PP    E       + P   
Sbjct: 866 KSGKGSARDRKKSGEKSDKKSRSRSASSKSSKDKRKSATPPPAPVAEAVEPEEVNKPKPG 925

Query: 715 KTRW 718
              W
Sbjct: 926 DQGW 929


>gi|149025112|gb|EDL81479.1| similar to transcriptional regulating protein 132 (predicted)
           [Rattus norvegicus]
          Length = 1003

 Score = 37.3 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 39/169 (23%), Gaps = 7/169 (4%)

Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALL 604
           +   + +     L             Q  V    K           +      +  E   
Sbjct: 780 YKKQVKIGRNGTLTFGDLDTGAEKSGQEEVEVDVKTSQKFPRVLPPRRESPSEERLEPKR 839

Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDS 663
            + + +   + +     E+      + R RR     AT       +    +  +V I  S
Sbjct: 840 EMKEPKKEGEEEVPDTQEKGEQEEGRERSRRAAAVKATQ-----TLQPTEAANDVLILRS 894

Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
            +     S     +       G +            PE  +   + +  
Sbjct: 895 HEPNAPGSASVQTSEKPREGPGKSRRALPFTEKKKKPEAFNKTQNQENT 943


>gi|113199781|ref|NP_666151.3| WD repeat-containing protein 60 [Mus musculus]
 gi|81914087|sp|Q8C761|WDR60_MOUSE RecName: Full=WD repeat-containing protein 60
 gi|26342709|dbj|BAC35011.1| unnamed protein product [Mus musculus]
          Length = 999

 Score = 37.3 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 26/118 (22%), Gaps = 2/118 (1%)

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              ++ GSP +       K   DS++ +           +        E   +      +
Sbjct: 21  HLKVQSGSPKEEKKLREKKAHKDSESAA--PEYREHKSRDPDREARHKEKTAERDLYTST 78

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679
           E   G   + R + RR+       D                         D       
Sbjct: 79  EHPRGERDRERHKERRKDAKDREKDKLKERHRDQEAEKAHSRGKDREREKDRRARKEE 136


>gi|321262561|ref|XP_003195999.1| histone deacetylation-related protein [Cryptococcus gattii WM276]
 gi|317462474|gb|ADV24212.1| histone deacetylation-related protein, putative [Cryptococcus
           gattii WM276]
          Length = 852

 Score = 37.3 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/112 (7%), Positives = 23/112 (20%), Gaps = 8/112 (7%)

Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673
                    E+     ++R R       +D  D    +                    + 
Sbjct: 230 KKPGPTAQAEARKEKPRKRAR------MSDAEDDEKDARDEKDARADSKPPKKKERERET 283

Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT--RWWKRRK 723
                 +       +      P     +++  N  +  +  +     W   +
Sbjct: 284 RKVPSSQASRATSPDKSRRPSPRSKDKDVKLQNGVASAVEGRDEIGVWTEHR 335


>gi|302927727|ref|XP_003054558.1| hypothetical protein NECHADRAFT_31703 [Nectria haematococca mpVI
           77-13-4]
 gi|256735499|gb|EEU48845.1| hypothetical protein NECHADRAFT_31703 [Nectria haematococca mpVI
           77-13-4]
          Length = 650

 Score = 37.3 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 51/188 (27%), Gaps = 4/188 (2%)

Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
             +   +   +   E R+   +      E ++    I +        +       D +  
Sbjct: 412 DDMDEDENKDVRMTEHRWDKQVEHEGEFEPSEDDDEIARAHGATRQNSNKRTFT-DYRKG 470

Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648
             + +   V          +  + ++  D            ++  + +  + A    +  
Sbjct: 471 EMEVDSGNVTPKAPNGASVEEPAGDETHDINDDTIEDMSAHEQPEKDQPEKEAEKPEETA 530

Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708
             ++ +S+ N  D          D T     +       E    +  P    + ES+   
Sbjct: 531 KETEKTSVDNDGDVGMTDSAPAEDTTTIKKEDVEPETTAEPAAPAEKP---TQEESTTKE 587

Query: 709 SDPIVKKT 716
           +    K+T
Sbjct: 588 APEATKET 595


>gi|255727318|ref|XP_002548585.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134509|gb|EER34064.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 773

 Score = 37.3 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 50/180 (27%), Gaps = 7/180 (3%)

Query: 533 NQKRATIVEYEARFGVSINVV----IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588
           N+K    ++ E +    + V+       +        E+       V+   K    + + 
Sbjct: 381 NEKDPDSIDIEKKESAEVIVLDEEATDEQKDHAEEIKEEVKESTTSVDESEKQDVATNSE 440

Query: 589 SYDKN---IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645
           S D      + +  D+           ++   N    E T  +  ++    +     +  
Sbjct: 441 SVDSELKVEKNISTDDISTETVSMNESKNESKNESKNEETSPVELKQEENEQVSETNNDD 500

Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705
                 D  +  N  D   +  ++     +    ++           + P   T + ++ 
Sbjct: 501 APENEKDNINANNTPDTIIEDPIKRVKFADEVESQSSKENTPAVELKTEPKEKTEDEDAE 560


>gi|146413268|ref|XP_001482605.1| hypothetical protein PGUG_05625 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 673

 Score = 37.3 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 69/246 (28%), Gaps = 22/246 (8%)

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI--NVVIG 555
             +    R  E            + +   V    L   +      + R G     +V+  
Sbjct: 421 PNSFRDEREREIRKRIEKERESRIRSTGAVTNTKLKVNKDLAGRLQERQGDQAAESVIND 480

Query: 556 IEL----ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------- 601
                   +  F +++ S     +N       +    S          +E          
Sbjct: 481 DRFKELFENPEFAVDEQSHEYKQLNPVRSTTQNGADRSRGLTAAEESDEERMRNGELEEL 540

Query: 602 ---ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
              +       E+ ++ +     ++    +R+RR+ +       +      V+  S   N
Sbjct: 541 EDESEESDESDENEQESEKQAKVQKEMERLRQRRKAKEEADRFMN--KMSAVAQQSQSNN 598

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTR 717
              ++      P +  + + +   A G  E   V     +   +++     S+    K R
Sbjct: 599 ESFETQVKKAAPRNKNDDSRIRRHARGEAELTFVPRKKTTQKVKVQDDRPESEKGRTKQR 658

Query: 718 WWKRRK 723
           +  RR+
Sbjct: 659 FDGRRR 664


>gi|320165966|gb|EFW42865.1| phosphoprotein [Capsaspora owczarzaki ATCC 30864]
          Length = 1153

 Score = 37.3 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 2/130 (1%)

Query: 567  KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
            +G      ++       DS+     ++ +    DE+      + +    Q     +  T 
Sbjct: 967  RGRKADTAMDDFVDDEEDSRPKKGRRSKDSGSSDES--EEDAASTPSSSQGEDGGDGETA 1024

Query: 627  VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
                +  R+RRR        +   +D  S Q    D   +  EP          +   G 
Sbjct: 1025 PKASKEERKRRREARKKEKRSRDKADKKSRQKRRRDDGSLEAEPRKAAREADSSDEDKGK 1084

Query: 687  TENYDVSIPP 696
            + +    +P 
Sbjct: 1085 SSSSSSRVPK 1094


>gi|171769783|sp|A2R7P5|NST1_ASPNC RecName: Full=Stress response protein nst1
 gi|134083288|emb|CAK46843.1| unnamed protein product [Aspergillus niger]
          Length = 1201

 Score = 37.3 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 39/158 (24%), Gaps = 21/158 (13%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+    Q       +           K  +   +          E+    +     EE  
Sbjct: 536 EQTRNEQRNAKKAREAQKRKDKKKLQKQAKEEEKARREAEKAAEEAAAKAEQEKKLEEQ- 594

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              RKR  ++++R       +A  +   +  Q  + +  +   E                
Sbjct: 595 --RRKREEQKKKREAERKAQEAERLRKEAEKQKRLREERERQAEIERKQREQ-------- 644

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                          +       ++   KKT+  + RK
Sbjct: 645 ----------KELEKKRREEARQNELREKKTKDERERK 672


>gi|327467110|gb|EGF12620.1| translation initiation factor IF2 [Streptococcus sanguinis SK330]
          Length = 930

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 5/182 (2%)

Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564
           R  E           +V    ++ L + +   +   +   R   S       +   +   
Sbjct: 5   RLYEIAKELGKESKEVVARAKELGLDVKSHSSSVEADAGERIKSSFKKAAAPQATAEKPA 64

Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624
             + SP +        V ++      D   E   +  A +  P+S + +  ++    EE+
Sbjct: 65  AAQPSPQKTPAKEVAPVKAELTEAKVDAKPEAKAETAAPVKRPQSRNFKAEREARAKEEA 124

Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                 RR+++  R+P           D  +      +  D    P+D  ++   +   +
Sbjct: 125 E-----RRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRN 179

Query: 685 GF 686
           G 
Sbjct: 180 GQ 181


>gi|317009664|gb|ADU80244.1| 30S ribosomal protein S1 [Helicobacter pylori India7]
          Length = 556

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 60/246 (24%), Gaps = 12/246 (4%)

Query: 58  FVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQT----DSEAVAD 105
           FVD G +  GFL   EI  D        Y  +       ++      +       +    
Sbjct: 305 FVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNK 364

Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165
                +        LE                 +           D      +       
Sbjct: 365 PFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225
            +  I ++ K  + + +                + + +     ++     G  I+    +
Sbjct: 425 IKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGID 484

Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285
            + +       +  E+  G  +        ++  +++     L R  +     A N+   
Sbjct: 485 VLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSSNKVRASVHRLERKKEKEELQAFNTSDD 544

Query: 286 HLVYEE 291
            +   +
Sbjct: 545 KMTLGD 550


>gi|315042241|ref|XP_003170497.1| peroxin 26 [Arthroderma gypseum CBS 118893]
 gi|311345531|gb|EFR04734.1| peroxin 26 [Arthroderma gypseum CBS 118893]
          Length = 454

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 4/152 (2%)

Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632
                 +     + + + D + +  +       I + E        I  E+   + R+R+
Sbjct: 226 RNEEWEYAREFINLSEALDDDRKEAFIQTLDNLIEEKEKGAQRAAEIQQEKEEELERQRK 285

Query: 633 RRR--RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690
           +R    R+R   +             Q  +          S       +E          
Sbjct: 286 QREDEERQRAEEEKKKQEREQKQKQQQESLGGKSTSNHARSSSEVDYGIEKSNPSSPMKS 345

Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            V  P +   +    +S+     KK    K R
Sbjct: 346 RVVKPALKKTQPSEPSSAKQ--TKKNTTGKPR 375


>gi|307191643|gb|EFN75123.1| hypothetical protein EAI_04834 [Harpegnathos saltator]
          Length = 2879

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 9/168 (5%)

Query: 564  YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623
             I+K     +  +       ++     D +     +  +        +L           
Sbjct: 1910 SIKKLLEDDSDESNEDSSKEETSKEIEDHSSSASQKSLSSSRGISRGTLVPEDITQPPRR 1969

Query: 624  STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683
             +    +RRRR+  +  ++   D+  +    + + V     ++    S      +  +  
Sbjct: 1970 KSDGETRRRRRKYDKNVSSSQFDSKKLKSKQTDEEVRGK-DNINSTASGSQAGTVARSQL 2028

Query: 684  HGFTENYDVSIPPVST--------PEMESSNSSSDPIVKKTRWWKRRK 723
            +  T+      PP+          P    +NS+  P+   T   +RRK
Sbjct: 2029 YDTTKKASSPAPPLRKKRRRVTTYPRTPRNNSTISPVQSSTNAKRRRK 2076


>gi|296453429|ref|YP_003660572.1| transcription termination factor Rho [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182860|gb|ADG99741.1| transcription termination factor Rho [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 689

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 38/151 (25%), Gaps = 2/151 (1%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +               SD+   +   N +   Q  A  P      L+         +   
Sbjct: 55  RAPKAAKTAKVVKAPQSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDE 114

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686
              +R RR+     A++   A    D                E  D+     L+ G    
Sbjct: 115 TEPRRTRRKAADDAASEPRAARHRRDDDQSDFARRKPRKKADEAGDLL--ATLDLGDAAP 172

Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
           TE        V  P +       D   ++ R
Sbjct: 173 TERRRERHEDVEVPLIRRVRDDEDEQPRRRR 203


>gi|212541847|ref|XP_002151078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium
           marneffei ATCC 18224]
 gi|210065985|gb|EEA20078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium
           marneffei ATCC 18224]
          Length = 764

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 31/138 (22%), Gaps = 3/138 (2%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG- 626
           G+         + V SD  A   D     V     +         E+       EE    
Sbjct: 607 GASKTNGATANNGVKSDKSASEADDTDAEVIDKTPITDENGVAVGEEAFGPFDEEEDAEL 666

Query: 627 --VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684
                + R RR+   P           +    Q  I  S     +PS     +L +    
Sbjct: 667 IARAERNRLRRKGINPKAVLDKKAKRDEKKPKQEDIAASSASEKDPSAGEEESLDKKKKG 726

Query: 685 GFTENYDVSIPPVSTPEM 702
              E              
Sbjct: 727 SKKEKKPAETETREEKPS 744


>gi|198413907|ref|XP_002124378.1| PREDICTED: hypothetical protein [Ciona intestinalis]
          Length = 1300

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/155 (6%), Positives = 33/155 (21%), Gaps = 4/155 (2%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E+    + + +   +     +    D   +    D     + K        D+  + E  
Sbjct: 43  ERKRTNEEVRHHDRRKERQEKPHHGDNERKKQNSDRQESSLEKERKERRKNDHDKTSERD 102

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
                   R + R   T        +      +          +           + +  
Sbjct: 103 KRRH----RDKSRDDVTKRRSRHRRTSSRGSTSSDHKELKEKNKQEGKRERKQRSDKSSS 158

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720
                + +            +  +   ++ +R   
Sbjct: 159 RKVGKEGNRKKKEKETNSQRSEPNFTTIQNSRVGD 193


>gi|195449101|ref|XP_002071933.1| GK23613 [Drosophila willistoni]
 gi|194168018|gb|EDW82919.1| GK23613 [Drosophila willistoni]
          Length = 1190

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 65/636 (10%), Positives = 191/636 (30%), Gaps = 24/636 (3%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
            D + +       +  ++A +               +E++    +  +            
Sbjct: 184 CDPEKIEAIQKKIKKLADAKSISPADVIDLNDLQKFIEDMVKAHDILKAENAILRRLIEK 243

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
                  +     PE        Q  I  + K   +L     K+ +  K  A     +L 
Sbjct: 244 QSKRCTMESLIIDPEKNNDIPFLQNKIDSLSKELNMLRKAEDKQLKSTKLGAHVGDYNLD 303

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
                +    +  + I++ I      +   E    LE+     +  +   A     ++ R
Sbjct: 304 SNADTVFSKDTGLDNINKIIAERNALRKKIEALSDLEIKVNE-LQQKANLAEGVSDDLSR 362

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           +     +  +++          +    + +    A     C D+ + +++ +   + A+ 
Sbjct: 363 NLNEQDQYINDMENEIQEMQKYYESEVDKSKCNEAFLKCRCDDMRQQLMTAKCAAQRAEC 422

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
            +  +      + ++    +    +    + +      + T+     V      +    D
Sbjct: 423 QVMEIDVLRGELRKRDNALNAYDCQYQQLMNIVCDLNKKFTIRPSNCV----GSSFECPD 478

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           V    +       D  +      A +  +Q+ LR   G   +  +D   ++       +L
Sbjct: 479 VGDDLAVYTGATLDHIMNELCNQA-DCFKQINLRKSPGAPHISSLDDCSRE-----LDRL 532

Query: 444 KES-LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           K+   +KD    ++   +     + +    R  + E   KV    +   ++      ++ 
Sbjct: 533 KDMIFQKDGQLDKLIEDNECLCQDAADNNNR--LSELDRKVQQLDEDTKFMEDGMRESIG 590

Query: 503 ILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           +++ +     +  +  + + +        LL   +  +   E +  + +   I  +L+D 
Sbjct: 591 LIQDIGHVAKENDSLKDQLNNFKVTEANKLLKSYQDQLE--ECQLKMHMLQEINKKLSD- 647

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              ++        +        + +     ++ +     +  L  P  +   +I+  +  
Sbjct: 648 --ALDNIGGDPKSIQKEFDERENLRKVDEKRHKQWGKIQDEDLRSPYLQDTTEIKKEVEL 705

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              +   R+      RR   T+  ++   S V+   N+     +M  E  ++     +  
Sbjct: 706 GNKSEERRRDGPGENRRLEKTEQDESKEQSGVTPKDNIR----EMSEEERELGLKQKVRP 761

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +   E   ++       ++E   +      +K R
Sbjct: 762 DTNEKHEPKPIAKLDNVPEKLEKDTTDIPKETQKNR 797


>gi|190348966|gb|EDK41527.2| hypothetical protein PGUG_05625 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 673

 Score = 37.3 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 69/246 (28%), Gaps = 22/246 (8%)

Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI--NVVIG 555
             +    R  E            + +   V    L   +      + R G     +V+  
Sbjct: 421 PNSFRDEREREIRKRIEKERESRIRSTGAVTNTKLKVNKDLAGRLQERQGDQAAESVIND 480

Query: 556 IEL----ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------- 601
                   +  F +++ S     +N       +    S          +E          
Sbjct: 481 DRFKELFENPEFAVDEQSHEYKQLNPVRSTTQNGADRSRGLTAAEESDEERMRNGESEES 540

Query: 602 ---ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658
              +       E+ ++ +     ++    +R+RR+ +       +      V+  S   N
Sbjct: 541 EDESEESDESDENEQESEKQAKVQKEMERLRQRRKAKEEADRFMN--KMSAVAQQSQSNN 598

Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTR 717
              ++      P +  + + +   A G  E   V     +   +++     S+    K R
Sbjct: 599 ESFETQVKKAAPRNKNDDSRIRRHARGEAELTFVPRKKTTQKVKVQDDRPESEKGRTKQR 658

Query: 718 WWKRRK 723
           +  RR+
Sbjct: 659 FDGRRR 664


>gi|315504335|ref|YP_004083222.1| hypothetical protein ML5_3557 [Micromonospora sp. L5]
 gi|315410954|gb|ADU09071.1| hypothetical protein ML5_3557 [Micromonospora sp. L5]
          Length = 566

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 19/179 (10%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++ VV       +           A  +   +     +AP+  ++     + E ++   
Sbjct: 298 FAVPVVPEPGSLREPVRAAAARRRDAEPDAPARRARTQEAPARRRD----EEREPVVRAR 353

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
             E+    + +           + R  RR R        +    D+ +  +   +S   +
Sbjct: 354 DEEAAPARRTDGERPRRRRRDDEERVTRRSRNEERVSRRSRDDEDLVARYSAPPESGGRH 413

Query: 668 MEPSDITNHNLLENGAHGFTENYDV---SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             P D    +     +  +    +V   S PP +T E E              W   R+
Sbjct: 414 SAPPDTGGRHSAPPDSSRYATAAEVARYSAPPRATDEPEEP------------WDSPRR 460


>gi|331232673|ref|XP_003328998.1| hypothetical protein PGTG_10738 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309307988|gb|EFP84579.1| hypothetical protein PGTG_10738 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 432

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 36/152 (23%), Gaps = 5/152 (3%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
           E   P +A           S+AP           +       K       +    SE+  
Sbjct: 94  EASPPKEAAKPPAAPPKEASKAPEAPPKEAAKPPEAPPKEAAKPPEALPKEAAKPSED-- 151

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
               ++   +    P  +      +    +         +    P D       +    G
Sbjct: 152 ---PQKEAAKPSEDPPKEAEPHQKLGRPPNQPTRNLQKLEDSKPPEDAPPKEGGKLPEAG 208

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                    P  +TP  E+S +   P  K   
Sbjct: 209 AASEPADKKPAETTPPKEASKTPEAPPSKDAG 240


>gi|261193948|ref|XP_002623379.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239588393|gb|EEQ71036.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
          Length = 457

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 31/116 (26%)

Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626
           +   +    N      S S   +  +        E      K      I D     +   
Sbjct: 39  RRPALPRPENVPPSRPSLSDDKASSRRPARRPSKEESQSRSKGHGRPPIGDIFADPKEPS 98

Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
             R +RR RR    +     +  +   +  +       +   +P D  + +   NG
Sbjct: 99  KSRNQRRPRRNSDSSLMDIPSRPIDPEAERRRRERRQRERDAKPKDGKSRSKRSNG 154


>gi|226226159|ref|YP_002760265.1| hypothetical protein GAU_0753 [Gemmatimonas aurantiaca T-27]
 gi|226089350|dbj|BAH37795.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 698

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 32/135 (23%)

Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636
              +    +     ++  E   +  A     +  S  D      +E +     +R  R  
Sbjct: 324 AESRANERAPERGAERGAERGAERSAERAAGERSSRRDRSSEQTTERTADRAPERSGRPE 383

Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696
           R   ++              +   + S       ++           H   +  +   P 
Sbjct: 384 RGESSSPRERPSRPERPDRARVRAEQSEGASDGAAENVREPRQARARHSEEQTSESRRPR 443

Query: 697 VSTPEMESSNSSSDP 711
                 E   ++ D 
Sbjct: 444 REGVRDEPLRAALDD 458


>gi|238494130|ref|XP_002378301.1| transcription factor TFIIIB component, putative [Aspergillus flavus
           NRRL3357]
 gi|220694951|gb|EED51294.1| transcription factor TFIIIB component, putative [Aspergillus flavus
           NRRL3357]
          Length = 572

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 14/159 (8%)

Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627
            S               +   S +   +   +D A +  P+       ++  +  E+   
Sbjct: 118 FSAFTLSQPPNATPAEPTPLLSIEVAPDESGEDRARVEEPQLSETLVNEEPSLVAETPAE 177

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            R  +R++    PAT   ++  ++              +   P+  T+ N     +   T
Sbjct: 178 ARPSKRQKTNAEPATPALESQRLTGP----------PQLATPPATQTSTNEETTESRDTT 227

Query: 688 ENYDVSIPPVSTPEMESSNSSSD----PIVKKTRWWKRR 722
           E+   +     T +      S D        +TR  K R
Sbjct: 228 ESQPPAEQNRKTTKSRKRKPSKDVNGGDTTTRTRERKPR 266


>gi|190608802|gb|ACE79732.1| coiled-coil Y protein [Drosophila willistoni]
          Length = 1198

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 65/636 (10%), Positives = 191/636 (30%), Gaps = 24/636 (3%)

Query: 84  SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143
            D + +       +  ++A +               +E++    +  +            
Sbjct: 184 CDPEKIEAIQKKIKKLADAKSISPADVIDLNDLQKFIEDMVKAHDILKAENAILRRLIEK 243

Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203
                  +     PE        Q  I  + K   +L     K+ +  K  A     +L 
Sbjct: 244 QSKRCTMESLIIDPEKNNDIPFLQNKIDSLSKELNMLRKAEDKQLKSTKLGAHVGDYNLD 303

Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263
                +    +  + I++ I      +   E    LE+     +  +   A     ++ R
Sbjct: 304 SNADTVFSKDTGLDNINKIIAERNALRKKIEALSDLEIKVNE-LQQKANLAEGVSDDLSR 362

Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323
           +     +  +++          +    + +    A     C D+ + +++ +   + A+ 
Sbjct: 363 NLNEQDQYINDMENEIQEMQKYYESEVDKSKCNEAFLKCRCDDMRQQLMTAKCAAQRAEC 422

Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383
            +  +      + ++    +    +    + +      + T+     V      +    D
Sbjct: 423 QVMEIDVLRGELRKRDNALNAYDCQYQQLMNIVCDLNKKFTIRPSNCV----GSSFECPD 478

Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443
           V    +       D  +      A +  +Q+ LR   G   +  +D   ++       +L
Sbjct: 479 VGDDLAVYTGATLDHIMNELCNQA-DCFKQINLRKSPGAPHISSLDDCSRE-----LDRL 532

Query: 444 KES-LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
           K+   +KD    ++   +     + +    R  + E   KV    +   ++      ++ 
Sbjct: 533 KDMIFQKDGQLDKLIEDNECLCQDAADNNNR--LSELDRKVQQLDEDTKFMEDGMRESIG 590

Query: 503 ILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561
           +++ +     +  +  + + +        LL   +  +   E +  + +   I  +L+D 
Sbjct: 591 LIQDIGHVAKENDSLKDQLNNFKVTEANKLLKSYQDQLE--ECQLKMHMLQEINKKLSD- 647

Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621
              ++        +        + +     ++ +     +  L  P  +   +I+  +  
Sbjct: 648 --ALDNIGGDPKSIQKEFDERENLRKVDEKRHKQWGKIQDEDLRSPYLQDTTEIKKEVEL 705

Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681
              +   R+      RR   T+  ++   S V+   N+     +M  E  ++     +  
Sbjct: 706 GNKSEERRRDGPGENRRLEKTEQDESKEQSGVTPKDNIR----EMSEEERELGLKQKVRP 761

Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
             +   E   ++       ++E   +      +K R
Sbjct: 762 DTNEKHEPKPIAKLDNVPEKLEKDTTDIPKETQKNR 797


>gi|156082880|ref|XP_001608924.1| 200 kDa antigen p200 [Babesia bovis T2Bo]
 gi|154796174|gb|EDO05356.1| 200 kDa antigen p200 [Babesia bovis]
          Length = 1023

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/257 (6%), Positives = 58/257 (22%), Gaps = 5/257 (1%)

Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524
           LE  R+R  +       +     +                   +                
Sbjct: 428 LEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALE 487

Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584
           ++        +R      EA       +    +  +     ++   ++A       + ++
Sbjct: 488 AERKRQEAEAERKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAE 547

Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644
            +    +   +     EA     ++   E        +E+    +++     R+R   + 
Sbjct: 548 RKRQEAEAERKRQEALEAERKRQEALEAER-----KRQEAEAERKRQEAEAERKRQEAEA 602

Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704
                    +  +   +   +   +          E          +         E E+
Sbjct: 603 ERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEA 662

Query: 705 SNSSSDPIVKKTRWWKR 721
                +    + +  + 
Sbjct: 663 ERKRQEEAEAERKRQEE 679


>gi|156082103|ref|XP_001608544.1| pre-mRNA splicing factor [Plasmodium vivax SaI-1]
 gi|148801115|gb|EDL42520.1| pre-mRNA splicing factor, putative [Plasmodium vivax]
          Length = 544

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 35/144 (24%), Gaps = 1/144 (0%)

Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633
                    S  ++  Y +         +     K    ED          +      + 
Sbjct: 296 KKKKSKHDNSSDRSSEYGEKGSAKNNSRSKSGSRKRSLSEDDGSRSRKRSLSEGGGGSKD 355

Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693
           R+R      ++  +          N  + S                 N     +     S
Sbjct: 356 RKRSLSLKRENSSSNEKKGKRKRSNSSERSNYRSNSREMNKEKEDKSNDERSESRKSYKS 415

Query: 694 IPPVSTPEMESSNSSSDPIVKKTR 717
               S  E +S++    P+ K+T+
Sbjct: 416 PSNNSEKE-KSNDEKKKPVAKRTK 438


>gi|31657174|gb|AAH53573.1| CWC22 protein [Homo sapiens]
          Length = 848

 Score = 37.3 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 49/205 (23%), Gaps = 18/205 (8%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +  + E  +  +  
Sbjct: 658 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 703

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        S    D    +  +        +++R
Sbjct: 704 SEKHRDQNSRGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 763

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++         S      D S    M        ++ +  +NGA    E   
Sbjct: 764 GERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSS 823

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 824 RYSEQSRESKKNQDRRREKSPAKQK 848


>gi|301628660|ref|XP_002943468.1| PREDICTED: plectin-1, partial [Xenopus (Silurana) tropicalis]
          Length = 4391

 Score = 37.3 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 63/639 (9%), Positives = 158/639 (24%), Gaps = 81/639 (12%)

Query: 83   FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142
             + ++   +   + +   +         +    +   +EE       S E+E E   +  
Sbjct: 1669 IALKEKEAENERLRRLAEDEAYQRKLLEEQAAQHKQDIEEKILQLKQSSESELERQRTIV 1728

Query: 143  NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202
            ++ + +   ++           K      ++      L     + ++    A        
Sbjct: 1729 DETMKHRRVIEEEIRILKINFEKASAGKSDLELELNKLKNIADETQKSKVKAEQEAEKQR 1788

Query: 203  AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262
                          + + + I    +    ++ A                     + E +
Sbjct: 1789 QLALEEENRRREAEDKVKKIIAAEQEAARQRKTALEEVERLKAKAEEAKKQKELAEKEAE 1848

Query: 263  RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322
            +  +          E    +    +  +E  L++  I++    D  +      K   E  
Sbjct: 1849 KQIQLAREAAHKKIEAEEKAYFAAVQQKEQELLQTRIQEQSALDKLKEEAERAKRMAEEA 1908

Query: 323  DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382
            +  +      A + RQ  +      +   E                              
Sbjct: 1909 ERARTRAEHEAALSRQQAEEAERLKQKAEEEAQAKA------------------------ 1944

Query: 383  DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442
                         ++ A +   EA  E A + +  + A L      D E +K+ +  EK 
Sbjct: 1945 -----------QAQEEAEKIRKEAELEAAMRGQA-EQAALKQKQLADAEMEKHKKFAEKT 1992

Query: 443  LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502
            L++  +                +E    ++R  + ++  +        G ++ + + +L 
Sbjct: 1993 LRQKEQ----------------VEGELTKVRLQLEQTDHQKTILDDELGRLKEEVTDSLR 2036

Query: 503  ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562
              + VEE L +                           + E    + I +    ++    
Sbjct: 2037 QKKLVEEELFKVKI------------------------QMEELIKLKIRIEQENKML--- 2069

Query: 563  FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622
              I K                   A    +      +   L  + + E  E         
Sbjct: 2070 --ISKDKDNTQKFLAEEAEKMKQVAEEAARLSIEAQEAARLRKLAEDELSEQRALAEKML 2127

Query: 623  ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682
            +      +   R +             V     +Q   +       E ++     L E  
Sbjct: 2128 KEKMQAVQEATRLKAEAELLQKQKELAVEQAKKLQEDKELMKQQLAEETEGFQKILEEER 2187

Query: 683  AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721
                  + +     +   E+  + S ++   KK R    
Sbjct: 2188 RRQLDISTEAEHLKLQVAELSKAQSRAEEEAKKFRKQAE 2226


>gi|302869188|ref|YP_003837825.1| hypothetical protein Micau_4740 [Micromonospora aurantiaca ATCC
           27029]
 gi|302572047|gb|ADL48249.1| hypothetical protein Micau_4740 [Micromonospora aurantiaca ATCC
           27029]
          Length = 566

 Score = 37.3 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 19/179 (10%)

Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607
            ++ VV       +           A  +   +     +AP+  ++     + E ++   
Sbjct: 298 FAVPVVPEPGSLREPVRAAAARRRDAEPDAPARRARTQEAPARRRD----EEREPVVRAR 353

Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667
             E+    + +           + R  RR R        +    D+ +  +   +S   +
Sbjct: 354 DEEAAPARRTDGERPRRRRRDDEERVTRRSRNEERVSRRSRDDEDLVARYSAPPESGGRH 413

Query: 668 MEPSDITNHNLLENGAHGFTENYDV---SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
             P D    +     +  +    +V   S PP +T E E              W   R+
Sbjct: 414 SAPPDTGGRHSAPPDSSRYATAAEVARYSAPPRATDEPEEP------------WDSPRR 460


>gi|10047283|dbj|BAB13430.1| KIAA1604 protein [Homo sapiens]
          Length = 937

 Score = 37.3 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 49/205 (23%), Gaps = 18/205 (8%)

Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574
                      +V   + NQ+     + E R               +  + E  +  +  
Sbjct: 747 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 792

Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634
                   S               +D        S    D    +  +        +++R
Sbjct: 793 SEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 852

Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691
             RR   +++         S      D S    M        ++ +  +NGA    E   
Sbjct: 853 GERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSS 912

Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715
             S     + + +       P  +K
Sbjct: 913 RYSEQSRESKKNQDRRREKSPAKQK 937


>gi|85102253|ref|XP_961301.1| hypothetical protein NCU04145 [Neurospora crassa OR74A]
 gi|12718218|emb|CAC28762.1| conserved hypothetical protein [Neurospora crassa]
 gi|28922844|gb|EAA32065.1| hypothetical protein NCU04145 [Neurospora crassa OR74A]
          Length = 576

 Score = 37.3 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 29/158 (18%), Gaps = 3/158 (1%)

Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618
           +       + +             S  + P+         ++         E     +D 
Sbjct: 111 STPERASHRTTTSTREKMYFQPSRSHEEVPTARFADMNFNEERRARRATSYEKQPRPEDE 170

Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678
             S        +R   R  RR   +        +  S     D+         D+     
Sbjct: 171 RPSRREEEKAPRREDERPARR---EEEKPLRREEEKSKDKRKDEEEKKARRQRDLARELE 227

Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716
                    E            +       S      +
Sbjct: 228 EMTDPGRKAEKKKTDRERERPEKERKLEDKSRRHKGPS 265


>gi|324504333|gb|ADY41871.1| Peptidyl-prolyl cis-trans isomerase 1 [Ascaris suum]
          Length = 871

 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 41/157 (26%), Gaps = 1/157 (0%)

Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614
              +  +   +EK    +      H+   +       +  E   + + L     S S  +
Sbjct: 539 EEGVLIQETKVEKEHKNEHESPHKHRDADEEHRSESPQEDEKTHEYDTLPSKEPSSSPIE 598

Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674
            Q  +V+ +       R+ ++       D    G   D S +            +    +
Sbjct: 599 GQSKLVNTDENPEDNDRQEKKGN-EEQEDKEVEGDKKDDSGMSEEERHEIKESEDEDKRS 657

Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711
                +      +   D S+       ++      + 
Sbjct: 658 KTEKDDIAMREKSPADDRSMKGDDEKALKKKEVKDEK 694


>gi|242019382|ref|XP_002430140.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
           humanus corporis]
 gi|212515231|gb|EEB17402.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
           humanus corporis]
          Length = 902

 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 9/233 (3%)

Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL---YLLNQKRATIVE-YEARFGVS 549
           +    +   I  + +E L     H +   T +D       L   ++ T+    E      
Sbjct: 272 KENDQIVSHIDHTPQEVLTTDKQHTVDTPTENDQGKEELILHTSEQETLNSSKEPEVEKQ 331

Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609
             +     +  +   I +    +  +             S   +I+   +   ++   +S
Sbjct: 332 PELKPEDSINQE--TIIESKCDEKSILNSKNETKIEAENSVQNDIK---ETPKIIEDNES 386

Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669
           ++  + + + V E      ++   R      A +        +        +   +   +
Sbjct: 387 KTEVEEKADSVPESIPAQKKRSPSRDSSEERAKEAALLSRNKNKKKGPEKEEVEAEEGEK 446

Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722
            S   N  +  N          +S   V T E    ++  +    K+   KRR
Sbjct: 447 SSTTQNAKVENNAKAEIQNETKISTKNVVTTEKNHKDNFEENTTIKSGARKRR 499


>gi|115899370|ref|XP_800754.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115931687|ref|XP_001194172.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1717

 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 8/175 (4%)

Query: 557  ELADKLFYIEKGSPV---QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613
                  F I +  P    +  V+      S S APS D +    + +++    P S S  
Sbjct: 1404 SPESPEFIIVQDPPSLPPELPVDEIKLEPSVSAAPSEDYSEITDFTEDSTNEGPNSISRS 1463

Query: 614  DIQD-----NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668
              +           ++    ++R R   ++R   +   A  +      +    ++  +  
Sbjct: 1464 QAKAFKRAAEAEKRKAAVEKKRRDRDEAKKRAQGEAERAERIKQEYEDEKKRKEAEALER 1523

Query: 669  EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723
                +     L N          ++       + E      +   KK     +RK
Sbjct: 1524 AARAVEEREKLANQEEERKRQAALAAERERRQQAEYKRKMEEMARKKREEDMKRK 1578


>gi|281182816|ref|NP_001162587.1| hypothetical protein LOC314306 [Rattus norvegicus]
          Length = 1089

 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 39/169 (23%), Gaps = 7/169 (4%)

Query: 546  FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALL 604
            +   + +     L             Q  V    K           +      +  E   
Sbjct: 866  YKKQVKIGRNGTLTFGDLDTGAEKSGQEEVEVDVKTSQKFPRVLPPRRESPSEERLEPKR 925

Query: 605  PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDS 663
             + + +   + +     E+      + R RR     AT       +    +  +V I  S
Sbjct: 926  EMKEPKKEGEEEVPDTQEKGEQEEGRERSRRAAAVKATQ-----TLQPTEAANDVLILRS 980

Query: 664  FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712
             +     S     +       G +            PE  +   + +  
Sbjct: 981  HEPNAPGSASVQTSEKPREGPGKSRRALPFTEKKKKPEAFNKTQNQENT 1029


>gi|83682365|emb|CAJ28172.1| immunoglobulin G binding protein A precursor [Staphylococcus
           aureus]
          Length = 475

 Score = 37.3 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 43/181 (23%), Gaps = 10/181 (5%)

Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602
           E R G   ++     ++      E  +  + L +       D+  P  + N +   +D  
Sbjct: 267 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDGN 321

Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662
                 ++       N   +E      K    +  +                   N    
Sbjct: 322 KPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDNKKPGKEDGNKPGK 381

Query: 663 SFDMYMEPSDITNHNLLENG-----AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
                    D       +         G T N        +  ++ + N  +D  + K  
Sbjct: 382 EDGNKPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPG 441

Query: 718 W 718
            
Sbjct: 442 Q 442


>gi|330801236|ref|XP_003288635.1| hypothetical protein DICPUDRAFT_152902 [Dictyostelium purpureum]
 gi|325081308|gb|EGC34828.1| hypothetical protein DICPUDRAFT_152902 [Dictyostelium purpureum]
          Length = 1853

 Score = 37.3 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 44/189 (23%), Gaps = 9/189 (4%)

Query: 468  SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527
            +R        ES+ +   +  G   I S  + +    R        +   +    +    
Sbjct: 1340 NRDSSHRKDRESSHRGSDHSNGTASIVSNGNGSS---RDHHRDKDHHRESHREHRSSERE 1396

Query: 528  VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587
                 +++  +  + E R              DK    E+                    
Sbjct: 1397 HRSDRSKEHRSDRDKEHRSDRDKEHRSD---RDKEHRSEREKDQHRSDRNKEHRSG---E 1450

Query: 588  PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647
               +   +   +  +          E  Q            + + R  R +    DH + 
Sbjct: 1451 RDKEHRSDRDKEHRSDRDKEHRSEREKDQHREARTSIGEREKDQNRDHREKDQNRDHKEK 1510

Query: 648  GVVSDVSSI 656
             V   +  I
Sbjct: 1511 EVKEPIKEI 1519


>gi|195390642|ref|XP_002053977.1| GJ23047 [Drosophila virilis]
 gi|194152063|gb|EDW67497.1| GJ23047 [Drosophila virilis]
          Length = 1092

 Score = 37.3 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/157 (8%), Positives = 37/157 (23%), Gaps = 5/157 (3%)

Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612
            I  ++      I     +         +   ++    D       +  A          
Sbjct: 211 EIDHDMDTSNATIVNTEIISEDE-----LPPPTKPEINDAEEVSDEELPAPQRAELPADA 265

Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672
           E I ++ +   +        +   +R+   D ++     D    Q+  + +  +      
Sbjct: 266 EVISEDELPTHNNNNNNNESKGSGKRKAGRDANETHEKIDDEQQQSNSETNTKVKQTEQY 325

Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709
                  E+     +E            + E    S 
Sbjct: 326 NPGSPTSESNDAPPSEKRPRVDEDAEHKDKEKEKDSQ 362


>gi|50304989|ref|XP_452452.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641585|emb|CAH01303.1| KLLA0C05676p [Kluyveromyces lactis]
          Length = 511

 Score = 37.3 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 46/143 (32%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631
             L+  G  + +     S +  ++     ++    P S +    +D     ++      +
Sbjct: 142 DTLLKNGSAMSTAPATDSTNAALKINGDGDSTKIEPASSTTSSTKDQKTKGKTKEETNNK 201

Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691
             R   +   +    +   S  ++ +N  +          D  N    +  +   T    
Sbjct: 202 VPRTTAKNTKSAASKSAKNSKATTAKNKKEPVKKDSRAKQDNKNKQDNKPKSESSTPGST 261

Query: 692 VSIPPVSTPEMESSNSSSDPIVK 714
           ++    +TPE+ + N +   + +
Sbjct: 262 IATLSNNTPEVSALNETKVKLEQ 284


>gi|115495587|ref|NP_001069025.1| serine/threonine-protein kinase PRP4 homolog [Bos taurus]
 gi|122132413|sp|Q08DZ2|PRP4B_BOVIN RecName: Full=Serine/threonine-protein kinase PRP4 homolog;
           AltName: Full=PRP4 pre-mRNA-processing factor 4 homolog
 gi|115305048|gb|AAI23500.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Bos taurus]
 gi|296473980|gb|DAA16095.1| serine/threonine-protein kinase PRP4 homolog [Bos taurus]
          Length = 1008

 Score = 37.3 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 32/150 (21%), Gaps = 1/150 (0%)

Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV-SEESTGV 627
              Q  V        D          +   +   +      +  +  +  +    +S   
Sbjct: 246 RRSQEKVGKARSPVDDKAKVEDKSKAKDRKKSPVINESRSRDRGKKSRSPVDLRGKSKDR 305

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
             + + R+ +R  A             +     + S       S        +       
Sbjct: 306 RSRSKERKSKRPEADKEKKPVKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKQRDKSRR 365

Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717
               +     S      S + S     K+R
Sbjct: 366 SRSPLVNDRRSKQSKSPSRTLSPGRRAKSR 395


>gi|74004927|ref|XP_545549.2| PREDICTED: similar to CG12750-PA [Canis familiaris]
          Length = 908

 Score = 37.3 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 5/150 (3%)

Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS----ESLEDIQDNIVSEESTGV 627
           +    +      +S+ P++   I     D ++     S     +  D + +   E   G 
Sbjct: 759 ERERRSEKYKDKNSRDPNWRNPITKYTSDRSVPSERNSYSRIVNDRDQEVHTDLENKHGD 818

Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687
            +K+R  RR      +H      S+    ++               ++ +  +NGA    
Sbjct: 819 PKKKRGERRNSFSENEHRQRNKDSENVVRKDRSKSREKTRKHSGSRSDEDRYQNGAERRW 878

Query: 688 ENYDV-SIPPVSTPEMESSNSSSDPIVKKT 716
           E     S     + + +       P  +K 
Sbjct: 879 EKSSRYSTQSRESKKHQDRRREKSPTKQKK 908


>gi|313244475|emb|CBY15259.1| unnamed protein product [Oikopleura dioica]
          Length = 398

 Score = 37.3 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 39/153 (25%)

Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625
            + + +Q+  N G              + +   Q E      +S+   +      +    
Sbjct: 229 TRETNLQSQKNQGAPQSRTEDKNRRKNHNDERHQSERRQNTERSQENSNFLRRDDNPTRQ 288

Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685
              R++    +RR  +          ++ S  N   D  D   E  +  +  +       
Sbjct: 289 NNERRKSENDKRRSDSNSTKSNTPRDEIKSKMNRKRDEKDELEENVENFHEKVKNLSIKN 348

Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718
                 +               +S P  K+   
Sbjct: 349 DDREVFIKEDKNDRKRRSRPLENSSPRKKEQGT 381


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.304    0.109    0.271 

Lambda     K      H
   0.267   0.0335    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,167,197,327
Number of Sequences: 14124377
Number of extensions: 163144037
Number of successful extensions: 1243267
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 23601
Number of HSP's successfully gapped in prelim test: 17926
Number of HSP's that attempted gapping in prelim test: 977691
Number of HSP's gapped (non-prelim): 183382
length of query: 723
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 576
effective length of database: 2,766,510,211
effective search space: 1593509881536
effective search space used: 1593509881536
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 84 (37.3 bits)