BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62] (723 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62] gi|254040428|gb|ACT57224.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62] Length = 723 Score = 652 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 723/723 (100%), Positives = 723/723 (100%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL Sbjct: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL Sbjct: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE Sbjct: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR Sbjct: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ Sbjct: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA Sbjct: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST Sbjct: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV Sbjct: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD Sbjct: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI Sbjct: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK Sbjct: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 Query: 721 RRK 723 RRK Sbjct: 721 RRK 723 >gi|77462682|ref|YP_352186.1| RNAse E [Rhodobacter sphaeroides 2.4.1] gi|77387100|gb|ABA78285.1| RNAse E [Rhodobacter sphaeroides 2.4.1] Length = 936 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 346/768 (45%), Positives = 447/768 (58%), Gaps = 46/768 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--------------- 105 YGGNRHGFL F EIHPDYYQIP +DR+ALL+E + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA 120 Query: 106 -------------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139 + T D D S A +E Sbjct: 121 SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS 180 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 ++++ S ++ K R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY Sbjct: 181 DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 240 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 LSLAGRY VLMPNT++G ISRKIT DRK LKEIA LEVP G G+I+RTAGA RTK Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ 300 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 EI+RD+EYL+RLW+ +R+L L SVAP +YEEG+LIKR IRDL+ ++I E++V GE GYR Sbjct: 301 EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR 360 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 AKDFM+++MP++AR V +Y++P P+F R +E L + V L S GY++I TEAL Sbjct: 361 TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL 420 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 480 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+ Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL 540 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 AL +LR +EE + + +++ VV +L+N KR I EAR+G+++ V L+ Sbjct: 541 ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS 600 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-----DEALLPIPKSESLED 614 + IEK +V KV S S E E + + + Sbjct: 601 SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVADAAE 660 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + R+RRR +D + G D S +E + Sbjct: 661 AAPSEGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAAV 720 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E P + P + K+TR K + Sbjct: 721 PELAPEAVVSAPEPAAAEPEPTPADPVAAPAAEEPAAPRKRTRTRKPK 768 >gi|146276768|ref|YP_001166927.1| ribonuclease [Rhodobacter sphaeroides ATCC 17025] gi|145555009|gb|ABP69622.1| RNAse E [Rhodobacter sphaeroides ATCC 17025] Length = 869 Score = 519 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 358/759 (47%), Positives = 463/759 (61%), Gaps = 37/759 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVA---------------- 104 YGGNRHGFL F EIHPDYYQIP +DR+AL++E E Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRKALIEEERAYARAEEDEDHGRSRRRSRPAPAEAP 120 Query: 105 --DDVTHGDVTIPNDHSL-EEVAPIANFSQETEE---------------ESIISANNDVV 146 D V GDV + L EE A + E E + ++++ Sbjct: 121 SADAVQSGDVGGMDVVDLGEETGADALYETERGEARPEADEAEKPWKAVDHAAETDDEIE 180 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 S ++ K +R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY Sbjct: 181 SVADEDVAEEIPAPRKPRQRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRY 240 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 VLMPNT++G ISRKIT DRK LKEIA LEVP G G+I+RTAGA RTK EI+RD+E Sbjct: 241 CVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYE 300 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YL+RLW+ +REL L SVAP +YEEG+LIKR+IRDL+ ++I E++V GE GYR AKDFM+ Sbjct: 301 YLLRLWEQIRELTLKSVAPAPIYEEGDLIKRSIRDLFNREIEEVLVEGETGYRTAKDFMR 360 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 ++MP++AR V +Y++P P+F R +E L + V L S GY++I TEALV+IDVNS Sbjct: 361 MIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVNS 420 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 GR+T+E IEDTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK+LK+ Sbjct: 421 GRATKEGSIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKDK 480 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+AL +LR Sbjct: 481 LKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQVLRQ 540 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 +EE + + +++ VV +L+NQKR I EAR+G+++ V L+ + IE Sbjct: 541 LEEEGTRKRSKEVLLRAPIAVVNFLMNQKREHIAMIEARYGMAVRVEADPSLSSPDYVIE 600 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ---DEALLPIPKSESLEDIQDNIVSEE 623 K +V KV S S E +E + + E Sbjct: 601 KFKTATRVVPETVKVISGSADLMGAPVDEPEDDWIEEEPEVEEAEEAVEAAEPAEAAPSE 660 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 ++RRRRRRR G + S + D+ D + D+ Sbjct: 661 GQPKKKRRRRRRRRNGANGATDQTGAEAAESDESDDSDEDEDETADEGDVPEPAAFVPEM 720 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + PV+ P E + +P + R R+ Sbjct: 721 APEAVIAEPAAEPVAEPVAEPEAVAEEPPAPRKRTRVRK 759 >gi|126461575|ref|YP_001042689.1| ribonuclease [Rhodobacter sphaeroides ATCC 17029] gi|126103239|gb|ABN75917.1| RNAse E [Rhodobacter sphaeroides ATCC 17029] Length = 890 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 329/640 (51%), Positives = 416/640 (65%), Gaps = 41/640 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--------------- 105 YGGNRHGFL F EIHPDYYQIP +DR+ALL+E + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA 120 Query: 106 -------------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139 + T D D S A +E Sbjct: 121 SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS 180 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 ++++ S ++ K R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY Sbjct: 181 DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 240 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 LSLAGRY VLMPNT++G ISRKIT DRK LKEIA LEVP G G+I+RTAGA RTK Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ 300 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 EI+RD+EYL+RLW+ +R+L L SVAP +YEEG+LIKR IRDL+ ++I E++V GE GYR Sbjct: 301 EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR 360 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 AKDFM+++MP++AR V +Y++P P+F R +E L + V L S GY++I TEAL Sbjct: 361 TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL 420 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 480 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+ Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL 540 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 AL +LR +EE + + +++ VV +L+N KR I EAR+G+++ V L+ Sbjct: 541 ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS 600 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + IEK +V KV S S E Sbjct: 601 SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDD 640 >gi|332557565|ref|ZP_08411887.1| ribonuclease E [Rhodobacter sphaeroides WS8N] gi|332275277|gb|EGJ20592.1| ribonuclease E [Rhodobacter sphaeroides WS8N] Length = 892 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 329/640 (51%), Positives = 416/640 (65%), Gaps = 41/640 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--------------- 105 YGGNRHGFL F EIHPDYYQIP +DR+ALL+E + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA 120 Query: 106 -------------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139 + T D D S A +E Sbjct: 121 SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS 180 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 ++++ S ++ K R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY Sbjct: 181 DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 240 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 LSLAGRY VLMPNT++G ISRKIT DRK LKEIA LEVP G G+I+RTAGA RTK Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ 300 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 EI+RD+EYL+RLW+ +R+L L SVAP +YEEG+LIKR IRDL+ ++I E++V GE GYR Sbjct: 301 EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR 360 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 AKDFM+++MP++AR V +Y++P P+F R +E L + V L S GY++I TEAL Sbjct: 361 TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL 420 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 480 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+ Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL 540 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 AL +LR +EE + + +++ VV +L+N KR I EAR+G+++ V L+ Sbjct: 541 ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS 600 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + IEK +V KV S S E Sbjct: 601 SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDD 640 >gi|84517078|ref|ZP_01004434.1| Ribonuclease E [Loktanella vestfoldensis SKA53] gi|84508973|gb|EAQ05434.1| Ribonuclease E [Loktanella vestfoldensis SKA53] Length = 865 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 346/771 (44%), Positives = 457/771 (59%), Gaps = 48/771 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KMLIDA+H EETRVVV+ N+VEE DFES+ K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 4 MPKKMLIDATHAEETRVVVVDGNKVEEFDFESQFKRQLAGNIYLAKVTRVEPSLQAAFVD 63 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH----------- 109 YGGNRHGFL F EIHPDYYQIP +DR+AL+ E +A D+ Sbjct: 64 YGGNRHGFLAFAEIHPDYYQIPVADREALMAEERAYAESLKAEEDEEDAPKQPRRRTRSK 123 Query: 110 ---GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV----------------- 149 V + P+ + + +++ S+ ++V Sbjct: 124 SRAAPVEGSDAVVTSGDDPVGLETIDLDDDLEGSSPMELVGETPVETPAADEDIDDATAD 183 Query: 150 -------EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 E V K R+Y IQEVIK RQILL+Q+VKEERGNKGAA+TTYLSL Sbjct: 184 DAIESVAETDDIDDMRPVRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSL 243 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRY VLMPNT++G ISRKITN VDRK LKEIA + VP G G+I+RTAG+ RTK EIK Sbjct: 244 AGRYCVLMPNTARGGGISRKITNAVDRKKLKEIASEMTVPDGAGLIIRTAGSQRTKAEIK 303 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 RD+EYL R+W+ +REL L S+AP +YEEG+LIKR+IRDLY KDI E+IV+GE GYR AK Sbjct: 304 RDYEYLQRMWEQIRELTLKSIAPARIYEEGDLIKRSIRDLYSKDIDEVIVAGEAGYRSAK 363 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 DFM+++MPS+A+ V+ Y +P PI+ R +E L + V LPS GY++I TEALV+I Sbjct: 364 DFMRMIMPSHAKNVKFYAEPMPIYARYQVETYLAGMFNPTVQLPSGGYIVIGITEALVAI 423 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSGR+T+E IE TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+ Sbjct: 424 DVNSGRATKEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKR 483 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 K+ LK DRAR+QVG IS FGL+EMSRQR+R +LE+TT++C++C G G +RS +VALS Sbjct: 484 FKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEATTQMCSHCHGTGLLRSDDNVALS 543 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 ILR +EE ++ + ++V + +L+N KR I E EA +G+S+ V L Sbjct: 544 ILRQLEEEGVRARSKEVLVRAPIAIANFLMNGKRENIAEIEACYGMSVRVECDPVLISPD 603 Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDK------NIECVWQDEALLPIPKSESL---E 613 F +EK +V + + + D+ +++A+ P PK+ + Sbjct: 604 FVVEKFKTATRIVPEAAPIVASALLMDDDEDDDLIIETPDEDEEDAVAPTPKAAAAVLDA 663 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 D + R+RRR P + + D + + + +P Sbjct: 664 PEADGEDRPKRKRRRRRRRRTGAGDAPQAEGAEPSDAEDEALPLSEPATASATEDKPKRR 723 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK-TRWWKRRK 723 A V+ + TP + R RRK Sbjct: 724 RTRTRKSADAAPQEVVETVAEAVMDTPVAAQAAQEPAQDATPAKRIRSRRK 774 >gi|260577098|ref|ZP_05845076.1| ribonuclease, Rne/Rng family [Rhodobacter sp. SW2] gi|259020676|gb|EEW23994.1| ribonuclease, Rne/Rng family [Rhodobacter sp. SW2] Length = 870 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 332/669 (49%), Positives = 432/669 (64%), Gaps = 41/669 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHSEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD-------------- 106 YGGNRHGFL F EIHPDYYQIP +DR+ALL+E + ++ Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERALNRAEDDEDNNRSRRSSPRPRRDAP 120 Query: 107 --------------------VTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------I 139 V G+ T + ++ A A S++ E E Sbjct: 121 RAEAVAADPVKTAEIEGMDVVDLGEETGADALFVQRNADRAEVSRDDEAEQPYRAVDHAS 180 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 ++++ S E+ + K R+Y IQEV+K RQI+LVQ+VKEERGNKGAA+TTY Sbjct: 181 ETDDEIESIAEEDVAEEIQAPRKPRIRRYKIQEVVKVRQIMLVQVVKEERGNKGAALTTY 240 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 LSLAGRY VLMPNT++G ISRKIT DRK LKEIA+ +EVP G G+I+RTAGA RTK Sbjct: 241 LSLAGRYCVLMPNTARGGGISRKITMAADRKKLKEIAQEIEVPEGAGLIIRTAGAKRTKA 300 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 EI+RD+EYLMR+W+ VREL L S+AP +YEEG++IKR+IRDLY ++I EI+V G +GYR Sbjct: 301 EIRRDYEYLMRMWEQVRELTLRSMAPAPIYEEGDIIKRSIRDLYNREIDEILVEGAEGYR 360 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 AKDFM+++MPS+A+ V+ Y +P P+F R +E L + V L S GY++I TEAL Sbjct: 361 TAKDFMRMIMPSHAKAVQLYNEPMPLFARFQVEGYLAGMFNPTVQLKSGGYIVIGVTEAL 420 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE++NN SV Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERRNNASV 480 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EK+LK+ LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+ Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSL 540 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 AL ILR++EE + + +++ V+ +L+NQKR I EAR+ +S+ + L Sbjct: 541 ALQILRALEEEGTRKRSKEVLLKGPVAVINFLMNQKREHIALIEARYAMSVRIEADPALV 600 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + IEK +V H A ++ D IP+ + E + Sbjct: 601 SPDYLIEKFKTATRVVPEHHSAAISGNAAMMGAPVDEADDDLIDEDIPEDDEDEVEAAPV 660 Query: 620 VSEESTGVI 628 Sbjct: 661 AEAREPRPE 669 >gi|149914991|ref|ZP_01903520.1| ribonuclease E, putative [Roseobacter sp. AzwK-3b] gi|149811179|gb|EDM71016.1| ribonuclease E, putative [Roseobacter sp. AzwK-3b] Length = 926 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 341/767 (44%), Positives = 444/767 (57%), Gaps = 62/767 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT------------ 108 YGGNRHGFL F EIHPDYYQIP +DR+ L++E A DD Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADREKLMEEERAYAEAMRAKEDDDEKPKSRRRSRSRS 120 Query: 109 ---------------HGDVTIPNDHSLEEVAPIANFSQETEEESIIS------------- 140 GDV L++ P E E+ + Sbjct: 121 KAEAVEDKDAVIRDTSGDVAGMETIDLDDEVPEGTSPMEIVGETPVEEPQDSADLSEDDD 180 Query: 141 --------------ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186 ++ + S +D K R+Y IQEVIK RQILLVQ+VK Sbjct: 181 HHDDEDERRSDASFKDDSIESVADDDDHEDIRPQHKPRPRKYKIQEVIKVRQILLVQVVK 240 Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246 EERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN VDRK LKEIA ++VP G G Sbjct: 241 EERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIANEIDVPQGAG 300 Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 +I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP +YEEG+LIKR+IRDLY +D Sbjct: 301 LIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRD 360 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 I E++V GE+GYR AKDFMK++MPS+A+ V+ Y D P+F R +E L S+ V L Sbjct: 361 IDEVLVEGEQGYRIAKDFMKMIMPSHAKNVKHYADTMPLFARFQVESYLSSMFNPTVQLR 420 Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 S GY++I TEALV+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+D Sbjct: 421 SGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVID 480 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDM+E++NN +VEK+ K+ LK DRAR+QVG IS FGLLEMSRQR+R ++E+TT+ C Sbjct: 481 FIDMDERRNNAAVEKRFKDKLKSDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPA 540 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G G IRS +++LSILR +EE ++ + ++V V YL+NQKR + + E R+ Sbjct: 541 CHGTGLIRSDDNLSLSILRQIEEEGVRRRSREVLVKCPVAVANYLMNQKREHVAQIELRY 600 Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G+S+ + L F +EK V + D + + + Sbjct: 601 GLSVRIEGDPMLISPDFSLEKFKTATRSVPEAVAPVVSVDSSLMDDVDDAIEDEIDDDVE 660 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + S D ++ G + + + +N + + Sbjct: 661 ADTVSDADGDRTQDDDQENGEGKP--------KKRRRRRRRSRSKSKGNGENAAANGDEA 712 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + +D + G E S + E ++ Sbjct: 713 EDQGADDAPSEAAKPADEGAAEVVAGSDEVKADQPAEEDAPQAEAKP 759 >gi|329115662|ref|ZP_08244384.1| Ribonuclease E [Acetobacter pomorum DM001] gi|326695090|gb|EGE46809.1| Ribonuclease E [Acetobacter pomorum DM001] Length = 999 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 298/671 (44%), Positives = 414/671 (61%), Gaps = 15/671 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +MLIDA+H EETRVVV+ NR+E+ D ES KKQ+KGNIYLA+V RVEPSLQAAFV+ Sbjct: 54 MSKRMLIDATHAEETRVVVMDGNRLEDYDVESAAKKQLKGNIYLARVVRVEPSLQAAFVE 113 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK---ESNIAQTDSEAVADDVTHGDVTIPND 117 YGGNRHGFL F EIHPDYYQIP SDR+ LL E +SE +D+ D Sbjct: 114 YGGNRHGFLAFSEIHPDYYQIPVSDREKLLALQAEEEALLENSENGSDEDDASDNAETQA 173 Query: 118 HSLEEVAPIANFSQETEEE---------SIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 E+ ++ + + E E + A + V + + + +F R Y Sbjct: 174 SDTEQDIEASDTAAQNEGEGSEREERSANKPDAPDYVGGETDTGEEALIQKRIARFLRNY 233 Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 IQEVI+ RQ+LLVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN +G +SRKIT+ D Sbjct: 234 RIQEVIRRRQVLLVQVVKEERGNKGAALTTYVSLAGRYCVLMPNALRGGGVSRKITSVAD 293 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 R+ L++I L +P GM +I+RTAGA R EI RD EYL+ LWD++RE L SVAP L+ Sbjct: 294 RRRLRDIVSDLNLPRGMAMIVRTAGAQRPGPEITRDCEYLLHLWDDIREHTLQSVAPALI 353 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP-HPIFF 347 YEE +L+KRAIRD+Y ++ISEI+V GE G++ A+DFM++LMP +A VR + P+F Sbjct: 354 YEEASLVKRAIRDVYTREISEIVVDGENGWKAARDFMRMLMPQHAEKVRLWNKENQPLFT 413 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 +E LD++ V+L S GY++INQTEALV+IDVNSG++T + IE+TA +TN EAA Sbjct: 414 HYHVEGHLDAMFSPVVSLRSGGYLVINQTEALVAIDVNSGKATSQRNIEETAFRTNQEAA 473 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 +E+ARQLRLRDLAGLIV+DFIDME +++N +E++LK++L+ DRAR+Q+G+IS+FGLLEM Sbjct: 474 DEVARQLRLRDLAGLIVIDFIDMESRRHNSMIERRLKDALRHDRARIQIGSISHFGLLEM 533 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 SRQR+R SV E+ C +C G G +RS S AL +LR+VEE + + I VH +D+ Sbjct: 534 SRQRLRPSVAEAAFMPCPHCNGTGMMRSIESSALHVLRAVEEEGARRRSSAITVHVAADI 593 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 Y+LN KR + + E R + + L IE+ + ++ Sbjct: 594 AFYILNNKRDWLTQIEQRHQMEVLFAADNTLPAPEVRIERRQHARPPRIQPPLPPVENIV 653 Query: 588 PSYDKNIECV--WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + + + S E + + + +P T+ Sbjct: 654 ADEVAAATPEIPAAEPSSIQETADTSDEPRRRRRRRRRRRNDQDTNQVSETQTQPDTETP 713 Query: 646 DAGVVSDVSSI 656 + + +++ Sbjct: 714 ETAETAPIAAP 724 >gi|58040162|ref|YP_192126.1| ribonuclease E [Gluconobacter oxydans 621H] gi|58002576|gb|AAW61470.1| Ribonuclease E [Gluconobacter oxydans 621H] Length = 892 Score = 509 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 316/726 (43%), Positives = 434/726 (59%), Gaps = 31/726 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLID +H EETRVVV+ +RVE+ D E+ KKQ+KGNIYLAKV RVEPSLQAAFV+ Sbjct: 33 MTKRMLIDTTHAEETRVVVMDGDRVEDYDVETSTKKQLKGNIYLAKVIRVEPSLQAAFVE 92 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDY+QIP +DR+ L+ + +DD Sbjct: 93 YGGNRHGFLAFSEIHPDYFQIPVADREKLIALQEEEIAERGESSDDAET----------- 141 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E E + A V + + + +F R Y IQEVI+ RQ+L Sbjct: 142 -ETVSEDATDSEDGDNQDRRAPETVGGEHDTGEESASSRRTARFLRNYKIQEVIRRRQVL 200 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN +G +SRKIT+ DR+ L+++ L+ Sbjct: 201 LVQVVKEERGNKGAALTTYISLAGRYCVLMPNALRGGGVSRKITSDSDRRRLRDVIAELD 260 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P M +I+RTAGA R E+ RD EYL++LWD++R AL+SVAP LVYEE +LIKR IR Sbjct: 261 LPKSMAMIVRTAGAGRPAAEVTRDCEYLLQLWDDIRSHALSSVAPTLVYEEASLIKRVIR 320 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLH 359 DLY KDI +I+V GE ++ A++FM+LLMPS A V+ + +F R +E LD++ Sbjct: 321 DLYSKDIEDILVDGEAAWKSAREFMRLLMPSNANKVKLWQNRGQSLFARYNVEGHLDAMF 380 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 LPS GY++INQTEALV+IDVNSG+ST + IE+TAL+TNLEAAEE+ARQLRLRDL Sbjct: 381 SPTARLPSGGYLVINQTEALVAIDVNSGKSTSQRNIEETALRTNLEAAEEVARQLRLRDL 440 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 AGL+V+DFIDME +++N VEK+LKE+L+ DRAR+QVG IS+FGLLEMSRQR+R S+ ES Sbjct: 441 AGLVVIDFIDMESRRHNAQVEKRLKEALRSDRARIQVGHISHFGLLEMSRQRLRPSIAES 500 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 C +C+G G+IR S AL +LR+++E + + I VH SD+ LY+LN KR+ + Sbjct: 501 VLTPCPHCQGTGFIRGTESSALHVLRAIDEEGARQRSSEIEVHVGSDIALYILNHKRSWL 560 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + E + + LA IE+ +V + +AP + + IE + + Sbjct: 561 TDIERHHRMQVIFRTEENLAAADMRIERLQAQT---PAPAQVRAPERAPEHIRTIEIIEE 617 Query: 600 DEALL-----PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR----------PATDH 644 + ++ P+ +E +ED+ + EES G R+RRRRRR R + Sbjct: 618 EAPVVVRTETPVVDAEIIEDVATSESEEESNGGRRRRRRRRRGGRRDQNGDVPAAENSQE 677 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 DA D + ++++ + Sbjct: 678 QDAAKAEPREIAAPEAADENGIIPGRRRTRFKRVVKDTEGSEDTAAQPVSEARDVTPAAT 737 Query: 705 SNSSSD 710 + S++ Sbjct: 738 TRSNAP 743 >gi|254439845|ref|ZP_05053339.1| ribonuclease, Rne/Rng family protein [Octadecabacter antarcticus 307] gi|198255291|gb|EDY79605.1| ribonuclease, Rne/Rng family protein [Octadecabacter antarcticus 307] Length = 929 Score = 509 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 342/808 (42%), Positives = 453/808 (56%), Gaps = 89/808 (11%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ N+VEE DFE++ ++Q+ GNIYLAKVTRVEPSLQAAF+DYGGN Sbjct: 1 MLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFIDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT-------------------------- 98 RHGFL F EIHPDYYQIP +DR AL+ E Sbjct: 61 RHGFLAFNEIHPDYYQIPVADRLALIAEEKAYAESQKAEAEAEAEKPKRTRRRRKPRAAE 120 Query: 99 ----------DSEAVADDVTHGDVTIPNDHSLEEVAPI-----ANFSQETEEESI----- 138 D A +D T GD+ L + A+ +T E+S Sbjct: 121 VDGQDAVATADPVATTEDETSGDIAGMETIDLSDEGSSPMEIVADTPVDTPEQSAGDSDD 180 Query: 139 --------------------ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + ++ + S ++ V K ++Y IQEVIK RQ Sbjct: 181 VADNDDRDGDDTDGDGGSDASAKDDSIESIADEDDYEDVRPVRKPRPKRYKIQEVIKVRQ 240 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 ILL+Q+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKIT DRK LK IA Sbjct: 241 ILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKAIAND 300 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 + VP G G+I+RTAG+ RTK EIKRD+EYL RLW+ +REL L S AP +YEEGNLIKR+ Sbjct: 301 MSVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLRSSAPAQIYEEGNLIKRS 360 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 IRDLY KDI E+IV GE GYR AKDFMK++MPS+A+ V Y++ P+F R IE L + Sbjct: 361 IRDLYSKDIDEVIVEGEGGYRTAKDFMKMIMPSHAKNVTNYKEQMPLFARHQIESYLSGM 420 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 V LPS GY++I+ TEALV++DVNSGR+T+E IE TA +TNLEAA E+ARQLRLRD Sbjct: 421 FNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRD 480 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 LAGLIV+DFIDM+E+KNN SVEK +K+ LK DRAR+QVG IS FGL+EMSRQR+R +LE Sbjct: 481 LAGLIVIDFIDMDERKNNASVEKLMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLE 540 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 STT+ C++C G G +RS +VAL ILR +EE ++ + +++ + +L+NQKR Sbjct: 541 STTQPCSHCHGTGLLRSDDNVALGILRQLEEEGVRGRSKEVLIKAPIVIANFLMNQKREH 600 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 I + E R+G+S+ + L F +EK +V V S + ++ Sbjct: 601 IAQIETRYGLSVRIECDPHLVSPDFVLEKFKTASRVVAEVEIVSVISSDTAVMAEVDDAP 660 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 +E + + + ++ + E+ G ++RRRRRRR + D ++ N Sbjct: 661 MEEVEIEVAATVETKNEGASTAPEQQEGEAPTKKRRRRRRRRRGGGDNVDANGDTTAQNN 720 Query: 659 VIDDSF-----------------------DMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 + P + + Sbjct: 721 GEAAAAVPSDTQTAVASTEQGDTPAADAVAAEDAPKPKRTRSRRKKAEALVQSAEVTESV 780 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + +D K R RRK Sbjct: 781 DAAVVGAVTDEAVTDDAPKPKRTRARRK 808 Score = 51.1 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 4/150 (2%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A+V AP + + + ++ + E + + Sbjct: 781 DAAVVGAVTDEAVTDDAPKPKRTRARRKKADDVVSGDAAAVQETAPVAEAAPSDAPAEKP 840 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 +R R R++PA V++ + + ++ +E + + Sbjct: 841 KRAPRNRKKPAAKAEVEVAVAE--TPAETVVEAPTETLETVAVDKPKRVRRTTSKPKVEP 898 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + P P E+ +D KK WW Sbjct: 899 EAAPTPEVAPVTEAPV--ADDAPKKRGWWS 926 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 4/155 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+G A + S K E + Q + + + + D V++++ Sbjct: 739 EQGDTPAADAVAAEDAPKPKRTRSRRKKAEALVQSAEVTESVDAAVVGAVTDEAVTDDA- 797 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +R R RR++ ++ S +P N + A Sbjct: 798 --PKPKRTRARRKKADDVVSGDAAAVQETAPVAEAAPSDAPAEKPKR-APRNRKKPAAKA 854 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 E P + E + + + K R + Sbjct: 855 EVEVAVAETPAETVVEAPTETLETVAVDKPKRVRR 889 >gi|254451380|ref|ZP_05064817.1| ribonuclease E [Octadecabacter antarcticus 238] gi|198265786|gb|EDY90056.1| ribonuclease E [Octadecabacter antarcticus 238] Length = 954 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 335/789 (42%), Positives = 445/789 (56%), Gaps = 79/789 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFE++ ++Q+ GNIYLAKVTRVEPSLQAAF+D Sbjct: 14 MAKKMLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFID 73 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT---------------------- 98 YGGNRHGFL F EIHPDYYQIP +DR AL+ E Sbjct: 74 YGGNRHGFLAFNEIHPDYYQIPVADRLALIAEEKAYAESQKAEAEAEKPKRSRTRTRRKP 133 Query: 99 --------------DSEAVADDVTHGDVTIPNDHSLEEV--------------------- 123 D +++ T GD+ L + Sbjct: 134 KAAEVDGQDAVATADPVETSEEETSGDIAGMETIDLSDDETGEGSSPMETVADTPVDTPE 193 Query: 124 ----------APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173 + + + S ++ V K ++Y IQEV Sbjct: 194 QGSGDGDDVADNETDGDDSDGGTEATDKDETIESVADEDDHEDVRPVRKPRPKRYKIQEV 253 Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 IK RQILL+Q+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKIT DRK LK Sbjct: 254 IKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLK 313 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 IA + VP G G+I+RTAG+ RTK EIKRD+EYL RLW+ +REL L S AP +YEEGN Sbjct: 314 AIANEMAVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLRSSAPAQIYEEGN 373 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 LIKR+IRDLY K+I E+IV GE GYR AKDFMK++MPS+A+ V Y++ P+F R IE Sbjct: 374 LIKRSIRDLYSKEIDEVIVEGEGGYRTAKDFMKMIMPSHAKNVINYKEQMPLFARHQIES 433 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 L + V LPS GY++I+ TEALV++DVNSGR+T+E IE TA +TNLEAA E+ARQ Sbjct: 434 YLSGMFNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQ 493 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLRDLAGLIV+DFIDM+E+KNN SVEK +K+ LK DRAR+QVG IS FGL+EMSRQR+R Sbjct: 494 LRLRDLAGLIVIDFIDMDERKNNASVEKLMKDKLKTDRARIQVGRISGFGLMEMSRQRLR 553 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 +LESTT+ C++C G G +RS ++VAL ILR +EE + + +++ + +L N Sbjct: 554 PGMLESTTQPCSHCHGTGLLRSDANVALGILRQLEEEGVHGRSKEVLIKAPIVISNFLTN 613 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 QKR I + EAR+G+S+ + L F +EK +V V S + Sbjct: 614 QKREHIAQIEARYGLSVRIECDPHLVSPDFVLEKFKTASRVVAEVELVSVISSETAVMAE 673 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 ++ +EA + + S + ++ E G T Sbjct: 674 VDDAPMEEAEIEVTASVEAKTEGHSVAPESQDGDAP------------TKKRRRRRRRRR 721 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S ++ + +D ++++ D PV +++ P Sbjct: 722 GSGGGENAEANGEHAAHNDGDAAVVVKSDTLADVTPSDQGETPVVDAVVDAVAVEDAPKP 781 Query: 714 KKTRWWKRR 722 K+TR +++ Sbjct: 782 KRTRTRRKK 790 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 3/152 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++G D+ P D + +E +E S E+ Sbjct: 759 DQGETPVVDAVVDAVAVEDAPKPK-RTRTRRKKADAPVESAEVTEIVEAALVEAASAEAA 817 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +R R RR D D ++ +P A Sbjct: 818 AEDAPKPKRTRSRRKKAD--DVPSDDAPAAPVAEAAPVGAPAAKPKRAPRSRKKPAAAVD 875 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 T + P++ E+ K+ R Sbjct: 876 DTAVAETPAEPIAAFPAETPEPVVADKPKRVR 907 >gi|162148126|ref|YP_001602587.1| ribonuclease E [Gluconacetobacter diazotrophicus PAl 5] gi|161786703|emb|CAP56286.1| putative ribonuclease E [Gluconacetobacter diazotrophicus PAl 5] Length = 1036 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 315/700 (45%), Positives = 412/700 (58%), Gaps = 6/700 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLID +H EETRVVV+ NR+E+ D E+ KKQ+KGNIYLAKV RVEPSLQAAFV+ Sbjct: 30 MNKRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVE 89 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ LL EA D+ D Sbjct: 90 YGGNRHGFLAFSEIHPDYYQIPVADREKLLALQE-----EEARIDEAQSQDDDAEAPAEP 144 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A+ + + V + + +F R Y IQEVI+ RQIL Sbjct: 145 AAADAQADGDAQAADGEAEPLPETVGGETDTGDESLVQRRIARFLRNYKIQEVIRRRQIL 204 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G +SRKIT+ DR+ LK++ L+ Sbjct: 205 LVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRKITSVADRRRLKDVIAELQ 264 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P GM +I+RTAGA R + EI RD EYL+RLWD++R+ ++SVAP L+YEE +LIKRAIR Sbjct: 265 IPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHSVAPALIYEEASLIKRAIR 324 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLH 359 D+Y +D+ EI+V GE G++ A++FM++LMP A ++ + P+F +E LDS+ Sbjct: 325 DIYTRDVGEILVDGEAGWKSAREFMRMLMPQSAPKVKCWRDGGQPLFSHFNVEGLLDSML 384 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++INQ EALV+IDVNSGR+TRE IE+TAL+TNLEAAEE+ARQLRLRDL Sbjct: 385 SPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALRTNLEAAEEVARQLRLRDL 444 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 AGLIV+DFIDME +K+N VE++LK++L+ DRAR+QVGAIS+FGLLEMSRQR+R S+ ES Sbjct: 445 AGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISHFGLLEMSRQRLRPSIAES 504 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T C +C+G G IR S AL +LR+VEE + A I VH +++ LY+LN KRA + Sbjct: 505 TFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRAAEITVHVAAEIALYILNNKRAWL 564 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E E R + + L IE+ P + E Sbjct: 565 SEIEKRHKMHVVFSPDASLLPPQLRIERVRPQTERFEPVAPPVLAEPTDILAEETEAAAP 624 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 +PI + + ST + RRRRR Sbjct: 625 VVREIPIQAEAPADAAVAAEAAPVSTEEGEEGTDHRRRRRRRRRRRGGERAEGAPQAVPA 684 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + E + N E E+ P Sbjct: 685 EAADAEQADEDAGHGNEGEEETAPAIHAESVAEPAPAREE 724 >gi|221638542|ref|YP_002524804.1| RNAse E [Rhodobacter sphaeroides KD131] gi|221159323|gb|ACM00303.1| RNAse E [Rhodobacter sphaeroides KD131] Length = 890 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 343/764 (44%), Positives = 444/764 (58%), Gaps = 46/764 (6%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ N+VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD------------------- 105 RHGFL F EIHPDYYQIP +DR+ALL+E + Sbjct: 61 RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA 120 Query: 106 ---------------DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------ISANN 143 + T D D S A +E ++ Sbjct: 121 VQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEASDADEKPYRAMDHASDGDD 180 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 ++ S ++ K R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLA Sbjct: 181 EIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLA 240 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 GRY VLMPNT++G ISRKIT DRK LKEIA LEVP G G+I+RTAGA RTK EI+R Sbjct: 241 GRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRR 300 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 D+EYL+RLW+ +R+L L SVAP +YEEG+LIKR IRDL+ ++I E++V GE GYR AKD Sbjct: 301 DYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKD 360 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 FM+++MP++AR V +Y++P P+F R +E L + V L S GY++I TEALV+ID Sbjct: 361 FMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAID 420 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK+L Sbjct: 421 VNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRL 480 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 K+ LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+AL + Sbjct: 481 KDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQV 540 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR +EE + + +++ VV +L+N KR I EAR+G+++ V L+ + Sbjct: 541 LRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIALIEARYGMAVRVEADPSLSSPDY 600 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-----DEALLPIPKSESLEDIQDN 618 IEK +V KV S S E E + + + + Sbjct: 601 VIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVAEAAEAAPS 660 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + R+RRR +D + G D S +E + Sbjct: 661 EGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAAVPELA 720 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E P + P + K+TR K + Sbjct: 721 PEAVVSAPEPAAVEPEPAPAEPVAAPAAEEPAAPRKRTRTRKPK 764 >gi|114326947|ref|YP_744104.1| ribonuclease E [Granulibacter bethesdensis CGDNIH1] gi|114315121|gb|ABI61181.1| ribonuclease E [Granulibacter bethesdensis CGDNIH1] Length = 949 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 324/766 (42%), Positives = 445/766 (58%), Gaps = 49/766 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KMLIDASH EETRVVV+ NR+E+ D E+ +KQIKGNIYLAKV RVEPSLQAAFV+ Sbjct: 49 MTKKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVE 108 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI------------------------- 95 YGGNRHGFL F EIHPDYYQIP +DRQ LL Sbjct: 109 YGGNRHGFLAFSEIHPDYYQIPVADRQRLLAMQEEEAREEEEAEEAEFSAAEARRSASRP 168 Query: 96 ---AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 A+ +A ++ D + A+FS E +E + A+ + E+ Sbjct: 169 LNNAREVIQADSEQPEASDPQEDGADHGVQDESAADFSGEAGDEGSVPASAGEGDDQEES 228 Query: 153 K--------GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 + E +F R Y IQEVIK RQILL+Q+VKEERGNKGAA++TY+SLAG Sbjct: 229 RQASRPARQKEDRERRSPRFLRNYKIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAG 288 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RY VLMPN+ +G +SRKIT+ DR+ LK+I LE+P GMG+I+RTAG +R K EI RD Sbjct: 289 RYCVLMPNSPRGGGVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRD 348 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 EYL+RLWD++R++ L S AP L++EE +LIKRAIRD+Y I E++V GE+G+R A+D Sbjct: 349 CEYLLRLWDDIRDITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDI 408 Query: 325 MKLLMPSYARIVRQYEDP-----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 M++LMPS+AR V + P+F +E QLD++ V+L S GY++INQ EAL Sbjct: 409 MRMLMPSHARKVICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEAL 468 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSGRST+E IE+TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDME +K+N V Sbjct: 469 VAIDVNSGRSTKERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMV 528 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 E++LKE+LK DRAR+QVG IS+FGLLEMSRQR+R S+ E++ C +C G G +R+ Sbjct: 529 ERRLKEALKNDRARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGA 588 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 ++ +LR++EE + I+VH +DV Y+LN +R + E+RFG+ + + + Sbjct: 589 SVHVLRAIEEEGARRRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLFSADTQFS 648 Query: 560 DKLFYIE--KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPIPKSESLE 613 IE + ++ +V T +D Q + + + + Sbjct: 649 GSQLRIEKIRARAMEDVVRTPLIGVADPQPSVAGDLYDFADASDGFATFEAAPVAALPVA 708 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD--MYMEPS 671 + + + E + P D + N +D + M Sbjct: 709 VQAEPVGTAEEGNNGGRLPSAEGDSEPGPDDGERRRRRRRRRRGNRRNDGAENGMDARSE 768 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N N +E G + + S PV T E+ + +S +T+ Sbjct: 769 QDENGNPVEEGEGVRHGDANTSALPVETTELTVAGVASKETSAETQ 814 >gi|255263043|ref|ZP_05342385.1| ribonuclease E [Thalassiobium sp. R2A62] gi|255105378|gb|EET48052.1| ribonuclease E [Thalassiobium sp. R2A62] Length = 887 Score = 504 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 332/797 (41%), Positives = 444/797 (55%), Gaps = 77/797 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFES K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESASKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIP----- 115 YGGNRHGFL F EIHPDYYQIP +DR+AL+ E A + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALIAEERAYAEQQRADDEAKANAPKRRRSRRKP 120 Query: 116 --NDHSLEEVAPIANFSQETEE-------------------------------------- 135 + + ++ A ET E Sbjct: 121 KAEEVASDDAIVTAEVEGETSETAVEDALLIDETPTSNEPEGMETIDLESGSDAPIVDGD 180 Query: 136 ---------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186 + ++ + S ++ V K ++Y IQEV+K RQILLVQ+VK Sbjct: 181 DDEDDAPTMSDATAKDDGIESVADEDDSEDVRPVRKPRPKRYKIQEVVKVRQILLVQVVK 240 Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246 EERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN VDRK LKEIA ++VP G G Sbjct: 241 EERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIANEIDVPDGAG 300 Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 +I+RTAGA RTK EIKRD+EYL+RLW+ +REL L S+AP +YEEGNLIKR+IRDLY ++ Sbjct: 301 LIVRTAGAKRTKTEIKRDYEYLLRLWEQIRELTLKSIAPSKIYEEGNLIKRSIRDLYNRE 360 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 I E+ V G GYR AKDFMK++MPS+A+ V+ Y+DP P+F R +E L + V LP Sbjct: 361 IDEVFVEGADGYRVAKDFMKMIMPSHAKNVKHYQDPLPLFARYQVESYLAGMFNPTVQLP 420 Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 S GY++I TEALV+IDVNSGR+T+E IE TAL+TNLEA++E+ARQLRLRDLAGLIV+D Sbjct: 421 SGGYIVIGVTEALVAIDVNSGRATKEGSIEQTALKTNLEASDEVARQLRLRDLAGLIVID 480 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 +IDM+E++NN +VEK+LK+ LK DRAR+QVG IS FGLLEMSRQR+R ++E+TT+ C + Sbjct: 481 YIDMDERRNNTAVEKRLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCVH 540 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G G +RS ++AL ILR +EE ++ + ++V + +L+N KR I + E R+ Sbjct: 541 CHGTGLLRSDDNMALGILRQLEEEGVRGKSKEVLVKAPVPIANFLMNNKREHIGQIEGRY 600 Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G+S+ + + F IEK +V A D E +E Sbjct: 601 GLSVRIEGDPFMISPDFAIEKFKTATRVVAPVDHAVISGSAIIMDDVDEDQASEETEAEA 660 Query: 607 PKS------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 ++ E + G + + + + + + + Sbjct: 661 AEAQQNAEGEDKPKRRRRRRRRRRGGGNGENAEGQGENQSEGQDAGSEEAAHDGAAETAS 720 Query: 661 DDSFDMYMEPSDITNHNLLEN-----------------GAHGFTENYDVSIPPVSTPEME 703 DD+ + + E+ T + P Sbjct: 721 DDALVEAAPTEAPSEEAVKEDKPKRKRTRSRKKAEPEAAVEASTADTPTEEPAQEAKPAA 780 Query: 704 SSNSSSDPIVKKTRWWK 720 ++ K R + Sbjct: 781 EDAPKAEEKPKPKRTRR 797 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 38/166 (22%), Gaps = 4/166 (2%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +E + + K E EA +E Sbjct: 719 ASDDALVEAAPTEAPSEEAVKEDKPKRKRTRSRKKAEPEAAVEASTADTPTEEPAQEAKP 778 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + + + +R RR++ A + V + + Sbjct: 779 AAEDAPKAEEKPKPKRTRRKKAEPKAEAAALADAVVAEAAPEAAPEPKAAPEPEAAPEPE 838 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSS----DPIVKKTRWWK 720 VS + P +E+ + D KK WW Sbjct: 839 AAPEPKPKKTRTRVSKAKPAEPVVEAPAAEEPASDDGKPKKKGWWS 884 >gi|258543056|ref|YP_003188489.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-01] gi|256634134|dbj|BAI00110.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-01] gi|256637194|dbj|BAI03163.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-03] gi|256640246|dbj|BAI06208.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-07] gi|256643303|dbj|BAI09258.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-22] gi|256646358|dbj|BAI12306.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-26] gi|256649411|dbj|BAI15352.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-32] gi|256652397|dbj|BAI18331.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655455|dbj|BAI21382.1| ribonuclease E [Acetobacter pasteurianus IFO 3283-12] Length = 997 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 294/684 (42%), Positives = 410/684 (59%), Gaps = 15/684 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +MLIDA+H EETRVVV+ NR+E+ D ES KKQ+KGNIYLA+V RVEPSLQAAFV+ Sbjct: 54 MSKRMLIDATHAEETRVVVMDGNRLEDYDVESAAKKQLKGNIYLARVVRVEPSLQAAFVE 113 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP SDR+ LL + E + D + + Sbjct: 114 YGGNRHGFLAFSEIHPDYYQIPVSDREKLLALQAEEEALLENAENGADEDDASDNAEAQA 173 Query: 121 EEVA------------PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 + +E + A + V + + + +F R Y Sbjct: 174 SDTEQDTEASDTSAQSEDEGSEREERSANKQDAPDYVGGETDTGEEALIQKRIARFLRNY 233 Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 IQEVI+ RQ+LLVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN +G +SRKIT+ D Sbjct: 234 RIQEVIRRRQVLLVQVVKEERGNKGAALTTYVSLAGRYCVLMPNALRGGGVSRKITSVAD 293 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 R+ L++I L +P GM +I+RTAGA R EI RD EYL+ LWD++RE L SVAP L+ Sbjct: 294 RRRLRDIVSDLNLPRGMAMIVRTAGAQRPGPEITRDCEYLLHLWDDIREHTLQSVAPALI 353 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP-HPIFF 347 YEE +L+KRAIRD+Y ++ISEI+V GE G++ A+DFM++LMP +A VR + P+F Sbjct: 354 YEEASLVKRAIRDVYTREISEIVVDGENGWKAARDFMRMLMPQHAEKVRLWNKENQPLFT 413 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 +E LD++ V+L S GY++INQTEALV+IDVNSG++T + IE+TA +TN EAA Sbjct: 414 HYHVEGHLDAMFSPVVSLRSGGYLVINQTEALVAIDVNSGKATSQRNIEETAFRTNQEAA 473 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 +E+ARQLRLRDLAGLIV+DFIDME +++N +E++LK++L+ DRAR+Q+G+IS+FGLLEM Sbjct: 474 DEVARQLRLRDLAGLIVIDFIDMESRRHNSMIERRLKDALRHDRARIQIGSISHFGLLEM 533 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 SRQR+R SV E+ C +C G G +RS S AL +LR+VEE + + I VH +D+ Sbjct: 534 SRQRLRPSVAEAAFMPCPHCNGTGMMRSIESSALHVLRAVEEEGARRRSSAITVHVAADI 593 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 Y+LN KR + + E R + + L IE+ + ++ Sbjct: 594 AFYILNNKRDWLTQIEQRHQMEVLFAADNTLPAPEVRIERRQHARPPRIQPPLPPVENIV 653 Query: 588 PSYDKNIECV--WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + + S E + + + + Sbjct: 654 ADEVIAAAPEIPATEPTAIQETVDNSDEPRRRRRRRRRRRSDQDTNQTPATQTQSDAIAP 713 Query: 646 DAGVVSDVSSIQNVIDDSFDMYME 669 +A + +++ +N ++ + E Sbjct: 714 EADEAAPIAASENTVEPVAEADAE 737 >gi|209542767|ref|YP_002274996.1| Rne/Rng family ribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209530444|gb|ACI50381.1| ribonuclease, Rne/Rng family [Gluconacetobacter diazotrophicus PAl 5] Length = 1009 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 305/631 (48%), Positives = 399/631 (63%), Gaps = 6/631 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLID +H EETRVVV+ NR+E+ D E+ KKQ+KGNIYLAKV RVEPSLQAAFV+ Sbjct: 1 MNKRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ LL EA D+ D Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREKLLALQE-----EEARIDEAQSQDDDAEAPAEP 115 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A+ + + V + + +F R Y IQEVI+ RQIL Sbjct: 116 AAADAQADGDAQAADGEAEPLPETVGGETDTGDESLVQRRIARFLRNYKIQEVIRRRQIL 175 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G +SRKIT+ DR+ LK++ L+ Sbjct: 176 LVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRKITSVADRRRLKDVIAELQ 235 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P GM +I+RTAGA R + EI RD EYL+RLWD++R+ ++SVAP L+YEE +LIKRAIR Sbjct: 236 IPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHSVAPALIYEEASLIKRAIR 295 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLH 359 D+Y +D+ EI+V GE G++ A++FM++LMP A ++ + P+F +E LDS+ Sbjct: 296 DIYTRDVGEILVDGEAGWKSAREFMRMLMPQSAPKVKCWRDGGQPLFSHFNVEGLLDSML 355 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++INQ EALV+IDVNSGR+TRE IE+TAL+TNLEAAEE+ARQLRLRDL Sbjct: 356 SPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALRTNLEAAEEVARQLRLRDL 415 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 AGLIV+DFIDME +K+N VE++LK++L+ DRAR+QVGAIS+FGLLEMSRQR+R S+ ES Sbjct: 416 AGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISHFGLLEMSRQRLRPSIAES 475 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T C +C+G G IR S AL +LR+VEE + A I VH +++ LY+LN KRA + Sbjct: 476 TFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRAAEITVHVAAEIALYILNNKRAWL 535 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E E R + + L IE+ P + E Sbjct: 536 SEIEKRHKMHVVFSPDASLLPPQLRIERVRPQTERFEPVAPPVLAEPTDILAEETEAAAP 595 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 +PI + + ST + Sbjct: 596 VVREIPIQAEAPADAAVAAEAAPVSTEEGEE 626 >gi|110634063|ref|YP_674271.1| ribonuclease E [Mesorhizobium sp. BNC1] gi|110285047|gb|ABG63106.1| RNAse E [Chelativorans sp. BNC1] Length = 868 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 377/733 (51%), Positives = 479/733 (65%), Gaps = 25/733 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDASH EETRVVVLR NR+EE DFES+ KKQ++GNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MPNKMLIDASHPEETRVVVLRGNRIEEFDFESQDKKQLRGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDS-------------------E 101 YGGNRHGFL F EIHPDYYQIP +DRQALL+ + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALLEAEAEEARAADEAEEGEAQAGRGRKRRRRD 120 Query: 102 AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161 A D+V + ++ + + + + +++V + + ++ Sbjct: 121 AKTDEVVSEGKDVAQPEAVRDDTVSEPLAADGNGSDEANGSDEVDTVGAEDALDEAQNRR 180 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 + +R Y IQEVIK RQI+LVQ+VKEERG+KGAA+TTYLSLAGRYSVLMPNT++G ISR Sbjct: 181 RPVRRNYKIQEVIKRRQIMLVQVVKEERGSKGAALTTYLSLAGRYSVLMPNTARGGGISR 240 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KITN DRK LKE+ +GL+VP GMGVILRTAGA+RTK EIKRD+EYLMRLW+ VR L L Sbjct: 241 KITNLQDRKRLKEVVKGLDVPEGMGVILRTAGANRTKAEIKRDYEYLMRLWERVRTLTLE 300 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 S+AP LVYEEG+LIKRA+RDLY KDI EI+V+GE GYREAKDFM++LMPS+A+ V+ Y D Sbjct: 301 SIAPALVYEEGSLIKRAVRDLYNKDIDEILVAGEDGYREAKDFMRMLMPSHAKAVQPYRD 360 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 PIF R+GIE QLD + Q +VTL S GY+IINQTEALV+IDVNSGRST+EH IEDTALQ Sbjct: 361 SVPIFARNGIEAQLDKMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEDTALQ 420 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAAEEI+RQLRLRDLAGLIV+DFIDMEE +NNR+VEK+LKE LK DRAR+QVG IS+ Sbjct: 421 TNLEAAEEISRQLRLRDLAGLIVIDFIDMEENRNNRAVEKRLKECLKSDRARIQVGRISH 480 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGLLEMSRQRIRSSVLEST + C +C G G++RS SSVAL ++R++EEYLL+ H+I V Sbjct: 481 FGLLEMSRQRIRSSVLESTMQPCPHCGGTGHVRSDSSVALLVVRAIEEYLLKDGRHDITV 540 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 T + LYLLN KRAT+VE E+RFGV I + EL + + I KG P + + V Sbjct: 541 RTPTSTALYLLNHKRATLVEMESRFGVEITIETDEELGTQHYAIVKGQPSTRVPASRAVV 600 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR---- 637 + + + V + E L + K R + Sbjct: 601 QAVPEVEDEAEEETYVEETEELEEKQTAAEEPGGPGRKRRRRRRRRGGKDRAAEQAAPHS 660 Query: 638 --RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 ++ +D+++ + + + + + + G + + + Sbjct: 661 AVTEEISEPAAETGEADLTAAETEAEAADVEAGDGGPRKKRHRGKRGGKRNRRDEEAAPE 720 Query: 696 PVSTPEMESSNSS 708 T + E Sbjct: 721 DAVTAQSEEPAGE 733 Score = 45.0 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 43/156 (27%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + SE+ + + + Sbjct: 710 RNRRDEEAAPEDAVTAQSEEPAGEIQAEAASEAVSSEAAAATSEAAAAEAEPVAEVSAEE 769 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 V+ + + ++ RR DA D+ + + E+ Sbjct: 770 VVVEEKPAKKPRRKTRAKKDAAADEIAQPAPVAQDEEPAPAAPTVEALVEDKPEDKPSKP 829 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + P + S+ S + +KT WW+R+ Sbjct: 830 SRRTAANTSEKPKPVVTSTGESGEAPARKTGWWQRK 865 >gi|315121914|ref|YP_004062403.1| ribonuclease E [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495316|gb|ADR51915.1| ribonuclease E [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 743 Score = 499 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 507/743 (68%), Positives = 569/743 (76%), Gaps = 20/743 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASHVEETRVVVLRDNRVE+LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDASHVEETRVVVLRDNRVEDLDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK SN+ +D V + +D + Sbjct: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKVSNVQTDSGVVDSDVVITDSGVVDSDIVI 120 Query: 121 EEVAPIANFSQ---ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177 + T I ++NDVV + E+V+ S E+V KK +RQYCIQEVIKNR Sbjct: 121 NDDVNSVELDDVASTTNLSHEICSSNDVVFDNENVEVDSSENVSKKLRRQYCIQEVIKNR 180 Query: 178 QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIAR 237 QILLVQ+VKEERGNKGAAVTTYLSLAGRYSVLMPNT KGE ISRK+TNPVDR NLKEIAR Sbjct: 181 QILLVQVVKEERGNKGAAVTTYLSLAGRYSVLMPNTPKGEAISRKVTNPVDRNNLKEIAR 240 Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 LEVP GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE ALNSVAPHLVYEEG+LIKR Sbjct: 241 TLEVPPGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREFALNSVAPHLVYEEGSLIKR 300 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 AIRDLY KDI+EIIVSGEKGYREAKDFMKLLMPSYA+IVRQY D HPIF SGIE QLD Sbjct: 301 AIRDLYSKDITEIIVSGEKGYREAKDFMKLLMPSYAKIVRQYNDVHPIFSHSGIEAQLDC 360 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 LH TEVTLPSRGY+IINQTEALV+IDVNSGRSTREH IE TA QTNLEA+EEIARQLRLR Sbjct: 361 LHHTEVTLPSRGYIIINQTEALVAIDVNSGRSTREHSIESTAFQTNLEASEEIARQLRLR 420 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DLAGLIVVDFIDMEEK+NNR+VEKKLK+SLKKDRARVQVG+IS+FGLLEMSRQRIRSSVL Sbjct: 421 DLAGLIVVDFIDMEEKRNNRAVEKKLKDSLKKDRARVQVGSISHFGLLEMSRQRIRSSVL 480 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 ESTTK+C+ CKG+GY+RSQSS+ LSILRS+EEYLL+YT HNIIVHTH D VLYLLNQKRA Sbjct: 481 ESTTKICSTCKGSGYVRSQSSITLSILRSIEEYLLEYTTHNIIVHTHPDFVLYLLNQKRA 540 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 TIVEYE+RFGVSINVVIG+ LADKLF IEKGSPVQ V H V +KN+EC Sbjct: 541 TIVEYESRFGVSINVVIGLSLADKLFNIEKGSPVQCPVKIEHIVDFSHIQMEDNKNVECS 600 Query: 598 WQDE----ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR-------------RRP 640 +D+ + + KS + +D D+ + + + RRP Sbjct: 601 QKDQNVLLPISNLEKSGNTQDKIDDSIEQSINSRDTEGALDESSGIVVRKRRRRRRRRRP 660 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 +H D + SI +V+DDS + S + L + IP Sbjct: 661 VIEHSDVVASDVLGSITHVVDDSLAIQDIESAHIQNQNLASDDSPELIAESGFIPNPLPI 720 Query: 701 EMESSNSSSDPIVKKTRWWKRRK 723 E+ N++S+P+V+K WW+RRK Sbjct: 721 TSETDNNTSEPVVRKIGWWRRRK 743 >gi|126735805|ref|ZP_01751550.1| ribonuclease E, putative [Roseobacter sp. CCS2] gi|126714992|gb|EBA11858.1| ribonuclease E, putative [Roseobacter sp. CCS2] Length = 879 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 334/780 (42%), Positives = 452/780 (57%), Gaps = 58/780 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KMLIDA+H EETRVVV+ N+VEE DFES+ K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MPKKMLIDATHAEETRVVVVDGNKVEEFDFESQFKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN-------------------------I 95 YGGNRHGFL F EIHPDYYQIP +DR+AL+ E Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALIAEEKAYAESLKAEAEAEEEKPKPKRRRRSK 120 Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE------------------- 136 A+ D V G+V P + + ++A + + EE Sbjct: 121 AKAAEVEGDDAVVTGEVETPEEETSGDIAGMETIDLDDSEEGSSPMELVAETPVETPAAG 180 Query: 137 -------------SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 S + + S E+ V K ++Y IQEVIK RQILL+Q Sbjct: 181 EDEDDDEDEQPKADPKSKDETIESVAEEDDTDEVRPVRKPRPKRYKIQEVIKVRQILLIQ 240 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK LKEIA + VP Sbjct: 241 VVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANSMTVPD 300 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G G+I+RTAG+ RTK EIKRD+EYL R+W+ +REL L S AP +YEEG+LIKR+IRDLY Sbjct: 301 GAGLIIRTAGSQRTKAEIKRDYEYLQRMWEQIRELTLKSTAPAKIYEEGDLIKRSIRDLY 360 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 K+I E+IV+GE GYR AKDFMK++MPS+A+ V+ Y + P++ R +E L+ + V Sbjct: 361 SKEIDEVIVAGEAGYRTAKDFMKMIMPSHAKNVKFYTEQLPLYARYQVEGYLNGMFNPTV 420 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 LPS GY++I TEALV+IDVNSGR+T+E IE TA +TNLEAA+E+ARQLRLRDLAGLI Sbjct: 421 QLPSGGYIVIGITEALVAIDVNSGRATKEGSIEQTATKTNLEAADEVARQLRLRDLAGLI 480 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDM+E++NN +VEK+ K+ LK DRAR+QVG IS FGL+EMSRQR+R +LE+TT++ Sbjct: 481 VIDFIDMDERRNNAAVEKRFKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEATTQM 540 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C++C G G +RS +VALSILR++EE ++ + +++ + +L+N KR I + E Sbjct: 541 CSHCHGTGLLRSDDNVALSILRALEEEGVRGRSKEVLIKAPISIANFLMNGKREHIADIE 600 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 AR+G+S+ + + + IEK +V S + D++ +A Sbjct: 601 ARYGMSVRIECDPTMVSPDYAIEKFKTATRVVPDAAPFVSSAVMMDDDEDDNAGIIVDAD 660 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 + + + E + D + R+RRR + + Sbjct: 661 VAEETNTNAETV-DGEDRPKRKRRRRRRRRGGGGGNADNQNGQNQNGDNAEGDAEAAPAE 719 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + T P + +E+ V + + +++ Sbjct: 720 AATDTPADKVAEDAPAPEAKPKRTRTRRKKAEPAAEDAVETPAEKPAEEVAEDKPAPKKR 779 Score = 51.5 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 11/155 (7%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 T ++ + + P +E + +EE ++R R Sbjct: 722 TDTPADKVAEDAPAPEAKPKRTRTRRKKAEPAAEDAVETPAEKPAEEVAEDKPAPKKRTR 781 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE-------- 688 R++ V + D+ + +P + A Sbjct: 782 RKKAEPKEEAVAEVDAKTPAAEAEPDAIEEKPKPKRRSRAKPKAEAAPVEAAEEVVAETP 841 Query: 689 ---NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + P PE ++ + ++ K+ WW Sbjct: 842 PEPKAEPKAEPKPAPEPKAETAPAEDKPKRKGWWS 876 >gi|119385690|ref|YP_916745.1| ribonuclease [Paracoccus denitrificans PD1222] gi|119376285|gb|ABL71049.1| RNAse E [Paracoccus denitrificans PD1222] Length = 869 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 343/754 (45%), Positives = 445/754 (59%), Gaps = 40/754 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLIDA+H EETRVVV+ +VEE DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MSKKMLIDATHSEETRVVVVDGTKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL---------------KESNIAQTDSEAVAD 105 YGGNRHGFL F EIHPDYYQIP +DR+ALL K + A A Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPAADRKALLEEERQAAAAEADEGEKPKRNPRRRKPAKAA 120 Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESI-------------------------IS 140 GD + +D + + ++ + Sbjct: 121 AAESGDAVLVSDEIAGMTVVDPSEGEAVPLDAPLAADTAEAAAPAAAADSAEDAPAEEAA 180 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 ++ + S E+ K R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYL Sbjct: 181 EDDGIESVAEEDMAEEISAPKKPRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYL 240 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGRY VLMPNT++G ISRKITN DRK LKEIA LEVP G G+I+RTAG+ RT+ E Sbjct: 241 SLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASELEVPEGAGLIIRTAGSQRTRTE 300 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 I+RD+EYLMRLW+ +R+L S+AP +YEEG+LIKR IRDLY K+I E++V GE+GYR Sbjct: 301 IRRDYEYLMRLWEQIRDLTFKSIAPAPIYEEGDLIKRTIRDLYSKEIDEVLVEGERGYRT 360 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 AKDFMK++MPS+A+ V+ Y D P++ R +E L + V L S GY++I TEALV Sbjct: 361 AKDFMKMIMPSHAKNVKHYTDAMPLYARYQVESYLGGMFNPVVQLKSGGYIVIGVTEALV 420 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVNSGR+T+E IEDTAL+TNLEAAEEIARQLRLRDLAGLIV+DFIDMEE+KNN +VE Sbjct: 421 AIDVNSGRATKEGSIEDTALKTNLEAAEEIARQLRLRDLAGLIVIDFIDMEERKNNAAVE 480 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 K+ K+ LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+A Sbjct: 481 KRFKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSLA 540 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 L+ILR++EE + + ++V V +L+N KR I EAR+G+S+ V L Sbjct: 541 LTILRAIEEEGTRKRSREVLVKAPVAVANFLMNAKREHIANIEARYGLSVRVEADPALIS 600 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + IEK V A + + +E + I ED ++ Sbjct: 601 PDYAIEKFKTATRNVPEVVSPVVSVDARLMAQIDDEEPAEEEVEEIADEPVEEDRAESGD 660 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E + R+RRRRR + + AG +D +++ D + Sbjct: 661 GENGSKRRRRRRRRRGGKNGEDEAPHAGDDADEVALETEEADQPAEVEVIVEAVESAPEP 720 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 E + + + P Sbjct: 721 VAEEAEKPRRRTRTRRRKADEPAEAVAEAGPAEG 754 >gi|254706878|ref|ZP_05168706.1| ribonuclease Rne/Rng domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261314343|ref|ZP_05953540.1| ribonuclease [Brucella pinnipedialis M163/99/10] gi|261303369|gb|EEY06866.1| ribonuclease [Brucella pinnipedialis M163/99/10] Length = 705 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 375/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYFI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 >gi|154253716|ref|YP_001414540.1| ribonuclease [Parvibaculum lavamentivorans DS-1] gi|154157666|gb|ABS64883.1| ribonuclease, Rne/Rng family [Parvibaculum lavamentivorans DS-1] Length = 863 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 350/696 (50%), Positives = 451/696 (64%), Gaps = 7/696 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KMLIDA+H EETRVVV+ NRVEE DFESE++KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MGKKMLIDAAHPEETRVVVVSGNRVEEFDFESENRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV------THGDVTI 114 YGGNRHGFL F EIHPDYYQIP +DR+ALLK+ + D+ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLKQQADEARREKEEEDEDDAEEAPSAKADGN 120 Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 + + + + E E+++S ED + + R Y IQEVI Sbjct: 121 GGQDAEDHGDDHSGDIERGETETVLSDETVESVGAEDAMEEAAPRKQRGNYRSYKIQEVI 180 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKIT DRK LK Sbjct: 181 KRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKG 240 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 IA L+VP GMG+I+RTAGA RTK EIKRD+EYL+R+W++VREL L S AP+LVYEEG+L Sbjct: 241 IAESLDVPEGMGLIVRTAGAKRTKAEIKRDYEYLLRMWESVRELTLKSTAPYLVYEEGSL 300 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 IKR+IRDLY KDI I + G++GYREAK FM++LMPS+A+ V+ Y++ P+F + GIE Q Sbjct: 301 IKRSIRDLYDKDIDTIQIEGDEGYREAKGFMRMLMPSHAKNVQPYKETQPLFQKFGIEQQ 360 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 LD++ + VTL S GY++IN TEALVSIDVNSGRST+E IE TAL+TNLEAAEEI RQ+ Sbjct: 361 LDAMLEPTVTLKSGGYIVINPTEALVSIDVNSGRSTKERNIEQTALKTNLEAAEEITRQM 420 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRDLAGL+V+DFIDM+E +NNR+VE+KLK+ LK DRAR+QVG IS+FGLLEMSRQR+RS Sbjct: 421 RLRDLAGLVVIDFIDMDENRNNRAVERKLKDCLKTDRARIQVGRISHFGLLEMSRQRMRS 480 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 VLE +T C +CKG G +RS S+AL +LR VE ++ A V + V +Y+LNQ Sbjct: 481 GVLEGSTVTCQHCKGTGLVRSVESMALHVLRGVEAEAIKGRAAAFTVKVPAVVAIYILNQ 540 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 KRA I++ E R+G S+ + L IE + + ++ D+ Sbjct: 541 KRAKILDVEERYGTSVYIEADATLTGSEHRIEPAEARALTRTRPAQGAINIESGYADEED 600 Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV- 653 E V + ++E+ E D+ + +RRR+RRR + Sbjct: 601 EPVIAETEDEADDEAEAAEASGDSADRNRADNAEGDGQRRRKRRRRKRKPDGERAEGETQ 660 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 Q +D + E + + E E+ Sbjct: 661 QDAQGRDEDGDEDGEETGEASEAQPGETSGTAEGED 696 >gi|254488723|ref|ZP_05101928.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. GAI101] gi|214045592|gb|EEB86230.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. GAI101] Length = 922 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 338/767 (44%), Positives = 457/767 (59%), Gaps = 59/767 (7%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT---------------- 108 RHGFL F EIHPDYYQIP +DR AL++E A D+ Sbjct: 61 RHGFLAFSEIHPDYYQIPVADRIALMEEERAYAEAQAAKEDEDEKPKRRTRARSRGKPRA 120 Query: 109 ----HGDVTIPNDHSLEEVAPIANFSQETEE----------------------------- 135 D T D ++++ + + EE Sbjct: 121 EDTVSDDATASKDADSDQISGMETVDLDDEEGSSPMERVAETPVEEPDEDVSDSDADDND 180 Query: 136 ---------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186 + S ++ + S +D K ++Y IQEV+K RQILL+Q+VK Sbjct: 181 DDDDRAPQGQDASSKDDSIESVADDDDHDDLRPARKPRPKRYKIQEVVKVRQILLIQVVK 240 Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246 EERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK LKEIA ++VP G G Sbjct: 241 EERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANEIKVPKGAG 300 Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 +I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP +YEEG+LIKR+IRDLY ++ Sbjct: 301 LIVRTAGAQRTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRE 360 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 I E+ V GE+GYR AKDFMK++MPS+A+ V++YE+ P+F R +E L + V LP Sbjct: 361 IDEVFVEGERGYRIAKDFMKMIMPSHAKNVKRYEETMPLFARYQVESYLSGMFNPTVQLP 420 Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 S GY++I TEALV+IDVNSGR+T+E IE TA +TNLEAA E+ARQLRLRDLAGLIV+D Sbjct: 421 SGGYIVIGVTEALVAIDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRDLAGLIVID 480 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDM+E++NN +VEK +K+ LK DRAR+Q+G IS FGL+EMSRQR+R ++E+TT+ C Sbjct: 481 FIDMDERRNNAAVEKMMKDKLKTDRARIQIGRISGFGLMEMSRQRLRPGMIEATTQPCHV 540 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G G IRS ++ALSILR +EE + + +++ + +L+NQKR I E R+ Sbjct: 541 CHGTGLIRSDDNLALSILREIEEEGTRKRSREVLITAPVGIANFLMNQKREHIAHIEGRY 600 Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G+S+ V L F IEK +V V S + + + + + ++ + + Sbjct: 601 GMSVRVEGDPTLVSPDFKIEKFKTATRVVVPVEHVVSVNASLMDEIDEQEAEAEDVTVDV 660 Query: 607 PKSESLE-DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 +++S + D + + +RRRRRR + A + + + DD Sbjct: 661 EEAKSTDTDATQGTSDTDGETDGEDKPKRRRRRRRRSRGGKANGDENGNGDNSGSDDGSS 720 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + D + + +E A + P P+ S + + Sbjct: 721 DDTKTDDEKSSDAVEAKADAPAGEDVKAAEPEEKPKRTRSRTRKPKV 767 >gi|149202496|ref|ZP_01879468.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035] gi|149143778|gb|EDM31812.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035] Length = 845 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 346/794 (43%), Positives = 449/794 (56%), Gaps = 79/794 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+QI GNIYLAKVTRVEPSLQAAFVD Sbjct: 6 MATKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQIAGNIYLAKVTRVEPSLQAAFVD 65 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD-------------- 106 YGGNRHGFL F EIHPDYYQIP +DR+AL+ E +D Sbjct: 66 YGGNRHGFLAFSEIHPDYYQIPVADREALMAEEEALANAQNDEDEDRPRRSSGGEGRSDG 125 Query: 107 ---------------------------VTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 V +++ LE+ E Sbjct: 126 RSEGRNSRSRSRSRSRTRAEKTQTDDAVATSEISGMETIDLEDETAATAEVPEATSPMER 185 Query: 140 SANNDVVSNVEDVKGGSPEDVPK------------------------------KFKRQYC 169 A V ++ + ED P+ R+Y Sbjct: 186 VAETPVEEPEDNGADEAGEDEPETDTRDHAAQDDEIESVAEEDDSEDIRPVRKPRARRYK 245 Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 IQEV+K RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN VDR Sbjct: 246 IQEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDR 305 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 K LKEIA ++VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP +Y Sbjct: 306 KKLKEIATEIDVPRGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELTLRSMAPAKIY 365 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 EEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ V+ Y D P+F R Sbjct: 366 EEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKHYVDQQPLFARF 425 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E L + V L S GY++I TEALV+IDVNSGR+T+E IE+TAL+TNLEAAEE Sbjct: 426 QVESYLSGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEE 485 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 +ARQLRLRDLAGLIV+DFIDM+E++NN SVEK+LK+ LK DRAR+QVG IS FGLLEMSR Sbjct: 486 VARQLRLRDLAGLIVIDFIDMDERRNNASVEKRLKDKLKTDRARIQVGRISGFGLLEMSR 545 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R ++E+TT+ C C G G IRS S+ALSILR +EE ++ + ++V + Sbjct: 546 QRLRPGMIEATTQPCPACHGTGLIRSDDSLALSILRQIEEEGVRRRSREVLVKCPVGIAN 605 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH-----KVGSD 584 YL+NQKR + + E R+G+S+ + L F +EK V S Sbjct: 606 YLMNQKRDHVAQIEGRYGLSVRIEGDPRLVSPDFTMEKFKTATRNVPEVPMAQFVSGTSA 665 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 D+ + + ++ ++S + + R+ RRR+ + + Sbjct: 666 LMDDIDDEVEDEIDEEVEAEAGDDAKSAPTTGGDGGDKPKKSRRRRSRRRKPKNGNGAER 725 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYME---PSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + G D + + +E E + PV E Sbjct: 726 NGEGTDEDREDDDAEASEGSEEQDSAVPAVAAEPEAPVEAPVEAPAEVTAEAEAPVVAEE 785 Query: 702 MESSNSSSDPIVKK 715 + P KK Sbjct: 786 QPKPKRTRAPRKKK 799 >gi|319408602|emb|CBI82257.1| ribonuclease E [Bartonella schoenbuchensis R1] Length = 864 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 376/745 (50%), Positives = 474/745 (63%), Gaps = 22/745 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A D D V Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKAAIDENQADDLVEEIKQNKKGSRKT 120 Query: 121 EEVAPIANFSQETEEESIISA---------------NNDVVSNVEDVKGGSPEDVPKKFK 165 ++ + S + E I + ++D+ + +K Sbjct: 121 KKSKNHSTLSVDNENNIISESIASDDGEEALDGNVCDDDIEMVGAEDALEELPTYQRKPV 180 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 DRK LKEI + L VP GMGVILRTAGA+RTK+EIKRD+EYLMRLW+ VR L L S AP Sbjct: 241 IQDRKRLKEIVKELAVPKGMGVILRTAGANRTKVEIKRDYEYLMRLWETVRTLTLKSTAP 300 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 +LVYEEGNLIKR+IRDLY KDI+EI+VSG+KGYREAKDFM++LMPS+A++V+ Y D PI Sbjct: 301 YLVYEEGNLIKRSIRDLYNKDINEILVSGDKGYREAKDFMRMLMPSHAKVVQPYRDHIPI 360 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R+ IE QLD + Q++V L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLE Sbjct: 361 FTRNNIEAQLDKMLQSKVALKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLE 420 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEEIARQLRLRDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+ Sbjct: 421 AAEEIARQLRLRDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKNDRARIQVGRISHFGLM 480 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQRIR SVLEST + C +C G G +RS+SS+AL ++RS+E+YLL + +NIIV T + Sbjct: 481 EMSRQRIRVSVLESTMQPCPHCAGTGNVRSESSIALHVMRSIEKYLLSNSQYNIIVRTSA 540 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 + LY+LN KR +V+ E RF ++I++ + + I KG+ + + + D Sbjct: 541 VIALYVLNHKRNILVDLETRFKLNISIEADDSVGAQHLVISKGTMAEKDHLSPLAIEDDD 600 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + D + P+ ++ ++ + + Sbjct: 601 KEEDEDAILMESELTHDEFPVENNQRRRRKNRQSELHDNFSTSSHKDDIQNNEDTRRRGR 660 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV-------S 698 G + N S Y EP LE + PV Sbjct: 661 RRGHRRGRRNQNNGFYQSRVPYAEPVGEFAKQALEEIKAAHRRYSIPAAEPVGFDEQNAD 720 Query: 699 TPEMESSNSSSDPIVKKTRWWKRRK 723 + ++ KK R + RK Sbjct: 721 AKHHVNVQQNASFKAKKNRNARPRK 745 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 37/162 (22%), Gaps = 8/162 (4%) Query: 563 FYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + I PV + Q S+ + K + Sbjct: 704 YSIPAAEPVGFDEQNADAKHHVNVQQNASFKAKKNRNARPRKASQGKKMPENDKSVTTST 763 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E + + ++ VS + + + + IT + E Sbjct: 764 PVEEKNTTNSIHKSKTKKENKPTREITEEVSTDTKKSTRQTRKKTITKKTAQITEVSEKE 823 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E P + SS + WWKR+ Sbjct: 824 PITKQAVEQVST------KPVVTSSVPEGGNKTGRIGWWKRK 859 >gi|329850505|ref|ZP_08265350.1| ribonuclease, Rne/Rng family domain protein [Asticcacaulis biprosthecum C19] gi|328840820|gb|EGF90391.1| ribonuclease, Rne/Rng family domain protein [Asticcacaulis biprosthecum C19] Length = 907 Score = 489 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 315/633 (49%), Positives = 417/633 (65%), Gaps = 24/633 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ MLIDA+H EETRVVVL +RVEE DFES +KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKTMLIDATHTEETRVVVLNGSRVEEFDFESHARKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ L+ E ++ A D Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREKLMAELAAQAQSAKDSAKD-------------- 106 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 N + + ++D + D + + R+Y IQEVIK RQIL Sbjct: 107 -------NGRDRDSGNNEDADDDDHHEDDGDDLPDEERRLRQHLIRRYKIQEVIKRRQIL 159 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK LK +A+ L+ Sbjct: 160 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAPDRKRLKAVAQSLD 219 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RTK EIKRD++YL+R+W+ +RE L S AP L+YEE +L+KRAIR Sbjct: 220 VPHGMGLIVRTAGAKRTKQEIKRDYDYLLRVWETIRETTLKSNAPALIYEEEDLVKRAIR 279 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ KD ++V G+ GY+ AKDFM+++MPS A+ ++ Y+ P+F R G+E + ++ Sbjct: 280 DMFDKDFDGVLVEGDDGYKSAKDFMRMIMPSQAKKIQLYKANAPLFARYGVEDLISKIYS 339 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSG+ST+E IE TAL+TN+EAAEE ARQ+RLRDLA Sbjct: 340 PVVPLKSGGYLVINQTEALVAIDVNSGKSTKERNIEATALKTNMEAAEEAARQMRLRDLA 399 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GL+V+DFIDM+E KNNRSVEKKLK++L +DRAR+Q+G IS FGL+E+SRQR R+ LE T Sbjct: 400 GLVVIDFIDMDEPKNNRSVEKKLKDALAEDRARIQMGKISGFGLMEISRQRRRTGFLEGT 459 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T C +C+G G IRS S ALS +R ++ +Q A I V + V LY+LN+K+ + Sbjct: 460 TVTCPHCEGMGRIRSIDSAALSAMRRIDMEAMQNGAGAITVKLPTAVALYILNEKQVHLA 519 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + +G+ +N+ I +L I + + T + ++D E + +D Sbjct: 520 KLRLEWGLKVNIEIDNDLGHTDLQIVRTVLATEVEFTP---PVRPEPIAFDPTPEEIAED 576 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 EAL + D +E S + R Sbjct: 577 EALEVDDEDVVASDEDGEDGAERSEPRADRADR 609 >gi|319404235|emb|CBI77828.1| ribonuclease E [Bartonella rochalimae ATCC BAA-1498] Length = 861 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 364/725 (50%), Positives = 466/725 (64%), Gaps = 12/725 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAF++ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A ++ A + Sbjct: 61 YGGNRHGFLTFAEIHPDYYQIPIADRLALLEEEKAAINENYEDAPIEETTSNKKSFKKNK 120 Query: 121 EE----VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176 + + EE + +NND+ + P+K R+Y IQEVIK Sbjct: 121 SNNVIATNIENDVIADDVEEILDFSNNDIEMVGAEDVLEELPAYPRKQGRKYKIQEVIKR 180 Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN DRK LK+I Sbjct: 181 RQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKDIV 240 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 + L+VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L++EE NLIK Sbjct: 241 KELDVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLKSTAPCLIHEESNLIK 300 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R+IRDLY K+I+EI+VSG++GYREAKDFM++L+PS+A++V+ Y +P PIF + IE+QLD Sbjct: 301 RSIRDLYNKNINEILVSGDQGYREAKDFMRMLIPSHAKVVQPYRNPTPIFTHNDIEIQLD 360 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 + +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAEE+ARQLRL Sbjct: 361 KMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAEEVARQLRL 420 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+EMSRQRIR SV Sbjct: 421 RDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKHDRARIQVGHISHFGLMEMSRQRIRVSV 480 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 LESTT+ C +C G G IRS+SS+AL ++RS+EEYLL + +NIIV T + LY+LN KR Sbjct: 481 LESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPVTIALYVLNHKR 540 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596 +V E RFG+SIN+ + + F I KGS + S D + + Sbjct: 541 HILVNLETRFGLSINIEADDSVGTQHFTISKGSIAKEA--------PLSSTVIEDNDTKE 592 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + + + N E + G I + Sbjct: 593 TENSILIKSKTVDNNKQRQHKNQQMESNNGSIFPATHKNDTPNAEDTRRRGRRRGRRGGR 652 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 N ++S + + ++P T + + + Sbjct: 653 SNQSNNSQFRISYAEPVGDFAKKALEEIKAEHRQHYNVPAAETVGFSKDSYYKNDLSGIQ 712 Query: 717 RWWKR 721 + R Sbjct: 713 KNKTR 717 >gi|148259405|ref|YP_001233532.1| ribonuclease [Acidiphilium cryptum JF-5] gi|146401086|gb|ABQ29613.1| RNAse E [Acidiphilium cryptum JF-5] Length = 906 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 326/749 (43%), Positives = 437/749 (58%), Gaps = 45/749 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M MLIDASH EETRVVVL +NR+++ D E+ +KQIKGNIYLAKV RVEPSLQAAFV+ Sbjct: 1 MTKTMLIDASHAEETRVVVLDNNRLDDFDIEAADRKQIKGNIYLAKVIRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT---------------------- 98 YGGNRHGFL F EIHPDYYQIP +DRQ LL+ Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRQKLLELEAEEARRRVEAEDAEDEQEAALAAPRPP 120 Query: 99 ------------------DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 D+EA A G+ + + + E E + Sbjct: 121 RVTEIAIGDAPPDAEGQVDAEAAAAPAEVGEAEADSGPEASGAGAGEDRAGEGAEATATP 180 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 + D + E + R Y IQEVI RQI+LVQ+VKEERG+KGAA+TTY+ Sbjct: 181 PEQVGGDDGVDGAEEAQERRRLRALRSYKIQEVIHRRQIMLVQVVKEERGSKGAALTTYI 240 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGR+SVLMPN+ G +SRKIT+ DR+ LKE LE+P GMG+I+RTAGA+R K E Sbjct: 241 SLAGRFSVLMPNSPNGGGVSRKITSLADRRRLKEAIAELEIPQGMGMIVRTAGANRPKPE 300 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 IKRD EYL+RLWD++RE L S+AP LVYEE +LIKR IRD+Y +D+ ++++ GE G+R Sbjct: 301 IKRDCEYLLRLWDDIRERTLASIAPALVYEEASLIKRTIRDVYTRDVDQVLIEGEDGFRS 360 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 A+DFM++LMP++ + V+Q+ + P+F + +E LD + Q V L S GY++INQTEALV Sbjct: 361 ARDFMRMLMPTHVKKVQQWTERQPLFAKHNVEQMLDQMFQPTVQLKSGGYLVINQTEALV 420 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVNSGR+TRE IEDTAL+TNLEAAEE+ARQLRLRDLAGLIVVDFIDME +K+N VE Sbjct: 421 AIDVNSGRATRERNIEDTALRTNLEAAEEVARQLRLRDLAGLIVVDFIDMETRKHNAMVE 480 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++LK++LK DRAR+QVG+IS+FGLLEMSRQR+R S+ E+ C +C+G G++RS +S A Sbjct: 481 RRLKDALKNDRARIQVGSISHFGLLEMSRQRLRPSLAETMLIACPHCQGVGHVRSTASTA 540 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 L++LR++E+ + A ++VH DV LY+ N KRA I EARFG+ + V + Sbjct: 541 LAVLRAIEDEAARQ-AAELLVHLTPDVALYIFNHKRAQIAATEARFGMKVVFVADGTV-P 598 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 F IEK A + A + + E + A + + Sbjct: 599 ATFKIEKVKAHAARPQETPAPTFRAPAETEEVEAEQQGDEVATEDAAGNAGKAADEVERR 658 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR AG+ ++ S N + + +E Sbjct: 659 RRRRRRRRGGRREDLVSAPTGEQPEIAGIPAEFESRMNDVLPTAARADAAEAPAPEVTME 718 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSS 709 E P P++ ++ ++ Sbjct: 719 P---AVAETAPAVPEPAKEPKVVETSPAA 744 >gi|330993176|ref|ZP_08317113.1| Ribonuclease E [Gluconacetobacter sp. SXCC-1] gi|329759727|gb|EGG76234.1| Ribonuclease E [Gluconacetobacter sp. SXCC-1] Length = 996 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 299/626 (47%), Positives = 399/626 (63%), Gaps = 19/626 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +MLID +H EETRVVV+ + +E+ D E+ KKQ+KGNIYLAKV RVEPSLQAAFVD Sbjct: 1 MSKRMLIDTTHAEETRVVVMDGHHLEDYDVEAASKKQLKGNIYLAKVIRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ LL + E + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREKLLALQEEERRAEEERRARDDEEEDAPAAATAE 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + ET V + + +F R Y IQEVI+ RQIL Sbjct: 121 EGEEAAEDDEPET-----------VGGENDTGDEAQAQRRIARFLRNYKIQEVIRRRQIL 169 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G +SRKIT+ DR+ L++I L+ Sbjct: 170 LVQVVKEERGNKGAALTTYVSLAGRYCVLMPNSLRGGGVSRKITSVADRRRLRDIITELQ 229 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P GM +I+RTAGA R + EI RD EYL+RLWD++R+ L SVAP L+YEE +LIKRAIR Sbjct: 230 IPRGMAMIVRTAGAQRPRAEIMRDCEYLLRLWDDIRQHTLESVAPALIYEEASLIKRAIR 289 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLH 359 D+Y +++SEI++ GE G++ A++FM++LMP A ++ + +F +E LDS+ Sbjct: 290 DIYTREVSEILIDGEPGWKSAREFMRMLMPQNAQKVRLWQDHEQTLFSHYKVEGLLDSML 349 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++INQTEALV+IDVNSGR+TRE IE+TAL+TNLEAAEE+ARQLRLRDL Sbjct: 350 SPSVQLKSGGYLVINQTEALVAIDVNSGRATRERNIEETALRTNLEAAEEVARQLRLRDL 409 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 AGLIV+DFIDME +K+N VE+KLK++L+ DRAR+QVG IS+FGLLEMSRQR+R S+ ES Sbjct: 410 AGLIVIDFIDMESRKHNGMVERKLKDALRNDRARIQVGQISHFGLLEMSRQRLRPSIAES 469 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 C +C+G G +R S AL +LR++E+ +Q A I V ++ Y+LN KR+ + Sbjct: 470 AFMPCPHCQGTGIVRGIESSALHVLRAIEDEGMQRKAAEISVAVAPEIAFYILNNKRSWL 529 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E EAR + + L + IE+ P A + + V + Sbjct: 530 GEIEARHKMHVVFAPDAALQPQDCTIERVRPQTARFEAPVIEHAPA-------EGSHVRE 582 Query: 600 DEALLPIPKSESLEDIQDNIVSEEST 625 + P +E+ D E+ Sbjct: 583 IQIQAEPPAAEATPDEHATGTEEDED 608 >gi|296114863|ref|ZP_06833511.1| ribonuclease, Rne/Rng family [Gluconacetobacter hansenii ATCC 23769] gi|295978569|gb|EFG85299.1| ribonuclease, Rne/Rng family [Gluconacetobacter hansenii ATCC 23769] Length = 974 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 320/710 (45%), Positives = 428/710 (60%), Gaps = 19/710 (2%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLID +H EETRVVV+ NR+E+ D E+ KKQ+KGNIYLAKV RVEPSLQAAFVDYGGN Sbjct: 1 MLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP +DR+ LL + EA D D + A Sbjct: 61 RHGFLAFSEIHPDYYQIPVADREKLLALQEEERRAEEARNARED--DEKAEGDDGATDDA 118 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 P + E + ND E + + +F R Y IQEVI+ RQILLVQ+ Sbjct: 119 PPREGDADEAEPETVGGENDTGDEPEAQRRIA------RFLRNYKIQEVIRRRQILLVQV 172 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 VKEERGNKGAA+TTY+SLAGRY VLMPN+ +G +SRKIT+ DR+ L++I L++P G Sbjct: 173 VKEERGNKGAALTTYVSLAGRYCVLMPNSLRGGGVSRKITSVADRRRLRDIISELQIPHG 232 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304 M +I+RTAGA R + EI RD EYL+RLWD++RE L SVAP L+YEE +LIKRAIRD+Y Sbjct: 233 MAMIVRTAGAQRPRAEIMRDCEYLLRLWDDIREHTLKSVAPALIYEEASLIKRAIRDIYT 292 Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +++ EI++ GE G++ A++FM++LMP A ++ + +F +E LDS+ V Sbjct: 293 REVGEIMIDGEAGWKSAREFMRMLMPQNAQKVRLWQDHGQTLFSHYRVEGLLDSMLSPSV 352 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY++INQTEALV+IDVNSGR+T+E IE+TAL+TNLEAA+E+ARQLRLRDLAGLI Sbjct: 353 QLRSGGYLVINQTEALVAIDVNSGRATKERNIEETALRTNLEAADEVARQLRLRDLAGLI 412 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDME +K+N VE++LKE+L+ DRAR+QVG IS+FGLLEMSRQR+R S+ EST Sbjct: 413 VIDFIDMESRKHNGMVERRLKEALRNDRARIQVGHISHFGLLEMSRQRLRPSIAESTFMP 472 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +C+G G IR S AL +LR++E+ +Q A I VH ++ LY+LN KRA + E E Sbjct: 473 CPHCEGTGIIRGVESSALHVLRAIEDEGMQRRAAEIAVHVAPEIALYILNNKRAWLHEIE 532 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI--------- 594 R + + L IE+ A ++ + + Sbjct: 533 ERHKMHVTFAADSTLHAAESRIERTRAQTAQFEPAPTPAITAEPEAARADATGVREIPIH 592 Query: 595 -ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 E E P P S +D + R+RRRR R A +++ Sbjct: 593 SEPPATTEEGAPTPTDASPVVDEDAASGTDHRRRRRRRRRRGGTNREAEQQGVETAETEI 652 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 +++ + + P+D +++ + PV PE Sbjct: 653 TALPEPVVEIGYKGPTPADPFGDAIIDIFDVIEQTTTLPASAPVIEPEAP 702 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 32/154 (20%), Gaps = 14/154 (9%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 V + + + K ++ E + E Sbjct: 835 VEKADEPVAEEKPRRRRTATTRTAAAKAPARRRTSTAKAVKDDAAEVTEATAPVVEEKAE 894 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + RR RR+ + + + + + Sbjct: 895 EKPKARRVTRRKKVEVEAEPAATPTTEAAPTAEEKAPARKATRTRRKKVETAPAPEATPA 954 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E D P ++T WWKR Sbjct: 955 EPVDAEAAPAPK--------------RRTGWWKR 974 >gi|319407243|emb|CBI80882.1| ribonuclease E [Bartonella sp. 1-1C] Length = 860 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 369/733 (50%), Positives = 474/733 (64%), Gaps = 17/733 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAF++ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A ++ A + Sbjct: 61 YGGNRHGFLTFAEIHPDYYQIPIADRLALLEEEKAAINENYEDAPIEETTSNKKSFKKNK 120 Query: 121 EEV----APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176 + + EE + +NND+ + P+K R+Y IQEVIK Sbjct: 121 SNDVIATNIENDVIADDVEEILDFSNNDIEMVGAEDVLEELPAYPRKQGRKYKIQEVIKR 180 Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN DRK LK+I Sbjct: 181 RQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKDIV 240 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 + L+VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L++EE NLIK Sbjct: 241 KELDVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLKSTAPCLIHEESNLIK 300 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R+IRDLY K+I+EI+VSG++GYREAKDFM++L+PS+A++V+ Y +P PIF + IE+QLD Sbjct: 301 RSIRDLYNKNINEILVSGDQGYREAKDFMRMLIPSHAKVVQPYRNPTPIFTHNDIEIQLD 360 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 + +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAEE+ARQLRL Sbjct: 361 KMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAEEVARQLRL 420 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+EMSRQRIR SV Sbjct: 421 RDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKHDRARIQVGHISHFGLMEMSRQRIRVSV 480 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 LESTT+ C +C G G IRS+SS+AL ++RS+EEYLL + +NIIV T + LY+LN KR Sbjct: 481 LESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPVAIALYVLNHKR 540 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGS 583 +V E RFG+SIN+ + + F I KG + Sbjct: 541 HILVNLETRFGLSINIEADDSVGTQHFTISKGSIAKEASLSSTVIEDNDTKETENSILIK 600 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 + + Q E+ ++ N+ G R RR R + + Sbjct: 601 SKTVDNNKRRQRKNQQMESDNGSIFPADHKNDTPNVEDTRRRGRRRGRRGGRSNQSNNSP 660 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 + +N + + + + +I + + SI T E Sbjct: 661 FRVSYAEPVGDFAKNALAEIKEEQRQYYNIPATETVRFNKDSHYKKDVSSIQKNETREDR 720 Query: 704 SSNSSSDPIVKKT 716 ++ S VK + Sbjct: 721 TAIKSKKRNVKSS 733 >gi|163795152|ref|ZP_02189120.1| Ribonuclease E and G [alpha proteobacterium BAL199] gi|159179550|gb|EDP64079.1| Ribonuclease E and G [alpha proteobacterium BAL199] Length = 910 Score = 486 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 325/720 (45%), Positives = 444/720 (61%), Gaps = 12/720 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLID++H EETRVVV+ NR+E+ DFE+ KKQ+KGNIYLA++TRVEPSLQAAFV+ Sbjct: 1 MTKRMLIDSTHPEETRVVVVDGNRLEDFDFETATKKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYY+IP DR+ALL+E ++ D Sbjct: 61 YGGNRHGFLAFSEIHPDYYRIPIEDREALLREERARASEEMEDDHDEPD---------VS 111 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE + + + + V K R+Y IQEV+ RQI+ Sbjct: 112 EEPSAPETDEAASGGDGDAAEAQARPETVGGDPVEDVRRKRKSVNRRYKIQEVVARRQIM 171 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G +SRKIT+ DRK LK+I GL+ Sbjct: 172 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKITHTGDRKRLKQIVEGLD 231 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GM VI+RTAG+ RTK EIKRD+EYL+RLWD++RE L S AP L+YEE NLIKR+IR Sbjct: 232 VPDGMAVIVRTAGSERTKTEIKRDYEYLLRLWDDIRETTLKSSAPCLIYEEANLIKRSIR 291 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI-VRQYEDPHPIFFRSGIEVQLDSLH 359 DLY +DI E+ V GE+GYR AKDFMK L+PS+A+ + P+ R +E QLD++H Sbjct: 292 DLYARDIDEVQVEGEEGYRIAKDFMKALVPSHAKRVQPYRDPHTPLLHRYQVESQLDAIH 351 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY+++NQTEALV+IDVNSGR+T E IE+TAL+TNLEAA+E+ARQLRLRDL Sbjct: 352 SPSVELKSGGYIVLNQTEALVAIDVNSGRATSERNIEETALKTNLEAADEVARQLRLRDL 411 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 AGLIV+DFIDMEE +N +VE+++KE++K DRAR+Q+G IS+FGL+E+SRQR+R S+ E+ Sbjct: 412 AGLIVIDFIDMEESRNQHAVERRMKEAMKSDRARIQIGRISHFGLMELSRQRLRPSLFEA 471 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 +T+VC +CKG G+IRS S AL LR +EE ++ + I+V+ + + LY+LN KR+ + Sbjct: 472 STQVCPHCKGTGHIRSVESAALHALRVIEEEGMRNRSAEIVVYIPASIALYILNHKRSRL 531 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E E R+G + + L IE+ P A + S ++ + V + Sbjct: 532 AEIEQRYGCQVLLEQDDTLIPPDHRIERPRPKTAEERAAFQNAVASVPVVIEEEDDVVDE 591 Query: 600 DE--ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 + ++S S++ G R RRRRR RR + + D ++ ++ Sbjct: 592 ADDGEENEDQPAQSKRASAPEQASDDERGARRPRRRRRGGRRRSGEGSDERPAAETATPD 651 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + ++ + ++ + S +S +T Sbjct: 652 GDVGEADTADRPAGENEERSVESEEDEATRKRRRRGRRGGRRRARRSDEDTSVQSGDETG 711 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 1/147 (0%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + D A S + + + T + +R Sbjct: 764 DAPELEAVDVAAASAAPADVVTEEPVKKAKPRSRAKAKPAAKPADKADETVAEKPKRGAP 823 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 RRR+ A ++ V++V D+ D + + ++ ++ + Sbjct: 824 RRRKKAEPAEESATVAEVPVEAAPATDATDHAITGEPGRDQSIAQDVEVPAASAAVPAND 883 Query: 696 PVSTPEMESSNSSSDPIVK-KTRWWKR 721 ++T + + P+ K K WW+R Sbjct: 884 AIATAPLIEVKTIDAPVEKPKKGWWRR 910 >gi|209964911|ref|YP_002297826.1| ribonuclease, Rne [Rhodospirillum centenum SW] gi|209958377|gb|ACI99013.1| ribonuclease, Rne [Rhodospirillum centenum SW] Length = 1035 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 331/691 (47%), Positives = 418/691 (60%), Gaps = 60/691 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +ML+DA+H EETRVVV+ NR+EELDFE +KQ+KGNIYLAKV RVEPSLQAAFV+ Sbjct: 1 MAKRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDV-------- 112 YGGNRHGFL F EIHPDYY+IP +DR+ALL+E + V + Sbjct: 61 YGGNRHGFLAFSEIHPDYYRIPVADREALLREQEREYEAGDREPASVEQVEDAAAGIEET 120 Query: 113 -------------------TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153 D S E P + S + Sbjct: 121 SAGAVPVDEIGGAAPSLMDEGTPDGSSAEDGPEGESPLSAGDPEDGSDFAGEGAEDAGPD 180 Query: 154 GGSPEDVPKKFK---------------------------------RQYCIQEVIKNRQIL 180 G + E + + Y IQEVIK RQIL Sbjct: 181 GRATELRHSNGREGRRERRAAAAADGGETVEEDTEEERRRRPRPLKSYKIQEVIKRRQIL 240 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KEERGNKGAA+TTYLSL GRY VLMPNT +G ISRKITNP DRK +KE+ GL+ Sbjct: 241 LVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITNPADRKRMKELLEGLD 300 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GM VILRTAG R+K EIKRD EYLMRLWD++REL L SVAP L+YEE NLIKR+IR Sbjct: 301 VPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVAPALIYEEANLIKRSIR 360 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLY DI E+IV GE+GYR AKDFM++LMPS+A+ V+ Y+D P+F R +E ++++ Sbjct: 361 DLYASDIDEVIVEGEQGYRTAKDFMRMLMPSHAKKVQPYKDDIPLFHRFQVEGAIETMFD 420 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSGRST+E IE+TAL+TNLEAAEEIARQLRLRDLA Sbjct: 421 PVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNLEAAEEIARQLRLRDLA 480 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDMEE +NN SVEK+LKE++K DRAR+Q+G IS FGLLE+SRQR+R S+ E Sbjct: 481 GLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGLLELSRQRLRPSLQEIN 540 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C +C G G +RS S AL++LR++EE ++ + I V + +VLY+LNQKR ++ Sbjct: 541 FERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAAASLVLYILNQKRESLT 600 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 E R+G+ + + L +E+ Q + + S Y + + + Sbjct: 601 AIERRYGLRVYLAADDSLTPPAHRLERLRARQPGDDLPVAQTTVSAEKVYAETDRALEVE 660 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 EA E E+ R Sbjct: 661 EAEEAEELEEETEESAATAPQTAEERSQGDR 691 >gi|326402627|ref|YP_004282708.1| ribonuclease E [Acidiphilium multivorum AIU301] gi|325049488|dbj|BAJ79826.1| ribonuclease E [Acidiphilium multivorum AIU301] Length = 906 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 326/742 (43%), Positives = 433/742 (58%), Gaps = 45/742 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M MLIDASH EETRVVVL +NR+++ D E+ +KQIKGNIYLAKV RVEPSLQAAFV+ Sbjct: 1 MTKTMLIDASHAEETRVVVLDNNRLDDFDIEAADRKQIKGNIYLAKVIRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT---------------------- 98 YGGNRHGFL F EIHPDYYQIP +DRQ LL+ Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRQKLLELEAEEARRRVEAEDAEDEQEAALAAPRPP 120 Query: 99 ------------------DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 D+EA A G+ + + + E E + Sbjct: 121 RVTEIAIGDAPPDAEGQVDAEAAAAPAEVGEAEADSGPEASGAGAGEDRAGEGAEATATP 180 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 + D + E + R Y IQEVI RQI+LVQ+VKEERG+KGAA+TTY+ Sbjct: 181 PEQVGGDDGVDGAEEAQERRRLRALRSYKIQEVIHRRQIMLVQVVKEERGSKGAALTTYI 240 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGR+SVLMPN+ G +SRKIT+ DR+ LKE LE+P GMG+I+RTAGA+R K E Sbjct: 241 SLAGRFSVLMPNSPNGGGVSRKITSLADRRRLKEAIAELEIPQGMGMIVRTAGANRPKPE 300 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 IKRD EYL+RLWD++RE L S+AP LVYEE +LIKR IRD+Y +D+ ++++ GE G+R Sbjct: 301 IKRDCEYLLRLWDDIRERTLASIAPALVYEEASLIKRTIRDVYTRDVDQVLIEGEDGFRS 360 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 A+DFM++LMP++ + V+Q+ + P+F + +E LD + Q V L S GY++INQTEALV Sbjct: 361 ARDFMRMLMPTHVKKVQQWTERQPLFAKHNVEQMLDQMFQPTVQLKSGGYLVINQTEALV 420 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVNSGR+TRE IEDTAL+TNLEAAEE+ARQLRLRDLAGLIVVDFIDME +K+N VE Sbjct: 421 AIDVNSGRATRERNIEDTALRTNLEAAEEVARQLRLRDLAGLIVVDFIDMETRKHNAMVE 480 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++LK++LK DRAR+QVG+IS+FGLLEMSRQR+R S+ E+ C +C+G G++RS +S A Sbjct: 481 RRLKDALKNDRARIQVGSISHFGLLEMSRQRLRPSLAETMLIACPHCQGVGHVRSTASTA 540 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 L++LR++E+ + A ++VH DV LY+ N KRA I EARFG+ + V + Sbjct: 541 LAVLRAIEDEAARQ-AAELLVHLTPDVALYIFNHKRAQIAATEARFGMKVVFVADGTV-P 598 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 F IEK A + A + + E + A + + Sbjct: 599 ATFKIEKVKAHAARPQETPAPTFRAPAETEEVEAEQQGDEVATEDAAGNAGKAADEVERR 658 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR AG+ ++ S N + + +E Sbjct: 659 RRRRRRRRGGRREDLVSAPTGEQPEIAGIPAEFESRMNDVLPTAARADAAEAPAPEVTME 718 Query: 681 NGAHGFTENYDVSIPPVSTPEM 702 + P PE+ Sbjct: 719 P---AVADTAPAVPEPAKEPEV 737 >gi|319405672|emb|CBI79295.1| Ribonuclease E [Bartonella sp. AR 15-3] Length = 865 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 373/738 (50%), Positives = 474/738 (64%), Gaps = 22/738 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAF++ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND--- 117 YGGNRHGFL F EIHPDYYQIP +DR ALL+E ++ A Sbjct: 61 YGGNRHGFLTFAEIHPDYYQIPVADRLALLEEEKAVINENYEDAPIEETTLNKKRLKKNK 120 Query: 118 ------HSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171 ++E + EE + +N+D+ + P+K RQY IQ Sbjct: 121 NNKVIATNIENDLISEEIIADDVEEILDFSNDDIEMVGAEDALEELPAYPRKQGRQYKIQ 180 Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 EVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN DRK Sbjct: 181 EVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKR 240 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 LK+I + LEVP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L++EE Sbjct: 241 LKDIVKELEVPRGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLKSTAPCLIHEE 300 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 NLIKR+IRDLY K+I+EI+VSG++GYREAKDFM++L+PS+A++V+ Y D PIF I Sbjct: 301 SNLIKRSIRDLYDKNINEILVSGDQGYREAKDFMRMLIPSHAKVVQPYRDTTPIFTHHNI 360 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E QLD + +V L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAEEIA Sbjct: 361 ETQLDKMLHPQVNLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAEEIA 420 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRDLAGLIV+DFIDM E +N + VEKKLK+ LK+DRAR+QVG IS+FGL+EMSRQR Sbjct: 421 RQLRLRDLAGLIVIDFIDMLENRNIKLVEKKLKDCLKQDRARIQVGHISHFGLMEMSRQR 480 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 IR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL + HNIIV T + LY+ Sbjct: 481 IRVSVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQHNIIVRTPLTIALYV 540 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV-----------QALVNTGHK 580 LN KR +V E RFG+SIN+ + + F I K S + Sbjct: 541 LNHKRHILVNLETRFGLSINIEADDSVGTQHFAISKSSIAKGDPFSSTVIEDNDIKEIEN 600 Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 + + + S D D E++ R+R RR RR Sbjct: 601 TVLIKNKTVENNKQRQRKKHQIESNNDSISSATDKDDAPNGEDTHRRGRRRGRRGGRRNQ 660 Query: 641 ATDHHDAGVVSDV--SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + ++ ++ + +++ Y + I + +N+ S Sbjct: 661 SNNYQPRVSYAEPVGDFAKKALEEIKAEYHQYHKIPAAETVGFNEDSHYKNHLSSTQKNE 720 Query: 699 TPEMESSNSSSDPIVKKT 716 E ++ S VK + Sbjct: 721 IIESSTAIKSKKRNVKSS 738 >gi|89069855|ref|ZP_01157189.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus HTCC2516] gi|89044531|gb|EAR50650.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus HTCC2516] Length = 860 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 342/748 (45%), Positives = 444/748 (59%), Gaps = 57/748 (7%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ N+VEE DFE++ K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDATHAEETRVVVVDGNKVEEFDFEAQAKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKES----NIAQTDSEAVADD-------------- 106 RHGFL F EIHPDYYQIP +DR+ALL E + + EA Sbjct: 61 RHGFLAFSEIHPDYYQIPVADREALLAEEKAYAESQRAEDEAEEKPAPKKRRSRSRAKPK 120 Query: 107 --------------------------------------VTHGDVTIPNDHSLEEVAPIAN 128 GD + ++ E Sbjct: 121 AADTETADPVATGEVEGGDAASDESASEIKGMETIDLGEGEGDEGLSPMETVPETPVETP 180 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 + E + D+ S ++ V K R+Y IQEV+K RQI+LVQ+VKEE Sbjct: 181 AADEDASGDEPDPSADIESVADEDDTDDVRPVRKPRPRRYKIQEVVKVRQIMLVQVVKEE 240 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 RGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK LKEIA ++VP G G+I Sbjct: 241 RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIAGAMDVPEGAGLI 300 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 +RTAG+ RTK EIKRD+EYL RLW+ +REL L S+AP +YEEGNLIKR+IRDLY K+I Sbjct: 301 IRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLKSIAPAPIYEEGNLIKRSIRDLYSKEID 360 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 E+IV GE GYR AKDFMK++MPS+A+ V+ Y+D P+F R +E L+S+ V LPS Sbjct: 361 EVIVEGEAGYRTAKDFMKMIMPSHAKNVKNYQDSMPLFARHQVESYLNSMFNPTVQLPSG 420 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 GY++I TEALV+IDVNSGR+T+E IE TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFI Sbjct: 421 GYIVIGVTEALVAIDVNSGRATKEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFI 480 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488 DM+E+KNN +VEK++KE LK DRAR+QVG IS FGLLEMSRQR+R +LE+TT+ C++C Sbjct: 481 DMDERKNNAAVEKRMKEKLKTDRARIQVGRISGFGLLEMSRQRLRPGMLEATTQPCSHCH 540 Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 G G +RS +VALSILR +EE ++ + ++V + +L+NQKR I EAR+G+ Sbjct: 541 GTGLLRSDDNVALSILRQIEEEGVRGRSKEVLVRAPVSIANFLINQKREHIAGIEARYGL 600 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 S+ V + + F +EK +V V S+ S D+ V + A + Sbjct: 601 SVRVEGDVTMISPDFALEKFKTATRVVAEAAPVVVSSETASMDEEEAVVEETAAEEDEAQ 660 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ-NVIDDSFDMY 667 E+ R+RRRR+ D + + + ++ Sbjct: 661 EAQETPDTGESGDEKPKKRRRRRRRRKGGNGEGNGEGDEAQAASAENAEAKPEAETAPAE 720 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIP 695 P + T + Sbjct: 721 PAPEGEGEAEEAKPKKRTRTRGGARARK 748 >gi|49475635|ref|YP_033676.1| ribonuclease E [Bartonella henselae str. Houston-1] gi|49238442|emb|CAF27670.1| Ribonuclease E [Bartonella henselae str. Houston-1] Length = 880 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 364/694 (52%), Positives = 459/694 (66%), Gaps = 32/694 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A + + + Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPLADRLALLEEEEKAAVGESHIDVLIEETNKNKKRSRKT 120 Query: 121 EEVAPIANFSQETEEE---------------SIISANNDVVSNVEDVKGGSPEDVPKKFK 165 ++ + + + +++D+ + +K Sbjct: 121 KKDKKNSTMAADVVNNITFDAITIDDAEEAFDANVSHDDIEMVGAEDVREELPTYQRKQG 180 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYL RLWD VR L L S AP Sbjct: 241 AQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLTRLWDTVRTLTLKSTAP 300 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 LV+EE NLIKR+IRDLY K+I+EI+VSG++GYREAKDFM++LMPS+A++V+ Y DP PI Sbjct: 301 CLVHEESNLIKRSIRDLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPI 360 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R+ IE+QLD + +V+L S GY++INQTEALV+IDVNSGRST+E +E TALQTNLE Sbjct: 361 FARNNIEIQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKELSVEKTALQTNLE 420 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEEIARQLRLRDLAGLIV+DFIDM E++N R VEKKLK+ LK DRAR+QVG IS+FGLL Sbjct: 421 AAEEIARQLRLRDLAGLIVIDFIDMLEERNVRMVEKKLKDCLKNDRARIQVGHISHFGLL 480 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQRIR SVLESTT C +C G G +RS+SS+AL ++RS+EEYLL HNI V T Sbjct: 481 EMSRQRIRISVLESTTHPCPHCSGTGNVRSESSIALHVMRSIEEYLLHNPKHNITVRTPV 540 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 Y+LN KR +V EARF ++I++ + + I KG+ + + Sbjct: 541 ATAFYVLNHKRNILVNLEARFKLNISIEADDSIGTQHLIISKGTIAETI---------SQ 591 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 ++ + + V ++ L +SE +ED ++ ++RRR+ R+ D Sbjct: 592 PPLIFENDHKEVIENTLLRESRESEFIEDN--------TSIETNQKRRRKNRQDEIHDSS 643 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 + V + N Sbjct: 644 LSTVHKKDDIVNEDSRRRGRRRGRRGGRRNQENN 677 >gi|256061017|ref|ZP_05451174.1| ribonuclease Rne/Rng domain-containing protein [Brucella neotomae 5K33] gi|261325017|ref|ZP_05964214.1| ribonuclease [Brucella neotomae 5K33] gi|261300997|gb|EEY04494.1| ribonuclease [Brucella neotomae 5K33] Length = 891 Score = 481 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 383/763 (50%), Positives = 474/763 (62%), Gaps = 65/763 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + ++ +P+ + E+ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQP----------MVYEDDIEDPEIPVEEDETE 650 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 E+ + ++ + E R+ G + +++ D Sbjct: 651 EEARTDVQAGEERSEE-------NDRKRRRRRRRRGGRERDGRDLSAQEEAVSEDASEED 703 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E + D N D + Sbjct: 704 NETDQANEAVSSASMSEEDRRKKRRRGRRGGRKNRREDDNRAR 746 Score = 44.2 bits (102), Expect = 0.078, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + V +E++ + ++ + + E R+ R Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799 Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R++ +A ++ + + +P + Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P ST + +S+ S D K++ WW+++ Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888 >gi|240850605|ref|YP_002972005.1| ribonuclease E [Bartonella grahamii as4aup] gi|240267728|gb|ACS51316.1| ribonuclease E [Bartonella grahamii as4aup] Length = 876 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 369/692 (53%), Positives = 461/692 (66%), Gaps = 37/692 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEH+KQ+KGNIYLA++TRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A +V Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKAAVGENSVDSFTEEATKNKKRSRRT 120 Query: 121 EEVAPIANFSQETEEESIIS---------------ANNDVVSNVEDVKGGSPEDVPKKFK 165 ++ + + E + + +++ + +K Sbjct: 121 KKNGKNNVIAADIENDITSETTIIDNTEEALNADISYDEIEMVGAEDIREELPIYQRKQG 180 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP Sbjct: 241 VQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAP 300 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 LV+EE NLIKR+IRDLY K+ISEI+VSG++GYREAKDFM++LMPS+A++V+ Y DP PI Sbjct: 301 CLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPTPI 360 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R+ IE+QLD + Q +V+L S GY++INQTEALV+IDVNSGRST+E +E TALQTNLE Sbjct: 361 FARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLE 420 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQLRLRDLAGLIV+DFIDM E++N + VEKKLK+ LK DRAR+QVG IS+FGLL Sbjct: 421 AAEEVARQLRLRDLAGLIVIDFIDMLEERNVKLVEKKLKDCLKNDRARIQVGHISHFGLL 480 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL + +NIIV T Sbjct: 481 EMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPV 540 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 LY+LN KR +V E RF ++I++ + + I KGS + Sbjct: 541 ATALYVLNHKRNILVNLETRFKLNISIEADDSIGTQHLVISKGSIAE-----------SI 589 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 PS + + +D + E+ I N ++RRR+ R TDH Sbjct: 590 SRPSLEDVNKQEIEDSVFIESESIENPSPIGTN-----------QKRRRKNRHDEITDHS 638 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + V ++ N N + Sbjct: 639 LSNVHKKEDTLSNDSYRRGRRRGRRGGRRNQD 670 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 98/363 (26%), Gaps = 15/363 (4%) Query: 361 TEVTLPSRGYVIINQTEALVSIDV-NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 E L + Y II +T ++ V N R+ + L ++EA + I Q + Sbjct: 523 EEYLLHNSQYNIIVRTPVATALYVLNHKRNILVNLETRFKLNISIEADDSIGTQHLVISK 582 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 + E N + +E + + + S G + R++ R E Sbjct: 583 GSIAESISRPSLEDVNKQEIEDSVFIESES------IENPSPIGTNQKRRRKNR--HDEI 634 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + S S R + + + + + Sbjct: 635 TDHSLSNVHKKEDTLSNDSYRRGRRRGRRGGRRNQDNSFHQIRIPY--AEPVGDFAKQAL 692 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E +A V + + K+ + + V + Sbjct: 693 AEIKAAHRKH-RVSPAKSFELEETKNNTQALDIQQQGESKKIDTSIKPKKRKTRSSKVVE 751 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 ++ L ++ + + S + ++ + + S S+ Sbjct: 752 NQLSLDNDQNVVEQKSLEEKPKTSSVRKAKTKKADKSIHK---VEDKTFENSKKSTRGTR 808 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 S + + + + ++ P + SS + ++ WW Sbjct: 809 KKSSSKETTQIQKVLEKETIIEMEEVVETSPSQIEKTINQPVVVSSTPNDSSKTERVGWW 868 Query: 720 KRR 722 KRR Sbjct: 869 KRR 871 >gi|17987340|ref|NP_539974.1| ribonuclease E / zinc metalloprotease [Brucella melitensis bv. 1 str. 16M] gi|225852424|ref|YP_002732657.1| ribonuclease, Rne/Rng family protein [Brucella melitensis ATCC 23457] gi|256044584|ref|ZP_05447488.1| ribonuclease Rne/Rng domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256264078|ref|ZP_05466610.1| ribonuclease E and G [Brucella melitensis bv. 2 str. 63/9] gi|260563937|ref|ZP_05834423.1| ribonuclease E and G [Brucella melitensis bv. 1 str. 16M] gi|265991009|ref|ZP_06103566.1| ribonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|17983023|gb|AAL52238.1| ribonuclease e / zinc metalloprotease [Brucella melitensis bv. 1 str. 16M] gi|225640789|gb|ACO00703.1| ribonuclease, Rne/Rng family protein [Brucella melitensis ATCC 23457] gi|260153953|gb|EEW89045.1| ribonuclease E and G [Brucella melitensis bv. 1 str. 16M] gi|263001793|gb|EEZ14368.1| ribonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|263094281|gb|EEZ18142.1| ribonuclease E and G [Brucella melitensis bv. 2 str. 63/9] gi|326408935|gb|ADZ66000.1| ribonuclease, Rne/Rng family protein [Brucella melitensis M28] gi|326538649|gb|ADZ86864.1| ribonuclease, Rne/Rng family protein [Brucella melitensis M5-90] Length = 891 Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 374/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 44.6 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + V +E++ + ++ + + E R+ R Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799 Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R++ +A ++ + + +P + Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P ST + +S+ S D K++ WW+++ Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888 >gi|163868350|ref|YP_001609559.1| ribonuclease E [Bartonella tribocorum CIP 105476] gi|161018006|emb|CAK01564.1| ribonuclease E [Bartonella tribocorum CIP 105476] Length = 871 Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 371/740 (50%), Positives = 475/740 (64%), Gaps = 46/740 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVIHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKAAVGENPADVFTEETTKNKKRSRRT 120 Query: 121 EEVAPIANFSQETEEE---------------SIISANNDVVSNVEDVKGGSPEDVPKKFK 165 ++ A + + E + + ++ +++ + +K Sbjct: 121 KKNAKNNVIAADVENDIASESVTIDHTEEILNADASYDEIEMVGAEDIREELPTYQRKQG 180 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 RQY IQEVIK RQILLVQ++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN Sbjct: 181 RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP Sbjct: 241 VQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAP 300 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 LV+EE NLIKR+IRDLY K+ISEI+VSG++GYREAKDFM++LMPS+A++V+ Y DP PI Sbjct: 301 CLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPTPI 360 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R+ IE+QLD + Q +V+L S GY++INQTEALV+IDVNSGRST+E +E TALQTNLE Sbjct: 361 FARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLE 420 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQLRLRDLAGLIV+DFIDM E++N R VEKKLK+ LK DRAR+QVG IS+FGLL Sbjct: 421 AAEEVARQLRLRDLAGLIVIDFIDMLEERNVRLVEKKLKDCLKNDRARIQVGHISHFGLL 480 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL + +NIIV T Sbjct: 481 EMSRQRIRISVLESTTQPCPHCAGTGSIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPV 540 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 LY+LN KR +V EARF ++I++ + + I +G+ +++ Sbjct: 541 ATALYVLNHKRNILVNLEARFKLNISIEADDSIGTQHLVISRGTIAESISQ--------- 591 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 S++ + + +D + E+ + N ++RRR+ R TDH Sbjct: 592 --SSFEDDNKQEIEDSVFIKSESLENSPPTETN-----------QKRRRKNRHDEMTDHS 638 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL---------LENGAHGFTENYDVSIPP 696 + + ++ + N + E + Sbjct: 639 LSAIDKKEDTLSDDSYRRGRRRGRRGGRRNQDNSFHQIRVPYAEPVGDFAKQALAEIKAA 698 Query: 697 VSTPEMESSNSSSDPIVKKT 716 + S+ SS +K Sbjct: 699 HRKRRVPSAKSSKLEEIKND 718 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 1/151 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 V +A D +++ + + + N+ E+ T ++ Sbjct: 716 KNDTQALAVQQQDEATKVDTSVKTKKRKTRSSKAVDNNLSLENDQNVAEEKPTNSSVRKI 775 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + ++ + + D + S + S T + E+ Sbjct: 776 KTKKAGKSVHEGEDKTPENGKKSTRRTRKKSSSKETTEIQKTLEAVSIMEVGEVIESSPS 835 Query: 693 SIPP-VSTPEMESSNSSSDPIVKKTRWWKRR 722 I ++ P + SS S+ P + WWKRR Sbjct: 836 QIEKTINQPIVISSESNDAPKTARIGWWKRR 866 >gi|256113458|ref|ZP_05454299.1| ribonuclease Rne/Rng domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265994846|ref|ZP_06107403.1| ribonuclease [Brucella melitensis bv. 3 str. Ether] gi|262765959|gb|EEZ11748.1| ribonuclease [Brucella melitensis bv. 3 str. Ether] Length = 891 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 373/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLI+VDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIIVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 44.6 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + V +E++ + ++ + + E R+ R Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799 Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R++ +A ++ + + +P + Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P ST + +S+ S D K++ WW+++ Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888 >gi|49474199|ref|YP_032241.1| ribonuclease E [Bartonella quintana str. Toulouse] gi|49239703|emb|CAF26079.1| Ribonuclease E [Bartonella quintana str. Toulouse] Length = 875 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 376/746 (50%), Positives = 466/746 (62%), Gaps = 24/746 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ N++EELDFESEHKKQ+KGNIYLA++TRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A + + Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKASGGENHSDALIEETNKNKKRSRKT 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK---------------KFK 165 ++ + + E I A + S + + + Sbjct: 121 KKDQKNKIMAADVENAIISDAITTDDAEEAFDSDISHDYIEMVGTEDVREELPTYQRRQG 180 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 RQY IQEVIK RQILLVQI+KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN Sbjct: 181 RQYKIQEVIKRRQILLVQIIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 240 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 DRK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYL RLWD VR L L S AP Sbjct: 241 IQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLTRLWDTVRTLTLKSTAP 300 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 LV+EE NLIKR+IRDLY K+I+EI+VSG++GYREAKDFM++LMPS+A++V+ Y D PI Sbjct: 301 CLVHEESNLIKRSIRDLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDLIPI 360 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R+ IE+QLD + +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLE Sbjct: 361 FVRNNIEIQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLE 420 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEEIARQLRLRDLAGLIV+DFIDM E +N R VEKKLK+ LK DRAR+QVG IS+FGLL Sbjct: 421 AAEEIARQLRLRDLAGLIVIDFIDMLEDRNVRMVEKKLKDCLKNDRARIQVGHISHFGLL 480 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL +NIIV T Sbjct: 481 EMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNPQYNIIVRTPV 540 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 LY+LN KR +V EARF ++I++ + + I KG+ A +DS Sbjct: 541 ATALYVLNHKRNILVNLEARFKLNISIEADDNIGTQHLIISKGTIAAAFSQPPLVFENDS 600 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + D + E P+ + +++ ++ Sbjct: 601 KKEIKDAIVTESISTEDKTPVETNRRRRRKNRQDERNDNSLSTVYKKDDTLNDDSRRRGR 660 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES- 704 G + +N Y EP L ++ P+ E+ES Sbjct: 661 HRGRRGGRGNQENNSYQICIPYAEPVGDFAKQTLVEIKAAHRKHRVPIAKPIEFEEVESD 720 Query: 705 --------SNSSSDPIVKKTRWWKRR 722 + V K + K R Sbjct: 721 TQHLGIQQDETVKVDTVAKPKTRKVR 746 >gi|225627401|ref|ZP_03785438.1| ribonuclease, Rne/Rng family protein [Brucella ceti str. Cudo] gi|260168641|ref|ZP_05755452.1| ribonuclease, Rne/Rng domain protein [Brucella sp. F5/99] gi|261758115|ref|ZP_06001824.1| ribonuclease E and G [Brucella sp. F5/99] gi|225617406|gb|EEH14451.1| ribonuclease, Rne/Rng family protein [Brucella ceti str. Cudo] gi|261738099|gb|EEY26095.1| ribonuclease E and G [Brucella sp. F5/99] Length = 891 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 374/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+ TYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALATYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 44.6 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 1/149 (0%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + V +E++ + ++ + + E R+ R Sbjct: 740 EDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKTR 799 Query: 635 RRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R++ +A ++ + + +P + Sbjct: 800 TRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETI 859 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P ST + +S+ S D K++ WW+++ Sbjct: 860 AEPKSTEPVVTSSESEDRKPKRSGWWQKK 888 >gi|319898906|ref|YP_004158999.1| ribonuclease E [Bartonella clarridgeiae 73] gi|319402870|emb|CBI76421.1| ribonuclease E [Bartonella clarridgeiae 73] Length = 804 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 353/584 (60%), Positives = 432/584 (73%), Gaps = 12/584 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRVVV+ DN++EELDFESEHKKQ+KGNIYLA++TR+EPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHDNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTD------------SEAVADDVT 108 YGGNRHGFL F EIHPDYYQIP +DR ALL+E + ++ Sbjct: 61 YGGNRHGFLTFAEIHPDYYQIPVADRLALLEEEKAVINESYGDDPIEETIQNKKSLRKTK 120 Query: 109 HGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 +E + EE +N+D+ + +K QY Sbjct: 121 KDKSNSFMATDIENDIISETIIADDAEEIPDFSNDDIEMVGAEDALEELPTYRRKQGCQY 180 Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 IQEVIK RQILL+Q++KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN D Sbjct: 181 KIQEVIKRRQILLIQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQD 240 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 RK LKEI + L VP GMGVILRTAGA+RTK EIKRD+EYLMRLWD +R L L S AP L+ Sbjct: 241 RKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRALTLKSTAPCLI 300 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 +EE NLIKR+IRDLY KDI+EI+V+G++GYREAKDFM++LMPS+A++V+ Y +P PIF Sbjct: 301 HEESNLIKRSIRDLYSKDINEILVAGDQGYREAKDFMRMLMPSHAKVVQPYRNPIPIFAH 360 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 + IE QLD + +V+L S GY++INQTEALV+IDVNSGRST+EH +E TALQTNLEAAE Sbjct: 361 NDIETQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAE 420 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 EIARQLRLRDLAGLIV+DFIDM E +N + VEKKLK+ LK DRAR+QVG IS+FGL+EMS Sbjct: 421 EIARQLRLRDLAGLIVIDFIDMLETRNIKLVEKKLKDCLKNDRARIQVGHISHFGLMEMS 480 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 RQRIR SVLESTT+ C +C G G IRS+SS+AL ++RS+EEYLL+ + +NIIV T Sbjct: 481 RQRIRVSVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLRNSQYNIIVRTSVATA 540 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 LY+LN KR +V E RFG+SIN+ + + I KGS + Sbjct: 541 LYVLNHKRNILVNLETRFGLSINIEADDSIGTQHLAISKGSIAK 584 >gi|306840410|ref|ZP_07473173.1| ribonuclease, Rne/Rng family [Brucella sp. BO2] gi|306289610|gb|EFM60819.1| ribonuclease, Rne/Rng family [Brucella sp. BO2] Length = 922 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKNDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDVISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 1/131 (0%) Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 K + + A E+ E++ E+ RK R R++ A A Sbjct: 790 KPEKPARKPRARKTAKTEEAAEEVIAAEAEEKPEKPARKTRARKKAVDEAPATEAAAPAE 849 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + + + ++ + V+ P + P + SS S Sbjct: 850 EAVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAEAQVETVAEPKSTEPVVTSSESEEQK 909 Query: 712 IVKKTRWWKRR 722 K++ WW+++ Sbjct: 910 -PKRSGWWQKK 919 >gi|254719015|ref|ZP_05180826.1| ribonuclease Rne/Rng domain-containing protein [Brucella sp. 83/13] gi|265984005|ref|ZP_06096740.1| ribonuclease [Brucella sp. 83/13] gi|306840098|ref|ZP_07472884.1| ribonuclease, Rne/Rng family [Brucella sp. NF 2653] gi|264662597|gb|EEZ32858.1| ribonuclease [Brucella sp. 83/13] gi|306404826|gb|EFM61119.1| ribonuclease, Rne/Rng family [Brucella sp. NF 2653] Length = 922 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 375/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRGERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRHRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDVISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 44.6 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEVPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + + +P Sbjct: 808 EAAEAVIAAEAEEKPEKPARKTRARKKAVEEAPADEAAAPAEEAVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAEAQVETVAEPKSTEPVVTSSESEDQKPKRSGWWQKK 919 >gi|288957372|ref|YP_003447713.1| ribonuclease E [Azospirillum sp. B510] gi|288909680|dbj|BAI71169.1| ribonuclease E [Azospirillum sp. B510] Length = 1047 Score = 477 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 304/623 (48%), Positives = 400/623 (64%), Gaps = 31/623 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +ML+DA+H EETRV V+ NR+EELDFE +KQ+KGNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MAKRMLVDATHPEETRVAVVSGNRLEELDFEIASRKQLKGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDS--------------EAVADD 106 YGGNRHGFL F EIHPDYY+IP +DR+ALL E + + E + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYRIPMADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPE 120 Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV----------------E 150 + + E + A + E++ + Sbjct: 121 QVVEEWSPMPSPIAAEASDEAGDEENGGEDAAEEGETGEERAAPGAAAQPAEAPDMVGGD 180 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + + + R Y IQEV+K RQ++LVQ+ KEERGNKGAA+TTYLSL GRY VLM Sbjct: 181 EDEEAETQRRRSRPLRSYKIQEVVKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVLM 240 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PNT +G ISRKITNP DRK LKEI L++P GM VILRTAG R+K EIKRD EYL+R Sbjct: 241 PNTGRGGGISRKITNPADRKRLKEILSDLDIPDGMAVILRTAGLERSKPEIKRDLEYLLR 300 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LWD++RE L S AP L+YEE NLIKR+IRDLY DI EI V GE G+R A++FM +LMP Sbjct: 301 LWDDIREQTLKSSAPCLIYEEANLIKRSIRDLYSNDIDEIWVEGEAGFRTAREFMDMLMP 360 Query: 331 SYA-RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 ++ R+ + P+F R +E Q+D++H V L S GY++IN TEALVSIDVNSG+S Sbjct: 361 GHSQRVQLYRDSQIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGKS 420 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TRE IE+TA +TNLEAA+E+ARQLRLRDLAGLIV+DFIDMEE +NN +VE+++KE++K Sbjct: 421 TRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRMKEAMKN 480 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLE+SRQR+R S+LE+ + C +C G G +RS S +L +LR++EE Sbjct: 481 DRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVVRSVESASLHVLRAIEE 540 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ + I ++ + + LY+LNQKR + + E R S+ V L +E+ Sbjct: 541 EGIRKRSAEISIYVPTSIALYILNQKRGELAKIEERHAFSVMVQADDSLIAPDHRLERNK 600 Query: 570 PVQALVNTGHKVGSDSQAPSYDK 592 + A + Sbjct: 601 ARLPDEDGPLVSADRVMAETDRA 623 >gi|328543668|ref|YP_004303777.1| ribonuclease E [polymorphum gilvum SL003B-26A1] gi|326413412|gb|ADZ70475.1| Ribonuclease E [Polymorphum gilvum SL003B-26A1] Length = 823 Score = 477 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 370/671 (55%), Positives = 454/671 (67%), Gaps = 3/671 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDAAHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL + + A + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALLD--DERDEEERQEAAEAKAAARRKVSAPKA 118 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + N + + V S + + + +RQY IQEVIK RQ+L Sbjct: 119 DAGENGDNGENGENGDEEDDDEDHVESVGAEDAMEEVPERRPRQRRQYKIQEVIKRRQVL 178 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT +G ISRKIT P DRK LK+IA LE Sbjct: 179 LVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITQPTDRKRLKKIASELE 238 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMGVILRTAGASRTK EIKRDFEYLMRLW+NVR+L L S AP LVYEEG+LIKR+IR Sbjct: 239 VPDGMGVILRTAGASRTKAEIKRDFEYLMRLWENVRDLTLKSSAPCLVYEEGSLIKRSIR 298 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLY KDI E++V+G++GYREAKDFM++LMPS+A+ V+ Y D PIF + G+E QLD++ Sbjct: 299 DLYNKDIDEVLVAGDEGYREAKDFMRMLMPSHAKNVQPYRDATPIFTKFGVEPQLDAMFS 358 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 VTL S GY++INQTEALVSIDVNSG+STREH IEDTALQTNLEAAEE+ RQLRLRDLA Sbjct: 359 PHVTLKSGGYIVINQTEALVSIDVNSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLA 418 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDMEE KNNR+VE+KLK+ LK DRAR+QVG IS+FGLLEMSRQRIR+ VLES+ Sbjct: 419 GLIVIDFIDMEENKNNRTVERKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRTGVLESS 478 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T VC +C G+G IRS SVAL +LRS+E++LL+ HN+IV T + LY+LNQKR + Sbjct: 479 TSVCPHCHGSGMIRSVESVALHVLRSLEDFLLKGVTHNVIVRTTTAAALYILNQKRRNLA 538 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQA-LVNTGHKVGSDSQAPSYDKNIECVWQ 599 + EARFG+ I V L + + +E+ S + V V D+ + +E V + Sbjct: 539 DLEARFGLEIAVQADEMLNGQHYVLERSSLIDRDKVPAPAIVQPDTVVLEEIEEVEEVEE 598 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + E + + R + + Sbjct: 599 VDEEGDAEERAQDEGERRRRRRRKRKRTPDGAGSTERAAQAVGGSDAEQASGAEDDDETD 658 Query: 660 IDDSFDMYMEP 670 + S EP Sbjct: 659 EETSEQAGEEP 669 >gi|46201699|ref|ZP_00054508.2| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum MS-1] Length = 836 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 316/671 (47%), Positives = 420/671 (62%), Gaps = 20/671 (2%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ R+EELD E+ K+Q+KGNIYLAKV RVEPSLQAAFV+YGGN Sbjct: 1 MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIA--QTDSEAVADDVTHGDVTIPNDHSLEE 122 RHGFL F EIHPDY+QIP +DRQALL + + D G+ + + E+ Sbjct: 61 RHGFLAFSEIHPDYFQIPVADRQALLAAQRAEVMREATNDRDDAEPVGEGHLAAEAVAEQ 120 Query: 123 VAPIANFSQETEE--------------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 +E ++ S V V E + R Y Sbjct: 121 TDGSTVEDAPSETGENGENGENGESGSDNGRSQRKRNVETVGGDDDVENERRRARLLRNY 180 Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G +SRKI + D Sbjct: 181 KIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATD 240 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 R+ LK IA +++P GM VI+RTAG+ R+K EIKRD+EYL+R+WD+VREL L S AP LV Sbjct: 241 RRRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALV 300 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI-VRQYEDPHPIFF 347 YEE +LIKR+IRDLY +DI E++V G++GYR AKD+M++L PS+A+ + P+F Sbjct: 301 YEEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPYKDPVMPMFH 360 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 R +E QLD++H V L S GY++I+QTEALV+IDVNSGR+T+E IE+TAL+TN+EAA Sbjct: 361 RYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAA 420 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 +E+ARQLRLRDLAGLIV+DFIDMEE +NN +VE++LKE+LK DRAR+QVG IS FGLLE+ Sbjct: 421 DEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARIQVGKISAFGLLEL 480 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 SRQR+R S+ E+T C +C G G +RS S A+ ILR++EE ++ + + V+ S + Sbjct: 481 SRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEVTVYVSSAI 540 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 LY+LNQKR+ + E R+ + + L F ++K S A Sbjct: 541 ALYILNQKRSALAAIEERYEFDVFLSGDDTLIPPAFRMDKVKAEFRPDEPARTAISMDDA 600 Query: 588 ---PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 P + + ++ + E +D E+ R+RRR Sbjct: 601 VHRPPAEPEADEAEPEDEEEVEARPERAPRARDERPREDRGEEDPDSEAGRKRRRRRRRR 660 Query: 645 HDAGVVSDVSS 655 G + Sbjct: 661 RKPGDDRPEQA 671 >gi|148556749|ref|YP_001264331.1| RNAse E [Sphingomonas wittichii RW1] gi|148501939|gb|ABQ70193.1| RNAse E [Sphingomonas wittichii RW1] Length = 880 Score = 475 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 337/714 (47%), Positives = 426/714 (59%), Gaps = 11/714 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLIDA H EETRV V++ NR+EE DFES +KQ+KGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MTTRMLIDARHREETRVAVVQGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP DR+ALL+E + EA+ D Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEEALRAREAEHDDDGEEIEDD 120 Query: 121 EEVAPIANFSQETEEES---IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177 + E E + V +D + +R+Y IQ+VI+ R Sbjct: 121 GHDHHDDHDHDEDGEGGEERPRARRESVGGGSDDGAVENLRQRRMNLRRRYKIQDVIRRR 180 Query: 178 QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIAR 237 Q+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK I Sbjct: 181 QVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIMA 240 Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 L +P MG I+RTAG RTK EIKRDF+YL RLWD +RE L S AP L+Y + +LIKR Sbjct: 241 ELNLPKTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLGSQAPALIYGDSDLIKR 300 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 AIRD+Y +DI E++V GE+GYR+A+ FMKLLMPS+A+ V Y D P+F R G+E QL + Sbjct: 301 AIRDIYNRDIDEVVVEGEEGYRQARAFMKLLMPSHAKKVGLYADAVPLFQRFGVEDQLAA 360 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 ++Q V L S GY++IN TEALVSID+NSGRSTREH IE TA TNLEAA EIARQLRLR Sbjct: 361 MYQPIVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAHEIARQLRLR 420 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 D+AGLIV+DFIDME N R VEK +KE+LK DRAR+QVG IS+FGL EMSRQR+R+ VL Sbjct: 421 DMAGLIVIDFIDMENNSNIRKVEKAMKEALKNDRARIQVGRISSFGLFEMSRQRLRTGVL 480 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E++T+ C +C+G G IR+ SS LS LR +E+ + +++ + Y+LN+KRA Sbjct: 481 EASTRQCPHCEGTGLIRTASSAGLSALRMLEDEAARGRGSRLLLRASQEAAFYVLNRKRA 540 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 + E E R+GV I +V L +E G P + ++ IE Sbjct: 541 ELAEIEERYGVVIEIVSDGTLEGARMSVEAGGPPPSHAPRLPAPLPIEADDDIEEEIEDE 600 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 ++E E E N R R + + A +AG + Sbjct: 601 EEEEIAAEDEGQEDGERGDGNRRRRRRRRRRGGRGRDQDGQGEAGQADEAGETDEADEPS 660 Query: 658 NVIDDSFDMYMEPSD--------ITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 +++ + GA E + + P+S P E Sbjct: 661 EEAEEAAAEDGSAEPRGRRRRGRRSGRRRSGEGAETEGEAIEQAEAPLSEPVAE 714 >gi|148560585|ref|YP_001258889.1| ribonuclease Rne/Rng domain-containing protein [Brucella ovis ATCC 25840] gi|148371842|gb|ABQ61821.1| ribonuclease, Rne/Rng domain protein [Brucella ovis ATCC 25840] Length = 891 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 374/664 (56%), Positives = 455/664 (68%), Gaps = 46/664 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL------------KESNIAQTDSEAVADDVT 108 YGGNRHGFL F EIHPDYYQIP +DR ALL ++ A++D D Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 109 HGDVTIPNDHSLEEVAPIANFSQETEEE-------------------------------- 136 + + E A A+ E Sbjct: 121 RRRGGRRDGQNGEAQANDADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDNGD 180 Query: 137 --SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194 + + + V S + + +RQY IQEVIK RQILLVQ+VKEERGNKGA Sbjct: 181 DDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNKGA 240 Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254 A+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTAGA Sbjct: 241 ALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTAGA 300 Query: 255 SRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314 +RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+VSG Sbjct: 301 NRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILVSG 360 Query: 315 EKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIIN 374 E GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+IIN Sbjct: 361 ENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLIIN 420 Query: 375 QTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434 QTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEEK+ Sbjct: 421 QTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEEKR 480 Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494 NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ R Sbjct: 481 NNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGHTR 540 Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 S SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 SDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISIDA 600 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + ++ F I+KG+P V + D I + ++ E+ Sbjct: 601 DESVGNQHFVIDKGAPSTCPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAGEE 660 Query: 615 IQDN 618 + Sbjct: 661 RSEE 664 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 35/105 (33%) Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 +EE ++ R R++ +A ++ + + +P Sbjct: 784 TAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDV 843 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 844 AEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 888 >gi|254710013|ref|ZP_05171824.1| ribonuclease Rne/Rng domain-containing protein [Brucella pinnipedialis B2/94] gi|254714015|ref|ZP_05175826.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti M644/93/1] gi|254716927|ref|ZP_05178738.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti M13/05/1] gi|256031508|ref|ZP_05445122.1| ribonuclease Rne/Rng domain-containing protein [Brucella pinnipedialis M292/94/1] gi|256159633|ref|ZP_05457395.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti M490/95/1] gi|256254913|ref|ZP_05460449.1| ribonuclease Rne/Rng domain-containing protein [Brucella ceti B1/94] gi|256369340|ref|YP_003106848.1| ribonuclease, Rne/Rng domain protein [Brucella microti CCM 4915] gi|261218733|ref|ZP_05933014.1| ribonuclease [Brucella ceti M13/05/1] gi|261222095|ref|ZP_05936376.1| ribonuclease [Brucella ceti B1/94] gi|261317561|ref|ZP_05956758.1| ribonuclease [Brucella pinnipedialis B2/94] gi|261321769|ref|ZP_05960966.1| ribonuclease [Brucella ceti M644/93/1] gi|265988595|ref|ZP_06101152.1| ribonuclease [Brucella pinnipedialis M292/94/1] gi|265998060|ref|ZP_06110617.1| ribonuclease [Brucella ceti M490/95/1] gi|255999500|gb|ACU47899.1| ribonuclease, Rne/Rng domain protein [Brucella microti CCM 4915] gi|260920679|gb|EEX87332.1| ribonuclease [Brucella ceti B1/94] gi|260923822|gb|EEX90390.1| ribonuclease [Brucella ceti M13/05/1] gi|261294459|gb|EEX97955.1| ribonuclease [Brucella ceti M644/93/1] gi|261296784|gb|EEY00281.1| ribonuclease [Brucella pinnipedialis B2/94] gi|262552528|gb|EEZ08518.1| ribonuclease [Brucella ceti M490/95/1] gi|264660792|gb|EEZ31053.1| ribonuclease [Brucella pinnipedialis M292/94/1] Length = 922 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 52.7 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919 >gi|294852266|ref|ZP_06792939.1| ribonuclease Rne/Rng domain-containing protein [Brucella sp. NVSL 07-0026] gi|294820855|gb|EFG37854.1| ribonuclease Rne/Rng domain-containing protein [Brucella sp. NVSL 07-0026] Length = 922 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 374/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLV++VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVRVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYHDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 52.7 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919 >gi|239831791|ref|ZP_04680120.1| ribonuclease, Rne/Rng family [Ochrobactrum intermedium LMG 3301] gi|239824058|gb|EEQ95626.1| ribonuclease, Rne/Rng family [Ochrobactrum intermedium LMG 3301] Length = 931 Score = 474 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 376/750 (50%), Positives = 467/750 (62%), Gaps = 50/750 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + + + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSERSERNDRND 120 Query: 121 EEVAPIANFSQETEEESIISANNDV----------------------------------- 145 ++ + + +D Sbjct: 121 RSRRNRRRGRRDGQNGDAQANASDNGLPAAEPVGPAFENYVPGTPAMALSQKSDVISEAL 180 Query: 146 ---------------VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190 S + + +RQY IQEVIK RQILLVQ+VKEERG Sbjct: 181 DNGDEDDIEHEEDMVESVGSEDALEELPTHARTNRRQYNIQEVIKRRQILLVQVVKEERG 240 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250 NKGAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILR Sbjct: 241 NKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILR 300 Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310 TAGA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISEI Sbjct: 301 TAGANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDISEI 360 Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 +VSGE GYREAKDFM++LMPS+A++V+ Y + PIF R+G+E QLD + +VTL S GY Sbjct: 361 LVSGENGYREAKDFMRMLMPSHAKVVQPYREQVPIFTRNGVEAQLDRMLLPQVTLKSGGY 420 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 +IINQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDM Sbjct: 421 LIINQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDM 480 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 EEK+NNR+VEKK+K+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G Sbjct: 481 EEKRNNRAVEKKMKDCLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGT 540 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 G+IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV+I Sbjct: 541 GHIRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPASSALYVLNHKRQLLADLEGRFGVAI 600 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++ + + F I+KG+P + + V +DEA Sbjct: 601 SIDADESVGYQHFVIDKGAPSTRPITQPPVQPMAYIEDDIEDPEIPVDEDEAEEETKADV 660 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + + + R+R R R + + D+ + + Sbjct: 661 QASEERGEEGDRKRRRRRRRRGGRDREGQEQSAKSDSVSEESSDEDDDADESQQTSSNAS 720 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + P + Sbjct: 721 LSEEDRRKKRRRGRRGGRKNRRDDEPRARK 750 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 58/178 (32%), Gaps = 8/178 (4%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 V E + ++ V + + A + +E V +++ P K Sbjct: 751 VPDPEFVGYTPVLPVKIEETVVEEIAAVAVEPAAEAAETPAPAVEPVAEEKPAKPARKPR 810 Query: 611 SLEDIQDNIVSEEST------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + +EE + R+ R R++ + V + + + Sbjct: 811 ARKSAKTEDAAEEVVAAEAEEKPAKPARKTRARKKAVEEAPAEPVAVEATDEPEAEAEKP 870 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + +E+ + ++ P + + +S+ S + K+ WW+++ Sbjct: 871 KRRTRRAAAKPAAEVEDTVAIEADVATIAEPEKNAEPVVTSSESEEQKPKRAGWWQKK 928 >gi|295689556|ref|YP_003593249.1| ribonuclease, Rne/Rng family [Caulobacter segnis ATCC 21756] gi|295431459|gb|ADG10631.1| ribonuclease, Rne/Rng family [Caulobacter segnis ATCC 21756] Length = 907 Score = 474 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 315/584 (53%), Positives = 410/584 (70%), Gaps = 24/584 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLIDA+H EETRVVV+ RVEE DFES+ +KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL+++ + D Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDD-------------------- 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 PI+ + ++E ++ + + + ED ++ R+Y IQEVI+ RQI+ Sbjct: 101 ---TPISRRATGGDDEDDVNGEDTAIDDDEDDVEEELARRKRRLMRKYKIQEVIRRRQIM 157 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKIT DRK LK + + L+ Sbjct: 158 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLD 217 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+N+RE L+S+AP L+YEE +L+KRAIR Sbjct: 218 VPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIR 277 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y KD+ I V G+ GY+EA+DFM++LMPS A+ V Y DP P+F ++ IE L ++ Sbjct: 278 DMYDKDLDGIWVEGDAGYKEARDFMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYS 337 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSG++TRE IE TAL+TN EAAEE ARQLRLRDLA Sbjct: 338 PVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLA 397 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM+E KNNR+VEK LK++LK DRAR+Q+G IS FGL+E+SRQR R+ VLE T Sbjct: 398 GLIVIDFIDMDEAKNNRTVEKVLKDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGT 457 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T VC +C+G G +RS S AL+ LR+VE L+ + ++I+ V LY+LN+KRA + Sbjct: 458 THVCEHCEGTGRVRSVESSALAALRAVEVEALKG-SGSVILKVSRSVGLYILNEKRAYLQ 516 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 G+ + VV+ L IE+ + + + Sbjct: 517 RLLETHGLFVTVVVDDSLHAADQEIERTELGERIAVAPAPYVDE 560 >gi|62289855|ref|YP_221648.1| ribonuclease Rne/Rng domain-containing protein [Brucella abortus bv. 1 str. 9-941] gi|82699781|ref|YP_414355.1| ribonuclease E and G [Brucella melitensis biovar Abortus 2308] gi|189024097|ref|YP_001934865.1| Ribonuclease E and G [Brucella abortus S19] gi|237815344|ref|ZP_04594342.1| ribonuclease, Rne/Rng family [Brucella abortus str. 2308 A] gi|254689161|ref|ZP_05152415.1| Ribonuclease E and G [Brucella abortus bv. 6 str. 870] gi|254697296|ref|ZP_05159124.1| Ribonuclease E and G [Brucella abortus bv. 2 str. 86/8/59] gi|254730194|ref|ZP_05188772.1| Ribonuclease E and G [Brucella abortus bv. 4 str. 292] gi|256257411|ref|ZP_05462947.1| Ribonuclease E and G [Brucella abortus bv. 9 str. C68] gi|260545397|ref|ZP_05821138.1| ribonuclease E and G [Brucella abortus NCTC 8038] gi|260754660|ref|ZP_05867008.1| ribonuclease [Brucella abortus bv. 6 str. 870] gi|260757883|ref|ZP_05870231.1| ribonuclease [Brucella abortus bv. 4 str. 292] gi|260761706|ref|ZP_05874049.1| ribonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260883686|ref|ZP_05895300.1| ribonuclease [Brucella abortus bv. 9 str. C68] gi|297248260|ref|ZP_06931978.1| ribonuclease Rne/Rng domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62195987|gb|AAX74287.1| ribonuclease, Rne/Rng domain protein [Brucella abortus bv. 1 str. 9-941] gi|82615882|emb|CAJ10886.1| Ribonuclease E and G [Brucella melitensis biovar Abortus 2308] gi|189019669|gb|ACD72391.1| Ribonuclease E and G [Brucella abortus S19] gi|237790181|gb|EEP64391.1| ribonuclease, Rne/Rng family [Brucella abortus str. 2308 A] gi|260096804|gb|EEW80679.1| ribonuclease E and G [Brucella abortus NCTC 8038] gi|260668201|gb|EEX55141.1| ribonuclease [Brucella abortus bv. 4 str. 292] gi|260672138|gb|EEX58959.1| ribonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260674768|gb|EEX61589.1| ribonuclease [Brucella abortus bv. 6 str. 870] gi|260873214|gb|EEX80283.1| ribonuclease [Brucella abortus bv. 9 str. C68] gi|297175429|gb|EFH34776.1| ribonuclease Rne/Rng domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 922 Score = 474 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 374/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 52.7 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919 >gi|153009598|ref|YP_001370813.1| ribonuclease [Ochrobactrum anthropi ATCC 49188] gi|151561486|gb|ABS14984.1| ribonuclease, Rne/Rng family [Ochrobactrum anthropi ATCC 49188] Length = 926 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 369/678 (54%), Positives = 460/678 (67%), Gaps = 59/678 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + + + +D + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSERSERSDRND 120 Query: 121 EEVAPIANFSQETEEESIISANNDV----------------------------------- 145 ++ + + D Sbjct: 121 RSRRNRRRGRRDGQNGDAQANAADKGLPAAEPVGPAFENYVPGTPAMALSQKSDVISEAL 180 Query: 146 ---------------VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190 S + + +RQY IQEVIK RQILLVQ+VKEERG Sbjct: 181 DNGDEDDIEHEEDMVESVGSEDALEELPTPARTNRRQYNIQEVIKRRQILLVQVVKEERG 240 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250 NKGAA+TTYLSLAGRYSVLMPNT++G ISRKIT P DRK LKEI + LEVP GMGVILR Sbjct: 241 NKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPQDRKRLKEIVKELEVPQGMGVILR 300 Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310 TAGA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI Sbjct: 301 TAGANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPSLVYEEGSLIKRSIRDLYNKDITEI 360 Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 +VSGE GYREAKDFM++LMPS+A++V+ Y + PIF R+G+E QLD + +VTL S GY Sbjct: 361 LVSGENGYREAKDFMRMLMPSHAKVVQPYREQVPIFTRNGVEAQLDRMLLPQVTLKSGGY 420 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 +IINQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDM Sbjct: 421 LIINQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDM 480 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 EEK+NNR+VEKK+K+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G Sbjct: 481 EEKRNNRAVEKKMKDCLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCQHCGGT 540 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 G++RS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV+I Sbjct: 541 GHVRSDSSMALHIIRGIEDYLLRHSGFDINVRTPAASALYVLNHKRQLLADLEGRFGVAI 600 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++ + + F I+KG+P + +Q P ++ +P+ + E Sbjct: 601 SIDADESVGHQHFVIDKGAPSTRPI---------TQPPVQPMAYIEDDIEDPEIPVDEDE 651 Query: 611 SLEDIQDNIVSEESTGVI 628 + E+ ++ + E G Sbjct: 652 AEEEATADVQAREDRGDE 669 Score = 49.2 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 5/146 (3%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 +A + +K + + A E+ ED+ E+ RK R R++ Sbjct: 783 AAEVAVPAIEATAEEKPAKTARKPRARKSAKTEEAAEDVVVAEAEEKPAKPARKTRSRKK 842 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 A A + + + +P+ + S P Sbjct: 843 VAEEAPAEPVAVTEEPEAEAEKPKRRTRRAAAKPAVEVEETVAVEAEVATIAEPQKSAEP 902 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722 V T S+ S D K+ WW+++ Sbjct: 903 VVT-----SSESEDQKPKRAGWWQKK 923 >gi|254701676|ref|ZP_05163504.1| ribonuclease Rne/Rng domain-containing protein [Brucella suis bv. 5 str. 513] gi|261752228|ref|ZP_05995937.1| ribonuclease [Brucella suis bv. 5 str. 513] gi|261741981|gb|EEY29907.1| ribonuclease [Brucella suis bv. 5 str. 513] Length = 922 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTSAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 52.7 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919 >gi|254693644|ref|ZP_05155472.1| Ribonuclease E and G [Brucella abortus bv. 3 str. Tulya] gi|261213910|ref|ZP_05928191.1| ribonuclease [Brucella abortus bv. 3 str. Tulya] gi|260915517|gb|EEX82378.1| ribonuclease [Brucella abortus bv. 3 str. Tulya] Length = 922 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 373/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E + D Sbjct: 121 RNRRRGGRRDGQNGEAQANGTDKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRD+Y KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDIYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 52.7 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919 >gi|306843811|ref|ZP_07476409.1| ribonuclease, Rne/Rng family [Brucella sp. BO1] gi|306275889|gb|EFM57605.1| ribonuclease, Rne/Rng family [Brucella sp. BO1] Length = 922 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 375/666 (56%), Positives = 453/666 (68%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDVISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPPHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GMGVILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 56.5 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 1/152 (0%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 +A+ +A +K + + E+ E++ E+ RK Sbjct: 769 GEAVETVETVEAPVVEAAPEEKPEKPARKPRTRKTAKTEEAAEEVITAEAEEKPEKPARK 828 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R R++ A +A ++ + + +P Sbjct: 829 TRARKKAVEEAP-ADEAVAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEMKETVAAEAQV 887 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 888 ETIAEPKSTEPVVTSSESEDQKPKRSGWWQKK 919 >gi|23501798|ref|NP_697925.1| ribonuclease Rne/Rng domain-containing protein [Brucella suis 1330] gi|23347730|gb|AAN29840.1| ribonuclease, Rne/Rng domain protein [Brucella suis 1330] Length = 922 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 374/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GM VILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMSVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAATPAEEVVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919 >gi|83593484|ref|YP_427236.1| RNAse E [Rhodospirillum rubrum ATCC 11170] gi|83576398|gb|ABC22949.1| RNAse E [Rhodospirillum rubrum ATCC 11170] Length = 889 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 309/697 (44%), Positives = 426/697 (61%), Gaps = 39/697 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLIDA+H EETRVVVL R++E D E+ KKQ+KGNIYLAKV RVEPSLQAAFV+ Sbjct: 1 MTKRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ L+ E + + D + S Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSA 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + R Y IQEVIK RQI+ Sbjct: 121 PAP-----------------------------------RAKSRVSRSYKIQEVIKRRQIM 145 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY V MPNT++G +SRKIT+ DRK LK I L Sbjct: 146 LVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGGGVSRKITSATDRKRLKSIMGELI 205 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G VILRTAG+ R++ EI+RD +YL+R WD++R+ L S AP L++EEG+LIKRAIR Sbjct: 206 GPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQTTLASRAPCLIHEEGSLIKRAIR 265 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSGIEVQLDSLH 359 D+Y +DI EI+V G+ GYR AKDFMK+L PS+A+ V+ Y+D F R +E Q+D++H Sbjct: 266 DIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKKVQPYKDEIMPLFHRYQVESQMDAMH 325 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 L S GY++INQTEALV+IDVNSGRSTRE IE+TA +TNLEAA+EIARQLRLRDL Sbjct: 326 SPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNIEETAYKTNLEAADEIARQLRLRDL 385 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 +GLIV+DFIDM++ ++N +VE+++K++L+ DRAR+Q+G IS+FGLLEMSRQR+R S++E+ Sbjct: 386 SGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQLGRISHFGLLEMSRQRLRPSLMET 445 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + + C +C G+G +RS S A+ ILR +EE ++ + + V + + LY+LN KR + Sbjct: 446 SFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRRSSEVTVTVPTAIALYILNNKRTVL 505 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 EAR+ + ++ L + +++ + ++ AP V + Sbjct: 506 AAIEARYDFQVFLLGDDTLIVPDYRMDRVKAEREGLDALPAAAPPPTAPVAALPAPEVLE 565 Query: 600 DEALLPIPKSESL---EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 DE + E+ Q+ ++ R+RRRRRR+ + + + V + + Sbjct: 566 DEDEDEGTVEDEAFAEENGQNGADADGQGRKRRRRRRRRRKDQDGVEIEGSSVDDEEGAP 625 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + D + D + T + G + +S Sbjct: 626 EGTADSTEDEGADDEGETGDEAEDTGDELDPADGSLS 662 >gi|161618870|ref|YP_001592757.1| ribonuclease [Brucella canis ATCC 23365] gi|254704219|ref|ZP_05166047.1| ribonuclease [Brucella suis bv. 3 str. 686] gi|260566532|ref|ZP_05837002.1| ribonuclease E and G [Brucella suis bv. 4 str. 40] gi|261754887|ref|ZP_05998596.1| ribonuclease [Brucella suis bv. 3 str. 686] gi|161335681|gb|ABX61986.1| ribonuclease, Rne/Rng family [Brucella canis ATCC 23365] gi|260156050|gb|EEW91130.1| ribonuclease E and G [Brucella suis bv. 4 str. 40] gi|261744640|gb|EEY32566.1| ribonuclease [Brucella suis bv. 3 str. 686] Length = 922 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 374/666 (56%), Positives = 452/666 (67%), Gaps = 48/666 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LKEI + LEVP GM VILRTA Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPRDRKRLKEIVKELEVPQGMSVILRTA 300 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 GA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI+EI+V Sbjct: 301 GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV 360 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 SGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+I Sbjct: 361 SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI 420 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 INQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDMEE Sbjct: 421 INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE 480 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 K+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G+ Sbjct: 481 KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH 540 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I++ Sbjct: 541 IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI 600 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + ++ F I+KG+P V + D I + ++ Sbjct: 601 DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG 660 Query: 613 EDIQDN 618 E+ + Sbjct: 661 EERSEE 666 Score = 54.2 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 1/136 (0%) Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 A +K + + A E+ E + E+ RK R R++ A + Sbjct: 785 AAPEEKPEKPARKPRARKTAKTEEAAEAVITAEAEEKPEKPARKTRTRKKAVDEAP-ADE 843 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 A ++ + + +P + P ST + +S+ Sbjct: 844 AATPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSS 903 Query: 707 SSSDPIVKKTRWWKRR 722 S D K++ WW+++ Sbjct: 904 ESEDRKPKRSGWWQKK 919 >gi|15965081|ref|NP_385434.1| ribonuclease E protein [Sinorhizobium meliloti 1021] gi|307315051|ref|ZP_07594636.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti BL225C] gi|15074260|emb|CAC45907.1| Probable ribonuclease E [Sinorhizobium meliloti 1021] gi|306898890|gb|EFN29540.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti BL225C] Length = 924 Score = 469 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 394/695 (56%), Positives = 470/695 (67%), Gaps = 73/695 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVT------ 113 YGGNRHGFL F EIHPDYYQIP +DRQALLK A+ D + D V Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTV 120 Query: 114 ---------------------------------------IPNDHSLEEVAPIANFSQETE 134 + E P + + Sbjct: 121 AEVVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDGEGDKN 180 Query: 135 EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI------------------------ 170 E + + + + +++ + +D + I Sbjct: 181 EMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPRKQ 240 Query: 171 ---QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 QEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN Sbjct: 241 YRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQ 300 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 DRK LKEIARGL+VP GMGVILRTAGA+RTK+EIKRDFEYLMRLW+NVR L LNS AP L Sbjct: 301 DRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCL 360 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 VYEEG+LIKR+IRDLY KDISEI+VSGE+GY+EAK FMK+LMPS+A++V+ Y D HPIF Sbjct: 361 VYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFS 420 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGRSTREH IEDTALQTNLEAA Sbjct: 421 RSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAA 480 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 EE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG IS+FGLLEM Sbjct: 481 EEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEM 540 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 SRQRIR+SVLEST + C +C G G+IRSQSSVAL +LR +EE+LL+ T H+I V T D+ Sbjct: 541 SRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDI 600 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 LYLLNQKR++I +YE RFGVSI + + + F I++G PV+ V + + + Sbjct: 601 ALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQILQFEPEP 660 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 ++ + DE + +E + + + Sbjct: 661 EDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQ 695 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 37/152 (24%), Gaps = 1/152 (0%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 G A + + E E+ DI E + + Sbjct: 770 SRQDELAEAEGETGMAAEAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAAEEPKPA 829 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + RR R++ A V +V+ + LE Sbjct: 830 KPRRSRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDL 889 Query: 692 VSIPPVSTPEMESSNSSSDPI-VKKTRWWKRR 722 +I +P KK WW+RR Sbjct: 890 SAIATEPVVTSSKGEGEEEPTKPKKGGWWQRR 921 >gi|16126120|ref|NP_420684.1| ribonuclease, Rne/Rng family protein [Caulobacter crescentus CB15] gi|221234891|ref|YP_002517327.1| ribonuclease E [Caulobacter crescentus NA1000] gi|13423322|gb|AAK23852.1| ribonuclease, Rne/Rng family protein [Caulobacter crescentus CB15] gi|220964063|gb|ACL95419.1| ribonuclease E [Caulobacter crescentus NA1000] Length = 898 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 313/587 (53%), Positives = 410/587 (69%), Gaps = 24/587 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLIDA+H EETRVVV+ RVEE DFES+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL+++ + D Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDD-------------------- 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 PI+ + ++E ++ + V + +D ++ R+Y IQEVI+ RQI+ Sbjct: 101 ---TPISRRASGGDDEDDVNGGDRAVDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIM 157 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKIT DRK LK + + L+ Sbjct: 158 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLD 217 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+N+RE L+S+AP L+YEE +L+KRAIR Sbjct: 218 VPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIR 277 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y KD+ I V G+ GY+EA+DFM++LMPS A+ V Y DP P+F ++ IE L ++ Sbjct: 278 DMYDKDLDGIWVEGDAGYKEARDFMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYS 337 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSG++TRE IE TAL+TN EAAEE ARQLRLRDLA Sbjct: 338 PVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLA 397 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM+E KNNR+VEK LK++LK DRAR+Q+G IS FGL+E+SRQR R+ VLE T Sbjct: 398 GLIVIDFIDMDEAKNNRTVEKVLKDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGT 457 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T VC +C+G G +RS S AL+ LR+VE L+ + ++I+ V LY+LN+KR + Sbjct: 458 THVCEHCEGTGRVRSVESSALAALRAVEAEALKG-SGSVILKVSRSVGLYILNEKRDYLQ 516 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 G+ ++VV+ L IE+ + + + Sbjct: 517 RLLTTHGLFVSVVVDDSLHAGDQEIERTELGERIAVAPPPFVEEDDD 563 >gi|315499980|ref|YP_004088783.1| ribonuclease, rne/rng family [Asticcacaulis excentricus CB 48] gi|315417992|gb|ADU14632.1| ribonuclease, Rne/Rng family [Asticcacaulis excentricus CB 48] Length = 894 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 317/701 (45%), Positives = 427/701 (60%), Gaps = 36/701 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ MLIDA+H EETRVVVL ++VEE DFES +KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKTMLIDATHAEETRVVVLNGSKVEEFDFESHARKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ L+ E + + + + Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREKLMAELAAQAAANGHDDAEDEDHEDDGDDLPDE 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + ++Y IQEVIK RQIL Sbjct: 121 E------------------------------------RRLRAHLIKRYKIQEVIKRRQIL 144 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK LK +A+ L+ Sbjct: 145 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNGADRKRLKAVAQSLD 204 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RTK EIKRD++YL+R+W+N+RE L S AP L+YEE +L+KRAIR Sbjct: 205 VPQGMGLIVRTAGAKRTKTEIKRDYDYLLRVWENIRETTLRSNAPALIYEEEDLVKRAIR 264 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ KD + V G +GY+ AKDFM+++MPS A+ ++ Y P+F R GI+ L+ ++ Sbjct: 265 DLFDKDFDHVQVEGVEGYKSAKDFMRMIMPSQAKKIQLYNGGMPLFARHGIDDILNRIYS 324 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSG+ST+E IE TAL+TNLEAAEE ARQ+RLRDLA Sbjct: 325 PVVPLRSGGYLVINQTEALVAIDVNSGKSTKERNIEATALKTNLEAAEEAARQMRLRDLA 384 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GL+V+DFIDM+E KNNR+VEKKLK++L +DRAR+Q+G IS FGL+E+SRQR R+ LE T Sbjct: 385 GLVVIDFIDMDESKNNRAVEKKLKDALSEDRARIQMGKISGFGLMEISRQRRRTGFLEGT 444 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T +C +C+G G +RS S AL+ +R+++ + A I + V LY+LN+K+ + Sbjct: 445 TVICPHCEGMGRVRSTDSSALAAMRAIDLEAMTNGAGAITIKLPQAVALYILNEKQVHLA 504 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + +G+ +NV I +L F I + + T D + + + Sbjct: 505 KLRLEWGLKVNVEIDSDLNHAEFEIVRTVHADEVEFTPPPRPDPIIDLGPDPDYDEDEDE 564 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + + ++ ED D+ S+ + + RR RRRR D + + + Sbjct: 565 DVIAIDEEAIEREDTDDDEASDRAEAREDREDRRGRRRRRRRGRQDNEPRVEADTAEAEA 624 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 DS + + + N P + P Sbjct: 625 SDSEADSEDEDGDEDGDFRRNRRRRRGRRGGRRNGPDARPR 665 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 45/157 (28%), Gaps = 7/157 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E A +A + + A++ + + + + + Sbjct: 744 EDLRDQPAPKGKRPPRKRRGKAEAEASETVETIAEPAVMETAPEPVTDAVPEAVTETAAE 803 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF-DMYMEPSDITNHNLLENGAH 684 V + R+ R R++ + +++ ++ + ++ +EP + Sbjct: 804 EVAKPARKSRSRKKKTDEPVAEVAAEPTLTVEPAVEPAPVEVMVEPVAEPAPEPVLESEP 863 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + P ++ P K WW++ Sbjct: 864 LGGSFAPTAPEPDPAEI------NTPPAKPKRGWWRK 894 >gi|294084603|ref|YP_003551361.1| Rne/Rng family ribonuclease [Candidatus Puniceispirillum marinum IMCC1322] gi|292664176|gb|ADE39277.1| ribonuclease, Rne/Rng family [Candidatus Puniceispirillum marinum IMCC1322] Length = 846 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 304/711 (42%), Positives = 432/711 (60%), Gaps = 43/711 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LIDA EETRVV+L R+E+ D+E+E++KQ+KGN+YLA+VTRVEPSLQAAFV+ Sbjct: 1 MTKRLLIDARQSEETRVVLLSGTRIEDFDYETENRKQLKGNVYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNR GFL F EIHPDYY+IP DR+ALL D + D Sbjct: 61 YGGNRQGFLAFSEIHPDYYRIPIEDREALLAADKAEAQDEDNEKDAE------------- 107 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 D + V G + P + R+Y IQEVI +QI+ Sbjct: 108 -----------------------DGLETVGGGDGDEDDIRPARKVRKYKIQEVISRKQIM 144 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN S+G +SRKITN DRK LK + GL+ Sbjct: 145 LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNNSRGGGVSRKITNVADRKRLKTVVGGLD 204 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P GM VI+RTAG+ RTK EI RD+ YL +LW+++RE L S AP +++EEGNLIKR+IR Sbjct: 205 IPDGMAVIVRTAGSKRTKTEIARDYAYLSKLWNDIRERTLESQAPCIIHEEGNLIKRSIR 264 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y ++ EI+V GE+ Y+ A++ +K+L+PS+ + V+++ED P+F +E Q+D++H Sbjct: 265 DIYTSEVEEILVEGEEAYKAARNHIKMLIPSHVKKVKKHEDAIPLFQHYRVESQMDTIHS 324 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +VTL S GY++INQTEALV++DVNSGRSTRE IE+TAL+TNLEAA+E+ARQLRLRDL+ Sbjct: 325 PQVTLKSGGYLVINQTEALVAVDVNSGRSTRERNIEETALKTNLEAADELARQLRLRDLS 384 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIVVDFIDMEE +N +VE+++K++++ DRAR+Q+G+IS+FGLLEMSRQR+R S+ EST Sbjct: 385 GLIVVDFIDMEENRNQNAVERRMKDAMRNDRARIQIGSISHFGLLEMSRQRLRLSINEST 444 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + +C +C+G G +RS + AL LRS+E+ + + + H D+ L++LN KR + Sbjct: 445 SDLCPHCEGTGRVRSVDTAALQTLRSIEDEAQKGKMDEMHITVHRDIALFILNHKRDALA 504 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGSDSQAPSYDKN 593 E E+R+G++I ++ L + IE+ +++ + S + Sbjct: 505 ELESRYGITIMLLSDDTLISPEYRIERVGWQGKAPQQQNRRSPKPANNNNNNNSNSNRAD 564 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + D A S+S +D Q + ++ + + +RRRR + Sbjct: 565 NKDAKNDNASDTADASDSDDDAQTASEAGDNDATSDEDQPKRRRRGRRGGRRRRRRNGNE 624 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 + + SD A + + S Sbjct: 625 NGTNAENEGQTATSDAGSDNVASAEAATDAVSTADEAPAKKSRGRGRKATS 675 >gi|307294097|ref|ZP_07573941.1| ribonuclease, Rne/Rng family [Sphingobium chlorophenolicum L-1] gi|306880248|gb|EFN11465.1| ribonuclease, Rne/Rng family [Sphingobium chlorophenolicum L-1] Length = 894 Score = 465 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 321/594 (54%), Positives = 393/594 (66%), Gaps = 7/594 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLIDA H EETRV V++ NR+EE DFES KQ+KGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP DR+ALL+E + A+ D D D L Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPREDREALLREEREHAEEEAALRADYDDDDHADAGDGGL 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG-------GSPEDVPKKFKRQYCIQEV 173 E V + E E N + + +R+Y IQ+V Sbjct: 121 EVVEATHHHDDEEHGEEAAENGNGGDNGRGRGRRGKGDEAADELRRKRMALRRRYKIQDV 180 Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 IK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK Sbjct: 181 IKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLK 240 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + +P+ MG I+RTAG RTK EIKRDF+YL RLWD +RE L S AP L++ + + Sbjct: 241 SIIAEMALPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSD 300 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 LIKRAIRD+Y KDI E+IV GE GY+ AKDFMKLLMPS+AR V+QY D +F R+ +E Sbjct: 301 LIKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVED 360 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 QL +++ V L S GY++IN TEALVSID+NSGRSTREH IE TA+ TNLEAA EIARQ Sbjct: 361 QLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQ 420 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLRD+AGLIV+DFIDME N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R Sbjct: 421 LRLRDMAGLIVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLR 480 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 + VLE++T+ C +C+G G +R+ SS L LR +EE + I + + Y+LN Sbjct: 481 TGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSLITLRASQEAAFYVLN 540 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 KR + E E R+GV I ++ E+ +E P V + + Sbjct: 541 NKRHELDEIEQRYGVRIAILPDGEIEGARMSVEASGPRPERVVDYTPMVEEEDD 594 >gi|114569846|ref|YP_756526.1| ribonuclease E [Maricaulis maris MCS10] gi|114340308|gb|ABI65588.1| RNAse E [Maricaulis maris MCS10] Length = 890 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 336/727 (46%), Positives = 434/727 (59%), Gaps = 31/727 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLIDA H EETRVVVL ++VE+ DFE+ ++ I+GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKKMLIDAGHPEETRVVVLDGSKVEDFDFEAAARRPIRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIPF DRQAL +E A D + ++ V Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPFEDRQALAEEEASAADDEDDEVEETKSESVR------- 113 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A A+ + E E+ S +D+ ++ R+Y IQEVIK RQIL Sbjct: 114 --SADNASEDADGEGEAEAPETIGDDSEDDDISDQQAARRRRQMFRKYKIQEVIKRRQIL 171 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KEERGNKGAA+TTYLSLAGRY VLMPNT +G ISRKI+N DRK LK + LE Sbjct: 172 LVQVAKEERGNKGAALTTYLSLAGRYCVLMPNTPRGGGISRKISNASDRKRLKSVVSELE 231 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P G+G+I+RTAGASRTK EIKRD +YL+RLW N+REL L+SVAP L+YEEGNL+KR IR Sbjct: 232 LPKGVGLIIRTAGASRTKTEIKRDADYLLRLWTNIRELTLSSVAPSLIYEEGNLVKRVIR 291 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLY K+I ++V GE+ Y+EAK FMK+LMPS+A+ V+ Y++ P++ R E QL++++ Sbjct: 292 DLYDKEIDSVLVEGEEAYKEAKAFMKMLMPSHAKKVQHYKEAVPLYLRHQCEAQLEAIYS 351 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY++IN TEALVSIDVNSG+STRE IE TAL+TNLEAA E ARQ+RLRDLA Sbjct: 352 DVAPLKSGGYLVINPTEALVSIDVNSGKSTRERNIEATALKTNLEAAAEAARQMRLRDLA 411 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM+E KNNR+VEKK+K+ LK+DRAR+QVG IS FGL+E+SRQR RSS+LE + Sbjct: 412 GLIVIDFIDMDENKNNRAVEKKMKDMLKRDRARLQVGRISQFGLMEISRQRRRSSLLEGS 471 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T C CKG+G++RS S AL LR +E+ + A I + + V +YLLN KR ++ Sbjct: 472 TTTCPTCKGSGHLRSTESSALVALRGLEKEGTRGRAKRIRISVPTAVAIYLLNDKRDHLL 531 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG---SPVQALVNTGHKVGSDSQAPSYDKNIECV 597 E RF +SI V + F IE P + LV V S + D E Sbjct: 532 MIEQRFSMSIAVTADDTILAPEFSIEALENREPGEELVMAPLSVESIEEIEIPDVPEEDD 591 Query: 598 WQDEALLPIPKSE-------------------SLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + ++ + ++ + + G + RR Sbjct: 592 SDTDDEQEGREASGGRRRRRRRRRKPSSDDTTAAMEVVNVEAEDSDEGDNADKAESRRDG 651 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 D + + + D + P S Sbjct: 652 SGEDDDDQPRRRRRRGRRGGRGRRRTEGETNGEEAVAGEASADAPASDAPASDTANPDSS 711 Query: 699 TPEMESS 705 E + Sbjct: 712 ATEASAE 718 >gi|294010752|ref|YP_003544212.1| putative ribonuclease [Sphingobium japonicum UT26S] gi|292674082|dbj|BAI95600.1| putative ribonuclease [Sphingobium japonicum UT26S] Length = 892 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 322/581 (55%), Positives = 393/581 (67%), Gaps = 6/581 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLIDA H EETRV V++ NR+EE DFES KQ+KGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP DR+ALL+E + A+ D D D L Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRADYDDDDHADAGDGGL 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG------GSPEDVPKKFKRQYCIQEVI 174 E V + E E N +G +R+Y IQ+VI Sbjct: 121 EVVEATHHHDDEDHGEEAAENGNGDNGRGRGRRGKGDDAADELRRKRMALRRRYKIQDVI 180 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK Sbjct: 181 KRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKS 240 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 I + +P+ MG I+RTAG RTK EIKRDF+YL RLWD +RE L S AP L++ + +L Sbjct: 241 IIAEMALPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSDL 300 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 IKRAIRD+Y KDI E+IV GE GY+ AKDFMKLLMPS+AR V+QY D +F R+ +E Q Sbjct: 301 IKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQ 360 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L +++ V L S GY++IN TEALVSID+NSGRSTREH IE TA+ TNLEAA EIARQL Sbjct: 361 LAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQL 420 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRD+AGL+V+DFIDME N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R+ Sbjct: 421 RLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRT 480 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 VLE++T+ C +C+G G +R+ SS LS LR +EE + + I + + Y+LN Sbjct: 481 GVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGNLITLRASQEAAFYVLNN 540 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 KR + E E R+GV I ++ E+ +E P V Sbjct: 541 KRRELDEIEQRYGVRIAILPDGEVEGARMSVEASGPRPERV 581 >gi|103488647|ref|YP_618208.1| ribonuclease [Sphingopyxis alaskensis RB2256] gi|98978724|gb|ABF54875.1| RNAse E [Sphingopyxis alaskensis RB2256] Length = 881 Score = 464 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 327/737 (44%), Positives = 413/737 (56%), Gaps = 36/737 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLIDA H EETRV V + NR+EE DFES KQ+KGNIYLAKVTRVEPSLQAAFV+ Sbjct: 12 MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE 71 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP DR+ALL+E + A+D D Sbjct: 72 YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAAAAQRAEDDLDELEGDVADVEE 131 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVK--------------------------- 153 + + ET E + + Sbjct: 132 HDDENGDAPAPETIGEGEGEDDGENGDADNGDADGEEGAEEGRENRGDRKRRGRDGRKGG 191 Query: 154 -------GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 + +R+Y IQ+VI+ RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY Sbjct: 192 RGRGRRSDEEDGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRY 251 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 VLMPNT G ISRKI+N DR+ LK + + +P MG I+RTAG SRTK EIKRDF+ Sbjct: 252 CVLMPNTMHGGGISRKISNGADRRKLKAMIDEMNLPPTMGCIVRTAGMSRTKTEIKRDFD 311 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YL RLWD +RE L S AP L++ + +LIKRAIRD+Y KDI E++V G++GY+ AK FMK Sbjct: 312 YLARLWDEIREKTLASSAPALIHSDSDLIKRAIRDIYHKDIEEVLVEGDEGYKAAKQFMK 371 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 LLMPS+AR V+QY DP ++ R G+E QL + V L S GY++IN TEALVSID+NS Sbjct: 372 LLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDINS 431 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 GRSTREH IE TAL TNLEAA EIARQLRLRD+AGLIV+DFIDM+ N R VE+ +KE+ Sbjct: 432 GRSTREHNIEQTALSTNLEAAAEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMKEA 491 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 LK DRAR+QVG IS FGL+EMSRQR+R+ VLE++T+ C +C+G G +R+ SS LS LR Sbjct: 492 LKNDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSALRL 551 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 +EE + I + + YLLN+KR + E E +GVS+ ++ E IE Sbjct: 552 IEEEAARGKGSKITLRASQEATFYLLNEKRRELHEIEELYGVSVEILPDGETEGARMAIE 611 Query: 567 -KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 G P + + + + DE D D Sbjct: 612 VGGPPPTQRRSFAPIEPIEDDEDDIPEEEDEEESDEDASDSRAPARARDESDTDGEGRKR 671 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+R RR RR T+ + + V +Q D+ E A Sbjct: 672 RRRRRRSRRGRRDEEGTEGAEDAPSA-VDDVQETAGDAEAASTTDEAPGTDAEAEPAAKK 730 Query: 686 FTENYDVSIPPVSTPEM 702 Sbjct: 731 PRRRGGRGRKKGDEANS 747 >gi|254294255|ref|YP_003060278.1| ribonuclease, Rne/Rng family [Hirschia baltica ATCC 49814] gi|254042786|gb|ACT59581.1| ribonuclease, Rne/Rng family [Hirschia baltica ATCC 49814] Length = 904 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 311/703 (44%), Positives = 420/703 (59%), Gaps = 15/703 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ MLIDA+H EETRV V+ D ++E+ DFE+ K+Q++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKLMLIDAAHPEETRVTVVADGQIEDFDFEARDKRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP DR+ALL E+ + + D + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPKEDREALLAETMASSRHDDDDDVDEEDTVEHNHDSEDS 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E ++++I + D S+ ++ K +P+ +K R+Y IQEVIK RQ+L Sbjct: 121 SEENSETENLSSEGDDTLIDEDTDSSSDDDNAKQRAPKPRHQKPSRRYKIQEVIKRRQVL 180 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L+Q+VKEERGNKGAAVTTYLSLAGRY VLMPNT++G ISRKI N DRK LK+I Sbjct: 181 LIQVVKEERGNKGAAVTTYLSLAGRYGVLMPNTARGGGISRKIANAADRKRLKKIMGEFS 240 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RTK EI RD++YL+RLW +R+ L+S+AP L++EEG+L+ RAIR Sbjct: 241 VPEGMGLIIRTAGAKRTKSEISRDYDYLIRLWSTIRDQTLDSMAPCLIHEEGDLVLRAIR 300 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLY +DI IIV G++ Y +AK+ + +LMP +A V ++ P+F +E QLD++ Sbjct: 301 DLYDRDIDNIIVEGKEAYVQAKNVISMLMPDHAEKVIEHNHKAPLFISQAVEAQLDNIFS 360 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY++INQTEALV++DVNSG++TRE IE TA++TNLEAA E+ RQ+RLRDLA Sbjct: 361 PVVQLPSGGYLVINQTEALVAVDVNSGKATRERNIEATAVKTNLEAAAEVCRQMRLRDLA 420 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GL+V+DFIDMEE KNNR+VEKK+K+ L DRARVQ G IS FGL E+SRQR R+ VLE + Sbjct: 421 GLVVIDFIDMEESKNNRAVEKKMKDCLSIDRARVQTGRISQFGLFEISRQRRRAGVLELS 480 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C C+G G RS S AL +LR++EE ++ S+V LY+LN KR +I Sbjct: 481 SEPCKACQGTGRNRSIESAALQLLRAIEERGADGRVDSVAAKAPSEVALYILNHKRDSIT 540 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 EA G I + E+ F IE + + + E + Sbjct: 541 SMEASTGADILISADDEMMPGDFAIEATGDGNIIAYKPIVPIDATPKKRRRRRPEEDEE- 599 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 DN +++ RR + V Sbjct: 600 --------------AVDNSEQNDTSDEEDDDELDENSRRRRRGRRGGRRRRGNETGSEVS 645 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 D ++ S+ + + + + P TP++ Sbjct: 646 ADGMEVIDGDSEEESEDTNNSSNASKSRRPRRRRPRRRTPDVA 688 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 9/148 (6%) Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR-PAT 642 +S + I E + E + + + + + P T Sbjct: 757 ESNTSEESQAIASDVSKEETVEASTKEEAKPAETEVPAPTMSEPTTDVSHEANDASTPLT 816 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP-- 700 A SD + ++ S +E + + ++ A E + P Sbjct: 817 KEEPAKSESDSETSKSDESSSEPKNLEEAPVEPVAEVKIDAPAKAETAETEPAPAEETAS 876 Query: 701 ------EMESSNSSSDPIVKKTRWWKRR 722 + P +K WW R+ Sbjct: 877 LHSLHANTSTIAEEKAPKKRKIGWWNRK 904 >gi|329890091|ref|ZP_08268434.1| ribonuclease, Rne/Rng family domain protein [Brevundimonas diminuta ATCC 11568] gi|328845392|gb|EGF94956.1| ribonuclease, Rne/Rng family domain protein [Brevundimonas diminuta ATCC 11568] Length = 895 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 297/595 (49%), Positives = 393/595 (66%), Gaps = 39/595 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ MLIDA+H EETRV ++ +VEE DFES ++Q++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKTMLIDAAHAEETRVAIVDGRQVEEFDFESRARRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+A++ E++ + + + D Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREAIMAEAHDDADEDDLGRESDDADSDGKLADE-- 118 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + ++ R+Y IQ+VIK RQIL Sbjct: 119 -------------------------------------ERLKRRLMRRYKIQDVIKRRQIL 141 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VK+ERG KGAA+TT+LSLAGRY VLMPNT KG ISRKITN DR+ LK A L+ Sbjct: 142 LVQVVKDERGAKGAALTTWLSLAGRYCVLMPNTGKGGGISRKITNTSDRRRLKSAAAALK 201 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RT+ EIKRD+EYL+RLW+ +REL L S AP +++EE NL++RA+R Sbjct: 202 VPQGMGLIIRTAGAKRTRAEIKRDYEYLLRLWETIRELTLRSNAPAMIHEEENLVRRAVR 261 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y KD I V G +G+++A+DFM++LMPS A+ + Y+ P+F +GIE L +HQ Sbjct: 262 DMYDKDFDGIQVEGVEGFKQARDFMRVLMPSQAKKIHLYQGSRPLFAANGIEEVLTQIHQ 321 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSGR+T+E +E TA +TNLEAA E ARQLRLRDLA Sbjct: 322 PVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEATATKTNLEAAVEAARQLRLRDLA 381 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM+E KNNR+VEK LK++L KDRAR+Q+G IS FGL+E+SRQR R V+E Sbjct: 382 GLIVIDFIDMDEGKNNRAVEKALKDALAKDRARIQMGRISGFGLMEISRQRRRLGVIEGA 441 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T+VC C+GAG +RS S AL+ LR+V+ + A ++ + + V LY+LN KRA + Sbjct: 442 TEVCECCQGAGRVRSAESAALTTLRAVDIEAGKNGAGSVNLRVSTAVALYILNHKRAYLQ 501 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 G+++ + I LA IE+ + V + +D + Sbjct: 502 FLLEERGLNVIIQIDDSLAQGEHSIERTETNEDFVAPESHIDLADLDDGFDDSAY 556 >gi|298291322|ref|YP_003693261.1| ribonuclease, Rne/Rng family [Starkeya novella DSM 506] gi|296927833|gb|ADH88642.1| ribonuclease, Rne/Rng family [Starkeya novella DSM 506] Length = 915 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 374/738 (50%), Positives = 477/738 (64%), Gaps = 40/738 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE DFE+ ++K ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDFEAANRKPLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL E Q ++ + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALLAEEERQQRREAEAENEDKPKSRSRRGRGAA 120 Query: 121 EEVA--------------------------------------PIANFSQETEEESIISAN 142 + N E EE + Sbjct: 121 KSANADETVSEEAAGEDAPAAEEAEAAPARRSRRRPPSSSSSDDENGGGEVEEIAGEEEV 180 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 D V + + ++ P+ RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSL Sbjct: 181 VDEVGSDDALEEVPERGAPRVRARQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSL 240 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRYSVLMPNT++G ISRKIT+ DRK LKE+A L+VP GMGVILRTAGA+RTK EIK Sbjct: 241 AGRYSVLMPNTARGGGISRKITSAEDRKRLKEVASDLDVPEGMGVILRTAGANRTKPEIK 300 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 RDFEYL+RLW+NVREL L S AP LVYEEG+LIKR+IRDLY KDI E++V+G++GYREAK Sbjct: 301 RDFEYLLRLWENVRELTLGSTAPSLVYEEGSLIKRSIRDLYNKDIDEVLVAGDEGYREAK 360 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 DFM++LMPS+A+ V+ Y+D PIF R G+E QLD++ +V L S GY++IN TEALVSI Sbjct: 361 DFMRMLMPSHAKNVKVYKDLQPIFTRFGVESQLDAMFLPQVQLRSGGYLVINPTEALVSI 420 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSGRSTREH IEDTAL+TNLEAAEE+ARQLRLRDLAGL+V+DFIDM+EK+NNRSVE+K Sbjct: 421 DVNSGRSTREHNIEDTALKTNLEAAEEVARQLRLRDLAGLVVIDFIDMDEKRNNRSVERK 480 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 LK+ LK DRAR+Q+G IS+FGL+EMSRQRIR+ VLES+T+VC +C G G++RS SVAL Sbjct: 481 LKDCLKNDRARIQLGRISHFGLMEMSRQRIRTGVLESSTEVCPHCGGTGHVRSSPSVALQ 540 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADK 561 +LR+ E+ L + HN+IV T ++ LY+LN KRA + E E RFGV I + L Sbjct: 541 LLRAAEDLLQRSNTHNLIVRTRTENALYVLNHKRAHLHELEERFGVVITISADPTLTGLT 600 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F I+KG V + + E V ++EA + ++ S + Sbjct: 601 PFAIDKGEAVANPIPLPRAPEVVIEPEEEFPVAEEVEEEEAEVAETRAPSAPSDGEQPQG 660 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + S R+RRRRR + + H G + +D + ++ +++ Sbjct: 661 DRSGRRRRRRRRRRGGGQNGENGHRPGENEAADAAGIEFEDDGEDEGGEAESGATDVI-P 719 Query: 682 GAHGFTENYDVSIPPVST 699 E+ + PP Sbjct: 720 AVPLSDEDASLVAPPAED 737 >gi|114800079|ref|YP_759402.1| ribonuclease [Hyphomonas neptunium ATCC 15444] gi|114740253|gb|ABI78378.1| ribonuclease, Rne/Rng family [Hyphomonas neptunium ATCC 15444] Length = 909 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 305/706 (43%), Positives = 424/706 (60%), Gaps = 13/706 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ MLIDA+H EETRV ++ + +V++ DFE+ +Q++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSRLMLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAV-----------ADDVTH 109 YGGNRHGFL F EIHPDYYQ+P +DR+ LLKE+ + + ++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQLPAADRELLLKEAAEEAAAAIEDDDDGPYVPHGMSSEMGN 120 Query: 110 GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC 169 G ++ + + ++ + + + + ++Y Sbjct: 121 GASDEGDEDDDHGDDGDEDTASADDDGEDEGDDAAPRAAKPARRNAKKQTQRTPISKRYK 180 Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 IQEVI+ RQ++LVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT +G ISRKI N DR Sbjct: 181 IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGISRKIVNSADR 240 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 K LK I L+VP G G+I+RTAGA RTKIEIKRD++YL +LW+ + E L+S AP L+ Sbjct: 241 KRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKTLSSEAPALIN 300 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 EG L+ RA+RD++ K+I E+ V G++ YREAKD K++MPS A+ V+Q+ + P++ Sbjct: 301 AEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKDLAKIIMPSQAKKVQQWREEDPLYVAE 360 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E QLDS++ V L S GY++INQTEALV+IDVNSG+STRE IE TA++TNLEAAEE Sbjct: 361 AVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTAVRTNLEAAEE 420 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 RQ+RLRDLAGLIV+DFIDMEE KNNR+VEK+LKE LK DRARVQ G IS FGL+E+SR Sbjct: 421 ACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRISQFGLMEISR 480 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR R VL++T+ C+ C G G RS S AL ++R++E I V +DV L Sbjct: 481 QRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAIEARAATGGLKGIGVKAPTDVAL 540 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 Y+LN KR ++E E G +I++ ++ F I+ P+ Sbjct: 541 YILNNKREALIEIERLAGFAISIHSSEDMLPGDFQIDADR-DPNAKPKKRSTPRSLMKPT 599 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + ++ + + E+ ED D + ++ RRRRRR + +A Sbjct: 600 PPSARDDDDEEIDDEDVIEDEAGED-DDGETPAAAANKDKQGGGRRRRRRGGRNRGEARE 658 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 D+ + + + A +++ D + Sbjct: 659 TGLEVVDAEPAADADASEDDDDEDDGEDTSNGSAEAGSDDSDAARK 704 >gi|94495886|ref|ZP_01302465.1| ribonuclease, Rne/Rng family protein [Sphingomonas sp. SKA58] gi|94424578|gb|EAT09600.1| ribonuclease, Rne/Rng family protein [Sphingomonas sp. SKA58] Length = 911 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 328/671 (48%), Positives = 415/671 (61%), Gaps = 6/671 (0%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA H EETRV V++ NR+EE DFES KQ+KGNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP DR+ALL+E + A+ ++ + + L E Sbjct: 61 RHGFLAFSEIHPDYYQIPREDREALLQEERAHAEEEAALRAEIEDDEDAGEDGVELVEAT 120 Query: 125 PIANFSQETEE------ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 E D +R+Y IQ+VIK RQ Sbjct: 121 HHHEDEDAAEADAESPAPEAAKGGRRKRGKNGDDAADELRRKRMALRRRYKIQDVIKRRQ 180 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 +LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK I Sbjct: 181 VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIIAE 240 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 + +P+ MG I+RTAG RTK EIKRDF+YL RLWD +RE L + AP L++ + +LIKRA Sbjct: 241 MNLPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLQASAPELIHNDSDLIKRA 300 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 IRD+Y KDI E+IV GE GY+ AKDFMKLLMPS+AR V+QY D +F R+ +E QL ++ Sbjct: 301 IRDIYNKDIEEVIVEGEDGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQLAAM 360 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 + V L S GY++IN TEALVSID+NSGRSTREH IE TA+ TNLEAA EIARQLRLRD Sbjct: 361 YNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLRD 420 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 +AGL+V+DFIDME N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R+ VLE Sbjct: 421 MAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVLE 480 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 ++T+ C +C+G G +R+ SS LS LR +EE + + I + + Y+LN KR Sbjct: 481 ASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGNLITLRASQEAAFYVLNNKRRE 540 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 + E E R+GV I ++ E+ +E P V T + D ++ + + Sbjct: 541 LDEIELRYGVRIEILPDGEIEGARMSVEASGPRPERVVTYAPLVEDDDDIDLPEDEDDIE 600 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + E + E D D R+RRR +R +A + S + Sbjct: 601 EVEDAEDSAEREERGDRGDEDREGGRRRRRRRRRRGGQREDQRDAGSEAETDDNESGDET 660 Query: 659 VIDDSFDMYME 669 +D + Sbjct: 661 DAEDGDEAEDR 671 >gi|83858494|ref|ZP_00952016.1| ribonuclease, Rne/Rng family protein [Oceanicaulis alexandrii HTCC2633] gi|83853317|gb|EAP91169.1| ribonuclease, Rne/Rng family protein [Oceanicaulis alexandrii HTCC2633] Length = 908 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 321/697 (46%), Positives = 421/697 (60%), Gaps = 48/697 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLIDA+H EETRVV++ +NRVEE DFES KK I+GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSRKMLIDAAHPEETRVVIVDNNRVEEFDFESASKKPIRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGN+HGFL F EIHPDYYQIP DR AL + D G+ ++ + Sbjct: 61 YGGNKHGFLAFNEIHPDYYQIPHEDRAALREAEAEVAADL---------GEDAGSDEENE 111 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + AP + + + F R+Y IQEVIK RQ+L Sbjct: 112 DAPAPDEDDLIDE-----------------------AARRRRSFLRKYKIQEVIKRRQVL 148 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK LK L Sbjct: 149 LVQVAKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNASDRKRLKSAVSELS 208 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA+RTK+EIKRD++YL+RLW+ +R L S AP L+YEEGNL+KR IR Sbjct: 209 VPQGMGLIIRTAGAARTKVEIKRDYDYLIRLWETIRTTTLESSAPKLIYEEGNLVKRVIR 268 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLY K+I E++V GE+ Y+EAK FM++LMPS+A+ V+ Y D P+F R +E QL+++H Sbjct: 269 DLYDKEIDEVLVDGEEAYKEAKAFMRMLMPSHAKKVQNYRDATPLFLRHQVESQLEAIHS 328 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY++IN TEALVSIDVNSG++T+E IE TAL+TN+EAAEE ARQ+RLRDLA Sbjct: 329 PVAQLKSGGYIVINPTEALVSIDVNSGKATKERNIEQTALKTNMEAAEEAARQMRLRDLA 388 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GL+V+DFIDM+E KN R+VEKK+K+SLK+DRAR+QVG IS FGL+EMSRQR R+S++E + Sbjct: 389 GLLVIDFIDMDENKNVRAVEKKMKDSLKRDRARLQVGRISQFGLMEMSRQRRRTSLVEGS 448 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T VC +C+G+G+IRS S AL LR++EE ++ + +V LY+LN+KR + Sbjct: 449 TDVCPHCQGSGHIRSIESSALVALRTLEEEGVRGRTAKARLRCSPEVALYILNEKRDHLT 508 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 EAR+ +S+ V L +E+ + + + +E Sbjct: 509 AIEARYDMSVTVSADDSLIRPDCQLERLESRREAARAVAEAARADTPLTSADAVEP---- 564 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + D S+E+ + R R T+ + Sbjct: 565 ------------DLDIDEDESDEAEDSAERDTRPARSASDETNEDGSKKRRRRGRRGGRN 612 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 + D L E D + Sbjct: 613 RRKRNDEAGGQDDAQAALDNADDENRAETTDTASDDE 649 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 5/149 (3%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ +AP+ K + E + D + + ++R Sbjct: 757 KPTADAQSGDAEDEAPAKPKRRTRRKKAEPAADAASETNAADDETASADAGDSAKPKRRT 816 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 RR++ TD + S+ + + ++ S+ E A + D Sbjct: 817 RRKKAEPENTDKAAREAMEQASAPAELSVEEAKAEIQASETN----AEPAAEAKSAESDK 872 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 S E+ +S K+ WW++ Sbjct: 873 PEDAASETRQETGDSEEARPAKR-GWWQK 900 >gi|167646534|ref|YP_001684197.1| ribonuclease [Caulobacter sp. K31] gi|167348964|gb|ABZ71699.1| ribonuclease, Rne/Rng family [Caulobacter sp. K31] Length = 905 Score = 457 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 324/685 (47%), Positives = 422/685 (61%), Gaps = 48/685 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLIDA+H EETRVVV+ +RVEE DFES+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL+++ + D Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHG---------------- 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + D V + ED ++ R+Y IQEVI+ RQI+ Sbjct: 105 -----------------RDGDDGDAVDDEEDAVEEELARRKRRLMRKYKIQEVIRRRQIM 147 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKIT DRK LK + +GL+ Sbjct: 148 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTITDRKRLKSVVQGLD 207 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+N+R+ L+S+AP L+YEE +L+KRAIR Sbjct: 208 VPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRDNTLHSIAPALIYEEEDLVKRAIR 267 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y KD+ I V GE GY+EA+DFM++LMPS A+ V Y + P+F + IE L ++ Sbjct: 268 DMYDKDLEGIWVEGEAGYKEARDFMRMLMPSQAKKVFPYREAAPLFVKHKIEDHLAQIYS 327 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSG++TRE IE TAL+TN+EAAEE ARQLRLRDLA Sbjct: 328 PVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNMEAAEEAARQLRLRDLA 387 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM+E KNNR+VEK LK+SLK DRAR+Q+G IS FGL+E+SRQR R+ VLE T Sbjct: 388 GLIVIDFIDMDEGKNNRAVEKILKDSLKDDRARIQMGKISGFGLMEISRQRRRTGVLEGT 447 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T VC +C G G +RS S AL+ LR+VE L+ + + V +Y+LN+KRA ++ Sbjct: 448 THVCEHCDGTGRVRSVESSALAALRAVEVEALKG-GGAVTLKVSRPVGIYILNEKRAYLL 506 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + + V++ L I++ + P YD + Sbjct: 507 RLQQTHALFVTVLVDDSLHQAEHDIDRTELGER--PAPQIFAPIEPDPVYDDEAFEDEDE 564 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 E I S ED R R R PA D + Sbjct: 565 EDEEEIEVGASEED------------DEAPRVARPARAEPAEDDANGRRGRKRRRRGGRR 612 Query: 661 DDSFDMYMEPSDITNHNLLENGAHG 685 D+ + +E + + + Sbjct: 613 DERDEAPVEAAGDEDEEDADGVERA 637 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 11/156 (7%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 ++ + + L P D+ + ++ K+ R Sbjct: 752 DRTETSADAPRAERTPAPRVDVADLEPAPLAPAVIEGPPADVWVELPPQDEA---PKKAR 808 Query: 634 RRRRR-RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF----TE 688 R R R R ATD + S S+ ++ + E + +E E Sbjct: 809 RPRSRGRKATDAETSVEASVEESVAETVEATPAPVDETPLVAADVEVEASVAVQPAPAPE 868 Query: 689 NYDVSIPPVSTPEMESSNSSS---DPIVKKTRWWKR 721 V+ PV P + + P K WW+R Sbjct: 869 PVMVAPEPVPAPVAAEPDPAEILTPPEKPKRGWWRR 904 >gi|163843182|ref|YP_001627586.1| ribonuclease [Brucella suis ATCC 23445] gi|163673905|gb|ABY38016.1| ribonuclease, Rne/Rng family [Brucella suis ATCC 23445] Length = 922 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 367/667 (55%), Positives = 446/667 (66%), Gaps = 50/667 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+NKMLIDASH EETRV+V R N++EE DFESEHKKQ+KGNIYLA+VTRVE SLQAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEQSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+ A + + D + ND + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR 120 Query: 121 EEVAPIANFSQETEEESIISANND------------------------------------ 144 + E A+ D Sbjct: 121 RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDIISEALDN 180 Query: 145 ------------VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 V S + + +RQY IQEVIK RQILLVQ+VKEERGNK Sbjct: 181 GDDDDVENEEDMVESVGSEDALEELPTHTRTHRRQYNIQEVIKRRQILLVQVVKEERGNK 240 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA-RGLEVPAGMGVILRT 251 GAA+TTYLSLAGRYSVLMPNT++G ISRKITNP D + + + LEVP GM VILRT Sbjct: 241 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQD-RKRLKEIVKELEVPQGMSVILRT 299 Query: 252 AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311 AGA+RTK E+KRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EI+ Sbjct: 300 AGANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDIREIL 359 Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371 VSGE GYREAKDFM++LMPS+A++V+ Y D PIF R+G+E QLD + +VTL S GY+ Sbjct: 360 VSGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYL 419 Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431 IINQTEALV+IDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGLIVVDFIDME Sbjct: 420 IINQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDME 479 Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 EK+NNR+VEKK+KE LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST +VC +C G G Sbjct: 480 EKRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTG 539 Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 +IRS SS+AL I+R +E+YLL+++ +I V T + LY+LN KR + + E RFGV I+ Sbjct: 540 HIRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEIS 599 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + ++ F I+KG+P V + D I + ++ Sbjct: 600 IDADESVENQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEISVEEDETEEEARTDVQA 659 Query: 612 LEDIQDN 618 E+ + Sbjct: 660 GEERSEE 666 Score = 52.3 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 748 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 807 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 808 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 867 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 868 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 919 >gi|332185613|ref|ZP_08387361.1| ribonuclease, Rne/Rng family domain protein [Sphingomonas sp. S17] gi|332014591|gb|EGI56648.1| ribonuclease, Rne/Rng family domain protein [Sphingomonas sp. S17] Length = 881 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 316/620 (50%), Positives = 410/620 (66%), Gaps = 10/620 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA H EETRV V++ NR+EE DFES +KQ+KGNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP DR+AL + + A + ++ +D + Sbjct: 61 RHGFLAFSEIHPDYYQIPKEDREAL-----LREEAEHAAEEAALRAELDAEDDEDHDGED 115 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 + ++E A S V D + + + +R+Y IQ+VI RQ+LLVQI Sbjct: 116 HDDHADDHHDDEDGEGAPRPKKSTVNDDQVEALRQRRQNLRRRYKIQDVIHRRQVLLVQI 175 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK I + +P+ Sbjct: 176 VKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIMAEMALPST 235 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304 MG I+RTAG RTK EIKRDF+YL RLWD +RE L+S AP L+Y + +LIKRAIRD+Y Sbjct: 236 MGCIVRTAGLQRTKTEIKRDFDYLARLWDGIREKTLHSSAPTLIYGDSDLIKRAIRDIYN 295 Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVT 364 ++I E+IV GE+GYR+AKDFM+LLMP++AR V+QY D P+F R+ +E QL +++ V Sbjct: 296 REIEEVIVEGEEGYRQAKDFMRLLMPAHARRVKQYADAVPLFQRAHVEDQLAAMYNPVVQ 355 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424 L S GY++IN TEALVSID+NSGRSTREH IE TA TNLEAA+EIARQLRLRD+AGL+V Sbjct: 356 LKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAQEIARQLRLRDMAGLVV 415 Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 +DFIDM+ N R VEK +KE+LK DRAR+QVG IS+FGL+EMSRQR+R+ VLE++T+ C Sbjct: 416 IDFIDMDNNSNVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTRPC 475 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544 +C+G G +R+ SS LS LR +E+ + + + + +Y+LN+KRA I E E Sbjct: 476 PHCEGTGLVRTASSSGLSALRLIEDEAARGRGSILTLRASQEAAVYVLNRKRADIAEIED 535 Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 R+GV++ ++ E +E P + D P + + + + E Sbjct: 536 RYGVTVEIIPDREEEGARMTVEASGP-----PPAYAPKIDMLLPVEEDEDDLIDEIEEEE 590 Query: 605 PIPKSESLEDIQDNIVSEES 624 E + E Sbjct: 591 EEEVEEEATEAASPREPRED 610 >gi|302383303|ref|YP_003819126.1| ribonuclease, Rne/Rng family [Brevundimonas subvibrioides ATCC 15264] gi|302193931|gb|ADL01503.1| ribonuclease, Rne/Rng family [Brevundimonas subvibrioides ATCC 15264] Length = 910 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 306/636 (48%), Positives = 399/636 (62%), Gaps = 45/636 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ MLIDA+H EETRV ++ +VEE DFES+ K+Q++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKTMLIDAAHAEETRVAIVDGRQVEEFDFESKTKRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+A++ E D ++ ++ D Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPAADREAIMAE--AHSADDDSDDENARDSDDGDSEGGMA 118 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE E + ++ R+Y IQ+VIK RQIL Sbjct: 119 EE-----------------------------------ERLKRRLMRRYKIQDVIKRRQIL 143 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VK+ERG KGAA+TT+LSLAGRY VLMPNT KG ISRKIT DRK LK A L+ Sbjct: 144 LVQVVKDERGGKGAALTTWLSLAGRYCVLMPNTGKGGGISRKITQATDRKRLKAAASALD 203 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VP GMG+I+RTAGA RTK EIKRD+EYL+RLW+ +RE L S AP L+YEE NL++RA+R Sbjct: 204 VPRGMGLIIRTAGAKRTKAEIKRDYEYLLRLWETIRETTLASHAPSLIYEEENLVRRAVR 263 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ KD I V G +G++EA+DFM++LMPS A+ V Y+ P+F +GIE L +HQ Sbjct: 264 DMFDKDFDGIQVEGVEGFKEARDFMRVLMPSQAKKVHLYQGSKPLFAANGIEELLTQIHQ 323 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN----LEAAEEIARQLRL 416 V L S GY++INQTEALV+IDVNSGR+T+E +E TA +TN +EAA RQLRL Sbjct: 324 PVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEATAFKTNCEAAVEAA----RQLRL 379 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RDLAGL+V+DFIDM+E KNNR+VE+ LK+ L DRAR+Q+G IS FGL+E+SRQR R V Sbjct: 380 RDLAGLVVIDFIDMDESKNNRTVERILKDELSFDRARIQMGRISGFGLMEISRQRRRLGV 439 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 LE T+VC +C+GAG +RS S AL +LR+V+ + A +I + S V LY+LN KR Sbjct: 440 LEGATEVCPHCQGAGRVRSAESAALMVLRAVDIEAGKNGAGSINLKVSSAVALYILNHKR 499 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596 + R G+++ + I L IE+ + V V +D Sbjct: 500 DYLQRLLERRGLAVIIQIDDRLGQGESAIERTETNEDFVAPEAVVSLSDLDDDFDDAAYS 559 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 D ++ E D +++ R R Sbjct: 560 DEDDNDDDDDFIADEDESALDREDTDDDEPRERAER 595 >gi|254419844|ref|ZP_05033568.1| ribonuclease, Rne/Rng family protein [Brevundimonas sp. BAL3] gi|196186021|gb|EDX80997.1| ribonuclease, Rne/Rng family protein [Brevundimonas sp. BAL3] Length = 926 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 299/631 (47%), Positives = 403/631 (63%), Gaps = 40/631 (6%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRV ++ ++EE DFES K+Q++GNIYLAKVTRVEPSLQAAF++YGGN Sbjct: 1 MLIDAAHPEETRVAIVDGRQIEEFDFESRAKRQLRGNIYLAKVTRVEPSLQAAFIEYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP +DR+A++ E++ D + + D Sbjct: 61 RHGFLAFNEIHPDYYQIPVADREAIMAEAHDDDDDDDLGRESDDDADPEAALADE----- 115 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 E + ++ R+Y IQ+VIK RQILLVQ+ Sbjct: 116 ---------------------------------ERLKRRLMRRYKIQDVIKRRQILLVQV 142 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 VK+ERG KGAA+TT+LSLAGRY VLMPNT KG ISRKITN DR+ LK LEVP G Sbjct: 143 VKDERGAKGAALTTWLSLAGRYCVLMPNTGKGGGISRKITNTSDRRRLKSAVSALEVPKG 202 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304 MG+I+RTAGA RTK EIKRD++YL+RLW+ +RE L S AP ++YEE NL++RA+RD++ Sbjct: 203 MGLIIRTAGAKRTKAEIKRDYQYLLRLWETIRETTLASHAPSVIYEEENLVRRAVRDMFD 262 Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVT 364 KD I V G +G++EA+DFM++LMPS A+ V Y P+F +GIE L +HQ V Sbjct: 263 KDFDGIQVEGVEGFKEARDFMRVLMPSQAKKVHLYRGSRPLFAANGIEELLTQIHQPVVP 322 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424 L S GY++INQTEALV+IDVNSGR+T+E +E TA +TN+EAAEE ARQLRLRDLAGL+V Sbjct: 323 LKSGGYLVINQTEALVAIDVNSGRATKERNVEQTAFKTNMEAAEEAARQLRLRDLAGLVV 382 Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 +DFIDM+E KNNR+VE+ LK++L DRAR+Q+G IS FGL+E+SRQR R V+E T+ C Sbjct: 383 IDFIDMDEGKNNRTVERVLKDALSSDRARIQMGRISPFGLMEISRQRRRLGVIEGATEAC 442 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544 +C+G G IRS S AL LR+V+ + A +++ + V LY+LN KRA + Sbjct: 443 PHCQGTGRIRSAESAALMTLRAVDIEAGKNGAGVVVLKVCTAVGLYILNHKRAYLQSLLE 502 Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 R G+++ V I L I++ + V ++ + +D ++ ++ Sbjct: 503 RRGLNVIVQIDDSLGQGEHNIDRTETNEDFV--APEIEMPNLDDDFDASLYEDEDEDDDE 560 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 I + E+ + + E+S + R R Sbjct: 561 EIVGDDEDEEDVEALDREDSDDDEPRERAER 591 >gi|197105305|ref|YP_002130682.1| ribonuclease, Rne/Rng family protein [Phenylobacterium zucineum HLK1] gi|196478725|gb|ACG78253.1| ribonuclease, Rne/Rng family protein [Phenylobacterium zucineum HLK1] Length = 896 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 310/595 (52%), Positives = 402/595 (67%), Gaps = 26/595 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ MLIDA+H EETRVVV+ NRVEE DFES+++KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MSKTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +D + + + Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVAD-------------------------REALLREEAE 95 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ E+ + + +DV ++ R+Y IQEVI+ RQI+ Sbjct: 96 EDDDDRHEPRARAPEDEDEVDLSGSADDEDDVVEEELARRRRRLMRRYKIQEVIRRRQIM 155 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKIT DRK LK I + L+ Sbjct: 156 LVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTATDRKRLKSIVQSLD 215 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VPAGMG+I+RTAGA RTK EIKRD++YL+RLW+N+RE L+S+AP L+YEE +L+KRAIR Sbjct: 216 VPAGMGLIVRTAGAKRTKAEIKRDYDYLLRLWENIRETTLHSIAPALIYEEEDLVKRAIR 275 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DLY KD+ + V GE G++EA+DFM++LMPS A+ V+ Y +P P++ + +E L ++ Sbjct: 276 DLYDKDVDNVWVEGEAGFKEARDFMRMLMPSQAKKVQLYREPTPLYVKHKVEDHLSQIYS 335 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++INQTEALV+IDVNSGR+TRE IE TAL+TN+EAAEE ARQLRLRDLA Sbjct: 336 PVVPLRSGGYLVINQTEALVAIDVNSGRATRERNIEATALKTNMEAAEEAARQLRLRDLA 395 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM+E KNNR+VEKKLK+ LK DRARVQ+G IS FGL+E+SRQR R+ VLE T Sbjct: 396 GLIVIDFIDMDEAKNNRAVEKKLKDCLKDDRARVQMGKISPFGLMEISRQRRRTGVLEGT 455 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T VC +C G G +RS S AL+ LR++E L+ + V LY+LN+KR + Sbjct: 456 THVCEHCGGTGRVRSVESSALAALRALEIEALKG-GGEATLTVPRAVGLYILNEKRGHLA 514 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 FG+ + V+I ++A IE+ + + + + A + Sbjct: 515 RLHHAFGLFVTVLIDDDMAHAEHGIERTASETRAEHAAALAPTAAGAVPPAEEAY 569 >gi|114771118|ref|ZP_01448558.1| ribonuclease, Rne/Rng family protein [alpha proteobacterium HTCC2255] gi|114548400|gb|EAU51286.1| ribonuclease, Rne/Rng family protein [alpha proteobacterium HTCC2255] Length = 870 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 316/812 (38%), Positives = 441/812 (54%), Gaps = 104/812 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KMLIDA+H EETRVVV+ N+V+E DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MPKKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQ----------ALLKESNIAQTDS---------- 100 YGGNRHGFL F EIHPDYYQIP +DR+ L+E Sbjct: 61 YGGNRHGFLSFAEIHPDYYQIPVADREALIAEEEAYTKSLEEEANIAQQKKSRIRKRKAK 120 Query: 101 -----------------EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 E ++ D +++ + ++I+ + Sbjct: 121 VIAEDANNDVTTSSDIIENPSETHEVVDDADSKKDNIDSDKSVDEDENNKSSDNILDNID 180 Query: 144 DVVSNVE---------------------------DVKGGSPEDVPKKFKRQYCIQEVIKN 176 +++ E D K R+Y IQEVIK Sbjct: 181 PEITSDESIDTNINDSVELEMDNTQSDNGIESVADDDVEEEVRPRKPRPRRYKIQEVIKV 240 Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 RQILL+Q+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK +KEI Sbjct: 241 RQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVQDRKKIKEIT 300 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 L+VP G G+I+RTAGA R + +I RD+EYLMR W +R++ L S+AP +Y EG++IK Sbjct: 301 SELDVPKGAGLIVRTAGAKRNRDDILRDYEYLMRQWTQIRDITLESIAPTQIYAEGDIIK 360 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R+IRDLY DI EIIV GE+G+ AK +M +LMPS+ + V+QY++ P++ R +E L Sbjct: 361 RSIRDLYNNDIDEIIVEGERGFEAAKAYMTMLMPSHVKRVKQYKNKMPLYARYQVENYLG 420 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 + V L S GY++I TEALV++DVNSG++T+E IE TAL+TNLEAA+E+ARQLRL Sbjct: 421 GMFNPTVQLKSGGYIVIGVTEALVAVDVNSGKATKESSIEKTALKTNLEAADEVARQLRL 480 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RDLAGLIV+DFIDMEE++NN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR+R + Sbjct: 481 RDLAGLIVIDFIDMEERRNNIAVEKRMKDKLKSDRARIQVGRISGFGLMEMSRQRLRPGM 540 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 LE+TTK C +C G G +RS S ALSILR +EE ++ I + YLLN KR Sbjct: 541 LEATTKECPHCLGTGLVRSDDSQALSILREIEEEAIRKRTKEIQATVPVGISNYLLNHKR 600 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK---- 592 I E+++ +SI + + + +EK ++ + + + + Sbjct: 601 ENIALIESQYAISIIIEASASMIGTDYELEKRKTSSRIIADVFDMPTAREMEAAANIDVT 660 Query: 593 ----------------------------------NIECVWQDEALLPIPKSESLEDIQDN 618 + + E + S + + Sbjct: 661 KSTEDAETSTNLDDDDKPKKRRRRRRRKPRKDEIAPDTSNEAEDVNQGDAPSSDKSNIVS 720 Query: 619 IVSEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + + K + +R+ + + T+ + Q+V++ S ++ + Sbjct: 721 LEPAKEQPLKPKAVKSKRKPKIKDITEIEINISEKPSDAKQSVVEISEEVKPKKRKRRTK 780 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 +E +N D+ P S P+ + S Sbjct: 781 AQIEADEAEAKKNKDLEKPKKSQPKAKKSAGK 812 >gi|87200332|ref|YP_497589.1| ribonuclease E [Novosphingobium aromaticivorans DSM 12444] gi|87136013|gb|ABD26755.1| RNAse E [Novosphingobium aromaticivorans DSM 12444] Length = 935 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 326/728 (44%), Positives = 425/728 (58%), Gaps = 47/728 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLIDA H EETRV VL+ NR+EE DFES KQIKGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MTTRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK-------------------ESNIAQTDSE 101 +GGNRHGFL F EIHPDYYQIP DR+ALL + + A + Sbjct: 61 FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAHAEEEAALRAAEDGDDEDYADGEGY 120 Query: 102 AVADDVTHGDVTIPNDHSLEE--------------------VAPIANFSQETEEESIISA 141 + VT D + + + E S++ Sbjct: 121 DSDEGVTEVDTSEKDQVATIEGGVVENGFDHEGEEGEDAEASEDGEGESEDNGRRRGRQQ 180 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + +R+Y IQ+VI+ RQ+LLVQ+VKEERGNKGAA+TTYLS Sbjct: 181 GRRRQGRSQGKEADELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLS 240 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN+S G ISRKI + DRK LK I LE+P M I+RTAG RTK EI Sbjct: 241 LAGRYCVLMPNSSHGGGISRKINSASDRKRLKTIISELELPRSMSCIVRTAGLQRTKPEI 300 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRDF+YL RLWD +RE + SVAP L++ + +LIKRAIRD+Y +DI E++V GE GYR A Sbjct: 301 KRDFDYLARLWDEIRERTMKSVAPALIHSDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAA 360 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 KDFMKLLMPS+A+ V+ Y DP P+F R G E QL +++ V L S GY++IN TEALVS Sbjct: 361 KDFMKLLMPSHAKRVKAYADPVPLFQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVS 420 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NSGRST+EH IE TA+ TNLEAA EIARQLRLRD+AGL+V+DFIDME N R VEK Sbjct: 421 IDINSGRSTKEHGIEQTAVATNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEK 480 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +K++LK DRAR+QVG IS FGL+EMSRQR+R+ VLE+TT+ C +C G+G +R+ SS L Sbjct: 481 AMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGL 540 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S LR +E+ + + + ++ + +Y+LN KRA + E E R+GV++ V+ E Sbjct: 541 SALRLIEDEAAKGKGNVVTLYASQEAAVYVLNAKRADLAEIEERYGVTVEVIPEGENEGA 600 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + P + + V +D E Sbjct: 601 KMRV--------ASRGPKPEFVPRFEPIVEPEEDDVVEDAYEDEEEVEERAPRGNRAAEG 652 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 +E +R+RR+RRR D + G +V + + + D E + + + Sbjct: 653 DEGERSDGRRKRRKRRRGRNRDRREDGTDGEVETSLDDAEADTDADAEGDEAEGNEAATS 712 Query: 682 GAHGFTEN 689 + + Sbjct: 713 DENADEND 720 >gi|149184655|ref|ZP_01862973.1| ribonuclease [Erythrobacter sp. SD-21] gi|148831975|gb|EDL50408.1| ribonuclease [Erythrobacter sp. SD-21] Length = 913 Score = 444 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 317/598 (53%), Positives = 396/598 (66%), Gaps = 43/598 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +MLIDA H EETRV VL+ NR+EE DFES K+QIKGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MATRMLIDARHPEETRVAVLKGNRIEEFDFESADKRQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDR--------------QALLKESNIAQT---DSEAV 103 +GGNRHGFL F EIHPDYYQIP DR Q L E D Sbjct: 61 FGGNRHGFLAFSEIHPDYYQIPKEDRDALLAAEAEVAEEEQRLRAEEEERGEMPGDEYDA 120 Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED------------ 151 D+ + LEEV T EE + + D + ED Sbjct: 121 EDESAEALAEDLAEDGLEEVDTSDKDDVATIEEGQLDGDEDDDDDSEDEGDDKPKGRGRR 180 Query: 152 --------------VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 + +R+Y IQ+VI+ RQ+LLVQ+VKEERGNKGAA+T Sbjct: 181 GRGRRQGKGGRTRAKEVDEARAKRMALRRKYKIQDVIQRRQVLLVQVVKEERGNKGAALT 240 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 TYLSLAGRY+VLMPN+S G ISRKI + DRK LK++ L +P MG+I+RTAG SRT Sbjct: 241 TYLSLAGRYTVLMPNSSHGGGISRKINSASDRKRLKQVVSDLSLPRSMGLIVRTAGLSRT 300 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 K EIKRDF+YL RLWD +RE L+S AP L++ + +LIKRAIRD+Y ++I E++V GE G Sbjct: 301 KTEIKRDFDYLARLWDEIRERTLSSAAPALIHSDSDLIKRAIRDIYNREIEEVVVEGEDG 360 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 Y+ AK FMK+LMPS+AR V+QY DP P+F R G E QL +++ V L S GY++IN TE Sbjct: 361 YKSAKAFMKMLMPSHARRVKQYADPVPLFQRYGAEDQLKAMYDPVVQLKSGGYLVINPTE 420 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 ALVSID+NSGRST+EH IE TAL TNLEAA+EIARQLRLRD+AGL+V+DFID E N R Sbjct: 421 ALVSIDINSGRSTKEHNIEQTALHTNLEAAKEIARQLRLRDMAGLVVIDFIDQEHHSNTR 480 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VE+ +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ VLE+TT+ C +C G G +R+ S Sbjct: 481 KVERAMKDALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRECPHCDGTGLVRTAS 540 Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 S LS LR +EE + I + ++ +YLLN+KRA +VE R+GV++ VV Sbjct: 541 SAGLSALRLIEEEAAKGKGTKIRLAASTEAAVYLLNEKRAELVEIGERYGVTVEVVPE 598 >gi|260753254|ref|YP_003226147.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552617|gb|ACV75563.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 912 Score = 444 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 322/718 (44%), Positives = 423/718 (58%), Gaps = 30/718 (4%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 KMLIDA H EETRV V++ NR+EE DFES ++Q+KGNIYLAKVTRVEPSLQAAFVDYGG Sbjct: 5 KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 NR GFL F EIHPDYYQIP D A + + ++ E Sbjct: 65 NRQGFLAFSEIHPDYYQIPRED----------------REALLREEEEYSARHNKQQESE 108 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 E AN+D + N+ + + Y IQ+VI+ RQ+LLVQ Sbjct: 109 DDEEGEDLSDSEAIRNDANDDSLENLRN-------RRRHFGRHHYRIQDVIRRRQVLLVQ 161 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK I L +P+ Sbjct: 162 VVKEERGNKGAALTTYLSLAGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPS 221 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 MG I+RTAG RTK EIKRDF+YL RLWD +RE L S AP L+Y + +L+KRAIRD+Y Sbjct: 222 SMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIY 281 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 ++I EI+V G+ GYR A++FMKLLMPS+ R VR Y DP P+F R G+E QL++++Q V Sbjct: 282 SREIDEILVEGDDGYRAARNFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIV 341 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY++IN TEALVSID+NSGRSTREH IE TA TNLEAA EIARQLRLRD+AGLI Sbjct: 342 QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLI 401 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDME N R VEK +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ +LE++T Sbjct: 402 VIDFIDMESSANIRRVEKAMKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVP 461 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +C+G+G + + S L LR +E+ + I V T D +Y+LN+KR + E Sbjct: 462 CPHCQGSGLMLTTPSAGLMALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIE 521 Query: 544 ARFGVSINVVIGIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 +GV+I + + +E G P + + + S D E ++ Sbjct: 522 TLYGVTILIDGDPLRGNNQISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIE 581 Query: 603 LLPIPKSESLED------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + ++ + +++ + E +R + + + + + S Sbjct: 582 AEEVIEAPFRRNHRQNMARRNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEH 641 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 S N E +E + + P TP ES S + P+ K Sbjct: 642 SRRNRRSRRGRRGGRRRNGENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEK 699 >gi|241761340|ref|ZP_04759428.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374247|gb|EER63744.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 912 Score = 444 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 322/718 (44%), Positives = 423/718 (58%), Gaps = 30/718 (4%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 KMLIDA H EETRV V++ NR+EE DFES ++Q+KGNIYLAKVTRVEPSLQAAFVDYGG Sbjct: 5 KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 NR GFL F EIHPDYYQIP D A + + ++ E Sbjct: 65 NRQGFLAFSEIHPDYYQIPRED----------------REALLREEEEYSARHNKQQESE 108 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 E AN+D + N+ + + Y IQ+VI+ RQ+LLVQ Sbjct: 109 DDEEGEDLSDSEAIRNDANDDSLENLRN-------RRRHFGRHHYRIQDVIRRRQVLLVQ 161 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK I L +P+ Sbjct: 162 VVKEERGNKGAALTTYLSLAGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPS 221 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 MG I+RTAG RTK EIKRDF+YL RLWD +RE L S AP L+Y + +L+KRAIRD+Y Sbjct: 222 SMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIY 281 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 ++I EI+V G+ GYR A++FMKLLMPS+ R VR Y DP P+F R G+E QL++++Q V Sbjct: 282 SREIDEILVEGDDGYRAARNFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIV 341 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY++IN TEALVSID+NSGRSTREH IE TA TNLEAA EIARQLRLRD+AGLI Sbjct: 342 QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLI 401 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDME N R VEK +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ +LE++T Sbjct: 402 VIDFIDMESSANIRRVEKAMKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVP 461 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +C+G+G + + S L LR +E+ + I V T D +Y+LN+KR + E Sbjct: 462 CPHCQGSGLMLTTPSAGLMALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIE 521 Query: 544 ARFGVSINVVIGIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 +GV+I + + +E G P + + + S D E ++ Sbjct: 522 TLYGVTILIDGDPLRGNNQISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIE 581 Query: 603 LLPIPKSESLED------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + ++ + +++ + E +R + + + + + S Sbjct: 582 AEEVIEAPFRRNHRQNMARRNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEH 641 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 S N E +E + + P TP ES S + P+ K Sbjct: 642 SRRNRRSRRGRRGGRRRNGENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEK 699 >gi|326387476|ref|ZP_08209085.1| ribonuclease E [Novosphingobium nitrogenifigens DSM 19370] gi|326208132|gb|EGD58940.1| ribonuclease E [Novosphingobium nitrogenifigens DSM 19370] Length = 928 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 319/700 (45%), Positives = 409/700 (58%), Gaps = 35/700 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA H EETRV VL+ NR+EE DFES KQIKGNIYLAKVTRVEPSLQAAFVD+GGN Sbjct: 1 MLIDARHQEETRVAVLKGNRIEEFDFESSDHKQIKGNIYLAKVTRVEPSLQAAFVDFGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT-------------------------- 98 RHGFL F EIHPDYYQIP DR+ALL E Sbjct: 61 RHGFLAFSEIHPDYYQIPKEDREALLAEEASHAEAEAALRAADEDDEDDFAEGDAFDDGE 120 Query: 99 ---DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155 + + D ++ + +E+++ + + Sbjct: 121 GVTEVDGTEKDQVATIEGGVIENGDDAEEAATEEGEESDDGRRRGRGRRRQGRAQTKEAD 180 Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 +R+Y IQ+VI+ RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN+S Sbjct: 181 ELRARRLALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNSSH 240 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 G ISRKI + DRK LK I LE+P M I+RTAG RTK EIKRDF+YL RLWD + Sbjct: 241 GGGISRKINSAADRKRLKTIISELELPKSMSCIVRTAGLQRTKPEIKRDFDYLARLWDEI 300 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 RE L+S AP L++ + +LIKRAIRD+Y ++I E++V GE GYR AKDFMKLLMPS+A+ Sbjct: 301 RERTLHSSAPALIHSDSDLIKRAIRDIYNREIEEVVVEGEAGYRAAKDFMKLLMPSHAKR 360 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 V+QY DP P+F R G E QL +++ V L S GY++IN TEALVSID+NSGRST+EH I Sbjct: 361 VKQYVDPVPLFQRYGAEDQLTAMYDPVVQLRSGGYLVINPTEALVSIDINSGRSTKEHGI 420 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 E TAL TNLEAA EIARQLRLRD+AGL+V+DFIDME N R VEK +KE+LK DRAR+Q Sbjct: 421 EATALSTNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKEALKDDRARIQ 480 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 VG IS FGL+EMSRQR+R+ VLE+TT+ C +C G+G +R+ SS LS LR +E+ + Sbjct: 481 VGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRMIEDEAAKGR 540 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE----KGSPV 571 + ++ + +Y+LN KR + E E R+GV++ V+ E + K Sbjct: 541 GSIVTLYASQEAAIYVLNAKRGDLAEIEDRYGVTVEVIPEGENEGAKMRVASRGPKPEFT 600 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 V D + +++ D+ ++ E R R Sbjct: 601 PRFEPIVELVEEDVADEEDESDVDAEDNDDERGESRDGDNGE--GSGRRKRRRRRRGRNR 658 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 RR ++ DA + D + Sbjct: 659 DRREDGTPEGSETDDADGSDEGDEAGEDAGDDTETGASAE 698 >gi|56551089|ref|YP_161928.1| Rne/Rng family ribonuclease [Zymomonas mobilis subsp. mobilis ZM4] gi|56542663|gb|AAV88817.1| ribonuclease, Rne/Rng family [Zymomonas mobilis subsp. mobilis ZM4] Length = 912 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 322/718 (44%), Positives = 423/718 (58%), Gaps = 30/718 (4%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 KMLIDA H EETRV V++ NR+EE DFES ++Q+KGNIYLAKVTRVEPSLQAAFVDYGG Sbjct: 5 KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 NR GFL F EIHPDYYQIP D A + + ++ E Sbjct: 65 NRQGFLAFSEIHPDYYQIPRED----------------REALLREEEEYSARHNKQQESE 108 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 E AN+D + N+ + + Y IQ+VI+ RQ+LLVQ Sbjct: 109 DDEEGEDLSDSEAIRNDANDDSLENLRN-------RRRHFGRHHYRIQDVIRRRQVLLVQ 161 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKEERGNKGAA+TTYLSLAGRY VLMPNTS G ISRKI+N DRK LK I L +P+ Sbjct: 162 VVKEERGNKGAALTTYLSLAGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPS 221 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 MG I+RTAG RTK EIKRDF+YL RLWD +RE L S AP L+Y + +L+KRAIRD+Y Sbjct: 222 SMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIY 281 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 ++I EI+V G+ GYR A++FMKLLMPS+ R VR Y DP P+F R G+E QL++++Q V Sbjct: 282 SREIDEILVEGDDGYRAARNFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIV 341 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY++IN TEALVSID+NSGRSTREH IE TA TNLEAA EIARQLRLRD+AGLI Sbjct: 342 QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLI 401 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDME N R VEK +K++LK DRAR+QVG IS+FGL+EMSRQR+R+ +LE++T Sbjct: 402 VIDFIDMESSANIRRVEKAMKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVP 461 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +C+G+G + + S L LR +E+ + I V T D +Y+LN+KR + E Sbjct: 462 CPHCQGSGLMLTTPSAGLMALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIE 521 Query: 544 ARFGVSINVVIGIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 +GV+I + + +E G P + + + S D E ++ Sbjct: 522 TLYGVTILIDGDPLRGNNQISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIE 581 Query: 603 LLPIPKSESLED------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + ++ + +++ + E +R + + + + + S Sbjct: 582 AEEVIEAPFRRNHRQNMARRNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEH 641 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 S N E +E + + P TP ES S + P+ K Sbjct: 642 SRRNRRSRRGRRGGRRRNGENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEK 699 >gi|85374182|ref|YP_458244.1| ribonuclease [Erythrobacter litoralis HTCC2594] gi|84787265|gb|ABC63447.1| ribonuclease [Erythrobacter litoralis HTCC2594] Length = 910 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 325/766 (42%), Positives = 437/766 (57%), Gaps = 65/766 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +MLIDA H EETRV VL+ NR+EE DFES KQIKGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MATRMLIDARHTEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT-----------------DSEAV 103 +GGNRHGFL F EIHPDYYQIP +DR+ LL E A D Sbjct: 61 FGGNRHGFLAFSEIHPDYYQIPQADREKLLAEEAEAAEEEARLRAEEEDRGEMPGDEYDA 120 Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED------------ 151 D+ + + LEE+ T EE + +++D + +D Sbjct: 121 EDESSGALAEDLAEDGLEEIDTSEKDKVATIEEGQLDSDDDDDDDSDDDDSDDDDDDDNN 180 Query: 152 --------------------------------VKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 + + + +R+Y IQ+VI+ RQ+ Sbjct: 181 GDNGKSRGRRGRGRGRGRHQGKGKGRGGKSRAKEVDAVRAKRQALRRRYKIQDVIQRRQV 240 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 +LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPN+S G ISRKI++ DRK LK++ L Sbjct: 241 MLVQVVKEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQVVSDL 300 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 +P MG+I+RTAG SRTK EIKRDF+YL RLWD +RE L+S AP L++ + +LIKRAI Sbjct: 301 SLPKQMGLIVRTAGLSRTKTEIKRDFDYLARLWDEIREKTLSSSAPSLIHSDSDLIKRAI 360 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD+Y ++I E++V GE+GY+ AK FMKLLMPS+AR V+ Y DP P+F R G E QL +++ Sbjct: 361 RDIYNREIEEVVVEGEEGYKLAKSFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMY 420 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++IN TEALVSID+NSGRST+EH IE TA TN+EAA+EIARQLRLRD+ Sbjct: 421 DPVVQLKSGGYLVINPTEALVSIDINSGRSTKEHGIEQTATATNIEAAKEIARQLRLRDM 480 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 AGLIV+DFIDME N R VE+ +K++LK DRAR+QVG IS FGL+EMSRQR+R+ VLE+ Sbjct: 481 AGLIVIDFIDMEYNSNVRKVERAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEA 540 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 TT+ C +C G G +R+ SS LS LR +E+ + I + ++ +YLLN KRA + Sbjct: 541 TTRDCPHCDGTGLVRTASSAGLSALRLIEDEAAKGKGTVISLKASTEAAVYLLNSKRADL 600 Query: 540 VEYEARFGVSINVVIGIELADKLFYI--EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 E E R+ V++ VV E + P +A D + D + Sbjct: 601 QEIEDRYNVTVEVVPEGEDEGAKMSVGSSGPRPSEAPKFEPIVDDDDDEEEIEDDASDDD 660 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +D+ P + + ++++ ++ D + Sbjct: 661 DEDDDGQPRKRRRRRRGGRGRNKNKQNDRSDGDDDDSDEDDSDDSETSDDDDDGKPKKRR 720 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGA--HGFTENYDVSIPPVSTPE 701 + + ++ + +E +P V+ P+ Sbjct: 721 RRGGRRRGGRGRNKGDADSDSKDDESPLEEVSEQVKEDMPVVAGPD 766 Score = 37.3 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 44/157 (28%), Gaps = 5/157 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + V +P + + + K ++ ED + +++ + Sbjct: 750 EVSEQVKEDMPVVAGPDGSPETAEAAAEEEKPKKRRAPRKKKADEDTKAQASADDKSEEK 809 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 KRR R+++ A + D + + N + Sbjct: 810 PKRRPRKKKVDEAAEKADDKASEKAAKKETEAKPKPKRATRSKKPAAGNDEGEASKTGKG 869 Query: 689 NYDVSIPPVSTP----EMESSNSSSDPIVKKTRWWKR 721 + + + + + D ++ WW+R Sbjct: 870 DAAAKPEAETDKGAGGKAANEKTDGDGKPRR-GWWQR 905 >gi|85708771|ref|ZP_01039837.1| ribonuclease [Erythrobacter sp. NAP1] gi|85690305|gb|EAQ30308.1| ribonuclease [Erythrobacter sp. NAP1] Length = 904 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 334/793 (42%), Positives = 436/793 (54%), Gaps = 78/793 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +MLIDA H EETRV VL+ NR+EE DFES KQIKGNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MATRMLIDARHSEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL-----------------KESNIAQTDSEAV 103 +GGNRHGFL F EIHPDYYQIP SDR+ALL +E I + Sbjct: 61 FGGNRHGFLAFNEIHPDYYQIPQSDREALLAEEAEAAEEEARLRDEEEEEGITPGEEYDA 120 Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED------------ 151 D+ + LEE+ T E+ ++D + +D Sbjct: 121 EDESAEALAEDLAEDGLEEIDTSDKDKVSTIEDGASDDDDDDDQDEDDSEDEGEESSEDG 180 Query: 152 -----------------------------------VKGGSPEDVPKKFKRQYCIQEVIKN 176 + +R+Y IQ+VI+ Sbjct: 181 EDGDDGEKKPRRGRRGRGRRRQGGKKGQQKGRSRAKEVDEVRAKRMALRRRYKIQDVIQR 240 Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPN+S G ISRKI + DRK LK++ Sbjct: 241 RQVLLVQVVKEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKINSASDRKRLKQVV 300 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 L +P MG+I+RTAG SRTK EIKRDF+YL RLWD++R+ L S AP L++ + +LIK Sbjct: 301 SDLSLPKSMGLIVRTAGLSRTKTEIKRDFDYLARLWDDIRQTTLASTAPSLIHSDSDLIK 360 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 RAIRD+Y ++I E++V GE+GY+ AK FMK+LMPS+AR V+ Y DP P+F R G E QL Sbjct: 361 RAIRDIYNREIEEVVVEGEEGYKSAKAFMKMLMPSHARRVKAYSDPVPLFQRYGAEDQLR 420 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 +++ V L S GY+IIN TEALVSID+NSGRST+EH IE TAL TNLEAA EIARQLRL Sbjct: 421 AMYDPMVQLKSGGYLIINPTEALVSIDINSGRSTKEHGIEQTALHTNLEAAREIARQLRL 480 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RD+AGL+V+DFIDME N R VEK +KE+LK DRAR+QVG IS FGL+EMSRQR+R+ V Sbjct: 481 RDMAGLVVIDFIDMEYNSNVRKVEKAMKEALKNDRARIQVGRISGFGLMEMSRQRLRTGV 540 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 LE+TT+ C +C G G +R+ SS LS LR +E+ + I + ++ +YLLN+KR Sbjct: 541 LEATTRECPHCDGTGLVRTASSAGLSALRLIEDEAAKGKGSKICLEASTEAAVYLLNEKR 600 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596 +VE E R+GV + V+ E + P + D + + Sbjct: 601 HELVEIEQRYGVIVEVMPEGEDEGAKMKVSSQGPRPTEAPKFEPIVDDDEDEDDIPEDDG 660 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIR---------KRRRRRRRRRPATDHHDA 647 +D+ K + + TG + + D Sbjct: 661 SEEDDDAPKKKKRRRRRGGRGRGKKRQDTGSSEDGEDNSDDSDDSDASDGDEASEETSDD 720 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE-----M 702 G + E + LE + E+ V P PE Sbjct: 721 GEEKPKRRRRRGGRGRRKKTDETVTSEDAENLEEVSEQVKEDMTVVAGPDDAPETAGAMA 780 Query: 703 ESSNSSSDPIVKK 715 +++ +D ++ Sbjct: 781 AETDAKADGETEE 793 Score = 40.7 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 41/156 (26%), Gaps = 12/156 (7%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ +V + A + + + + + E K + + V E Sbjct: 757 EQVKEDMTVVAGPDDAPETAGAMAAETDAKADGETEEAPKEEKPKRKRAPRKKKVEEAPA 816 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + P + + + ++++ Sbjct: 817 EEAAPAEEAKVEEAPTEEEPKKKPARKRAPRKKKVEEAPAEEA------------PTEEA 864 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 TE+ + + ++ +D K+ WW+R Sbjct: 865 KTEDAAPAETAEEPASDDKADEQADGGKKRGGWWQR 900 >gi|307317882|ref|ZP_07597320.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti AK83] gi|306896644|gb|EFN27392.1| ribonuclease, Rne/Rng family [Sinorhizobium meliloti AK83] Length = 923 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 336/697 (48%), Positives = 416/697 (59%), Gaps = 75/697 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVT------ 113 YGGNRHGFL F EIHPDYYQIP +DRQALLK A+ D + D V Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTV 120 Query: 114 -----------------------------------------IPNDHSLEEVAPIANFSQE 132 + E P + + Sbjct: 121 AEVVAQAEAAEAAGEAAEAAAEKPKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDGEGD 180 Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI--------------QEVIKNRQ 178 E + + + + +++ + +D + I I+ + Sbjct: 181 KNEMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPR 240 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 +R + + L S S + N + Sbjct: 241 KQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 300 Query: 239 LEVPAGMGVILR-------------TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 L+ + I R TAGA+RTK+EIKRDFEYLMRLW+NVR L LNS AP Sbjct: 301 LQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAP 360 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 LVYEEG+LIKR+IRDLY KDISEI+VSGE+GY+EAK FMK+LMPS+A++V+ Y D HPI Sbjct: 361 CLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPI 420 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGRSTREH IEDTALQTNLE Sbjct: 421 FSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLE 480 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG IS+FGLL Sbjct: 481 AAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLL 540 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQRIR+SVLEST + C +C G G+IRSQSSVAL +LR +EE+LL+ T H+I V T Sbjct: 541 EMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTP 600 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 D+ LYLLNQKR++I +YE RFGVSI + + + F I++G PV+ V + + Sbjct: 601 DIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQILQFEP 660 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + ++ + DE + +E + + + Sbjct: 661 EPEDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQ 697 Score = 41.9 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 39/149 (26%), Gaps = 1/149 (0%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 ++ + E V D P E+ DI E + + + R Sbjct: 772 SRQDELAEAEGETGMAADAGEGVVDDAEAEVAPAEETSPDIAAAAAVEAAAEEPKPAKPR 831 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 R R++ A V +V+ + LE +I Sbjct: 832 RSRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDLSAI 891 Query: 695 PPVSTPEMESSNSSSDP-IVKKTRWWKRR 722 +P KK WW+RR Sbjct: 892 ATEPVVTSSKGEGEEEPTKPKKGGWWQRR 920 >gi|117925073|ref|YP_865690.1| ribonuclease E [Magnetococcus sp. MC-1] gi|117608829|gb|ABK44284.1| RNAse E [Magnetococcus sp. MC-1] Length = 984 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 263/713 (36%), Positives = 385/713 (53%), Gaps = 4/713 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +ML+DA+H EE RV +++D R+ +LD E+ K QIKGNIYL +VTRVEPSLQAAFVD Sbjct: 1 MTKRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 + R GFL +I+P YY F +++ + + + + ++ Sbjct: 61 FNDGRQGFLSVNDINPKYYPPEFRPEPDPIEDMDEQEEPEDLSDEMDGEEGDDSDDEPGN 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPED-VPKKFKRQYCIQEVIKNRQI 179 E+ A + E+ S + + E +R IQ+++K Q+ Sbjct: 121 EDGADDDASQGDASSEAEAKPREPSQSERPARRPRNNERANRGNRRRHIPIQDILKKGQL 180 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LL+Q+VKE RG KGA++TT +SLAGRY+VL+P S G ISRKI + RK LK + + Sbjct: 181 LLLQVVKEARGTKGASLTTNISLAGRYTVLLPENSGGGGISRKIMDNQARKALKTMLTEM 240 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 E+P + +I+RTAG RTK EI RD YL RLW ++E P L++EEG+LI R I Sbjct: 241 EIPQEVSLIIRTAGMERTKREIARDMSYLTRLWKTIQEKVEQHNTPTLIHEEGDLIIRTI 300 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDLY D+ EI++ G + YR KDFM+LLMP Y + V+ Y+D P+F R +E Q++S+H Sbjct: 301 RDLYSTDMEEILIDGGEAYRRGKDFMRLLMPRYVKAVQPYKDRIPLFSRYQVEHQIESMH 360 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 + ++L + GY++I TEALVSID+NSGRST+E +E+TA +TN++A +EIARQLRLRDL Sbjct: 361 ERTISLKAGGYLVIEPTEALVSIDINSGRSTKEKNVENTAFKTNMQAVDEIARQLRLRDL 420 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GLIV+DFIDMEEKK+N VEK+LKE+LK DRA++Q+G IS FGLLE+SRQR++ + ES Sbjct: 421 GGLIVIDFIDMEEKKHNLEVEKRLKEALKGDRAKIQLGKISQFGLLELSRQRMKPAFNES 480 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 +VC C G G IRS S A+ + R +EE + +I +DV YL N+KR + Sbjct: 481 NREVCPRCTGLGTIRSVESTAIRLFRCIEEDISSGRFSKLIYFAPADVANYLHNRKRFQM 540 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW- 598 V+ E + + + I EL F E+ + + + + E Sbjct: 541 VQLEQENNLELLIEIDPELQTPHFRKERIARPVQDEPVVKERPEPEEPTLVSEEDEPQEL 600 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 D+A ++ + + G R+ + + + Sbjct: 601 MDDAAEGGEENRTDPKKRKRRRKRRRGGREREEGAMGEETTSLNEEEMPSTEAPAMDDEA 660 Query: 659 VIDDSFDMYMEPSDITNHNLLENGA--HGFTENYDVSIPPVSTPEMESSNSSS 709 + D PS+ + S P ++S + Sbjct: 661 DDEGDGDEQANPSESAETTPDSPSKRRRRRRRRRRSTSQEESAPRLDSGDEEQ 713 >gi|150396178|ref|YP_001326645.1| ribonuclease [Sinorhizobium medicae WSM419] gi|150027693|gb|ABR59810.1| ribonuclease, Rne/Rng family [Sinorhizobium medicae WSM419] Length = 944 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 352/792 (44%), Positives = 446/792 (56%), Gaps = 84/792 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTH--------- 109 YGGNRHGFL F EIHPDYYQIP +DRQALL + + D + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARREDDIEPMETSAERKSASSTDS 120 Query: 110 --------------------------------------------GDVTIPNDHSLEEVAP 125 + + E P Sbjct: 121 VAEVVAQAEAAEAAGEAAEAQAAAEKPKAKAKPKRTRRAKPKASEETAASQESEAPEGGP 180 Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI--------------- 170 + + E + I + + +V+ + +D + I Sbjct: 181 SEDGESDKSEMAAIVETDSISEDVDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVAE 240 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 ++ K R+ +Q V + R V + + L S S + N Sbjct: 241 RQFRKPRKQYRIQEVIKRRQILLVQVAKEER-GNKGAALTTYLSLAGRYSVLMPNTARGG 299 Query: 231 NLKEIARGLEVPAGMGVILR-------------TAGASRTKIEIKRDFEYLMRLWDNVRE 277 + L+ + I R TAGA+RTK+EIKRDFEYLMRLW+NVR Sbjct: 300 GISRKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRT 359 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 L LNS AP LVYEEG+LIKR+IRDLY KDISEI+VSGE+GY+EAK FMK+LMPS+A++V+ Sbjct: 360 LTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQ 419 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGRSTREH IED Sbjct: 420 PYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIED 479 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 TALQTNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG Sbjct: 480 TALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVG 539 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 IS+FGLLEMSRQRIR+SVLEST + C +C G G+IRSQSSVAL +LR +EE+LL+ T H Sbjct: 540 RISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTH 599 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 +I V T D+ LYLLNQKR++I +YE RFGVSI + + + F I++G PV+ V Sbjct: 600 DISVRTTPDIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRI 659 Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + + + ++ E + ++E + + E + G +++RRRRRR Sbjct: 660 DQILQFEPEPEEEEEEEEVLIEEELDDEEAEETAAEHQDQQKGQPDDQGGRKRKRRRRRR 719 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 + A DA + ++ D ++ + L + + Sbjct: 720 GKGAGQGADAVSAESADAAEDEAGDEAAADDAEDELDAADSLNGDSEQKRKRRRRGKRGG 779 Query: 698 STPEMESSNSSS 709 E S Sbjct: 780 RRNRQEELAGSE 791 Score = 46.1 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 41/158 (25%), Gaps = 7/158 (4%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 Q + + + E V A +P + + + Sbjct: 784 QEELAGSEGETGATAETVEEPGEESVDSTAAEIPAVSAAEEAPADVAAAAAVEGVAEEPK 843 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL------ENGAHG 685 + RR R T + V+ + V++ + I + E Sbjct: 844 PAKPRRSRKKTTKTEEPAVNADEVAEKVVEAQPEPAEPAPQIVEEAVEEAVEDLEGAKPA 903 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDP-IVKKTRWWKRR 722 + +I S +P KK WW+RR Sbjct: 904 RSNRDLSAIASKPVVTSSKGESEEEPTKPKKGGWWQRR 941 >gi|296283817|ref|ZP_06861815.1| ribonuclease, Rne/Rng family [Citromicrobium bathyomarinum JL354] Length = 976 Score = 422 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 314/654 (48%), Positives = 400/654 (61%), Gaps = 54/654 (8%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA H EETRV VL+ NR+EE DFES KQIKGNIYLAKVTRVEPSLQAAFVD+GGN Sbjct: 1 MLIDARHAEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVDFGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQ------------------TDSEAVADD 106 RHGFL F EIHPDYYQIP DR ALL E A + +A D+ Sbjct: 61 RHGFLAFSEIHPDYYQIPKEDRDALLAEEAEAAEEEERLRAEEEEAGHMPGDEYDAEDDE 120 Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEE------------------------------ 136 + LEE+ T EE Sbjct: 121 SAEALAEDLAEDGLEEIDTSDKDKVSTIEEGQLSSDDDDDDDDDDSNGDDADASEGGNRR 180 Query: 137 ------SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190 + + +R+Y IQ+VI+ RQ+LLVQ+VKEERG Sbjct: 181 RGRRGRGGPRRQGQGKPRSRAKEVDEARARRQALRRRYKIQDVIQRRQVLLVQVVKEERG 240 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250 NKGAA+TTYLSLAGRY+VLMPN+S G ISRKI++ DRK LK++ L +P MG+I+R Sbjct: 241 NKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQVVGDLNLPRTMGLIVR 300 Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310 TAG SRTK EIKRDF+YL RLWD +RE L S AP L++ + +LIKRAIRD+Y ++I E+ Sbjct: 301 TAGLSRTKTEIKRDFDYLARLWDEIRERTLGSSAPSLIHSDSDLIKRAIRDIYNREIEEV 360 Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 +V GE+GY+ A+ FMKLLMPS+AR V+ Y DP P+F R G E QL ++++ V L S GY Sbjct: 361 VVEGEEGYKSARAFMKLLMPSHARRVKAYSDPVPMFQRYGAEDQLRAMYEPVVQLKSGGY 420 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 ++IN TEALVSID+NSGRST+EH IE TA TNLEAA+EIARQLRLRD+AGL+V+DFIDM Sbjct: 421 LVINPTEALVSIDINSGRSTKEHGIEQTATATNLEAAKEIARQLRLRDMAGLVVIDFIDM 480 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 E N R VE+ +K++LK DRAR+QVG IS FGL+EMSRQR+R+ VLE+TT+ C +C G Sbjct: 481 EHNSNIRKVERTMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECPHCDGT 540 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 G +R+ SS LS LR +E+ + I + ++ +YLLN KRA + E E R+GV++ Sbjct: 541 GLVRTASSAGLSALRLIEDEAAKGKGTTITLSASTEAAVYLLNAKRAELQEIEQRYGVTV 600 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 VV E + P + D ++ + ++ Sbjct: 601 EVVPEGEDEGAKMSVASSGPRPTEAPKFEPIVIDEAEDDFEDEADDSDTEDEDQ 654 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 39/155 (25%), Gaps = 2/155 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + PS + +++A + E++ Sbjct: 820 KDGAEDKPAPKRRSRAKKADTPSQAAAGDDKAEEQAEEKPAPKRRSRAKKPVEGEEQADA 879 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +K R+ R A ++ +++ + + + Sbjct: 880 GEKKAPARKPSARKTPAKPAASKQTEAQLTEDIAVVAGPEDTPADPQEAAEKSPSPSPAP 939 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + ++ P ++ WW+R Sbjct: 940 APAPAPAPSASADGSDDGNSDDDKP--RRGGWWQR 972 >gi|254455658|ref|ZP_05069087.1| ribonuclease E/G [Candidatus Pelagibacter sp. HTCC7211] gi|207082660|gb|EDZ60086.1| ribonuclease E/G [Candidatus Pelagibacter sp. HTCC7211] Length = 608 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 236/565 (41%), Positives = 354/565 (62%), Gaps = 19/565 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + IDASH ETRVV+ D+ +E+ ++E IK NIYL KV+R+EPSLQAAF+D Sbjct: 1 MEKNLYIDASHPNETRVVLKSDDNIEDYEYEGLKNNLIKNNIYLGKVSRIEPSLQAAFID 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G RHGFL F +I DYYQIP +D L K + E ++ +V + + L Sbjct: 61 FGRERHGFLSFNDIQSDYYQIPKAD---LEKIKEEEEKAREELSREVQAKEEENIAEGKL 117 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE PI + E+E ++++ ++ + K ++Y IQEVIK Q++ Sbjct: 118 EENDPI-----DVEKEISEEKDDEIDQKNNAIEEKEQKKENKFRFKRYKIQEVIKPNQVI 172 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++K+ERG KGAA++T++S+AG+Y VLMPNT KG ISRKI NP DRK ++ I +E Sbjct: 173 LVQVIKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPSDRKKIRTILNEIE 232 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I+RTAG+++TK EI D + L++ W +++ A+NS+AP L+++E +IKR +R Sbjct: 233 IPKEMGLIVRTAGSNKTKNEINNDLDTLIKTWSQIKDNAINSIAPSLIHQESEIIKRTLR 292 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y + IIV G +GY++A+ FMK++MPS+ + V++Y P+F IE +L+ + Sbjct: 293 DMYDDNTQNIIVEGNEGYKKAQAFMKMIMPSHVKKVKKYRGKVPLFINQNIEQKLNQIFD 352 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +E+ L S GY++IN TEALVSID+NSG S + +E TAL TN+EAA+EIARQ+++RDL+ Sbjct: 353 SEIKLKSGGYLVINPTEALVSIDINSGSSIKGKNVESTALDTNIEAAKEIARQIKIRDLS 412 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLI++DFIDM N R VE+KLKE + DRAR+Q+G ISNFGLLEMSRQR+R S ++ Sbjct: 413 GLIIIDFIDMLSYANRRLVERKLKEKCRTDRARIQIGRISNFGLLEMSRQRLRESAIKWK 472 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + S A +L++VE + A + + + +L + Sbjct: 473 VT-----------LTDESFAQKLLKTVELKAVINKAKFVELRVCEKISDFLKENFVDDLT 521 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 +E + ++I++V L + I Sbjct: 522 YFEKKNKMTIDIVSDSSLIIPEYII 546 >gi|71083434|ref|YP_266153.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1062] gi|71062547|gb|AAZ21550.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1062] Length = 619 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 228/608 (37%), Positives = 365/608 (60%), Gaps = 19/608 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + IDASH ETRVV+ +E+ ++E IK NIYL KV+RVEPSLQAAF+D Sbjct: 1 MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G +RHGFL F +I DYYQIP SD + +E A+ + ++ ++ N + Sbjct: 61 FGRDRHGFLSFNDIQSDYYQIPQSDLAKIKEEEEKAREELLKKSELEEQKNINEGNLNIN 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS--------PEDVPKKFKRQYCIQE 172 + V ET ++ ++ + + + + + ++Y IQE Sbjct: 121 DPVEVKLESEFETNDQITEGSDTPITDTTQVDEDKEQPSPVLHGRKPETRFRSKRYKIQE 180 Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 VIK Q++L+Q++K+ERG KGAA++T++S+AG+Y VLMPNT KG ISRKI NP +RK + Sbjct: 181 VIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPGERKKI 240 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + I + +P MG+I+RTAG+++TK +I D + L++ W+ ++E ALNS+AP L+++E Sbjct: 241 RTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKENALNSIAPSLIHQES 300 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 ++IKR +RD+Y + + I++ G +GY++A++FMKL+MPS+ + +++Y + P+FF+ IE Sbjct: 301 DIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPSHVKKIKKYREKVPLFFKENIE 360 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 +L+ ++ +E+ L S GY++IN TEALVSID+NSG S ++ +E TAL TNLEAAEEI+R Sbjct: 361 EKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVESTALDTNLEAAEEISR 420 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 Q+++RDL+GLI++DFIDM N R VE+KLKE + DRAR+Q+G IS FGLLEMSRQR+ Sbjct: 421 QIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIGRISTFGLLEMSRQRL 480 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 R S ++ + S A+ IL+ VE + A + + + ++ Sbjct: 481 RESAVKWKVT-----------LTDESFAMKILKLVEVKAVLTKAKFVELKICEKISDFMK 529 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 + +E + + I+++ L + I+ + + + + K Sbjct: 530 ENFIEDLKYFEEKNLIKIDIIADNSLIIPEYIIDLQNKTKKTIEIVQHIEKLKNLEEQKK 589 Query: 593 NIECVWQD 600 ++ Sbjct: 590 EVKSFESP 597 >gi|91762143|ref|ZP_01264108.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1002] gi|91717945|gb|EAS84595.1| ribonuclease E/G [Candidatus Pelagibacter ubique HTCC1002] Length = 619 Score = 417 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 357/574 (62%), Gaps = 19/574 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + IDASH ETRVV+ +E+ ++E IK NIYL KV+RVEPSLQAAF+D Sbjct: 1 MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G +RHGFL F +I DYYQIP SD + +E A+ + ++ ++ N Sbjct: 61 FGRDRHGFLSFNDIQSDYYQIPQSDLAKIKEEEEKAREELLKKSELEEQKNINEGNLDIN 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS--------PEDVPKKFKRQYCIQE 172 + V ET ++ ++ + + + + + ++Y IQE Sbjct: 121 DPVEVKLESEFETNDQVTEGSDTPITDTTQVDEDKEQPSPVLHGRKPETRFRSKRYKIQE 180 Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 VIK Q++L+Q++K+ERG KGAA++T++S+AG+Y VLMPNT KG ISRKI NP +RK + Sbjct: 181 VIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPGERKKI 240 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + I + +P MG+I+RTAG+++TK +I D + L++ W+ ++E ALNS+AP L+++E Sbjct: 241 RTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKENALNSIAPSLIHQES 300 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 ++IKR +RD+Y + + I++ G +GY++A++FMKL+MPS+ + +++Y + P+FF+ IE Sbjct: 301 DIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPSHVKKIKKYREKVPLFFKENIE 360 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 +L+ ++ +E+ L S GY++IN TEALVSID+NSG S ++ +E TAL TNLEAAEEI+R Sbjct: 361 EKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVESTALDTNLEAAEEISR 420 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 Q+++RDL+GLI++DFIDM N R VE+KLKE + DRAR+Q+G IS FGLLEMSRQR+ Sbjct: 421 QIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIGRISTFGLLEMSRQRL 480 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 R S ++ + S A+ IL+ VE + A + + + ++ Sbjct: 481 RESAVKWKVT-----------LTDESFAMKILKLVEVKAVLTKAKFVELKICEKISDFMK 529 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 + +E + + I+++ L + I+ Sbjct: 530 ENFIEDLKYFEEKNLIKIDIIADNSLIIPEYIID 563 >gi|87306478|ref|ZP_01088625.1| ribonuclease E [Blastopirellula marina DSM 3645] gi|87290657|gb|EAQ82544.1| ribonuclease E [Blastopirellula marina DSM 3645] Length = 588 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 195/576 (33%), Positives = 309/576 (53%), Gaps = 3/576 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLI+ S EE R+ ++ D +EE E + GNIY V +EPS+QAAFVD Sbjct: 1 MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD--DVTHGDVTIPNDH 118 +G ++GFL ++ P Y++ D L + AD D +++ + Sbjct: 61 FGVGKNGFLHISDVEPQYFRQGGYDPAEQLDDDFGGSYGGATAADFSDDDEEEISDSSGD 120 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 E+ + ++ + + + + + IQE+ K Sbjct: 121 DEEDKPDANDDGDGDSDDDAPPKPPQSRGRGQRRPQQRRQRPGMRPRVKPPIQEIFKRGD 180 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 +LVQ++KE G+KG ++TY+S+ GRY VLMP + +SRKI + R+ L+ Sbjct: 181 EVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVG-VSRKIEDDQVRRRLRSTLLE 239 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 L P G+G I+RTAG R K E+ RD YL+RLW + N+ P +YEE ++I R Sbjct: 240 LSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTTGPCDIYEESDMIIRT 299 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 IRD++ D+ I V E Y AK+F++L+MP + +++YE P+F + ++ ++ + Sbjct: 300 IRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKDPLFHKYHLDEEIARI 359 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 +Q EV L G ++I+QTEALV+IDVNSG + E+ A Q N+ AA+EIARQLRLRD Sbjct: 360 NQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAYQLNMMAAKEIARQLRLRD 419 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L G++V DFIDM +K+ R+VE+ L++S+K+DRAR ++ S FGL+EM+RQRIR S+ Sbjct: 420 LGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFGLIEMTRQRIRPSLKR 479 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 S K C CKG G ++S S+A+ ++R + A ++ + + +V YL N+KR Sbjct: 480 SVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVTIRVNDEVATYLNNKKRRE 539 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 + E + + + + +E Sbjct: 540 LARIEEDTNIVVQIYGSESFYPEHLEVECVDADGRR 575 >gi|157803476|ref|YP_001492025.1| ribonuclease E [Rickettsia canadensis str. McKiel] gi|157784739|gb|ABV73240.1| Ribonuclease E [Rickettsia canadensis str. McKiel] Length = 688 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 265/699 (37%), Positives = 402/699 (57%), Gaps = 12/699 (1%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLA+VTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPTETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAQVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S+R + + V DD + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFPEIALANITVEDDQEKPIAIYDSLVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE I + E ES + + ++ + S D +QY +QEVI+ QI Sbjct: 121 SEE---IDLKTIEDLVESKLQSELNLEGADDIEIIQSGIDSNIPQYKQYKVQEVIRKNQI 177 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 178 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNVEERKRLKDILNKI 237 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 VI+RTAG + +++K+D+ YL+RLW+ +R+ + AP ++EE ++I++ I Sbjct: 238 VSGNSYSVIVRTAGRGSSSLDLKKDYNYLVRLWNKIRKSTIKFPAPCFIHEEDSIIRKTI 297 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD+ ++ E+++ G++ Y +A FM+ L+PS ++ +++ PIF + +E QL L+ Sbjct: 298 RDMCDHNVKEVVIQGQEAYDDAAKFMQDLLPSELSKLKAHKNKTPIFTQFQVEEQLVKLY 357 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 Q VTLPS GY++IN TEAL+SIDVNSG+ST E IE+TAL+TNLEAA+ +A+Q++LRDL Sbjct: 358 QPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKAVAKQVKLRDL 417 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 +GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS LE+ Sbjct: 418 SGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFLET 477 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + +C++C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA I Sbjct: 478 NSSICSHCNGKGVIRANDANAMLILRTIENEIFEERIDVINVFTNIASVIYLLNNKRAEI 537 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E ++ + +N + IEK ++ N + V Q S D + + Sbjct: 538 KFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNSVKPVIQNHSADYTEDEPQK 597 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 ++ + + +N+ EE + ++ + + V + I+N Sbjct: 598 EQL---RKNKHKWKTVNNNVSVEEKNKKLETKQEVEQSTQNV-----EVVNEESQIIEND 649 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + + + N N D + S Sbjct: 650 VVTAEVPATKTLKRRYRNKKSNKKGAANTATDTAKNADS 688 >gi|148284838|ref|YP_001248928.1| ribonuclease E [Orientia tsutsugamushi str. Boryong] gi|146740277|emb|CAM80650.1| Ribonuclease E [Orientia tsutsugamushi str. Boryong] Length = 675 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 246/692 (35%), Positives = 388/692 (56%), Gaps = 20/692 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M ++L+DAS+ ETRV ++ +N R+ E+++E+ K IKGNIYLA +T++EPSLQAAF+ Sbjct: 1 MTKRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 DY + GFLPF EIHPDYY + + + SE + + + ++ D Sbjct: 61 DYSNGKSGFLPFSEIHPDYYNNVTNSL--PFDTVPLVEITSEEIKEQESCKNIQNEEDID 118 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE + + + N+++ + E +P +Q IQ+VI + QI Sbjct: 119 TEESDADDSKIITAFKNTTNIQNDEIEPVSKQNSQEIAEFLPP--HKQQEIQDVISSGQI 176 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 +LVQ KE RGNK A+ TTY+SL+G+Y +L PN S ISR+ITN DRK LK I L Sbjct: 177 VLVQATKESRGNKNASFTTYISLSGKYCILTPNLSNHSGISRRITNSEDRKQLKTIVGNL 236 Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 ++ VI+RTAG+ RT EIK+DF YL++LW+ + A + P +Y E ++I++ Sbjct: 237 ISKITKTSSVIIRTAGSRRTAYEIKKDFNYLLKLWNEIINTAKQAKPPAFIYVENDIIRK 296 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 I D+Y + E+I+ G+ Y A FM ++PS +++++ PIF + +E QL + Sbjct: 297 TILDIYNISVQEMIIQGKAAYDYAVKFMNAILPSEVHKIKEHKSTIPIFAQYNLEEQLAT 356 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L++ VTLPS GY++IN TEAL++IDVNSG+ T E IE+TA++TNLEAA+EI+ Q++LR Sbjct: 357 LYKPIVTLPSGGYIVINPTEALIAIDVNSGKDTSEQNIEETAVKTNLEAAKEISHQIKLR 416 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 +L+GLI +DFI M + KN++ +EK K+ L KD+A++QV +I++FG+L++SRQR+R S L Sbjct: 417 NLSGLITIDFICMTDSKNHKLIEKSFKKYLAKDKAKIQVDSINSFGVLQLSRQRLRPSFL 476 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 ES + +C++C G G +R++ S A+ ILR++E + ++ I V+ H V Y+LN KR Sbjct: 477 ESNSVICSHCSGKGIVRAEESNAMIILRTIENEIHTSKSNIINVYAHLHSVTYILNNKRT 536 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I + E ++ V + + F IEK V + + V Sbjct: 537 EIADIEKKYNVQLKFYNDFQSTSDSFSIEK-------------VTLSASTTKSALTEQPV 583 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 LL ++ + + I + +S I+ +RR R++ D V +S Sbjct: 584 VTSAKLLENIENPASQAISNTNISGSKILSIKSNKRRARKQTHNLDLSAEQSVQQISKPV 643 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 N D+ + T++ Sbjct: 644 NDKKDNASNNKNQPTRPIKRRTKPSILETTKS 675 >gi|15604126|ref|NP_220641.1| ribonuclease E (rne) [Rickettsia prowazekii str. Madrid E] gi|3860818|emb|CAA14718.1| RIBONUCLEASE E (rne) [Rickettsia prowazekii] gi|292571853|gb|ADE29768.1| Ribonuclease E [Rickettsia prowazekii Rp22] Length = 683 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 255/676 (37%), Positives = 393/676 (58%), Gaps = 33/676 (4%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MHKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P ++ + + + DD + + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPTAESTFPVNAFPEIALANITIEDDQEKPSIIYDSLID 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E S N ++ ++ ++ + Y +Q+VI+ Q+ Sbjct: 121 NEEID--LKTIEDLVESKFQSEFNLESADDIEIIQSCTTELNISQYKPYKVQDVIRKNQV 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPNTS ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNTSSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 VI+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VSIQKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFSAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++ Y +A FM+ L+PS ++++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELAKLKEHKNKTPIFTQFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ ++VC +C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA Sbjct: 479 ETNSEVCFHCNGKGVIRASDANAMLILRTIENEIFEERIDIINVFTNIVSVIYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK ++ + + E Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNSVNTVKPVIQNHSADYTEEEPK 598 Query: 598 WQ----------------------------DEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + E ++ ++ N +S E V Sbjct: 599 KEQLRKNKHKWKTANNNIVNAVKDQSLGVKELVAQTVSVVEEMKVVESNGISLEEVQVAP 658 Query: 630 KRRRRRRRRRPATDHH 645 K+ +R+ R + + Sbjct: 659 KKAKRKYRNKNSNKKR 674 >gi|157964327|ref|YP_001499151.1| ribonuclease E [Rickettsia massiliae MTU5] gi|157844103|gb|ABV84604.1| Ribonuclease E [Rickettsia massiliae MTU5] Length = 690 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 259/702 (36%), Positives = 391/702 (55%), Gaps = 16/702 (2%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P +R + + V DD + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPTLERNFPVNAFPEIALANITVEDDKEKPAAIYDSLVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E S N ++ ++ + +QY +QEVI+ QI Sbjct: 121 SEEID--LKTIEDLVESKFQSELNLEAADDIEIIQSGTPESNIPQYKQYKVQEVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LL Q+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 179 LLAQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 I+RTAG + +++K+D+ YL RLW+ +R+ L AP ++EE ++I++ Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTLKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++GY +A FM+ L+PS +++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYEDASKFMQDLLPSELAKLKEHKSKTPIFTKFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERTDVINVFTNIVSVIYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK ++ N + V Q S D E + Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNSVKPVIQNHSADYTEEEL 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + + + + K V + + Sbjct: 599 KKEQLRKNKHKWKTANNSNNIANEVKDKSLEAKES-----------VEQTVSVVEEVKVV 647 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + P + N + Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKRPSNTVEDTEKNAE 689 >gi|189183199|ref|YP_001936984.1| ribonuclease E [Orientia tsutsugamushi str. Ikeda] gi|189179970|dbj|BAG39750.1| ribonuclease E [Orientia tsutsugamushi str. Ikeda] Length = 675 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 247/692 (35%), Positives = 388/692 (56%), Gaps = 20/692 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M ++L+DAS+ ETRV ++ +N R+ E+++E+ +K IKGNIYLA +T++EPSLQAAF+ Sbjct: 1 MTKRILVDASYPNETRVALIDNNCRIAEIEYETANKHLIKGNIYLATITKIEPSLQAAFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 DY + GFLPF EIHPDYY + + + SE + + + ++ D Sbjct: 61 DYSNGKSGFLPFSEIHPDYYNNVTNSL--PFDTIPLVEITSEEIKEQESCKNIQNEEDID 118 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE + + + N+++ + E +P +Q IQ+VI + QI Sbjct: 119 TEESDADDSKIITAFKNTTNIQNDEIEPVSKQNSQEIAESLPP--HKQQEIQDVISSGQI 176 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 +LVQ KE RGNK A+ TTY+SL+G+Y +L PN S ISR+ITN DRK LK I L Sbjct: 177 VLVQATKESRGNKNASFTTYISLSGKYCILTPNLSNHSGISRRITNSEDRKQLKTIVGNL 236 Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 ++ VI+RTAG+ RT EIK+DF YL++LW+ + A + P +Y E ++I++ Sbjct: 237 ISKITKTSSVIIRTAGSRRTAYEIKKDFNYLLKLWNEIINTAKQAKPPAFIYVENDIIRK 296 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 I D+Y + E+I+ G+ Y A FM ++PS +++++ PIF + +E QL + Sbjct: 297 TILDIYNISVQEMIIQGKAAYDYAVKFMNAILPSEVHKIKEHKSTIPIFAQYNLEEQLAT 356 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L++ VTLPS GY++IN TEAL++IDVNSG+ T E IE+TA++TNLEAA+EI+ Q++LR Sbjct: 357 LYKPIVTLPSGGYIVINPTEALIAIDVNSGKDTSEQNIEETAVKTNLEAAKEISHQIKLR 416 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 +L+GLI +DFI M + KN++ +EK K+ L KD+A++QV +I++FG+L++SRQR+R S L Sbjct: 417 NLSGLITIDFICMTDSKNHKLIEKSFKKYLAKDKAKIQVDSINSFGVLQLSRQRLRPSFL 476 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 ES + +C++C G G +R++ S A+ ILR++E + ++ I V+ H V Y+LN KRA Sbjct: 477 ESNSVICSHCSGKGIVRAEESNAMIILRTIENEIHTSKSNIINVYAHLHSVTYILNNKRA 536 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I + E ++ V + + F IEK V + + V Sbjct: 537 EIADIEKKYNVQLKFYNDFQSTSDSFSIEK-------------VTLSANTTKSALTEQPV 583 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 LL ++ + I + +S I+ +RR R+ D V +S Sbjct: 584 VTSAKLLENIENPGSQAISNTNISVSKILSIKSNKRRPRKPTLKLDLPAEQSVKQISKPV 643 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 N D+ + T++ Sbjct: 644 NDKKDNAPNNKNQPTRPIKRRTKPSILETTKS 675 >gi|229586506|ref|YP_002845007.1| Ribonuclease E [Rickettsia africae ESF-5] gi|228021556|gb|ACP53264.1| Ribonuclease E [Rickettsia africae ESF-5] Length = 690 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 260/703 (36%), Positives = 394/703 (56%), Gaps = 18/703 (2%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S+R + + V DD V + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAVIYDSLVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E + S N ++ ++ + +QY +QEVI+ QI Sbjct: 121 SEEID--LKTIEDLVESTFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 I+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++GY +A FM+ L+PS +++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYADASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL++IDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAKELAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ +C++C G G IR+ + A+ ILR++E + + I V T+ VLYLLN KRA Sbjct: 479 ETNAAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVLYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK + N + V Q + D E + Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNADYTAEDL 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + + + + A + + V Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSL------------EAEESVEQTVSVVEEVQV 646 Query: 658 NVIDDSFDM-YMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + + P + N + Sbjct: 647 VESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTETNAE 689 >gi|91205031|ref|YP_537386.1| ribonuclease E [Rickettsia bellii RML369-C] gi|91068575|gb|ABE04297.1| Ribonuclease E [Rickettsia bellii RML369-C] Length = 693 Score = 400 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 259/690 (37%), Positives = 395/690 (57%), Gaps = 5/690 (0%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ K+Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S++ + + + D+ T + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASEKNFPINAFPEIVPPNIILDDEDEVRAATSYDPLI 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 E + E + N + ++E ++ E++P+ +QY +Q+VI+ QI Sbjct: 121 DGEEIDLKAIEDLVESKFQSELNLEAADDIEIIQSDKEENIPQ--YKQYKVQDVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN + ISRKI+N +RK LK I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYVSLAGKYCVLMPNKAAQNGISRKISNGDERKRLKNILNKV 238 Query: 240 EVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 VI+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VNGDKSPYSVIIRTAGRGCSTLDLKKDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+I+ G++ Y +A FM+ L+PS +++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVIIYGQEAYEDAAKFMQDLLPSEMTKLKEHKSKTPIFTKFQVEEQLIK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSGRST E IE+TAL+TNLEAA+EIARQ++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM+E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMDETKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G +R+ S A+ ILR++E + + I V + V+YLLN KR Sbjct: 479 ETNSSICSHCNGKGVVRADESNAMLILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQ 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK ++ N + Q S D E Sbjct: 539 EIKFIEEKYNIRLNFYSDPNATSDSYSIEKVKLLKKNNNNLNAGKPVIQNHSADYTEEEP 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + ++ I++ + + V Sbjct: 599 KKEQLRKNKYKWKTGNNNNVVSEEKKKVPEIKEVKDQVVSVVKEEVEITDDGVVVEEKPL 658 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + E+ + Sbjct: 659 PKKTKRRYRNKKSNKNRPVANKESSVAEDS 688 >gi|157825471|ref|YP_001493191.1| ribonuclease E [Rickettsia akari str. Hartford] gi|157799429|gb|ABV74683.1| ribonuclease E [Rickettsia akari str. Hartford] Length = 690 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 263/698 (37%), Positives = 393/698 (56%), Gaps = 16/698 (2%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG + GFLPF EIHP+YY +P S+R + + V DD V + Sbjct: 61 EYGMEKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAVIYDSFVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E S N ++ ++ + +QY +QEVI+ QI Sbjct: 121 SEEID--LKTIEDLVESKFQSELNLEAADDIEIIQSGTTESNIPQYKQYKVQEVIRKTQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGLQNGISRKISNGEERKRLKDILNKI 238 Query: 240 E--VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 VI+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VSGDKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++ Y +A FM+ L+PS ++++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASRFMQDLLPSELAKLKEHKNKIPIFTKFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G IR+ + A+ ILR++E + + I V T+ VLYLLN KRA Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVLYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK ++ N + V Q S D E Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKQNNNNVNPVKPVIQNHSADYTEEEP 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 ++ K ++ + + + + A V + + Sbjct: 599 KTEQLRKNKHKWKTANNSNNVANEVKDKSLE-----------AAESVEHTVSVVEELKVV 647 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 + + P I + N Sbjct: 648 ESNAGLEEAQVAPKKIKRRYRNKKSNKTCPPNIAEDTE 685 >gi|157827600|ref|YP_001496664.1| ribonuclease E [Rickettsia bellii OSU 85-389] gi|157802904|gb|ABV79627.1| Ribonuclease E [Rickettsia bellii OSU 85-389] Length = 693 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 258/690 (37%), Positives = 394/690 (57%), Gaps = 5/690 (0%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ K+Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S++ + + + D+ T + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASEKNFPINAFPEIVPPNIILDDEDEVRAATSYDPLI 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 E + E + N + ++E ++ E++P+ +QY +Q+VI+ QI Sbjct: 121 DGEEIDLKAIEDLVESKFQSELNLEAADDIEIIQSDKEENIPQ--YKQYKVQDVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN + ISRKI+N +RK LK I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYVSLAGKYCVLMPNKAAQNGISRKISNGDERKRLKNILNKV 238 Query: 240 EVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 VI+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VNGDKSPYSVIIRTAGRGCSTLDLKKDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+I+ G++ Y +A FM+ L+PS +++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVIIYGQEAYEDAAKFMQDLLPSEMTKLKEHKSKTPIFTKFQVEEQLIK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSGRST E IE+TAL+TNLEAA+EIARQ++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM+E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+R S L Sbjct: 419 DLSGLIVVDFIDMDETKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRFSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G +R+ S A+ ILR++E + + I V + V+YLLN KR Sbjct: 479 ETNSSICSHCNGKGVVRADESNAMLILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQ 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK ++ N + Q S D E Sbjct: 539 EIKFIEEKYNIRLNFYSDPNATSDSYSIEKVKLLKKNNNNLNAGKPVIQNHSADYTEEEP 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + ++ I++ + + V Sbjct: 599 KKEQLRKNKHKWKTGNNNNVVSEEKKKVPEIKEVKDQVVSVVKEEVEITDDGVVVEEKPL 658 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + E+ + Sbjct: 659 PKKTKRRYRNKKSNKNRPVANKESSVAEDS 688 >gi|269958642|ref|YP_003328429.1| ribonuclease E [Anaplasma centrale str. Israel] gi|269848471|gb|ACZ49115.1| ribonuclease E [Anaplasma centrale str. Israel] Length = 620 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 226/615 (36%), Positives = 345/615 (56%), Gaps = 22/615 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L+DA++V+E RV VL +V E D E + +KQ++GNIY A V RVEPSLQA F++YG Sbjct: 8 KRILVDAAYVDEIRVAVLDGGKVVEFDQELKDRKQLRGNIYYAVVKRVEPSLQAVFIEYG 67 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++HGFLPF EI ++YQ+P +++ALL+ + DD H ++ + + Sbjct: 68 ISKHGFLPFSEISVEHYQLPAEEKEALLQ---------DVYGDDQEHEELAGDDGVATPL 118 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 + + + + + Y IQ+VIK Q L+V Sbjct: 119 PDECGVDACKPSLDDRSGKRDPASK---------AGRSRASLHKLYKIQDVIKVDQKLMV 169 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNT-SKGETISRKITNPVDRKNLKEIARGLEV 241 QI+KEERG+K A +T+++LAGRY + MPN SK ISR+I + DR+NLKE+ +++ Sbjct: 170 QIIKEERGSKCATFSTHVALAGRYCIFMPNAGSKSSGISRRIEDCDDRRNLKEVLNSIKL 229 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 P G+I+RTAG+++++ EI++D YL W +R+ N P L+Y E N++KRA+RD Sbjct: 230 PKESGIIIRTAGSNKSQKEIEQDLSYLQSTWQEIRDNCENMEPPALLYVEANIVKRALRD 289 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 + E++V+G + + K++ K M VR Y+ PIF ++ Q+ L+ Sbjct: 290 FCDETTHEVVVAGSRAFSLVKEYAK-SMFRNKLRVRMYKGSVPIFTHYRVDSQILELYSD 348 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 ++ LPS GY++I TEALVSIDVNSG+ T E IE+TA +TN+EA +EIARQ+ LR L+G Sbjct: 349 KIFLPSGGYLVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLSG 408 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 LIV+DFIDM + R+VE +++E+ K D+A+VQ G IS FGL+E+SRQR++ S+L++ T Sbjct: 409 LIVIDFIDMLRYRYCRAVESEVREAFKNDKAKVQFGYISAFGLMEISRQRVKQSILDTNT 468 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541 C +C+G G +RS SVA ILRSV + + I V +V+ YL N KR I Sbjct: 469 IQCAHCRGVGRVRSLESVAADILRSVRYFAHKNREKIISVSADHEVLTYLFNNKRKHIWA 528 Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD- 600 E F V I + F I ++ ++ + E Sbjct: 529 IEGEFKVIIRFGVSGNPGAAGFNIHAEKGYSTALSEELMGPPEASPEVAENKAESTEITG 588 Query: 601 -EALLPIPKSESLED 614 + +E + Sbjct: 589 VQPNTQAVPAEVEKP 603 >gi|157828220|ref|YP_001494462.1| ribonuclease E [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932923|ref|YP_001649712.1| ribonuclease E [Rickettsia rickettsii str. Iowa] gi|157800701|gb|ABV75954.1| ribonuclease E [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908010|gb|ABY72306.1| ribonuclease E [Rickettsia rickettsii str. Iowa] Length = 690 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 256/702 (36%), Positives = 390/702 (55%), Gaps = 16/702 (2%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S+R + + V DD Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAAIYDALVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E S N ++ ++ + +QY +QEVI+ QI Sbjct: 121 SEEID--LKTIEDLVESKFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERG+K AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGSKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 I+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE +I++ Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDGIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++GY +A FM+ L+PS +++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYEDASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL++IDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAQEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK + N + V Q + D E + Sbjct: 539 EIKFIEEKYNIKLNFYSDPHATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNSDYTEEEL 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + + + + + V + + Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSLEAEES-----------VEQTVSVVEEVKVV 647 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + P + N + Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTEKNAE 689 >gi|239947791|ref|ZP_04699544.1| ribonuclease, Rne/Rng family [Rickettsia endosymbiont of Ixodes scapularis] gi|239922067|gb|EER22091.1| ribonuclease, Rne/Rng family [Rickettsia endosymbiont of Ixodes scapularis] Length = 690 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 260/699 (37%), Positives = 393/699 (56%), Gaps = 16/699 (2%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S+R + + + V DD + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFSEIALSNITVEDDKEKPTAIYDSLVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E S N ++ ++ + +QY +QEVI+ QI Sbjct: 121 SEEID--LKTIEDLVESKFHSELNLEAADDIEIIQSDTSESNILQYKQYKVQEVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 I+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VSGDKNAYSIIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++ Y +A FM+ L+PS ++++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELSKLKEHKNKTPIFTKFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK ++ N + V Q S D E Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNPVKPVIQNHSADYTEEEP 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + + + + K V + + Sbjct: 599 KKEQLRKNKHKWKTANNSNNIANEVKDKSLEAKEP-----------VEQTVSVVEEVKVV 647 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + P L + N Sbjct: 648 ESNAGLEEAQAAPKKTKRRYLNKKSNKKRPVNTAEDTEK 686 >gi|15892265|ref|NP_359979.1| ribonuclease E [Rickettsia conorii str. Malish 7] gi|15619404|gb|AAL02880.1| ribonuclease E [Rickettsia conorii str. Malish 7] Length = 690 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 256/702 (36%), Positives = 392/702 (55%), Gaps = 16/702 (2%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S+R + + V D+ + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDNKEKPAAIYDSLVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E + S N ++ ++ + +QY +QEVI+ QI Sbjct: 121 SEEID--LKTIEDLVESTFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 I+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++GY +A FM+ L+PS +++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYADASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL++IDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYIVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G IR+ + A+ ILR++E + + I V T+ VLYLLN KR Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVLYLLNNKRT 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK + N + V Q + D E + Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNADYTEEEL 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + + + + + V + + Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSLEAEES-----------VEQTVSVVEEVQVV 647 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + P + N + Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTEKNAE 689 >gi|238650481|ref|YP_002916333.1| ribonuclease E [Rickettsia peacockii str. Rustic] gi|238624579|gb|ACR47285.1| ribonuclease E [Rickettsia peacockii str. Rustic] Length = 690 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 257/702 (36%), Positives = 392/702 (55%), Gaps = 16/702 (2%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S+R + + V DD + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAAIYDSLVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ E S N ++ ++ + +QY +QEVI+ QI Sbjct: 121 SEEID--LKTIEDLVESRFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQI 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 I+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++GY +A FM+ L+PS +++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEGYEDASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL++IDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPVVTLPSGGYMVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA Sbjct: 479 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK + N + V Q + D E + Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNADYTEEEL 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + + + + + V + + Sbjct: 599 KKEQLRKNKHKWKTANNSNNVANEVKDKSLEAEES-----------VEQTVSVVEEVKVV 647 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + P + N + Sbjct: 648 ESNAGLEEAQAAPKKTKRRYRNKTSNKKCPSNTVEDTEKNAE 689 >gi|67459417|ref|YP_247041.1| ribonuclease E [Rickettsia felis URRWXCal2] gi|67004950|gb|AAY61876.1| Ribonuclease E [Rickettsia felis URRWXCal2] Length = 678 Score = 398 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 260/680 (38%), Positives = 393/680 (57%), Gaps = 6/680 (0%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY +P S+R + + V DD + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFPEIALSNITVEDDKEKPAAIYDSLVD 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE I + E ES + ++ + + S + +QY +Q+VI+ QI Sbjct: 121 SEE---IDLKNIEDLVESKFQSELNLEAADDIEIIQSGVEQNVLQYKQYKVQDVIRKNQI 177 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN ISRKI+N +RK LK+I + Sbjct: 178 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKI 237 Query: 240 EVPAGMGV--ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 I+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 238 VSGDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRK 297 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++ Y +A FM+ L+PS ++++++ PIF + +E QL Sbjct: 298 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELSKLKEHKNKTPIFTKFQVEEQLVK 357 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 358 LYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 417 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 418 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 477 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ + +C++C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA Sbjct: 478 ETNSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVIYLLNNKRA 537 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK ++ N + V Q S D E Sbjct: 538 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNPVKPVIQNHSADYTEEEP 597 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + + + + K + + + Q Sbjct: 598 KKEQLRKNKHKWKTANNSNNIANEVKDKSLEVKEPVEQTVSVVEEVKVVVSSNAGLEEAQ 657 Query: 658 NVIDDSFDMYMEPSDITNHN 677 V + Y + Sbjct: 658 AVPKKTKRRYCNKKSNKETS 677 >gi|51473454|ref|YP_067211.1| ribonuclease E [Rickettsia typhi str. Wilmington] gi|51459766|gb|AAU03729.1| ribonuclease E [Rickettsia typhi str. Wilmington] Length = 683 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 260/699 (37%), Positives = 401/699 (57%), Gaps = 23/699 (3%) Query: 1 MANKMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++IDA+ ETRVV+L + N +E+++F++ ++Q KGNIYLAKVTR+EPSLQA F+ Sbjct: 1 MHKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +YG ++ GFLPF EIHP+YY + ++ + + + DD V + Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLSITESTFPVNAFPEIALANITIEDDQEKPPVIYDSLID 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 EE+ ++ + S N ++ ++ ++ + Y +Q+VI+ Q+ Sbjct: 121 SEEID--LKTIEDLVDSKFQSEFNLESADDIEIIQSCTTELNIPQYKPYKVQDVIRKNQV 178 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LLVQ+ KEERGNK AA TTY+SLAG+Y VLMPN S ISRKI+N +RK LK+I + Sbjct: 179 LLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKSSQNGISRKISNGEERKRLKDILNKI 238 Query: 240 --EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 VI+RTAG + +++K+D+ YL RLW+ +R+ + AP ++EE ++I++ Sbjct: 239 VSIQKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFSAPCFIHEEDSIIRK 298 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD+ ++ E+++ G++ Y +A FM+ L+PS ++++++ PIF + +E QL Sbjct: 299 TIRDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELTKLKEHKNKTPIFTQFQVEEQLVK 358 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 L+Q VTLPS GY++IN TEAL+SIDVNSG+ST E IE+TAL+TNLEAA+E+A+Q++LR Sbjct: 359 LYQPIVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLR 418 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL+GLIVVDFIDM E KN + +E+ KE L +DRAR+Q G IS FGLLE SRQR+RSS L Sbjct: 419 DLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFL 478 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 E+ ++VC +C G G IR+ + A+ ILR++E + + I V T+ V+YLLN KRA Sbjct: 479 ETNSEVCFHCNGKGVIRASDANAMLILRTIENEIFEERIDIINVFTNIVSVIYLLNNKRA 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E ++ + +N + IEK + N+ + V Q S D E Sbjct: 539 EIKFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKQNNSVNTVKPVIQNHSADYTEEEP 598 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K ++ + N V ++S +V ++ I+ Sbjct: 599 KKEQLRKNKHKWKTANNNIVNAVKDQSV------------------EQTVNIVEEMKVIE 640 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 N + + P + +N + V Sbjct: 641 NNGISLEETQVTPKNAKRKYRNKNLNKKRLADSIVDGEN 679 >gi|153870707|ref|ZP_02000051.1| ribonuclease, Rne/Rng family [Beggiatoa sp. PS] gi|152072828|gb|EDN69950.1| ribonuclease, Rne/Rng family [Beggiatoa sp. PS] Length = 598 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 237/630 (37%), Positives = 352/630 (55%), Gaps = 58/630 (9%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+ EE RV ++ R+ + D E+ +KQIK NIY K+TR+EPSL+AAFVD+G Sbjct: 2 KRILINATQPEELRVALVDGQRLYDFDIETAGRKQIKSNIYKGKITRLEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 +DR L ++A++ +A V D Sbjct: 62 ---------------------ADRHGFLPLKDVARSYFQAQQQAVQQSDTLE-------- 92 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 ++ + E ++ I++V+K Q +++ Sbjct: 93 ---------------------------KEDESPVEESEEPGPPQRRGIKDVLKEGQDIII 125 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 QI KEERGNKGAA+TT++SLAGRY VLMPN + +SR+I + +E L++P Sbjct: 126 QIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEDRSEA-RETLSTLDIP 184 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 GMG+ILRTAG ++T E++ D EYL++LW + A AP L+Y+E N+I RAIRD Sbjct: 185 TGMGLILRTAGVNKTAEELQWDLEYLLQLWKAIESSAQQQPAPFLIYQESNIIIRAIRDY 244 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 +DISEI++ ++ Y EA FM+ +MP + V+ Y+ P+F R IE Q+++ Q E Sbjct: 245 LREDISEILIDNQEIYDEAYAFMQQVMPQHINKVKLYQHKVPLFTRYQIESQIETAFQRE 304 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V LP G ++++ TEAL+SID+NS R+T+ IE+TAL TNLEA +EIARQLRLRDL GL Sbjct: 305 VKLPLGGAIVLDHTEALLSIDINSARATKGVDIEETALTTNLEAVDEIARQLRLRDLGGL 364 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 +V+DFIDM KN R VE ++KE+LK DRARVQVG IS FGLLEMSRQR+R S+ ES+ Sbjct: 365 VVIDFIDMLSHKNQREVESRIKEALKMDRARVQVGRISRFGLLEMSRQRLRPSLGESSQI 424 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 VC C G G +RS S++LS+LR +EE ++ II V YLLN+KR+ ++E Sbjct: 425 VCPRCSGQGSVRSVESLSLSLLRLMEEEAMKEKTGKIITQVPVQVAAYLLNEKRSAVLEI 484 Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R ++I ++ + + +++ + K + + +E Sbjct: 485 EERQQINIVLIPNPFMETPFYEMQRVREDDKRESASLKASYKFIKNTQEPVVENY-NTPP 543 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 L IP +++ + N ST + ++ Sbjct: 544 QLEIPAEPAVKGVVHNTPPVLSTKPVERQP 573 >gi|57239278|ref|YP_180414.1| ribonuclease E [Ehrlichia ruminantium str. Welgevonden] gi|58579242|ref|YP_197454.1| ribonuclease E [Ehrlichia ruminantium str. Welgevonden] gi|57161357|emb|CAH58280.1| putative ribonuclease [Ehrlichia ruminantium str. Welgevonden] gi|58417868|emb|CAI27072.1| Ribonuclease E [Ehrlichia ruminantium str. Welgevonden] Length = 610 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 234/607 (38%), Positives = 344/607 (56%), Gaps = 19/607 (3%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++LID + +E RV VLRD +V E D ES+ KK +KGNIY A V R+EPSLQA F++Y Sbjct: 6 NKRILIDGVYQDEIRVAVLRDGQVVEFDQESKSKKCLKGNIYCAVVKRIEPSLQAVFIEY 65 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G N+HGFLPF EI +YY IP +++AL + D T+ Sbjct: 66 GINKHGFLPFSEISLEYYNIPEEEKEALYQTLYKDSDKDTDTKSDDEKSTDTMILSEDES 125 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 E + ++ N + F + Y +Q+VIK Q ++ Sbjct: 126 EGITESEEKLALLKKENSRNNYNKSK--------------LPFHKLYKVQDVIKLDQKIM 171 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240 VQI+KEERGNKGA +T+++L GRY + MPN+ K ISR+I +P +RK LK ++ Sbjct: 172 VQIIKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIDDPEERKILKNFLNSIK 231 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P G+I+RTAG+++ + EI++D YL +W +++ ++ P L+Y E ++IKR +R Sbjct: 232 LPKKSGLIIRTAGSNKARKEIEQDLSYLQSIWRSIQNSYISVTVPSLLYIEWDIIKRTLR 291 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + +I+VSG Y AK+ +K + + R+ + PIF IE Q+ L+ Sbjct: 292 DYCDESTQDIVVSGSHAYELAKECIKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYS 350 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY++I TEALVSIDVNSG+ T E IE+TA +TN+EA +EIARQ+ LR L+ Sbjct: 351 NIVNLPSGGYMVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 410 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM + + RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ Sbjct: 411 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAQVQFGYISTFGLMEISRQRVKQSILEAN 470 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T C++CKG G +RS S + ILR++ + I V + +V Y N KR I Sbjct: 471 TVPCSHCKGVGKVRSFESSSGDILRNIRYCANKNRNKLINVSVVAQMVEYFFNNKRQHIT 530 Query: 541 EYEARFGVSINVVIGIELAD-KLFYI--EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 E EA F VSI + + L F I E + V + + D + + E V Sbjct: 531 EIEAEFSVSIKLTVSQNLNSVSDFSISVENDNIVNQSEDLVNVFTVDYKTSKSEDLKEEV 590 Query: 598 WQDEALL 604 + + + Sbjct: 591 QKSTSSV 597 >gi|254995126|ref|ZP_05277316.1| ribonuclease E (rne) [Anaplasma marginale str. Mississippi] Length = 619 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 230/608 (37%), Positives = 346/608 (56%), Gaps = 21/608 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L+DA++V+E RV VL D +V E D E + +KQ++GN+Y A V R+EPSLQA F++YG Sbjct: 8 KRILVDAAYVDEIRVAVLDDGKVVEFDQELKDRKQLRGNVYYAVVKRIEPSLQAVFIEYG 67 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++HGFLPF EI ++YQ+P +++ALL+ + E +A+ +P+D ++ Sbjct: 68 ISKHGFLPFSEISVEHYQLPTEEKEALLQSMYGDGQEHEGLAEG-DGAAAPLPDDGPVDT 126 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 P + + S + Y IQ+VIK Q L+V Sbjct: 127 CKPQLDDRSGKRD------------------ASSKARSKSSLHKLYKIQDVIKVDQKLMV 168 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLEV 241 QI+KEERGNK A +TY++L GRY + MPN K ISR+I + DRKNLKE+ +++ Sbjct: 169 QIIKEERGNKCATFSTYIALVGRYCIFMPNAGNKNSGISRRIEDCDDRKNLKEVLNSIKL 228 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 P GVI+RTAG++R++ EI++D YL W +R+ P L+Y E N+IKRA+RD Sbjct: 229 PKESGVIIRTAGSNRSQKEIEQDLSYLQSTWQEIRDNCEKVEPPALLYVEANIIKRALRD 288 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 + I +++VSG + + K++ K M VR Y+ PIF ++ Q+ L+ Sbjct: 289 FCDETIHDVVVSGSRAFSLVKEYAK-SMFRNKLRVRMYKGSVPIFTHYRVDAQILELYSD 347 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 ++ LPS GY++I TEALVSIDVNSG+ T E IE+TA +TN+EA +EIARQ+ LR L+G Sbjct: 348 KIFLPSGGYLVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLSG 407 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 LIV+DFIDM + R+VE +++E+ K D+A+VQ G IS FGL+E+SRQR++ S+L++ T Sbjct: 408 LIVIDFIDMLRYRYCRAVEAEVREAFKNDKAKVQFGYISAFGLMEISRQRVKQSILDTNT 467 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541 C +C+G G +RS SVA ILR V + + I V V+ YL N KR I Sbjct: 468 VQCAHCRGVGRVRSFESVAADILRDVRYFAHKNREKIISVLADPGVLTYLFNHKRKHIWA 527 Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 E F V I + + F I ++ ++Q + + Sbjct: 528 IEGEFKVLIRLGVSENPGAAGFSIHAEKGYSTALSEELMGPPEAQPELAESKADSAEIAN 587 Query: 602 ALLPIPKS 609 + ++ Sbjct: 588 VQETVQEA 595 >gi|58617295|ref|YP_196494.1| ribonuclease E [Ehrlichia ruminantium str. Gardel] gi|58416907|emb|CAI28020.1| Ribonuclease E [Ehrlichia ruminantium str. Gardel] Length = 610 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 232/607 (38%), Positives = 342/607 (56%), Gaps = 19/607 (3%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++LID + +E RV VLRD +V E D ES+ KK +KGNIY A V R+EPSLQA F++Y Sbjct: 6 NKRILIDGVYQDEIRVAVLRDGQVVEFDQESKSKKCLKGNIYCAVVKRIEPSLQAVFIEY 65 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G N+HGFLPF EI +YY IP +++ L + D T+ Sbjct: 66 GINKHGFLPFSEISLEYYNIPEEEKETLYQTLYKDSDKDTDTKSDDEKSTDTMILSEDES 125 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 E + ++ N + F + Y +Q+VI+ Q ++ Sbjct: 126 EGIAESEEKLALLKKENSRNNYNKSK--------------LPFHKLYKVQDVIRLDQKIM 171 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240 VQI+KEERGNKGA +T+++L GRY + MPN+ K ISR+I +P +RK LK ++ Sbjct: 172 VQIIKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIDDPEERKILKNFLNSIK 231 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P G+I+RTAG+++ + EI++D YL +W +++ ++ P L+Y E ++IKR +R Sbjct: 232 LPKKSGLIIRTAGSNKARKEIEQDLSYLQSIWRSIQNSYISVTVPSLLYIEWDIIKRTLR 291 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + +I+VSG Y AK+ +K + + R+ + PIF IE Q+ L+ Sbjct: 292 DYCDESTQDIVVSGSHAYELAKECIKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYS 350 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY++I TEALVSIDVNSG+ T E IE+TA +TN+EA +EIARQ+ LR L+ Sbjct: 351 NIVNLPSGGYMVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 410 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM + + RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ Sbjct: 411 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAQVQFGYISTFGLMEISRQRVKQSILEAN 470 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T C++CKG G +RS S + ILR++ + I V + +V Y N KR I Sbjct: 471 TVPCSHCKGVGKVRSFESSSGDILRNIRYCANKNRNKLINVSVVAQMVEYFFNNKRQHIT 530 Query: 541 EYEARFGVSINVVIGIELAD-KLFYI--EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 E EA F VSI + + L F I E + V + + D + + E V Sbjct: 531 EIEAEFSVSIKLTVSQNLNSISDFSISVENDNIVNQSEDLVNVFTVDYKTSKSEDLKEEV 590 Query: 598 WQDEALL 604 + + Sbjct: 591 QNSTSSV 597 >gi|56416944|ref|YP_154018.1| ribonuclease E [Anaplasma marginale str. St. Maries] gi|222475310|ref|YP_002563727.1| ribonuclease E (rne) [Anaplasma marginale str. Florida] gi|255003293|ref|ZP_05278257.1| ribonuclease E (rne) [Anaplasma marginale str. Puerto Rico] gi|255004418|ref|ZP_05279219.1| ribonuclease E (rne) [Anaplasma marginale str. Virginia] gi|56388176|gb|AAV86763.1| ribonuclease E [Anaplasma marginale str. St. Maries] gi|222419448|gb|ACM49471.1| ribonuclease E (rne) [Anaplasma marginale str. Florida] Length = 619 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 229/608 (37%), Positives = 346/608 (56%), Gaps = 21/608 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L+DA++V+E RV VL D +V E D E + +KQ++GN+Y A V R+EPSLQA F++YG Sbjct: 8 KRILVDAAYVDEIRVAVLDDGKVVEFDQELKDRKQLRGNVYYAVVKRIEPSLQAVFIEYG 67 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++HGFLPF EI ++YQ+P +++ALL+ + E +A+ +P+D ++ Sbjct: 68 ISKHGFLPFSEISVEHYQLPAEEKEALLQSMYGDGQEHEGLAEA-DGAAAPLPDDGPVDA 126 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 P + + S + Y IQ+VIK Q L+V Sbjct: 127 CKPQLDDRSGKRD------------------ASSKARSKSSLHKLYKIQDVIKVDQKLMV 168 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLEV 241 QI+KEERGNK A +TY++L GRY + MPN K ISR+I + DRKNLKE+ +++ Sbjct: 169 QIIKEERGNKCATFSTYIALVGRYCIFMPNAGNKNSGISRRIEDCDDRKNLKEVLNSIKL 228 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 P GVI+RTAG++R++ EI++D YL W +R+ P L+Y E N+IKRA+RD Sbjct: 229 PKESGVIIRTAGSNRSQKEIEQDLSYLQSTWQEIRDNCEKVEPPALLYVEANIIKRALRD 288 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 + I +++VSG + + K++ K M VR Y+ PIF ++ Q+ L+ Sbjct: 289 FCDETIHDVVVSGSRAFSLVKEYAK-SMFRNKLRVRMYKGSVPIFTHYRVDAQILELYSD 347 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 ++ LPS GY++I TEALVSIDVNSG+ T E IE+TA +TN+EA +EIARQ+ LR L+G Sbjct: 348 KIFLPSGGYLVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLSG 407 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 LIV+DFIDM + R+VE +++E+ K D+A+VQ G IS FGL+E+SRQR++ S+L++ T Sbjct: 408 LIVIDFIDMLRYRYCRAVEAEVREAFKNDKAKVQFGYISAFGLMEISRQRVKQSILDTNT 467 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541 C +C+G G +RS SVA +LR V + + I V V+ YL N KR I Sbjct: 468 VQCAHCRGVGRVRSFESVAADMLRDVRCFAHKNREKIISVLADPGVLTYLFNHKRKHIWA 527 Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 E F V I + + F I ++ ++Q + + Sbjct: 528 IEGEFKVLIRLGVSENPGAAGFSIHAEKGYSTALSEELMGPPEAQPELAESKADNAEIAN 587 Query: 602 ALLPIPKS 609 + ++ Sbjct: 588 VQETVQEA 595 >gi|88606792|ref|YP_504952.1| ribonuclease [Anaplasma phagocytophilum HZ] gi|88597855|gb|ABD43325.1| ribonuclease, Rne/Rng family [Anaplasma phagocytophilum HZ] Length = 636 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 235/621 (37%), Positives = 360/621 (57%), Gaps = 20/621 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKG-NIYLAKVTRVEPSLQAAFVDY 61 ++LIDA +++E RV VL + +V E D E + +KQ++G NIY A V R+EPSLQA F++Y Sbjct: 11 KRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEY 70 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G +HGFLPF EI ++YQIP ++ LLK D+ + + + + + Sbjct: 71 GVGKHGFLPFSEIAVEHYQIPQEEKDVLLK---------NLYGDNSEQDEHSEEEECTGD 121 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + S++ ++ ++ + K G + VP K + +Q VIK Q L+ Sbjct: 122 AEPSEESSSEDADKVQSLAEEQRAGKRCSEGKNGKGKLVPHKMYK---VQNVIKVDQKLM 178 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240 VQI KEERG+K A +TY+ LAGRY + MPN+ K ISR+I + V RKNLKE ++ Sbjct: 179 VQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNSGISRRIDDCVHRKNLKEFLDEMK 238 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P GVI+RTAG++RT E++RD YL WD V+ + P L+Y E ++IKR +R Sbjct: 239 LPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKSSFESVTHPSLLYVEADVIKRTLR 298 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D +++ +++V+G K + K++ K + + R+ + PIF + Q+ L+ Sbjct: 299 DFCDENVHDVVVAGSKAFGLVKEYAKSMFGNRLRVRTY-KGSIPIFTHYRVNAQILELYT 357 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ LPS GY++I TEALVSIDVNSGR T E IE+TA +TN+EA +EIARQ+ LR L+ Sbjct: 358 DKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIEETAYRTNMEAVKEIARQVNLRGLS 417 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM + + R+VE +++E+ K D+A++Q G IS FGL+E+SRQR++ S+L+S+ Sbjct: 418 GLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQFGYISAFGLMEISRQRVKQSILDSS 477 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T C +CKG G RS S++ SILR V + ++V S VV +L N KR I Sbjct: 478 TVQCHHCKGVGRTRSLESISASILRDVSYVANKNPEKILVVSVVSSVVSHLFNSKRRQIA 537 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 E E+ F V I + + L + I +L++ A S K ++ Sbjct: 538 EIESEFKVLIRLDVDDNLGISDYNIRAEKGYSSLLHEELSSAVVVTADSVKK-----KEE 592 Query: 601 EALLPIPKSESLEDIQDNIVS 621 A LP ++ + + +N+ Sbjct: 593 AAELPAEGTDHQKSLAENVAE 613 >gi|32475458|ref|NP_868452.1| ribonuclease E [Rhodopirellula baltica SH 1] gi|32446000|emb|CAD75816.1| ribonuclease E [Rhodopirellula baltica SH 1] gi|327538420|gb|EGF25092.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica WH47] Length = 534 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 200/576 (34%), Positives = 322/576 (55%), Gaps = 46/576 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLI+ EE+R+ V+ +NR+EEL E + + GNIY K+ +EPS+QAAFVD Sbjct: 1 MKREMLINVLQPEESRIAVVENNRLEELYVERKSVENYSGNIYRGKIVNLEPSIQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G R+GFL +I P Y++ D + +++ES+ + Sbjct: 61 FGVGRNGFLHISDIEPQYFRQGGYDPEEIMRESDEMAEAAA------------------- 101 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 N E +G + + + + IQE+ K + Sbjct: 102 -------------------------QRNRESGRGSTRVFKGGRPRNKPPIQEIFKRGDEV 136 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE GNKG ++TY+S+ GRY VLMP S+ +SRKI + DRK LK+ L Sbjct: 137 LVQVIKEGIGNKGPTLSTYISIPGRYLVLMPALSRVG-VSRKIEDEDDRKRLKKCLLSLS 195 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G+G I+RTAGA R++ E++RD +YL+RLW + N+ P +YEE +LI R IR Sbjct: 196 PPKGLGFIVRTAGAGRSEDELQRDMDYLLRLWKAIVRRVENTTEPGEIYEESDLIIRTIR 255 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y DI I++ ++ Y +A+DF+K++MP ++ Y+ P P+F + +E ++ ++Q Sbjct: 256 DIYSDDIDHILIDQKESYEKARDFLKMVMPRVVDRLKYYDGPGPLFHKYNLEEEIVKINQ 315 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V LP G ++I+ TEALV+IDVNSG E+ A + N+ AA+EIARQLRLRDL Sbjct: 316 RQVALPDGGSIVIDPTEALVAIDVNSGNFRGNASAEENAFRLNIAAAKEIARQLRLRDLG 375 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV DFIDM ++ R VE+ L++++ DRAR ++ S FGL+EM+RQRIR S+ S Sbjct: 376 GVIVNDFIDMRKESYRRKVERVLRDAMANDRARTKILRTSPFGLIEMTRQRIRPSLKRSI 435 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 K C C+G G +++ S+++ ++R + + + V + +V +L N+KR T+ Sbjct: 436 YKDCPCCEGRGLVKTPESMSIEVVRMLALAVKNKHIVRVTVRVNDEVSAFLNNKKRRTVS 495 Query: 541 EYEARFGVSINVVIGIELADKLFYIE-KGSPVQALV 575 E E +++ ++ L + ++ + + + Sbjct: 496 EMEECGNMTVQILGSEGLFPEHLEVDCRDEHGERVE 531 >gi|262277367|ref|ZP_06055160.1| ribonuclease E [alpha proteobacterium HIMB114] gi|262224470|gb|EEY74929.1| ribonuclease E [alpha proteobacterium HIMB114] Length = 610 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 254/604 (42%), Positives = 368/604 (60%), Gaps = 16/604 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K+LIDAS ++TRV + + V+ +FE+ +KKQ+KGNIYL KV+R+EPSLQAAFVD Sbjct: 1 MDKKILIDASQEKQTRVAITNNGNVDGYEFENINKKQLKGNIYLGKVSRIEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN--DH 118 +G RHGFL F +I +YYQ+P SD+ AL +E + + +++ D Sbjct: 61 FGNERHGFLAFNDIQSEYYQLPQSDKDALKQEEEEIREELNKATENIEESQNEDQEALDE 120 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSN--VEDVKGGSPEDVPKKFKRQYCIQEVIKN 176 + + + I N N E+ E + K K++Y IQEVIK Sbjct: 121 NAQVDLQSNTDEENQVSNEISEVENIENKNALNENQLDKKIEKIRSKRKKRYRIQEVIKP 180 Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 Q++L+QIVKEERG KGAA+TTY+SLAG+Y VLMPNT+KG ISRKI N DR++++EI Sbjct: 181 GQVILIQIVKEERGKKGAALTTYISLAGKYIVLMPNTAKGGGISRKIFNSQDRRHIREII 240 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 LE+P MG+I+RTAGA +T+ +IK D E L+ +WD ++ L S AP+L++EEG+LI Sbjct: 241 NSLEIPKSMGLIVRTAGAKKTQNDIKNDLEVLIGIWDKIKVKTLKSNAPNLIHEEGDLIY 300 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R+IRD D EII+ G+ Y +AK++ ++ + ++++++ P+F +GIE L+ Sbjct: 301 RSIRDFLTYDTEEIIIDGDDAYEKAKNYADIIAKDSLKKIKKHKNKIPLFHSTGIEKYLN 360 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 ++ + VTL S GY+II+ TEALVS+DVNSG++T+E IE TAL TN+EAAEE+ARQ +L Sbjct: 361 KIYDSRVTLKSGGYLIISPTEALVSVDVNSGKATKERNIEKTALATNIEAAEEVARQAKL 420 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RDLAGLIV+DFIDME N R VE+K+KESL+ D+AR QVG ISNFGLLEM+RQR+R S Sbjct: 421 RDLAGLIVIDFIDMENYSNRRLVERKMKESLRSDKARTQVGRISNFGLLEMTRQRLRESY 480 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQK 535 ++ T + S+ S ILR VEE + + V +LY+ Sbjct: 481 IKWET-----------VLSKESFCEKILRKVEEKIFDIPKVKKVEVELSPKTILYMKENM 529 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 I +E +F L + F + + +++T ++ + P K+ + Sbjct: 530 NDEIDFFEKKFKFKTTFTKNENLLSREFKVNFLNNKNKILDTYSEISIKLEEPEVLKDNK 589 Query: 596 CVWQ 599 + Sbjct: 590 KNKK 593 >gi|148652236|ref|YP_001279329.1| ribonuclease [Psychrobacter sp. PRwf-1] gi|148571320|gb|ABQ93379.1| RNAse G [Psychrobacter sp. PRwf-1] Length = 613 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 175/612 (28%), Positives = 283/612 (46%), Gaps = 49/612 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ S E+RV VL + V E+ E +K + GNIYL V RV P +QAAFV+ Sbjct: 1 MSEELLINVS-PMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQ--------------------------------- 87 G +R FL ++ P +D+ Sbjct: 60 IGQSRTAFLHVNDMRRIARPAPTADKAPEIRHNAKQEPTVLTSMPVDRCEHIAENVVTAS 119 Query: 88 -----ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETE--EESIIS 140 + + + D + ++ G + +E + N + E Sbjct: 120 DTMASVIAETEPAMEADPLSAKTEIEAGSLREKKSALADESDNLKNDLLDNALLEIDSPD 179 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 + ++ + E + R IQ + Q +LVQ+ K++ G KGA +TT + Sbjct: 180 MVGNAITKADTKPAAVKERQIIEPPRHELIQYRLHEGQKILVQVTKDQLGTKGARLTTNI 239 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTK 258 SL RY V +P++ IS++I N +R LK L G+I RTA Sbjct: 240 SLPSRYLVYLPSSEHIG-ISQRIDNEEERHRLKTELGALMQTVNLTGGLIARTAAERVPV 298 Query: 259 IEIKRDFEYLMRLWDNVRELALNS----VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314 +++ D YL++LW ++ S + L+Y+E +L R+IRDL D ++IV Sbjct: 299 AKLEEDIYYLVQLWRTIQARKEASAGSGQSAVLIYQELSLPLRSIRDLVHPDTEKVIVDH 358 Query: 315 EKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIIN 374 E Y E + F K +P + Y P+F +E L + V L S GY+II+ Sbjct: 359 EGMYNEVRQFAKEFVPFIYPRILPYSGEQPLFDVHRVEEDLRDALKRRVDLKSGGYLIID 418 Query: 375 QTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434 QTEA+ +IDVN+G +EDT +TNLEA IARQLRLR+L G+I++DFIDM E++ Sbjct: 419 QTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLRLRNLGGIIILDFIDMLEQQ 478 Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494 + V + L+ L +D A+ ++ +S GL+EM+R+R R S+ + + C C+G G+I+ Sbjct: 479 HKDDVLENLQYQLSQDYAKTKITQVSELGLVEMTRKRTRESLEQQLCEPCKTCEGKGFIK 538 Query: 495 SQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 + +V I R + Y + V H+ V+ LL+ + T+ + E G I Sbjct: 539 TAETVCFEIFREIMRCARTYNSPKKFTVVAHASVIDLLLSSEADTVADLEYLLGRVITFE 598 Query: 554 IGIELADKLFYI 565 + + + I Sbjct: 599 VENLYTQEQYDI 610 >gi|68171666|ref|ZP_00545028.1| Ribonuclease E and G [Ehrlichia chaffeensis str. Sapulpa] gi|88658461|ref|YP_507286.1| ribonuclease [Ehrlichia chaffeensis str. Arkansas] gi|67998913|gb|EAM85603.1| Ribonuclease E and G [Ehrlichia chaffeensis str. Sapulpa] gi|88599918|gb|ABD45387.1| ribonuclease, Rne/Rng family [Ehrlichia chaffeensis str. Arkansas] Length = 606 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 232/605 (38%), Positives = 342/605 (56%), Gaps = 22/605 (3%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++LIDA + + RV VLRD +V E D ES++KK +KGN+Y A V R+EPSLQA F++Y Sbjct: 5 NKRILIDAVYQDGIRVAVLRDGQVVEFDQESKNKKCLKGNVYCAVVKRIEPSLQAVFIEY 64 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G N+HGFLPF EI DYY I +++ L + +D DV +D Sbjct: 65 GANKHGFLPFSEISLDYYNISEEEKEKLYQ-------VLYEDSDVKNDDDVKSVDDSVAC 117 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + N S ++ +++ +N F + Y +Q+VIK Q L+ Sbjct: 118 DTKDQDNVSDCNDKLTLLKKDN-----------LRNGKSKLPFYKLYKVQDVIKLDQKLM 166 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240 QIVKEERGNKGA +T+++L GRY + MPN+ K ISR+I + DRK LK ++ Sbjct: 167 AQIVKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIEDADDRKILKNFLSAIK 226 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P G+I+RTAG+++ + EI++D YL W +++ ++ P L+Y EG++IKR +R Sbjct: 227 LPKESGIIIRTAGSNKNQKEIEQDLSYLQSTWRSIQNSYISVTMPLLLYVEGDIIKRTLR 286 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D ++ +IIVSG Y AK+ +K + + R+ + PIF IE Q+ L+ Sbjct: 287 DYCDENTQDIIVSGSYAYELAKECVKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYG 345 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY++I TEALVSID+NSG+ T E IE+TA +TN+EA +EIARQ+ LR L+ Sbjct: 346 NVVNLPSGGYMVITPTEALVSIDINSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 405 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM + + RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ Sbjct: 406 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAKVQFGYISTFGLMEISRQRVKQSILEAN 465 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T C++CKG G +RS S + ILR + + I + +V Y N KR I Sbjct: 466 TVQCSHCKGVGRVRSLESSSGDILRDIRYCANKNRNKLINISVAGQMVEYFFNNKRQHIA 525 Query: 541 EYEARFGVSINVVIGIELAD-KLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 E E F VS+ + + + F I + + V + S D ++ Sbjct: 526 EIEEEFSVSVKLTVNQNTSSVSDFNISVENDDMLNQGKDAVNVFTVDYKISEDNKLKEEI 585 Query: 599 QDEAL 603 Q Sbjct: 586 QKTPT 590 >gi|73667172|ref|YP_303188.1| ribonuclease E [Ehrlichia canis str. Jake] gi|72394313|gb|AAZ68590.1| RNAse E [Ehrlichia canis str. Jake] Length = 608 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 225/604 (37%), Positives = 336/604 (55%), Gaps = 19/604 (3%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++LIDA + + RV VLRD +V E D ES+ KK +KGN+Y A V R+EPSLQA F++Y Sbjct: 5 NKRILIDAVYQDGIRVAVLRDGQVVEFDQESKDKKCLKGNVYCAVVKRIEPSLQAVFIEY 64 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G N+HGFLPF EI DYY I +++ L + + + + Sbjct: 65 GANKHGFLPFSEISLDYYNISEEEKEKLYQILY----------------EDSDIKNDDDV 108 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + + +++ + N + +D GS F + Y +Q+VIK Q L+ Sbjct: 109 KSVDDSVVCDNKDQDDVNDYNEKLTLLKKDNSKGSYNKSKLPFYKLYKVQDVIKLEQKLM 168 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS-KGETISRKITNPVDRKNLKEIARGLE 240 QI+KEERGNKGA +T+++L GRY + MPN+ K ISR+I + DRK LK ++ Sbjct: 169 AQIIKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIEDADDRKTLKNFLNVIK 228 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P G+I+RTAG+++++ EI++D YL W +++ ++ P L+Y EG++IKR +R Sbjct: 229 LPKESGMIIRTAGSNKSQKEIEQDLSYLQSTWRSIQNSYVSITVPSLLYVEGDIIKRTLR 288 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D ++ +IIVSG Y AK+ +K + + R+ + PIF IE Q+ L+ Sbjct: 289 DYCDENTQDIIVSGSYAYELAKECVKFMFRNRVRLRIY-KGSVPIFSYYKIESQICELYG 347 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY++I TEALVSIDVNSG+ T E IE+TA +TN+EA +EIARQ+ LR L+ Sbjct: 348 NIVNLPSGGYMVITPTEALVSIDVNSGKMTGEDSIEETAYKTNMEAVKEIARQVNLRGLS 407 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDM + + RSVE ++KE+ K D+A+VQ G IS FGL+E+SRQR++ S+LE+ Sbjct: 408 GLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAKVQFGYISTFGLMEISRQRVKQSILEAN 467 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T C++C G G +RS S + ILR + + I + ++ Y N KR I Sbjct: 468 TVQCSHCNGVGRVRSLESSSGDILRDIRYCANKNRNKLINISVAGQMIEYFFNNKRQHIA 527 Query: 541 EYEARFGVSINVVIG-IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E E F VS+ + + F I + + N + N Sbjct: 528 EIEEEFSVSVKLTVNQNTSNISDFNINVENDDISNQNKDVVNIFTVDYKISEDNKLKEEM 587 Query: 600 DEAL 603 + Sbjct: 588 QDTS 591 >gi|325110583|ref|YP_004271651.1| RNAse E [Planctomyces brasiliensis DSM 5305] gi|324970851|gb|ADY61629.1| RNAse E [Planctomyces brasiliensis DSM 5305] Length = 534 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 187/565 (33%), Positives = 303/565 (53%), Gaps = 50/565 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +ML++ EE+R+ ++ D +EEL E ++ GNIY ++ +EPS+QAAFVD Sbjct: 1 MKREMLVNVYQPEESRIAIVEDGVLEELYVERNSQESFVGNIYKGRIVNIEPSIQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G +GFL ++ +Y++ Sbjct: 61 FGVGSNGFLHVSDVESEYFK---------------------------------------- 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + S+ + + + IQ++ K + Sbjct: 81 ---------HLPPVDPDKRGSRDKSRSSSRGGRPPRRPVNERSVAAKPSIQDIFKRGDEV 131 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++K+ G KG ++TY+S+ GRY VLMP + ISRKI N DRK+L+E+ + L Sbjct: 132 LVQVIKDGIGTKGPTLSTYISIPGRYLVLMPALQRVG-ISRKIENVDDRKHLREVIKQLS 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G+G I+RTAG R++ +++RD YL+RLW + AP VY+E ++I R IR Sbjct: 191 PPPGLGFIVRTAGVDRSEKDLRRDMNYLLRLWKVIVRRIDKHPAPVDVYQESDMITRTIR 250 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y DI +++ E Y+ A++FMK+++P + V+ Y+ PIF + +E ++ + Sbjct: 251 DIYAADIDTVLIDDEDQYKHAREFMKVVLPKHVDRVKYYDGAEPIFHKYNVEQEITKIQN 310 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L G ++I+QTEALV+IDVNSG + E+T+ Q N+ AA+EI+RQ+RLRDL Sbjct: 311 RTVQLEGGGSIVIDQTEALVAIDVNSGTHRVDDDAEETSFQVNMRAAKEISRQIRLRDLG 370 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV DFIDM ++K+ R+VE++L +++++DRAR +V IS FGL+EM+RQRIR S+ S Sbjct: 371 GVIVNDFIDMRQEKHRRAVERQLHDAVQRDRARTKVLRISPFGLIEMTRQRIRPSLKRSI 430 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G+G ++ SVA+ ++R + + + H V YL N+KR ++ Sbjct: 431 YEECPCCNGSGSVKKVESVAIEVMRELMRVCSNNKVRKVALELHHRVATYLANKKRKELI 490 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E R V I ++ + Sbjct: 491 ELEERSNVVITFDSRYDVNPNHMEL 515 >gi|94266078|ref|ZP_01289796.1| Ribonuclease E and G [delta proteobacterium MLMS-1] gi|93453361|gb|EAT03792.1| Ribonuclease E and G [delta proteobacterium MLMS-1] Length = 513 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 164/566 (28%), Positives = 276/566 (48%), Gaps = 59/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+A+ E R+ +L + E E +K + GNIY KV RV P +QAAF+D Sbjct: 1 MSTELLINAT-PYEIRIALLEHGNLAEFHLEHPTEKGLVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R GFL Sbjct: 60 VGLERTGFLYV------------------------------------------------- 70 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + S E E+ A + S +G + I +++ Q + Sbjct: 71 ---DDVLVTSHEVEKRLDRCAKGEGSSPCCGDEGEML----LRRVPGQNIDDLLSEGQEI 123 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KE G+KGA +T +++L R V MP T ISRKI + R+ L++ L Sbjct: 124 LVQVCKEPLGSKGARLTCHITLPCRNLVFMPMTEHIG-ISRKIEDEDVRRMLRQDIESLR 182 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RT + E++ D E+L+ W +++ A + P LVYE+ ++ R +R Sbjct: 183 PS-GTGFIVRTVAELASNEELEADMEFLLHTWSEIQDRAAGAPVPSLVYEDLDITLRVVR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ ++ E++V Y +F++ P V PIF GI+ +++ + Sbjct: 242 DVFSPEVDEVVVDEPATYERVLEFVETFAPHLKGRVCLASGEPPIFESFGIDFEVNRALE 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L GY++I TEAL IDVN+GR ++ +E+T +TN+EAA+EIA QLRLR++ Sbjct: 302 RKIWLRCGGYIVIEPTEALTVIDVNTGRYVGKNGLEETIFKTNMEAAKEIAYQLRLRNIG 361 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDME++++ ++ LKE+ KKD++R+ + +S FGL++M+R+R R + Sbjct: 362 GIIIVDFIDMEDEEHREAIFNTLKEAAKKDKSRLNILRVSEFGLVQMTRKRNREDLEHLL 421 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C+G G +RS + + I R++E + + V H V +L ++ TI Sbjct: 422 CEPCATCQGTGVLRSGRTTSYEIFRTIEREACKKEGPTVTVRVHPRVAELMLREEARTID 481 Query: 541 EYEARFGVSINVVIGIELADKLFYIE 566 E + G I+V+ + + +++E Sbjct: 482 YLEKQCGKRIHVMPLKDYHPERYHLE 507 >gi|71065057|ref|YP_263784.1| RNAse G [Psychrobacter arcticus 273-4] gi|71038042|gb|AAZ18350.1| RNAse G [Psychrobacter arcticus 273-4] Length = 528 Score = 377 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 162/571 (28%), Positives = 260/571 (45%), Gaps = 52/571 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ S E+RV VL + + E+ E HK + GNIYL V RV P +QAAFVD Sbjct: 1 MSEELLINIS-PMESRVAVLDNGILGEIYIERHHKLGLVGNIYLGTVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G +R FL ++ +E S+ D + D Sbjct: 60 IGQSRTAFLHVNDMQ---------------REPRPVAKSSKIEKTDDERTIIEATADDLA 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ S E + IQ + Q + Sbjct: 105 VTPPVVSTQSTEAV-----------------------------LISKTLIQHRLHESQRI 135 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ K++ G+KGA +TT +SL RY V +P++ R + LK L Sbjct: 136 LVQVTKDQLGSKGARLTTNISLPSRYLVYLPSSDHIGISQRIDGEDERTR-LKTELNSLM 194 Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---LVYEEGNLI 295 G+I RTA +++ D YL++LW + L+Y+E +L Sbjct: 195 QTVNLKGGLIARTAAERVPVDKLEEDIYYLLQLWRTICARHQEMKQHQSSELIYQELSLP 254 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 R+IRDL D ++I+ + Y + + F K +P + Y +F +E L Sbjct: 255 LRSIRDLVHADTEKVIIDNAQIYEQVRYFAKEFVPFVYDRIVHYTAEQSLFDVHRVEDDL 314 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + V L S GY+II+QTEA+ +IDVN+G +EDT +TNLEA IARQLR Sbjct: 315 RDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLR 374 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+L G+I++DFIDM E+++ + + L+ L +D A+ ++ +S GL+EM+R+R R S Sbjct: 375 LRNLGGIIILDFIDMLEQQHKDDILESLQSQLVQDYAKTKITQVSELGLVEMTRKRTRES 434 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQ 534 + + + C+ C+G G++++ +V I R + Y + V H+ V+ LL Sbjct: 435 LGQQLCEPCSTCQGRGFVKTAETVCFEIFREIMRCARTYNSPKKFTVVAHAAVIDLLLTS 494 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565 + T+ + E G I + + + I Sbjct: 495 ESDTVADLEYLLGRVITFDVENLYTQEQYDI 525 >gi|297569133|ref|YP_003690477.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2] gi|296925048|gb|ADH85858.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2] Length = 511 Score = 376 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 158/564 (28%), Positives = 281/564 (49%), Gaps = 57/564 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+A+ E R+ +L + E E +K + GN+Y +V RV P +QAAFVD Sbjct: 1 MSTQLLINAT-PYEIRIALLEHGNLAEFYLEHPAEKGLVGNVYRGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R GFL Sbjct: 60 VGLERTGFLYV------------------------------------------------- 70 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + E+ + + + + G + + ++ Q I++++ Q + Sbjct: 71 ----DDVLVTSNEVEKRLARCDRGDGTGHDTCCGHDTDPLCRRHPGQ-NIEDLLSEGQDI 125 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ KE G+KGA +T +++L R V MP T ISRKI + R+ L++ L Sbjct: 126 MVQVCKEPLGSKGARLTCHITLPCRNLVFMPRTEHIG-ISRKIEDEDVRQMLRQDIEALR 184 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RT + T +++ D E+L+ W+ ++ A + P L+Y++ ++ R +R Sbjct: 185 PA-GAGFIVRTVAETATNEDLEADMEFLLHTWEEIQARATTAPVPGLIYQDLDITLRVVR 243 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ ++ +++V + Y+ F++ +P V + PIF G+E++++ + Sbjct: 244 DVFSPEVDQVVVDEPETYQRVLQFVETFVPHLKGRVELAPEDPPIFDAYGVELEVNRALE 303 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L GY+II TEAL IDVN+GR ++ +E+T +TN+EAA+EIA QLRLR++ Sbjct: 304 RKIWLRCGGYIIIEPTEALTVIDVNTGRYVGKNGLEETIFKTNMEAAKEIAYQLRLRNIG 363 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDME++++ +V LKE+ KKD++R+ + +S FGL++M+R+R R + Sbjct: 364 GIIIVDFIDMEDEEHREAVFNALKEAAKKDKSRLNILRVSEFGLVQMTRKRNREDLEHLM 423 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C+G G IRS S+ + R +E + A ++V H V LL ++ T+ Sbjct: 424 CEPCNCCQGTGVIRSSRSLCYDVFRQIEREACRRQAETVVVRVHPRVAELLLREEAHTVD 483 Query: 541 EYEARFGVSINVVIGIELADKLFY 564 E + G I ++ + + + Sbjct: 484 YLEKKCGKRIQIMPIKDFHPEKYE 507 >gi|283780210|ref|YP_003370965.1| ribonuclease, Rne/Rng family [Pirellula staleyi DSM 6068] gi|283438663|gb|ADB17105.1| ribonuclease, Rne/Rng family [Pirellula staleyi DSM 6068] Length = 543 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 191/579 (32%), Positives = 306/579 (52%), Gaps = 42/579 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++MLI+ S EE R+ ++ D +EEL E + GNIY ++ +EPS+QAAFVD Sbjct: 7 MKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVD 66 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G R+GFL ++ P Y++ D Sbjct: 67 FGVGRNGFLHISDVEPQYFRQGGYD---------------------------------PA 93 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E++ +T E+ + + + + IQE+ + + Sbjct: 94 EQIGGGRLADIDTGEDDDAP--------RPQQRRERRPPRGGRPRVKPPIQEIFRRGDEV 145 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE G KG ++TY+S+ GRY VLMP + +SRKI + R+ L++ L Sbjct: 146 LVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRVG-VSRKIEDDELRRTLRDTLLELN 204 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G+G I+RTAG RTK E+ RD YL+RLW + + P +YEE ++I R IR Sbjct: 205 PPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKKTAGPATIYEESDMIIRTIR 264 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ +I I + + + AK+F++L+MP + QYE P+F + +E ++ ++Q Sbjct: 265 DIFTAEIDAIYIDHPEAFERAKEFLQLVMPRNVNRLHQYEGREPLFHKYKVEQEIVQIYQ 324 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L G ++I+QTEALV+IDVNSG E ++TA Q N+ AA+EIARQLRLRDL Sbjct: 325 RKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAYQLNISAAKEIARQLRLRDLG 384 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV DFIDM ++++ R VE+ L++++++DRAR ++ S FGL+EM+RQRIR S+ S Sbjct: 385 GVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTSPFGLIEMTRQRIRPSLKRSV 444 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C G G +++ S+A+ ++R + Q + V +S+V YL N+KR I+ Sbjct: 445 YGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVTVRVNSEVASYLNNKKRREIM 504 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 + E + + ++ + +E +N Sbjct: 505 KLEDDAQMVVQILSHEGAFPEHLQVECRDNEGRELNLPA 543 >gi|77920177|ref|YP_357992.1| RNase EG [Pelobacter carbinolicus DSM 2380] gi|77546260|gb|ABA89822.1| RNAse G [Pelobacter carbinolicus DSM 2380] Length = 503 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 286/565 (50%), Gaps = 65/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++I+ + ETRV +L + + EL E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MTKDLVINTT-SHETRVALLENGHIAELYIERTRERGIVGNIYKGKVLRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +D ++ E D+ + + + Sbjct: 60 IGLEKAAFLY------------VADVLDQMQA-------LERFIDEGENENGLPDEEGRD 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 P I++++K Q + Sbjct: 101 SAALP-------------------------------------------PIEDLLKEGQEV 117 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KE G KGA +T ++SL GR+ V MP ISR+I N +++ L+E+ + Sbjct: 118 LVQVSKEPIGTKGARITAHISLPGRHLVYMPTVDHVG-ISRRIENEEEKERLRELIEEMR 176 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G G I+RTA ++ +++ D E+L LW+ + L + AP L+Y + ++ + +R Sbjct: 177 SP-GSGFIVRTAAEGKSAEDMRSDMEFLAGLWNGICSLRDHKGAPCLIYSDLDVTSKVLR 235 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ +D+ I+V + Y + F++ MP ++ YE P+F G+EV++D Sbjct: 236 DILTEDVRRIVVDSSREYDKIVRFIETFMPKLTYVIELYEGDEPVFDAFGLEVEIDRALG 295 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +ID+N+GR +H +EDT L+TNLEA +E+A QLRLR++ Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDINTGRFVGKHNLEDTILKTNLEAVKEVAYQLRLRNIG 355 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLI++DFIDME++ + V L+E+LK DRA+ + IS GL+EM+R+R+R ++ + Sbjct: 356 GLIIIDFIDMEKEAHREKVYVALEEALKGDRAKTNILKISELGLVEMTRKRVRENLTRTL 415 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+S++ I R + + + + H + + +++R I Sbjct: 416 CEPCPYCEGKGYVKSRSTMVYEIFRELRREIRNLAGAQVTLLVHPSIASVICDEERWEID 475 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 + E +G I + + + F I Sbjct: 476 DLEQAYGKQIAITARFDFHQEQFEI 500 >gi|330814310|ref|YP_004358549.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Candidatus Pelagibacter sp. IMCC9063] gi|327487405|gb|AEA81810.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Candidatus Pelagibacter sp. IMCC9063] Length = 641 Score = 375 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 253/614 (41%), Positives = 365/614 (59%), Gaps = 18/614 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LIDAS ++TRV + DN VEE ++E+E KKQ+KGNI+L +++R+EPSLQAAFVD Sbjct: 1 MEKEILIDASQEKQTRVAIKSDNGVEEYEYENEQKKQLKGNIFLGRISRIEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G RHGFL F +I YYQIP +D++ +LKE + + E ++++ D N+ Sbjct: 61 FGNERHGFLAFNDIQTQYYQIPLADKELILKEEEELRKELEEETNELSPEDSNSSNESES 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVS------NVEDVKGGSPEDVPKKFKRQYCIQEVI 174 ++ + S E+ D + + KK ++Y IQEVI Sbjct: 121 DDSEDNSIESTPDEDLKNSEDREDSSEIESPELEKNSYEKKISDIRAKKKFKRYRIQEVI 180 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K QI+L+QIVKEERG KGAA+TT+LSLAG+Y VLMPNT+KG ISRKI N DRKN++ Sbjct: 181 KPGQIILLQIVKEERGKKGAALTTFLSLAGKYIVLMPNTAKGGGISRKIFNSQDRKNIRG 240 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 I + L +P MG+I+RTAGA +T+ EIK D + L+++W+ ++E L S AP +++EEG++ Sbjct: 241 IIKELTIPETMGLIVRTAGAKKTQNEIKNDLDVLVQIWEEIKEKTLTSNAPTMIHEEGDV 300 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I R IRD + DI E+ V G KG+ +AK + +++ + +++Y+ P+F IE Sbjct: 301 IYRTIRDFFSNDIKEVTVDGAKGFDKAKKYAEIIAKDQVKKIKKYKGKIPLFHSKEIEKY 360 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L+ + + + L S GY+IIN TEALV+ID+NSGRST+E IE TAL TN+EAA EIARQ Sbjct: 361 LNQIFEPRINLKSGGYLIINPTEALVAIDINSGRSTKERNIEKTALNTNIEAAVEIARQA 420 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 +LRDLAGLIV+DFIDME N R VEKKLKE+L+ D+ARVQVG ISNFGLLEM+RQR+R Sbjct: 421 KLRDLAGLIVIDFIDMENYSNRRLVEKKLKEALRNDKARVQVGKISNFGLLEMTRQRLRE 480 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLN 533 S ++ T I S S + IL+ +EE + + V ++ ++ Sbjct: 481 SSIQWKT-----------ILSVESFSQKILKLIEEKIFSIPKVKTVDVDLPKKIIDFIQA 529 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + I +E +F I + + F I + + + ++K Sbjct: 530 NMKDEIDFFEKKFKFKIKFNANPDFLSEDFKISFKDSKKKELEELKNEEEVAIEEPFNKE 589 Query: 594 IECVWQDEALLPIP 607 P Sbjct: 590 KAFHKDTSDSDDKP 603 >gi|326565674|gb|EGE15837.1| ribonuclease G [Moraxella catarrhalis 12P80B1] Length = 542 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 178/573 (31%), Positives = 274/573 (47%), Gaps = 42/573 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+R+ VL D E+ E K + GNIYL V RV P +QAAFVD Sbjct: 1 MSEELLINYT-PMESRMAVLTDGVTSEILIERHQKLGLVGNIYLGTVARVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL ++ K + + EA +T + ++ S Sbjct: 60 IGQARTAFLHANDMQ---------------KPKRSSDSLDEAPPAPITQLHIAHQSNASQ 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +E A +S + + N E IQ ++ + Sbjct: 105 DERAEQNGYSSAIDIQRPALPKKPESPNAE------------------LIQYRLREGDKI 146 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VK+E G KGA +TT +SL RY V +P + +S +I +R LKEI L Sbjct: 147 LVQVVKDELGTKGARLTTNISLPSRYLVYLPTNDEYVGVSIRIEETEERTRLKEILTQLM 206 Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGN 293 A G+I RTA ++ ++K D YL++LW + ++ L+Y+E + Sbjct: 207 QNANLKGGLIARTAAEEMSESKLKEDIYYLLQLWQTIIARQAAIRLHSNKRSELIYQELS 266 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L R IRDL + +++++ E Y E F + +P A +V Y P+F +E Sbjct: 267 LPLRCIRDLVNEKTTKVLIDNEMMYHEVAHFAQEFVPFIAPMVTHYAGETPLFDLYRVEE 326 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 L + + V L S GY+II+QTEA+ +IDVN+G C+EDT +TNLEA IARQ Sbjct: 327 DLQNALKRRVELKSGGYLIIDQTEAMTTIDVNTGSYVGARCLEDTVYKTNLEATHAIARQ 386 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR+L G+I++DFIDM E+ + V L+E L D A+ + +S GL+EM+R+R R Sbjct: 387 IRLRNLGGIIILDFIDMSEEVHRADVLASLQEQLTHDYAKTNITQVSELGLVEMTRKRTR 446 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLL 532 S+ + + C C G GYI++ +V I R + Y V HS V+ +L Sbjct: 447 ESLPQQLCEPCPVCDGKGYIKTAETVCFEIFREIMRYGRTFNKPKQFTVIAHSSVIDMML 506 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + T+ + E G I I + + I Sbjct: 507 SSEAGTVADLEYLIGKPIRFEIENFFTPEQYNI 539 >gi|326566243|gb|EGE16395.1| ribonuclease G [Moraxella catarrhalis 103P14B1] gi|326567105|gb|EGE17227.1| ribonuclease G [Moraxella catarrhalis BC1] gi|326572270|gb|EGE22265.1| ribonuclease G [Moraxella catarrhalis BC8] gi|326574612|gb|EGE24552.1| ribonuclease G [Moraxella catarrhalis O35E] gi|326574868|gb|EGE24798.1| ribonuclease G [Moraxella catarrhalis 101P30B1] Length = 542 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 177/573 (30%), Positives = 274/573 (47%), Gaps = 42/573 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+R+ VL D E+ E K + GNIYL V RV P +QAAFVD Sbjct: 1 MSEELLINYT-PMESRMAVLTDGVTSEILIERHQKLGLVGNIYLGTVARVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL ++ K + + EA +T + ++ S Sbjct: 60 IGQARTAFLHANDMQ---------------KPKRSSDSLDEAPPAPITQLRIAHQSNASQ 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +E A +S + + N E IQ ++ + Sbjct: 105 DERAEQNGYSSAIDIQRPALPKKPESPNAE------------------LIQYRLREGDKI 146 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VK+E G KGA +TT +SL RY V +P + +S +I +R LK+I L Sbjct: 147 LVQVVKDELGTKGARLTTNISLPSRYLVYLPTNDEYVGVSIRIEETEERTRLKDILTQLM 206 Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGN 293 A G+I RTA ++ ++K D YL++LW + ++ L+Y+E + Sbjct: 207 QNANLKGGLIARTAAEEMSESKLKEDIYYLLQLWQTIIARQAATRLHSNKRSELIYQELS 266 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L R IRDL + +++++ E Y E F + +P A +V Y P+F +E Sbjct: 267 LPLRCIRDLVNEKTTKVLIDNEMMYHEVAHFAQEFVPFIAPMVTHYAGETPLFDLYRVEE 326 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 L + + V L S GY+II+QTEA+ +IDVN+G C+EDT +TNLEA IARQ Sbjct: 327 DLQNALKRRVELKSGGYLIIDQTEAMTTIDVNTGSYVGARCLEDTVYKTNLEATHAIARQ 386 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR+L G+I++DFIDM E+ + V L+E L D A+ + +S GL+EM+R+R R Sbjct: 387 IRLRNLGGIIILDFIDMSEEVHRADVLASLQEQLTHDYAKTNITQVSELGLVEMTRKRTR 446 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLL 532 S+ + + C C G GYI++ +V I R + Y V HS V+ +L Sbjct: 447 ESLPQQLCEPCPVCDGKGYIKTAETVCFEIFREIMRYGRTFNKPKQFTVIAHSSVIDMML 506 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + T+ + E G I I + + I Sbjct: 507 SSEAGTVADLEYLIGKPIRFEIENFFTPEQYNI 539 >gi|296113799|ref|YP_003627737.1| ribonuclease G [Moraxella catarrhalis RH4] gi|295921493|gb|ADG61844.1| ribonuclease G [Moraxella catarrhalis RH4] gi|326562144|gb|EGE12472.1| ribonuclease G [Moraxella catarrhalis 7169] gi|326564491|gb|EGE14717.1| ribonuclease G [Moraxella catarrhalis 46P47B1] gi|326568369|gb|EGE18449.1| ribonuclease G [Moraxella catarrhalis BC7] gi|326576192|gb|EGE26107.1| ribonuclease G [Moraxella catarrhalis CO72] Length = 542 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 178/573 (31%), Positives = 274/573 (47%), Gaps = 42/573 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+R+ VL D E+ E K + GNIYL V RV P +QAAFVD Sbjct: 1 MSEELLINYT-PMESRMAVLTDGVTSEILIERHQKLGLVGNIYLGTVARVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL ++ K + + EA +T + ++ S Sbjct: 60 IGQARTAFLHANDMQ---------------KPKRSSDSLDEAPPAPITQLRIAHQSNASQ 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +E A +S + + N E IQ ++ + Sbjct: 105 DERAEQNGYSSAIDIQRPALPKKPESPNAE------------------LIQYRLREGDKI 146 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VK+E G KGA +TT +SL RY V +P + +S +I +R LKEI L Sbjct: 147 LVQVVKDELGTKGARLTTNISLPSRYLVYLPTNDEYVGVSIRIEETEERTRLKEILTQLM 206 Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGN 293 A G+I RTA ++ ++K D YL++LW + ++ L+Y+E + Sbjct: 207 QNANLKGGLIARTAAEEMSESKLKEDIYYLLQLWQTIIARQAATRLHSNKRSELIYQELS 266 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L R IRDL + +++++ E Y E F + +P A +V Y P+F +E Sbjct: 267 LPLRCIRDLVNEKTTKVLIDNEMMYHEVAHFAQEFVPFIAPMVTHYAGETPLFDLYRVEE 326 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 L + + V L S GY+II+QTEA+ +IDVN+G C+EDT +TNLEA IARQ Sbjct: 327 DLQNALKRRVELKSGGYLIIDQTEAMTTIDVNTGSYVGARCLEDTVYKTNLEATHAIARQ 386 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR+L G+I++DFIDM E+ + V L+E L D A+ + +S GL+EM+R+R R Sbjct: 387 IRLRNLGGIIILDFIDMSEEVHRADVLASLQEQLTHDYAKTNITQVSELGLVEMTRKRTR 446 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLL 532 S+ + + C C G GYI++ +V I R + Y V HS V+ +L Sbjct: 447 ESLPQQLCEPCPVCDGKGYIKTAETVCFEIFREIMRYGRTFNKPKQFTVIAHSSVIDMML 506 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + T+ + E G I I + + I Sbjct: 507 SSEAGTVADLEYLIGKPIRFEIENFFTPEQYNI 539 >gi|93005312|ref|YP_579749.1| ribonuclease [Psychrobacter cryohalolentis K5] gi|92392990|gb|ABE74265.1| RNAse G [Psychrobacter cryohalolentis K5] Length = 528 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 161/571 (28%), Positives = 261/571 (45%), Gaps = 52/571 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ S E+RV VL + + E+ E HK + GNIYL V RV P +QAAFVD Sbjct: 1 MSEELLINIS-PMESRVAVLDNGILGEIYIERHHKLGLVGNIYLGTVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G +R FL ++ +E A S+ D + + D Sbjct: 60 IGQSRTAFLHVNDMQ---------------REPRPAAKSSKVEKTDDERTIIEVTADDLA 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 I+ + E + IQ + Q + Sbjct: 105 ITPPVISTQNTEVV-----------------------------PVSKTLIQHRLHESQRI 135 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ K++ G+KGA +TT +SL RY V +P++ R + LK L Sbjct: 136 LVQVTKDQLGSKGARLTTNISLPSRYLVYLPSSEHIGISQRIDGEEERTR-LKTELTSLM 194 Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---LVYEEGNLI 295 G+I RTA +++ D YL++LW + L+Y+E +L Sbjct: 195 QTVNLKGGLIARTAAERVPVDKLEEDIYYLLQLWRTICARRQEMKPNQSSELIYQELSLP 254 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 R+IRDL ++++ + Y + + F K +P + Y +F +E L Sbjct: 255 LRSIRDLVHAGTEKVVIDNAQIYEQVRYFAKEFVPFVYDRIVHYTAEQSLFDVHRVEDDL 314 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + V L S GY+II+QTEA+ +IDVN+G +EDT +TNLEA IARQLR Sbjct: 315 RDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLR 374 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+L G+I++DFIDM E+++ + + L+ L +D A+ ++ +S GL+EM+R+R R S Sbjct: 375 LRNLGGIIILDFIDMLEQQHKDDILESLQSQLVQDYAKTKITQVSELGLVEMTRKRTRES 434 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQ 534 + + + C+ C+G G++++ +V I R + Y + V H+ V+ LL Sbjct: 435 LGQQLCEPCSTCQGRGFVKTAETVCFEIFREIMRCARTYNSPKKFTVVAHAAVIDLLLTS 494 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565 + T+ + E G I + + + I Sbjct: 495 ESDTVADLEYLLGRVITFDVENLYTQEQYDI 525 >gi|301058191|ref|ZP_07199241.1| putative Ribonuclease G [delta proteobacterium NaphS2] gi|300447693|gb|EFK11408.1| putative Ribonuclease G [delta proteobacterium NaphS2] Length = 510 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 172/567 (30%), Positives = 295/567 (52%), Gaps = 59/567 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+N+++I+ S ETRV ++ + V EL E + K++ GNIY +V RV P +QAAFVD Sbjct: 1 MSNELIIN-SRSYETRVALVENGVVVELHVERDSGKELMGNIYRGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +++ D+ SD + ++ Sbjct: 60 IGLGRTAFLYVSDVYRDF-----SDFERIM------------------------------ 84 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 N V++ D + ++ + I++++ Q + Sbjct: 85 --------------------LNASEVNDTLDADKIDESLKRQSYQGSFQIEDLLHEGQSI 124 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ KE GNKGA +T+++SL GR+ VLMP + +SRKI + +R+ LK I + + Sbjct: 125 MVQVSKEPLGNKGARLTSHVSLPGRHLVLMPTVNHIG-VSRKIEDKEERERLKGIVKEIN 183 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G I+RT + K +++ + ++L++LW N+R+ P +Y++ + RA+R Sbjct: 184 PG-SFGFIVRTVAENTGKEKLEAEMDFLLKLWANIRDKMEKGHNPGPLYKDLAVTLRAVR 242 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ +++ +IV ++ Y + F++ P V YE PIF GIE+++ Sbjct: 243 DLFTREVDRLIVDSDEEYEKIMAFIETFAPRLKYSVELYEGAGPIFDAFGIEIEISRALG 302 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L S GY++I TEAL SIDVN+G + +E+T L+TNLEA +EIA QLR R++ Sbjct: 303 NKIWLKSGGYIVIELTEALTSIDVNTGSYVGKRNLEETILKTNLEAVKEIAYQLRFRNIG 362 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDME+ N V LKE+L KD+A+ + +S+ GL+EM+R+R R+S+ Sbjct: 363 GLIVIDFIDMEKISNRERVSMALKEALSKDKAKTNILPMSDLGLIEMTRKRTRASLNRLL 422 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRATI 539 ++ C YC G G ++S ++ I R +E + +I + + +V L +++ ++ Sbjct: 423 SEPCAYCDGRGTLKSPKTICYEIFRDLERDYMHPEEGGSIHILVNPEVGKILREEEQGSV 482 Query: 540 VEYEARFGVSINVVIGIELADKLFYIE 566 ++ E R G I ++ + + IE Sbjct: 483 IDLEKRAGKRIIIIGKEHFHQEQYSIE 509 >gi|296120629|ref|YP_003628407.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776] gi|296012969|gb|ADG66208.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776] Length = 537 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 186/562 (33%), Positives = 303/562 (53%), Gaps = 50/562 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +ML++ EE+R+ +L D +EEL E + GNIY ++ +EPS+QAAFVD Sbjct: 1 MRKEMLMNVLQPEESRIAILEDGVLEELYVERNSLENYVGNIYKGRIVNIEPSIQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G R+GFL ++ YY+ Sbjct: 61 FGVGRNGFLHVSDVEYQYYKHLV------------------------------------- 83 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + ++D + +P + + + + IQE+ + + Sbjct: 84 ------------DGPDESFDDDDDEEDEKPRGRPRAPRGLDRTSRGKPPIQEIFRRGSEV 131 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L+Q++KE GNKG ++TY+S+ GRY VLMP + +SRKI + R+ L++ + L Sbjct: 132 LIQVIKEGIGNKGPTLSTYISIPGRYLVLMPGLQRVG-VSRKIGDDSIRRRLRQQLKELS 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G+G I+RTAG R++ +++RD YL+RLW+ + + AP +YEE +++ R IR Sbjct: 191 PPEGLGFIIRTAGIDRSQKDLQRDMNYLLRLWNVIVKRIRKFPAPVDIYEESDMMIRTIR 250 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y +I I + + Y AK+FMK+++P V+ Y+ P+F + G+E ++ + + Sbjct: 251 DIYNSEIENIWIDEPRAYERAKEFMKIVLPRAVDRVQLYDGKEPLFHKHGVEEEIARIQR 310 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L G ++I+QTEALV+IDVNSG ++ E+ A Q NL AAEEIARQ+RLRDL Sbjct: 311 RHVPLKGGGSIVIDQTEALVAIDVNSGSFRQDENAEENAYQMNLRAAEEIARQIRLRDLG 370 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV DFIDM E+++ R VE+ L +++ +DRAR ++ S FGL+EM+RQRIR S+ S Sbjct: 371 GVIVNDFIDMREERHRRGVERALADAVARDRARTKILRTSPFGLVEMTRQRIRPSLRRSV 430 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G G +++ S+A+ ++R + + I+V V YL N+KR I Sbjct: 431 YEDCPCCAGTGQVKTAESMAIEVMRLLMFHANHQEVTRIVVDVQERVGAYLNNKKRREIS 490 Query: 541 EYEARFGVSINVVIGIELADKL 562 + E ++ V+I++ + + Sbjct: 491 QLEEQYEVAISINSLSNVTPEH 512 >gi|58584753|ref|YP_198326.1| ribonuclease G and E [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419069|gb|AAW71084.1| Ribonucleases G and E [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 590 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 214/596 (35%), Positives = 330/596 (55%), Gaps = 34/596 (5%) Query: 5 MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +LI ++ +E RV + DNRV E + E + KKQ++GNIY+A V RVEPSLQA F++YG Sbjct: 9 LLIENSICSDEVRVALSADNRVVEFEQEFKEKKQLRGNIYIACVKRVEPSLQAVFIEYGK 68 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 N+ GFL F EI PDY+ IP +++ + Sbjct: 69 NKQGFLSFSEISPDYFNIPEKEKETFFE-------------------------------- 96 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + E + + ++D ++N + G+ ++Y +Q+VI Q LLVQ Sbjct: 97 GCLNDDCTEENGNASANISSDSLTNKNVNESGNGFVREVSLYKRYKLQDVISVNQRLLVQ 156 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KEERGNKGA+ TTY++L GRY V MPN+ +SR+I + RK LK+I +++P Sbjct: 157 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDVNVRKQLKDILSSMDLPK 216 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G+I+RT G+ ++K EI++D+ YL LW N+++ A + P L+Y E +LI R+IRD Sbjct: 217 RSGLIIRTIGSGKSKKEIEQDYNYLSSLWQNIQKNASSINVPSLIYNEADLIMRSIRDFC 276 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 + E+IVSG++ + + + + + R Y PIF G+E Q+ L+ V Sbjct: 277 S-NGMEVIVSGKEAFETVRQYARNALKGSKLRYRLYRGFIPIFTYYGVEDQISELYSNRV 335 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 LPS G +II TEA VSIDVNSG+ T E IE+TA +TN+EA EI+RQ+ LR L+GLI Sbjct: 336 KLPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 395 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 VVDFIDM + R+VE ++++ K D+ARVQ I++FGL+ SRQRI+ S+ E T Sbjct: 396 VVDFIDMLRYQYCRAVESAIRQAFKDDKARVQFSYINDFGLMVFSRQRIKPSIQEINTTE 455 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +CKG G ++S + SILR ++ + + + H ++ ++ N KR T+ E Sbjct: 456 CLHCKGIGKVKSNEVIVASILRDLQHIASRNRNRSFDLVAHGAIIAHIFNNKRGTVSTIE 515 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 F + +NV L+ F +++G V + S ++ + + Sbjct: 516 KEFNIKLNVSADSSLSVDTFVLKRGDEVNLSDCKPLQNSGYKIESSSNERADNSEK 571 >gi|58698814|ref|ZP_00373692.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58534672|gb|EAL58793.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 590 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 211/594 (35%), Positives = 329/594 (55%), Gaps = 34/594 (5%) Query: 5 MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +LI +++ E RV + +N+V E + E + KKQ++GNIY+A + R+EPSLQA F++YG Sbjct: 9 LLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 N+ GFL F EI DY+ IP +++ + + Sbjct: 69 NKQGFLSFSEISLDYFNIPEKEKETIFESY------------------------------ 98 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + E ++I + ++D ++ + GS ++Y +Q+VI Q +LVQ Sbjct: 99 --SNDDYTEKGNDTIANVSSDSAASKNVNESGSGFVREVPLYKKYKLQDVISVNQKVLVQ 156 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KEERGNKGA+ TTY++L GRY V MPN+ +SR+I + RK LKEI + +P Sbjct: 157 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKEILSSINLPK 216 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G+I+RT G+ + K EI++D+ YL LW ++++ A + P L+Y E ++I R++RD Sbjct: 217 RSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNVPSLIYNEADVIMRSVRDFC 276 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 D E+IVSG++ + + + + R Y PIF GIE Q+ L+ V Sbjct: 277 S-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRLYRGYAPIFTYYGIEDQISELYSNRV 335 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 LPS G +II TEA VSIDVNSG+ T E IE+TA +TN+EA EI+RQ+ LR L+GLI Sbjct: 336 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 395 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 VVDFIDM + + R+VE +K++ K D+A+VQ I++FGL+ SRQRI+ ++ E T Sbjct: 396 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 455 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +CKG G ++S + SILR ++ + + + HS V+ ++ N KR T+ E Sbjct: 456 CLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 515 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 F +++NV I L F +++G V + S ++ + Sbjct: 516 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQIGDSSNEEADNS 569 >gi|257454045|ref|ZP_05619319.1| ribonuclease G [Enhydrobacter aerosaccus SK60] gi|257448523|gb|EEV23492.1| ribonuclease G [Enhydrobacter aerosaccus SK60] Length = 521 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 166/571 (29%), Positives = 258/571 (45%), Gaps = 59/571 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ S E+RV VL D + E+ E K GNIYL V RV P +QAAF+D Sbjct: 1 MTEELLINIS-PSESRVAVLEDGILNEIFIERHSKLGSVGNIYLGTVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G +R FL ++ P ++ Sbjct: 60 IGQSRTAFLHVNDMQ------------------------------------TLRPKLSAI 83 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E P T + + + I+ + Q + Sbjct: 84 ELPKPQNPAIDNTLDPDTTTLAMTTTTYQPPPSEL--------------IENRLYEGQRI 129 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++K++ G+KGA +TT +SL RY V +P R + +R+ LK L Sbjct: 130 LVQVIKDQLGSKGARLTTDVSLPSRYLVYLPYGEHIGISQRI--DGDERERLKTQLGELM 187 Query: 241 VPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---LVYEEGNLI 295 G+I RTA + + +++ D YL++LW V+ + L+Y++ +L Sbjct: 188 HQVNLQGGLIARTAAENIPQSKLEEDIYYLLQLWRMVQARREQTPTHRRFELIYQDLSLP 247 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 RAIRDL + + V + + + F K +P ++ YE +F +E L Sbjct: 248 LRAIRDLIGEQTERVTVDNARVFDAIRHFAKEFVPLIYPRIQLYEGEQALFDVHRVEEDL 307 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 V L S GY+II+QTEA+ +IDVN+G +EDT +TNLEA IARQLR Sbjct: 308 KDALNRRVNLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLR 367 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+L G+I++DFIDM+E+++ V L+E LK+D A+ + +S GL+EM+R+R R S Sbjct: 368 LRNLGGIIILDFIDMQEQQHRDDVLASLQEQLKRDYAKTNISEVSALGLIEMTRKRTRES 427 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQ 534 + + + C C G G+++S +V L I R + Y A V +S V+ L Sbjct: 428 LQQQLCEPCPTCGGKGFVKSAETVCLEIFRELMRCARTYNAPKKFTVVANSGVIDLLETI 487 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565 + T+ E E G IN+ + + I Sbjct: 488 EADTVAEMEYLLGRPINLESDNRFNQEQYDI 518 >gi|225630610|ref|YP_002727401.1| Ribonuclease, Rne/Rng family protein [Wolbachia sp. wRi] gi|225592591|gb|ACN95610.1| Ribonuclease, Rne/Rng family protein [Wolbachia sp. wRi] Length = 590 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 211/594 (35%), Positives = 329/594 (55%), Gaps = 34/594 (5%) Query: 5 MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +LI +++ E RV + +N+V E + E + KKQ++GNIY+A + R+EPSLQA F++YG Sbjct: 9 LLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 N+ GFL F EI DY+ IP +++ + + Sbjct: 69 NKQGFLSFSEISLDYFNIPEKEKETIFESY------------------------------ 98 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + E ++I + ++D ++ + GS ++Y +Q+VI Q +LVQ Sbjct: 99 --SNDDYTEKGNDTIANVSSDSAASKNVNESGSGFVREVPLYKKYKLQDVISVNQKVLVQ 156 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KEERGNKGA+ TTY++L GRY V MPN+ +SR+I + RK LKEI + +P Sbjct: 157 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKEILSSINLPK 216 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G+I+RT G+ + K EI++D+ YL LW ++++ A + P L+Y E ++I R++RD Sbjct: 217 RSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNVPSLIYNEADVIMRSVRDFC 276 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 D E+IVSG++ + + + + R Y PIF GIE Q+ L+ V Sbjct: 277 S-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRLYRGYAPIFTYYGIEDQISELYSNRV 335 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 LPS G +II TEA VSIDVNSG+ T E IE+TA +TN+EA EI+RQ+ LR L+GLI Sbjct: 336 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 395 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 VVDFIDM + + R+VE +K++ K D+A+VQ I++FGL+ SRQRI+ ++ E T Sbjct: 396 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 455 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +CKG G ++S + SILR ++ + + + HS V+ ++ N KR T+ E Sbjct: 456 CLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 515 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 F +++NV I L F +++G V + S ++ + Sbjct: 516 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQVGDSSNEEADNS 569 >gi|42520751|ref|NP_966666.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410491|gb|AAS14600.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 587 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 211/594 (35%), Positives = 327/594 (55%), Gaps = 37/594 (6%) Query: 5 MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +LI ++ E RV + +N+V E + E + KKQ++GNIY+A + R+EPSLQA F++YG Sbjct: 9 LLIENSICSNEVRVALSINNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 N+ GFL F EI DY+ IP +++ + + Sbjct: 69 NKQGFLSFSEISLDYFNIPEKEKETIFE-------------------------------- 96 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + EE+ + ++D ++ GS ++Y +Q+VI Q +LVQ Sbjct: 97 ---GYSNDDCIEEASANVSSDSAASKNVNGSGSGFVREVPLYKKYKLQDVISVNQKVLVQ 153 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KEERGNKGA+ TTY++L GRY V MPN+ +SR+I + RK LKEI + +P Sbjct: 154 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKEILSSINLPK 213 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G+I+RT G+ + K EI++D+ YL LW ++++ A + P L+Y E ++I R++RD Sbjct: 214 RSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNVPSLIYNEADVIMRSVRDFC 273 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 D E+IVSG++ + + + + R Y PIF GIE Q+ L+ V Sbjct: 274 S-DGIEVIVSGKEAFEAVRQYANNALKGSKLCYRLYRGYAPIFTYYGIEDQISELYSNRV 332 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 LPS G +II TEA VSIDVNSG+ T E IE+TA +TN+EA EI+RQ+ LR L+GLI Sbjct: 333 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 392 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 VVDFIDM + + R+VE +K++ K D+A+VQ I++FGL+ SRQRI+ ++ E T Sbjct: 393 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 452 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +CKG G ++S + SILR ++ + + + HS V+ ++ N KR T+ E Sbjct: 453 CLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 512 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 F +++NV I L F +++G V + S ++ + Sbjct: 513 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQIGDSSNEEADNS 566 >gi|116749044|ref|YP_845731.1| ribonuclease [Syntrophobacter fumaroxidans MPOB] gi|116698108|gb|ABK17296.1| RNAse G [Syntrophobacter fumaroxidans MPOB] Length = 530 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 172/573 (30%), Positives = 294/573 (51%), Gaps = 49/573 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++I+ S ETRV ++ + +V EL E + I GNIY +V +V P +QAAFVD Sbjct: 1 MSAELIINGS-AFETRVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 + FL +IH P D + LL + + D E V G + L Sbjct: 60 IDLEKAAFLYVSDIH-----HPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDL 114 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +++ I+E ++ Q + Sbjct: 115 -----------------------------------------QRYYSSVPIEERLQEGQEI 133 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KE G+KGA +TT+++L GR+ V MP +SR+I N V+RK L+EI ++ Sbjct: 134 LVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHVG-VSRRIENEVERKRLREIMCEIK 192 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G I+RTA +++ + ++L+++W N++ ++ P LVY+E ++ RA+R Sbjct: 193 PSH-CGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSLVYQELDITLRAVR 251 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ K++ +++ +++ +F++ +P+ + YE PIF GIE+++ Sbjct: 252 DLFTKEVDRLVIDSRSEHKKITNFIETFLPALQSSIELYEGDEPIFDAYGIEMEVQRALS 311 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L S GY++I TEAL ++DVN+GR + +E+T L+TNLEA +EIA QLRLR++ Sbjct: 312 KKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLEAVKEIAYQLRLRNIG 371 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V LK+++ KD+++ + +S GL+EM+R+R R S+ + Sbjct: 372 GIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLIEMTRKRTRESIGQVL 431 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+ +V ILR +E NI+V H +V ++ R + Sbjct: 432 CEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHPEVAARFCDEDRGPLE 491 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 E I V + + I + Sbjct: 492 RVEETLHARIMVKGDPGFHLEQYEIAPLESEKR 524 >gi|206890648|ref|YP_002248021.1| ribonuclease G [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742586|gb|ACI21643.1| ribonuclease G [Thermodesulfovibrio yellowstonii DSM 11347] Length = 514 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 177/568 (31%), Positives = 296/568 (52%), Gaps = 56/568 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+N++LI+ + +E RV +L +V E E + GNIY KV +V +QA FVD Sbjct: 1 MSNELLINVTR-QECRVALLEGGQVVEFYIERKGDSSYVGNIYKGKVVKVLKGMQACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I + + + + D E Sbjct: 60 IGLDKAAFLYVDDI-----------KGGIKELYPFLEGDEET------------------ 90 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +++ E++ + K + I+E+++ Q + Sbjct: 91 -----------------------EIIPKFEELSKSRKPEEIKLDFKDISIEELVQEGQEI 127 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ K+ G KGA VT+ ++L GRY VLMP +SRKI + RK LKE+A ++ Sbjct: 128 LVQVAKDPMGTKGARVTSRITLPGRYVVLMPGMEHIG-VSRKIEDEEKRKELKELAAKIK 186 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G G+I+RT T+ EI++D ++L LWDN+++ + AP L++ E +L+ R++R Sbjct: 187 PP-GFGLIMRTVSEDATEEEIQKDIDFLFLLWDNIQKKKDKTHAPSLIHSEFDLVLRSLR 245 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D +++ +I+ ++ K+F ++ P A + YE PIF GIEV LD + Sbjct: 246 DFMSQNVDRMIIDSYIEWQRLKEFAQVYFPRIADKIELYEGEEPIFDAFGIEVDLDRALE 305 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+QTEA+ IDVN+G+ + +EDT L+TNLEA +EIA Q+RLR+L Sbjct: 306 RKVWLKSGGYIVIDQTEAMTVIDVNTGKFVGKENLEDTILRTNLEAVKEIAYQIRLRNLG 365 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME+++N + + + E +KKDRA+ + I+ G+++M+R+R R S+ Sbjct: 366 GIILIDFIDMEKEENKQKIINAMTEVMKKDRAKTTIYNITELGIVQMTRKRTRESLEHIL 425 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C YC+G G ++S SVA ILR + +++ + V + V L +++R +I Sbjct: 426 CDSCPYCEGKGRVKSIRSVAYEILRKL-KFMTVPQGAELTVVANPSVADLLTDEERDSIE 484 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG 568 E E + I + L + + + K Sbjct: 485 EIENIKKIRITIKKDSMLHQENYSLHKN 512 >gi|332977664|gb|EGK14432.1| ribonuclease G [Psychrobacter sp. 1501(2011)] Length = 629 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 184/628 (29%), Positives = 284/628 (45%), Gaps = 65/628 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ S E+RV VL + V E+ E +K + GNIYL V RV P +QAAFV+ Sbjct: 1 MSEELLINVS-PMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVE 59 Query: 61 YGGNRHGFLPF----------------LEIHPDYYQIPFS------DRQALLKESNIAQT 98 G +R FL E Q P DR A L E+ T Sbjct: 60 IGQSRTAFLHVNDMRRLPRPTAVEEKSSEPRHHTKQEPRVLTSMPVDRSAHLAENKGQGT 119 Query: 99 DSEAV----------------------ADDVTHGDVTIPNDHSLEEVAPIANFSQETE-- 134 D DV + +E A + N + Sbjct: 120 DDVESIVYDSGASIMPHSADSAMSGMAKVDVEPTGLREKQSALADESANLQNDLIDNGLS 179 Query: 135 ----------EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 E + ++ + E + R IQ + Q +LVQ+ Sbjct: 180 DSSVVDKASFETDSPDKVGNAITQADTKPAPIKERQIIEPPRHELIQYRLHEGQKILVQV 239 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 K++ G KGA +TT +SL RY V +P++ IS++I N +R LK L Sbjct: 240 TKDQLGTKGARLTTNISLPSRYLVYLPSSEHIG-ISQRIDNEEERLRLKTELAQLMQTVN 298 Query: 245 --MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS----VAPHLVYEEGNLIKRA 298 G+I RTA +++ D YL++LW ++ S + L+Y+E +L R+ Sbjct: 299 LTGGLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKEASAGSGQSAVLIYQELSLPLRS 358 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 IRDL D ++IV E Y E + F K +P + Y P+F +E L Sbjct: 359 IRDLVHPDTEKVIVDHEGMYNEVRQFAKEFVPFIYSRILPYMGEQPLFDVHRVEEDLRDA 418 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 + V L S GY+II+QTEA+ +IDVN+G +EDT +TNLEA IARQLRLR+ Sbjct: 419 LKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIARQLRLRN 478 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L G+I++DFIDM E+++ V + L++ L +D A+ ++ +S GL+EM+R+R R S+ + Sbjct: 479 LGGIIILDFIDMLEQEHKDDVLQSLQQQLSQDYAKTKITQVSELGLVEMTRKRTRESLEQ 538 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRA 537 + C C+G G+I++ +V I R + Y + V H+ V+ LL+ + Sbjct: 539 QLCEPCKTCEGKGFIKTAETVCFEIFREIMRCARTYNSPKKFTVVAHASVIDLLLSSEAD 598 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYI 565 T+ + E G I + + + I Sbjct: 599 TVADLEYLLGRVITFEVENLYTQEQYDI 626 >gi|190570603|ref|YP_001974961.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019145|ref|ZP_03334952.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356875|emb|CAQ54249.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995254|gb|EEB55895.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 582 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 213/591 (36%), Positives = 320/591 (54%), Gaps = 39/591 (6%) Query: 5 MLIDASHV-EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +LI+++ E RV +L + RV E + E + KKQ++GNIY+A V R+EP+LQA F++YG Sbjct: 9 LLIESTTCSNEVRVALLVNGRVVEFEQEFKEKKQLRGNIYVAYVKRIEPALQAVFIEYGK 68 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 N+ GFL F EI +Y+ IP + + E D+ V ND+ EE Sbjct: 69 NKQGFLSFSEISLNYFNIP--------------EKEKEIFPDEDYSSGVDCSNDNCTEEG 114 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + S R+Y +Q+VI Q LLVQ Sbjct: 115 LDSTASN----------------------ESSSGFVRGVPLHRKYKLQDVISVNQKLLVQ 152 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KEERGNKGA+ TTY++L GRY V MPN+ +SR+I + RK LK+I + +P Sbjct: 153 LTKEERGNKGASFTTYVTLVGRYCVFMPNSISRGGVSRRIEDTNVRKQLKDILNSINLPK 212 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G G+I+RT GA ++K EI++D+ L LW N+++ + P L+Y E +++ R++RD Sbjct: 213 GSGLIVRTVGAGKSKKEIEQDYNNLTLLWQNIQQNFSSLNVPSLIYNEADVVMRSVRDFC 272 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 D +EIIVS + + + K ++ R R Y PIF +E Q+ L+ V Sbjct: 273 SND-TEIIVSDREVCEAVRKYTKNVLQGKLR-PRLYRGSVPIFTYYRVEDQISELYSNRV 330 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 LPS G ++I TEA VSIDVNSG+ T E IE+TA +TN+EA EI+RQ LR L+GLI Sbjct: 331 ELPSGGSLVITLTEAFVSIDVNSGKMTGEDNIEETAYRTNMEALSEISRQANLRGLSGLI 390 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 VVDFIDM + + ++VE +K++ K D+A+VQ I++FGL+ SRQRI+ ++ E T Sbjct: 391 VVDFIDMLKLEYCKNVEFAIKQAFKDDKAKVQFSFINDFGLMVFSRQRIKPNIQEINTTE 450 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +CKG G ++S V SILR ++ + + + S V+ ++ N KR + E Sbjct: 451 CLHCKGIGRVKSNEVVVASILRDLQHIANKNQNKSFDLIARSAVIAHIFNNKRDMVSTIE 510 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 F +++NV I L F +++G + + S DK Sbjct: 511 KEFNITLNVSIDNSLDADTFILKQGDHINFNDYKPLQNSGCQIVNSRDKEA 561 >gi|302343376|ref|YP_003807905.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075] gi|301639989|gb|ADK85311.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075] Length = 505 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 169/565 (29%), Positives = 274/565 (48%), Gaps = 63/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +LI+A ETRV +L + E+ E + GNIYL +V RV P +QA Sbjct: 1 MSATLLINA-RSYETRVALLENGHCVEVYTERHKHGSLAGNIYLGRVARVLPGMQA---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I +P + Sbjct: 56 ---------AFVDIG-----LPKA------------------------------------ 65 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + D + + Q I+++++ Q L Sbjct: 66 ------AFLYVGDVRPDVSFDEYLAPGAYPDEPEDVAQGGVAAEQGQVRIEQMLQQGQEL 119 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ KE G+KGA +TT+++L G VLMP + R + Sbjct: 120 MVQVAKEPLGSKGARITTHITLPGHNLVLMPTLNHIGVSRRIADEDERNR--LRQIIEQM 177 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G G I RTA ++ +++ + ++L+ LW+++ ++ P++++ + ++ RA+R Sbjct: 178 APGGYGFIARTASENQEPDKLRAEMDFLVSLWESILLRRGRAMVPNMLHRDLSVSLRAVR 237 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL +++ +I+ E+ Y E +F+ +P V Y PIF G+E +L Sbjct: 238 DLCTREVDHMIIDCEQEYYEVVEFVSTFLPRLVPCVEFYRGREPIFDAYGVEHELTRALG 297 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GYV+I +TEAL +IDVN+GR H +E+T L+TNLEA +EIA Q+RLRDL Sbjct: 298 RKVWLKSGGYVVIEKTEALTTIDVNTGRYVGGHNLEETILKTNLEAVKEIACQIRLRDLG 357 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDME++ N V + LK++L+ DR++ V A+S GL+EM+R+R+R S+ ES Sbjct: 358 GLIVIDFIDMEKEANRLRVVESLKDALRGDRSKTNVLAMSPLGLVEMTRKRVRQSLGESL 417 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T+ C YC G+G I+ S+V + R +E L A + V H V +L ++R + Sbjct: 418 TEPCAYCHGSGKIKDASTVCYELFRELERELPHLEAAVVHVAVHPSVAEMMLQEERYVLE 477 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E+ +GV+I V + L + + I Sbjct: 478 ELESNYGVTIQVEADLTLHREHYAI 502 >gi|114778281|ref|ZP_01453140.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1] gi|114551383|gb|EAU53939.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1] Length = 506 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 167/565 (29%), Positives = 288/565 (50%), Gaps = 62/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV + + + EE+ E E + +KGNIY +V RV P +QAAFVD Sbjct: 1 MSVELLVNVT-PFETRVARIENGQAEEIYIERE--RGLKGNIYKGRVQRVLPGIQAAFVD 57 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ GFL +I A+ + +++++ HGD D S Sbjct: 58 IGMDKAGFLYAGDI-------------------ATAKQPALELSEEIDHGDDNEVGDDSS 98 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 P N I +I++ Q L Sbjct: 99 ASNQPRRNA--------------------------------------PPIANLIRDGQEL 120 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ +E +KG +T+ + LAGRY V +P+ I+R++ +PV+R+ L IA + Sbjct: 121 MVQVSREPIASKGPRLTSQVGLAGRYLVYLPHLQHTG-IARRLEDPVERERLLAIAHAIA 179 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G+I+RT + + +I++D +YL+RLW ++ + ++ L+++E NL R +R Sbjct: 180 PEKG-GLIIRTVAEGKQEADIQQDLDYLLRLWGDIEKRTKSAGLGTLIHKELNLYLRVMR 238 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D ++ +I + ++ Y K F + MP ++ + Y PIF G+E ++S + Sbjct: 239 DYVDAEVEKIHIDSKEAYESMKKFARRFMPEVSKRLYYYPGERPIFDVYGVEEAIESALK 298 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S G+++I+QTEAL++IDVNSG +E+T +TNLEA EI QLRLR+L Sbjct: 299 RRVPLKSGGHIVIDQTEALIAIDVNSGSFVGSRNMEETGFKTNLEAVHEIVHQLRLRNLG 358 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDM+E +N + + + L E+LK+D+ + + +S GL+EM+R+R R S+ Sbjct: 359 GIIVVDFIDMQEDENKQRLMEVLDEALKRDKTKTHIVQLSELGLVEMTRKRTRDSLGRML 418 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 K C C G G +S +++ + R V Y ++V H ++ LL+++ ++ Sbjct: 419 MKECGRCGGIGQAKSPTTICYQLFREVVAEARAYPCEKLMVIAHPSIIDLLLSEENQGVL 478 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 + E I++ + A + + Sbjct: 479 QLEEFLKKEISLKSDEDFASDHYEV 503 >gi|251771497|gb|EES52074.1| Ribonuclease G and E [Leptospirillum ferrodiazotrophum] Length = 522 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 170/567 (29%), Positives = 284/567 (50%), Gaps = 50/567 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++LI + EET+V ++ R+ E F+ + + I GNIY KV++V P +QAAFVD Sbjct: 1 MGSEILIHVTE-EETKVAIIEGGRLVEYFFDRKQAQGIVGNIYKGKVSKVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I + + +L Sbjct: 60 IGLEKAAFLYVDDI----------------------------------FVEGSEVLPDAL 85 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ AP A+ +E+ V + + + P K + I+E++ + Q + Sbjct: 86 QDDAPAASPEEESV----------VAPALSEGESAPSPPPPPKKSGRRPIEEILLDSQEV 135 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L+Q K+ KG TTY+SL GRY V MP + +SR+ITN +R LK++ L Sbjct: 136 LLQTTKDPISTKGPRATTYISLPGRYLVYMPQVNHIG-VSRRITNEGERHRLKDLVSSLR 194 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RT T+ E + D +L LW++++ + AP LV + +++ R IR Sbjct: 195 THKG-GYIIRTVAEGMTEDEARMDMVFLDLLWEDIKAKYEQAKAPALVRVDLDVVFRTIR 253 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D D+ +++ +K Y+ +F+K +P+YA + + +F ++ Q+ + Sbjct: 254 DYLTNDVDRLVIDNQKEYQRVLEFVKTYLPAYASKIELWNRKTSLFGEYNVDPQVARALE 313 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I++ EAL IDVN+GR E E+T L+TNLEA EEIA QLRLR++ Sbjct: 314 KKVWLKSGGYLVIDRAEALTVIDVNTGRFVGEKDPEETILKTNLEAVEEIAHQLRLRNIG 373 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++KN V + L+E L +D+AR IS+ GL+EMSR+R+R ++ Sbjct: 374 GIIILDFIDMEKEKNRERVFQGLQELLSRDKARTNALRISDLGLVEMSRKRVREDLVHLL 433 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEY--LLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + C+YC G GY++S ++ I + + +I++ H DV + +K Sbjct: 434 GETCSYCDGKGYVKSVRTIIYEIFEDLRKLPSGRGGKDRRVILYVHPDVEAEMAAEK-PF 492 Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565 + + + V + F I Sbjct: 493 LDAVQQIIRKKVIVKSDPLYHIEEFVI 519 >gi|256821862|ref|YP_003145825.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069] gi|256795401|gb|ACV26057.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069] Length = 498 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 153/565 (27%), Positives = 272/565 (48%), Gaps = 70/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++LI+ + +ETRV ++ + ++E+ E + I GNIY V RV P +QAAFVD Sbjct: 1 MRDEILINVT-PQETRVALVENGVLQEVHLERTTNRGIVGNIYKGIVRRVMPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G DR A L ++I ++ V ++ D Sbjct: 60 IGH---------------------DRAAFLHVADIVAIKNDEEKHAVEGSELLDKQDAHE 98 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + I ++ Q + Sbjct: 99 AD-----------------------------------------------IATLLHEGQKI 111 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ++K+ G+KGA +TT++++ R+ VLMP+ R + LK++ + Sbjct: 112 IVQVIKDPIGSKGARLTTHITIPSRFLVLMPDNPHVGVSQRIEDLDERTR-LKDLLADTD 170 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G I+RTA + IE+ RD ++L +LW + E A + AP LV+E+ L R +R Sbjct: 171 FGGDTGYIIRTAAEGASDIELDRDVKFLSKLWSGISEKAKTTKAPQLVHEDLALELRIMR 230 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ DI + + + ++ ++F+ +P + YE PIF IE ++ + Sbjct: 231 DIIEDDIERVRMDNSQSFKRIQNFVMEFLPEINNRIEHYEGERPIFDLYNIEEEIKKALE 290 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+QTEA+ ++DVN+G +E+T +TNLEAA +ARQLRLR+L Sbjct: 291 RKVPLKSGGYLIIDQTEAMTTVDVNTGAFIGHKNLEETIFRTNLEAATALARQLRLRNLG 350 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDM+++++ R V + L++++++D + + +S GL+EM+R+R R S+ Sbjct: 351 GIIIVDFIDMQDEEHKRHVLRTLEKAVERDHVKTSISEVSTLGLVEMTRKRSRESLERLM 410 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G G++++ ++ I R + Y +V + +VV LL+++ +++ Sbjct: 411 CEPCQQCNGRGFVKTPVTICYEIFREISRASRAYDVQKFLVLANQEVVDCLLDEEASSLA 470 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E I + + + F + Sbjct: 471 ELEVDIDKPIRLQVESLYSPDQFDV 495 >gi|119355890|ref|YP_910534.1| ribonuclease [Chlorobium phaeobacteroides DSM 266] gi|119353239|gb|ABL64110.1| ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides DSM 266] Length = 565 Score = 350 bits (896), Expect = 8e-94, Method: Composition-based stats. Identities = 159/578 (27%), Positives = 284/578 (49%), Gaps = 24/578 (4%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++L++ + +E +V ++ + R+ EL E ++ G+IYL +V +V L+AAFVD Sbjct: 6 NKQLLMNKT-GDEIQVALVEEGRLAELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDI 64 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G GFL F ++ D +AL+++ + T +D V E Sbjct: 65 GQKSDGFLHFSDVG-----TTTEDYRALIEDDDDDDTTGTDESDGDEIAAVLSQPAVLPE 119 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + + S + D ++ I +K +L Sbjct: 120 QNGKSSARSGAKRLTAPAQDGEDGG---------------RRQSYTQMIAGKLKPNDSIL 164 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 VQ++KE KG+ +T+ +++AGR+ VL+P +SR++ +R LK++ R + Sbjct: 165 VQVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVIARKERSRLKKLVRSMLP 224 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 G G I+RT + + +K+D E L+ W + E ++V P L+++E +I +RD Sbjct: 225 D-GFGAIIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLQDAVPPQLIFKEDTIISSVLRD 283 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 D++EI+ + Y+E ++++ P + V Y+ P+F I ++S+ Sbjct: 284 SLNADVTEIVANSPVIYKETLNYIQWAAPEMEKNVTLYQGKLPLFEGYSIAKDVESIFSR 343 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 +V L S GY+II TEA+V IDVNSGR + E+ +L+TNLEAA EI RQLRLRD+ G Sbjct: 344 KVWLKSGGYIIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGG 403 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +IVVDFIDM ++KN + V ++ L+ DRA+ + +S+FG+++++R+RIR S+++ Sbjct: 404 IIVVDFIDMLDQKNAKKVYDSMRTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMG 463 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSDVVLYLLNQKRATI 539 C C G G ++++ + I R + +Y LQ + ++ V L + T Sbjct: 464 DQCPACGGTGVVQARFTTINQIERWLRKYALQNTMKLQQLDLYVSPTVAEPLQQSEMNTE 523 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 +++ + + + V L F + + Sbjct: 524 LKWFLQHLLFVRVKPDESLRSDDFRFYSRKNNKEITAE 561 >gi|153873708|ref|ZP_02002199.1| ribonuclease G and E [Beggiatoa sp. PS] gi|152069827|gb|EDN67802.1| ribonuclease G and E [Beggiatoa sp. PS] Length = 518 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 137/565 (24%), Positives = 245/565 (43%), Gaps = 51/565 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ + ++E+ E K+ + NIY +V RV P +QAAFV+ Sbjct: 1 MSEEVLINVT-SRETRVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +I + + + + + G + Sbjct: 60 IGLERAAFLHLSDI--------------INTHLQAGIEPANQIDELLHEGKTLLVQVIKD 105 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S N+ + ++ + Sbjct: 106 PLGTKGARLTAQISIPSRYVVLLPYSPNMIGISTRIESPEERQRLK-------------- 151 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + +M + S +E Sbjct: 152 ----DIALQHTGMVEQDKLTETKDNNETVMMHAVSSPKTS------------------VE 189 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G ILRT + + D ++L RLW +++E LVY + +L+ R IR Sbjct: 190 SGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCSLVYRDLSLVLRTIR 249 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL I +I + + + +F K +P + Y P+F I+ +++ + Sbjct: 250 DLSGSSIDKIKIDSRDTHHQVVNFAKKFIPDLVPHIEHYTGERPLFDLYSIDDEINKALE 309 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+QTEA+ +IDVN+G +E+T +TNLEAA+ IARQLRLR+L Sbjct: 310 PKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFRTNLEAAQAIARQLRLRNLG 369 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+++++ R V + L++ L++DR + + IS GL+EM+R+R R S+ + Sbjct: 370 GIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQLGLVEMTRKRTRESLEHTL 429 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C+G G I++ +V I R + + Q+ +V +V +L + +++ Sbjct: 430 CRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLVLASQKIVDTMLEDESNSVL 489 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G SI + + +L+ I Sbjct: 490 ELEESIGCSIRFQVETSYSQELYDI 514 >gi|254460829|ref|ZP_05074245.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium HTCC2083] gi|206677418|gb|EDZ41905.1| ribonuclease, Rne/Rng family protein [Rhodobacteraceae bacterium HTCC2083] Length = 909 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 270/629 (42%), Positives = 372/629 (59%), Gaps = 5/629 (0%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + ++ S + E + DV + E + + + ++ Sbjct: 178 ETPVETSVADEAVEETAPEVDADADVPAEEVAAAESDDDEVEDDHARKAKKATQRDENIE 237 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 S +D K R+Y IQEV+K RQILLVQ+VKEERGNKGAA+TTYLSLAGRY Sbjct: 238 SVADDDDVEDIRPPRKPRPRRYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLSLAGRY 297 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 VLMPNT++G ISRKITN VDRK LKEIA +EVP G G+I+RTAGA RTK EIKRD+E Sbjct: 298 CVLMPNTARGGGISRKITNAVDRKKLKEIANEIEVPQGAGLIVRTAGAKRTKTEIKRDYE 357 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YL RLW+ +REL L S+AP +YEEG+LIKR+IRDLY +DI E+ V GE+GYR AKDFMK Sbjct: 358 YLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDIDEVFVEGERGYRTAKDFMK 417 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 ++MPS+A+ V+ Y +P P+F R +E L + V L S GY++I+ TEALV++DVNS Sbjct: 418 MIMPSHAKNVKLYTEPMPLFARYQVESYLSGMFNPTVQLKSGGYIVIDTTEALVAVDVNS 477 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 GR+T+E IEDTA +TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ Sbjct: 478 GRATKEGSIEDTATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDK 537 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 LK DRAR+QVG IS FGL+EMSRQR+R ++E+TT C C G G IRS ++AL+ILR Sbjct: 538 LKSDRARIQVGRISGFGLMEMSRQRLRPGMIEATTAPCPSCHGTGLIRSDDNMALNILRQ 597 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 +EE ++ + ++V + YL+NQKR I + E R+G+S+ + + F +E Sbjct: 598 IEEEGVRRRSREVLVRCPIAICNYLMNQKREHIAQIELRYGLSVRIEGDPHMVSPDFALE 657 Query: 567 KGSPVQALVNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 K +V S D+++ V +DEAL + E + + Sbjct: 658 KFKTATRIVPEPTAHVVSVDTSIMDQVDEDVSDVEEDEALAAVETQEHDGEDKPKKRRRR 717 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +K + + V ++ S + D + D P + + E Sbjct: 718 RRRGGKKNNSGGTDVQQGEQGEEGAVAAETSETPSEGDANGDAAPAPVEDAPNADAEASE 777 Query: 684 --HGFTENYDVSIPPVSTPEMESSNSSSD 710 + + P V + + S +D Sbjct: 778 KPKRVRRSRSRAKPKVEEVDAVAETSEAD 806 Score = 200 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 75/141 (53%), Positives = 93/141 (65%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E ++ S Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAESLRLRDEEQDKPKPRRRRRSSA 120 Query: 121 EEVAPIANFSQETEEESIISA 141 + ++ + ++E Sbjct: 121 KAAEASSDDAVVSKEIESPED 141 >gi|291278456|ref|YP_003495291.1| ribonuclease E and G [Deferribacter desulfuricans SSM1] gi|290753158|dbj|BAI79535.1| ribonuclease E and G [Deferribacter desulfuricans SSM1] Length = 507 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 180/565 (31%), Positives = 299/565 (52%), Gaps = 64/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++I+++ ETRV +L + V E+ E KK + GNIY K+ +V P +Q+AFVD Sbjct: 1 MSKEIIINSTV-NETRVAILENGSVSEIYIERHKKKGVAGNIYKGKIVKVLPGMQSAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G D+ A L Sbjct: 60 IGL---------------------DKAAFL------------------------------ 68 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +A+ + E E ++ + D N ++ + K+ I+++I+ Q + Sbjct: 69 ----HVADLTTENINEDMLVQSIDEEQNDKEQEDE------FNGKQHIPIEDMIQEGQEI 118 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ KE G KGA +TT+L++ GRY VLMP + +SRKI N +R+ LK I ++ Sbjct: 119 VVQVAKEPIGQKGARLTTHLTIPGRYLVLMPYYNHIG-VSRKIENEEERERLKGILTEIK 177 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G+I RT TK +++ D +YL+R+W+ + E + AP L+Y++ L+ R +R Sbjct: 178 PE-NFGLIARTVSEGSTKEDLESDLDYLLRIWNKLSEKMDGANAPQLIYKDLELLYRTLR 236 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ DIS+II+ + + K F + P+ ++ YE+ PIF IE++++ + Sbjct: 237 DITTNDISKIIIDNRSDFLKLKTFQREYFPNLDIEIKLYENSIPIFDYYNIEIEINRMFD 296 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++I+Q EAL IDVN+G+ + E+T L+TNLEAA+EIA QL+LR++ Sbjct: 297 RVVWLKSGGYIVIDQAEALTVIDVNTGKYVGKRNFEETILKTNLEAAKEIAYQLKLRNIG 356 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDME+ ++ V + L + KKDR +V V IS GL E++R+R++ S+ ++ Sbjct: 357 GIIIVDFIDMEKDEHIEKVLQTLNQEFKKDRGKVTVVNISPLGLFEITRKRVKESITKAL 416 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C YC+G G+I+S+ +V ILR + Y I V HS VV Y+LN ++ + Sbjct: 417 SENCPYCEGRGFIKSKVTVCYDILREIRRIAPFYEKKKIFVEAHSSVVDYMLNDEKECLD 476 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E + ++I V + + + Sbjct: 477 EIELMYNINIEVKANNNFHIEYYEV 501 >gi|218781948|ref|YP_002433266.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01] gi|218763332|gb|ACL05798.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01] Length = 529 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 179/565 (31%), Positives = 291/565 (51%), Gaps = 48/565 (8%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K++I+ ETRV ++ D + EL E + I NIY +V RV P +QAAFVD Sbjct: 1 MEKKLIIN-DAGFETRVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ F+ ++ D+ S Sbjct: 60 IGLDQAAFIYVDDVVMDF---------------------------------------PSD 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E +P+ + +E +E ++ A +D E + P + I+++I+ Q + Sbjct: 81 ETGSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPPRIRPS------IEDMIREGQEI 134 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ K G KGA VT+ +++ GR+ VLMP T+ +SR+IT+ +R LKE Sbjct: 135 MVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHIG-VSRRITDSGERNRLKEQLMEAR 193 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 V G I+RT ++ + E+L R+W V AP L+++E + R++R Sbjct: 194 VEP-FGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSAPSLLHQELSASLRSVR 252 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ K++ +++ E+GYRE +DF++ MP V+ Y+ PIF +E + L + Sbjct: 253 DLFTKEVDRLVIDSERGYREIQDFLEPNMPGLRDAVQYYDRREPIFDAYQLEGDISRLGR 312 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I +TEALVSIDVN+GR + + +T L+TNLEA +EIA QLRLRD+ Sbjct: 313 KKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTNLEALKEIAYQLRLRDIG 372 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV+DFIDME+ ++ V + L E+LKKDR+ V +S GL++M+R+R R ++ Sbjct: 373 GIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMGLIQMTRKRTRENINRQL 432 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C YC+G G + S+ S+ +I R + I V H ++ +LL ++ T++ Sbjct: 433 SEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKAHPEIARFLLEEENITVL 492 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E R I + L + F I Sbjct: 493 SLEQRIETPILIQADPALHIERFEI 517 >gi|78189942|ref|YP_380280.1| ribonuclease E and G [Chlorobium chlorochromatii CaD3] gi|78172141|gb|ABB29237.1| Ribonuclease E and G [Chlorobium chlorochromatii CaD3] Length = 568 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 159/578 (27%), Positives = 289/578 (50%), Gaps = 21/578 (3%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++L++ + +E +V ++ + R+ EL E ++ G+IYL +V +V L+AAFVD Sbjct: 6 TKQLLMNKT-GDEIQVALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDI 64 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G GFL F ++ D +AL+++ + + Sbjct: 65 GQKSDGFLHFSDVG-----TTNEDYRALIEDDDDDDAIIGDDIESDEAT----------- 108 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + F + ++ E+ +SA V + + K I +K +L Sbjct: 109 -GQNDSEFDEASDGETTVSAPKTVARSNSKKPSSGEQSGEKPQTYTQMIAGKLKPNDSIL 167 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 VQ++KE +KG+ +T+ +++AGR+ VL+P +SR++ + +R LK++ R + Sbjct: 168 VQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERSRLKKLVRSILP 227 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 G G I+RT + + +K+D E L+ W + E ++ P L+++E +I +RD Sbjct: 228 E-GFGAIIRTVAEDQEEALLKQDLEKLLTKWKQIEEKLQDATPPQLIFKEDTIISSVLRD 286 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 D+SEI+ + Y+E ++++ P + V Y+ P+F I ++S+ Sbjct: 287 SLTSDVSEIVANSPAIYKETLNYIEWAAPEMVKNVALYQGKLPLFEGYAIAKDVESIFSR 346 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 +V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEAA E+ RQLRLRD+ G Sbjct: 347 KVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGG 406 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +IVVDFIDM + KN + + +K L+ DRA+ + +S+FGL++++R+RIR S+++ Sbjct: 407 IIVVDFIDMLDPKNAKKIYDAVKTELRNDRAKSNILPMSDFGLMQITRERIRPSLMQRMG 466 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSDVVLYLLNQKRATI 539 C C G G ++++ + I R + +Y LQ+ + ++ V+ L N T Sbjct: 467 DQCPACGGTGIVQARFTTINQIERWLRKYALQHPLRFQQLDLYVSPTVLEPLQNSDMKTE 526 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 +++ + + + V L F + + Sbjct: 527 MKWFLQHMLFVTVKGDESLRSDDFRFYNRKNNKDITAE 564 >gi|291288274|ref|YP_003505090.1| ribonuclease, Rne/Rng family [Denitrovibrio acetiphilus DSM 12809] gi|290885434|gb|ADD69134.1| ribonuclease, Rne/Rng family [Denitrovibrio acetiphilus DSM 12809] Length = 507 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 169/566 (29%), Positives = 299/566 (52%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++++++ E RV +L + E+ E H K + GNIY +V +V P +Q+AFVD Sbjct: 1 MSKEIIVNSTL-NEVRVAILENGNPAEIYVERAHSKNVAGNIYKGRVIKVLPGIQSAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FLP +++ V +G+ ++++ Sbjct: 60 VGLPKAAFLPAADVY-------------------------------VENGERVSFLENNI 88 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + Q TE+E I++++K Q + Sbjct: 89 DSERTVTDIDQMTEDEQKNI---------------------------PPIEDMLKEGQEI 121 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ KE G KGA +TT+L++ GRY VLMP +SRKI + +R L+++ + ++ Sbjct: 122 VVQVAKEAIGQKGARLTTHLTVPGRYIVLMPGYEHVG-VSRKIEDEQERDRLRDVLKAIK 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P MG+I RT A + E++ D +YL RLW +++ ++ +P L+YE+ L+ R +R Sbjct: 181 SP-NMGLIARTVTAGHDEEELRADVDYLSRLWSKIKDK-MSGKSPCLIYEDHGLVFRILR 238 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D D+S I++ + + + K F++ +P V + + PIF IE+++ + Sbjct: 239 DAATSDVSRIVIDNKAEFLKIKSFLREFLPDMNMEVSLFTNDIPIFDYYNIEIEIGRILD 298 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+Q EAL +DVN+G+ + EDT L+TNLEA++EIA QL+LR++ Sbjct: 299 KKVWLKSGGYIIIDQAEALTVVDVNTGKFVGKRNFEDTILKTNLEASKEIAWQLKLRNIG 358 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDM +++N + V K L+ +K DRA+ V IS GL+E++R+R++ S+ Sbjct: 359 GIIIVDFIDMAKEENQQKVMKALEHEMKSDRAKASVVNISPLGLVEITRKRVQESLSRVL 418 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C YC+G G ++S+ ++ ILR V + I++ H DVV +L+ ++ ++ Sbjct: 419 SEACPYCEGRGLVKSKLTICYDILREVRRIAPFFRNRRIVIEAHPDVVDIILDDEKGSLG 478 Query: 541 EYEARFGVSINVVIGIELADKLFYIE 566 E E V++ V L + + Sbjct: 479 EIELMMSVNVEVNANHTLHIHDYEVT 504 >gi|158520115|ref|YP_001527985.1| ribonuclease [Desulfococcus oleovorans Hxd3] gi|158508941|gb|ABW65908.1| ribonuclease, Rne/Rng family [Desulfococcus oleovorans Hxd3] Length = 517 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 171/568 (30%), Positives = 273/568 (48%), Gaps = 56/568 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++I+A+ ETRV +L D + E E + I GNIY A+V RV P +QAAFVD Sbjct: 5 MSKELIINATE-NETRVALLEDGILAEFFMERGNHLNISGNIYKARVNRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ F+ ++ +V + + Sbjct: 64 IGLDQAAFIYVTDVFS------------------------------EPSREVENIFNETA 93 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE P+A ++ + S+ DV I++++ Q + Sbjct: 94 EEPEPVAVAREDEFDLSVPVPPADVK-----------------------IEDLLSEGQEI 130 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ K G+KGA +TT +SL GR+ VLMP R + + ++ LKE+ L Sbjct: 131 LVQVSKSPIGSKGARITTRISLPGRFLVLMPTVDHVGVSKRIVEDGERQR-LKELVVSLR 189 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G I+RTA K +++++ L+ LW V++ ++ AP L++ + + RA+R Sbjct: 190 TEP-FGFIVRTAAEGVEKEKLEKEMILLVNLWQKVQKRFASASAPALLHRDMTVSLRAVR 248 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + ++V + Y E F+ +MP V +Y PIF IE + + Sbjct: 249 DYLTHEADRVVVDADYVYDEIMTFLDEIMPRMKASVERYTGSEPIFDAYNIEGDVFRSLK 308 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II TEALV IDVN+G +H E+T +TNLEAA EIA Q+RLR+L Sbjct: 309 KKVWLKSGGYIIIEPTEALVVIDVNTGGYVGKHNFEETVFKTNLEAAREIAYQIRLRNLG 368 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM + N V LKE L+KD+++ + S GL++M+R+R R+SV Sbjct: 369 GIIIIDFIDMAREANREKVFVSLKEFLEKDKSKTTLLPFSELGLIQMTRKRTRNSVARML 428 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC G GY+ S+ ++ +I R + + I V H D+ L ++ + Sbjct: 429 CEPCFYCNGDGYLLSRQTICFNIYREIMRESQDLSGEKITVKVHPDIAEMLHGEESRVVT 488 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKG 568 EA G I + + + F IE+ Sbjct: 489 GLEADLGRQIIIYPVPKFHIEQFEIEEI 516 >gi|193215063|ref|YP_001996262.1| ribonuclease, Rne/Rng family [Chloroherpeton thalassium ATCC 35110] gi|193088540|gb|ACF13815.1| ribonuclease, Rne/Rng family [Chloroherpeton thalassium ATCC 35110] Length = 582 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 171/567 (30%), Positives = 293/567 (51%), Gaps = 12/567 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L++ S +E +V ++ D R+ E+ E + G+IYL +V +V LQAAF+D G Sbjct: 6 KQLLMNKS-GDEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDIG 64 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE- 121 + GFL F ++ D +ALL E D ++ D + D D Sbjct: 65 HSSDGFLHFSDVG-----TTNEDYRALLGEDTDDDDDDDSDTDTDSDSDSDSDTDADASS 119 Query: 122 --EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 E P + + ++ S +D + + + E ++ I +K Sbjct: 120 DDESNPPSQEATKSSSRSRGRRGHDNNTQNASGEDAAGEKRNRRMSYTQMIASKLKPNDS 179 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 +LVQ++KE NKGA +T+ +++AGR+ VL+P S IS++I N +R+ LK I R + Sbjct: 180 ILVQVIKEPISNKGARLTSDITIAGRFMVLLPFGSGHLAISKRIVNRRERRRLKGIVRSI 239 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 G G I+RT + ++ +K D E L+ W + E ++ P L+++E +I + Sbjct: 240 LPK-GFGAIVRTVAEEQDELLLKTDLEKLLAKWKQIEETVKDAKPPKLIFKEDTMISSVL 298 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD +D++E++ + + Y+E F++ P + V Y+ P+F GI ++S+ Sbjct: 299 RDSLTEDVTELVTNSQHIYKETLTFVRWAAPEMEKRVSHYKGKLPLFESYGIAKDVESIF 358 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 +V L S GY+II TEA+V IDVNSGR + E+ +L+TNLEAA+EI+RQLRLRD+ Sbjct: 359 SRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAKEISRQLRLRDI 418 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFID+ ++KN R V +K ++DRA+ + +S FGL++++R+RIR S+++ Sbjct: 419 GGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAKSNILPMSEFGLMQITRERIRPSLMQR 478 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRA 537 C C G+G ++++ + I R + +Y L + ++ V L Sbjct: 479 MGDECPACGGSGVVQARHTTIHQINRWLRKYALNGNHAFERLDLYVSQTVAQPLFQDAMN 538 Query: 538 TIVEYEARFGVSINVVIGIELADKLFY 564 ++ + + +NV L F Sbjct: 539 PQWKWFLQHLLFVNVKTDDSLRSDDFR 565 >gi|84500980|ref|ZP_00999215.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis HTCC2597] gi|84391047|gb|EAQ03465.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis HTCC2597] Length = 920 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 271/626 (43%), Positives = 365/626 (58%), Gaps = 13/626 (2%) Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160 E + P D + + A+ + ++++ S +D V Sbjct: 166 EPSDETGADAADAAPADETGPDEDDEADNGGRDAVRDASAHDDEIESVADDDDQEDIRPV 225 Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 K +R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G IS Sbjct: 226 RKPRQRRYKIQEVIKIRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGIS 285 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 RKITN DRK LKEIA ++VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L Sbjct: 286 RKITNAADRKKLKEIANEIDVPTGAGLIVRTAGAKRTKTEIKRDYEYLQRLWEQIRELTL 345 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 S+AP +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ V+ Y Sbjct: 346 KSIAPARIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRNAKDFMKMIMPSHAKNVKHYA 405 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 D P+F R +E L + V L S GY++I TEALV+IDVNSGR+T+E IE+TA Sbjct: 406 DQMPLFARYQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETAT 465 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 +TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+LK+ LK DRAR+QVG IS Sbjct: 466 KTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNNAVEKRLKDKLKTDRARIQVGRIS 525 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 FGLLEMSRQR+R +LE+TT+ C C G G IRS S+AL+ILR +EE ++ + ++ Sbjct: 526 GFGLLEMSRQRLRPGMLEATTQPCPSCHGTGLIRSDDSMALNILRQIEEEGVRRRSREVL 585 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 V + YL+NQKR + EAR+G+S+ + L F +EK V Sbjct: 586 VKCPVGIANYLMNQKREHVAAVEARYGLSVRIEGEPHLVSPDFSLEKFKTATRHVPEPSS 645 Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 V S + + + +ES + +D + R+R Sbjct: 646 VISADAMLMDQIDDQIEETPDEDELPETAESTPESEDQKPKKRRRRRRRRRGGGNGENGG 705 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY---------- 690 A + D G D S ++ D + A +E Sbjct: 706 ADNGSDNGSGDDQLSGESGDDQKEAPAQPEKAAEGEEPTASDAAEASEEKPKKRTRSRSR 765 Query: 691 ---DVSIPPVSTPEMESSNSSSDPIV 713 P ++S++ + P Sbjct: 766 SRKKAEEPAAEETPADASSAPAQPAP 791 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 91/152 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP +DR+AL++E A + + Sbjct: 61 RHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEGEEEKKKPRSRRRKSSKAE 120 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGS 156 + S + + + + D + Sbjct: 121 QAERIDSDDAVVSSDAEISGMETIDLDDENEG 152 >gi|281357353|ref|ZP_06243842.1| ribonuclease, Rne/Rng family [Victivallis vadensis ATCC BAA-548] gi|281316384|gb|EFB00409.1| ribonuclease, Rne/Rng family [Victivallis vadensis ATCC BAA-548] Length = 544 Score = 345 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 176/578 (30%), Positives = 271/578 (46%), Gaps = 41/578 (7%) Query: 1 MAN--KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M K +I E R +L + R+EE E + + G+IYL K+ +EPSLQAAF Sbjct: 1 MDKTGKQIILNCEKLERRFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAF 60 Query: 59 VDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 VD G ++ FL + E+ +P D E + + + G+ Sbjct: 61 VDIGAEKNAFLHYHEM------LPGCD------ELLGRRDSDDDDDEKTVSGN------- 101 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 E+ I + + K KK I + K Sbjct: 102 ----------------EQPIQAKRQKRQEAKPNSKVNQEALRRKKKLTVADIPNIFKPGM 145 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 +LVQ+VK KGA VTT +S+AGRY VLMP + +R + L++I Sbjct: 146 EILVQVVKSPISTKGARVTTDISIAGRYLVLMPYSEHIGLSTRIEGGQERDR-LRKILAA 204 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 LE+P GMG+I RT G R KRD + L+ W + + AP L+Y E NL++R Sbjct: 205 LELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWRKIEKGMDTRNAPALLYTEPNLVERT 264 Query: 299 IRDLYCKDIS-EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRD ++ ++ + + + + A V Y P+F I QL Sbjct: 265 IRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKMAEKVTLYNSGKPVFEAYRINDQLRE 324 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 + Q EV LP G +++++TEAL++IDVNSGR + + L+TNLEAAEEIARQLRLR Sbjct: 325 VFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKGADQPEFILKTNLEAAEEIARQLRLR 384 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 ++ GL+V+DFIDM ++ V + +K +K DRA+ +V +S GL+EM+RQR S+ Sbjct: 385 NIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRAKTKVLPLSRLGLMEMTRQREHESIK 444 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL--QYTAHNIIVHTHSDVVLYLLNQK 535 + C YC G+G ++S S+++ I R + L +Y + V H D++ L N+ Sbjct: 445 DQVFMPCPYCHGSGRVKSVVSMSVEIQRRLNTVLRESRYRNRPVRVIMHPDILQRLRNED 504 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + E E ++ ++ L + F + Sbjct: 505 ALLLRELEEKYKHDLSFRADPMLHSEEFKLVDPDTGDE 542 >gi|194335205|ref|YP_002016999.1| ribonuclease, Rne/Rng family [Pelodictyon phaeoclathratiforme BU-1] gi|194307682|gb|ACF42382.1| ribonuclease, Rne/Rng family [Pelodictyon phaeoclathratiforme BU-1] Length = 562 Score = 345 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 158/565 (27%), Positives = 286/565 (50%), Gaps = 27/565 (4%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++L++ + +E +V ++ + R+ EL E ++ G+IYL +V +V L+AAFVD Sbjct: 6 NKQLLMNKT-GDEIQVALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDI 64 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G GFL F ++ D +AL+++ + + DD G Sbjct: 65 GQKSDGFLHFSDVG-----TTNEDYRALIEDDDDDENGGVDDGDDAPQG----ARSGDEP 115 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + + ++ + + D + I +K +L Sbjct: 116 AAGANVKSAARSGSKAPSADDQDRAEK--------------RQSYTQMIAGKLKPNDSIL 161 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 VQ++KE +KG+ +T+ +++AGR+ VL+P +SR++ +R LK++ R + Sbjct: 162 VQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVARKERSRLKKLVRSMLP 221 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 G G I+RT + + +K+D E L+ W + E ++ P L+++E +I +RD Sbjct: 222 E-GFGAIIRTVAEDQEETLLKQDLEKLLAKWTQIEEKLQDAAPPQLIFKEDTIISSVLRD 280 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 D++EI+ + + Y+E ++++ P + V Y+ P+F GI ++S+ Sbjct: 281 SLTSDVTEIVANSQLIYKETLNYIQWAAPEMVKNVTFYQGKLPLFEGYGIAKDVESIFSR 340 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 +V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEAA E+ RQLRLRD+ G Sbjct: 341 KVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGG 400 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +IVVDFIDM ++KN + V +K L+ DRA+ + +S+FG+++++R+RIR S+++ Sbjct: 401 IIVVDFIDMLDQKNAKKVYDSMKTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMG 460 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRATI 539 C C G G ++++ + I R + +Y LQ+ + ++ VV L N T Sbjct: 461 DQCPACGGTGVVQARFTTINQIERWLRKYALQHNMKFQQLDLYVSPTVVEPLQNSDMKTE 520 Query: 540 VEYEARFGVSINVVIGIELADKLFY 564 +++ + + + V L F Sbjct: 521 LKWFLQHMLFVQVKPDESLRSDDFR 545 >gi|194332872|ref|YP_002014732.1| ribonuclease, Rne/Rng family [Prosthecochloris aestuarii DSM 271] gi|194310690|gb|ACF45085.1| ribonuclease, Rne/Rng family [Prosthecochloris aestuarii DSM 271] Length = 551 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 162/577 (28%), Positives = 291/577 (50%), Gaps = 38/577 (6%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L++ S +E +V ++ D R+ EL E + G+IYL +V +V L+AAFVD G Sbjct: 7 KQLLMNKS-GDEIQVALVEDGRLAELVIERPDSLRSIGDIYLGRVHKVVEGLKAAFVDIG 65 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 GFL F ++ D +AL+++ + + D + DV + E Sbjct: 66 QKSDGFLHFSDVG-----TTNEDYRALIEDDEDDENGALEGEDVEKNDDVQAESKPRASE 120 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 AP + K+ I +K +LV Sbjct: 121 KAPRSAT-----------------------------PERKRQSYTQMIAGKLKANDSILV 151 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q++KE NKG+ +T+ +++AGR+ VL+P +SR++ + +R LK++ R + Sbjct: 152 QVIKEPISNKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERSRLKKLVRSILPE 211 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G G I+RT ++ + +K+D E L+ W + E ++ P L+++E +I +RD Sbjct: 212 -GFGAIIRTVAENQEEELLKKDLEKLLVKWQQIEEKLQDAKPPQLIFKEDTIISSVLRDS 270 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 D++E++ + Y+E +++ P + V Y+ P+F GI ++S+ + Sbjct: 271 LNSDVTELVANCPSIYKETLNYILWAAPEMEKNVTLYQGKLPLFEGYGIAKDVESIFSRK 330 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEAA E+ RQLRLRD+ G+ Sbjct: 331 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKKEQEENSLKTNLEAAREVVRQLRLRDIGGI 390 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM ++KN++ V +K L+ DRA+ + +S+FGL++++R+RIR S+++ Sbjct: 391 IVVDFIDMLDQKNSKKVFDSMKTELRHDRAKSNILPLSDFGLMQITRERIRPSLMQRMGD 450 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540 C C G+G ++++ + I R + +Y LQ + ++ V L +++R T + Sbjct: 451 QCPACGGSGVVQARYTTINQIERWLRKYALQRKVMFQKLDLYVSPTVAEPLCDEERKTEM 510 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 ++ + + + + L F + + + Sbjct: 511 KWFLQHMLFVKIKSDESLRSDDFRFYLQKNNKEITSE 547 >gi|85702983|ref|ZP_01034087.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217] gi|85671911|gb|EAQ26768.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217] Length = 918 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 274/636 (43%), Positives = 373/636 (58%), Gaps = 5/636 (0%) Query: 90 LKESNIAQTDSEAVA--DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147 L++ E + + V V P D + ET+ + ++++ S Sbjct: 167 LEDEAATAAVPEGTSPMERVPETPVEEPEDRPAPTSQEAGDEEPETDTRDHAAQDDEIES 226 Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 E+ V K R+Y IQEV+K RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY Sbjct: 227 VAEEDDSEDIRPVRKPRARRYKIQEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYC 286 Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267 VLMPNT++G ISRKITN VDRK LKEIA ++VP G G+I+RTAGA RTK EIKRD+EY Sbjct: 287 VLMPNTARGGGISRKITNAVDRKKLKEIATEIDVPRGAGLIVRTAGAKRTKAEIKRDYEY 346 Query: 268 LMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327 L RLW+ +REL L S+AP +YEEG+LIKR+IRDLY +DI E++V GE+GYR AKDFMK+ Sbjct: 347 LQRLWEQIRELTLRSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVEGERGYRIAKDFMKM 406 Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 +MPS+A+ V+ Y D P+F R +E L + V L S GY++I TEALV+IDVNSG Sbjct: 407 IMPSHAKNVKHYVDQQPLFARFQVESYLSGMFNPTVQLKSGGYIVIGVTEALVAIDVNSG 466 Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 R+T+E IE+TAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+E++NN SVEK+LK+ L Sbjct: 467 RATKEGSIEETALKTNIEAAEEVARQLRLRDLAGLIVIDFIDMDERRNNASVEKRLKDKL 526 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 K DRAR+QVG IS FGLLEMSRQR+R ++E+TT+ C C G G IRS S+ALSILR + Sbjct: 527 KTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPACHGTGLIRSDDSLALSILRQI 586 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 EE ++ + ++V + YL+NQKR + + E R+G+S+ + L F +EK Sbjct: 587 EEEGVRRRSREVLVKCPVGIANYLMNQKRDHVAQIEGRYGLSVRIEGDPRLVSPDFTMEK 646 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 V S + + +I+ + E + + + E+ G Sbjct: 647 FKTATRNVPEVPMAQFVSGSSALMDDIDDDTEIEEDIEDEDEADTDKSDEGKTPSETGGD 706 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + + R + S D + D + + Sbjct: 707 GSDKPK---KSRRRRSRRRKPKGGNGSDRNGDGGDDGADDGKDDDEDVASDATDTQTETP 763 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + T S+ +S+ K R RK Sbjct: 764 ETVTTAPAEAQTDAETQSDDASEEKPKPKRTRAPRK 799 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 114/237 (48%), Gaps = 2/237 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 6 MATKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 65 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL+ E +D + ++ + Sbjct: 66 YGGNRHGFLAFSEIHPDYYQIPVADREALMAEEEALANAQNDEDEDRPRRNSGGGDNRND 125 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 S+ S V + E + + + + Sbjct: 126 NRNGNGNGRSRSRSRSRSRSEKTQSDDAVTTSEISGMETIDLEDEAATAAVPEGTSPMER 185 Query: 181 LVQIVKEERGNKGAAVTTY--LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + + EE ++ A + + + + D + +++ Sbjct: 186 VPETPVEEPEDRPAPTSQEAGDEEPETDTRDHAAQDDEIESVAEEDDSEDIRPVRKP 242 >gi|313673337|ref|YP_004051448.1| rnase g [Calditerrivibrio nitroreducens DSM 19672] gi|312940093|gb|ADR19285.1| RNAse G [Calditerrivibrio nitroreducens DSM 19672] Length = 505 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 175/571 (30%), Positives = 287/571 (50%), Gaps = 66/571 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +++I+++ ETRV VL +N + E+ E K I GNIY KV +V P +Q+A Sbjct: 1 MAREIIINST-PNETRVAVLENNSLSEIFLERAKNKGIAGNIYKGKVVKVLPGMQSA--- 56 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I D + Sbjct: 57 ----------FIDIG-------------------------------HERAAFLHAGDLYI 75 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ + E + N V I+++I+ Q + Sbjct: 76 DDSENFSLLEDRIAEVEDLDLENGNKVYVP-------------------IEDLIQEGQEI 116 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+ KE G KGA +TT++++ GRY VLMP+ + ISRKI + +R+ LK I ++ Sbjct: 117 IVQVAKEPIGQKGARLTTHITIPGRYLVLMPSYNHVG-ISRKIEDDGERERLKNILLNIK 175 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +G+I RT + ++ ++K D YL++ W+ V + AP L+YEE +L+ R +R Sbjct: 176 PA-NVGLIARTVCENSSEEDLKADLNYLLKTWEKVSAKSKEPGAPKLIYEELDLLFRTVR 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL ++ +IIV + Y K F+K + + + YE+ PIF IE+++ L + Sbjct: 235 DLANDEVRKIIVDTKADYLRIKSFVKEYLSNNHISIELYENDMPIFDYYNIEIEISRLLE 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++I+QTEAL IDVN+G+ + ++T L+TN+EAA+EIA Q+RLR+L Sbjct: 295 RRVWLKSGGYIVIDQTEALTVIDVNTGKFVGKRNFDETILKTNIEAAKEIAWQMRLRNLG 354 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDME++++ V + L + +KKDRA+ V IS GL E++R+R++ S+ + Sbjct: 355 GIIIVDFIDMEKEEHREKVLQTLLQEMKKDRAKASVVNISPLGLFEITRKRVQDSLNKML 414 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T+ C YC G G ++S+ ++ ILR + +T I V H DV +LN +R I Sbjct: 415 TEPCPYCDGRGVVKSKLTICYDILREIRRIAPYFTNRKIFVEAHPDVADIILNNERENID 474 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + E F +SI + + + + Sbjct: 475 DIEMMFQLSIEIKPNSRYHIEHYEVIPLEKA 505 >gi|328953935|ref|YP_004371269.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109] gi|328454259|gb|AEB10088.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109] Length = 503 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 163/565 (28%), Positives = 274/565 (48%), Gaps = 64/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA++++I+ S E+RV ++ + V EL E + + GNIY +V +V P + A Sbjct: 1 MASELIINVS-PFESRVALIENGNVVELYIERDSASSLIGNIYKGRVIKVLPGMGA---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I + D Sbjct: 56 ---------AFVDIG-------------------------------LERSAFLYVADVVD 75 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + ++ + +S + I+++++ Q + Sbjct: 76 HYDDFYAEWHKDDRNGNQVSLA-----------------PHFTETQTIPIEDMLQEGQEV 118 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ K KGA +T++++L GR+ VLMP + +SR+I + +R LK+ ++ Sbjct: 119 LVQVAKPPLCGKGARLTSHITLPGRHLVLMPTVNHVG-VSRRIADEAERARLKDALLAIK 177 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G+I RTA +++ + E+L+++W+N+ + L++ E +++ R +R Sbjct: 178 PP-DCGLIARTASEGVEGDKLRSEIEFLLQIWNNILRKKETAPTASLLHRELDIVLRVVR 236 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ K++ +IV + + + F++ P V Y+ P+F IE++L Sbjct: 237 DLFTKEVDCLIVDDFETHAKIIQFVESFQPLMKFNVELYQSREPLFEHYDIEIELQRALG 296 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II TEALV IDVN+GR +H +E+T L+TNLEA +EIA QLRLR++ Sbjct: 297 KKVWLKSGGYIIIEPTEALVVIDVNTGRYVGKHNLEETILKTNLEAVKEIAYQLRLRNIG 356 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLIV+DFIDME++ N V LKE+LKKDRA+ V +S GL+EM+RQR R S+ Sbjct: 357 GLIVIDFIDMEKEANREKVYNVLKEALKKDRAKTSVLKMSELGLVEMTRQRSRQSLHHML 416 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T+ C YC G+IRS+ +VA +LR + + + + + H +V L++ ATI Sbjct: 417 TEPCPYCDQKGFIRSRLTVAFDMLRELTTMIGSLDSQQVTLEAHPEVAGVLMDLGGATIE 476 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E + I + + + I Sbjct: 477 SLEGEYHKKIVIRSNPHFHQEKYEI 501 >gi|95931016|ref|ZP_01313744.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684] gi|95132912|gb|EAT14583.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684] Length = 502 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 160/565 (28%), Positives = 272/565 (48%), Gaps = 66/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K++I+ + ETRV + + + EL E ++ I GNIY KV RV P +QA Sbjct: 1 MTKKLVINTT-SRETRVALQENGHIAELYIERCCERGIVGNIYKGKVIRVLPGMQA---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I + D Sbjct: 56 ---------AFVDIG-------------------------------LEKAGFLYVADVID 75 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E A + + + I+++++ Q + Sbjct: 76 EMDAVVDYVDGRSSSADPGDEGMEEKPL-------------------PPIEDLLQEGQEI 116 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L QI KE G KGA +T+++SL GR+ V MP ISR+I N +++ L+ + Sbjct: 117 LAQIAKEPLGTKGARITSHISLPGRHLVYMPTIDHIG-ISRRIENEEEKERLRTTVEEIR 175 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RTA +++ +++ D YL LW ++ ++ AP L++ + ++ + +R Sbjct: 176 PA-GSGYIVRTAAEGKSEEDLRADMLYLSELWKDIDSRQKDAEAPCLIHSDLDVTSKVLR 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ +DI I+V + Y + F+ MP + ++ P+F G+EV++ Sbjct: 235 DILTEDIRHIVVDSQSEYDKIVQFLGTYMPKQQYTIELHDKNEPLFDTYGLEVEIARALG 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL ++DVN+GR + +EDT L+TNLEA EIA QLRLR++ Sbjct: 295 RKVWLKSGGYIIIEQTEALTAVDVNTGRFVGKRNLEDTILKTNLEAVREIAYQLRLRNIG 354 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GLI++DFIDME++ + V L+E+LK D+++ + IS GL+EM+R+R+R S+ + Sbjct: 355 GLIIIDFIDMEKEAHREQVHSALEEALKSDKSKTNILKISELGLVEMTRKRVRESIGRTL 414 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GYI+S++++ I R ++ + + + + H DV L +++ + I Sbjct: 415 CEPCPYCEGTGYIKSRTTMVFEIFRKLKREMNDLPGYRVNLQVHPDVAALLYDEESSVID 474 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E + I ++ + F I Sbjct: 475 ELERHYQKQITIIARPNFHIEQFEI 499 >gi|126726396|ref|ZP_01742237.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium HTCC2150] gi|126704259|gb|EBA03351.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium HTCC2150] Length = 939 Score = 343 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 256/611 (41%), Positives = 354/611 (57%), Gaps = 4/611 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 E + A + ++ V + + + + + + + ++ S + Sbjct: 226 AEVSEAAPVEKTADKEIGGMGVIDLDGDDDQSNDEMVEGFAKDDGVTPADLDENIESVAD 285 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + K ++Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLM Sbjct: 286 EDVSEEIRTPRKPRPKRYRIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLM 345 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PNT++G ISRKITN DRK LKEIA +EVP G G+I+RTAGA RTK EIKRD+EYL R Sbjct: 346 PNTARGGGISRKITNAADRKKLKEIATEIEVPQGAGLIVRTAGAKRTKSEIKRDYEYLQR 405 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ +R L L S+AP +YEEGNLIKR+IRDLY DI E+ V GE GY AK+FMK+LMP Sbjct: 406 LWEEIRALTLKSIAPAKIYEEGNLIKRSIRDLYNGDIDEVFVEGENGYLVAKEFMKMLMP 465 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++A+ VR Y+D P+F R +E L + V L S GY++I TEALV+IDVNSGR+T Sbjct: 466 THAKNVRHYQDKMPLFARYQVESYLAGMFNPTVQLKSGGYIVIGITEALVAIDVNSGRAT 525 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E IE+TA++TNLEAAEE+ARQLRLRDLAGLIV+DFIDME+++NN +VEK++K+ LK D Sbjct: 526 KESSIEETAVKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEDRRNNAAVEKRIKDRLKTD 585 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGL+EMSRQR+R +LE+TT+ C C G G +RS S+AL I+R +EE Sbjct: 586 RARIQIGRISGFGLMEMSRQRLRPGMLEATTQPCPSCHGTGLVRSDDSLALLIIRQLEEE 645 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + ++V + +++N+KR I E R+G+SI + L F IE+ Sbjct: 646 GVKRKSKEVLVKAPIAIANFMMNEKREHIATIEGRYGLSIRIEADPFLISPDFTIERFKT 705 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 V +E D ++ SE+ E ++ ++ R+ Sbjct: 706 ATRNVVEVEAPVISIDTADLPDLVEKEITDAVVV----SETPEGVEGEGEAQPKKKRRRR 761 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 RRRR + + + +N +D + E Sbjct: 762 RRRRGGGNNNNENGNVDQNAEGQEAGENQNNDQAAEVNSSDAVATDETSAGDNEQTAEAN 821 Query: 691 DVSIPPVSTPE 701 + Sbjct: 822 QAETNGDDAEQ 832 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 82/168 (48%), Positives = 101/168 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 6 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESLNKRQLAGNIYLAKVTRVEPSLQAAFVD 65 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ALL + A+ Sbjct: 66 YGGNRHGFLAFSEIHPDYYQIPVADREALLADERAYAEALNEAAEAEEKKPNRRRRGRGK 125 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 +A+ S + + +D V++ E V P +K +R Sbjct: 126 PRPEAMASNSGDEDAVVSEEIVDDAVTDAEVVAEEKPVKRTRKPRRTK 173 >gi|110679532|ref|YP_682539.1| ribonuclease E, putative [Roseobacter denitrificans OCh 114] gi|109455648|gb|ABG31853.1| ribonuclease E, putative [Roseobacter denitrificans OCh 114] Length = 919 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 273/632 (43%), Positives = 368/632 (58%), Gaps = 12/632 (1%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 E+ S+ D + + + + + + S ++ + S + Sbjct: 178 AEAAQTADASDDQDAQAASEDASEDDTATEDGDDDDDDDDDAPRKSDASSKDDTIESVAD 237 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 D V K R+Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLM Sbjct: 238 DDDQDDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLM 297 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PNT++G ISRKITN DRK LKEIA +EVP G G+I+RTAGA RTK EIKRD+EYL R Sbjct: 298 PNTARGGGISRKITNAADRKKLKEIANEIEVPQGAGLIVRTAGAKRTKAEIKRDYEYLQR 357 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ +REL L SVAP +YEEG+LIKR+IRDLY ++I E+ V GE+GYR AKDFMK++MP Sbjct: 358 LWEQIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMP 417 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 S+A+ V+ Y + P+F R +E L S+ V LPS GY++I TEALV+IDVNSGR+T Sbjct: 418 SHAKNVKLYTEGLPLFARYQVESYLASMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRAT 477 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E IE TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDM+E+KNN SVEK++K+ LK D Sbjct: 478 KEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERKNNTSVEKRMKDKLKTD 537 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+QVG IS FGL+EMSRQR+R ++E+TT+ C C G G IRS S+ALSILR +EE Sbjct: 538 RARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCQACHGTGLIRSDDSLALSILRQIEEE 597 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + +++ + +L+NQKR I EAR+G+S+ + L F +EK Sbjct: 598 GTRKRSREVLIKAPVGIANFLMNQKREHIAHIEARYGLSVRIEGDPMLVSPDFSLEKFKT 657 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 +V+ + D V D+ P +++ + + + E+ G R Sbjct: 658 ATRVVSVAAQHVVSVDTSLMD----QVDADDDEAPAETADNGAETANKENNVENDGEDRP 713 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 + + Q D++ E E A E Sbjct: 714 K--------RRRRRRRRRNKNGNGETQTASDETNAEASEAQGAKTPKKAEPAADSPVEAP 765 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P E + + P ++R K + Sbjct: 766 AAQTDDAPAPAAEQEEAPAKPKRTRSRTRKPK 797 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 123/290 (42%), Gaps = 4/290 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++E +A D+ D S Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKAKEDE----DEKPKRRRSR 116 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + +D + +E + E+ +R Sbjct: 117 SRTKAKGEDTTSEDVVATKDVESDQIDGMETIDLDDSEEGSSPMERVAETPVEEPEGDDA 176 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + + A + + D + + + Sbjct: 177 SAEAAQTADASDDQDAQAASEDASEDDTATEDGDDDDDDDDDAPRKSDASSKDDTIESVA 236 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 I + +I+ + L V + + L Sbjct: 237 DDDDQDDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTY 286 Score = 40.7 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 39/147 (26%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 T + + + + A P+ + D +E+ Sbjct: 724 NKNGNGETQTASDETNAEASEAQGAKTPKKAEPAADSPVEAPAAQTDDAPAPAAEQEEAP 783 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + +R R R R+P + + + E ++ T A Sbjct: 784 AKPKRTRSRTRKPKVEADTQDAPEAEAKAETAAPVEETAPAEATEETPAKPKRKRASRAK 843 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVK 714 + V P + P + ++ P + Sbjct: 844 KAAPVEAAPDAEPAPVAQDAEPAPSSQ 870 >gi|78185904|ref|YP_373947.1| ribonuclease E and G [Chlorobium luteolum DSM 273] gi|78165806|gb|ABB22904.1| Ribonuclease E and G [Chlorobium luteolum DSM 273] Length = 570 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 159/564 (28%), Positives = 295/564 (52%), Gaps = 19/564 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L++ + +E +V ++ D R+ EL E ++ G+IYL +V +V L+AAFVD G Sbjct: 7 KQLLMNKT-GDEIQVALVEDGRLAELIIERPESRRSIGDIYLGRVHKVIEGLKAAFVDIG 65 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 GFL F ++ D +AL+++ + + D + EE Sbjct: 66 QKSDGFLHFSDVG-----TTTEDYRALIEDDDDDDETAADETGTAE--------DGADEE 112 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 AP+A + + ++ S S+ + + + + + + I +K +LV Sbjct: 113 EAPVAAGAPQEQQGSRQSSRSGGRKPQPQQRKEDGAEKRQSYTQ--LIAGKLKANDSILV 170 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q++KE KG+ +T+ +++AGR+ VL+P +SR++ + +R LK++ R + Sbjct: 171 QVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKLVRSMLPE 230 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G G I+RT + + +K+D E L+ W + E ++ P L+++E +I +RD Sbjct: 231 -GFGAIIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLKDAAPPQLIFKEDTIISSVLRDS 289 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 D++EI+ + ++E ++++ P + V Y+ P+F GI ++S+ + Sbjct: 290 LTSDVTEIVANSPSIHKETLNYIEWAAPEMVKNVSLYQGKLPLFEGYGIAKDVESIFSRK 349 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V L S GY+II TEA+V +DVNSGR + E+ +L+TN+EAA E+ RQLRLRD+ G+ Sbjct: 350 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLRTNMEAAREVVRQLRLRDIGGI 409 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM + +N++ V +K L+ DRA+ + +S+FG+++++R+RIR S+++ Sbjct: 410 IVVDFIDMMDARNSKKVYDSMKGELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMGD 469 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSDVVLYLLNQKRATIV 540 C C G+G ++++ + I R + +Y LQ+ + ++ V L N T + Sbjct: 470 QCPACGGSGVVQARFTTINQIERWLRKYALQHAMKFQQLDLYVSPTVAEPLKNSDMNTEL 529 Query: 541 EYEARFGVSINVVIGIELADKLFY 564 ++ + + + V L F Sbjct: 530 KWFLQHMLFVRVKQDESLRSDDFR 553 >gi|145218838|ref|YP_001129547.1| ribonuclease [Prosthecochloris vibrioformis DSM 265] gi|145205002|gb|ABP36045.1| ribonuclease, Rne/Rng family [Chlorobium phaeovibrioides DSM 265] Length = 564 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 153/577 (26%), Positives = 287/577 (49%), Gaps = 25/577 (4%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L++ + +E +V ++ + R+ EL E ++ G+IYL +V +V L+AAFVD G Sbjct: 7 KQLLMNKT-GDEIQVALVEEGRLAELIIERPESRRSIGDIYLGRVHKVIEGLKAAFVDIG 65 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 GFL F ++ D +AL+++ + E + G + + S + Sbjct: 66 QKSDGFLHFSDVG-----TTTEDYKALIEDDDDDDDGVEGDEEGDAKGSSAVQAEPSGAK 120 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 + + + + I +K +LV Sbjct: 121 TVARSGGRGPSASGKDSRSEQAEK----------------RQSYTQMIAGKLKANDSILV 164 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q++KE KG+ +T+ +++AGR+ VL+P +SR++ + +R LK++ R + Sbjct: 165 QVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKLVRSMLPE 224 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G G I+RT + + +++D E L+ W + E ++ P L+++E +I +RD Sbjct: 225 -GFGAIIRTVAEMQEESLLRQDLEMLLGKWTQIEEKLKDATPPQLIFKEDTIISSVLRDS 283 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 D++EI+ + ++E ++++ P + V Y+ P+F GI ++S+ + Sbjct: 284 LNSDVTEIVANSPSIHKETLNYIEWAAPDMVKNVSLYQGKLPLFEGYGIAKDVESIFSRK 343 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEAA E+ RQLRLRD+ G+ Sbjct: 344 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGGI 403 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM + +N++ V +K L+ DRA+ + +S+FG+++++R+RIR S+++ Sbjct: 404 IVVDFIDMMDSRNSKKVYDTMKGELRNDRAKSNILPLSDFGVMQITRERIRPSLMQRMGD 463 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRATIV 540 C C G+G ++++ + I R + +Y LQ + + ++ V+ L N T + Sbjct: 464 QCPACGGSGVVQARFTTINQIERWLRKYALQQSMKFQQLDLYVSPTVIEPLQNSDMKTEM 523 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 ++ + + + V L F + + Sbjct: 524 KWFLQHLLFVRVKEDESLRSDDFRFYSRKNSKDITAE 560 >gi|225677132|ref|ZP_03788132.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590836|gb|EEH12063.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 587 Score = 341 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 214/594 (36%), Positives = 330/594 (55%), Gaps = 37/594 (6%) Query: 5 MLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +LI ++ E RV + +N+V E + E E KKQ++GNIY+A + R+EPSLQA F++YG Sbjct: 9 LLIENSICSNEVRVALSINNKVVEFEQEFEEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 N+ GFL F EI DY+ IP +++ + + Sbjct: 69 NKQGFLSFSEISLDYFNIPEKEKETIFE-------------------------------- 96 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + EE+ + ++D ++ + GS ++Y +Q+VI Q +LVQ Sbjct: 97 ---GYSNDDCIEEASANVSSDSAASKNVNESGSGFVREVPLYKKYKLQDVISVNQKILVQ 153 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KEERGNKGA+ TTY++L GRY V MPN+ +SR+I + RK LK+I + +P Sbjct: 154 LTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIEDANVRKQLKDILNLINLPK 213 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G+I+RT G+ ++K EI++D+ YL LW ++++ A + AP L+Y E ++I R++RD Sbjct: 214 RSGLIVRTVGSGKSKKEIEQDYNYLSSLWQSIQKNAFSVNAPSLIYNEADVIMRSVRDFC 273 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 D E+IVSG++ + K + + R Y PIF GIE Q+ L+ V Sbjct: 274 S-DGIEVIVSGKESFEAVKQYANNALKGSKLRYRLYRGYAPIFTYYGIEDQISELYSNRV 332 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 LPS G +II TEA VSIDVNSG+ T E IE+TA +TN+EA EI+RQ+ LR L+GLI Sbjct: 333 ELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNMEAVPEISRQVNLRGLSGLI 392 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 VVDFIDM + + R+VE +K++ K D+A+VQ I++FGL+ SRQRI+ ++ E T Sbjct: 393 VVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGLMVFSRQRIKPNIQEINTTE 452 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C +CKG G I+S + SILR ++ + + + HS V+ ++ N KR T+ E Sbjct: 453 CLHCKGTGRIKSNEVIVSSILRDLQHIANKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 512 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 F +++NV I L F +++G V + S ++ + Sbjct: 513 KEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGYQIGDSSNEEADNS 566 >gi|163735119|ref|ZP_02142555.1| ribonuclease E, putative [Roseobacter litoralis Och 149] gi|161391577|gb|EDQ15910.1| ribonuclease E, putative [Roseobacter litoralis Och 149] Length = 965 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 269/641 (41%), Positives = 367/641 (57%), Gaps = 12/641 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P + + + AQT + D + E + + S Sbjct: 224 PVEEPEGDDASAEAAQTADASDDQAAQAASEDTSADDTASEDGDDDDDDDAPRKPDASSK 283 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ + S +D V K R+Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLS Sbjct: 284 DDTIESVADDDDHDDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLS 343 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPNT++G ISRKITN DRK LKEIA +EVP G G+I+RTAGA RTK EI Sbjct: 344 LAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANEIEVPQGAGLIVRTAGAKRTKAEI 403 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRD+EYL RLW+ +REL L SVAP +YEEG+LIKR+IRDLY ++I E+ V GE+GYR A Sbjct: 404 KRDYEYLQRLWEQIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIA 463 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 KDFMK++MPS+A+ V+ Y + P+F R +E L S+ V LPS GY++I TEALV+ Sbjct: 464 KDFMKMIMPSHAKNVKLYTEGLPLFARYQVESYLASMFNPTVQLPSGGYIVIGVTEALVA 523 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSGR+T+E IE TAL+TNLEA++E+ARQLRLRDLAGLIV+D+IDM+E+KNN +VEK Sbjct: 524 VDVNSGRATKEGSIEQTALKTNLEASDEVARQLRLRDLAGLIVIDYIDMDERKNNAAVEK 583 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++K+ LK DRAR+QVG IS FGL+EMSRQR+R ++E+TT+ C C G G IRS S+AL Sbjct: 584 RMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCQACHGTGLIRSDDSLAL 643 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 SILR +EE + + +++ + +L+NQKR I EAR+G+S+ + L Sbjct: 644 SILRQIEEEGTRKRSREVLIKAPVGIANFLMNQKREHIAHIEARYGLSVRIEGDPMLVSP 703 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F +EK +V + D V D+ +P +E + + + Sbjct: 704 DFSLEKFKTATRVVPVAAQHVVSVDTSLMD----QVDADDEEIPAEVAEHAVETPNTENN 759 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E+ G R + + Q D++ + E Sbjct: 760 VENDGEDRPK--------RRRRRRRRRNKNGNGEAQTASDETNAEASDAPTAETPKEAEP 811 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + E + + P ++R K + Sbjct: 812 SPESAVDASAAKTDDAPAAAAEQEEAPAKPKRTRSRTRKPK 852 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 76/156 (48%), Positives = 95/156 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFV+ Sbjct: 58 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE 117 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++E +A D+ + Sbjct: 118 YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKAKEDEDEKPKRRRSRSRTK 177 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156 + + ++ + + D Sbjct: 178 AKAEDTTSEDAVATKDVESDQIGGMETIDLDDSEEG 213 >gi|189345576|ref|YP_001942105.1| ribonuclease, Rne/Rng family [Chlorobium limicola DSM 245] gi|189339723|gb|ACD89126.1| ribonuclease, Rne/Rng family [Chlorobium limicola DSM 245] Length = 566 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 160/579 (27%), Positives = 282/579 (48%), Gaps = 23/579 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ +E +V ++ + R+ EL E ++ G+IYL +V +V L+AAFVD Sbjct: 5 MNKQLLMN-KIGDEIQVALVEEGRLAELTIERPESRRSIGDIYLGRVHKVVEGLKAAFVD 63 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G GFL F ++ D +AL+++ + ++ S D Sbjct: 64 IGQKSDGFLHFSDVG-----TTNEDYRALIEDDDDDESVSSDDGDGDAVEVAATAGGGDP 118 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 P A Q + + I +K + Sbjct: 119 PAAGPHARGPQRNGGRKGPVTEEEKAEK--------------RQSYTQMIAGKLKPNDSI 164 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE +KG+ +T+ +++AGR+ VL+P +SR++ +R LK++ R + Sbjct: 165 LVQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVVRKERARLKKLVRSML 224 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RT + + +K+D E L+ W + E ++ P L+++E +I +R Sbjct: 225 PE-GFGAIIRTVAEQQEESLLKQDLEKLLTKWVQIEEKLKDASPPQLIFKEDTIISSVLR 283 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D D++EI+ + Y+E ++++ P + V Y+ P+F I ++S+ Sbjct: 284 DSLTSDVTEIVANSPVIYKETLNYIQWAAPEMEKNVSLYQGKLPLFEGYSIAKDVESIFS 343 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEAA EI RQLRLRD+ Sbjct: 344 RKVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIG 403 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDM + KN + V +K L+ DRA+ + +S+FG+++++R+RIR S+++ Sbjct: 404 GIIVVDFIDMLDPKNAKKVHDAMKTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRM 463 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRAT 538 C C G G ++++ + I R + +Y LQ + + ++ V L N + T Sbjct: 464 GDQCPACGGTGVVQARFTTINQIERWLRKYALQQSMKFQQLDLYVSPTVAEPLRNTEMKT 523 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 +++ + V + V L F + + Sbjct: 524 ELKWFLQHMVFVRVKQDESLRSDDFRFYNRKNNKDITAE 562 >gi|294677687|ref|YP_003578302.1| ribonuclease E [Rhodobacter capsulatus SB 1003] gi|294476507|gb|ADE85895.1| ribonuclease E [Rhodobacter capsulatus SB 1003] Length = 951 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 256/480 (53%), Positives = 330/480 (68%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 ++ S E+ + R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLA Sbjct: 229 EIESVAEEDVAEEIHAPRRPRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLA 288 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 GRY VLMPNT++G ISRKITN DRK LKEIA +EVP G G+I+RTAG+ RT+ EI+R Sbjct: 289 GRYCVLMPNTARGGGISRKITNAADRKKLKEIASEMEVPQGAGLIIRTAGSQRTRTEIRR 348 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 D+EYLMRLW+ +REL L S+AP +YEEG+LIKR+IRDLY KDI E++V GE+GYR AKD Sbjct: 349 DYEYLMRLWEQIRELTLKSIAPAPIYEEGDLIKRSIRDLYSKDIDEVLVEGERGYRVAKD 408 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 FMK++MPS+A+ V+ Y + P+F R +E L S+ V L S GY++I TEALV+ID Sbjct: 409 FMKMIMPSHAKNVKHYNEQLPLFARFQVESYLASMFNPVVQLKSGGYIVIGVTEALVAID 468 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNSGR+T+E IE+TAL+TNLEAAEEI+RQLRLRDLAGLIV+DFIDMEE+KNN +VEK+L Sbjct: 469 VNSGRATKEGSIEETALKTNLEAAEEISRQLRLRDLAGLIVIDFIDMEERKNNAAVEKRL 528 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 KE LK DRAR+QVG IS FGL+EMSRQR+R +LESTT+ C +C G G IRS S+AL + Sbjct: 529 KEKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSLALQV 588 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR++EE + + ++V V YL+N KR I EAR+G+++ + L F Sbjct: 589 LRAIEEEGTRKRSREVLVKCPVAVANYLMNAKREHIASIEARYGMAVRIEADPTLVSPDF 648 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 IEK +V H + A + E +E + ++ E Sbjct: 649 SIEKFKTATRIVPEVHSAVVHASAELMAEIDEEEIVEEEEDEVEEAAPAVAAAATGEPGE 708 Score = 190 bits (481), Expect = 8e-46, Method: Composition-based stats. Identities = 68/87 (78%), Positives = 77/87 (88%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+V+E DFE+ +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVDEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQ 87 YGGNRHGFL F EIHPDYYQIP +DRQ Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRQ 87 >gi|21675068|ref|NP_663133.1| ribonuclease G [Chlorobium tepidum TLS] gi|21648306|gb|AAM73475.1| ribonuclease G [Chlorobium tepidum TLS] Length = 560 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 161/564 (28%), Positives = 284/564 (50%), Gaps = 26/564 (4%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K L+ +E +V ++ + R+ EL E + G+IYL +V +V L+AAFVD G Sbjct: 6 KKQLLMNKIGDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAAFVDIG 65 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 GFL F ++ D +AL+++ + + + D+ D E Sbjct: 66 QKSDGFLHFSDVG-----TTSEDYRALVEDDDNDENGGDEDDDENEGDDNAEAPAPPREA 120 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 P E ++S A ++ I + +K +LV Sbjct: 121 ARPAGQQKSEQGQQSSGDAAE------------------RRQSYTQMIAQKLKPNDSILV 162 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q++KE G KG+ +T+ +++AGR+ VL+P +SR++ + +R LK++ R + Sbjct: 163 QVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPE 222 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G G I+RT + + +K+D E L+ W + E ++ P L+++E +I +RD Sbjct: 223 -GFGAIIRTVAEDQDESLLKQDLEKLLAKWTQIEEKLQDAQPPQLIFKEDTIISSVLRDS 281 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 D++EI+ + + Y E ++++ P + V YE P+F GI ++S+ + Sbjct: 282 LTTDVTEIVANSKSIYTETLNYIQWAAPDMVKNVSLYEGKLPLFEGYGIAKDVESIFSRK 341 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEAA E+ RQLRLRD+ G+ Sbjct: 342 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGGI 401 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM + KN++ V +K L+ DRA+ + +S+FG+++++R+RIR S+++ Sbjct: 402 IVVDFIDMMDPKNSKKVYDAMKAELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGD 461 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540 C C G G ++++ + + R + ++ LQ + +H V+ + N T + Sbjct: 462 QCPACGGTGVVQARFTTINQVERWLRKFALQQKVPFQQLDLHISPTVLEPMRNSDMKTEM 521 Query: 541 EYEARFGVSINVVIGIELADKLFY 564 ++ + V + + L F Sbjct: 522 KWFLQHLVFVRIKSDESLRSDDFR 545 >gi|302036383|ref|YP_003796705.1| ribonuclease G [Candidatus Nitrospira defluvii] gi|300604447|emb|CBK40779.1| Ribonuclease G [Candidatus Nitrospira defluvii] Length = 503 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 162/565 (28%), Positives = 261/565 (46%), Gaps = 65/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++ I + EETRV VL + V +L + + GNIY +V +V P +QAAF+D Sbjct: 1 MGVEIAISIAR-EETRVAVLDNGVVTDLYGDRAKDQDFVGNIYKGRVAKVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + F+ ++ D V GD + D Sbjct: 60 IGLEKAAFMHVSDLSMD-----------------------------VEPGDTLVEGDDDD 90 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + +++ + I+E++ Q + Sbjct: 91 NKDSEVPKPKRQSSKP---------------------------------IEELLSEGQEV 117 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQI K G KG+ VTTY+SL GRY V MP R + + + Sbjct: 118 MVQISKGPIGTKGSRVTTYVSLPGRYLVFMPTVEHIGVSRRIPRDEERAR--LKEIMKRA 175 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RT + E++ D E+L LW +V AP L++ + +L R +R Sbjct: 176 RRPGFGYIVRTVSEGVKEEELRSDVEFLHVLWQDVLTKRDQQPAPSLLHSDLSLSFRVVR 235 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ + + +++ + Y K F++ P + Y+ +F G+E ++ Sbjct: 236 DLFGRRVDRLLIDSREEYNAIKGFVQRFSPEQTSRIHFYDKEESLFDYLGVEQEIARAMS 295 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+ TEA+ IDVN+GR + E+T L+ NLEAA EIA Q++LR + Sbjct: 296 RKVWLKSGGYLVIDHTEAMTVIDVNTGRFVGKRDQEETILRNNLEAAREIAYQVKLRGIG 355 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDME +KN V L +++ D+AR ++ +S+ GL+E+SR+R+R +L S Sbjct: 356 GIIIVDFIDMEREKNRDKVYHALVDAMSSDKARTRISRVSDLGLIEISRERVREDLLRSL 415 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C YC G GY +S SVA I R V + ++V H V L L Q++ + Sbjct: 416 SEPCHYCDGRGYTKSPMSVAYEIFREVRRLGHEIEQQRVVVGAHPAVALLLQEQEQPGVE 475 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E R+ I V L + F + Sbjct: 476 ELERRYSAKILVTPDDRLHLEQFDL 500 >gi|189499019|ref|YP_001958489.1| ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides BS1] gi|189494460|gb|ACE03008.1| ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides BS1] Length = 570 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 157/564 (27%), Positives = 288/564 (51%), Gaps = 19/564 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L++ S +E +V ++ + R+ EL E + G+IYL +V +V L+AAFVD G Sbjct: 7 KQLLMNKS-GDEIQVALVEEGRLAELVIERPDSLRSIGDIYLGRVHKVVEGLKAAFVDIG 65 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 GFL F ++ D +AL+++ + + D+ + + + Sbjct: 66 QKSDGFLHFSDVG-----TTTEDYRALIEDDDDDDENGNGDTDEEGKAGMKTQQEQKEDT 120 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 P + + S N D + I +K +LV Sbjct: 121 RRPSPAGNGQKNGGSRSKGNGASAGKDGD----------GRQSYTQMIAGKLKTNDSILV 170 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q++KE NKG+ +T+ +++AGR+ VL+P +SR++ + +R LK++ R + Sbjct: 171 QVIKEPISNKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERARLKKLVRSMLPD 230 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G G I+RT + + +K+D E L+ W+ + E ++ P L+++E +I +RD Sbjct: 231 -GFGAIIRTVAELQEEELLKKDLEKLLVKWEQIEEKLKDAKPPQLIFKEDTIISSVLRDS 289 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 D++E++ + + ++E ++++ P + V Y+ P+F GI ++S+ + Sbjct: 290 LTTDVTELVANSQSIHKETLNYIQWAAPEMEKNVFFYQGKLPLFEGYGIAKDVESIFSRK 349 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEA+ E+ RQLRLRD+ G+ Sbjct: 350 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKKEQEENSLKTNLEASREVVRQLRLRDIGGI 409 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM + KN++ V +K L++DRA+ + +S+FGL++++R+RIR S+++ Sbjct: 410 IVVDFIDMLDPKNSKKVYDSMKNELRQDRAKSNILPMSDFGLMQITRERIRPSLMQRMGD 469 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540 C C G+G ++++ + I R + +Y LQ + ++ V L + R + Sbjct: 470 QCPACGGSGIVQARCTTINQIERWLRKYALQKKMVFQQLDLYVSPTVAEPLRDTDRNIEM 529 Query: 541 EYEARFGVSINVVIGIELADKLFY 564 ++ + + + V L F Sbjct: 530 KWFLQHLLFVRVKQDESLRSDDFR 553 >gi|149200573|ref|ZP_01877581.1| ribonuclease E [Lentisphaera araneosa HTCC2155] gi|149136345|gb|EDM24790.1| ribonuclease E [Lentisphaera araneosa HTCC2155] Length = 534 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 164/564 (29%), Positives = 281/564 (49%), Gaps = 42/564 (7%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ ETRV ++ +N + E + E ++++ G+I+ ++ +E SLQAAFVD G Sbjct: 2 KQIFIN-KEQLETRVAMVENNTLTEYEVERYDQERLVGSIFKGRIKNLENSLQAAFVDIG 60 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ FL + ++ IP + L ++ + D Sbjct: 61 FQKNAFLHYWDM------IPAAYNDGLFEQ-------------------DAMSKDTVAAM 95 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 A I + + T ++S+ S + D + I E+ ++V Sbjct: 96 DANIGDSFRSTIKKSMKSKDGDEQERMRQEIE--------------RIPEIFPVGSEVIV 141 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q+ K G KG VTT LS+ GRY VL+P+TS R + + L+ I R + +P Sbjct: 142 QVTKGPIGTKGPRVTTNLSIPGRYLVLLPHTSHIGVSKRIQNHKERDR-LRNILRKMSLP 200 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 MG I RT G + + D E L+ +WD + AP+ +Y E +L+ R+ R Sbjct: 201 ERMGCICRTLGDGKPEEYFHNDIEMLLDIWDTMERNRQTQRAPYCLYREPDLMSRSTRYF 260 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 + E+ + Y + + + + ++ + P+F GI Q+DS+ + + Sbjct: 261 LTDSVDEVWIDNHDAYADFRKTIVKISDVNIGKLKHHNKHKPLFQHFGIAKQIDSIFERQ 320 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V+LPS GY+ I++TEAL++ID+NSG++ + +T L TNLEAAE IARQLRLRD+ GL Sbjct: 321 VSLPSGGYICIDETEALIAIDINSGKARQGKDHPETILMTNLEAAEAIARQLRLRDIGGL 380 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 +V+DFIDM KK+ V + LK++++ D+A+ ++ IS GLLEM+RQR S+ +S Sbjct: 381 VVIDFIDMRSKKDQMQVYRSLKKAVQHDKAKTKISPISQLGLLEMTRQREHQSLKDSLYT 440 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVVLYLLNQKRATIVE 541 C+ C+G G ++S SV++ I R ++ L + + V H D++ L ++ + Sbjct: 441 PCSNCEGKGVVKSMVSVSVEIQRKLQALLKRTKEKIEVRVICHPDILHRLRDEDARILRN 500 Query: 542 YEARFGVSINVVIGIELADKLFYI 565 E G +++ L + F + Sbjct: 501 MEKSLGGNLSFRADDSLHVEEFKV 524 >gi|258544481|ref|ZP_05704715.1| ribonuclease G and E [Cardiobacterium hominis ATCC 15826] gi|258520289|gb|EEV89148.1| ribonuclease G and E [Cardiobacterium hominis ATCC 15826] Length = 1302 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 224/666 (33%), Positives = 332/666 (49%), Gaps = 51/666 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV------E 150 + A+ D D+ I +S ++ A I E S+ +A D + + Sbjct: 9 EELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQRHGFLPFK 68 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + Q +++I+ Q +LVQI KEERGNKGAA+TTY+SLAGR+ VLM Sbjct: 69 EIGKEYLTGSTTAHEGQLAFKDMIEVGQEVLVQIDKEERGNKGAALTTYISLAGRFLVLM 128 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + +SR+I K L+E L+VP MG+I+RTAG R + E++ D ++L++ Sbjct: 129 PNNPRAGGVSRRIQGDDR-KELRETLDMLDVPENMGIIVRTAGVGRAQEELQWDLDFLLQ 187 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ + E + L+Y+E N+I RA+RD DI +I++ E+ Y++A DFM L+MP Sbjct: 188 LWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVYQQASDFMTLVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y+D P+F R IE Q++S +Q V LPS G ++I+ TEALVSID+NS ++T Sbjct: 248 NNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEALVSIDINSSKAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAA+EIARQ+RLRDL GLIV+DFIDM +N + VE +L E+ K D Sbjct: 308 KGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKDVENRLYEATKID 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGLLE+SRQR+R S+ ES+ +VC CKG G IR S+ALS+LR +EE Sbjct: 368 RARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQSMALSLLRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I + YLLN+KRA I + E R V + +V +L +YIE+ Sbjct: 428 AMKERTRRITGELPVSIATYLLNEKRAVIRQIEQRNKVEVVLVPNADLHTPDYYIERLRD 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES------------------- 611 + +T + V ++ Sbjct: 488 DELDEDTAPTPSYRLRTRHESHEESDVVAKPGEAVTEQAAVQGVVPRAPAPQVAPTVQKS 547 Query: 612 -------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 E+ EE+ +RR R V + Sbjct: 548 GLAALFSKVVALFKENRDPASAVEETAKTTAGDKRRERTAPARNRRERNERQEPVQPPRK 607 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP------------PVSTPEMESSN 706 + + EP +N NG + E P +TP E ++ Sbjct: 608 TAEAKAESVQEPRQAPRNNENGNGKNQRQEEAARRYEEALQQDIVREEAPAATPRREKAS 667 Query: 707 SSSDPI 712 S+ P Sbjct: 668 RSALPK 673 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 40/74 (54%), Positives = 53/74 (71%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD E+ + Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60 Query: 65 RHGFLPFLEIHPDY 78 RHGFLPF EI +Y Sbjct: 61 RHGFLPFKEIGKEY 74 >gi|124516663|gb|EAY58171.1| ribonucleases G and E [Leptospirillum rubarum] Length = 527 Score = 338 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 188/565 (33%), Positives = 284/565 (50%), Gaps = 45/565 (7%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI SH EET+V ++ + ++ E FE + + + GNIY +V +V P +QAAFVD G Sbjct: 2 EILIHVSH-EETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGL 60 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 + FL +I+ V D+ ++ Sbjct: 61 EKAAFLYVDDIY-------------------------------VEGSDILPGEMPQDDQT 89 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 AP E+ E ++ + G P + + I+E++ Q +L+Q Sbjct: 90 APPPPVEGESPAEGSLTEDP--------AAGPVSRPEPPRKVPRKPIEEILTEGQEILIQ 141 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KE KG TTY+SL GRY V MP + +SR+ITN +R+ LKE+ L+ Sbjct: 142 MTKEPISTKGPRATTYISLPGRYLVYMPQVNHVG-VSRRITNEEERQRLKEMVNALKGGK 200 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G G I+RT ++ E + D +L LW ++R A AP LV E+ +++ R IRD Sbjct: 201 G-GYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETMKAPSLVREDLDVVFRTIRDYL 259 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 ++ + + K Y+ DF+ MP YA VR +E P P+F IE QL + +V Sbjct: 260 THEVETLYIDDVKEYKRVMDFIGTYMPDYASRVRLWEGPTPLFASYDIERQLSKALEKKV 319 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY++I++ EAL IDVN+GR E+ E T LQTNLEA EIARQLRLR++ G+I Sbjct: 320 WLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTNLEAVTEIARQLRLRNIGGII 379 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 ++DFIDME++KN V + L+ESL D+AR IS+ GL+EMSR+R+R ++ + Sbjct: 380 IIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISDLGLVEMSRKRVREDLVHLLGET 439 Query: 484 CTYCKGAGYIRSQSSVALSI---LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C YC G GY +S ++A I LRSV I+ H ++ L ++R + Sbjct: 440 CAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAILFVHPEIQTILQEEERDFLQ 499 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E + I + + F I Sbjct: 500 AVERKIRRQIIIKPDPLSHIEEFSI 524 >gi|163746412|ref|ZP_02153770.1| ribonuclease E, putative [Oceanibulbus indolifex HEL-45] gi|161380297|gb|EDQ04708.1| ribonuclease E, putative [Oceanibulbus indolifex HEL-45] Length = 941 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 268/630 (42%), Positives = 362/630 (57%), Gaps = 5/630 (0%) Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 L + V + + + E N + E + ++ + S Sbjct: 151 LDSEEGSSPMERVAETPVEEPEGNGDDGDAFEATDATENNANEANGSDATAKDDSIESVA 210 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ++ V K R+Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VL Sbjct: 211 DEDDSEDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVL 270 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITN VDRK LKEIA +EVP G G+I+RTAGA RTK EIKRD+EYL Sbjct: 271 MPNTARGGGISRKITNAVDRKKLKEIATEIEVPKGAGLIVRTAGAKRTKAEIKRDYEYLQ 330 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+ +REL L S+AP +YEEG+LIKR+IRDLY ++I EI V GE+GYR AKDFMK++M Sbjct: 331 RLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEIHVEGERGYRIAKDFMKMIM 390 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A+ V+ Y + P+F R +E L + V LPS GY++I TEALV+IDVNSGR+ Sbjct: 391 PSHAKNVKLYNESLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRA 450 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+E IE TA +TNLEAA E+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK +K+ LK Sbjct: 451 TKEGSIEQTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKMMKDKLKT 510 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS FGL+EMSRQR+R ++E+TT+ C C G G +RS ++ALSI+R +EE Sbjct: 511 DRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLVRSDDNLALSIIRQIEE 570 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + ++V + +L+NQKR I E R+G+S+ + L F+IEK Sbjct: 571 EGTRRRSREVLVRAPVGIANFLMNQKREHIAHIEMRYGMSVRIEGDPSLVSPDFHIEKFK 630 Query: 570 PVQALVNTGHKVGSDSQAPSYD-----KNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 V D ++ +EA S+S + + + Sbjct: 631 TATRTVPPVSDHVVSVDTSLMDQIDEDESAAEAEAEEAPAAQDPSQSEDGNGNGNANGNG 690 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 G + +RRR + QN +D D + + ++ Sbjct: 691 NGEEGDGEGKSKRRRRRRRSRGGRGRNGNGEQQNGAEDQNDGQQQDAAQSDDAEKSQPVE 750 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 T + P + + + S K Sbjct: 751 AETPQSEGETAPAAEEKPKPKGRSRSRKPK 780 Score = 197 bits (500), Expect = 5e-48, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 96/174 (55%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP +DRQALL+E A +D T + Sbjct: 61 RHGFLAFSEIHPDYYQIPVADRQALLEEERAYAEAQAAKDEDDEKPKRTRSRSRGRSKSQ 120 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 S + S +S + + E+ +R Sbjct: 121 AAETNSDDAVATSEVSDESSDQIAGMETVDLDSEEGSSPMERVAETPVEEPEGN 174 >gi|255020146|ref|ZP_05292216.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Acidithiobacillus caldus ATCC 51756] gi|254970439|gb|EET27931.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Acidithiobacillus caldus ATCC 51756] Length = 509 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 138/565 (24%), Positives = 243/565 (43%), Gaps = 72/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +E RV ++ + ++E+ E + + GNIY V RV P +QAAF+D Sbjct: 14 MSEELLINVT-PQEIRVALVDNGVLQEVQIERSSHRGLVGNIYKGVVRRVLPGMQAAFID 72 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +I +++ +GD + + Sbjct: 73 IGLERTAFLHAGDIQ----------------------------DEEMDNGDTDLETRADM 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +E ++ D V + G+ +Y + R + Sbjct: 105 AHEVRSVATLLHEGQEVVVQVIKDPVGS-----KGARLSTRITLPGRYLVYMPYVPRLGV 159 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I + L G ++P G I R + + ++ L Sbjct: 160 SSRIEDPGERER---------LKGILKAMIPADEDGGYIIRTLAEGTEAEDFASDLDFLG 210 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +V E ++ AP L++++ NL R +R Sbjct: 211 RLW-----------------------------QSVHEQVASARAPQLIHQDLNLALRVMR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ DI + + + + A+ F ++P + Y P+F +E +++ Q Sbjct: 242 DVMSDDIQRVRIDSRETFEAARQFCAEVIPEVVERIEHYAGDRPLFDLYNVEDEIERALQ 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 + VTL S Y+II+QTEAL ++DVN+G E+T L+TNLEAA IARQLRLR++ Sbjct: 302 SRVTLKSGAYLIIDQTEALTTVDVNTGAFVGRRNQEETILKTNLEAAAAIARQLRLRNIG 361 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++++ R V + L+++L+ D R + IS GL+EM+R+R R S+ + Sbjct: 362 GMIIIDFIDMEDEEHKRRVHRALEKALQSDHTRCSITQISALGLVEMTRKRTRESLRQIL 421 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC G G++++ ++ ILR + Y A +V V LL+++ ++ Sbjct: 422 CEPCPYCHGRGFMKTAETICYEILREIVRETRAYPAERFVVLASVKVADKLLDEESTSLA 481 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E G I V + + I Sbjct: 482 ALEEFIGRPIRVQAEQTYTQEQYDI 506 >gi|56478531|ref|YP_160120.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1] gi|56314574|emb|CAI09219.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1] Length = 1007 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 213/674 (31%), Positives = 321/674 (47%), Gaps = 46/674 (6%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D D+ I + + + I E S+ +A D Sbjct: 10 QAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGGERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + P + IQE +K Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLM Sbjct: 70 FKEISRTYFAPGADAGKVRIQEALKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR++ + L+++ LE+P+GM +I RTA R E++ D YL++ Sbjct: 130 PNNPRGGGVSRRVEGDERTE-LRDVMDQLEIPSGMSLIARTAAIGRNAEELQWDLNYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A + L+Y+EG+L+ RAIRD + +I EI++ + Y +A+ FM +MP Sbjct: 189 LWRAIDGAAQSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDVYEQARQFMSHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + V++Y D P+F R IE Q++S + +VTLPS G V+I+ TEALVSIDVNSGRST Sbjct: 249 ANVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVTLPSGGAVVIDHTEALVSIDVNSGRST 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAAEEIARQLRLRDL GLIV+DFIDME +KN R VE L+++L+ D Sbjct: 309 KGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVEGLLRDALRHD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGLLE+SRQR+R ++ E++ C C G G+IRS S AL ILR +EE Sbjct: 369 RARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALHILRILEEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + + DV +LLN+KR I E R + + ++ L I + Sbjct: 429 AMKENTGAVHLQVPVDVATFLLNEKRVDIAHIEVRHKIQLIIIPNRHLETPHHEIIRLRH 488 Query: 571 V----------------------------QALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 + + +P+ I + Sbjct: 489 DQLNQEEVALASYQMVGKPAEIDLRLPSKEDTKPPRAEAVVKGISPAQPAPIVEPKTEPV 548 Query: 603 LLPIPKSE-------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + P + S + ++ E R R R ++ + Sbjct: 549 VAPGLAPKPAGLFQRLFGWLRSEKPAVTPQMAPEIAPKPESRPRAERSDTRRGNNRNRRD 608 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + + + + TE D + P ++ Sbjct: 609 GQQRTERGERDESTSAAQTARGPVRGERAERPERSERTERSDTGVDRGDRPARPERDNGG 668 Query: 710 DPIVKKTRWWKRRK 723 + + + ++ Sbjct: 669 RTRQGRGQRTQPKQ 682 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 2/110 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY A +TR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQAL-LKESNIAQTDSEAVADDVTHGD 111 G RHGFLPF EI Y+ P +D + ++E+ + + G+ Sbjct: 62 GERHGFLPFKEISRTYF-APGADAGKVRIQEALKEGQELIVQVEKDERGN 110 >gi|224367786|ref|YP_002601949.1| Rne1 [Desulfobacterium autotrophicum HRM2] gi|223690502|gb|ACN13785.1| Rne1 [Desulfobacterium autotrophicum HRM2] Length = 519 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 155/565 (27%), Positives = 261/565 (46%), Gaps = 52/565 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++A+ ETRV +L + + EL E + + I GNIY K+ RV P +QAAFVD Sbjct: 1 MLKELVVNAAE-HETRVALLENGTIAELFIEQDDESNITGNIYKGKIQRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I+ + + Sbjct: 60 IGLAQAAFLYVDDIY----------------------------DETSQELARRFEQESDA 91 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + P +T + F + I++++ Q + Sbjct: 92 DPNDPDLKPVDDTPIP---------------------MEWKPSFTTEASIEDLVTEGQEI 130 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQI K G KG VT ++SL GR+ VLMP R + + + Sbjct: 131 LVQISKSPIGTKGPRVTAHISLPGRFMVLMPTVDHVGISKRITADSERTR--LKELLTSV 188 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G I RTA + +K++ +L + W+++++ S AP L+Y + + RA+R Sbjct: 189 RQDNFGYIFRTAAQGIDEQRLKKEIAFLTKTWESIQKKNKTSAAPTLLYRDLTVTFRAVR 248 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL + ++++ + GY F+ LMP V Y+ PIF IE + + Sbjct: 249 DLLTDEADKLVIDSKIGYESVLSFLDKLMPDIHVSVELYQGKEPIFDAYNIEGDITRALK 308 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+ TEALV+IDVN+GR +H ++T L+TNLEA +EIA Q+RLR++ Sbjct: 309 KKVWLKSGGYIIIDPTEALVAIDVNTGRYVGKHNFDETILKTNLEAVKEIAYQIRLRNIG 368 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+ ++ V L E+LK+D+A+ V +S GL++M+R+R+R ++ + Sbjct: 369 GIIIIDFIDMKRTQHKEKVMNLLIETLKRDKAQTNVLPLSELGLVQMTRKRVRKNLTRTL 428 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC G G + S+ S+ I R + + V H ++ L ++ I+ Sbjct: 429 CEPCFYCGGDGMLLSKRSICYKIHRDLMSEANDIMGNMFTVKVHPEIAQLLHGEQEHLII 488 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E I + + + ++I Sbjct: 489 SLEREIRRPITIYPDPQYHIEEYHI 513 >gi|206603577|gb|EDZ40057.1| Ribonucleases G and E [Leptospirillum sp. Group II '5-way CG'] Length = 526 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 187/565 (33%), Positives = 280/565 (49%), Gaps = 46/565 (8%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI SH EET+V ++ + ++ E FE + + + GNIY +V +V P +QAAFVD G Sbjct: 2 EILIHVSH-EETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGL 60 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 + FL +I+ V D+ E+ Sbjct: 61 EKAAFLYVDDIY-------------------------------VEGSDILPGEMPQDEQT 89 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 P A + E + G P + + I+E++ Q +L+Q Sbjct: 90 PPPAAEGEIPAEALPSE---------DSAAGVVPRPESPRKMPRKPIEEILTEGQEILIQ 140 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KE KG TTY+SL GRY V MP + +SR+ITN +R+ LKE+ L+ Sbjct: 141 MTKEPISTKGPRATTYISLPGRYLVYMPQVNHVG-VSRRITNEEERQRLKEMVNSLKGGK 199 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G G I+RT ++ E + D +L LW ++R A AP LV E+ +++ R IRD Sbjct: 200 G-GYIIRTVAEGMSEAEARSDIIFLELLWQDIRSRAETMKAPSLVREDLDVVFRTIRDYL 258 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 ++ + + K Y+ DF+ MP YA VR +E P+F IE QL + +V Sbjct: 259 THEVETLYIDDVKEYKRVMDFIGTYMPDYASRVRLWEGATPLFASYDIERQLSKALEKKV 318 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY++I++ EAL IDVN+GR E+ E T LQTNLEA EIARQLRLR++ G+I Sbjct: 319 WLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTNLEAVTEIARQLRLRNIGGII 378 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 ++DFIDME++KN V L+ESL D+AR IS+ GL+EMSR+R+R ++ + Sbjct: 379 IIDFIDMEKEKNREKVFLGLQESLAHDKARTNALKISDLGLVEMSRKRVREDLVHLLGET 438 Query: 484 CTYCKGAGYIRSQSSVALSI---LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C YC G GY +S ++A I LRSV I+ H ++ L +++R + Sbjct: 439 CAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAILFVHPEIQTILQDEERDFLQ 498 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E + I + + F I Sbjct: 499 AVERKIRRQIIIKPDPLSHIEEFSI 523 >gi|118578792|ref|YP_900042.1| ribonuclease [Pelobacter propionicus DSM 2379] gi|118501502|gb|ABK97984.1| RNAse G [Pelobacter propionicus DSM 2379] Length = 507 Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 276/565 (48%), Gaps = 61/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +++I+A+ ETR+ ++ + + EL E +K I GNIY +V RV P +QAAFVD Sbjct: 1 MATELVINAT-SHETRIALIENGTIAELHIERTREKGIIGNIYKGRVIRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ Sbjct: 60 IGLEKAAFLYVADV---------------------------------------FDAIEEY 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + E + + ++ D + I+E+++ Q L Sbjct: 81 ESLLYNGKKEHEPNGDQLPASQPDFKPL-------------------HPIEELLQEGQEL 121 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQI KE G KGA +T+++SL GR+ V MP + + + A Sbjct: 122 LVQISKEPIGTKGARITSHISLPGRHLVYMPTVDHVGIS--RRIEEENERERLREAVERL 179 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RT +++ ++ D +YL LW + + N+ AP L++ + ++I++ +R Sbjct: 180 KQPGSGYIVRTVSEGKSEEDLLSDMQYLSTLWGEITKRKENAPAPSLIHSDLDVIQKVVR 239 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + + IIV + Y F+ MP + Y+D PIF G+EV++ Sbjct: 240 DIVTEQVDTIIVDSKPDYDRIVQFITTFMPKMKYSIELYDDEEPIFDHFGLEVEISRALG 299 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR++ Sbjct: 300 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 359 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+++LK D+++ + IS GL+EM+R+R+R S+ Sbjct: 360 GIIIIDFIDMEKEVNRDKVFTALEDTLKSDKSKTNILKISELGLVEMTRKRVRESIGRMM 419 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + CTYC+G GYI+S+++V I R + +L +V H V L +++R + Sbjct: 420 CEPCTYCEGRGYIKSKTTVCHEIFRELRREMLDSRGTKAMVSVHPQVADLLYDEERRGLE 479 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E +F I V + F I Sbjct: 480 ELEKKFRKRITVRAKPGFHQEQFEI 504 >gi|83953705|ref|ZP_00962426.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1] gi|83841650|gb|EAP80819.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1] Length = 970 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 263/633 (41%), Positives = 363/633 (57%), Gaps = 12/633 (1%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + A D P ++ + + + S ++ + S +D Sbjct: 173 DDSKAEGDTPKAAKADAKDAAKPGADDQDDSDDADDSDDSPKAKDASSKDDSIESVADDD 232 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K ++Y IQEV+K RQILLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN Sbjct: 233 DHDDLRTARKPRPKRYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPN 292 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 T++G ISRKITN DRK LKEIA ++VP G G+I+RTAGA RTK EIKRD+EYL RLW Sbjct: 293 TARGGGISRKITNAADRKKLKEIANEIQVPKGAGLIVRTAGAQRTKAEIKRDYEYLQRLW 352 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + +REL L S+AP +YEEG+LIKR+IRDLY ++I E+ V GE+GYR AKDFMK++MPS+ Sbjct: 353 EQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMPSH 412 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A+ V+ Y + P+F R +E L + V LPS GY++I TEALV+IDVNSGR+T+E Sbjct: 413 AKNVKLYSETLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKE 472 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE TA +TNLEAA E+ARQLRLRDLAGLIV+DFIDM+E++NN +VEK +KE LK DRA Sbjct: 473 GSIEQTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERRNNAAVEKLMKEKLKTDRA 532 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+QVG IS FGL+EMSRQR+R ++E+TT+ C C G G IRS ++ALSILR +EE Sbjct: 533 RIQVGRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLIRSDDNLALSILRQIEEEGT 592 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +++ + +L+NQKR I E R+G+++ + L F +EK Sbjct: 593 RKRSREVLITAPVGIANFLMNQKREHIAHIEGRYGMAVRIEGDPALVSPDFSLEKFKTAT 652 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 +V V S + + + V A +++ N + G Sbjct: 653 RVVTPIEHVVSVDTSIMDEVDDLDVD---AEADADNADNEPTGNGNGGQNQHNGSDDDND 709 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + +R G S+ N ++ TN + ++ A TE Sbjct: 710 GEGKPKRRRRRRRRRGGKSNGDDAANGENNGDS-------NTNGDNGDSDAPAQTEADTA 762 Query: 693 SIPPVSTPEMESS--NSSSDPIVKKTRWWKRRK 723 + + + + + P K R R + Sbjct: 763 GSKDDAKTDATADGASDDAKPQDKPKRTRSRTR 795 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 77/154 (50%), Positives = 97/154 (62%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP +DR AL++E A D+ + + A Sbjct: 61 RHGFLAFSEIHPDYYQIPVADRLALMEEERAYAEAQAAKEDEDEKPKRRTRSRSRSKSKA 120 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 T + + ++D ++ ++ V E Sbjct: 121 EDTVSDDATVSKDADATDSDQINGMQTVDLDDEE 154 Score = 39.2 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 6/114 (5%) Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + + Q EA K ++ D + S+++ + +R R R R+P D V Sbjct: 750 DSDAPAQTEADTAGSKDDAKTDATADGASDDAKPQDKPKRTRSRTRKPKADAAAEATVDA 809 Query: 653 VSSIQ------NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + + +P E + P TP Sbjct: 810 DAKTSEDAKPADADAAEDAPKPKPKRTRTRKPKAAPVEATEEGSQEAPKPEETP 863 >gi|238022128|ref|ZP_04602554.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147] gi|237866742|gb|EEP67784.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147] Length = 967 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 215/651 (33%), Positives = 322/651 (49%), Gaps = 27/651 (4%) Query: 94 NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE--- 150 A+ A+ D T D+ I + I + E S+ + D + Sbjct: 9 RQAEELRVAIVDGQTLIDLDIETLGKEQRKGNIYTGTITRIEPSLEACFVDYGMDRHGFL 68 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TTY+SLAGRY VLM Sbjct: 69 PFKEVSRAYFQDYEGGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTYISLAGRYLVLM 128 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE L+VP GM +I RTAG RT E+ DF YL++ Sbjct: 129 PNNPRGGGVSRRIEGEDRAE-LKEAMAQLDVPHGMSLIARTAGIGRTSEELAWDFNYLLQ 187 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + E A P+L++ E +L+ RAIRD + DI EI+V + Y + +FM +MP Sbjct: 188 LWRAIEEAAAAHPEPYLLFMESSLVIRAIRDYFRPDIGEILVDNPEVYEQVSEFMSYVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y+D P+F R IE Q++++ EVTLPS G ++I+ TEALVS+DVNS RST Sbjct: 248 NNLGRLKLYDDHIPLFSRLQIEQQIETVFSREVTLPSGGAIVIDHTEALVSVDVNSARST 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE LK++LK+D Sbjct: 308 RGADIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQREVENTLKDALKRD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IRS S AL +LR +++ Sbjct: 368 RARVQMGKLSKFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHVLRLIQDA 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + DV +LLN+KRA + E R VS+ ++ L + + I + Sbjct: 428 AMKENTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNPHLENPHYEISRIRV 487 Query: 571 VQALVNTGHKVGSDSQAPSYD------KNIECVWQDEALLPIPKSESLEDIQDNIVSE-- 622 N +Q S + K E E + S + + Sbjct: 488 DDLDDNAAPSYKRVTQPESSETVPFANKKGEKAMHPEPAVKGVHHASPPPVVASSSQSWW 547 Query: 623 ---------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 K+ R R T + + + + + Sbjct: 548 ESFKGWLKKLFGGDAGEPAAPAKKSSSRNERSGGTSNKRSNRRNKRRESSEEKSANGNAN 607 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + +N + G N + + +++ K+ R Sbjct: 608 NNGNSSNGNNGERKNSRGRNANTAANEENAEAKALMQPENATAKAEKEPRN 658 Score = 127 bits (317), Expect = 8e-27, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 53/78 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNARQAEELRVAIVDGQTLIDLDIETLGKEQRKGNIYTGTITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 MDRHGFLPFKEVSRAYFQ 79 >gi|149911609|ref|ZP_01900221.1| ribonuclease E [Moritella sp. PE36] gi|149805330|gb|EDM65343.1| ribonuclease E [Moritella sp. PE36] Length = 1125 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 210/632 (33%), Positives = 326/632 (51%), Gaps = 16/632 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------VE 150 + A+ D D+ I + ++ A I E S+ +A D ++ ++ Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLPLK 68 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + K + + I++VI ++VQI KEERGNKGAA+TT++SLAG Y VLM Sbjct: 69 EISRAYFKQGTGKQRGRPSIKDVIAEGTEVIVQIEKEERGNKGAALTTFISLAGSYLVLM 128 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + LK LE+P GMG+I+RTAG ++ E+ D + L+ Sbjct: 129 PNNPRAGGISRRIEGDERTE-LKTALATLELPEGMGLIVRTAGVGKSAEELDWDLKVLLN 187 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W +++ A + L+++E N+I RAIRD +DI EI++ K + EAK+ +KL+ P Sbjct: 188 HWQAIQDSAKDRQGTFLIHQESNVIARAIRDYLRRDIGEILIDHPKAFEEAKNRIKLIRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SIDVNS R+T Sbjct: 248 DFIDRIKLYQGDVPLFNHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL TNLEAA+E+ARQLRLRDL GL+V+DFIDM KN R VE L++++++D Sbjct: 308 RGGDIEETALTTNLEAADEVARQLRLRDLGGLVVIDFIDMGPVKNQREVENCLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGL+EMSRQRIR S+ ES+T VC C G G IR S+ALSILR +EE Sbjct: 368 RARIQLGRISRFGLMEMSRQRIRPSLGESSTHVCPRCDGQGTIRDNESLALSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ ++I+ V YLLN+KR +I+ E R+ V ++ L F + + Sbjct: 428 SLKENTNHIVAQVPVPVAAYLLNEKRNSILRLEKRYKVKSFIIPNENLQTPNFEVSRVKA 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + + + + L+ + + ++ + +++T + Sbjct: 488 DDDSSELSSTDLAQPREFTRYEPKVNNETVQPLVQQMNTPEVASVRPSQTVKKATSNTKP 547 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 + + + H V S + S + + + + A N Sbjct: 548 K-APAQAKSAKPIAHKESVFSRLGKAITGFFASDEKVVV-KETVKQAPKKPVADKTPSNS 605 Query: 691 DVSI-------PPVSTPEMESSNSSSDPIVKK 715 D E+ + KK Sbjct: 606 DSDEPRKPRNRRNRKPRNPENVENKQQDANKK 637 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 42/76 (55%), Positives = 54/76 (71%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG + Sbjct: 1 MLINATQKEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD 60 Query: 65 RHGFLPFLEIHPDYYQ 80 RHGFLP EI Y++ Sbjct: 61 RHGFLPLKEISRAYFK 76 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 10/145 (6%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E Q N V K P +S+ +++ ++ ++ Sbjct: 625 ENVENKQQDANKKADVEVKQHNKFEAKPKTPTQD----KPAVQSKDVKERKEEGSAQNQA 680 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI----DDSFDMYMEPSDITNHNLLE- 680 + +R+RR R++ ++ V ++ D +P+ T + Sbjct: 681 VLAERRQRRNLRKKVRVTSNELKVTTESEQNAETSVISDKPQRDENAQPAKRTRRSPRNA 740 Query: 681 -NGAHGFTENYDVSIPPVSTPEMES 704 TE+ V V+ P + Sbjct: 741 KTSDVQKTEHAQVQTEQVAKPVIAE 765 Score = 37.3 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 36/137 (26%), Gaps = 3/137 (2%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR---R 633 + D ++ + EA P + ++ + G + + Sbjct: 625 ENVENKQQDANKKADVEVKQHNKFEAKPKTPTQDKPAVQSKDVKERKEEGSAQNQAVLAE 684 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 RR+RR V++ ++ + +P N + Sbjct: 685 RRQRRNLRKKVRVTSNELKVTTESEQNAETSVISDKPQRDENAQPAKRTRRSPRNAKTSD 744 Query: 694 IPPVSTPEMESSNSSSD 710 + ++++ + Sbjct: 745 VQKTEHAQVQTEQVAKP 761 >gi|254466116|ref|ZP_05079527.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium Y4I] gi|206687024|gb|EDZ47506.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium Y4I] Length = 973 Score = 335 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 259/581 (44%), Positives = 353/581 (60%) Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + + + + E+ + + ++ S E+ K R+Y IQEVIK RQ Sbjct: 231 AEDTARDEGDENGESLRADAAAKDENIESVAEEDDSEDIRPPRKPRPRRYKIQEVIKVRQ 290 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 +LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK LK+IA Sbjct: 291 VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIASE 350 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP +YEEG+LIKR+ Sbjct: 351 LDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRS 410 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 IRDLY ++I E++V G++GYR AKDFMK++MPS+A+ V+ Y+D P+F R +E L + Sbjct: 411 IRDLYNREIDEVLVEGDRGYRIAKDFMKMIMPSHAKNVKHYQDALPLFARYQVESYLGGM 470 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 V L S GY++I TEALV+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRD Sbjct: 471 FNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEASIEETALKTNLEAAEEVARQLRLRD 530 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 LAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR+R ++E Sbjct: 531 LAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIE 590 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT C +C G G IRS S+ALSILR +EE + + ++V + +L+NQKR Sbjct: 591 ATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREVLVRCPVSIANFLMNQKREH 650 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 I + EAR+G+S+ + L F +EK V ++ Sbjct: 651 IAQIEARYGLSVRIEGDAHLVSPDFVLEKFKTASRTVPAATAPVVSVDTSIMEQVDADEA 710 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + I E+ ED + R+RR+ + + D + Sbjct: 711 LQDEEEAIVAVEAAEDDAPQDDKPKRKRRRRRRRKSGNGDQAQAGENGEDTSDDQDQPKE 770 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 D++ + E ++ E P Sbjct: 771 EADEALEADSEAEVPAAEDVKEKKPSRTRTRSRSRKPKSKQ 811 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 80/146 (54%), Positives = 95/146 (65%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A ++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDEEKPSKPKRSRRS 120 Query: 121 EEVAPIANFSQETEEESIISANNDVV 146 + A A S E+ +D Sbjct: 121 KSSAKAAKTSSGDAVETKEVGVSDEK 146 >gi|193211693|ref|YP_001997646.1| ribonuclease, Rne/Rng family [Chlorobaculum parvum NCIB 8327] gi|193085170|gb|ACF10446.1| ribonuclease, Rne/Rng family [Chlorobaculum parvum NCIB 8327] Length = 560 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 160/564 (28%), Positives = 287/564 (50%), Gaps = 27/564 (4%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L++ + +E +V ++ + R+ EL E + G+IYL +V +V L+AAFVD G Sbjct: 7 KQLLMNKT-GDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAAFVDIG 65 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 GFL F ++ D +AL+++ + + E D+ + + S E Sbjct: 66 QKSDGFLHFSDVG-----TTSEDYRALVEDDDDDENGGEDEEDEGEAEASSEASAPSREA 120 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 P + +ES A ++ I + +K +LV Sbjct: 121 SRPGNQQKSDGRQESAADARE------------------RRQSYTQMIAQKLKPNDSILV 162 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q++KE G KG+ +T+ +++AGR+ VL+P +SR++ + +R LK++ R + Sbjct: 163 QVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPE 222 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G G I+RT + + +K+D E L+ W + E ++ P L+++E +I +RD Sbjct: 223 -GFGAIIRTVAEMQDETLLKQDLEKLLVKWKQIEEKLQDAKPPQLIFKEDTIISSVLRDS 281 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 D++EI+ + Y E ++++ P + V +E P+F GI ++S+ + Sbjct: 282 LTTDVTEIVANSNSIYTETLNYIQWAAPDMVKNVSLHEGKLPLFEGYGIAKDVESIFSRK 341 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V L S GY+II TEA+V +DVNSGR + E+ +L+TNLEAA EI RQLRLRD+ G+ Sbjct: 342 VWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGGI 401 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM + KN++ V +K L+ DRA+ + +S+FG+++++R+RIR S+++ Sbjct: 402 IVVDFIDMIDAKNSKKVYDAMKTELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGD 461 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA--HNIIVHTHSDVVLYLLNQKRATIV 540 C C G G ++++ + + R + ++ LQ + +H V+ + T + Sbjct: 462 QCPACGGTGVVQARFTTINQVERWLRKFALQQKMPFQQLDLHVSPTVLEPMRESDMKTEM 521 Query: 541 EYEARFGVSINVVIGIELADKLFY 564 ++ + V + + L F Sbjct: 522 KWFLQHMVFVRIKSDESLRSDDFR 545 >gi|325141210|gb|EGC63710.1| ribonuclease E [Neisseria meningitidis CU385] Length = 919 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG +E D + + E++ N + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRSERGDRAAERANEAEIQGRNVQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|83942486|ref|ZP_00954947.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36] gi|83846579|gb|EAP84455.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36] Length = 979 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 257/587 (43%), Positives = 352/587 (59%), Gaps = 4/587 (0%) Query: 136 ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195 + S ++ + S +D K ++Y IQEV+K RQILLVQ+VKEERGNKGAA Sbjct: 220 KDASSKDDSIESVADDDDHDDLRTARKPRPKRYKIQEVVKVRQILLVQVVKEERGNKGAA 279 Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255 +TTYLSLAGRY VLMPNT++G ISRKITN DRK LKEIA ++VP G G+I+RTAGA Sbjct: 280 LTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANEIQVPKGAGLIVRTAGAQ 339 Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 RTK EIKRD+EYL RLW+ +REL L S+AP +YEEG+LIKR+IRDLY ++I E+ V GE Sbjct: 340 RTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGE 399 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 +GYR AKDFMK++MPS+A+ V+ Y + P+F R +E L + V LPS GY++I Sbjct: 400 RGYRIAKDFMKMIMPSHAKNVKLYSETLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGV 459 Query: 376 TEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435 TEALV+IDVNSGR+T+E IE TA +TNLEAA E+ARQLRLRDLAGLIV+DFIDM+E++N Sbjct: 460 TEALVAIDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERRN 519 Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 N +VEK +KE LK DRAR+QVG IS FGL+EMSRQR+R ++E+TT+ C C G G IRS Sbjct: 520 NAAVEKLMKEKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLIRS 579 Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 ++ALSILR +EE + + +++ + +L+NQKR I E R+G+++ + Sbjct: 580 DDNLALSILRQIEEEGTRKRSREVLITAPVGIANFLMNQKREHIAHIEGRYGMAVRIEGD 639 Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 L F +EK +V V S + + + V + +++ Sbjct: 640 PALVSPDFSLEKFKTATRVVTPIEHVVSVDTSIMDEVDDLDV---DPEADADNADNEPSG 696 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 N + G + +R G S+ N + + D + + Sbjct: 697 NGNGGQSQHNGSDDDNDGEGKPKRRRRRRRRRGGKSNGDDAANGEN-NGDSNTNGDNGDS 755 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E A D + + + P ++R K + Sbjct: 756 DAPAETEADTAGAKDDTKTDAAADAASDDAKPQDKPKRTRSRTRKPK 802 Score = 207 bits (525), Expect = 6e-51, Method: Composition-based stats. Identities = 79/158 (50%), Positives = 99/158 (62%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MPKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR AL++E A D+ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALMEEERAYAEAQAAKEDEDEKPKRRTRSRSRS 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 + A T + + ++D ++ ++ V E Sbjct: 121 KSKAEDTVSDDATVSKDADATDSDQINGMQTVDLDDEE 158 >gi|310815579|ref|YP_003963543.1| ribonuclease E, putative [Ketogulonicigenium vulgare Y25] gi|308754314|gb|ADO42243.1| ribonuclease E, putative [Ketogulonicigenium vulgare Y25] Length = 941 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 255/528 (48%), Positives = 342/528 (64%), Gaps = 3/528 (0%) Query: 99 DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 D EA DD + G + P A + + E+E V + Sbjct: 181 DLEAEGDDPSEGLSPMVTVAETPVETPAAEAAADDEDEDDTPDPAHEVETISADDSDDVR 240 Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 V K R+Y IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G Sbjct: 241 PVRKTRMRRYKIQEVIKVRQVMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGG 300 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 ISRKITN DRK LKEIA+ LEVP G G+I+RTAG+ RTK EIKRD+EYLMRLW+ +R L Sbjct: 301 ISRKITNVADRKKLKEIAQELEVPQGAGLIIRTAGSQRTKAEIKRDYEYLMRLWEQIRAL 360 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 L+S AP +YEEG+LIKR+IRDL +I E+IV G++G+R A DFMK++MP R V Sbjct: 361 TLSSNAPAKIYEEGDLIKRSIRDLTSTEIDEVIVEGDEGFRTAYDFMKMMMPGQERSVIH 420 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y D P+F R +E L + V LPS GY++I TEALV+IDVNSGR+T+E IE T Sbjct: 421 YHDQMPLFARYQVEGYLGGMFNPVVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQT 480 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 A +TNLEAA+EIARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+ ++ LK DRAR+QVG Sbjct: 481 ATKTNLEAADEIARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRFRDKLKDDRARIQVGR 540 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 IS FGLLEMSRQR+R ++E+TT+ C++C G G +RS ++ L+I+R +EE ++ + Sbjct: 541 ISGFGLLEMSRQRLRPGMIEATTQPCSHCHGTGLLRSDDNLGLTIIRQLEEEGVRGRSRE 600 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV--- 575 ++VH +V +L+NQKR I E R+G+S+ V I L + IEK +V Sbjct: 601 VVVHAPVGIVNFLMNQKREHIAGIEQRYGMSVRVEADITLVSPDYSIEKLKAATRVVQAA 660 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 V + + + V +D+ + ++ + +Q ++ Sbjct: 661 PAAPTVVTGTAELMEEIIAAEVIEDDIAVVEEEAVAAAPVQTPEGEDD 708 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 77/122 (63%), Positives = 92/122 (75%), Gaps = 3/122 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLIDA+H EETRVVV+ N+VE+ DFE K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MSKKMLIDATHAEETRVVVVDGNKVEDFDFERAAKRQLSGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHP YYQIP +DR+ALL E D+ A +DDV+ D ++ S Sbjct: 61 YGGNRHGFLAFAEIHPSYYQIPVADREALLAEEMA---DAHADSDDVSPADDQPTDEKSG 117 Query: 121 EE 122 E+ Sbjct: 118 EK 119 >gi|198284647|ref|YP_002220968.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667189|ref|YP_002427321.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249168|gb|ACH84761.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519402|gb|ACK79988.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 496 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 138/565 (24%), Positives = 242/565 (42%), Gaps = 72/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +E RV ++ + ++EL E + + GNIY V RV P +QAAFVD Sbjct: 1 MSEELLINVT-PQEIRVALVDNGVLQELQVERSGHRGLVGNIYKGVVRRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +I D + + E++I +V Sbjct: 60 VGLERTAFLHAADIQ--------DDSEEIQGETDIEPRAGHHEVRNVCALLREGQEVLVQ 111 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 P+ + G+ +Y + R + Sbjct: 112 VIKDPVGS-------------------------KGARLSTRITLPGRYLVYMPFVPRIGV 146 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + L + ++P G I + L E + Sbjct: 147 STRIESPEERMR---------LKEQLKSVIPPEEGGGYI---------IRTLAEGVTETD 188 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + R + + S AP ++ + NL R +R Sbjct: 189 FSGDIDFLRR----------LWDSIRARLER----------SPAPGQIHSDLNLALRMMR 228 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ +I + + + A F + ++P A + Y P+F +E +++ Q Sbjct: 229 DVMSDNIQRVRIDSRETVDAALTFCQGVIPEVADRIEHYSGERPLFDLYNVEDEIERALQ 288 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 + VTL S Y+II+QTEAL ++DVN+G E+T +TNLEAA IARQ+RLR++ Sbjct: 289 SRVTLKSGAYLIIDQTEALTTVDVNTGGFVGRRNQEETIFKTNLEAAAAIARQMRLRNIG 348 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++++ R V++ L++S++ DR R + IS+ GL+EM+R+R R S+ ++ Sbjct: 349 GMIIIDFIDMEDEEHKRRVQRALEKSIQSDRTRCNITQISSLGLVEMTRKRTRESLRQTL 408 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC G G++++ ++ ILR + Y A +V V+ LL+++ ++ Sbjct: 409 CEPCPYCHGRGFMKTAETICYEILREIVRETRAYPAERFVVLASPQVMEKLLDEESTSLA 468 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E G I V + + I Sbjct: 469 ALEEFIGRPIKVQAEATYTQEQYDI 493 >gi|119503336|ref|ZP_01625420.1| DNA polymerase III delta prime subunit [marine gamma proteobacterium HTCC2080] gi|119460982|gb|EAW42073.1| DNA polymerase III delta prime subunit [marine gamma proteobacterium HTCC2080] Length = 973 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 201/580 (34%), Positives = 317/580 (54%), Gaps = 20/580 (3%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ + + + I++V+K ++VQ+ KEERG KGAA+TTY+SLAGRY VL Sbjct: 71 KEIAHQYYRSTAPEGEGKTRIKDVLKEGTEVIVQVDKEERGTKGAALTTYISLAGRYMVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN K ISR+I + L++ L +P GMGVI+RTAG R+ E++ D +YL+ Sbjct: 131 MPNNPKAGGISRRIEGDDRTE-LRDALSQLNIPDGMGVIIRTAGVGRSPEELQWDLDYLL 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 +LW ++ + + AP L+Y+E ++I R+IRD D+ ++++ + +++A DF+ ++M Sbjct: 190 QLWSSISSASDENKAPVLLYQESDVIIRSIRDYLRDDVDQVLIDDKAAWQQAHDFVTMVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P YA+ +R YED P+F R +E Q++S Q EV LPS G ++I+ TEAL+SID+NS R+ Sbjct: 250 PKYAQRIRYYEDATPLFNRFQVEGQIESAFQREVRLPSGGSIVIDPTEALISIDINSARA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE TALQTNLEAA+E+ARQLRLRD+ GL+V+DFIDM KN R+VE +++++L+ Sbjct: 310 TKGSDIEQTALQTNLEAADEVARQLRLRDMGGLVVIDFIDMNANKNQRAVENRIRDALEV 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E + VC C G G IR S+AL+ILR ++E Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGEISAMVCPRCTGKGTIRDTKSLALAILRLLQE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + +V +LLN+KR+ + + E+ GV + ++ + F + + Sbjct: 430 EAAKDRTGEVRAVVPVEVAAFLLNEKRSAVNDIESSSGVRVLIIPNPHMETPHFDVIRLR 489 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + +T + P + P P + + V+ E Sbjct: 490 DDEVEESTTLSYEVAIETPD-PIAVRDEVSAIPAAPQPLVRGVTPQEPAPVAAEPEAPAP 548 Query: 630 KRRRRRRRRRPATDHHDA----------------GVVSDVSSIQNVIDDSFDMYMEPSDI 673 R +++P T+ +D+ ++ D + EP + Sbjct: 549 MAETRDIKQQPKTESPQKTGILTRMWGALFAPAPSEEADIETLTETEDSGHEESSEPKEN 608 Query: 674 TNHNLLENGAHGFT--ENYDVSIPPVSTPEMESSNSSSDP 711 N G T D + T E++ + +D Sbjct: 609 ANRQRRSRGGRNRTRSRRPDSDVQAEDTDEVDQTTVDADE 648 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/78 (52%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KMLI+A+ EE RV ++ R+ +LD E+ + K N+Y AK+TRVEPSL+AAFVD+G Sbjct: 2 KKMLINATQPEEIRVAIVDGQRLNDLDIENRSRGSTKANVYKAKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLP EI YY+ Sbjct: 62 AERHGFLPLKEIAHQYYR 79 >gi|56696769|ref|YP_167130.1| ribonuclease [Ruegeria pomeroyi DSS-3] gi|56678506|gb|AAV95172.1| ribonuclease, Rne/Rng family [Ruegeria pomeroyi DSS-3] Length = 993 Score = 333 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 273/588 (46%), Positives = 366/588 (62%), Gaps = 2/588 (0%) Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193 + S ++ + S E+ K R+Y IQEV+K RQ++LVQ+VKEERGNKG Sbjct: 247 GKADAASKDDSIESIAEEDDAEDLRPARKPRARKYKIQEVVKVRQVMLVQVVKEERGNKG 306 Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253 AA+TTYLSLAGRY VLMPNT++G ISRKITN VDRK LKEIA ++VP G G+I+RTAG Sbjct: 307 AALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIAAEMDVPQGAGLIVRTAG 366 Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313 A RTK EIKRD+EYL R+W+ +REL L S+AP +YEEG+LIKR+IRDLY +DI E++V Sbjct: 367 AKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVE 426 Query: 314 GEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVII 373 GE GYR AKDFMK++MPS+A+ V++YED P+F R +E L+S+ V L S GY++I Sbjct: 427 GEGGYRIAKDFMKMIMPSHAKNVQRYEDQLPLFARFQVESYLNSMFNPTVQLKSGGYIVI 486 Query: 374 NQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALV+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+ Sbjct: 487 GVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDER 546 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 KNN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR+R ++E+TT+ C C G G I Sbjct: 547 KNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCPSCHGTGLI 606 Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 RS ++ALSILR +EE + + ++V + YL+NQKR I + EAR+G+S+ + Sbjct: 607 RSDDNMALSILRQIEEEGTRRRSREVLVRCPVGIANYLMNQKREHIAQIEARYGLSVRIE 666 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L F +EK V + D I+ E + + Sbjct: 667 GDAHLVSPDFSLEKFKTATRSVPQVQAPVVSVDSRLMD-QIDADEAFEEEDEAEEVRTEP 725 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + RKRRRRRRR+ D+ D I + + + Sbjct: 726 RGETAGEGDGDGKPKRKRRRRRRRKNGGNGGEDSTADGDSGEIGDEAAEDAADAAPEAAE 785 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E + + V+ E E+ + P K+TR K+ Sbjct: 786 DAAVTEAEAEPAAAEGGEAEVEAVAEAEAEAEAPAKTP-RKRTRTRKK 832 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 81/152 (53%), Positives = 100/152 (65%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++E +A +D G S Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKARDEDEEGGKSRSKPKRSR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDV 152 A + ++ + + +S +E + Sbjct: 121 SRSRSKAESLRSSDPVETMDVSETEISGMETI 152 >gi|288940467|ref|YP_003442707.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180] gi|288895839|gb|ADC61675.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180] Length = 1001 Score = 333 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 204/577 (35%), Positives = 314/577 (54%), Gaps = 4/577 (0%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ E K + I+E ++ + ++VQI KEERGNKGAA+TT++SLAGRY VL Sbjct: 71 KEIARSYFEPDSVKPGSRVSIKESVREGREVVVQIDKEERGNKGAALTTFISLAGRYLVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + +SR+I + L++ L++P MG+I+RTAG + E++ D +YL+ Sbjct: 131 MPNNPRAGGVSRRIEGQDRTE-LRDAMSQLQLPEDMGMIVRTAGVGKNVEELQWDLDYLL 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 +LW + + AP L+Y+E ++I R+IRD DI EI++ Y A++F++ +M Sbjct: 190 QLWQAIVSSGESRKAPFLIYQESDVIIRSIRDYLRVDIGEIVIDDRTVYERAENFIRQVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + +R Y+D P+F R IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 250 PQNLKKLRLYQDEVPLFTRYQIETQIESAFQREVRLPSGGSIVIDHTEALTSIDINSARA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL V+DFIDM KN R+VE +L+E+LK+ Sbjct: 310 TKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMGPPKNQRAVEDRLREALKQ 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQV IS FGLLEMSRQR+R S+ ES+ ++C CKG G IR S+ALSILR +EE Sbjct: 370 DRARVQVARISRFGLLEMSRQRLRPSLGESSQQICPRCKGQGTIRGVESLALSILRILEE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ + + V +LLN+KR I++ E R V I ++ + + IE+ Sbjct: 430 EAMKESTQRLQAQLPVSVATFLLNEKRRAILDIEQRQEVEILLIPNEHIQTPEYRIERIR 489 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVI 628 + S + + + + P E + I ++ + T Sbjct: 490 AQDIAGKAPEETPSYTIKAVPEPSAAAPHYAKLGQPARIEEPAVKLIAPSVPAPRQTERP 549 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSI--QNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R+ ++ + + + +++ + +D +G+ Sbjct: 550 RPTPPTTVSRKETERAESESLLKRIWTGLFLSRSNEAGSAQPQAADKRAVAGGRSGSKAG 609 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +E S P + SS D + + R+ Sbjct: 610 SEPSAASRPQERATNATGTASSGDESGRSRQARDERR 646 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 50/77 (64%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV + + LD ES ++Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQPEELRVATVDGQLLYNLDIESPGREQKKANIYKGVITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 62 AERHGFLPLKEIARSYF 78 >gi|257093129|ref|YP_003166770.1| Rne/Rng family ribonuclease [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045653|gb|ACV34841.1| ribonuclease, Rne/Rng family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 951 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 207/650 (31%), Positives = 320/650 (49%), Gaps = 22/650 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D D+ I + ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQKLIDLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + P + I+E ++ Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEVSRAFFQPGVETSRATIKEALREGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR++ + L+E+ L+VP GM +I RTA R E++ D YL++ Sbjct: 130 PNNPRGGGVSRRVEGTERTE-LREVMDQLQVPPGMSLIARTAAIGRNGEELQWDLNYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + + A L+Y+EG+L+ RAIRD + DI EI++ ++ Y +A+ FM +MP Sbjct: 189 LWKAIEDAAQQQKGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDEVYDQAQQFMSHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +++Y D P+F R IE Q++S + +V LPS G ++I+ TEALVS+DVNSGR+T Sbjct: 249 GTVNRIKRYRDDVPLFSRFQIEHQIESAYSRQVGLPSGGAIVIDHTEALVSVDVNSGRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL+TNLEAAEE+ARQLRLRDL GLI++DFIDME +N R VE +++++L+ D Sbjct: 309 RGADIEETALKTNLEAAEEVARQLRLRDLGGLIIIDFIDMENARNQREVENRIRDALRFD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGLLE+SRQR+R ++ E++ C C G G+IRS S AL ILR +EE Sbjct: 369 RARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCSGTGHIRSTESAALHILRILEEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + DV +LLN+KR + E R VSI ++ I L + + Sbjct: 429 AMKDNTAAVHAQVPVDVATFLLNEKRTDVQAVELRHKVSILLIPNIHLETPQHSVVRVRH 488 Query: 571 VQALVNTGHKVG------SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + + A S I + + + + Sbjct: 489 DELAQDDLQQASYRMVDMPTNDAGSEAPAAGDGRAARPEAAIKGVTTAQPAPLVGEPQPA 548 Query: 625 TGVIRKRRR-----------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 RR+ + + D+ P Sbjct: 549 AAEPPATSGNRFLTRILSWFRRKPEAAPPAVAEPVPPRRSGPPREAQRDARRSGPRPPRR 608 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + G ++ + P + P + S ++ R + + Sbjct: 609 DEARDVPETRAGREQSDASAQPTQAVPAVARSEPQRPRTPREPREAREPR 658 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 45/109 (41%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY A +TR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ ++Q +A +KE+ + D G+ Sbjct: 62 AERHGFLPFKEVSRAFFQPGVETSRATIKEALREGQELIVQVDKDERGN 110 >gi|226939997|ref|YP_002795070.1| ribonuclease E [Laribacter hongkongensis HLHK9] gi|226714923|gb|ACO74061.1| Probable ribonuclease E [Laribacter hongkongensis HLHK9] Length = 1068 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 213/632 (33%), Positives = 312/632 (49%), Gaps = 19/632 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+ Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP Sbjct: 70 FKEVSRTYFKNHEGGRPRIQDVLSEGQELIVQVEKDERGNKGAALTTYVSLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I L+E+ L+ P GM +I RTAG R+ E++ D YLM+L Sbjct: 130 NNPRGGGVSRRIEGEER-NELRELMSQLQTPQGMSLIARTAGIGRSLEELQWDLNYLMQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W V A AP L+++EG+L+ RAIRD + +I EI+V E+ + +A+ FM +MP Sbjct: 189 WTAVESAASAQTAPFLIFQEGSLVIRAIRDYFQPEIGEILVDTEEIWDQARQFMSHVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q+++ +V LPS G ++I+ TEALVSIDVNS R+T+ Sbjct: 249 NVNRIKLYKDDVPLFSRFQIEHQIETAFSRQVALPSGGAIVIDHTEALVSIDVNSARATK 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE TA TNLEAA+EIARQLRLRDL GL+V+DFIDME KN R VE++LK++LK DR Sbjct: 309 GADIETTACNTNLEAADEIARQLRLRDLGGLVVIDFIDMENPKNQREVEQRLKDALKADR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ S+ E++ C C G G+IR S AL+ILR + E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLQPSLGETSHIPCPRCSGTGFIRGTESSALNILRILTEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + EAR V I ++ I L + I + Sbjct: 429 MKENTGAVHAQVPVDVATFLLNEKRADLFGIEARLKVGIVLIPNIHLETPHYKIVRVRRD 488 Query: 572 QALVNTGHKVGSD----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + L + + + + P + + Q + E+ V Sbjct: 489 ELLEQAEEFFAPSYTLVKEPEGDAVDTYLQDRSKPERPQAAVQGITPQQPAPEARETRPV 548 Query: 628 IRKRRRR-----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 R R +P + V + + Sbjct: 549 AAPVAARPGLLARVLGWLRGDSQPQAEAPAPAVQGSREARKPASGSRGGNRAAAPAAAGD 608 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + ++ E E+ N + Sbjct: 609 ANQKRDRKQSRAKHEEQRRRQQDGETENGNGN 640 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 55/78 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 62 TDRHGFLPFKEVSRTYFK 79 >gi|296840699|ref|ZP_06863242.2| ribonuclease E [Neisseria polysaccharea ATCC 43768] gi|296840177|gb|EFH24115.1| ribonuclease E [Neisseria polysaccharea ATCC 43768] Length = 927 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVSEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DIEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG +E D + + E++ N + + P + Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRSERGDRAAERANEAEIQDRNIQPAATVADAAPSETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 VQTGKRRR 684 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87 >gi|163741253|ref|ZP_02148645.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis 2.10] gi|161385606|gb|EDQ09983.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis 2.10] Length = 978 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 276/601 (45%), Positives = 369/601 (61%), Gaps = 3/601 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 AQ S + D + A + + + + ++ S ++ Sbjct: 204 EAQDASSENGEAEGAADTATTEADDAADDADADDSADTDAAADATAKDENIESVADEDDS 263 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 V K R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT+ Sbjct: 264 EDIRPVRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTA 323 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKITN DRK LK+IA L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ Sbjct: 324 RGGGISRKITNAADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQ 383 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +REL L S+AP +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ Sbjct: 384 IRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAK 443 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+ Y+D P+F R +E L ++ V L S GY++I TEALV+IDVNSGR+T+E Sbjct: 444 NVKNYQDQLPLFARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGS 503 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+ Sbjct: 504 IEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARI 563 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS FGL+EMSRQR+R ++E+TT C +C G G IRS S+ALSILR +EE + Sbjct: 564 QVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRR 623 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 + ++V + YL+NQKR I + E R+G+S+ + L F +EK + Sbjct: 624 RSREVLVRCPVSIANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFKTASRV 683 Query: 575 VNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 V S D + DEA + S++ E E RKR Sbjct: 684 VPVATAPVVSVDTSIMDQVDADEASDEADEAEVEANDSDAAEVQAAGDEGEGDNKPKRKR 743 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 RRRRRR+ D D+ + + + S D + +D + A + + Sbjct: 744 RRRRRRKSSGADGDDSNNAAQGDANADDQKASDDAAADDADAQAEPAEGSDAKEAEGDGE 803 Query: 692 V 692 V Sbjct: 804 V 804 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 78/143 (54%), Positives = 92/143 (64%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A D+ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRR 120 Query: 121 EEVAPIANFSQETEEESIISANN 143 S + E +S Sbjct: 121 GRTKAADVKSADVVETKDVSPET 143 >gi|187477607|ref|YP_785631.1| ribonuclease E [Bordetella avium 197N] gi|115422193|emb|CAJ48717.1| ribonuclease E [Bordetella avium 197N] Length = 1015 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 202/587 (34%), Positives = 309/587 (52%), Gaps = 30/587 (5%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR++ Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L++ L+VP GM +I RTAG R E++ D YL++LW + A ++ AP Sbjct: 145 EDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLAYLLQLWTAIDGAARDNAAP 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ RAIRD + +I EI++ ++ +A FM ++MP + V++Y D P+ Sbjct: 204 ILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAAAFMSVVMPDNVQRVKRYRDDTPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ + V LPS G V+I+ TEALV++DVNS RSTR IE+TAL+TNLE Sbjct: 264 FSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTRGADIEETALRTNLE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L DRARVQ+G IS FGL+ Sbjct: 324 AADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R ++ E + C C G G IR S AL +LR +EE ++ + Sbjct: 384 ELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALHVLRLLEEEAMKENTAAVHAQVPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +LLN+KRA I + EAR V++ ++ L +IE+ + + Sbjct: 444 DVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPHHHIERLRHDDPRLEETKTSFELA 503 Query: 586 QAPSYDKNIECVWQD------------EALLPIPKSESLEDIQDNI-------------- 619 +AP+ D Q+ P P S + Sbjct: 504 EAPATDVTWSPREQEVKARPEALVKGITPAQPAPVSTPAPAAKPAEGSGFGGLFKRLINW 563 Query: 620 --VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 S E+ + + +R G + + + E + Sbjct: 564 ISGSSETKPAEKSAEQSKRPSGNRAKRAQDGQERRGERHGSDRNRNRRETSEGQEQRRGA 623 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSS-DPIVKKTRWWKRRK 723 ++ N ++P ++ + + + + T R+ Sbjct: 624 RRQDETRTEQRNEQRAVPEQRAESRQNRTTENRNAEARNTETRDNRE 670 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 11/141 (7%), Positives = 31/141 (21%), Gaps = 2/141 (1%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + S +++ + E + + +RR RR+ Sbjct: 567 SSETKPAEKSAEQSKRPSGNRAKRAQDGQERRGERHGSDRNRNRRETSEGQEQRRGARRQ 626 Query: 640 P--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 T+ + ++ + + + + T T Sbjct: 627 DETRTEQRNEQRAVPEQRAESRQNRTTENRNAEARNTETRDNRENLAAETRALAPETDGE 686 Query: 698 STPEMESSNSSSDPIVKKTRW 718 TP + ++ Sbjct: 687 GTPRNGRNRRGRGRGRREDGV 707 >gi|260433831|ref|ZP_05787802.1| ribonuclease E [Silicibacter lacuscaerulensis ITI-1157] gi|260417659|gb|EEX10918.1| ribonuclease E [Silicibacter lacuscaerulensis ITI-1157] Length = 924 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 264/561 (47%), Positives = 351/561 (62%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151 E + ++ AD D P+ E A + + + + + + S +D Sbjct: 178 EESKTGEPDDSAADADLGVDAEEPSSPLEPEDAGDGSDEEVAAKPDAAAKDESIESVADD 237 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMP Sbjct: 238 DDSEDIRPPRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMP 297 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 NT++G ISRKITN DRK LKEIA ++VP G G+I+RTAGA RTK EIKRD+EYL RL Sbjct: 298 NTARGGGISRKITNAADRKKLKEIASEIDVPKGAGLIIRTAGAKRTKSEIKRDYEYLQRL 357 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +REL L S+AP +YEEG+LIKR++RDLY ++I E++V GE GYR AKDFMK++MPS Sbjct: 358 WEQIRELTLKSIAPAKIYEEGDLIKRSVRDLYNREIDEVLVEGEAGYRIAKDFMKMIMPS 417 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A+ V++YED P+F R +E L S+ V L S GY++I TEALV+IDVNSGR+T+ Sbjct: 418 HAKNVKRYEDQLPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATK 477 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+LK+ LK DR Sbjct: 478 EGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNLAVEKRLKDKLKTDR 537 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+QVG IS FGLLEMSRQR+R +LE+TT+ C C G G IRS ++AL+ILR +EE Sbjct: 538 ARIQVGRISGFGLLEMSRQRLRPGMLEATTQPCPSCHGTGLIRSDDNMALAILRQIEEEG 597 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + + ++V + YL+NQKR I + EAR+G+S+ V + L F +EK Sbjct: 598 TRRRSREVLVRCPVSIANYLMNQKREHIAQIEARYGLSVRVEGDVHLVSPDFSMEKFKTA 657 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 V + A D + E + + + + +K Sbjct: 658 TRAVPEVAAPVVSASASLMDLIDSEEDEIEDDAVASEQSEQPEEEAKPKRKRRRRRRKKS 717 Query: 632 RRRRRRRRPATDHHDAGVVSD 652 + A A ++ Sbjct: 718 GGNGEQPEAANGEDKADAATE 738 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 77/135 (57%), Positives = 90/135 (66%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEEQAYAEAMRARDEAEETKPRKRRSRSRT 120 Query: 121 EEVAPIANFSQETEE 135 + ET E Sbjct: 121 KASEVETADPVETLE 135 >gi|254511652|ref|ZP_05123719.1| ribonuclease, Rne/Rng family protein [Rhodobacteraceae bacterium KLH11] gi|221535363|gb|EEE38351.1| ribonuclease, Rne/Rng family protein [Rhodobacteraceae bacterium KLH11] Length = 918 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 261/567 (46%), Positives = 344/567 (60%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 ++ E V + E A E ++ + + + S + Sbjct: 205 EQPAEEVAAEEVVEAAGEISEAENDGTAEAETEADDEEADSEGKQTDATAKDASIESVAD 264 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + K R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLM Sbjct: 265 EDDSEDIRPPRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 324 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PNT++G ISRKITN DRK LK+IA ++VP G G+I+RTAGA RTK EIKRD+EYL R Sbjct: 325 PNTARGGGISRKITNAADRKKLKDIAAEIDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQR 384 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ +REL L S+AP +YEEG+LIKR+IRDLY +DI E++V GE GYR AKDFMK++MP Sbjct: 385 LWEQIRELTLQSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVEGEGGYRIAKDFMKMIMP 444 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 S+A+ V++YED P+F R +E L + V L S GY++I TEALV+IDVNSGR+T Sbjct: 445 SHAKNVKRYEDALPLFARYQVESYLAGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRAT 504 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK+LK+ LK D Sbjct: 505 KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNSAVEKRLKDKLKTD 564 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+R +LE+TT+ C C G G IRS ++ALSILR +EE Sbjct: 565 RARIQMGRISGFGLLEMSRQRLRPGMLEATTQPCPACHGTGLIRSDDNMALSILRQIEEE 624 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + ++V + +L+NQKR I + EAR+G+S+ + + L F +EK Sbjct: 625 GTRRRSREVLVRCPVSIANFLMNQKREHIAQIEARYGLSVRIEGDVHLVSPDFSLEKFKT 684 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 +V A D ++ A P E Sbjct: 685 ASRVVPEATAPVVSVDASLMDMVDATDEEESAEDTPPVQGEEESKPKRKRRRRRRKKGAG 744 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQ 657 + A + V S + Sbjct: 745 NGDAPEGTTDEGEAAAAETDAQVDSTE 771 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 98/154 (63%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEADEAKPKKRRSRSRS 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 + +N ET + S + + + + + Sbjct: 121 KAADVKSNDPVETMDVSSEPSGMETIDLDDGEQS 154 >gi|325522996|gb|EGD01422.1| ribonuclease E [Burkholderia sp. TJI49] Length = 586 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 199/539 (36%), Positives = 297/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + N P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 RAIEAASQNGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSPAPQR 549 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|189423540|ref|YP_001950717.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ] gi|189419799|gb|ACD94197.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ] Length = 503 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 170/565 (30%), Positives = 285/565 (50%), Gaps = 65/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA++++I+ + ETR+ ++ + EL E +K I GNIY +V RV P +QAAFVD Sbjct: 1 MASELVINVT-AHETRISLIEKGTIAELYIERTREKGIVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +D ++E + D H + Sbjct: 60 IGLEKAAFLY------------VADVFDAIEEYENLMDGGKKEDHHDDSSDQEFKVLHPI 107 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E++ ++ Q L Sbjct: 108 EDL--------------------------------------------------LQEGQEL 117 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KE G KGA +T+++SL GR+ V MP ISR+I +R+ L+EI L Sbjct: 118 LVQVSKEPIGTKGARITSHISLPGRHVVYMPTVDHVG-ISRRIEEEEERERLREIVDRLR 176 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G G I+RTA +T+ +++ D EYL ++W + + AP L++ + +++++ +R Sbjct: 177 QP-GCGFIVRTASEGKTEEDLRADMEYLAKIWAEIVNKKEKATAPCLIHADLDVVQKVVR 235 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ D++ I++ + + F+ MP + Y++ PIF + G+EV++ Sbjct: 236 DIVTDDVNRIVIDSKADHDRIVQFISTFMPKMKSSIELYDEEEPIFDQYGLEVEISRALG 295 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR++ Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 355 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+++LK D+++ + IS GL+EM+R+R+R S+ Sbjct: 356 GIIIIDFIDMEKEVNREKVYAALEDALKSDKSKTNILKISELGLVEMTRKRVRESIGRMM 415 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S++++ I R + +L +++ H V L +++R + Sbjct: 416 CEPCPYCEGRGYVKSKTTICHEIFRELRREMLDIRGTKVLLSVHPQVADLLYDEERRGLE 475 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E +F + V + F + Sbjct: 476 ELEKKFKKRVTVRAKPGFHQEQFEV 500 >gi|114762878|ref|ZP_01442310.1| ribonuclease, Rne/Rng family protein [Pelagibaca bermudensis HTCC2601] gi|114544488|gb|EAU47495.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. HTCC2601] Length = 985 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 268/653 (41%), Positives = 369/653 (56%), Gaps = 21/653 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P SD A E +A+ + + + + ++ A ++ + + Sbjct: 182 PVSDEPAQAGEEAVAKPAEQDTSAPAAE---ETVSQDTSDDDADDSDDDDTDDGDDHAGT 238 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + S +D K R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLS Sbjct: 239 EDSIESVADDDTEEEIRPKRKPRPRKYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLS 298 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPNT++G ISRKITN DR LK+IA ++VP G G+I+RTAGA RTK EI Sbjct: 299 LAGRYCVLMPNTARGGGISRKITNAADRSKLKQIATEIDVPKGAGLIIRTAGAKRTKTEI 358 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRD+EYL RLW+ +R L L SVAP +YEEG+LIKR+IRDLY ++I E+ V G++GYR A Sbjct: 359 KRDYEYLQRLWEQIRALTLQSVAPAKIYEEGDLIKRSIRDLYNREIDEVHVEGDRGYRIA 418 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 KDFMK++MPS+A+ V+ Y DP P+F R +E L S+ V L S GY++I TEALV+ Sbjct: 419 KDFMKMIMPSHAKNVKHYVDPMPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEALVA 478 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK Sbjct: 479 IDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEK 538 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 K+K+ LK DRAR+QVG IS FGLLEMSRQR+R ++E+TT+ C C G G +RS ++AL Sbjct: 539 KIKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCHACHGTGLVRSDDNMAL 598 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +ILR VEE + + +++ + YL+NQKR + EAR+G+++ + + L Sbjct: 599 NILRQVEEEGTRRRSREVLLKVPVGIANYLMNQKREHVAMIEARYGMAVRIEGDLHLVSP 658 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP--------KSESLE 613 F +EK V D+ E +E ++E+ Sbjct: 659 DFTMEKFKTATRNVAEVLAPVVSVDTSLMDQIDEDALAEEDEDESTEDSGSTGSETENGA 718 Query: 614 DIQDNIVSEESTGVIRKRR----------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 + + G + R ++ + + G +D + +S Sbjct: 719 ENNSDSGENGDNGDDEGKPKKRRRRRRRSRSKKSNGEGENGSENGADNDSGKGDSDNGES 778 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E D P T S +V +T Sbjct: 779 GTDTPSDAATETTGEATTEEVAAAETDDAPAKPKRTRTRSRSRKPKADVVTET 831 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 82/163 (50%), Positives = 98/163 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++E ++E D S Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAEAEEEEDQPKSKRSRSRRSRSR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKK 163 S++ + S + + ED P Sbjct: 121 TSSKAEKARSEDKTASADPSEIKGMETIDLGEDEIPDEDAPSS 163 >gi|167855429|ref|ZP_02478194.1| ribonuclease E [Haemophilus parasuis 29755] gi|167853423|gb|EDS24672.1| ribonuclease E [Haemophilus parasuis 29755] Length = 985 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 209/643 (32%), Positives = 332/643 (51%), Gaps = 17/643 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I+++I+ ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPQGYVFQGRPNIKDIIQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLD-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+TR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRATR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q G IS FGLLEMSRQR+ S+ E+++ VC C+G G IR S+ALSILR +EE Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + ++ YLLN+KR I + E R V + VV + F + + Sbjct: 431 IKENSVQVHAIVPVEIASYLLNEKRKAISDIEKRHDVQVIVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEESTGVIRK 630 + + + + Q + +I +EAL+ K ++E + + Sbjct: 491 EIVPTLSYDLAKRYQEQDEENHIHHHHSEEALVSRNKPVITVESVLQSSELNLQPAPTPV 550 Query: 631 RRRR---------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + + A++ + +N + +P+ Sbjct: 551 EPAKPSLISRIIAKIKAMFASEEKEPEKKQGKGKARNQRERRQQRREKPNRNERQERKNT 610 Query: 682 GAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIVKKTRWWKRRK 723 E V + P E+ E S P ++ + +RR+ Sbjct: 611 VVEATKEAEVVPVEPKKRREIVEEVAGVSVPQQREAKVAERRQ 653 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|269214749|ref|ZP_06158797.1| ribonuclease E [Neisseria lactamica ATCC 23970] gi|269209212|gb|EEZ75667.1| ribonuclease E [Neisseria lactamica ATCC 23970] Length = 659 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 208/651 (31%), Positives = 309/651 (47%), Gaps = 33/651 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 7 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 67 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 186 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 246 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 425 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEEST-- 625 + ++ + E + ++++ Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545 Query: 626 --------------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 K RR+ +R A + Q Sbjct: 546 DSFKAWLKRIFGGTSETPAAAEPPKTHFRRQPQRAAPHRQPPP---KPAPRQQARRRQGG 602 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 G + P S + + S P T Sbjct: 603 SARNGGFQRQSGRQSGGGTRNPQRQRQPPQPQSPKRTQRRSGSRKPRSPNT 653 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 38/75 (50%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG + Sbjct: 1 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLPF E+ Y+ Sbjct: 61 RHGFLPFKEVSRSYF 75 >gi|86139907|ref|ZP_01058472.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193] gi|85823325|gb|EAQ43535.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193] Length = 1046 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 266/612 (43%), Positives = 376/612 (61%), Gaps = 3/612 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P ++ ++ + A+ S D + + + + + Sbjct: 250 PVAEEASVSEAPVAAEASSGDAVIQSAGSDDANADTDTAAGDDSGESEEEAKAPSDASAK 309 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + S ++ K R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLS Sbjct: 310 DESIESVADEDDSEDIRPARKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLS 369 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPNT++G ISRKITN VDRK LK+IA ++VP+G G+I+RTAGA RTK EI Sbjct: 370 LAGRYCVLMPNTARGGGISRKITNAVDRKKLKDIATEIDVPSGAGLIVRTAGAKRTKAEI 429 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRD+EYL RLW+ +REL L SVAP +YEEG+LIKR+IRDLY ++I E++V GE+GYR A Sbjct: 430 KRDYEYLQRLWEQIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIA 489 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 KDFMK++MPS+A+ V+ Y++ P+F R +E L + V L S GY++I+ TEALV+ Sbjct: 490 KDFMKMIMPSHAKNVKNYQETLPLFARFQVESYLGGMFNPTVQLKSGGYIVIDTTEALVA 549 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSGR+T++ IE+TAL TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VE Sbjct: 550 VDVNSGRATKQSSIEETALNTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEN 609 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++K+ LK DRAR+QVG IS FGL+EMSRQR+R ++E+TT+ C +C G G IRS S+AL Sbjct: 610 RMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCPHCHGTGLIRSDDSMAL 669 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 SILR +EE + + ++V D+ YL+NQKR I + EAR+G+S+ + L Sbjct: 670 SILRQIEEEGTRRRSREVLVRCPIDIANYLMNQKREHIAQIEARYGLSVRIEGDAHLVSP 729 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F +EK +V + S ++ + +P+ E+ + + D+ + Sbjct: 730 DFTLEKFKTATRVVAVSAAPVVSADT-SLMAQVDADEAEADEDELPQDENSDAVADSGSN 788 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E ++RRR RRR+ ++ + S + S ++ + E Sbjct: 789 GEDKPKRKRRRR--RRRKSGNGGENSESDRNGSEAGGGSEASETAAENAAEGEENPASET 846 Query: 682 GAHGFTENYDVS 693 G +E S Sbjct: 847 GEEAGSEEKKTS 858 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 97/170 (57%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A D+ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEESKPSRSRSRGRK 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 + A + E+ A + V + I Sbjct: 121 GSRSKAAKVNSGDAVETKEVAPAKAEPAATPDVTENETPVVSEIAGMETI 170 >gi|74317582|ref|YP_315322.1| RNAse E [Thiobacillus denitrificans ATCC 25259] gi|74057077|gb|AAZ97517.1| ribonuclease E and G [Thiobacillus denitrificans ATCC 25259] Length = 873 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 199/529 (37%), Positives = 285/529 (53%), Gaps = 3/529 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 A+ A+ D D+ I + + I E S+ +A D Sbjct: 10 QAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYGCERHGFLP 69 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 E + E +K Q LLVQ+ K+ERGNKGAA+TTY+SLAGRY VLMP Sbjct: 70 -FKEIARSCLPNGGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRYVVLMPTNP 128 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G +SR+I L++ L++P GM +I RTAG RT E + D YL+ LW Sbjct: 129 RGGGVSRRIEGEER-NELRDTLAQLDIPEGMSLIARTAGIGRTAEEFQWDLNYLLSLWKA 187 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 + + + L+Y+EG+L+ RAIRD + DI EI++ E Y +A+ FM +MP+ Sbjct: 188 IDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAHVMPANVN 247 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+ Y D P+F R IE Q++S +V LPS G ++I+ TEALVSIDVNS R+T+ Sbjct: 248 KVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSARATKGSD 307 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +E TA TNLEAA+E+ARQ+RLRDL GLIV+DFIDME K+ R VE +L+++L DRARV Sbjct: 308 VEQTAYNTNLEAADEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDALHHDRARV 367 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 Q G IS FGLLEMSRQR++ S+ E++ C C G G+IR S AL ILR ++E ++ Sbjct: 368 QTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESSALHILRILQEEAMKE 427 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 + V DV +LLN+KR I E+R V++ ++ I + + I + + Sbjct: 428 NTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITRLRHDELN 487 Query: 575 VNTGHKVG-SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 V + + P + + L +S+ Q + Sbjct: 488 VAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPR 536 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 42/72 (58%), Positives = 52/72 (72%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q KGNIY VTRVEPSL+AAFVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEI 74 RHGFLPF EI Sbjct: 62 CERHGFLPFKEI 73 >gi|91787851|ref|YP_548803.1| ribonuclease G [Polaromonas sp. JS666] gi|91697076|gb|ABE43905.1| RNAse G [Polaromonas sp. JS666] Length = 501 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 152/565 (26%), Positives = 255/565 (45%), Gaps = 67/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ V+EL E ++ + GN+YL KV RV P +Q+ Sbjct: 1 MQQDILINWS-PQETRVAVVELGAVQELQVERTLERGLVGNVYLGKVARVLPGMQS---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I DR A L D+ + Sbjct: 56 ---------AFIDIG--------LDRAAFL-----------------HVADLMSSINSRH 81 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E A + + + ++ I++ + Q + Sbjct: 82 AETELQAAGTSTSASPATVAL--------------------------QPIEKQLFEGQAV 115 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ++K+ G KGA +T +S+AGR V +P + + + L++ + L Sbjct: 116 MVQVLKDPIGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPRQRED--LRQRVQALT 173 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G ILRT G T E+ D YL + W ++E +L +++++ NL++R +R Sbjct: 174 EDMGGGFILRTNGEDATDAELGEDIAYLRKTWSRIKEASLRLPPASVLHQDLNLLQRVLR 233 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + I + + + K F MP+ + ++ Y PIF I+ + Sbjct: 234 DVVVEGTQTIRIDSREQFDNLKAFAVEFMPATVQKLQLYSGERPIFDLYNIDEDIARALG 293 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY+II+QTEAL +IDVN+G +DT +TNLEA++ IARQLRLR+L Sbjct: 294 RRVDLKSGGYLIIDQTEALTTIDVNTGGFVGARNFDDTIFKTNLEASQAIARQLRLRNLG 353 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+++VDFIDM ++ + +V + ++ L +DR + V S GLLEM+R+R R S+ Sbjct: 354 GIVIVDFIDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEMTRKRTRESLAHQL 413 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C+ C G G +++ SV ILR + Q+ V V+ L+++ + Sbjct: 414 CEPCSACMGKGVVKTARSVGYDILREILREARQFNPREFRVVASPKVIELFLDEESQHLA 473 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 G I++ +A + + I Sbjct: 474 GLSDFIGKPISLQAEAAMAQEQYDI 498 >gi|163736219|ref|ZP_02143638.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis BS107] gi|161390089|gb|EDQ14439.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis BS107] Length = 978 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 275/601 (45%), Positives = 369/601 (61%), Gaps = 3/601 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 AQ S + D + A + + + + + ++ S ++ Sbjct: 204 EAQDASSESGEAEGAADTATTEADDAADDADADDSADKDAAADATAKDENIESVADEDDS 263 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 V K R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT+ Sbjct: 264 EDIRPVRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTA 323 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKITN DRK LK+IA L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ Sbjct: 324 RGGGISRKITNAADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQ 383 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +REL L S+AP +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ Sbjct: 384 IRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAK 443 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+ Y+D P+F R +E L ++ V L S GY++I TEALV+IDVNSGR+T+E Sbjct: 444 NVKNYQDQLPLFARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGS 503 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+ Sbjct: 504 IEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARI 563 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS FGL+EMSRQR+R ++E+TT C +C G G IRS S+ALSILR +EE + Sbjct: 564 QVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRR 623 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 + ++V + YL+NQKR I + E R+G+S+ + L F +EK + Sbjct: 624 RSREVLVRCPVSIANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFKTASRV 683 Query: 575 VNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 V S D + DEA + ++ E E RKR Sbjct: 684 VPVATAPVVSVDTSIMDQVDADEASDEADEAEVEANDTDVAEVQAAGDEGEGDNKPKRKR 743 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 RRRRRR+ D D+ + + + S D + +D + A + + Sbjct: 744 RRRRRRKSSGADGDDSNNTAQGDANADDQKASDDAAADDADAQAEPAEGSDAKEAEGDGE 803 Query: 692 V 692 V Sbjct: 804 V 804 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 78/143 (54%), Positives = 92/143 (64%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A D+ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRR 120 Query: 121 EEVAPIANFSQETEEESIISANN 143 S + E +S Sbjct: 121 GRTKAADVKSADVVETKDVSPET 143 >gi|219871374|ref|YP_002475749.1| ribonuclease E [Haemophilus parasuis SH0165] gi|219691578|gb|ACL32801.1| ribonuclease E [Haemophilus parasuis SH0165] Length = 969 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 209/643 (32%), Positives = 332/643 (51%), Gaps = 17/643 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I+++I+ ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPQGYVFQGRPNIKDIIQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLD-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+TR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRATR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q G IS FGLLEMSRQR+ S+ E+++ VC C+G G IR S+ALSILR +EE Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + ++ YLLN+KR I + E R V + VV + F + + Sbjct: 431 IKENSVQVHAIVPVEIASYLLNEKRKAISDIEKRHDVQVIVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEESTGVIRK 630 + + + + Q + +I +EAL+ K ++E + + Sbjct: 491 EIVPTLSYDLVKRYQEQDEENHIHHHHSEEALVSRNKPVITVESVLQSSELNLQPAPTPV 550 Query: 631 RRRR---------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + + A++ + +N + +P+ Sbjct: 551 EPAKPSLISRIIAKIKAMFASEEKEPEKKQGKGKARNQRERRQQRREKPNRNERQERKNT 610 Query: 682 GAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIVKKTRWWKRRK 723 E V + P E+ E S P ++ + +RR+ Sbjct: 611 VVEATKEAEVVPVEPKKRREIVEEVVGVSVPQQREAKVAERRQ 653 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|237808946|ref|YP_002893386.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187] gi|237501207|gb|ACQ93800.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187] Length = 950 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 220/663 (33%), Positives = 333/663 (50%), Gaps = 37/663 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 + A+ D D+ I N ++ A I E S+ +A D + Sbjct: 10 QEEELRVALVDGQRIYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F + I+EVIK ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPENYTFHGRPNIKEVIKEGLEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE GLEVP+GMG+I+RTAG +++ E++ D L+ Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMNGLEVPSGMGLIVRTAGVGKSQEELEWDLNILL 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + W+ ++ + N AP L+++E N+I RAIRD +DI EI++ E + AK ++L+ Sbjct: 189 KHWNAIKTASSNRAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSETIFERAKQHIELVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVNRVKLYKSEIPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++ Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLE+SRQR+R S+ ES+T VC C G G+IR S+ALSILR +EE Sbjct: 369 DRARIQLGRISRFGLLELSRQRLRPSLNESSTHVCPRCSGQGFIRDNESLALSILRLIEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 L+ +I DV YLLN+KR ++ E R V + ++ L F + + Sbjct: 429 EALKDNTEQVIAQVPVDVAAYLLNEKRQAVLTLEQRHKVQLLIIPNTRLETPHFEVSRFR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQD----------EALLPIPKSESLEDIQDNI 619 + +++ +++ Y + + +P P + Sbjct: 489 SGEESDALSYELKTEAPVEEYQPKPQQIIAPAEQPALQGFVAPSVPAPTPVNTPTPVVAK 548 Query: 620 VSEE------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSS--IQNV 659 + E T V ++ + R +P + +S +N Sbjct: 549 PAAEGLLSRLFGFIGALFKGSAETQVAEEKPPVKERPQPRRRDNRNNNRKRNTSYAARNR 608 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 +D + + P V +E + + P + + Sbjct: 609 EEDVAGTAAPEEKTQTTPVRQPRRPRQDRAERTDRPSVRDNNVEKESPAVKPE-RTPKER 667 Query: 720 KRR 722 K R Sbjct: 668 KPR 670 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQEEELRVALVDGQRIYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|260460709|ref|ZP_05808959.1| ribonuclease, Rne/Rng family [Mesorhizobium opportunistum WSM2075] gi|259033286|gb|EEW34547.1| ribonuclease, Rne/Rng family [Mesorhizobium opportunistum WSM2075] Length = 1002 Score = 330 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 296/608 (48%), Positives = 386/608 (63%), Gaps = 2/608 (0%) Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160 A + + D E + + E S ++++ S + + Sbjct: 209 AASVEADVISEPVSQADQGSEATSADNDRGMLEEVSSSHPDDHEIESVGAEDALEEVRNR 268 Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 K +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT++G IS Sbjct: 269 RKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGIS 328 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 RKIT+ VDRK LKE+ LEVP GMGVILRTAG SRTK EIKRD+EYLMRLW+NVR L L Sbjct: 329 RKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTKAEIKRDYEYLMRLWENVRNLTL 388 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 S AP LVYEEG+LIKR++RDLY KDI EI+VSG++GYREAKDFM++LMPS+A++V+ + Sbjct: 389 QSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGDEGYREAKDFMRMLMPSHAKVVQPFR 448 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 D PIF R+GIE QLD + Q +VTL S GY+IINQTEALV+IDVNSGRST+EH IEDTAL Sbjct: 449 DTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEDTAL 508 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE +NNRSVEK+LK+ LK DRAR+QVG IS Sbjct: 509 HTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRSVEKRLKDHLKNDRARIQVGRIS 568 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 +FGL+EMSRQRIR+SVLEST K C +C G G++RS SSVAL ++R++EE+LL+ + +I Sbjct: 569 HFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVALMVVRAIEEFLLKDSRSHIT 628 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN--TG 578 V T + LY+LN KR T+VE E+RFG++I + + + + I +G+ + Sbjct: 629 VRTPAATALYVLNHKRGTLVELESRFGLTITIEADDAVGAQHYAIFRGALAEKPEGFVEL 688 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + + + + + +EA + + Q R R Sbjct: 689 RSLPAYVEPEEPEDEVVIEEDEEAPAQAEQPRHAQPSQHQQPRSGEPRSGEPRSGEPRSG 748 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 P T +G + + + + ++ S+ Sbjct: 749 EPRTGEPRSGEDGEGRDRKRRKRRRRRGGKDRDREHGAPTDGSSISAPAGDFAESVHEAD 808 Query: 699 TPEMESSN 706 + E+ + Sbjct: 809 NDDTETDD 816 Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 94/157 (59%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDASH EETRVVV+R NR+EE DFES+ KKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ D E + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEENEDSEGEDRQSRDRGRRGR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157 + + + + + E + G Sbjct: 121 RRGGKSRDRGEHPRDAGGAESGEANEAAGEARENGDN 157 >gi|329120430|ref|ZP_08249096.1| ribonuclease E [Neisseria bacilliformis ATCC BAA-1200] gi|327462114|gb|EGF08442.1| ribonuclease E [Neisseria bacilliformis ATCC BAA-1200] Length = 954 Score = 330 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 206/659 (31%), Positives = 317/659 (48%), Gaps = 34/659 (5%) Query: 80 QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 ++P + + +L + A+ A+ D D+ I + I E S+ Sbjct: 33 RLPGAIMKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLE 92 Query: 140 SANNDVVSNVE---DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 + D ++ K S + IQ+V+K ++VQ+ K+ERGNKGAA+ Sbjct: 93 ACFVDYGTDRHGFLPFKEVSRAYFQDYEGGKVRIQDVLKEGMQVIVQVEKDERGNKGAAL 152 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 TT++SLAGRY VLMPN +G +SR+I ++ LK+ L VP GM +I RTAG R Sbjct: 153 TTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQE-LKDAMAELNVPRGMSLIARTAGIGR 211 Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316 + E++ DF+YL++LW + E P+L++ E +L+ RAIRD + DI EI+V + Sbjct: 212 SVEELQWDFDYLLKLWQAIEEAGNAHQEPYLLFMESSLLIRAIRDYFRPDIGEILVDNAE 271 Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 Y E +FM +MP+ ++ Y+D P+F R IE Q++S V LPS G ++I+ T Sbjct: 272 VYEEISEFMSYVMPANTGRLKLYQDHTPLFSRFQIEHQIESAFSRSVNLPSGGAIVIDHT 331 Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 EALVSIDVNS R+TR IE+TA +TN+EAAEE+ARQ+RLRDL GLIV+DFIDME K+ Sbjct: 332 EALVSIDVNSARATRGADIEETAFKTNMEAAEEVARQMRLRDLGGLIVIDFIDMENPKHQ 391 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 R VE L+++LKKDRARVQ +S FGLLE+SRQR++ ++ ES+ C C G G IR Sbjct: 392 REVENTLRDALKKDRARVQTAKLSRFGLLELSRQRLKPALGESSHTACPRCAGTGVIRGI 451 Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 S AL +LR ++E ++ + DV +LLN+KRA + E R V++ ++ I Sbjct: 452 ESTALHVLRIIQEEAIKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVMLIPNI 511 Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESL 612 L + + I + + ++ + D E V + + Sbjct: 512 HLENPHYEISRIRTDDVEEDAPPSYKQVAEPEADDTARPFGGERVKAARPEPAVKGVKHT 571 Query: 613 EDIQ--------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + + RR + + + Sbjct: 572 QPAPVFAEPQPESWWDKFKAWFKSLFGGAQQTEPEPQPEPRRNPELRRGQAQNRRRNAGS 631 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 + Q + + + N N N + P + + + Sbjct: 632 GRNPRPNADAQAQDETAGEDSERARRNGNGNGNSGERRNRRPNNERQTPDAAPVQAVET 690 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 40 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYG 99 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 100 TDRHGFLPFKEVSRAYFQ 117 >gi|227326843|ref|ZP_03830867.1| ribonuclease E [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 1108 Score = 330 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 206/678 (30%), Positives = 316/678 (46%), Gaps = 58/678 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++S+++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 428 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMQTPHYSVVRVR 487 Query: 570 PVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPI---------------------- 606 + + + ++ + + + + P Sbjct: 488 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETAPSIAKAAP 547 Query: 607 ---------------------------PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + D D+ +EE +R RR RR Sbjct: 548 AAAKPAEVAQPGLVSRLFSALKSVFASEPAAKAADSVDDKKAEEEKSTEGQRPERRNSRR 607 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + D G + + + D + +T+ EN +E P Sbjct: 608 QGNNRRDRGSRDNRDNREQRDDQRRNKRQNEDAVTDTRAAENAEKSSSEEQPRREPRAER 667 Query: 700 PEMESSNSSSDPIVKKTR 717 + P K + Sbjct: 668 QRRRQDDRRQAPAEAKAQ 685 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|254252866|ref|ZP_04946184.1| Ribonucleases G and E [Burkholderia dolosa AUO158] gi|124895475|gb|EAY69355.1| Ribonucleases G and E [Burkholderia dolosa AUO158] Length = 1022 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 204/613 (33%), Positives = 310/613 (50%), Gaps = 12/613 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 83 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 142 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 143 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 202 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 203 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 261 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 262 RAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 321 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 322 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 381 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 382 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 441 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 442 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 501 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 502 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 561 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A PK E+ S R Sbjct: 562 DDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSAAPQRP 621 Query: 631 RRRRRRRRRPATDHHDAGVVSDVS-----SIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 G + ++ S + + A Sbjct: 622 VEPVAAPAPAPVAAASGGFIGWLNGLFGMSPAPAPAPAAPAPAKEQASRPARERAEKAEQ 681 Query: 686 FTENYDVSIPPVS 698 E S P ++ Sbjct: 682 RGETRRRSQPAIA 694 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 73 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 132 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 133 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 181 >gi|126737545|ref|ZP_01753275.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6] gi|126720938|gb|EBA17642.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6] Length = 1085 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 258/599 (43%), Positives = 357/599 (59%), Gaps = 2/599 (0%) Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167 + + + + + S + + S + + S ++ K R+ Sbjct: 290 SSDSEGDDSATASADESEEEETSAKGKSADASSKDESIESVADEDDSEDIRPPRKPRARR 349 Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN Sbjct: 350 YKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVA 409 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 DRK LK+IA L+VP G G+I+RTAGA RTK EIKRD+EYL R+W+ +REL L S+AP Sbjct: 410 DRKKLKDIATELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAK 469 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ VR Y+D P+F Sbjct: 470 IYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVRHYQDALPLFA 529 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 R +E L + V L S GY++I TEALV+IDVNSGR+T++ IE+TAL TNLEAA Sbjct: 530 RFQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKQGSIEETALNTNLEAA 589 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 EE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+QVG IS FGL+EM Sbjct: 590 EEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEM 649 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 SRQR+R ++E+TT+ CT+C G G IRS S+ALSILR +EE + + ++V + Sbjct: 650 SRQRLRPGMIEATTQPCTHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREVLVRCPVAI 709 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 YL+NQKR I + EAR+G+S+ + + L F IEK +V Sbjct: 710 ANYLMNQKREHIAQIEARYGLSVRIEGDMHLVSPDFTIEKFKTASRIVPVAEAPVVSVDT 769 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-- 645 D+ + E + E ++ + R++ + Sbjct: 770 SIMDQVDAEESEAEEAAAETPVATEESEGEDKPKRKRRRRRRRKSGNGAEDGADGEDQAA 829 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 G + + ++ + +P + G + + + E Sbjct: 830 QEGAAESDDADASAEGETSEEDAKPEKKSRRRRTRGGRGRSKKADNADTEEGAEKPAEE 888 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 75/110 (68%), Positives = 86/110 (78%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A D+ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDDEEDAK 110 >gi|188583163|ref|YP_001926608.1| ribonuclease, Rne/Rng family [Methylobacterium populi BJ001] gi|179346661|gb|ACB82073.1| ribonuclease, Rne/Rng family [Methylobacterium populi BJ001] Length = 1065 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 289/559 (51%), Positives = 377/559 (67%), Gaps = 4/559 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 348 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 407 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKE+ L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL Sbjct: 408 SRKITSAADRKRLKEVVADLDVPEGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 467 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE YREAKDFM++LMP +++V+ Y Sbjct: 468 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 527 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 DP PIF R G+E QLD++ T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 528 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 587 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNLEAAEE+ARQ+RLRDLAGL+V+DFIDMEEK+NNR+VEK+L E+LK DRAR+QVG I Sbjct: 588 LKTNLEAAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRI 647 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQRIR+ VLES++ C +C G+G++R+ SSVAL ILRS+EE LL+ ++HN+ Sbjct: 648 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEALLKSSSHNL 707 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578 ++ T ++V LY+LNQKRA + + E RF V+I + L A F +++G P V Sbjct: 708 VLRTRTEVALYILNQKRAHLYDLEQRFSVAITISADERLAATAAFQLDRGEPAVKHVGPA 767 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 V + + +P Y+ ++DE L E+ + + E + + R Sbjct: 768 TGVRAVAISPVYE---AEEFEDEVLESEDDLRDGEEARADEPRGERSADEAEAEGGEGRA 824 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + + + + +E+ D + + Sbjct: 825 EGSEEGGGRRRRRRRRRGGRSSGEEARAQDGQEPENESGNGSDAESDGSEDGDEAPESEA 884 Query: 699 TPEMESSNSSSDPIVKKTR 717 E+ + + D V + Sbjct: 885 ADEVAGAGAERDETVSEAG 903 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 68/143 (47%), Positives = 91/143 (63%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA+H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y Sbjct: 3 NNKMLIDATHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F EIHPDYYQIP +DR AL++ + + + + Sbjct: 63 GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122 Query: 122 EVAPIANFSQETEEESIISANND 144 + + + E + + ND Sbjct: 123 RGSRHDDTVKSQEAIAETVSEND 145 >gi|332975051|gb|EGK11957.1| ribonuclease E [Kingella kingae ATCC 23330] Length = 930 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 204/583 (34%), Positives = 299/583 (51%), Gaps = 21/583 (3%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K S + IQ+V+K L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLMPN Sbjct: 71 KEISRAYFRDYEGGKARIQDVLKEGTQLIVQVEKDERGNKGAALTTYISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE L+VP GM +I RTAG R+ E+ DF YL++LW Sbjct: 131 NPRGGGVSRRIEGEDRAE-LKEAMAQLDVPNGMSIIARTAGIGRSAEELNWDFNYLLQLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + A P+L++ E +L+ RAIRD Y DISEI+V + Y + +FM +MP+ Sbjct: 190 RAIEDAAAAHKQPYLLFMESSLVIRAIRDYYRPDISEILVDNPEVYEQVSEFMSYVMPNN 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ YED P+F R IE Q+++ V LPS G ++I+ TEALVSIDVNS RSTR Sbjct: 250 LSRLKLYEDHTPLFSRLQIEQQIETAFARSVNLPSGGAIVIDHTEALVSIDVNSARSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE L+++LKKDRA Sbjct: 310 SDIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQRDVETTLRDALKKDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IRS S AL +LR +++ + Sbjct: 370 RVQMGKLSRFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHVLRLIQDAAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + DV +LLN+KRA + E R VS+ ++ L + + I + Sbjct: 430 KENTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVILIPNPNLENPHYEISRIKVDD 489 Query: 573 ALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST------ 625 N S ++A P P L+ E+ Sbjct: 490 VDENADPSYKRVAEPEKSDSVPFANKKGEKAARPEPAVRGLKHATPAPTVNENKSWWSSF 549 Query: 626 -------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +++ ++ + + + Sbjct: 550 KGWLKRLFTGSDSKPETEKKAVSGSKKDGNRKRNNPNRRARPKSTRDENAAPSENGNQRT 609 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 N + A + P + +E S ++P +K Sbjct: 610 NRKANNRQRDAEKERPVDTNATPAMPEQRVEKSRPKNEPNPRK 652 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 40/78 (51%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY VTR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVVTRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF EI Y++ Sbjct: 62 TDRHGFLPFKEISRAYFR 79 >gi|99081300|ref|YP_613454.1| RNAse E [Ruegeria sp. TM1040] gi|99037580|gb|ABF64192.1| RNAse E [Ruegeria sp. TM1040] Length = 976 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 272/602 (45%), Positives = 372/602 (61%), Gaps = 7/602 (1%) Query: 94 NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153 A + + D +E +T ++ + S +D Sbjct: 210 EPATDGEAETVAEDSAAIEEADADDDTDEGGTEDAPEAKTGGADAADKDDSIESVADDDD 269 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 K ++Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT Sbjct: 270 QEDIRPPRKPRPKRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNT 329 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ++G ISRKITN DRK LK+IA L+VP G G+I+RTAGA RTK EIKRD+EYL R+W+ Sbjct: 330 ARGGGISRKITNAADRKKLKDIATELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRMWE 389 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +REL L S+AP +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A Sbjct: 390 QIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHA 449 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 + V+ Y+D P+F R +E L + V L S GY++I TEALV+IDVNSGR+T+E Sbjct: 450 KNVKNYQDQLPLFARYQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEA 509 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TA++TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEKKLK+ LK DRAR Sbjct: 510 SIEETAVKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLKDKLKTDRAR 569 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 +QVG IS FGLLEMSRQR+R ++E+TT C +C G G IRS S+ALSILR +EE + Sbjct: 570 IQVGRISGFGLLEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTR 629 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + ++V D+ YL+NQKR I + EAR+G+S+ + + L F +EK Sbjct: 630 RRSREVLVKCPVDIANYLMNQKREHIAQIEARYGLSVRIEGDVTLVSPDFSLEKFKTASR 689 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + A D+ +A+ + ++ ++E+ G + +R+ Sbjct: 690 AIPAVTTPVVSVDASIMDQV-------DAIEEVAETPEEAPAPQAPEADETEGEAKPKRK 742 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 RRRRRR + + + G +D + + D+ D + D + + E E + Sbjct: 743 RRRRRRKKSGNGENGQDADAQASEANASDASDAATDSQDAESDSKTETAPDAAGEGDGEA 802 Query: 694 IP 695 P Sbjct: 803 EP 804 Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats. Identities = 77/156 (49%), Positives = 97/156 (62%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A ++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDDEPKPKRRSRSRS 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156 + A A + E + + + ++ Sbjct: 121 KTRAEKAKTADAVETKEVATPEGEISGMETIDLSDD 156 >gi|167586608|ref|ZP_02378996.1| ribonuclease, Rne/Rng family protein [Burkholderia ubonensis Bu] Length = 594 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 197/540 (36%), Positives = 297/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGRSGEPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSPAPQRP 550 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|302878468|ref|YP_003847032.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2] gi|302581257|gb|ADL55268.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2] Length = 834 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 206/586 (35%), Positives = 300/586 (51%), Gaps = 26/586 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K +P+ + I+E ++ Q LLVQI K+ERGNKGAA+TTY+SLAGRY VLMPN Sbjct: 71 KEVAPQFHQPGCGPRPSIKEALREGQELLVQIEKDERGNKGAALTTYISLAGRYIVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 G +SR+I + L+E+ LEVP GM +I RTAG R + E++ D YL +LW Sbjct: 131 NPNGGGVSRRIEGDERAE-LREVLSNLEVPDGMSIIARTAGIGRNEEELQWDLNYLNQLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + A + AP L+Y E +L+ RAIRD + +I EI++ ++ Y++A FM +MP Sbjct: 190 TAIADAAKSEKAPSLIYLESSLVVRAIRDYFNPEIGEILIDTDEVYQQAHAFMSTVMPDN 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 +++Y D P+F R IE Q++S H EV LPS G ++I+ TEAL +ID+NS R+T+ Sbjct: 250 VNRIKRYVDDVPLFSRFQIEHQIESAHSREVRLPSGGAIVIDHTEALTAIDINSARATKG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE TA TNLEAAEEIARQ+RLRDL GLIV+DFIDME KN R VE +L++SL+ DRA Sbjct: 310 SDIEATAFNTNLEAAEEIARQMRLRDLGGLIVIDFIDMENSKNQRDVENRLRDSLRFDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ IS FGLLE+SRQR++ S+ ES C C G G+IR S AL ILR ++E + Sbjct: 370 RVQTAKISRFGLLELSRQRLQPSLGESNYITCPRCSGIGHIRGTESSALHILRIIQEEAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + ++ I DV +LLN+KR + E+R V I ++ L + I + + Sbjct: 430 KDSSAAIHAQVPVDVATFLLNEKRGDLHRIESRLRVPITLIPNPHLETPNYTINRLRQDE 489 Query: 573 ---------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD------ 617 LV + +D + + V + P P + + Sbjct: 490 LTGDAQPSYTLVEKPEENKADQEPQKGVRVQAAVKGITPVAPAPTAPVKTEPAATPGLLS 549 Query: 618 ----------NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 E+ T + + R R R ++ D ++ ++ + Sbjct: 550 QIGGWFKSLVAAEPEKETPAVSRPPRGRNDRPERSERGDRPDRNEGRKRRDRNPERNAAQ 609 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + P E + P++ Sbjct: 610 AIEKSAEKSTEKSTVTAEVRQPRPPRPPRPPKVANEQRPTEEKPVI 655 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD E K+Q K NIY A +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQPEELRVAIVDGQKLIDLDIEIAGKEQRKSNIYQAVITRIEPSLEACFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 GNRHGFLPF E+ P ++Q R ++ + Q + D Sbjct: 62 GNRHGFLPFKEVAPQFHQPGCGPRPSIKEALREGQELLVQIEKDE 106 >gi|149176937|ref|ZP_01855546.1| ribonuclease E [Planctomyces maris DSM 8797] gi|148844192|gb|EDL58546.1| ribonuclease E [Planctomyces maris DSM 8797] Length = 519 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 160/562 (28%), Positives = 262/562 (46%), Gaps = 58/562 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +ML++ EE+R+ ++ D +EEL E + + GNIY KV +EPS+QAAFVD Sbjct: 1 MKKEMLVNVLQPEESRIAIVEDGILEELYVERNSLENLVGNIYKGKVVNIEPSIQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G R+GFL +I YY+ + G + Sbjct: 61 FGVGRNGFLHVSDIEHQYYK------------------HLTDGDGNGKPGRGRNQKGRRV 102 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + + + V+ KG + R I ++ I Sbjct: 103 NERSVANKPPIQEILKRGSEVLVQVIKEGLGNKGPTLSTYISIPGRYLVIMPGLQRVGIS 162 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 ++ R + +T G I R +LK L Sbjct: 163 RKIADEDVRKDLRTILTQLAPPPGL-----------GFIVRTAGIDRTADDLKRDLNYL- 210 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +RLW + P +Y E +++ R IR Sbjct: 211 ----------------------------LRLWGTIVGRIKKLPTPVEIYSESDMMIRTIR 242 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+Y +I + + Y+ A+DFMK+++P + V+ Y PIF+ S ++ ++ S+ Sbjct: 243 DIYNSEIDTLYIDEPTAYQRARDFMKVVLPKHVNRVKHYTGNDPIFYNSKLDDEICSIQN 302 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V + G ++I+QTEALV+IDVNSG + E TA + N++AAEEI+RQ+RLRDL Sbjct: 303 RHVPMKGGGSIVIDQTEALVAIDVNSGNYRADDNAEKTAFKVNMKAAEEISRQIRLRDLG 362 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV+DFIDM E+K+ RSVE++L+E +K+DRAR +V IS FGL+EM+RQRIR S+ S Sbjct: 363 GVIVIDFIDMREEKHRRSVERRLRELVKRDRARTKVLRISPFGLIEMTRQRIRPSLRRSM 422 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C+G G +++ S+A+ ++R++ + + ++++ H +V YL N++R I Sbjct: 423 YEDCPSCRGTGQVKTAESMAIEVMRTLMTTVNKKNISRLVLNVHENVANYLNNKRRKDIT 482 Query: 541 EYEARFGVSINVVIGIELADKL 562 + E SI + ++ + Sbjct: 483 QLEETAQTSIIINARTDVEPEH 504 >gi|198283981|ref|YP_002220302.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665963|ref|YP_002426618.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248502|gb|ACH84095.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518176|gb|ACK78762.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 782 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 199/542 (36%), Positives = 304/542 (56%), Gaps = 5/542 (0%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DV 152 A+ A+ D D+ I + ++ + I E S+ +A D + + Sbjct: 11 AEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYGAERHGFLPL 70 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K + E ++ + + IQ++++ Q ++VQ+ KEER +KGAA+TT++SLAGRY VLMPN Sbjct: 71 KEIAREYFQQQEQGRKRIQDLVREGQEIIVQVDKEERSSKGAALTTFVSLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + +SR+I +++ + L++P MGVI RTAG + ++RD EYL ++W Sbjct: 131 NPRAGGVSRRIEGEDRT-QIRQHLQLLDIPENMGVIARTAGIGQELEALQRDLEYLKQIW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + A AP L+Y+EGN++ RA+RD + +DI E+++ E Y A FM +MP Sbjct: 190 QAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAAVQFMGSMMPKM 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y++ P+F R IE Q++S EV L S G ++I+ TEALV++DVNSGR+T+ Sbjct: 250 VHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAVDVNSGRATKG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 I +TA QTNLEAAEEIARQ+RLRDL GLIVVDFIDME K+ R VE KLKE+LK DRA Sbjct: 310 QDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVENKLKEALKLDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+EMSRQR+ +S+ E++++ C C G G IR + ++ +LR + E + Sbjct: 370 RVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATSMHVLRLLYEECM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + A + DV +YLLN+KR I+E EA+ I V+ E+ + I++ V+ Sbjct: 430 KTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTDTRILVIPTPEMVTPHYQIQRTR-VE 488 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + AL P+ E + + K Sbjct: 489 GGSGRTAPAPGGEGNALPARPSRPTNESAALSPLTAPPPPEVLPPLRTPPAPSSPKAKVP 548 Query: 633 RR 634 + Sbjct: 549 AK 550 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 44/108 (40%), Positives = 63/108 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ ++ +LD E +++Q K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 RHGFLP EI +Y+Q R+ + Q V + Sbjct: 62 AERHGFLPLKEIAREYFQQQEQGRKRIQDLVREGQEIIVQVDKEERSS 109 >gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas arsenicoxydans] gi|133739181|emb|CAL62230.1| Ribonuclease E (RNase E) [Herminiimonas arsenicoxydans] Length = 973 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 194/550 (35%), Positives = 297/550 (54%), Gaps = 10/550 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R I++ ++ Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN +G +SR++ Sbjct: 85 RNASIKDALREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E L++P GM VI RTAG R E++ D YLM+LW + + Sbjct: 145 EDRQE-LRETMDKLDLPQGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSGAGA 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y+E +L+ RAIRD + DI EI++ + Y +A+ FM +MP V++Y D P+ Sbjct: 204 FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQQFMSHVMPDMVHRVKRYRDDVPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ + V LPS G ++I+ TEALVS+DVNS R+TR IE TA TN E Sbjct: 264 FSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRGSDIETTAFHTNCE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQLRLRDL GLIV+DFIDME KN R VE +LK++L DRARVQ+G IS FGL+ Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETRLKDALHYDRARVQMGKISRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R S+ E + C C G G+IR S AL +LR ++E ++ + +I V Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENSASIHVQAPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +LLN+KR I++ E R VS+ ++ L + +E+ + + + Sbjct: 444 DVAAFLLNEKRGEILKIETRHRVSVILIPNKHLETPHYKLERIKHDDPRLEEVQASYAMT 503 Query: 586 QAPSYDKNIE-----CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR--- 637 + D + + + + + + + E +T + ++ Sbjct: 504 EQADTDISYDKRLKVEAKPRQEAMVKGITPDHAPVVERKPVEMATAAAPAEKGFFQKLMA 563 Query: 638 -RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + + A V +N + + + N + G E + + Sbjct: 564 FFSGSPEQPKAAPAQAVQEDKNQRNQRGERKDGGRNQRNRSRGGRGGRERGEEREETATK 623 Query: 697 VSTPEMESSN 706 + E+ N Sbjct: 624 PAPAASETQN 633 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q K NIY +TR+EPSL+A FV YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A +K++ + + G+ Sbjct: 62 EDRHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGN 110 >gi|15676123|ref|NP_273254.1| ribonuclease E [Neisseria meningitidis MC58] gi|7225417|gb|AAF40653.1| ribonuclease E [Neisseria meningitidis MC58] Length = 919 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|209517245|ref|ZP_03266090.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160] gi|209502381|gb|EEA02392.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160] Length = 599 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 199/539 (36%), Positives = 299/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ +K Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPDGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGTSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KRA I + E+RF V++ ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A PK E+ S V Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEKPAPSAPVRP 549 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGN 110 >gi|170738741|ref|YP_001767396.1| ribonuclease [Methylobacterium sp. 4-46] gi|168193015|gb|ACA14962.1| ribonuclease, Rne/Rng family [Methylobacterium sp. 4-46] Length = 1092 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 304/545 (55%), Positives = 379/545 (69%), Gaps = 1/545 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ +R Y IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 397 RPRAPRRHYKIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGI 456 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKEIA LEVP GMGVILRTAGASRTK EIKRDFEYLMRLW++VREL Sbjct: 457 SRKITSAADRKRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMRLWESVRELT 516 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+S AP LVYEEG+LIKRAIRDLY KDI E++V+G+ YREAKDFM++LMPS +++V+ Y Sbjct: 517 LSSSAPALVYEEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRMLMPSQSKVVKPY 576 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 DP P+F R G+E QLD++ V L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 577 RDPTPLFARYGVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 636 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+KL E LK DRAR+QVG I Sbjct: 637 LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQVGRI 696 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQRIR+ VLES++ C +C G+G++R+ SSVAL ILR++EE L++ ++HN+ Sbjct: 697 SPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSSSHNL 756 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578 I+ T +DV LY+LNQKR + E E RFGVSI V L F++++G P Q Sbjct: 757 ILRTRTDVALYILNQKRGHLRELETRFGVSITVSADERLPPTSAFHLDRGEPAQPPEPRL 816 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 ++A E +++ L + + E + E G R+RRRRRRRR Sbjct: 817 PVTSIRAEAVQPPPLEEEDEEEDETLEQAEGAAEEAGEAGGAGTEDEGGGRRRRRRRRRR 876 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 ++ Q + D + A G + + PV+ Sbjct: 877 GRGEGRPGEIEGETETAGQEAVGDEAAGDEAAGEEAAGEETGLPAAGPEGDEEPGEGPVT 936 Query: 699 TPEME 703 P E Sbjct: 937 IPITE 941 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 76/154 (49%), Positives = 96/154 (62%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASH EETRVV ++ ++VEE DFE+ +++Q++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E A+ + E + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALLEEDARAEREQEERPERNERASDDRRRRRRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 A A+ + + VE + Sbjct: 121 GRRAEAASAKADPVVSAPAEGLEVEGLEVEGGED 154 >gi|325135122|gb|EGC57749.1| ribonuclease E [Neisseria meningitidis M13399] Length = 916 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 7 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 67 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 246 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 425 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 546 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 605 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 606 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 665 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 666 MQTGKRRR 673 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 53/76 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG + Sbjct: 1 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60 Query: 65 RHGFLPFLEIHPDYYQ 80 RHGFLPF E+ Y+Q Sbjct: 61 RHGFLPFKEVSRSYFQ 76 >gi|161870864|ref|YP_001600038.1| ribonuclease E [Neisseria meningitidis 053442] gi|161596417|gb|ABX74077.1| ribonuclease E [Neisseria meningitidis 053442] Length = 919 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 609 AGKTARQEARADTAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|89055030|ref|YP_510481.1| ribonuclease E [Jannaschia sp. CCS1] gi|88864579|gb|ABD55456.1| RNAse E [Jannaschia sp. CCS1] Length = 890 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 249/598 (41%), Positives = 347/598 (58%), Gaps = 17/598 (2%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 + + + ++ + +T+ ++ S +++ +D V K ++Y I Sbjct: 175 EEPEGDADTTDDADADTDADTDTDADTDDSGDDNSEVVADDDDVEEIRPVRKPRPKKYKI 234 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 QEV+K RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK Sbjct: 235 QEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRK 294 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 LK+IA L+VP G G+I+RTAG+ RTK+EIKRD+EYL R W+ +REL L S+AP +Y+ Sbjct: 295 KLKDIATALDVPQGAGLIVRTAGSQRTKVEIKRDYEYLQRQWEQIRELTLKSIAPAPIYQ 354 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 EG+LI R IRDLY +DI E+IV GE GYR AKDFMK++MPS+A+ V+++ P+F + Sbjct: 355 EGDLIHRTIRDLYNRDIGEVIVEGEAGYRHAKDFMKMIMPSHAKKVKRHGGGVPLFAKYK 414 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 +E L + V L S GY++IN TEALV+IDVNSGRST+E IEDTA +TNLEAAEE+ Sbjct: 415 VESYLSDMFNPTVQLKSGGYIVINITEALVAIDVNSGRSTKEGSIEDTATKTNLEAAEEV 474 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQ+RLRDLAGLIV+DFIDM+E++NN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQ Sbjct: 475 ARQVRLRDLAGLIVIDFIDMDERRNNNAVEKRIKDKLKTDRARIQVGRISTFGLMEMSRQ 534 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R+R +LE+TT+ C +C G G +RS S+ALSILR +EE + A +++ +V + Sbjct: 535 RLRPGMLEATTQACHHCHGTGLVRSDDSLALSILRQLEEEGTRGRAREVLLTAPVGIVNF 594 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS------- 583 L+N KR + EAR G++I + L + IEK + V S Sbjct: 595 LINFKRDYLDAIEARSGMAIRIEADASLVVPDYKIEKFKTATRKITAVAPVVSMDAGLMD 654 Query: 584 ----------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 A D+ E ++ + + TG + Sbjct: 655 DIDEDAGDDVVEDADQVDEAAEASEDEQPRKKRRRRRGGRGRRRTSDENGETGDSAEDGS 714 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 D + + ++ T+ + Sbjct: 715 AAAAVPEEAAGADPSTDTPPEASPEGEEEQPKKRRRSRRGGRGRKSSEAQAETTDEGN 772 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/139 (50%), Positives = 85/139 (61%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA MLIDA+H EETRVVV +V+E DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKTMLIDATHAEETRVVVADGTKVDEFDFESLNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ALL E ++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLAEERAYAEQQAREEEEESSKPKRRRKRRRG 120 Query: 121 EEVAPIANFSQETEEESII 139 + + + + Sbjct: 121 GDTKAEETGNDAVAKGTPN 139 >gi|254805760|ref|YP_003083981.1| ribonuclease E [Neisseria meningitidis alpha14] gi|254669302|emb|CBA08287.1| ribonuclease E [Neisseria meningitidis alpha14] Length = 927 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVSEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 VQTGKRRR 684 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 70 TDRHGFLPFKEVSRSYFR 87 >gi|126728740|ref|ZP_01744555.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37] gi|126710670|gb|EBA09721.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37] Length = 1073 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 265/621 (42%), Positives = 358/621 (57%), Gaps = 2/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN--VEDVKG 154 D + D E + + SA ++ + + +D Sbjct: 292 DEDDTNGSQRPMAADSRDDGLVVTGEPGETSEDDDDEGSGDDPSARDESIESVADDDTHE 351 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT+ Sbjct: 352 DIRPVRKTSRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTA 411 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKITN DR LK IA ++VP G G+I+RTAGA RTK EIKRD+EYL RLW+ Sbjct: 412 RGGGISRKITNATDRSKLKAIANEIDVPKGAGLIIRTAGAKRTKTEIKRDYEYLQRLWEQ 471 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +REL L S+AP +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ Sbjct: 472 IRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRVAKDFMKMIMPSHAK 531 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+ Y + P+F R +E L + V L S GY++I TEALV+IDVNSGR+T+E Sbjct: 532 NVKHYTEQMPLFARYQVESYLGGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEGS 591 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IE+TA +TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEKKLK+ LK DRAR+ Sbjct: 592 IEETATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLKDKLKTDRARI 651 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS FGLLEMSRQR+R ++E+TT+ C+ C G G IRS ++AL ILR +EE ++ Sbjct: 652 QVGRISGFGLLEMSRQRLRPGMIEATTQPCSACHGTGLIRSDDNMALQILRQIEEEGVRR 711 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 + ++V + YL+NQKR + E+R+G+++ + L F +EK Sbjct: 712 RSREVLVKCPVGIANYLMNQKREHVAIIESRYGMAVRIEGDPHLVAPDFSMEKFKTATRS 771 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 V D E +E + ++E DN + + + ++ Sbjct: 772 VPEATAPVVSVDTSIMDAIDEATEAEEIEAEVEEAEDQSSGDDNGDDQGNEQGSDDKPKK 831 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 +RRRR G D S + D D + + + D Sbjct: 832 KRRRRRRRSKSKDGDQDDNGSNDGDTGNGSDDSDSNGDTGDSAEGGDTDGNTEDGQDGGK 891 Query: 695 PPVSTPEMESSNSSSDPIVKK 715 S S + S K+ Sbjct: 892 KTSSRSRSRSRSRSRSSKPKE 912 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 98/159 (61%), Gaps = 2/159 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 6 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 65 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++E E + Sbjct: 66 YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAAEEEEDKPKKTSRSRSRKKSTK 125 Query: 121 EEVAPIANFSQETE--EESIISANNDVVSNVEDVKGGSP 157 + +E E + A +D N + G+P Sbjct: 126 PSSRSDSKSPKEPSGMETIDLGAEDDTSENEAVAETGAP 164 >gi|325131026|gb|EGC53752.1| ribonuclease E [Neisseria meningitidis OX99.30304] gi|325137029|gb|EGC59625.1| ribonuclease E [Neisseria meningitidis M0579] gi|325202969|gb|ADY98423.1| ribonuclease E [Neisseria meningitidis M01-240149] gi|325207233|gb|ADZ02685.1| ribonuclease E [Neisseria meningitidis NZ-05/33] Length = 919 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 MQTGKRRR 676 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|317165426|gb|ADV08967.1| Rne [Neisseria gonorrhoeae TCDC-NG08107] Length = 916 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 7 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 67 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 246 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 425 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 546 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 605 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 606 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 665 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 666 GQTGKRRR 673 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 38/75 (50%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG + Sbjct: 1 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLPF E+ Y+ Sbjct: 61 RHGFLPFKEVSRSYF 75 >gi|238562751|ref|ZP_04610205.1| ribonuclease E [Burkholderia mallei GB8 horse 4] gi|238521977|gb|EEP85424.1| ribonuclease E [Burkholderia mallei GB8 horse 4] Length = 610 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|122879239|ref|YP_201712.6| ribonuclease E [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1232 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++G + +A L IP ++ I+ + + Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 544 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P I + G + E Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 604 Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722 + + + + + K+ R +R+ Sbjct: 605 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 643 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|308388416|gb|ADO30736.1| ribonuclease E [Neisseria meningitidis alpha710] Length = 916 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 7 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 67 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ + + +FM +MP Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVHDQVAEFMSYVMPG 245 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 246 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 306 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 425 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 426 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 485 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623 + ++ + E + + ++ Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWW 545 Query: 624 ---------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + ++ R R + S V + Sbjct: 546 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 605 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 606 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQSRNVQPAATVADAAPSETE 665 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 666 MQTGKRRR 673 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 38/76 (50%), Positives = 53/76 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG + Sbjct: 1 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60 Query: 65 RHGFLPFLEIHPDYYQ 80 RHGFLPF E+ Y++ Sbjct: 61 RHGFLPFKEVSRSYFR 76 >gi|291614219|ref|YP_003524376.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1] gi|291584331|gb|ADE11989.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1] Length = 835 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 201/587 (34%), Positives = 296/587 (50%), Gaps = 28/587 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K SP+ + I+E +K Q LLVQ+ K+ERGNKGAA+TTY+SLAGRY VLMPN Sbjct: 71 KEVSPQYYSAGAGNRPSIKEALKEGQELLVQVEKDERGNKGAALTTYISLAGRYIVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 G +SR+I L+++ +EVP GM +I RTAG R E++ D +YL +LW Sbjct: 131 NPNGGGVSRRIEGEDR-NELRDVLAQMEVPHGMSIIARTAGIGRNLDELQWDLDYLKQLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 D + A + AP L+Y E +L+ RAIRD + +I EI++ + Y +A+ FM +MP + Sbjct: 190 DAIEGAAESEKAPSLIYLESSLVVRAIRDYFNPEIGEILIDTDDIYHQAQAFMSTVMPDH 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 +++Y D P+F R IE Q++S H +V LPS G ++I+ TEAL +ID+NS R+TR Sbjct: 250 VDRIKRYHDDVPLFSRFQIEHQIESAHARQVNLPSGGAIVIDHTEALTAIDINSARATRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE TAL TNLEAA+EIARQLRLRDL GLIV+DFIDME KN R VE +L+++L DRA Sbjct: 310 GDIETTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKNQREVENRLRDALHFDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q IS FGLLE+SRQR+ S+ ES+ C C G G+IR S AL+ILR ++E + Sbjct: 370 RIQTAKISRFGLLELSRQRLAPSLEESSYSTCPRCNGIGHIRGTESSALNILRIIQEEAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + ++ I DV +LLN+KRA I E+RF ++ ++ + + + + Sbjct: 430 KDSSAAIHAQVPVDVATFLLNEKRADIHRIESRFKTAVILIPNPHMETPQYNVTRLRQDD 489 Query: 573 ALVNTGHK-----VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + P+ + + + + + V E Sbjct: 490 ITADHLQASYKLVEKPEEVKPALASTAQEIKAQRPQAAVRGITPAQPAPKHEVKTEKKTS 549 Query: 628 ----------------------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + R +RR + + G + D + Sbjct: 550 LLGSLVGWLKSLGGESEPAKPAAPAKSGRGNQRRERGERSERGERGERGEGGKQRRDRNE 609 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + N + + + P +S P Sbjct: 610 GGKQQRRDRNEAPRTDNKEQKEQPENRGERQQQQPRQPRPSSVDKPA 656 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 44/105 (41%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD E+ K+Q K NIY A +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQPEELRVAIVDGQKLIDLDIETAGKEQRKSNIYKAVITRIEPSLEACFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 G RHGFLPF E+ P YY +R ++ + Q V D Sbjct: 62 GTRHGFLPFKEVSPQYYSAGAGNRPSIKEALKEGQELLVQVEKDE 106 >gi|220925873|ref|YP_002501175.1| ribonuclease, Rne/Rng family [Methylobacterium nodulans ORS 2060] gi|219950480|gb|ACL60872.1| ribonuclease, Rne/Rng family [Methylobacterium nodulans ORS 2060] Length = 1045 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 282/434 (64%), Positives = 343/434 (79%), Gaps = 1/434 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ +R Y IQEVIK RQ++LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 365 RPRAPRRHYKIQEVIKRRQVILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 424 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKEIA LEVP GMGVILRTAGASRTK EIKRDFEYLMRLW++VREL Sbjct: 425 SRKITSAADRKRLKEIASDLEVPEGMGVILRTAGASRTKPEIKRDFEYLMRLWESVRELT 484 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+S AP LVYEEG+LIKRAIRDLY KDI E++VSGE YREAKDFM++LMPS +++V+ Y Sbjct: 485 LSSSAPALVYEEGSLIKRAIRDLYTKDIEEVLVSGEDAYREAKDFMRMLMPSQSKVVKPY 544 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 DP P+F R G+E QLD++ V+L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 545 RDPTPLFARYGVEQQLDAMFSNHVSLRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 604 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+KL E LK DRAR+QVG I Sbjct: 605 LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQVGRI 664 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQRIR+ VLES++ C +C G+G++R+ SSVAL ILR++EE L++ ++HN+ Sbjct: 665 SPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSSSHNL 724 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578 I+ T +DV LY+LNQKR + E E RFGV+I + L A F +++G P Q Sbjct: 725 ILRTRTDVALYILNQKRVHLRELETRFGVTITIAADERLPATSAFNLDRGEPAQPPEPRL 784 Query: 579 HKVGSDSQAPSYDK 592 ++A Sbjct: 785 PVTSIRAEAVEPPP 798 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 69/90 (76%), Positives = 81/90 (90%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASH EETRVV ++ ++VEE DFE+ +++Q++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL 90 YGGNRHGFL F EIHPDYYQIP +DR ALL Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPIADRLALL 90 >gi|240015039|ref|ZP_04721952.1| Rne [Neisseria gonorrhoeae DGI18] gi|240116641|ref|ZP_04730703.1| Rne [Neisseria gonorrhoeae PID18] gi|240122107|ref|ZP_04735069.1| Rne [Neisseria gonorrhoeae PID24-1] gi|240124727|ref|ZP_04737613.1| Rne [Neisseria gonorrhoeae SK-92-679] Length = 927 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 GQTGKRRR 684 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 70 TDRHGFLPFKEVSRSYF 86 >gi|255021320|ref|ZP_05293368.1| Ribonuclease E [Acidithiobacillus caldus ATCC 51756] gi|254969183|gb|EET26697.1| Ribonuclease E [Acidithiobacillus caldus ATCC 51756] Length = 703 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 200/608 (32%), Positives = 315/608 (51%), Gaps = 8/608 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + ++ + + E S+ +A D + Sbjct: 9 EELRVALVDGQKLLDLDIEHTFREQKKSNVYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + + IQ++++ Q ++VQ+ KEER +KGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFSQPEQPGRKRIQDLVREGQEVIVQVDKEERSSKGAALTTFVSLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + +SR+I + +++ + L++P MGVI RTAG + ++RD EYL ++W Sbjct: 129 NPRAGGVSRRIEGEDRTQ-IRQHLQMLDIPDNMGVIARTAGIGQDFEALQRDLEYLKQIW 187 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E A + AP L+Y+EGN++ RA+RD + +DI E+++ E ++ A+ FM +MP Sbjct: 188 QAIVEAAEKAPAPFLIYQEGNVVVRALRDHFSEDIGEVLIDDESAFQAAQQFMTAMMPKV 247 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y++ P+F R IE Q++S EV L S G ++I+ TEALV+IDVNSG+ST+ Sbjct: 248 LNRLKLYDNDIPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAIDVNSGKSTKG 307 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 I +TA QTNLEAAEE+ARQ+RLRDL GLIVVD IDME K+ R VE +LKE+LK DRA Sbjct: 308 QDIAETAFQTNLEAAEEVARQIRLRDLGGLIVVDLIDMESPKHQREVESRLKEALKLDRA 367 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQVG IS FGLLEMSRQR+ +S+ E++ + C C G G IR AL +LR + E L Sbjct: 368 RVQVGRISRFGLLEMSRQRLGASLEEASYEPCPRCSGTGQIRGCEGTALHVLRLLHEEAL 427 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + A + DV +YLLN+KR ++E EA+ I ++ L + I++ Sbjct: 428 KAGAAEVECKVPVDVAVYLLNEKRLPLLELEAKSNTRITIIPDPALLTPHYEIQRVKA-- 485 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 H ++S D + +++ T ++ Sbjct: 486 -EATPAHNERTNSSRNLRDLPNRPARAQNGAAQAALNPLTAPPPPSVLPPPKTLPQSPQQ 544 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 R + + AT + + V ++ + + + + + Sbjct: 545 RDKSASKTATPPSEGILARFVRALVSRYEPVDSQTFLTRALGEEAIPPAAEPVSGDVETK 604 Query: 693 SIPPVSTP 700 + TP Sbjct: 605 ASGDTETP 612 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 40/106 (37%), Positives = 61/106 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+H EE RV ++ ++ +LD E ++Q K N+Y ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATHPEELRVALVDGQKLLDLDIEHTFREQKKSNVYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 RHGFLP EI +Y+ P + +++ + D Sbjct: 61 RHGFLPLKEISREYFSQPEQPGRKRIQDLVREGQEVIVQVDKEERS 106 >gi|316985117|gb|EFV64069.1| ribonuclease E [Neisseria meningitidis H44/76] Length = 916 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 7 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 66 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 67 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 126 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 127 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 185 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 186 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 245 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 246 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 305 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 306 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 365 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 366 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 425 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 426 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 485 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 486 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 545 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 546 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 605 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 606 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 665 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 666 VQTGKRRR 673 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 53/76 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG + Sbjct: 1 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 60 Query: 65 RHGFLPFLEIHPDYYQ 80 RHGFLPF E+ Y+Q Sbjct: 61 RHGFLPFKEVSRSYFQ 76 >gi|240081628|ref|ZP_04726171.1| Rne [Neisseria gonorrhoeae FA19] gi|240124401|ref|ZP_04737357.1| Rne [Neisseria gonorrhoeae PID332] Length = 927 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVSAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 GQTGKRRR 684 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 70 TDRHGFLPFKEVSRSYF 86 >gi|58427290|gb|AAW76327.1| ribonuclease E [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1237 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 15 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 74 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 75 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 134 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 135 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 193 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 194 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 253 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 254 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 313 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 314 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 373 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 374 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 433 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 434 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 493 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++G + +A L IP ++ I+ + + Sbjct: 494 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 549 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P I + G + E Sbjct: 550 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 609 Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722 + + + + + K+ R +R+ Sbjct: 610 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 648 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 7 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 66 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 67 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 115 >gi|258592844|emb|CBE69153.1| Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) [NC10 bacterium 'Dutch sediment'] Length = 510 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 183/565 (32%), Positives = 287/565 (50%), Gaps = 58/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++++S V ETRV VL D + EL + K I GNIY +V ++ P +QAAFVD Sbjct: 1 MKREIIVNSSIV-ETRVAVLEDGVLVELLIDDSKNKSIAGNIYKGRVLKILPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I D E +T G+ + Sbjct: 60 LGLAKDAFLYVRDI----------------------FEDVEEYEQLLTIGEEGESAESPD 97 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE P + + Q I+E++K Q + Sbjct: 98 EEPRPTFSRGRRP---------------------------------QASIEEILKEGQEI 124 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + Q+ +E G KGA +T++++L GRY V MP +SRKI N +R LK+I + Sbjct: 125 VAQVAREPLGTKGARITSHITLPGRYLVYMPTEQHVG-VSRKIENEGERSRLKQIIEEIN 183 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RTAG + + EI+ D E+L LW ++ A AP LV ++ +LI R R Sbjct: 184 PQRE-GVIVRTAGVGKERAEIEADLEFLRSLWKKIKGKAETLAAPALVQKDLDLIFRIFR 242 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ K++ ++V Y ++ + L P + Y + PIF GIE +++ + Sbjct: 243 DLFTKEVVRLVVDSPTEYERCLEYAESLHPELKSHLFLYTEDEPIFKSFGIEREVEKALR 302 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 + L S GY+++ +TEALVSIDVN+G+ +H E+T L+TNLEAA+EIARQ+RLRDL Sbjct: 303 HKAWLKSGGYIVLEETEALVSIDVNTGKYVGKHDFEETVLKTNLEAAQEIARQVRLRDLG 362 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM +++ V ++LKE+LK DR+ V +S GL+EM+R+R+R + ++ Sbjct: 363 GIIIIDFIDMARQESRDRVVQELKEALKPDRSPTNVSLLSELGLVEMTRKRVRQGLNKAL 422 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G G+IRS S+A +LR VE L + + H D++ + + I Sbjct: 423 SASCPECGGLGHIRSTPSIAHQVLREVEWRLFSKRIPLVRIRAHPDLIGWFQAEDGEVIE 482 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 + +G I +V LA + + Sbjct: 483 ALQQTYGGEIVLVPEESLAPGKYQL 507 >gi|88859601|ref|ZP_01134241.1| RNase E [Pseudoalteromonas tunicata D2] gi|88818618|gb|EAR28433.1| RNase E [Pseudoalteromonas tunicata D2] Length = 1080 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 196/566 (34%), Positives = 297/566 (52%), Gaps = 6/566 (1%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 F + I++VIK Q ++VQ+ KEERG KGAA+TT++S+AG Y VLMPN + Sbjct: 78 FPKDYNFSGRPNIKDVIKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAG 137 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 ISR+I LK+ LE+P GMG+I+RTAG ++ E+ D + L+ WD + Sbjct: 138 GISRRIEGDERTD-LKDALSRLELPKGMGLIVRTAGVGKSFEELDYDLKALLIHWDAIVT 196 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 + AP L+++E N+I RAIRD +DI EI++ + + EAK ++ P + V+ Sbjct: 197 ASEKGPAPFLIHQESNVIFRAIRDYLRRDIGEILIDKTRVFEEAKAHIERFRPDFMSRVK 256 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS ++T+ IE+ Sbjct: 257 LYKGEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATKGGDIEE 316 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +LKE+++ DRARVQ+G Sbjct: 317 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKEAVRPDRARVQIG 376 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 IS FGLLEMSRQR+R S+ E++ C C G G IRS S+ALSILR +EE ++ Sbjct: 377 KISRFGLLEMSRQRLRPSLGEASQGTCPRCNGQGTIRSTESIALSILRLIEEEAIKDNTA 436 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 + V YLLN+KR ++ E + +V + + + + + + + Sbjct: 437 QVNAQVPVSVAAYLLNEKRRSVSAIEKHHECDVVIVPNQHMETPHYEVHRLKHDETVESV 496 Query: 578 GHKVGSDSQAPSYDK-NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + +A S+D I+ V +++ L S + V + Sbjct: 497 SYSQIKKPEAMSFDASKIQKVEKEQPALQGVISPTEPAPVAKKPEPAPVAVAPSEGLLSK 556 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R + +V Q + + + + D + P Sbjct: 557 LTRWVKSLFASEEKPEVKEAQERTTPPRNNDSRRRNNSRARP----PRKSVDASDSATKP 612 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722 P ++S+S + + + +RR Sbjct: 613 ADKPVRDNSDSRVERDSRDNKNKRRR 638 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 62 AQRHGFLPLKEIARTYF 78 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 48/150 (32%), Gaps = 2/150 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 Q S + S + P + + D D+ V +S Sbjct: 573 VKEAQERTTPPRNNDSRRRNNSRARPPRKSVDASDSATKPADKPVRDNSDSRVERDS-RD 631 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF- 686 + +RRR R+PA++ + + + ++ + F + ++ + Sbjct: 632 NKNKRRRSPNRKPASEVVETAAAAVEAVVEQQPEPRFKERRQRRNLRKKVRVTEDVLETL 691 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 T + + P +++++ + K + Sbjct: 692 TLDDIKVVEPAPQVQVKTAQADVKVEDKPS 721 >gi|254670426|emb|CBA06017.1| ribonuclease E [Neisseria meningitidis alpha153] Length = 927 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 VQTGKRRR 684 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87 >gi|291042837|ref|ZP_06568578.1| ribonuclease E [Neisseria gonorrhoeae DGI2] gi|291013271|gb|EFE05237.1| ribonuclease E [Neisseria gonorrhoeae DGI2] Length = 921 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 12 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 72 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 132 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 191 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 251 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 311 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 371 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 431 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 491 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 550 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 551 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 610 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 611 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 670 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 671 GQTGKRRR 678 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 4 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 63 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 64 TDRHGFLPFKEVSRSYF 80 >gi|325205288|gb|ADZ00741.1| ribonuclease E [Neisseria meningitidis M04-240196] Length = 919 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVTEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|325145392|gb|EGC67669.1| ribonuclease E [Neisseria meningitidis M01-240013] Length = 919 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 62 TDRHGFLPFKEVSRSYFR 79 >gi|59802104|ref|YP_208816.1| Rne [Neisseria gonorrhoeae FA 1090] gi|254494663|ref|ZP_05107834.1| ribonuclease E [Neisseria gonorrhoeae 1291] gi|260439598|ref|ZP_05793414.1| Rne [Neisseria gonorrhoeae DGI2] gi|268602309|ref|ZP_06136476.1| ribonuclease E [Neisseria gonorrhoeae PID18] gi|268683304|ref|ZP_06150166.1| ribonuclease E [Neisseria gonorrhoeae SK-92-679] gi|293398144|ref|ZP_06642349.1| ribonuclease E [Neisseria gonorrhoeae F62] gi|59718999|gb|AAW90404.1| putative ribonuclease E [Neisseria gonorrhoeae FA 1090] gi|226513703|gb|EEH63048.1| ribonuclease E [Neisseria gonorrhoeae 1291] gi|268586440|gb|EEZ51116.1| ribonuclease E [Neisseria gonorrhoeae PID18] gi|268623588|gb|EEZ55988.1| ribonuclease E [Neisseria gonorrhoeae SK-92-679] gi|291611407|gb|EFF40477.1| ribonuclease E [Neisseria gonorrhoeae F62] Length = 919 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 GQTGKRRR 676 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 62 TDRHGFLPFKEVSRSYF 78 >gi|71907634|ref|YP_285221.1| ribonuclease E [Dechloromonas aromatica RCB] gi|71847255|gb|AAZ46751.1| RNAse E [Dechloromonas aromatica RCB] Length = 870 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 210/645 (32%), Positives = 322/645 (49%), Gaps = 18/645 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D D+ I + + + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYGADRHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + P + IQ+ +K Q L++Q+ K+ERGNKGAA+TTY+SLAGRY VLM Sbjct: 70 FKEVSRAFFQPGTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVSLAGRYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR++ + L+++ LEVP GM +I RTA R E++ D YL++ Sbjct: 130 PNNPRGGGVSRRVDGDERAE-LRDVMDQLEVPNGMSLIARTAAIGRQAEELQWDLNYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A L+Y EG+L+ RAIRD + DI EI++ ++ Y +A+ FM +MP Sbjct: 189 LWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQARAFMGTVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ +V LPS G ++I+ TEALV++DVNSGR+T Sbjct: 249 GNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAVDVNSGRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TN EAAEE+ARQLRLRDL GLIV+DFIDME +KN R VE +L+++L+ D Sbjct: 309 KGSDIEETAFKTNQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENRLRDALRFD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E++ C C G G+IRS S AL ILR +EE Sbjct: 369 RARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSAESAALHILRILEEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + V DV +LLN+KR I E R V+I ++ + L I + Sbjct: 429 AMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPAHTITRLRH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL---EDIQDNIVSEESTGV 627 + + ++ I+ Q EA P ++ D I+ E++ Sbjct: 489 DDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPIMPEKAEAP 548 Query: 628 IRKRRRRRR----------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + + R P A + D D + + Sbjct: 549 VAAPAQPEGGLFSKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRGGRNGNRRD 608 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + + + + +++ + K R Sbjct: 609 EERGERKERPERKERNAVDKAPQDGTPASNGERKERRPRGERKER 653 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/109 (37%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ ++Q +A ++++ + D G+ Sbjct: 62 ADRHGFLPFKEVSRAFFQPGTEVGRARIQDALKEGQELIIQVDKDERGN 110 >gi|268597724|ref|ZP_06131891.1| ribonuclease E [Neisseria gonorrhoeae FA19] gi|268683028|ref|ZP_06149890.1| ribonuclease E [Neisseria gonorrhoeae PID332] gi|268551512|gb|EEZ46531.1| ribonuclease E [Neisseria gonorrhoeae FA19] gi|268623312|gb|EEZ55712.1| ribonuclease E [Neisseria gonorrhoeae PID332] Length = 919 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVSAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 GQTGKRRR 676 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 62 TDRHGFLPFKEVSRSYF 78 >gi|325143209|gb|EGC65549.1| ribonuclease E [Neisseria meningitidis 961-5945] gi|325197483|gb|ADY92939.1| ribonuclease E [Neisseria meningitidis G2136] gi|325199408|gb|ADY94863.1| ribonuclease E [Neisseria meningitidis H44/76] Length = 919 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|319411318|emb|CBY91729.1| ribonuclease E (RNase E) [Neisseria meningitidis WUE 2594] Length = 927 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 VQTGKRRR 684 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87 >gi|325203318|gb|ADY98771.1| ribonuclease E [Neisseria meningitidis M01-240355] Length = 919 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + + E++ N + + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNIQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|121595592|ref|YP_987488.1| ribonuclease E [Acidovorax sp. JS42] gi|120607672|gb|ABM43412.1| RNAse E [Acidovorax sp. JS42] Length = 1025 Score = 325 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 192/550 (34%), Positives = 294/550 (53%), Gaps = 6/550 (1%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + Q IQ+VIK Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A L+Y+E +L+ RAIRD + DI +I++ + Y +A FM +MP + Sbjct: 191 TAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAHQFMAHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ G IS FGL+EMSRQR++ S+ E C C G G++R +L +LR ++E + Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + + +V +LLN+KR I + E + VS+ ++ L + +E+ Sbjct: 431 KDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPHYKLERLKHDD 490 Query: 573 -ALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 L N + Q ++ E + ++ ++ + + + G Sbjct: 491 PRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPEGAARGA 550 Query: 628 IRKRRRRRRR 637 R + + ++R Sbjct: 551 TRPQGQGQQR 560 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA +++ + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGN 110 >gi|167619212|ref|ZP_02387843.1| ribonuclease E [Burkholderia thailandensis Bt4] Length = 588 Score = 325 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|312795516|ref|YP_004028438.1| ribonuclease E [Burkholderia rhizoxinica HKI 454] gi|312167291|emb|CBW74294.1| Ribonuclease E (EC 3.1.4.-) [Burkholderia rhizoxinica HKI 454] Length = 1100 Score = 325 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 201/579 (34%), Positives = 300/579 (51%), Gaps = 22/579 (3%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 84 MRSARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIE 143 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 ++ L+E LE+P GM +I RTAG R+ E++ D YL++LW + A + Sbjct: 144 GDDRQE-LRETMAQLELPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAAANGTRG 202 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+Y E +L+ RAIRD + DI EI++ + +A+ FM+++MP V++Y D P Sbjct: 203 PLLIYLESSLVIRAIRDYFQPDIGEILIDTPDIHDQARAFMEVVMPDNLGKVKRYHDDVP 262 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F R IE Q+++ + V LPS G V+I+ TEALV+IDVNS R+T+ IE+TAL+TNL Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAVVIDHTEALVAIDVNSARATKGADIEETALRTNL 322 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK DRARVQ+G IS FGL Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEASKSQREVEQRLKDALKHDRARVQMGKISRFGL 382 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +E+SRQR+R ++ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 383 MELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQVP 442 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 +V +LLN+KR I + E+RF V++ ++ L + +E+ ++ Sbjct: 443 VEVTAFLLNEKRQEINKIESRFKVNVVLIPNKHLETPHYKLERLRHDDVRLDEPRASWRM 502 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVIRKRRRR--------- 634 ++ + + E + PK E+ + I ++ + +T + R Sbjct: 503 AEEAARELESETGYSKRDSDAKPKQEAAVKGITPDMPAPSATPRPVPPQARPSAPVTPAA 562 Query: 635 -----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 R V + + H Sbjct: 563 TASGGFIGWLKRIFSGEPPAQPAQATVKATPARPTGGRAGSEARQGTERNRPHRRGPQSG 622 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 DV+ PV E + R Sbjct: 623 SRDAAPRDVAAQPVRGRRDERDTRDERAARDERSVRDTR 661 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGVEMRSARIQDALHEGQELIVQVEKEERGN 110 >gi|240129078|ref|ZP_04741739.1| Rne [Neisseria gonorrhoeae SK-93-1035] Length = 927 Score = 325 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFLGYEGARARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 GQTGKRRR 684 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 70 TDRHGFLPFKEVSRSYF 86 >gi|254245934|ref|ZP_04939255.1| Ribonuclease E and G [Burkholderia cenocepacia PC184] gi|124870710|gb|EAY62426.1| Ribonuclease E and G [Burkholderia cenocepacia PC184] Length = 1090 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 199/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + NS P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSAAPQR 549 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|304389006|ref|ZP_07371053.1| ribonuclease E [Neisseria meningitidis ATCC 13091] gi|304337140|gb|EFM03327.1| ribonuclease E [Neisseria meningitidis ATCC 13091] Length = 927 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 209/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAAPVAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + + E++ N + S P + Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNIQPAATVADSAPSETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 VQTGKRRR 684 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87 >gi|121634071|ref|YP_974316.1| ribonuclease E [Neisseria meningitidis FAM18] gi|120865777|emb|CAM09506.1| ribonuclease E [Neisseria meningitidis FAM18] gi|325133120|gb|EGC55792.1| ribonuclease E [Neisseria meningitidis M6190] gi|325139088|gb|EGC61634.1| ribonuclease E [Neisseria meningitidis ES14902] Length = 919 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 207/668 (30%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ + + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVHDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623 + ++ + E + + ++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWW 548 Query: 624 ---------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 62 TDRHGFLPFKEVSRSYFR 79 >gi|325129114|gb|EGC51963.1| ribonuclease E [Neisseria meningitidis N1568] Length = 919 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 319/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MPS Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENSKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-------SSSDPIVKK 715 + + + NG E D + E++ N + + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 123 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 62 TDRHGFLPFKEVSRSYFR 79 >gi|254481998|ref|ZP_05095240.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium HTCC2148] gi|214037688|gb|EEB78353.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium HTCC2148] Length = 920 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 205/578 (35%), Positives = 308/578 (53%), Gaps = 10/578 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + + I++V+K ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 74 GREYFYRKSDGEGRMKIKDVVKEGTEIIVQVDKEERGNKGAALTTFISLAGRYMVLMPNN 133 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I + L+E LE+P GMGVI+RTAG R+ E++ D YL++LW+ Sbjct: 134 PRAGGISRRIDGDDRSE-LREALSALEIPNGMGVIIRTAGVGRSSEELQWDLNYLLQLWE 192 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + E S L+++E N+I RAIRD DI ++++ + Y++A DF+ +MP + Sbjct: 193 KITEANNESKPATLLFQESNVIIRAIRDYLRDDIDQVLIDSPEAYQQADDFISQVMPQFK 252 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 +R YED P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 253 SKLRVYEDSIPMFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARATKGK 312 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TAL+TNLEAA+E+ARQLRLRD+ GLIV+DFIDM K+ R VE +++++L DRAR Sbjct: 313 DIEETALKTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKSQRQVENRMRDALNIDRAR 372 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ KVC C G G IR S+ALSILR +EE ++ Sbjct: 373 VQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCTGQGTIRDTKSLALSILRLLEEEAIK 432 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + I DV YLLN+KR + E E V + VV L F +++ + Sbjct: 433 ERSAEIRAIVPVDVAAYLLNEKRTALGEIERDAKVRVLVVPNPNLETPHFEVQRLRDDEI 492 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + + P + + + ++EST +++ Sbjct: 493 DGDQEISYKIEVAEPDVESISDTHTAAIPQQEAAVQGVVPKAPSPQTAKESTTAKPEQKS 552 Query: 634 RRRRRRPATDHHDAGVVSD-----VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ + + G+V+ + + + + + N + Sbjct: 553 KQHSGKSTAEKSQPGLVARFFGKLFGAAEEKQPKQEESKPKSKQSGQKSSQGNRNNRNRN 612 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR----WWKRR 722 + E + + +T KRR Sbjct: 613 RNRRGQGQQARGERQDDKRNQQQSQSRTGGSGEQQKRR 650 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 1/108 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KMLI+A+ EE RV ++ R+ +LD E+ + Q K NIY AK+TRVEPSL+AAFVD+G Sbjct: 2 KKMLINATQPEELRVALVDGQRLYDLDIENRTRVQKKSNIYKAKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 +RHGFLP EI +Y+ SD + +K ++ + +E + Sbjct: 62 ADRHGFLPLKEIGREYFY-RKSDGEGRMKIKDVVKEGTEIIVQVDKEE 108 >gi|222111814|ref|YP_002554078.1| Rne/Rng family ribonuclease [Acidovorax ebreus TPSY] gi|221731258|gb|ACM34078.1| ribonuclease, Rne/Rng family [Acidovorax ebreus TPSY] Length = 1029 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 192/550 (34%), Positives = 293/550 (53%), Gaps = 6/550 (1%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + Q IQ+VIK Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A L+Y+E +L+ RAIRD + DI +I++ + Y +A FM +MP + Sbjct: 191 TAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAHQFMAHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ G IS FGL+EMSRQR++ S+ E C C G G++R +L +LR ++E + Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + + +V +LLN+KR I + E + VS+ ++ L + +E+ Sbjct: 431 KDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPHYKLERLKHDD 490 Query: 573 -ALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 L N + Q ++ E + ++ ++ + + + G Sbjct: 491 PRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPEGAARGA 550 Query: 628 IRKRRRRRRR 637 R + ++R Sbjct: 551 TRPQGHGQQR 560 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA +++ + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGN 110 >gi|163759370|ref|ZP_02166456.1| putative ribonuclease [Hoeflea phototrophica DFL-43] gi|162283774|gb|EDQ34059.1| putative ribonuclease [Hoeflea phototrophica DFL-43] Length = 999 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 325/597 (54%), Positives = 401/597 (67%), Gaps = 9/597 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 +A DV +++ P + + S + + + V ED + Sbjct: 221 KGDDKPTEMAADVEADEISEPAPRRRRKSRNDDDGSSSDDNGGSEDDDVESV-GSEDAQE 279 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 P +K ++QY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT+ Sbjct: 280 ELPARPQRKPRKQYRIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 339 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKITN DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+N Sbjct: 340 RGGGISRKITNLPDRKRLKEIARELEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWEN 399 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VR L L S AP LVYEEG+LIKR+IRDLY KDISEI+VSGE+GYREAKDFMK+LMPS+A+ Sbjct: 400 VRNLTLQSTAPSLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKMLMPSHAK 459 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 +V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEALV+IDVNSGRSTREH Sbjct: 460 VVQPYRDLHPIFARSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTREHS 519 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEE +NNR+VEK++K+ LK DRAR+ Sbjct: 520 IEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEENRNNRAVEKRMKDCLKNDRARI 579 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS+FGLLEMSRQRIR+SVLEST +VC C G G+IRSQSSVAL +LR VEE+LL+ Sbjct: 580 QVGRISHFGLLEMSRQRIRASVLESTMQVCPTCGGNGHIRSQSSVALHVLRGVEEHLLKN 639 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 T H+IIV T D LY+LN KR T+V E FGVSI+ + F I++G+ V+ Sbjct: 640 TTHDIIVRTTGDTALYMLNHKRDTVVGLENMFGVSISFSADETVGANHFAIDRGAAVEKP 699 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 VN H S D+ +P+ +E E+ D ++++ G R Sbjct: 700 VNIDHITVSSP--------AYPEDDDDPEIPVDDAEEAEENGDASEAQDARGEERNEDGT 751 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R+RR + + S + + D + + + D Sbjct: 752 GRKRRRRRRRGGRKSEGENGNGDERAASSDETASDDGDDDDESSNNGNQADSASDGD 808 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 84/167 (50%), Positives = 106/167 (63%), Gaps = 9/167 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDASH EETRVVV+R NR+EE DFES+HKKQ++GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAEKMLIDASHPEETRVVVVRGNRIEEFDFESQHKKQLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ D D ++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPLADRQALLQAEAE---------DAANDPDFDNSDEPEV 111 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167 + P +++++ A ++ S + S ++ K+ Sbjct: 112 AKPKPKRQSRSKSQDKDKAKAKDESESGDDAEGSKSRPRRSRRGKKN 158 Score = 43.8 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 52/170 (30%), Gaps = 18/170 (10%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE--DIQDNIVSEESTG 626 QA + + S A S + + A + P S + + + + +E Sbjct: 829 DETQAGSDAATDGDTASDADSAPETDAPSPEATAAIEHPAETSSDAGPVTEAVQAEPEPE 888 Query: 627 VIRKRRRRRRRRRPA--------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +K R+RRR + AG + V + +D Sbjct: 889 AEKKPARKRRRTKAQIAADEAAKAAEAGDDTAEAAGDAAPVEAETAAAAPVVTEAAVVAD 948 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E T+ ++ PV T E + P KK WW++R Sbjct: 949 DAETGKPEEDRRNRTDLGAIASEPVVTSSSEKPEEAEKP--KKGGWWQKR 996 >gi|83952279|ref|ZP_00961011.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM] gi|83837285|gb|EAP76582.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM] Length = 928 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 254/524 (48%), Positives = 338/524 (64%) Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 S + + S +D K ++Y IQEVIK RQILLVQ+VKEERGNKGAA+T Sbjct: 245 AASKDEAIESVADDDDEADIRPPRKPRPKRYKIQEVIKVRQILLVQVVKEERGNKGAALT 304 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 TYLSLAGRY VLMPNT++G ISRKITN DRK LKEIA ++VP G G+I+RTAGA RT Sbjct: 305 TYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASEIDVPRGAGLIVRTAGAKRT 364 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 K EIKRD+EYL RLW+ +REL L S+AP +YEEG+LIKR+IRDLY +DI E++V GE+G Sbjct: 365 KAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDIDEVLVEGERG 424 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 YR AKDFMK++MPS+A+ V+ Y+D P+F R +E L ++ V L S GY++I TE Sbjct: 425 YRIAKDFMKMIMPSHAKNVKNYQDAMPLFARYQVESYLGAMFNPTVQLKSGGYIVIGVTE 484 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 ALV+IDVNSGR+T+E IE+TAL+TNLEAA+E+ARQLRLRDLAGLIV+DFIDM+E++NN Sbjct: 485 ALVAIDVNSGRATKEGSIEETALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERRNNA 544 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 +VEK++K+ LK DRAR+QV IS FGL+EMSRQR+R ++E+TT+ C C G G IRS Sbjct: 545 AVEKRMKDRLKTDRARIQVSRISGFGLMEMSRQRLRPGMIEATTQPCAACHGTGLIRSDD 604 Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 ++ALSILR +EE ++ + ++V + +L+NQKR + + E R+G+S+ + Sbjct: 605 NLALSILRQIEEEGVRRRSREVLVKCPVAIANFLMNQKREHVAQIETRYGLSVRIEGDHT 664 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 L F +EK V + E +E Sbjct: 665 LISPDFSLEKFKTATRSVPEATAPVVSVDSSIMADIDEAEPIEEEAEDNLPGGDAPAETQ 724 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 + R+RRR +R D+ G D S + + Sbjct: 725 GEDDKPKKRRRRRRRRGGKRNGDEGDNGSDGDNGDNSDSEEAAE 768 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 77/135 (57%), Positives = 94/135 (69%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ALL+E +A +D + + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLEEERAYAEALKAREEDDSKPKRSRRSRSRS 120 Query: 121 EEVAPIANFSQETEE 135 + E+ + Sbjct: 121 KAAQADNGDVVESSD 135 >gi|268687457|ref|ZP_06154319.1| ribonuclease E [Neisseria gonorrhoeae SK-93-1035] gi|268627741|gb|EEZ60141.1| ribonuclease E [Neisseria gonorrhoeae SK-93-1035] Length = 919 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFLGYEGARARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREA 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 GQTGKRRR 676 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 62 TDRHGFLPFKEVSRSYF 78 >gi|309379095|emb|CBX22226.1| ribonuclease E [Neisseria lactamica Y92-1009] Length = 926 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 205/661 (31%), Positives = 309/661 (46%), Gaps = 36/661 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623 + ++ + E + ++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 624 ------------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + R RR + G D S + Sbjct: 557 DSFKAWLKRIFGGTSETPAVAETSEKRISGGNRNAPRRTGSRRQNPRRGNRHDGSRAEVR 616 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 F + H + + N + E + + ++ Sbjct: 617 ETADFKGKAADNQAAEHETRNAKDNRRSRNRQNERNAAAEAENPEVRTLAAATPSESETR 676 Query: 720 K 720 Sbjct: 677 P 677 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 70 TDRHGFLPFKEVSRSYF 86 >gi|319783258|ref|YP_004142734.1| ribonuclease, Rne/Rng family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169146|gb|ADV12684.1| ribonuclease, Rne/Rng family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 982 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 295/545 (54%), Positives = 376/545 (68%), Gaps = 5/545 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE----TEEESIISANNDVV 146 ++ + DV E+ + + + E +S +++V Sbjct: 189 QDEGEIREGGPTSIAASVEADVISEAVPLAEQGSEATSGDNDRGMLEEVQSSHPDDHEVE 248 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 S + + K +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRY Sbjct: 249 SVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRY 308 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 SVLMPNT++G ISRKIT+ VDRK LKE+ LEVP GMGVILRTAG SRTK EIKRD+E Sbjct: 309 SVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTKAEIKRDYE 368 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YLMRLW+NVR L L S AP LVYEEG+LIKR++RDLY KDI EI+VSGE+GYREAKDFM+ Sbjct: 369 YLMRLWENVRNLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGEEGYREAKDFMR 428 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 +LMPS+A++V+ + D PIF R+GIE QLD + Q +VTL S GY+IINQTEALV+IDVNS Sbjct: 429 MLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNS 488 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 GRST+EH IEDTAL TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE +NNRSVEK+LK+ Sbjct: 489 GRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRSVEKRLKDH 548 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 LK DRAR+QVG IS+FGL+EMSRQRIR+SVLEST K C +C G G++RS SSVAL ++R+ Sbjct: 549 LKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVALMVVRA 608 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 +EE+LL+ + +I V T + LY+LN KR T+VE E+RFG++I V + + + I Sbjct: 609 IEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITVEADDSVGSQHYAIF 668 Query: 567 KGSPVQALVNTGHKVG-SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +G+ + P ++ V +++ PI + + Q + Sbjct: 669 RGALAEKPEGFVEARSFPAYVEPDEPEDEIAVIEEDDEAPIQAEQPRQQPQQQQPRPAAG 728 Query: 626 GVIRK 630 G + Sbjct: 729 GEEGE 733 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 89/268 (33%), Positives = 116/268 (43%), Gaps = 30/268 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDASH EETRVVV+R NR+EE DFES+ KKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MPNKMLIDASHPEETRVVVIRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLK----------------------------- 91 YGGNRHGFL F EIHPDYYQIP +DRQALL+ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEENEDGDGDDRQSRDRGRRGR 120 Query: 92 -ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + E D G+ + D + E T E +A++ ++ Sbjct: 121 RRGGKPRDRGEHKRDAADSGEASDAADEAEEGADAGVEDISHTSEIIEHAADSSEHADAS 180 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + S E + + ++ + V A Sbjct: 181 EHGEDSAEQDEGEIREGGPTSIAASVEADVISEAVPLAEQGSEATSGDNDRGMLEEVQSS 240 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARG 238 + +N ++ R Sbjct: 241 HPDDHEVESVGAEDALEEVRNRRKPVRR 268 >gi|145588576|ref|YP_001155173.1| ribonuclease [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046982|gb|ABP33609.1| RNAse E [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 879 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 204/587 (34%), Positives = 309/587 (52%), Gaps = 14/587 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R I++ ++ Q ++VQ+ KEERG KGAA+T+++SLAGRY VLMPN Sbjct: 72 EVARTYFKEGIDVRNASIKDALREGQEIIVQVEKEERGQKGAALTSFVSLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E LEVP GM +I RTAG R E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LREAMSQLEVPEGMSIIARTAGIGRDATELQWDLSYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E A + AP L+Y E +L+ RAIRD + DI EI++ + Y +A FM ++MP Sbjct: 191 KAIDEAAKGNSAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYEQAAAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALVS+DVNS R+TR Sbjct: 251 LPRVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+EIARQ RLRDL GLIV+DFIDME K + VE +L+++L+ DRA Sbjct: 311 SDIEETATRTNLEAADEIARQARLRDLGGLIVIDFIDMESSKAQKDVENRLRDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+EMSRQR+R ++ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISKFGLMEMSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KRA +++ E RF V++ +V L + +E+ Sbjct: 431 KENTAAIHTQVPVEVAAFLLNEKRAEVIKIETRFKVNVLMVPNKHLETPHYKLERLRHDD 490 Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 L + +A + V + +A L + +++ I + Sbjct: 491 PRLDDQKASYVMAEEAARELETDTTVSRKDAELKVRPEAAVKGITPAQPA-------PIS 543 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + R R T G+ + + + + + PS+ N Sbjct: 544 QPRPARTEKTTTESSGGLFGFIKKLFSS-SPAVEEKPAPSNTRGRNQ 589 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 63/108 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 RHGFLPF E+ Y++ R A +K++ + + G Sbjct: 62 EERHGFLPFKEVARTYFKEGIDVRNASIKDALREGQEIIVQVEKEERG 109 >gi|294787875|ref|ZP_06753119.1| ribonuclease E [Simonsiella muelleri ATCC 29453] gi|294484168|gb|EFG31851.1| ribonuclease E [Simonsiella muelleri ATCC 29453] Length = 963 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 199/585 (34%), Positives = 300/585 (51%), Gaps = 28/585 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMPN Sbjct: 71 KEVSRAYFQDYEGGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE L VP GM +I RTAG R+ E++ DF YL++LW Sbjct: 131 NPRGGGVSRRIEGEDRAE-LKEAMSQLNVPNGMSIIARTAGIGRSAEELQWDFNYLLQLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E A P+L++ E +L+ RAIRD Y DI+EI+V + + + +FM +MP+ Sbjct: 190 HAIEEAAAAHKQPYLLFMESSLVIRAIRDYYRPDIAEILVDNPEVFEQVSEFMSYVMPNN 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ YED P+F R IE Q+++ V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 250 LSRLKLYEDHTPLFSRLQIEQQIETAFARSVSLPSGGAIVIDHTEALVSIDVNSARATRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE L+++LKKDRA Sbjct: 310 SDIEETAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQREVENVLRDALKKDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IRS S AL +LR +++ + Sbjct: 370 RVQMGKLSRFGLLELSRQRLQPALSESSHIACPRCAGTGVIRSIESTALHVLRLIQDAAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + DV +LLN+KRA + E R +S+ ++ + + + I + Sbjct: 430 KENTGEVHAQVPVDVATFLLNEKRAELFGMEERLDMSVFLIPNPHMENPHYEITRIRTDD 489 Query: 573 ALVNTGHKVGSDSQAPSYD------KNIECVWQDEALLPIPKSESLEDIQD--------- 617 N +Q + K E V + E + K S Q Sbjct: 490 VEENVLPSYKRVTQPEKKEAVPFANKKGEKVVRQEPAVKGLKHASPAPSQAKLEKSWWDN 549 Query: 618 ------------NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 E+ + + +R + Q V+D Sbjct: 550 FKGWLGGILGQTEKTQPETPTGKKLKTTNKRNNPNRRQQSNKQRRQQSEQQQPVMDAGKS 609 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 +N + + + + + ++ Sbjct: 610 RLQYDKQQQQRQNKNQDKPSDKQNQNYNAKAENRKQRNQNKNAKQ 654 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 53/78 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLPF E+ Y+Q Sbjct: 62 VERHGFLPFKEVSRAYFQ 79 >gi|90413247|ref|ZP_01221242.1| Putative ribonuclease E [Photobacterium profundum 3TCK] gi|90325799|gb|EAS42257.1| Putative ribonuclease E [Photobacterium profundum 3TCK] Length = 1099 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 208/667 (31%), Positives = 320/667 (47%), Gaps = 41/667 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D S Sbjct: 12 EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPKGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W V+E A ++ AP L+++E N+I RAIRD +DI EI++ K + A+D +KL+ P Sbjct: 191 WSAVKEAADSNPAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA QTNLEAA+E+ARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETAFQTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ VC C G G +R S++LSILR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ V YLLN+KR ++ E V + +V E+ F + + Sbjct: 431 LKDNSAQVLAIVPVAVASYLLNEKRRSVQHIEKFHTVRVVIVPNAEMETPHFEVLRIREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK----------------SESLEDI 615 +++ +A + E Q+ + + + + Sbjct: 491 DQKDTLSYQMPKVIEAIKEAEAAEAPQQERVIKKHEEPVLQGFASPKTPAPVVAAKPKPA 550 Query: 616 QDNIVSEEST------------------GVIRKRRRRRRRRRPATDHHD-AGVVSDVSSI 656 + E+ G + ++ + + + G Sbjct: 551 APTKSATEAKAQPGLISRLFSALTNLFSGPAEQEPEKKVETKQDNRNDNRRGERQGNRRN 610 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + D N NG E ++ + + Sbjct: 611 DTRRNKDSSRRNNRQDTDRDNSENNGEQRQQRQQRPRRNEKPQQERQNDKPAKQRSPRNE 670 Query: 717 RWWKRRK 723 + RK Sbjct: 671 DKRQPRK 677 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP E+ DY YQ + ++ L + + + + Sbjct: 62 SERHGFLPLKEVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112 >gi|270293859|ref|ZP_06200061.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275326|gb|EFA21186.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 524 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 152/580 (26%), Positives = 267/580 (46%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D ++ EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKQLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + +SL Sbjct: 60 VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ LS AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W++ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E Y E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIHVNSEAVYHEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 ++ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H + Y+ + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYVNQGLVSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPNQKLAFLEYVFYDLQGEEIDMKEE 520 >gi|160889024|ref|ZP_02070027.1| hypothetical protein BACUNI_01444 [Bacteroides uniformis ATCC 8492] gi|317479305|ref|ZP_07938440.1| rne/Rng family ribonuclease [Bacteroides sp. 4_1_36] gi|156861491|gb|EDO54922.1| hypothetical protein BACUNI_01444 [Bacteroides uniformis ATCC 8492] gi|316904593|gb|EFV26412.1| rne/Rng family ribonuclease [Bacteroides sp. 4_1_36] Length = 524 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 152/580 (26%), Positives = 267/580 (46%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D ++ EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKQLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + +SL Sbjct: 60 VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ LS AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W++ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E Y E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIHVNNEAVYHEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 ++ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H + Y+ + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYVNQGLVSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPNQKLAFLEYVFYDLQGEEIDMKEE 520 >gi|271500124|ref|YP_003333149.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586] gi|270343679|gb|ACZ76444.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586] Length = 1075 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 196/631 (31%), Positives = 302/631 (47%), Gaps = 8/631 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGMETPHYAVLRIR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + A S E V + A + ++ + Sbjct: 491 KGEEKQALSYMLPQLLDAESQQATEEQVSERRAPEQPALASFTMPDIPQDEAQPAPTTPA 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G + + + + + D + + + Sbjct: 551 PSVEKPASSERGLFGRFIGALKGMFASSDAVKDKPAEAAKTESDDQEQKQDRRNNRRQSG 610 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 P D + R + Sbjct: 611 RRDRTRDNREPRERGERGERDEQRRNKRTQQ 641 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|325267843|ref|ZP_08134493.1| ribonuclease E [Kingella denitrificans ATCC 33394] gi|324980724|gb|EGC16386.1| ribonuclease E [Kingella denitrificans ATCC 33394] Length = 917 Score = 323 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 195/556 (35%), Positives = 293/556 (52%), Gaps = 4/556 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMPN Sbjct: 71 KEVSRAYFQDYEGGRARIQDVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE L+VP GM +I RTAG R+ E++ DF YL++LW Sbjct: 131 NPRGGGVSRRIEGDDRAE-LKEAMAHLDVPHGMSIIARTAGIGRSTEELQWDFNYLLQLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E A P+L++ E +L+ RAIRD Y DI+EI+V + Y + +FM +MP+ Sbjct: 190 RAIEEAAAAHKEPYLLFMESSLVIRAIRDYYRPDIAEILVDNPEVYEQVSEFMSYVMPNN 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y D P+F R IE Q+++ V+LPS G ++I+ TEALVSIDVNS RSTR Sbjct: 250 LSRLKLYTDHTPLFSRLQIEQQIETAFARSVSLPSGGAIVIDHTEALVSIDVNSARSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME+ K+ R VE L+++LKKDRA Sbjct: 310 ADIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQRDVENVLRDALKKDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IRS S AL +LR +++ + Sbjct: 370 RVQMGKLSRFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHVLRLIQDAAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + DV +LLN+KRA + E R VS+ ++ L + + I + Sbjct: 430 KDNTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNTNLENPHYEITRIRTDD 489 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 N + + + E + Sbjct: 490 VEENAEPSYKRVAPPEKTESVPFSNSKGEKAARQEPAVKGLRHASPAPVSSQNASWWDSF 549 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + ++ +G + + + + S N N N + Sbjct: 550 KNWLKKLFG---DTSGSSENTAPAASSFGKNGSKSRGGSKRNNPNRRPNAGKNREDGEQQ 606 Query: 693 SIPPVSTPEMESSNSS 708 S+ + + + + Sbjct: 607 SVNERKSRNADKRSRN 622 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 40/78 (51%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATHSEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLPF E+ Y+Q Sbjct: 62 VERHGFLPFKEVSRAYFQ 79 >gi|261391733|emb|CAX49182.1| ribonuclease E (RNase E) [Neisseria meningitidis 8013] Length = 919 Score = 323 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 208/668 (31%), Positives = 318/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENSKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAASAAETSEKRSTANRSGSRVNNRRQNPRRSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++ N + P + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQGRNVQPAATVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTSKRRR 676 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|238920271|ref|YP_002933786.1| ribonuclease E [Edwardsiella ictaluri 93-146] gi|238869840|gb|ACR69551.1| ribonuclease, RNaseE/RNaseG family , putative [Edwardsiella ictaluri 93-146] Length = 1071 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 201/651 (30%), Positives = 311/651 (47%), Gaps = 27/651 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSSYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S+ALSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + V YLLN+KR + E R V + VV ++ + + + Sbjct: 431 ALKENSREVHAIVPVPVASYLLNEKRDAVNAIEKRQPDVRVIVVPNEQMQTPHYAVMRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI-------PKSESLEDIQDNIVSE 622 + +K+ +A + + P + ++ QD ++ Sbjct: 491 KGEETHTLSYKLPQLHEAEACGDEEVPAERKRPEQPALAAFSLNVAAPPIDAAQDKPIAA 550 Query: 623 ESTGVIRKRRRRRRR-----------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + R + R + V + + + Sbjct: 551 DVAPTERPQPVADTRPGLFGRLVASLKGIFAGEAAPAPVQEDKPAVSAERPREESRSPQE 610 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E D PE ++ ++ R +RR Sbjct: 611 RRGRRQNPRRERGERGERGDRP-ERGERPERGERPERANRDGRENRDEQRR 660 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|82702193|ref|YP_411759.1| ribonuclease [Nitrosospira multiformis ATCC 25196] gi|82410258|gb|ABB74367.1| RNAse E [Nitrosospira multiformis ATCC 25196] Length = 977 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 213/670 (31%), Positives = 317/670 (47%), Gaps = 52/670 (7%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++ + D E+ + ++ LE + E + + Sbjct: 11 PEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLE----------PSLEAAFVEY 60 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + + + +Q+ + Q L+VQ+ K+ERG KGAA+TTY+S Sbjct: 61 GGERHGFLPFKEISRSYLKESPDPGRVRVQDALHEGQELIVQVDKDERGTKGAALTTYIS 120 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN +G +SR+I + L+++ L +P GM +I RTAG RT+ E+ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRIEGEDRAE-LRDVMSHLNIPQGMSIIARTAGIGRTEEEL 179 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D YL++LW + + + L+Y+E +L+ RAIRD + ++I EI++ E Y +A Sbjct: 180 QWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIYEQA 239 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 FM +MP V+ Y D P+F R IE Q+++ + +VTLPS G ++I+ TEALVS Sbjct: 240 CQFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALVS 299 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNS R+TR IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDME +N R VE Sbjct: 300 VDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQREVEN 359 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +L ++L+ DRARVQ+G IS FGLLE+SRQR+R S+ ES+ C C G G+IR S AL Sbjct: 360 RLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSAL 419 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR ++E ++ + DV YLLN+KRA I EAR VS+ ++ I L Sbjct: 420 HILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARLKVSVVLIPNIHLETP 479 Query: 562 LFYIEKGSPVQALVNTGH-------------KVGSDSQAPSYDKNIECVWQDEALLPIPK 608 + I + + + S Q P + V P P Sbjct: 480 NYSITRLRHDDVKLGEVQTSYQMVEKPAQDIPLPSSGQEPKPMRQQAAVRGITPAQPAPV 539 Query: 609 SESLEDIQDN------------------------IVSEESTGVIRKRRRRRRRRRPATDH 644 E + + + + RR RR Sbjct: 540 REQKPQHEPEPLSLLDKIFGWFKQGGVGEKTVRHEPPVAAAHPEERGQGRRDRREGRIGE 599 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 ++ + +Q D + E S +L E + + Sbjct: 600 NEKAARA----VQRPRDARAERGAEISPSGAPDLTREAVPQRQERSEAKTQGERAAAKKH 655 Query: 705 SNSSSDPIVK 714 S + + Sbjct: 656 PRSQREEKPR 665 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/76 (53%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY A +TR+EPSL+AAFV+YG Sbjct: 2 KRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 G RHGFLPF EI Y Sbjct: 62 GERHGFLPFKEISRSY 77 >gi|227821681|ref|YP_002825651.1| ribonuclease E [Sinorhizobium fredii NGR234] gi|227340680|gb|ACP24898.1| ribonuclease E [Sinorhizobium fredii NGR234] Length = 922 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 326/597 (54%), Positives = 408/597 (68%), Gaps = 4/597 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII-- 139 P R+A K S + +D+ + G++ D A ++ +++ Sbjct: 149 PKRTRRAKAKTSEQKEEVQADASDEGSSGEMAAMVDVDSISEDVDARRRRDDDDDDDDGH 208 Query: 140 --SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 ED P+ +K ++QY IQEVIK RQI+LVQ+ KEERGNKGAA+T Sbjct: 209 DGEKEIIESVGAEDAMEEVPDRQVRKPRKQYRIQEVIKRRQIILVQVAKEERGNKGAALT 268 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 TYLSLAGRYSVLMPNT++G ISRKITN DRK LKEIARGL+VP GMGVILRTAGA+RT Sbjct: 269 TYLSLAGRYSVLMPNTARGGGISRKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRT 328 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 K+E+KRDFEYLMRLW+NVR L LNS AP LVYEEG+LIKR+IRDLY KDISEIIVSGE+G Sbjct: 329 KVEVKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEG 388 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 Y+EAK FMK+LMPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTE Sbjct: 389 YKEAKSFMKMLMPSHAKVVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTE 448 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 ALVSIDVNSGRSTREH IEDTALQTNLEAAEE+ARQLRLRDLAGL+V+DFIDMEEK+NNR Sbjct: 449 ALVSIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNR 508 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 +VEKKLK+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLEST + C +C G G++RSQS Sbjct: 509 AVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHVRSQS 568 Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 SVAL +LR +EE+LL+ T H+I+V T ++ LYLLNQKR TI +YE RFGVSI + Sbjct: 569 SVALHVLRGIEEHLLKNTTHDIVVRTIPEIALYLLNQKRGTITDYERRFGVSIIIDADAH 628 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 + + F I++G PV+ V + + D+++ + + + Sbjct: 629 VGAQHFAIDRGEPVENPVKIEQLLHFAPEPEDEDEDVVIEEDLDEEEAEEITAERREQPK 688 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 S++ G RKRRRRRR + ++ + V + + Sbjct: 689 AQPSDDQGGRKRKRRRRRRGKGAGQTPESVAAEAEDMADGAVDEADESEDEGEAQDA 745 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 84/167 (50%), Positives = 98/167 (58%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLIDASH E TRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVDYGGN Sbjct: 1 MLIDASHSEGTRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGGN 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 RHGFL F EIHPDYYQIP +DRQALLK E + T + + Sbjct: 61 RHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARREEEIEPVETASEQVVEPPKDEAPAE 120 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171 A ET E + + + K +++ +Q Sbjct: 121 AEAPGVAETTEAATEVQAEAEAEKPKAKPKRTRRAKAKTSEQKEEVQ 167 Score = 41.5 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 1/151 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + + + ++E + Sbjct: 769 EAEGEAGLATEAGEESADAEAGAETEEPDFAAAAAVEHAVEVAPAEAEVPVVEAAKPAKP 828 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 +R R++ A + + D + + + Sbjct: 829 KRSRKKAVAVEAAAENADTAAEQAVEAQPDETVPAAVEDAVADLEAAKPARSNRDLTTIA 888 Query: 693 SIPPVSTPEMESS-NSSSDPIVKKTRWWKRR 722 S P V++ + N KK WW+RR Sbjct: 889 SEPVVTSNVAKGDGNEEESAKPKKGGWWQRR 919 >gi|295675986|ref|YP_003604510.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002] gi|295435829|gb|ADG14999.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002] Length = 489 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 135/566 (23%), Positives = 227/566 (40%), Gaps = 81/566 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GN+YL KV RV P +Q+AF+D Sbjct: 1 MNEEILINVT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL +I HP R A + E + + V + D Sbjct: 60 IGLERAAFLHVADIWHP---------RIAGEAQHQAPHQPIEKIVFEGQTLMVQVVKDPI 110 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 + A ++ + + + ++ + + Sbjct: 111 GTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREA------------------- 151 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + R + ++P KG I R I + L L Sbjct: 152 ----------------------VRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYL 189 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 IL A + +D R+ + V +E + I+ Sbjct: 190 RKTW--ATILSQAQRMPPTSLLYQDLNLAQRVLRDF------------VNDETSRIQVDS 235 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 R+ + + DF P+ + + Y P+F IE ++ Sbjct: 236 RETH---------------QMLADFAAEFTPAVSSKLHHYTGERPLFDLYNIEAEIQRAL 280 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 281 SRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 340 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDME ++ V +LK++L +DR RV V S GL+EM+R+R R S+ Sbjct: 341 GGVIIIDFIDMENAEHRDQVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV 400 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C+G G +++ +V +LR + Q+ V V+ L ++ + Sbjct: 401 LCEPCPVCQGKGQVKTARTVCYDVLREILRESRQFNPREFRVVASQQVIDLFLEEESQHL 460 Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565 G +++ + L+ + + I Sbjct: 461 AMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|161525363|ref|YP_001580375.1| ribonuclease [Burkholderia multivorans ATCC 17616] gi|160342792|gb|ABX15878.1| ribonuclease, Rne/Rng family [Burkholderia multivorans ATCC 17616] Length = 1111 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 191/468 (40%), Positives = 281/468 (60%), Gaps = 3/468 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 140 DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 199 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 ++ L+E L++P GM +I RTAG R+ E++ D YL++LW + + + Sbjct: 200 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 258 Query: 284 A--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP V++Y D Sbjct: 259 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 318 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA + Sbjct: 319 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 378 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK DRARVQ+G IS Sbjct: 379 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 438 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 439 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 498 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 +V +LLN+KR I + E+RF V I ++ L + +E+ A ++ Sbjct: 499 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 558 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 ++ + + E + A PK E+ S R Sbjct: 559 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSPAPQR 606 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 59 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 118 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 119 EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 167 >gi|325918634|ref|ZP_08180738.1| RNAse E [Xanthomonas vesicatoria ATCC 35937] gi|325535141|gb|EGD07033.1| RNAse E [Xanthomonas vesicatoria ATCC 35937] Length = 1243 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 212/655 (32%), Positives = 317/655 (48%), Gaps = 49/655 (7%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALV------------------------------NTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP ++ V Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAPT 548 Query: 601 EALLPIPKSESLEDIQ--------------DNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 A P+ + + ES R+ R R Sbjct: 549 PAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAAESLPRPRQNDAGRNNRNERGGQRR 608 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 G + + N S + + + + V P+ Sbjct: 609 DGRDARNGNGGNQQRGSGNGANKERRDERRQPANGQNGQAAQAGAQAQQQVQVPK 663 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|221135370|ref|ZP_03561673.1| ribonuclease [Glaciecola sp. HTCC2999] Length = 968 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 202/645 (31%), Positives = 319/645 (49%), Gaps = 17/645 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I + E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I++ +K Q +++QI KEERG KGAA+TT++SLAG Y VL Sbjct: 70 LKEIARHYFPKNYTFEGRPNIRDAVKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK LE+P GMG+I+RTAG ++ E+ D + L+ Sbjct: 130 MPNNPRAGGISRRIEGDERSE-LKATLDQLELPKGMGLIVRTAGVGKSFEELAWDLKVLL 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W+ + +A AP L+++E N+I RAIRD +D+ EII+ + +A ++L+ Sbjct: 189 THWEAITAVAEERPAPFLIHQESNVIVRAIRDYLRRDVGEIIIDKPAIFEQALQHIELVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P +A V+ Y P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFANRVKPYTGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TA TNLEAA+EIARQLRLRDL GL+V+D+IDM K+ R VE ++K+++ Sbjct: 309 TKGGDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDYIDMSVNKHQREVENRMKDAVSG 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLEMSRQR+R S+ ES VC C G G +R S+ALS+LR +EE Sbjct: 369 DRARIQLGRISRFGLLEMSRQRLRPSLGESAHNVCPRCAGTGTVRGTESLALSVLRIIEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ + DV Y+LN+KR + E E R V + V+ L+ F IE+ Sbjct: 429 ECIKDNTGQVEAQLPVDVATYILNEKRKALREMEERNKVEVLVLPNPNLSTPNFQIERRR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 P + +++ + V ++E L + ++ + + Sbjct: 489 PEDKVSGISYQLELAESNEQIQEAASAVPVQREEPALKGMIAPKAAPSPKPAEAKATPSL 548 Query: 628 IRK---------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 I + + + + + + + +D ++N+ Sbjct: 549 IAGFIAWLTALFAPKPAPKAKGKGRGRNNNQRRQGQNRNRNRNQRNRNQGDKNDARDNNV 608 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ D + + D KRR+ Sbjct: 609 NAKDNRELHDSNDAKEGKSNPRRNTRNRKRHDNDEGDNGQQKRRQ 653 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI Y+ Sbjct: 62 ADRHGFLPLKEIARHYF 78 >gi|253989176|ref|YP_003040532.1| ribonuclease E [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780626|emb|CAQ83788.1| rnase e, membrane attachment, mrna turnover, maturation 5s rna (rnas e) [Photorhabdus asymbiotica] Length = 1026 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 204/644 (31%), Positives = 315/644 (48%), Gaps = 25/644 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPNNYHPHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LEVP GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLEVPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLARQHITALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G V+I+ TEAL +ID+NS R+T Sbjct: 251 DFTSKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGAVVIDTTEALTAIDINSSRAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + E R G V + +V ++ F + + Sbjct: 431 ALKENTHQVHAIVPVQIASYLLNEKRQAVSAIERRQGDVGVVIVPNDQMQTPHFSVLRVR 490 Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + + + + + P D E ++ + + Q S ++ Sbjct: 491 KGEEVSTLSYLLPQFHETGAANPQEDIQPERKRPEQPAISAFALPTDAPAQAQQPSNKAK 550 Query: 626 GVIRKRRRRRRRRRPA-------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + +P+ + + D N S + + Sbjct: 551 EKKPNQPTQVKTEQPSLLSRFLTALKKIFSTEEETVQRKDNKPSGNDNRRSSERRNQRRQ 610 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + +N N P + N D T Sbjct: 611 HSRKDRDDNNLRDEQRNNRDRDEPRKNRNTQQKNGVQDNNPVNT 654 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|313667508|ref|YP_004047792.1| ribonuclease E [Neisseria lactamica ST-640] gi|313004970|emb|CBN86398.1| ribonuclease E [Neisseria lactamica 020-06] Length = 918 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 204/661 (30%), Positives = 308/661 (46%), Gaps = 36/661 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEE---- 623 + ++ + E + ++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 624 ------------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + R RR + G D + Sbjct: 549 DSFKAWLKRIFGGTSETPAAAETSEKRISGGNRNAPRRTGSRRQNPRRGNRHDGGRAEVR 608 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 F + H + + N + + + ++ Sbjct: 609 ETADFKGKAADNQAAEHETRNAKDNRRSRNRQNERNAAAEAGNPEVRTLAAATPSESETR 668 Query: 720 K 720 Sbjct: 669 P 669 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 62 TDRHGFLPFKEVSRSYF 78 >gi|188577475|ref|YP_001914404.1| ribonuclease E [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521927|gb|ACD59872.1| ribonuclease E [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1238 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++G + +A L IP ++ I+ + + Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 544 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P I + G + E Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 604 Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722 + + + + + K+ R +R+ Sbjct: 605 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 643 Score = 143 bits (361), Expect = 7e-32, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|84624583|ref|YP_451955.1| ribonuclease E [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368523|dbj|BAE69681.1| ribonuclease E [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1240 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 214/639 (33%), Positives = 328/639 (51%), Gaps = 16/639 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++G + +A L IP ++ I+ + + Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAP 544 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P I + G + E Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 604 Query: 691 DVSIPPVSTPEMES-------SNSSSDPIVKKTRWWKRR 722 + + + + + K+ R +R+ Sbjct: 605 ERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQ 643 Score = 143 bits (361), Expect = 7e-32, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|209885113|ref|YP_002288970.1| ribonuclease E (RNase E) [Oligotropha carboxidovorans OM5] gi|209873309|gb|ACI93105.1| ribonuclease E (RNase E) [Oligotropha carboxidovorans OM5] Length = 1123 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 285/563 (50%), Positives = 375/563 (66%), Gaps = 1/563 (0%) Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171 T E + A + +++S + V S D + + +RQY IQ Sbjct: 365 ETHEEHADAEHASEDAASDSDEDDDSDGEEDEQVESVGGDDALEEVPERTFRPRRQYKIQ 424 Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 EVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G ISRKIT+ DR Sbjct: 425 EVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRNR 484 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 LK++ + L+VP GMG+ILRTAGASRTK EIKRDFEYL+R+W+ VR+L L S AP LVYEE Sbjct: 485 LKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEE 544 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 G+LIKR++RDLY K+I E++VSGE+GY EA+DFMK+LMPS R V+ Y D P+F R G+ Sbjct: 545 GSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKMLMPSNVRAVKLYRDNQPLFSRMGV 604 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E QLD++ VTL S GY++INQTEALVSIDVNSGRSTREH IEDTAL+TNLEAAEE+A Sbjct: 605 ESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVA 664 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+QVG IS+FGLLEMSRQR Sbjct: 665 RQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQR 724 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 IR+SVLES+T+ C C G G++RS +SVAL +LRS+EE L++ HN V T +DV LY+ Sbjct: 725 IRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEEQLMKSGTHNYTVRTRTDVALYV 784 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSY 590 LN KR + + E F V++ V+ + + F IE+G V + + + A Sbjct: 785 LNHKRGHLRDLEEAFQVTLAVIADPTVGGQQAFVIERGEQVHTVEAAKALLAARVAAQPV 844 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + ++ + + ++ +RRRRRRR R + +A Sbjct: 845 EVEEFDAEEEFFEEETETESAENGDTETADAQGENEDGNRRRRRRRRGRGRGEGREASAQ 904 Query: 651 SDVSSIQNVIDDSFDMYMEPSDI 673 S D + + + Sbjct: 905 SAEGEASTGEDTQAEASEDGEED 927 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 72/93 (77%), Positives = 82/93 (88%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFES +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 107 MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE 166 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93 YGGNRHGFL F EIHPDYYQIP +DRQAL++ Sbjct: 167 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAD 199 >gi|167563552|ref|ZP_02356468.1| ribonuclease E [Burkholderia oklahomensis EO147] Length = 551 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEEAKPRQEAAVKGITPERPAPSAAPQRQ 547 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|300723638|ref|YP_003712943.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation [Xenorhabdus nematophila ATCC 19061] gi|297630160|emb|CBJ90797.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation [Xenorhabdus nematophila ATCC 19061] Length = 1052 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 207/628 (32%), Positives = 315/628 (50%), Gaps = 10/628 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++++K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYHSHGRPNIKDILKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LEVP GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRIE-LKEALSSLEVPEGMGLIVRTAGVGKSAEALQGDLNFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSHPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLARQHITALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A ++ Y P+F IE Q++S Q EV LPS G V+I+ TEAL +ID+NS RST Sbjct: 251 DFASKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGSVVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + + YLLN+KR + E R GV + +V ++ F + + Sbjct: 431 ALKENTYQVHAIVPVQIASYLLNEKRKAVSAIEHRQGGVGVVIVPNDQMQTPHFSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + N++ Q E P + S DI + + Sbjct: 491 KGEEISALSYLL--PQLHETEMANVQDDSQHERKRPEQPAISTFDIPAESPAPTAAKATV 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 K + ++ G+ S S + + + +N N Sbjct: 549 KLKEKKPADNSQNQTARPGLFSRFFSALKKMFSGEEEKQPLEQNKKSSGNDNRRSSERRN 608 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717 E E+ N+ +K R Sbjct: 609 PRRQNQRRDRNESETRNNRERDEQRKGR 636 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|289209150|ref|YP_003461216.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix] gi|288944781|gb|ADC72480.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix] Length = 504 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 154/567 (27%), Positives = 272/567 (47%), Gaps = 68/567 (11%) Query: 1 MA-NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M ++L++ + +E+RV ++ + + EL E ++ I GNIY +V RV P + AAFV Sbjct: 1 MTGTEILMNVT-PQESRVALVDNGVLTELHLERTRRRGIVGNIYKGRVVRVLPGMDAAFV 59 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 +I DR A L S++A + E + Sbjct: 60 -------------DIG--------LDRTAFLHASDVAPVEREEL---------------- 82 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 + G R I+E+++ Q Sbjct: 83 ----------------------------DGHGSANGPGNGGGNGSGRAETIRELLREGQD 114 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL-KEIARG 238 +LVQ++K+ G KGA +TTY+++ R+ VLMPN S +R + K A Sbjct: 115 VLVQVIKDPLGTKGARLTTYITVPSRHLVLMPNQSNVGVSTRIEDEGSRSRLREKVEALR 174 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 E+ G I+RTA ++ D +L ++WD+++ A + A VY + L+ R Sbjct: 175 NEIAPQHGFIVRTAAELVDDEALENDTAFLKKVWDSIQMAAAEASAGEEVYADLPLVLRI 234 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 +RD+ +I I + + Y++ +F+ +P + Y PIF +E ++ Sbjct: 235 LRDMVGVEIERIRIDSRETYQKVCEFVAQYLPELVGRIEHYPGERPIFDLFNVEEEIQRA 294 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 + +V L S GY+I +QTEA+ ++D+N+G +E+T +TNLEAA+ I RQLRLR+ Sbjct: 295 LERKVELKSGGYLIFDQTEAMTTVDINTGGFVGHRKLEETIFKTNLEAAQAIGRQLRLRN 354 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L G+I++DFIDM++ ++ R V + L+++L++D + Q+ +S GL+EM+R+R R S+ Sbjct: 355 LGGIIIIDFIDMQDDEHKRQVIRALEKALERDHVKTQICDVSPLGLVEMTRKRTRESLEH 414 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + C C G GY++S +V + R + + QY A + V +V+ LL+++ A+ Sbjct: 415 QLCEPCPTCAGRGYLKSAETVCYELFREILREVRQYDARELRVLASQNVIDLLLDEESAS 474 Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565 + E ++ G+ I + + F + Sbjct: 475 LAELQSFVGIPIRFQVETLYTQEQFDV 501 >gi|240140398|ref|YP_002964877.1| putative ribonuclease E or G [Methylobacterium extorquens AM1] gi|240010374|gb|ACS41600.1| putative ribonuclease E or G [Methylobacterium extorquens AM1] Length = 1054 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 290/547 (53%), Positives = 373/547 (68%), Gaps = 1/547 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 353 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 412 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKE+ L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL Sbjct: 413 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 472 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE YREAKDFM++LMP +++V+ Y Sbjct: 473 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 532 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 DP PIF R G+E QLD++ T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 533 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 592 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNLEAAEE+ARQ+RLRDLAGL+V+DFIDMEEK+NNR+VEK+L E+LK DRAR+QVG I Sbjct: 593 LKTNLEAAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRI 652 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQRIR+ VLES++ C +C G+G++R+ SSVAL ILRS+EE LL+ +HN+ Sbjct: 653 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNV 712 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578 ++ T ++ LY+LNQKRA + + E RF V+I + L A F +E+G P Sbjct: 713 VLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPV 772 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 V + + +P Y+ E+ +E + E + RRRR Sbjct: 773 TGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRR 832 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R A + + DS D + ++ + + P + Sbjct: 833 RRRRRGGRASGEGEARARDEDGTDSEDGAEDGAEDGDDAPDSEPEAVEAALGAAAEPDET 892 Query: 699 TPEMESS 705 + +++ Sbjct: 893 ASDADAN 899 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 67/142 (47%), Positives = 89/142 (62%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y Sbjct: 3 NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F EIHPDYYQIP +DR AL++ + + + + Sbjct: 63 GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122 Query: 122 EVAPIANFSQETEEESIISANN 143 + + + E S + + Sbjct: 123 RGSRPDDTVKSQEAVSDAGSED 144 >gi|209517578|ref|ZP_03266417.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160] gi|209501991|gb|EEA02008.1| ribonuclease, Rne/Rng family [Burkholderia sp. H160] Length = 489 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 135/566 (23%), Positives = 223/566 (39%), Gaps = 81/566 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GN+YL KV RV P +Q+AF+D Sbjct: 1 MNEEILINVT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL +I HP + QT + + V G + Sbjct: 60 IGLERAAFLHVADIWHPR------------IAGEAQHQTPHQPIEKIVFEGQTLMVQVVK 107 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 A S + ++ + E + + + Sbjct: 108 DPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARL----------- 156 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + ++P KG I R I + L L Sbjct: 157 ---------------------------TAVLPADEKGGYIVRTIAEDATSEELAADVAYL 189 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 IL A + +D R+ + V +E + I+ Sbjct: 190 RKTW--ATILSQAQRMPPTSLLYQDLNLAQRVLRDF------------VNDETSRIQVDS 235 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 R+ + + DF P+ + + Y P+F IE ++ Sbjct: 236 RETH---------------QMLADFAAEFTPAVSSKLHHYTGERPLFDLYNIEAEIQRAL 280 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 281 SRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 340 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDME ++ V +LK++L +DR RV V S GL+EM+R+R R S+ Sbjct: 341 GGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV 400 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C+G G +++ +V +LR + Q+ V V+ L ++ + Sbjct: 401 LCEPCPVCQGKGQVKTARTVCYDVLREILRESRQFNPREFRVVAAQQVIDLFLEEESQHL 460 Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565 G +++ + L+ + + I Sbjct: 461 AMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|167903652|ref|ZP_02490857.1| ribonuclease E [Burkholderia pseudomallei NCTC 13177] Length = 557 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|329960939|ref|ZP_08299218.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057] gi|328532225|gb|EGF59029.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057] Length = 524 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 150/580 (25%), Positives = 266/580 (45%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL ++ ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + +SL Sbjct: 60 VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ LS AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W++ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E + E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIHVNNEAVFHEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 V+ S Y+II TEAL +DVNSG + ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRIKNANGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H + Y+ + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGLVSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPDQKLAFLEYIFYDLQGEEIDMKEE 520 >gi|319638922|ref|ZP_07993680.1| ribonuclease E [Neisseria mucosa C102] gi|317399826|gb|EFV80489.1| ribonuclease E [Neisseria mucosa C102] Length = 963 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 203/627 (32%), Positives = 313/627 (49%), Gaps = 9/627 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MPS Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + ++ + E + + ++++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKAARPEPAVKGVRHTQPAPTVAPEKKASWW 548 Query: 628 IRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + +R A ++ + N + N +G+ Sbjct: 549 DSFKAWLKRIFGGEPAPAAVAQEPAEKRTANNRGQNGDRRSSSRRQNPRRNNKHDGSKVE 608 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713 + E +S+ S +D Sbjct: 609 VREVNAEAADSKFEESKSNESRNDERK 635 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 62 TDRHGFLPFKEVSRSYFR 79 >gi|148255582|ref|YP_001240167.1| ribonuclease E [Bradyrhizobium sp. BTAi1] gi|146407755|gb|ABQ36261.1| RNAse E [Bradyrhizobium sp. BTAi1] Length = 1070 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 298/607 (49%), Positives = 393/607 (64%), Gaps = 3/607 (0%) Query: 98 TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157 D VA+ G+VTI +A+ + E+ I +DV P Sbjct: 287 ADLSPVAEHDDDGEVTIVPGDDNGVEPAVADHDDDDEDGEEIEEEVVESVGGDDVLEEVP 346 Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 E + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G Sbjct: 347 ERT-FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGG 405 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 ISRKIT+ DR LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+RLW+ VR+ Sbjct: 406 GISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGANRTKPEIKRDFEYLLRLWETVRD 465 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 + L S AP LVYEEG+LIKR++RDLY K+I EI+V+GE GYREA DFMK+LMP+ R V+ Sbjct: 466 MTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEILVAGEAGYREAHDFMKMLMPTNVRAVK 525 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 QY D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGR+TREH IED Sbjct: 526 QYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIED 585 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 TAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNRSVE+KL + L++DRAR+QVG Sbjct: 586 TALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRSVERKLSDCLRQDRARIQVG 645 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 IS+FGLLEMSRQRIR+SVLES+T+ C +C G G++RS SSVAL +LRS+EE L++ H Sbjct: 646 RISHFGLLEMSRQRIRASVLESSTEPCAHCGGTGHVRSVSSVALQLLRSLEETLMKGATH 705 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVN 576 N++V T ++V LY+LN KR + + E F VS+ V+ + + F I++G V L Sbjct: 706 NLVVRTRTEVALYVLNHKRGHLRDLENSFKVSLAVIADPNVSGQQSFIIDRGEQVHTLEA 765 Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + + + AP + E +DE +SE + + + E + +R RR Sbjct: 766 AKALLAAQASAPPLVAD-EVYDEDEPFDIETESEVETEETEGLSEEAAEASETERDGARR 824 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 +RR + + +S ++ E+ + P Sbjct: 825 KRRRRRRGRGGNEAREATPEGATAAESLEVGTAAELPAEDAETEDEDSDEQPAFASGDQP 884 Query: 697 VSTPEME 703 E Sbjct: 885 SDQANGE 891 Score = 172 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 101/195 (51%), Gaps = 6/195 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E +++ ++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEERAHREAEEESENRSNRRRNRHRSSRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 I +A+ + E +G Sbjct: 121 RGSGERVQSEI------IEAADASQAPHGETHEGDHGAFEAPDAAYAQDNHPADDAGAET 174 Query: 181 LVQIVKEERGNKGAA 195 Q A Sbjct: 175 PAQTAGFAEAPLEAP 189 >gi|237653102|ref|YP_002889416.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T] gi|237624349|gb|ACR01039.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T] Length = 1061 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 213/657 (32%), Positives = 305/657 (46%), Gaps = 44/657 (6%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + E + I E S+ +A D ++ Sbjct: 10 QAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDYGADRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + I+E +K Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP Sbjct: 70 FKEISRSYFQPGADAKASIKEALKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR++ + L+E L+VP GM +I RTA R+ E++ D YL++L Sbjct: 130 NNPRGGGVSRRVEGDERAE-LRENMDQLDVPQGMSLIARTAAIGRSAEELQWDLNYLLQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A L+Y+EG+L+ RAIRD + DI EI++ + + +A FM +MP Sbjct: 189 WTAIEGAAQGQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFEQATQFMAHVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V++Y D P+F R IE Q++S + +V LPS G V+I+ TEALVSIDVNSGR+T+ Sbjct: 249 NVARVKRYSDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSIDVNSGRATK 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA +TN EAA+EIARQLRLRDL GLIV+DFIDME KN R VE +L+++L+ DR Sbjct: 309 GSDIEETAFRTNCEAADEIARQLRLRDLGGLIVIDFIDMESAKNQREVENRLRDALRHDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ G IS FGLLE+SRQR+R ++ E++ C C G G+IRS S AL I+R +EE Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCNGTGHIRSTESSALHIVRILEEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + DV +LLN+KR I E R V + +V L I + Sbjct: 429 MKDNTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPAHEIIRLRHD 488 Query: 572 Q--ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ------------- 616 Q + D + + P + + Q Sbjct: 489 QLNTEDIALASYQMVQKPVEEDTRLPSKANERPARPEAAVKGIAPAQPAPMAAPEPAPAS 548 Query: 617 -------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 +R R R + + G + Sbjct: 549 APAPAAPEPKGLIARIMGWFSAGKGAAEPVPAPVVEETPKREARPRGERSGEGRRNGGSN 608 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + D S E E + E + Sbjct: 609 GGRGRRGERDGEAQPSTRGSRAERGESTERPQRVAAERAERPERAERPERAERPERA 665 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K++ K NIY A +TR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+Q P +D +A +KE+ + + G+ Sbjct: 62 ADRHGFLPFKEISRSYFQ-PGADAKASIKEALKEGQELIVQVEKDERGN 109 >gi|90424351|ref|YP_532721.1| ribonuclease [Rhodopseudomonas palustris BisB18] gi|90106365|gb|ABD88402.1| RNAse E [Rhodopseudomonas palustris BisB18] Length = 1029 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 271/480 (56%), Positives = 354/480 (73%), Gaps = 5/480 (1%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+ Sbjct: 297 EEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 356 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKIT+ DR LKE+ + L+VP GMG+ILRTAGASRTK EIKRDFEYL+R+W+ Sbjct: 357 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWET 416 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM++LMPS R Sbjct: 417 VRDMTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMQMLMPSNVR 476 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+QY D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGRSTREH Sbjct: 477 AVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 536 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+K+ + L++DRAR+ Sbjct: 537 IEDTALKTNIEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKISDCLRQDRARI 596 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 Q+G IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS +SVAL +LR +EE L++ Sbjct: 597 QIGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVASVALQLLRGLEEILMKG 656 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573 HN+IV T +DV LY+LN KR + + E F VS+ V+ + + F I++G V Sbjct: 657 ATHNLIVRTRNDVALYVLNHKRGHLRDLEDSFRVSLTVIADPTVTGQQSFVIDRGEQVHT 716 Query: 574 LVNTGHKVGSD----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 L + + P + + ++ EA + ++ L D Q E+ Sbjct: 717 LEAAKALLAAQVAAFPPQPDEPYDDDDQFEFEAEIETDETVGLADDQQGAEPGETEAEAE 776 Score = 172 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 74/154 (48%), Positives = 97/154 (62%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR AL++ A ++E +++ ++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALIEADERAHREAEEESENRSNRRRPRHRNSRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 + + + D D + Sbjct: 121 RGNGERVQSDVIDAVATDGAQSEDHEHGHPDQQQ 154 >gi|21242846|ref|NP_642428.1| ribonuclease E [Xanthomonas axonopodis pv. citri str. 306] gi|21108335|gb|AAM36964.1| ribonuclease E [Xanthomonas axonopodis pv. citri str. 306] Length = 1221 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 211/618 (34%), Positives = 321/618 (51%), Gaps = 9/618 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + +G + + P S++ Q V EE+ + Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAP 547 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 GVV + I ++ + P + G + +E Sbjct: 548 VAAPVPVVTVPIPAPVTGVVGWLKRIFGGVEP---VAPAPESTPRPRQNDAGRNNRSERG 604 Query: 691 DVSIPPVSTPEMESSNSS 708 + + + +S Sbjct: 605 ERGGQRRDGRDARNGGNS 622 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|171463175|ref|YP_001797288.1| ribonuclease, Rne/Rng family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192713|gb|ACB43674.1| ribonuclease, Rne/Rng family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 865 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 205/598 (34%), Positives = 309/598 (51%), Gaps = 13/598 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITHIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R I++ ++ Q ++VQ+ KEERG KGAA+T+++SLAGRY VLMPN Sbjct: 72 EVARSYFKEGIDVRNASIKDALREGQEIIVQVEKEERGQKGAALTSFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E LEVP G+ +I RTAG R E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LREAMSQLEVPDGISIIARTAGIGRDATELQWDLSYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E A + AP L+Y E NL+ RAIRD + DI EI++ + Y +A FM ++MP Sbjct: 191 KAIDEAAKGNSAPLLIYLESNLVIRAIRDYFQPDIGEILIDTDDIYEQAAAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y+D P+F R IE Q+++ V LPS G ++I+ TEALVS+DVNS R+TR Sbjct: 251 LPRVKRYQDDVPLFSRFQIEHQIETACSRTVPLPSGGAIVIDHTEALVSVDVNSARATRG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+EIARQ RLRDL+GLIV+DFIDME K + VE +L+++L+ DRA Sbjct: 311 SDIEETATRTNLEAADEIARQARLRDLSGLIVIDFIDMESSKAQKDVENRLRDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+EMSRQR+R ++ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISKFGLMEMSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KRA +++ E RF V++ +V L + +E+ Sbjct: 431 KENTAAIHTQVPVEVAAFLLNEKRAEVIKIETRFKVNVLMVPNKHLETPHYKLERLRHDD 490 Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 L + +A + V + +A + + +++ I + Sbjct: 491 PRLDDQKASYVMAEEAARELETDTTVSKKDADVKVRPEAAVKGITPTQPA-------PIS 543 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + R R A G + + + PS+ N N N Sbjct: 544 QPRPARTEKAKAVSTTGGFFEFIKSLFGSSPAVEEKPAPSNNRGRNQGRNSDRNRGRN 601 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 62/108 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +T +EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITHIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 RHGFLPF E+ Y++ R A +K++ + + G Sbjct: 62 EERHGFLPFKEVARSYFKEGIDVRNASIKDALREGQEIIVQVEKEERG 109 >gi|225075562|ref|ZP_03718761.1| hypothetical protein NEIFLAOT_00575 [Neisseria flavescens NRL30031/H210] gi|224953107|gb|EEG34316.1| hypothetical protein NEIFLAOT_00575 [Neisseria flavescens NRL30031/H210] Length = 984 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 205/629 (32%), Positives = 314/629 (49%), Gaps = 11/629 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 34 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 93 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 94 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 153 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 154 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 212 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 213 WQAIEEAGKAHHYPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVSEFMSYVMPG 272 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 273 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 332 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 333 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 392 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 393 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEA 452 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 453 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 512 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + ++ + E + ++++ Sbjct: 513 DVEGDGEPSYKRVAEPEEDESAKPFGGERAKAARPEPAVKGVRHTSPAPTAAPGKKTSWW 572 Query: 628 IRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + +R A ++ + N +S N +G+ Sbjct: 573 DSFKAWLKRIFGGEPAPAAVAPEPTEKRTANNRSQNSNRRSNSRRQNPRRNNKHDGSKVE 632 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + V + E+ ++ S +K Sbjct: 633 VREVNA--EAVDSKFEENKSNESRNDERK 659 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 26 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 85 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 86 TDRHGFLPFKEVSRSYFR 103 >gi|167739573|ref|ZP_02412347.1| ribonuclease E [Burkholderia pseudomallei 14] gi|167846679|ref|ZP_02472187.1| ribonuclease E [Burkholderia pseudomallei B7210] Length = 555 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|39935516|ref|NP_947792.1| ribonuclease Rne/Rng family [Rhodopseudomonas palustris CGA009] gi|39649368|emb|CAE27891.1| putative ribonuclease E [Rhodopseudomonas palustris CGA009] Length = 1051 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 297/585 (50%), Positives = 394/585 (67%), Gaps = 6/585 (1%) Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171 V ++ + E E++ + + V S D + + +RQY IQ Sbjct: 271 VEGEHEVETDSDTEAEAEDDEEEDDEEEAEEDVVESVGGDDVLEEVPERAFRPRRQYKIQ 330 Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 EVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G ISRKIT+ DR Sbjct: 331 EVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSR 390 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 LKE+ + L+VP GMGVILRTAGASRTK EIKRDFEYL+R+W+ VR++ LNS AP LVYEE Sbjct: 391 LKEVVQDLDVPEGMGVILRTAGASRTKPEIKRDFEYLIRMWETVRDVTLNSQAPKLVYEE 450 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 G+LIKR++RDLY K+I E++V+GE GYREA+DFM +LMPS R V+ Y D P+F R G+ Sbjct: 451 GSLIKRSLRDLYNKEIDEVLVAGEAGYREARDFMHMLMPSQVRAVKLYRDGQPLFSRMGV 510 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E QLD++ V L S GY++INQTEALVSIDVNSGRSTREH IEDTAL+TN+EAAEE+A Sbjct: 511 ESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNMEAAEEVA 570 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+QVG IS+FGLLEMSRQR Sbjct: 571 RQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQR 630 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 IR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++ HN+IV T +DV LY+ Sbjct: 631 IRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEVLMKGATHNLIVRTRTDVALYV 690 Query: 532 LNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG---HKVGSDSQA 587 LN KR + + E F VS++V+ + + F I++G V L + S A Sbjct: 691 LNHKRGHLRDLETGFRVSLSVLADPTVSGQQSFVIDRGEQVHTLETAKALLAAQIAASPA 750 Query: 588 PSYDKNIECVWQDEALLPIPKSES-LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 P + + + EA + ++ ED ES G R+RRRRRRR + + Sbjct: 751 PLDEPEDDDGYDFEAEIETDETVGLAEDQGSEAGESESEGRKRRRRRRRRRSGEPREAAE 810 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 AG V + Q + + + E + ++ A + + Sbjct: 811 AGAVGEDGE-QPFVSEGVEQVGEADEGDEAGEDDSDAEARADQGE 854 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 98/166 (59%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E + + + H Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSSRRRSRHRSHRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 + + ++ + ++ Sbjct: 121 RNNGERVQSEIVEAATDVAAEQPHEAADHHEAHEAGAHAEAERLMH 166 >gi|218767111|ref|YP_002341623.1| ribonuclease E [Neisseria meningitidis Z2491] gi|121051119|emb|CAM07390.1| ribonuclease E [Neisseria meningitidis Z2491] Length = 919 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 207/668 (30%), Positives = 316/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEENESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRHSKREGSKVEVREV 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI-------VKK 715 + + + NG E D + + E++ N + Sbjct: 609 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNVQPAAPVADAAPSETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 VQTGKRRR 676 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|262198665|ref|YP_003269874.1| ribonuclease, Rne/Rng family [Haliangium ochraceum DSM 14365] gi|262082012|gb|ACY17981.1| ribonuclease, Rne/Rng family [Haliangium ochraceum DSM 14365] Length = 543 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 168/565 (29%), Positives = 276/565 (48%), Gaps = 55/565 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +L+ + ETRV V+ + + E ES+ + I GNIY +V+RV P +QA Sbjct: 1 MSENLLVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQA---- 56 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F+++ P + A + D+ D Sbjct: 57 ---------AFVDLGP-----------------------TVERAGFLYVADILGAAD--- 81 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + + + + + K+ I++++K Q + Sbjct: 82 --------------ERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDLLKADQEV 127 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T YLSL GRY+V MP + +SR+I++ +R+ L++I + Sbjct: 128 LVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAV-QQVGVSRRISSEAERRRLRKIVTSVG 186 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +G G I+RTA EI+ D +YL+RLW ++ + P L+Y + +L+ R IR Sbjct: 187 HKSG-GFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLVLRTIR 245 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL D EI++ E+ Y A+ F +P ++QY PIF G+E +L + Sbjct: 246 DLLRADTKEIVIDDEEQYDRARKFTMAFLPPAVDRIKQYRGRQPIFDHYGVEAELRTALG 305 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S G ++I+Q EAL +IDVN+G + +E+T + N+EA E+ARQLRLR++ Sbjct: 306 RRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQLRLRNIG 365 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV+DF+DM+++ N + V L ++L DR+R + IS GL+EM+R+R R S+ + Sbjct: 366 GIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRESLNQLL 425 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T+ C C G+G ++S ++VA +LR V A +I V V L +R + Sbjct: 426 TEACPTCSGSGVVKSTTTVAHEVLREVRRLGSHAEADSIDVECAPVVADLLDKYERGYLD 485 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E +F + + + + Sbjct: 486 ELEKKFQKKVVIQSNGGYRPDQYQV 510 >gi|227111671|ref|ZP_03825327.1| ribonuclease E [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1111 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 204/665 (30%), Positives = 310/665 (46%), Gaps = 59/665 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++S+++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 428 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMQTPHYSVVRVR 487 Query: 570 PVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPI---------------------- 606 + + + ++ + + + + P Sbjct: 488 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETAPSIAKAAP 547 Query: 607 ---------------------------PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + D D+ +EE +R RR RR Sbjct: 548 AAAKPAEVAQPGLVSRLFSALKSVFASEPAVKAADSVDDKKAEEEKSTEGQRPERRNSRR 607 Query: 640 PATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + D G + + + D + + A E P Sbjct: 608 QGNNRRDRGSRDNRDNRDNRDNREQRDEQRRNKRQNEEAITDTRAAENAEKSSSEEQPRR 667 Query: 699 TPEME 703 P E Sbjct: 668 EPRAE 672 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 Score = 37.6 bits (85), Expect = 7.6, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 2/137 (1%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 I + + + + + + + +A ++D Sbjct: 639 NKRQNEEAITDTRAAENAEKSSSEEQPRREPRAERQRRRQDDRRQAPTEAKAQPVIDDAD 698 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--VVSDVSSIQNVIDDSFDMYMEPSDIT 674 D+ ++ + RR+RR+ + DA +SD ++ + Y++PSD Sbjct: 699 DSAAEQDKPTQVMPRRQRRQLTQKVRVQSDAQQDTLSDSTAPVAAPSEQVQTYVKPSDAA 758 Query: 675 NHNLLENGAHGFTENYD 691 N + + Sbjct: 759 VDNNEVDNEQNDANRAN 775 >gi|254672160|emb|CBA04975.1| ribonuclease E [Neisseria meningitidis alpha275] Length = 927 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 207/668 (30%), Positives = 316/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPKPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRHSKREGSKVEVREV 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI-------VKK 715 + + + NG E D + + E++ N + Sbjct: 617 AGKTAGQEARADKAETRNNGNRRRNERGDRAAERANEAEIQDRNVQPAAPVADAAPSETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 VQTGKRRR 684 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 70 TDRHGFLPFKEVSRSYFQ 87 >gi|170751038|ref|YP_001757298.1| ribonuclease [Methylobacterium radiotolerans JCM 2831] gi|170657560|gb|ACB26615.1| ribonuclease, Rne/Rng family [Methylobacterium radiotolerans JCM 2831] Length = 1043 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 282/464 (60%), Positives = 355/464 (76%), Gaps = 1/464 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++RQY IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 338 RPRHYRRQYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 397 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKE+ + LEVP GMGVILRTAGASR+K EI RDFEYLMRLW++VREL Sbjct: 398 SRKITSAADRKRLKEVVQDLEVPEGMGVILRTAGASRSKPEIARDFEYLMRLWESVRELT 457 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L S+AP LVYEEG+LIKRAIRDLY KD+ E++V+GE YREAKDFM++LMP +++V+ Y Sbjct: 458 LTSMAPALVYEEGSLIKRAIRDLYNKDLDEVLVAGEDAYREAKDFMRMLMPGQSKVVKPY 517 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 D PIF R G+E QLD++ T V+L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 518 RDSTPIFARFGVEQQLDAMFSTHVSLKSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 577 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKL E LK DRAR+QVG I Sbjct: 578 LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLNECLKNDRARIQVGRI 637 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQRIR+ VLES++ C +C G+G++R+ +SVAL ILRS+EE LL+ +HN+ Sbjct: 638 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATASVALHILRSIEEVLLKSASHNL 697 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578 ++ T +++ LY+LNQKR + E E RFGV+I + L A F +++G P Q Sbjct: 698 VLRTRTEIALYILNQKRGHLRELEVRFGVTITIAADERLAATTPFQLDRGEPAQRAEGPV 757 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 V + + +P+ + + E DEA ++ + + Sbjct: 758 TGVRAQAISPAMEFDDEDEEADEAEAETESEGEADEGRAEARED 801 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 102/168 (60%), Gaps = 1/168 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA H EETRVV + +RVEE DFE+ +++Q++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDAMHPEETRVVTVHGSRVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+E + + Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPLADRQALLEEEARDAEEHREREERRRRSSSRRSRGRRA 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 E A A+ + + E++ +A + + V + G P P Sbjct: 121 EARARGADETV-SAEDTHAAAEGEDQAEVRNESGIDPAVQPDTLAENP 167 >gi|166712252|ref|ZP_02243459.1| ribonuclease E [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1236 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 214/639 (33%), Positives = 326/639 (51%), Gaps = 16/639 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 7 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVEKEERGNKGAALTTFISLAGRYMVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQNALKYD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 485 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + G + +A L IP ++ I+ + + Sbjct: 486 NELGEDNGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREETPAA 541 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P I + G + E Sbjct: 542 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERG 601 Query: 691 DVSIPPVSTPEME-------SSNSSSDPIVKKTRWWKRR 722 + + + + K+ R +R+ Sbjct: 602 ERGGQRRDGRDARHGGHSGNQQRGNGNGANKERRDERRQ 640 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 42/107 (39%), Positives = 62/107 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + + G+ Sbjct: 61 RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVEKEERGN 107 >gi|316934393|ref|YP_004109375.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris DX-1] gi|315602107|gb|ADU44642.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris DX-1] Length = 1053 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 291/566 (51%), Positives = 387/566 (68%), Gaps = 5/566 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 I D + + + + E++ + + V S D Sbjct: 258 IEGNDEAEDGHEAHDDHAEHEPETDTDTETEAGAEDDDEEDDEEDAEEDVVESVGGDDVL 317 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+ Sbjct: 318 EEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 377 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKIT+ DR LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+R+W+ Sbjct: 378 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKPEIKRDFEYLIRMWET 437 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VR++ L S AP LVYEEG+LIKR++RDLY K+I E++V+GE GYREA+DFM++LMPS R Sbjct: 438 VRDVTLKSQAPMLVYEEGSLIKRSLRDLYNKEIDEVLVAGEAGYREARDFMQMLMPSQVR 497 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+ Y D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGRSTREH Sbjct: 498 AVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 557 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+ Sbjct: 558 IEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARI 617 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++ Sbjct: 618 QVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEVLMKG 677 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573 HN+IV T +DV LY+LN KR + + E F VS++V+ + + F I++G V Sbjct: 678 ATHNLIVRTRTDVALYVLNHKRGHLRDLETGFRVSLSVLADPTVSGQQSFVIDRGEQVHT 737 Query: 574 LVNTG---HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIR 629 L + S AP + + ++ EA + ++ L D Q + + +S R Sbjct: 738 LETAKALLAAQIAASPAPIDEPEDDDGYEFEAEIETDETVGLADEQASEAGDTDSENRKR 797 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSS 655 +RRRRRRR + +AG V + Sbjct: 798 RRRRRRRRSGEPREAAEAGAVCEDGE 823 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 98/161 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E ++ + + H Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEQRSSRRRSRHRSHRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161 + A D V + D Sbjct: 121 RNNGERVQSEIVETSADQLDATVDQPDAVVEHHEAQETDAY 161 >gi|167919897|ref|ZP_02506988.1| ribonuclease E [Burkholderia pseudomallei BCC215] Length = 560 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|167816776|ref|ZP_02448456.1| ribonuclease E [Burkholderia pseudomallei 91] Length = 552 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|294668134|ref|ZP_06733241.1| ribonuclease E [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309842|gb|EFE51085.1| ribonuclease E [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 960 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 206/645 (31%), Positives = 320/645 (49%), Gaps = 28/645 (4%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQEV+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQEVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK+ L+VPAGM +I RTAG R+ E++ DF+YL++L Sbjct: 130 NNPRGGGVSRRIEGDERQE-LKDAMAELDVPAGMSLIARTAGIGRSVEELQWDFDYLLKL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V E+ + E +FM +MP+ Sbjct: 189 WRAIEEAGEAHREPYLLFMESSLLIRAIRDYFRPDIGEILVDNEEVHTEISEFMSYVMPN 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NVSRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRSD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKN----IECVWQDEALLPIPKSESLEDIQDNIVSE----- 622 + ++ + D E V + + + Sbjct: 489 DVEEDGAPSYKRVAEPEADDNAKPFGNERVKASRPEPAVKGVKHNQPAPVVAERPAGWWD 548 Query: 623 ---------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 E +++ R ++ + S+ + +++ Sbjct: 549 KFKAWFKGLFGGGTMEQPQEESRKQSSGNSRHSSSRRRGNRRGAGRSAGGEMRNNASRSD 608 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + ++ T + + + E N + Sbjct: 609 VADAEETKTDNAKTDSRRSNGRRGADSRNADGRNAEGRNGNRRRN 653 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|192291107|ref|YP_001991712.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris TIE-1] gi|192284856|gb|ACF01237.1| ribonuclease, Rne/Rng family [Rhodopseudomonas palustris TIE-1] Length = 1053 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 296/586 (50%), Positives = 393/586 (67%), Gaps = 6/586 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 + + + E E++ + + V S D + + +RQY I Sbjct: 272 EGEHEVETDSDSDTEAEAEDDEEEDDEEEAEEDVVESVGGDDVLEEVPERAFRPRRQYKI 331 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 QEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT++G ISRKIT+ DR Sbjct: 332 QEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRS 391 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 LKE+ + L+VP GMGVILRTAGASRTK EIKRDFEYL+R+W+ VR++ LNS AP LVYE Sbjct: 392 RLKEVVQDLDVPEGMGVILRTAGASRTKPEIKRDFEYLIRMWETVRDVTLNSQAPKLVYE 451 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 EG+LIKR++RDLY K+I E++V+GE GYREA+DFM +LMPS R V+ Y D P+F R G Sbjct: 452 EGSLIKRSLRDLYNKEIDEVLVAGEAGYREARDFMHMLMPSQVRAVKLYRDGQPLFSRMG 511 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 +E QLD++ V L S GY++INQTEALVSIDVNSGRSTREH IEDTAL+TN+EAAEE+ Sbjct: 512 VESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNMEAAEEV 571 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+QVG IS+FGLLEMSRQ Sbjct: 572 ARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQ 631 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 RIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++ HN+IV T +DV LY Sbjct: 632 RIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEVLMKGATHNLIVRTRTDVALY 691 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG---HKVGSDSQ 586 +LN KR + + E F VS++V+ + + F I++G V L + S Sbjct: 692 VLNHKRGHLRDLETGFRVSLSVLADPTVSGQQSFVIDRGEQVHTLETAKALLAAQIAASP 751 Query: 587 APSYDKNIECVWQDEALLPIPKSES-LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 AP + + + EA + ++ ED ES G R+RRRRRRR + Sbjct: 752 APLDEPEDDDGYDFEAEIETDETVGLAEDQGSEAGESESEGRKRRRRRRRRRSGEPREAA 811 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 +AG V + Q + + + E + ++ A + + Sbjct: 812 EAGAVGEDGE-QPFVSEGVEQVGEADEGDEAGEDDSDAEARADQGE 856 Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 98/166 (59%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E + + + H Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSSRRRSRHRSHRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 + + ++ + ++ Sbjct: 121 RNNGERVQSEIVEAATDVAAEQPHEAADHHEAHEAGAHAEAERLMH 166 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 32/141 (22%), Gaps = 5/141 (3%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 Q D I SE ++ RR + Sbjct: 913 SPSVQPSFEPAAEAEQPHDAPPHDIVPSEPQHTAATAAPDTSDPSAEDDSAAKKAARRRS 972 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 T + ++ + + + ++ EP+ A E Sbjct: 973 TVREKVSFGASAAASETTAEAAAEVQPEPTAQAEQPATAAPAVEAPAAEAAPQAAAQPAE 1032 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 SS ++ WW RR Sbjct: 1033 EPSSA-----APRRVGWWSRR 1048 >gi|296158257|ref|ZP_06841089.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1] gi|295891593|gb|EFG71379.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1] Length = 1086 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 197/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KRA I + E+RF V++ ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + PK E+ S V Sbjct: 491 DDARLDEPRASWKMAEEAARELESETGYSKRIEEVKPKQEAAVKGITPEKPAPSAPVRP 549 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|310767298|gb|ADP12248.1| ribonuclease, Rne/Rng family protein [Erwinia sp. Ejp617] Length = 1206 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 200/663 (30%), Positives = 313/663 (47%), Gaps = 39/663 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 368 RARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 428 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE----------------ALLPIPKSESLE 613 + + + + +A + E + + L +E Sbjct: 488 SGEEIQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPALQEAVAEPAA 547 Query: 614 DIQDNIVSEESTGVIR---------------KRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 ++ + + + P + A + +N Sbjct: 548 PKAAVKTPAPASAQPGLFSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAEAPAPRGERRN 607 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + ++ E + S E +N + + + Sbjct: 608 HRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEAREGREDRRNN 667 Query: 719 WKR 721 +R Sbjct: 668 QRR 670 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 43/176 (24%), Gaps = 9/176 (5%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ--------APSYDKNIECVWQ 599 + + + +A G + Q + + Sbjct: 573 KKLFAAPEKPAEQPQPPVAEEKSAEAPAPRGERRNHRRQNNRRDRNGDRNERNDRSGERN 632 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 D + +S + + + E+ RR +RR TD +V D Sbjct: 633 DRSAERNERSAAQSERAPRERNNEAREGREDRRNNQRRNPQQTDARSERMVPDEFERSET 692 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTEN-YDVSIPPVSTPEMESSNSSSDPIVK 714 + N E + E + + V PE+ + P K Sbjct: 693 TQPRQPRQDRQRRRSGQNQEEKRSLVQEEKIPEPVVENVPAPEVLEESVQVMPRRK 748 >gi|167895268|ref|ZP_02482670.1| ribonuclease E [Burkholderia pseudomallei 7894] Length = 546 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 195/539 (36%), Positives = 297/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A P+ E+ S R Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQR 546 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|170732421|ref|YP_001764368.1| ribonuclease [Burkholderia cenocepacia MC0-3] gi|169815663|gb|ACA90246.1| ribonuclease, Rne/Rng family [Burkholderia cenocepacia MC0-3] Length = 1056 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 199/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + NS P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSAAPQR 549 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|167837372|ref|ZP_02464255.1| ribonuclease E [Burkholderia thailandensis MSMB43] Length = 559 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|119469427|ref|ZP_01612366.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of [Alteromonadales bacterium TW-7] gi|119447291|gb|EAW28560.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of [Alteromonadales bacterium TW-7] Length = 564 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 188/512 (36%), Positives = 289/512 (56%), Gaps = 6/512 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D ++ Sbjct: 12 EEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + F + I++VIK Q +++Q+ KEERG KGAA+TT++S+AG Y VLMP Sbjct: 72 EIARTYFPAGYTFNGRPNIRDVIKEGQEVIIQVDKEERGQKGAALTTFISVAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ E+ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +R+ A ++ AP L+++E N+I RAIRD +DI EI++ + + EAK ++ P Sbjct: 191 WEAIRQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS ++T+ Sbjct: 251 FMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +LK++ + DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ E++ VC C G G +RS S+ALSILR +EE Sbjct: 371 ARVQIGKISRFGLLEMSRQRLRPSLGEASQGVCPRCSGQGTVRSNESIALSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + V YLLN++R ++ E + ++ + + + + Sbjct: 431 IKDNTSQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETPHYEVMRLRKD 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + L ++ + +++ + Sbjct: 491 ETLETVSYEQVVAPEPEAFEMSKSPAAPVREE 522 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI Y+ Sbjct: 62 ADRHGFLPLKEIARTYF 78 >gi|224825745|ref|ZP_03698849.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002] gi|224601969|gb|EEG08148.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002] Length = 1002 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 214/640 (33%), Positives = 315/640 (49%), Gaps = 39/640 (6%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V++ ++VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP Sbjct: 70 FKEVSRSYFQNYEGGRPRIQDVLREGMEVMVQVEKDERGNKGAALTTYISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK++ LEVP GM +I RTAG RT E++ D YL++L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKDLLAQLEVPQGMSLIARTAGIGRTFEELQWDLNYLLQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A P L+ +EG+L+ RAIRD Y DI EI++ E+ + +A+ FM +MP+ Sbjct: 189 WRAIEGAAGAQSGPLLILQEGSLVIRAIRDYYQPDIGEILIDTEEIHEQARQFMAHVMPN 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V+ Y+DP P+F R IE Q+++ V LPS G ++I+ TEALVS+DVNS R+T+ Sbjct: 249 TINRVKLYQDPVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSVDVNSARATK 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL+TNLEAAEEIARQLRLRDL GLIV+DFIDME +KN R VE +L++ LK DR Sbjct: 309 GADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMEIQKNQREVENRLRDVLKHDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ S+ E++ + C C G G+IR S AL ILR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHILRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA I E R VS+ ++ I L + I + Sbjct: 429 MKENTGAVHAQVPVDVATFLLNEKRAEIYSIEERLDVSVVLIPNIHLETPHYKIVRVRHD 488 Query: 572 QALV-------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + A + Q+ A+ I + ++ + E Sbjct: 489 DMSELGDLPSYSRVEIQEEEGTANFGQAKPKIERQEAAVKGITPLQPAPEVAAPVAPVEQ 548 Query: 625 TGVIRKRRRR---------------------------RRRRRPATDHHDAGVVSDVSSIQ 657 + ++ P + + Sbjct: 549 PVAAAAAPVQSAGLIERLVGWFKSVLAPAEPAKPAPVEVKKEPVREQRNPRSRQGDRRHG 608 Query: 658 N-VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 N V D + + + A E Sbjct: 609 NQVRRDRDERRQGGAQQEDRRRPAAPAEARGEAGQEPQAR 648 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 55/78 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|206559375|ref|YP_002230136.1| putative ribonuclease E [Burkholderia cenocepacia J2315] gi|206561223|ref|YP_002231988.1| ribonuclease E 1 [Burkholderia cenocepacia J2315] gi|198035413|emb|CAR51289.1| putative ribonuclease E [Burkholderia cenocepacia J2315] gi|198037265|emb|CAR53187.1| ribonuclease E 1 [Burkholderia cenocepacia J2315] Length = 1054 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 197/539 (36%), Positives = 297/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSPAPQR 549 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|167825183|ref|ZP_02456654.1| ribonuclease E [Burkholderia pseudomallei 9] Length = 553 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 137 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|218130463|ref|ZP_03459267.1| hypothetical protein BACEGG_02052 [Bacteroides eggerthii DSM 20697] gi|317473946|ref|ZP_07933225.1| rne/Rng family ribonuclease [Bacteroides eggerthii 1_2_48FAA] gi|217987342|gb|EEC53672.1| hypothetical protein BACEGG_02052 [Bacteroides eggerthii DSM 20697] gi|316909788|gb|EFV31463.1| rne/Rng family ribonuclease [Bacteroides eggerthii 1_2_48FAA] Length = 524 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 265/580 (45%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + +SL Sbjct: 60 VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ LS AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W+ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKATKFPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E + E +D++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 V+ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H + Y+ + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGVLSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYIFYDPQGEEIDMKEE 520 >gi|256822393|ref|YP_003146356.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069] gi|256795932|gb|ACV26588.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069] Length = 951 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 215/642 (33%), Positives = 320/642 (49%), Gaps = 28/642 (4%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R+ L+ +N + A+ D D+ I ++ I E S+ +A D Sbjct: 2 RRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVDY 61 Query: 146 VSNVED----VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + + + I+E +K Q ++VQI KEERGNKGAA+TT +S Sbjct: 62 GAERHGFLPLKEVAREYMQNAPSRGRPTIKEALKEGQEIIVQIDKEERGNKGAALTTSIS 121 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAG Y VLMPN + ISR+I + LK++ L VP GMG I+RTAG ++ EI Sbjct: 122 LAGSYLVLMPNNPRAGGISRRIEGDERTE-LKQVMSQLPVPNGMGCIVRTAGIGKSLEEI 180 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + DF YL+ W+ ++++A AP L+ +E ++I RAIRD DI EII+ + Y Sbjct: 181 QYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPEIYERV 240 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K ++ P + V+ Y D P+F R +E Q++S Q EV LPS G V+ +QTEAL+S Sbjct: 241 KSELQYQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEALLS 300 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NS R+T+ IE+TAL TN+EAAEEIARQLRLRD+ GLIV+DFIDM +N R VE+ Sbjct: 301 IDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREVER 360 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK+S+ +DRAR+Q+G IS FGLLEMSRQR+R S+ ES+ VC C G+G IR S+AL Sbjct: 361 VLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSLAL 420 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 SILR +E+ ++ + + +V +LLN+KR I + E R V + VV L Sbjct: 421 SILRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPYLETP 480 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSESLEDIQDNI 619 + + + + L ++ + + D+ ++ + D+ L K S Sbjct: 481 HYEVLRVKAGETLEDSSYSLIGDAPEIELVRSSKQPAPVSDQPALKGVKPTSPPPAPSKA 540 Query: 620 VSEESTG---------------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 V ++ G + R + R + G +N Sbjct: 541 VKKKKPGLFARLWTSLFGDDEDKKKKDKQSKNNRGKYDRNTRGRNTRHQGKKRTNQKGRN 600 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + N ++ G + P Sbjct: 601 QTQAQNKNQPQEQRDGKDNKVQQKTGGRPQKKQNDKPQRKQT 642 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 1/110 (0%) Query: 3 NKMLIDAS-HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +MLI+A+ H EE RV ++ R+ +LD E ++Q KGNIY KVTR+EPSL+AAFVDY Sbjct: 2 RRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVDY 61 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 G RHGFLP E+ +Y Q S + +KE+ + D G+ Sbjct: 62 GAERHGFLPLKEVAREYMQNAPSRGRPTIKEALKEGQEIIVQIDKEERGN 111 >gi|329954387|ref|ZP_08295479.1| S1 RNA binding domain protein [Bacteroides clarus YIT 12056] gi|328527655|gb|EGF54648.1| S1 RNA binding domain protein [Bacteroides clarus YIT 12056] Length = 524 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 152/580 (26%), Positives = 265/580 (45%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + +SL Sbjct: 60 VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ LS AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W+ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKATKYPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E + E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 V+ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H + Y+ + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGVLSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYIFYDPQGEEIDMKEE 520 >gi|209695669|ref|YP_002263598.1| ribonuclease E [Aliivibrio salmonicida LFI1238] gi|208009621|emb|CAQ79917.1| ribonuclease E [Aliivibrio salmonicida LFI1238] Length = 1015 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 190/545 (34%), Positives = 297/545 (54%), Gaps = 13/545 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D ++ Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGADRHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ V+ + ++ AP L+++E N+I RAIRD +DI EI++ K + A+ ++L+ P Sbjct: 191 WEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ YE P+F IE Q++S EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKLYEGEVPLFSHYQIESQIESAFDREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V + +V ++ F + + Sbjct: 431 LKDNTTQVLAVVPVAIASYLLNEKRRSVQHIEKFHNVRVIIVPNSDMETPHFEVVRIREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIE-------CVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + + +A + E ++E +L + + E+ Sbjct: 491 EEQEMLSYLLPKNLEALREAEAKETPAMYSAPKKREEPVLQGFSAPTQAAPMSKAPEEKI 550 Query: 625 TGVIR 629 Sbjct: 551 AEPKT 555 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 +RHGFLP EI +Y YQ + + L + + + + Sbjct: 62 ADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNK 112 >gi|84684929|ref|ZP_01012829.1| ribonuclease, Rne/Rng family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667264|gb|EAQ13734.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium HTCC2654] Length = 958 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 267/573 (46%), Positives = 353/573 (61%), Gaps = 2/573 (0%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE--SIISA 141 D + + + + DD S + S E + + Sbjct: 170 EDVDDAEEGAEASDEAEASGDDDTDAKPSRSRRSRSRSRSRSRSRPSDEEDAKPVDAAEK 229 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ + S +D K R+Y IQEV+K RQILLVQ+VKEERGNKGAA+TTYLS Sbjct: 230 DDTIESVADDDDHEDIRPPRKPRPRKYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLS 289 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPNT++G ISRKITN VDRK LKEIA L+VP G G+I+RTAGA RTK EI Sbjct: 290 LAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIATSLDVPKGAGLIVRTAGAKRTKTEI 349 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRD+EYL R+W+ +REL L S AP +YEEG+LIKR+IRDLY KDI E++V GE GYR A Sbjct: 350 KRDYEYLQRMWEQIRELTLKSTAPAKIYEEGDLIKRSIRDLYNKDIDEVLVEGEGGYRIA 409 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 KDFMK++MPS+A+ V+ Y D P+F R +E L S+ V L S GY++I TEALV+ Sbjct: 410 KDFMKMIMPSHAKNVKNYHDQLPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEALVA 469 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +VEK Sbjct: 470 IDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNNAVEK 529 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 KLK+ LK DRAR+QVG IS FGLLEMSRQR+R ++E+TT+ C +C G G IRS ++AL Sbjct: 530 KLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCAHCHGTGLIRSDDNLAL 589 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +ILR +EE + + +++ +V +L+N KR I + EAR+G++I + L Sbjct: 590 NILRQLEEEGTRGRSKEVLLKAPVGIVNFLMNVKREHIAQIEARYGMAIRLEADPFLISP 649 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F IEK V A + E + + ++ + ++ Sbjct: 650 DFEIEKFKTATRSVAEVTAPVVSVDASLMEDLDEDIEDETEEDQSEETSEASETNEDDDQ 709 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + R+RR R R + +D + Sbjct: 710 PKKKRRRRRRRGGRGRNKSRSDEDGDESGDEAQ 742 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 76/148 (51%), Positives = 93/148 (62%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ALL+E E + + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLEEERAYAEALEREEEGRKSRRSAPRAEETR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSN 148 + + ++ + I Sbjct: 121 SDDEVVTKDAEPQGMDVIDLDEGGEADE 148 >gi|325292698|ref|YP_004278562.1| ribonuclease E [Agrobacterium sp. H13-3] gi|325060551|gb|ADY64242.1| ribonuclease E [Agrobacterium sp. H13-3] Length = 985 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 338/612 (55%), Positives = 419/612 (68%), Gaps = 8/612 (1%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII------ 139 ++ + +E ++ T +EA +++ + + ++ + ++ Sbjct: 179 KKKVAEEEAVSDTTAEASSEEDGSTGGEMAAMVDTDTISEEVEGLRRGNDDDDDDDDDDH 238 Query: 140 -SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TT Sbjct: 239 HEKEVIESVGAEDAMEEVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTT 298 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSLAGRYSVLMPNT++G ISRKIT P DRK LKEIAR LEVP GMGVILRTAGA+RT+ Sbjct: 299 YLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTR 358 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 +EIKRDFEYLMRLW+NVR L LNS AP LVYEEG+LIKR+IRDLY KDISEIIVSGE+GY Sbjct: 359 VEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGY 418 Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378 REAKDFMK+LMPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEA Sbjct: 419 REAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEA 478 Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 LV+IDVNSGRSTREH IE+TAL TNLEAAEE+ARQLRLRDLAGL+V+DFIDMEEK+NNRS Sbjct: 479 LVAIDVNSGRSTREHSIEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRS 538 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 VEKKLK+ LK DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC +C G G++RS+SS Sbjct: 539 VEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESS 598 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 +AL +LR VEEYLL+ T HNI V + LYLLN KR TIV+YE RFGV+I + + Sbjct: 599 IALHVLRGVEEYLLRNTTHNITVRCTPETALYLLNHKRGTIVDYEGRFGVAIIIAADAGV 658 Query: 559 ADKLFYIEKGSPVQALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 + F I++G V+ V S D + V +DE I K+++ E Q Sbjct: 659 GAQHFAIDRGEAVENPVKIESLIQMLPSFVEEEDDFVVEVEEDEEEEEIVKAQASEPRQQ 718 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + RKR+RRRRRR + G V + DD+ D +D + Sbjct: 719 QQQGDNGEDGKRKRKRRRRRRGKGGQNDQNGAVDAQAGDDTGADDADDEDGVETDEAADD 778 Query: 678 LLENGAHGFTEN 689 ENG + + Sbjct: 779 ADENGVNEAASS 790 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 88/210 (41%), Positives = 113/210 (53%), Gaps = 1/210 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVTIPNDHS 119 YGGNRHGFL F EIHPDYYQIP +DRQALLK + + + D + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDFESADAPEPGAPAVDLSQ 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 ++ ET + ++ + E + + V + + + Sbjct: 121 ADQPDVGIVAVSETTDAVVVDETVAAAAAEEVSEDVTAVAVEAVAEEAPKKRTRRPRAKK 180 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + + A+ S G + + Sbjct: 181 KVAEEEAVSDTTAEASSEEDGSTGGEMAAM 210 >gi|221201328|ref|ZP_03574367.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M] gi|221208808|ref|ZP_03581806.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans CGD2] gi|221171264|gb|EEE03713.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans CGD2] gi|221178596|gb|EEE11004.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M] Length = 1053 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 191/469 (40%), Positives = 281/469 (59%), Gaps = 3/469 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 83 DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 ++ L+E L++P GM +I RTAG R+ E++ D YL++LW + + + Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201 Query: 284 --APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP V++Y D Sbjct: 202 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 261 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA + Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK DRARVQ+G IS Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 +V +LLN+KR I + E+RF V I ++ L + +E+ A ++ Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 ++ + + E + A PK E+ S R Sbjct: 502 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSAAPQRP 550 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|254563006|ref|YP_003070101.1| ribonuclease E or G [Methylobacterium extorquens DM4] gi|254270284|emb|CAX26280.1| putative ribonuclease E or G [Methylobacterium extorquens DM4] Length = 1053 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 290/547 (53%), Positives = 372/547 (68%), Gaps = 1/547 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 355 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 414 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKE+ L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL Sbjct: 415 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 474 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE YREAKDFM++LMP +++V+ Y Sbjct: 475 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 534 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 DP PIF R G+E QLD++ T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 535 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 594 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNLEAAEE+ARQ+RLRDLAGL+V+DFIDMEEK+NNR+VEK+L E+LK DRAR+QVG I Sbjct: 595 LKTNLEAAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRI 654 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQRIR+ VLES++ C +C G+G++R+ SSVAL ILRS+EE LL+ +HN+ Sbjct: 655 SPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNV 714 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTG 578 ++ T ++ LY+LNQKRA + + E RF V+I + L A F +E+G P Sbjct: 715 VLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPV 774 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 V + + +P Y+ E+ +E + E + RRRR Sbjct: 775 TGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRR 834 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R + + DS D + ++ + S P + Sbjct: 835 RRRRRGGRTAGEGEARARDEDGTDSEDGAEDGAEEGDDAPDSEPEAAEAALGAASEPDEA 894 Query: 699 TPEMESS 705 + +++ Sbjct: 895 ASDADAN 901 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 67/142 (47%), Positives = 89/142 (62%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y Sbjct: 3 NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F EIHPDYYQIP +DR AL++ + + + + Sbjct: 63 GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122 Query: 122 EVAPIANFSQETEEESIISANN 143 + + + E S + + Sbjct: 123 RGSRPDDTVKSQEAASDAGSED 144 >gi|107022187|ref|YP_620514.1| ribonuclease [Burkholderia cenocepacia AU 1054] gi|116689133|ref|YP_834756.1| ribonuclease [Burkholderia cenocepacia HI2424] gi|105892376|gb|ABF75541.1| RNAse E [Burkholderia cenocepacia AU 1054] gi|116647222|gb|ABK07863.1| RNAse E [Burkholderia cenocepacia HI2424] Length = 1059 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 199/539 (36%), Positives = 298/539 (55%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + NS P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSAAPQR 549 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|85715457|ref|ZP_01046438.1| ribonuclease E and G [Nitrobacter sp. Nb-311A] gi|85697652|gb|EAQ35528.1| ribonuclease E and G [Nitrobacter sp. Nb-311A] Length = 1063 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 293/581 (50%), Positives = 380/581 (65%), Gaps = 5/581 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P +D A + + ++ H + H E E + Sbjct: 291 PLADDGARNEHTISTDEAPATHGEEHDHENADHAGGHPHEVELHGDGVRVEDDSIDDDEE 350 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 V S D + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLS Sbjct: 351 EEQVESVGGDDALEEVPERAYRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLS 410 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY+VLMPNT++G ISRKIT+ DR LKE+ + L+VP GMGVILRTAGA+RTK EI Sbjct: 411 LAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKSEI 470 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRDFEYL+R+W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY EA Sbjct: 471 KRDFEYLIRMWETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYSKEIDEIQVAGEAGYHEA 530 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +DFMK+LMPS R V+QY D P+F R G+E QLD++ V L S GY++INQTEALVS Sbjct: 531 RDFMKMLMPSNVRTVKQYRDCQPLFSRMGVESQLDAMFLPTVQLRSGGYIVINQTEALVS 590 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSGRSTREH I+DTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK++NR+VE+ Sbjct: 591 IDVNSGRSTREHHIKDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRSNRAVER 650 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 KL E L+ DRAR+QVG IS+FGLLEMSRQRIR+S+LES+T+ C +C G G++RS SVAL Sbjct: 651 KLSECLRHDRARIQVGRISHFGLLEMSRQRIRASMLESSTEPCPHCGGTGHVRSVPSVAL 710 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA-D 560 +LRS+EE L++ HN+IV T +V LY+LNQKR + E F V ++VV L Sbjct: 711 QLLRSLEEVLIKGATHNLIVRTRINVALYVLNQKRGHLRALEHSFKVGLSVVADPSLEGQ 770 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQ--APSYDKNIECVW--QDEALLPIPKSESLEDIQ 616 + F I++G + L + + P ++ E EA + +E+ D + Sbjct: 771 QSFVIDRGEQIHTLEAAKALLAAQLATYPPQAEEAQEDEQPLDVEAEVEADDAETRADER 830 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +E ++RR RR R A D+ V S+Q Sbjct: 831 AGGETEGEGRKRKRRRSRRERSSEANDNQPPQTVDGPDSVQ 871 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 106/176 (60%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA+H EETRVVV+R NRVEE DFES +KQ++GNIYLAKVTRVEPSLQAAF++Y Sbjct: 21 PNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 80 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E ++D + + + Sbjct: 81 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEDRPNRRRSRHRNSRRR 140 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177 + + + + ++ + S+ + +D + Q+ Sbjct: 141 DHGERVQSAVVEDGDREVAGIDTTQSDPPPDDSATDDDHLSPYHEAQEAQDHDHPN 196 >gi|283478784|emb|CAY74700.1| ribonuclease, Rne/Rng family protein [Erwinia pyrifoliae DSM 12163] Length = 1287 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 200/663 (30%), Positives = 312/663 (47%), Gaps = 39/663 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 371 RARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE----------------ALLPIPKSESLE 613 + + + +A + E + + L +E Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPALQEAVAEPAA 550 Query: 614 DIQDNIVSEESTGVIR---------------KRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 ++ + + + P + A + +N Sbjct: 551 PKAAVKTPAPASAQPGLVSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAEASAPRGERRN 610 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + ++ E + S E +N + + + Sbjct: 611 HRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEAREGREDRRNN 670 Query: 719 WKR 721 +R Sbjct: 671 QRR 673 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 3/149 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G + + + D++ E D + +S + + + E+ Sbjct: 605 RGERRNHRRQNNRRDRNGDRNERNDRSGER--NDRSAERNERSAAQSERAPRERNNEARE 662 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR +RR TD +V D + N E + Sbjct: 663 GREDRRNNQRRNPQQTDARSERMVPDEFERSETTQPRQPRQDRQRRRSGQNQEEKRSLVQ 722 Query: 687 TEN-YDVSIPPVSTPEMESSNSSSDPIVK 714 E + + V PE+ + P K Sbjct: 723 EEKIPEPVVENVPAPEVLEESVQVMPRRK 751 >gi|259908804|ref|YP_002649160.1| ribonuclease E [Erwinia pyrifoliae Ep1/96] gi|224964426|emb|CAX55935.1| Ribonuclease E [Erwinia pyrifoliae Ep1/96] Length = 1287 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 200/663 (30%), Positives = 312/663 (47%), Gaps = 39/663 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 371 RARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE----------------ALLPIPKSESLE 613 + + + +A + E + + L +E Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPALQEAVAEPAA 550 Query: 614 DIQDNIVSEESTGVIR---------------KRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 ++ + + + P + A + +N Sbjct: 551 PKAAVKTPAPASAQPGLVSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAEASAPRGERRN 610 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + ++ E + S E +N + + + Sbjct: 611 HRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEAREGREDRRNN 670 Query: 719 WKR 721 +R Sbjct: 671 QRR 673 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 3/149 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G + + + D++ E D + +S + + + E+ Sbjct: 605 RGERRNHRRQNNRRDRNGDRNERNDRSGER--NDRSAERNERSAAQSERAPRERNNEARE 662 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR +RR TD +V D + N E + Sbjct: 663 GREDRRNNQRRNPQQTDARSERMVPDEFERSETTQPRQPRQDRQRRRSGQNQEEKRSLVQ 722 Query: 687 TEN-YDVSIPPVSTPEMESSNSSSDPIVK 714 E + + V PE+ + P K Sbjct: 723 EEKIPEPVVENVPAPEVLEESVQVMPRRK 751 >gi|167911902|ref|ZP_02498993.1| ribonuclease E [Burkholderia pseudomallei 112] Length = 555 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|85059030|ref|YP_454732.1| ribonuclease E [Sodalis glossinidius str. 'morsitans'] gi|84779550|dbj|BAE74327.1| ribonuclease E [Sodalis glossinidius str. 'morsitans'] Length = 1187 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 201/645 (31%), Positives = 312/645 (48%), Gaps = 24/645 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPPQYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P MG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDSMGLIVRTAGVGKSADALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMP 330 W +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WQAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIASLGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFTSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE L+ES+++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENCLRESVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLE+SRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLELSRQRLSPSLGESSHHVCPRCGGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVQAIIVPNDQMQTPHYAVLRVR 490 Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALL-----PIPKSESLEDIQDNIV 620 + + + ++ PS + + ++ L P P S + + Sbjct: 491 KGEEAPTLSYLLPQLHEAEMTQPSEEPASDRKRPEQPALAAFVMPDPPLVSEKPATVDAS 550 Query: 621 SEESTGVIRKRRRRRRRRRPATDHH-------DAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 S + + R + + + V+ ++ P Sbjct: 551 SVPAAPAVSAASAGASRGLFGRLVDGFKSLLGTPAPQQETDTAKAVVVEAPAEAETPRRQ 610 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + G + + + + DP K+++ Sbjct: 611 ERQDRRGQRRQGGRRDRNGEPVRAGQENRQLRDGRDDPRRKRSQT 655 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|78065695|ref|YP_368464.1| ribonuclease E [Burkholderia sp. 383] gi|77966440|gb|ABB07820.1| RNAse E [Burkholderia sp. 383] Length = 1053 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 206/667 (30%), Positives = 317/667 (47%), Gaps = 47/667 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPERPAPSPAPQRP 550 Query: 631 --------------------------------------RRRRRRRRRPATDHHDAGVVSD 652 + + RPA Sbjct: 551 VEPVAAPTPVAPASGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQAARPARGERTEKSEQR 610 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMESSNSSSD 710 + + + + + G E +V P + E Sbjct: 611 GERGGDRNRNRRGGAQQAQGGRDQAVAGRGQPQRQEREGKEVREPREAREPREGREPRES 670 Query: 711 PIVKKTR 717 ++ R Sbjct: 671 REPREPR 677 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|13470490|ref|NP_102059.1| ribonuclease E [Mesorhizobium loti MAFF303099] gi|14021232|dbj|BAB47845.1| ribonuclease E [Mesorhizobium loti MAFF303099] Length = 984 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 295/549 (53%), Positives = 374/549 (68%), Gaps = 4/549 (0%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE----TEEESIIS 140 D + +E + GDV E+ ++ + E +S Sbjct: 189 DEGSAEQEETETREGGPTSIAAAVEGDVISEPVSHTEQTTEASSSDNDRGMLEEVQSSHP 248 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 +++V S + + K +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYL Sbjct: 249 DDHEVESVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYL 308 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGRYSVLMPNT++G ISRKIT+ VDRK LKE+ LEVP GMGVILRTAG SRTK E Sbjct: 309 SLAGRYSVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTAGESRTKAE 368 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 IKRD+EYLMRLW+NVR L L S AP LVYEEG+LIKR++RDLY KDI EI+VSGE+GYRE Sbjct: 369 IKRDYEYLMRLWENVRSLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGEEGYRE 428 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 AKDFM++LMPS+A++V+ + D PIF R+GIE QLD + Q +VTL S GY+IINQTEALV Sbjct: 429 AKDFMRMLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYIIINQTEALV 488 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVNSGRST+EH IEDTAL TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE +NNRSVE Sbjct: 489 AIDVNSGRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRSVE 548 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 K+LK+ LK DRAR+QVG IS+FGL+EMSRQRIR+SVLEST K C +C G G++RS SSVA Sbjct: 549 KRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVA 608 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 L ++R++EE+LL+ + +I V T + LY+LN KR T+VE E+RFG++I + + Sbjct: 609 LMVVRAIEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITIEADDTVGA 668 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + + I +G+ + + + E +E + ++E Sbjct: 669 QHYAIFRGALAEKPEGFVEARSLPAYVEPEEPEDEIAVVEEDDEVVVQAEQPRQQPQQHQ 728 Query: 621 SEESTGVIR 629 G Sbjct: 729 QPRPAGSED 737 Score = 190 bits (481), Expect = 9e-46, Method: Composition-based stats. Identities = 79/152 (51%), Positives = 89/152 (58%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDASH EETRVVV+R NR+EE DFES+ KKQ+KGNIYLA+VTRVEPSLQAAFV+ Sbjct: 1 MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ D E D Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEEDEDGDGDDRQSRDRGRRGR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + D Sbjct: 121 RRGGKSRERGEHKRDTGEAGEGAGEPGEGGDN 152 >gi|295677200|ref|YP_003605724.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002] gi|295437043|gb|ADG16213.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002] Length = 1066 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 205/606 (33%), Positives = 312/606 (51%), Gaps = 14/606 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ +K Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGTAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KRA I + E+RF V++ ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A PK E+ S V Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEKPAPSAPVRP- 549 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 PA + ++N+ + T TE Sbjct: 550 ------AATPAPVAVTPASGGFIGWLKNLFGMQPAAPAPAAPATTDKQARPQRGERTERG 603 Query: 691 DVSIPP 696 + + Sbjct: 604 ERTGER 609 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGN 110 >gi|260773155|ref|ZP_05882071.1| ribonuclease E [Vibrio metschnikovii CIP 69.14] gi|260612294|gb|EEX37497.1| ribonuclease E [Vibrio metschnikovii CIP 69.14] Length = 1044 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 202/632 (31%), Positives = 316/632 (50%), Gaps = 13/632 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV++ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EISRDYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LK L +P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTD-LKTALSTLVLPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLIRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FASRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTVQVLAVVPVSIASYLLNEKRRSINHIERNQEVKITIVPNSDMETPHFEVLRIREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + E ++ I E + S + Sbjct: 488 EEQEILSYL-----IPNKLEAMREAEGKELTDAEIKPKRIEEPVLKGFASPAQNAPAPRV 542 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + P T+ V ++ + + + EP + + A E + Sbjct: 543 QVETAPAEPVTEKQPTLVSRFFKALSTLFSSTSEEVKEP--VVPAQIETKPAQPRRERNE 600 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P ++ + K++ RK Sbjct: 601 RRRNPRDKHNKRKADDVVEKADKESATPAPRK 632 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI DY YQ S ++ L + + + Sbjct: 61 RHGFLPLKEISRDYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 106 >gi|30249428|ref|NP_841498.1| ribonuclease G and E [Nitrosomonas europaea ATCC 19718] gi|30138791|emb|CAD85368.1| Ribonucleases G and E [Nitrosomonas europaea ATCC 19718] Length = 853 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 213/642 (33%), Positives = 317/642 (49%), Gaps = 24/642 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++ + D E + + ++ LE + E + + Sbjct: 11 PEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLE----------PSLEAAFVDY 60 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + + + ++++ Q L+VQ+ K+ERGNKGAA+TTY+S Sbjct: 61 GAGRHGFLPYKEIAPTCFDRNTDWSGHRVADLLREGQELIVQVDKDERGNKGAALTTYIS 120 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN +G ISR+++ + L+E+ L+VP GM +I RTAG R + E+ Sbjct: 121 LAGRYLVLMPNNPQGGGISRRVSAEERAE-LREVINNLQVPEGMSIIARTAGIGRNEEEL 179 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D YL++LW + E A N L+Y+E +L+ RAIRD + +I EI++ + Y +A Sbjct: 180 QWDLNYLVQLWRAIEEAASNEKGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQA 239 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 FM +MP+ ++ Y+D P+F R IE Q+++ + +VTLPS G ++I+ TEALVS Sbjct: 240 YQFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVS 299 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNS R+ R IE TAL TNLEAA+EIARQLRLRDL GL+VVDFIDME +N R VE Sbjct: 300 IDVNSARAIRGSDIETTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVES 359 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L ++L+ DRARVQ+G IS FGLLE+SRQR+R S+ E C C G G+IR S AL Sbjct: 360 SLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSAL 419 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR ++E ++ + V DV +LLN+KR+ I EAR V I ++ I + Sbjct: 420 HILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETP 479 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV-WQDEALLPIPKSESLEDIQDNIV 620 + I + + S + + + + A P ++ Q V Sbjct: 480 NYTITRLRHEDIKSTELPPSYEMVEKTSEEVTLPSISQETRATRPKAAVTGIKPEQPAPV 539 Query: 621 SEESTGV------------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 EE R + A + + S + S Sbjct: 540 PEEKPREQLSFLDKFFSLFRPAGSNRTETDQAAEESQTKPSRGERSRNRRDRGRSKRTKT 599 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 N +L E G ++ V PV+ ++ Sbjct: 600 STQVTANGSLQEAGHSSLLDHPVVVEHPVTDRATDNDRQHRK 641 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 39/74 (52%), Positives = 53/74 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ K+Q K NIY A VTR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHP 76 RHGFLP+ EI P Sbjct: 62 AGRHGFLPYKEIAP 75 >gi|221214112|ref|ZP_03587085.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1] gi|221166289|gb|EED98762.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1] Length = 1056 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 191/469 (40%), Positives = 281/469 (59%), Gaps = 3/469 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 83 DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 ++ L+E L++P GM +I RTAG R+ E++ D YL++LW + + + Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201 Query: 284 --APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP V++Y D Sbjct: 202 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 261 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA + Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK DRARVQ+G IS Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 +V +LLN+KR I + E+RF V I ++ L + +E+ A ++ Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 ++ + + E + A PK E+ S R Sbjct: 502 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSAAPQRP 550 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|311104734|ref|YP_003977587.1| ribonuclease E [Achromobacter xylosoxidans A8] gi|310759423|gb|ADP14872.1| ribonuclease E [Achromobacter xylosoxidans A8] Length = 1027 Score = 319 bits (817), Expect = 9e-85, Method: Composition-based stats. Identities = 195/601 (32%), Positives = 299/601 (49%), Gaps = 45/601 (7%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR++ ++ L++ L++P GM +I RTAG R E++ D YL++L Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDLPQGMSIIARTAGIGRNVEELQWDLSYLLQL 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A ++ AP L+Y E +L+ RAIRD + +I EI++ ++ +A FM ++MP Sbjct: 190 WTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y D P+F R IE Q+++ + VTLPS G ++I+ TEALVS+DVNS RSTR Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSVDVNSARSTR 309 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL+TN EAA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L DR Sbjct: 310 GADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGL+E+SRQR+R ++ E + C C G G IR S AL +LR ++E Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV YLLN+KRA I + EAR V++ ++ L +IE+ Sbjct: 430 MKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPHHHIERLRHD 489 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP------------------------ 607 + +AP+ D + + P Sbjct: 490 DPRLEELKTSFELVEAPATDAPWQPREHEIKSRPEALVKGITPSQPAPVSTPAPAAAAPA 549 Query: 608 --------------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 SE+ + + + R Sbjct: 550 PAAAGGLGGLFKRLFGWLGGSSEAAKPAPAVQEDSAKRASSGRGKGRSGHDGQERRGERH 609 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 G + + + + N G + + +++ + Sbjct: 610 GSDRNRNRRGESRAEGAEGSEGGRHHVRGNRRPEGERQERGDRHNRNEARGERDTQATQA 669 Query: 708 S 708 + Sbjct: 670 A 670 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110 >gi|325927797|ref|ZP_08189022.1| RNAse E [Xanthomonas perforans 91-118] gi|325541787|gb|EGD13304.1| RNAse E [Xanthomonas perforans 91-118] Length = 1222 Score = 319 bits (817), Expect = 9e-85, Method: Composition-based stats. Identities = 210/608 (34%), Positives = 317/608 (52%), Gaps = 9/608 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 7 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD DI EI+V + Y +A++FMK +MP Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMKQVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L+ +LK D Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 485 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + +G + +A L IP + ++ I+ + + Sbjct: 486 NELGEESGKPSYQRGTPRKLPVHAL----TKAQLNIPAAPAVTSIKPSQPAPVREEAPAP 541 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P + G + E Sbjct: 542 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRGERG 601 Query: 691 DVSIPPVS 698 + Sbjct: 602 ERGGQRRD 609 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 62/107 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 61 RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107 >gi|152969637|ref|YP_001334746.1| ribonuclease E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954486|gb|ABR76516.1| RNase E, membrane attachment, mRNA turnover, maturation 5S RNA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1074 Score = 319 bits (817), Expect = 9e-85, Method: Composition-based stats. Identities = 200/605 (33%), Positives = 308/605 (50%), Gaps = 14/605 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KRA + E+R G V + +V E+ + + + Sbjct: 428 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + E + P + + D + EE Sbjct: 488 KGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPAPMLEEPAAAP 547 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 A G++S S I S +P+++ E E Sbjct: 548 VAAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGAEEAKPAEVEIEKKAEEKPERQQE 602 Query: 689 NYDVS 693 Sbjct: 603 RRKPR 607 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|21231532|ref|NP_637449.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768412|ref|YP_243174.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004] gi|21113213|gb|AAM41373.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573744|gb|AAY49154.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004] Length = 1187 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 212/637 (33%), Positives = 320/637 (50%), Gaps = 10/637 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LK+ L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD DI EI+V + Y +A++FM+ +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMQQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYD-KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + ++G + + + P S + Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPVAPAVTSIKPSQPAPVREEAPAAAPAP 548 Query: 630 KRRRRRRRRRPATDHHD--AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 P T + V + + S +D N + G G Sbjct: 549 APVVALPLPAPVTGVVGWLKRIFGGVDAPAAAPEASQQQRPRQNDAARGNRNDRGERGGQ 608 Query: 688 EN--YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 D N + + K+ R +R+ Sbjct: 609 RRDGRDARNGNGGQHRGNGGNGNGNGANKERRDERRQ 645 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGN 110 >gi|238894119|ref|YP_002918853.1| ribonuclease E [Klebsiella pneumoniae NTUH-K2044] gi|238546435|dbj|BAH62786.1| RNase E [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1077 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 197/605 (32%), Positives = 303/605 (50%), Gaps = 13/605 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KRA + E+R G V + +V E+ + + + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + E + P + + D + EE Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPAPMLEEPAAAP 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 A G++S S I + E Sbjct: 551 VAAAA----PVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVQVEKKAEEKPERQQER 606 Query: 689 NYDVS 693 + Sbjct: 607 RKPRA 611 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|259416629|ref|ZP_05740549.1| ribonuclease E [Silicibacter sp. TrichCH4B] gi|259348068|gb|EEW59845.1| ribonuclease E [Silicibacter sp. TrichCH4B] Length = 952 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 268/624 (42%), Positives = 365/624 (58%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 A + D + ++ + + ++ + S +D Sbjct: 206 EAEGVIADAAEETEEASTDTSSEDEAGDSDDENAEATEAKDSSSDAADKDDSIESVADDD 265 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K ++Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPN Sbjct: 266 DQEDIRPPRKPRPKRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPN 325 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 T++G ISRKITN VDRK LKEIA L+VP G G+I+RTAGA RTK EIKRD+EYL R+W Sbjct: 326 TARGGGISRKITNAVDRKKLKEIAAELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRMW 385 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + +REL L S+AP +YEEG+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+ Sbjct: 386 EQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSH 445 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A+ V+ Y D P+F R +E L + V L S GY++I TEALV+IDVNSGR+T+E Sbjct: 446 AKNVKNYHDQLPLFARYQVESYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKE 505 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+E+KNN +VEKKLK+ LK DRA Sbjct: 506 ASIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLKDKLKTDRA 565 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+QVG IS FGLLEMSRQR+R ++E+TT C +C G G IRS S+ALSILR +EE Sbjct: 566 RIQVGRISGFGLLEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGT 625 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + ++V D+ YL+NQKR I + EAR+G+S+ + + L F +EK Sbjct: 626 RRRSREVLVKCPVDIANYLMNQKREHIAQIEARYGLSVRIEGDVTLVSPDFSLEKFKTAS 685 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + A D+ E + P + +E + S+ R+RR Sbjct: 686 RAIPVVTAPVVSVDASIMDQIDAIEEVAEEVEEAPAAAPVEAEETEGESKPKRKRRRRRR 745 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 ++ D+ D +S ++ ++ ++ + +E E Sbjct: 746 KKSGNGENGQDNGDNSAAESETSDESKDAETGGEAEVKAEPSADGAVEVEGETEAEPKKK 805 Query: 693 SIPPVSTPEMESSNSSSDPIVKKT 716 + +T Sbjct: 806 KTRTRTRSRSRKKVEPEAEQTTET 829 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 78/156 (50%), Positives = 98/156 (62%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A ++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDEDPKPKRRTRSRS 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156 + A A + E + + ++N ++ Sbjct: 121 KTRAEKAKTADAVETKEVAASNGEISGMETIDLSDD 156 >gi|254469358|ref|ZP_05082763.1| ribonuclease E [Pseudovibrio sp. JE062] gi|211961193|gb|EEA96388.1| ribonuclease E [Pseudovibrio sp. JE062] Length = 1022 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 282/527 (53%), Positives = 367/527 (69%) Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + D ED + P++ + Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLS Sbjct: 244 DADEQDGSEDEAQEEVIERPRRLRDNYKIQEVIKRRQLLLVQVVKEERGNKGAALTTYLS 303 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRYSVLMPNT +G ISRKIT P DRK LK++A L+VP GMGVILRTAGASRTK EI Sbjct: 304 LAGRYSVLMPNTDRGGGISRKITKPTDRKRLKQVAGDLDVPNGMGVILRTAGASRTKAEI 363 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRDFEYL+RLW+NVREL L+S AP LVYEEG+LIKR+IRDLY KDI +++V+GE+GYREA Sbjct: 364 KRDFEYLLRLWENVRELTLDSAAPTLVYEEGSLIKRSIRDLYNKDIDQVLVAGEEGYREA 423 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 KDFM++LMPS+++ V+ Y D PIF R G+E QLD++ +VTL S GY++INQTEALV+ Sbjct: 424 KDFMRMLMPSHSKNVQPYRDATPIFTRFGVEAQLDAMFSPQVTLKSGGYIVINQTEALVA 483 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG++TRE IEDTA TNLEAAEEIARQLRLRDLAGL+V+DFIDMEE +NNR+VE+ Sbjct: 484 IDVNSGKATREQNIEDTAQATNLEAAEEIARQLRLRDLAGLVVIDFIDMEENRNNRAVER 543 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +LKE LK DRAR+QVG IS+FGLLEMSRQRIR+ VLES++ VC +C G+G +RS SVAL Sbjct: 544 RLKECLKSDRARIQVGRISHFGLLEMSRQRIRTGVLESSSVVCPHCHGSGIVRSVESVAL 603 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILRS+E+ LL+ ++HN+ + T ++V +Y+LNQKR +++ E RFG+ I++ + ++ Sbjct: 604 HILRSLEDQLLRGSSHNLNLRTPNEVAMYILNQKRHHLMDLERRFGLEISIFGDDSVTEQ 663 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F +E+G T + + + +EA + S ED D Sbjct: 664 HFTLERGELATPSERTQPLPATVQPDTIFPIEEDEDVIEEAADEQKQEASDEDGNDRRRR 723 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + ++ D + D + + D+ Sbjct: 724 RRRRRRRGGDKAEAEQKLDDADLSEEQPSDDEEAAEEKSADAEASDA 770 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 68/86 (79%), Positives = 77/86 (89%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRV V+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDATHPEETRVTVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDR 86 YGGNRHGFL F EIHPDYYQ+P DR Sbjct: 61 YGGNRHGFLAFSEIHPDYYQLPKEDR 86 >gi|213609302|ref|ZP_03369128.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 547 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 189/536 (35%), Positives = 290/536 (54%), Gaps = 9/536 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + +A + E + P + ++ D+ E Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEP 546 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|260427654|ref|ZP_05781633.1| ribonuclease E [Citreicella sp. SE45] gi|260422146|gb|EEX15397.1| ribonuclease E [Citreicella sp. SE45] Length = 1022 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 263/573 (45%), Positives = 346/573 (60%) Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 S ++ + S +D K R+Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTY Sbjct: 245 SGDDSIESVADDDTEEDIRPKRKPRPRKYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY 304 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 LSLAGRY VLMPNT++G ISRKITN DR LK+IA ++VP G G+I+RTAGA RTK Sbjct: 305 LSLAGRYCVLMPNTARGGGISRKITNTTDRSKLKQIAAEIDVPKGAGLIIRTAGAKRTKT 364 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 EIKRD+EYL RLW+ +R L L S+AP +YEEG+LIKR+IRDLY ++I E+ V G++GYR Sbjct: 365 EIKRDYEYLQRLWEQIRALTLQSIAPAKIYEEGDLIKRSIRDLYNREIDEVHVEGDRGYR 424 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 AKDFMK++MPS+A+ V+ Y DP P+F R +E L S+ V L S GY++I TEAL Sbjct: 425 IAKDFMKMIMPSHAKNVKHYADPMPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEAL 484 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSGR+T+E IE+TAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDMEE+KNN +V Sbjct: 485 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 544 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EKKLK+ LK DRAR+QVG IS FGLLEMSRQR+R ++E+TT+ C C G G IRS ++ Sbjct: 545 EKKLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPACHGTGLIRSDDNM 604 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 AL+ILR +EE + + ++V + YL+NQKR + EAR+G+++ + L Sbjct: 605 ALNILRQIEEEGTRRRSREVLVKVPVGIANYLMNQKREHVAMIEARYGMAVRIEGDTHLV 664 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 F +EK V D+ E + E E Sbjct: 665 SPDFSMEKFKTATRNVPEVVAPVVSVDTTLMDQVDEDALEAEVEEVEEVEEETTVETPTQ 724 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ R+RRRRR R + + + N D+ D + T Sbjct: 725 QDDDDKPKKRRRRRRRSRSKSRENDENGESDGSDEGSDNGDADASDEVTAEAPATPVAAE 784 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + + P Sbjct: 785 AAAEVVTEAPEEAPAAETPEAAPAEEEAPAKPK 817 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 96/158 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLI +H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 6 MAKKMLIPPTHAEETRVVVVEGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 65 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F E+HPDYYQIP +DRQAL++E +++ D+ Sbjct: 66 YGGNRHGFLAFSEVHPDYYQIPVADRQALMEEEAALAAEADDEDDEKEKSRARSARSRRS 125 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 +++++ + +++ G Sbjct: 126 RSRTRSKAEKTRSDDKTTSADVSEIKGMETIDLGDEEH 163 >gi|167763388|ref|ZP_02435515.1| hypothetical protein BACSTE_01762 [Bacteroides stercoris ATCC 43183] gi|167698682|gb|EDS15261.1| hypothetical protein BACSTE_01762 [Bacteroides stercoris ATCC 43183] Length = 524 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 264/580 (45%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + +SL Sbjct: 60 VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ LS AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W+ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAIVKVQKATKFPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E + E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 V+ S Y+II TEAL +DVNSG + ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRIKNANGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H + Y+ + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGVLSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYVFYDPQGEEIDMKEE 520 >gi|167720583|ref|ZP_02403819.1| ribonuclease E [Burkholderia pseudomallei DM98] Length = 540 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 193/531 (36%), Positives = 295/531 (55%), Gaps = 7/531 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 A ++ ++ + + E + A P+ E+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERP 538 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|188991779|ref|YP_001903789.1| ribonuclease E [Xanthomonas campestris pv. campestris str. B100] gi|167733539|emb|CAP51743.1| ribonuclease E [Xanthomonas campestris pv. campestris] Length = 1194 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 217/641 (33%), Positives = 326/641 (50%), Gaps = 15/641 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LK+ L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD DI EI+V + Y +A++FM+ +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMQQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++G + + P S++ Q V EE+ + Sbjct: 489 NELGEDSGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAA 547 Query: 631 RRRRRRRRRPATDHHDAGVVSD-------VSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 GVV V + + S +D N + G Sbjct: 548 APATAPVVALPLPAPVTGVVGWLKRIFGGVDAPAAAPEASQQQRPRQNDAARGNRNDRGE 607 Query: 684 HGFTEN--YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 G D N + + K+ R +R+ Sbjct: 608 RGGQRRDGRDARNGNGGQHRGNGGNGNGNGANKERRDERRQ 648 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGN 110 >gi|284799462|ref|ZP_05984049.2| ribonuclease E [Neisseria subflava NJ9703] gi|284797933|gb|EFC53280.1| ribonuclease E [Neisseria subflava NJ9703] Length = 989 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 207/630 (32%), Positives = 315/630 (50%), Gaps = 10/630 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 34 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 93 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 94 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 153 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 154 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 212 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MPS Sbjct: 213 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 272 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 273 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 332 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 333 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 392 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 393 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 452 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 453 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 512 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + ++ + E + + ++++ Sbjct: 513 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWW 572 Query: 628 IRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + +R A ++ + N +S N +G+ Sbjct: 573 DSFKAWLKRIFGGEPAPVAVAQEPAEKRTTNNRSQNSNRRSNSRRQNPRRNNKNDGSKVE 632 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + S E SN S + K T Sbjct: 633 VREVNA-EAVDSKFEENKSNESRNDERKDT 661 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 26 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 85 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 86 TDRHGFLPFKEVSRSYFR 103 >gi|269139454|ref|YP_003296155.1| ribonuclease, Rne/Rng family [Edwardsiella tarda EIB202] gi|267985115|gb|ACY84944.1| ribonuclease, Rne/Rng family [Edwardsiella tarda EIB202] Length = 1069 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 203/643 (31%), Positives = 311/643 (48%), Gaps = 19/643 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPSNYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK + L P Sbjct: 188 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S+ALSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R V + VV ++ + + + Sbjct: 428 ALKENTREVHAIVPVPVASYLLNEKRDAVSAIEKRQPDVRVIVVPNEQMQTPHYAVMRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + +K+ +A + + + P + SL+ I + + V Sbjct: 488 KGEETHTLSYKLPQLHEAEACGEEEVPAERKRPEQPALAAFSLDVAAPPIDAAQDKPVAV 547 Query: 630 KRRRRRRRRRPATDHHD----------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 R +P D G+ + + V ++ E + + Sbjct: 548 D-VAPTERPQPVADARPGLFGRLVASLKGIFAGDDAPAPVQEEKPAASAERPRDESRSSQ 606 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + E P + R Sbjct: 607 ERRGRRQNPRRERGERGDRPERGERPERGERPERGERPERGER 649 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|304321510|ref|YP_003855153.1| ribonuclease E [Parvularcula bermudensis HTCC2503] gi|303300412|gb|ADM10011.1| ribonuclease E [Parvularcula bermudensis HTCC2503] Length = 1038 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 267/658 (40%), Positives = 368/658 (55%), Gaps = 8/658 (1%) Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 L E+ D + A + +A + A+ + S +E + Sbjct: 290 LADSEVLSD-----EALADAEKSDPPLADDGNAPRAEKTDQPVADGESAPSDDEESAAEE 344 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 + + + A+ + + R Y IQEVIK RQ++LVQ+VKEE Sbjct: 345 PKGKANDTAPSPASEQAQIAALQKRYDEARRERDRLLRNYRIQEVIKRRQVMLVQVVKEE 404 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 RGNKGAA+TT+LSLAGRY VLMPN ++G +SRKI+N DR+ L++ L VPAG G+I Sbjct: 405 RGNKGAALTTFLSLAGRYGVLMPNNARGGGVSRKISNQSDRRRLRKAMAELNVPAGQGLI 464 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 +RTAGA RTK EIKRD++YL RLWD +R L SVAP L+YEE +LIKRAIRDLY KD + Sbjct: 465 IRTAGAKRTKAEIKRDYDYLARLWDTIRSQTLQSVAPCLIYEEASLIKRAIRDLYDKDTA 524 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 EI+V GE GYREAKDFMK+LMPS+A+ V+ Y + P+F G+E QLD ++Q VTL S Sbjct: 525 EILVEGEDGYREAKDFMKMLMPSHAKNVQPYREQEPLFLHYGVERQLDEMYQPVVTLKSG 584 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 GY++I QTEAL+SIDVNSG+ST+E +E TAL+TN EAA E+ARQ RLRDLAGLIVVDFI Sbjct: 585 GYLVIQQTEALISIDVNSGKSTKERNVEATALKTNSEAAVEVARQCRLRDLAGLIVVDFI 644 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488 DM+E +NNR+VEKK KE+LK DRAR+QVG+IS FGLLEMSRQR RS +++ TT+ C C Sbjct: 645 DMDENRNNRTVEKKFKEALKSDRARIQVGSISTFGLLEMSRQRRRSGIVDGTTRTCPTCD 704 Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 GAG +RS AL ILR++EE A ++ DV LY+LNQKR + + EA +G Sbjct: 705 GAGAVRSVEMAALRILRAIEEKAASDKAASVTASAALDVSLYILNQKRDWLNQIEATYGC 764 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIP 607 I V + + + ++ + + S + D + Sbjct: 765 RITVEGDSDKNGDQYELTVSGRLKEEETLRQGSSAAAVDASSLLENDEQQDDGDTPKEAA 824 Query: 608 KSESLEDIQDNIVSEESTGVIRK-RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 S+S + Q + +++ T + ++RRRRR + A + S + Sbjct: 825 ASDSDDPEQKSQKADDETAEGGDGKPKKRRRRRRKRNADSAETKGETESRAPSQPTENET 884 Query: 667 YMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + + + + +++ D +RRK Sbjct: 885 KDEQIEAGAAEPNAGSVKDQSPQQGAAEEQAGTQVDGQTAAKDKDSEAAPKPARRRRK 942 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 91/151 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KM+IDA H EETRV VL + +VE+ DFES +K ++GNIYLA+VTRVEPSLQAAF++ Sbjct: 1 MTKKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIH DYYQIP +DR+ L + + +AD G V I ++ + Sbjct: 61 YGGNRHGFLAFGEIHSDYYQIPVADREVLRAAEALEAELAAKLADFDQAGVVDIEDEGDV 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVED 151 + T S ++ + + Sbjct: 121 VDTQGDLESEDGTSSTSAADDDDGDSGDDGN 151 Score = 53.1 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E +P Q N ++ A + + ++ + D Q ++S Sbjct: 872 ESRAPSQPTENETKDEQIEAGAAEPNAGSVKDQSPQQGAAEEQAGTQVDGQTAAKDKDSE 931 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + RRRR+ +PA + ++ S E +D Sbjct: 932 AAPKPARRRRKPAQPAAETDSGPSDTEKDSPSPQQAAPRAKATETADQEAGQSSPPKTDA 991 Query: 686 FTENYDVSIPPVST-----PEMESSNSSSDPIVKKTRWWKR 721 + S PP + P +S+ P K+ WW+R Sbjct: 992 PADKAQPSEPPRAAETIHAPLEDSAQGEDKPAPKRGGWWQR 1032 >gi|78047979|ref|YP_364154.1| ribonuclease E [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036409|emb|CAJ24100.1| ribonuclease E [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1216 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 214/638 (33%), Positives = 321/638 (50%), Gaps = 11/638 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + +G + + P S++ Q V EE+ + Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAP 547 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPS--DITNHNLLENGAHG 685 GVV + I + + + P D N E G G Sbjct: 548 VAAPAPVVTVPIPAPITGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRSNRGERGERG 607 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + R+ Sbjct: 608 GQRRDGRDARNGGNGGNQQRGNGGNGNGANKERRDERR 645 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|237748408|ref|ZP_04578888.1| ribonuclease E protein [Oxalobacter formigenes OXCC13] gi|229379770|gb|EEO29861.1| ribonuclease E protein [Oxalobacter formigenes OXCC13] Length = 977 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 188/557 (33%), Positives = 292/557 (52%), Gaps = 2/557 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R I++ + Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR++ Sbjct: 85 RSAAIKDAMTEGQEIMVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E LEVPAGM +I RTAG R+ E++ D YL++LW+ + ++ Sbjct: 145 EERQE-LREAMDKLEVPAGMSIIARTAGIGRSTEELQWDLNYLLQLWNAIEGAGSSAPGA 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ RAIRD + DI EI++ ++ Y +A+ FM +MP V++Y D P+ Sbjct: 204 FLIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQARQFMSHVMPDMVNRVKRYRDDVPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ + V+LPS G ++I+ TEALV++DVNS RSTR IE TA TN E Sbjct: 264 FSRFQIEHQIETAYSRVVSLPSGGSIVIDHTEALVAVDVNSARSTRGTDIETTAFNTNCE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQLRLRDL GLIV+DFIDME KN R +E +LKE+L DRARVQ+ I+ FGL+ Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMESAKNRREIENRLKEALHYDRARVQMDKITRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R S+ E + C C G G+IR S AL +LR +EE ++ ++ I V Sbjct: 384 ELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIEEESMKESSAVIHVQIPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH-KVGSD 584 DV +LLN+KR I++ E R V I ++ L + +E+ + Sbjct: 444 DVAAFLLNEKRGEIMKVENRHKVEIVLIPNTHLETPHYKLERIKHDDPRLEEPQVSYKLA 503 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 Q+ + + + +++ + E V +++ + Sbjct: 504 EQSDDDMSFAKRQKEPVKPVQEAMVKNIPEGIPAAPVVERKPVAQEQGFFSKLLGIFGIG 563 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 + + + + + + + Sbjct: 564 KEETPAEPEEKPAKNNARKGRNNDRNRNRNRNRGERDDKARTPVSPATPVAAAPEADETE 623 Query: 705 SNSSSDPIVKKTRWWKR 721 + ++ ++ + R Sbjct: 624 NANAGQKRGRRPKNADR 640 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D ES ++ K NIY A +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIESNSRELHKSNIYKAVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ ++ R A +K++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSLFKDGVDVRSAAIKDAMTEGQEIMVQVEKEERGN 110 >gi|27379416|ref|NP_770945.1| ribonuclease E [Bradyrhizobium japonicum USDA 110] gi|27352567|dbj|BAC49570.1| ribonuclease E [Bradyrhizobium japonicum USDA 110] Length = 1032 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 274/478 (57%), Positives = 355/478 (74%), Gaps = 2/478 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+ Sbjct: 320 EEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 379 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKIT+ DR LKE+ + L+VP GMG+ILRTAGA+RTK EIKRDFEYL+R+W+ Sbjct: 380 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIRMWET 439 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VR+L L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GYREA+DFMK+LMP+ Sbjct: 440 VRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEISVAGESGYREARDFMKMLMPANVS 499 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+QY D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGRSTREH Sbjct: 500 AVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 559 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IEDTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DRAR+ Sbjct: 560 IEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARI 619 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS+FGLLEMSRQRIR+SVLES+T C +C G G++RS SSVAL +LR +EE L++ Sbjct: 620 QVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHVRSVSSVALQLLRGLEEILMKG 679 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIEKGSPVQA 573 HN++V T +DV LY+LN KR + + E F V++ V+ ++ + I++G V Sbjct: 680 ATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTLAVIADPSVSGPQAYLIDRGEQVHT 739 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 L + + + A S +E + DE P +SE + + + E++ G Sbjct: 740 LEAAKALLAAQAAA-SPPPVVEEAYDDEEFDPELESEIESEETEGLTEEQAAGEAAPE 796 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 74/106 (69%), Positives = 89/106 (83%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD 106 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESEN 106 >gi|83719665|ref|YP_442242.1| ribonuclease E [Burkholderia thailandensis E264] gi|257138435|ref|ZP_05586697.1| ribonuclease E [Burkholderia thailandensis E264] gi|83653490|gb|ABC37553.1| ribonuclease E [Burkholderia thailandensis E264] Length = 1068 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 196/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|299133773|ref|ZP_07026967.1| ribonuclease, Rne/Rng family [Afipia sp. 1NLS2] gi|298591609|gb|EFI51810.1| ribonuclease, Rne/Rng family [Afipia sp. 1NLS2] Length = 974 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 297/648 (45%), Positives = 387/648 (59%), Gaps = 13/648 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P D E A D+ E V S E E++ Sbjct: 216 PEGDFAHHDDEHLHDHDHDHASDDEAHDDTYADHEHSESEHVESSVAHSDEDEDDDEAEE 275 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 V S D + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLS Sbjct: 276 EEQVESVGGDDALEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLS 335 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY+VLMPNT++G ISRKIT+ DR LK++ + L+VP GMG+ILRTAGASRTK EI Sbjct: 336 LAGRYAVLMPNTARGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEI 395 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRDFEYL+R+W+ VR+L L S AP LVYEEG+LIKR++RDLY K+I E++VSG+ GY+EA Sbjct: 396 KRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVSGDAGYQEA 455 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +DFMK+LMPS R V+ Y D P+F R G+E QLD++ VTL S GY++INQTEALVS Sbjct: 456 RDFMKMLMPSSVRAVKPYRDTQPLFSRMGVESQLDAMFSPTVTLRSGGYIVINQTEALVS 515 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSGRSTREH IEDTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+ Sbjct: 516 IDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVER 575 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 K+ + L++DRAR+QVG IS+FGLLEMSRQRIR+SVLES+T+ C C G G++RS SSVAL Sbjct: 576 KMSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPTCGGTGHVRSVSSVAL 635 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +LRS+EE L++ HN V T +DV LY+LN KR + + E F V+++V+ + + Sbjct: 636 QLLRSLEEQLMKSGTHNYSVRTRTDVALYVLNHKRGHLRDLEEAFQVTLSVIADTTVNGQ 695 Query: 562 L-FYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKNIECVWQDEALLPIPKSES 611 F IE+G V + + A + E V + +E+ Sbjct: 696 QAFIIERGEQVHTTEAAKALLAARVAAQPVEVEEFDDEDEFFEEDVEAEAENGETADAET 755 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH---DAGVVSDVSSIQNVIDDSFDMYM 668 E + R+ R R R AT D V + S ++ D + Sbjct: 756 TEARGEGDEGPRRRRRRRRGRGRGGEGRDATQASPANDDAVSGEESQVETGEDGEDESDA 815 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 P+ N E + +S + + Sbjct: 816 APARADQDNGERRPRRRGRRGGRRRRGNHDNANGEEAAASGNDTEADS 863 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 72/93 (77%), Positives = 82/93 (88%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFES +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93 YGGNRHGFL F EIHPDYYQIP +DRQAL++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAD 93 >gi|307131543|ref|YP_003883559.1| RNase E [Dickeya dadantii 3937] gi|306529072|gb|ADM99002.1| RNase E [Dickeya dadantii 3937] Length = 1065 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 204/634 (32%), Positives = 310/634 (48%), Gaps = 20/634 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WEAIKKAAEGRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGMETPHYSVLRVR 490 Query: 570 PVQALVNTGH----------KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + + + D Q P + + IP +E+ Sbjct: 491 KGEEKQTLSYMLPQLLDVESQTSPDEQVPERRVPEQPALASFTMSDIPPAETKPAPVVAA 550 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 EE +R R A + S + V S + E +N Sbjct: 551 PKEEKQPASSERGLFGRLVGALKGIFAAPADAGAKSAETVDVASDE--QEQKQERRNNRR 608 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 ++G T + + + + I Sbjct: 609 QSGRRERTRDNREPRERDEQRRNKRTQPQNADIE 642 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|304559349|gb|ADM42013.1| Ribonuclease E [Edwardsiella tarda FL6-60] Length = 1072 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 203/643 (31%), Positives = 311/643 (48%), Gaps = 19/643 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK + L P Sbjct: 191 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S+ALSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R V + VV ++ + + + Sbjct: 431 ALKENTREVHAIVPVPVASYLLNEKRDAVSAIEKRQPDVRVIVVPNEQMQTPHYAVMRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + +K+ +A + + + P + SL+ I + + V Sbjct: 491 KGEETHTLSYKLPQLHEAEACGEEEVPAERKRPEQPALAAFSLDVAAPPIDAAQDKPVAV 550 Query: 630 KRRRRRRRRRPATDHHD----------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 R +P D G+ + + V ++ E + + Sbjct: 551 D-VAPTERPQPVADARPGLFGRLVASLKGIFAGDDAPAPVQEEKPAASAERPRDESRSSQ 609 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + E P + R Sbjct: 610 ERRGRRQNPRRERGERGDRPERGERPERGERPERGERPERGER 652 Score = 137 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|119775124|ref|YP_927864.1| ribonuclease E [Shewanella amazonensis SB2B] gi|119767624|gb|ABM00195.1| RNAse E [Shewanella amazonensis SB2B] Length = 1141 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 212/663 (31%), Positives = 325/663 (49%), Gaps = 38/663 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I E S+ +A D + Sbjct: 37 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 96 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 97 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 156 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVP GMG+I+RTAG + E++ D + L+ Sbjct: 157 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPNGMGLIVRTAGVGKDAAELQWDLKVLL 215 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 R WD ++E + + P L+++E N+I RAIRD +D+ EI++ K + +AK + + Sbjct: 216 RHWDAIKEASESGPGPMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIFEQAKQHIATVR 275 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+QY+ P+F IE Q++S Q EV LPS G ++I+ TEA+ SID+NS R+ Sbjct: 276 PDFVERVKQYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAMTSIDINSARA 335 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++ + Sbjct: 336 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVHQ 395 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 396 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTESLALSILRLMEE 455 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ + DV +LLN+KR I E R V + V+ + + + + Sbjct: 456 EAIKDNTSQVEAIVPVDVAAFLLNEKRKAIRIIEQRHEVEVYVIPDPHMMTPEYKVIRHR 515 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI---------------ECVWQDEALLPIPKSESLED 614 + +K +A Y+ + A P +++ ++ Sbjct: 516 QDDEIEEASYKRVEKPEAKLYEPRKLERAQAPEPVLKGFSAPLESPPAAAPKVEAKPVKA 575 Query: 615 IQDNIV--------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + ++T K+ R R+ T + + + Sbjct: 576 ASEVKPGFFSRLFAAIGSLFGGDNTETEEKKAPARNGRQQNTRGRNRRNDNRRDDGRQ-- 633 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + D + + + + + S+ D K+ R K Sbjct: 634 -EGRSADSRRDDSRREDGDKRRSSDSRRGRNKPEQADDKQLRDKSDKPRDERPKRERAPK 692 Query: 721 RRK 723 R K Sbjct: 693 REK 695 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 95/707 (13%), Positives = 187/707 (26%), Gaps = 41/707 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 29 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 88 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 RHGFLP EI +Y+ P ++ + V + + Sbjct: 89 AERHGFLPLKEIAREYF--PKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTF 146 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 ++ ++ + + E + + I + Sbjct: 147 ISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPNGMGLIVRTAGVGKDAAE 206 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 + + S +G +L+ S + + D + + Sbjct: 207 LQWDLKVLLRHWDAIKEASESGPGPMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIFEQ 266 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 A + + K + + + L +I Sbjct: 267 AKQHIATVRPDFVERVKQYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAMT 326 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 S G A + AR +R + I + + Sbjct: 327 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH----Q 382 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 + +R ++Q A V + S E + AA R + Sbjct: 383 REVENRLRDAVHQDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPR---CHGQGTI 439 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 + + + + + ++E KD QV AI + R ++ Sbjct: 440 RGTESLALS-------ILRLMEEEAIKDNT-SQVEAIVPVDVAAFLLNEKRKAIRI---- 487 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA----T 538 I + V + ++ +Y + Y +K Sbjct: 488 ----------IEQRHEVEVYVIPDPHMMTPEYKVIRHRQDDEIEEASYKRVEKPEAKLYE 537 Query: 539 IVEYEARFGVSINVVI------GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 + E + A + + + + Sbjct: 538 PRKLERAQAPEPVLKGFSAPLESPPAAAPKVEAKPVKAASEVKPGFFSRLFAAIGSLFGG 597 Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + + +A + ++ + G R RR + D SD Sbjct: 598 DNTETEEKKAPARNGRQQNTRGRNRRNDNRRDDGRQEGRSADSRRDDSRREDGDKRRSSD 657 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 +N + + D + + ++ Sbjct: 658 SRRGRNKPEQADDKQLRDKSDKPRDERPKRERAPKREKPETVEAADD 704 >gi|332993477|gb|AEF03532.1| RNase E [Alteromonas sp. SN2] Length = 1100 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 209/670 (31%), Positives = 322/670 (48%), Gaps = 45/670 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D ++ Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + +F+ + I++VIK Q +++QI KEERG KGAA+TT+LSLAG Y VLMP Sbjct: 72 EIARTYFPKGYRFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKESLNKLDLPDGMGLIVRTAGVGKSYEELEWDLKVLLTH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ + ++A AP L+++E N+I RAIRD +DI EI++ Y +A ++L+ P Sbjct: 191 WEAISKVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A V+ Y P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++K++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ +S VC C G G IR S+ALSILR +EE Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGDSAHHVCPRCSGHGTIRGTESLALSILRILEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ I V YLLN+KR I E R GV++ ++ L + + + P Sbjct: 431 IKENTGQIEAQLPVSVATYLLNEKRKAIQSLEKRHGVNLLLIPNANLETPHYQVTRRRPD 490 Query: 572 QALVNTGHKVG--SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI- 628 L + ++V + + V ++E L + + + Sbjct: 491 DILDDASYEVELMPTVETETETTTSVPVKREEPALKGLVAPTAAPVVAPKAETPEAKAES 550 Query: 629 -----------------------------------RKRRRRRRRRRPATDHHDAGVVSDV 653 ++ R R + + + Sbjct: 551 SPSLFARIGKWLGDVLGGEDEKAKAEAEAKEKEKQKQSESRNNRGGNQSRNRNGDDRRRK 610 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + E T + ++ P + + S D Sbjct: 611 PRKNTRRNQPQNKDGEQEQRTPRSEQDDKPRASNNKPRKPRKPRDETQKPKQDQSRDNAQ 670 Query: 714 KK-TRWWKRR 722 + + R+ Sbjct: 671 DEAPKTQDRK 680 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ +EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI Y+ Sbjct: 62 ADRHGFLPLKEIARTYF 78 >gi|34497275|ref|NP_901490.1| ribonuclease E [Chromobacterium violaceum ATCC 12472] gi|34103131|gb|AAQ59494.1| probable ribonuclease E [Chromobacterium violaceum ATCC 12472] Length = 981 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 215/680 (31%), Positives = 314/680 (46%), Gaps = 53/680 (7%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D + Sbjct: 10 QAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTERHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V++ ++VQ+ K+ERGNKGAA+TTY+SLAGRY VLMP Sbjct: 70 FKEVSRSYFQGYDGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK++ LEVP GM +I RTAG R E++ D YLM+L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKDLLSQLEVPHGMSLIARTAGIGRNLEELQWDLGYLMQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A AP L+ +EG+L+ RAIRD + DI E+++ E+ + +A+ FM +MP+ Sbjct: 189 WRAIEGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTEEIHDQARQFMSHVMPN 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V+ Y+D P+F R IE Q+++ V LPS G ++I+ TEALVSIDVNS R+T+ Sbjct: 249 MLSRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSIDVNSARATK 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA++TNLEAAEEIARQLRLRDL GL+V+DFIDME KN R VE +L++ LK DR Sbjct: 309 GADIEETAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQRDVENRLRDVLKHDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ S+ E++ + C C G G+IR S AL ILR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHILRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA I E R V + ++ I L + I + Sbjct: 429 MKENTGAVHAQVPVDVATFLLNEKRAEIHSIEERLDVDVVLIPNIHLETPHYKIVRVRHD 488 Query: 572 QALV-------------NTGHKVGSDSQAPSYDKNIECVWQ------------------- 599 + P ++ V Sbjct: 489 DVAELGEAPSYTRVEVQEEDVITNFGQEKPKVERQEAAVKGITPQQPAPSASVSAAAKPV 548 Query: 600 -----------------DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 E + + +Q + E G ++ RR + Sbjct: 549 EQGGLFAGIAAWFKGLFAEPEKAPVQDAKKKPVQSSSRGNEQRGNRQRPHERRTGGQARR 608 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 +H D+ D N E Sbjct: 609 EHEQRRNGQQDEGKSRRPDERKDAERAERADRPERKEAPSRDREERNEQPRERGSRRRER 668 Query: 703 ESSNSSSDPIVKKTRWWKRR 722 E V++ + R Sbjct: 669 EGREPREPKEVREQAPREER 688 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLPF E+ Y+Q Sbjct: 62 TERHGFLPFKEVSRSYFQ 79 >gi|285018395|ref|YP_003376106.1| ribonuclease e protein [Xanthomonas albilineans GPE PC73] gi|283473613|emb|CBA16116.1| probable ribonuclease e protein [Xanthomonas albilineans] Length = 1112 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 211/602 (35%), Positives = 315/602 (52%), Gaps = 10/602 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L +P MGVI+RTAG R E++ D EYL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLTIPDDMGVIIRTAGVGRDAEELQWDLEYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W ++ E AL AP L+Y+E LI RA+RD DI EI+V + Y +AK+FM+ +MP Sbjct: 189 VWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTVEMYGDAKEFMQQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q+++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L+ +LK D Sbjct: 309 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLQTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + + +A L IP + ++ +Q + + Sbjct: 489 NELGEESTKPSYQRGTPRKLPVHAL----TKAQLNIPPAPAVTHVQHSQPAPLRETAEAT 544 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 P + + V ++ + S + P+ N Sbjct: 545 TAAPALMPPPPSVTATP-AIGIVGWLKRIFGASENQAQAPTAPEPAQRQRPQDGNRNRNG 603 Query: 691 DV 692 D Sbjct: 604 DR 605 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFV+YG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 G RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 GERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGN 110 >gi|239997983|ref|ZP_04717907.1| Rne [Neisseria gonorrhoeae 35/02] gi|240017487|ref|ZP_04724027.1| Rne [Neisseria gonorrhoeae FA6140] gi|240113909|ref|ZP_04728399.1| Rne [Neisseria gonorrhoeae MS11] gi|240118864|ref|ZP_04732926.1| Rne [Neisseria gonorrhoeae PID1] Length = 927 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 18 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 77 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 78 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 137 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 138 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 197 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 257 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 317 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 377 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 436 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 437 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 496 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 497 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 556 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 557 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRRNPRRSKREGSKIEVREA 616 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 617 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 676 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 677 GQTGKRRR 684 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 10 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 69 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 70 TDRHGFLPFKEVSRSYF 86 >gi|189349900|ref|YP_001945528.1| ribonuclease [Burkholderia multivorans ATCC 17616] gi|189333922|dbj|BAG42992.1| ribonuclease [Burkholderia multivorans ATCC 17616] Length = 1054 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 191/468 (40%), Positives = 281/468 (60%), Gaps = 3/468 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 83 DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 ++ L+E L++P GM +I RTAG R+ E++ D YL++LW + + + Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201 Query: 284 A--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP V++Y D Sbjct: 202 PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHD 261 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA + Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK DRARVQ+G IS Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 +V +LLN+KR I + E+RF V I ++ L + +E+ A ++ Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 ++ + + E + A PK E+ S R Sbjct: 502 WKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSPAPQR 549 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|238762183|ref|ZP_04623155.1| Ribonuclease E [Yersinia kristensenii ATCC 33638] gi|238699530|gb|EEP92275.1| Ribonuclease E [Yersinia kristensenii ATCC 33638] Length = 1137 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 201/675 (29%), Positives = 315/675 (46%), Gaps = 57/675 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTYEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLP---------IPKSESLEDIQDNI 619 + + + + + + + P ES + Sbjct: 488 KGEEVPTLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPPESAPAVTTVK 547 Query: 620 VS---------------------------------------EESTGVIRKRRRRRRRRRP 640 + E++ +R RR RR Sbjct: 548 PTVAPQKTDAAVEQPGFFSRLLSGLKDIFGTSAEEIKPVEVEKTETSENRRNDRRNPRRQ 607 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + D G + N D+ D N + + P Sbjct: 608 NNNRKDRGDRTPREGRDNSSRDNSSRDNSGRDNANRDNSNREGREDQRRNKRPTQQTAAP 667 Query: 701 EMESSNSSSDPIVKK 715 ++ +D ++ Sbjct: 668 LAQTEVVEADKAQRE 682 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|241758906|ref|ZP_04757018.1| ribonuclease E [Neisseria flavescens SK114] gi|241320727|gb|EER56960.1| ribonuclease E [Neisseria flavescens SK114] Length = 988 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 206/631 (32%), Positives = 320/631 (50%), Gaps = 11/631 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 34 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 93 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 94 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 153 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 154 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 212 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MPS Sbjct: 213 WKAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 272 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 273 NVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 332 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 333 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 392 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 393 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 452 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 453 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 512 Query: 572 QALVNTGHKVGSDSQAPSYD-------KNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + ++ + + + + A+ + ++ + + Sbjct: 513 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKASRPEPAVKGVRHTQPAPVVAEQKNGSWW 572 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +R A A V +S + + + + N Sbjct: 573 DSFKAWLKRIFGGNTAAETAPVAEVAEKRTSNGDNRNGNSGNRRANNRRQNPRRNNRHDG 632 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E +V+ V + E+ ++ S +K Sbjct: 633 SKVEVREVNAEAVDSKFEENKSNESRNDERK 663 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 26 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 85 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 86 TDRHGFLPFKEVSRSYFR 103 >gi|313201078|ref|YP_004039736.1| Rne/Rng family ribonuclease [Methylovorus sp. MP688] gi|312440394|gb|ADQ84500.1| ribonuclease, Rne/Rng family [Methylovorus sp. MP688] Length = 913 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 212/647 (32%), Positives = 316/647 (48%), Gaps = 27/647 (4%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 ++ A+ D D+ I + + + I E S+ +A + ++ Sbjct: 10 QSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K + + IQ+V+K Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVARSYFQNDSDGRARIQDVLKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I L+++ LEVP GM +I RTAG R E++ D YL++L Sbjct: 130 NNPRGGGVSRRIEGEDR-NELRDLMAQLEVPNGMSIIARTAGIGRNIEELQWDLNYLLQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + + P L+Y+EG+L+ RAIRD + DI EI++ + +A FM +MP Sbjct: 189 WTAIEGASTMQSGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQFMNHVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V+ Y D P+F R IE Q+++ EV LPS G ++I+ TEALVS+DVNSGRST+ Sbjct: 249 NVSRVKLYRDEIPLFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVDVNSGRSTK 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE TA TNLEAA+E+ARQLRLRDL GL+V+DFIDME ++N R VE +L+++L DR Sbjct: 309 GSDIEHTAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLRDALHHDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ G IS FGLLE+SRQR+R S+ ES C C G G+IR S AL ILR +E Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHILRITQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + I V + +LLN+KRA I + E R GV + ++ I + + I + Sbjct: 429 MKENSAIIQVQLPVEAATFLLNEKRAEIHKIEQRSGVQVVLIPNIHMETPNYNISRIRSD 488 Query: 572 QALVNTGHKV-------------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 T + Q + V P P + Sbjct: 489 DVNEETSRASYQMVELPTEGEYNPAAQQEVKAVRAEAAVKGITPASPAPIATEKAVEVPA 548 Query: 619 IVSEEST--------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 S ++ + +D++ ++ N + + P Sbjct: 549 APSLFGRFKNWLSKITETKEEVVAPETTKQRSDNNRNNRNQPRNARNNRNGRNGERSERP 608 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + N + E + P E + + +P ++ R Sbjct: 609 AAERNAERGSERNNERAERGER--PANERSERQERGNRQEPRQQEGR 653 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY +TR+EPSL+AAFV+YG Sbjct: 2 KRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y+Q SD +A +++ + D G+ Sbjct: 62 TDRHGFLPFKEVARSYFQN-DSDGRARIQDVLKEGQELIVQVDKDERGN 109 >gi|86750126|ref|YP_486622.1| ribonuclease [Rhodopseudomonas palustris HaA2] gi|86573154|gb|ABD07711.1| RNAse E [Rhodopseudomonas palustris HaA2] Length = 1060 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 289/603 (47%), Positives = 387/603 (64%), Gaps = 10/603 (1%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151 Q + D++ D + + + ++ +E+ + +D Sbjct: 257 AEGAEQEHGDDAGDELNDADGDADLEDAARSDTEADDEDEDEDEDDEAEEDIVESVGGDD 316 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 V PE + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMP Sbjct: 317 VLEEVPERA-FRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMP 375 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 NT++G ISRKIT+ DR LKE+ + L+VP GMG+ILRTAGASRTK EIKRDFEYL+R+ Sbjct: 376 NTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRM 435 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM +LMPS Sbjct: 436 WETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHMLMPS 495 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 R V+ Y D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGRSTR Sbjct: 496 NVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTR 555 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 EH IEDTAL+TNLEA+EE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++DR Sbjct: 556 EHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDR 615 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L Sbjct: 616 ARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEIL 675 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSP 570 ++ HN+IV T +DV LY+LNQKR + + E F V+++VV + + F I++G Sbjct: 676 MKGATHNLIVRTRADVALYVLNQKRGHLRDLETGFRVTLSVVSDPTVTGQQSFVIDRGEQ 735 Query: 571 VQALVNT-------GHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSE 622 V L + ++ P D + ++ E Sbjct: 736 VHTLESAKALLAAQVAAYPVQAEEPFEDDEGYEFEAEIETDETVGLADEHASDSGEGEGE 795 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 ++RRRRR R A + D + + V++ + E D + +G Sbjct: 796 GDARKRKRRRRRRSRTGEAREAGAPREDGDAALVPEVLEAVSEDDSEDGDDSADGAEGDG 855 Query: 683 AHG 685 Sbjct: 856 DAR 858 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 100/169 (59%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E + + + H Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSTRRRSRHRSHRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC 169 ++ +D S++ D +R Sbjct: 121 RGSGERVTSEIVEASAGAVAEPHDQFSDLADSDPADNGHAHADHERPMH 169 >gi|152979950|ref|YP_001353036.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille] gi|151280027|gb|ABR88437.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille] Length = 974 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 188/466 (40%), Positives = 275/466 (59%), Gaps = 3/466 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R I++ ++ Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN +G +SR++ Sbjct: 85 RNASIKDALREGQEIMVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E L++P GM VI RTAG R E++ D YLM+LW + + Sbjct: 145 EDRQE-LRETMDKLDLPQGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSGGGA 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y+E +L+ RAIRD + DI EI++ ++ Y +A+ FM +MP V++Y D P+ Sbjct: 204 FLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAQQFMSHVMPDMVHRVKRYRDDVPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ + V LPS G ++I+ TEALVS+DVNS R+TR IE TA TN E Sbjct: 264 FSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRGSDIETTAFHTNCE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQLRLRDL GLIV+DFIDME KN R VE +LK++L DRARVQ+G IS FGL+ Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMENAKNQREVETRLKDALHYDRARVQMGKISRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R S+ E + C C G G+IR S AL +LR ++E ++ + +I V Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENSASIHVQAPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +LLN+KR I++ E R VS+ ++ L + +E+ + + + Sbjct: 444 DVAAFLLNEKRGEILKIETRHRVSVILIPNKHLETPHYKLERIKHDDPRLEETQASYAMT 503 Query: 586 QAPSYDKNIECVWQDE--ALLPIPKSESLEDIQDNIVSEESTGVIR 629 + D + ++E D IV + + Sbjct: 504 EEADTDISYGKRQKEEGKPRQEAMVKGITPDQPAPIVERKPVEAAK 549 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q K NIY +TR+EPSL+A FV YG Sbjct: 2 KRMLFNATQQEELRVAIVNGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A +K++ + + G+ Sbjct: 62 EDRHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGN 110 >gi|238789121|ref|ZP_04632910.1| Ribonuclease E [Yersinia frederiksenii ATCC 33641] gi|238722885|gb|EEQ14536.1| Ribonuclease E [Yersinia frederiksenii ATCC 33641] Length = 1171 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 190/541 (35%), Positives = 292/541 (53%), Gaps = 9/541 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P + SL + +T V Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATMERKRPEQPALATFSLPTEVPPESAPAATAVK 547 Query: 629 R 629 Sbjct: 548 P 548 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|119897904|ref|YP_933117.1| ribonuclease E [Azoarcus sp. BH72] gi|119670317|emb|CAL94230.1| probable ribonuclease E [Azoarcus sp. BH72] Length = 1014 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 218/653 (33%), Positives = 319/653 (48%), Gaps = 37/653 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D D+ I + + + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + P + I+E ++ Q L+VQ+ K+ERGNKGAA+TTY+SLAGRY VLM Sbjct: 70 FKEISRSYFQPGVDAGKASIKEALREGQELIVQVEKDERGNKGAALTTYISLAGRYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR++ + L+++ LEVP GM +I RTA R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRVEGDERAE-LRDVMDQLEVPGGMSLIARTAAIGRSAEELQWDLNYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A + L+Y+EG+L+ RAIRD + +I EI++ + Y +A+ FM +MP Sbjct: 189 LWTAIEGAATSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDIYEQARQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y+D P+F R IE Q++S + +V LPS G V+I+ TEALVSIDVNSGR+T Sbjct: 249 GNVNRVKRYQDDVPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSIDVNSGRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+EIARQLRLRDL GLIV+DFIDME +KN R VE +L+++L+ D Sbjct: 309 KGADIEETAFRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVENRLRDALRHD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGLLE+SRQR+R ++ E++ C C G G+IRS S AL I+R +EE Sbjct: 369 RARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALHIVRILEEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + + DV +LLN+KR I E R V + +V L I + Sbjct: 429 AMKENTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPQHEIIRLRH 488 Query: 571 VQALVNTGHKV-------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--- 620 Q + +D + KN + + EA + E I + Sbjct: 489 DQLNLEDIALASYQMVQKPADEEMRLPTKNGDKPARQEAAVKGISPEQPAPIVEARAEAA 548 Query: 621 ----------------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 E +R A + + + Sbjct: 549 PAPAAVAPAPRRGLLDWILGLFRSEPAPAATPAPAETPAKREARPRGERNGDARRGNGNR 608 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + E T ENG H E + E +D Sbjct: 609 NRREGQRERTERDGETPRARPENGRHARGERSESVEREKPQQERAERPERADR 661 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 46/109 (42%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY A +TR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI Y+Q +A +KE+ + + G+ Sbjct: 62 AERHGFLPFKEISRSYFQPGVDAGKASIKEALREGQELIVQVEKDERGN 110 >gi|319902743|ref|YP_004162471.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108] gi|319417774|gb|ADV44885.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108] Length = 524 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 151/565 (26%), Positives = 265/565 (46%), Gaps = 62/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D ++ EL E GN+YL ++ ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKQLVELQSEGRSLYFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + +SL Sbjct: 60 VGYEKDAFLHYLDLGPQF---------------------------------------NSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPITKATILPDLE------------------KDGTVSNTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ LS AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W++ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKATKFPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E Y E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFESIHVNDEAVYHEIKDYVTLIAPERADIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 ++ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H + Y+ + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYIAAYINQGIVSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLF 563 +++ ++G I ++ +LA + Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEY 505 >gi|238758383|ref|ZP_04619560.1| Ribonuclease E [Yersinia aldovae ATCC 35236] gi|238703287|gb|EEP95827.1| Ribonuclease E [Yersinia aldovae ATCC 35236] Length = 1125 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 199/658 (30%), Positives = 321/658 (48%), Gaps = 32/658 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHISALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-------------ALLPIPKSESLEDIQ 616 + + + + + +A E + + +P + ++ + Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPQEEAAIERKRPEQPALATFSLPTEVPPEAAPAVASVN 547 Query: 617 DNIVSEESTGVIRKRRR---------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + + +T V + + +T+ V + + + Sbjct: 548 ATVAPQPATTVNTDQPGFFSRLFSGLKGIFAAASTEAEVKPVEVEKTETSENRRNDRRNP 607 Query: 668 MEPSDITNHNLLENGAHGF--TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ G + S S ++S D + T + R+ Sbjct: 608 RRQNNGRKDRGERTPREGRDNSTRDSSSRDNNSRDNSSRDSNSRDNNSRDTASREGRE 665 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|194099975|ref|YP_002003114.1| Rne [Neisseria gonorrhoeae NCCP11945] gi|268593833|ref|ZP_06128000.1| ribonuclease E [Neisseria gonorrhoeae 35/02] gi|268599971|ref|ZP_06134138.1| ribonuclease E [Neisseria gonorrhoeae MS11] gi|268604571|ref|ZP_06138738.1| ribonuclease E [Neisseria gonorrhoeae PID1] gi|193935265|gb|ACF31089.1| Rne [Neisseria gonorrhoeae NCCP11945] gi|268547222|gb|EEZ42640.1| ribonuclease E [Neisseria gonorrhoeae 35/02] gi|268584102|gb|EEZ48778.1| ribonuclease E [Neisseria gonorrhoeae MS11] gi|268588702|gb|EEZ53378.1| ribonuclease E [Neisseria gonorrhoeae PID1] Length = 919 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 211/668 (31%), Positives = 320/668 (47%), Gaps = 40/668 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAQLDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR V+E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTALHVLRMVQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTD 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEES--- 624 + ++ + E + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWW 548 Query: 625 ----------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ R R + S V + Sbjct: 549 DSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRRNPRRSKREGSKIEVREA 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-------SDPIVKK 715 + + + NG E D + + E++S N + P + Sbjct: 609 AGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETE 668 Query: 716 TRWWKRRK 723 + KRR+ Sbjct: 669 GQTGKRRR 676 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF E+ Y+ Sbjct: 62 TDRHGFLPFKEVSRSYF 78 >gi|241204128|ref|YP_002975224.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858018|gb|ACS55685.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 953 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 332/619 (53%), Positives = 414/619 (66%), Gaps = 2/619 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149 E+ A + + S+ E + + +++ +V+ +V Sbjct: 183 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGA 242 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL Sbjct: 243 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 302 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM Sbjct: 303 MPNTARGGGISRKITNPADRKRLKEIARLLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 362 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISE+IVSGE+GYREAKDFMK+LM Sbjct: 363 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKMLM 422 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS Sbjct: 423 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRS 482 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK Sbjct: 483 TREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 542 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR +EE Sbjct: 543 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEE 602 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 YLL+ T HNI V T D+ LYLLN KR TI++YE+RFGV+I + + + F I++G Sbjct: 603 YLLKNTTHNITVRTTPDIALYLLNHKRQTIIDYESRFGVAIIIDADGSVGAQHFAIDRGE 662 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV+ V + D +I +E + + ++ + +E R Sbjct: 663 PVENPVKIETLFNFAAIPEDDDDDIVIEVDEEEDEELEEKPAVSERPVAARAESEADGNR 722 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 KR+RRRRRR + + + ++ D + + Sbjct: 723 KRKRRRRRRGRNGNAEQPLSATGEAGDEDEDGDDEGGEGDENTEATPETRAESEESQRRK 782 Query: 690 YDVSIPPVSTPEMESSNSS 708 S Sbjct: 783 RRRRGKRGGRRNRAEDGSE 801 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 82/121 (67%), Positives = 91/121 (75%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ E V T V + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSKQDQP 120 Query: 121 E 121 + Sbjct: 121 D 121 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 4/158 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + L + D EA+ +E ++ Q + + ES Sbjct: 795 RAEDGSELTAGEAGEDNGGDEDEGDDVSNDGAPSEAVAVEAIAEQADEGQAAMAAVESAP 854 Query: 627 --VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R R RR V++ + + + + + Sbjct: 855 VITEEVKPARARGRRKPAAAPVEEPVAETAPAVEAEPELVEASADLETSVQEE-AKPVRA 913 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N S P V + +E+ D KK WW+RR Sbjct: 914 NRESNISSSEPTVKSTRVENVEGD-DGKPKKAGWWQRR 950 >gi|332306495|ref|YP_004434346.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173824|gb|AEE23078.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1087 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 203/657 (30%), Positives = 320/657 (48%), Gaps = 32/657 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 12 EELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + KF+ + I++VIK Q +++QI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 72 EIARTYFPQGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LK+ L +P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTD-LKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E A + AP L+++E N+I RAIRD +DI EI++ Y +A ++L+ P Sbjct: 191 WTAISEAADSRPAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A V+ Y P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FANRVKLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++K++++ DR Sbjct: 311 GSDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ +S VC C G G +R S+ALS+LR +EE Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTESLALSVLRIMEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ I +V YLLN+KR + E R V + ++ + +++ + P Sbjct: 431 IKDNTGQIEAQLPVNVATYLLNEKRGAVASVEKRHKVQLVIIPNPNMETPHYHVARRRPD 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNI------ECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 A+ + + V + + ++ + K+ + ES Sbjct: 491 DAIHDMSYNVELMKNEDTEADKAVTATPVKEQPALQSFVSPAKAAPAQTQGAKATEVESV 550 Query: 626 G-------------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + +R+ + + ++ + +D+ Sbjct: 551 SLLTKIASWLKSLFAPAPQPEPEPEVKPQRKPQQRRNRNNPRRGKQGDNRSEGRNDNRSE 610 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + D P + S +++ K+ + RK Sbjct: 611 SRGEKADSRDGNEKPNNRK-PRRNDNRKPRNDNKTAKDSTNNTPDQKKEQKPAAPRK 666 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 52/77 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 62 AERHGFLPLKEIARTYF 78 >gi|146311256|ref|YP_001176330.1| ribonuclease E [Enterobacter sp. 638] gi|145318132|gb|ABP60279.1| RNAse E [Enterobacter sp. 638] Length = 1048 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 194/597 (32%), Positives = 306/597 (51%), Gaps = 12/597 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLGFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S+ALSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + EAR GV +V ++ + + + Sbjct: 431 ALKENTKEVHAIVPVPVASYLLNEKREAVSAIEARQAGVRCIIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + E + P + + + +E+T Sbjct: 491 KGEETSTLSYLLPKLHEEEMAMPSDEEPAERKLPEQPALATFIMPEAPPAPSEQEATVKP 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ R +++ G++ + S + + E + Sbjct: 551 AVQKSETEARVTSSE---PGLLGRIFSALKKMFAGEEAQPEEPKAAPKEEKQERPQQ 604 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|186475583|ref|YP_001857053.1| ribonuclease [Burkholderia phymatum STM815] gi|184192042|gb|ACC70007.1| ribonuclease, Rne/Rng family [Burkholderia phymatum STM815] Length = 1092 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 204/636 (32%), Positives = 317/636 (49%), Gaps = 11/636 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ +K Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGTQGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR+ I + E+RF V++ +V L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVIR 629 A ++ ++ + + E + PK E+ + I + + Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEKPAPSAPVRTP 550 Query: 630 KRRRRRRRRRPATDHHD---AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +PAT G+ + + +P E Sbjct: 551 APAAATVEVKPATGGFIGWLKGLFGMQPAAPAPAPAPVEKAAKPVRGERTERGERTGERG 610 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + +R Sbjct: 611 GDRNRNRRSGGAGGRDAAGRGEGTATQGRQGQPSQR 646 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGN 110 >gi|117619748|ref|YP_856763.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561155|gb|ABK38103.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1039 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 209/681 (30%), Positives = 321/681 (47%), Gaps = 59/681 (8%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 10 QEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + ++ + I+EV++ Q ++VQI KEERG KGAA+TT++SLAG Y VL Sbjct: 70 LKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE GL VP GMG+I+RTAG ++ E++ D L+ Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLL 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 WD++ + + + AP L+++E N+I RAIRD +D+ EI++ + AK ++L+ Sbjct: 189 NHWDSIHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ Y+ +F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++ + Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLEMSRQR+R S+ ES++ +C C+G G IR S+ALSILR +EE Sbjct: 369 DRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSILRLIEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ + DV YLLN+KRA+I E R V + ++ L + + + Sbjct: 429 EAMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETPHYEVTRIR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------------------------- 601 + +++ ++ P Y V + E Sbjct: 489 QNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAPAAPAPVVAPAAPA 548 Query: 602 --------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 P + + + G +R R R + Sbjct: 549 APEAGLFGKLFKAISGLFGSDTAPADVKAPADKPAAQREARKDEGHRHQRDETRSRGQRG 608 Query: 642 TDHHDAGVVSDVSSIQNV-----IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + G S + + + P E P Sbjct: 609 RRDDNRGNRSPADAAEKREAGANREGGESRNRRPRKEREPRQEREARGEVREQRMEREPR 668 Query: 697 VSTPEMESSNSSSDPIVKKTR 717 + + + ++ R Sbjct: 669 EAREPRQEREPRAPRPAREPR 689 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIARNYF 78 >gi|238791867|ref|ZP_04635504.1| Ribonuclease E [Yersinia intermedia ATCC 29909] gi|238728971|gb|EEQ20488.1| Ribonuclease E [Yersinia intermedia ATCC 29909] Length = 1155 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 188/541 (34%), Positives = 290/541 (53%), Gaps = 9/541 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P + SL + + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPPEAAPANVNAK 550 Query: 629 R 629 Sbjct: 551 P 551 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|86357279|ref|YP_469171.1| ribonuclease E protein [Rhizobium etli CFN 42] gi|86281381|gb|ABC90444.1| ribonuclease E protein [Rhizobium etli CFN 42] Length = 961 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 338/627 (53%), Positives = 415/627 (66%), Gaps = 2/627 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149 E+ A T + ++ E + + +++ +V+ +V Sbjct: 189 EAEGASTVDNDDDTPAGGTMAAMVETDTISEDIDTSKRRHDDDDDDDDHGEEEVIESVGA 248 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL Sbjct: 249 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 308 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM Sbjct: 309 MPNTARGGGISRKITNPQDRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 368 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE+GYREAKDFMK+LM Sbjct: 369 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLM 428 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS Sbjct: 429 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 488 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK Sbjct: 489 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 548 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G G++RSQSSVAL +LR +EE Sbjct: 549 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVALHVLRGIEE 608 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 YLL+ T HNI V T D+ LYLLN KR TIV+YEARFGV+I + + + F I++G Sbjct: 609 YLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYEARFGVAIIIDADGSVGAQHFAIDRGE 668 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV+ V + D +I ++ + + + + SE R Sbjct: 669 PVENPVKIESLFNFAAIPEDEDDDIVIEADEDEDEELEEKAAATERPAAARSEGEGEGNR 728 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 KR+RRRRRR + + +D E + EN + Sbjct: 729 KRKRRRRRRGRNGNAEQPIAAGETIDEDEDGEDEGSEGDENAAAAPETRAENEESQRRKR 788 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 E + + + Sbjct: 789 RRRGKRGGRRNRAEDGSEITAEEAGED 815 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 90/173 (52%), Positives = 105/173 (60%), Gaps = 7/173 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVAD-------DVTHGDVT 113 YGGNRHGFL F EIHPDYYQIP +DRQALL+ E V D++ D Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP 120 Query: 114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 S E P+ + T EE + V + + K+ Sbjct: 121 DVGIVSAEAPEPVVAADEATTEEIAAAPEIVAPPEVAEEAPAKKAKPRRSRKK 173 Score = 45.7 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 1/150 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + S+ + ++ + ++ + + K Sbjct: 810 EEAGEDNGDTSEGEGEEITNDVAPSEAETVETIAEQAGEGQAAMAAVEGAAVVTEDVKPA 869 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 R R RR+PA + V ++ + + N Sbjct: 870 RGRGRRKPAAPPVEEPVTEAGAAPAVEAEPEVVEASADLATPAQEEAKPVRANRESNISS 929 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S P V + ++ S + KK WW+RR Sbjct: 930 SEPTVKSTRTDNGESD-EGKPKKAGWWQRR 958 >gi|153949428|ref|YP_001400546.1| ribonuclease E [Yersinia pseudotuberculosis IP 31758] gi|152960923|gb|ABS48384.1| ribonuclease E [Yersinia pseudotuberculosis IP 31758] Length = 1216 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|254477227|ref|ZP_05090613.1| ribonuclease E [Ruegeria sp. R11] gi|214031470|gb|EEB72305.1| ribonuclease E [Ruegeria sp. R11] Length = 1004 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 252/480 (52%), Positives = 328/480 (68%) Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171 +D ++ A + S + ++ S ++ K R+Y IQ Sbjct: 246 AADGSDDDVKADDEEAADGDVSRAADATSKDENIESVADEDDSEDIRPPRKPRPRRYKIQ 305 Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 EVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRY VLMPNT++G ISRKITN DRK Sbjct: 306 EVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKK 365 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 LKEIA L+VP G G+I+RTAGA RTK EIKRD+EYL RLW+ +REL L S+AP +YEE Sbjct: 366 LKEIATELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEE 425 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 G+LIKR+IRDLY ++I E++V GE+GYR AKDFMK++MPS+A+ V+ Y+D P+F R + Sbjct: 426 GDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARYQV 485 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E L + V L S GY++I TEALV+IDVNSGR+T+E IE+TAL+TNLEAAEE+A Sbjct: 486 ETYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVA 545 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRDLAGLIV+DFIDM+E+KNN +VEK++K+ LK DRAR+QVG IS FGL+EMSRQR Sbjct: 546 RQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQR 605 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 +R ++E+TT C +C G G IRS S+ALSILR +EE + + ++V + YL Sbjct: 606 LRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVSIANYL 665 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 +NQKR I + EAR+G+S+ + L F +EK +V D Sbjct: 666 MNQKREHIAQIEARYGLSVRIEGDAHLVSPDFTLEKFKTASRVVPVATAPVVSVDTSIMD 725 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 77/144 (53%), Positives = 93/144 (64%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ N+VEE DFESE+K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+AL++E A ++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEEETKPKRSSRSRRS 120 Query: 121 EEVAPIANFSQETEEESIISANND 144 A + E + + +D Sbjct: 121 RTKAAEVKSADVVETKDVTPEGDD 144 >gi|312115769|ref|YP_004013365.1| ribonuclease, Rne/Rng family [Rhodomicrobium vannielii ATCC 17100] gi|311220898|gb|ADP72266.1| ribonuclease, Rne/Rng family [Rhodomicrobium vannielii ATCC 17100] Length = 1049 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 259/451 (57%), Positives = 336/451 (74%) Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 + V + K+ R Y IQEVIK QI+L+Q+VKEERG+KGAA+T Sbjct: 297 ESATPAPVEVVGSEDALEELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALT 356 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 TYLSLAGRY+VLMPNT+ G ISRKIT P DRK LKEIA+ L+VP GMG+I+RTAGASRT Sbjct: 357 TYLSLAGRYTVLMPNTASGGGISRKITVPADRKRLKEIAQELDVPEGMGLIIRTAGASRT 416 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 K EIKRDFEYL+RLW+NVR+L L S AP LVYEEG+LIKR+IRDLY KDI EI+V+G++ Sbjct: 417 KAEIKRDFEYLLRLWENVRDLTLKSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDEA 476 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 + EA++FM++LMPS+A+ V Y++P PIF + +E QL+ + VTL S GY+++NQTE Sbjct: 477 HHEAREFMRMLMPSHAKNVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTE 536 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 ALV+IDVNSGRSTRE+ IEDTAL+TN+EAAEE+ARQ+RLRDLAGLIV+DFIDM+E++NNR Sbjct: 537 ALVAIDVNSGRSTREYSIEDTALKTNMEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNR 596 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 SVE+KLKESL+ DRAR+QVG IS+FGL+EMSRQR+R V+E +T C C+G G+IRS Sbjct: 597 SVERKLKESLRHDRARIQVGHISHFGLMEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSIE 656 Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 SVAL ILRS+E++L A NI + ++ LY+LN KR+ + + E R+GV+I + + Sbjct: 657 SVALMILRSIEDHLRTQGAANITLTASTEAALYILNNKRSYLRDIELRYGVTIVLQPDDK 716 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 F +E+G+ V +V A Sbjct: 717 AHGAHFVLERGAEAVPPVVGDSRVVHMETAS 747 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 76/150 (50%), Positives = 95/150 (63%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV R NRVEE D+ES +KQ++GNIYLAKV R+EPSLQAAFV+ Sbjct: 1 MANKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVN 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP + R+ L+KE + A + + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVAVREQLMKEEAADRQGRYRDAGESRPNRRSSDKAPEA 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVE 150 E +N S E + ++A + + Sbjct: 121 EGGTQTSNESGNGESQPDVAAAAGEAPSED 150 >gi|115351040|ref|YP_772879.1| ribonuclease [Burkholderia ambifaria AMMD] gi|115281028|gb|ABI86545.1| RNAse E [Burkholderia ambifaria AMMD] Length = 1068 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 196/539 (36%), Positives = 296/539 (54%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPSAAPQR 549 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|327190276|gb|EGE57376.1| putative ribonuclease protein [Rhizobium etli CNPAF512] Length = 958 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 322/536 (60%), Positives = 391/536 (72%), Gaps = 2/536 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149 E+ A + + S+ E + + +++ +V+ +V Sbjct: 186 EAEGASSIDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGA 245 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL Sbjct: 246 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 305 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM Sbjct: 306 MPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 365 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LM Sbjct: 366 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLM 425 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS Sbjct: 426 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 485 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK Sbjct: 486 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 545 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G G++RSQSSVAL +LR +EE Sbjct: 546 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCAGTGHVRSQSSVALHVLRGIEE 605 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 YLL+ T HNI V T D+ LYLLN KR TIV+YE+RFGV+I + + + F I++G Sbjct: 606 YLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYESRFGVAIVIDADGSVGAQHFAIDRGE 665 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 V+ V + D +I ++ + + + + SE + Sbjct: 666 AVENPVKIETLFNFAAIPEDEDDDIIIEADEDEDEELEEKPAAAERAATARSEGES 721 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 86/166 (51%), Positives = 104/166 (62%), Gaps = 4/166 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ + +DV H + D S Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLST 116 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 ++ + E E ++ + + +R Sbjct: 117 QDQPDVGIVPAEAPEPVAVADEPAPAAEAAPAAAEEAPAKKARPRR 162 Score = 49.2 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 41/158 (25%), Gaps = 2/158 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL--EDIQDNIVSEES 624 + L+ S S D V EA + +E + V + Sbjct: 798 RAEDGSELMAGEAGEDSGSDEDEGDDVSNDVAPAEAAIVETVAEQAGEDQAAAAAVEGAA 857 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R R RR A +++ + + T Sbjct: 858 VVTEDVKPARGRGRRKAAASPVEAPMAEAEAAPAAEVEPEVAEASADLQTPAQEEAKPVR 917 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E+ S P + S D KK WW+RR Sbjct: 918 ANRESTITSSEPTVKSTRSENGESDDGKPKKAGWWQRR 955 >gi|301167908|emb|CBW27493.1| RNase G [Bacteriovorax marinus SJ] Length = 526 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 165/569 (28%), Positives = 281/569 (49%), Gaps = 52/569 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFES----EHKKQIKGNIYLAKVTRVEPSLQA 56 M +++I+ + E R ++ + + + E E K G+I+ +V RV P +Q+ Sbjct: 1 MGKQLIINQTL-NECRAALVLNGEILDFLMERTTEGEDKVPQVGDIFKGRVLRVLPGMQS 59 Query: 57 AFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 AFVD G + FL + IP L ++ +A+ + + G+V Sbjct: 60 AFVDIGWEKAAFLYVDD-----AYIPT-----LQEQREMAEKTRKMIESQERVGEVIPDE 109 Query: 117 DHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176 +L E + I+ +K Sbjct: 110 FSTLNESVN-----------------------------------MRFRPEHATIETFLKE 134 Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 Q +LVQ+ KE KG VT ++LAGR+ V MP +SR+I N +R+ L+EI Sbjct: 135 GQEILVQVAKEPISTKGPRVTRQITLAGRHVVFMPFIEHTG-VSRRIENEGERERLREIL 193 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 + G GVI RT ++ +K D+ L+++W +V++ A S + Y + + I+ Sbjct: 194 DTIRPE-GKGVIARTVAEGQSYRTLKSDYNMLVKIWKDVQKKAEKSKPSTVCYRDLSFIQ 252 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R +RD+ +D+SEII+ + +E + F +PS Y+D PIF + G++++++ Sbjct: 253 RLLRDITDEDVSEIIIDSKDNQKEVEKFTSKYLPSMKGKTVLYDDTTPIFEKFGVDMEIE 312 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 +V L S G + I+QTEALVSIDVN+G+ +E+T L+TN+EA +EIA QLRL Sbjct: 313 RGISNKVYLRSGGSLNIDQTEALVSIDVNTGKFVGRKNLEETILRTNMEAVKEIAYQLRL 372 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 R+ G+I++DFIDME++++ +V L E+LKKDR++ V IS GL+EM+R+R R ++ Sbjct: 373 RNCGGIIIIDFIDMEKEEHRETVYNLLIEALKKDRSKTNVLPISGLGLVEMTRKRTRDTL 432 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 + C YC+G G ++S +V ++R + + L + T + ++ H +V L Sbjct: 433 TRVLCEPCPYCEGTGRVKSTLTVCYELIRELLKVLNKSTGSKVYIYAHPEVTARLCGDDL 492 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYI 565 I E +G S+ + + + I Sbjct: 493 DLIENLEEGYGKSLQIRSENNYHIEQYEI 521 >gi|170023918|ref|YP_001720423.1| ribonuclease E [Yersinia pseudotuberculosis YPIII] gi|169750452|gb|ACA67970.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis YPIII] Length = 1216 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|222085644|ref|YP_002544174.1| ribonuclease E protein [Agrobacterium radiobacter K84] gi|221723092|gb|ACM26248.1| ribonuclease E protein [Agrobacterium radiobacter K84] Length = 960 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 316/539 (58%), Positives = 391/539 (72%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 A + E+ + + + + S + + +++ Sbjct: 172 DAPVAEAKVDAPGEDEEGPSGEMAAMVETDSISEDVDVSKRRHDDDDDDDHDHEEEVIES 231 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRY Sbjct: 232 VGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRY 291 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 SVLMPNT++G ISRKITNP DRK LKEIA+ LEVP GMGVILRTAGA+RTK+E+KRDFE Sbjct: 292 SVLMPNTARGGGISRKITNPQDRKRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFE 351 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YLMRLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISE+IVSGE+GYREAKDFMK Sbjct: 352 YLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMK 411 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 +LMPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNS Sbjct: 412 MLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNS 471 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 GRSTREH IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE Sbjct: 472 GRSTREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKEC 531 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 LK DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR Sbjct: 532 LKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRG 591 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 +EEYLL+ T H+I V T ++ LYLLN KR TIV+YE+RFGV+I + + + F I+ Sbjct: 592 IEEYLLKNTTHDITVRTTPEIALYLLNHKRQTIVDYESRFGVAIIIGADNAVGAQHFAID 651 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +G PV+ V + D +I ++ + + + + S E+ Sbjct: 652 RGEPVENPVKIETLFNFAAIPEDDDDDIVIEADEDEDEELEEKAASVEQAPVARSSETN 710 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 104/163 (63%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ + V T D++ + + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDDDVEHVETALDLSQQDQPDI 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKK 163 V + EE + A VK P KK Sbjct: 121 GIVEKDEAPAAIAEEAPALEATAPAEEAEAPVKKAKPRRSRKK 163 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 8/155 (5%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + ++ + + + + + + + K + R Sbjct: 803 EESGSDEGADGEDDGENDVAVTVAEIVIAEGEAAVESQPAMAAVETASTVTEDVKPAKSR 862 Query: 636 RRRRPATDHHD--------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 RR+P + A V + I + D EP + Sbjct: 863 SRRKPKAEASPVEAPVVEAAPVADAEAETVTEIAVALDTPAEPVVAAEPEAAKPARANRE 922 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N S PV + + SD KK WW+RR Sbjct: 923 SNVSSSSEPVVKSTRTNEGTDSDGKPKKAGWWQRR 957 >gi|114320586|ref|YP_742269.1| ribonuclease E [Alkalilimnicola ehrlichii MLHE-1] gi|114226980|gb|ABI56779.1| RNAse E [Alkalilimnicola ehrlichii MLHE-1] Length = 1073 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 196/557 (35%), Positives = 297/557 (53%), Gaps = 6/557 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++ ++ Q ++VQ+ KEERG KGAA+TTY+SLAGRY VLMPN + +SR+I Sbjct: 87 GRPSIRDAVREGQEVVVQVDKEERGTKGAALTTYISLAGRYLVLMPNNPRAGGVSRRIEG 146 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + ++E R L+VP GMG+I+RTAG RT E++ D +YL++LW +++ A AP Sbjct: 147 SDRAE-IREALRQLDVPEGMGLIVRTAGVGRTVEELQWDLDYLLKLWSAIQKAAEARSAP 205 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y+E ++I RA+RD DI EI++ + + +A +F++ +MP + ++ Y+D P+ Sbjct: 206 FLIYQESDVIIRALRDYLRSDIGEILIDDPQVFEKAVEFVEQVMPYNRQKLKYYDDRVPL 265 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q++S Q +V LPS G ++I+ TEAL+SID+NS R+T+ IE+TAL TNLE Sbjct: 266 FTRYQIESQIESAFQRDVRLPSGGAIVIDHTEALISIDINSARATKGSDIEETALHTNLE 325 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+EIARQLRLRDL GLIV+DFIDM +N R VE +L+E++K DRARVQ+G IS FGLL Sbjct: 326 AADEIARQLRLRDLGGLIVIDFIDMGPNRNQREVENRLREAVKADRARVQIGRISRFGLL 385 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQR+RSS+ ES +VC C G G +RS S+ALSILR VEE ++ ++ Sbjct: 386 EMSRQRLRSSLGESHQEVCARCGGQGTVRSVESLALSILRIVEEEAMKEKTGTVLAQLPV 445 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +LLN+KR +I E E R V++ ++ + + +++ + Sbjct: 446 DVATFLLNEKRPSISEIEDRHRVAVVLIPNRTMETPHYDVQRLRSDDESTEDPSYRLASE 505 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + P + + +R + Sbjct: 506 EHPEPSPEWLEREAAPRSEEPVVQRVQPPSAPPPTAPVEESPKEEAPPPQRDAPEGSGAS 565 Query: 646 DAGVVSDVSSIQN-----VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D G+ Q + D + + +G G + + Sbjct: 566 DVGISGLTGLFQRLRGFFGREADNDSAGQEGPVGEKAPAASGRRGSDQKGATNGRRGGGS 625 Query: 701 EMESSNSSSDPIVKKTR 717 + + Sbjct: 626 NGGKGGRTRQKARPEDG 642 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 41/78 (52%), Positives = 55/78 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD E+ ++Q K NIY +TRVEPSL+AAFV YG Sbjct: 2 KRMLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLPF EI P YY+ Sbjct: 62 AERHGFLPFKEIAPSYYR 79 >gi|163751082|ref|ZP_02158313.1| ribonuclease E [Shewanella benthica KT99] gi|161329243|gb|EDQ00242.1| ribonuclease E [Shewanella benthica KT99] Length = 1052 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 209/647 (32%), Positives = 315/647 (48%), Gaps = 22/647 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I E S+ +A D ++ Sbjct: 7 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 66 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EVIK Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 67 LKEIAREYFPKGYSFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 126 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK L++P GMG+I+RTAG + E+ D + L Sbjct: 127 MPNNPRAGGISRRIEGDERTE-LKAALSELDIPNGMGLIVRTAGVGKDSAELAWDLKVLA 185 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W ++E ++ AP L+++E N+I RAIRD +D+ E+++ + + EAK + L+ Sbjct: 186 HHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVR 245 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P +A ++ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 246 PDFADRIKHYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 305 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++++++ Sbjct: 306 TKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHL 365 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 366 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 425 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V I V+ + + + + Sbjct: 426 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEIYVIPDPNMFTPDYRVSRHR 485 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + +K+ + Y+ E V E L + + Sbjct: 486 KDDQISEASYKLLEQPVSNLYEPRKLERVTAPEPALKGFTAPVKPPELKAKAATAPKTTE 545 Query: 629 RKRRRRRR--------RRRPATDHHDAGVVSDVSSIQNVIDDSF-------DMYMEPSDI 673 + + P + + S + N D + Sbjct: 546 EPGLIAKLFAAIGGLFKAEPKVEEPEKQSESSSQNRHNRRPDRKNDSRRNDNRRSRDDKE 605 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + E + D + S + S K TR + Sbjct: 606 QSGDKNERSRPSRNKRADSNEERSSRDRGDQGKRQSRHDSKPTRTRQ 652 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 54/75 (72%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG + Sbjct: 1 MLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|145299038|ref|YP_001141879.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida A449] gi|142851810|gb|ABO90131.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida A449] Length = 1020 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 212/685 (30%), Positives = 322/685 (47%), Gaps = 63/685 (9%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 10 QEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + ++ + I+EV++ Q ++VQI KEERG KGAA+TT++SLAG Y VL Sbjct: 70 LKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE GL VP GMG+I+RTAG ++ E++ D L+ Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLL 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 WD++ + + + AP L+++E N+I RAIRD +D+ EI++ + A+ ++L+ Sbjct: 189 NHWDSIHKASQDRTAPVLIHQESNVIVRAIRDYLRRDVGEILIDDPVIFERARAHIELVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ Y+ +F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++ + Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLEMSRQR+R S+ ES++ +C C+G G IR S+ALSILR +EE Sbjct: 369 DRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSILRLIEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ + DV YLLN+KRA+I E R V + ++ L + + + Sbjct: 429 EAMKDNTEQVHAQVPVDVAAYLLNEKRASIASLEQRNEVRLYIIPNQHLETPHYEVTRIR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------------------------- 601 + +++ ++ P Y V + E Sbjct: 489 QNEIPEAASYELKTEIAKPVYQPKQTQVIEREQPLLQGFVQAPQPAAPAAVAAPVAAPAP 548 Query: 602 ------------------------ALLPIPKSESLEDIQDNIVSEES-----TGVIRKRR 632 A K+ + + ++ R R Sbjct: 549 VAAKAEAGLFGKLFKAISGLFGSDAAPADVKAPAEKPAVQREARKDEAHRHQRDDTRGRG 608 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 +R RR + A + N + E +E Sbjct: 609 QRPRRDDNRNSRNTAEAGEKREAAANREGGESRNRRPRKEREPRQERETRTEVRSEQRVE 668 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTR 717 P E E + R Sbjct: 669 REPREPRQEREPRAPRPAREPRAPR 693 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIARNYF 78 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 6/149 (4%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 +E+ + + + + + S E Q Sbjct: 662 RSEQRVEREPREPRQEREPRAPRPAREPRAPREPRAEAVVEAVEIVETAVVSAEPQQ--- 718 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E+ V +R RR+ R++ D + V V + V+ D+ + E +D + Sbjct: 719 --EKEQKVAERRERRQLRKQIRADVPASDVAVVPTEAPVAVVADTVEQSDEQADGQRRSR 776 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNS 707 I + + + Sbjct: 777 RTPRTQRIEGQRRKRINEDARSQRDDEEP 805 >gi|320014731|gb|ADV98302.1| RNase E [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1216 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|270157798|ref|ZP_06186455.1| ribonuclease E [Legionella longbeachae D-4968] gi|289163932|ref|YP_003454070.1| Ribonuclease E [Legionella longbeachae NSW150] gi|269989823|gb|EEZ96077.1| ribonuclease E [Legionella longbeachae D-4968] gi|288857105|emb|CBJ10920.1| Ribonuclease E [Legionella longbeachae NSW150] Length = 646 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 204/649 (31%), Positives = 324/649 (49%), Gaps = 24/649 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + +L + + A+ D D+ I +++ I + E S+ + + Sbjct: 2 EKMLINAMQTEEVRVALVKDKYLFDLDIECPGEVKKKGNIYKATVTRREPSLDAIFVEYG 61 Query: 147 SN-------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 + E + + + I +I+ Q LLVQ+ KEERG+KGAA+TT+ Sbjct: 62 AKRQGFLPLKEIAPEYLSKSPDEFGDEKPPITSLIREGQELLVQVDKEERGSKGAALTTF 121 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 ++LAG Y VLMPN + ISR+I + L+E L +P MG+I+RTAG +++ Sbjct: 122 ITLAGCYLVLMPNNPRSGGISRRIEGEERDE-LRETLNALVLPEDMGLIIRTAGVGKSQE 180 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E++ D + L W ++++ +AP L+++EG++I R+IRD K ISEII+ + Y Sbjct: 181 ELQDDLDMLCNQWQSIKQAYNTELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYI 240 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +AK +++ + P + ++ Y P+F IE Q+++ +Q +V LPS G ++I++TEAL Sbjct: 241 KAKQYIERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEAL 300 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 VSIDVNS ++T IE TAL TN+EAA+EIARQLRLRDL GL+V+DFIDM KN R V Sbjct: 301 VSIDVNSAKATGGADIEATALNTNIEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREV 360 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 E +LKE+L+ DRAR+QVG IS FGLLEMSRQR+R S+ ES +VC C+G G +R+ S Sbjct: 361 ENRLKEALQADRARIQVGRISRFGLLEMSRQRLRLSLGESAQEVCPRCEGRGTVRNIQSH 420 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 LSI R +EE L+ I V ++ +++N+KR I + E R GVS+ ++ + Sbjct: 421 GLSITRLIEEEALKEKTAEIQVQLPPEMATFIMNEKRNYIRDIEKRHGVSVMIIANPYMH 480 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + I + + Q + E + + ++ + Sbjct: 481 LPQYSITRLKEDNVGKSKKPSYSLIQQPELQVSSSETDISSHDEPAVKSFVEHQPVKSSQ 540 Query: 620 VS-------------EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 S EST + + R + R T + S N S Sbjct: 541 TSFIKRLWTSLFGGHTESTVSATQSQSPRAQNRGHTHAKSSKSSSGDKKSTNRRRRSIGS 600 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + + + + P + SN +P +K+ Sbjct: 601 QQRANTNSGSSSSGMHRKKSNQPQQSNKAPSAR---NESNKKREPAIKE 646 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M MLI+A EE RV +++D + +LD E + + KGNIY A VTR EPSL A FV+ Sbjct: 1 MEK-MLINAMQTEEVRVALVKDKYLFDLDIECPGEVKKKGNIYKATVTRREPSLDAIFVE 59 Query: 61 YGGNRHGFLPFLEIHPDY 78 YG R GFLP EI P+Y Sbjct: 60 YGAKRQGFLPLKEIAPEY 77 >gi|116251507|ref|YP_767345.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115256155|emb|CAK07236.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 957 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 332/619 (53%), Positives = 414/619 (66%), Gaps = 2/619 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149 E+ A + + S+ E + + +++ +V+ +V Sbjct: 187 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGA 246 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL Sbjct: 247 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 306 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM Sbjct: 307 MPNTARGGGISRKITNPADRKRLKEIARLLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 366 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDISE+IVSGE+GYREAKDFMK+LM Sbjct: 367 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKMLM 426 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS Sbjct: 427 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRS 486 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH IEDTALQTNLEAA+E+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK Sbjct: 487 TREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 546 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR +EE Sbjct: 547 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEE 606 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 YLL+ T HNI V T D+ LYLLN KR TI++YE+RFGV+I + + + F I++G Sbjct: 607 YLLKNTTHNITVRTTPDIALYLLNHKRQTIIDYESRFGVAIIIDADGSVGAQHFAIDRGE 666 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV+ V + D +I +E + + ++ + +E R Sbjct: 667 PVENPVKIETLFNFAAIPEDDDDDIVIEVDEEEDEELEEKPAVSERPVAARAEGEADGNR 726 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 KR+RRRRRR + + + ++ D + + Sbjct: 727 KRKRRRRRRGRNGNAEQPLSATGEAGDEDEDGDDEGGEGDENTEATPETRAESEESQRRK 786 Query: 690 YDVSIPPVSTPEMESSNSS 708 S Sbjct: 787 RRRRGKRGGRRNRAEDGSE 805 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 133/279 (47%), Gaps = 4/279 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ + +DV H + D S Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLSK 116 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ + E E + ++ V + K R+ + V + Sbjct: 117 QDQPDVGIVPAEAPETAAVTEETAAVEAAASPEATEEAPAKKARPRRSRKKVVEPVAETT 176 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + A + G M + ++IS + R + + Sbjct: 177 ATEDAVPTDVEAEGASSVDNEDDGSTGGAMAAMVETDSISEDVDTSKRRHDDDDDDDDHG 236 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + ++R R+ + ++ Sbjct: 237 EEEVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQ 275 Score = 46.9 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 4/158 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + L + D+ EA+ +E ++ Q + + ES Sbjct: 799 RAEDGSELTAGEAGEDNGGDEDEGDEVSNDGAPSEAVAVEAIAEQADEGQAAMAAVESAP 858 Query: 627 --VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R R RR V++ + + + + + + Sbjct: 859 VITEEVKPARARGRRKPAAAPVEEPVAETTPVVEAEPELVEASADLETSVQEE-AKPVRA 917 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N S P V + +E+ D KK WW+RR Sbjct: 918 NRESNISSSEPTVKSTRVENGEGD-DGKPKKAGWWQRR 954 >gi|292899166|ref|YP_003538535.1| ribonuclease E [Erwinia amylovora ATCC 49946] gi|291199014|emb|CBJ46125.1| ribonuclease E [Erwinia amylovora ATCC 49946] Length = 1179 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 309/629 (49%), Gaps = 9/629 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSHYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + +A + E + ++ + + E + Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPAPHEVAVVPAV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + + PA+ V VS ++ + +P + E Sbjct: 551 TKAAVKTPA-PASPAQPGLVSRIVSGLKKLFAAPEKPAQQPPQPAVEEKSAEASAPRGER 609 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + N +D + R Sbjct: 610 RNNRRQNNRRDRNGDRNERNDRNERNDRN 638 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|300022369|ref|YP_003754980.1| ribonuclease, Rne/Rng family [Hyphomicrobium denitrificans ATCC 51888] gi|299524190|gb|ADJ22659.1| ribonuclease, Rne/Rng family [Hyphomicrobium denitrificans ATCC 51888] Length = 1025 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 281/630 (44%), Positives = 383/630 (60%), Gaps = 17/630 (2%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + + S +A+ D A + + V Q+ ++ + Sbjct: 213 EPPMAASEVARDDEAAPSVLANDEEQPEHEFSDQPSVEDDYAGHQDALNDNGSVEHEHHD 272 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 + P ++ R Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAGRY Sbjct: 273 EGSQPEFREGPRSRQRRRPRSYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRY 332 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 +VLMPNT++G ISRKITNP DR+ LK IA+ LEVP GMG+I+RTAGA+RTK EIKRDFE Sbjct: 333 TVLMPNTARGGGISRKITNPQDRRRLKSIAQELEVPEGMGLIIRTAGAARTKQEIKRDFE 392 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YL+RLW++VR+L L S AP LVYEEG+LIKR+IRDLY KD+ EI+V+G+ G++EA DFMK Sbjct: 393 YLLRLWESVRDLTLQSTAPSLVYEEGDLIKRSIRDLYNKDVEEIVVAGDAGHQEAADFMK 452 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 +LMPS+A+ V Y +P P+F R G+E QL+++ Q +VTL S GY++INQTEALV+IDVNS Sbjct: 453 MLMPSHAKNVVAYREPTPLFTRYGVERQLNAMFQPQVTLRSGGYIVINQTEALVAIDVNS 512 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 G+STRE IE+TAL TNLEAA+EIARQL+LRDLAGLIV+DFIDMEEK+NNR+VE++LK++ Sbjct: 513 GKSTREFSIEETALATNLEAADEIARQLKLRDLAGLIVIDFIDMEEKRNNRAVERRLKDA 572 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 L+ DRAR+Q+G IS+FGL+EMSRQR+R+ VLE +T C +C+G G IRS S+AL++LR Sbjct: 573 LRFDRARIQLGRISHFGLMEMSRQRLRTGVLEGSTSQCAHCQGTGIIRSTESIALAVLRG 632 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 +E+ + ++ T S V LY+LN KRA + + E R G S+ V+ + F +E Sbjct: 633 IEDAITAGANGPLVATTTSAVALYILNSKRAYVADMEVRHGYSVTVLGSDRVQGANFTVE 692 Query: 567 KGSPVQALVN-------------TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + + + D E DE ++ Sbjct: 693 RSAASALPIRRTERAAVNMDWGFDAEGDAPSYAPSDMDSANEAGDADEDVIDRETRNGSR 752 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP--- 670 D ++N R R R R ++ D Q DD+ + EP Sbjct: 753 DGEENGQRRSRRRRRRGRGGRDRGDDRGEEYSLEQREDDSERDQPATDDAHSDFDEPTAD 812 Query: 671 -SDITNHNLLENGAHGFTENYDVSIPPVST 699 + + +++GAH N S + Sbjct: 813 IEGLGDQPSVDDGAHAEASNGQGSDEKPNK 842 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 100/159 (62%), Gaps = 1/159 (0%) Query: 1 MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+N KMLIDA+H EETRVVV R+ RVEE DFES +K ++GNIYLAKVTRVEPSLQAAFV Sbjct: 1 MSNTKMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFV 60 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 DYGGNRHGFL F E+HPDYYQIP +DRQALL E A+ + EA AD Sbjct: 61 DYGGNRHGFLAFNEVHPDYYQIPVADRQALLDEEAAAEAELEAAADRRAEALARRNVRSH 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 + + + + S + +V V+ + E Sbjct: 121 SDSDTGPESPGDDFGDISPADTSLEVSHIVDVEEDEHIE 159 >gi|293603990|ref|ZP_06686403.1| ribonuclease E [Achromobacter piechaudii ATCC 43553] gi|292817594|gb|EFF76662.1| ribonuclease E [Achromobacter piechaudii ATCC 43553] Length = 1032 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 193/580 (33%), Positives = 291/580 (50%), Gaps = 47/580 (8%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR++ ++ L++ LE+P GM +I RTAG R E++ D YL++L Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQL 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A ++ AP L+Y E +L+ RAIRD + +I EI++ ++ +A FM ++MP Sbjct: 190 WTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALVS+DVNS RSTR Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARSTR 309 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL+TN EAA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L DR Sbjct: 310 GADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGL+E+SRQR+R ++ E + C C G G IR S AL +LR ++E Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV YLLN+KRA I + EAR V++ ++ L +IE+ Sbjct: 430 MKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPHHHIERLRHD 489 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP------------------------ 607 + +AP+ + + + P Sbjct: 490 DPRLEELKTSFDLVEAPATNAPWQPRESEIKARPEALVKGITPSQPAPVSTPAAPVAAPA 549 Query: 608 ---------------------KSESLEDIQDNIVSEESTGVIRKRRRRRR-RRRPATDHH 645 SE+ + + + R + Sbjct: 550 APAAAGGLGGLFKRLVGWLTGGSEAAKPAPTAQEDSAKRAASGRGKGRAGHDGQERRGER 609 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + + + N G Sbjct: 610 HGSDRNRNNRRGESRGEGAEGSEGNRHHARGNRRNEGERQ 649 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110 >gi|71899933|ref|ZP_00682080.1| Ribonuclease E and G [Xylella fastidiosa Ann-1] gi|71730296|gb|EAO32380.1| Ribonuclease E and G [Xylella fastidiosa Ann-1] Length = 1132 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 211/612 (34%), Positives = 324/612 (52%), Gaps = 16/612 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D + D+ I ++ + I E S+ +A D ++ Sbjct: 10 QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L +P MGVI+RTAG R E++ D ++L+ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ AP L+Y+E LI RA+RD + DI EI+V E+ Y++A +FM+ +MP Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHEFMRHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y+D P+F R IE Q++ ++ V LPS G ++++QTEAL +IDVNS R+T Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM K+ R +E +L+ LK D Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+ IS FGLLEMSRQR+R S+ ES+ VC YC G G +RS S++LSI+R VEE+ Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V T ++ YLLN+KR I E E R I ++ +L + + + Sbjct: 429 AMKENTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629 + TG + + ++ L IP + +++ I + Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSITPPQLAPTQENIPTI 544 Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R P + + + Q + S ++ + N E Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERNR 604 Query: 684 HGFTENYDVSIP 695 + P Sbjct: 605 RDGQIATSNTQP 616 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 TDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGN 110 >gi|94311376|ref|YP_584586.1| RNAse E [Cupriavidus metallidurans CH34] gi|93355228|gb|ABF09317.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Cupriavidus metallidurans CH34] Length = 1037 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 199/542 (36%), Positives = 293/542 (54%), Gaps = 5/542 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRAAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A ++ AP L+Y E +L+ RAIRD + DI EI++ ++ Y +A+ FM ++MP Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+T+ Sbjct: 251 MSRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + ++A + + + + + + V R R Sbjct: 491 PRLEESTASYRMAEAAAKELEADTSYSSRKKEETRPRQEAAVKGITPDAPAPVSVPRPER 550 Query: 633 RR 634 R Sbjct: 551 VR 552 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGN 110 >gi|292487947|ref|YP_003530824.1| ribonuclease, Rne/Rng family protein [Erwinia amylovora CFBP1430] gi|291553371|emb|CBA20416.1| ribonuclease, Rne/Rng family protein [Erwinia amylovora CFBP1430] Length = 1166 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 198/615 (32%), Positives = 305/615 (49%), Gaps = 9/615 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----DVKGGSPEDVPKKFK 165 D+ I + ++ A I E S+ +A D + Sbjct: 13 DLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEISREYFPSHYNAH 72 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMPN + ISR+I Sbjct: 73 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 132 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LKE LE+P GMG+I+RTAG ++ ++ D + ++ W+ +++ A + AP Sbjct: 133 DDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKHWEAIKKAADSRPAP 191 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHP 344 L+++E N+I RA RD +DI EI++ K A+ + L P ++ ++ Y P Sbjct: 192 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP 251 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+TR IE+TA TNL Sbjct: 252 LFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARATRGGDIEETAFNTNL 311 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++DRAR+Q+ IS FGL Sbjct: 312 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 371 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 LEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE L+ + Sbjct: 372 LEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEEALKENTKEVHAIVP 431 Query: 525 SDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 V YLLN+KR + E R GV +V + + + + + + + Sbjct: 432 VQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVRSGEETQTLSYHLPK 491 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 +A + E + ++ + + E + + + PA+ Sbjct: 492 LHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPAPHEVAVVPAVTKAAVKTPA-PASP 550 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 V VS ++ + +P + E + Sbjct: 551 AQPGLVSRIVSGLKKLFAAPEKPAQQPPQPAVEEKSAEASAPRGERRNNRRQNNRRDRNG 610 Query: 704 SSNSSSDPIVKKTRW 718 N +D + R Sbjct: 611 DRNERNDRNERNDRN 625 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 35/64 (54%), Positives = 45/64 (70%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG RHGFLP EI Sbjct: 2 RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIS 61 Query: 76 PDYY 79 +Y+ Sbjct: 62 REYF 65 >gi|190891327|ref|YP_001977869.1| ribonuclease [Rhizobium etli CIAT 652] gi|190696606|gb|ACE90691.1| probable ribonuclease protein [Rhizobium etli CIAT 652] Length = 960 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 322/535 (60%), Positives = 390/535 (72%), Gaps = 2/535 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149 E+ A + + S+ E + + +++ +V+ +V Sbjct: 191 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDIDTSKRRHDDDDDDDDHGEEEVIESVGA 250 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL Sbjct: 251 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 310 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM Sbjct: 311 MPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 370 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LM Sbjct: 371 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLM 430 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS Sbjct: 431 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 490 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK Sbjct: 491 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 550 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G G++RSQSSVAL +LR +EE Sbjct: 551 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCAGTGHVRSQSSVALHVLRGIEE 610 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 YLL+ T HNI V T D+ LYLLN KR TIV+YE+RFGV+I + + + F I++G Sbjct: 611 YLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYESRFGVAIVIDADGSVGAQHFAIDRGE 670 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 V+ V + D +I ++ + + + + SE Sbjct: 671 AVENPVKIETLFNFAAIPEDEDDDIIIEADEDEDEELEEKPAAAERATTARSEGE 725 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTHGDVTIPNDH 118 YGGNRHGFL F EIHPDYYQIP +DRQALL + + + + D++ + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP 120 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 + V A +E +A D V V +P + + + Sbjct: 121 DVGIVPAEAPAPVAVADEPAPAAIADAVEAVPATAEEAPAKKARPRRSRK 170 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 41/156 (26%), Gaps = 1/156 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + L + + ++ ++ + + Sbjct: 803 RAEDGSELTAGEDSGSDEDEGDDVSNDVAPAEAAIVETVAEQAGEDQAAAAAVEGAAVVT 862 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 K R R RR+ A +A V ++ I+ + Sbjct: 863 EDVKPARGRGRRKAAASPVEAPVAEAEAAPAAEIEPEVAEASADLQTPAQEQTKPVRANR 922 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N S P V + E+ S D KK WW+RR Sbjct: 923 ESNITSSEPTVKSTRSENGESD-DGKPKKAGWWQRR 957 >gi|206577486|ref|YP_002239296.1| ribonuclease E [Klebsiella pneumoniae 342] gi|206566544|gb|ACI08320.1| ribonuclease E [Klebsiella pneumoniae 342] Length = 1075 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 200/606 (33%), Positives = 307/606 (50%), Gaps = 14/606 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KRA + E+R G V + +V E+ + + + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + E + P + + D + EE Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPAPMLEEPVAAP 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 A G++S S I S +P ++ E E Sbjct: 551 AVAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGTEEAKPVEVPVEKKAEEKPERQQE 605 Query: 689 NYDVSI 694 Sbjct: 606 RRKPRS 611 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|15602856|ref|NP_245928.1| Rne [Pasteurella multocida subsp. multocida str. Pm70] gi|12721318|gb|AAK03075.1| Rne [Pasteurella multocida subsp. multocida str. Pm70] Length = 1004 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 202/630 (32%), Positives = 313/630 (49%), Gaps = 14/630 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPDDYVYQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ LEVP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K Y +AK +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FIHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE ++++++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ YLLN+KR I E R V + VV + F + + Sbjct: 431 LKENTKQVHTLVPVEIASYLLNEKRRAIHSIEKRHDVDVIVVPNEGMETPHFGVFRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSY--------DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + + + Q + + + I E Sbjct: 491 EEVHELSYNLVKLHQEKDEHFVPEESLVSRNIETAALTSENVLESAAVSMAIPAPAPVPE 550 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R + D VV + S + E + Sbjct: 551 KKVENKPSLLTRILAKLKAIFADKPVVEEKSKGNRPKSNRNRRQQERRNQRRSRAENVER 610 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 T+ D + V P E + + Sbjct: 611 DSNTKRQDEVVEEVIRPRSERNTKRNRKAN 640 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|290510794|ref|ZP_06550164.1| ribonuclease E [Klebsiella sp. 1_1_55] gi|289777510|gb|EFD85508.1| ribonuclease E [Klebsiella sp. 1_1_55] Length = 1076 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 200/606 (33%), Positives = 307/606 (50%), Gaps = 14/606 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KRA + E+R G V + +V E+ + + + Sbjct: 428 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + E + P + + D + EE Sbjct: 488 KGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPAPMLEEPVAAP 547 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 A G++S S I S +P ++ E E Sbjct: 548 AVAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGTEEAKPVEVPVEKKAEEKPERQQE 602 Query: 689 NYDVSI 694 Sbjct: 603 RRKPRS 608 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|124265849|ref|YP_001019853.1| ribonuclease E [Methylibium petroleiphilum PM1] gi|124258624|gb|ABM93618.1| ribonuclease E [Methylibium petroleiphilum PM1] Length = 998 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 194/535 (36%), Positives = 285/535 (53%), Gaps = 5/535 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QSEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + R IQ+VI N LLVQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQFFKEGVTVRDAKIQDVISNGTELLVQVEKEERGNKGAALTTFVSLAGRYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D Y+++ Sbjct: 130 PNNPRGGGVSRRIEGEDREE-LKENLDQLEYPKGMSLIARTAGIGRSAPELQWDLNYMLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A L+Y+E +L+ RAIRD + DI EI++ + Y +A+ FM +MP Sbjct: 189 LWSAIDGAAKAGKGAFLIYQESSLVIRAIRDYFHADIGEILIDTDDIYEQAQQFMNHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 A V++Y+D P+F R IE Q+++ V LPS G ++I+ TEALVS+DVNS RST Sbjct: 249 ESASRVKRYKDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSVDVNSARST 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA +TNLEAA+EIARQ+RLRDL GLIVVDFIDMEE KN R VE +L+++L+ D Sbjct: 309 RGSDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVETRLRDALRTD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ +IS FGLLE+SRQR+R ++ E + C C G G+IR S AL ILR ++E Sbjct: 369 RARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + V +V +LLN+KR I + E R ++ +V L + +E+ Sbjct: 429 SMKENTAAVHVQVPVEVTSFLLNEKRTEITKIELRQRTTVLLVPNKHLETPNYKLERLRH 488 Query: 571 VQALVNTGHKVGSDSQAPSYD----KNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + + P + + + + E ++ + + Sbjct: 489 DDPRLENLQASYTMIEEPDDEVGITRREKAKAKQEPVIKGVLPDLPAPVAAPKPE 543 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 67/109 (61%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQSEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI +++ + R A +++ T+ + G+ Sbjct: 62 EDRHGFLPFKEISKQFFKEGVTVRDAKIQDVISNGTELLVQVEKEERGN 110 >gi|288936151|ref|YP_003440210.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22] gi|288890860|gb|ADC59178.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22] Length = 1079 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 200/606 (33%), Positives = 307/606 (50%), Gaps = 14/606 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KRA + E+R G V + +V E+ + + + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + E + P + + D + EE Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPGDEEPAERKRPEQPALAAFVMPDAPPAPMLEEPVAAP 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 A G++S S I S +P ++ E E Sbjct: 551 AVAAA----PVAAAAPAQPGLLSRFFSALKNIF-SGTEEAKPVEVPVEKKAEEKPERQQE 605 Query: 689 NYDVSI 694 Sbjct: 606 RRKPRS 611 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|261378097|ref|ZP_05982670.1| ribonuclease E [Neisseria cinerea ATCC 14685] gi|269145548|gb|EEZ71966.1| ribonuclease E [Neisseria cinerea ATCC 14685] Length = 913 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 205/650 (31%), Positives = 313/650 (48%), Gaps = 29/650 (4%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MP Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSE----- 622 + ++ + E + + + Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSEKAKAARPEPAVKGVRHTQPAPMVAEKKQNSWW 548 Query: 623 ----------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 E+ V +R R + S V + + Sbjct: 549 DSFKAWLKRIFGSSTTEAQPVAETSGKRTAANRNNSRRQTPRRSKREGSKVEVREVAGKA 608 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +P+ N + + + E++ + + V T Sbjct: 609 DEQPARNAKAETHNNDGRRRNGRNNRAAERANEAEIQEHINQAPAPVADT 658 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|261822070|ref|YP_003260176.1| ribonuclease E [Pectobacterium wasabiae WPP163] gi|261606083|gb|ACX88569.1| ribonuclease, Rne/Rng family [Pectobacterium wasabiae WPP163] Length = 1121 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 201/665 (30%), Positives = 309/665 (46%), Gaps = 58/665 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD +DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKILELAKEHISALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++S+++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQTPHYSVVRVR 490 Query: 570 PVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPI---------------------- 606 + + + ++ + + + + P Sbjct: 491 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETTPPVAKATP 550 Query: 607 ---------------------------PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + D D +EE +R RR RR Sbjct: 551 AVVKAAEETQPGLISRFFGALKSVFASEPAVKAADNVDEKKAEEEKSTEGQRSERRNSRR 610 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + D G + + N + + + + + T Sbjct: 611 QGNNRRDRGSRDNRDNRDNRDNRDNRDNRDNREQRDDQRRNKRQNDETVTETRVAENAEK 670 Query: 700 PEMES 704 E Sbjct: 671 AGSEE 675 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|159044883|ref|YP_001533677.1| ribonuclease [Dinoroseobacter shibae DFL 12] gi|157912643|gb|ABV94076.1| ribonuclease [Dinoroseobacter shibae DFL 12] Length = 1026 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 270/621 (43%), Positives = 366/621 (58%), Gaps = 2/621 (0%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 D L+ E+ A D + + + + EV+ A + ++ Sbjct: 272 EDGPILVAEAAGAGPDGDKETAEKPKRRRSRRRKKTDVEVSEEATDETAAADSDAADQDD 331 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 + ++ ++ +R+Y IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLA Sbjct: 332 GIEDVADEDVAEEIRRPRQRRERRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLA 391 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 GRY VLMPNT++G ISRKITN VDRK LKEIA +EVP G G+I+RTAGA RTK EIKR Sbjct: 392 GRYCVLMPNTARGGGISRKITNAVDRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKR 451 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 D++YL RLW+ +R+L L S+AP +YEEGNLIKR+IRDLY +DI E++V GE+GYR AKD Sbjct: 452 DYDYLKRLWEQIRDLTLKSIAPAPIYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKD 511 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 FMK+LMPS+A+ V+ Y + P+F R +E L + V L S GY++I TEALV+ID Sbjct: 512 FMKMLMPSHAKNVKLYNENLPLFARYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAID 571 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNSGR+T+E IE+TAL+TNLEAAEE+ARQ+RLRDLAGLIV+DFIDMEE++NN +VEK+L Sbjct: 572 VNSGRATKEGSIEETALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRL 631 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 K+ LK DRAR+QVG IS FGLLEMSRQR+R +LE TT+ C +C G G IRS +S+ALSI Sbjct: 632 KDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSI 691 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 +R++EE ++ ++V +V+ YL N+KR I E R+G+S+ + EL+ F Sbjct: 692 VRALEEEGMRRRVREVLVKAPVNVINYLFNEKREHIALIEGRYGLSVRLEASNELSGADF 751 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+K V D+ DE ++ + Sbjct: 752 TIDKFKTATRKVVELDAPVVSIDTSGVDEAEIVEEPDEEEADTETEAETAATEETSEEQA 811 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 R+RRR RR T++ ++ + DS D + + Sbjct: 812 PRKRRRRRRR--SRRGGGTENGESNGDGSDEAQSAADADSSDQADISEEAESSQPAVEAE 869 Query: 684 HGFTENYDVSIPPVSTPEMES 704 + E Sbjct: 870 AEEAPKPKRRRRRRRKSDAEE 890 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 74/134 (55%), Positives = 87/134 (64%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLIDA+H EETRVVV+ +VEE DFES +K+Q+ GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ALL E T + + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLAEEMAFATADAEEDEVKPKKRRSRRRKKVE 120 Query: 121 EEVAPIANFSQETE 134 A + ++ Sbjct: 121 TSDEDAAEVTADSN 134 >gi|22125643|ref|NP_669066.1| ribonuclease E [Yersinia pestis KIM 10] gi|108812200|ref|YP_647967.1| ribonuclease E [Yersinia pestis Nepal516] gi|145599138|ref|YP_001163214.1| ribonuclease E [Yersinia pestis Pestoides F] gi|167427020|ref|ZP_02318773.1| ribonuclease E [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229902525|ref|ZP_04517644.1| RNase E [Yersinia pestis Nepal516] gi|270490298|ref|ZP_06207372.1| ribonuclease E [Yersinia pestis KIM D27] gi|21958554|gb|AAM85317.1|AE013778_3 RNase E [Yersinia pestis KIM 10] gi|108775848|gb|ABG18367.1| RNAse E [Yersinia pestis Nepal516] gi|145210834|gb|ABP40241.1| RNAse E [Yersinia pestis Pestoides F] gi|167053999|gb|EDR63827.1| ribonuclease E [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680571|gb|EEO76668.1| RNase E [Yersinia pestis Nepal516] gi|270338802|gb|EFA49579.1| ribonuclease E [Yersinia pestis KIM D27] Length = 1216 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|92117367|ref|YP_577096.1| ribonuclease [Nitrobacter hamburgensis X14] gi|91800261|gb|ABE62636.1| RNAse E [Nitrobacter hamburgensis X14] Length = 1039 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 288/568 (50%), Positives = 380/568 (66%), Gaps = 5/568 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 A EA + H + + + E++ + V S D Sbjct: 275 DADHALEAHDEAHDHESGDHNDHNGQPHEVEFHDEEAHAEDDDDAEEDEQVESVGGDDAL 334 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+ Sbjct: 335 EEVPERAYRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 394 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKIT+ DR LK++ + L+VP GMGVILRTAGASRTK EIKRDFEYL+R+W+ Sbjct: 395 RGGGISRKITSAQDRSRLKDVVQDLDVPEGMGVILRTAGASRTKPEIKRDFEYLIRMWET 454 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFMK+LMP+ R Sbjct: 455 VRDMTLQSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEGGYQEARDFMKMLMPTNVR 514 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+QY D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGRSTREH Sbjct: 515 AVKQYRDCQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 574 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 I+DTAL+TNLEAAEE++RQLRLRDLAGLIV+DFIDM+EK++NR+VE+KL + L+ DRAR+ Sbjct: 575 IKDTALKTNLEAAEEVSRQLRLRDLAGLIVIDFIDMDEKRSNRAVERKLSDCLRHDRARI 634 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS+FGLLEMSRQRIR+S+LES+T+ C +C G+G++RS SVAL +LRS+EE L++ Sbjct: 635 QVGRISHFGLLEMSRQRIRASMLESSTEPCQHCGGSGHVRSVPSVALQLLRSLEEVLMKG 694 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573 H+++V T ++V LY+LNQKR + + E F V ++VV + + F I++G V Sbjct: 695 ATHDLVVRTRTNVALYVLNQKRGHLRDLEHSFKVGLSVVSDPSITGQQSFIIDRGEQVHT 754 Query: 574 LVNTGHKVGSDSQ--APSYDKNIECVW--QDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 L + + P ++ E E + +ES D Q +E R Sbjct: 755 LEAAKALLAAQLAASPPQAEEAHEDEQPLDIEVEIETGDTESRPDEQAGGEAEGDGRKRR 814 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +RR RR R A D A S+Q Sbjct: 815 RRRPRRERSGEARDDQAAHGDEGSDSVQ 842 Score = 164 bits (415), Expect = 4e-38, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 1 MANK---MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAA 57 M+NK MLIDA+H EETRVVV+R NRVEE DFES +KQ++GNIYLAKVTRVEPSLQAA Sbjct: 1 MSNKPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAA 60 Query: 58 FVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND 117 F++YGGNRHGFL F EIHPDYYQIP +DR+AL++ A ++E ++D + + + Sbjct: 61 FIEYGGNRHGFLAFSEIHPDYYQIPVADREALIEADERAHREAEEESEDRSSRRRSRHRN 120 Query: 118 HSLEEVAPIANFSQ-ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176 + + E + A+ S D + + + Sbjct: 121 SRRRDHGERVQSAIVEDAAQQDAGADASPFSPAHDDHPHEDDADHDHPHEFDHPHDDDAD 180 Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 ++ G+ + + + + P+ S ++ Sbjct: 181 HDHPHEHAHNDDIGHSQPYGSDHHDIDADH----PHGSHDIAFAQNPDQD 226 >gi|325921640|ref|ZP_08183477.1| RNAse E [Xanthomonas gardneri ATCC 19865] gi|325547874|gb|EGD18891.1| RNAse E [Xanthomonas gardneri ATCC 19865] Length = 1243 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 210/598 (35%), Positives = 314/598 (52%), Gaps = 9/598 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 7 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD DI EI+V + Y +A++FM+ +MP Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFMQQVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQNALKYD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 485 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++G + + P S++ Q V EE+ + Sbjct: 486 NELGEDSGKPSYQRGTPRKLPVHAL-TKAQLNIPAAPAVTSIKPSQPAPVREEAPAPVAA 544 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 GVV + I ++ + P + E Sbjct: 545 APAPAPVVALPLPAPVTGVVGWLKRIFGGVEP---VAPVPESTQRPRQSDPARGNRNE 599 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 62/107 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 61 RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107 >gi|71282108|ref|YP_269009.1| ribonuclease E [Colwellia psychrerythraea 34H] gi|71147848|gb|AAZ28321.1| ribonuclease E [Colwellia psychrerythraea 34H] Length = 1004 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 200/641 (31%), Positives = 320/641 (49%), Gaps = 14/641 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQKLYDLDIESPGHEQKKSNIYKAKITRIEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERG KGAA+TT++SLAG Y VL Sbjct: 70 MKEIAREYFPKGYTFQGRPNIKEVLHEGQEVIVQIDKEERGQKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK L++P GMG+I+RTAG + E+K D L+ Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKASLSKLDLPKGMGLIVRTAGVGKDYEELKWDLSVLL 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + + + AP L+++E NLI RAIRD +DI E+++ K + K ++++ Sbjct: 189 HHWQAISDAGKSRPAPFLIHQETNLILRAIRDYLRRDIGEVLIDRPKTFESVKKHIEVVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + ++ Y P+F IE Q+++ Q EV LPS G ++I+ TEA+ SID+NS R+ Sbjct: 249 PDFLNKIKLYTSDVPLFTHYQIETQIETAFQREVRLPSGGSIVIDPTEAMTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TA TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE ++++S+ + Sbjct: 309 TKGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDSVHQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLEMSRQR+R S+ E++ VC C G G++R S+ALSILR +EE Sbjct: 369 DRARIQLGKISRFGLLEMSRQRLRPSIGETSQGVCPRCSGTGHVRGVESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ ++ V YLLN+KR +++ E V + ++ + + + + Sbjct: 429 EAIKENTLHVQAQVPVPVATYLLNEKRRSVMHVEKHHNVRVLIIPNPHMDTPQYEVLRVK 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDK----NIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + +V +++ K + +DE L+ S + D + Sbjct: 489 NDETIVEASYELPVKKAELEEAKMPKFDKVAAKRDEPLIQGMTSPTRAPKADESPVKAEI 548 Query: 626 GVIRKRRRRRRR----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + K+ + + V +VS+ Q + + N+ Sbjct: 549 TTVSKQTKPSGFFGWLKSLFVAEEVVEEVKEVSTTQQPKKPQERRGNQQAKRRNNRGNNR 608 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + P E + S D V K + R+ Sbjct: 609 NRNDRNGEDATNRPIQKENEARDTRPSRDEEVNKPKRQPRK 649 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 56/77 (72%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY AK+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQKLYDLDIESPGHEQKKSNIYKAKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 62 ADRHGFLPMKEIAREYF 78 >gi|309781164|ref|ZP_07675901.1| ribonuclease E [Ralstonia sp. 5_7_47FAA] gi|308919985|gb|EFP65645.1| ribonuclease E [Ralstonia sp. 5_7_47FAA] Length = 1006 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 193/469 (41%), Positives = 281/469 (59%), Gaps = 1/469 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 85 RNARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E LEVP GM +I RTAG R+ E++ D YLM+LW V A+++ AP Sbjct: 145 EDRQE-LRETMAQLEVPDGMSIIARTAGIGRSAEELQWDLNYLMQLWKAVDGAAVDNKAP 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP V++Y D P+ Sbjct: 204 LLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDNMNRVKKYRDDVPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q++S + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA +TNLE Sbjct: 264 FSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAIDVNSARATKGADIEETAARTNLE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRARVQ+G IS FGL+ Sbjct: 324 AADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRARVQMGKISRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R S+ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQVPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 +V +LLN+KR I E RF V++ ++ L + +E+ ++ + Sbjct: 444 EVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDDPRLDEDKASYKMA 503 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + + + + P+ E+ + +R R Sbjct: 504 EEAAKELEADTAYSTRKEAAKPRQEAAVKGITPDQPAPVSVPRAERPAR 552 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKDGVDVRNARIQDALREGQELIVQVEKEERGN 110 >gi|323136614|ref|ZP_08071695.1| ribonuclease, Rne/Rng family [Methylocystis sp. ATCC 49242] gi|322397931|gb|EFY00452.1| ribonuclease, Rne/Rng family [Methylocystis sp. ATCC 49242] Length = 1016 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 297/639 (46%), Positives = 383/639 (59%), Gaps = 14/639 (2%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 ++ QA E + D A + + + E A+ + + + Sbjct: 241 TAETQAPDHELKAFRQDERDEARERAREESAEEGPEGVAETQARADHPADEDHDDEEHDE 300 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 D V ++ + +RQY IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSL Sbjct: 301 EDDVEHIGGDAMDEAPYRAARSRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSL 360 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRYSVLMPNT++G ISRKIT+ DRK LKEI LEVP GMGVILRTAGA+RTK E+K Sbjct: 361 AGRYSVLMPNTARGGGISRKITDGADRKRLKEIVHDLEVPEGMGVILRTAGATRTKAEVK 420 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 RDFEYL+RLW++VREL L S AP LVYEEG+LIKRAIRDLY +D+ E++VSG++ YREAK Sbjct: 421 RDFEYLLRLWESVRELTLRSSAPTLVYEEGSLIKRAIRDLYGRDVEEVVVSGDEAYREAK 480 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 DFM++LMPS+A+ V+Q+ + PIF SG+E QLD++ VTL S GY++INQTEALV+I Sbjct: 481 DFMRMLMPSHAKNVKQHREAFPIFAESGVEAQLDAMFSNHVTLKSGGYLVINQTEALVAI 540 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSGRSTREH IEDTAL+TNLEAA+E+ARQLRLRDLAGLIVVDFIDMEE +NNR+VE++ Sbjct: 541 DVNSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEESRNNRAVERR 600 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 LK+ LK DRAR+QVG IS+FGLLEMSRQRIR+ V+E +T C +C GAG++RS +SVAL Sbjct: 601 LKDGLKNDRARIQVGRISHFGLLEMSRQRIRAGVVEGSTVQCPHCLGAGHVRSTASVALH 660 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 +LR +EE L++ AH++ + T + V LY+LNQKRA + E E+RFGV I V L Sbjct: 661 VLRVLEEALIKSAAHDVTLRTRAVVALYILNQKRAHLHELESRFGVHITVAADDTLTGAT 720 Query: 563 F-YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + +E+G + P+ + L E ++ Sbjct: 721 YHALERGELASGP-----------RLPAAPAPLRVDSLRAEPLEEEPVEEEALVETGEEG 769 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E+ RR R R + E + + Sbjct: 770 EDEIARAESRREERVARSRFNGEEGEEGAQRSRRRRRRRGRGGGQAGEQMPLGAEQPSDE 829 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 G P PE P RW + Sbjct: 830 GLAFMAAIEGAPAPREPRPERAGR--GRGPERGPGRWRR 866 Score = 203 bits (515), Expect = 9e-50, Method: Composition-based stats. Identities = 84/136 (61%), Positives = 93/136 (68%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASH EETRVVVLR NRV+E DFE+ KK ++GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDASHPEETRVVVLRGNRVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+E + A E HG Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRQALLEEESRAHRQDEEEEHHRPHGRGRRSRRRQH 120 Query: 121 EEVAPIANFSQETEEE 136 E A+ + E Sbjct: 121 EGAEKRASADEALSSE 136 >gi|262366258|gb|ACY62815.1| ribonuclease E [Yersinia pestis D182038] Length = 1218 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESSGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 545 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 546 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 605 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 606 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 636 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESSGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|237731017|ref|ZP_04561498.1| ribonuclease E [Citrobacter sp. 30_2] gi|226906556|gb|EEH92474.1| ribonuclease E [Citrobacter sp. 30_2] Length = 1087 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 190/535 (35%), Positives = 293/535 (54%), Gaps = 9/535 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + + +A + E V + + P + ++ D+ +E Sbjct: 491 KGEETPTLSYLLPKLHEEAMALPTEEEYVERKQPEQPALATFAMPDVPPAPALQE 545 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|17545759|ref|NP_519161.1| ribonuclease E protein [Ralstonia solanacearum GMI1000] gi|17428053|emb|CAD14742.1| probable ribonuclease e (rnase e) protein [Ralstonia solanacearum GMI1000] Length = 1014 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 213/685 (31%), Positives = 316/685 (46%), Gaps = 65/685 (9%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V A+ + AP L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 KAVDGAAVENKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALV++DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 -------------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK----- 608 +T + ++ P + ++ + ++ Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPAPVSVPRSERP 550 Query: 609 -------------------------------SESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + E + V RR R R Sbjct: 551 ARAEATPAAPQAAAPVPAQGGFVSWLKSLFGGKPAEPVVAAPVETPKRAEDGNRRDRGNR 610 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY-----DV 692 + G + Q D N D Sbjct: 611 QDRGGRTGQRGERGERQGQQQAGRDGQRQGQGRDGGRNEAREGQAQREGQREGQRGGRDR 670 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTR 717 + P T E E+ + ++ R Sbjct: 671 NRQPAETAERETVEARQPQQGQEAR 695 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGN 110 >gi|237746017|ref|ZP_04576497.1| ribonuclease E protein [Oxalobacter formigenes HOxBLS] gi|229377368|gb|EEO27459.1| ribonuclease E protein [Oxalobacter formigenes HOxBLS] Length = 988 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 202/587 (34%), Positives = 300/587 (51%), Gaps = 40/587 (6%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R I++ + Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR++ Sbjct: 85 RSATIKDALSEGQEVMVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E L+VP GM +I RTAG RT E++ D YL++LW+ + ++ Sbjct: 145 EERQE-LRETMDKLDVPPGMSIIARTAGIGRTVEELQWDLNYLLQLWNAIESAGSSAPGA 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ RAIRD + DI EI++ ++ Y +A+ FM +MP A V++Y D P+ Sbjct: 204 FLIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQARQFMSYVMPDMANRVKRYRDGVPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q++S + V+LPS G ++I+ TEALV+IDVNS RSTR IE TA TN E Sbjct: 264 FSRFQIEHQIESAYSRVVSLPSGGSIVIDHTEALVAIDVNSARSTRGTDIETTAFTTNCE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQLRLRDL GLIV+DFIDME KN R +E +LKE+L DRARVQ+ I+ FGL+ Sbjct: 324 AAEEVARQLRLRDLGGLIVIDFIDMESPKNRREIETRLKEALHYDRARVQMDKITRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R S+ E + C C G G+IR S AL +LR +EE ++ ++ I V Sbjct: 384 ELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIEEESMKESSAVIHVQIPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH------ 579 DV +LLN+KR I++ EAR V I ++ L + +E+ + Sbjct: 444 DVAAFLLNEKRGEIMKIEARHKVEIVLIPNKYLETPHYKLERIKHDDPRLEEPQLSYKLA 503 Query: 580 -------KVGSDSQAPSYDKNIECVWQDEALLPIP------------------------- 607 + P+ V +P P Sbjct: 504 EQSDIDMSFSKRQKEPARPSQEAVVKNIPEGMPAPVVDHSLAPAEAEKGFFDRLLGFFGI 563 Query: 608 -KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 K+E++++ ++ + R R R R D + +++ Sbjct: 564 GKTEAVQEEPVEKQPAKNVRKGKNGERSRNRGRRGEPREDRSKSVQPAVSSAEQEETVAA 623 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + + S E + ++ P V Sbjct: 624 SPKNTRQRRTRGEKGERQREDRRPAKSEEDSIKQEAPVTTVAARPEV 670 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D ES ++ K NIY A +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIESNARELHKSNIYKAVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ ++ R A +K++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSLFRDGVDVRSATIKDALSEGQEVMVQVEKEERGN 110 >gi|294504207|ref|YP_003568269.1| ribonuclease E [Yersinia pestis Z176003] gi|262362324|gb|ACY59045.1| ribonuclease E [Yersinia pestis D106004] gi|294354666|gb|ADE65007.1| ribonuclease E [Yersinia pestis Z176003] Length = 1218 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 545 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 546 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 605 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 606 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 636 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|197335030|ref|YP_002156570.1| ribonuclease E [Vibrio fischeri MJ11] gi|197316520|gb|ACH65967.1| ribonuclease E [Vibrio fischeri MJ11] Length = 995 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 192/565 (33%), Positives = 305/565 (53%), Gaps = 13/565 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D ++ Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ V+ + ++ AP L+++E N+I RAIRD +DI EI++ K + A+ ++L+ P Sbjct: 191 WEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ YE P+F IE Q++S + EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKLYEGEVPLFSHYQIESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V + +V ++ F + + Sbjct: 431 LKDNTTQVLAVVPVSIASYLLNEKRRSVQHIEKFHDVRVIIVPNSDMETPHFEVIRIRDG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + E ++ ++ I + E + + + K Sbjct: 491 EEQEMLSYLL-----PKKLEALREAESKEAPVVNIAPKKREEPVLQGFSAPTQAAPVAK- 544 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSI 656 + ++ A G++S Sbjct: 545 -AQPEKKAEAKTEEKPGIISRFFKA 568 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 +RHGFLP EI +Y YQ + + L + + + + Sbjct: 62 ADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNK 112 >gi|320538810|ref|ZP_08038487.1| putative fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Serratia symbiotica str. Tucson] gi|320031155|gb|EFW13157.1| putative fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Serratia symbiotica str. Tucson] Length = 1028 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 195/636 (30%), Positives = 310/636 (48%), Gaps = 18/636 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 10 QREELRVALVDGQRLYDLDIESPGYEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + I++ ++ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPSNYSSHGRPNIKDALREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + + Sbjct: 130 MPNNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRL 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LL 328 + W+ +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L Sbjct: 189 KHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALG 248 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R Sbjct: 249 RPDFSSKIKLYSGEIPMFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +TR IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+++++ Sbjct: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVR 368 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 +DRAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S+ALSILR +E Sbjct: 369 QDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIE 428 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA-RFGVSINVVIGIELADKLFYIEK 567 E L+ + V YLLN+KR ++ E + GV +V ++ + + + Sbjct: 429 EEALKENTKEVHAIVPVQVASYLLNEKRDSVSAIEKCQAGVKAIIVPNDQMQTPHYSVLR 488 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + + + + + + + + + +EE Sbjct: 489 VRKGEETPTLSYLLPKLHEEEMMQLLEDASAERKRPEQPALATFSLAADNPLPTEEPVIT 548 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM-YMEPSDITNHNLLENGAHGF 686 + A G+++ + + S + + + EN Sbjct: 549 ---------KSAAAIAVAKPGLLNRLFGGLKALLASEEHPAAIETKLAEAPQAENNVENR 599 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + +P +++ RR Sbjct: 600 RPQRRSRQGSGRKERAEGRDKRENPEPRESGEEPRR 635 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQREELRVALVDGQRLYDLDIESPGYEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|53804451|ref|YP_113938.1| ribonuclease E [Methylococcus capsulatus str. Bath] gi|53758212|gb|AAU92503.1| ribonuclease E [Methylococcus capsulatus str. Bath] Length = 885 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 202/556 (36%), Positives = 289/556 (51%), Gaps = 2/556 (0%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 + I++V+K Q ++VQ+ KEERG KGAA+TTY+SLAG Y VLMPN K ISR+I Sbjct: 88 RREIKDVLKEGQEVVVQVEKEERGTKGAALTTYISLAGSYLVLMPNNPKAGGISRRIEGD 147 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 V KE L VP MGVI+RTAG +T E++ D YL++LW+ + AP Sbjct: 148 VRSDM-KETLSQLHVPEDMGVIIRTAGGGKTVEELQWDLNYLLQLWEAIERSTREKPAPF 206 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+++E N+I RA+RD DI EI+V +R F++ +MP + R Y+D P+F Sbjct: 207 LIFQESNVIIRALRDHLRGDIDEILVDNPSTFRLVHSFLQQVMPQFINKARLYQDNVPLF 266 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 R IE Q+++ + EV LPS G ++I+ TEAL +ID+NS R+T+ IE+TAL TNLEA Sbjct: 267 SRYQIESQIETAYAREVPLPSGGAIVIDHTEALTTIDINSARATKGGDIEETALNTNLEA 326 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+EIARQLRLRDL GL V+DFIDM +N R+VE +L+E+++ DRAR+Q+G IS FGL+E Sbjct: 327 ADEIARQLRLRDLGGLFVIDFIDMMAARNQRAVENRLREAVRLDRARIQLGRISRFGLME 386 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 MSRQR+R S+ E+ C CKG G IRS S+ALSILR +EE ++ II + Sbjct: 387 MSRQRLRPSLTETALLTCPRCKGQGTIRSVESLALSILRVLEEETMKKNTDRIIAQLPVE 446 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA-LVNTGHKVGSDS 585 YLLN+KRA I + E R V+I ++ L + I++ A K Sbjct: 447 SATYLLNEKRAAIQQIEVRHNVAITIIPNPHLETPNYDIQRIRSGGAGGEEEIRKSSYQL 506 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 A + + A P + + + + + Sbjct: 507 IAEKSPETPKPTRTPSAAAEAPAVREFIPTAPQPGGGDQRAQAQPGQPGGGLIKRFLNIL 566 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 + D Q S + + + A D S S + Sbjct: 567 TGQRIEDQPPSQEASQPSAGLPLPVPFVQTGKTAGAQAETGAPPTDDSDHSGSQRRRDHR 626 Query: 706 NSSSDPIVKKTRWWKR 721 + S ++ +R Sbjct: 627 DGSRRGGNRRKHPAQR 642 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 38/76 (50%), Positives = 52/76 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ + D E ++Q K NIY +TRVEPSL+AAFV++G Sbjct: 2 KRMLINATQPEELRVALVDGQKLYDFDIEIPAREQKKANIYKGLITRVEPSLEAAFVNFG 61 Query: 63 GNRHGFLPFLEIHPDY 78 RHGFLPF EI P Y Sbjct: 62 AERHGFLPFKEILPKY 77 >gi|51596801|ref|YP_070992.1| ribonuclease E [Yersinia pseudotuberculosis IP 32953] gi|51590083|emb|CAH21717.1| ribonuclease E [Yersinia pseudotuberculosis IP 32953] Length = 1230 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|163856052|ref|YP_001630350.1| ribonuclease E [Bordetella petrii DSM 12804] gi|163259780|emb|CAP42081.1| ribonuclease E [Bordetella petrii] Length = 995 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 202/570 (35%), Positives = 297/570 (52%), Gaps = 33/570 (5%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR++ Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L++ LEVP GM +I RTAG R E++ D YLM+LW + A ++ AP Sbjct: 145 EDRQE-LRDTMEQLEVPQGMSIIARTAGIGRNVEELQWDLSYLMQLWTAIDSAARDNAAP 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ RAIRD + +I EI++ ++ +A FM ++MP + V++Y D P+ Sbjct: 204 ILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ + V LPS G V+I+ TEALV++DVNS RSTR IE+TAL+TNLE Sbjct: 264 FSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTRGSDIEETALRTNLE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L DRARVQ+G IS FGL+ Sbjct: 324 AADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQRLRDALHFDRARVQMGKISRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R ++ E + C C G G IR S AL +LR ++E ++ + Sbjct: 384 ELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEAMKENTAAVHAQVPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +LLN+KRA I + EAR V++ ++ L +IE+ + + Sbjct: 444 DVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPHHHIERLRHDDPRLEEVKTSFELA 503 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQ----------------------------- 616 +APS D Q+ P + + Q Sbjct: 504 EAPSTDMAWAPRDQEVKARPEALVKGITPSQPAPVSTAPAAAPAASGGFGGLFKRLVGWL 563 Query: 617 ---DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + KR R +R + + Sbjct: 564 SGSAEPAAPAAAKEEPKRGGSRAKRGHDGQERRGERHGSDRGRNRRGEPRSETAEADGAA 623 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEME 703 +H E + + PE Sbjct: 624 RHHVRGNRRHEERAERPPRAERDTARPERA 653 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGN 110 >gi|162421481|ref|YP_001607837.1| ribonuclease E [Yersinia pestis Angola] gi|162354296|gb|ABX88244.1| ribonuclease E [Yersinia pestis Angola] Length = 1216 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 203/641 (31%), Positives = 327/641 (51%), Gaps = 20/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE-------- 680 + +TD G S + S ++N+ S + ++P+++ + E Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608 Query: 681 -NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + + P N++ D + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRYNTNRDNTSRDNANRD 649 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|149926439|ref|ZP_01914700.1| ribonuclease E [Limnobacter sp. MED105] gi|149824802|gb|EDM84016.1| ribonuclease E [Limnobacter sp. MED105] Length = 972 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 202/538 (37%), Positives = 298/538 (55%), Gaps = 7/538 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKSNIYKGIITRVEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IQ+V+K Q L VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISRQYFKEGVEAGKARIQDVVKEGQELFVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEERQE-LREALDKLEYPKGMSIIARTAGIGRSVEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + ++ L+Y+E +L+ RAIRD + DI E+++ ++ Y +AK FM+ +MP Sbjct: 191 TAIDGAGKSANGAFLIYQESSLVIRAIRDYFSPDIGEVLIDTDEIYDQAKQFMQHVMPDM 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 +V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALVSIDVNS RSTR Sbjct: 251 MNLVKRYRDDIPLFSRFQIEHQIETAYSRMVPLPSGGAIVIDHTEALVSIDVNSARSTRG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IEDTAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME+ N + VE ++K+SL DRA Sbjct: 311 TDIEDTALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEKASNQKEVENRVKDSLHFDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQRIR ++ E + C C G G IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRIRPALNEGSHTTCPRCNGTGVIRDTESTALHVLRILQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + ++ V DV +LLN+KR+ I + EAR V++ ++ L + I + Sbjct: 431 KEGTASVHVQVPVDVATFLLNEKRSEIYKLEARLKVNVLLIPNKNLETPHYEITRLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + S A S D+ + E + ++ + + K Sbjct: 491 ERLEDPRQ--SFELATSKDEQSYYDKKTEGEAVKRQEAVIKGVIPTQPAPPHQERKPK 546 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ ++D E+ ++Q K NIY +TRVEPSL+A FV+YG Sbjct: 2 KRMLFNATHSEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGIITRVEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y++ +A +++ + + G+ Sbjct: 62 EDRHGFLPFKEISRQYFKEGVEAGKARIQDVVKEGQELFVQVEKEERGN 110 >gi|289665911|ref|ZP_06487492.1| ribonuclease E [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 969 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 210/653 (32%), Positives = 315/653 (48%), Gaps = 49/653 (7%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 7 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMTSSKHQREVENKLQNALKYD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 485 Query: 571 VQALV------------------------------NTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP ++ V Sbjct: 486 NELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPAPVREEAPAPVAPV 545 Query: 601 EALLPIPKSESLEDIQ--------------DNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 A P+ + + EST R+ R R + Sbjct: 546 AAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRNERGERGG 605 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + + + + + PP + Sbjct: 606 QRRDGRDARNGGNGNGANKERRDERRQPASGQGAQNGAQAQQQVQAPKPPRNE 658 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 62/107 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 61 RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107 >gi|28199849|ref|NP_780163.1| ribonuclease E [Xylella fastidiosa Temecula1] gi|182682600|ref|YP_001830760.1| ribonuclease [Xylella fastidiosa M23] gi|28057970|gb|AAO29812.1| ribonuclease E [Xylella fastidiosa Temecula1] gi|182632710|gb|ACB93486.1| ribonuclease, Rne/Rng family [Xylella fastidiosa M23] gi|307578883|gb|ADN62852.1| ribonuclease E [Xylella fastidiosa subsp. fastidiosa GB514] Length = 1132 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 211/612 (34%), Positives = 324/612 (52%), Gaps = 16/612 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D + D+ I ++ + I E S+ +A D ++ Sbjct: 10 QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L +P MGVI+RTAG R E++ D ++L+ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ AP L+Y+E LI RA+RD + DI EI+V E+ Y++A FM+ +MP Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHQFMRHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y+D P+F R IE Q++ ++ V LPS G ++++QTEAL +IDVNS R+T Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM K+ R +E +L+ LK D Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+ IS FGLLEMSRQR+R S+ ES+ VC YC G G +RS S++LSI+R VEE+ Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + ++V T ++ YLLN+KR I E E R I ++ +L + + + Sbjct: 429 AMKESTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629 + TG + + ++ L IP + +++ I + Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSITPPQLAPTQENIPTI 544 Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R P + + + Q + S ++ + N E Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERNR 604 Query: 684 HGFTENYDVSIP 695 + P Sbjct: 605 RDGQIATSNTQP 616 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 TDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGN 110 >gi|329297206|ref|ZP_08254542.1| ribonuclease E [Plautia stali symbiont] Length = 1075 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 198/645 (30%), Positives = 307/645 (47%), Gaps = 19/645 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSALELPDGMGLIVRTAGVGKSAESLQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + +P L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAADSRPSPLLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V ++ + + + Sbjct: 428 ALKDNTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMETPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + E + P + + D V Sbjct: 488 KGEETQTLSYHLPKLHEAEMALPSEEEHAERRRPEQPALAAFVMPDAPPAPVEVSEESQP 547 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDV----------SSIQNVIDDSFDMYMEPSDITNHNL 678 + + A G V+ + + + Sbjct: 548 AAVDVKAKPAVAAPATVSTGFVARLLGGLKKLFAGDAPAAAPAEEKTEAKTADGENTQQR 607 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + N P + +S ++ R R+ Sbjct: 608 GECRNNRRNNNNRRERTPRNGEHAQSREGREPREAREPRDQDNRR 652 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|190575133|ref|YP_001972978.1| putative ribonuclease E [Stenotrophomonas maltophilia K279a] gi|190013055|emb|CAQ46687.1| putative ribonuclease E [Stenotrophomonas maltophilia K279a] Length = 1097 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 199/501 (39%), Positives = 288/501 (57%), Gaps = 5/501 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D + D+ I ++ + I E S+ +A + Sbjct: 10 QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGGRHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E++K Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LK+ L +P MGVI+RTAG R E++ D +YL+ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLNIPDDMGVIIRTAGVGRDAEELQWDLDYLLN 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W + E AL+ AP L+Y+E LI RA+RD DI EI+V E+ Y A++FM+ +MP Sbjct: 189 VWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAREFMQQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y+D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L +LK D Sbjct: 309 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLANALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQVG IS FGLLEMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPHYTVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYD 591 + + Sbjct: 489 NELGEESSKPSYQRGTPRKLP 509 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++ R+EPSL+AAFV+YG Sbjct: 2 KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 G RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 GGRHGFLPLKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGN 110 >gi|121998032|ref|YP_001002819.1| ribonuclease [Halorhodospira halophila SL1] gi|121589437|gb|ABM62017.1| RNAse E [Halorhodospira halophila SL1] Length = 928 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 213/600 (35%), Positives = 319/600 (53%), Gaps = 4/600 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I ++ A I E S+ +A + K Sbjct: 12 EELRVALVDGQILYDLDIEAPSREQKKANIYKGIITRVEPSLEAAFVQYGAERHGFLPFK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 +P ++ ++ ++ Q +LVQ+ KEERGNKGAA+TTY+SLAGRY VLMPN Sbjct: 72 EIAPAYFTSADGQRNSPKDGLRENQEVLVQVDKEERGNKGAALTTYISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + +SR+I + ++E R L+VP GMG+I+RTAG R+ E++ D +YL++LWD Sbjct: 132 PRAGGVSRRIEGSDRAE-IRESLRQLDVPEGMGLIVRTAGVGRSTEELQWDLDYLLKLWD 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ AP LVY+E ++I RA+RD DI EI+V ++ + +A+DF+ +MP Sbjct: 191 AIQNATAERAAPFLVYQESDVIIRALRDYLRSDIGEILVDDDEVFSKARDFIDQVMPYNR 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 + ++ Y DP P+F R IE Q++S Q +V LPS G + I+ TEAL+SID+NS R+T+ Sbjct: 251 QKLKHYTDPVPLFSRYQIESQIESAFQRDVRLPSGGAIAIDHTEALISIDINSSRATKGA 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++K DRAR Sbjct: 311 DIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPPRHQREVESRLREAVKADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+RSS+ E+ +VC C G G +RS S+ALSILR +EE ++ Sbjct: 371 VQIGRISRFGLLEMSRQRLRSSLGEAHQEVCGRCGGQGTVRSVESLALSILRIIEEEAMK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 ++ +V +LLN+KRA I E E R+GV I ++ L + I++ + Sbjct: 431 EKTGRVLAQLPIEVATFLLNEKRAQIAELEHRYGVHILLIPNRNLETPHYDIQRMRTDEG 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 +G + A + P + + S + Sbjct: 491 PEQSGSSYNLATPAAEPTVIEAGLPASRPPAPAVQGVTPSAPAPGPASGTEERKRPTGQG 550 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + A + + + + P D + +E E + Sbjct: 551 AEGQGEDAPLSSIFRRLRGLLFQNSTDQERLTEGDSPRDKASPRRVEAEPEASEERGGRN 610 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD E+ ++Q K NIY +TRVEPSL+AAFV YG Sbjct: 2 KRMLINATQPEELRVALVDGQILYDLDIEAPSREQKKANIYKGIITRVEPSLEAAFVQYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLPF EI P Y+ Sbjct: 62 AERHGFLPFKEIAPAYF 78 >gi|241662582|ref|YP_002980942.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D] gi|240864609|gb|ACS62270.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D] Length = 1008 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 193/469 (41%), Positives = 281/469 (59%), Gaps = 1/469 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 85 RNARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E LEVP GM +I RTAG R+ E++ D YLM+LW V A+++ AP Sbjct: 145 EDRQE-LRETMAQLEVPDGMSIIARTAGIGRSAEELQWDLNYLMQLWKAVDGAAVDNKAP 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP V++Y D P+ Sbjct: 204 LLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDNMNRVKKYRDDVPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q++S + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA +TNLE Sbjct: 264 FSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAIDVNSARATKGADIEETAARTNLE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRARVQ+G IS FGL+ Sbjct: 324 AADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRARVQMGKISRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R S+ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 384 ELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQVPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 +V +LLN+KR I E RF V++ ++ L + +E+ ++ + Sbjct: 444 EVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDDPRLDEDKASYKMA 503 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + + + + P+ E+ + +R R Sbjct: 504 EEAAKELEADTAYSTRKEAAKPRQEAAVKGITPDQPAPVSVPRAERPAR 552 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKDGVDVRNARIQDALREGQELIVQVEKEERGN 110 >gi|159184719|ref|NP_354345.2| ribonuclease E [Agrobacterium tumefaciens str. C58] gi|159140007|gb|AAK87130.2| ribonuclease E [Agrobacterium tumefaciens str. C58] Length = 977 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 332/589 (56%), Positives = 405/589 (68%), Gaps = 9/589 (1%) Query: 112 VTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQ 171 T +E + + + +++ ED P+ V +K ++QY IQ Sbjct: 211 DTDTISEEVEGLRRGNDDDDDDDDDDHHEKEVIESVGAEDAMEEVPDRVARKPRKQYRIQ 270 Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 EVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKIT P DRK Sbjct: 271 EVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKR 330 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 LKEIAR LEVP GMGVILRTAGA+RT++EIKRDFEYLMRLW+NVR L LNS AP LVYEE Sbjct: 331 LKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEE 390 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 G+LIKR+IRDLY KDISEIIVSGE+GYREAKDFMK+LMPS+A++V+ Y D HPIF RSGI Sbjct: 391 GSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGI 450 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E QLD + Q +VTL S GY+IINQTEALV+IDVNSGRSTREH IE+TAL TNLEAAEE+A Sbjct: 451 EAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAEEVA 510 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRDLAGL+V+DFIDMEEK+NNRSVEKKLK+ LK DRAR+QVG IS+FGLLEMSRQR Sbjct: 511 RQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQR 570 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 IR+SVLESTT+VC +C G G++RS+SS+AL +LR VEEYLL+ T HNI V + LYL Sbjct: 571 IRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETALYL 630 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN-TGHKVGSDSQAPSY 590 LN KR +IV+YE RFGV+I + + + F I++G V+ V S Sbjct: 631 LNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSFVEEE 690 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 D + V +DE I K+ES + Q G +++RRRRRR + + + + Sbjct: 691 DDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRRRRGKGGQNEQNGALD 750 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + D D +D + ENGA+ Sbjct: 751 GQSGNDAEDDDAEGDDDGVETDEAGADSDENGANE--------AANADE 791 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 87/178 (48%), Positives = 109/178 (61%), Gaps = 1/178 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFESEHKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVTIPNDHS 119 YGGNRHGFL F EIHPDYYQIP +DRQALLK + + + D + + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDFESADAPESGAPMIDLSQ 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177 +++ + ET + ++ V V + + + + V + R Sbjct: 121 VDQPDVGIVAASETTDVAVTEEVAPVSEAVSEETAVEVVAEEAPAEEEKPKKRVRRPR 178 >gi|113868542|ref|YP_727031.1| ribonuclease G and E [Ralstonia eutropha H16] gi|113527318|emb|CAJ93663.1| Ribonuclease G and E [Ralstonia eutropha H16] Length = 1024 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 207/669 (30%), Positives = 311/669 (46%), Gaps = 43/669 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L VP GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLTVPEGMSIIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A ++ AP L+Y E +L+ RAIRD + DI EI++ ++ Y +A+ FM ++MP Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKV----------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + + S + E + EA + E + Sbjct: 491 PRLEESTASYRMAEAAAKELEADTSYSSRRKEEAKPRQEAAVKGITPEQPAPVSVPRPER 550 Query: 623 ESTGVIRKRR---------------------RRRRRRRPATDHHDAGVVSDVSSIQNVID 661 R P + V ++ S + + Sbjct: 551 APKPEAPVAPPVPATQPVVSGGFIAWLKGLFGARPATPPVVEPAKPAVATEARSAEGRRE 610 Query: 662 DSFDMYMEPSDITNHNLLENGAHG-------FTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E G + D + + Sbjct: 611 RGQRGEGRGLRGERGDRAERGERAERGERQGRGQRGDRAERAERGERQGAERGEQREGRG 670 Query: 715 KTRWWKRRK 723 + + + R+ Sbjct: 671 ERQGRQPRQ 679 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGN 110 >gi|45442053|ref|NP_993592.1| ribonuclease E [Yersinia pestis biovar Microtus str. 91001] gi|108807930|ref|YP_651846.1| ribonuclease E [Yersinia pestis Antiqua] gi|149366506|ref|ZP_01888540.1| ribonuclease E [Yersinia pestis CA88-4125] gi|165925486|ref|ZP_02221318.1| ribonuclease E [Yersinia pestis biovar Orientalis str. F1991016] gi|165938509|ref|ZP_02227066.1| ribonuclease E [Yersinia pestis biovar Orientalis str. IP275] gi|166008153|ref|ZP_02229051.1| ribonuclease E [Yersinia pestis biovar Antiqua str. E1979001] gi|166214603|ref|ZP_02240638.1| ribonuclease E [Yersinia pestis biovar Antiqua str. B42003004] gi|167402397|ref|ZP_02307860.1| ribonuclease E [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421715|ref|ZP_02313468.1| ribonuclease E [Yersinia pestis biovar Orientalis str. MG05-1020] gi|218928726|ref|YP_002346601.1| ribonuclease E [Yersinia pestis CO92] gi|229841578|ref|ZP_04461737.1| RNase E [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843690|ref|ZP_04463833.1| RNase E [Yersinia pestis biovar Orientalis str. India 195] gi|229894435|ref|ZP_04509617.1| RNase E [Yersinia pestis Pestoides A] gi|45436916|gb|AAS62469.1| ribonuclease E [Yersinia pestis biovar Microtus str. 91001] gi|108779843|gb|ABG13901.1| RNAse E [Yersinia pestis Antiqua] gi|115347337|emb|CAL20235.1| ribonuclease E [Yersinia pestis CO92] gi|149290880|gb|EDM40955.1| ribonuclease E [Yersinia pestis CA88-4125] gi|165913624|gb|EDR32244.1| ribonuclease E [Yersinia pestis biovar Orientalis str. IP275] gi|165922595|gb|EDR39746.1| ribonuclease E [Yersinia pestis biovar Orientalis str. F1991016] gi|165992535|gb|EDR44836.1| ribonuclease E [Yersinia pestis biovar Antiqua str. E1979001] gi|166204210|gb|EDR48690.1| ribonuclease E [Yersinia pestis biovar Antiqua str. B42003004] gi|166960200|gb|EDR56221.1| ribonuclease E [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048230|gb|EDR59638.1| ribonuclease E [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229689298|gb|EEO81361.1| RNase E [Yersinia pestis biovar Orientalis str. India 195] gi|229697944|gb|EEO87991.1| RNase E [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703454|gb|EEO90471.1| RNase E [Yersinia pestis Pestoides A] Length = 1221 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRRN 608 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|294625340|ref|ZP_06703976.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600358|gb|EFF44459.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 631 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 209/612 (34%), Positives = 319/612 (52%), Gaps = 12/612 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + +G + +A L IP + ++ I+ + + Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL----TKAQLNIPAAPAVTSIKPSQPAPVREEAPAP 544 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 GVV + I ++ + P + G + +E Sbjct: 545 VAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEP---IAPAPESTPRPRQNDAGRNSRSERG 601 Query: 691 DVSIPPVSTPEM 702 + + Sbjct: 602 ERGGQRRDGRDA 613 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|298370247|ref|ZP_06981563.1| ribonuclease E [Neisseria sp. oral taxon 014 str. F0314] gi|298281707|gb|EFI23196.1| ribonuclease E [Neisseria sp. oral taxon 014 str. F0314] Length = 989 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 198/625 (31%), Positives = 307/625 (49%), Gaps = 21/625 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD Y DI EI+V ++ + + +FM +MP+ Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYYRPDIGEILVDNQEVHDQVAEFMSYVMPN 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488 Query: 572 QALVNTGHKVGSDSQAPSYDKNI----ECVWQDEALLPIPKSESLEDIQDNIVSEEST-- 625 + ++ + E + + +++ Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTVSGERQASWW 548 Query: 626 -----------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 G + ++ A + N + + Sbjct: 549 DNFKAWLSRIFGNTPAPETAKAAEPEKSEKRSADSSRGSNRRGNSRRQNPRRSNKRDGSK 608 Query: 675 NHNLLENGAHGFTENYDVSIPPVST 699 N T++ ++ + Sbjct: 609 VEVQEINARAEETKDESKTLEQEES 633 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 62 TDRHGFLPFKEVSRSYFQ 79 >gi|238754376|ref|ZP_04615732.1| Ribonuclease E [Yersinia ruckeri ATCC 29473] gi|238707409|gb|EEP99770.1| Ribonuclease E [Yersinia ruckeri ATCC 29473] Length = 1148 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 201/637 (31%), Positives = 321/637 (50%), Gaps = 26/637 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSHYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R G V +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + P + +EA + + E ++ +E Sbjct: 491 KGEEVPTLSYLL------PKLHEEEMAQPLEEAPMERKRPEQPALATFSLPTEVPPEAEP 544 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE-------- 680 + + A G+ + S ++N+ + ++P + E Sbjct: 545 VTVAKPVAQPVAASAAQPGLFGRLMSGLKNLFAAPAEAEVKPQETEKTENTENRRQDRRN 604 Query: 681 --NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 +G + D P ES+ ++ ++ Sbjct: 605 PRRQNNGRKDRGDR-TPREGRENRESNRDNNTSTTRE 640 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|291084674|ref|ZP_06540858.2| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 650 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 193/623 (30%), Positives = 306/623 (49%), Gaps = 12/623 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSSSDP 711 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRARRD 630 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|15839196|ref|NP_299884.1| ribonuclease E [Xylella fastidiosa 9a5c] gi|9107829|gb|AAF85404.1|AE004067_11 ribonuclease E [Xylella fastidiosa 9a5c] Length = 1132 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 210/599 (35%), Positives = 322/599 (53%), Gaps = 16/599 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D + D+ I ++ + I E S+ +A D ++ Sbjct: 10 QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L +P MGVI+RTAG R E++ D ++L+ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ AP L+Y+E LI RA+RD + DI EI+V E+ Y++A +FM+ +MP Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHEFMRHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y+D P+F R IE Q++ ++ V LPS G ++++QTEAL +IDVNS R+T Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM K+ R +E +L+ LK D Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+ IS FGLLEMSRQR+R S+ ES+ VC YC G G +RS S++LSI+R VEE+ Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V T ++ YLLN+KR I E E R I ++ +L + + + Sbjct: 429 AMKENTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629 + TG + + ++ L IP + +++ I + Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSIPPPQLAPTQENIPTI 544 Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + + R P + + + Q + S ++ + N E Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERN 603 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 TDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGN 110 >gi|156934430|ref|YP_001438346.1| ribonuclease E [Cronobacter sakazakii ATCC BAA-894] gi|156532684|gb|ABU77510.1| hypothetical protein ESA_02261 [Cronobacter sakazakii ATCC BAA-894] Length = 1058 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 200/624 (32%), Positives = 305/624 (48%), Gaps = 12/624 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A N AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR I E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKREAITAIETRQGGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + + D+ + Sbjct: 491 KGEETHTLSYMLPKLHEEAMALPSEDEYAERKRPEQPALATFVMPDVPPVPQETAAPKAE 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + A G +S S + S + +N E Sbjct: 551 TAAPKAPVN---AAAPAKEGFLSRAISALKSLFASEPQAQPVASEPEQQPAKNRDEKQQE 607 Query: 689 NYDVSIPPVSTPEMESSNSSSDPI 712 + E + S Sbjct: 608 RRNGRRQNNRRDRNERGDRSERGE 631 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|209548905|ref|YP_002280822.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534661|gb|ACI54596.1| ribonuclease, Rne/Rng family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 965 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 321/535 (60%), Positives = 391/535 (73%), Gaps = 2/535 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV-- 149 E+ A + + S+ E + + +++ +V+ +V Sbjct: 187 EAEGASSVDNEDDGSTGGAMAAMVETDSISEDIDTSKRRHDDDDDDDDHGEEEVIESVGA 246 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ED P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVL Sbjct: 247 EDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVL 306 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLM Sbjct: 307 MPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLM 366 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE+GYREAKDFMK+LM Sbjct: 367 RLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLM 426 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRS Sbjct: 427 PSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRS 486 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH IEDTALQTNLEAAEEIARQLRLRDLAGLIV+DFIDMEEK+NNR+VEKKLKE LK Sbjct: 487 TREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKN 546 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC++C G+G++RSQSSVAL +LR +EE Sbjct: 547 DRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEE 606 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 YLL+ T HNI V T D+ LYLLN KR TI++YE RFGV+I + + + F I++G Sbjct: 607 YLLKNTTHNISVRTTPDIALYLLNHKRQTIIDYENRFGVAIVIDADGSVGAQHFAIDRGE 666 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 V+ V + D +I ++ + + + + SE Sbjct: 667 AVENPVKIETLFNFAAIPEDDDDDIVIEIDEDEDEELEEKPAATERPVAARSEGE 721 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 98/279 (35%), Positives = 133/279 (47%), Gaps = 4/279 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ + +DV H + D S Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLSK 116 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ + E E + ++A V + K R+ + + Sbjct: 117 QDQPDVGIVPAEAPETADVTAEPAAAEAVASPEATEEAPAKKARPRRSRKKAAEPAPETT 176 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + A + G M + ++IS I R + + Sbjct: 177 ATEDAVPTDVEAEGASSVDNEDDGSTGGAMAAMVETDSISEDIDTSKRRHDDDDDDDDHG 236 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + ++R R+ + ++ Sbjct: 237 EEEVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQ 275 Score = 44.2 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 1/155 (0%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G + ++ S D EA+ + + V Sbjct: 809 GEAGEDNGGDDGGEEGEADDVSNDGAPGEAETVEAVAEQAGESQAAAAAVEGAAIVAEDV 868 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R R RR+ A + V+ + + ++ P+ + Sbjct: 869 KPARGRGRRKAAAAPVEEPVAEAAPVAEAEPELVEASADLETPAQEEAPEEAKPVRANRE 928 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N S P V + E+ S D KK WW+RR Sbjct: 929 SNITSSEPTVKSTRSENGESD-DGKPKKAGWWQRR 962 >gi|330829707|ref|YP_004392659.1| ribonuclease E [Aeromonas veronii B565] gi|328804843|gb|AEB50042.1| Ribonuclease E [Aeromonas veronii B565] Length = 1027 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 210/680 (30%), Positives = 317/680 (46%), Gaps = 58/680 (8%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 7 QEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 66 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + ++ + I+EV++ Q ++VQI KEERG KGAA+TT++SLAG Y VL Sbjct: 67 LKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVL 126 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE GL VP GMG+I+RTAG ++ E++ D L+ Sbjct: 127 MPNNPRAGGISRRIEGDERTE-LKEALSGLTVPEGMGLIVRTAGVGKSPEELEWDLNVLL 185 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 WD++ + + AP L+++E N+I RAIRD +D+ EI++ + AK ++L+ Sbjct: 186 NHWDSIHKASQERAAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVR 245 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ Y+ +F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 246 PDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRA 305 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++ + Sbjct: 306 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQ 365 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLEMSRQR+R S+ ES++ +C C+G G IR S+ALSILR +EE Sbjct: 366 DRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSILRLIEE 425 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ + DV YLLN+KRA I E R V + ++ L + + + Sbjct: 426 EAMKDNTEQVHGQVPVDVAAYLLNEKRAAIASLEQRNDVRVYIIPNQHLETPHYEVTRIR 485 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------------------------- 601 + +++ ++ P Y V + E Sbjct: 486 QNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFAQPAQPAPVAPQQPAAPVAAA 545 Query: 602 ------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 + P + R +R R R Sbjct: 546 PAEAGFFSKLIKGITGLFSSDAAPADVKAPTEKPAAREARKDEGQRHQREEGRGRGQRPR 605 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSD------ITNHNLLENGAHGFTENYDVSIPPV 697 D + + + E + E +E P Sbjct: 606 RDDNRGNRNNAEAGEKREGGNREAGENRNRRPRKEREPRQEREARGEVRSEQRMEREPRQ 665 Query: 698 STPEMESSNSSSDPIVKKTR 717 E + ++ R Sbjct: 666 EREPREPRQERAPRPAREPR 685 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIARNYF 75 >gi|186895873|ref|YP_001872985.1| ribonuclease E [Yersinia pseudotuberculosis PB1/+] gi|186698899|gb|ACC89528.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis PB1/+] Length = 1235 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 14/631 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + EE+ V + Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVAK 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHG 685 + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 549 AKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASENRRNDRRN 608 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 609 PRRQNNGRKERNDRTPREGRDNSSRDNTNRD 639 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|317047699|ref|YP_004115347.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b] gi|316949316|gb|ADU68791.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b] Length = 1081 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 196/603 (32%), Positives = 303/603 (50%), Gaps = 12/603 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPEGMGLIVRTAGVGKSAESLQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKDNTKEVHAIVPVPVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQA----PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + + +A PS ++ E ++ L + E Sbjct: 491 KGEETQTLSYHLPKLHEAEMALPSEEEQAERRRPEQPALAAFVMPDAPPAPVEVAEESQP 550 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 V + ++ + A G ++ + + P Sbjct: 551 VVKAEPKKAKPTATVAAPAASTGFMARLLGGLKKLFVGDAPAAAPEASEKQESKATDGEN 610 Query: 686 FTE 688 + Sbjct: 611 GQQ 613 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|238026594|ref|YP_002910825.1| ribonuclease E [Burkholderia glumae BGR1] gi|237875788|gb|ACR28121.1| Ribonuclease E [Burkholderia glumae BGR1] Length = 1125 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 196/539 (36%), Positives = 300/539 (55%), Gaps = 8/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E LE+P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLEIPEGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVR--ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + ++ P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 HAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEESTGVI 628 A ++ ++ + + E + PK E+ + I + + + Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTGDVKPKQEAAVKGITPDHPAPGAPQRE 549 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|59712355|ref|YP_205131.1| hypothetical protein VF_1748 [Vibrio fischeri ES114] gi|59480456|gb|AAW86243.1| rne [Vibrio fischeri ES114] Length = 994 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 192/565 (33%), Positives = 305/565 (53%), Gaps = 13/565 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D ++ Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ V+ + ++ AP L+++E N+I RAIRD +DI EI++ K + A+ ++L+ P Sbjct: 191 WEAVKHASESNQAPFLIHQESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ YE P+F IE Q++S + EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKLYEGEVPLFSHYQIESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V + +V ++ F + + Sbjct: 431 LKDNTTQVLAVVPVSIASYLLNEKRRSVQHIEKFHDVRVIIVPNSDMETPHFEVIRIRDG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + E ++ ++ I + E + + + K Sbjct: 491 EEQEMLSYLL-----PKKLEALREAESKEAPVVNIAPKKREEPVLQGFSAPTQAAPVAK- 544 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSI 656 + ++ A G++S Sbjct: 545 -AQPEKKAEAKTEEKPGIISRFFKA 568 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 +RHGFLP EI +Y YQ + + L + + + + Sbjct: 62 ADRHGFLPLKEIAKEYFPQGYTYQGRPNIKDVLKEGQEVIVQVEKEERGNK 112 >gi|54308379|ref|YP_129399.1| putative ribonuclease E [Photobacterium profundum SS9] gi|46912807|emb|CAG19597.1| Putative ribonuclease E [Photobacterium profundum SS9] Length = 1100 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 215/685 (31%), Positives = 323/685 (47%), Gaps = 61/685 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D S Sbjct: 12 EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLELPKGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W V+E A ++ AP L+++E N+I RAIRD +DI EI++ K + A++ +KL+ P Sbjct: 191 WSAVKEAADSNSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRAREHIKLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA QTNLEAA+E+ARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETAFQTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ VC C G G +R S++LSILR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ V YLLN+KR ++ E V + +V E+ F + + Sbjct: 431 LKDNSAQVLAIVPVAVASYLLNEKRRSVQHIEKFHTVRVVIVPNAEMETPHFEVLRIREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK----------------------- 608 +++ +A + E Q+ + + Sbjct: 491 DQKDTLSYQMPKVIEAIKEAEAAEAPQQERVIKKHEEPVLQGFASPKTPAPVVAVKPKPA 550 Query: 609 ---------------------------SESLEDIQDNIVSEESTGVIRKRRR-RRRRRRP 640 S S E + + V E+ RR R+ RR Sbjct: 551 APAKAVAAAEAKPGLFNRLFSALTNLFSASTEQVPEKKVEEKQDNRNDNRRGDRQGNRRN 610 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEP----SDITNHNLLENGAHGFTENYDVSIPP 696 T +D D S N D D S Sbjct: 611 DTRRNDTRRNKDSSRRNNRQDSDRDNSETSGEQRQQRQQRPRRNEKPQHDKTAKQRSPRS 670 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKR 721 + + + ++ + Sbjct: 671 EDKRQPRKDDVQAPKAPRRQDEQQP 695 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP E+ DY YQ + ++ L + + + + Sbjct: 62 SERHGFLPLKEVARDYFPANYTYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112 >gi|300704631|ref|YP_003746234.1| ribonuclease e [Ralstonia solanacearum CFBP2957] gi|299072295|emb|CBJ43628.1| Ribonuclease E [Ralstonia solanacearum CFBP2957] Length = 1018 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 211/693 (30%), Positives = 320/693 (46%), Gaps = 70/693 (10%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V A + AP L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 KAVDGAASENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALV++DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 -------------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEA----------- 602 +T + ++ P + ++ + ++ Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAVKPRQEAAVKGITPEQPAPVSVPRAERP 550 Query: 603 -----------------------------------LLPIPKSESLEDIQDNIVSEESTGV 627 P+ + + S G Sbjct: 551 ARAEAAPAAAPQASAPVPAQGGFMSWLKSLFGGKPAEPVVAAPVETPKRAEDGSRRDRGN 610 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++R R +R + + Q + E Sbjct: 611 RQERGGRSGQRGERGERSERQGQQGGRDGQRQGREGSRNEAREGQAQREGQREGQRESQR 670 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 N D + P T + E+ + ++ R + Sbjct: 671 GNRDRNRQPAETTDRETVEARQPQQGQEARDGQ 703 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110 >gi|146340471|ref|YP_001205519.1| putative ribonuclease E [Bradyrhizobium sp. ORS278] gi|146193277|emb|CAL77293.1| putative ribonuclease E [Bradyrhizobium sp. ORS278] Length = 1071 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 276/471 (58%), Positives = 357/471 (75%), Gaps = 3/471 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+ Sbjct: 346 EEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 405 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKIT+ DR LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+RLW+ Sbjct: 406 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGANRTKPEIKRDFEYLLRLWET 465 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VR++ L S AP LVYEEG+LIKR++RDLY K+I EI+V+GE GYREA DFMK+LMP+ R Sbjct: 466 VRDMTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEILVAGEAGYREAHDFMKMLMPTNVR 525 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+QY D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGR+TREH Sbjct: 526 AVKQYRDGQPLFSRMGVESQLDAMFTPTVQLRSGGYIVINQTEALVSIDVNSGRATREHH 585 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNRSVE+KL + L++DRAR+ Sbjct: 586 IEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRSVERKLSDCLRQDRARI 645 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LRS+EE L++ Sbjct: 646 QVGRISHFGLLEMSRQRIRASVLESSTEPCAHCGGSGHVRSVSSVALQLLRSLEEALMKG 705 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573 HN++V T ++V LY+LN KR + + E F VS+ V+ + + F I++G V Sbjct: 706 ATHNLVVRTRTEVALYVLNHKRGHLRDLENSFKVSLAVIADPNVSGQQSFIIDRGEQVHT 765 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 L + + + AP E ++ DE + +E + +SEE+ Sbjct: 766 LEAAKALLAAQASAP--PLVAEEIYDDEEAFDVEIESEVETEETEGLSEEA 814 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 99/174 (56%), Gaps = 1/174 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E ++ ++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEERAHREAEEENENRSNRRRNRHRSSRR 120 Query: 121 EEVAPIANFSQ-ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173 E E ++ E + + I E Sbjct: 121 RGSGERVQSEIVEAAESGQTVHAEGHEADHEAHEHHAYAGDDHPDHPHAEIDEH 174 >gi|323526883|ref|YP_004229036.1| Rne/Rng family ribonuclease [Burkholderia sp. CCGE1001] gi|323383885|gb|ADX55976.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1001] Length = 1080 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 207/627 (33%), Positives = 318/627 (50%), Gaps = 11/627 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ +K Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGSAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR+ I + E+RF V++ +V L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + PK E+ S V Sbjct: 491 DDARLDDPRASWKMAEEAAREMESETGYSKRTEEVKPKQEAAVKGITPEKPAPSAPVRPA 550 Query: 631 RRRRRRRRRPATDHHDAGVVS----DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 PA+ + + ++ V+ + + P E G Sbjct: 551 AEPAPVAATPASGGFIGWLKNLFGMQPAAPAPVVPATPEKQARPQRGERQERGERGGDRN 610 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713 + P + E +N Sbjct: 611 RNRRGGAGPRDAAARPEGTNGGRQSQQ 637 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGN 110 >gi|238795958|ref|ZP_04639470.1| Ribonuclease E [Yersinia mollaretii ATCC 43969] gi|238720163|gb|EEQ11967.1| Ribonuclease E [Yersinia mollaretii ATCC 43969] Length = 1138 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 197/629 (31%), Positives = 317/629 (50%), Gaps = 11/629 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + +A E + + P + + + + E + + Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPQEEATIERK--RPEQPALATFSLPTEVPPESTPAPVS 545 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + +T G+ S + + I S + ++P ++ EN + Sbjct: 546 AKPAAAPQTAASTTAEQPGLFSRLLTGLKGIFSSSPEAEVKPVEVEKTETSENRRNDRRN 605 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + + Sbjct: 606 PRRQNNGRKDRGDRTPREGRDNASRDNNG 634 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|33597842|ref|NP_885485.1| ribonuclease E [Bordetella parapertussis 12822] gi|33574271|emb|CAE38603.1| ribonuclease E [Bordetella parapertussis] Length = 1041 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 204/583 (34%), Positives = 305/583 (52%), Gaps = 18/583 (3%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR++ ++ L++ L+VP GM +I RTAG R E++ D YL++L Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQL 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A ++ AP L+Y E +L+ RAIRD + +I EI++ ++ +A FM ++MP Sbjct: 190 WTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y D P+F R IE Q+++ + V LPS G V+I+ TEALV++DVNS RSTR Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTR 309 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME++KN R+VE++L+++L DR Sbjct: 310 GADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDRKNQRAVEQRLRDALHFDR 369 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGL+E+SRQR+R ++ E + C C G G IR S AL +LR ++E Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA I + EAR V++ ++ L +IE+ Sbjct: 430 MKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + ++AP+ D + + P + + Q VS + Sbjct: 490 DPRLEKSKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAA 549 Query: 632 RRRRR----------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDIT 674 + PA + ++ D D E Sbjct: 550 AAATQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDRRGERHGSDR 609 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N + E+ D E + K+ R Sbjct: 610 NRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEAR 652 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110 >gi|118590067|ref|ZP_01547471.1| ribonuclease E [Stappia aggregata IAM 12614] gi|118437564|gb|EAV44201.1| ribonuclease E [Stappia aggregata IAM 12614] Length = 929 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 302/580 (52%), Positives = 381/580 (65%), Gaps = 9/580 (1%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V S + + ++QY IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLAG Sbjct: 218 VESVGAEDAMEEVPERIIPLRKQYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAG 277 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RYSVLMPNT++G ISRKIT P DRK LK+IA L+VP GMGVILRTAGASRTK EIKRD Sbjct: 278 RYSVLMPNTARGGGISRKITQPTDRKRLKKIASELDVPEGMGVILRTAGASRTKAEIKRD 337 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 FEYLMRLW+NVREL L S AP LVYEEG+L+KR+IRDLY KDI+E++V+GE+GYREAKDF Sbjct: 338 FEYLMRLWENVRELTLKSSAPSLVYEEGSLVKRSIRDLYNKDINEVLVAGEEGYREAKDF 397 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 M++LMPS+A+ V+ Y DP P+F R G+E QLD++ +VTL S GY++INQTEALVSIDV Sbjct: 398 MRMLMPSHAKNVQPYRDPSPLFIRYGVEPQLDAMFSPQVTLKSGGYIVINQTEALVSIDV 457 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 NSG+STREH IEDTALQTNLEAAEE+ RQLRLRDLAGLIV+DFIDMEE KNNRSVE+KLK Sbjct: 458 NSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLAGLIVIDFIDMEESKNNRSVERKLK 517 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + LK DRAR+QVG IS+FGLLEMSRQRIR+ VLES+T C +C+G G IRS SVAL +L Sbjct: 518 DCLKNDRARIQVGRISHFGLLEMSRQRIRTGVLESSTTPCPHCQGTGMIRSVESVALHVL 577 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 RSVE+ LL+ +HN+I+ T + V LY+LNQKR+ +V+ E RF + + V + +L+ Sbjct: 578 RSVEDNLLKGASHNLIIRTTTQVALYILNQKRSNLVDLETRFAIDVEVHADDMVNGQLYV 637 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E+G+PV V + Q + D E Q + + + + + + Sbjct: 638 LERGAPVDR-DRVPMPVPAIVQPDTIDIIDEDTEQPDIEEFAQQEDDNDGRRRRRRRKRR 696 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP--------SDITNH 676 ++ R+ + + DA D Q D EP Sbjct: 697 RNGSDNQQDDGESRQASAEADDADSDGDDDQPQEARSGEEDGDDEPRRKRRRGRRGGRRG 756 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + A + E +S+ D Sbjct: 757 RRNGDEAQAEGGAENDGETNGDNREAATSDEQQDDQAGSD 796 Score = 165 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 75/155 (48%), Positives = 99/155 (63%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDAGHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ALL + ++ ++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLAAEAADRQRDDSDGEEKPKRRRRSRAARNE 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155 + ++ + + + + V ++ G Sbjct: 121 ATDSVASDKVEADASDEATEGDEEAVKAADETDGE 155 >gi|253688888|ref|YP_003018078.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755466|gb|ACT13542.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1113 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 212/701 (30%), Positives = 320/701 (45%), Gaps = 75/701 (10%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEHISALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++S+++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAVIVPHDGMQTPHYSVVRVR 490 Query: 570 PVQALVNTGH----------------------------------KVGSDSQAPSYDKNIE 595 + + APS K Sbjct: 491 KGEEKPTLSYLLPQRLETETQQQQDEQTIERKQPEQPALATFTMAEMPAETAPSVAKATP 550 Query: 596 CVWQDEALLP----------------IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + + D D +EE +R RR RR Sbjct: 551 AAAKPAETAQPGLISRFFSALKSAFASEPAVKAADSVDEKKAEEEKSADGQRSERRNSRR 610 Query: 640 PATDHHDAGVVSDVSSIQNV--IDDSFDMYMEPSDITNHNLLENGAHGFTENY------- 690 + D D S N D+ + ++ N + + Sbjct: 611 QGNNRRDRNSRDDRGSRDNREQRDEQRRNKRQNEEVVAENAEKTSSEEQPRREPRAERQR 670 Query: 691 --------DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S + P ++ S+ ++ K T+ RR+ Sbjct: 671 RRQDERRQASSNEAKAQPAIDDSDDNATEQDKPTQVMPRRQ 711 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254521153|ref|ZP_05133208.1| ribonuclease, Rne/Rng family protein [Stenotrophomonas sp. SKA14] gi|219718744|gb|EED37269.1| ribonuclease, Rne/Rng family protein [Stenotrophomonas sp. SKA14] Length = 1086 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 198/501 (39%), Positives = 288/501 (57%), Gaps = 5/501 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D + D+ I ++ + I E S+ +A + Sbjct: 7 QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGGRHGFLP 66 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 LKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LK+ L +P MGVI+RTAG R E++ D +YL+ Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKDALDKLNIPDDMGVIIRTAGVGRDAEELQWDLDYLLN 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W + E AL+ AP L+Y+E LI RA+RD DI EI+V E+ Y A++FM+ +MP Sbjct: 186 VWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAREFMQQVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y+D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 246 QTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L +LK D Sbjct: 306 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLANALKYD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQVG IS FGLLEMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 366 RARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPHYTVTRLRE 485 Query: 571 VQALVNTGHKVGSDSQAPSYD 591 + + Sbjct: 486 NELGEESNKPSYQRGTPRKLP 506 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 62/107 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ + ++D E K+Q K NIY ++ R+EPSL+AAFV+YGG Sbjct: 1 MLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGG 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 61 RHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGN 107 >gi|78485048|ref|YP_390973.1| ribonuclease [Thiomicrospira crunogena XCL-2] gi|78363334|gb|ABB41299.1| RNAse E [Thiomicrospira crunogena XCL-2] Length = 752 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 203/688 (29%), Positives = 329/688 (47%), Gaps = 60/688 (8%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 ++ A+ D D+ + H ++ A I + E S+ +A D + Sbjct: 10 QSEEVRIALVDGQKLYDLDVETPHHQKKKANIYKGTITRIEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + K + I++++K Q ++VQ+ KEERGNKGAA+TT ++LAG Y V+M Sbjct: 70 FKEIAEEYYPDNKSSGRLSIKDILKEGQEVIVQVQKEERGNKGAALTTQITLAGPYVVMM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN K ISR+I + ++ + L +P GMG+I+RTAG ++ E++ YL++ Sbjct: 130 PNNPKAGGISRRIEGEDRSET-RDALQDLNMPEGMGLIIRTAGVGKSTEELQWGVNYLVQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ +++ + AP L+++E +++ AIRD +DI EII+ + + +A+DF++ +MP Sbjct: 189 LWEAIQKASKEKSAPFLIHQESDIVILAIRDYLRQDIGEIIIDDMETFHKARDFVQHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V+ Y+D P+F R +E Q+++ + EVTLPS G ++I+ TEAL SID+NS RST Sbjct: 249 HQVYKVKPYQDTIPLFTRFQVESQIETAYTREVTLPSGGAIVIDITEALTSIDINSSRST 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA TNLEAA EIARQLRLRD+ GL+V+DFIDM ++ R VE K++E++K D Sbjct: 309 KGGDIEETAYHTNLEAACEIARQLRLRDIGGLVVIDFIDMHSNRHQRDVENKMREAVKSD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGLLEMSRQR+R S+ EST VC C G G IR S+ALSILR +EE Sbjct: 369 RARVQIGKISRFGLLEMSRQRLRPSIEESTQMVCPRCNGVGVIRGVQSLALSILRLLEEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + V DV +LLN+KR I+ E R + + +V L + +E+ Sbjct: 429 AMKENTRRVTVQLPVDVATFLLNEKRHQIINIEDRHNLHVLIVPNEHLDTPDYLMERTRS 488 Query: 571 VQALVNTGHKVGSD--SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES---- 624 + + + +++ + ++E + + S E+ Sbjct: 489 GDEMSTDSSYKIKEFIDKETQQKQDLPTIAKEEPAIKNMQPSSPPPAPTPKTEEKPGLFV 548 Query: 625 -------------------------------------------------TGVIRKRRRRR 635 + + Sbjct: 549 RLWKTLFAAEEPEKEEEPQKAGNKGRNNRNNNNRNRNNNNRNRNNRRRPSSENDDNTDKN 608 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 R+ + +N + A TE+ Sbjct: 609 EPRKENKRSDNKASDKPSEPRENPRRRRPRNAQSEKPEVKEDKTTKAASNRTEDSSRPSK 668 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ E + ++++ P K+ RR+ Sbjct: 669 AATSEEAATPDTTNKPTKKEQSDRPRRR 696 >gi|294341012|emb|CAZ89407.1| Ribonuclease E (RNase E) [Thiomonas sp. 3As] Length = 1009 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 199/517 (38%), Positives = 287/517 (55%), Gaps = 6/517 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 ++ A+ D D+ I + I E S+ + D Sbjct: 10 QSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYGEERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q IQ+VI Q LLVQ+ KEERGNKGAA+TT +SLAGRY VLM Sbjct: 70 FKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I ++ L+E L+ P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGEDRQE-LRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW VR+ + L+Y+E +L+ RAIRD + DI EI++ E + +A+ FM +MP Sbjct: 189 LWSAVRDASETQKGAFLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LP+ G ++I+ TEALV++DVNS RST Sbjct: 249 DTVDRVKRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R + IEDTAL+TNLEAA+E+ARQ+RLRDL GLIVVDFIDMEE +N R+VE +L++++++D Sbjct: 309 RGNAIEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQV IS FGLLE+SRQR+R ++ E C C G G+IR S AL ILR ++E Sbjct: 369 RARVQVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + V +V +LLN+KRA I + E R +S+ ++ L + +E+ Sbjct: 429 AMKEGTAAVHVQVPVEVASFLLNEKRAEITKIELRQRLSVLLIPNKHLDTPNYKLERLKH 488 Query: 571 VQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 L N +A + Sbjct: 489 DDPRLDNLPTSYKMADEAEEDTAITRREKEQRPRQEA 525 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLFNATQSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI Y++ S QA +++ + G+ Sbjct: 62 EERHGFLPFKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGN 110 >gi|37526731|ref|NP_930075.1| ribonuclease E [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786163|emb|CAE15215.1| ribonuclease E (RNase E) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1034 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 199/635 (31%), Positives = 313/635 (49%), Gaps = 18/635 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPNNYHPHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LEVP GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLEVPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A N AP L+++E N+I RA RD DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAENRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLARQHITALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G V+I+ TEAL +ID+NS R+T Sbjct: 251 DFTSKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGAVVIDTTEALTAIDINSSRAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + E R G V + +V ++ F + + Sbjct: 431 ALKENTHQVHAIVPVQIASYLLNEKRQAVSAIERRQGDVGVVIVPNDQMQTPHFSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + P + +L Sbjct: 491 KGEEISALSYLLPQFHEAGAINPQEDVQPERKRPEQPAISAFALPADTPAQQPS------ 544 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K + ++ T G++S + + + +P+ + L + +E Sbjct: 545 HKAKEKKPNHTAQTITEQPGLLSRFLTALKKMFSTEAEEEKPAQKKENKLSGHDNRRSSE 604 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + +++ + R ++ Sbjct: 605 RRNQRRQNSRKDR---DDNNLRDEQRNNRDRDEQR 636 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|332525769|ref|ZP_08401916.1| ribonuclease E [Rubrivivax benzoatilyticus JA2] gi|332109326|gb|EGJ10249.1| ribonuclease E [Rubrivivax benzoatilyticus JA2] Length = 536 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 199/529 (37%), Positives = 289/529 (54%), Gaps = 5/529 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D + + I E S+ + D + Sbjct: 9 EERRLAIVDGQKLLDFETELEGREQRKGNIYKAVITRVEPSLEACFVDYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IQ+V+K Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISRNYFKDGVELKNARIQDVVKEGQELLVQVEKEERGNKGAALTTFVSLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG +SR+I + LKE L+ P GM +I RTAG R+ E++ D Y+++LW Sbjct: 129 NPKGGGVSRRIEGEDREE-LKENLEQLQYPKGMSLIARTAGIGRSAAELQWDLNYMLKLW 187 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 D + + L+Y+E +L+ RAIRD + DI EI++ + Y +A+ FM +MP Sbjct: 188 DAIDGASKAGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYDQAQQFMNHVMPES 247 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D P+F R IE Q+++ V LPS G ++I+ TEALVS+DVNS RSTR Sbjct: 248 ASRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSVDVNSARSTRG 307 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+EIARQ+RLRDL GLIVVDFIDMEE KN R VE++L+++L+ DRA Sbjct: 308 SDIEETAFRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQRLRDALRTDRA 367 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ +IS FGLLE+SRQR+R ++ E C C G G+IR S AL ILR V+E + Sbjct: 368 RVQFSSISKFGLLELSRQRLRPALSEGNHITCPRCNGTGHIRDTESSALQILRMVQEEAM 427 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V +V +LLN+KR I + E + V++ +V L + +E+ Sbjct: 428 KENTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVILVPNKHLETPNYKLERLRHDD 487 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + + P + I + ++ + + + Sbjct: 488 PRLENLQASYTMVEEPDEEVGITRRRDANDKGRSKQEPVIKGVLPDQPA 536 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 65/107 (60%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A +TRVEPSL+A FVDYG + Sbjct: 1 MLINATQPEERRLAIVDGQKLLDFETELEGREQRKGNIYKAVITRVEPSLEACFVDYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI +Y++ + A +++ + + G+ Sbjct: 61 RHGFLPFKEISRNYFKDGVELKNARIQDVVKEGQELLVQVEKEERGN 107 >gi|330861061|emb|CBX71330.1| ribonuclease E [Yersinia enterocolitica W22703] Length = 1157 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P + SL + + V Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPPESAPAAANVK 547 Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + A G+ + + + + + Sbjct: 548 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 607 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +G + D P N++ D + Sbjct: 608 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 646 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|318606163|emb|CBY27661.1| ribonuclease E [Yersinia enterocolitica subsp. palearctica Y11] Length = 1152 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P + SL + + V Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPPESAPAAANVK 547 Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + A G+ + + + + + Sbjct: 548 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 607 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +G + D P N++ D + Sbjct: 608 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 646 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|294664686|ref|ZP_06730019.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605539|gb|EFF48857.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 711 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 207/612 (33%), Positives = 317/612 (51%), Gaps = 9/612 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 189 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS +T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSHAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L+ +LK D Sbjct: 309 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIERRHESPIIVAADEQLHTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + +G + +A L IP + ++ ++ + + Sbjct: 489 NELGEESGKPSYQRGTPRKLPVHAL----TKAQLNIPAAPAVTSVKPSQPAPVREEAPAP 544 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P + G + +E Sbjct: 545 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPIAPAPESTPRPRQNDAGRNNRSERG 604 Query: 691 DVSIPPVSTPEM 702 + + Sbjct: 605 ERGGQRRDGRDA 616 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 110 >gi|187928000|ref|YP_001898487.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J] gi|187724890|gb|ACD26055.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J] Length = 1011 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 200/542 (36%), Positives = 295/542 (54%), Gaps = 5/542 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAYFKDGVDVRGARIQDALSEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E LEVP GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLEVPDGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V A+++ AP L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 KAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALV+IDVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAIDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETAARTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ ++ + + + + P+ E+ + +R Sbjct: 491 PRLDDDKASYKMAEEAAKELEADTAYSTRKETAKPRQEAAVKGITPDQPAPVSVPRAERP 550 Query: 633 RR 634 R Sbjct: 551 VR 552 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKDGVDVRGARIQDALSEGQELIVQVEKEERGN 110 >gi|296136843|ref|YP_003644085.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12] gi|295796965|gb|ADG31755.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12] Length = 998 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 199/517 (38%), Positives = 287/517 (55%), Gaps = 6/517 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 ++ A+ D D+ I + I E S+ + D Sbjct: 10 QSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYGEERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q IQ+VI Q LLVQ+ KEERGNKGAA+TT +SLAGRY VLM Sbjct: 70 FKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I ++ L+E L+ P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGEDRQE-LRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW VR+ + L+Y+E +L+ RAIRD + DI EI++ E + +A+ FM +MP Sbjct: 189 LWSAVRDASETQKGAFLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LP+ G ++I+ TEALV++DVNS RST Sbjct: 249 DTVERVKRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R + IEDTAL+TNLEAA+E+ARQ+RLRDL GLIVVDFIDMEE +N R+VE +L++++++D Sbjct: 309 RGNAIEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQV IS FGLLE+SRQR+R ++ E C C G G+IR S AL ILR ++E Sbjct: 369 RARVQVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + V +V +LLN+KRA I + E R +S+ ++ L + +E+ Sbjct: 429 AMKEGTAAVHVQVPVEVASFLLNEKRAEITKIELRQRLSVLLIPNKHLDTPNYKLERLKH 488 Query: 571 VQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 L N +A + Sbjct: 489 DDPRLDNLPTSYKMADEAEEDTAITRREKEQRPRQEA 525 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLFNATQSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI Y++ S QA +++ + G+ Sbjct: 62 EERHGFLPFKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGN 110 >gi|121611691|ref|YP_999498.1| ribonuclease [Verminephrobacter eiseniae EF01-2] gi|121556331|gb|ABM60480.1| RNAse E [Verminephrobacter eiseniae EF01-2] Length = 1038 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 195/515 (37%), Positives = 284/515 (55%), Gaps = 1/515 (0%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRIEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + P Q I EVIK Q LLVQI KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EIARSYFSPGAAPGQARINEVIKEGQELLVQIEKEERGNKGAALTTFVSLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPGGMSIIARTAGIGRSAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + A + L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP + Sbjct: 191 NAIDGAAQSGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D +F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AARVKRYRDAAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IEDTA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+E+L++DRA Sbjct: 311 GDIEDTATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLREALRQDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ G IS FGL+EMSRQR++ ++ E ++ C C G+G+IR S AL ILR ++E + Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPALAEGSSIPCPRCGGSGHIRDTESSALQILRIIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +V +LLN+KR I + E R VS+ +V L + +E+ Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIEFRQRVSVLMVPNKTLETPNYRLERLKHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ ++ + Q+ P Sbjct: 491 PRLDHIEASYKLAEEVQDPTAVTRRSQEPTNKQTP 525 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTR+EPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ + QA + E + + G+ Sbjct: 62 EDRHGFLPFKEIARSYFSPGAAPGQARINEVIKEGQELLVQIEKEERGN 110 >gi|170700218|ref|ZP_02891234.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10] gi|170134851|gb|EDT03163.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10] Length = 1051 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 196/539 (36%), Positives = 296/539 (54%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + PK E+ S R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPSAAPQR 549 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|300691997|ref|YP_003752992.1| ribonuclease E [Ralstonia solanacearum PSI07] gi|299079057|emb|CBJ51719.1| Ribonuclease E [Ralstonia solanacearum PSI07] Length = 1015 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 198/539 (36%), Positives = 294/539 (54%), Gaps = 5/539 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V A+ + AP L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 KAVDGAAVENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALV++DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 ++ ++ + + + + P+ E+ + +R Sbjct: 491 PRLDDSKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPAPVSVPRPER 549 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110 >gi|261856343|ref|YP_003263626.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2] gi|261836812|gb|ACX96579.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2] Length = 1016 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 197/568 (34%), Positives = 299/568 (52%), Gaps = 5/568 (0%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ + K + I+ +K Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL Sbjct: 71 KEIARSYFDSEAVDDKGRPIIKSALKEGQEIIVQVEKEERGNKGAALTTFVSLAGRYLVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + +SR+I + +K L VP GMG+I+RTAG R E++ D +YL Sbjct: 131 MPNNPRAGGVSRRIEGDDRAE-IKAALSELVVPEGMGLIVRTAGVGREPAELQSDLDYLQ 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 ++WD + + + AP L+Y+E +LI RA+RD DI E+++ +++A DF+ L+ Sbjct: 190 QVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMHQQALDFVNLVS 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P +R Y+D P+F R IE Q++S ++ VTLPS G ++ + EAL ++D+NSGRS Sbjct: 250 PDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEALTAVDINSGRS 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IEDTA TNLEAA+EIARQLRLRDL GL+V+DFIDM + K+ R VE +L+++LK Sbjct: 310 TKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQREVENRLRDALKM 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGLLEMSRQR+ +S+ ES VC C G G+IRS S+ALSI+R + + Sbjct: 370 DRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVESLALSIMRLMID 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ ++ DV YLLN+KR + E E V + V+ I L F IE+ Sbjct: 430 ESMKDQTGRVVAQVPVDVGTYLLNEKRLQLHEIEQNHQVEVLVIPNINLETPHFKIERVR 489 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + ++E P E + + + + + Sbjct: 490 RSDLAESPANSRALIEPLAVAVPDLERA----PRRPAAPVEPIRPVPQSAPRPKVVASVP 545 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 A + G++ V D + + ++ Sbjct: 546 DVATEPAASTSAANIGALGLLKRVIGQIFGAGDKRVEAEVAAPRDPARKASSNRPPRAKD 605 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + P ++ S + K R Sbjct: 606 ENRATPNRLPRAATQTSESEARLEDKRR 633 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E+ +Q K N+Y A +TR+EPSL+A FV+YG Sbjct: 2 KRMLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSD-------RQALLKESNIAQTDSEAVADDV 107 +RHGFLPF EI Y+ D + AL + I + + Sbjct: 62 ADRHGFLPFKEIARSYFDSEAVDDKGRPIIKSALKEGQEIIVQVEKEERGNK 113 >gi|257465575|ref|ZP_05629946.1| ribonuclease E [Actinobacillus minor 202] gi|257451235|gb|EEV25278.1| ribonuclease E [Actinobacillus minor 202] Length = 970 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 204/626 (32%), Positives = 324/626 (51%), Gaps = 15/626 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ ++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKNAAQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ +C C+G G +R S+ALSILR VEE Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLVEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + +V YLLN+KR I E R V++ VV + F + + Sbjct: 431 IKENSAQVHAIVPVEVASYLLNEKRKAISGIEKRHDVNVVVVPSESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + +++ + + ++E + ++ + S E Sbjct: 491 EIVPTLSYDLAKHYHEREEEEHSFHHHVNSDEALVSRNEPVITVETVLNSSELNLQPAPT 550 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 T+ + S + + + + + E + N E + N Sbjct: 551 P---------TEPAKPSLFSRLLAKLKALFATEEKVEEKAKAQPRNPRERRNNRQRNNRQ 601 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 E ++ VK+ R Sbjct: 602 ERKTQTQPDESKAPKVEKAEKVKQPR 627 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|308049099|ref|YP_003912665.1| RNAse E [Ferrimonas balearica DSM 9799] gi|307631289|gb|ADN75591.1| RNAse E [Ferrimonas balearica DSM 9799] Length = 1099 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 206/627 (32%), Positives = 315/627 (50%), Gaps = 9/627 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 ++ A+ D D+ I + ++ A I E S+ +A D + Sbjct: 10 QSEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 155 GSPEDVPK-----KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + I+EVIK Q ++VQ+ KEERG KGAA+TT++SLAG Y VL Sbjct: 70 IKEIAREYFADGAPMAGRPNIKEVIKEGQEVIVQVDKEERGTKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK+ L+VP GMG+I+RTAG + E+ D L+ Sbjct: 130 MPNNPRAGGISRRIEGDERSE-LKDALSKLQVPQGMGLIVRTAGVGKAAEELADDLRVLL 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 WD +++ A + AP L+++E N+I RAIRD DI EI++ + + +AK+ + L+ Sbjct: 189 HHWDAIKQAADSRPAPILIHQESNVIVRAIRDYLRSDIGEILIDHPRIFEQAKEHISLVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P ++QY+ P+F IE Q++S Q EV LPS G ++I+ TEAL ++D+NS R+ Sbjct: 249 PDALSKLKQYQSEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTAVDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++++ Sbjct: 309 TKGGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMGPVRHQREVENRLRDAVRQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGLLEMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 369 DRARVQIGRISRFGLLEMSRQRLRPSLGESAAHLCPRCNGQGTIRGTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I +DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTAQIEAQVPTDVAAFLLNEKRKAIRIIEQRHKVEVYVIPHPHMETPNYTVVRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A Y+ E D+ +L + E E Sbjct: 489 KDDTISEASYSLVERPEATLYEPRKLERQQGDKPVLQGLSAPKAEAEVKAEKPAE-KAPA 547 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + +R+ + P G+++ + + + S + E Sbjct: 548 PAKPKRQPKAEPVA-AAKPGLLARIGAAIKGLFSSEEAEQEQPKEKKSERGGQRRQRGER 606 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + S K Sbjct: 607 GERGERQDRNRRNRKRGERSEQDEQGK 633 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY--QIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y+ P + R + + Q V + Sbjct: 62 AERHGFLPIKEIAREYFADGAPMAGRPNIKEVIKEGQEVIVQVDKEE 108 >gi|90407029|ref|ZP_01215219.1| ribonuclease E [Psychromonas sp. CNPT3] gi|90311900|gb|EAS39995.1| ribonuclease E [Psychromonas sp. CNPT3] Length = 984 Score = 314 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 212/639 (33%), Positives = 312/639 (48%), Gaps = 21/639 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + FK + I+EVIK Q +++QI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEISRNYFPNGYSFKGRPNIKEVIKEGQEVIIQIEKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE L++P GMG+I+RTAG +T E++ D L+ Sbjct: 130 MPNNPRAGGISRRIEGDERTQ-LKEALSHLKLPNGMGLIVRTAGVGKTAEELEWDLNVLV 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E + + AP L++ E N+I R+IRD +DI EI++ K + +AK ++++ Sbjct: 189 NHWHAIDEASKSKSAPFLIHRESNVIVRSIRDYLRRDIGEIVIDHAKTFEQAKKHIEMVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P Y ++ Y+ P+F +E Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDYIDRLKLYQGEIPLFTYYQVESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TR IE+TA TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +++ES+++ Sbjct: 309 TRGGDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPARHQREVENRMRESVRQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGL+EMSRQRIR S+ ES ++VC C G G IR S+AL+ILR +EE Sbjct: 369 DRARIQLGRISRFGLMEMSRQRIRPSLGESASRVCPRCHGQGTIRDNESLALAILRLIEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 L+ I V YLLN+KR++I + E R I ++ L F I++ Sbjct: 429 EGLKENTVQIQATVPVAVAAYLLNEKRSSIFKIEQRHNCEIFIIPDANLLTPHFEIKRTR 488 Query: 570 PVQALV-NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 N E +DE +L Q + S E Sbjct: 489 NDNQTEINYDALQKQHQVYVPNVVKNEQQKEDEPILSGFSRPKNSPKQKHKNSTEKAVQS 548 Query: 629 RKRRRRRR--------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + P T + N + + Sbjct: 549 TQSTEKPTSLLSKIFASIGALFSASPETAEPKVEEKPRPRNNNNRNRNRNRNTRTRNKND 608 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 N ++ EN + + Sbjct: 609 NERSNDDVQKPSEENNSRRVQKPRDNDRIKKAPRKPQAP 647 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 1/110 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQAL-LKESNIAQTDSEAVADDVTHGD 111 +RHGFLP EI +Y+ +S + +KE + + G+ Sbjct: 62 ADRHGFLPLKEISRNYFPNGYSFKGRPNIKEVIKEGQEVIIQIEKEERGN 111 >gi|332162114|ref|YP_004298691.1| ribonuclease E [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666344|gb|ADZ42988.1| ribonuclease E [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1162 Score = 314 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P + SL + + V Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEAAIERKRPEQPALATFSLPTEVPPESAPAAANVK 547 Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + A G+ + + + + + Sbjct: 548 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 607 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +G + D P N++ D + Sbjct: 608 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 646 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|241763828|ref|ZP_04761873.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN] gi|241366872|gb|EER61286.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN] Length = 553 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 190/541 (35%), Positives = 289/541 (53%), Gaps = 6/541 (1%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + P Q I EVIK Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISRSYFTPGVSPNQARINEVIKEGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG RT E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPNGMSIIARTAGIGRTAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + A L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP + Sbjct: 191 NAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D +F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ G IS FGL+EMSRQR++ ++ E ++ C C G+G+IR S AL ILR ++E + Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +V +LLN+KR I + E + V++ +V L + +E+ Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVAVLMVPNKTLETPNYRLERLKHDD 490 Query: 573 -----ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + ++ E + ++ ++ + + + + Sbjct: 491 PRLDHIEASYKLAEEVEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPVAEARPEGAARPL 550 Query: 628 I 628 Sbjct: 551 R 551 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 45/109 (41%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + E + + G+ Sbjct: 62 EDRHGFLPFKEISRSYFTPGVSPNQARINEVIKEGQELLVQVEKEERGN 110 >gi|289668997|ref|ZP_06490072.1| ribonuclease E [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 725 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 210/612 (34%), Positives = 318/612 (51%), Gaps = 9/612 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A D + Sbjct: 7 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAERHGFLP 66 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 LKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L++P MGVI+RTAG R E++ D +YL++ Sbjct: 127 PNSPSAGGVSRRIEGEDRA-ALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQ 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ A L+Y+E LI RA+RD D+ EI+V + Y +A++FMK +MP Sbjct: 186 TWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFMKQVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 246 QSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE KL+ +LK D Sbjct: 306 KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMTSSKHQREVENKLQNALKYD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+EMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 366 RARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 426 AMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEVTRLRE 485 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++G + +A L IP ++ I+ + + Sbjct: 486 NELGEDSGKPSYQRGTPRKLPVHAL----TKAQLNIPAPPAVTSIKPSQPAPVREEAPAP 541 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 T A V V ++ + + P + G + E Sbjct: 542 VAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRNERG 601 Query: 691 DVSIPPVSTPEM 702 + + Sbjct: 602 ERGGQRRDGRDA 613 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 62/107 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q ++ ++E + D G+ Sbjct: 61 RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGN 107 >gi|213580588|ref|ZP_03362414.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 536 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 187/518 (36%), Positives = 284/518 (54%), Gaps = 9/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606 + + + +A + E + P Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPA 528 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|238749678|ref|ZP_04611183.1| Ribonuclease E [Yersinia rohdei ATCC 43380] gi|238712333|gb|EEQ04546.1| Ribonuclease E [Yersinia rohdei ATCC 43380] Length = 1140 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 200/666 (30%), Positives = 313/666 (46%), Gaps = 47/666 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P + SL + + V Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPLEEATLERKRPEQPALATFSLPTEVPPESAPAAETVK 547 Query: 629 RKRRRRRRRRR------------------------------------PATDHHDAGVVSD 652 R + T+ D Sbjct: 548 PVARPQAVASTTATTTTEQPGFFSRLFSGLKGLFGESAAAEVKPVEVEKTETTDTRRNDR 607 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--GFTENYDVSIPPVSTPEMESSNSSSD 710 + + P + ++N +NG +N E + Sbjct: 608 RNPRRQNNGRKERGERTPREGRDNNTRDNGTRDNANRDNSVRDNANRDNTNREDQRRNKR 667 Query: 711 PIVKKT 716 P + T Sbjct: 668 PTQQAT 673 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|251789226|ref|YP_003003947.1| ribonuclease, Rne/Rng family [Dickeya zeae Ech1591] gi|247537847|gb|ACT06468.1| ribonuclease, Rne/Rng family [Dickeya zeae Ech1591] Length = 1058 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 200/649 (30%), Positives = 311/649 (47%), Gaps = 40/649 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGMETPHYSVLRIR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSE------ 622 + + + A S E V + P S ++ DI + Sbjct: 491 KGEEKQTLSYMLPQLLDAESQQVTEEQVAERRAPEQPALVSFTMPDIPPDEAKSTVVTAT 550 Query: 623 -------------------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 ++ K ++ + +D + + Q Sbjct: 551 PPAAAKPAVPERGLFGRFIGALKGIFASSDDGKDQQPADTAKAESDEQEQRPERRNNRRQ 610 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + D EP + + + + + S + + Sbjct: 611 SGRRDRPRDNREPRERDEQRRNKRVQQQNADVENAPVTDTSVQDKAVRD 659 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|253998974|ref|YP_003051037.1| Rne/Rng family ribonuclease [Methylovorus sp. SIP3-4] gi|253985653|gb|ACT50510.1| ribonuclease, Rne/Rng family [Methylovorus sp. SIP3-4] Length = 913 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 214/646 (33%), Positives = 323/646 (50%), Gaps = 18/646 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 ++ A+ D D+ I + + + I E S+ +A + ++ Sbjct: 10 QSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K + + IQ+V+K Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVARSYFQNDSDGRARIQDVLKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I L+++ LEVP GM +I RTAG R E++ D YL++L Sbjct: 130 NNPRGGGVSRRIEGEDR-NELRDLMAQLEVPNGMSIIARTAGIGRNIEELQWDLNYLLQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + + P L+Y+EG+L+ RAIRD + DI EI++ + +A FM +MP Sbjct: 189 WTAIEGASTMQSGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQFMNHVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V+ Y D P+F R IE Q+++ EV LPS G ++I+ TEALVS+DVNSGRST+ Sbjct: 249 NVSRVKLYRDEIPLFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVDVNSGRSTK 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE TA TNLEAA+E+ARQLRLRDL GL+V+DFIDME ++N R VE +L+++L DR Sbjct: 309 GSDIEHTAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLRDALHHDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ G IS FGLLE+SRQR+R S+ ES C C G G+IR S AL ILR +E Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHILRITQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + I V + +LLN+KRA I + E R GV + ++ I + + I + Sbjct: 429 MKENSAIIQVQLPVEAATFLLNEKRAEIHKIEQRSGVQVVLIPNIHMETPNYNISRIRSD 488 Query: 572 QALVNTGHKVGSDSQAPSY-DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 T + P+ + N + +A+ + + ++ E + Sbjct: 489 DVNEETSRASYQMVELPTEGEYNPAAQQEVKAVRAEAAVKGITPASPAPIATEKAVEVPA 548 Query: 631 RR----RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL-------- 678 R + T+ + V + + +N + + + + Sbjct: 549 APSLFGRFKNWLSKITETKEEVVAPETTKQRNDNNRNNRNQPRNARNNRNGRNGERGERP 608 Query: 679 -LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E A E + P E S ++ R + R+ Sbjct: 609 AAERNAERGGERNNERAERGERPANERSERQERGNRQEPRQQEGRE 654 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY +TR+EPSL+AAFV+YG Sbjct: 2 KRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y+Q SD +A +++ + D G+ Sbjct: 62 TDRHGFLPFKEVARSYFQN-DSDGRARIQDVLKEGQELIVQVDKDERGN 109 >gi|71275231|ref|ZP_00651518.1| Ribonuclease E and G [Xylella fastidiosa Dixon] gi|71899548|ref|ZP_00681704.1| Ribonuclease E and G [Xylella fastidiosa Ann-1] gi|170731226|ref|YP_001776659.1| ribonuclease E [Xylella fastidiosa M12] gi|71164040|gb|EAO13755.1| Ribonuclease E and G [Xylella fastidiosa Dixon] gi|71730677|gb|EAO32752.1| Ribonuclease E and G [Xylella fastidiosa Ann-1] gi|167966019|gb|ACA13029.1| ribonuclease E [Xylella fastidiosa M12] Length = 1132 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 210/601 (34%), Positives = 322/601 (53%), Gaps = 16/601 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D + D+ I ++ + I E S+ +A D ++ Sbjct: 10 QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGTDRHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISKDYFQASLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LKE L +P MGVI+RTAG R E++ D ++L+ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKEALEKLNIPNDMGVIIRTAGVGRDTQELQWDLDFLLH 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W + E AL+ AP L+Y+E LI RA+RD + DI EI+V E+ Y++A +FM+ +MP Sbjct: 189 AWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAHEFMRHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y+D P+F R IE Q++ ++ V LPS G ++++QTEAL +IDVNS R+T Sbjct: 249 QSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAIDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + + IE+TA QTNLEAA+EIARQLRLRD+ GL+V+DFIDM K+ R +E +L+ LK D Sbjct: 309 KGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETRLQNCLKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+ IS FGLLEMSRQR+R S+ ES+ VC YC G G +RS S++LSI+R VEE+ Sbjct: 369 RARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLSIIRIVEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V T ++ YLLN+KR I E E R I ++ +L + + + Sbjct: 429 AMKENTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHAPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIR 629 + TG + + ++ L IP + +++ I + Sbjct: 489 NELSEETGKPSYQRNTPRKLPVHAL----TKSQLNIPPAPAVKSITPPQLAPTQEKIPTI 544 Query: 630 KRRRRRRRRRPATDHHD------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R P + + + Q + S ++ + N E Sbjct: 545 REQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRNERNR 604 Query: 684 H 684 Sbjct: 605 R 605 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 TDRHGFLPLKEISKDYFQASLDHHKAGIRELLREGQEIVVQVDKEERGN 110 >gi|261492265|ref|ZP_05988828.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312044|gb|EEY13184.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 491 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 137/566 (24%), Positives = 233/566 (41%), Gaps = 82/566 (14%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 + ++L++ + ETRV ++ + ++EL E E K+ I GNIY +VTRV P +Q+AFVD Sbjct: 3 STELLVNVT-PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDI 61 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G + FL +I + E+ Q + +++ V G + Sbjct: 62 GLEKAAFLHASDIVSH---------TECVDENEKKQFLVKDISELVREGQDIVVQVVKDP 112 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 A + + S S+V + E+ + K Sbjct: 113 IGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLK---------------- 156 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK-GETISRKITNPVDRKNLKEIARGLE 240 S++ P + G I R ++LK+ L+ Sbjct: 157 -------------------------SLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLK 191 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 V E A ++Y E L +R +R Sbjct: 192 RLW-----------------------------RKVLERKGKYSAKSMLYGELALAQRVLR 222 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D I+ + + + Y + ++F+ MP V Y +F G+E + Sbjct: 223 DFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALD 282 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY+II QTEA+ +ID+N+G + T TN+EA + IA QL+LR+L Sbjct: 283 KRVDLKSGGYLIIEQTEAMTTIDINTGTFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLG 342 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+E+++ V + L+E+LK DR + V + GL+EM+R+R R S+ Sbjct: 343 GIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERIL 402 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-I 539 C C+G G +++ +V I+R + + NI V+ DV YL+N++ + Sbjct: 403 CCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALL 462 Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565 E +A G I + + + F + Sbjct: 463 AELQAFIGKKIEIKLEPYYHQEQFDV 488 >gi|91976914|ref|YP_569573.1| ribonuclease [Rhodopseudomonas palustris BisB5] gi|91683370|gb|ABE39672.1| RNAse E [Rhodopseudomonas palustris BisB5] Length = 1043 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 293/602 (48%), Positives = 391/602 (64%), Gaps = 7/602 (1%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 E A+ D ++ A + +E+ + + V S Sbjct: 246 AEDAPFPIAETVSAEHHDDEHDHDAGDDLIDSDADSEGDDEADDEDDDEAEEDIVESVGG 305 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 D + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLM Sbjct: 306 DDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLM 365 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PNT++G ISRKIT+ DR LKE+ + L+VP GMG+ILRTAGA+RTK EIKRDFEYL+R Sbjct: 366 PNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIR 425 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM +LMP Sbjct: 426 MWETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEPGYQEARDFMHMLMP 485 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 S R V+ Y D P+F R G+E QLD++ V L S GY+++NQTEALVSIDVNSGRST Sbjct: 486 SNVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVLNQTEALVSIDVNSGRST 545 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 REH IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VE+KL + L++D Sbjct: 546 REHHIEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQD 605 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+QVG IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE Sbjct: 606 RARIQVGRISHFGLLEMSRQRIRASVLESSTEPCAHCGGSGHVRSVSSVALQLLRGLEEI 665 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGS 569 L++ HN+IV T +DV LY+LNQKR + + E F V+++V+ + + F I++G Sbjct: 666 LMKGATHNLIVRTRNDVALYVLNQKRGHLRDLETGFKVTLSVMADPTVTGQQSFVIDRGE 725 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE------DIQDNIVSEE 623 V L + + A DE+ + E+ E + + + E Sbjct: 726 QVHTLEAAKALLAAQVAAAPAQPEELPYEDDESYEFEAEIETDETVGLTGESAGDSIEAE 785 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 G RKR+RRRRRR + DAG + V + + + S+ + G Sbjct: 786 GEGDARKRKRRRRRRPRTGEARDAGAPREDGEAALVAEGAEAAAEDDSEDGEDSAEGEGE 845 Query: 684 HG 685 Sbjct: 846 AR 847 Score = 170 bits (430), Expect = 7e-40, Method: Composition-based stats. Identities = 74/162 (45%), Positives = 96/162 (59%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E ++ + + H Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEQRSTRRRSRHRSHRR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162 ++ + + + Sbjct: 121 RGNGERVQSEIVDASADQPHVDSADHHHDGQAHPDHERPMHE 162 >gi|33591687|ref|NP_879331.1| ribonuclease E [Bordetella pertussis Tohama I] gi|33571330|emb|CAE44805.1| ribonuclease E [Bordetella pertussis Tohama I] gi|332381082|gb|AEE65929.1| ribonuclease E [Bordetella pertussis CS] Length = 1042 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 202/583 (34%), Positives = 304/583 (52%), Gaps = 18/583 (3%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR++ ++ L++ L+VP GM +I RTAG R E++ D YL++L Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQL 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A ++ AP L+Y E +L+ RAIRD + +I EI++ ++ +A FM +++P Sbjct: 190 WTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVIPD 249 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y D P+F R IE Q+++ + V LPS G V+I+ TEALV++DVNS RSTR Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTR 309 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L DR Sbjct: 310 GADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGL+E+SRQR+R ++ E + C C G G IR S AL +LR ++E Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA I + EAR V++ ++ L +IE+ Sbjct: 430 MKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + ++AP+ D + + P + + Q VS + Sbjct: 490 DPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAA 549 Query: 632 RRRRR----------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDIT 674 + PA + ++ D + E Sbjct: 550 AAAAQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQNRRGERHGSDR 609 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N + E+ D E + K+ R Sbjct: 610 NRHRRNEPRGEHAESGDARHHVRGGRRQEERGERGERGQKEAR 652 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110 >gi|33602744|ref|NP_890304.1| ribonuclease E [Bordetella bronchiseptica RB50] gi|33577186|emb|CAE35743.1| ribonuclease E [Bordetella bronchiseptica RB50] Length = 1046 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 204/583 (34%), Positives = 304/583 (52%), Gaps = 18/583 (3%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR++ ++ L++ L+VP GM +I RTAG R E++ D YL++L Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQL 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A ++ AP L+Y E +L+ RAIRD + +I EI++ ++ +A FM ++MP Sbjct: 190 WTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y D P+F R IE Q+++ + V LPS G V+I+ TEALV++DVNS RSTR Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTR 309 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL+TNLEAAEE+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L DR Sbjct: 310 GADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGL+E+SRQR+R ++ E + C C G G IR S AL +LR ++E Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA I + EAR V++ ++ L +IE+ Sbjct: 430 MKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + ++AP+ D + + P + + Q VS + Sbjct: 490 DPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAA 549 Query: 632 RRRRR----------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDIT 674 + PA + ++ D D E Sbjct: 550 AAATQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDRRGERHGSDR 609 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N + E+ D E + K+ R Sbjct: 610 NRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEAR 652 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110 >gi|332284962|ref|YP_004416873.1| ribonuclease E [Pusillimonas sp. T7-7] gi|330428915|gb|AEC20249.1| ribonuclease E [Pusillimonas sp. T7-7] Length = 962 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 202/583 (34%), Positives = 297/583 (50%), Gaps = 44/583 (7%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R IQE + Q L++Q+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR++ Sbjct: 85 RTARIQEALTEGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E L+ P+GM +I RTAG R+ E++ D YL++LW + A + AP Sbjct: 145 EDRQE-LREAMDQLDTPSGMSIIARTAGIGRSVEELQWDLSYLLQLWTAIDGAARENAAP 203 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ RAIRD Y +I EI++ + + +A FM ++MP + V+ Y D P+ Sbjct: 204 ILIYLESSLVIRAIRDYYSPEIGEILIDTDDIHEQATAFMSVVMPDTVQRVKMYRDDIPL 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ + V LPS G V+I+ TEALV+IDVNS RSTR IE+TA++TNLE Sbjct: 264 FSRFQIEHQIETAYSRTVQLPSGGSVVIDHTEALVAIDVNSARSTRGSDIEETAMRTNLE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+E+ARQLRLRDL GLIV+DFIDMEE KN R+VE++L+++L DRARVQ+G IS FGL+ Sbjct: 324 AADEVARQLRLRDLGGLIVIDFIDMEEGKNQRAVEQRLRDALHFDRARVQMGKISRFGLM 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R ++ E + C C G G +R S AL +LR ++E ++ + Sbjct: 384 ELSRQRLRPALNEGSHITCPRCNGTGVVRDAESSALHVLRLLQEEAMKEGTAALHAQVPV 443 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +LLN+KRA I + EAR V++ ++ L +IE+ + Sbjct: 444 DVATFLLNEKRADISKIEARLKVNLILIPNKNLETPHHHIERLRHDDPRLEESKSSIELV 503 Query: 586 QAPSYDKNIECVWQDEALLPIPKS------------------------------------ 609 P E P++ Sbjct: 504 SQPEEQLTWAASKDQETKSSRPEALVKGITPAQPAPISAKTSSASTTAAQGPGLLKRLIN 563 Query: 610 -------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++++ S + G K R RR + + V Sbjct: 564 WLTGTNTPTVKEEPKTETSSKPQGGRGKNSRHGERRERSQGDRNNRNRRGERRHDAVEGK 623 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 S + E+ + + + ST E S Sbjct: 624 SDETQAPRGRRQQSQQHEDSSPAGSNTAARAQNGESTETAEGS 666 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 40/109 (36%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++E+ + + G+ Sbjct: 62 EDRHGFLPFKEVARSYFKEGVDVRTARIQEALTEGQELIIQVEKEERGN 110 >gi|168822630|ref|ZP_02834630.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341036|gb|EDZ27800.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086375|emb|CBY96148.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1058 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 194/600 (32%), Positives = 304/600 (50%), Gaps = 16/600 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684 ++ AT G+ S + + + P ++ Sbjct: 551 ---ATAKKDNVAATQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254360790|ref|ZP_04976938.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Mannheimia haemolytica PHL213] gi|261494486|ref|ZP_05990972.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091360|gb|EDN73334.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Mannheimia haemolytica PHL213] gi|261309870|gb|EEY11087.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Mannheimia haemolytica serotype A2 str. OVINE] Length = 491 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 137/566 (24%), Positives = 233/566 (41%), Gaps = 82/566 (14%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 + ++L++ + ETRV ++ + ++EL E E K+ I GNIY +VTRV P +Q+AFVD Sbjct: 3 STELLVNVT-PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDI 61 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G + FL +I + E+ Q + +++ V G + Sbjct: 62 GLEKAAFLHASDIVSH---------TECVDENEKKQFLVKDISELVREGQDIVVQVVKDP 112 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 A + + S S+V + E+ + K Sbjct: 113 IGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLK---------------- 156 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK-GETISRKITNPVDRKNLKEIARGLE 240 S++ P + G I R ++LK+ L+ Sbjct: 157 -------------------------SLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLK 191 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 V E A ++Y E L +R +R Sbjct: 192 RLW-----------------------------RKVLERKGKYSAKSMLYGELALAQRVLR 222 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D I+ + + + Y + ++F+ MP V Y +F G+E + Sbjct: 223 DFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALD 282 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY+II QTEA+ +ID+N+G + T TN+EA + IA QL+LR+L Sbjct: 283 KRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLG 342 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+E+++ V + L+E+LK DR + V + GL+EM+R+R R S+ Sbjct: 343 GIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERIL 402 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-I 539 C C+G G +++ +V I+R + + NI V+ DV YL+N++ + Sbjct: 403 CCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALL 462 Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565 E +A G I + + + F + Sbjct: 463 AELQAFIGKKIEIKLEPYYHQEQFDV 488 >gi|123441933|ref|YP_001005916.1| ribonuclease E [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088894|emb|CAL11701.1| ribonuclease E [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1176 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 196/640 (30%), Positives = 310/640 (48%), Gaps = 18/640 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P + SL + + V Sbjct: 491 KGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPPESAPAAANVK 550 Query: 629 RKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + A G+ + + + + + Sbjct: 551 PTAAPQAATAAVAEQPGFLSRLFSGLKGLFGGSTETEVKPVEVEKTETNENRRNDRRNPR 610 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +G + D P N++ D + Sbjct: 611 RQNNGRKDRGDR-TPREGRDNSSRDNNARDNSTRDNGNRD 649 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|91793654|ref|YP_563305.1| ribonuclease [Shewanella denitrificans OS217] gi|91715656|gb|ABE55582.1| RNAse E [Shewanella denitrificans OS217] Length = 1102 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 205/637 (32%), Positives = 314/637 (49%), Gaps = 17/637 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV++ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVQEGQQVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVP GMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPNGMGLIVRTAGVGKEANELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 WD ++E + + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 189 HHWDAIQEASQSQNAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIGLVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERVKLYESEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G +RS S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTVRSTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R GV + ++ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEERHGVEVYIIPDEHMKTPDYRVVRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + +K + Y+ E + L + + Sbjct: 489 TDDEMTESSYKRVEAPLSKLYEPRKLERAAAPQPALKGFAAPQKAPDAPVKATPVVQSTQ 548 Query: 629 RKRRRR----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 R + S+ N D + + + Sbjct: 549 PGLVTRIIAGISALFSSPSKSAEPKAETKSTASESRPANNTRPRRSDGRSDSRNDNRRSR 608 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 ++ + + + + + D K+ Sbjct: 609 NDSDSRNRNDADKNKDTRGRNKKTDKERNVRDADDKR 645 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 62 ADRHGFLPLKEIAREYF 78 Score = 38.0 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 40/143 (27%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 +V S+S + ++ + + + D+ + G +RR Sbjct: 773 RKEKAEQVTSESSDEASAPSVATAEIPASDAGTVEPKQAVDVNAEQDDDAKEGRDGQRRS 832 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 RR R D +S V ++ + +D N + + + Sbjct: 833 RRSPRHLRAAGQRRRRDEDDTSQGAVFSSVDELEKQLNDEQNAIAAQKLNGEAQQAAPSA 892 Query: 694 IPPVSTPEMESSNSSSDPIVKKT 716 + ++ +D T Sbjct: 893 VEQAEVSNAANNIEINDKAEAAT 915 >gi|299067007|emb|CBJ38202.1| Ribonuclease E [Ralstonia solanacearum CMR15] Length = 1029 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 198/542 (36%), Positives = 295/542 (54%), Gaps = 5/542 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V A+ + AP L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 KAVDGAAVENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALV++DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAALHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ ++ + + + + P+ E+ + +R Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKETVKPRQEAAVKGITPEQPAPVSVPRAERP 550 Query: 633 RR 634 R Sbjct: 551 AR 552 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGN 110 >gi|207725238|ref|YP_002255634.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum MolK2] gi|206590472|emb|CAQ37434.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum MolK2] Length = 1013 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 198/539 (36%), Positives = 295/539 (54%), Gaps = 5/539 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V A+++ AP L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 KAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALV++DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 ++ ++ + + + + P+ E+ + +R Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPAPVSVPRAER 549 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110 >gi|110598301|ref|ZP_01386576.1| ribonuclease, Rne/Rng family [Chlorobium ferrooxidans DSM 13031] gi|110340109|gb|EAT58609.1| ribonuclease, Rne/Rng family [Chlorobium ferrooxidans DSM 13031] Length = 535 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 151/537 (28%), Positives = 264/537 (49%), Gaps = 23/537 (4%) Query: 30 FESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQAL 89 E ++ G+IYL +V +V L+AAFVD G GFL F ++ D +AL Sbjct: 3 IERPESRRSIGDIYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVG-----TTSEDYRAL 57 Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 +++ + A D P + ++ + Sbjct: 58 IEDDDDDDAVVGAEDADGDDSLNAAPVQVQPAADQSVKASARSGGKRPSGDEQEKAEK-- 115 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + I +K +LVQ++KE +KG+ +T+ +++AGR+ VL Sbjct: 116 -------------RQSYTQMIAGKLKPNDSILVQVIKEPISSKGSRLTSDITIAGRFMVL 162 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 +P +SR++ +R LK++ R + G G I+RT + + +K+D E L+ Sbjct: 163 LPFGGGQVAVSRRVVVRKERSRLKKLVRSMLPE-GFGAIIRTVAEDQEETLLKQDLEKLL 221 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E ++ P L+++E +I +RD D++EI+ + ++E ++++ Sbjct: 222 AKWTQIEEKLQDAAPPQLIFKEDTIISSVLRDSLTSDVTEIVANSSVIHKETLNYIQWAA 281 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V Y+ P+F GI ++S+ +V L S GY+II TEA+V +DVNSGR Sbjct: 282 PEMVKNVSLYQGKLPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRY 341 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + E+ +L+TNLEAA EI RQLRLRD+ G+IVVDFIDM ++KN + V +K L+ Sbjct: 342 AAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMLDQKNAKKVYDSMKTELRN 401 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRA+ + +S+FG+++++R+RIR S+++ C C G G ++++ + I R + + Sbjct: 402 DRAKSNILPMSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTINQIERWLRK 461 Query: 510 YLLQY--TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 Y LQ+ + ++ VV L N T +++ + + + V L F Sbjct: 462 YALQHPLNFQQLDLYVSPTVVEPLQNSDLKTELKWFLQHLLFVQVKPDESLRSDDFR 518 >gi|242239019|ref|YP_002987200.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech703] gi|242131076|gb|ACS85378.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech703] Length = 1060 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 204/634 (32%), Positives = 313/634 (49%), Gaps = 15/634 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALQLPDGMGLIVRTAGVGKSADALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMETPHYSVLRIR 490 Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLP---IPKSESLEDIQDNIVSE 622 + + + S++Q S + E ++ L IP +E Q + Sbjct: 491 KGEEKQALSYMLPQLLESETQQTSDEPAPERKMPEQPALASFTIPDIPPVESQQPVQETS 550 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 ST R R + G ++ I + + N N Sbjct: 551 NSTTSTGTERPGILGRMIGALKNLFGGAAEADVKPEEIAAVHTEEEQKQERRNGRRQSNR 610 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + + ++ P +T Sbjct: 611 RDRGQRDNREPRERDEQRRAKRAQQAAAPEPTET 644 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|75675912|ref|YP_318333.1| ribonuclease E and G [Nitrobacter winogradskyi Nb-255] gi|74420782|gb|ABA04981.1| RNAse E [Nitrobacter winogradskyi Nb-255] Length = 1059 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 300/613 (48%), Positives = 395/613 (64%), Gaps = 9/613 (1%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEE--VAPIANFSQETEEESIISANNDVVSNV 149 E I+ + +E A V ++ EE + + ++ V S Sbjct: 299 EPAISSSPNEDHALGVHASGDHDHDEPHAEEFHGDEVRVEDRADDDGDDDEEEEQVESVG 358 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 D + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VL Sbjct: 359 GDDALEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVL 418 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKIT+ DR LKE+ + L+VP GMGVILRTAGA+RTK EIKRDFEYL+ Sbjct: 419 MPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKPEIKRDFEYLI 478 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 R+W+ VR++ L S AP LVYEEG+LIKR++RDLY K+I EI+V+GE GY EA+ FMK+LM Sbjct: 479 RMWETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYSKEIDEILVAGEAGYHEARGFMKMLM 538 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS AR V+QY D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGRS Sbjct: 539 PSNARAVKQYRDCQPLFSRMGVESQLDAMFLPTVQLRSGGYIVINQTEALVSIDVNSGRS 598 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH I+DTAL+TNLEAAEE+ARQLRLRDLAGLIV+DFIDM+EK++NR+VE+KL E L+ Sbjct: 599 TREHHIKDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRSNRAVERKLSECLRH 658 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+QVG IS+FGLLEMSRQRIR+S+LES+T+ C C G+G++RS SVAL +LRS+EE Sbjct: 659 DRARIQVGRISHFGLLEMSRQRIRASMLESSTEPCPQCGGSGHVRSVPSVALQLLRSLEE 718 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKG 568 L++ HN+IV T +V LY+LNQKR + E F V ++VV + + F I++G Sbjct: 719 VLMKGATHNLIVRTRINVALYVLNQKREHLRALEHSFRVGLSVVADPAIAGQQSFVIDRG 778 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 V L K +Q +Y E V DE L +D + + + Sbjct: 779 EQVHTL--EAAKALLATQLVTYPPQAEDVQDDEPTLDTETETEADDAEVRVDEQAGGETE 836 Query: 629 RK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +RRRRRRR +++ +D+ V V +V + N E+ + Sbjct: 837 GDGRKRRRRRRRERSSETNDSQVSQAVEVPDSVQIAAEFAAARFMIDDVENEGEDSSA-- 894 Query: 687 TENYDVSIPPVST 699 E+ + P Sbjct: 895 QESAAPADQPADE 907 Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 79/177 (44%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA+H EETRVVV+R NRVEE DFES +KQ++GNIYLAKVTRVEPSLQAAF++Y Sbjct: 26 PNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEY 85 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F EIHPDYYQIP +DRQAL++ A ++E ++D + + + Sbjct: 86 GGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEDRSSRRRSRHRNARRR 145 Query: 122 EVAPIANFS-QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR 177 + + E E + A+ +Q+ +Q+ + Sbjct: 146 DHGERVQSAVVENGEHQVAGADGTQSDPSHSDPSHDEFAAGDHLGQQHDVQDHDQPN 202 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 15/187 (8%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA-------L 603 +V I E A F I+ + Q + + Sbjct: 868 SVQIAAEFAAARFMIDDVENEGEDSSAQESAAPADQPADERRPRRRGRRGGRRRRGTNGA 927 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 P+ + ++ + ++ + R + S + + Sbjct: 928 NPVDSASDELNVTSVSEAVDAVADLDSVSLAPEARSEPAESETQPQQQSEESASSPAETG 987 Query: 664 FDMYMEPSDIT-NHNLLENGAHGFTENYDVSIP------PVSTPEMESSNSSSDPI-VKK 715 EP + + ++ S+P STPE + +SD ++ Sbjct: 988 NGTVPEPEKAVCRRSTVREKVSFTSQEEPPSVPVVQGEPEESTPEAQQPPQASDETRPRR 1047 Query: 716 TRWWKRR 722 WW RR Sbjct: 1048 AGWWSRR 1054 >gi|240948236|ref|ZP_04752622.1| ribonuclease E [Actinobacillus minor NM305] gi|240297275|gb|EER47816.1| ribonuclease E [Actinobacillus minor NM305] Length = 973 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 203/626 (32%), Positives = 324/626 (51%), Gaps = 15/626 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSDYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ ++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKNAAQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ +C C+G G +R S+ALSILR VEE Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLVEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + +V YLLN+KR I E R V++ VV + F + + Sbjct: 431 IKENSAQVHAIVPVEVASYLLNEKRKAISGIEKRHDVNVVVVPSESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + +++ + + ++E + ++ + S E Sbjct: 491 EIVPTLSYDLAKHYHEREEEEHSFHHHVNSDEALVSRNEPVITVETVLNSSELNLQPAPT 550 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + + S + + + + + E + N E + N Sbjct: 551 PA---------EPEKPSLFSRLLAKLKALFATEEKVEEKTKAKPRNSRERRNNRQRNNRQ 601 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 E +++ VK+ R Sbjct: 602 ERKAQTQQDESKATKVEKAEKVKQPR 627 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|171317150|ref|ZP_02906352.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5] gi|171097717|gb|EDT42547.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5] Length = 1050 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 195/539 (36%), Positives = 295/539 (54%), Gaps = 7/539 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + PK E+ R Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPGAAPQR 549 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|238783755|ref|ZP_04627774.1| Ribonuclease E [Yersinia bercovieri ATCC 43970] gi|238715306|gb|EEQ07299.1| Ribonuclease E [Yersinia bercovieri ATCC 43970] Length = 1160 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 197/666 (29%), Positives = 317/666 (47%), Gaps = 41/666 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + + P + SL + + Sbjct: 488 KGEEVPSLSYLLPQLHEAEMAQPQEEATIERKRPEQPALATFSLPTEVPPESTPAAASAK 547 Query: 629 RKRRRR--------------------------------RRRRRPATDHHDAGVVSDVSSI 656 + + T+ + + Sbjct: 548 PTAAPQVAATTTTEQPGFFSRLFTGLKGIFATSAEAEVKPVEVEKTEASETRRNDRRNPR 607 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + P + ++ +N + + S N+ D + ++ Sbjct: 608 RQNSGRKDRGDRTPREGRDNASRDNNGRDNANRDNSARDSNSRDNNSRDNNGRDNVNREG 667 Query: 717 RWWKRR 722 R +RR Sbjct: 668 RDDQRR 673 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|90417706|ref|ZP_01225618.1| ribonuclease, Rne/Rng domain protein [Aurantimonas manganoxydans SI85-9A1] gi|90337378|gb|EAS51029.1| ribonuclease, Rne/Rng domain protein [Aurantimonas manganoxydans SI85-9A1] Length = 1014 Score = 313 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 289/604 (47%), Positives = 373/604 (61%), Gaps = 6/604 (0%) Query: 104 ADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKK 163 D+ D + S + E + ++ + + Sbjct: 247 EDEDNGSDRSSRGRRGGRGRRGRTRASGDDENNGDEDGDEEIDQIGSEDAMEEVPVRQAR 306 Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 +RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKI Sbjct: 307 QRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKI 366 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 TN DRK LK++ R L+VP GMG+ILRTAGA+RTK E+KRD+EYLMRLW+ VR + L+S+ Sbjct: 367 TNAADRKRLKDVVRELDVPRGMGIILRTAGANRTKPEVKRDYEYLMRLWETVRTVTLSSI 426 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP LVYEEG+LIKR+IRDLY KDI +I+V+GE GYREAKDFM++LMPS A++V+ Y DP Sbjct: 427 APALVYEEGSLIKRSIRDLYNKDIDQILVAGETGYREAKDFMRMLMPSQAKVVQPYRDPT 486 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 PIF R GIE QLD + Q VTL S GY+IINQTEALV+IDVNSGRST+EH IEDTA QTN Sbjct: 487 PIFVRQGIESQLDKMVQPHVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEDTAYQTN 546 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 +EAAEE+ARQLRLRDLAGLIV+DFIDM+EK+NNR+VEKK+KE LK DRAR+QVG+IS+FG Sbjct: 547 MEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVEKKIKECLKSDRARIQVGSISHFG 606 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 LLEMSRQRIR+SVLEST + C C+G G+IRS SS AL +LR++EE+L ++ H++IV Sbjct: 607 LLEMSRQRIRASVLESTMQTCPVCEGTGHIRSSSSSALHVLRTIEEHLQKHADHDLIVKV 666 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 + LY+LN+KR I E E G+ I + + I G+ Sbjct: 667 PTSTALYVLNEKRQRIEELEHHHGLRIILEADDSAGHQAITIAHGAEAT----KPEITVD 722 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 Q + + + ++ L+ I + + E G R R Sbjct: 723 SGQPDALAASDALDDAADEEAARRSADELDRIAEEKPAAEDKGRA--ERAEEDRNGSDNS 780 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 ++ +D + D + + G E D + + Sbjct: 781 EGGGRRRRRRRRKRSGDEDETVADGQSRDDRSDQDNGDDRDGDAEGDDETDGAHRSTSRT 840 Query: 704 SSNS 707 +S Sbjct: 841 DDDS 844 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 83/160 (51%), Positives = 97/160 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASH EETRVVV+R +RVEE DFESEHKKQ+KGNIYLAKVTRVEPSLQAAFV+ Sbjct: 66 MANKMLIDASHPEETRVVVVRGSRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFVE 125 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++E + E + S Sbjct: 126 YGGNRHGFLAFSEIHPDYYQIPKADRQALIEEDLQRAMEEEEADEPKPTRSRRGSRSKSA 185 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160 + E +E + + + Sbjct: 186 AHSDETVSEKAEIDENGNEVGADAAQGDAHGDETEIHATE 225 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 17/156 (10%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + P + + A P P +E + + Sbjct: 870 ESGQQSGDVAADQAPDAQPMHATATTVMSDQVAATPAPVAEDAPVASPAEPVDAQS---- 925 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 A D+ D V ++ + + P + E ++ Sbjct: 926 ----------EAADNADTAVAAEPAMPALAAEPVATNAPAPVEAQPAAAEETAGAAANDD 975 Query: 690 YDVSIPPVSTPEMESSNSSSD---PIVKKTRWWKRR 722 V+ P S+++ +D ++T WW RR Sbjct: 976 TPVAQEPSDPVVTSSTSNDADAKPEKPRRTGWWARR 1011 >gi|254503804|ref|ZP_05115955.1| ribonuclease, Rne/Rng family protein [Labrenzia alexandrii DFL-11] gi|222439875|gb|EEE46554.1| ribonuclease, Rne/Rng family protein [Labrenzia alexandrii DFL-11] Length = 923 Score = 313 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 295/630 (46%), Positives = 390/630 (61%), Gaps = 5/630 (0%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 SD + + + AQ + + ++ + ++ + ++ Sbjct: 171 SDGEEAAENTADAQAADADAESPSDENEDDAKPARARRRRRRKSDVEAASNDDEGDNGDD 230 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 +V S + + ++QY IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLSLA Sbjct: 231 EVESVGAEDALEEVPERRAPMRKQYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLA 290 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 GRYSVLMPNT++G ISRKIT P DRK LK+IA L+VP GMGVILRTAGASRTK EIKR Sbjct: 291 GRYSVLMPNTARGGGISRKITQPTDRKRLKKIASELDVPEGMGVILRTAGASRTKAEIKR 350 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 DFEYLMRLW+NVREL L S AP LVYEEG+LIKR+IRDLY KDI E+ V+G++GYREAKD Sbjct: 351 DFEYLMRLWENVRELTLKSSAPSLVYEEGSLIKRSIRDLYNKDIDEVSVAGDEGYREAKD 410 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 FM++LMPS+A+ V+ Y DP P+F R G+E QLD++ VTL S GY++INQTEALVSID Sbjct: 411 FMRMLMPSHAKNVQPYRDPSPLFIRYGVEPQLDAMFSPHVTLKSGGYIVINQTEALVSID 470 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNSG+STREH IEDTALQTNLEAAEE+ RQLRLRDLAGL+V+DFIDMEE KNNRSVE+KL Sbjct: 471 VNSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLAGLVVIDFIDMEESKNNRSVERKL 530 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 K+ LK DRAR+QVG IS+FGLLEMSRQR+R+ VLES+T C +C+G G IRS SVAL + Sbjct: 531 KDCLKNDRARIQVGRISHFGLLEMSRQRLRTGVLESSTTPCPHCQGTGMIRSVESVALHV 590 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LRS+E+ LL+ H++I+ T ++V LY+LNQKR+ + + E RF V I V + +L+ Sbjct: 591 LRSIEDNLLKGATHDLIIRTSAEVALYILNQKRSNLFDLEVRFLVGIEVQADHMVNGQLY 650 Query: 564 YIEKGS--PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +E+G+ V D + + V +++A + + + Sbjct: 651 VLERGALIDRDRQPVPTATVQPDMIDIIDEDTEQPVAEEQAQQDQDEDNNDRRRKRRRKR 710 Query: 622 EESTGVIRKRRRRRRRRRPAT---DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + T + +A + + + + + Sbjct: 711 RRGGSDAQNEETLEANADSETVDDEQAEARGADEDNDDEPRRKRRRGRRGGRRGRRDDEM 770 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + D S PVS ++ + Sbjct: 771 ENRADDANGSDGDSSDAPVSDENPDAEQTE 800 Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats. Identities = 78/155 (50%), Positives = 100/155 (64%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDAGHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ALL + E ++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLAAEAAERQPDETEQEEKPKRRRRSRAARNE 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155 + +A+ ET +E ++ + + + Sbjct: 121 SDADTVASEKVETPDEDEEGSDPEANAGSDSETTE 155 Score = 38.0 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 13/154 (8%), Positives = 40/154 (25%), Gaps = 3/154 (1%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ +A + S + + + + ++ + + Sbjct: 767 DDEMENRADDANGSDGDSSDAPVSDENPDAEQTEVTAASDAPVSETVAAADTGNLEQPVN 826 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT---EN 689 ++ + ++ + + + + + + E T E Sbjct: 827 GVDASASEPSEAVEPSQAAEPEAAVSTEEPVAQIDKAEEIVIETPVSEAPVEAETVAEEP 886 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S P E+S K+ WW+R + Sbjct: 887 VKPSAPAEPVVTSETSGEEEADKPKRGGWWQRGR 920 >gi|52842507|ref|YP_096306.1| ribonuclease E [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629618|gb|AAU28359.1| ribonuclease E [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 667 Score = 313 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 205/647 (31%), Positives = 318/647 (49%), Gaps = 27/647 (4%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R AL+K + + D E + G++ E ++ + + Sbjct: 19 RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 78 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + ++ P I +I+ Q LL+Q+ KEERGNKGAA+TT+++LAG Sbjct: 79 PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 131 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMPN ISR+I + L+E L +P MG+I+RTAG ++ E++ D Sbjct: 132 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 190 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L W +++E + +AP L+++EG++I R+IRD K ISEII+ + Y +AK ++ Sbjct: 191 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 250 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + + P + ++ Y P+F IE Q+++ +Q +V LPS G ++I++TEALVSID+N Sbjct: 251 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 310 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 S ++T IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM KN R VE +LKE Sbjct: 311 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 370 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+ ++C C+G G +RS S LSI R Sbjct: 371 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 430 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +EE L+ I V ++ +++N+KR I + E R GVS+ V+ + + I Sbjct: 431 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 490 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + Q + + E V DE + + + Sbjct: 491 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 550 Query: 624 ---------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + +K R + + + A+ G S N S Sbjct: 551 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHASSKSSGGDKRQQGSNANRRRRSGGGQQ 610 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 S + H + + + + + S + + KK Sbjct: 611 RSSSGNTNAAA--STHQQRKKSNANQQSHGSQQSNRSIPAKNEGNKK 655 >gi|183599500|ref|ZP_02960993.1| hypothetical protein PROSTU_02978 [Providencia stuartii ATCC 25827] gi|188021746|gb|EDU59786.1| hypothetical protein PROSTU_02978 [Providencia stuartii ATCC 25827] Length = 1083 Score = 313 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 202/631 (32%), Positives = 324/631 (51%), Gaps = 10/631 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + E P + + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ +++D Y +R Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLEIPDGMGLIVRTAGVGKSAESLQQDLLYRLRH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330 W+ +++ A N AP L+++E N+I RA RD DI EI++ K A++ ++ + Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIEAIGRG 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LS+LR +EE Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSVLRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + E E R V + +V ++ F++ + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVSEIETRQRNVRVVIVPNDQMQTPHFHVIRIR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + + + + +A P + S +Q+ + + Sbjct: 491 KGEEVNTLSYNLAHYHETETLNSTEDPAAERKA--PEQPAISAFALQEPVEQPVTVKSKE 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + R ++ S V+ + + + + Sbjct: 549 NKARTETPKQGVKVDAQPSFFSKVAEFFKKLFAGEEEKVAEKPAEKNRQNSGNDKRRNNE 608 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + E+S++ + + R + Sbjct: 609 RRNNRRNNRRDRDENSDNRENRDNRSNRNAQ 639 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|148825306|ref|YP_001290059.1| ribonuclease E [Haemophilus influenzae PittEE] gi|148715466|gb|ABQ97676.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittEE] Length = 935 Score = 313 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 193/617 (31%), Positives = 317/617 (51%), Gaps = 17/617 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + + V ++ + + ++E + E+ +R Sbjct: 491 EEVNELSYNLAKIHCEKDENTEESLVSRNIETTAVIEQPAVESAAVALSISEAAPTPVER 550 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + ++ +++ + + + + +P + + Sbjct: 551 K-----------SNEPSLLAKIIAKIKGLFTAKSEENKPKNNRTSRNSNRNQRRSQDRRT 599 Query: 692 VSIPPVSTPEMESSNSS 708 P E E + Sbjct: 600 SRRPRSENNEAERTEEQ 616 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|319763868|ref|YP_004127805.1| ribonuclease, rne/rng family [Alicycliphilus denitrificans BC] gi|317118429|gb|ADV00918.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans BC] Length = 1022 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 184/534 (34%), Positives = 286/534 (53%), Gaps = 6/534 (1%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + Q I +VI+ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + A L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM+ +MP + Sbjct: 191 NAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAQQFMQHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AARVKRYRDDAPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ GAIS FGL+EMSRQR++ S+ E C C G G++R +L +LR ++E + Sbjct: 371 RVQFGAISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +V +LLN+KR I + E + V++ ++ L + +E+ Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVVLIPNKTLETPHYKLERLKHDD 490 Query: 573 ALVNT-----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + Q ++ E + ++ ++ + + Sbjct: 491 PRLENLDASYKLADVVEEQTRVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPE 544 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGN 110 >gi|91784731|ref|YP_559937.1| ribonuclease E [Burkholderia xenovorans LB400] gi|91688685|gb|ABE31885.1| RNAse E [Burkholderia xenovorans LB400] Length = 1096 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 195/531 (36%), Positives = 296/531 (55%), Gaps = 7/531 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KRA I + E+RF V++ ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 A ++ ++ + + E + PK E+ Sbjct: 491 DDARLDEPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEKP 541 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|168237269|ref|ZP_02662327.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737331|ref|YP_002114184.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712833|gb|ACF92054.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289857|gb|EDY29218.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 1067 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|187924898|ref|YP_001896540.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN] gi|187716092|gb|ACD17316.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN] Length = 1097 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 195/531 (36%), Positives = 296/531 (55%), Gaps = 7/531 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KRA I + E+RF V++ ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 A ++ ++ + + E + PK E+ Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEKP 541 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|115524985|ref|YP_781896.1| ribonuclease [Rhodopseudomonas palustris BisA53] gi|115518932|gb|ABJ06916.1| RNAse E [Rhodopseudomonas palustris BisA53] Length = 1016 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 274/539 (50%), Positives = 367/539 (68%), Gaps = 11/539 (2%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + + +RQY IQEVIK RQ++LVQ+VKEERGNKGAA+TTYLSLAGRY+VLMPNT+ Sbjct: 289 EEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 348 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKIT+ DR LKE+ + L+VP GMG+ILRTAGA+RTK EIKRDFEYL+R+W+ Sbjct: 349 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIRMWET 408 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VR++ L S AP LVYEEG+LIKR++RDLY K+I EI V+GE GY+EA+DFM++LMPS R Sbjct: 409 VRDMTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMQMLMPSNVR 468 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+QY D P+F R G+E QLD++ V L S GY++INQTEALVSIDVNSGRSTREH Sbjct: 469 AVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 528 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IEDTAL+TN+EAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNR+VE+K+ + L++DRAR+ Sbjct: 529 IEDTALKTNIEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKISDCLRQDRARI 588 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 Q+G IS+FGLLEMSRQRIR+SVLES+T+ C +C G+G++RS SSVAL +LR +EE L++ Sbjct: 589 QIGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEILMKG 648 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQA 573 HN++V T +DV LY+LN KR + + E F VS++V+ + + F I++G V Sbjct: 649 ATHNLMVRTRTDVALYVLNHKRGHLRDLENSFKVSLSVLADPTVSGQQSFVIDRGEQVHT 708 Query: 574 LVNTGHKVGSDSQAPSYDKNI----------ECVWQDEALLPIPKSESLEDIQDNIVSEE 623 L + + A + + DE + ++ + E+ D + Sbjct: 709 LEAAKATMAAQLAASPAAVDEPYDDEEFEFEPEIETDETVGLADEATAGENESDADGRKR 768 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 R+ R R ++ +++ ID + + E Sbjct: 769 KRRRRRRGRSSDTRDGAPVREEGDFSIAPINAADATIDGDEGTDEGGDETEDEARTETN 827 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 73/131 (55%), Positives = 92/131 (70%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M NKMLIDA+H EETRVVV+R NRVEE DFE+ +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 5 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 64 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQAL++ A + E +++ ++ + + Sbjct: 65 YGGNRHGFLAFSEIHPDYYQIPMADRQALIEADERAHREEEEESENRSNRRRSRHRNSRR 124 Query: 121 EEVAPIANFSQ 131 Sbjct: 125 RGNGERMQSEI 135 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 24/157 (15%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P + SQ PS E + + + ++E +E+ + ++++ Sbjct: 876 EPREQASEEPSTEFVASQ-PSVPSREEPASEPQPSVIADRAERVEEPRAEPAQDDTSSES 934 Query: 629 RKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 K RRR R + +T+ A V +DV S Sbjct: 935 GKPRRRSTVREKVSFSTEPVAASVGADVPSPT--------------------PEPASTEA 974 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T+ PE + +S ++ WW RR Sbjct: 975 STDAAAPVEAVAPEPEPAADAPASASEPRRAGWWSRR 1011 >gi|153803670|ref|ZP_01958256.1| ribonuclease E [Vibrio cholerae MZO-3] gi|124120794|gb|EAY39537.1| ribonuclease E [Vibrio cholerae MZO-3] Length = 619 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 196/590 (33%), Positives = 305/590 (51%), Gaps = 12/590 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + E ++ + + E + + Sbjct: 488 EEQDVLSYL-----IPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTP 542 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + +P + S + I F E + + + Sbjct: 543 KPKAEP-QPVAEVQQPAQPGFFSRVFKAIASLFSETPEAAKVEAPVTQNS 591 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|90579092|ref|ZP_01234902.1| Putative ribonuclease E [Vibrio angustum S14] gi|90439925|gb|EAS65106.1| Putative ribonuclease E [Vibrio angustum S14] Length = 1094 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 202/556 (36%), Positives = 305/556 (54%), Gaps = 12/556 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK L++P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ V+E A + AP L+++E N+I RAIRD +DI EI++ K + A+D +KL+ P Sbjct: 191 WNAVKEAADSQSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q+DS Q EV LPS G V+I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ VC C G G +R S++LSILR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ V YLLN+KR ++ E GV + +V ++ F + + Sbjct: 431 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------ESLEDIQDNIVSEEST 625 + + + +A + IE + + + + + + T Sbjct: 491 EEQDTLSYHIPKTLEALKEAEAIEAPQPERVIKKREEPVLQGFTAPKQPAPVAKPAAKPT 550 Query: 626 GVIRKRRRRRRRRRPA 641 + + ++P Sbjct: 551 PKVTAKPATESTKKPG 566 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP E+ DY YQ + ++ L + + + + Sbjct: 62 AERHGFLPLKEVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112 >gi|62179702|ref|YP_216119.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224584311|ref|YP_002638109.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127335|gb|AAX65038.1| RNase E [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468838|gb|ACN46668.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714172|gb|EFZ05743.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1068 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|52425677|ref|YP_088814.1| CafA protein [Mannheimia succiniciproducens MBEL55E] gi|52307729|gb|AAU38229.1| CafA protein [Mannheimia succiniciproducens MBEL55E] Length = 960 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 201/629 (31%), Positives = 326/629 (51%), Gaps = 8/629 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPDDYVYQGRPNIKDIIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K Y +AK +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + ++ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FISRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQRI S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRISPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ YLLN+KR I + E R V I VV E+ F + + Sbjct: 431 LKENTKQVHTVVPVNIASYLLNEKRKAIHDIEKRHNVEILVVPNKEMETPHFSVFRVRDG 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + Q ++ + + + LE ++ E I Sbjct: 491 EEINTLSYNLVKVYEEQETTFIADEPFTTRVTETAAVTTENVLESAALSMTISEPAPTIE 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 ++ + G+ + ++ ++++ + N Sbjct: 551 VKKEEQPSLFVRIVAAIKGLFASEPKVEEKVEEAPQPNTRNRRNNQEHRNSRRNRNERNN 610 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + P + E S ++ + R Sbjct: 611 RGNNEEPADKVQSEKSAEKAERPARSERT 639 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|91775674|ref|YP_545430.1| ribonuclease E [Methylobacillus flagellatus KT] gi|91709661|gb|ABE49589.1| RNAse E [Methylobacillus flagellatus KT] Length = 904 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 203/573 (35%), Positives = 295/573 (51%), Gaps = 32/573 (5%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R IQ+V+K Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 86 RSPRIQDVLKEGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRIEG 145 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 L++ L+VP+GM +I RTAG R+ E++ D YL++LW V + P Sbjct: 146 EER-NELRDTMAQLQVPSGMSIIARTAGIGRSVEELQWDLNYLLQLWTAVESASTIQSGP 204 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y+EG+L+ RAIRD + DI EI++ Y +A FM +MP+ V+ Y D P+ Sbjct: 205 FLIYQEGSLVIRAIRDYFQPDIGEILIDTPDIYEQAVQFMNHVMPNNVSRVKLYRDEIPL 264 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q++S EV LPS G ++I+ TEALVS+DVNSGRST+ IE TA TNLE Sbjct: 265 FSRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRSTKGSDIEQTAFNTNLE 324 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+E+ARQLRLRDL GL+V+DFIDME ++N R VE +L+E+L DRARVQ G IS FGLL Sbjct: 325 AADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLREALHHDRARVQTGKISRFGLL 384 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R S+ ES C C G G+IR S AL ILR +E ++ + I V Sbjct: 385 ELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHILRITQEEAMKENSAIIQVQLPV 444 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV---- 581 + +LLN+KR+ I + E R GV + ++ I + + I + Sbjct: 445 EAATFLLNEKRSEIHKIEQRMGVQVVLIPNIHMETPNYNILRIRHDDVEETGRASYEMVE 504 Query: 582 -GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK---------R 631 S++ + + + + A+ I + ST ++ + Sbjct: 505 LPSETLETALAQEPKPAKAEAAVKGITPASPAPAAAREKEKPSSTSLLHRFKSWLASVAA 564 Query: 632 RRRRRRRRPATDHHDA-----------------GVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + + T D+ +D + + Sbjct: 565 PKPEVKPQEETQQRDSNRNPRRNNRRNERSASERTGNDRQMQNEQRQEQRKEQRSQQERR 624 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 + A G E + P+++ Sbjct: 625 PQQAEQRAAQGRQERAERPERNERQPKVQQPQP 657 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD ES K+Q K NIY +TR+EPSL+AAFV+YG Sbjct: 2 KRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGVITRIEPSLEAAFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF EI Y+ Sbjct: 62 TDRHGFLPFKEIARSYF 78 >gi|312172071|emb|CBX80328.1| K08300 ribonuclease E [Erwinia amylovora ATCC BAA-2158] Length = 939 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 309/629 (49%), Gaps = 9/629 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSHYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + +A + E + ++ + + E + Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPAPHEVAVVPAV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + + PA+ V VS ++ + +P + E Sbjct: 551 TKAAVKTPA-PASPAQPGLVSRIVSGLKKLFAAPEKPAQQPPQPAVEEKSAEASAPRGER 609 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + N +D + R Sbjct: 610 RNNRRQNNRRDRNGDRNERNDRNERNDRN 638 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|330823868|ref|YP_004387171.1| Rne/Rng family ribonuclease [Alicycliphilus denitrificans K601] gi|329309240|gb|AEB83655.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans K601] Length = 1028 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 183/534 (34%), Positives = 286/534 (53%), Gaps = 6/534 (1%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + Q I +VI+ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + A L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM+ +MP + Sbjct: 191 NAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAQQFMQHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AARVKRYRDDAPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ GAIS FGL+EMSRQR++ S+ E C C G G++R +L +LR ++E + Sbjct: 371 RVQFGAISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +V +LLN+KR I + E + V++ ++ L + +++ Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVVLIPNKTLETPHYKLDRLKHDD 490 Query: 573 ALVNT-----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + Q ++ E + ++ ++ + + Sbjct: 491 PRLENLDASYKLADVVEEQTRVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPE 544 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGN 110 >gi|255067490|ref|ZP_05319345.1| ribonuclease E [Neisseria sicca ATCC 29256] gi|255048285|gb|EET43749.1| ribonuclease E [Neisseria sicca ATCC 29256] Length = 1012 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 205/635 (32%), Positives = 318/635 (50%), Gaps = 7/635 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 12 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 72 FKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 132 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MPS Sbjct: 191 WQAIEEAGKAHHEPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAEFMSYVMPS 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ YED P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 251 NIGRLKLYEDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSIDVNSARATR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 311 GADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 371 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 431 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 490 Query: 572 QALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI-- 628 + + +A P P + + Q E Sbjct: 491 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTVSEQKSGSWW 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + +R + V++V+ + ++ + N + Sbjct: 551 DTFKAWLKRIFGGNTAAEPAPVAEVAEKRTSNGNNRNGNSGNRRANNRRQNPRRNNRHDG 610 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + N +++ + + +R + Sbjct: 611 SKVEVREVADFKDKAADNQAAENETRNAKDNRRSR 645 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 4 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 63 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y+Q Sbjct: 64 TDRHGFLPFKEVSRSYFQ 81 >gi|283833620|ref|ZP_06353361.1| ribonuclease E [Citrobacter youngae ATCC 29220] gi|291071303|gb|EFE09412.1| ribonuclease E [Citrobacter youngae ATCC 29220] Length = 1083 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 190/535 (35%), Positives = 292/535 (54%), Gaps = 9/535 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPASYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + + +A E V + + P + ++ D+ +E Sbjct: 491 KGEETPTLSYLLPKLHEEAMELPSEQEYVERKQPEQPALATFAMPDVPPAPTVQE 545 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|261493498|ref|ZP_05990020.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495851|ref|ZP_05992283.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308478|gb|EEY09749.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310831|gb|EEY12012.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 980 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 204/656 (31%), Positives = 319/656 (48%), Gaps = 35/656 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++I+ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSDYVFNGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ +C C+G G +R S+ALSILR +EE Sbjct: 371 ARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V I VV + F + + Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLREN 490 Query: 572 Q-------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + N Q E V E++L + Sbjct: 491 EITPTLSYDLTKHYEARNEEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPT 550 Query: 619 IVSEES-------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + S + + + + + R + + +N + Sbjct: 551 EPPKPSLLSRLIATIKGWFSEEKVEEKPKPKARNQRDRRQRRERPNRNTKAENQERKTVQ 610 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTRW 718 P++ + E S E+++ + KK R Sbjct: 611 AQATPAEEKPVRSEKKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRV 666 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|308186401|ref|YP_003930532.1| ribonuclease E [Pantoea vagans C9-1] gi|308056911|gb|ADO09083.1| ribonuclease E [Pantoea vagans C9-1] Length = 1136 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 191/542 (35%), Positives = 288/542 (53%), Gaps = 9/542 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALDLPEGMGLIVRTAGVGKSAESLQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A N AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+D+IDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + E + P + + D V E Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPAPVEVEPEVKR 550 Query: 629 RK 630 + Sbjct: 551 TE 552 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|167553026|ref|ZP_02346776.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322414|gb|EDZ10253.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1067 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|307730550|ref|YP_003907774.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003] gi|307585085|gb|ADN58483.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003] Length = 1097 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 197/531 (37%), Positives = 297/531 (55%), Gaps = 7/531 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ +K Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGDDRQE-LRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGTAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR+ I + E+RF V++ +V L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 A ++ ++ + + E + A PK E+ Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRAEDVKPKQEAAVKGITPEKP 541 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGN 110 >gi|89073416|ref|ZP_01159940.1| Putative ribonuclease E [Photobacterium sp. SKA34] gi|89050903|gb|EAR56377.1| Putative ribonuclease E [Photobacterium sp. SKA34] Length = 1094 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 206/588 (35%), Positives = 310/588 (52%), Gaps = 9/588 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK L++P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ V+E A + AP L+++E N+I RAIRD +DI EI++ K + A+D +KL+ P Sbjct: 191 WNAVKEAADSQSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q+DS Q EV LPS G V+I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ VC C G G +R S++LSILR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ V YLLN+KR ++ E GV + +V ++ F + + Sbjct: 431 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +A + IE + + E + + Sbjct: 491 EEQDTLSYHIPKTLEALKEAEAIEIPQPERVIKKRE--EPVLQGFTAPKQPAPVAKPAAK 548 Query: 632 RRRRRRRRPATDH-HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + +P T+ G++S S + + Sbjct: 549 PTPKVAAKPVTESTQKPGLLSRFFSALASFFSGSPEQQQEKPVEAKAE 596 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP E+ DY YQ + ++ L + + + + Sbjct: 62 AERHGFLPLKEVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112 >gi|239994406|ref|ZP_04714930.1| RNase E [Alteromonas macleodii ATCC 27126] Length = 1132 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 215/647 (33%), Positives = 318/647 (49%), Gaps = 21/647 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + KF+ + I++VIK Q ++VQI KEERG KGAA+TT+LSLAG Y VLMP Sbjct: 72 EIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFLSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKESLSKLDLPEGMGLIVRTAGVGKSYEELEWDLKVLLTH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ + +A AP L+++E N+I RAIRD +DI EI++ Y +A ++L+ P Sbjct: 191 WEAISSVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A V+ Y P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++K++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ ES VC C G G IR S+ALSILR +EE Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLALSILRILEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ I V YLLN+KR +I E R GV + ++ L + + + P Sbjct: 431 IKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTPHYQVLRRRPD 490 Query: 572 QALVNTGHKVG--SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + V +A + + ++E L + + + Sbjct: 491 DVISEASYDVELMPAVEAETETTTSAPIKREEPALKGLVAPTAAPVVAPKEETAKKADDV 550 Query: 630 KRRRRR-----------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 R + + ++ +D + N Sbjct: 551 PSLFARFGKWISDLFGSESEEETNKDKKPQSGNKNRNNRSRNNDDRRRKPRNKNNRRGNQ 610 Query: 679 LENGAHGFTENYDVSIPPVSTPEME--SSNSSSDPIVKKTRWWKRRK 723 +N G +N D P E + + K RK Sbjct: 611 SQNRDQGKDQNRDGEQQDNRKPRGEQQRDQRQDQDDKRNNKGRKPRK 657 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 62 AERHGFLPLKEIARTYF 78 >gi|261339386|ref|ZP_05967244.1| ribonuclease E [Enterobacter cancerogenus ATCC 35316] gi|288318187|gb|EFC57125.1| ribonuclease E [Enterobacter cancerogenus ATCC 35316] Length = 1069 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 194/629 (30%), Positives = 311/629 (49%), Gaps = 11/629 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KRA + EAR GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQTPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + E + P + + + E+ Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPEAAMEKPAAKP 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ + + G++S + + + E + Sbjct: 551 AAQKTAPEVAKAQPEQ--PGLLSRIIGALKKMFAGEEAQPEQPKEAPKQAKPERQQDRRK 608 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + N ++ + R Sbjct: 609 RQNNRRDRNDRSDRNERNDRNERNDRNER 637 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|172060046|ref|YP_001807698.1| ribonuclease [Burkholderia ambifaria MC40-6] gi|171992563|gb|ACB63482.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MC40-6] Length = 1059 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 189/468 (40%), Positives = 280/468 (59%), Gaps = 3/468 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 83 DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 ++ L+E L++P GM +I RTAG R+ E++ D YL++LW + + + Sbjct: 143 EGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIEAASQSGN 201 Query: 284 --APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP V++Y D Sbjct: 202 AGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKVKRYHD 261 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA + Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK DRARVQ+G IS Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 +V +LLN+KR I + E+RF V I ++ L + +E+ A ++ Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 ++ + + E + PK E+ S R Sbjct: 502 WKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPERPAPSAAPQR 549 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|261364851|ref|ZP_05977734.1| putative ribonuclease E [Neisseria mucosa ATCC 25996] gi|288566898|gb|EFC88458.1| putative ribonuclease E [Neisseria mucosa ATCC 25996] Length = 1010 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 204/633 (32%), Positives = 317/633 (50%), Gaps = 7/633 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 A+ A+ D D+ I + I E S+ + D ++ Sbjct: 10 QAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S + IQ+V+K ++VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ LK L++P GM +I RTAG R+ E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEERQE-LKAAMAELDIPNGMSIIARTAGIGRSAEELEWDLNYLKQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E P+L++ E +L+ RAIRD + DI EI+V ++ Y + +FM +MPS Sbjct: 189 WQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYEQVAEFMSYVMPS 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ Y+D P+F R IE Q++S V+LPS G ++I+ TEALVSIDVNS R+TR Sbjct: 249 NVGRLKLYQDHTPLFSRFQIEHQIESAFARSVSLPSGGAIVIDHTEALVSIDVNSARATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTA +TN+EAAEE+ARQ+RLRDL GL+V+DFIDME K+ R VE L+++LKKDR Sbjct: 309 GSDIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVLRDALKKDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G +S FGLLE+SRQR++ ++ ES+ C C G G IR S AL +LR ++E Sbjct: 369 ARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV +LLN+KRA + E R V++ ++ I L + + I + Sbjct: 429 MKDNTGEVHAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRID 488 Query: 572 QALVN-TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI-- 628 + + +A P P + + Q E Sbjct: 489 DVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTQPAPTVAEQKNGSWW 548 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + +R + V++V+ + ++ + N + Sbjct: 549 DSFKAWLKRIFGGNTAAETAPVAEVAEKRTSGSNNRNGNSGNRRANNRRQNPRRNNRHDG 608 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + N +++ + + +R Sbjct: 609 SKVEVREVADFKDKAADNQAAENETRNAKDNRR 641 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD E+ K+Q KGNIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLPF E+ Y++ Sbjct: 62 TDRHGFLPFKEVSRSYFR 79 >gi|16764541|ref|NP_460156.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994050|ref|ZP_02575142.1| ribonuclease E [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197263217|ref|ZP_03163291.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16419702|gb|AAL20115.1| RNase E [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241472|gb|EDY24092.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328040|gb|EDZ14804.1| ribonuclease E [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246396|emb|CBG24205.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992960|gb|ACY87845.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157726|emb|CBW17218.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912172|dbj|BAJ36146.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223803|gb|EFX48866.1| Ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129455|gb|ADX16885.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988076|gb|AEF07059.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1067 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684 ++ A G+ S + + + P ++ Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|197250329|ref|YP_002146858.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214032|gb|ACH51429.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 1067 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684 ++ A G+ S + + + P ++ Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|168244784|ref|ZP_02669716.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449847|ref|YP_002045184.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408151|gb|ACF68370.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336415|gb|EDZ23179.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1067 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|194445751|ref|YP_002040439.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404414|gb|ACF64636.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1068 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|326623700|gb|EGE30045.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1065 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 547 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 548 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 604 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 605 PRQNNRRDRNERRDTRDNRA 624 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|168467139|ref|ZP_02700981.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630355|gb|EDX48981.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 1068 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|134295141|ref|YP_001118876.1| ribonuclease E [Burkholderia vietnamiensis G4] gi|134138298|gb|ABO54041.1| RNAse E [Burkholderia vietnamiensis G4] Length = 1074 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 197/522 (37%), Positives = 295/522 (56%), Gaps = 7/522 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELAL--NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + NS P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 RAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V I ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 A ++ ++ + + E + PK E+ Sbjct: 491 DDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAA 532 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|322616555|gb|EFY13464.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620504|gb|EFY17368.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622498|gb|EFY19343.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629649|gb|EFY26424.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632631|gb|EFY29377.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636874|gb|EFY33577.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641588|gb|EFY38226.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646485|gb|EFY42995.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650022|gb|EFY46440.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653947|gb|EFY50270.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658479|gb|EFY54741.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663337|gb|EFY59539.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670071|gb|EFY66211.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674865|gb|EFY70956.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676665|gb|EFY72732.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682587|gb|EFY78606.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686660|gb|EFY82639.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195774|gb|EFZ80950.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198334|gb|EFZ83438.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204844|gb|EFZ89838.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209185|gb|EFZ94122.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213431|gb|EFZ98227.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217855|gb|EGA02570.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222143|gb|EGA06527.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229657|gb|EGA13780.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232882|gb|EGA16978.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240617|gb|EGA24659.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242931|gb|EGA26952.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323252623|gb|EGA36461.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258849|gb|EGA42502.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261038|gb|EGA44631.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266947|gb|EGA50432.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269988|gb|EGA53437.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1068 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684 ++ A G+ S + + + P ++ Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|168234112|ref|ZP_02659170.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471877|ref|ZP_03077861.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458241|gb|EDX47080.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331900|gb|EDZ18664.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1067 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684 ++ A G+ S + + + P ++ Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|54298187|ref|YP_124556.1| ribonuclease E [Legionella pneumophila str. Paris] gi|53751972|emb|CAH13396.1| Ribonuclease E [Legionella pneumophila str. Paris] Length = 663 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 205/646 (31%), Positives = 315/646 (48%), Gaps = 25/646 (3%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R AL+K + + D E + G++ E ++ + + Sbjct: 15 RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + ++ P I +I+ Q LL+Q+ KEERGNKGAA+TT+++LAG Sbjct: 75 PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMPN ISR+I + L+E L +P MG+I+RTAG ++ E++ D Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L W +++E + +AP L+++EG++I R+IRD K ISEII+ + Y +AK ++ Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + + P + ++ Y P+F IE Q+++ +Q +V LPS G ++I++TEALVSID+N Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 S ++T IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM KN R VE +LKE Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+ ++C C+G G +RS S LSI R Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +EE L+ I V ++ +++N+KR I + E R GVS+ V+ + + I Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + Q + + E V DE + + + Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEIHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546 Query: 624 --------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 T K+ R + + +G + Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHPSSKSSGGDKRQQGSNANRRRRSGGGQQ 606 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 S N N AH + + + + S + + KK Sbjct: 607 RSSSGNTNAA-TSAHQQRKKSNPNQQSHGGQQSNRSIPAKNEGNKK 651 >gi|109898451|ref|YP_661706.1| ribonuclease [Pseudoalteromonas atlantica T6c] gi|109700732|gb|ABG40652.1| RNAse E [Pseudoalteromonas atlantica T6c] Length = 1070 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 207/650 (31%), Positives = 321/650 (49%), Gaps = 34/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 27 EELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 86 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + KF+ + I++VIK Q +++QI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 87 EIARTYFPQGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMP 146 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LK+ L +P GMG+I+RTAG ++ E++ D L+ Sbjct: 147 NNPRAGGISRRIEGDERTD-LKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTH 205 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E A + AP L+++E N+I RAIRD +DI EI++ Y +A ++L+ P Sbjct: 206 WTAISEAADSRPAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPD 265 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A V+ Y P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 266 FANRVKLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 325 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++K++++ DR Sbjct: 326 GSDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDR 385 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ +S VC C G G +R S+ALS+LR +EE Sbjct: 386 ARVQLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTESLALSVLRIMEEES 445 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ I +V YLLN+KR + E R V + ++ + + + + P Sbjct: 446 IKDNTGQIEAQLPVNVATYLLNEKRGAVAGVEKRHKVQLVIIPNPNMETPHYNVARRRPD 505 Query: 572 QALVNTGHKVG--SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI- 628 A+ + + V + + +++ +L S + +++ Sbjct: 506 DAIHDMSYNVELMKNEDTEADKAVTATPVKEQPMLQSFVSPAKAAAVQPETPKKADVESV 565 Query: 629 ------------------------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + +R+ ++R ++ D S + S Sbjct: 566 SLLSKIASWLKSLFAPAPQPEPEPEVKPQRKPQQRRNRNNPRRSKQGDNRSDNRDDNRSS 625 Query: 665 DMYMEPSDITNHNLL-ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 SD + N N +N S E+ ++ D Sbjct: 626 SKDDNRSDNRDGNEKPNNRKPRRNDNRKPRNDNKSPKELTNTEQKKDQKP 675 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 52/77 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 17 KRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 76 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 77 AERHGFLPLKEIARTYF 93 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 7/128 (5%), Positives = 35/128 (27%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + + + + + S +D + + + ++ RR R Sbjct: 593 PQRKPQQRRNRNNPRRSKQGDNRSDNRDDNRSSSKDDNRSDNRDGNEKPNNRKPRRNDNR 652 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 +P D+ +++ ++ + ++ + + + + Sbjct: 653 KPRNDNKSPKELTNTEQKKDQKPAAPQKEVKEHKVAERRKRRDNRRSVRVDDSKEQTAKA 712 Query: 699 TPEMESSN 706 +++ Sbjct: 713 KTHTSNAD 720 >gi|322833657|ref|YP_004213684.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602] gi|321168858|gb|ADW74557.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602] Length = 1094 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 199/634 (31%), Positives = 314/634 (49%), Gaps = 15/634 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSAEALQWDLTFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ EST +C C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESTHHICPRCAGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR ++ E R GV +V ++ +++ + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + +A + E + P + +L+ E++ Sbjct: 491 KGEEISALSYLLPQIHEAEMLQPSEELPTERRRPEQPALAAFALQSEAPPSSFEQAAVTE 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R AT + A V++ S + + P +E E Sbjct: 551 EP-----VKTRTATVNAPATPVAEKSGFVSRLLSGLKSLFAPEPQQEVKPVE-APQETPE 604 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + R Sbjct: 605 ATETENRRNNERRNQRRQGGRRDRNGERGERNDR 638 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|157962325|ref|YP_001502359.1| ribonuclease [Shewanella pealeana ATCC 700345] gi|157847325|gb|ABV87824.1| ribonuclease, Rne/Rng family [Shewanella pealeana ATCC 700345] Length = 1084 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 207/650 (31%), Positives = 326/650 (50%), Gaps = 24/650 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+K Q +++QI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK LEVP GMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W ++E A + AP L+++E N+I RAIRD +D+ EI++ + Y +AK+ + L+ Sbjct: 189 HHWAAIKEAAEGAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + +++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERIKRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VEK++++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEKRHNVEVYVIPDPNMTTPDYRVVRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGV- 627 + + +K+ ++ Y+ E + L + + + + Sbjct: 489 KDDEISESSYKLLEKEESKLYEPRKLERAAAPQPALKGFSTPKKAPVVETKPAAPKKEEP 548 Query: 628 ---------------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ++ + +++ + G ++ + D + SD Sbjct: 549 GFFAKIAAAISSLFGSKEEPKAETKKQDKDSRGNQGRTNNRRNSNRRNDPRRNRNENRSD 608 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTRWWKR 721 N + ++ + + + + S P K R + Sbjct: 609 NRNDSRNDSEQAKDKRSKNSRSDKSDDRSQAQEDTSKRQPRADKPRSRQE 658 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|207857307|ref|YP_002243958.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709110|emb|CAR33443.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1068 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|204930832|ref|ZP_03221705.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320291|gb|EDZ05495.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1067 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYSAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDY Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYS 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|317492377|ref|ZP_07950806.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919716|gb|EFV41046.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1133 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 204/681 (29%), Positives = 324/681 (47%), Gaps = 55/681 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD DI EI++ K AK + L P Sbjct: 191 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + V YLLN+KR ++ E R GV + VV ++ + + + Sbjct: 431 ALKENTNEVHAIVPVPVASYLLNEKRESVSAIEKRQDGVKVIVVPNDQMQTPHYSVVRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECV-WQDEALLP----------------------- 605 + + + +A S E V + P Sbjct: 491 KGEETSTLSYLLPQLHEAESLTAEEEPVLERKRPEQPALAPFSLDVEAPPAETAAPATVT 550 Query: 606 ------IPKSESLED---------------IQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 +E + ++ + RR+ + ++ Sbjct: 551 PATKAVAKPAEPAQPGLVSRFFSALKNMFAGSESEQKPAAEPAAPVEEPRRQNQDRRNNN 610 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 D + + +D E S+ N++ + + D + + Sbjct: 611 RRQNGRRDRNDRNDRNNDRNSDRPERSNDRNNDRSNDRNERNSNREDQRRNRRQPAQAVN 670 Query: 705 SNSSSD--PIVKKTRWWKRRK 723 ++ + D P ++ RR+ Sbjct: 671 TDVNVDAAPTEQRDEQQPRRE 691 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 Score = 43.8 bits (101), Expect = 0.093, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 4/158 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E +PV+ ++++ + ++ + E D ++ ++ + Sbjct: 591 EPAAPVEEPRRQNQDRRNNNRRQNGRRDRNDRNDRNNDRNSDRPERSNDRNNDRSNDRNE 650 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +RR RR+PA + V D + + + +D + Sbjct: 651 RNSNREDQRRNRRQPA-QAVNTDVNVDAAPTEQRDEQQPRREPRNNDRQRRRTEDKRQAQ 709 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + V+ E E SN + + + +RR+ Sbjct: 710 QEVKALENNDVVAATEAEESNREENQHMPR---RQRRQ 744 >gi|268315782|ref|YP_003289501.1| ribonuclease, Rne/Rng family [Rhodothermus marinus DSM 4252] gi|262333316|gb|ACY47113.1| ribonuclease, Rne/Rng family [Rhodothermus marinus DSM 4252] Length = 604 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 160/593 (26%), Positives = 275/593 (46%), Gaps = 20/593 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +++I+A ++TR+ ++ D + E E ++ GNIYLA+V RV PS+QAAFVD Sbjct: 1 MAKEIIINA-EKDQTRIAIVEDGTLAEFYIEDPEHERTIGNIYLARVCRVMPSIQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP------DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 G + FL F +I P + P + L E H Sbjct: 60 IGQQQDAFLHFSDIAPSLPLQLKFLADPQPSVRKLAAEIEQHHQSLARRRHPRPHRADKS 119 Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 E A+ + + + ++ + + Sbjct: 120 EASDEDETTEAAASSRRRRLDARLRGRRRSAQRRLQRKTAAETTTTEAEAAPHADVSPET 179 Query: 175 --KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 K Q LLV+I+KE +KG+ V+T +SLAGR+ VL+P + + + R+ Sbjct: 180 LLKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVAVSKKITSYKERRRL- 238 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL-ALNSVAPHLVYEE 291 +P G GVI+RT +T + D L+ W+ + + A + P L++E+ Sbjct: 239 -RALARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKPPVLLHED 297 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 N++ IRDL+ +D + I+V + +R + +++ + P +V+ Y IF +GI Sbjct: 298 VNMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVAPHKVEVVQLYRGKEHIFKATGI 357 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 Q+ ++ V LPS GY+ I TEA+ IDVNSGR+ R E+ +L+ NLEAA IA Sbjct: 358 AEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRAGRGLSQEENSLRVNLEAARVIA 417 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 +Q+R+RDL G+IV+DFID++++KN + V +LK+ +KDRA ++ +S+FGL++++RQR Sbjct: 418 QQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPMSDFGLVQITRQR 477 Query: 472 IRSSVLESTTKVCTYCKGAGYIRS-------QSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +R S+ + K+ I ++ ++ R ++ Y N+ + H Sbjct: 478 LRPSLTTTFDKMAER-LAREKILPPAPSQPTPEALLEAMERWLQAYRHAGGRRNVTLRVH 536 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 YL + + + V + + F E + + L Sbjct: 537 PFTAAYLTRRVPTYPTRWLLKHLVRVRLESDPNQPPLSFRFEDPATGEDLTER 589 >gi|205353079|ref|YP_002226880.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272860|emb|CAR37787.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628158|gb|EGE34501.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1068 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|222148338|ref|YP_002549295.1| ribonuclease E [Agrobacterium vitis S4] gi|221735326|gb|ACM36289.1| ribonuclease E [Agrobacterium vitis S4] Length = 1035 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 340/604 (56%), Positives = 413/604 (68%), Gaps = 3/604 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHS---LEEVAPIANFSQETEEESIISANNDVVSN 148 +A E D ++G + D E + + + +++ Sbjct: 214 AEPVAVESDETPDDGSSNGSMAAMVDTDSISEETDSRHRHDDDDDDDDDDGEKEEIESVG 273 Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 ED P+ V + ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSV Sbjct: 274 AEDAMEEVPDRVRRTPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSV 333 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 LMPNT++G ISRKITNP DRK LKE+AR LEVP GMGVILRTAGA+RTK+E+KRDFEYL Sbjct: 334 LMPNTARGGGISRKITNPADRKRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYL 393 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 MRLW+NVR L LNS AP LVYEEG+LIKR+IRDLY KDISEI+VSGE+GYREAKDFMK+L Sbjct: 394 MRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKML 453 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 MPS+A++V+ Y D HPIF RSGIE QLD + Q +VTL S GY+IINQTEALVSIDVNSGR Sbjct: 454 MPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGR 513 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 STRE+ IEDTALQTNLEAAEE+ARQLRLRDLAGLIV+DFIDMEEK+NNRSVEKKLK+ LK Sbjct: 514 STREYSIEDTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLK 573 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 DRAR+QVG IS+FGLLEMSRQRIR+SVLESTT+VC +C G G IRSQSSVAL +LR VE Sbjct: 574 NDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLRGVE 633 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 EYLL+ T H+I V T + LYLLN KR +IV+YE RFGVSI + + + F I+KG Sbjct: 634 EYLLKSTTHDITVRTLPETALYLLNHKRGSIVDYENRFGVSIIIDSDASVGHQHFAIDKG 693 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 PV V + S+ D IE +D+ + ++ N + + Sbjct: 694 EPVANPVRIETLLPLISEPEEDDPIIEIEEEDDEDVVEAPVQAQPASSGNAAANAAEDGN 753 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RKR+RRRRRR + H G + + D + E + + +E Sbjct: 754 RKRKRRRRRRGKNGNGHADGQQNAAGGDEGDDDSEGEDDAEDTAEDRDDSVEASDASEDG 813 Query: 689 NYDV 692 N + Sbjct: 814 NSES 817 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 88/159 (55%), Positives = 108/159 (67%), Gaps = 1/159 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES-NIAQTDSEAVADDVTHGDVTIPNDHS 119 YGGNRHGFL F EIHPDYYQIP +DRQALLK + + V D + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEHGRHDDGDFEPVRSRDPGERDQPV 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 + + A AN ++E ++ A++D + +P+ Sbjct: 121 IADPAEFANEAEEVAGLAVNQADDDHAQTTAEQPADAPQ 159 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 7/147 (4%) Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + P K +A ++S+E + + E+ V Sbjct: 891 PATEAVKADEPVAAKPRRARK-PKASAKTEAADSVETVTEPAAVPEAVVVEAPAAAEPVA 949 Query: 638 RRPATDHHD-AGVVSDVSSIQNVID-DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 P ++ DVS+ + ++ + ++ EP +++ + + + N S P Sbjct: 950 ASPVSEETSVPAPAQDVSAPEPAVEAPAPEVASEPEAVSDASAEKPVRANRSSNVSTSEP 1009 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRR 722 V++ +N P KK WW++R Sbjct: 1010 VVTSV----TNGEEAPKPKKGGWWQKR 1032 >gi|330815963|ref|YP_004359668.1| Ribonuclease E [Burkholderia gladioli BSR3] gi|327368356|gb|AEA59712.1| Ribonuclease E [Burkholderia gladioli BSR3] Length = 1114 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 189/451 (41%), Positives = 280/451 (62%), Gaps = 3/451 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN +G +SR+I Sbjct: 83 DMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI 142 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR--ELALN 281 ++ L+E LE+P GM +I RTAG R+ E++ D YL++LW + + + Sbjct: 143 EGDERQE-LRETMAQLEIPEGMSMIARTAGIGRSAEELQWDLNYLLQLWHAIEAASKSGH 201 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP V++Y D Sbjct: 202 NGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKVKRYHD 261 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T+ IE+TA + Sbjct: 262 DVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARATKGADIEETATR 321 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK DRARVQ+G IS Sbjct: 322 TNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISR 381 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E ++ I Sbjct: 382 FGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHC 441 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 +V +LLN+KR I + E+RF V I ++ L + +E+ A ++ Sbjct: 442 QVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRAS 501 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 ++ + + E + A PK E+ Sbjct: 502 WKMAEEAARELESETGYSKRAADAKPKQEAA 532 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|54295136|ref|YP_127551.1| ribonuclease E [Legionella pneumophila str. Lens] gi|53754968|emb|CAH16456.1| Ribonuclease E [Legionella pneumophila str. Lens] Length = 663 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 204/646 (31%), Positives = 315/646 (48%), Gaps = 25/646 (3%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R AL+K + + D E + G++ E ++ + + Sbjct: 15 RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + ++ P I +I+ Q LL+Q+ KEERGNKGAA+TT+++LAG Sbjct: 75 PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMPN ISR+I + L+E L +P MG+I+RTAG ++ E++ D Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L W +++E + +AP L+++EG++I R+IRD K ISEII+ + Y +AK ++ Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + + P + ++ Y P+F IE Q+++ +Q +V LPS G ++I++TEALVSID+N Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 S ++T IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM KN R VE +LKE Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+ ++C C+G G +RS S LSI R Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +EE L+ I V ++ +++N+KR I + E R GVS+ V+ + + I Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + Q + + E V DE + + + Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546 Query: 624 --------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 T K+ R + + +G + Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHPSSKSSGGDKRQQGSNANRRRRSGGGQQ 606 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 S N N H + + + + + S + + KK Sbjct: 607 RSSSGNTNAA-ASTHQQRKKSNPNQQSHGSQQSNRSIPAKNEGNKK 651 >gi|307611135|emb|CBX00779.1| ribonuclease E [Legionella pneumophila 130b] Length = 663 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 204/646 (31%), Positives = 315/646 (48%), Gaps = 25/646 (3%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R AL+K + + D E + G++ E ++ + + Sbjct: 15 RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + ++ P I +I+ Q LL+Q+ KEERGNKGAA+TT+++LAG Sbjct: 75 PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMPN ISR+I + L+E L +P MG+I+RTAG ++ E++ D Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L W +++E + +AP L+++EG++I R+IRD K ISEII+ + Y +AK ++ Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + + P + ++ Y P+F IE Q+++ +Q +V LPS G ++I++TEALVSID+N Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 S ++T IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM KN R VE +LKE Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+ ++C C+G G +RS S LSI R Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +EE L+ I V ++ +++N+KR I + E R GVS+ V+ + + I Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + Q + + E V DE + + + Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546 Query: 624 --------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 T K+ R + + +G + Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHPSSKSSGGDKRQQGSNANRRRRSGGGQQ 606 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 S N N H + + + + + S + + KK Sbjct: 607 RSSSGNTNAA-ASTHQQRKKSNANQQSHGSQQSNRSIPAKNEGNKK 651 >gi|194290176|ref|YP_002006083.1| ribonuclease e [Cupriavidus taiwanensis LMG 19424] gi|193224011|emb|CAQ70020.1| Ribonuclease E [Cupriavidus taiwanensis LMG 19424] Length = 1031 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 204/563 (36%), Positives = 298/563 (52%), Gaps = 7/563 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L VP GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLTVPEGMSIIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A ++ AP L+Y E +L+ RAIRD + DI EI++ ++ Y +A+ FM ++MP Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + ++A + + + + E I E+ V R Sbjct: 491 PRLEDSTASYKMAEAAAKELEADTSYSSR--RKEEAKPRQEAAVKGITPEQPAPVSVPRP 548 Query: 633 RRRRRRRPATDHHDAGVVSDVSS 655 R R A V + Sbjct: 549 ERAPRPEAAPVAPPVPATKPVEA 571 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGN 110 >gi|168264022|ref|ZP_02685995.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347312|gb|EDZ33943.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 1067 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|198245804|ref|YP_002215952.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940320|gb|ACH77653.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 1068 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|114331691|ref|YP_747913.1| ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91] gi|114308705|gb|ABI59948.1| RNAse E [Nitrosomonas eutropha C91] Length = 849 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 202/547 (36%), Positives = 296/547 (54%), Gaps = 12/547 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++ + D E + + ++ LE + E + + Sbjct: 11 PEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLE----------PSLEAAFVDY 60 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + + + I E+++ Q L+VQ+ K+ERGNKGAA+TTY+S Sbjct: 61 GAGRHGFLPYKEIAPTCFDKNTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYIS 120 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN +G ISR+++ + L+E+ L+VP GM +I RTAG R + E+ Sbjct: 121 LAGRYLVLMPNNPQGGGISRRVSAEERAE-LREVINHLQVPDGMSIIARTAGIGRNEEEL 179 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D YL++LW + A + L+Y+E +L+ RAIRD + +I EI++ + Y +A Sbjct: 180 QWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQA 239 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 FM +MP+ ++ Y+D P+F R IE Q+++ + +VTLPS G ++I+ TEALVS Sbjct: 240 YQFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVS 299 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNS R+ R IE+TAL TNLEAA+EIARQLRLRDL GL+VVDFIDME +N R VE Sbjct: 300 IDVNSARAIRGSDIENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVET 359 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L ++L+ DRARVQ+G IS FGLLE+SRQR+R S+ E C C G G+IR S AL Sbjct: 360 NLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSAL 419 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR ++E ++ + V DV +LLN+KR+ I EAR V I ++ I + Sbjct: 420 HILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETP 479 Query: 562 LFYIEKGSPVQALVNT-GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + I + G + + +A+ P ++ Q V Sbjct: 480 NYTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPV 539 Query: 621 SEESTGV 627 EE Sbjct: 540 PEEKPRE 546 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 39/74 (52%), Positives = 53/74 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ K+Q K NIY A VTR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHP 76 RHGFLP+ EI P Sbjct: 62 AGRHGFLPYKEIAP 75 >gi|297538697|ref|YP_003674466.1| Rne/Rng family ribonuclease [Methylotenera sp. 301] gi|297258044|gb|ADI29889.1| ribonuclease, Rne/Rng family [Methylotenera sp. 301] Length = 894 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 208/646 (32%), Positives = 307/646 (47%), Gaps = 25/646 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 ++ A+ D D+ I + + + I E S+ +A D + Sbjct: 10 QSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYGMDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K + + + IQ+ +K Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVARSYYKEGADGKSRIQDALKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I + L+++ LEVP GM +I RTAG R E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEDRDE-LRDVLAQLEVPKGMSIIARTAGIGRNAEELQWDLNYLTQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + + +L+Y+EG+L+ RAIRD + DI EI++ + +A FM +MP Sbjct: 189 WTAIDGASAMQAGAYLIYQEGSLVIRAIRDYFSSDIGEILIDTPDIHEQAVQFMNHVMPG 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V+ Y+D P+F R IE Q++S EV LPS G ++I+ TEALVS+DVNSGR+TR Sbjct: 249 NVNRVKLYQDEIPLFTRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE TA TN+EAAEE+ARQLRLRDL GL+V+DFIDME ++N R VE L+++L DR Sbjct: 309 GSDIEHTAFNTNIEAAEEVARQLRLRDLGGLVVIDFIDMESQRNQREVENALRDALHVDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ G IS FGLLE+SRQR+R S+ E+ C C G G+IR S AL ILR +E Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGETNHIPCPRCSGTGHIRGIESTALHILRITQEDA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + I V +V +LLN+KRA I + E R GV + ++ I L + I + Sbjct: 429 MKENSAIIQVQLPVEVATFLLNEKRADIHKIEQRMGVEVVLIPNIHLETPNYNIVRIKHD 488 Query: 572 QALVNTGHKVGSDSQAPSY----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 T + P+ E + + E Sbjct: 489 DVNEETNRASYKLVEMPAETTFIPTAEETAKAVRPVAAVKGITPAAPAPIVAEKEAEVVA 548 Query: 628 IRKRR----------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 K + + + + N + + P Sbjct: 549 APKLSFFAKIKNFFVSTPTAVEAPKTEAEKAEDTRRENNRNNRNRNNRNRNERNRGDRPE 608 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N + + P P+ + + + + Sbjct: 609 KDVNRA-NRPNENARPADAKPQEPRQQKPQQAKNEQARPDQNRNDK 653 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD E K+Q K NIY +TR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ YY+ +D ++ ++++ + D G+ Sbjct: 62 MDRHGFLPFKEVARSYYK-EGADGKSRIQDALKEGQELIVQVDKDERGN 109 >gi|200390327|ref|ZP_03216938.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602772|gb|EDZ01318.1| ribonuclease, Rne/Rng family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1068 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254362479|ref|ZP_04978587.1| ribonuclease E [Mannheimia haemolytica PHL213] gi|153094071|gb|EDN74983.1| ribonuclease E [Mannheimia haemolytica PHL213] Length = 977 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 203/655 (30%), Positives = 320/655 (48%), Gaps = 35/655 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++I+ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPSDYVFNGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ +C C+G G +R S+ALSILR +EE Sbjct: 368 ARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V I VV + F + + Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLREN 487 Query: 572 QALVNTGHKVGS-------------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + + Q E V E++L + Sbjct: 488 EITPTLSYDLTKHYEARHEEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPT 547 Query: 619 IVSEES-------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + S + + + + + R + + +N + Sbjct: 548 EPPKPSLLSRLIATIKGWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQ 607 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTR 717 P++ + E S E+++ + KK R Sbjct: 608 AQTTPAEEKPMRSEKKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVR 662 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|161614590|ref|YP_001588555.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363954|gb|ABX67722.1| hypothetical protein SPAB_02340 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1067 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 192/620 (30%), Positives = 305/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ G+ S + + + + + Sbjct: 551 ---ATAKKDNVAVAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|148262384|ref|YP_001229090.1| ribonuclease [Geobacter uraniireducens Rf4] gi|146395884|gb|ABQ24517.1| RNAse G [Geobacter uraniireducens Rf4] Length = 503 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 169/565 (29%), Positives = 275/565 (48%), Gaps = 65/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N+++I+ + ETR+ ++ + + EL E K I GNIY +V RV P +QA Sbjct: 1 MGNELVINTT-SHETRIALIENGTIAELYIERSRVKGIVGNIYKGRVIRVLPGMQA---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I + D Sbjct: 56 ---------AFVDIG-------------------------------LEKAAFLYVADVFD 75 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + +++ V+ + ++ ++ Q L Sbjct: 76 AMDEYESFMDGNGKKDEPAEGEEPVIHPLHPIEEL------------------LQEGQEL 117 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQI KE G KGA +T ++SL GR+ V MP ISR+I + +R+ LKEI ++ Sbjct: 118 LVQISKEPIGTKGARITAHISLPGRHLVYMPTVDHVG-ISRRIEDEAERERLKEIVDRIK 176 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G G I+RT +++ ++ D YL +LWD V + + AP L++ + ++ ++ +R Sbjct: 177 PP-GGGFIVRTVSEGKSEEDLVSDLHYLTKLWDEVVKRKDKASAPSLIHSDLDVTQKVVR 235 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + + I+V + Y F+ MP + Y++ PIF G+EV++ Sbjct: 236 DILTESVERIVVDFKPEYDRIVQFISTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 295 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR+L Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 355 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+E++K D+++ + IS GL+EM+R+R+R S+ Sbjct: 356 GIIIIDFIDMEKEVNREKVFTALEEAVKSDKSKTNILKISELGLVEMTRKRVRESIGRMM 415 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+++V I R + +L I++ H V L +++R + Sbjct: 416 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKIMLTVHPQVADLLYDEERRGLE 475 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E F I V + F I Sbjct: 476 ELEKNFKKRITVRAKPGFHQEQFEI 500 >gi|217976915|ref|YP_002361062.1| ribonuclease, Rne/Rng family [Methylocella silvestris BL2] gi|217502291|gb|ACK49700.1| ribonuclease, Rne/Rng family [Methylocella silvestris BL2] Length = 1080 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 288/595 (48%), Positives = 383/595 (64%), Gaps = 8/595 (1%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 +D E A ++ D E + + + + Sbjct: 257 ADSHESGAYEEQPAPLFETGAAAPYAEAASVSLDEPDEAPSGQGSVVEARRSSESDEESE 316 Query: 144 DVVSNVEDVKGGSPED---VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 + +VE + G + E+ P++++RQY IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYL Sbjct: 317 EEDEHVEQLGGDAMEEVPVRPQRYRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYL 376 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGRYSVLMPNT++G ISRKIT+ DR+ LK IA+ LEVP GMGVILRTAGASRTK E Sbjct: 377 SLAGRYSVLMPNTARGGGISRKITDSTDRQRLKSIAQELEVPEGMGVILRTAGASRTKPE 436 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 +KRDFEYL+R+W+ VRE L S AP LVYEEG+LIKRAIRDL+ KDI +I+V+G+KGYRE Sbjct: 437 VKRDFEYLLRMWETVRETTLKSSAPTLVYEEGSLIKRAIRDLFNKDIDDIVVAGDKGYRE 496 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 A+DFM+LLMPS+ V+ Y D PIF +S +E QLD++ +VTL S GY++INQTEALV Sbjct: 497 ARDFMRLLMPSHVNSVQPYRDAQPIFSKSDVETQLDAMFLNQVTLKSGGYIVINQTEALV 556 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVNSGRSTREH IEDTAL+TNLEAA+E+ARQLRLRDLAGLIVVDFIDMEE +NNR+VE Sbjct: 557 AIDVNSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVE 616 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++LK++LK DRAR+QVG IS+FGLLEMSRQRIR+ VLE +T++C +C G+G +RS +S+A Sbjct: 617 RRLKDALKNDRARIQVGRISHFGLLEMSRQRIRTGVLEGSTELCPHCSGSGILRSTASIA 676 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 L +LR E+ LL+ +H++I+ T S V LY+LN+KRA + + E RFGV++++ + L Sbjct: 677 LHVLRVAEDALLKSASHDLIIRTRSAVALYILNEKRAHLRDLERRFGVAVSIEVDDSLIG 736 Query: 561 KLF-YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 ++ +E+G P + +D A P+ E+ E ++ Sbjct: 737 SVYHAMERGEPASGGHEPIELAAPEP----AQIAARDFVEDAAPGFAPEDEAPEGAAEDG 792 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 ++ G R +PSD Sbjct: 793 DEDQEPGDANARGEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANAPQPSDDA 847 Score = 204 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 99/192 (51%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASH EETRVVVLR NRVEE DFES KKQ++GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP DRQAL++E AQ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQQREADDEESSPRRSRRHRRGDRN 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + E + + + + + + Sbjct: 121 GGDRSGNGDRNGKRAEKRSGDAETLSEPYEASSEETQQFDAAQDDAGSPNRNEARGEEHA 180 Query: 181 LVQIVKEERGNK 192 + E + + Sbjct: 181 GERFEAEAQDRR 192 >gi|148359834|ref|YP_001251041.1| ribonuclease E [Legionella pneumophila str. Corby] gi|296107882|ref|YP_003619583.1| Ribonucleases G and E [Legionella pneumophila 2300/99 Alcoy] gi|148281607|gb|ABQ55695.1| ribonuclease E [Legionella pneumophila str. Corby] gi|295649784|gb|ADG25631.1| Ribonucleases G and E [Legionella pneumophila 2300/99 Alcoy] Length = 663 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 205/647 (31%), Positives = 317/647 (48%), Gaps = 27/647 (4%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R AL+K + + D E + G++ E ++ + + Sbjct: 15 RVALIKNNQLFDLDIECPGEIKKKGNIYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIA 74 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + ++ P I +I+ Q LL+Q+ KEERGNKGAA+TT+++LAG Sbjct: 75 PEYLSKNPEEFGDEKPP-------ITSLIREGQELLIQVDKEERGNKGAALTTFITLAGC 127 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMPN ISR+I + L+E L +P MG+I+RTAG ++ E++ D Sbjct: 128 YLVLMPNNPHSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSLEELQDDL 186 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L W +++E + +AP L+++EG++I R+IRD K ISEII+ + Y +AK ++ Sbjct: 187 NMLCNQWQSIKEAYNSELAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYIKAKQYI 246 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + + P + ++ Y P+F IE Q+++ +Q +V LPS G ++I++TEALVSID+N Sbjct: 247 ERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAYQRQVMLPSGGALVIDRTEALVSIDIN 306 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 S ++T IE TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM KN R VE +LKE Sbjct: 307 SAKATGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKE 366 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+ ++C C+G G +RS S LSI R Sbjct: 367 ALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITR 426 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +EE L+ I V ++ +++N+KR I + E R GVS+ V+ + + I Sbjct: 427 LIEEEALKEKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTI 486 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + Q + + E V DE + + + Sbjct: 487 TRLKEDNVGKSKKPSYSLIQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKR 546 Query: 624 ---------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + +K R + + + A+ G S N S Sbjct: 547 LWTSLFGGHSVAHTVTQEPGKKHHRAQNQGKHASSKSSGGDKRQQGSNANRRRRSGGGQQ 606 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 S + H + + + + S + + KK Sbjct: 607 RSSSGNTNAAA--STHQQRKKSNPNQQSHGGQQSNRSIPAKNEGNKK 651 >gi|50120722|ref|YP_049889.1| ribonuclease E [Pectobacterium atrosepticum SCRI1043] gi|49611248|emb|CAG74694.1| ribonuclease E [Pectobacterium atrosepticum SCRI1043] Length = 1094 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 207/676 (30%), Positives = 312/676 (46%), Gaps = 64/676 (9%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALGSLQLPDGMGLIVRTAGVGKSAEALQWDLAFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A AP L+++E N+I RA RD +DI EI++ K AK+ + L P Sbjct: 191 WDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKILELAKEHISALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++S+++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDSVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQTPHYSVVRVR 490 Query: 570 PVQALVNTGH-----------------------------------KVGSDSQAPSYDKNI 594 + + ++ ++ P Sbjct: 491 KGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETTPPVAKAAP 550 Query: 595 ECVWQDEALLP---------------IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + E P + D D EE +R RR RR Sbjct: 551 DVAKAAEEAQPGLISRFFSALKGVFASEPAAKAVDSVDEKKVEEEKAGEGQRSERRNPRR 610 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + D G + D + + + EN +E P Sbjct: 611 QGNNRRDRGSR------EQRDDQRRNKRQTEEVVAETRVAENVEKADSEEQPRREPRAER 664 Query: 700 PEMESSNSSSDPIVKK 715 P+ +K Sbjct: 665 QRRRQDERRQAPVEEK 680 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|83748465|ref|ZP_00945487.1| Ribonuclease E [Ralstonia solanacearum UW551] gi|207743613|ref|YP_002260005.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum IPO1609] gi|83724876|gb|EAP72032.1| Ribonuclease E [Ralstonia solanacearum UW551] gi|206595012|emb|CAQ61939.1| ribonuclease e (rnase e) protein [Ralstonia solanacearum IPO1609] Length = 1018 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 197/529 (37%), Positives = 292/529 (55%), Gaps = 5/529 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R+ E++ D YLM+LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMAQLQVPEGMSIIARTAGIGRSAEELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V A+++ AP L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 191 KAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALV++DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 ++ ++ + + + + P+ E+ Sbjct: 491 PRLDDNKASYKMAEEAAKELEADTAYSTRKEAVKPRQEAAVKGITPEQP 539 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGN 110 >gi|16760062|ref|NP_455679.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142167|ref|NP_805509.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163778|ref|ZP_03349488.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|289829595|ref|ZP_06547150.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25289275|pir||AC0641 ribonuclease E (EC 3.1.4.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502356|emb|CAD08310.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi] gi|29137796|gb|AAO69358.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1067 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 193/623 (30%), Positives = 306/623 (49%), Gaps = 12/623 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSSSDP 711 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRARRD 630 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|325275826|ref|ZP_08141691.1| ribonuclease E [Pseudomonas sp. TJI-51] gi|324099045|gb|EGB97026.1| ribonuclease E [Pseudomonas sp. TJI-51] Length = 510 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 212/500 (42%), Positives = 298/500 (59%), Gaps = 4/500 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKTPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL VP MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ EA F++ +MP YA Sbjct: 188 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E L+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 487 Query: 574 LVNTGHKVGSDSQAPSYDKN 593 V + + + + Sbjct: 488 EVLNNQSSYEIAASETEEAP 507 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 43/103 (41%), Positives = 62/103 (60%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKTPEGRVNIKEVLSEGQEVIVQVEKEE 103 >gi|120609861|ref|YP_969539.1| ribonuclease E [Acidovorax citrulli AAC00-1] gi|120588325|gb|ABM31765.1| RNAse E [Acidovorax citrulli AAC00-1] Length = 1040 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 188/542 (34%), Positives = 281/542 (51%), Gaps = 4/542 (0%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + Q I +VI+ Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP + Sbjct: 191 TAIDGAARGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMSHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D +F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AAKVKRYRDDAALFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++DRA Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ G IS FGL+EMSRQR++ S+ E C C G G++R +L ILR ++E + Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPRCDGTGHVRDTEGFSLQILRMIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +V +LLN+KR I + E + VS+ +V + + +E+ Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKTMETPKYKLERLKHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 ++ ++ + Q+ P + E Sbjct: 491 PRLDHIAASYKLAEEMEDPTTVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPEMPRTAG 550 Query: 630 KR 631 R Sbjct: 551 AR 552 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 62 EDRHGFLPFKEISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGN 110 >gi|167623697|ref|YP_001673991.1| ribonuclease [Shewanella halifaxensis HAW-EB4] gi|167353719|gb|ABZ76332.1| ribonuclease, Rne/Rng family [Shewanella halifaxensis HAW-EB4] Length = 1099 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 213/648 (32%), Positives = 327/648 (50%), Gaps = 26/648 (4%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 20 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLP 79 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EVIK Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 80 LKEIAREYFPKGYSFQGRPSIKEVIKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 139 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK LEVP GMG+I+RTAG + E+K D + L Sbjct: 140 MPNNPRAGGISRRIEGDERTE-LKAALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQ 198 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W ++E A ++ AP L+++E N+I RAIRD +D+ EI++ + Y +AK+ + L+ Sbjct: 199 HHWAAIKEAAESAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVR 258 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + +++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 259 PDFVERIKRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 318 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VEK++++++ Sbjct: 319 TKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHH 378 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 379 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 438 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 439 EAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEKRHNVEVYVIPDPNMTTPDYRVVRHR 498 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIEC--------------------VWQDEALLPIPKS 609 + + +K+ +A Y+ V A I + Sbjct: 499 KDDEISESSYKLLEKEEAKLYEPRKLERAATPQPALKGFSTPKQAPVVETKPAAPKIEEP 558 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 I I S + K +++ + + ++ + + + Sbjct: 559 GLFAKIAAAISSLFGSKEEPKTEPKKQDKDSRNQGRNNNRRNNNRRNDPRRNRNDNRSDS 618 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +D N + + D S + T + ++ + K T+ Sbjct: 619 RNDSRNDSEQSKDKRAKSSRSDSSDTRLPTEDTNKRQPRNEKVRKDTK 666 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 12 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 71 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y +Q S ++ + + + + + Sbjct: 72 AERHGFLPLKEIAREYFPKGYSFQGRPSIKEVIKEGQEVIVQIDKEERGNK 122 >gi|238910995|ref|ZP_04654832.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1068 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 193/597 (32%), Positives = 306/597 (51%), Gaps = 10/597 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST-GV 627 + + + +A + E + P + ++ D+ E V Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ +PA + ++ + + + + P ++ Sbjct: 551 ATAKKDNVAAAQPAQPGLFSRFLNALKELFSGEETKTVETAAPKAEEKAERQQDRRK 607 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|73541962|ref|YP_296482.1| RNAse E [Ralstonia eutropha JMP134] gi|72119375|gb|AAZ61638.1| RNAse E [Ralstonia eutropha JMP134] Length = 1042 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 203/542 (37%), Positives = 297/542 (54%), Gaps = 7/542 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ + Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L+VP GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRQE-LRETMSQLQVPDGMSIIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A ++ AP L+Y E +L+ RAIRD + DI EI++ ++ Y +A+ FM ++MP Sbjct: 191 KAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDN 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+T+ Sbjct: 251 MNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TAL+TNLEAA+EIARQLRLRDL GLIV+DFIDME K + VE +LK++L+ DRA Sbjct: 311 ADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETRLKDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + I +V +LLN+KR I E RF V++ ++ L + +E+ Sbjct: 431 KENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPHYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + G ++A + + + + A E I E+ V R Sbjct: 491 PRLEEGMASYRMAEAAAKELEADTSY--SARKKEDAKPRQEAAVKGITPEQPAPVSVPRP 548 Query: 633 RR 634 R Sbjct: 549 ER 550 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGN 110 >gi|325105837|ref|YP_004275491.1| ribonuclease, Rne/Rng family [Pedobacter saltans DSM 12145] gi|324974685|gb|ADY53669.1| ribonuclease, Rne/Rng family [Pedobacter saltans DSM 12145] Length = 516 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 145/575 (25%), Positives = 249/575 (43%), Gaps = 61/575 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I+++ T + +++D ++ EL+ E + G+IYL ++ ++ P L AAFVD Sbjct: 1 MVKELIINSAPGGVT-IALVQDKQLVELNKEQINNNYAVGDIYLGRIKKIMPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P Q+LLK + A+ Sbjct: 60 VGYEKDAFLHYLDLGPQ--------VQSLLKLTRQAR----------------------- 88 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + S + + I ++ +L Sbjct: 89 --------------------------NGNFTDYLLSSFKREEDIDKSGKISTILSKDLLL 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 VQI KE KG +++ LS+AGR+ VL+P + + +N + K Sbjct: 123 PVQIAKEPISTKGPRLSSDLSIAGRFVVLVPFSDVISISKKIKSNTERTRLRK--IVEGI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G G+I+RT + EI++D L+ W+ + + + + E +R Sbjct: 181 KPKGFGIIIRTVSEKKGVAEIQKDILDLVSKWETLMKKIPKTGPAKRILGEMGRTSTILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ D + + V + E K ++ + P IV+ Y+ PIF G+E Q+ + Sbjct: 241 DILNADFTHVYVDDPALFEEVKSYVHEISPEMESIVKLYKGKEPIFEHFGLEKQIKASFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L Y++I TEAL IDVNSG T E+ ALQ N EAA+EIARQLRLRD+ Sbjct: 301 KTVNLAGGAYLVIEHTEALHVIDVNSGNRTANPENQEENALQVNKEAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G++V+DFIDM + N + + LK + DRA+ + S FGL++++RQR+R + Sbjct: 361 GGIVVIDFIDMHKAPNRKELFDFLKTEMSHDRAKHTILPPSKFGLVQITRQRVRPEMNIV 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T++ C C G G I++ + I ++ L + I + H V ++ + Sbjct: 421 TSEKCPTCGGTGEIKASIVLIDDIENNLNYILNEQAEKGITLAVHPYVEAFIKRGFLSKQ 480 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 V++ ++G + V F + Sbjct: 481 VKWFFKYGQWVKVKGITSYHLTEFAFMNNKEEEIK 515 >gi|319779242|ref|YP_004130155.1| Ribonuclease E [Taylorella equigenitalis MCE9] gi|317109266|gb|ADU92012.1| Ribonuclease E [Taylorella equigenitalis MCE9] Length = 963 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 200/569 (35%), Positives = 302/569 (53%), Gaps = 14/569 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 + K I E ++ Q L++Q+ KEERGNKGAA+TTY+SLAGRY VLMPN Sbjct: 68 KEVSRNYHKSGTDHSRISEALEVGQELIIQVEKEERGNKGAALTTYISLAGRYLVLMPNN 127 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 KG ISR+ + +R+ L+E LE+P GM +I RTAG RT E+ D YLM+LW Sbjct: 128 PKGGGISRR-IDWEERQELREAMSHLELPEGMSLIARTAGIGRTTEELNWDLTYLMQLWK 186 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + + A + AP L+Y+E +L+ RA+RD + DI+EI++ ++ Y + FM+ +MP Sbjct: 187 AIEDAANHYSAPILIYQESSLVIRALRDYFSHDITEILIDTDEIYDQVNAFMQDVMPDNV 246 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 +++Y P+F R +E Q+++ + V LPS G ++I+ TEALV++DVNS RSTR Sbjct: 247 AKIKRYRHAVPLFSRFQVEHQIETAYSRHVHLPSGGSIVIDHTEALVAVDVNSARSTRGG 306 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TA++TN+EAAEE+ARQLRLRDL GLIV+DFIDME+ KN ++VE KLKE+++ DRAR Sbjct: 307 DIEETAMRTNIEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQKAVESKLKEAIQFDRAR 366 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGL+E+SRQR+R S+ E + +C C G G IR S AL++LR ++E L+ Sbjct: 367 VQMGKISKFGLMELSRQRLRPSLNEGSHIICPRCNGTGAIRDIESSALNVLRLLQEEALK 426 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + DV YLLN+KR IV+ EA+ + I ++ L + IE+ ++ Sbjct: 427 ENTAVVNAQVPVDVATYLLNEKRQDIVKMEAKNQIRIYLIPSKNLETPHYNIERIRHDES 486 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR- 632 ++ + + +D+ P + + T Sbjct: 487 RMDELPVSYKLTDDSIEEIPSWQEKKDQPKAPEAVVKGIRRQTPAPTPSPKTKETNSTEL 546 Query: 633 ------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 R+ + T + S + + N + Sbjct: 547 TFWQKILSFFGFARKDQTPEITQTPKVKTPASKSCRKPHSSKTHKSQNHKKSSNNDEIEL 606 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + ++ S + P S +S Sbjct: 607 KASPSASKTKSDSERLRNKPRKAKSEENS 635 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 37/76 (48%), Positives = 55/76 (72%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+H EE RV ++ ++ ++D E+ ++Q KGNIY +TR+EPSL+A FVDYG Sbjct: 1 MLFNATHQEELRVAIVDGQKLLDIDIETSGREQRKGNIYKGVITRIEPSLEACFVDYGQE 60 Query: 65 RHGFLPFLEIHPDYYQ 80 RHGFLPF E+ +Y++ Sbjct: 61 RHGFLPFKEVSRNYHK 76 >gi|56413828|ref|YP_150903.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362751|ref|YP_002142388.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128085|gb|AAV77591.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094228|emb|CAR59733.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1067 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 193/620 (31%), Positives = 306/620 (49%), Gaps = 12/620 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRA 627 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|315179569|gb|ADT86483.1| ribonuclease E [Vibrio furnissii NCTC 11218] Length = 1044 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 201/647 (31%), Positives = 319/647 (49%), Gaps = 26/647 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSVNHIERTQDVKITVVPNSDMETPHFEVVRVRDG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + E ++ + E + + T Sbjct: 488 EEQNILSYL-----IPRKLEAMKEAEGKEPTETEVKPKRIEEPVLKGFAAPAQTAPAPAP 542 Query: 632 RRRRRRRRPAT-DHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENG-- 682 + + +P G+ + + +P N + ++ Sbjct: 543 TPKPQVEQPQEVKEEKPGLFGRFLKALSGLFAAPAEAPKKEEQDQPKAKGNDDRNKSSQP 602 Query: 683 ------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + P E + N ++D +R + RK Sbjct: 603 RRERNDRRRNSRDKNKRKPNDDAKERTNENKAADKDAPNSRKQQERK 649 Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEER 106 >gi|170726385|ref|YP_001760411.1| ribonuclease [Shewanella woodyi ATCC 51908] gi|169811732|gb|ACA86316.1| ribonuclease, Rne/Rng family [Shewanella woodyi ATCC 51908] Length = 1142 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 205/645 (31%), Positives = 320/645 (49%), Gaps = 21/645 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I E S+ +A D + Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+K Q +++QI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVVIQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK LEVP GMG+I+RTAG + E+K D + L+ Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLV 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W ++E A + AP L+++E N+I RAIRD +D+ E+++ + + +AK + L+ Sbjct: 189 HHWAAIKEAADSRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVSLVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + ++QYE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVDRIKQYEAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVSRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + +K+ +A Y+ E + L + V+ + Sbjct: 489 KDDQISESSYKLLDKPEAKLYEPRKLERAAPPQPALKGFSAPKKSIEATPSVAAKPAVKD 548 Query: 629 RKRR--------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + ++ +G + + + + + + + Sbjct: 549 SNEPGLISKFLSAIGALFKSEEKKEEPKKPQQSGRNNQNKNARRNTRRNDRRPRDDKEQS 608 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 N + +N D + ++ + + K R Sbjct: 609 GEKRERNPRNSRNKNADSNKENRASKDRDEQAKRQPRNSKSNRNQ 653 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|126442124|ref|YP_001059823.1| ribonuclease E [Burkholderia pseudomallei 668] gi|126221617|gb|ABN85123.1| ribonuclease E [Burkholderia pseudomallei 668] Length = 1088 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|124385225|ref|YP_001028741.1| ribonuclease E [Burkholderia mallei NCTC 10229] gi|254357684|ref|ZP_04973957.1| ribonuclease E [Burkholderia mallei 2002721280] gi|262193301|ref|YP_001081353.2| ribonuclease E [Burkholderia mallei NCTC 10247] gi|124293245|gb|ABN02514.1| ribonuclease E [Burkholderia mallei NCTC 10229] gi|148026811|gb|EDK84832.1| ribonuclease E [Burkholderia mallei 2002721280] gi|261835048|gb|ABO04992.2| ribonuclease E [Burkholderia mallei NCTC 10247] Length = 1087 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|326316003|ref|YP_004233675.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372839|gb|ADX45108.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1039 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 188/542 (34%), Positives = 281/542 (51%), Gaps = 4/542 (0%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + Q I +VI+ Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP + Sbjct: 191 TAIDGAARGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMSHVMPEH 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D +F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ + Sbjct: 251 AAKVKRYRDDAALFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAIKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L+ DRA Sbjct: 311 GDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ G IS FGL+EMSRQR++ S+ E C C G G++R +L ILR ++E + Sbjct: 371 RVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPRCDGTGHVRDTEGFSLQILRMIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +V +LLN+KR I + E + VS+ +V + + +E+ Sbjct: 431 KDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKTMETPKYKLERLKHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 ++ ++ + Q+ P + E+ Sbjct: 491 PRLDHIAASYKLAEEMEDPTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPETPRTAG 550 Query: 630 KR 631 R Sbjct: 551 PR 552 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 62 EDRHGFLPFKEISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGN 110 >gi|304397212|ref|ZP_07379091.1| ribonuclease, Rne/Rng family [Pantoea sp. aB] gi|304355361|gb|EFM19729.1| ribonuclease, Rne/Rng family [Pantoea sp. aB] Length = 1150 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 191/540 (35%), Positives = 287/540 (53%), Gaps = 9/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALDLPEGMGLIVRTAGVGKSAESLQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A N AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+D+IDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + E + P + + D V E Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPAPVEVEPEAQR 550 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|260767404|ref|ZP_05876342.1| ribonuclease E [Vibrio furnissii CIP 102972] gi|260617639|gb|EEX42820.1| ribonuclease E [Vibrio furnissii CIP 102972] Length = 1047 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 202/647 (31%), Positives = 320/647 (49%), Gaps = 26/647 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSVNHIERTQDVKITVVPNSDMETPHFEVVRVRDG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + E ++ + E + + T Sbjct: 488 EEQNILSYL-----IPRKLEAMKEAEGKEPTETEVKPKRIEEPVLKGFAAPAQTAPAPAP 542 Query: 632 RRRRRRRRPAT-DHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENG-- 682 + + +P G+ + + +P N + ++ Sbjct: 543 TPKPQVEQPQEVKEEKPGLFGRFLKALSGLFAAPAEAPKKEEQDQPKAKGNDDRNKSSQP 602 Query: 683 ------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + P T E + N ++D +R + RK Sbjct: 603 RRERNDRRRNSRDKNKRKPNDDTKERTNENKAADKDAPNSRKQQERK 649 Score = 123 bits (309), Expect = 7e-26, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAREYFPEGYSYQGRPSIKEVLNEGQEVIVQVEKEER 106 >gi|220934526|ref|YP_002513425.1| ribonuclease E [Thioalkalivibrio sp. HL-EbGR7] gi|219995836|gb|ACL72438.1| ribonuclease E [Thioalkalivibrio sp. HL-EbGR7] Length = 938 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 211/581 (36%), Positives = 293/581 (50%), Gaps = 33/581 (5%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 Q I++++K L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN + +SR+I Sbjct: 88 QGSIKDLVKEGMELIVQVEKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGVSRRIEGE 147 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + ++E LEVP GMG+I RTAG R E++ D EYL LW + E A P Sbjct: 148 DRSE-IREALSQLEVPQGMGLIARTAGVGRGVEELQWDLEYLKTLWAAITEAAEKRKGPF 206 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y+E N+I RA+RD DI+EIIV Y++A++FM+ +MP+ R ++ YE+ P+F Sbjct: 207 LIYQESNVIIRALRDHLRNDIAEIIVDVPAVYQQAQEFMQQVMPNNLRKLKLYEEHVPLF 266 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 R IE Q+++ Q EV+LPS G ++I+ TEAL+SIDVNS R+T+ IE+TAL TNLEA Sbjct: 267 NRYQIESQIEAAFQREVSLPSGGAIVIDHTEALISIDVNSARATKGSDIEETALNTNLEA 326 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+EIARQLRLRDL GLIV+DFIDM KN R VE +L+++L+ DRARVQVG IS FGLLE Sbjct: 327 ADEIARQLRLRDLGGLIVIDFIDMGPAKNQREVENRLRDALEMDRARVQVGRISRFGLLE 386 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 MSRQR+R S+ ES+ VC C G G+IRS S+ALS+LR +EE ++ ++ D Sbjct: 387 MSRQRLRPSLGESSQIVCPRCSGHGHIRSVESLALSVLRLIEEEAMKDKTGRVLAQLPVD 446 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV----------- 575 V +LLN+KR + E R V + +V ++ F + + + Sbjct: 447 VATFLLNEKRDAVNGIERRHDVMVTLVPTPDMVTPHFNVRRIRMDEMPEELRGKSSYQML 506 Query: 576 -NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD----------------- 617 + S V P P S + Sbjct: 507 PEEELPEPITVRPVSAPVERAAVQTIRPATPAPVSPEPVEAPARAQVPVAQPGFFARIWS 566 Query: 618 ---NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + R RR S+ S D Sbjct: 567 SLFAGAPRSEAETEIEESKSRARRSSTGRGGRDARDSEAERGGRGRRRSSTRDRRREDAG 626 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + E P + P +K Sbjct: 627 EGRPRPSQDKPAQERPAPEKPAAEKAPAAEKPAIEKPAREK 667 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 37/72 (51%), Positives = 51/72 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+ EE RV ++ ++ +LD E ++Q K N+Y A VTRVEPSL+AAFV+YG Sbjct: 2 KRILINATQPEELRVAMVDGQKLYDLDIEVPSREQKKANVYKAVVTRVEPSLEAAFVNYG 61 Query: 63 GNRHGFLPFLEI 74 RHGFLP EI Sbjct: 62 AERHGFLPLKEI 73 >gi|88810810|ref|ZP_01126067.1| RNase E [Nitrococcus mobilis Nb-231] gi|88792440|gb|EAR23550.1| RNase E [Nitrococcus mobilis Nb-231] Length = 910 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 202/547 (36%), Positives = 313/547 (57%), Gaps = 10/547 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+ ++ D E A + ++ +E A A Sbjct: 8 PEELRVALVDGQSLYDLDIETPARERKKANIYKGKITRVEPSLEAAFV--------QYGA 59 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +++ G + + I+E I+ Q L+VQ+ KEERGNKGAA+TT++S Sbjct: 60 ERHGFLPFKEIARGYFQTEEDADLTKISIKEAIREGQELVVQVDKEERGNKGAALTTFIS 119 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN + +SR+I +++ R L+VP GMG+I+RTAG R+ E+ Sbjct: 120 LAGRYLVLMPNNPRAGGVSRRIEGQDR-NEIRDALRSLDVPEGMGLIVRTAGVGRSVEEL 178 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D +YL+ LW ++++ A AP L+Y+E N+I RA+RD DI+EI+V Y +A Sbjct: 179 QWDLDYLLNLWMSIQKAAAERNAPLLIYQESNVIIRALRDYLRNDIAEILVDDPDVYEQA 238 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F++ +MP ++ Y+D P+F R +E Q++S Q E+ LPS G ++I++TEAL+S Sbjct: 239 KGFIQQVMPHNLAKLKPYQDNVPLFTRYQLESQIESAFQREIRLPSGGAIVIDRTEALIS 298 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NS R+T+ IE+TALQTN EAA+E+ARQLRLRDL GLIVVDFIDM +N R VE Sbjct: 299 IDINSSRATKGADIEETALQTNNEAADEVARQLRLRDLGGLIVVDFIDMGANRNQREVEN 358 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +L+E++K DRARVQVG IS FGLLEMSRQR+ +S+ ES+ +VC+ C G G +R S+AL Sbjct: 359 RLREAVKMDRARVQVGRISRFGLLEMSRQRLHTSLGESSQEVCSRCGGRGTVRGVESLAL 418 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ++LR +EE ++ H ++ +V +LLN+KR+ + E R GV I ++ L Sbjct: 419 AVLRIIEEEAMKEKTHKVLAQLPIEVATFLLNEKRSVLSATEQRNGVEITLIPNKTLETP 478 Query: 562 LFYIEKGSPVQA-LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + I++ + +++ + + + + + + P + L+ + + Sbjct: 479 HYEIQRIRTDDRTAEGSSYQLVAKTPQGKLAEQLVAAATQKPRIEEPVVKHLKPLTPAPL 538 Query: 621 SEESTGV 627 + Sbjct: 539 PLQMKNS 545 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 2/109 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ + +LD E+ +++ K NIY K+TRVEPSL+AAFV YG Sbjct: 1 MLINATQPEELRVALVDGQSLYDLDIETPARERKKANIYKGKITRVEPSLEAAFVQYGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPF-SDRQAL-LKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI Y+Q +D + +KE+ + D G+ Sbjct: 61 RHGFLPFKEIARGYFQTEEDADLTKISIKEAIREGQELVVQVDKEERGN 109 >gi|260912695|ref|ZP_05919181.1| ribonuclease E [Pasteurella dagmatis ATCC 43325] gi|260633073|gb|EEX51238.1| ribonuclease E [Pasteurella dagmatis ATCC 43325] Length = 986 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 193/631 (30%), Positives = 312/631 (49%), Gaps = 19/631 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPDDYVYQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ LEVP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ +K Y +AK +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSQKVYEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE ++++++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ YLLN+KR I E R V + VV + F + + Sbjct: 431 LKENTKQVHTIVPVEIASYLLNEKRRAINNIEKRHDVDVIVVPNEAMETPHFSVFRVRDG 490 Query: 572 QALVNTGHKVG----------SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + + + ++ E++L + Sbjct: 491 EEVNELSYNLVKLHQEQDDHFVPEESLVSRNIEAAAVTTESVLESAAVSISIPTPAPVPE 550 Query: 622 EESTGVIR---KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ++ + + + + + + + + S N Sbjct: 551 KKVESKPSLLARIVAKIKALFASKPAEEEKSKNPRNRNNRNRRNQERRNNRRSRSENVER 610 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 E +++ + Sbjct: 611 ENTLKRNEEEVVARPSKSDRKRNRKANVVEN 641 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|213425011|ref|ZP_03357761.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646391|ref|ZP_03376444.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 1031 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 193/623 (30%), Positives = 306/623 (49%), Gaps = 12/623 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ A G+ S + + + + + Sbjct: 551 ---ATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Query: 689 NYDVSIPPVSTPEMESSNSSSDP 711 + + N + Sbjct: 608 PRQNNRRDRNERRDTRDNRARRD 630 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|289208369|ref|YP_003460435.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix] gi|288944000|gb|ADC71699.1| ribonuclease, Rne/Rng family [Thioalkalivibrio sp. K90mix] Length = 938 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 222/598 (37%), Positives = 318/598 (53%), Gaps = 35/598 (5%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K +P V I+E++K LLVQ+ KEERGNKGAA+TTY+SLAGRY VLMPN Sbjct: 71 KEIAPSAVGAPADSDKPIRELLKEGTQLLVQVEKEERGNKGAALTTYISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 K +SR+I + L+E GL +P GMGVI RTAG R+ E++ D +Y+ LW Sbjct: 131 NPKAGGVSRRIEGEDRAE-LREALSGLTMPDGMGVIARTAGVGRSTEELQWDLDYMTALW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E A + AP L+++E N+I RA+RD D+ E+I+ E Y++A+DF++L+MP+ Sbjct: 190 SAVTEAAEKANAPALIHQESNVIIRALRDHMRNDVGEVIIDDEAVYQQAEDFVRLVMPNS 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 R +++Y+DP P+F R IE Q++S +V LPS G ++I+ TEAL+SIDVNS RST+ Sbjct: 250 LRKLKKYDDPVPLFNRYQIESQIESAFDRDVQLPSGGALVIDHTEALISIDVNSARSTKG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA TNLEAAEE+ARQLR+RDL GLIV+DFIDM K+ R VE +L+E+L+ DRA Sbjct: 310 GDIEETAFHTNLEAAEEVARQLRVRDLGGLIVIDFIDMNANKHQREVENRLREALELDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQVG IS FGLLEMSRQR+RSS+ ES+ C C+G G +RS S+ALSILR +EE + Sbjct: 370 RVQVGRISRFGLLEMSRQRLRSSLGESSQITCPRCQGHGQVRSVESLALSILRLIEEEAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + ++ DV +LLN+KRA+I E EAR V I++V + F +++ + Sbjct: 430 KDRTGLVLAQVPVDVGTFLLNEKRASINEIEARHRVDISIVPNPQYLTPKFEVQRVRGDE 489 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQD-----------EALLPIPKSESLEDIQDNIV- 620 + + P + + + P P +ES + Sbjct: 490 REEVVSGRGSHELVEPVEEDTDTHGERRGKVEKPLVQGVKVKAPAPMAESPAPQAPSEPV 549 Query: 621 ---------------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 E+ R+R + +RP+ S + Sbjct: 550 QQPGFFTRIWSSLFPNAARNQEPEADEKDEGRKRGKGGQRPSR-GGGNSRGGGSSRRRGA 608 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 DD + +G+ E ++ + D K + Sbjct: 609 RDDGGENREAAKASGKGEARPDGSAAGDEGGKGRSRRRGGGTGGAATKTRDAEPKAAK 666 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 1/109 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+ EE RV ++ R+ +LD E +++ K NIY AK+TRVEPSL+AAFV++G Sbjct: 2 KRILINATQPEELRVAMVDGQRLYDLDIELPSRERKKANIYKAKITRVEPSLEAAFVNFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI P P +D ++E T + G+ Sbjct: 62 AERHGFLPFKEIAPSAVGAP-ADSDKPIRELLKEGTQLLVQVEKEERGN 109 >gi|194368574|pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein - Catalytic Domain gi|194368575|pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein - Catalytic Domain gi|194368576|pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein - Catalytic Domain gi|194368577|pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein - Catalytic Domain Length = 515 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 184/505 (36%), Positives = 282/505 (55%), Gaps = 8/505 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI 594 + + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSE 515 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|76811508|ref|YP_334299.1| ribonuclease E [Burkholderia pseudomallei 1710b] gi|76580961|gb|ABA50436.1| ribonuclease E [Burkholderia pseudomallei 1710b] Length = 1085 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 547 Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646 R R R + + Sbjct: 548 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 607 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704 + +N E + P Sbjct: 608 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 667 Query: 705 SNSSSDPIVKKTRW-WKRRK 723 ++ ++TR + R+ Sbjct: 668 RDNREGREARETREAREPRE 687 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|294141326|ref|YP_003557304.1| ribonuclease E [Shewanella violacea DSS12] gi|293327795|dbj|BAJ02526.1| ribonuclease E [Shewanella violacea DSS12] Length = 1139 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 206/635 (32%), Positives = 307/635 (48%), Gaps = 15/635 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EVIK Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYTFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK L VP GMG+I+RTAG + E+ D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALSELAVPNGMGLIVRTAGVGKDSAELAWDLKVLE 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W ++E ++ AP L+++E N+I RAIRD +D+ E+++ + + EAK + L+ Sbjct: 189 HHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P +A ++ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFADRIKHYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++++++ Sbjct: 309 TKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHL 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVSRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + +K+ + Y+ E E L + + Sbjct: 489 KDDQISEASYKLLEQPVSNLYEPRKLERATSPEPALKGFTAPVKAPEPKAKAAIAPKATE 548 Query: 629 RKRRRRR--------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + + P + S + N + N + E Sbjct: 549 EPGLIAKFFAAIGGLFKAEPKAEEPKKQSESPSQNRNNRRPARKNDSRRNDSRRNRDDKE 608 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 S + E S K+ Sbjct: 609 QSGDKNERTSRPSRNKRADSNEERSGKEQSDQGKR 643 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 62 ADRHGFLPLKEIAREYF 78 >gi|217420435|ref|ZP_03451940.1| ribonuclease E [Burkholderia pseudomallei 576] gi|217395847|gb|EEC35864.1| ribonuclease E [Burkholderia pseudomallei 576] Length = 1085 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 203/677 (29%), Positives = 317/677 (46%), Gaps = 51/677 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Query: 631 R-----------------------------------------RRRRRRRRPATDHHDAGV 649 R R + + Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGEKAE 610 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMESSNS 707 + +N E + P ++ Sbjct: 611 RGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGGRDN 670 Query: 708 SSDPIVKKTRW-WKRRK 723 ++TR + R+ Sbjct: 671 REGREARETREAREPRE 687 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|319425977|gb|ADV54051.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200] Length = 1126 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 214/643 (33%), Positives = 320/643 (49%), Gaps = 21/643 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 28 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 88 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A AP L+++E N+I RAIRD +D+ EI++ + Y EAK + L+ Sbjct: 207 HHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVR 266 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614 + + +K +A Y+ ++A P K E+ + Sbjct: 507 SDDEISESSYKRIEHPEAKLYEPRKLERTAAPTPALKGFAAPQKVEQAPSPTVKIEAPQP 566 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + T + + + T + D + + + Sbjct: 567 SFFSKLIGTITALFASSDKAEPAKTTETKNTDTNAANANRRNRRTDTRRPRNSQDADKAK 626 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + V++ E +S+ P +T+ Sbjct: 627 EGSREPRNRNAKKTAEPVAVATQERTVREKEDSAKRPAKVETK 669 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 80 ADRHGFLPLKEIAREYF 96 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 24/171 (14%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+G+PV+ V + + + + + ++ES ED + + Sbjct: 781 EEGTPVETAAIETASVDVVEMPVTVTADSSEMAEPLVVSQDNEAESAEDENTSADEQSKR 840 Query: 626 GVIRKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------- 670 +RR RR +R D D GV + + N + Y Sbjct: 841 EQRDGQRRSRRSPRHLRAAGQRRRRDEDDQGVSAPAQFVPNDELGADQEYPTEVTHSAHV 900 Query: 671 ---------SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + + E+ P ST E+E + P+ Sbjct: 901 TGPSSAPMVEAVKAETVEQAETVAVVEDTAPVTAPASTTEIEKIAIADAPV 951 >gi|88798807|ref|ZP_01114390.1| ribonuclease E [Reinekea sp. MED297] gi|88778570|gb|EAR09762.1| ribonuclease E [Reinekea sp. MED297] Length = 868 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 212/666 (31%), Positives = 330/666 (49%), Gaps = 42/666 (6%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D D+ I ++ A I E S+ +A + + Sbjct: 7 QAEELRVALVDGQKLYDLDIEAGFREQKKANIYKGRITRIEPSLEAAFVEFGAERHGFLP 66 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + K + I+E+IK ++VQ+ KEERGNKGAA+TT +SLAGRY VLM Sbjct: 67 LKEIAKEYFIDPKMSSRSNIKELIKEGTEVIVQVDKEERGNKGAALTTMVSLAGRYLVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN ++ ISR+I + ++E + + +P GMGVI+RTAG R+ E++ D +YL++ Sbjct: 127 PNNARAGGISRRIEGDERAQ-IREALQNVNLPDGMGVIVRTAGIGRSSEELQWDLDYLLQ 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW +++E + AP L+ +E N+I RAIRD +DI +++ + Y+ A DF++ +MP Sbjct: 186 LWGSIKEASQTRPAPFLILQESNVILRAIRDYLRQDIDAVMIDNKDAYQYALDFVQKVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 YA ++ YED P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T Sbjct: 246 GYANKIKLYEDTVPLFNRYQIETQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA TN+EAAEEIARQLRLRD+ GL+V+DFIDM + K+ R +E K+KE+ D Sbjct: 306 KGVDIEETAFNTNMEAAEEIARQLRLRDMGGLVVIDFIDMNQAKHQREIEAKIKEATTSD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G +S FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE Sbjct: 366 RARVQIGRLSRFGLLEMSRQRLRPSLGETSGIVCPRCNGHGTIRDVKSLSLAILRLIEEE 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ I V +LLN+KR I + E R V + VV ++ + + + Sbjct: 426 ALKDRTAQIRTIVPMAVATFLLNEKRDAISDIEKRHKVHVLVVPNPQMETPHYEVIRMRD 485 Query: 571 VQAL-----------------------VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 N + + + V Q+ Sbjct: 486 DDESLVSGEPSYAIKFEEQPLESETVLENQVKPQEAAISSIQAPRAPAPVAQEPEKPKTK 545 Query: 608 KSESLEDIQDNIVSEEST-----------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + + + + + ++ + + ++ D + S Sbjct: 546 APANKKPVAKAEPGLFARIGQWFSGLFEGEKEAPKAKKPVAKSGSGNNKDRRTDNKSKSN 605 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +S D ++ N ++ + V P + E + S +K Sbjct: 606 SKGNRNSSDRRGSSNNRRNGKPAKDTT---AKEKPVKKPVEAKTETNKAEKSETETTQKR 662 Query: 717 RWWKRR 722 KRR Sbjct: 663 SSVKRR 668 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 42/107 (39%), Positives = 65/107 (60%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD E+ ++Q K NIY ++TR+EPSL+AAFV++G Sbjct: 1 MLINATQAEELRVALVDGQKLYDLDIEAGFREQKKANIYKGRITRIEPSLEAAFVEFGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI +Y+ P ++ +KE T+ D G+ Sbjct: 61 RHGFLPLKEIAKEYFIDPKMSSRSNIKELIKEGTEVIVQVDKEERGN 107 >gi|330446423|ref|ZP_08310075.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490614|dbj|GAA04572.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1105 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 200/518 (38%), Positives = 296/518 (57%), Gaps = 6/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK L++P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ V+E A + AP L+++E N+I RAIRD +DI EI++ K + A+D +KL+ P Sbjct: 191 WNAVKEAADSQPAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q+DS Q EV LPS G V+I+ TEAL SID+NS R+T+ Sbjct: 251 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ VC C G G +R S++LSILR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ V YLLN+KR ++ E GV + +V ++ F + + Sbjct: 431 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + + +A + IE + + + Sbjct: 491 EEQDTLSYHIPKALEAMKEAEAIESPQPERIVKKREEP 528 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI DY YQ + ++ L + + + + Sbjct: 62 AERHGFLPLKEIAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 112 >gi|330942729|gb|EGH45265.1| ribonuclease E [Pseudomonas syringae pv. pisi str. 1704B] Length = 603 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 215/526 (40%), Positives = 309/526 (58%), Gaps = 5/526 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN 618 ++ + A + + I L+P + + N Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVPQEAAVKTAPARAN 533 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|68249015|ref|YP_248127.1| ribonuclease E [Haemophilus influenzae 86-028NP] gi|68057214|gb|AAX87467.1| ribonuclease E [Haemophilus influenzae 86-028NP] Length = 951 Score = 309 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 28 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 87 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 88 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 147 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 148 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 206 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 207 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 266 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 267 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 326 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 327 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 386 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 387 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 446 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 447 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 506 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 507 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 566 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 567 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 626 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 627 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 676 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 18 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 77 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 78 AERHGFLPLKEIAREYF 94 >gi|270261337|ref|ZP_06189610.1| ribonuclease E [Serratia odorifera 4Rx13] gi|270044821|gb|EFA17912.1| ribonuclease E [Serratia odorifera 4Rx13] Length = 1123 Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats. Identities = 198/634 (31%), Positives = 306/634 (48%), Gaps = 11/634 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 188 WEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 368 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLALSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR ++ E R GV +V ++ + + + Sbjct: 428 ALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQTPHYSVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + + + + P S SL D E Sbjct: 488 KGEETPTLSYLLPKLHEEEMAQPLDDAPMERKRPEQPALASFSL--AADAPPPAEEPVAA 545 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + A G++ + + S + + + G Sbjct: 546 QSAAAAVVAKPSAPTAAKPGLLGRLFGGLKALFASEEQPVVEAKPAVEAPKAEGNGENRR 605 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + E + R Sbjct: 606 QDRRGQRRQGSGRKERGERGERGERGERSDRPER 639 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|46143575|ref|ZP_00134935.2| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 992 Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 602 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + K R Sbjct: 603 KQTQTQDEQKAQRQERNQERNEAKKARRQ 631 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|329894957|ref|ZP_08270756.1| Ribonuclease E [gamma proteobacterium IMCC3088] gi|328922686|gb|EGG30021.1| Ribonuclease E [gamma proteobacterium IMCC3088] Length = 883 Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats. Identities = 205/590 (34%), Positives = 311/590 (52%), Gaps = 30/590 (5%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 K I++++K +++Q+ KEERGNKGAA+T+Y+SLAGRY VLMPN K I Sbjct: 80 KKGKAGDSSKIKDLVKEGTEIIIQVDKEERGNKGAAITSYISLAGRYMVLMPNNPKAGGI 139 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SR+I + L++ L +P GMGVI+RTAG R+ E++ D YL++LW+ + + A Sbjct: 140 SRRIEGDDRSQ-LRDAINELVIPDGMGVIVRTAGVGRSSEELQWDLNYLVQLWEAITKAA 198 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 AP L+++E N+I RA+RD DI ++++ + +REA DF+ L+MP Y ++ Y Sbjct: 199 DEFRAPTLLFQESNVIVRAVRDYLRDDIDQVLIDSTEAHREASDFVGLVMPQYRDRIKLY 258 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 EDP P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS ++TR IE+TA Sbjct: 259 EDPIPMFNRFQIEAQIETAFQREVRLPSGGSIVIDPTEALVSIDINSAKATRGGDIEETA 318 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 LQTNLEAA+EIARQLRLRD+ GL+V+DFIDM KN R VE +++++L DRARVQVG I Sbjct: 319 LQTNLEAADEIARQLRLRDMGGLVVIDFIDMLASKNQRLVENRIRDALAIDRARVQVGKI 378 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQR+R S+ E++ VC C G G IR S+ALSILR +EE ++ + Sbjct: 379 SRFGLLEMSRQRLRPSLGETSAIVCPRCTGQGIIRDTKSLALSILRLLEEEAIKDRTAEV 438 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 H DV YLLN+KR + EA V + V+ + F +++ + Sbjct: 439 RAHVPLDVAAYLLNEKRIALATIEANARVRVLVIPNPNMETPHFDVQRLRDDEVSGTREV 498 Query: 580 KVGSDSQAPSYD----KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 D P D ++ + + A+ I +++ E+ R R+++ Sbjct: 499 SYKVDVAVPDTDLFKVEDAKAKAPEAAVKSIAPTQAPAPAPKVDKKLEAKQPRRDNRKKQ 558 Query: 636 RRRRPA------------------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 ++ + D + + ++ E Sbjct: 559 HKKPKSLWQKIVHALFGEPKKAKPAEKKGKRDEETSNRRKPNENRNEQRNNERGTNNEGG 618 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + ++ + P ++ R +R Sbjct: 619 NKRRRRRPNKSRANNQTESEQQTNTEVSTDIVETAREDKP-KRRPRNQRR 667 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 43/77 (55%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KMLI+A+ EE RV ++ R+ +LD E+ + Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 2 KKMLINATQPEELRVALVDGQRLYDLDIENRTRTQKKANIYKGKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI P+YY Sbjct: 62 AERHGFLPLKEIAPEYY 78 >gi|237813218|ref|YP_002897669.1| ribonuclease E [Burkholderia pseudomallei MSHR346] gi|237505956|gb|ACQ98274.1| ribonuclease E [Burkholderia pseudomallei MSHR346] Length = 1088 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646 R R R + + Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704 + +N E + P Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670 Query: 705 SNSSSDPIVKKTRW-WKRRK 723 ++ ++TR + R+ Sbjct: 671 RDNREGREARETREPREPRE 690 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 Score = 37.3 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 1/110 (0%) Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 P E E + +E + R RR D + + Sbjct: 597 RPARERAERGERGEKAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGK 656 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 EP + + G E + P + E + ++ Sbjct: 657 ETREPREGREARGGRDNREGR-EARETREPREPREQREPREAREQREARE 705 >gi|92111361|gb|ABE73477.1| putative ribonuclease E [Photobacterium angustum S14] Length = 1078 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 201/556 (36%), Positives = 304/556 (54%), Gaps = 12/556 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK L++P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGEERTQ-LKAALSTLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ V+E A + AP L+++E N+I RAIRD +DI EI++ K + A+D +KL+ P Sbjct: 188 WNAVKEAADSQSAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q+DS Q EV LPS G V+I+ TEAL SID+NS R+T+ Sbjct: 248 FLSRVKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ VC C G G +R S++LSI R +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSIPRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ V YLLN+KR ++ E GV + +V ++ F + + Sbjct: 428 LKDNSSQVLAIVPVPVASYLLNEKRRSVQHIEKYHGVRVVIVPNSDMETPHFEVLRIREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------ESLEDIQDNIVSEEST 625 + + + +A + IE + + + + + + T Sbjct: 488 EEQDTLSYHIPKTLEALKEAEAIEAPQPERVIKKREEPVLQGFTAPKQPAPVAKPAAKPT 547 Query: 626 GVIRKRRRRRRRRRPA 641 + + ++P Sbjct: 548 PKVTAKPATESTKKPG 563 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 6/109 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP E+ DY YQ + ++ L + + + + Sbjct: 61 RHGFLPLKEVAKDYFPANYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 109 >gi|290475863|ref|YP_003468755.1| RNase E [Xenorhabdus bovienii SS-2004] gi|289175188|emb|CBJ81991.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation [Xenorhabdus bovienii SS-2004] Length = 1061 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 206/625 (32%), Positives = 318/625 (50%), Gaps = 10/625 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + E P + + I++++K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSSYHAHGRPNIKDILKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRIE-LKEALSSLELPEGMGLIVRTAGVGKSAEALQGDLNFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A N AP L+++E N+I RA RD DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADNHPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLARQHITALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A ++ Y P+F IE Q++S Q EV LPS G V+I+ TEAL +ID+NS R+T Sbjct: 251 DFASKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGSVVIDTTEALTAIDINSSRAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + E R G V + +V ++ F + + Sbjct: 431 ALKENTHQVHAIVPVQIASYLLNEKRKAVSAIEHRQGDVGVVIVPNDQMQTPHFSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + N + Q E P + S D+ V+ + Sbjct: 491 KGEEISTLSYLL--PQLHEAEMTNAQDDGQHERKRPEQPAISTFDLPAETVAPVAAKTKE 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 K+ ++ + + + I N ++ + +N N Sbjct: 549 KKVVVSNNQQIEQPGLFSRFLCALKKIFNGEEEKQEQEKSNKSSSNDNRRSPERRNSRRQ 608 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714 + + D K Sbjct: 609 NQRRERNENDTRNNHNRERGDEQRK 633 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|260597455|ref|YP_003210026.1| ribonuclease E [Cronobacter turicensis z3032] gi|260216632|emb|CBA29936.1| Ribonuclease E [Cronobacter turicensis z3032] Length = 1062 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 197/594 (33%), Positives = 306/594 (51%), Gaps = 10/594 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPASYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A N AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR I E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKREAITAIETRQGGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEESTGV 627 + + + +A + E + P + + D+ + Sbjct: 491 KGEETHTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFVMPDVPPMPQETSAPAAE 550 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + PA + + +S + S+ + + EP N + Sbjct: 551 PAAPKAPVKAAEPAKEGFLSRAISALKSLFASEPQAQPVASEPEPQPAKNREDK 604 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|319898066|ref|YP_004136263.1| ribonuclease e, RNA-binding protein [Haemophilus influenzae F3031] gi|317433572|emb|CBY81956.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3031] Length = 932 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 199/650 (30%), Positives = 324/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 69 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS+FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 368 ARIQISRISHFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 487 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 488 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAAVALSISEAAPTPVER 547 Query: 622 EESTG---------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + + + + + R + + D + ++ ++ Sbjct: 548 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRPSRRPRSENNEI 607 Query: 667 YMEPSDITN--HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + N E STP E+ ++P+ + Sbjct: 608 KRTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFETKEERTEPVTQ 657 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|53720058|ref|YP_109044.1| putative ribonuclease E [Burkholderia pseudomallei K96243] gi|126454922|ref|YP_001067110.1| ribonuclease E [Burkholderia pseudomallei 1106a] gi|254259231|ref|ZP_04950285.1| ribonuclease E [Burkholderia pseudomallei 1710a] gi|52210472|emb|CAH36455.1| putative ribonuclease E [Burkholderia pseudomallei K96243] gi|126228564|gb|ABN92104.1| ribonuclease E [Burkholderia pseudomallei 1106a] gi|254217920|gb|EET07304.1| ribonuclease E [Burkholderia pseudomallei 1710a] Length = 1088 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646 R R R + + Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704 + +N E + P Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670 Query: 705 SNSSSDPIVKKTRW-WKRRK 723 ++ ++TR + R+ Sbjct: 671 RDNREGREARETREAREPRE 690 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|242315148|ref|ZP_04814164.1| ribonuclease E [Burkholderia pseudomallei 1106b] gi|242138387|gb|EES24789.1| ribonuclease E [Burkholderia pseudomallei 1106b] Length = 1088 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646 R R R + + Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704 + +N E + P Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670 Query: 705 SNSSSDPIVKKTRW-WKRRK 723 ++ ++TR + R+ Sbjct: 671 RDNREGREARETREAREPRE 690 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|194368580|pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain gi|194368581|pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain gi|194368582|pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain gi|194368583|pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna Fragments - Catalytic Domain Length = 509 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 184/499 (36%), Positives = 281/499 (56%), Gaps = 8/499 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAP 588 + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEA 509 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|327393479|dbj|BAK10901.1| ribonuclease E Rne [Pantoea ananatis AJ13355] Length = 1095 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 188/518 (36%), Positives = 281/518 (54%), Gaps = 9/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPDGMGLIVRTAGVGKSAESLQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKDNTKEVHAIVPVPVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606 + + + + E + P Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPA 528 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|146329280|ref|YP_001209222.1| ribonuclease E [Dichelobacter nodosus VCS1703A] gi|146232750|gb|ABQ13728.1| ribonuclease E [Dichelobacter nodosus VCS1703A] Length = 1233 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 208/560 (37%), Positives = 305/560 (54%), Gaps = 6/560 (1%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P + I++++ Q +LVQI KEERGNKGAA+TTY+SLAGR+ VLMPN + Sbjct: 80 EPHDGADKSNIKDLLSVGQKVLVQIEKEERGNKGAALTTYVSLAGRFLVLMPNNPHAGGV 139 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SR+I K LK+ L VP MGVI+RTAG R+ E++ D ++L ++WD + Sbjct: 140 SRRIQGDER-KELKDYLEQLGVPEEMGVIIRTAGVGRSIEELQWDLDFLRQVWDAITAAY 198 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 N+ + L+Y+E N+I RA+RD D+ +I++ E+ Y++A DFM L+MPS ++ Y Sbjct: 199 HNTASQKLIYQESNIIVRALRDYLRPDVGQILIDDEQVYQQAMDFMNLVMPSSINKLKLY 258 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 +DP P+F R IE Q+++ +Q V LPS G ++I+ TEALVSID+NS +ST+ IE+TA Sbjct: 259 QDPTPLFTRYQIEGQIETAYQRNVKLPSGGELVIDYTEALVSIDINSSKSTKGCDIEETA 318 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 QTNLEAA+EIARQ+RLRD GLIV+DFIDM+ +N + VE++L ++ K DRAR+Q+G I Sbjct: 319 YQTNLEAADEIARQMRLRDFGGLIVIDFIDMDVSRNRKDVEQRLIDATKIDRARIQIGRI 378 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGLLEMSRQR+R+S+ E++ +VC CKG G IR S ALS+LR +EE ++ I Sbjct: 379 SRFGLLEMSRQRLRASIDEASHQVCPRCKGQGSIRGIQSQALSLLRLIEEEAMKDRTRRI 438 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 D+ +LLN+KR+ I E R V I + I L ++IE+ + Sbjct: 439 TGELPVDIATFLLNEKRSVIQSIEKRNHVDIVLTINPHLHSPDYFIERFRDDEMNEEMSA 498 Query: 580 KVG---SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + Q S + I D P+ S + + + Sbjct: 499 VPSYRLVNHQHNSEEMPILRPKDDRVEAPVVSSIMPQTPVPQAKGGAAVVKSGLSALFSK 558 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + H+ V V + + S +H E + P Sbjct: 559 VVALFKEGHNGHTVDAVLHKKEEKQTINESVTPTSKNVHH--EETAQPVREKPIVTPAPE 616 Query: 697 VSTPEMESSNSSSDPIVKKT 716 ST + S ++ VK+ Sbjct: 617 ASTVQTHESTPANGANVKRK 636 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 100/747 (13%), Positives = 207/747 (27%), Gaps = 49/747 (6%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD E+ + Q K NIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYTGTITRIEPSLEAVFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPF--SDRQALLK--------ESNIAQTDSEAVADDVTHGDV 112 RHGFLPF EI +Y P +D+ + I + + +T Sbjct: 62 STRHGFLPFKEIAKEYLAEPHDGADKSNIKDLLSVGQKVLVQIEKEERGNKGAALTTYVS 121 Query: 113 TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ----Y 168 L P A + D + + + R Sbjct: 122 LAGRFLVLMPNNPHAGGVSRRIQGDERKELKDYLEQLGVPEEMGVIIRTAGVGRSIEELQ 181 Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 + ++ + K + + + L P+ + D Sbjct: 182 WDLDFLRQVWDAITAAYHNTASQKLIYQESNIIVRALRDYLRPDVGQILI--------DD 233 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 + ++ + + + T + + E + + + Sbjct: 234 EQVYQQAMDFMNLVMPSSINKLKLYQDPTPLFTRYQIEGQIETAYQRNVKLPSGGELVID 293 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS--------YARIVRQYE 340 Y E + K + + A + + + + Sbjct: 294 YTEALVSIDINSSKSTKGCDIEETAYQTNLEAADEIARQMRLRDFGGLIVIDFIDMDVSR 353 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 + + R ++D + G + +++ SID S + + + Sbjct: 354 NRKDVEQRLIDATKIDRARIQIGRISRFGLLEMSRQRLRASIDEASHQVCPRCKGQGSIR 413 Query: 401 QTNLEA------AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +A EE A + R R + G + VD + RSV + +++ D Sbjct: 414 GIQSQALSLLRLIEEEAMKDRTRRITGELPVDIATFLLNE-KRSVIQSIEKRNHVDIVLT 472 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 + + + R R E + +S + ILR ++ + Sbjct: 473 INPHLHSPDYF-IERFRDDEMNEEMSAVP----SYRLVNHQHNSEEMPILRPKDDRVEAP 527 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +I+ T ++ + V G + K Q + Sbjct: 528 VVSSIMPQTPVPQAKGGAAVVKSGLSAL--FSKVVALFKEGHNGHTVDAVLHKKEEKQTI 585 Query: 575 VN--TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 T + + + + ++ V + + Sbjct: 586 NESVTPTSKNVHHEETAQPVREKPIVTPAPEASTVQTHESTPANGANVKRKEKSDDHDKH 645 Query: 633 RRRRRRRPATDHHDAGVVSDVSS---IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + + A +D V + + P D+ + Sbjct: 646 HAKPTPKAAKMENDDEVNPSLEELLHPVESKNGREVRKGRPRDVHAVRGQGKAPETMPDF 705 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 S T + + ++ I Sbjct: 706 EQSSDELKRTETVAHHDVKNERISDNK 732 >gi|301169115|emb|CBW28712.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Haemophilus influenzae 10810] Length = 932 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 200/650 (30%), Positives = 318/650 (48%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 487 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + + P ES E + Sbjct: 488 EEVNELSYNLAKIHCEKDESTEESLVSRNVDTTVVAEQPAVESAVVALSISEAAPTPVER 547 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 548 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 607 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 608 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 657 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|319775659|ref|YP_004138147.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047] gi|317450250|emb|CBY86466.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047] Length = 932 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 199/650 (30%), Positives = 317/650 (48%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 69 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 487 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + + P ES E + Sbjct: 488 EEVNELSYNLAKIHCAQDENTEESLVSRNVETTVVTEQPAVESAVVALSISEAAPTPVER 547 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 548 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 607 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 608 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 657 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|53725727|ref|YP_102317.1| ribonuclease E [Burkholderia mallei ATCC 23344] gi|121601250|ref|YP_993795.1| ribonuclease E [Burkholderia mallei SAVP1] gi|251767264|ref|ZP_02266561.2| ribonuclease E [Burkholderia mallei PRL-20] gi|254178087|ref|ZP_04884742.1| ribonuclease E [Burkholderia mallei ATCC 10399] gi|52429150|gb|AAU49743.1| ribonuclease E [Burkholderia mallei ATCC 23344] gi|121230060|gb|ABM52578.1| ribonuclease E [Burkholderia mallei SAVP1] gi|160699126|gb|EDP89096.1| ribonuclease E [Burkholderia mallei ATCC 10399] gi|243063306|gb|EES45492.1| ribonuclease E [Burkholderia mallei PRL-20] Length = 1090 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 298/540 (55%), Gaps = 7/540 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|1573386|gb|AAC22072.1| ribonuclease E (rne) [Haemophilus influenzae Rd KW20] Length = 951 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 28 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 87 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 88 EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 147 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 148 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 206 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 207 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 266 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 267 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 326 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 327 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 386 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 387 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 446 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 447 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 506 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 507 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 566 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 567 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 626 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 627 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 676 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 18 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 77 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 78 AERHGFLPLKEIAREYF 94 >gi|165976871|ref|YP_001652464.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876972|gb|ABY70020.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 995 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 202/654 (30%), Positives = 320/654 (48%), Gaps = 30/654 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI- 628 + L + + + N V ++ + ++E + + Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550 Query: 629 ---------------------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + + + + A + HD + + + + Sbjct: 551 VEPAKPSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQHDRRNRRERPNRVDRQERKQTQA 610 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + V E ++ S+ R +R Sbjct: 611 QDEQKAQRQERNQERNEAKKARRQVVEEVAGVQETQTEQRSNKDNATTERRQRR 664 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|126208900|ref|YP_001054125.1| ribonuclease E [Actinobacillus pleuropneumoniae L20] gi|126097692|gb|ABN74520.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 995 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 605 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + K R Sbjct: 606 KQTQTQDEQKAQRQERNQERNEAKKARRQ 634 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|330877843|gb|EGH11992.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4] Length = 504 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 212/497 (42%), Positives = 300/497 (60%), Gaps = 4/497 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSY 590 + + A S Sbjct: 488 EAHNSQTSYEIAAAGSA 504 Score = 137 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|296102898|ref|YP_003613044.1| ribonuclease E [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057357|gb|ADF62095.1| ribonuclease E [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1034 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 195/626 (31%), Positives = 310/626 (49%), Gaps = 13/626 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KRA + EAR GV +V ++ +++ + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPK----SESLEDIQDNIVSEES 624 + + + + + + E + P E+ + + + Sbjct: 491 KGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPESALEKPAAKP 550 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + +P G + + + + V + + + + Sbjct: 551 AAQKPAVAAKAEPAQPGLLSRFFGALKKMFAGEEVQPEQPKEEPKAAKPERQQDRRKRQN 610 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSD 710 + D S +N + Sbjct: 611 NRRDRNDRSDRNERRDNRSDNNEGRE 636 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|253996194|ref|YP_003048258.1| Rne/Rng family ribonuclease [Methylotenera mobilis JLW8] gi|253982873|gb|ACT47731.1| ribonuclease, Rne/Rng family [Methylotenera mobilis JLW8] Length = 920 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 208/618 (33%), Positives = 313/618 (50%), Gaps = 8/618 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 ++ A+ D D+ I + + + I E S+ +A D + Sbjct: 10 QSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYGQDRHGFLP 69 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K + + + IQ+ +K Q L+VQ+ K+ERGNKGAA+TT++SLAGRY VLMP Sbjct: 70 FKEVARSYYKEGADGRARIQDALKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I + L+++ LEVP GM +I RTAG R E++ D YL +L Sbjct: 130 NNPRGGGVSRRIEGEDRDE-LRDVLAQLEVPKGMSIIARTAGIGRNAEELQWDLNYLTQL 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + + +L+Y+EG+L+ RAIRD + DI EI++ + +A FM +MPS Sbjct: 189 WSAIDGASAMQAGAYLIYQEGSLVIRAIRDYFSSDIGEILIDTPDIHEQAVQFMNHVMPS 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V+ Y+D P+F R IE Q++S EV LPS G ++I+ TEALVS+DVNSGR+TR Sbjct: 249 NVARVKLYQDEIPLFTRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRATR 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA TNLEAAEE+ARQLRLRDL GL+V+DFIDME ++N R VE L+++L DR Sbjct: 309 GSDIENTAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMESQRNQREVENALRDALHADR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ G IS FGLLE+SRQR+R S+ E+ C C G G+IR S AL ILR +E Sbjct: 369 ARVQTGKISRFGLLELSRQRLRPSLGETNHIPCPRCHGTGHIRGIESTALHILRITQEDA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + I V +V +LLN+KRA I + E R GV + ++ I L + I + Sbjct: 429 MKENSAIIQVQLPVEVATFLLNEKRADIHKIEERMGVEVVLIPNIHLETPNYNIIRIKHD 488 Query: 572 QALVNTGHKVGSDSQAPSY----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 +T + PS K E + + + + E Sbjct: 489 DVNEDTSKASYQMVELPSETTYVSKAAEEAKAVKPVAAVKGITPAAPAPMPVEKVEPKLS 548 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + ++ ++ S + + ++ + + + Sbjct: 549 LFAKIKKFLGIGEKSEAEKGAEKSSDARRDHPRNNRNRNERNRNRSERNRNERGDKNANQ 608 Query: 688 ENYDVSIPPVSTPEMESS 705 E + + ++ Sbjct: 609 ERAPKNAEQKAQEPRQAE 626 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ +LD E K+Q K NIY +TR+EPSL+AAFVDYG Sbjct: 2 KRMLFNATQSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ YY+ +D +A ++++ + D G+ Sbjct: 62 QDRHGFLPFKEVARSYYK-EGADGRARIQDALKEGQELIVQVDKDERGN 109 >gi|329122288|ref|ZP_08250876.1| ribonuclease E [Haemophilus aegyptius ATCC 11116] gi|327473849|gb|EGF19266.1| ribonuclease E [Haemophilus aegyptius ATCC 11116] Length = 935 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 199/650 (30%), Positives = 324/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS+FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISHFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAAVALSISEAAPTPVER 550 Query: 622 EESTG---------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + + + + + R + + D + ++ ++ Sbjct: 551 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRPSRRPRSENNEI 610 Query: 667 YMEPSDITN--HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + N E STP E+ ++P+ + Sbjct: 611 KRTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFETKEERTEPVTQ 660 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|148827613|ref|YP_001292366.1| ribonuclease E [Haemophilus influenzae PittGG] gi|148718855|gb|ABQ99982.1| ribonuclease E [Haemophilus influenzae PittGG] Length = 935 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 321/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|134277542|ref|ZP_01764257.1| ribonuclease E [Burkholderia pseudomallei 305] gi|134251192|gb|EBA51271.1| ribonuclease E [Burkholderia pseudomallei 305] Length = 1093 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 204/680 (30%), Positives = 318/680 (46%), Gaps = 54/680 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 12 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 132 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 190 Query: 273 DNVRELALNSV--APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++MP Sbjct: 191 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 251 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 311 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 371 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 431 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A ++ ++ + + E + A P+ E+ S R+ Sbjct: 491 DDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQ 550 Query: 631 R--------------------------------------------RRRRRRRRPATDHHD 646 R R R + + Sbjct: 551 SAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGE 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEMES 704 + +N E + P Sbjct: 611 KAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARGG 670 Query: 705 SNSSSDPIVKKTRW-WKRRK 723 ++ ++TR + R+ Sbjct: 671 RDNREGREARETREAREPRE 690 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 110 >gi|229846500|ref|ZP_04466608.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1] gi|229810593|gb|EEP46311.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1] Length = 935 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 192/606 (31%), Positives = 315/606 (51%), Gaps = 17/606 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + + V ++ + + ++E + E+ +R Sbjct: 491 EEVNELSYNLAKIHCEKDENTEESLVSRNIETTAVIEQPAVESAAVALSISEAAPTPVER 550 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + ++ +++ + + + + +P + + Sbjct: 551 K-----------SNEPSLLAKIIAKIKGLFAAKSEENKPKNNRTSRNPNRNQRRSQDRRT 599 Query: 692 VSIPPV 697 P Sbjct: 600 SRRPRS 605 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|308272368|emb|CBX28973.1| Ribonuclease G [uncultured Desulfobacterium sp.] Length = 509 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 272/565 (48%), Gaps = 59/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K++++ ETRV +L D + E E + I GNIY +V RV P +QA Sbjct: 1 MYKKIVVNVCE-HETRVALLEDGNIAEFFIERGNISDIAGNIYKGRVQRVLPGMQA---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I + DD++ G + Sbjct: 56 ---------AFIDIG--------------------INQAAFIYVDDLSIGGFDESKPCNP 86 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E N S E N+++ I ++I Q L Sbjct: 87 VEAQTADNVSSYPETTHFSKKNHELK-----------------------IGDLITEGQEL 123 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L Q+ K G KGA VT+Y +L GR+ VLMPN+ +SR+I N +R LKE+ L Sbjct: 124 LAQVAKPPIGTKGARVTSYPTLPGRFVVLMPNSDHIG-VSRRIENEKERNRLKEMVISLR 182 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G I+RTA + ++ + +L+ LW N+++ + AP L+++E + RA R Sbjct: 183 KE-NYGYIVRTAAEGIHEESLENEMNFLINLWKNIQQKYKTAAAPSLLHKELTVCLRAAR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL + ++I+ Y F+ MPS V YE PIF +E + + Sbjct: 242 DLLMHEADKMIIDSRPDYESVLSFLDTFMPSLKSAVELYEGNEPIFDAYNLEGDVSRALR 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L S GY+II TEALV+IDVN+GR +H +E+T L+TNLEA +EIA Q+RLRD+ Sbjct: 302 RKIWLKSGGYIIIEHTEALVAIDVNTGRYVGKHNLEETILKTNLEAVKEIAYQIRLRDIG 361 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME+K+N V +E+L KD+++ + IS GL++M+R+RIRS ++++ Sbjct: 362 GIIIIDFIDMEKKQNQEKVFNAFREALVKDKSKTNILPISEMGLIQMTRKRIRSPLIQAL 421 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G G + S+ ++ +I R ++ L I +H H ++ L ++ I+ Sbjct: 422 CEPCFYCEGEGKLLSRQTICYNIYREIQRESLDMAGSKIALHVHPEIAELLHVEENHLII 481 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E G I + E + F I Sbjct: 482 SLEKMIGRQIVIYPESEYHLQEFEI 506 >gi|82408148|pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E gi|82408201|pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer Rna gi|82408258|pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E Length = 517 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 184/499 (36%), Positives = 281/499 (56%), Gaps = 8/499 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 19 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 78 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 79 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 138 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 139 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 197 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 198 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 257 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 258 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 317 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 318 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 377 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 378 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 437 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 438 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 497 Query: 570 PVQALVNTGHKVGSDSQAP 588 + + + + Sbjct: 498 KGEETPTLSYMLPKLHEEA 516 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 9 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 68 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 69 AERHGFLPLKEIAREYF 85 >gi|317401916|gb|EFV82522.1| ribonuclease E [Achromobacter xylosoxidans C54] Length = 794 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 206/620 (33%), Positives = 302/620 (48%), Gaps = 66/620 (10%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR++ ++ L++ LE+P GM +I RTAG R E++ D YL++L Sbjct: 131 NNPRGGGVSRRVEGEDRQE-LRDTMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQL 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + A ++ AP L+Y E +L+ RAIRD + +I EI++ ++ +A FM ++MP Sbjct: 190 WTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPD 249 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALVS+DVNS RSTR Sbjct: 250 NVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARSTR 309 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL+TN EAA+E+ARQLRLRDL GLIV+DFIDME+ KN R+VE++L+++L DR Sbjct: 310 GADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDR 369 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGL+E+SRQR+R ++ E + C C G G IR S AL +LR ++E Sbjct: 370 ARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALHVLRLLQEEA 429 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV YLLN+KRA I + EAR V++ ++ L +IE+ Sbjct: 430 MKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLVLIPNKHLETPHHHIERLRHD 489 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP------------------------ 607 + +AP+ D + + P Sbjct: 490 DPRLEEVKTSFELVEAPATDAPWQPRESEIKARPEALVKGITPSQPAPVSTPAPAPAPAA 549 Query: 608 -------------------KSESLEDIQDNIVSE---------------------ESTGV 627 SE + E E G Sbjct: 550 APAQSGGGLLKRLFGWLTGNSEPAKTASAAAQEETGAKRAASPARGKGRGAHDGQERRGE 609 Query: 628 IRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R RR T+ + G N + + N+ Sbjct: 610 RHGSDRNRNRRGESRTEGAEGGEGGRHHIRGNRRPEGERGERQERGERNNRNERGERDQA 669 Query: 687 TENYDVSIPPVSTPEMESSN 706 + S P PE + Sbjct: 670 VQAAQASNRPDVAPEAAGDD 689 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ +LD E+ ++Q KGNIY +TR+EP L+A FV+YG Sbjct: 2 KRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF E+ +++ R A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGN 110 >gi|307250703|ref|ZP_07532639.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857261|gb|EFM89381.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 992 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 314/629 (49%), Gaps = 13/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 602 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + + N + K R Sbjct: 603 KQTQVQDEQKAQRQERNQERNEAKKARRQ 631 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|260580524|ref|ZP_05848352.1| ribonuclease E [Haemophilus influenzae RdAW] gi|260092866|gb|EEW76801.1| ribonuclease E [Haemophilus influenzae RdAW] Length = 947 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 24 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 83 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 84 EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 143 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 144 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 202 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 203 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 262 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 263 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 322 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 323 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 382 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 383 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 442 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 443 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 502 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 503 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 562 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 563 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 622 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 623 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 672 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 14 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 73 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 74 AERHGFLPLKEIAREYF 90 >gi|323247715|gb|EGA31659.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 709 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 193/600 (32%), Positives = 303/600 (50%), Gaps = 16/600 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + +A + E + P + ++ D+ E + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY----MEPSDITNHNLLENGAH 684 ++ A G+ S + + + P ++ Sbjct: 551 ---ATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRK 607 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|311280009|ref|YP_003942240.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1] gi|308749204|gb|ADO48956.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1] Length = 1051 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 187/534 (35%), Positives = 289/534 (54%), Gaps = 9/534 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLQLPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E+R GV +V ++ + + + Sbjct: 431 ALKENTKEVHAIVPVPIASYLLNEKRDAVSAIESRQGGVRCIIVPNEQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + + + + + + E + P + + D E Sbjct: 491 KGEETQTLSYLLPKLHEEEMALPSDEEPAERKRPEQPALATFVMPDTPPAPDVE 544 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|145634590|ref|ZP_01790299.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA] gi|145268135|gb|EDK08130.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA] Length = 935 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 551 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|260582323|ref|ZP_05850116.1| ribonuclease G and E [Haemophilus influenzae NT127] gi|260094691|gb|EEW78586.1| ribonuclease G and E [Haemophilus influenzae NT127] Length = 937 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 321/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I + E S+ +A D + Sbjct: 14 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLK 73 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 74 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 133 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 134 NNPRAGGISRRIEGDERTE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 192 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 193 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 252 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 253 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 312 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 313 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 372 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 373 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 432 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 433 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 492 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 493 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 552 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 553 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 612 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 613 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 662 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 1 MA-NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY +TRVEPSL+AAFV Sbjct: 1 MTMKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFV 60 Query: 60 DYGGNRHGFLPFLEIHPDYY 79 DYG RHGFLP EI +Y+ Sbjct: 61 DYGAERHGFLPLKEIAREYF 80 >gi|120599253|ref|YP_963827.1| ribonuclease [Shewanella sp. W3-18-1] gi|146292673|ref|YP_001183097.1| ribonuclease [Shewanella putrefaciens CN-32] gi|120559346|gb|ABM25273.1| RNAse E [Shewanella sp. W3-18-1] gi|145564363|gb|ABP75298.1| RNAse E [Shewanella putrefaciens CN-32] Length = 1128 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 215/643 (33%), Positives = 320/643 (49%), Gaps = 21/643 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 28 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 88 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A AP L+++E N+I RAIRD +D+ EI++ + Y EAK + L+ Sbjct: 207 HHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVR 266 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614 + + +K +A Y+ ++A P K E+ + Sbjct: 507 SDDEISESSYKRIEHPEAKLYEPRKLERTAAPTPALKGFAAPQKVEQAPSPTVKIEAPQP 566 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + T + + + T + D + + + Sbjct: 567 SFFSKLIGTITALFASSDKAEPAKTTETKNTDTNAANANRRNRRTDTRRPRNSQDADKAK 626 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N + V++ E +S+ P +T+ Sbjct: 627 EGNREPRNRNAKKTAEPVAVATQERAVREKEDSAKRPAKVETK 669 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 80 ADRHGFLPLKEIAREYF 96 >gi|296444933|ref|ZP_06886895.1| ribonuclease, Rne/Rng family [Methylosinus trichosporium OB3b] gi|296257601|gb|EFH04666.1| ribonuclease, Rne/Rng family [Methylosinus trichosporium OB3b] Length = 982 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 276/472 (58%), Positives = 346/472 (73%), Gaps = 3/472 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + +RQY IQEVIK RQ+LLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMPNT+ Sbjct: 278 DEAPYRATRPRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 337 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G ISRKIT+ DRK LKEI + LEVP GMGVILRTAGA+RTK E+KRDFEYL+R+W++ Sbjct: 338 RGGGISRKITDGADRKRLKEIVQELEVPEGMGVILRTAGATRTKAEVKRDFEYLLRMWES 397 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 VREL L S A LVYEEG+LIKRAIRDLY +D+ E+IVSGE+ YREAKDFM++L+PS+A+ Sbjct: 398 VRELTLRSSAATLVYEEGSLIKRAIRDLYGRDVEEVIVSGEESYREAKDFMRMLIPSHAK 457 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 VR Y +P PIF +G E QLD+L +VTL S GY++INQTEALV+IDVNSGRSTREH Sbjct: 458 NVRLYREPTPIFASAGAESQLDALFSNQVTLKSGGYLVINQTEALVAIDVNSGRSTREHN 517 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IEDTAL+TNLEAA+E+ARQLRLRDLAGLIVVDFIDMEE +NNR+VE++LK++LK DRAR+ Sbjct: 518 IEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLKDALKNDRARI 577 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 QVG IS+FGLLEMSRQRIR+ VLE +T C +C GAG +RS +S+AL +LR +E+ L++ Sbjct: 578 QVGRISHFGLLEMSRQRIRAGVLEGSTVPCPHCAGAGTVRSTASIALHVLRVLEDALIKS 637 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF-YIEKGSPVQ- 572 AH+II+ T + V LY+LNQKR + E RFGV+I V L + +E+G P Sbjct: 638 AAHDIILRTRTVVALYILNQKRTHLQGLERRFGVAITVSADDSLTGTSYHALERGEPASG 697 Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + P ++ + + E E + Sbjct: 698 VRELPAAQQPLRAGAPPVDLEDEIEEIDEVETTELEAREREERPVAAQRPPQ 749 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 81/141 (57%), Positives = 93/141 (65%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASH EETRVVVLR NRV+E DFE+ KK ++GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDASHPEETRVVVLRGNRVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR ALL+E + A + + S Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRIALLEEESRAHQQEDEEPRAHGGRRRSRRRHDSA 120 Query: 121 EEVAPIANFSQETEEESIISA 141 E+ A + + A Sbjct: 121 EKRAASGDSVTSENAPADEEA 141 >gi|212712797|ref|ZP_03320925.1| hypothetical protein PROVALCAL_03894 [Providencia alcalifaciens DSM 30120] gi|212684489|gb|EEB44017.1| hypothetical protein PROVALCAL_03894 [Providencia alcalifaciens DSM 30120] Length = 1063 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 197/547 (36%), Positives = 303/547 (55%), Gaps = 8/547 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + E P + + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ +++D Y +R Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSCLEIPEGMGLIVRTAGVGKSAESLQQDLLYRLRH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330 W+ +++ A N AP L+++E N+I RA RD DI EI++ K A++ ++ + Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIEAIGRG 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LS+LR +EE Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSVLRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + E E R V + +V ++ F++ + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRQAVTEIEQRQRNVRVVIVPNDQMQTPHFHVIRIR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + ++ E + +A S + + + Sbjct: 491 KGEEVQTLSYNLAQYHETETLNQGEEPTSERKAPEQPAISAFALQEPVEVPALKQKESPS 550 Query: 630 KRRRRRR 636 K R + Sbjct: 551 KAPARPK 557 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|118602451|ref|YP_903666.1| ribonuclease [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567390|gb|ABL02195.1| ribonuclease, Rne/Rng family [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 584 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 160/637 (25%), Positives = 293/637 (45%), Gaps = 82/637 (12%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI+A + EE RV ++++ ++ L+ E+ K+ KGNIY K++RVE SL+AAFVDYG Sbjct: 4 ILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDYGKE 63 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 + GFLPF E+ + D +A + +T DV + ++ Sbjct: 64 KQGFLPFKEV------------------AETLHNDVKAKGEKLTISDVLKEGQEIIVQIE 105 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 + G+ Y I + + + Sbjct: 106 KEERGN-----------------------KGAALSTYINLAGAYMILMPNNPKNHGISRQ 142 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 + + + + L +++ G + + + + L Sbjct: 143 IVALDRQSLKEIISKIILPNHSGLIIRTAGSG-------KSFEELQWEVDYLSDLWKSIN 195 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304 + R+A L+Y+E ++I R +RD Sbjct: 196 TATLTRSAP--------------------------------FLIYQESDIIIRTLRDHLR 223 Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE-DPHPIFFRSGIEVQLDSLHQTEV 363 D +I+ + ++ AK+F+ ++P Y ++ ++ H +F GIE Q+ S+ EV Sbjct: 224 SDTDSVIIDELEAFQNAKEFVSFVLPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREV 283 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 +L + ++ + TEAL +ID+NS R+T+ IE+TA TNLEA +EIA QL+LRD+ GL+ Sbjct: 284 SLRTGAIIVFDPTEALTAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLV 343 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDM +++ S+EK ++++ DRAR+Q+G IS FGLLEMSRQR+ +SV ES K Sbjct: 344 VIDFIDMASEEHRVSIEKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKP 403 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEY 542 C+ C G G + ++AL+ILR +E+ ++ + + +V+ Y+LN+KR I++ Sbjct: 404 CSACHGRGTTPTIPTLALTILRQLEDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKL 463 Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E + G+ I ++ + F I K + + ++ S Q + + + A Sbjct: 464 EGKHGIKITLLPNPYMQFPNFTINKQKGSKRSQHKSYQSISKPQHVLAENGLSDQAEIPA 523 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + S + + + ++ + + +++++ + R Sbjct: 524 INVNRPSTRVPEKKISLFEKIKNVLFGRKKKQPNKHR 560 >gi|332141129|ref|YP_004426867.1| RNase E [Alteromonas macleodii str. 'Deep ecotype'] gi|327551151|gb|AEA97869.1| RNase E [Alteromonas macleodii str. 'Deep ecotype'] Length = 1134 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 211/662 (31%), Positives = 322/662 (48%), Gaps = 36/662 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + KF+ + I++VIK Q +++QI KEERG KGAA+TT+LSLAG Y VLMP Sbjct: 72 EIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ E++ D + L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKESLSKLDLPDGMGLIVRTAGVGKSYEELEWDLKVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ + E+A AP L+++E N+I RAIRD +DI EI++ Y +A ++L+ P Sbjct: 191 WEAISEVAEGREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A V+ Y P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++K++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ ES VC C G G IR S+ALSILR +EE Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLALSILRILEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ I V YLLN+KR +I E R GV + ++ L + + + P Sbjct: 431 IKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTPHYQVLRRRPD 490 Query: 572 QALVNTGHKV----------------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + V + P+ + ++ ED+ Sbjct: 491 DVVSEASYDVELMPAVEAETETTTTTPVKREEPALKGLVAPTAAPVVAPKEEPAKKAEDV 550 Query: 616 QD--------------NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 + EES +++ + R ++ + + Sbjct: 551 PSLFARIGKWISDLFGSEGEEESNKDKKQQSTDTNKNRNNRSRNNDDRRRKPRNKNQRRN 610 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 +S + D +N + D + + + + Sbjct: 611 NSSQNRDQNKDQGRDEQQDNRKARGDQRQDQRQDQDDKRNNKGRKPRKAQQPRDEQQKPK 670 Query: 722 RK 723 + Sbjct: 671 HE 672 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 62 AERHGFLPLKEIARTYF 78 >gi|307248485|ref|ZP_07530504.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855004|gb|EFM87188.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 992 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 602 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + K R Sbjct: 603 KQTQAQDEQKAQRQERNQERNEAKKARRQ 631 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|261346053|ref|ZP_05973697.1| ribonuclease E [Providencia rustigianii DSM 4541] gi|282565939|gb|EFB71474.1| ribonuclease E [Providencia rustigianii DSM 4541] Length = 1069 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 193/542 (35%), Positives = 297/542 (54%), Gaps = 8/542 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + E P + + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ +++D Y +R Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSCLEIPDGMGLIVRTAGVGKSAESLQQDLLYRLRH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330 W+ +++ A N AP L+++E N+I RA RD DI EI++ K A++ ++ + Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIESIGRG 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LS+LR +EE Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLSLSVLRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + + E R V + +V ++ F++ + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRQAVTDIEQRQRNVRVVIVPNDQMQTPHFHVIRIR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + E + P + + + Sbjct: 491 KGEEISTLSYNLAQYHETETLAHADEPSSSERKAPEQPAISAFALQEPVEMPALKPKEAP 550 Query: 630 KR 631 + Sbjct: 551 AK 552 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|307246358|ref|ZP_07528435.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253093|ref|ZP_07534975.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255344|ref|ZP_07537155.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257513|ref|ZP_07539278.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259794|ref|ZP_07541513.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261925|ref|ZP_07543584.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306852734|gb|EFM84962.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306859428|gb|EFM91459.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861695|gb|EFM93678.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863983|gb|EFM95901.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866133|gb|EFM98002.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868376|gb|EFN00194.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 992 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 602 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + K R Sbjct: 603 KQTQAQDEQKAQRQERNQERNEAKKARRQ 631 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|254435343|ref|ZP_05048850.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27] gi|207088454|gb|EDZ65726.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27] Length = 761 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 216/646 (33%), Positives = 322/646 (49%), Gaps = 31/646 (4%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149 A+ A+ D D+ I N ++ A I E S+ + D ++ + Sbjct: 8 AEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYGADRQGFLPL 67 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ++V + + + +Q+V+K Q L+VQ+ KEERGNKGAA++T++SLAGRY VL Sbjct: 68 KEVTRSYFQSHQGESGDRPKVQDVLKEGQELVVQVEKEERGNKGAALSTFISLAGRYLVL 127 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + +SR+I L E R LE+P GMG+I RTA + E++ D YL+ Sbjct: 128 MPNNPRAGGVSRRIEGEERS-MLLEAMRTLEIPEGMGLITRTAAVGKNAEELQWDLNYLL 186 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 LW +++ A AP L+Y+E ++I RA+RD DI EI++ Y+ A DFM+ +M Sbjct: 187 HLWHSIQAAAEGRPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQRAYDFMRQVM 246 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P R ++ Y+D +F R IE Q+++ Q EV LPS G ++++ TEAL +ID+NS R+ Sbjct: 247 PPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALTTIDINSARA 306 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + IE+TAL TNLEAAEEIARQLRLRDL GLIV+DFIDM +N R+VE +L+E L++ Sbjct: 307 NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 366 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E+ VC C G G +R S+ LS+LR +EE Sbjct: 367 DRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLGLSVLRLIEE 426 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + +++ V +LLN+KRA + E R+G + +V L +F IE+ Sbjct: 427 GAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFLVPNSHLETPVFEIERIK 486 Query: 570 PVQALV---------------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 V N PS + V L P P+ + + Sbjct: 487 DVGKGESRVDKRFEMQSYQMANEPSPKKPALLTPSAIPDEPLVKAGSPLFPKPEPQPVAP 546 Query: 615 IQDNIVSEE--------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + + + + + + G + Sbjct: 547 KAEPDFLRRFWTAFMKGDQELDVAEVVTQETEVVSEETGERGRLPPRRGRSQGRGRRGSG 606 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES-SNSSSDP 711 +G E+ + T +M++ + SSS P Sbjct: 607 RQHNRKENTQGNEGSGVSSGAESGQAASEAKETQDMQNGTESSSAP 652 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 38/76 (50%), Positives = 53/76 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+H EE RV ++ +++LD E+ ++Q K NIY K+TR+EPSL A FVDYG + Sbjct: 1 MLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYGAD 60 Query: 65 RHGFLPFLEIHPDYYQ 80 R GFLP E+ Y+Q Sbjct: 61 RQGFLPLKEVTRSYFQ 76 >gi|154248587|ref|YP_001419545.1| ribonuclease [Xanthobacter autotrophicus Py2] gi|154162672|gb|ABS69888.1| ribonuclease, Rne/Rng family [Xanthobacter autotrophicus Py2] Length = 1080 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 297/560 (53%), Positives = 377/560 (67%), Gaps = 1/560 (0%) Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 L+E+ +T + D T + E + ++ + + Sbjct: 253 LREAPEGETHPAPILDIEETPAETRRTETRPVEDDEDEDEDDGDVDQIDEEEEIEHLGAD 312 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ED PE P++ R Y IQEVI+ RQ++LVQ+VKEERGNKGAA+TTYLSLAGRYSVL Sbjct: 313 EDALEEVPERAPQRRARSYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVL 372 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPNT++G ISRKITN VDRK LKE+ + LEVP GMG+ILRTAGA+RTK+EIKRDFEYL+ Sbjct: 373 MPNTARGGGISRKITNTVDRKRLKEVVQDLEVPEGMGIILRTAGANRTKVEIKRDFEYLL 432 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLW+ VREL L+S AP+LVYEEG+LIKRAIRDLY KDI E+ V+GE+GYREAKDFM++LM Sbjct: 433 RLWETVRELTLSSAAPNLVYEEGSLIKRAIRDLYNKDIDEVHVAGEEGYREAKDFMRMLM 492 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS+A+ V Y +P PIF R G+E QLD++ V L S GY++IN TEALVSIDVNSGR+ Sbjct: 493 PSHAKCVLPYREPQPIFARYGVEQQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRA 552 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TREH IEDTAL+TN+EAAEEIARQLRLRDLAGLIVVDFIDMEEK+NNR+VE+KLK+ LK Sbjct: 553 TREHHIEDTALKTNVEAAEEIARQLRLRDLAGLIVVDFIDMEEKRNNRAVERKLKDCLKN 612 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS+FGLLEMSRQRIR+ VLES+ +VC +C G G++RS +SV+L +LR++EE Sbjct: 613 DRARIQIGRISHFGLLEMSRQRIRTGVLESSIEVCPHCGGTGHVRSAASVSLQLLRALEE 672 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKG 568 LL+ HN+ T ++V LY+LNQKRA + E E RF V++ +V + + F IEKG Sbjct: 673 QLLRAATHNLYARTRTEVALYVLNQKRAHLRELEERFSVTLAIVADESVTGHQPFIIEKG 732 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 +DE + E + Sbjct: 733 ELAVPPAPAPRPSSVVHPDSILLDEDYAEDEDEETVEETAEAEAEAGPEAEGESGDRADD 792 Query: 629 RKRRRRRRRRRPATDHHDAG 648 R+RRRRRRR + + Sbjct: 793 GNRKRRRRRRRRRGEKDETR 812 Score = 177 bits (448), Expect = 6e-42, Method: Composition-based stats. Identities = 75/155 (48%), Positives = 96/155 (61%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE D+ES +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR AL++E A ++ A+ S Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRLALIEEEERAARLADDEAELKDRRRERGRARRSS 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155 + + + + + + + Sbjct: 121 SDRTVSEPVEEAEVVPAEAESASGDAPSGVEASSD 155 >gi|307264115|ref|ZP_07545711.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870544|gb|EFN02292.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 992 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 199/625 (31%), Positives = 312/625 (49%), Gaps = 13/625 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 188 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 368 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 428 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 487 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 488 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 548 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 602 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714 + + N + K Sbjct: 603 KQTQAQDEQKAQRQERNQERNEAKK 627 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 >gi|304391819|ref|ZP_07373761.1| ribonuclease E [Ahrensia sp. R2A130] gi|303296048|gb|EFL90406.1| ribonuclease E [Ahrensia sp. R2A130] Length = 1080 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 288/631 (45%), Positives = 379/631 (60%), Gaps = 5/631 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151 + S+ D + + E S++ V Sbjct: 368 DDEAVAEASDGDDSDAEEKPRSRRGRGRGRGGRSRGRRGENNGSEDETSSDAPVEEVGSP 427 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + +R Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSVLMP Sbjct: 428 EDALEEVPARRAPRRHYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMP 487 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 NT++G ISRKITN DRK LK IA LEVP GMGVILRTAGASR + +++RDFEYLMRL Sbjct: 488 NTARGGGISRKITNSADRKRLKSIATSLEVPQGMGVILRTAGASRERTDVERDFEYLMRL 547 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+NVR L L S AP LVYEEG+LIKR+IRDLY D EI+V+GE GY+EA+DFM +LMPS Sbjct: 548 WENVRTLTLESTAPCLVYEEGSLIKRSIRDLYDHDTGEILVAGEAGYKEARDFMSMLMPS 607 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 +A+ V+ Y D P+F R G+E QLD++ Q +VTL S GY+II+QTEALV+IDVNSGRSTR Sbjct: 608 HAQRVKLYSDRIPLFARMGVEAQLDAMLQPQVTLKSGGYIIIDQTEALVAIDVNSGRSTR 667 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +H +E+TA+ TNLEAA+E+ARQLRLRDLAGLIV+DFIDM++++N R+VEK+LK++LK+DR Sbjct: 668 QHSVEETAVNTNLEAADEVARQLRLRDLAGLIVIDFIDMDDRRNVRAVEKRLKDALKQDR 727 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+QVG IS+FGL+EMSRQRIR+SVLESTT++CT C+G G++RS SSV LS+LR+VEE+L Sbjct: 728 ARIQVGRISHFGLMEMSRQRIRASVLESTTQICTMCEGLGHVRSSSSVVLSVLRAVEEHL 787 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + +A+++ V S LY+LN KR + + EARFGV+I V L + IEKG Sbjct: 788 NRSSANDLTVKVSSATALYMLNGKRDNLSDLEARFGVAITVATDESLGNTPCAIEKGELS 847 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS-----EESTG 626 V D+ D + + P +E ED + Sbjct: 848 NRTPVADTAVHPDTIEVQADDDTGNAVAETPSDEQPATERNEDGEGTGKKRRRRRRRGGR 907 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R + + + +A + + DD + P+ Sbjct: 908 GRDDNRDENGEAKASEEGANAQSGDAEAQSEPTSDDEGEAPQRPARTKRSRRKPKAEAET 967 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + + P ++TR Sbjct: 968 ASEGQAVTENTAAEDASTEEDVPKPTGRRTR 998 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 93/157 (59%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA H EETRV +++ N+V E DFESEHK QI+GNIYLAKVTRVEPSLQAAFVDY Sbjct: 3 NNKMLIDAGHPEETRVAIVKGNQVAEFDFESEHKTQIRGNIYLAKVTRVEPSLQAAFVDY 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F E+HPDYYQIP +DRQAL+ + A + + + Sbjct: 63 GGNRHGFLAFSEVHPDYYQIPVADRQALIDAEAEDARNHAAREAEADAAIDQQDDQSDDD 122 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 + + E ++ + E+ S + Sbjct: 123 NDSDSDDNEVEAAPKTRKRRSRRRSPRNEETSEESDD 159 >gi|30995373|ref|NP_438575.2| ribonuclease E [Haemophilus influenzae Rd KW20] gi|1173095|sp|P44443|RNE_HAEIN RecName: Full=Ribonuclease E; Short=RNase E Length = 935 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|304413612|ref|ZP_07395056.1| ribonuclease E [Candidatus Regiella insecticola LSR1] gi|304283703|gb|EFL92097.1| ribonuclease E [Candidatus Regiella insecticola LSR1] Length = 1017 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 190/554 (34%), Positives = 304/554 (54%), Gaps = 15/554 (2%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----DVKGGSPEDVPKKFK 165 D+ I + ++ A I E S+ +A D ++ Sbjct: 26 DLDIESTGHEQKKANIYKGKITRIEPSLEAAFVDYGADRHGFLPLKEISREYFSRDHYSN 85 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++V+ Q ++VQI KEERGNKGAA+TT++SLAG + VLMPN + ISR+I Sbjct: 86 TRPKIKDVLHEGQEVIVQIDKEERGNKGAALTTFISLAGCFLVLMPNNPRAGGISRRIEG 145 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK LE+P GMG+I+RTAG + +++ D + ++ W+ +++ A AP Sbjct: 146 EERTE-LKATLSTLELPDGMGLIVRTAGLGKNTKDLQWDLSFRLQHWEAIKKAAEGRPAP 204 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-PSYARIVRQYEDPHP 344 L+++E ++I RA RD +D+ EI++ K + A+ + L P + + ++ Y+ P Sbjct: 205 FLIHQESDVIVRAFRDYLRQDLGEILIDNPKTLKLAEKHITDLGRPDFIKKMKLYDGETP 264 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F IE Q++S Q EV LPS G ++++ TEAL +ID+NS R+T+ IE+TA TNL Sbjct: 265 LFSHYQIESQIESAFQREVRLPSGGSIVVDTTEALTAIDINSARATKGGDIEETARNTNL 324 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAAEEIARQLRLRDL GLIV+DFIDM ++ R VE++L+E++ +DRAR+Q+G IS FGL Sbjct: 325 EAAEEIARQLRLRDLGGLIVIDFIDMTPIRHQRDVEQRLREAVHQDRARIQIGRISRFGL 384 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 LEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE L+ + Sbjct: 385 LEMSRQRLNPSLGESSHHVCPRCTGTGSIRDNESLSLSILRLIEEEALKENTVKVHAIVP 444 Query: 525 SDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGSPVQALVNTGH---- 579 + YL+N+KR +I E R GV ++ + + + + + + Sbjct: 445 VPIASYLINEKRDSINAIENRTNGVRAIIIPTENMQTPNYAVSRIRKGEENTTISYMLAQ 504 Query: 580 KVGSDSQAPSYDKNIECVWQDEA---LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + + + A + E +++ LP+P++ S +I S + + K+R+ R Sbjct: 505 QYNAGTTAAQEETPNERKQREQPALSALPLPEASSSPEITAVKKSANTASMAPKQRQMRT 564 Query: 637 RRRPATDHHDAGVV 650 + ++ D + Sbjct: 565 KSVASSPFDDTSMN 578 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVNGQQLYDLDIESTGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 62 ADRHGFLPLKEISREYF 78 >gi|303252909|ref|ZP_07339067.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648235|gb|EFL78433.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 995 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 605 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + K R Sbjct: 606 KQTQAQDEQKAQRQERNQERNEAKKARRQ 634 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|24374321|ref|NP_718364.1| ribonuclease E [Shewanella oneidensis MR-1] gi|24348868|gb|AAN55808.1|AE015717_9 ribonuclease E [Shewanella oneidensis MR-1] Length = 1088 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 211/647 (32%), Positives = 313/647 (48%), Gaps = 21/647 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D + Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A AP L+++E N+I RAIRD +D+ EI++ + Y EAK + L+ Sbjct: 189 HHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERVKLYEAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI---------------ECVWQDEALLPIPKSESLED 614 + + +K +A Y+ ++ + P+ K E+ + Sbjct: 489 TDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQDVAPVAKVEAAKP 548 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + + T D+ + + + Sbjct: 549 GLFSKLFSAIGSFFSSSDNAATEKSAETKKSDSQATNANRRNRRNDTRRTRNNQDTEKAK 608 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + E + S + P K + Sbjct: 609 EGSREPRARNAKKVADAPQAQERPIREKDESAKRAKPEAKNRSQAPK 655 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|163803776|ref|ZP_02197631.1| ribonuclease E [Vibrio sp. AND4] gi|159172417|gb|EDP57288.1| ribonuclease E [Vibrio sp. AND4] Length = 1029 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 202/649 (31%), Positives = 317/649 (48%), Gaps = 24/649 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ + ++ AP L+++E N+I RAIRD +DI EI + Y AK+ +KL+ P Sbjct: 191 WSAIKGASDSNSAPFLIHQESNVIVRAIRDYLRRDIGEISIDSNTIYERAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVSRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERNQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK------SESLEDIQDNIVSEEST 625 + + + +A + E D I + + + S E Sbjct: 491 EEFDLLSYLLPQKLEAIKEAEGKEPAEVDIKPKRIEEPVLKGFAAPTQTAPAPSASSEPA 550 Query: 626 GVIRKRRRRRRRRRPATDHH------------DAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 +K+ + + V + + + + + Sbjct: 551 PTAKKKEAEPQEEKQGLFSRLFKALGSFLFGGSEEVKEEPKKDEQKPSRNNNRNKRDRND 610 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N + G + + N + P ++ R +R+ Sbjct: 611 RRRNNQRDNREGRDNRDNKRRRKPREEQATEQNEAQQPSKQQNRNQRRK 659 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 >gi|229521942|ref|ZP_04411359.1| ribonuclease E [Vibrio cholerae TM 11079-80] gi|229340867|gb|EEO05872.1| ribonuclease E [Vibrio cholerae TM 11079-80] Length = 1052 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 202/641 (31%), Positives = 320/641 (49%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL-------LPIPKSESLEDIQD 617 + + + D ++ +E + + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAETVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E + R + A+ + V + + E ++ N Sbjct: 551 LQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1] gi|300073995|gb|ADJ63394.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1] Length = 1062 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 203/629 (32%), Positives = 312/629 (49%), Gaps = 11/629 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + + I E S+ + + Sbjct: 12 EELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEERHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R I+E ++ Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN Sbjct: 72 EVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR++ ++ L+E L++P GM VI RTAG R E++ D YLM+LW Sbjct: 132 NPRGGGVSRRVEGEDRQE-LRETMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + ++ L+Y+E +L+ RAIRD + DI EI++ + + +A+ FM +MP Sbjct: 191 RAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDM 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALVS+DVNS R+TR Sbjct: 251 VHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE TA TNLEAA+E+ARQLRLRDL GLIV+DFIDME KN R VE +LK++L DRA Sbjct: 311 SDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKDALHHDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+E+SRQR+R S+ E + C C G G+IR S AL +LR ++E + Sbjct: 371 RVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + I V DV +LLN+KR I++ E R V++ ++ L + +E+ Sbjct: 431 KENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPHYKMERIKHDD 490 Query: 573 -ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 L + QA + + +D + + Q + E Sbjct: 491 PRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIVERKAPEPVAA 550 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 P T ++G++ + S + P + E +G + + Sbjct: 551 PV-----PPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGRGGDRN 605 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + + R + Sbjct: 606 GRNRNRNERGDRAERGERAERNGEQRNGR 634 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ ++ ++D E+ ++Q K NIY +TR+EPSL+A FV+YG Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A +KE+ + + G+ Sbjct: 62 EERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGN 110 >gi|145630414|ref|ZP_01786195.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021] gi|145638676|ref|ZP_01794285.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII] gi|144984149|gb|EDJ91586.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021] gi|145272271|gb|EDK12179.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII] gi|309750169|gb|ADO80153.1| Ribonuclease E [Haemophilus influenzae R2866] Length = 938 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 200/650 (30%), Positives = 319/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 611 ERNEEQVRNVRERNQRRPRRNLVEESITESAVNSTPVFEAKEERTEPVTQ 660 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|303250946|ref|ZP_07337135.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650163|gb|EFL80330.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 995 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 200/629 (31%), Positives = 313/629 (49%), Gaps = 13/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRVDRQER 605 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + K R Sbjct: 606 KQTQAQDEQKAQRQERNQERNEAKKARRQ 634 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|332288915|ref|YP_004419767.1| ribonuclease E [Gallibacterium anatis UMN179] gi|330431811|gb|AEC16870.1| ribonuclease E [Gallibacterium anatis UMN179] Length = 996 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 201/655 (30%), Positives = 320/655 (48%), Gaps = 30/655 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPEGYVYQGRPNIRDILQEGQEVIVQVSKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LEVP G+G+I+RTAG R+ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALSSLEVPDGVGLIVRTAGVGRSPEELQWDLHVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + + K+ +KL+ P Sbjct: 191 WEAIKQASESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSRKVFDKVKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHFQIESQIESAFQREVQLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPARHQREVENRMREAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ EST +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLNESTHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I + E R V I VV ++ F + + Sbjct: 431 LKEHTKQVHTIVPVKIATYLLNEKRKAITDIEKRHNVQIVVVPHEQMETPHFSVFRLRDG 490 Query: 572 Q------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + + + D + + + E Sbjct: 491 EDNHTLSYNLAKLHDIQEDADGEESLVNRAIDLSNSTTTNPTPEVAAVEITISEPAPLVK 550 Query: 620 VSEESTGVIRK-----------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 E ++ + + + ++ + + + D + Sbjct: 551 KEEVKASLLTRILKKLKAFFADNTQEEKEKQNRNRNGNKRPRRNDKENNRQKDRRNEERR 610 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N E V P S + + + + K+ + RR+ Sbjct: 611 TKDASNTSNKEELKRTKRANRKAVDEAPDSVSVAKKVDETKE-NSKEQQIASRRQ 664 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254520928|ref|ZP_05132983.1| ribonuclease G [Stenotrophomonas sp. SKA14] gi|219718519|gb|EED37044.1| ribonuclease G [Stenotrophomonas sp. SKA14] Length = 495 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 133/565 (23%), Positives = 236/565 (41%), Gaps = 73/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL ++ P + + D + + P + Sbjct: 60 VGLERAAFLHANDVVRP---APVA-------------------SADTENTTLPPPASVPI 97 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ + I G+ +Y + + Sbjct: 98 VELLRDGQDIVVQVVKDPIGT------------KGARLTTQISIPSRYMVLLPQSKVVGV 145 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + A+ T L I R + + E L Sbjct: 146 SARIEDETERARLKALVTE---------LSAQHGGYGYIVRTNAEGQPAEAIAEDIAYLS 196 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 V+ R + + I D +R ++ Sbjct: 197 RVWN--VVERRGREAASCSIIYEDLSLPLRSVRDLIRK---------------------- 232 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ ++ V ++ + + + F+ MP A + Y PIF G+E ++ Sbjct: 233 -----DVDKVKVDSKETFGQLQAFVAKYMPVLAEKLELYSGDRPIFDMFGVEDEIGRALD 287 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQLRLR+L Sbjct: 288 KQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLG 347 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R S+ Sbjct: 348 GIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYDFSPLGLVEMTRKRTVESLERQL 407 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C C G G I++ +V I R + + Q+ A ++V + VV + +++ + + Sbjct: 408 SETCPQCSGRGSIKTTETVTYEIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVA 467 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G SI + + F + Sbjct: 468 ELEEFLGKSIRFQADEQYLQEQFDV 492 >gi|194366672|ref|YP_002029282.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3] gi|194349476|gb|ACF52599.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3] Length = 495 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 133/565 (23%), Positives = 237/565 (41%), Gaps = 73/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL ++ P + + D + + P+ + Sbjct: 60 VGLERAAFLHANDVVRP---APVA-------------------SADTENTTLPPPSSVPI 97 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ + I G+ +Y + + Sbjct: 98 VELLRDGQDIVVQVVKDPIGT------------KGARLTTQISIPSRYMVLLPQSKVVGV 145 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + A+ T L I R + + E L Sbjct: 146 SARIEDEGERARLKALVTE---------LSAQHGGYGYIVRTNAEGQPAEAIAEDVAYLS 196 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 V+ R + + I D +R ++ Sbjct: 197 RVWN--VVERRGREAASCSNIYEDLSLPLRSVRDLIRK---------------------- 232 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ ++ V ++ + + + F+ MP A + Y PIF G+E ++ Sbjct: 233 -----DVDKVKVDSKETFAQLQAFVAKYMPVLAEKIELYSGDRPIFDMFGVEDEIGRALD 287 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQLRLR+L Sbjct: 288 KQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLG 347 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R S+ Sbjct: 348 GIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYDFSPLGLVEMTRKRTVESLERQL 407 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C C G G I++ +V I R + + Q+ A ++V + VV + +++ + + Sbjct: 408 SETCPQCSGRGTIKTTETVTYEIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVA 467 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G SI + + F + Sbjct: 468 ELEEFLGKSIRFQADEQYLQEQFDV 492 >gi|77166294|ref|YP_344819.1| ribonuclease E and G [Nitrosococcus oceani ATCC 19707] gi|76884608|gb|ABA59289.1| RNAse E [Nitrosococcus oceani ATCC 19707] Length = 764 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 216/646 (33%), Positives = 322/646 (49%), Gaps = 31/646 (4%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149 A+ A+ D D+ I N ++ A I E S+ + D ++ + Sbjct: 11 AEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYGADRQGFLPL 70 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ++V + + + +Q+V+K Q L+VQ+ KEERGNKGAA++T++SLAGRY VL Sbjct: 71 KEVTRSYFQSHQGESGDRPKVQDVLKEGQELVVQVEKEERGNKGAALSTFISLAGRYLVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + +SR+I L E R LE+P GMG+I RTA + E++ D YL+ Sbjct: 131 MPNNPRAGGVSRRIEGEERS-MLLEAMRTLEIPEGMGLITRTAAVGKNAEELQWDLNYLL 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 LW +++ A AP L+Y+E ++I RA+RD DI EI++ Y+ A DFM+ +M Sbjct: 190 HLWHSIQAAAEGRPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQRAYDFMRQVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P R ++ Y+D +F R IE Q+++ Q EV LPS G ++++ TEAL +ID+NS R+ Sbjct: 250 PPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALTTIDINSARA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + IE+TAL TNLEAAEEIARQLRLRDL GLIV+DFIDM +N R+VE +L+E L++ Sbjct: 310 NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E+ VC C G G +R S+ LS+LR +EE Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLGLSVLRLIEE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + +++ V +LLN+KRA + E R+G + +V L +F IE+ Sbjct: 430 GAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFLVPNSHLETPVFEIERIK 489 Query: 570 PVQALV---------------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 V N PS + V L P P+ + + Sbjct: 490 DVGKGESRVDKRFEMQSYQMANEPSPKKPALLTPSAIPDEPLVKAGSPLFPKPEPQPVAP 549 Query: 615 IQDNIVSEE--------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + + + + + + G + Sbjct: 550 KAEPDFLRRFWTAFMKGDQELDVAEVVTQETEVVSEETGERGRLPPRRGRSQGRGRRGSG 609 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES-SNSSSDP 711 +G E+ + T +M++ + SSS P Sbjct: 610 RQHNRKENTQGNEGSGVSSGAESGQAASEAKETQDMQNGTESSSAP 655 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ +++LD E+ ++Q K NIY K+TR+EPSL A FVDYG Sbjct: 2 KRMLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +R GFLP E+ Y+Q Sbjct: 62 ADRQGFLPLKEVTRSYFQ 79 >gi|229844425|ref|ZP_04464565.1| ribonuclease E [Haemophilus influenzae 6P18H1] gi|229812674|gb|EEP48363.1| ribonuclease E [Haemophilus influenzae 6P18H1] Length = 938 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 200/650 (30%), Positives = 319/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 611 ERNEEQVRNVRERNQRRPRRNLVEESITESAVNSTPVFEAKEERTEPVTQ 660 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|145632660|ref|ZP_01788394.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655] gi|145636318|ref|ZP_01791987.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH] gi|144986855|gb|EDJ93407.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655] gi|145270483|gb|EDK10417.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH] Length = 938 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 199/650 (30%), Positives = 317/650 (48%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + + P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLVSRNVETTVVTEQPAVESAVVALSISEAAPTPVER 550 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 551 KSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 611 ERNEEQVRNVRERNQRRPRRNLVEESITESAVNSTPVFEAKEERTEPVTQ 660 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|323495018|ref|ZP_08100107.1| ribonuclease E [Vibrio brasiliensis LMG 20546] gi|323310675|gb|EGA63850.1| ribonuclease E [Vibrio brasiliensis LMG 20546] Length = 980 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 199/632 (31%), Positives = 315/632 (49%), Gaps = 7/632 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + + AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WGAIKQASDANAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +L++S++ DR Sbjct: 311 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQDVKITVVPNSDMETPHFDVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +A + E V + I + + + + K Sbjct: 491 EEFDLLSYLLPKKIEALKEAEGKEPVETEVKPKKIEEPALKGFAAPTQSAP-APSPVAKA 549 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 ++ R + V ++ + + S + + + E + Sbjct: 550 PEKKVERAEQQESQPGLVSRFFKALGSFLFGSSEQEEKKEEQQPKERKEGNRNNRNRRNR 609 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + N K+ K Sbjct: 610 NDNRRRNNRDNRNENREDKRDNKRKNTRDEAK 641 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 >gi|190150765|ref|YP_001969290.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915896|gb|ACE62148.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 995 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 199/625 (31%), Positives = 312/625 (49%), Gaps = 13/625 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 371 ARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + L + + + N V ++ + ++E + + Sbjct: 491 EVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSSELNLQPAPTP 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + P+ V + + ++ + E Sbjct: 551 VEPAK-----PSLLSRLIAKVKSFFAPEEKAEEKPKPKARNQRDRRNRRERPNRADRQER 605 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714 + + N + K Sbjct: 606 KQTQAQDEQKAQRQERNQERNEAKK 630 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|269302751|gb|ACZ32851.1| ribonuclease, Rne/Rng family [Chlamydophila pneumoniae LPCoLN] Length = 515 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 289/566 (51%), Gaps = 65/566 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N++L++ +E R L++ ++ +L E + +Q+KGNIY +VT + ++Q+AF++ Sbjct: 1 MENEILLNI-ESKEIRYAHLKNGQLFDLIIERKKVRQLKGNIYRGRVTNILRNIQSAFIN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +GF+ +I + K + D +A+ ++ + + + + Sbjct: 60 IDERENGFIHISDI-----------LENSKKFEQMFDMDVDALPEEASEAPLLSSEEAPI 108 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE +K + Sbjct: 109 EE--------------------------------------------------FLKLDSPV 118 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G+KGA +T+ +S+ GRY VL+PN+ +SRKI +P R+ LK++ R E Sbjct: 119 LVQVVKEPIGSKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMREQLKQLIRSFE 177 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA + + + + L+ W + E ++ P L+Y E +++K+A+ Sbjct: 178 MPQDMGLICRTASTTASTEALINEAHDLLLTWKTILEKFYSTEQPCLLYSETDILKKAVI 237 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K+ +++ Y++ K +K P + + Y D P+F R IE ++D + Sbjct: 238 TCIDKNYKRLLIDDYATYQKCKHMLKKYSPDASIKIEYYRDSIPMFERFNIEKEIDKATR 297 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 298 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 357 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 358 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 417 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL-NQKRAT 538 +C YC G I++ SV + I R +++ + ++ + H ++ Y+ Sbjct: 418 LFTLCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHSHLCLVVHPEIASYMKQENDDNE 477 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 478 MINLAKQLKAKLQINTSDSVHLNHYQ 503 >gi|114047967|ref|YP_738517.1| RNAse E [Shewanella sp. MR-7] gi|113889409|gb|ABI43460.1| RNAse E [Shewanella sp. MR-7] Length = 1095 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 212/649 (32%), Positives = 314/649 (48%), Gaps = 21/649 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D + Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A + AP L+++E N+I RAIRD +D+ EI++ + Y EAK + L+ Sbjct: 189 HHWAAITEAAQSRNAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + +K +A Y+ E L + + V+ + Sbjct: 489 TDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQAAAPVANKVEATE 548 Query: 629 R--------------KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + ++ + D + +D Sbjct: 549 PGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTRNNQDADKA 608 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + D + N+ K+R ++ Sbjct: 609 KEGTREPRTRNAKKAADAPQAQERPAREKDENAKRTKPEPKSRNQAPKE 657 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|307822684|ref|ZP_07652915.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96] gi|307736288|gb|EFO07134.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96] Length = 819 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 213/650 (32%), Positives = 323/650 (49%), Gaps = 17/650 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+ + D E + + ++ +E A + E+ + Sbjct: 11 PEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIVTHVEPSLEAAFVNYGAEKHGFLPF 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +G + R+ I+++IK Q ++VQI KEERGNKGAA+TTY+S Sbjct: 71 KEISPLYRHLQEGVEND------GRRPAIKDLIKEGQEIVVQIEKEERGNKGAALTTYIS 124 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAG Y VLMPN K ISR+I R +L+E+ LE+P MG+I+RTAG + E+ Sbjct: 125 LAGTYLVLMPNNPKAGGISRRIEG-ETRSDLREVMAALEIPESMGLIVRTAGCGKNVEEL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D YL++LW+ + + AP LV++E N+I RA+RD +I EI++ E ++ Sbjct: 184 QWDLNYLLQLWEAIERSSSEQSAPFLVFQESNVIIRALRDHLRGNIDEILIDNEDAFKLV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 ++F+K +MP + + Y+D P+F R IE Q++ + EV+LPS G ++I+ TEAL S Sbjct: 244 QNFLKQVMPHFLPKAKLYQDAVPLFNRYQIESQIEVAYGREVSLPSGGSIVIDHTEALTS 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NS R+T+ IE+TAL TNLEAA+EIARQLRLRDL GL V+DFIDM KN ++VE Sbjct: 304 IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQKTVEN 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+++LK DRAR+Q IS FGLLEMSRQR+R S+ +ST C CKG G IR+ SVAL Sbjct: 364 HLRDALKIDRARIQTSRISRFGLLEMSRQRMRPSLGDSTQLPCPRCKGQGTIRNVESVAL 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S+LR +EE ++ +I H + +LLN+KR+ I + E R V I ++ L Sbjct: 424 SVLRILEEEAMKKGTEKVIAHLPIECATFLLNEKRSAIEQIENRLKVGIVILPSKHLETP 483 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + IE+ ++ + ++ + + + + A I + + Sbjct: 484 AYDIERIKEKESGDGKASYLQIKAEDITIPEFAQQIKPSTAKAAIKEFLHDSPAPVQSKN 543 Query: 622 EEST----------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E ++ G + + V + +N D + Sbjct: 544 ESASLIQRFWHKLVGPSASTEPKAKVTAAVQTTERIKPVDEGQPRKNRGDRQGQGQTQDR 603 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 G H E S + N + + R R Sbjct: 604 GRGRGRGQGRGQHPSQEQAQASEQVQAPKPKPEQNPDAPRPNRPPRGQGR 653 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 51/76 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ + D E K+Q K NIY VT VEPSL+AAFV+YG Sbjct: 2 KRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIVTHVEPSLEAAFVNYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 +HGFLPF EI P Y Sbjct: 62 AEKHGFLPFKEISPLY 77 >gi|331657146|ref|ZP_08358108.1| ribonuclease E (RNase E) [Escherichia coli TA206] gi|331055394|gb|EGI27403.1| ribonuclease E (RNase E) [Escherichia coli TA206] Length = 1058 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 488 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 548 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 607 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|167570711|ref|ZP_02363585.1| ribonuclease E [Burkholderia oklahomensis C6786] Length = 711 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 194/531 (36%), Positives = 295/531 (55%), Gaps = 7/531 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + I E S+ + + + Sbjct: 9 EELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGEDRHGFLPFK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++LW Sbjct: 129 NPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLW 187 Query: 273 DNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + + P L+Y E +L+ RAIRD + DI EI++ + Y +A+ FM ++MP Sbjct: 188 RAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+T Sbjct: 248 DNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK D Sbjct: 308 KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 368 RARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 428 AMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLRH 487 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 A ++ ++ + + E + A P+ E+ Sbjct: 488 DDARLDDPRASWKMAEEAARELEAETGYSKRAEEAKPRQEAAVKGITPERP 538 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|77360756|ref|YP_340331.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides via the formation of NDPs [Pseudoalteromonas haloplanktis TAC125] gi|76875667|emb|CAI86888.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides via the formation of NDPs [Pseudoalteromonas haloplanktis TAC125] Length = 1071 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 186/552 (33%), Positives = 291/552 (52%), Gaps = 7/552 (1%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 F + I++VIK Q ++VQ+ KEERG KGAA+TT++S+AG Y VLMPN + ISR Sbjct: 82 YTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISR 141 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 +I + LKE LE+P GMG+I+RTAG ++ E+ D + L+ W+ + A + Sbjct: 142 RIEGDERTE-LKESLSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIGVAADS 200 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + AP L+++E N+I RAIRD +DI EI++ + + EAK ++ P + V+ Y+ Sbjct: 201 AKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQG 260 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS ++T+ IE+TAL Sbjct: 261 DTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATKGGDIEETALN 320 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +LK++++ DRARVQ+G IS Sbjct: 321 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRPDRARVQIGKISR 380 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGLLEMSRQR+R S+ E++ C C G G IRS S+ALSILR +EE ++ + Sbjct: 381 FGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIALSILRLIEEEAIKDNTAQVNA 440 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 V YLLN++R ++ E + I ++ + + + + + + + Sbjct: 441 QVPVAVAAYLLNEQRRSVHRMEKQHKCDIVIIPNQHMETPHYEVMRLRKDETIETVSYGQ 500 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + +++ + + P+ + L+ + + + Sbjct: 501 IVAPEPEAFEMS------KSPVAPVREEPMLKGVVMPAAPAPQAAPANVVAPAETKAQSG 554 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + + + V + + + ++ + N P S P Sbjct: 555 LLDAIGKWFKSLFASETVEVKKEETQKQQQETRDNTRNNDNRRRNNNNQRRRNNPRSKPR 614 Query: 702 MESSNSSSDPIV 713 E + Sbjct: 615 TERTADEEVKTN 626 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFV+YG Sbjct: 2 KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI Y+ Sbjct: 62 ADRHGFLPLKEIARTYF 78 >gi|194366451|ref|YP_002029061.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3] gi|194349255|gb|ACF52378.1| ribonuclease, Rne/Rng family [Stenotrophomonas maltophilia R551-3] Length = 1091 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 200/501 (39%), Positives = 289/501 (57%), Gaps = 5/501 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D + D+ I ++ + I E S+ +A + Sbjct: 10 QAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYGGGRHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I LK+ L +P MGVI+RTAG R E++ D +YL+ Sbjct: 130 PNSPSAGGVSRRIEGEDRA-ALKDALDKLNIPDDMGVIIRTAGVGRDAEELQWDLDYLLN 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W + E AL+ AP L+Y+E LI RA+RD DI EI+V E+ Y AK+FM+ +MP Sbjct: 189 VWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAKEFMQQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y+D P+F R IE Q++ ++ V LPS G ++++QTEAL ++DVNS R+T Sbjct: 249 QTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVNSSRAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IEDTA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R VE +L +LK D Sbjct: 309 KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENRLANALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQVG IS FGLLEMSRQR+R S+ ES+ VC C G G +RS S++LSI+R EE+ Sbjct: 369 RARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ YLLN+KR+ + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPHYAVTRLRD 488 Query: 571 VQALVNTGHKVGSDSQAPSYD 591 + +G Sbjct: 489 NELGEESGRPSYQRGTPRKLP 509 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++ R+EPSL+AAFV+YG Sbjct: 2 KRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 G RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 GGRHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGN 110 >gi|113970740|ref|YP_734533.1| RNAse E [Shewanella sp. MR-4] gi|113885424|gb|ABI39476.1| RNAse E [Shewanella sp. MR-4] Length = 1093 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 211/649 (32%), Positives = 315/649 (48%), Gaps = 21/649 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D + Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 189 HHWAAITEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + +K +A Y+ E L + + V+ + Sbjct: 489 TDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQAAAPVANKVEATE 548 Query: 629 R--------------KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + ++ + D + +D Sbjct: 549 PGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTRNNQDADKA 608 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E ++ D + N+ K+R ++ Sbjct: 609 KEGTREPRTRNAKKSADAPQAQERPAREKDENAKRTKPEPKSRNQAPKE 657 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|312962574|ref|ZP_07777064.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6] gi|311283154|gb|EFQ61745.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6] Length = 1058 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 217/604 (35%), Positives = 315/604 (52%), Gaps = 4/604 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 28 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 88 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 266 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E L+ DRAR Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 386 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 387 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 506 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 ++G + A + + ++ L+ + + N Sbjct: 507 EAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPMPVEPAAPVAAPA 566 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + V + + + N N Sbjct: 567 ALPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGRQQSRNRNGRRD 626 Query: 694 IPPV 697 Sbjct: 627 EERK 630 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 18 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 78 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122 >gi|309972428|gb|ADO95629.1| Ribonuclease E [Haemophilus influenzae R2846] Length = 935 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 191/591 (32%), Positives = 312/591 (52%), Gaps = 17/591 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V MP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + A + V ++ + + ++E + E+ +R Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLVSRNVETTVVTEQPAVESAVVALSISEAAPTPVER 550 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + ++ +++ + + + + +P + Sbjct: 551 K-----------SNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRN 590 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|152979495|ref|YP_001345124.1| ribonuclease [Actinobacillus succinogenes 130Z] gi|150841218|gb|ABR75189.1| ribonuclease, Rne/Rng family [Actinobacillus succinogenes 130Z] Length = 962 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 195/548 (35%), Positives = 304/548 (55%), Gaps = 8/548 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQHLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I++VIK Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPADYVYNGRPNIKDVIKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERIE-LKEALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++++ N AP L+++E ++I RAIRD +DI EI+V K Y +AK +KL+ P Sbjct: 191 WEAIKQVSENRPAPFLIHQESDVIVRAIRDYLRRDIGEILVDSPKIYEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + ++ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL++ID+NS RSTR Sbjct: 251 FINRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALIAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++E++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES++ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSSHICPRCQGTGKVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENSKQVQCIVPVQIASYLLNEKRKAIRSIEKRHNVDIVVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + Q + + ++ + E ++ E+ VI Sbjct: 491 EEANVLSYHLPKLHEVQEDVFVAEESLISRNIETAAVTAENMAESAVLSMTIPEAAPVIE 550 Query: 630 KRRRRRRR 637 ++ Sbjct: 551 AKKEAESS 558 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD ES +Q K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQHLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|190575341|ref|YP_001973186.1| putative ribonuclease G [Stenotrophomonas maltophilia K279a] gi|190013263|emb|CAQ46897.1| putative ribonuclease G [Stenotrophomonas maltophilia K279a] Length = 495 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 133/565 (23%), Positives = 236/565 (41%), Gaps = 73/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL ++ P + + D + + P + Sbjct: 60 VGLERAAFLHANDVVRP---APVA-------------------SADTENTTLPPPASVPI 97 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ + I G+ +Y + + Sbjct: 98 VELLRDGQDIVVQVVKDPIGT------------KGARLTTQISIPSRYMVLLPQSKVVGV 145 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + A+ T L I R + + E L Sbjct: 146 SARIEDEAERARLKALVTE---------LSAQHGGYGYIVRTNAEGQPAEAIAEDIAYLS 196 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 V+ R + + I D +R ++ Sbjct: 197 RVWN--VVERRGREAASCSNIYEDLSLPLRSVRDLIRK---------------------- 232 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ ++ V ++ + + + F+ MP A + Y PIF G+E ++ Sbjct: 233 -----DVDKVKVDSKETFAQLQAFVAKYMPVLAEKLELYSGDRPIFDMFGVEDEIGRALD 287 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQLRLR+L Sbjct: 288 KQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLG 347 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R S+ Sbjct: 348 GIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYDFSPLGLVEMTRKRTVESLERQL 407 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 ++ C C G G I++ +V I R + + Q+ A ++V + VV + +++ + + Sbjct: 408 SETCPQCSGRGSIKTTETVTYEIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVA 467 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G SI + + F + Sbjct: 468 ELEEFLGKSIRFQADEQYLQEQFDV 492 >gi|283784874|ref|YP_003364739.1| ribonuclease E [Citrobacter rodentium ICC168] gi|282948328|emb|CBG87913.1| ribonuclease E [Citrobacter rodentium ICC168] Length = 1076 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 200/670 (29%), Positives = 318/670 (47%), Gaps = 54/670 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI------------- 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPEPAEPVVKA 550 Query: 616 --------------------------------QDNIVSEESTGVIRKRRRRRRRRRPATD 643 ++ +E+ ++ R++ RR + Sbjct: 551 AAPKAAAAPAAPAEPGLLSRLFGALKSLFSGGEEAKPAEQPAPKAAEKPERQQDRRKRQN 610 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 + + S + D+ E + + N + + D E Sbjct: 611 NRRDRNDRNERSERRDSRDNRSERAESGESRDENRRNRRQAQQSADRDNRQQTAEVAEKA 670 Query: 704 SSNSSSDPIV 713 S P Sbjct: 671 KSGDEQQPQP 680 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 1/147 (0%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + ++ P ++ + S + SE + + Sbjct: 582 GEEAKPAEQPAPKAAEKPERQQDRRKRQNNRRDRNDRNERSERRDSRDNRSERAESGESR 641 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 RR RR+ D + + + +P N E E Sbjct: 642 DENRRNRRQAQ-QSADRDNRQQTAEVAEKAKSGDEQQPQPRRERNRRRSEEKRQAQQEVK 700 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTR 717 +SI T + E ++ + Sbjct: 701 ALSIDEQQTQDTEQEERVRPAQPRRKQ 727 >gi|227357741|ref|ZP_03842090.1| ribonuclease E [Proteus mirabilis ATCC 29906] gi|227162070|gb|EEI47084.1| ribonuclease E [Proteus mirabilis ATCC 29906] Length = 1173 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 198/592 (33%), Positives = 306/592 (51%), Gaps = 15/592 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ +++D Y +R Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLDIPDGMGLIVRTAGVGKSAEALQQDLSYRLRH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330 WD +++ A + AP L+++E N+I RA RD DI EI++ K A+ ++ + Sbjct: 191 WDAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMARSHIEAIGRG 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A +R Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LS+LR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + + E R V + +V ++ F + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQANVKVVIVPNDQMQTPHFSVIRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + + ++ +P K+ I + + S Sbjct: 491 KGEEISSLSYNL-------AQYHETQLNEAEDEAVPERKAPEQPAISAFALQDNSADTTN 543 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 K++ + S+I + F EP + Sbjct: 544 KKKSAPTPAKQVKKSETTESGGFFSAIAKFFSNLFASQPEPVVEEKPQESKK 595 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|188534162|ref|YP_001907959.1| ribonuclease E [Erwinia tasmaniensis Et1/99] gi|188029204|emb|CAO97076.1| Ribonuclease E [Erwinia tasmaniensis Et1/99] Length = 1136 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 199/636 (31%), Positives = 313/636 (49%), Gaps = 13/636 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSNYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLELPDGMGLIVRTAGVGKSAEALQWDLGFRIKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + E + P + + + Sbjct: 491 SGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPEAPPAPQEAAPEKTA 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K + + A + +VS + + + S + +P + + + E Sbjct: 551 PKAVVKSQAPAAAQPGLISRLVSGLKKLFAAPEKSAE---QPEQLVVEEKIAASSAPRGE 607 Query: 689 NYDVSIPPVSTPEM-ESSNSSSDPIVKKTRWWKRRK 723 + E + ++D + R R + Sbjct: 608 RRNNRRQNNRRDRNGERTERNADRGERNDRNADRNE 643 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|291617028|ref|YP_003519770.1| Rne [Pantoea ananatis LMG 20103] gi|291152058|gb|ADD76642.1| Rne [Pantoea ananatis LMG 20103] Length = 1097 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 188/518 (36%), Positives = 281/518 (54%), Gaps = 9/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPDGMGLIVRTAGVGKSAESLQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAADSRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR + E R GV +V + + + + Sbjct: 431 ALKDNTKEVHAIVPVPVASYLLNEKREAVNAIEKRQGGVRAVIVPDDRMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606 + + + + E + P Sbjct: 491 KGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPA 528 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|322513325|ref|ZP_08066445.1| ribonuclease E [Actinobacillus ureae ATCC 25976] gi|322120879|gb|EFX92733.1| ribonuclease E [Actinobacillus ureae ATCC 25976] Length = 992 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 205/659 (31%), Positives = 325/659 (49%), Gaps = 33/659 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + VR YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q G IS FGLLEMSRQR+ S+ E+++ VC C+G G +R S+ALSILR +EE Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIALSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 431 IKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGS--DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--------- 620 + L + + ++ N V ++ + ++E + + Sbjct: 491 EVLPTLSYDLAKHYHAREDDVQPNTHTVSEEALVTRNEPVITVESVLQSSELNLQLAPTP 550 Query: 621 ----------------SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R + + + Q Sbjct: 551 AAPAKPSLLSRLIAKVKSLFAAEEKVEEKPKPKARNQRERRNRRERPNRGERQERKQQQQ 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 D N E+ +V+ P + E + + ++ + RK Sbjct: 611 DEQKAQRQERNQERAESKKARRQVVEEVAGAPETQTEQAQRPQRENQVAERRQRRDLRK 669 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|254283338|ref|ZP_04958306.1| ribonuclease E [gamma proteobacterium NOR51-B] gi|219679541|gb|EED35890.1| ribonuclease E [gamma proteobacterium NOR51-B] Length = 946 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 193/572 (33%), Positives = 304/572 (53%), Gaps = 9/572 (1%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ + + I++V+K LLVQ+ KEERG+KGAA+T+++SLAGRY VL Sbjct: 71 KEIAHQYYRTNAPSGEGRVKIRDVLKEGTELLVQVDKEERGSKGAALTSFISLAGRYMVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN K ISR+I + L++ L +P GMGVI+RTAG R+ E++ D +YL+ Sbjct: 131 MPNNPKAGGISRRIEGDDRSE-LRDALAELNIPDGMGVIIRTAGVGRSSEELQWDLDYLL 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 +LWD + A ++ +P L+Y+E ++I R+IRD D+ ++++ Y++A DF+ ++M Sbjct: 190 QLWDAIETAANDNKSPVLLYQESDVIIRSIRDYLRDDVDQVLIDDPVAYKQASDFVSMVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P Y++ ++ YEDP P+F R +E Q+++ EV LPS G ++I+ TEALVSID+NS R+ Sbjct: 250 PKYSQRIKFYEDPIPLFNRFQVEGQIETAFSREVRLPSGGSIVIDPTEALVSIDINSARA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE TAL TNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE +++++L+ Sbjct: 310 TKGSDIEQTALNTNLEAAEEIARQLRLRDMGGLIVIDFIDMNASKNQRAVENRIRDALEI 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S+ L+ILR + E Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGETSGMVCPRCTGQGTIRDTKSLGLAILRLMLE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + DV +LLN+KRA + + EA+ V + ++ + F + + Sbjct: 430 EATKEKTAEVRAIVPVDVAAFLLNEKRAAVNDIEAQSSVRLLIIPNPHMETPHFELVRLR 489 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + H + + P ++ A+ P + Q Sbjct: 490 EDEVEEEETHSFDVEIETP-PPMAVQEEENTAAIAPQALVRGVTPSQPAPAQVAPAVAEA 548 Query: 630 KRRRRRRRRRPATDHHD-------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 A + + + + ++ + + ++ N ++ Sbjct: 549 PAAPVAAPTPAAAPSKPGLVSKFLSTLFAPAPAPEDTSSATEEEAASTTERENTESSDDQ 608 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + S+S + Sbjct: 609 GRSRDGQRRSRGGRNRRRGGKRSDSEQASESQ 640 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 2/110 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KMLI+A+ EE RV ++ R+ +LD E+ + K N+Y AKVTRVEPSL+AAFVD+G Sbjct: 2 KKMLINATQAEEVRVALVDGQRLYDLDIENRSRVATKANVYKAKVTRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQI--PFSDRQALLKESNIAQTDSEAVADDVTHG 110 +RHGFLP EI YY+ P + + +++ T+ D G Sbjct: 62 ADRHGFLPLKEIAHQYYRTNAPSGEGRVKIRDVLKEGTELLVQVDKEERG 111 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 16/158 (10%), Positives = 42/158 (26%), Gaps = 1/158 (0%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQD 617 +E + + + A + V + E E + + Sbjct: 764 ESADATVEPTQAAEVDADKPSTEPVPAAASESENETAEVESSATVADQQPQEAPAETVAE 823 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 V+ + + ++ P + + +S + + + Sbjct: 824 EPVAAPEAAEEQPKPVAKKTAVPTPQPAPSEADAAPASRAGLTEKGRAINDPRVAPKPVA 883 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + PPVS + +S+DP +K+ Sbjct: 884 EVSVETAHTSLFAAPEAPPVSVISQDVPRASNDPRLKR 921 >gi|197284737|ref|YP_002150609.1| ribonuclease E [Proteus mirabilis HI4320] gi|194682224|emb|CAR41936.1| ribonuclease E [Proteus mirabilis HI4320] Length = 1173 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 198/592 (33%), Positives = 306/592 (51%), Gaps = 15/592 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ +++D Y +R Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLDIPDGMGLIVRTAGVGKSAEALQQDLSYRLRH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330 WD +++ A + AP L+++E N+I RA RD DI EI++ K A+ ++ + Sbjct: 191 WDAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMARSHIEAIGRG 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A +R Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LS+LR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + + E R V + +V ++ F + + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQANVKVVIVPNDQMQTPHFSVIRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + + ++ +P K+ I + + S Sbjct: 491 KGEEISSLSYNL-------AQYHETQLNEAEDEAVPERKAPEQPAISAFALQDNSADTTN 543 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 K++ + S+I + F EP + Sbjct: 544 KKKSAPTPAKQVKKSETTESGGFFSAIAKFFSNLFASQPEPVVEEKPQESKK 595 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|15618866|ref|NP_225152.1| axial filament protein [Chlamydophila pneumoniae CWL029] gi|16752073|ref|NP_445439.1| ribonuclease G [Chlamydophila pneumoniae AR39] gi|33242327|ref|NP_877268.1| cytosolic axial filament protein cafA and ribonuclease E [Chlamydophila pneumoniae TW-183] gi|4377282|gb|AAD19095.1| Axial Filament Protein [Chlamydophila pneumoniae CWL029] gi|7189814|gb|AAF38687.1| ribonuclease G [Chlamydophila pneumoniae AR39] gi|33236838|gb|AAP98925.1| cytosolic axial filament protein cafA and ribonuclease E [Chlamydophila pneumoniae TW-183] Length = 515 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 289/566 (51%), Gaps = 65/566 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N++L++ +E R L++ ++ +L E + +Q+KGNIY +VT + ++Q+AF++ Sbjct: 1 MENEILLNI-ESKEIRYAHLKNGQLFDLTIERKKVRQLKGNIYRGRVTNILRNIQSAFIN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +GF+ +I + K + D +A+ ++ + + + + Sbjct: 60 IDERENGFIHISDI-----------LENSKKFEQMFDMDVDALPEEASEAPLLSSEEAPI 108 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE +K + Sbjct: 109 EE--------------------------------------------------FLKLDSPV 118 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G+KGA +T+ +S+ GRY VL+PN+ +SRKI +P R+ LK++ R E Sbjct: 119 LVQVVKEPIGSKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMREQLKQLIRSFE 177 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA + + + + L+ W + E ++ P L+Y E +++K+A+ Sbjct: 178 MPQDMGLICRTASTTASTEALINEAHDLLLTWKTILEKFYSTEQPCLLYSETDILKKAVI 237 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K+ +++ Y++ K +K P + + Y D P+F R IE ++D + Sbjct: 238 TCIDKNYKRLLIDDYATYQKCKHMLKKYSPDASIKIEYYRDSIPMFERFNIEKEIDKATR 297 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 298 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 357 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 358 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 417 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL-NQKRAT 538 +C YC G I++ SV + I R +++ + ++ + H ++ Y+ Sbjct: 418 LFTLCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHSHLCLVVHPEIASYMKQENDDNE 477 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 478 MINLAKQLKAKLQINTSDSVHLNHYQ 503 >gi|157370140|ref|YP_001478129.1| ribonuclease E [Serratia proteamaculans 568] gi|157321904|gb|ABV41001.1| ribonuclease, Rne/Rng family [Serratia proteamaculans 568] Length = 1122 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 195/635 (30%), Positives = 300/635 (47%), Gaps = 10/635 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A AP L+++E N+I RA RD DI EI++ K AK+ + L P Sbjct: 191 WEAIKKAAEGRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S+ALSILR +EE Sbjct: 371 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLALSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + V YLLN+KR ++ E R GV +V ++ + + + Sbjct: 431 ALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKS-ESLEDIQDNIVSEESTGV 627 + + + + + + + P S D Sbjct: 491 KGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPPPAEEPVVAQA 550 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++ A G + ++ + +P + Sbjct: 551 TVAATATKQTAPAAAKPGLLGRLFGGLKALFAGEEQPVVEAKPVVEAPKSEGNGENRRQD 610 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + K R Sbjct: 611 RRGQRRQGTGRKDRGERGERGERGDRPERGERKER 645 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|307627446|gb|ADN71750.1| ribonuclease E [Escherichia coli UM146] Length = 1058 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 488 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 548 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 607 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|386559|gb|AAB27352.1| Ams=cell shape determining protein homolog {N-terminal} [Escherichia coli, Peptide, 489 aa] Length = 489 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 277/479 (57%), Gaps = 8/479 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVVRV 489 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|158425251|ref|YP_001526543.1| ribonuclease E and G [Azorhizobium caulinodans ORS 571] gi|158332140|dbj|BAF89625.1| ribonuclease E and G [Azorhizobium caulinodans ORS 571] Length = 1093 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 295/565 (52%), Positives = 373/565 (66%), Gaps = 1/565 (0%) Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 P+ + + E+ +D PE P++ R Y IQEVI+ RQ++LVQ Sbjct: 334 KPVEDETDGESEDGEEEDEGVEQMGSDDALEEVPERAPQRRARTYKIQEVIRRRQVMLVQ 393 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITN VDRK LKE+ + LEVP Sbjct: 394 VVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDRKRLKEVVQELEVPE 453 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 GMG+ILRTAGA+RTK+EIKRDFEYL+RLW+ VREL L S AP+LVYEEG+LIKRAIRDLY Sbjct: 454 GMGIILRTAGANRTKVEIKRDFEYLLRLWETVRELTLTSSAPNLVYEEGSLIKRAIRDLY 513 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 K+I EI V+GE+G++EA+DFM++LMPS+A+ V Y +P PIF + G+E QLD++ V Sbjct: 514 SKEIDEIHVAGEEGFQEARDFMRMLMPSHAKNVIAYREPQPIFAKYGVEHQLDAMFSPVV 573 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY++IN TEALVSIDVNSGR+TREH IEDTAL+TN+EAAEEIARQLRLRDLAGLI Sbjct: 574 QLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNMEAAEEIARQLRLRDLAGLI 633 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDMEEK+NNRSVE+KLK+ LK DRAR+QVG IS+FGL+EMSRQRIR+ VLES+ +V Sbjct: 634 VIDFIDMEEKRNNRSVERKLKDCLKNDRARIQVGRISHFGLMEMSRQRIRTGVLESSIEV 693 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G++RS +SVAL +LR++EE LL+ +HN+I T +V LY+LN KRA + E E Sbjct: 694 CPVCGGTGHVRSAASVALQLLRALEEQLLRSASHNLIARTRGEVALYVLNHKRAHLRELE 753 Query: 544 ARFGVSINVVIGIEL-ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 RF V++ V + + F IEKG + ++E Sbjct: 754 DRFSVTLIVQADESVTGHQPFLIEKGEIAAPPAPAPRLSSAVHPDSILPDEDYEDDEEEL 813 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 E + + SE RKRRRRRRRR + D+ Sbjct: 814 EESAEAEAEDESEGEAVASERGDDQPRKRRRRRRRRGGERESRADDANGSDEDGAEGDDE 873 Query: 663 SFDMYMEPSDITNHNLLENGAHGFT 687 + E D + Sbjct: 874 TESASGEGDDEARAEGEDRSEADSA 898 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 72/90 (80%), Positives = 82/90 (91%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE D+ES +KQ++GNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL 90 YGGNRHGFL F EIHPDYYQIP +DRQAL+ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALI 90 >gi|325579065|ref|ZP_08149021.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392] gi|325159300|gb|EGC71434.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392] Length = 937 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 189/547 (34%), Positives = 292/547 (53%), Gaps = 14/547 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPADYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERIE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++++++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR + E R V I VV + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAVHSIEKRHDVDIIVVPNEAMETPHFSVFRVREG 490 Query: 572 QALVNTGHKVGS--------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + L + + S + + + I + Sbjct: 491 EELNELSYNLTKFHDAQDDTFVPEESLVSRNIETAAVTSEQVMESAAVSLSIPTAAPAPV 550 Query: 624 STGVIRK 630 Sbjct: 551 ERKSEEP 557 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|301155713|emb|CBW15181.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Haemophilus parainfluenzae T3T1] Length = 933 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 189/547 (34%), Positives = 293/547 (53%), Gaps = 14/547 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPADYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERIE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++++++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR + E R V I VV + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAVHSIEKRHDVEIIVVPNEAMETPHFSVFRVREG 490 Query: 572 QALVNTGHKV--------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + L + + + S + + + I + Sbjct: 491 EELNELSYNLAKFHEAQDDAFVPEESLVSRNIETAAVTSEQVMESAAVSLSIPTAAPAPV 550 Query: 624 STGVIRK 630 Sbjct: 551 ERKPEGP 557 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|91210236|ref|YP_540222.1| ribonuclease E [Escherichia coli UTI89] gi|117623270|ref|YP_852183.1| ribonuclease E [Escherichia coli APEC O1] gi|218557966|ref|YP_002390879.1| ribonuclease E [Escherichia coli S88] gi|237706930|ref|ZP_04537411.1| rnase E [Escherichia sp. 3_2_53FAA] gi|91071810|gb|ABE06691.1| RNase E [Escherichia coli UTI89] gi|115512394|gb|ABJ00469.1| Rnase E [Escherichia coli APEC O1] gi|218364735|emb|CAR02425.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Escherichia coli S88] gi|226898140|gb|EEH84399.1| rnase E [Escherichia sp. 3_2_53FAA] gi|294493680|gb|ADE92436.1| ribonuclease E [Escherichia coli IHE3034] gi|315287424|gb|EFU46835.1| ribonuclease E [Escherichia coli MS 110-3] gi|323957908|gb|EGB53620.1| rne/Rng family protein ribonuclease [Escherichia coli H263] Length = 1061 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|153216572|ref|ZP_01950523.1| ribonuclease E [Vibrio cholerae 1587] gi|124114201|gb|EAY33021.1| ribonuclease E [Vibrio cholerae 1587] Length = 1052 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E+ + R + A+ + V + + E ++ N Sbjct: 551 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|255745222|ref|ZP_05419171.1| ribonuclease E [Vibrio cholera CIRS 101] gi|262155918|ref|ZP_06029039.1| ribonuclease E [Vibrio cholerae INDRE 91/1] gi|255737052|gb|EET92448.1| ribonuclease E [Vibrio cholera CIRS 101] gi|262030229|gb|EEY48872.1| ribonuclease E [Vibrio cholerae INDRE 91/1] Length = 1049 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 202/664 (30%), Positives = 317/664 (47%), Gaps = 39/664 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608 + + + D ++ +E + P + Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547 Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + ++Q + + D + Sbjct: 548 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D + N+ + P E N ++ P ++ Sbjct: 608 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 667 Query: 719 WKRR 722 RR Sbjct: 668 QDRR 671 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|110641260|ref|YP_668990.1| ribonuclease E [Escherichia coli 536] gi|300982571|ref|ZP_07176193.1| ribonuclease E [Escherichia coli MS 200-1] gi|110342852|gb|ABG69089.1| ribonuclease E [Escherichia coli 536] gi|300307152|gb|EFJ61672.1| ribonuclease E [Escherichia coli MS 200-1] gi|324013283|gb|EGB82502.1| ribonuclease E [Escherichia coli MS 60-1] Length = 1061 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|191172380|ref|ZP_03033921.1| ribonuclease E [Escherichia coli F11] gi|190907264|gb|EDV66862.1| ribonuclease E [Escherichia coli F11] Length = 1061 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|312971221|ref|ZP_07785399.1| ribonuclease E [Escherichia coli 1827-70] gi|310336423|gb|EFQ01609.1| ribonuclease E [Escherichia coli 1827-70] Length = 1058 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|323953230|gb|EGB49096.1| rne/Rng family protein ribonuclease [Escherichia coli H252] Length = 1061 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|323973327|gb|EGB68516.1| rne/Rng family protein ribonuclease [Escherichia coli TA007] Length = 1058 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 548 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 607 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|254468764|ref|ZP_05082170.1| ribonuclease E [beta proteobacterium KB13] gi|207087574|gb|EDZ64857.1| ribonuclease E [beta proteobacterium KB13] Length = 738 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 210/642 (32%), Positives = 306/642 (47%), Gaps = 13/642 (2%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + I + + + + + E + ++ D + Sbjct: 10 QSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNYGVDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + K K+ I +VI Q ++VQ+ KEERGNKGAA+TT+LSLAGRY VLM Sbjct: 70 FKEISKEFYSKKSRKKNLSIADVINEGQEVIVQVSKEERGNKGAALTTFLSLAGRYIVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+S+ ISR+I KE+ L+V GM VI RTAG + EI+ D +YL + Sbjct: 130 PNSSESGGISRRIEGDERSNF-KEVLSQLKVKKGMSVIGRTAGIGASVEEIQWDLDYLTQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 L + ++ + AP L+Y+E NL+ RAIRD + DI EI++ + Y +A FM +MP Sbjct: 189 LSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIYDQASQFMNHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 YA ++ YE+ +F + IE Q++S EV LPS G ++I+ TEALVSIDVNS RST Sbjct: 249 DYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEALVSIDVNSSRST 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA TNLEAA E+A+QLRLRD+ GLIVVDFIDME K+ R VE+ L+++LK D Sbjct: 309 KGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQREVEECLRDALKHD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 +AR+Q G IS FGL+E+SRQR+R S+ E++ C C G G IR S AL I+R ++E Sbjct: 369 KARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQSSALHIIRMIQEQ 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + I V DV +LLN+KR I++ E+ I ++ F I Sbjct: 429 SNKKQGQKISVQVPVDVATFLLNEKREIIIQTESEGNNKIFIIANKYFDVPQFKITSSDL 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV---------S 621 + +V D E + + E N + Sbjct: 489 GNKKGLSYQEVDVPDVENLDDNEQETKVKQIPAVKGVIPEKRSRKSKNKSLFGFIKGLIA 548 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R ++ H + + N + S+ N + Sbjct: 549 SDDDATEDFSEAASDRNNESSQHLEESEGNKKPYRNNRRRRNNRSRNYRSNQQNQENVNK 608 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 V + S ++S N S D K R R+K Sbjct: 609 KPEMVMVETPVDVEKNSDKNLDSVNKSKD---KPKRNQPRKK 647 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 57/77 (74%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ D+ +E+LD+E ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRMLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLPF EI ++Y Sbjct: 62 VDRHGFLPFKEISKEFY 78 >gi|297579534|ref|ZP_06941462.1| ribonuclease E [Vibrio cholerae RC385] gi|297537128|gb|EFH75961.1| ribonuclease E [Vibrio cholerae RC385] Length = 1052 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E+ + R + A+ + V + + E ++ N Sbjct: 551 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|114562666|ref|YP_750179.1| ribonuclease, Rne/Rng family protein [Shewanella frigidimarina NCIMB 400] gi|114333959|gb|ABI71341.1| RNAse E [Shewanella frigidimarina NCIMB 400] Length = 1124 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 208/651 (31%), Positives = 321/651 (49%), Gaps = 33/651 (5%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQELYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 G F+ + I+EV++ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIGREYFPKGYSFQGRPNIKEVLQEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVP GMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMAELEVPNGMGLIVRTAGVGKESTELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 WD ++E A + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 189 HHWDAIQEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKLHIGLVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERVKLYDSEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRSTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + ++ + + + + Sbjct: 429 EAIKENTTQIEAIVPVDVAAFLLNEKRKAIRITEERHQVEVYIIPDAHMQTPDYRVVRRK 488 Query: 570 PVQALVNTGHK---------------VGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + + +K + S P+ E + Sbjct: 489 SDDEVSESSYKRVEQPVAKLYEPRKLERAASPEPALKGFAAPQKAAEDTVKATPVNVAPV 548 Query: 615 IQDNIVSEEST------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 N S + K + + +T + + + + Sbjct: 549 ATSNQPSLFTRMISAISALFSGSEAEVKETKAAVSTKESTQTNTRRNTRRNDTRNDSANR 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + + ++G ++N +T + +++ + Sbjct: 609 NDKRNDSRRQRNDSDKSKDGTEARSQNKRNERNSRNTVQDDNAKNKPKTEK 659 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQELYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 62 ADRHGFLPLKEIGREYF 78 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 13/157 (8%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 T + + + ES +D E+ G +RR Sbjct: 799 ETDATAVVEVKAETTQADVDTVTETVVASTDVAAETDESSSSAEDATTDSEAEGREGQRR 858 Query: 633 RR-----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM--YMEPSDITNHNLL 679 R RRRR T V + ++ +D P + Sbjct: 859 SRRSPRHLRAAGQRRRRDDETGSTQPAVFTPNDELEKQLDAEQARTQAQAPVTEAIVESV 918 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 A + + + PV + E + +++ P+ + Sbjct: 919 TKPAETVSTAAETATKPVEVLKAEVNKANAAPVNVEK 955 >gi|327484564|gb|AEA78971.1| Ribonuclease E [Vibrio cholerae LMA3894-4] Length = 1052 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E+ + R + A+ + V + + E ++ N Sbjct: 548 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 607 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 608 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 645 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|254497896|ref|ZP_05110661.1| ribonuclease E [Legionella drancourtii LLAP12] gi|254352894|gb|EET11664.1| ribonuclease E [Legionella drancourtii LLAP12] Length = 677 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 204/667 (30%), Positives = 321/667 (48%), Gaps = 33/667 (4%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + +L + A+ A+ + D+ I +++ I + E S+ + + Sbjct: 2 EKMLINAMQAEEVRVALIKNNHLFDLDIECPGEVKKKGNIYKATVTRREPSLDAVFVEYG 61 Query: 147 SN-------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 S E + + I +I+ Q LL+Q+ KEERGNKGAA+TT+ Sbjct: 62 SKRQGFLPLKEIAPEYLSRNPDDFGDEKPPITTLIREGQELLIQVDKEERGNKGAALTTF 121 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 ++LAG Y VLMPN + ISR+I + L+E L +P MG+I+RTAG +++ Sbjct: 122 ITLAGCYLVLMPNNPRSGGISRRIEGDERDE-LRETLNALTLPEDMGLIIRTAGVGKSQE 180 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E++ D L W ++++ +AP L+++EGN+I R+IRD K ISEII+ + Y Sbjct: 181 ELQDDLNMLCNQWQSIKQAYNTELAPCLIHQEGNVIIRSIRDNLRKSISEIIIDDQISYI 240 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 EA+ ++ + P + ++ Y P+F GIE Q+++ +Q +V LPS G ++I++TEAL Sbjct: 241 EARKYVGRVKPEFLPNLKLYNSSVPLFNFYGIESQIETAYQRQVMLPSGGALVIDRTEAL 300 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 VSIDVNS ++T IE TA TN+EAA+EIARQLRLRDL GL+V+DFIDM KN R V Sbjct: 301 VSIDVNSAKATGGSDIEATAFNTNIEAADEIARQLRLRDLGGLVVIDFIDMGSSKNQRDV 360 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 E +LKE+L+ DRAR+QVG IS FGLLEMSRQR+R S+ E+ +VC C+G G +R+ S Sbjct: 361 ENRLKEALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEVCPRCEGRGTVRNIQSH 420 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 LSI R +EE L+ I V ++ +++N+KR I + E R VS+ ++ L Sbjct: 421 GLSITRLIEEEALKDKTAEIQVQLPPEMATFIMNEKRNFIRDIEKRHSVSVMIIANPYLH 480 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAP------SYDKNIECVWQDEALLPIPKSESLE 613 + I + Q + + + +++L+ Sbjct: 481 SPQYTITRLKEDNVGKTKKPSYTLIQQPELQVTANAQEALSRDEPAVKPFTGHQPAKNLQ 540 Query: 614 ----------------DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 D++ + + + + + + R G + + Sbjct: 541 TGFIKRLWSSLFGGHTDVEAVSPPQHTKKTPARNQNQGKSSRGTGTGTSTGTGTGTGTGS 600 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP---PVSTPEMESSNSSSDPIVK 714 N + PS A+ T P S P + S + Sbjct: 601 NERRSQNNRRRRPSGNQQQRANNPSANAATTANTNPNPQHRRRSNPNQQQQGGSRPASAR 660 Query: 715 KTRWWKR 721 KR Sbjct: 661 GEGNKKR 667 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M MLI+A EE RV ++++N + +LD E + + KGNIY A VTR EPSL A FV+ Sbjct: 1 MEK-MLINAMQAEEVRVALIKNNHLFDLDIECPGEVKKKGNIYKATVTRREPSLDAVFVE 59 Query: 61 YGGNRHGFLPFLEIHPDY 78 YG R GFLP EI P+Y Sbjct: 60 YGSKRQGFLPLKEIAPEY 77 >gi|229528952|ref|ZP_04418342.1| ribonuclease E [Vibrio cholerae 12129(1)] gi|229332726|gb|EEN98212.1| ribonuclease E [Vibrio cholerae 12129(1)] Length = 1052 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E+ + R + A+ + V + + E ++ N Sbjct: 551 PQPVAEAQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|157160611|ref|YP_001457929.1| ribonuclease E [Escherichia coli HS] gi|157066291|gb|ABV05546.1| ribonuclease E [Escherichia coli HS] Length = 1061 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|15642032|ref|NP_231664.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591522|ref|ZP_01678786.1| ribonuclease E [Vibrio cholerae 2740-80] gi|121729886|ref|ZP_01682313.1| ribonuclease E [Vibrio cholerae V52] gi|153823923|ref|ZP_01976590.1| ribonuclease E [Vibrio cholerae B33] gi|227082157|ref|YP_002810708.1| ribonuclease E [Vibrio cholerae M66-2] gi|229507881|ref|ZP_04397386.1| ribonuclease E [Vibrio cholerae BX 330286] gi|229511884|ref|ZP_04401363.1| ribonuclease E [Vibrio cholerae B33] gi|229519020|ref|ZP_04408463.1| ribonuclease E [Vibrio cholerae RC9] gi|229607426|ref|YP_002878074.1| ribonuclease E [Vibrio cholerae MJ-1236] gi|254849117|ref|ZP_05238467.1| ribonuclease E [Vibrio cholerae MO10] gi|298497941|ref|ZP_07007748.1| ribonuclease E [Vibrio cholerae MAK 757] gi|9656575|gb|AAF95178.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546621|gb|EAX56812.1| ribonuclease E [Vibrio cholerae 2740-80] gi|121628376|gb|EAX60877.1| ribonuclease E [Vibrio cholerae V52] gi|126518555|gb|EAZ75778.1| ribonuclease E [Vibrio cholerae B33] gi|227010045|gb|ACP06257.1| ribonuclease E [Vibrio cholerae M66-2] gi|229343709|gb|EEO08684.1| ribonuclease E [Vibrio cholerae RC9] gi|229351849|gb|EEO16790.1| ribonuclease E [Vibrio cholerae B33] gi|229355386|gb|EEO20307.1| ribonuclease E [Vibrio cholerae BX 330286] gi|229370081|gb|ACQ60504.1| ribonuclease E [Vibrio cholerae MJ-1236] gi|254844822|gb|EET23236.1| ribonuclease E [Vibrio cholerae MO10] gi|297542274|gb|EFH78324.1| ribonuclease E [Vibrio cholerae MAK 757] Length = 1052 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 202/664 (30%), Positives = 317/664 (47%), Gaps = 39/664 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608 + + + D ++ +E + P + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + ++Q + + D + Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D + N+ + P E N ++ P ++ Sbjct: 611 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 670 Query: 719 WKRR 722 RR Sbjct: 671 QDRR 674 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254785799|ref|YP_003073228.1| ribonuclease E [Teredinibacter turnerae T7901] gi|237684129|gb|ACR11393.1| ribonuclease E [Teredinibacter turnerae T7901] Length = 1070 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 215/624 (34%), Positives = 321/624 (51%), Gaps = 31/624 (4%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+ + D E + ++ +E A + + Sbjct: 11 PEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEYDKGRNGFLP- 69 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++++ P + + I++V+K ++VQ+ KEERGNKGAA+TT++S Sbjct: 70 -------LKEISREYFLKQPNEIDGRIRIKDVVKEGMEVIVQVDKEERGNKGAALTTFIS 122 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN + ISR+I + LK+ +E+P GMG+I+RTAG R+ E+ Sbjct: 123 LAGRYLVLMPNNPRAGGISRRIDGDDRSE-LKDALSQIEIPNGMGIIVRTAGVGRSAEEL 181 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D YL LW+N++E A S AP +++E N+I RAIRD DI E+IV Y +A Sbjct: 182 QWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAYNQA 241 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 DF++++MP+Y V+ YE P+F IE Q+++ + EV LPS G ++I+ TEALVS Sbjct: 242 ADFVQMVMPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEALVS 301 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NS R+T+ IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM+ +N R+VE Sbjct: 302 IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRAVEN 361 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +++++LK DRARVQVG IS FGLLEMSRQR+R S+ E+T+KVC C G G IR S+AL Sbjct: 362 RVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSIAL 421 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 SILR VEE + + I V YLLN+KR +I + E R + V+ E+ Sbjct: 422 SILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIENRHQTRVTVLPNTEMVTP 481 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC---------VWQDEALLPIPKSESL 612 + + + + + + Q D + V Q P P+ Sbjct: 482 HYEVTRLRDDDDTSEISYTIELNHQEDQDDSSAPTAPVAMPKPVVQQLAPSQPAPEPVKQ 541 Query: 613 EDIQDNIVSE-------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + + +R + + G ++ + Sbjct: 542 APAKTAEGPSLIARIIDALKSLFAPEEEAKPATKGNQRSHQKKRNANTGNRNNRNRKPRD 601 Query: 660 IDDSFDMYMEPSDITNHNLLENGA 683 D D + ++G Sbjct: 602 RDRDGDETSDNRKQQRDARSDSGK 625 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD E+ K+Q K NIY K+TR+EPSL+AAFV+Y Sbjct: 2 KRMLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEYD 61 Query: 63 GNRHGFLPFLEIHPDYY--QIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 R+GFLP EI +Y+ Q D + +K+ + D G+ Sbjct: 62 KGRNGFLPLKEISREYFLKQPNEIDGRIRIKDVVKEGMEVIVQVDKEERGN 112 >gi|325497608|gb|EGC95467.1| ribonuclease E [Escherichia fergusonii ECD227] Length = 1056 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 200/662 (30%), Positives = 316/662 (47%), Gaps = 48/662 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ------------ 616 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEESPERKRPEQPALATFAMPDVPPVPPAPAEPAVK 547 Query: 617 ---------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 +I S ++ + +P Sbjct: 548 AAPAPKAAEPAATPAQPGLLSRFFAALKSIFSGSDDAKPAEQPAPKAAEKPERQQDRRKP 607 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + +N D+ E SD N E+ D + + ++ Sbjct: 608 RQNTRRDRNERRDTRSERTENSDNREENRRNRRQAQGAESRDNRQQVNDIEKTKPTDEQQ 667 Query: 710 DP 711 P Sbjct: 668 TP 669 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|213865432|ref|ZP_03387551.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 975 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 181/542 (33%), Positives = 283/542 (52%), Gaps = 7/542 (1%) Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 +++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMPN + ISR+I + L Sbjct: 1 MLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTE-L 59 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 KE LE+P GMG+I+RTAG ++ ++ D + ++ W+ +++ A + AP L+++E Sbjct: 60 KEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQES 119 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHPIFFRSGI 351 N+I RA RD +DI EI++ K A+ + L P ++ ++ Y P+F I Sbjct: 120 NVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRPDFSSKIKLYTGEIPLFSHYQI 179 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E Q++S Q EV LPS G ++I+ TEAL +ID+NS R+TR IE+TA TNLEAA+EIA Sbjct: 180 ESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIA 239 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++DRAR+Q+ IS FGLLEMSRQR Sbjct: 240 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 299 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ ES+ VC C G G +R S++LSILR +EE L+ + + YL Sbjct: 300 LSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYL 359 Query: 532 LNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS-DSQAPS 589 LN+KR + E R GV +V ++ + + + + + + +A + Sbjct: 360 LNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVRKGEETPTLSYMLPKLHEEAMA 419 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 E + P + ++ D+ E + ++ A G+ Sbjct: 420 LPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSV---ATAKKDNVAAEQPAQPGL 476 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 S + + + + + + + N + Sbjct: 477 FSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRDNRAR 536 Query: 710 DP 711 Sbjct: 537 RD 538 >gi|145628780|ref|ZP_01784580.1| ribonuclease E [Haemophilus influenzae 22.1-21] gi|144979250|gb|EDJ88936.1| ribonuclease E [Haemophilus influenzae 22.1-21] Length = 935 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 201/650 (30%), Positives = 320/650 (49%), Gaps = 33/650 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + +AK+ +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +++++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G +R S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I V + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETPHFSVFRLRDG 490 Query: 572 QALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPKSESL-------EDIQDNIVS 621 + + + + + + + + A++ P ES E + Sbjct: 491 EEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVER 550 Query: 622 EEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + R R + S ++ Sbjct: 551 KSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNET 610 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + E E STP E+ ++P+ + Sbjct: 611 ERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ 660 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|218694618|ref|YP_002402285.1| ribonuclease E [Escherichia coli 55989] gi|307310138|ref|ZP_07589788.1| ribonuclease, Rne/Rng family [Escherichia coli W] gi|218351350|emb|CAU97056.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Escherichia coli 55989] gi|306909856|gb|EFN40350.1| ribonuclease, Rne/Rng family [Escherichia coli W] gi|315060362|gb|ADT74689.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli W] gi|323379077|gb|ADX51345.1| ribonuclease, Rne/Rng family [Escherichia coli KO11] Length = 1061 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 551 VAPSPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 S + S + N E + T + +++ Sbjct: 611 PRQNSRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQTEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|269102255|ref|ZP_06154952.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761] gi|268162153|gb|EEZ40649.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761] Length = 1095 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 205/629 (32%), Positives = 324/629 (51%), Gaps = 10/629 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAKEYFPQDYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGEERTQ-LKAALSTLELPHGMGLIVRTAGVGKSAEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W V+E A AP L+++E N+I RAIRD +DI EI++ K + A+D +KL+ P Sbjct: 188 WSAVKEAADAQPAPFLIHQESNVIARAIRDYLRRDIGEILIDSPKIFERARDHIKLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FISRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ VC C G G +R S++LSILR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + ++ + YLLN+KR ++ E V + +V ++ F + + Sbjct: 428 LKDNSSQVLAIVPVAIASYLLNEKRRSVQHIEKYHDVRVIIVPNSDMETPHFEVSRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE----SLEDIQDNIVSEESTGV 627 + +++ A + E V + + + + I ++ + Sbjct: 488 EEQEALSYRIPKLLAAQREAETQEPVQPERVIKKREEPVLQGFTAPKEPAPIAKPAASKL 547 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++ R A + + +S Q +++ + ++ N Sbjct: 548 AVQQPSIFNRIFSAIANFFSSHMSKKEEEQQPQENTNNRRNNNRRNDRNDNRRNDNRRND 607 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + + E ++ ++ +K Sbjct: 608 NRRNDNRRNNRQQDSEQRDNRNNERQEKD 636 Score = 123 bits (309), Expect = 7e-26, Method: Composition-based stats. Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 6/109 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y YQ + ++ L + + + + Sbjct: 61 RHGFLPLKEIAKEYFPQDYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 109 >gi|260361709|ref|ZP_05774736.1| ribonuclease E [Vibrio parahaemolyticus K5030] gi|308111281|gb|EFO48821.1| ribonuclease E [Vibrio parahaemolyticus K5030] Length = 657 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 193/518 (37%), Positives = 289/518 (55%), Gaps = 6/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 191 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + + +A + E D I + Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEP 528 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 >gi|315296715|gb|EFU56010.1| ribonuclease E [Escherichia coli MS 16-3] Length = 1061 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPADPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|170683427|ref|YP_001744094.1| ribonuclease E [Escherichia coli SMS-3-5] gi|170521145|gb|ACB19323.1| ribonuclease E [Escherichia coli SMS-3-5] Length = 1057 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFSALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|301029701|ref|ZP_07192755.1| ribonuclease E [Escherichia coli MS 196-1] gi|299877389|gb|EFI85600.1| ribonuclease E [Escherichia coli MS 196-1] Length = 1058 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|194438115|ref|ZP_03070208.1| ribonuclease E [Escherichia coli 101-1] gi|253773892|ref|YP_003036723.1| ribonuclease E [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161190|ref|YP_003044298.1| ribonuclease E [Escherichia coli B str. REL606] gi|300928364|ref|ZP_07143898.1| ribonuclease E [Escherichia coli MS 187-1] gi|194423051|gb|EDX39045.1| ribonuclease E [Escherichia coli 101-1] gi|242376887|emb|CAQ31605.1| RNase E, subunit of ribonuclease E and degradosome [Escherichia coli BL21(DE3)] gi|253324936|gb|ACT29538.1| ribonuclease, Rne/Rng family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973091|gb|ACT38762.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli B str. REL606] gi|253977305|gb|ACT42975.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli BL21(DE3)] gi|300463622|gb|EFK27115.1| ribonuclease E [Escherichia coli MS 187-1] Length = 1061 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|218531875|ref|YP_002422691.1| ribonuclease, Rne/Rng family [Methylobacterium chloromethanicum CM4] gi|218524178|gb|ACK84763.1| ribonuclease, Rne/Rng family [Methylobacterium chloromethanicum CM4] Length = 1046 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 287/550 (52%), Positives = 370/550 (67%), Gaps = 7/550 (1%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 348 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 407 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKE+ L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL Sbjct: 408 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 467 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE YREAKDFM++LMP +++V+ Y Sbjct: 468 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 527 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 DP PIF R G+E QLD++ T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 528 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 587 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE---KKNNRSVEKKLKESLKKDRARVQV 456 L+TNLEAAEE+ARQ+RLRDLAGL+V+DFID K+NNR+VEK+L E+LK DRAR+QV Sbjct: 588 LKTNLEAAEEVARQVRLRDLAGLVVIDFID---MEEKRNNRAVEKRLNEALKNDRARIQV 644 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G IS FGLLEMSRQRIR+ VLES++ C +C G+G++R+ SSVAL ILRS+EE LL+ + Sbjct: 645 GRISPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSAS 704 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALV 575 HN+++ T ++ LY+LNQKRA + + E RF V+I + L A F +E+G P Sbjct: 705 HNVVLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHE 764 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 V + + +P Y+ E+ +E + E + R Sbjct: 765 GPVTGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGR 824 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 RRRR A + + DS D + ++ + + P Sbjct: 825 RRRRRRRRGGRASGEGEARARDEDGTDSEDGAEDGTEDGDDAPDSEPEAAEAALGAAAEP 884 Query: 696 PVSTPEMESS 705 + + +++ Sbjct: 885 DETASDADAN 894 Score = 177 bits (447), Expect = 7e-42, Method: Composition-based stats. Identities = 67/142 (47%), Positives = 89/142 (62%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y Sbjct: 3 NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F EIHPDYYQIP +DR AL++ + + + + Sbjct: 63 GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122 Query: 122 EVAPIANFSQETEEESIISANN 143 + + + E S + + Sbjct: 123 RGSRPDDTVKSQEAVSDAGSED 144 >gi|324113879|gb|EGC07853.1| rne/Rng family protein ribonuclease [Escherichia fergusonii B253] Length = 1059 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 200/662 (30%), Positives = 316/662 (47%), Gaps = 48/662 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ------------ 616 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEESPERKRPEQPALATFAMPDVPPVPPAPAEPAVK 550 Query: 617 ---------------------------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 +I S ++ + +P Sbjct: 551 AAPAPKAAEPAATPAQPGLLSRFFAALKSIFSGSDDAKPAEQPAPKAAEKPERQQDRRKP 610 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + +N D+ E SD N E+ D + + ++ Sbjct: 611 RQNTRRDRNERRDTRSERTENSDNREENRRNRRQAQGAESRDNRQQVNDIEKTKPTDEQQ 670 Query: 710 DP 711 P Sbjct: 671 TP 672 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|332342630|gb|AEE55964.1| ribonuclease E (RNase E) [Escherichia coli UMNK88] Length = 1061 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|309701356|emb|CBJ00657.1| ribonuclease E [Escherichia coli ETEC H10407] Length = 1061 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|77460387|ref|YP_349894.1| RNAse E [Pseudomonas fluorescens Pf0-1] gi|77384390|gb|ABA75903.1| putative ribonuclease E [Pseudomonas fluorescens Pf0-1] Length = 1082 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 224/645 (34%), Positives = 325/645 (50%), Gaps = 19/645 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 191 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 T + A + ++++ L+ + + N Sbjct: 491 EAATNQSSYEIAAAAADVEDVQPAAATRTLVRQEAAVKTAPARANAPVPTEVAAPAPAPA 550 Query: 634 RRRRRRP--------------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 P AT V + + N N Sbjct: 551 PVAAPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERRNGRQQSRNRNGR 610 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723 + E E V++ R + R+ Sbjct: 611 RDEERKPREERAPREERAPREPREERQPREPREVREPREVREPRE 655 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 62 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 106 >gi|251793108|ref|YP_003007834.1| ribonuclease E [Aggregatibacter aphrophilus NJ8700] gi|247534501|gb|ACS97747.1| ribonuclease E (RNase E) [Aggregatibacter aphrophilus NJ8700] Length = 959 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 205/665 (30%), Positives = 333/665 (50%), Gaps = 39/665 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+++I Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPADYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K Y +AK +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE ++++++++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I VV + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHNVDIVVVPNEAMETPHFSVFRVRDG 490 Query: 572 QALVNTGHK---------VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + + + ++ +NI+ + + + E Sbjct: 491 EEVNELSYNLVHLHQDQDETFVAEESLVSRNIDSAEAETPAVESAAVSLAITMPAPEPVE 550 Query: 623 --------------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ ++ + ++ R ++ + + + +D Sbjct: 551 HKGKSAPSLLSRLLSVLKGLFASEPKQEEQAKKARNNNRNSNNRNRRNQERRNSRRQRND 610 Query: 663 SFD----MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + D E S+ N N N H + + E ++ + S+ + ++ + Sbjct: 611 NADVQVMERTEKSEAQNRNQERNARHNRKAEVIEEVINQNVIESATNETKSEQVTQRRQR 670 Query: 719 WKRRK 723 RK Sbjct: 671 RDLRK 675 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|320325302|gb|EFW81369.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. B076] Length = 1083 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 225/645 (34%), Positives = 330/645 (51%), Gaps = 19/645 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + + A + + I + L ++ V Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 634 RRRRRRPA---------------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 P+ + A VV + + + + + N Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E E+ S+ + R + RK Sbjct: 608 RRDEERKPREERAPREERTVREPREAREDSAPREERPARTSRERK 652 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|119478177|ref|ZP_01618233.1| ribonuclease E [marine gamma proteobacterium HTCC2143] gi|119448686|gb|EAW29930.1| ribonuclease E [marine gamma proteobacterium HTCC2143] Length = 956 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 199/589 (33%), Positives = 312/589 (52%), Gaps = 23/589 (3%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ P + ++ I++V+K ++VQ+ KEERGNKGAA+TT++SLAGRY VL Sbjct: 84 KEISRDYFYRQPSDVQGRFKIRDVVKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVL 143 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR I LK+ + +P GMG I+RTA R+ E++ D +Y Sbjct: 144 MPNNPRAGGISRSIEGEERSD-LKDALNNMAIPKGMGAIVRTAAVGRSAEELQWDLDYQA 202 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 ++WD +++ A + AP L+ ++ N+I RAIRD +DI ++++ E+ Y +A +F+ +M Sbjct: 203 QIWDAIKKAAEDQPAPLLLLQDSNVIIRAIRDYLREDIDQVLIDAEEAYTDAMNFVTRIM 262 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P Y +R Y+DP P+F R IE Q+++ Q +V LPS G ++I+ TEALVSID+NS R+ Sbjct: 263 PHYESRIRLYQDPVPLFNRYQIESQIETAFQRDVDLPSGGSIVIDPTEALVSIDINSARA 322 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRD+ GLIV+DFIDM KN R+VE +++++L Sbjct: 323 TKGGNIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMSAAKNQRAVENRMRDALNI 382 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E++ KVC C G G IR S++LSILR VEE Sbjct: 383 DRARVQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCTGQGTIRDTKSLSLSILRLVEE 442 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + I +V YLLN+KR I + E R GV + + +L F +++ Sbjct: 443 SASKERSAEIRALVPVNVASYLLNEKRQPIHDIELRTGVRVVIAPIPQLETPHFELQRLR 502 Query: 570 PVQ-------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 + + + A ++ + ++ Sbjct: 503 DDEIGKDVEISYKMQTEIADETSIQVQQKAAAPQQAAVQSIAPPAPAPLAAAKANIAPDT 562 Query: 617 DNIVSE--------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + G ++ +++ + + + N + + + Sbjct: 563 ATKSPGLLSKIIGFFTGGDKDDEKKDEQKKPEKRESTNRRPQNRGGQQNNNRNRNRNRNK 622 Query: 669 EPSDITNH-NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ N N G T++ + + P + P ++ Sbjct: 623 SRNESRNESNDRNEGNDRGTKDGNRNAAPQQKKTHDKVEPREAPAANES 671 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 44/108 (40%), Positives = 65/108 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ + Q+K NIY +TRVEPSL+AAF+D+G Sbjct: 15 KRMLINATQPEELRVGLVDGQRLYDLDIENRTRVQMKDNIYKGTITRVEPSLEAAFIDFG 74 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 +RHGFLP EI DY+ SD Q K ++ + +E + Sbjct: 75 ADRHGFLPLKEISRDYFYRQPSDVQGRFKIRDVVKEGTEVIVQVDKEE 122 >gi|188494840|ref|ZP_03002110.1| ribonuclease E [Escherichia coli 53638] gi|188490039|gb|EDU65142.1| ribonuclease E [Escherichia coli 53638] Length = 1061 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|218689037|ref|YP_002397249.1| ribonuclease E [Escherichia coli ED1a] gi|218426601|emb|CAR07429.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Escherichia coli ED1a] Length = 1061 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|261868549|ref|YP_003256471.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413881|gb|ACX83252.1| ribonuclease E (RNase E) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 960 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 199/635 (31%), Positives = 316/635 (49%), Gaps = 17/635 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+++I Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 69 EIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ + Y +AK +KL+ P Sbjct: 188 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE ++++++++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I VV + F + + Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMETPHFSVFRVRDG 487 Query: 572 QALVNTGHKVGS---------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + + + + ++ +NI+ + ++ + E Sbjct: 488 EEVNELSYNLARLHQGQDEIFVAEESLISRNIDTTPAETPVVESAAVSLSIPMPAPEPVE 547 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 R + + + + ++ Sbjct: 548 RKEQSGPSLLSRLLAALKGLFASEPK--QEEQNKKTRNNNRNSNNNRNRRNQERRNSRRN 605 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + EN +ES N + + K+ R Sbjct: 606 RNDNAENVVEEQTAEKAERVESRNRNQERNAKRNR 640 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|309788154|ref|ZP_07682760.1| ribonuclease E [Shigella dysenteriae 1617] gi|308924006|gb|EFP69507.1| ribonuclease E [Shigella dysenteriae 1617] Length = 1058 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFTERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + S + + Sbjct: 548 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSSGEETKPSEQAAPKVEAKPERQQDRRK 607 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|215486295|ref|YP_002328726.1| ribonuclease E [Escherichia coli O127:H6 str. E2348/69] gi|312968840|ref|ZP_07783047.1| ribonuclease E [Escherichia coli 2362-75] gi|215264367|emb|CAS08724.1| fused ribonuclease E: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli O127:H6 str. E2348/69] gi|312286242|gb|EFR14155.1| ribonuclease E [Escherichia coli 2362-75] Length = 1061 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|153830605|ref|ZP_01983272.1| ribonuclease E [Vibrio cholerae 623-39] gi|148873903|gb|EDL72038.1| ribonuclease E [Vibrio cholerae 623-39] Length = 1052 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 205/641 (31%), Positives = 321/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E + R + A+ + V + + E +D N Sbjct: 551 PQPVAEVQKPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|323967025|gb|EGB62451.1| rne/Rng family protein ribonuclease [Escherichia coli M863] gi|327253483|gb|EGE65121.1| ribonuclease E [Escherichia coli STEC_7v] Length = 1061 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 192/624 (30%), Positives = 302/624 (48%), Gaps = 11/624 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM---EPSDITNHNLLENGAHGF 686 + G++S + + +P+ T Sbjct: 551 AAPAPKAASTTPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKTETKPERQQDRRK 610 Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710 + N SD Sbjct: 611 PRQNNRRDRNERRDTRSERNEGSD 634 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|221068710|ref|ZP_03544815.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1] gi|220713733|gb|EED69101.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1] Length = 996 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 189/538 (35%), Positives = 292/538 (54%), Gaps = 6/538 (1%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q I +VI+ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A S L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP Sbjct: 189 LWSAIDGAAKASKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR++ ++ E C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + +V +LLN+KR+ I + E + V++ +V + + +E+ Sbjct: 429 SMKDNTAAVHCQVPVEVASFLLNEKRSEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSY-----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + + + P ++ E + ++ ++ I + + Sbjct: 489 DDSRLESMEASYKLADEPEEVTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPPRQ 546 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGN 110 >gi|323190598|gb|EFZ75870.1| ribonuclease E [Escherichia coli RN587/1] Length = 1054 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 548 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 607 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|323976543|gb|EGB71631.1| rne/Rng family protein ribonuclease [Escherichia coli TW10509] Length = 1061 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 192/624 (30%), Positives = 302/624 (48%), Gaps = 11/624 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM---EPSDITNHNLLENGAHGF 686 + G++S + + +P+ T Sbjct: 551 AAPAPKAASTTPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKTETKPERQQDRRK 610 Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710 + N SD Sbjct: 611 PRQNNRRDRNERRDTRSERNEGSD 634 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|324007924|gb|EGB77143.1| ribonuclease E [Escherichia coli MS 57-2] Length = 1061 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|56460457|ref|YP_155738.1| RNase E [Idiomarina loihiensis L2TR] gi|56179467|gb|AAV82189.1| RNase E [Idiomarina loihiensis L2TR] Length = 980 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 206/627 (32%), Positives = 308/627 (49%), Gaps = 21/627 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + F+ + I++V+K Q ++VQI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAKTYFPQGYTFQGRPNIKDVVKEGQEVIVQIDKEERGQKGAALTTFVSLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LKE L VP MG+I+RTAG ++K E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERS-ALKEALSDLNVPKEMGLIVRTAGVGKSKEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ + + A AP L+++E N+I RA+RD +DI E+++ K Y + + ++L+ P Sbjct: 188 WEAISKAADERPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSPKVYEQVRSHIQLIRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + + V+QYE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FLQRVKQYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAAEEIARQLRLRD+ GL+V+DFIDM ++ R VE +L++SL +DR Sbjct: 308 GGDIEETALQTNLEAAEEIARQLRLRDVGGLVVIDFIDMTPARHQRDVENRLRDSLSQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+QV IS FGL+EMSRQR+R S+ ES VC C G G IRS S+ALSILR +EE Sbjct: 368 ARIQVARISRFGLMEMSRQRLRPSLGESANNVCPRCNGQGTIRSSDSLALSILRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + DV YLLN+KR ++ E R V I ++ + F + + Sbjct: 428 IKDNTIQVHAQVPVDVATYLLNEKRQSVNHIEKRHNVKIVIIPNHHMETPHFEVLRIRDD 487 Query: 572 QALVNTG-----HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + ++S + +++ AL + + EE Sbjct: 488 EVPESASFELVQKPEQTESTVSITLTQDKAKFEEPALKGLQAPSAAPTPAPAPKVEEKKA 547 Query: 627 VIRKRRRR----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 R + + + + + Sbjct: 548 AQPSLLSRLATWFSGLFGSDEAQKQAEAEKEKERNAQNQRNQQRRGRNRRSGNRQQRGRN 607 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEME 703 EN + ST + Sbjct: 608 QSAGKDKEASKENTSAATEDKSTESRD 634 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ +EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 61 RHGFLPLKEIAKTYF 75 >gi|332758245|gb|EGJ88568.1| ribonuclease E [Shigella flexneri 4343-70] Length = 1058 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 547 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 548 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 607 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 608 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667 Query: 707 SSSDP 711 P Sbjct: 668 EQQAP 672 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|300112961|ref|YP_003759536.1| Rne/Rng family ribonuclease [Nitrosococcus watsonii C-113] gi|299538898|gb|ADJ27215.1| ribonuclease, Rne/Rng family [Nitrosococcus watsonii C-113] Length = 764 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 217/653 (33%), Positives = 325/653 (49%), Gaps = 34/653 (5%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149 A+ A+ D D+ I N ++ A I E S+ + D ++ + Sbjct: 11 AEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFIDYGADRQGFLPL 70 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ++V + ++ + +QEV+K Q L+VQ+ KEERGNKGAA++T++SLAGRY VL Sbjct: 71 KEVTRSYFQSHQREPGDRPKVQEVLKEGQELVVQVEKEERGNKGAALSTFISLAGRYLVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + +SR+I L E R LE+P GMG+I RTA + E++ D YL+ Sbjct: 131 MPNNPRAGGVSRRIEGEERS-MLLEAMRTLEIPEGMGLITRTAAVGKNAEELQWDLNYLL 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 LW +++ A AP L+Y+E ++I RA+RD DI EI++ Y+ A DFM+ +M Sbjct: 190 HLWRSIQAAAEGQPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQRAYDFMRQVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P R ++ Y+D +F R IE Q+++ Q EV LPS G ++++ TEAL +ID+NS R+ Sbjct: 250 PPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALTTIDINSARA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + IE+TAL TNLEAAEEIARQLRLRDL GLIV+DFIDM +N R+VE +L+E L++ Sbjct: 310 NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGLLEMSRQR+R S+ E+ VC C G G +R S+ LS+LR +EE Sbjct: 370 DRARVQIGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLGLSVLRLIEE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + +++ V +LLN+KRA + E R+G + VV L F IE+ Sbjct: 430 GAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFVVPNSHLETPTFEIERIK 489 Query: 570 PVQALV---------------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + N + PS + V L P P+ + + Sbjct: 490 DARKGESRMDKRIEMQSYQMANEPNPKKPALLPPSAIPDEPLVRAGSPLFPAPEPQPVTT 549 Query: 615 IQDN-----------IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 ++ + + A + A S + Sbjct: 550 EAQPDFLRRFWTTFMDGNQALGVAEGVTQETKVVSEEAGERGRAVPRRGRSQGRGRRGSG 609 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + S N + + + S + + + SS+ P + T Sbjct: 610 RQPNRKESTQGNESTTGLSSEAESGQV-ASEAKETQDMQDGTESSAAPSSRTT 661 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 4/112 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ +++LD E+ ++Q K NIY K+TR+EPSL A F+DYG Sbjct: 2 KRMLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFIDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPF---SDRQALLKESNIAQTDSEAVADDVTHGD 111 +R GFLP E+ Y+Q DR ++E + + G+ Sbjct: 62 ADRQGFLPLKEVTRSYFQSHQREPGDRPK-VQEVLKEGQELVVQVEKEERGN 112 >gi|301644498|ref|ZP_07244493.1| ribonuclease E [Escherichia coli MS 146-1] gi|301077162|gb|EFK91968.1| ribonuclease E [Escherichia coli MS 146-1] Length = 1061 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|300950181|ref|ZP_07164125.1| ribonuclease E [Escherichia coli MS 116-1] gi|300954376|ref|ZP_07166830.1| ribonuclease E [Escherichia coli MS 175-1] gi|300318612|gb|EFJ68396.1| ribonuclease E [Escherichia coli MS 175-1] gi|300450466|gb|EFK14086.1| ribonuclease E [Escherichia coli MS 116-1] gi|323942553|gb|EGB38720.1| rne/Rng family protein ribonuclease [Escherichia coli E482] Length = 1061 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|16129047|ref|NP_415602.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli str. K-12 substr. MG1655] gi|89107930|ref|AP_001710.1| fused ribonucleaseE endoribonuclease and scaffold for formation of degradosome [Escherichia coli str. K-12 substr. W3110] gi|170080735|ref|YP_001730055.1| RNase E [Escherichia coli str. K-12 substr. DH10B] gi|238900338|ref|YP_002926134.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli BW2952] gi|256023218|ref|ZP_05437083.1| ribonuclease E [Escherichia sp. 4_1_40B] gi|307137719|ref|ZP_07497075.1| ribonuclease E [Escherichia coli H736] gi|331641628|ref|ZP_08342763.1| ribonuclease E (RNase E) [Escherichia coli H736] gi|34395929|sp|P21513|RNE_ECOLI RecName: Full=Ribonuclease E; Short=RNase E gi|1651530|dbj|BAA35893.1| fused ribonucleaseE endoribonuclease and scaffold for formation of degradosome [Escherichia coli str. K12 substr. W3110] gi|1787325|gb|AAC74168.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli str. K-12 substr. MG1655] gi|169888570|gb|ACB02277.1| RNase E [Escherichia coli str. K-12 substr. DH10B] gi|238861250|gb|ACR63248.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli BW2952] gi|260449776|gb|ACX40198.1| ribonuclease, Rne/Rng family [Escherichia coli DH1] gi|315135716|dbj|BAJ42875.1| ribonuclease E [Escherichia coli DH1] gi|315618254|gb|EFU98844.1| ribonuclease E [Escherichia coli 3431] gi|331038426|gb|EGI10646.1| ribonuclease E (RNase E) [Escherichia coli H736] Length = 1061 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|323937824|gb|EGB34088.1| rne/Rng family protein ribonuclease [Escherichia coli E1520] Length = 1061 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAIPDV 537 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254226964|ref|ZP_04920528.1| ribonuclease E [Vibrio cholerae V51] gi|125620504|gb|EAZ48874.1| ribonuclease E [Vibrio cholerae V51] Length = 1052 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 205/641 (31%), Positives = 321/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E + R + A+ + V + + E +D N Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|296532551|ref|ZP_06895262.1| ribonuclease E [Roseomonas cervicalis ATCC 49957] gi|296267122|gb|EFH13036.1| ribonuclease E [Roseomonas cervicalis ATCC 49957] Length = 509 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 233/457 (50%), Positives = 311/457 (68%), Gaps = 4/457 (0%) Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 + D G +P +F R Y IQEVI+ RQI+LVQ+VKEERGNKGAA+TTY+SLAGR+ Sbjct: 45 KDDADENGREERRIPSRFMRHYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYISLAGRF 104 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 SVLMPN+ KG ISRKIT+ DRK L+E L +P GM +I+RTAGA K EI+RD E Sbjct: 105 SVLMPNSPKGGGISRKITSVADRKRLREAIDELNMPRGMSMIVRTAGAGLPKPEIRRDCE 164 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YL+RLWD++RE L S AP L+YEE +LIKR+IRD++ +DI EI V GE YR+A+DFM+ Sbjct: 165 YLLRLWDDIRERTLQSTAPALIYEEADLIKRSIRDVFGRDIEEIQVEGEGAYRQARDFMR 224 Query: 327 LLM-PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 +LM + +I + P+F R G++ QLD++ V L S GY++INQTEALV+IDVN Sbjct: 225 MLMPQNERKIRLYRDPTLPLFARHGVDAQLDAMMSPTVQLKSGGYIVINQTEALVAIDVN 284 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 SGR+TR+ IEDTAL+TN+EAAEEIARQLRLRD+AGLIV+DFIDME +N+ VE++LKE Sbjct: 285 SGRATRDRHIEDTALRTNMEAAEEIARQLRLRDMAGLIVIDFIDMESSRNDAQVERRLKE 344 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +LK DRAR+QVG IS+FGLLEMSRQR+R S+ E + C +C+G G +RS S AL +LR Sbjct: 345 ALKHDRARIQVGRISHFGLLEMSRQRLRPSLTEHSFITCPHCQGLGIVRSPESAALQVLR 404 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +EE + A I V D+ L++LN++R + E EAR+G+++ +L+ I Sbjct: 405 QIEEEGAKRRAAEIQVSIAPDLALHILNRRRDRLTEIEARYGMAVLFEADAKLSGPQIRI 464 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E+ A + + E + Sbjct: 465 ERLRAQTAPEPQSA---PAALRMDFAPEAEPERAEAP 498 >gi|218700412|ref|YP_002408041.1| ribonuclease E [Escherichia coli IAI39] gi|300938651|ref|ZP_07153380.1| ribonuclease E [Escherichia coli MS 21-1] gi|218370398|emb|CAR18203.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Escherichia coli IAI39] gi|300456436|gb|EFK19929.1| ribonuclease E [Escherichia coli MS 21-1] Length = 1061 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|193064526|ref|ZP_03045606.1| ribonuclease E [Escherichia coli E22] gi|194428415|ref|ZP_03060955.1| ribonuclease E [Escherichia coli B171] gi|260843324|ref|YP_003221102.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli O103:H2 str. 12009] gi|192927778|gb|EDV82392.1| ribonuclease E [Escherichia coli E22] gi|194413467|gb|EDX29749.1| ribonuclease E [Escherichia coli B171] gi|257758471|dbj|BAI29968.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli O103:H2 str. 12009] gi|323163695|gb|EFZ49516.1| ribonuclease E [Escherichia coli E128010] Length = 1061 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|192361431|ref|YP_001982146.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107] gi|190687596|gb|ACE85274.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107] Length = 947 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 216/623 (34%), Positives = 321/623 (51%), Gaps = 10/623 (1%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 D+ + + + S E + + + E + + Sbjct: 28 DIENRSREQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLPLKEISREYFSRNPGDNND 87 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++V+K ++VQI KEERGNKGAA+TT++SLAGRY VLMPN + ISR+I Sbjct: 88 GRIKIKDVLKEGTEVIVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 147 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK+ +EVP GMGVI+RTAG R+ E++ D YL++LW+++ A S AP Sbjct: 148 EDRAE-LKDALGEIEVPQGMGVIIRTAGVGRSAEELQWDLNYLLQLWESIENAAKRSPAP 206 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 +++E N+I RAIRD +D+ E+IV ++ + A F++ +MP+Y V+ Y+D P+ Sbjct: 207 EFLFQESNVIIRAIRDYLRQDVGEVIVDNKEAFDLAAGFIQQVMPNYRSKVKLYQDDIPL 266 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ Q EV LPS G ++I+ TEALV+ID+NS R+T+ IE+TALQTNLE Sbjct: 267 FNRYQIESQIETAFQREVKLPSGGSIVIDVTEALVAIDINSSRATKGGDIEETALQTNLE 326 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+EIARQLRLRD+ GL+V+DFIDM+ +N R VE +++++L DRARVQ+G IS FGLL Sbjct: 327 AADEIARQLRLRDMGGLVVIDFIDMQPVRNQREVENRMRDALMMDRARVQIGRISRFGLL 386 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQR+R S+ E+ +K+C C+G G IRS S+ALSILR VE+ + + I Sbjct: 387 EMSRQRLRPSLGETHSKICPRCEGVGTIRSTRSLALSILRLVEDEAQKDRSAEIRAICPV 446 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 V YLLN+KR TI EAR + +V EL F +++ G S Sbjct: 447 SVATYLLNEKRKTISSIEARNNTRVVIVPSAELMTPHFEVQRLRDDD----EGTLETSYK 502 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR--KRRRRRRRRRPATD 643 P D++ E + ++ + + E R + A D Sbjct: 503 IVPHVDEHKEEEEDATVKVGNVPKPLVQLTAPSQPAPEPAKKPGLLDRILKGIGNLFARD 562 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL--ENGAHGFTENYDVSIPPVSTPE 701 D + N + S + + +N H +N P Sbjct: 563 EDDKKKSKRDNKRDNRRNSSRNRRDNRRRDRKEDREIRDNLEHRANDNKVKEQEPEQRNN 622 Query: 702 MESSNSSS-DPIVKKTRWWKRRK 723 + + R R+ Sbjct: 623 RQQRDPQQGAEERGNRRQRTPRE 645 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD E+ ++Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQPEELRVALVDGQWLYDLDIENRSREQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|254286848|ref|ZP_04961801.1| ribonuclease E [Vibrio cholerae AM-19226] gi|150423139|gb|EDN15087.1| ribonuclease E [Vibrio cholerae AM-19226] Length = 1051 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 205/641 (31%), Positives = 321/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E + R + A+ + V + + E +D N Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|74311645|ref|YP_310064.1| ribonuclease E [Shigella sonnei Ss046] gi|73855122|gb|AAZ87829.1| RNase E [Shigella sonnei Ss046] gi|323165594|gb|EFZ51381.1| ribonuclease E [Shigella sonnei 53G] Length = 1061 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254251813|ref|ZP_04945131.1| Ribonucleases G and E [Burkholderia dolosa AUO158] gi|124894422|gb|EAY68302.1| Ribonucleases G and E [Burkholderia dolosa AUO158] Length = 686 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 134/565 (23%), Positives = 227/565 (40%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 24 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 82 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +I +Q + Sbjct: 83 IGLERAAFLHVADI----WQPRVA------------------------------------ 102 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 P +N + E+++ +V ++D G + + + + Sbjct: 103 --GEPQSNAPHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + E + A + R + ++P KG I R I L L Sbjct: 161 GISQKIESEAEREA-------VRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVAYLR 213 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I+ A + +D + R+ + + Sbjct: 214 KTW--ATIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTTRIQ---------------- 255 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 V + Y+ +F P+ + + Y P+F IE ++ Sbjct: 256 -----------VDSRETYQRLAEFAAEFTPAVSPKLHHYTGERPLFDLYNIETEIQRALS 304 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 305 RRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLG 364 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME ++ +V +LK++L +DR RV V S GL+EM+R+R R S+ Sbjct: 365 GIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHVL 424 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C+G G +++ +V ILR + Q+ V V+ L+++ + Sbjct: 425 CEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHLA 484 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 G +++ + L+ + + I Sbjct: 485 MLIDFIGKPVSLQVESNLSQEQYDI 509 >gi|30040864|gb|AAP16595.1| RNase E [Shigella flexneri 2a str. 2457T] gi|56383370|gb|AAN42707.2| RNase E [Shigella flexneri 2a str. 301] gi|332767694|gb|EGJ97887.1| ribonuclease E [Shigella flexneri 2930-71] Length = 1060 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 547 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 548 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 607 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 608 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667 Query: 707 SSSDP 711 P Sbjct: 668 EQQAP 672 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|309796572|ref|ZP_07690979.1| ribonuclease E [Escherichia coli MS 145-7] gi|308119884|gb|EFO57146.1| ribonuclease E [Escherichia coli MS 145-7] Length = 1061 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|284007271|emb|CBA72587.1| ribonuclease E [Arsenophonus nasoniae] Length = 1094 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 199/640 (31%), Positives = 321/640 (50%), Gaps = 28/640 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I N ++ A I E S+ +A D S Sbjct: 12 EELRVALVDGQRLYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYGSERHGFLPIK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I++V+K Q +++Q+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSHYQPHGRPNIKDVLKEGQEVIIQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ +++D +Y ++ Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLEIPDGMGLIVRTAGVGKSAEALQQDLQYRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330 W +++ A N AP L+++E N+I RA RD DI EI++ K A+ ++ + Sbjct: 191 WQAIKKAAENRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKIVDMARHHIEAIGRG 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR ++ E E R + + +V ++ + + + Sbjct: 431 ALKENTHEVHAIVPVPIASYLLNEKRQSVNEIERRQHNIRVIIVPNDQMQSPHYNVIRIR 490 Query: 570 PVQALVNTGHKVG----SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + + + +++ D E ++ + +S D ++ +V++ + Sbjct: 491 KGEEISALSYYLAQYHEAETNNLIDDAAGEKKLPEQPAISTFALQSQADTKNAVVAKSKS 550 Query: 626 GVIRKRRRRRRRRRPATD----------------HHDAGVVSDVSSIQNVIDDSFDMYME 669 K ++ + + + + + + + Sbjct: 551 SKQSKSTNKQTSKSLFSRITVFLKKLFIESQPPIEETVKKSKNSNDKRRNSERRNNRRPT 610 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 N N+ G T++ + + S+ Sbjct: 611 QRREQNDNIDNRQNRGHTDDLQARKSRNQKSQFNETQDSA 650 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIENPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 SERHGFLPIKEIAREYF 78 >gi|258625454|ref|ZP_05720347.1| ribonuclease E [Vibrio mimicus VM603] gi|258582258|gb|EEW07114.1| ribonuclease E [Vibrio mimicus VM603] Length = 1034 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 198/642 (30%), Positives = 314/642 (48%), Gaps = 26/642 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C +CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPHCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + E ++ + + E + + Sbjct: 491 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 545 Query: 632 RRRRRRRRPATDHHDAG---------------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + ++ A + ++ +P N Sbjct: 546 KAKAETQQQVETAQPAQPGLFSRLFKAIANLFSPAPEAAKAEAAVAQSSEQEKPRRERNE 605 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E + ++ P +K + Sbjct: 606 RNDRRRNPREKNRRRGNEESSERNDKEGATNNRKPQDRKPKQ 647 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|82777304|ref|YP_403653.1| ribonuclease E [Shigella dysenteriae Sd197] gi|81241452|gb|ABB62162.1| RNase E [Shigella dysenteriae Sd197] Length = 1061 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFTERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + S + + Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSSGEETKPSEQAAPKVEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|306814067|ref|ZP_07448240.1| ribonuclease E [Escherichia coli NC101] gi|305852704|gb|EFM53152.1| ribonuclease E [Escherichia coli NC101] Length = 1061 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|333019447|gb|EGK38730.1| ribonuclease E [Shigella flexneri K-304] Length = 1060 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|160874865|ref|YP_001554181.1| ribonuclease [Shewanella baltica OS195] gi|160860387|gb|ABX48921.1| ribonuclease, Rne/Rng family [Shewanella baltica OS195] gi|315267101|gb|ADT93954.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678] Length = 1158 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 210/644 (32%), Positives = 317/644 (49%), Gaps = 22/644 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 28 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 88 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614 + + +K A Y+ ++A P K E+ + Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566 Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + + + + + + ++ + +N + Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTSAANANRRNRRNDTRRPRNAQDADKAK 626 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + VS P E + P + + Sbjct: 627 EGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRPAKAEPK 670 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 80 ADRHGFLPLKEIAREYF 96 >gi|170720702|ref|YP_001748390.1| ribonuclease [Pseudomonas putida W619] gi|169758705|gb|ACA72021.1| ribonuclease, Rne/Rng family [Pseudomonas putida W619] Length = 1072 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 217/618 (35%), Positives = 313/618 (50%), Gaps = 9/618 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL VP MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ EA F++ +MP YA Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490 Query: 574 LV--NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 V N + ++ + + + + + EE Sbjct: 491 EVLNNQSSYEIAATETEEAPQPTATRTLVRQEAAVKTAPARANAPVPSAVEEQQPAAPAA 550 Query: 632 RRRRRRRR---PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + + + N Sbjct: 551 PAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPVVTAEKPATERTQRNEERRNGRQQSRNR 610 Query: 689 NYDVSIPPVSTPEMESSN 706 N E Sbjct: 611 NGRRDEERKPREERAERT 628 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 62 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 106 >gi|149192305|ref|ZP_01870514.1| ribonuclease E [Vibrio shilonii AK1] gi|148833858|gb|EDL50886.1| ribonuclease E [Vibrio shilonii AK1] Length = 1014 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 198/640 (30%), Positives = 317/640 (49%), Gaps = 15/640 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 39 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 98 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 99 EIAREYFPEGYTYQGRPSIKDVLSEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 158 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D +L+ Sbjct: 159 NNPRAGGISRRIEGEERTE-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLRFLLNN 217 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+N++ A + AP L+++E N+I RA+RD +DI EI++ Y A+ ++L+ P Sbjct: 218 WENIKGAADQNPAPFLIHQESNVIVRALRDYLRRDIGEILIDSNTIYERARQHIQLVRPD 277 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 278 FVNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 337 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 338 GSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRIDR 397 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 398 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 457 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR +I E V I +V ++ F + + Sbjct: 458 LKDNTSQALAIVPVPIASYLLNEKRRSINHIERVQEVKITIVPDSDMETPHFEVIRVREG 517 Query: 572 QALV------NTGHKVGSDSQAPSYDKNIECVWQDEALLP---IPKSESLEDIQDNIVSE 622 + + +++A + + ++ L P + Sbjct: 518 EEQDLLSYLLPKKLEALKEAEAKEAEVEAKPRKIEQPALQGFATPTQNAPTPAPKPSKPA 577 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + +++ R + + +++ +N Sbjct: 578 KVEVKKEEKQPGLISRILSAIGSLFSSNEEPKKEPEKKEEAPKNRNGRQRRNRNNDQRRR 637 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + D + + P + S D + + RR Sbjct: 638 NSKDSRDNDRNKNRRNKPARDEEKESKDNAQESRKQQNRR 677 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TRVEPSL+AAFVDYG Sbjct: 29 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 88 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 89 AERHGFLPLKEIAREYF 105 >gi|262167653|ref|ZP_06035356.1| ribonuclease E [Vibrio cholerae RC27] gi|262023858|gb|EEY42556.1| ribonuclease E [Vibrio cholerae RC27] Length = 1049 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 201/664 (30%), Positives = 316/664 (47%), Gaps = 39/664 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+T ++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTAFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608 + + + D ++ +E + P + Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547 Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + ++Q + + D + Sbjct: 548 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D + N+ + P E N ++ P ++ Sbjct: 608 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 667 Query: 719 WKRR 722 RR Sbjct: 668 QDRR 671 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|331662493|ref|ZP_08363416.1| ribonuclease E (RNase E) [Escherichia coli TA143] gi|331060915|gb|EGI32879.1| ribonuclease E (RNase E) [Escherichia coli TA143] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|301023271|ref|ZP_07187068.1| ribonuclease E [Escherichia coli MS 69-1] gi|300397116|gb|EFJ80654.1| ribonuclease E [Escherichia coli MS 69-1] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPADPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|300918688|ref|ZP_07135268.1| ribonuclease E [Escherichia coli MS 115-1] gi|300414162|gb|EFJ97472.1| ribonuclease E [Escherichia coli MS 115-1] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|15836492|ref|NP_301016.1| axial filament protein [Chlamydophila pneumoniae J138] gi|8979333|dbj|BAA99167.1| axial filament protein [Chlamydophila pneumoniae J138] Length = 515 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 289/566 (51%), Gaps = 65/566 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N++L++ +E R L++ ++ +L E + +Q+KGNIY +VT + ++Q+AF++ Sbjct: 1 MENEILLNI-ESKEIRYAHLKNGQLFDLTIERKKVRQLKGNIYRGRVTNILRNIQSAFIN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +GF+ +I + K + D +A+ ++ + + + + Sbjct: 60 IDERENGFIHISDI-----------LENSKKFEQMFDMDVDALPEEASEAPLLSSEEAPI 108 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE +K + Sbjct: 109 EE--------------------------------------------------FLKLDSPV 118 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G+KGA +T+ +S+ GRY VL+PN+ +SRKI +P R+ LK++ R E Sbjct: 119 LVQVVKEPIGSKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMREQLKQLIRSFE 177 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA + + + + L+ W + E ++ P L+Y E +++K+A+ Sbjct: 178 MPQDMGLICRTASTTASTEALINEAHDLLLTWKTILEKFYSTEQPCLLYSETDILKKAVI 237 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K+ +++ Y++ K +K P + + Y D P+F R IE ++D + Sbjct: 238 TCIDKNYKRLLIDDYATYQKCKHMLKKYSPDASIKIEYYRDSIPMFERFNIEKEIDKATR 297 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 298 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 357 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 358 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 417 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL-NQKRAT 538 +C YC G I++ SV + I R +++ + ++ + H ++ Y+ Sbjct: 418 LFTLCRYCSGNAIIKTPESVVIEIERDLKKVINHKEHSHLCLVVHPEIASYMKQENDDNE 477 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 478 MINLAKQLKAKLQINTSDSVHLNHYQ 503 >gi|209918338|ref|YP_002292422.1| ribonuclease E [Escherichia coli SE11] gi|218553662|ref|YP_002386575.1| ribonuclease E [Escherichia coli IAI1] gi|209911597|dbj|BAG76671.1| ribonuclease E [Escherichia coli SE11] gi|218360430|emb|CAQ97984.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Escherichia coli IAI1] gi|323947614|gb|EGB43618.1| rne/Rng family protein ribonuclease [Escherichia coli H120] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|307947218|ref|ZP_07662553.1| ribonuclease E [Roseibium sp. TrichSKD4] gi|307770882|gb|EFO30108.1| ribonuclease E [Roseibium sp. TrichSKD4] Length = 736 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 292/509 (57%), Positives = 363/509 (71%), Gaps = 1/509 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P D + + A DD + D A ++ ++E+ Sbjct: 188 PAVDAKDAATDEADAFEARSDADDDEDATEADTEEDDDAPVRARSRRRRRDADDENSDDE 247 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ ED PE + +R Y IQEVIK RQI+LVQ+VKEERGNKGAA+TTYLS Sbjct: 248 DSVESVGAEDAMEEVPE-RRQAPRRHYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLS 306 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRYSVLMPNT++G ISRKIT P DRK LK+IA L+VP GMGVILRTAGASRTK EI Sbjct: 307 LAGRYSVLMPNTARGGGISRKITQPTDRKRLKKIASELDVPEGMGVILRTAGASRTKAEI 366 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRDFEYLMRLW+ VR+L L S AP+LVYEEG+LIKR+IRDLY KDI++++V+GE+GYREA Sbjct: 367 KRDFEYLMRLWETVRDLTLQSSAPNLVYEEGSLIKRSIRDLYNKDINQVLVAGEEGYREA 426 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 KDFM++LMPS+A+ V+ Y DP P+F R G+E QLD++ +VT+ S GY++INQTEALVS Sbjct: 427 KDFMRMLMPSHAKNVQPYRDPSPLFIRFGVEPQLDAMFSPQVTMKSGGYIVINQTEALVS 486 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+ST+EH IEDTALQTNLEAAEE+ARQLRLRDLAGL+V+DFIDMEE KNNR+VE+ Sbjct: 487 IDVNSGKSTKEHNIEDTALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEENKNNRNVER 546 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 KLKE LK DRAR+QVG IS+FGLLEMSRQR+R+ VLES+T C +C G G IRS SVAL Sbjct: 547 KLKECLKNDRARIQVGRISHFGLLEMSRQRLRTGVLESSTTPCPHCNGTGMIRSVESVAL 606 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +LRSVE+ LL+ HN+I+ T + V LY+LNQKRA +VE E RF V I V + + + Sbjct: 607 HVLRSVEDNLLKGATHNLILRTSTTVALYVLNQKRAHLVELEGRFAVEIEVQADVMVNGQ 666 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 + +++G V V Sbjct: 667 HYMLDRGELVDRDRFPAPVVQYVQPDTID 695 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 81/153 (52%), Positives = 98/153 (64%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDA+H EETRVVV+R NRVEE DFE+ ++KQ++GNIYLAKVTRVEPSLQAAFV+ Sbjct: 1 MANKMLIDAAHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ + +A D Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQALLEAEAAEREQDDAADSDEKPKRRRRSRAARN 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVK 153 E + S + +ES + E + Sbjct: 121 ETKEDVVASSDDELDESTSEETTEDGEAAEASE 153 >gi|331672603|ref|ZP_08373392.1| ribonuclease E (RNase E) [Escherichia coli TA280] gi|331070246|gb|EGI41612.1| ribonuclease E (RNase E) [Escherichia coli TA280] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|293390565|ref|ZP_06634899.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951099|gb|EFE01218.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1] Length = 963 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 208/669 (31%), Positives = 329/669 (49%), Gaps = 50/669 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+++I Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 72 EIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ + Y +AK +KL+ P Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE ++++++++DR Sbjct: 311 GGDIEETALSTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE Sbjct: 371 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I VV + F + + Sbjct: 431 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMETPHFSVFRVRDG 490 Query: 572 QALVNTGHK---------VGSDSQAPSYDKNIECVWQDEALL---------PIPKSESLE 613 + + + ++ +NI+ + ++ P+P E +E Sbjct: 491 EEVNELSYNLARLHQGQDETLVAEESLISRNIDTTPAETPVVESAAVSLSIPMPAPEPVE 550 Query: 614 D--------------------IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + E++ R R + Sbjct: 551 RKEQSGPSLLIRLLAALKGLFASEPKQEEQNKKTRNNNRNSNNNRNRRNQERRNNRRNRN 610 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY------DVSIPPVSTPEMESSNS 707 + +NV+++ E + N N N + PVS +E + Sbjct: 611 DNAENVVEEQTAEKAERVESRNRNQERNAKRNRKPEVIEEVINSKASTPVSEERVEPTQR 670 Query: 708 SSDPIVKKT 716 ++K Sbjct: 671 RQRRDLRKK 679 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|331682588|ref|ZP_08383207.1| ribonuclease E (RNase E) [Escherichia coli H299] gi|331080219|gb|EGI51398.1| ribonuclease E (RNase E) [Escherichia coli H299] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|226199932|ref|ZP_03795482.1| ribonuclease E [Burkholderia pseudomallei Pakistan 9] gi|225927988|gb|EEH24025.1| ribonuclease E [Burkholderia pseudomallei Pakistan 9] Length = 776 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 197/621 (31%), Positives = 303/621 (48%), Gaps = 50/621 (8%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R IQ+ ++ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 68 KEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 127 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I ++ L+E L++P GM +I RTAG R+ E++ D YL++L Sbjct: 128 NNPRGGGVSRRIEGDERQE-LRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQL 186 Query: 272 WDNVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + + + P L+Y E +L+ RAIRD + DI EI++ + + +A+ FM ++M Sbjct: 187 WRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVM 246 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+ Sbjct: 247 PDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARA 306 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TA +TNLEAA+E+ARQLRLRDL GLIV+DFIDME K+ R VE++LK++LK Sbjct: 307 TKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKH 366 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+E+SRQR+R ++ E + C C G G+IR S AL +LR ++E Sbjct: 367 DRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQE 426 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I +V +LLN+KR I + E+RF V + ++ L + +E+ Sbjct: 427 EAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERLR 486 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A ++ ++ + + E + A P+ E+ S R Sbjct: 487 HDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQR 546 Query: 630 KR--------------------------------------------RRRRRRRRPATDHH 645 + R R R + Sbjct: 547 QSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERG 606 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN--YDVSIPPVSTPEME 703 + + +N E + P Sbjct: 607 EKAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREARG 666 Query: 704 SSNSSSDPIVKKTRW-WKRRK 723 ++ ++TR + R+ Sbjct: 667 GRDNREGREARETREAREPRE 687 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 64/107 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ ++ ++D E+ ++Q KGNIY VTR+EPSL+A FV+YG + Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF E+ Y++ R A ++++ + + G+ Sbjct: 61 RHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGN 107 >gi|163853065|ref|YP_001641108.1| ribonuclease [Methylobacterium extorquens PA1] gi|163664670|gb|ABY32037.1| ribonuclease, Rne/Rng family [Methylobacterium extorquens PA1] Length = 1049 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 286/550 (52%), Positives = 369/550 (67%), Gaps = 7/550 (1%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 348 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 407 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRKIT+ DRK LKE+ L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++VREL Sbjct: 408 SRKITSAADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELT 467 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+S AP LVYEEG+LIKRAIRDLY KD+ E++VSGE YREAKDFM++LMP +++V+ Y Sbjct: 468 LSSTAPALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPY 527 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 DP PIF R G+E QLD++ T V L S GY++IN TEALVSIDVNSGR+TREH IEDTA Sbjct: 528 RDPTPIFARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTA 587 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE---KKNNRSVEKKLKESLKKDRARVQV 456 L+TNLEAAEE+ARQ+RLRDLAGL+V+DFID K+NNR+VEK+L E+LK DRAR+QV Sbjct: 588 LKTNLEAAEEVARQVRLRDLAGLVVIDFID---MEEKRNNRAVEKRLNEALKNDRARIQV 644 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G IS FGLLEMSRQRIR+ VLES++ C +C G+G++R+ SSVAL ILRS+EE LL+ + Sbjct: 645 GRISPFGLLEMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSAS 704 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADKLFYIEKGSPVQALV 575 HN+++ T ++ LY+LNQKRA + + E RF V+I + L A F +E+G P Sbjct: 705 HNVVLRTRTETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHE 764 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 V + + +P Y+ E+ +E + E + R Sbjct: 765 GPVTGVRAVAISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGR 824 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 RRRR + + DS D + ++ + + P Sbjct: 825 RRRRRRRRGGRTAGEGEARARDEDGTDSEDGAEDGAEDGDDAPDSEPEAAEAALGAAADP 884 Query: 696 PVSTPEMESS 705 + + +++ Sbjct: 885 DETASDADAN 894 Score = 177 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 67/142 (47%), Positives = 89/142 (62%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y Sbjct: 3 NNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 GGNRHGFL F EIHPDYYQIP +DR AL++ + + + + Sbjct: 63 GGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRAEA 122 Query: 122 EVAPIANFSQETEEESIISANN 143 + + + E S + + Sbjct: 123 RGSRPDDTVKSQEAVSDAGSED 144 >gi|26247224|ref|NP_753264.1| ribonuclease E [Escherichia coli CFT073] gi|227886558|ref|ZP_04004363.1| ribonuclease E [Escherichia coli 83972] gi|300974388|ref|ZP_07172600.1| ribonuclease E [Escherichia coli MS 45-1] gi|301051129|ref|ZP_07197960.1| ribonuclease E [Escherichia coli MS 185-1] gi|26107625|gb|AAN79824.1|AE016759_98 Ribonuclease E [Escherichia coli CFT073] gi|227836762|gb|EEJ47228.1| ribonuclease E [Escherichia coli 83972] gi|300297213|gb|EFJ53598.1| ribonuclease E [Escherichia coli MS 185-1] gi|300410631|gb|EFJ94169.1| ribonuclease E [Escherichia coli MS 45-1] gi|307553086|gb|ADN45861.1| ribonuclease E [Escherichia coli ABU 83972] gi|315291062|gb|EFU50425.1| ribonuclease E [Escherichia coli MS 153-1] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|304409810|ref|ZP_07391430.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183] gi|307304166|ref|ZP_07583919.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175] gi|304352328|gb|EFM16726.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183] gi|306913064|gb|EFN43487.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175] Length = 1149 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 210/644 (32%), Positives = 317/644 (49%), Gaps = 22/644 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 28 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 88 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614 + + +K A Y+ ++A P K E+ + Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPVPALKGFAAPQKVEQAPSPTVKVEAPQP 566 Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + + + + + + ++ + +N + Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTSAANANRRNRRNDTRRPRNAQDADKAK 626 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + VS P E + P + + Sbjct: 627 EGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRPAKAEPK 670 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 80 ADRHGFLPLKEIAREYF 96 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 11/157 (7%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 V + V V + + V + + + + Sbjct: 787 KAVSSAVAETPAVDAVKTEEQAEVVTAEVAAPADAVSQDNEAVDAESETADDQAKREQRD 846 Query: 629 RKRRRRRRRR-------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN---- 677 +RR RR R R D D G + + N + Y Sbjct: 847 GQRRSRRSPRHLRAAGQRRRRDEDDQGTSTPAQFVPNDELGADQEYPSEVASVRVEAPVV 906 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + A T+ S+ +T E+ + VK Sbjct: 907 ATKTDAVAETQATAKSVEVETTQASEAPVVEAPAAVK 943 >gi|333005781|gb|EGK25299.1| ribonuclease E [Shigella flexneri K-218] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|323175684|gb|EFZ61278.1| ribonuclease E [Escherichia coli 1180] Length = 1058 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 548 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 607 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 608 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667 Query: 707 SSSDP 711 P Sbjct: 668 EQQAP 672 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|299771718|ref|YP_003733744.1| Ribonuclease E(RNase E) [Acinetobacter sp. DR1] gi|298701806|gb|ADI92371.1| Ribonuclease E(RNase E) [Acinetobacter sp. DR1] Length = 1116 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 207/570 (36%), Positives = 323/570 (56%), Gaps = 13/570 (2%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L +P GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I+ Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEIQ------ 483 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 G S + + + + + + + + +++ + + + Sbjct: 484 -YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHAAPAANNAAGQKKANQA 542 Query: 633 RRRRRRRPATDHHDAGVV--SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 + +P+T + + ++ + + + T ++ GA + Sbjct: 543 AQPSAAQPSTQKAASPLAWLENLFVQKQAKTIDQSRSAQNAAATIEQMVNTGAVSRGQFG 602 Query: 691 DVSIPPVSTPEMESSNS---SSDPIVKKTR 717 V++PPV+ SN+ S P ++ R Sbjct: 603 QVAVPPVAETVAAPSNNAYISQSPAKQEVR 632 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|170020520|ref|YP_001725474.1| ribonuclease E [Escherichia coli ATCC 8739] gi|169755448|gb|ACA78147.1| ribonuclease, Rne/Rng family [Escherichia coli ATCC 8739] Length = 1061 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|333008289|gb|EGK27763.1| ribonuclease E [Shigella flexneri K-272] gi|333019779|gb|EGK39051.1| ribonuclease E [Shigella flexneri K-227] Length = 1061 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQRTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|293409450|ref|ZP_06653026.1| rne [Escherichia coli B354] gi|291469918|gb|EFF12402.1| rne [Escherichia coli B354] Length = 1058 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|110805100|ref|YP_688620.1| ribonuclease E [Shigella flexneri 5 str. 8401] gi|110614648|gb|ABF03315.1| RNase E [Shigella flexneri 5 str. 8401] gi|333004895|gb|EGK24415.1| ribonuclease E [Shigella flexneri VA-6] Length = 1061 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|326572297|gb|EGE22292.1| ribonuclease E [Moraxella catarrhalis BC8] Length = 717 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + E Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|229513686|ref|ZP_04403148.1| ribonuclease E [Vibrio cholerae TMA 21] gi|229348867|gb|EEO13824.1| ribonuclease E [Vibrio cholerae TMA 21] Length = 1052 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 322/641 (50%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + E + R + A+ + V + + E ++ N Sbjct: 551 SQPVAEVQQPAQPGFFSRVFKAIASLFSTTPEAAKVEAPVTQNSEQDKPRRERNERNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|281178193|dbj|BAI54523.1| ribonuclease E [Escherichia coli SE15] Length = 1061 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|262276055|ref|ZP_06053864.1| ribonuclease E [Grimontia hollisae CIP 101886] gi|262219863|gb|EEY71179.1| ribonuclease E [Grimontia hollisae CIP 101886] Length = 1006 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 208/652 (31%), Positives = 324/652 (49%), Gaps = 26/652 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D S Sbjct: 9 EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDNYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE GL +P GMG+I+RTAG ++ E++ D YL+ Sbjct: 129 NNPRAGGISRRIEGEERSQ-LKEAMSGLTLPQGMGLIVRTAGVGKSAEELEWDLNYLLNN 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ ++ A + AP L+Y+E ++I RA RD +DI E+++ EK Y +A++ ++ P Sbjct: 188 WERIQGAAESKTAPFLIYQESDVIARAFRDYLRRDIGEVLIDSEKVYNQARERIQATRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FLSRVKRYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GSDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G IR S++LSILR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLSLSILRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ V YLLN+KR ++ E V + VV + F + + Sbjct: 428 LKENTAQVMAVVPVPVASYLLNEKRRSVQHVEKYHNVRVIVVPNANMETPHFEVVRIRGG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + +++ +A + + + + + + + K Sbjct: 488 DEISSLSYRLPEHLEAMRENDAKDDAPTERVVKKREEPALQGFTAPASPAPVAKPAAVKE 547 Query: 632 RRRR---------------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + ++ + + + + S D S N Sbjct: 548 EAKPGLFSRLTSFISGLFSGGKQDGKEEQEESASKRDNRNRRDSKRSQDRTRRGSRNNNG 607 Query: 677 NLLENGAHGFT--ENYDVSIPPVSTPEMES---SNSSSDPIVKKTRWWKRRK 723 E+ + E E + SS P+ K + +R++ Sbjct: 608 QREESSKNAEQYGEKKARRKERPENTERQEKAAKKSSRKPVEKTEKAEQRKQ 659 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 6/109 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y YQ + ++ L + + + + Sbjct: 61 RHGFLPLKEIAREYFPDNYSYQGRPNIKEVLKEGQEVIVQVDKEERGNK 109 >gi|104780775|ref|YP_607273.1| ribonuclease E Rne [Pseudomonas entomophila L48] gi|95109762|emb|CAK14467.1| putative ribonuclease E Rne [Pseudomonas entomophila L48] Length = 1075 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 215/616 (34%), Positives = 323/616 (52%), Gaps = 5/616 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKPPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL VP MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + + VAP L+Y+E N+I RAIRD +DI E+++ EA F++ +MP YA Sbjct: 191 AIKEASQDRVAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLR-DDN 489 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + + + ++ + + ++ + + Sbjct: 490 PDVLSSQSSYEIASTEAEEAPQPTATRTLVRQEAAVKTAPARANAPAPAVAEEPAAPAAP 549 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + P+ + + + + + + E + E +G ++ + Sbjct: 550 VQSAPEPSLFKGLVKSLVSLFAGKEEPAAAPAVNTEKPATERSSRNEERRNGRQQSRNRG 609 Query: 694 IPPVSTPEMESSNSSS 709 + + Sbjct: 610 GRRDEERKPREERNER 625 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 44/105 (41%), Positives = 64/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ P R + + + Q V + Sbjct: 62 SERHGFLPLKEISREYFKKPPEGRVNIKEVLSEGQEVIVQVEKEE 106 >gi|323175239|gb|EFZ60852.1| ribonuclease E [Escherichia coli LT-68] Length = 1061 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|49116|emb|CAA47818.1| ams [Escherichia coli K-12] Length = 1025 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVVRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|293404370|ref|ZP_06648364.1| rne [Escherichia coli FVEC1412] gi|298380150|ref|ZP_06989755.1| rne [Escherichia coli FVEC1302] gi|291428956|gb|EFF01981.1| rne [Escherichia coli FVEC1412] gi|298279848|gb|EFI21356.1| rne [Escherichia coli FVEC1302] Length = 1058 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 534 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|227013927|gb|ACP10137.1| ribonuclease E [Vibrio cholerae O395] Length = 1052 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 201/664 (30%), Positives = 316/664 (47%), Gaps = 39/664 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+T ++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTAFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608 + + + D ++ +E + P + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + ++Q + + D + Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D + N+ + P E N ++ P ++ Sbjct: 611 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 670 Query: 719 WKRR 722 RR Sbjct: 671 QDRR 674 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|171057283|ref|YP_001789632.1| ribonuclease [Leptothrix cholodnii SP-6] gi|170774728|gb|ACB32867.1| ribonuclease, Rne/Rng family [Leptothrix cholodnii SP-6] Length = 1058 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 189/513 (36%), Positives = 278/513 (54%), Gaps = 1/513 (0%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + E + D + Sbjct: 12 EERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLPFK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + R I +VI N Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISRSYFKEGVSVRDAKISDVISNGQELLVQVEKEERGNKGAALTTFVSLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +G +SR+I + LKE L+ P GM +I RTAG R+ E++ D Y+++LW Sbjct: 132 NPRGGGVSRRIEGEQREE-LKENLEQLDYPKGMSLIARTAGIGRSAEELQWDLNYMLKLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + + L+Y+E +L+ RAIRD + DI EI++ + + +A+ FM +MP Sbjct: 191 TAIDDASKGGRGAFLIYQESSLVIRAIRDYFSADIGEILIDTDDIFEQARQFMLHVMPDT 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A V++Y D P+F R IE Q+++ V LPS G ++I+ TEALV++DVNS R+TR Sbjct: 251 ANRVKRYRDDAPLFSRFQIEHQIETAFSRTVHLPSGGAIVIDHTEALVAVDVNSARATRG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA +TNLEAA+EIARQ RLRDL GLIVVDFIDMEE KN R VE +L+++L+ DRA Sbjct: 311 GDIEETATRTNLEAADEIARQCRLRDLGGLIVVDFIDMEESKNRREVETRLRDALRTDRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ +IS FGLLE+SRQR+R ++ E C C G G+IR S AL ILR ++E + Sbjct: 371 RVQFSSISKFGLLELSRQRLRPALSEGNHITCPRCNGTGHIRDTESSALQILRIIQEESM 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V +V +LLN+KR I + E + ++ +V L + +E+ Sbjct: 431 KEGTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRTTVLLVPNKHLETPNYKLERLRHDD 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 + + + P + I + +A Sbjct: 491 PRLENIQASYTMIEEPEDEVGITRREKLKAKQE 523 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y++ S R A + + + + G+ Sbjct: 62 EDRHGFLPFKEISRSYFKEGVSVRDAKISDVISNGQELLVQVEKEERGN 110 >gi|161485788|ref|NP_707000.3| ribonuclease E [Shigella flexneri 2a str. 301] gi|161486509|ref|NP_836789.2| ribonuclease E [Shigella flexneri 2a str. 2457T] gi|313650462|gb|EFS14869.1| ribonuclease E [Shigella flexneri 2a str. 2457T] gi|332759658|gb|EGJ89963.1| ribonuclease E [Shigella flexneri 2747-71] Length = 1063 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 196/665 (29%), Positives = 311/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 EE+ + + + D Sbjct: 551 VAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|320189767|gb|EFW64423.1| Ribonuclease E [Escherichia coli O157:H7 str. EC1212] Length = 1061 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSTHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|82544451|ref|YP_408398.1| ribonuclease E [Shigella boydii Sb227] gi|81245862|gb|ABB66570.1| RNase E [Shigella boydii Sb227] gi|320173537|gb|EFW48733.1| Ribonuclease E [Shigella dysenteriae CDC 74-1112] gi|320186968|gb|EFW61681.1| Ribonuclease E [Shigella flexneri CDC 796-83] gi|332094071|gb|EGI99123.1| ribonuclease E [Shigella boydii 3594-74] Length = 1061 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|90415858|ref|ZP_01223791.1| ribonuclease E [marine gamma proteobacterium HTCC2207] gi|90332232|gb|EAS47429.1| ribonuclease E [marine gamma proteobacterium HTCC2207] Length = 1008 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 213/682 (31%), Positives = 326/682 (47%), Gaps = 57/682 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I N ++ A I E S+ +A D ++ Sbjct: 12 EEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++ I+ Q + VQ+ KEERG+KGAA+TT++SLAGRY VLMP Sbjct: 72 EISREYFKGKSSDGGRVNIKDAIREGQEIFVQVEKEERGSKGAALTTFISLAGRYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I L+E RGL++P GMG I+RTAG R E++ D +YL++L Sbjct: 132 NNPRAGGISRRIEGEERAD-LREAMRGLDIPEGMGAIVRTAGIGRATEELQWDLDYLLQL 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ + A + APH +++E N+I RAIRD +D+ E+IV + Y A F+ +MP Sbjct: 191 WNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLAAAFIGTVMPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y++ P+F R IE Q+++ + EV+LPS G ++I+ TEA+VSID+NS R+T+ Sbjct: 251 FTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMVSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA TN EAAEE+ARQLRLRD+ GLIV+DFIDM ++ + VE ++E+LK DR Sbjct: 311 GGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVENTIREALKIDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQVG IS FGLLEMSRQR+R S+ E+ +K+C CKG G IR S+ALSILR +EE Sbjct: 371 ARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRSLALSILRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + + I V +LLN+KR+ I + E+R +++ V+ ++ F + + Sbjct: 431 QKEFSKEIRAIVPVSVATFLLNEKRSEIADIESRNKINVVVLPNTQMETPHFEVVRIRAQ 490 Query: 572 QALVNT-------GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI--------- 615 + H++ S ++ + E + I Sbjct: 491 DDDDSDGEFSYKLAHELSSKEPEQDLERTSAPLPISEPAVKTLVPHKPAPIMPEKAAPTA 550 Query: 616 --------------------QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + + T +K R R R + D+ Sbjct: 551 AAAVKTEKPGLLKRIWESIFGGSSTEAKKTEDEKKTRPRGSNSRRGGQNQDSRNRQGNRR 610 Query: 656 I---------------QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 N + + + +D N D V + Sbjct: 611 PNNRNRNRNRNEGRNDSNRDAEGTETQAKSADKQGQGRGRNDQSRPAAKQDTREQKVDSA 670 Query: 701 EMESSNSSSDPIVKKTRWWKRR 722 + + P + K+R Sbjct: 671 STATQTADKGPETGEGGELKKR 692 >gi|110833921|ref|YP_692780.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2] gi|110647032|emb|CAL16508.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2] Length = 1074 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 214/655 (32%), Positives = 330/655 (50%), Gaps = 31/655 (4%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+ + D E + ++ +E A A Sbjct: 11 PEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVD--------FGA 62 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++++ + PK + + I+EVIK Q ++VQ+ KEERGNKGAA+TT++S Sbjct: 63 ERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTFIS 122 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN + ISR+I + LKE L +P MGVI+RTAG R+ E+ Sbjct: 123 LAGRYLVLMPNNPRAGGISRRIEGEERAQ-LKEALGALNIPDEMGVIVRTAGLGRSAEEL 181 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D YL++LW ++ + + + AP L+Y+E N+I RAIRD KDI E+++ +K Y EA Sbjct: 182 QWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDEA 241 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F++ +M + ++ Y+D P+F R IE Q+++ + EV LPS G ++I+ TEALVS Sbjct: 242 QGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALVS 301 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NS R+T+ IE+TALQTNLEAAEEIARQLRLRD+ GLIVVDFIDM +N R VE Sbjct: 302 IDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDVEN 361 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +++++L+ DRAR+Q+G IS FGLLE+SRQR+R S+ E+++ VC C G G+IR S+AL Sbjct: 362 RMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSLAL 421 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 SILR +EE +++ I V YLLN+KR + E V + ++ L Sbjct: 422 SILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHKVRVVIIPNQNLDTP 481 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYD---KNIECVWQDEALLPIPKSESLEDIQDN 618 F +E+ Q H++ D + E + + ++ Sbjct: 482 HFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKTQEPAVRLMAPDTAPPPPKP 541 Query: 619 IVSEESTG-------------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 +V+ + K + ++ + + Sbjct: 542 VVAAPTAQVQNLGLLARLFSWLAQVFTAEPKPAKAKKDAPQRKSDNKPRQQQNNRGRGGN 601 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + N N + G G +N + + + N + + Sbjct: 602 NRNDSNNSDNRAKNDNRNKRDGGKAGDNDNRNTRNKRQNDKDSGRKNDNRQADNR 656 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 45/108 (41%), Positives = 62/108 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ R+ +LD E ++Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 RHGFLP EI Y+Q D Q + + + E + Sbjct: 62 AERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEE 109 >gi|26988635|ref|NP_744060.1| ribonuclease, Rne/Rng family [Pseudomonas putida KT2440] gi|24983416|gb|AAN67524.1|AE016381_1 ribonuclease E [Pseudomonas putida KT2440] Length = 1091 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 223/610 (36%), Positives = 320/610 (52%), Gaps = 6/610 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL VP MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ EA F++ +MP YA Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 V + S A + + L+ + + N + + Sbjct: 491 EV--LNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAP 548 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+V + S+ D+ + P+ S Sbjct: 549 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQS 608 Query: 694 IPPVSTPEME 703 + E Sbjct: 609 RNRNGRRDEE 618 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 SERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 106 >gi|281600500|gb|ADA73484.1| RNase E [Shigella flexneri 2002017] gi|332761432|gb|EGJ91716.1| ribonuclease E [Shigella flexneri K-671] Length = 1063 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|323962683|gb|EGB58261.1| rne/Rng family protein ribonuclease [Escherichia coli H489] Length = 1061 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQIETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|320196432|gb|EFW71055.1| Ribonuclease E [Escherichia coli WV_060327] Length = 1061 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|297519558|ref|ZP_06937944.1| ribonuclease E [Escherichia coli OP50] Length = 892 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|254514410|ref|ZP_05126471.1| ribonuclease E [gamma proteobacterium NOR5-3] gi|219676653|gb|EED33018.1| ribonuclease E [gamma proteobacterium NOR5-3] Length = 987 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 198/557 (35%), Positives = 292/557 (52%), Gaps = 4/557 (0%) Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 V+++ PK ++ I++V+K L+VQ+ KEERGNKGAA+TT++SL GRY V Sbjct: 70 VKEIAREYFYRDPKDIDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTFISLPGRYMV 129 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 LMPN + ISR+I + L+E L++P GMGVI+RTAG R+ E++ D YL Sbjct: 130 LMPNNPRAGGISRRIEGDDRAE-LREALSALDIPDGMGVIIRTAGVGRSAEELQWDLNYL 188 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++LW+ V + + +P L+Y+E N+I RA+RD D+ ++++ +++A DF+ ++ Sbjct: 189 LQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQAMDFVSMV 248 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 MP Y + ++ YED P+F R IE Q++S Q EV LPS G ++I+ TEALVSID+NS R Sbjct: 249 MPKYQQRIKLYEDNIPLFNRFQIESQIESAFQREVRLPSGGSIVIDPTEALVSIDINSAR 308 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +T+ IE+TALQTNLEAA+E+ARQLRLRD+ GLIV+DFIDM +N R+VE +++++L Sbjct: 309 ATKGVNIEETALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAARNQRAVETRMRDALA 368 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 DRARVQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++LSILR +E Sbjct: 369 IDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIVCPRCTGQGTIRDTKSLSLSILRLLE 428 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 E ++ + DV YLLN+KR + E E + V+ L F + + Sbjct: 429 EEAIKERTAEVRAIVPVDVAAYLLNEKRVALSEVETLTRARVLVIPNPNLETPHFEVTRL 488 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + N + P D + Sbjct: 489 RDDEVDGNQQTSYKVELAVPDADSISDAHDHTLPTQEAVVQRIAPTAAPAPAEAADDAAP 548 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 A A + + + D + + A E Sbjct: 549 AAATA---AAATAVAATAAVTAKPGLAQRLWVSFFGDPNASEEPAEVVSSESDKAEKAPE 605 Query: 689 NYDVSIPPVSTPEMESS 705 + + S Sbjct: 606 ESQADTQAADDDKPKRS 622 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KMLI+A+H EE RV ++ ++ +LD E+ + Q K NIY+ K+TRVEPSL+AAFVD+G Sbjct: 2 KKMLINATHPEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFL EI +Y+ Sbjct: 62 AERHGFLSVKEIAREYF 78 >gi|212635835|ref|YP_002312360.1| ribonuclease E [Shewanella piezotolerans WP3] gi|212557319|gb|ACJ29773.1| Ribonuclease E [Shewanella piezotolerans WP3] Length = 1119 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 209/660 (31%), Positives = 329/660 (49%), Gaps = 43/660 (6%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I + E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+K Q +++QI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK L++P GMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAALSELDIPQGMGLIVRTAGVGKDPAELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W ++E A ++ AP L+++E N+I RAIRD +D+ EI++ + Y +AK+ + L+ Sbjct: 189 HHWAAIKEAAESAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + +++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERIKRYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VEK++++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEERHNVEVYVIPDPNMTTPDYRVVRHR 488 Query: 570 PVQALVNTGHKVGSDSQAP--------------------SYDKNIECVWQDEALLPIPKS 609 + + +K+ +A S K + V + P + Sbjct: 489 KDDQISESSYKLLEQEEAKLYEPRKLERAAPPQPALKGFSSPKKVAPVEVETKPAPAKAA 548 Query: 610 ES-----------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 E E + ++ + + R RR D Sbjct: 549 EPGLFAKIAAAISSLFASNEEPKVEPKQQDKGSRNGQSRNNNRRNNNRRNDPRRNRSEGR 608 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + + + ++ +N + +N + E++N +++P Sbjct: 609 NEGRNENRNGNEQNKDKRNKSNRNDANDNRSKAQDDNKRPQRNEKPRKQAEANNENAEPK 668 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY +TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 62 ADRHGFLPLKEIAREYF 78 >gi|331652137|ref|ZP_08353156.1| ribonuclease E (RNase E) [Escherichia coli M718] gi|331050415|gb|EGI22473.1| ribonuclease E (RNase E) [Escherichia coli M718] Length = 1061 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 295/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQAAPKVEAKPERQQDRRK 610 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|229524039|ref|ZP_04413444.1| ribonuclease E [Vibrio cholerae bv. albensis VL426] gi|229337620|gb|EEO02637.1| ribonuclease E [Vibrio cholerae bv. albensis VL426] Length = 1052 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 320/641 (49%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEE G+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEEHGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E + R + A+ + V + + E +D N Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SN++ P +K + Sbjct: 611 RRNPRDKNRRRGNEENNERNDK---ETSNNNRKPQERKPKQ 648 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|300902475|ref|ZP_07120457.1| ribonuclease E [Escherichia coli MS 84-1] gi|301304977|ref|ZP_07211079.1| ribonuclease E [Escherichia coli MS 124-1] gi|300405507|gb|EFJ89045.1| ribonuclease E [Escherichia coli MS 84-1] gi|300839695|gb|EFK67455.1| ribonuclease E [Escherichia coli MS 124-1] gi|315253885|gb|EFU33853.1| ribonuclease E [Escherichia coli MS 85-1] Length = 1061 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|292493394|ref|YP_003528833.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4] gi|291581989|gb|ADE16446.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4] Length = 785 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 212/635 (33%), Positives = 317/635 (49%), Gaps = 27/635 (4%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------V 149 A+ A+ D D+ I N ++ A + E S+ + D ++ + Sbjct: 11 AEELRVAMVDGQHLQDLDIENPAREQKKANVYKGKITRIEPSLEAVFVDYGADRQGFLPL 70 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 ++V G + + + +QEV+K Q LLVQ+ KEERGNKGAA++T++SLAGRY VL Sbjct: 71 KEVARGYFQPHQGEPGERLKVQEVLKEGQELLVQVEKEERGNKGAALSTFVSLAGRYLVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + +SR+I L E R LEVP GMG+I RTA ++ E++ D YL+ Sbjct: 131 MPNNPRAGGVSRRIEGEERS-ALLEAMRALEVPEGMGLIARTAALGKSTEELQWDLNYLL 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 LW ++ A AP L+Y+E ++I RA+RD D+ EI++ Y+ A DFM+ +M Sbjct: 190 HLWQAIQVAAQERPAPFLIYQESDVIIRALRDYLRLDVGEILIDTPDVYQRAYDFMRQVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + ++ Y+D +F R IE Q+++ Q EV LPS G ++I+ TEAL +ID+NS R+ Sbjct: 250 PHELQKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVIDYTEALTTIDINSARA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + IE+TAL TNLE+AEEIARQL+LRDL GLIV+DFIDM +N R+VE +L+E L++ Sbjct: 310 NKGEDIEETALSTNLESAEEIARQLKLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLRE 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E+ VC C G G++R S+ LS+LR VEE Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCSGRGHVRGVESLGLSVLRLVEE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK-- 567 + ++V V +LLN+KR + E R+ V + +V L F IE+ Sbjct: 430 GAAKEKTARMVVQLPISVASFLLNEKRTNLATIEKRYEVHLFLVPNPHLETPAFKIERVK 489 Query: 568 ------GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 G + L +++ ++ ++ + V D+ L+ Sbjct: 490 DKGKEEGRTDKRLEMQSYQMANEPESKNLVFAAPSVAPDQPLVKGVSPSLPPPGPKPAAP 549 Query: 622 EEST------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 G + A + V+S + Sbjct: 550 AAQPHFLRHFWKVLIGGEQEPEAPEVSNQETAATPGEPSRQERVASRRGRSHGRGRRSSG 609 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 N + + T E + Sbjct: 610 RRQNRRENTQSKEVSPEVGSVQPAPEVKETQERQK 644 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ +++LD E+ ++Q K N+Y K+TR+EPSL+A FVDYG Sbjct: 2 KRMLINATHAEELRVAMVDGQHLQDLDIENPAREQKKANVYKGKITRIEPSLEAVFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPF-SDRQALL-KESNIAQTDSEAVADDVTHGD 111 +R GFLP E+ Y+Q + L +E + + G+ Sbjct: 62 ADRQGFLPLKEVARGYFQPHQGEPGERLKVQEVLKEGQELLVQVEKEERGN 112 >gi|258648379|ref|ZP_05735848.1| ribonuclease G [Prevotella tannerae ATCC 51259] gi|260851549|gb|EEX71418.1| ribonuclease G [Prevotella tannerae ATCC 51259] Length = 529 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 147/570 (25%), Positives = 251/570 (44%), Gaps = 67/570 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++++ +E + +L D R+ E E + + GNIYLAKV ++ P L A FV+ Sbjct: 1 MTSEVIVNV-QPKEISIALLEDKRLVEFQQEGKEESFSVGNIYLAKVKKIMPGLNACFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +L++ Y F L+++ + L Sbjct: 60 VGHERDAFLHYLDLGIHYRS--FEKYLQLIQDGKKGNLPLTKAS-----------GQSDL 106 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ I N ++ +E + A + + L Sbjct: 107 EKDGSIQNTLKQGQEVLVQIAKEPISTK----------------------------GPRL 138 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I S AGR+ VL+P K ++ + + + Sbjct: 139 TCEI----------------SFAGRFIVLIPFCDKISVSTKIKSAQERAR--LKQLISSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH------LVYEEGNL 294 P G G I+RT + E+ + + L++ W + + A L YEE + Sbjct: 181 KPKGFGCIIRTVAEGKRVAELDLELKTLLKRWTDAIAKIQKNKALTQPKFPLLCYEETSR 240 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 +RDL+ I V E Y++ +D+++L+ P +IV+ Y+ PIF + Q Sbjct: 241 TVALLRDLFNPSYENIYVDDESVYKDVQDYVRLIAPDRQQIVKLYKGKVPIFDNFSVTKQ 300 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQ 413 + + +T Y+II TEAL +DVNSG RS E AL NL AA+E+ARQ Sbjct: 301 IKTSFGRTITYKHGAYLIIEHTEALHVVDVNSGNRSKSPEGQEVNALDVNLGAADELARQ 360 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLRD+ G+IVVDFIDM +N + + +++ E++KKDRAR + +S FGL++++RQR+R Sbjct: 361 LRLRDMGGIIVVDFIDMNLAENRQKLYERMVENMKKDRARHNILPLSKFGLMQITRQRVR 420 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 ++ + C C G G I+S ++ ++ + I +H H V YL Sbjct: 421 PAMDVKVEESCPTCGGTGKIKSSLLFTDALEGKIQMLADKLNYRKIRLHVHPFVAAYLDK 480 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLF 563 + +++ R ++I V+ +L+ + Sbjct: 481 GLLSLRRKWQLRHKINIQVIPNQKLSYLQY 510 >gi|191168483|ref|ZP_03030271.1| ribonuclease E [Escherichia coli B7A] gi|193069439|ref|ZP_03050393.1| ribonuclease E [Escherichia coli E110019] gi|256018659|ref|ZP_05432524.1| ribonuclease E [Shigella sp. D9] gi|260854567|ref|YP_003228458.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli O26:H11 str. 11368] gi|260867447|ref|YP_003233849.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli O111:H- str. 11128] gi|293433374|ref|ZP_06661802.1| rne [Escherichia coli B088] gi|300816786|ref|ZP_07097006.1| ribonuclease E [Escherichia coli MS 107-1] gi|332279728|ref|ZP_08392141.1| ribonuclease E [Shigella sp. D9] gi|190901502|gb|EDV61263.1| ribonuclease E [Escherichia coli B7A] gi|192957187|gb|EDV87636.1| ribonuclease E [Escherichia coli E110019] gi|257753216|dbj|BAI24718.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli O26:H11 str. 11368] gi|257763803|dbj|BAI35298.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein [Escherichia coli O111:H- str. 11128] gi|291324193|gb|EFE63615.1| rne [Escherichia coli B088] gi|300530560|gb|EFK51622.1| ribonuclease E [Escherichia coli MS 107-1] gi|323156891|gb|EFZ43025.1| ribonuclease E [Escherichia coli EPECa14] gi|323185793|gb|EFZ71154.1| ribonuclease E [Escherichia coli 1357] gi|324117345|gb|EGC11252.1| rne/Rng family protein ribonuclease [Escherichia coli E1167] gi|332102080|gb|EGJ05426.1| ribonuclease E [Shigella sp. D9] Length = 1061 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|15801201|ref|NP_287218.1| ribonuclease E [Escherichia coli O157:H7 EDL933] gi|15830716|ref|NP_309489.1| ribonuclease E [Escherichia coli O157:H7 str. Sakai] gi|168767743|ref|ZP_02792750.1| ribonuclease E [Escherichia coli O157:H7 str. EC4486] gi|168783614|ref|ZP_02808621.1| ribonuclease E [Escherichia coli O157:H7 str. EC4076] gi|168790019|ref|ZP_02815026.1| ribonuclease E [Escherichia coli O157:H7 str. EC869] gi|195935474|ref|ZP_03080856.1| ribonuclease E [Escherichia coli O157:H7 str. EC4024] gi|208805839|ref|ZP_03248176.1| ribonuclease E [Escherichia coli O157:H7 str. EC4206] gi|208815535|ref|ZP_03256714.1| ribonuclease E [Escherichia coli O157:H7 str. EC4045] gi|208822046|ref|ZP_03262365.1| ribonuclease E [Escherichia coli O157:H7 str. EC4042] gi|209400957|ref|YP_002269930.1| ribonuclease E [Escherichia coli O157:H7 str. EC4115] gi|217328065|ref|ZP_03444147.1| ribonuclease E [Escherichia coli O157:H7 str. TW14588] gi|254792466|ref|YP_003077303.1| ribonuclease E [Escherichia coli O157:H7 str. TW14359] gi|261227011|ref|ZP_05941292.1| ribonuclease E [Escherichia coli O157:H7 str. FRIK2000] gi|261256245|ref|ZP_05948778.1| ribonuclease E [Escherichia coli O157:H7 str. FRIK966] gi|291282104|ref|YP_003498922.1| Ribonuclease, Rne/Rng family [Escherichia coli O55:H7 str. CB9615] gi|12514625|gb|AAG55830.1|AE005318_7 RNase E, membrane attachment, mRNA turnover, maturation 5S RNA [Escherichia coli O157:H7 str. EDL933] gi|13360926|dbj|BAB34885.1| RNase E [Escherichia coli O157:H7 str. Sakai] gi|188999086|gb|EDU68072.1| ribonuclease E [Escherichia coli O157:H7 str. EC4076] gi|189363122|gb|EDU81541.1| ribonuclease E [Escherichia coli O157:H7 str. EC4486] gi|189370502|gb|EDU88918.1| ribonuclease E [Escherichia coli O157:H7 str. EC869] gi|208725640|gb|EDZ75241.1| ribonuclease E [Escherichia coli O157:H7 str. EC4206] gi|208732183|gb|EDZ80871.1| ribonuclease E [Escherichia coli O157:H7 str. EC4045] gi|208737531|gb|EDZ85214.1| ribonuclease E [Escherichia coli O157:H7 str. EC4042] gi|209162357|gb|ACI39790.1| ribonuclease E [Escherichia coli O157:H7 str. EC4115] gi|209773298|gb|ACI84961.1| RNase E [Escherichia coli] gi|209773300|gb|ACI84962.1| RNase E [Escherichia coli] gi|209773302|gb|ACI84963.1| RNase E [Escherichia coli] gi|209773304|gb|ACI84964.1| RNase E [Escherichia coli] gi|209773306|gb|ACI84965.1| RNase E [Escherichia coli] gi|217318492|gb|EEC26918.1| ribonuclease E [Escherichia coli O157:H7 str. TW14588] gi|254591866|gb|ACT71227.1| RNase E [Escherichia coli O157:H7 str. TW14359] gi|290761977|gb|ADD55938.1| Ribonuclease, Rne/Rng family [Escherichia coli O55:H7 str. CB9615] gi|320637535|gb|EFX07335.1| ribonuclease E [Escherichia coli O157:H7 str. G5101] gi|320643096|gb|EFX12297.1| ribonuclease E [Escherichia coli O157:H- str. 493-89] gi|320648554|gb|EFX17209.1| ribonuclease E [Escherichia coli O157:H- str. H 2687] gi|320653868|gb|EFX21942.1| ribonuclease E [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659348|gb|EFX26917.1| ribonuclease E [Escherichia coli O55:H7 str. USDA 5905] gi|320664483|gb|EFX31634.1| ribonuclease E [Escherichia coli O157:H7 str. LSU-61] gi|326339306|gb|EGD63120.1| Ribonuclease E [Escherichia coli O157:H7 str. 1125] gi|326344733|gb|EGD68481.1| Ribonuclease E [Escherichia coli O157:H7 str. 1044] Length = 1061 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|157159193|ref|YP_001462318.1| ribonuclease E [Escherichia coli E24377A] gi|300922610|ref|ZP_07138710.1| ribonuclease E [Escherichia coli MS 182-1] gi|301328546|ref|ZP_07221607.1| ribonuclease E [Escherichia coli MS 78-1] gi|157081223|gb|ABV20931.1| ribonuclease E [Escherichia coli E24377A] gi|300421087|gb|EFK04398.1| ribonuclease E [Escherichia coli MS 182-1] gi|300844938|gb|EFK72698.1| ribonuclease E [Escherichia coli MS 78-1] Length = 1061 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|313499942|gb|ADR61308.1| Ribonuclease [Pseudomonas putida BIRD-1] Length = 1095 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 223/610 (36%), Positives = 320/610 (52%), Gaps = 6/610 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL VP MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ EA F++ +MP YA Sbjct: 188 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E L+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 V + S A + + L+ + + N + + Sbjct: 488 EV--LNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAP 545 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+V + S+ D+ + P+ S Sbjct: 546 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVPAAEKPAAERSPRNEERRNGRQQS 605 Query: 694 IPPVSTPEME 703 + E Sbjct: 606 RNRNGRRDEE 615 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 43/103 (41%), Positives = 62/103 (60%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 103 >gi|293414378|ref|ZP_06657027.1| rne [Escherichia coli B185] gi|291434436|gb|EFF07409.1| rne [Escherichia coli B185] Length = 1061 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|218549188|ref|YP_002382979.1| ribonuclease E [Escherichia fergusonii ATCC 35469] gi|218356729|emb|CAQ89357.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Escherichia fergusonii ATCC 35469] Length = 1059 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 197/682 (28%), Positives = 315/682 (46%), Gaps = 65/682 (9%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQA----PSYDKNIECVWQDEALLPI------------------- 606 + + + + PS +++ E ++ L Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEESPERKRPEQPALATFAMPDVPPVPPAPAEPVVK 550 Query: 607 ----------------------------------PKSESLEDIQDNIVSEESTGVIRKRR 632 ++ E + R++ Sbjct: 551 AAPAPKAAEPAATPAQPGLLSRFFAALKSIFSGSDDAKPAEQPAPKAAEKPERQQDRRKP 610 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 R+ RR ++ S + + N + + + Sbjct: 611 RQNTRRDRNERRDTRSERTENSDNREENRRNRRQAQGAESRDNRQQVNDIEKTKPTDEQQ 670 Query: 693 SIPPVSTPEMESSNSSSDPIVK 714 + + + VK Sbjct: 671 TPRRERSRRRNDDKRQAQAEVK 692 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|229592116|ref|YP_002874235.1| putative ribonuclease E [Pseudomonas fluorescens SBW25] gi|229363982|emb|CAY51521.1| putative ribonuclease E [Pseudomonas fluorescens SBW25] Length = 1075 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 214/527 (40%), Positives = 308/527 (58%), Gaps = 4/527 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 28 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 88 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 266 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E L+ DRAR Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 386 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 387 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 506 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++G + A + + ++ L+ + + N Sbjct: 507 EAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAP 553 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 18 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 78 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122 >gi|331667485|ref|ZP_08368349.1| ribonuclease E (RNase E) [Escherichia coli TA271] gi|331065070|gb|EGI36965.1| ribonuclease E (RNase E) [Escherichia coli TA271] Length = 1058 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 188 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 247 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 248 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 307 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 308 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 367 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 368 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 427 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 428 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 487 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 488 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 547 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 548 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 607 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 608 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 667 Query: 707 SSSDP 711 P Sbjct: 668 EQQAP 672 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|126173939|ref|YP_001050088.1| ribonuclease [Shewanella baltica OS155] gi|125997144|gb|ABN61219.1| RNAse E [Shewanella baltica OS155] Length = 1144 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 212/648 (32%), Positives = 319/648 (49%), Gaps = 22/648 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 28 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 88 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614 + + +K A Y+ ++A P K E+ + Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + + + + + T D + + D + +D Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTSAANANRRNR-RNDTRRPRNAQDADKA 625 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + + D ++ + + K R + Sbjct: 626 KEGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRQPKPRVQAPK 673 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 80 ADRHGFLPLKEIAREYF 96 >gi|88705137|ref|ZP_01102849.1| ribonuclease E [Congregibacter litoralis KT71] gi|88700832|gb|EAQ97939.1| ribonuclease E [Congregibacter litoralis KT71] Length = 1003 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 205/550 (37%), Positives = 307/550 (55%), Gaps = 7/550 (1%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + +L + A+ A+ D D+ I N L++ A I E S+ +A D Sbjct: 2 KKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61 Query: 147 SN------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 + V+++ PK ++ I++V+K L+VQ+ KEERGNKGAA+TT++ Sbjct: 62 AERHGFLSVKEIAREYFYRNPKDVDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTFI 121 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SL GRY VLMPN + ISR+I + L+E L++P GMGVI+RTAG R+ E Sbjct: 122 SLPGRYMVLMPNNPRAGGISRRIEGDDRAE-LREALSALDIPDGMGVIIRTAGVGRSAEE 180 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 ++ D YL++LW+ V + + +P L+Y+E N+I RA+RD D+ ++++ +++ Sbjct: 181 LQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQ 240 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 A DF+ ++MP Y + ++ YED P+F R IE Q+++ Q EV LPS G ++I+ TEALV Sbjct: 241 AMDFVSMVMPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALV 300 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 SID+NS R+T+ IE TALQTNLEAA+E+ARQLRLRD+ GLIV+DFIDM KN R+VE Sbjct: 301 SIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAVE 360 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 +++++L DRARVQVG IS FGLLEMSRQR+R S+ E++ +C C G G IR S++ Sbjct: 361 NRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKSLS 420 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 LSILR +EE ++ + DV YLLN+KR + E E+ V + V+ L Sbjct: 421 LSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVESLTRVRVLVIPNPNLET 480 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 F + + + + + P D + Sbjct: 481 PHFEVTRLRDDEVEGDQQTSYKVEIAVPDADSISDSHDHSLPTQEAVVQRIAPTAAPAPT 540 Query: 621 SEESTGVIRK 630 + + Sbjct: 541 AVADSEATEP 550 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KMLI+A+H EE RV ++ ++ +LD E+ + Q K NIY+ K+TRVEPSL+AAFVD+G Sbjct: 2 KKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFL EI +Y+ Sbjct: 62 AERHGFLSVKEIAREYF 78 >gi|113460860|ref|YP_718927.1| ribonuclease E [Haemophilus somnus 129PT] gi|112822903|gb|ABI24992.1| RNAse E [Haemophilus somnus 129PT] Length = 942 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 191/560 (34%), Positives = 299/560 (53%), Gaps = 2/560 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 ++ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MPN + ISR+I Sbjct: 84 YQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI 143 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + LKE L+VP G+G+I+RTAG ++ E++ D + L+ W+ +++ + + Sbjct: 144 EGDERLE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP 202 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+++E ++I RAIRD +DI EI++ K Y +AK +KL+ P + V+ Y+ Sbjct: 203 APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEV 262 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR IE+TAL TN Sbjct: 263 PLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDINSARSTRGGDIEETALNTN 322 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E++++DRAR+Q+ IS FG Sbjct: 323 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRFG 382 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 LLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE L+ + Sbjct: 383 LLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEALKENTKQVHTIV 442 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 + YLLN+KR I E R V I V + F + + + + + + Sbjct: 443 PVQIASYLLNEKRKAIHSIEKRHNVDIVVAPNEAMETPHFSVFRVREGEEINELSYNLAK 502 Query: 584 DSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 + +E + ES + ++ E+ + + R++ R Sbjct: 503 LHEMNDETYVVEDAFISRHLENSAATVESAVENAAVSLAIETPAPMPQERKQERESLLRR 562 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 + +S +N + + + + E+ S Sbjct: 563 IIEGIKNLFADNSSKNKKNKNTRQNKNARHNRRNQDRRSSRRIRQEHEIKSDENNKLDTQ 622 Query: 703 ESSNSSSDPIVKKTRWWKRR 722 S + K + Sbjct: 623 HSHYTERYSKHAKKGVDDPQ 642 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ +Q K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 VERHGFLPLKEIAREYF 78 >gi|42525174|ref|NP_970554.1| ribonuclease G [Bdellovibrio bacteriovorus HD100] gi|39577385|emb|CAE81208.1| ribonuclease G [Bdellovibrio bacteriovorus HD100] Length = 505 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 166/567 (29%), Positives = 284/567 (50%), Gaps = 67/567 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ +ETRV + + +L E + + G+I+ V RV P +QAAFV Sbjct: 1 MSAEILINV-RPQETRVAYVDGGILTDLKIERKTSPTLVGSIHRGTVIRVLPGMQAAFV- 58 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +I + + V D D + Sbjct: 59 ------------DIG-------------------LEKAAFLYVGDIREDVDDNFLSAVDR 87 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 EE + P + IQ+++K Q + Sbjct: 88 EEPLDEGDDD-----------------------------KPLSHASKTPIQDLVKEGQSI 118 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ K+ G KGA +TT+LSL GR+ V +P ISR+I + +R+ L+++ + + Sbjct: 119 LVQVSKDPLGTKGARLTTHLSLPGRFVVFLPTVRHLG-ISRRIEDEGERERLRKLVQKIN 177 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RTAG ++ +K D EYL RL + + P ++ E ++ RA+R Sbjct: 178 PS--GGVIVRTAGDGASEEMLKADIEYLDRLSKEIFKNYEKKKTPGTLHTELDVELRALR 235 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL +D++ + V + +++ F+ MP Y + + YE+ P+F I++++ + Sbjct: 236 DLMSEDVTSVWVDDVEIHKKVVKFVSQFMPKYKQNIVLYEEKKPLFDLYDIDIEISRSME 295 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L S GY++I++ EALV IDVN+G+ + +EDT L+TNLEA E A QLR+R+ Sbjct: 296 RKIWLKSGGYIVIDEAEALVVIDVNTGKFVGKKDLEDTILKTNLEAVRETAHQLRVRNCG 355 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ + V + L E L +DRAR + ++S GL+EM+R+RIR S++++ Sbjct: 356 GIIIIDFIDMEKESHREKVLEALAEELARDRARTNIVSMSQLGLVEMTRKRIRPSLIKTL 415 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYL--LQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + C+YC+G GYI+ +S+VA I R +E L N+++H HS+VV ++ + + Sbjct: 416 CEPCSYCEGKGYIKRKSTVANEIFRELERDADMLINKKTNVVIHCHSEVVDWIYEVEGES 475 Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565 + E + G S+ I + + I Sbjct: 476 LEGIEKKLGRSVAFKIEPNYHLEQYEI 502 >gi|218709010|ref|YP_002416631.1| ribonuclease E [Vibrio splendidus LGP32] gi|218322029|emb|CAV18067.1| ribonuclease E [Vibrio splendidus LGP32] Length = 1041 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 201/667 (30%), Positives = 322/667 (48%), Gaps = 42/667 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV++ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ + A+ ++L+ P Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQ-------DEA-----LLPIPKSESLEDIQDNI 619 + + + + +A ++ E Q +E P + + + + Sbjct: 491 EEFDLLSYLLPTKLEALKEAESKEPAEQTIRPKKIEEPALKGFAAPAQSAPTPAPVPKAV 550 Query: 620 VSEESTGVIRKRRR------------------------RRRRRRPATDHHDAGVVSDVSS 655 +++ + ++ ++ + G Sbjct: 551 EEKKAESAATQEPGLVGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNRNNGNRQRRDR 610 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 N + E N EN + P E + K+ Sbjct: 611 NDNRRRNQRGDRGEQRGERGDNRNENRDNKRRRKPVRDEKPEEQKETAPQQNRQPRKPKQ 670 Query: 716 TRWWKRR 722 R K R Sbjct: 671 DRRNKPR 677 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 109 Score = 38.0 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 38/155 (24%), Gaps = 16/155 (10%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + T + + P D+ + + + + S+ E+ ++ Sbjct: 647 RDEKPEEQKETAPQQNRQPRKPKQDRRNKPRDEQKQREELAPSKLAEEGLQLAAEAQADK 706 Query: 627 --------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + +R+RR+ ++ A + S + Sbjct: 707 LEAPKAKPEAKAAKIKERRQRRKLNKQVRIKDQQAEAAENSS--NESAVAKEQSIAKEQS 764 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 + + N D + + S Sbjct: 765 VAQEQKVAEQVEATQANADEQTEQEEPKQRRNRRS 799 >gi|89900509|ref|YP_522980.1| ribonuclease [Rhodoferax ferrireducens T118] gi|89345246|gb|ABD69449.1| RNAse E [Rhodoferax ferrireducens T118] Length = 1007 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 191/512 (37%), Positives = 281/512 (54%), Gaps = 2/512 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QAEERRLAIVDGQKLLDYEIEIEGCEQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + P Q IQ+ I+ Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISRQYFQPGVAVGQARIQDAIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGEDRAD-LKEALDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A + L+Y+E +L+ RAIRD + DI +I++ + + +A+ FM +MP Sbjct: 189 LWAAIDGAAKGAKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDVFDQAQQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHADRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAAEE+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L++SL++D Sbjct: 309 KGSDIEETATRTNLEAAEEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENRLRDSLRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ IS FGL+EMSRQR+R ++ E + C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFATISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ +++ +V +LLN+KRA I + E + +++ +V L + +E+ Sbjct: 429 SLKDNTASVLCQVPVEVASFLLNEKRAEIAKIELKQRINVLMVPNKTLETPNYKLERLKH 488 Query: 571 VQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 L N Q + Sbjct: 489 DDPRLDNIESSYKLADQMEDATAVTRRSQEPT 520 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 66/109 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E +Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQAEERRLAIVDGQKLLDYEIEIEGCEQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+Q + QA ++++ + + G+ Sbjct: 62 EDRHGFLPFKEISRQYFQPGVAVGQARIQDAIREGQELLVQVEKEERGN 110 >gi|218704494|ref|YP_002412013.1| ribonuclease E [Escherichia coli UMN026] gi|300899605|ref|ZP_07117844.1| ribonuclease E [Escherichia coli MS 198-1] gi|218431591|emb|CAR12470.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA degradosome binding protein [Escherichia coli UMN026] gi|300356876|gb|EFJ72746.1| ribonuclease E [Escherichia coli MS 198-1] Length = 1061 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|319787309|ref|YP_004146784.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1] gi|317465821|gb|ADV27553.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1] Length = 1089 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 201/535 (37%), Positives = 297/535 (55%), Gaps = 5/535 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED--- 151 A+ A+ D T D+ I ++ + I E S+ +A + + Sbjct: 10 QAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGAERHGFLP 69 Query: 152 -VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + I+E+++ Q ++VQ+ K+ERGNKGAA+TT++SLAGRY VLM Sbjct: 70 LKEISRDYFQAGVDPNKAGIRELLREGQEVVVQVDKDERGNKGAALTTFISLAGRYMVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN+ +SR+I + LK L +P MGVI+RTAG R E++ D +YL+ Sbjct: 130 PNSPTPGGVSRRIEGEDRAE-LKRAMDALNIPDDMGVIIRTAGVGRDAEELQWDLDYLLA 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W V E AL+ AP L+Y+E LI RA+RD DI EI+V E+ Y +A+ FM+ +MP Sbjct: 189 AWRAVAEAALSKPAPFLIYQESRLIIRALRDYLRADIGEILVDTEEMYNDARQFMEQVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 R ++ Y D P+F R IE Q+++ ++ V LPS G ++I+QTEAL +IDVNS R+T Sbjct: 249 QSLRKLKHYTDDIPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAIDVNSARAT 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA QTNLEAAEE+ARQLRLRDL GL+V+DFIDM K+ R+VE +L+ +LK D Sbjct: 309 KGGDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSSKHQRAVEDRLQNALKYD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ+G IS FGLLEMSRQR+R+S+ ES+ VC C+G G +RS S++LSI+R EE+ Sbjct: 369 RARVQIGRISRFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSIESLSLSIIRVAEEH 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ ++V ++ +LLN+KR + E E R I +V +L + + + Sbjct: 429 AMKENTGQVLVQAPVEIANFLLNEKRGALREIEQRHDAPIIIVADEQLQTPHYEVTRLRE 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + + Q P + + E Sbjct: 489 NELGEESNRPSYQRGTPRKLPVHALTKAQLNIPPPPAVTRVAPPRPAPVREEREE 543 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + ++D E K+Q K NIY ++TR+EPSL+AAFV+YG Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI DY+Q +A ++E + D G+ Sbjct: 62 AERHGFLPLKEISRDYFQAGVDPNKAGIRELLREGQEVVVQVDKDERGN 110 >gi|222032837|emb|CAP75576.1| ribonuclease E [Escherichia coli LF82] gi|312945646|gb|ADR26473.1| ribonuclease E [Escherichia coli O83:H1 str. NRG 857C] Length = 1061 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 188/600 (31%), Positives = 296/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + T + Sbjct: 551 VAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|187730344|ref|YP_001880747.1| ribonuclease E [Shigella boydii CDC 3083-94] gi|187427336|gb|ACD06610.1| ribonuclease E [Shigella boydii CDC 3083-94] Length = 1061 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALANLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|161503727|ref|YP_001570839.1| ribonuclease E [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865074|gb|ABX21697.1| hypothetical protein SARI_01812 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1069 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 189/627 (30%), Positives = 307/627 (48%), Gaps = 10/627 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSADALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + P + + + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERK--RPEQPALATFAMPEVPPAPTPAEPTV 548 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + A G+ S + + + + Sbjct: 549 NVATAKNANVAAAQPAQPGLFSRFLNALKQLFSGDEETKTVEKAAPKVEEKPERQQDRRK 608 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 + ++ ++ ++ ++ Sbjct: 609 PRQNNRRDRNERRDTRDNRAERDGSES 635 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|119945868|ref|YP_943548.1| ribonuclease, Rne/Rng family protein [Psychromonas ingrahamii 37] gi|119864472|gb|ABM03949.1| RNAse E [Psychromonas ingrahamii 37] Length = 1065 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 209/627 (33%), Positives = 319/627 (50%), Gaps = 18/627 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 A+ A+ D D+ I + ++ A I E S+ +A + + Sbjct: 10 QAEELRVALVDGQMLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVEYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + FK + I++VIK Q +++QI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIARTYFPEGYSFKGRPNIKDVIKEGQEVIIQIEKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE L++P GMG+I+RTAG +T E++ D L+ Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEALSHLKLPNGMGLIVRTAGVGKTPEELEWDLNVLV 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A AP L++ E N+I R+IRD +DI EI++ K + AK+ + ++ Sbjct: 189 NHWQAIDEAARAQPAPFLIHRESNVIVRSIRDYLRRDIGEIVIDHAKTFELAKNHIAMVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P Y ++ Y+ P+F +E Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDYVSRLKLYQGEVPLFTHYQVESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TR IE+TA TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +++ES+++ Sbjct: 309 TRGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPPRHQREVENRMRESVRQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGL+EMSRQR+R S+ ES ++VC C G G IR S+AL+ILR +EE Sbjct: 369 DRARIQLGRISRFGLMEMSRQRLRPSLGESASRVCPRCHGQGTIRDNESLALAILRLIEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 L+ I V YLLN+KR + + E R + ++ L F I++ Sbjct: 429 EGLKENTVQIQATVPVAVAAYLLNEKRKDVQKIEKRHSCEVYIIPNANLLTPHFEIKRTR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + I+ +EA + + S + Sbjct: 489 K-DGKEDINYDALEKQHTVYVPNVIKDEHNNEA----------DPVLSGFSSPKQKTTEE 537 Query: 630 KRRRRRRRRRPAT-DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K ++ P T + + S + S + + + + + + + E + Sbjct: 538 KTVKKEIIPEPKTVEAAKPSLFSKIISAISSLFNDSEKQLPVEEKEAPPVAEPVTNNRNN 597 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + E S ++ P K Sbjct: 598 RNNSRNRNRNQNRAEKSRTTQAPTEAK 624 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 52/77 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD ES +Q K NIY K+TRVEPSL+AAFV+YG Sbjct: 2 KRMLINATQAEELRVALVDGQMLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 62 AERHGFLPLKEIARTYF 78 >gi|330962633|gb|EGH62893.1| ribonuclease E [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1101 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 223/675 (33%), Positives = 323/675 (47%), Gaps = 59/675 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + E V Sbjct: 488 EAHNNQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAEPVATP 547 Query: 601 EA----------------------LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 P + + + + +++ R R Sbjct: 548 APVVHEPSLFKGLVKSLVSLFASKEEPAAPVVVEKPVAEQRPARNEERRNGRQQSRGRNN 607 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R + + E + E+ P Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPAR 667 Query: 699 TPEMESSNSSSDPIV 713 T + + Sbjct: 668 TSRERKPREAREDRP 682 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|324017412|gb|EGB86631.1| ribonuclease E [Escherichia coli MS 117-3] Length = 1061 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 187/600 (31%), Positives = 294/600 (49%), Gaps = 8/600 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + E + + + Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPPPADPAAPV 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + G++S + + + Sbjct: 551 VAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEAKPERQQDRRK 610 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|284920909|emb|CBG33972.1| ribonuclease E [Escherichia coli 042] Length = 1061 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|37679450|ref|NP_934059.1| ribonuclease E [Vibrio vulnificus YJ016] gi|37198194|dbj|BAC94030.1| ribonuclease E [Vibrio vulnificus YJ016] Length = 1036 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 200/650 (30%), Positives = 321/650 (49%), Gaps = 29/650 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 191 WAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629 + + + + + E ++ + E + ++ Sbjct: 491 EEVDLLSYLL-----PKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQSVPAPAP 545 Query: 630 KRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K + G+ + ++ + + S + +E + E G Sbjct: 546 KAVVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVEAEKTERKDEREKGNRRQKR 605 Query: 689 NYDVSIP---------------PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + + K R ++RK Sbjct: 606 DRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDEAIKPRSQQKRK 655 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEER 109 >gi|217973819|ref|YP_002358570.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223] gi|217498954|gb|ACK47147.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223] Length = 1154 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 210/644 (32%), Positives = 317/644 (49%), Gaps = 22/644 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 28 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 88 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614 + + +K A Y+ ++A P K E+ + Sbjct: 507 SDDEISESSYKRIEQPDAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566 Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + + + + + + ++ + +N + Sbjct: 567 GFFSKLVSAVSAMFAPSEKAEPVKVVETKTTDTSAANANRRNRRNDTRRPRNAQDADKAK 626 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + VS P E + P + + Sbjct: 627 EGTREPRSRNPKKPADAAVSTSTQERPVREKEEAVKRPAKAEPK 670 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 80 ADRHGFLPLKEIAREYF 96 >gi|332139672|ref|YP_004425410.1| ribonuclease G [Alteromonas macleodii str. 'Deep ecotype'] gi|327549694|gb|AEA96412.1| ribonuclease G [Alteromonas macleodii str. 'Deep ecotype'] Length = 488 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 120/565 (21%), Positives = 215/565 (38%), Gaps = 80/565 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV ++ + ++E+ E K+ + GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLINVT-PSESRVALIENGILQEIHVERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I I + +E + + + + + V G + Sbjct: 60 IGLEKAAFLHASDIV-----IHNE----IAEEVSASHIQKQDIRELVRDGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S V++V + E ++ + +QE Sbjct: 111 PIGTKGARLTTDITIPSRYLVFMPSVTHVGVSQRIEEEVERERL--KSLVQEFCDENGGF 168 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +++ E G R++ + + + K + L Sbjct: 169 ILRTAAEGVGKNELQSDAAFL-------------------RRLWDKIQSRMKKRKSNVLY 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + I+ D + + + + L Y G+ + Sbjct: 210 EDLPLARRVLRDFVGTELDRIRIDSKLSFNELHQFTKEYVPEMNGKLEYYTGDRPIFDLY 269 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D +E + + Sbjct: 270 D-------------------------------------------------VENEAQRALE 280 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY+II+QTEA+ +ID+N+G +E+T TN EA + IARQLRLR+L Sbjct: 281 RRVDLKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNTEATQAIARQLRLRNLG 340 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM E + R V L+ + KDRA++ + + GL+EM+R+R R S+ Sbjct: 341 GMILIDFIDMIEPDHKRRVLHSLEVATNKDRAKINIHGFTALGLIEMTRKRTRESIEHIL 400 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C CKG G +++ ++ I+R + Y A +V+ V L+ ++ + Sbjct: 401 CGECPVCKGRGTVKTIETICFEIMREIVRVNRAYDADKFVVYASPKVAEALMGEESHMLA 460 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E I V + + Sbjct: 461 ELEVFVSKQIKVQTETLYNQDKYDV 485 >gi|157146218|ref|YP_001453537.1| ribonuclease E [Citrobacter koseri ATCC BAA-895] gi|157083423|gb|ABV13101.1| hypothetical protein CKO_01975 [Citrobacter koseri ATCC BAA-895] Length = 1065 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 187/518 (36%), Positives = 284/518 (54%), Gaps = 9/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606 + + + +A + E + P Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPA 528 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|300821135|ref|ZP_07101284.1| ribonuclease E [Escherichia coli MS 119-7] gi|331676875|ref|ZP_08377571.1| ribonuclease E (RNase E) [Escherichia coli H591] gi|300526434|gb|EFK47503.1| ribonuclease E [Escherichia coli MS 119-7] gi|331075564|gb|EGI46862.1| ribonuclease E (RNase E) [Escherichia coli H591] Length = 1061 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 197/665 (29%), Positives = 312/665 (46%), Gaps = 51/665 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---------- 618 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 Query: 619 --------------------------------IVSEESTGVIRKRRRRRRRRRPATDHHD 646 SEE+ + + + D Sbjct: 551 VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRK 610 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + S + N E + T + +++ Sbjct: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTD 670 Query: 707 SSSDP 711 P Sbjct: 671 EQQAP 675 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|330811002|ref|YP_004355464.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379110|gb|AEA70460.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1062 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 226/662 (34%), Positives = 328/662 (49%), Gaps = 48/662 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E L+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE----------- 622 +T + A + + ++ L+ + + N Sbjct: 488 EAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVAAPVAAPA 547 Query: 623 ---------------------------------ESTGVIRKRRRRRRRRRPATDHHDAGV 649 +T R RR R T + + Sbjct: 548 AAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPATTERPTRNEERRNGRQQTRNRNGRR 607 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + + EP + + A PP + + Sbjct: 608 DEERKPREERAPREERAPREPREERQPREVREEAPAVAREERAPRPPREERQPRAPREDR 667 Query: 710 DP 711 P Sbjct: 668 KP 669 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|239993992|ref|ZP_04714516.1| ribonuclease G [Alteromonas macleodii ATCC 27126] Length = 488 Score = 303 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 120/565 (21%), Positives = 216/565 (38%), Gaps = 80/565 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV ++ + ++E+ E K+ + GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLINVT-PSESRVALIENGILQEIHVERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I I + +E + + + + + V G + Sbjct: 60 IGLEKAAFLHASDIV-----IHNE----IAEEVSASHIQKQDIRELVRDGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S V++V + E ++ + +QE Sbjct: 111 PIGTKGARLTTDITIPSRYLVFMPSVTHVGVSQRIEEEAERERL--KSLVQEFCDENGGF 168 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +++ E G R++ + + + K + L Sbjct: 169 ILRTAAEGVGKNELQSDAAFL-------------------RRLWDKIQSRMKKRKSNVLY 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + I+ D + + + + L Y G+ + Sbjct: 210 EDLPLARRVLRDFVGTELDRIRIDSKLSFNELHQFTKEYVPEMNGKLEYYPGDRPIFDLY 269 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D +E + + Sbjct: 270 D-------------------------------------------------VENEAQRALE 280 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 281 RRVDLKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATQAIARQLRLRNLG 340 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM E + R V L+ + KDRA++ + + GL+EM+R+R R S+ Sbjct: 341 GMILIDFIDMIEPDHKRRVLHSLEVATNKDRAKINIHGFTALGLIEMTRKRTRESIEHIL 400 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C CKG G +++ ++ I+R + Y A +V+ V L+ ++ + Sbjct: 401 CGECPVCKGRGTVKTIETICFEIMREIVRVNRAYDADKFVVYASPKVAEALMGEESHMLA 460 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E I V + + Sbjct: 461 ELEVFVSKQIKVQTETLYNQDKYDV 485 >gi|323144881|ref|ZP_08079447.1| S1 RNA binding domain protein [Succinatimonas hippei YIT 12066] gi|322415348|gb|EFY06116.1| S1 RNA binding domain protein [Succinatimonas hippei YIT 12066] Length = 941 Score = 303 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 191/580 (32%), Positives = 310/580 (53%), Gaps = 14/580 (2%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 F ++ ++ Q ++VQI KEERG KGAA+TTY+SLAG Y VLMPN + Sbjct: 73 EYYPQGTNFSDHAAMKAALREGQEVIVQIEKEERGQKGAALTTYISLAGSYLVLMPNNPR 132 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 ISR+I + LKE G+++P GMGVI+RTAG ++ E+ D L +LW+ + Sbjct: 133 AGGISRRIEGEERAE-LKEALEGIDIPQGMGVIVRTAGVGKSSEELSWDLSILTKLWEMI 191 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 ++ A AP L+++E ++ RAIRD DI EI++ + + + +++L+ P + + Sbjct: 192 KKAAGTRPAPFLIHQESSIALRAIRDYLRPDIGEILIDDRNVFEQIRHYVELVRPEFTQK 251 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 V Y P+F + IE Q++S +Q EV LPS G ++I+ TEAL SIDVNS ++TR I Sbjct: 252 VHLYASDIPLFSKFQIESQIESAYQREVRLPSGGAIVIDPTEALTSIDVNSAKATRGGDI 311 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 E+TALQTN+EAAEEIARQLRLRD+ GLIV+DFIDM KN R +E +++E++++DRAR+Q Sbjct: 312 EETALQTNIEAAEEIARQLRLRDIGGLIVIDFIDMTPIKNQREIENRMREAVRQDRARIQ 371 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 IS FGLLE+SRQR+R S+ ES++ VC C+G G +R SS+ALSILR +EE + Sbjct: 372 FSRISRFGLLELSRQRLRPSLEESSSHVCPMCQGQGTVRDTSSLALSILRLIEEEAHKDH 431 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++I +V ++LN+KR + + E R+ + ++++ + + + + + Sbjct: 432 QGDVIAIAPVEVATFILNEKRKHVSDIEKRYKIKVSILPDQHMMPAQYEVHRITSNGNGN 491 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + + +A K ++ + + + + E ++ V E + ++ R Sbjct: 492 GSISTDLLEERAKQARKVLQESAVENSSNDTEEQNTSEPAINSEVITEMAAIPKRPAPRE 551 Query: 636 RRRRPATDHHDAG-------------VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + R + + + V D S+ NG Sbjct: 552 TKPRRKEETAQKSLLQKIIEFLSKLFSSAPDEEKKPVKGQRKDDRASRSNYRRGPNTRNG 611 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T + + + P T + + + VK+ + + Sbjct: 612 KTAGTRSTEKAEKPTRTRTVGKAGAVRKSAVKEETVKEPK 651 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 50/75 (66%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD ES K NIY +TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEEVRVALVDGQKLYDLDIESPQHANKKANIYKGIITRIEPSLEAAFVDYGME 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +YY Sbjct: 61 RHGFLPLKEIAREYY 75 >gi|148549015|ref|YP_001269117.1| ribonuclease [Pseudomonas putida F1] gi|148513073|gb|ABQ79933.1| RNAse E [Pseudomonas putida F1] Length = 1090 Score = 303 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 223/610 (36%), Positives = 320/610 (52%), Gaps = 6/610 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL VP MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ EA F++ +MP YA Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 V + S A + + L+ + + N + + Sbjct: 491 EV--LNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAP 548 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+V + S+ D+ + P+ S Sbjct: 549 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQS 608 Query: 694 IPPVSTPEME 703 + E Sbjct: 609 RNRNGRRDEE 618 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 SERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 106 >gi|170717347|ref|YP_001784456.1| ribonuclease [Haemophilus somnus 2336] gi|168825476|gb|ACA30847.1| ribonuclease, Rne/Rng family [Haemophilus somnus 2336] Length = 942 Score = 303 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 190/560 (33%), Positives = 299/560 (53%), Gaps = 2/560 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 ++ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MPN + ISR+I Sbjct: 84 YQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRI 143 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + LKE L+VP G+G+I+RTAG ++ E++ D + L+ W+ +++ + + Sbjct: 144 EGDERLE-LKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP 202 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+++E ++I RAIRD +DI EI++ K Y +AK +KL+ P + V+ Y+ Sbjct: 203 APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEV 262 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 P+F IE Q++S + EV LPS G ++I+ TEAL +ID+NS RSTR IE+TAL TN Sbjct: 263 PLFSHYQIESQIESAFRREVRLPSGGSIVIDATEALTAIDINSARSTRGGDIEETALNTN 322 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E++++DRAR+Q+ IS FG Sbjct: 323 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRFG 382 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 LLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE L+ + Sbjct: 383 LLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEALKENTKQVHTIV 442 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 + YLLN+KR I E R V I V + F + + + + + + Sbjct: 443 PVQIASYLLNEKRKAIHSIEKRHNVDIVVAPNEAMETPHFSVFRVREGEEINELSYNLAK 502 Query: 584 DSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 + +E + ES + ++ E+ + + R++ R Sbjct: 503 LHEMNDETYVVEDAFISRHLENSAATVESAVENAAVSLAIETPAPMPQERKQERESLLRR 562 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 + +S +N + + + + E+ S Sbjct: 563 IIEGIKNLFADNSSKNKKNKNTRQNKNARHNRRNQDRRSSRRIRQEHEIKSDENNKLDTQ 622 Query: 703 ESSNSSSDPIVKKTRWWKRR 722 S + K + Sbjct: 623 HSHYTERYSKHAKKGVDDPQ 642 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ +Q K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 VERHGFLPLKEIAREYF 78 >gi|332994877|gb|AEF04932.1| ribonuclease G [Alteromonas sp. SN2] Length = 488 Score = 303 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 122/565 (21%), Positives = 219/565 (38%), Gaps = 80/565 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RVV++ + ++E+ E K+ + GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLINVT-PSESRVVLIENGILQEIHVERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I I + +E + + + + + V G + Sbjct: 60 IGLEKAAFLHASDIV-----IHNE----IAEEVSASHIQKQDIRELVRDGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S V++V + E ++ + +QE Sbjct: 111 PIGTKGARLTTDITIPSRYLVFMPSVTHVGVSQRIEEEAERERL--KTLVQEFCDENGGF 168 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +++ E G R++ + + + K + L Sbjct: 169 ILRTAAEGVGKAELQQDAAFL-------------------RRLWDKIQSRMKKRKSNVLY 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + I+ D + + + + + L Y G+ + Sbjct: 210 EDLPLARRVLRDFVGTELDRIRIDSKLSFQELFQFTKEYVPEMNGKLEYYTGDRPIFDLH 269 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D +E + + Sbjct: 270 D-------------------------------------------------VENETQRALE 280 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY+II+QTEA+ +ID+N+G +E+T TN EA + IARQLRLR+L Sbjct: 281 RRVDLKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNTEATQAIARQLRLRNLG 340 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM E + R V L+ + KDRA++ + ++ GL+EM+R+R R S+ Sbjct: 341 GMILIDFIDMIEPDHKRRVLHSLEVATSKDRAKINIHGFTSLGLIEMTRKRTRESIEHIL 400 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C CKG G +++ ++ I+R + Y A +V+ VV L+ ++ + Sbjct: 401 CGECPVCKGRGTVKTVETICFEIMREIVRVNRAYDADKFVVYASPKVVEALMGEESHMLA 460 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E I V + + Sbjct: 461 ELEVFVSKQIKVQTETLYNQDKYDV 485 >gi|255038178|ref|YP_003088799.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053] gi|254950934|gb|ACT95634.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053] Length = 520 Score = 303 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 159/565 (28%), Positives = 267/565 (47%), Gaps = 61/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+N++LI+++ E R+ +L+D R+ E E+ + G+IYL V ++ L AAFVD Sbjct: 1 MSNELLINSTQKGE-RIALLQDKRLLEYHVETPDQSFTVGDIYLGTVRKLVAGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P+ + L K+ + Sbjct: 60 VGFEKDAFLHYLDLGPN-----INSLNKLTKDVIAKRA---------------------- 92 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + NF E E E + + + N + E + K R Sbjct: 93 -HSGNLKNFKMEPEIEKLGKIDKVLSKNQPILVQIVKEPISTKGPR-------------- 137 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 ++ +S+AGRY VL+P S +S+KIT+ +R L+ + ++ Sbjct: 138 ---------------LSCDISIAGRYIVLVPF-SNSVNLSKKITDKQERNRLQRLMSSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P GVI+RT + E+ +D + + W+N + ++ V E N IR Sbjct: 182 -PQNFGVIIRTVAMGKDVEELNKDLQDCLDKWENGIKALKDAKPRDRVIGEMNRASSIIR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + I V ++ Y + K ++ + P I+R + + +F + G+E Q+ SL Sbjct: 241 DMLNESFDSITVDSKEVYDDIKAYIHNIAPEKENILRLHNGKNKLFEQFGLEKQIKSLFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V+LP+ GY+II TEAL IDVNSG +S E E TAL NLEAA+EIARQLRLRD+ Sbjct: 301 RSVSLPNGGYLIIEHTEALHVIDVNSGNKSNSEEDQEATALSVNLEAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM++ +N R++ +++ +K DR++ V +S FGLL+++RQR+R + Sbjct: 361 GGIIVVDFIDMKKAENKRTLFDVMRDEMKGDRSKYTVLPLSKFGLLQITRQRVRPEMNIV 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + C C G G I++ V+ I +++ L + I + H + Y + Sbjct: 421 TRETCPTCGGTGTIQASILVSDVIANNLDYILTKQNERGITISLHPFLHSYFTKGLISEQ 480 Query: 540 VEYEARFGVSINVVIGIELADKLFY 564 V++ + + ++ L F Sbjct: 481 VKWFFHYKTWVKLIKDSSLGVVDFK 505 >gi|194432439|ref|ZP_03064726.1| ribonuclease E [Shigella dysenteriae 1012] gi|194419326|gb|EDX35408.1| ribonuclease E [Shigella dysenteriae 1012] gi|332092893|gb|EGI97961.1| ribonuclease E [Shigella dysenteriae 155-74] Length = 1058 Score = 303 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|304312937|ref|YP_003812535.1| Ribonuclease E (RNase E) [gamma proteobacterium HdN1] gi|301798670|emb|CBL46902.1| Ribonuclease E (RNase E) [gamma proteobacterium HdN1] Length = 1015 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 221/692 (31%), Positives = 326/692 (47%), Gaps = 61/692 (8%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+ + D E + ++ LE A A Sbjct: 11 PEEFRVALVDGQKLYDLDIEHRTREQKKANIYKGRITRLEPSLEAAFVD--------FGA 62 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + ++++ PK + +Y +++V+K Q ++VQ+ KEERG KGAA++T++S Sbjct: 63 DRHGFLPLKEISRDYFVRNPKDIQGRYTVKDVLKEGQEVVVQVGKEERGTKGAALSTFIS 122 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN + ISR+I LKEI L +P MG+I+RTAG R+ E+ Sbjct: 123 LAGRYLVLMPNNPRAGGISRRIDGDERSD-LKEIMNALTIPEDMGMIIRTAGMGRSAEEL 181 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D +YL++LW ++ + AP L+Y+E N+I R IRD +DI E+I+ + +++A Sbjct: 182 QWDLDYLLQLWASITTASTQRQAPFLIYQESNVIIRTIRDYLRQDIGEVIIDTPEVHKDA 241 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 F++ +MP Y ++ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVS Sbjct: 242 LGFVRQVMPQYESKIKLYKDTVPLFNRYQIESQIEAAFQREVKLPSGGSIVIDPTEALVS 301 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NS R+T+ IE+TAL TNLEAAEEIARQLRLRD+ GLIV+DFIDM ++KN R VE Sbjct: 302 IDINSSRATKGADIEETALNTNLEAAEEIARQLRLRDIGGLIVIDFIDMNQQKNQREVEH 361 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +LKE+L DRAR+Q G IS FGL+E+SRQR+R S+ E++ VC C G GY+R S+AL Sbjct: 362 RLKEALDIDRARIQTGRISRFGLMELSRQRLRPSLGETSGHVCPRCNGTGYVRDLHSLAL 421 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 SI+R +EE ++ I +V YLLN+KR I E + I V+ L Sbjct: 422 SIMRLIEEEAMKENTAEIHAQVPVNVATYLLNEKRDNIARQEKQNNARILVIPNPNLESP 481 Query: 562 LFYIEKGSPV-------------------------------QALVNTGHKVGSDSQAPSY 590 F + + P+ Sbjct: 482 HFEVTRFRADQITQTTPTASYELISEIEEEEEEIVSFGIENTIKRQEAAVQMIKPTTPAP 541 Query: 591 DKNIECVWQDEALLPIPKSE-------------------SLEDIQDNIVSEESTGVIRKR 631 DE ++P P E E + ++R Sbjct: 542 QPTAAVTNNDEVVVPNPPKEAGFFARLFAWFLHLFGAGKPAEPEVPETPPAKEEAQPQQR 601 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG--FTEN 689 R RR + D D ++ D+ + D +N N Sbjct: 602 SSGNRNRRDNRNRRDNRDNRDNRDNRDNRDNRDNRDRNAGDQRQQAKSQNRDERVEANGN 661 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + P S E ++ D + R Sbjct: 662 VAPNAPDASDDSGEQQSNRQDSRGDRQGNQGR 693 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 56/77 (72%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ ++ +LD E ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATHPEEFRVALVDGQKLYDLDIEHRTREQKKANIYKGRITRLEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI DY+ Sbjct: 62 ADRHGFLPLKEISRDYF 78 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 6/150 (4%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS----EESTGVIRKRRRR- 634 +++ + D+ +E P +S E + S + + G +R+ R Sbjct: 642 DQRQQAKSQNRDERVEANGNVAPNAPDASDDSGEQQSNRQDSRGDRQGNQGRNNRRQDRG 701 Query: 635 -RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R R R + DA +D DS + + H N + Sbjct: 702 GRNRDRARNERQDAETATDSGERSEANSDSQAARQNQPRRDRNERPDRQGHSQERNQERG 761 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + S ++ R+ Sbjct: 762 QERNQERNQERNQGRSQERNQEAGQSSDRQ 791 >gi|331646342|ref|ZP_08347445.1| ribonuclease E (RNase E) [Escherichia coli M605] gi|330910898|gb|EGH39408.1| ribonuclease E [Escherichia coli AA86] gi|331045094|gb|EGI17221.1| ribonuclease E (RNase E) [Escherichia coli M605] Length = 1061 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|299532488|ref|ZP_07045878.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44] gi|298719435|gb|EFI60402.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44] Length = 987 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 189/538 (35%), Positives = 292/538 (54%), Gaps = 6/538 (1%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 7 QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 66 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q I +VI+ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 FKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 127 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A S L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP Sbjct: 186 LWSAIDGAAKASKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ Sbjct: 246 EHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSVDVNSARAI 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D Sbjct: 306 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRLRDALRQD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR++ ++ E C C G+G+IR S AL ILR ++E Sbjct: 366 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQILRIIQEE 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + +V +LLN+KR+ I + E + V++ +V + + +E+ Sbjct: 426 SMKDNTAAVHCQVPVEVASFLLNEKRSEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 485 Query: 571 VQALVNTGHKVGSDSQAPSY-----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + + + P ++ E + ++ ++ I + + Sbjct: 486 DDSRLESMEASYKLADEPEEVTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPPRQ 543 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 44/107 (41%), Positives = 63/107 (58%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG + Sbjct: 1 MLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 61 RHGFLPFKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGN 107 >gi|320179215|gb|EFW54173.1| Ribonuclease E [Shigella boydii ATCC 9905] gi|332089152|gb|EGI94261.1| ribonuclease E [Shigella boydii 5216-82] Length = 1061 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 188/527 (35%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|226943599|ref|YP_002798672.1| Ribonuclease E [Azotobacter vinelandii DJ] gi|226718526|gb|ACO77697.1| Ribonuclease E [Azotobacter vinelandii DJ] Length = 1139 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 210/523 (40%), Positives = 305/523 (58%), Gaps = 4/523 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKSPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL+VPA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLDVPADMGLIVRTAGLGRSSEELQWDLDYLVQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ P L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 191 AIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALSFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE K++E+L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDKMREALEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R V I ++ + F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRVRIVILPSDHMETPHFEVQRLRDDSP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 V + + A + + + + Sbjct: 491 EVQSAQSSYEMTPAEVEEVQLVSSTRTLVRQEAAVKTAPPRNA 533 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 62 AERHGFLPLKEISREYFKKSPEGRINIKDVLSEGQEVIVQVEKEE 106 >gi|161524153|ref|YP_001579165.1| ribonuclease [Burkholderia multivorans ATCC 17616] gi|189351090|ref|YP_001946718.1| ribonuclease G [Burkholderia multivorans ATCC 17616] gi|221199599|ref|ZP_03572643.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2M] gi|221205501|ref|ZP_03578516.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2] gi|221211677|ref|ZP_03584656.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD1] gi|160341582|gb|ABX14668.1| ribonuclease, Rne/Rng family [Burkholderia multivorans ATCC 17616] gi|189335112|dbj|BAG44182.1| ribonuclease G [Burkholderia multivorans ATCC 17616] gi|221169038|gb|EEE01506.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD1] gi|221174339|gb|EEE06771.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2] gi|221180884|gb|EEE13287.1| ribonuclease, Rne/Rng family [Burkholderia multivorans CGD2M] Length = 490 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 133/566 (23%), Positives = 225/566 (39%), Gaps = 80/566 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINLT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL +I P Sbjct: 60 IGLERAAFLHVADIWQP------------------------------------------R 77 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 + P + E+++ +V ++D G + + + Sbjct: 78 IAGEPPSGAAHHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPH 137 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + + E + A + R + ++P KG I R I + L L Sbjct: 138 IGISQKIESEAEREA-------VRARLTAVIPPDEKGGYIVRTIAEDATSEELAADVAYL 190 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 I+ A + +D + R+ + + Sbjct: 191 RKTW--ATIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTTRIQ--------------- 233 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 V + Y+ +F P+ + + Y P+F IE ++ Sbjct: 234 ------------VDSRETYQRLAEFAAEFTPAVSPKLHHYTGERPLFDLYNIETEIQRAL 281 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 282 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 341 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDME ++ +V +LK++L +DR RV V S GL+EM+R+R R S+ Sbjct: 342 GGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV 401 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C+G G +++ +V ILR + Q+ V V+ L+++ + Sbjct: 402 LCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIAAQQVIDLFLDEESQHL 461 Query: 540 VEYEARFGVSINVVIGIELADKLFYI 565 G +++ + L+ + + I Sbjct: 462 AMLIDFIGKPVSLQVESNLSQEQYDI 487 >gi|153827553|ref|ZP_01980220.1| ribonuclease E [Vibrio cholerae MZO-2] gi|149738477|gb|EDM52873.1| ribonuclease E [Vibrio cholerae MZO-2] Length = 957 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 204/664 (30%), Positives = 316/664 (47%), Gaps = 39/664 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------------------ESLE 613 + + + +A + E V + I + E Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547 Query: 614 DIQDNIVSEESTG--------------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 V + + + D + Sbjct: 548 PQPVAEVKQPAQSGFFSRVFKAIASLFSTTPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D + N+ + P E N ++ P +++ Sbjct: 608 RRNPRDKNRRRGNEENNERNDKETSNNNRKPQERKPKQERGERNERNDRNERPETERSER 667 Query: 719 WKRR 722 RR Sbjct: 668 QDRR 671 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|261253418|ref|ZP_05945991.1| ribonuclease E [Vibrio orientalis CIP 102891] gi|260936809|gb|EEX92798.1| ribonuclease E [Vibrio orientalis CIP 102891] Length = 983 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 203/657 (30%), Positives = 323/657 (49%), Gaps = 31/657 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + + L+ P Sbjct: 188 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHISLIRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVSRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +L++S++ DR Sbjct: 308 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFDVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVI 628 + + + +A + E V + I + Q Sbjct: 488 EEFDLLSYLLPQKLEAMKEAEGKEPVEVEAKPKKIEEPALKGFASPSQTAPALATPAPTA 547 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG------ 682 + ++ + PA D V ++ + + S + + + + G Sbjct: 548 KPTPEKKAKSEPAQDEQPGLVSRFFKALGSFLFGSTEKEEQNKEEQKPKERKEGNRNNRN 607 Query: 683 ----------------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +EN + + + + + P +K + K ++ Sbjct: 608 RRNRNDNRRRNNRDNRNDNRSENREDKRDNKRKNTRDEAANEAKPNERKQQNRKPKQ 664 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 15/174 (8%), Positives = 37/174 (21%), Gaps = 20/174 (11%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + D + ++ K ++ D N Sbjct: 599 KEGNRNNRNRRNRNDNRRRNNRDNRNDNRSENREDKRDNKRKNTRDEAANEAKPNERKQQ 658 Query: 629 RKRRRRRRRRRP--------------------ATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 ++ ++ RR + TD D V + + Sbjct: 659 NRKPKQDRRNKRDDVKPSKVAEEGLKLAADAQQTDKPDVRKERAEEKAAKVKERRQRRKL 718 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + A + + E S + + + RR Sbjct: 719 SKQVRVKDQVNKAKADEEAKQVQSEAKAEAVEEKAVDAVSEESAEQPKQRRNRR 772 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 31/131 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + + + +++ E L + D D Sbjct: 645 EAANEAKPNERKQQNRKPKQDRRNKRDDVKPSKVAEEGLKLAADAQQTDKPDVRKERAEE 704 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + RR+RR+ V + + S + + E A Sbjct: 705 KAAKVKERRQRRKLSKQVRVKDQVNKAKADEEAKQVQSEAKAEAVEEKAVDAVSEESAEQ 764 Query: 686 FTENYDVSIPP 696 + + P Sbjct: 765 PKQRRNRRSPR 775 >gi|147674453|ref|YP_001217556.1| ribonuclease E [Vibrio cholerae O395] gi|146316336|gb|ABQ20875.1| ribonuclease E [Vibrio cholerae O395] Length = 688 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 205/641 (31%), Positives = 320/641 (49%), Gaps = 23/641 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+T ++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTAFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------------ESLEDIQD 617 + + + +A + E V + I + + + + Sbjct: 488 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 547 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E + R + A+ + V + + E +D N Sbjct: 548 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 607 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E+SNS+ P +K + Sbjct: 608 RRNPRDKNRRRGNEENNERNDK---ETSNSNRKPQERKPKQ 645 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|153000232|ref|YP_001365913.1| ribonuclease [Shewanella baltica OS185] gi|151364850|gb|ABS07850.1| ribonuclease, Rne/Rng family [Shewanella baltica OS185] Length = 1148 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 210/650 (32%), Positives = 318/650 (48%), Gaps = 23/650 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D ++ Sbjct: 28 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLP 87 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 88 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 147 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 148 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQ 206 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 207 HHWAAITEASQVKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 266 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 267 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 326 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 327 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 386 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 387 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 446 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 447 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRHR 506 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN---------------IECVWQDEALLPIPKSESLED 614 + + +K +A Y+ ++A P K E+ + Sbjct: 507 SDDEISESSYKRIEQPEAKLYEPRKLERTAAPIPALKGFAAPQKVEQAPSPTVKVEAPQP 566 Query: 615 IQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + + + + + + ++ + +N + Sbjct: 567 GFFSKLVSAISAMFAPSEKAEPVKVVETKTTDTSAANANRRNRRNDTRRPRNAQDADKAK 626 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRWWKRR 722 + + V+ P E + K R + Sbjct: 627 EGTREPRSRNSKKPADAAVNTSAQERPVREKEETKRPARSEPKPRVQAPK 676 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 20 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 79 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 80 ADRHGFLPLKEIAREYF 96 >gi|269962048|ref|ZP_06176402.1| ribonuclease E [Vibrio harveyi 1DA3] gi|269833132|gb|EEZ87237.1| ribonuclease E [Vibrio harveyi 1DA3] Length = 1029 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 195/565 (34%), Positives = 299/565 (52%), Gaps = 8/565 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y A++ ++L+ P Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAREHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FISRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +A + E D + P E + + Sbjct: 491 EEFDLLSYLLPKKLEAMKEAEGKEPAEAD--IKPKRIEEPVLKGFAAPAQTAPAPSATSK 548 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSI 656 +++ G+ S + Sbjct: 549 PAPAAKKKEVVQEEKPGLFSRLFKA 573 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 34/128 (26%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + +Q P + + A SE+ + + ++ Sbjct: 652 KQQNRNQKRKPKAQQAEKAQEPKANAKVAEKGLQLAAEARTGSEAKPEESKAKPNAKAEK 711 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 V +R+RR+ + A ++ + I+ +P + + Sbjct: 712 VKERRQRRKLNKSVRVKDQQAAEQAEQETPVQAIEAVEAPVEKPVEAAAEAQQDKAESKQ 771 Query: 687 TENYDVSI 694 N Sbjct: 772 RRNRRSPR 779 >gi|262166133|ref|ZP_06033870.1| ribonuclease E [Vibrio mimicus VM223] gi|262025849|gb|EEY44517.1| ribonuclease E [Vibrio mimicus VM223] Length = 1028 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 206/639 (32%), Positives = 324/639 (50%), Gaps = 18/639 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN--IVSEESTGVIR 629 + + + E ++ + + E + +E Sbjct: 488 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 542 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K + +R+ G+ S + +I N+ + + + + N E + Sbjct: 543 KAKAEPQRQVETVQPAQPGLFSRLFKAIANLFSPAPEAAKVEAAVAQSNEQEKPRRERND 602 Query: 689 NYDVSIPPVSTPEMESSNSSSDPI----VKKTRWWKRRK 723 E S+ +D +K + K ++ Sbjct: 603 RRRNPRDKNRRRGNEESSERNDKEGATNHRKPQDRKPKQ 641 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|303256985|ref|ZP_07342999.1| ribonuclease E [Burkholderiales bacterium 1_1_47] gi|302860476|gb|EFL83553.1| ribonuclease E [Burkholderiales bacterium 1_1_47] Length = 1033 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 205/658 (31%), Positives = 310/658 (47%), Gaps = 31/658 (4%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED---- 151 A+ A+ + D+ I + + + I E S+ + D Sbjct: 11 AEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYGEERHGFLPF 70 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R I+E + L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I + +E L P GM +I RTAG RT E+K DF+YL++L Sbjct: 131 NNPRGGGVSRRIEGEEREEL-RENMSKLPTPKGMSLIARTAGIGRTVEELKWDFDYLLQL 189 Query: 272 WDNVRELALNS------------------------VAPHLVYEEGNLIKRAIRDLYCKDI 307 W + E A AP L+ EE NL+ RAIRD + DI Sbjct: 190 WQAIVEAATPQYEDTEGNFVTAPVGPLGQKYERVNPAPFLIVEESNLVIRAIRDYFQPDI 249 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 +EI+V + Y +AK FM +MP V++Y D P+F R IE Q+++ + V LPS Sbjct: 250 AEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRFQIENQIETAYSRTVPLPS 309 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G ++I+ TEALV+IDVNS R+T IE TA TN EAAEE+ARQ+RLRDL GLIV+DF Sbjct: 310 GGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEEVARQMRLRDLGGLIVIDF 369 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDME+ + R++E+++KE+++ DRARVQ+ IS FGLLE+SRQR+R S+ E + C C Sbjct: 370 IDMEDPAHQRAIEQRIKEAIRHDRARVQIAKISRFGLLELSRQRLRPSLYEGSHITCPRC 429 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G G IR S A+ +LR ++E L+ + DV YLLN+KR I + E R Sbjct: 430 NGIGAIRDTESSAIQVLRILQEEALKDGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHH 489 Query: 548 VSINVVIGIELADKLFYIEKGSPVQA--LVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 + + ++ L + IE+ + AP + Sbjct: 490 IEVILIPNKTLETPHYQIERLRTEDQLLTEGAPSYKRVEELAPEPEAPYSRAQNVAPSTK 549 Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + ++ + + + + + ++ + A + + + + Sbjct: 550 PRQIPVIKGLPVREDAPKHVEPAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNS 609 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + S + ++ + PV+ E VK T+ RR+ Sbjct: 610 SRGDKSSVRKERGERKNRRQERDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQ 667 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 105/741 (14%), Positives = 210/741 (28%), Gaps = 52/741 (7%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ ++D ES ++Q K NIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATHAEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 RHGFLPF EI Y++ R A +KE+ T+ + G+ + Sbjct: 62 EERHGFLPFKEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISL 121 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK---RQYCIQEVIKNRQI 179 +S + E + S PK R I ++ + Sbjct: 122 AGRYLVLMPNNPRGGGVSRRIEGEEREELRENMSKLPTPKGMSLIARTAGIGRTVEELKW 181 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 +++ + AA Y G + P G+ R P + Sbjct: 182 DFDYLLQLWQAIVEAATPQYEDTEGNFVT-APVGPLGQKYERVNPAP---------FLIV 231 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV-RELALNSVAPHLVYEEGNLIKRA 298 E + +R + + + + + ++ L R Sbjct: 232 EESNLVIRAIRDYFQPDIAEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRF 291 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 + + V G D + L+ R + Sbjct: 292 QIENQIETAYSRTVPLPSGGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEE 351 Query: 359 HQTEVTLPSRGYVIINQTEALVSID-VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 ++ L G L+ ID ++ + IE +E R R R Sbjct: 352 VARQMRLRDLG--------GLIVIDFIDMEDPAHQRAIEQRI--------KEAIRHDRAR 395 Query: 418 -DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI--SNFGLLEMSRQRIRS 474 +A + +++ ++ S+ + + + + S +L + ++ Sbjct: 396 VQIAKISRFGLLELSRQRLRPSLYEGSHITCPRCNGIGAIRDTESSAIQVLRILQEEALK 455 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 + + + I ++ + T + L + Sbjct: 456 DGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHHIEVILIPNKTL--ETPHYQIERLRTE 513 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 + E + + E + +P G + + Sbjct: 514 D-QLLTEGAPSYKRVEELAPEPE--APYSRAQNVAPSTKPRQIPVIKGLPVREDAPKHVE 570 Query: 595 ECVWQDEALLPIP------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 E SE+ E + S ++ R R+ R Sbjct: 571 PAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNSSRGDKSSVRKERGERKNRRQE 630 Query: 643 DHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + V+ + V ++P+ + E T + Sbjct: 631 RDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQKETVEKAKNVPAVRPAAVEKTEK 690 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 E + + + + +R Sbjct: 691 PERIERTRKALKENSALQDKR 711 >gi|152988059|ref|YP_001347557.1| ribonuclease E [Pseudomonas aeruginosa PA7] gi|150963217|gb|ABR85242.1| ribonuclease E (RNase E) [Pseudomonas aeruginosa PA7] Length = 1073 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 218/620 (35%), Positives = 317/620 (51%), Gaps = 19/620 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 27 EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 86 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 87 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 146 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 147 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 205 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 206 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 265 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 266 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 325 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 326 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 385 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 386 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 445 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 446 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 505 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A ++ + V L+ + Q + K Sbjct: 506 EL--VAGQTSYEMATVEHEDAQPVSSTRTLVRQEAAVKTVAPQQPAPQAQEPVEAPKPMP 563 Query: 634 RRR-------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + A + Q+ D+ + + + Sbjct: 564 EPSLFQGLVKSLVGLFAGKEQPAAKPAESAKPAAERQSRQDERRNGRQQNRRRDGRDGNR 623 Query: 681 NGAHGFTENYDVSIPPVSTP 700 P Sbjct: 624 RDEERKPREERAERQPREER 643 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 17 KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 76 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 77 AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 121 >gi|330999174|ref|ZP_08322893.1| S1 RNA binding domain protein [Parasutterella excrementihominis YIT 11859] gi|329575374|gb|EGG56918.1| S1 RNA binding domain protein [Parasutterella excrementihominis YIT 11859] Length = 1033 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 205/658 (31%), Positives = 310/658 (47%), Gaps = 31/658 (4%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED---- 151 A+ A+ + D+ I + + + I E S+ + D Sbjct: 11 AEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYGEERHGFLPF 70 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + R I+E + L+VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 71 KEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISLAGRYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N +G +SR+I + +E L P GM +I RTAG RT E+K DF+YL++L Sbjct: 131 NNPRGGGVSRRIEGEEREEL-RENMSKLPTPKGMSLIARTAGIGRTVEELKWDFDYLLQL 189 Query: 272 WDNVRELALNS------------------------VAPHLVYEEGNLIKRAIRDLYCKDI 307 W + E A AP L+ EE NL+ RAIRD + DI Sbjct: 190 WQAIVEAATPQYEDTEGNFVTAPIGPLGQKYERVNPAPFLIVEESNLVIRAIRDYFQPDI 249 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 +EI+V + Y +AK FM +MP V++Y D P+F R IE Q+++ + V LPS Sbjct: 250 AEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRFQIENQIETAYSRTVPLPS 309 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G ++I+ TEALV+IDVNS R+T IE TA TN EAAEE+ARQ+RLRDL GLIV+DF Sbjct: 310 GGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEEVARQMRLRDLGGLIVIDF 369 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDME+ + R++E+++KE+++ DRARVQ+ IS FGLLE+SRQR+R S+ E + C C Sbjct: 370 IDMEDPAHQRAIEQRIKEAIRHDRARVQIAKISRFGLLELSRQRLRPSLYEGSHITCPRC 429 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G G IR S A+ +LR ++E L+ + DV YLLN+KR I + E R Sbjct: 430 NGIGAIRDTESSAIQVLRILQEEALKDGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHH 489 Query: 548 VSINVVIGIELADKLFYIEKGSPVQA--LVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 + + ++ L + IE+ + AP + Sbjct: 490 IEVILIPNKTLETPHYQIERLRTEDQLLTEGAPSYKRVEELAPEPEAPYSRAQNVAPSTK 549 Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + ++ + + + + + ++ + A + + + + Sbjct: 550 PRQIPVIKGLPVREDAPKHVEPAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNS 609 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + S + ++ + PV+ E VK T+ RR+ Sbjct: 610 SRGDKSSVRKERGERKNRRQERDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQ 667 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 104/741 (14%), Positives = 209/741 (28%), Gaps = 52/741 (7%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ ++ ++D ES ++Q K NIY +TR+EPSL+A FVDYG Sbjct: 2 KRMLFNATHAEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 RHGFLPF EI Y++ R A +KE+ T+ + G+ + Sbjct: 62 EERHGFLPFKEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFISL 121 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK---RQYCIQEVIKNRQI 179 +S + E + S PK R I ++ + Sbjct: 122 AGRYLVLMPNNPRGGGVSRRIEGEEREELRENMSKLPTPKGMSLIARTAGIGRTVEELKW 181 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 +++ + AA Y G + P G+ R P + Sbjct: 182 DFDYLLQLWQAIVEAATPQYEDTEGNFVT-APIGPLGQKYERVNPAP---------FLIV 231 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV-RELALNSVAPHLVYEEGNLIKRA 298 E + +R + + + + + ++ L R Sbjct: 232 EESNLVIRAIRDYFQPDIAEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRF 291 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 + + V G D + L+ R + Sbjct: 292 QIENQIETAYSRTVPLPSGGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEE 351 Query: 359 HQTEVTLPSRGYVIINQTEALVSID-VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 ++ L G L+ ID ++ + IE +E R R R Sbjct: 352 VARQMRLRDLG--------GLIVIDFIDMEDPAHQRAIEQRI--------KEAIRHDRAR 395 Query: 418 -DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI--SNFGLLEMSRQRIRS 474 +A + +++ ++ S+ + + + + S +L + ++ Sbjct: 396 VQIAKISRFGLLELSRQRLRPSLYEGSHITCPRCNGIGAIRDTESSAIQVLRILQEEALK 455 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 + + + I ++ + T + L + Sbjct: 456 DGTTALQAQVPVDVATYLLNEKRDDIAKIEHRHHIEVILIPNKTL--ETPHYQIERLRTE 513 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 + E + + + +P G + + Sbjct: 514 D-QLLTEGAPSYKRVEELAPEP--EAPYSRAQNVAPSTKPRQIPVIKGLPVREDAPKHVE 570 Query: 595 ECVWQDEALLPIP------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 E SE+ E + S ++ R R+ R Sbjct: 571 PAKPSKEPAKKEKSFFQKILAFFTGNSEAEEKEEAKNNSSRGDKSSVRKERGERKNRRQE 630 Query: 643 DHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + V+ + V ++P+ + E T + Sbjct: 631 RDDQRKTRTPVAKQEKVERAPKQPRQVKPTKTEDRRQKETVEKAKNVPAVRPAAVEKTEK 690 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 E + + + + +R Sbjct: 691 PERIERTRKALKENSALQDKR 711 >gi|268589207|ref|ZP_06123428.1| ribonuclease E [Providencia rettgeri DSM 1131] gi|291315464|gb|EFE55917.1| ribonuclease E [Providencia rettgeri DSM 1131] Length = 1092 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 195/553 (35%), Positives = 305/553 (55%), Gaps = 8/553 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIK 71 Query: 154 GGSPEDVPKKFK--RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + E P + + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ +++D Y +R Sbjct: 132 NNPRAGGISRRIEGEDRTE-LKEALSSLQIPDGMGLIVRTAGVGKSAESLQQDLLYRLRH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP- 330 W+ +++ A N AP L+++E N+I RA RD DI EI++ K A++ ++ + Sbjct: 191 WEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIEAIGRG 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 251 DFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LS+LR +EE Sbjct: 371 RARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSVLRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + + E R V + +V ++ F++ + Sbjct: 431 ALKENTHEVHAIVPVQIASYLLNEKRKAVSDIEQRQSHVRVVIVPNDQMQTPHFHVIRIR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + ++ E + + S ++ + + Sbjct: 491 KGEEVNTLSYNLAQYHETVTLTQSDETTAERKIPEQPAISAFALQEPVDMSTVKPKETAT 550 Query: 630 KRRRRRRRRRPAT 642 K + PA+ Sbjct: 551 KAPVKSVATEPAS 563 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|262404384|ref|ZP_06080939.1| ribonuclease E [Vibrio sp. RC586] gi|262349416|gb|EEY98554.1| ribonuclease E [Vibrio sp. RC586] Length = 1024 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 191/518 (36%), Positives = 291/518 (56%), Gaps = 6/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + + +A + E + D I + Sbjct: 488 EEQDILSYLIPKKLEAMKEAEGKEVLDVDLKPKRIEEP 525 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|312882471|ref|ZP_07742212.1| ribonuclease E [Vibrio caribbenthicus ATCC BAA-2122] gi|309369871|gb|EFP97382.1| ribonuclease E [Vibrio caribbenthicus ATCC BAA-2122] Length = 997 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 183/588 (31%), Positives = 297/588 (50%), Gaps = 20/588 (3%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMPN Sbjct: 75 KEYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNP 134 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 + ISR+I + LK LE+P MG+I+RTAG ++ E++ D L+ W Sbjct: 135 RAGGISRRIEGDERTQ-LKAALNTLELPQEMGLIVRTAGVGKSAEELEWDLNVLLNHWGA 193 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +++ + ++ AP L+++E N+I RAIRD +DI EII+ + A + ++L+ P + Sbjct: 194 IKQASDSNTAPFLIHQESNVIVRAIRDYLRRDIGEIIIDSTTIHERALNHIRLVRPDFES 253 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V +++ P+F + IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 254 RVHKHDGEVPLFSKYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGD 313 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +L++S++ DRARV Sbjct: 314 IEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRLDRARV 373 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 Q+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE L+ Sbjct: 374 QIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEALKD 433 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 ++ + YLLN+KR ++ E V I VV ++ F + + + Sbjct: 434 NTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFDVIRVREGEEF 493 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIRKR 631 + + + +A ++ E + I + Q ++ Sbjct: 494 DLLSYLLPNKIEALKEAESKEPSEIEAKPRKIEEPALKGFAAPNQSAPSPTNKPAKGTQK 553 Query: 632 RRRRRRRRPAT----------------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 ++ ++ + D + + + Sbjct: 554 AAQKALQQEQKPGLIGRFLKALGGFLFGSDEKKNKQDSQQKERKEGQRNNRNRRNRNDNR 613 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + ++S +K + K ++ Sbjct: 614 RRNNRDNRDNRDNRDNRDNRDDARRKAAKNDSQEKQNERKQQNRKPKQ 661 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 ALRHGFLPLKEIAKEYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 >gi|315126330|ref|YP_004068333.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of [Pseudoalteromonas sp. SM9913] gi|315014844|gb|ADT68182.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of [Pseudoalteromonas sp. SM9913] Length = 999 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 193/618 (31%), Positives = 306/618 (49%), Gaps = 53/618 (8%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 F + I++VIK Q ++VQ+ KEERG KGAA+TT++S+AG Y VLMPN + Sbjct: 78 FPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAG 137 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 ISR+I + LKE LE+P GMG+I+RTAG ++ E+ D + L+ W+ +++ Sbjct: 138 GISRRIEGDERTE-LKESLSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQ 196 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 A ++ AP L+++E N+I RAIRD +DI EI++ + + EAK ++ P + V+ Sbjct: 197 AADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVK 256 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS ++T+ IE+ Sbjct: 257 LYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATKGGDIEE 316 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +LK++ + DRARVQ+G Sbjct: 317 TALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIG 376 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 IS FGLLEMSRQR+R S+ E++ VC C G G IRS S+ALSILR +EE ++ Sbjct: 377 KISRFGLLEMSRQRLRPSLGEASQGVCPRCSGQGTIRSNESIALSILRLIEEEAIKDNTA 436 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 + V YLLN++R ++ E + ++ + + + + + L Sbjct: 437 QVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETPHYEVMRLRKDETLETV 496 Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL------------------------- 612 ++ + +++ + + Sbjct: 497 SYEQVVAPEPEAFEMSKSPAAPVREEPKLKGVVMPSTPAPQAAAKAAPVVEAKAEIGLFA 556 Query: 613 ------------EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + Q + E R R R ++ + + +N Sbjct: 557 ALGKWIKSLFGSDTEQKSEKQTEKQSQDRPSNNRGNDNRRRNNNQRRRNNNPRNKPRNER 616 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME---------------SS 705 + E + + + + N + P E + S Sbjct: 617 TADAEAKNESAPVNDTQEKNENRNKRRRNSNTRKRPEHKTEDKTQVKAEATQNADTVVKS 676 Query: 706 NSSSDPIVKKTRWWKRRK 723 + +++P +K + ++R+ Sbjct: 677 DKNAEPKEQKPKVRRQRR 694 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI Y+ Sbjct: 62 ADRHGFLPLKEIARTYF 78 >gi|238897580|ref|YP_002923259.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465337|gb|ACQ67111.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 951 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 199/631 (31%), Positives = 312/631 (49%), Gaps = 9/631 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS------N 148 + A+ D D+ I + ++ A I E S+ +A D S Sbjct: 10 QHEELRVALVDGQKLYDLDIESLGYEQKKANIYKGKITRIEPSLEAAFVDYGSARQGFLP 69 Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 ++++ + I++V+ Q L+VQI KEERG KGAA+TT++SLAG Y V Sbjct: 70 LKEISPEYFSPNYSNHGARPNIKDVLSESQELIVQIDKEERGTKGAALTTFISLAGSYLV 129 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 LMPN ISR+I + LK+ LE+P GMG+I+RTAG ++ ++ D Sbjct: 130 LMPNNPGAGGISRRIEGDDRAE-LKKAMASLELPEGMGLIVRTAGLGKSSEALQWDLSLR 188 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-L 327 ++ WD ++++A N AP L+++E N++ RA RD DISEI++ K AKD + L Sbjct: 189 LKHWDAIKKIAENRKAPFLIHQESNVVVRAFRDYLRPDISEILIDNPKVLELAKDHITAL 248 Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 P ++ ++ Y +F IE Q++S + EV L S G ++I+ +EAL++ID+NS Sbjct: 249 GRPDFSNKIKLYTGEVSLFSHYQIESQIESAFKREVRLLSGGSIVIDTSEALIAIDINSA 308 Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 R+T IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L+E+L Sbjct: 309 RATSGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPIRHQREVENRLREAL 368 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 ++DRAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S+ALSILR + Sbjct: 369 RQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLALSILRLI 428 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIE 566 EE L+ H + +V YLLN+KR + E R GV +V ++ + + Sbjct: 429 EEEALKENTHEVHAIVPVEVASYLLNEKRDAVNAIEKRQEGVRAVIVPNAQMQTPHYTVL 488 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + + + + S I+ +S ++ Sbjct: 489 RVRKGEESLTLSYMLPQRYETEMPQTQDDPSNGRKHCEEPALSSLSFPIKSTDISNKNGA 548 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R ++ + + +S + +P + N + Sbjct: 549 HGLNNARPERSFFQTLITVIQRLLGWIKKKETHGLESKNTAAQPQENAYVNRKTDTRKER 608 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + + + K R Sbjct: 609 SPREPREDLGRNKLSRSQTATRDKTKNKNNR 639 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQHEELRVALVDGQKLYDLDIESLGYEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 R GFLP EI P+Y+ Sbjct: 62 SARQGFLPLKEISPEYF 78 >gi|255321252|ref|ZP_05362418.1| ribonuclease E [Acinetobacter radioresistens SK82] gi|262380062|ref|ZP_06073217.1| ribonuclease E [Acinetobacter radioresistens SH164] gi|255301806|gb|EET81057.1| ribonuclease E [Acinetobacter radioresistens SK82] gi|262298256|gb|EEY86170.1| ribonuclease E [Acinetobacter radioresistens SH164] Length = 1170 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 198/552 (35%), Positives = 298/552 (53%), Gaps = 12/552 (2%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFKADSRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKE+ L+VP GM VI+RTAG R++ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGAVREE-LKEMLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D+SEI++ E+ Y EA +F+K +MP Sbjct: 190 TQIQSTANSGPSPMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GLIV+DFIDM +N R VE KL+E+ + DRA Sbjct: 310 HDVEETALSTNLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + V ++ ++LN+KR ++V E + V+ L + I Sbjct: 430 HERQGEVQVEVPVEIAAFMLNEKRHSLVYLEQTSNTRVTVLPHPHLETPHYEISYNPEGF 489 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A + + S + +EA + + + + Sbjct: 490 APTSYERTEATRSSEKNLGYESADWHLEEAEQVGQST-----AAPTDKPGKPQNRKTQPQ 544 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++ S + ++N + ++ GA Sbjct: 545 AAAPQQPAQVPAAKTATSSPCAWLENLFVQKQAHTVDHSRTANNAAAAIEQMVNTGAVSR 604 Query: 687 TENYDVSIPPVS 698 + ++ V+ Sbjct: 605 GQFGQINNAAVA 616 Score = 120 bits (301), Expect = 8e-25, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 53/78 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ +R+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALVTGHRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 NR GFL EI Y++ Sbjct: 62 ANRQGFLSMREIANSYFK 79 >gi|170768072|ref|ZP_02902525.1| ribonuclease E [Escherichia albertii TW07627] gi|170122838|gb|EDS91769.1| ribonuclease E [Escherichia albertii TW07627] Length = 1069 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 187/518 (36%), Positives = 286/518 (55%), Gaps = 9/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPI 606 + + + +A + E + P Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPA 528 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|262170982|ref|ZP_06038660.1| ribonuclease E [Vibrio mimicus MB-451] gi|261892058|gb|EEY38044.1| ribonuclease E [Vibrio mimicus MB-451] Length = 1034 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 198/642 (30%), Positives = 314/642 (48%), Gaps = 26/642 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + E ++ + + E + + Sbjct: 488 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 542 Query: 632 RRRRRRRRPATDHHDAG---------------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + ++ A + ++ + +P N Sbjct: 543 KAKAETQQQVETAQPAQPGLFSRLFKAIANLFSPAPEAAKAEAAVVQSNEQEKPRRERNE 602 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E + ++ P +K + Sbjct: 603 RNDRRRNPRDKNRRRGNEENSERNDKEGATNNRKPQDRKPKQ 644 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|330878260|gb|EGH12409.1| ribonuclease E [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1109 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598 + + AP + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 547 Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + + + + + + +++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 607 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 R + + E + E+ P Sbjct: 608 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 667 Query: 698 STPEMESSNSSSDPIV 713 T + + Sbjct: 668 RTSRERKPREAREDRP 683 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|257454041|ref|ZP_05619315.1| ribonuclease E [Enhydrobacter aerosaccus SK60] gi|257448519|gb|EEV23488.1| ribonuclease E [Enhydrobacter aerosaccus SK60] Length = 1266 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 201/614 (32%), Positives = 312/614 (50%), Gaps = 44/614 (7%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ +PE + + I+++IK L+VQ+ KEERGNKGAA++T +SLAGRY VLMP Sbjct: 70 IREIAPEYLAGDPRSTTNIKQLIKEGDELIVQVEKEERGNKGAALSTLISLAGRYLVLMP 129 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N ++G ISR+I+ + + K+ L +P GM VI+RTAG +T E+++D ++L+ + Sbjct: 130 NNARGGGISRQISGKLRDEM-KQALSELRLPKGMSVIIRTAGIGKTTDELQQDLDHLLNI 188 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + +P L+++E ++ RA+RD DI+EI V E Y EA +F++ +MP Sbjct: 189 WKGIQQQSQKFPSPRLLHQEAGVVTRAVRDYLRDDITEIWVDNEYAYNEAANFIEAVMPQ 248 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 A +R+Y D P+F R GIE Q+++ +Q EV LPS G ++I+QTEALVSID+NS ++T+ Sbjct: 249 QANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDINSSKATK 308 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 + +TA TNLEAA+EIARQLRLRD+ GLIV+DFIDM + + VE +LKE+ K DR Sbjct: 309 GADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQVENRLKEATKNDR 368 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q IS FGLLEMSRQR+R S+ E+T +C C G G IR S+ALSI+R +E+ Sbjct: 369 ARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRSLALSIMRQIEQRA 428 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 LQ + +D+ +LLN+KR T+V E G I ++ L F I S Sbjct: 429 LQERHGEVQAEVPTDIAAFLLNEKRETLVCLEQESGTRITILPHAHLESPEFNITYNSDG 488 Query: 572 QALVNTGHKVGSDSQAPSYD--------KNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 A + S Q + V + + + + S Sbjct: 489 FAPSSYERVAESQQQEYKDRGYDTSNWHTDDNEVSRVAPTGNHNAWSNASNAANTTPSPA 548 Query: 624 STGVIRKRRRR---------RRRRRPATDHHDAGVVSDVSS---IQNVIDDSFDMYMEPS 671 + ++ + +P V+ +S+ + + + Sbjct: 549 TPSNKPQQTANNTTAAKAAVPQPVQPTATVPATSAVAWLSNLFAPTQQAQVTPHFSGQDA 608 Query: 672 DITNHNLLENGAHG-----------------------FTENYDVSIPPVSTPEMESSNSS 708 +L+ GA + + P + +S Sbjct: 609 ASAIESLVNTGAQSLGVQGQINHAALTASIPAVSANTSETSANPYQEASQQPSATAESSD 668 Query: 709 SDPIVKKTRWWKRR 722 D +K K + Sbjct: 669 KDAERRKRGNRKPK 682 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 38/76 (50%), Positives = 51/76 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + N + + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SQRQGFLPIREIAPEY 77 >gi|325981764|ref|YP_004294166.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212] gi|325531283|gb|ADZ26004.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212] Length = 837 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 196/476 (41%), Positives = 287/476 (60%), Gaps = 2/476 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K +P + IQ++++ Q L+VQ+ K+ERG KGAA+TTY+SLAGRY VL+PN Sbjct: 71 KEIAPSCFSESGTPNARIQDLLQEGQELIVQVDKDERGTKGAALTTYISLAGRYLVLIPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S +SR+IT +L+E+ LE+P GM +I RTAG R+K E++ D YL +LW Sbjct: 131 NSNSGGVSRRITGEER-NDLREVIAKLEIPTGMSIIARTAGIGRSKEELQWDLNYLTQLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E A N L+Y+E +L+ RAIRD + ++I EI++ Y +A FM +MP+ Sbjct: 190 YAIEEAANNQDGVFLIYQESSLVIRAIRDYFSQEIGEILIDSRDIYEQASQFMAHVMPAN 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y D P+F R IE Q+++ + +V+LPS G ++I+ TEALVS+DVNS R+ R Sbjct: 250 VDRLKFYHDDVPLFSRFQIEHQIETAYSRQVSLPSGGAIVIDHTEALVSVDVNSARAIRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM+ ++N R VE +L E+L++DRA Sbjct: 310 LDIEHTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMDVQRNQREVEARLHEALRQDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+QVG IS FGLLE+SRQR+R S+ ES CT C+G G+IR S AL ILR ++E + Sbjct: 370 RIQVGKISRFGLLELSRQRLRPSLGESNYIPCTRCQGTGFIRGTDSSALHILRIIQEEAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + + V DV +LLN+KRA I + E R ++I ++ I + + I + Sbjct: 430 KENTNTLHVQLPVDVATFLLNEKRAEIYDIEMRQRINIVLIPNIHIETPNYSINRLRQED 489 Query: 573 ALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 N + + D N + +++ P + + V E+ + Sbjct: 490 LRSNEAVASYKLVEKNTEDNNLVFSEQKNKPTRPQAAVQGITPTLPAPVREDKSRD 545 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 47/105 (44%), Positives = 61/105 (58%), Gaps = 3/105 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+ EE RV ++ + +LD ES K+Q K NIY A +TRVEPSL+AAFVDYG Sbjct: 2 KRMLFNATQPEELRVAIVNGQTLIDLDIESVSKEQRKSNIYKAVITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ---IPFSDRQALLKESNIAQTDSEAVA 104 RHGFLPF EI P + P + Q LL+E + Sbjct: 62 CERHGFLPFKEIAPSCFSESGTPNARIQDLLQEGQELIVQVDKDE 106 >gi|332529425|ref|ZP_08405384.1| ribonuclease E [Hylemonella gracilis ATCC 19624] gi|332041071|gb|EGI77438.1| ribonuclease E [Hylemonella gracilis ATCC 19624] Length = 952 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 192/517 (37%), Positives = 287/517 (55%), Gaps = 1/517 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q IQ+VIK Q LLVQ+ KEERGNKGAA+T+++SLAGRY VLM Sbjct: 70 FKEISRQYFAAGVSPSQAKIQDVIKEGQELLVQVEKEERGNKGAALTSFVSLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEALDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ + + S L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP Sbjct: 189 LWEAIDAASKASKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDVYEQAQQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHAARVKRYRDNAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRREVENRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR+R ++ E + C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + V DV +LLN+KR I + E + +++ +V L + +E+ Sbjct: 429 SQKDNTAAVHVQVPVDVASFLLNEKRNEITKIELKQRLNVLMVPNKSLETPNYKLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ + ++ I Q+ P Sbjct: 489 DDPRLDRVEASYAMAEEIEDPTAITRRSQEPTNKQTP 525 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA +++ + + G+ Sbjct: 62 EDRHGFLPFKEISRQYFAAGVSPSQAKIQDVIKEGQELLVQVEKEERGN 110 >gi|254491406|ref|ZP_05104585.1| ribonuclease, Rne/Rng family protein [Methylophaga thiooxidans DMS010] gi|224462884|gb|EEF79154.1| ribonuclease, Rne/Rng family protein [Methylophaga thiooxydans DMS010] Length = 810 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 209/563 (37%), Positives = 298/563 (52%), Gaps = 8/563 (1%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + ++ +Q+V+ Q L+VQI KEERGNKGAA+TT++SLAGRY VLMPN+ + Sbjct: 79 KKRENGDDSSGRFNVQDVLSVGQELVVQIEKEERGNKGAALTTFISLAGRYLVLMPNSPR 138 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 ISR+I + L++ R LEVP GMG+I+RTAG + E++ D EYL++LW + Sbjct: 139 AGGISRRIEGDDRAE-LQDALRQLEVPEGMGMIVRTAGVGKQTEELQWDLEYLVQLWTAI 197 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + AP LVY+E N+I RA+RD KDI EI+V + Y+ DFM+++MP Sbjct: 198 DVATKDRSAPFLVYQESNIIIRALRDYLRKDIGEILVDSPEVYQTGYDFMRMVMPHELSK 257 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y+D P+F R +E Q++S + EV LPS G ++I+ TEAL+SIDVNS R+ + I Sbjct: 258 FKLYQDKVPLFTRYQVESQIESAFRHEVRLPSGGALVIDPTEALISIDVNSARANKGGDI 317 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 E+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM +N R VE +L+E LK DRARVQ Sbjct: 318 EETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMGPSRNQREVENRLREHLKADRARVQ 377 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 VG IS FGLLEMSRQR+R ++ E+ ++C C G G++R S+ L++LR VEE + Sbjct: 378 VGRISRFGLLEMSRQRLRPALGEAHQEICPRCAGLGHVRGVESLGLAVLRLVEEEATKDR 437 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++V V ++LN KR + E R V I ++ L + IE+ Sbjct: 438 ITQLVVQLPVPVATFILNDKRMQVEAVEQRHSVKIVLIPNPHLDTPHYEIERIKDGNVKS 497 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-- 633 H++ S S D+ V +D+ +L P + V + K+ Sbjct: 498 EVSHQMIS-----SPDQETPVVLRDKPVLEQPAVTGISPAAPAPVVNKREQEQEKKPSLL 552 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 +R + + + Q D+ N E Sbjct: 553 KRLMNVLTGKAEEEETIETPKTEQKSEQDTTKRSQNRRSRGGRNNNGGNNSNNAERRKPR 612 Query: 694 IPPVSTPEMESSNSSSDPIVKKT 716 PE + P Sbjct: 613 RRNEKAPETAEAEEKQQPATPNK 635 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 55/78 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV ++ R+ +LD ++ ++Q KGNIY K+TRVEPSL+A FV+YG Sbjct: 2 KRILINATHEEELRVAMVDGQRLFDLDIDTPSREQKKGNIYKGKITRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFLP EI Y++ Sbjct: 62 AERQGFLPLKEISKSYFK 79 >gi|148244555|ref|YP_001219249.1| hypothetical protein COSY_0406 [Candidatus Vesicomyosocius okutanii HA] gi|146326382|dbj|BAF61525.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 573 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 159/633 (25%), Positives = 283/633 (44%), Gaps = 82/633 (12%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI+A+H EE RV ++++ ++ L+ E+ K+ KGNIY K++R+E SL+AAFVDYG Sbjct: 4 ILINATHSEEIRVGIIKNKKLTGLNIETSLNKKTKGNIYRGKISRIEQSLEAAFVDYGKE 63 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 + GFLPF EI Y ++ + L ++D + G I E Sbjct: 64 KQGFLPFKEIAETLYNNTKTEGEKL------------TISDVLKEGQKIIVQIEKEERGN 111 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 A S Y I + + + Sbjct: 112 KGAALST-----------------------------YINLAGAYMILMPNNPKSHGISRQ 142 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 + + + L +++ G++ +L + + + G Sbjct: 143 IVSSDRQSLKEIINRIILPKHSGLIIRTAGSGKSFEELQWEVDYLTDLWKSINTMALAHG 202 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304 ++ +I R +RD Sbjct: 203 APFLIYQESD---------------------------------------IIIRTLRDHLR 223 Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE-DPHPIFFRSGIEVQLDSLHQTEV 363 D +I+ + ++ AK+F+ ++P Y ++ ++ H +F GIE Q+ S+ EV Sbjct: 224 SDTDSVIIDELEAFQNAKEFVSFVLPHYLDRIKFFDVSEHSLFSHMGIETQVKSVFNREV 283 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 +L + ++ + TEAL SID+NS R+T+ I++TA TNLEAA+EIA QL+LRD+ GLI Sbjct: 284 SLRTGATIVFDPTEALTSIDINSARATKGADIKETAYNTNLEAAKEIAIQLQLRDIGGLI 343 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDM +++ S+EK +++++ DRAR+Q+G IS FGLLEMSRQR+ +SV ES K Sbjct: 344 VIDFIDMASEEHRVSIEKAMEKAISLDRARIQIGTISQFGLLEMSRQRLMNSVTESVEKP 403 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEY 542 CT C G G + ++AL+ILR +E + + + +V+ Y+LN+KR +++ Sbjct: 404 CTICHGRGTTPTIPTLALTILRQLENSCNAAKQTARLTIQSSIEVITYILNEKRQEVIKL 463 Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E + + I ++ + F I K + + ++ S Q + + + A Sbjct: 464 EDKHSIKITLLPNPYMQFPNFTINKQKWGKKSQHKSYQGISKPQHILVENGLANQAEIPA 523 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + + + + + + + + K++++ Sbjct: 524 INVNRPNTRVPEKKIFLFEKIKNTLFGKKKKQP 556 >gi|258621207|ref|ZP_05716241.1| ribonuclease E [Vibrio mimicus VM573] gi|258586595|gb|EEW11310.1| ribonuclease E [Vibrio mimicus VM573] Length = 819 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 198/642 (30%), Positives = 314/642 (48%), Gaps = 26/642 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAAEEIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + E ++ + + E + + Sbjct: 491 EEQDILSYL-----IPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAVPAPAP 545 Query: 632 RRRRRRRRPATDHHDAG---------------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + ++ A + ++ + +P N Sbjct: 546 KAKAETQQQVETAQPAQPGLFSRLFKAIANLFSPAPEAAKAEAAVVQSNEQEKPRRERNE 605 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + E + ++ P +K + Sbjct: 606 RNDRRRNPRDKNRRRGNEESSERNDKEGATNNRKPQDRKPKQ 647 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|261209962|ref|ZP_05924261.1| ribonuclease E [Vibrio sp. RC341] gi|260840908|gb|EEX67445.1| ribonuclease E [Vibrio sp. RC341] Length = 1030 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 191/518 (36%), Positives = 291/518 (56%), Gaps = 6/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G IR S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 428 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVRDG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + + +A + E + D I + Sbjct: 488 EEQDILSYLIPKKLEAMKEAEGKEVLDVDLKPKRIEEP 525 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 52/75 (69%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|315634771|ref|ZP_07890053.1| ribonuclease E [Aggregatibacter segnis ATCC 33393] gi|315476323|gb|EFU67073.1| ribonuclease E [Aggregatibacter segnis ATCC 33393] Length = 949 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 197/660 (29%), Positives = 323/660 (48%), Gaps = 34/660 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+++I Q ++VQ+ KEERGNKGAA+TT++SLAG Y V+MP Sbjct: 69 EIAREYFPADYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 129 NNPRAGGISRRIEGDERLE-LKDALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K Y +AK +KL+ P Sbjct: 188 WEAIKQASESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 248 FINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDINSARSTR 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE ++++++++DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C+G G IR S++LSILR +EE Sbjct: 368 ARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLLEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ + + YLLN+KR I E R V I VV + F + + Sbjct: 428 LKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHDVDIIVVPNEAMETPNFSVFRVRDG 487 Query: 572 QALVNTGHKVGS---------DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + + + + ++ +NIE + + + E Sbjct: 488 EEVNELSYNLAKLHQDQDETFAAEESLVSRNIEATPAETPAVESAAVSLAITMPAPEPVE 547 Query: 623 ES-------------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 ++ + ++ R + ++ + + + Sbjct: 548 RKVPKAPSLLSRLFAALKGLFASEPKQEEKNKKSRSNNRNGNNRNRRNQDRRNNRRVRNE 607 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + N + + S++ + ++R+ Sbjct: 608 NVENIIEEQSADKSEVRNRHQDRNAKRNRKPEVIEEIIKPESSTPVTEEKAEPAQRRQRR 667 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEIAREYF 75 >gi|326795263|ref|YP_004313083.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1] gi|326546027|gb|ADZ91247.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1] Length = 1095 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 216/632 (34%), Positives = 318/632 (50%), Gaps = 14/632 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 72 EISKTYFSKKSNSDGRLNIKDVLTEGQEVIVQVDKEERGNKGAALTTFVSLAGRYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE GL P G+I+RTAG R+ E++ D +YL L Sbjct: 132 NNPRAGGISRRIDGDDRTQ-LKEAMSGLSTPENGGLIVRTAGVGRSTEELQWDLDYLDTL 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ + A AP L+Y+E N++ RAIRD DI E+++ + Y++A +F+ +MP Sbjct: 191 WSSITKAASEKPAPFLIYQESNIVIRAIRDYLRDDIGEVLIDEKGAYQDAINFVMQVMPQ 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + ++QY D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 FKSRIKQYSDTTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM KN + VE ++K++L+ DR Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPLKNQKEVENRMKQALEADR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ E++ VC C G G+IR S+ALS+LR +EE Sbjct: 371 ARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLALSVLRLIEEEC 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + I V +LLN+KR I + E R V I +V + F +E+ Sbjct: 431 AKERTAQIRAILPVSVATFLLNEKRTNIAKIEKRNDVHIILVPNPHMETPHFTVERIRDD 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 A++ + + P ++A + + E V + Sbjct: 491 NAVITQDDSSYTLVETPDEAPYEPRQAVEQARPQAAVTSIAPKSPAPAPTPEPKKVEKTG 550 Query: 632 RRRRRRR-------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 R R T + S + +P H + G Sbjct: 551 LLTRIFRALFGATEEAETKKDSKPSTTTKSRSNQGTQGDRNKRSKPQRTNKHQKRDQGDE 610 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E S + E+ + P KK Sbjct: 611 RKQE-KPRSTRKTRREQAEAQVKTHAPQAKKK 641 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 41/76 (53%), Positives = 54/76 (71%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 3 RMLINATQQEELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGA 62 Query: 64 NRHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 63 ERHGFLPLKEISKTYF 78 Score = 37.3 bits (84), Expect = 8.6, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 2/166 (1%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + +K ++G + + QA + K + +A +SE+ Sbjct: 593 RSKPQRTNKHQKRDQGDERKQEKPRSTRKTRREQAEAQVKTHAPQAKKKAPQSEERSETK 652 Query: 613 EDIQDNIVSEES--TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + E+ RKR R +RR +A + ++ Q Sbjct: 653 RKATVEVAPEKKVPEVKERKRTRNENKRRNGKLRDEAELAKQENAKQEADAKEAAQIEAQ 712 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + A S +P +++ + ++ T Sbjct: 713 EGQRSDATSTDSASTKERKPRRSRRSRKSPRGDAAPTQAEATQPAT 758 >gi|326424118|ref|NP_761817.2| ribonuclease E [Vibrio vulnificus CMCP6] gi|319999500|gb|AAO11344.2| Ribonuclease E [Vibrio vulnificus CMCP6] Length = 1036 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 200/650 (30%), Positives = 321/650 (49%), Gaps = 29/650 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 191 WAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629 + + + + + E ++ + E + ++ Sbjct: 491 EEVDLLSYLL-----PKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQSVPAPAP 545 Query: 630 KRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K + G+ + ++ + + S + +E + E G Sbjct: 546 KAAVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVEAEKTERKDEREKGNRRQKR 605 Query: 689 NYDVSIP---------------PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + + K R ++RK Sbjct: 606 DRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDEAIKPRSQQKRK 655 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEER 109 >gi|294055263|ref|YP_003548921.1| ribonuclease, Rne/Rng family [Coraliomargarita akajimensis DSM 45221] gi|293614596|gb|ADE54751.1| ribonuclease, Rne/Rng family [Coraliomargarita akajimensis DSM 45221] Length = 579 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 161/578 (27%), Positives = 269/578 (46%), Gaps = 72/578 (12%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 LI S E RV L+D +E+ + E + G I+ K+ +EP L+AAFVD G + Sbjct: 66 LIINSEPLEKRVAQLKDGVLEKFEVERTGDAREVGAIFKGKIQNLEPGLKAAFVDIGQPK 125 Query: 66 HGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAP 125 + FL + +I P D+S+E V Sbjct: 126 NAFLHYWDILP-------------------------------------AAGDNSIEVVRD 148 Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185 + Q E+ ++ + I ++ ++VQI Sbjct: 149 NKSEKQRKREKEKVTIKD--------------------------IPKLYPIGTEIVVQIT 182 Query: 186 KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245 K + G KG TT ++L GR+ VLMP ISRKI + +R LK I R L +P GM Sbjct: 183 KGQIGTKGPRTTTNIALPGRFLVLMPYAG-TLGISRKIEDKKERSRLKGILRDLTLPEGM 241 Query: 246 GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK 305 GVI+RTAG + + RD L++ W+ + + + P +Y E +++ R +RD + Sbjct: 242 GVIIRTAGEGKKEHYFIRDLHILLKRWEVITQRMEETKKPACLYVEPDIVGRTVRDFLTE 301 Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365 D+ ++V ++ Y + + + P V+ ++D P+F R IE Q++ + V L Sbjct: 302 DVDRVMVDKKEDYDHVMEEVMKISPRSKSKVQLFKDDIPVFERFNIERQIEQTYMRTVPL 361 Query: 366 PSRGYVIINQTEALVSIDVNSGRSTRE-HCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424 PS G ++I +TEAL+SIDVN+G + +D LQ NLEAA EIARQ+RLR++ GL++ Sbjct: 362 PSGGEIVIEETEALISIDVNTGSHKNKSKDGKDFILQVNLEAASEIARQVRLRNIGGLVI 421 Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 +DFIDM+ KK+ +V ++++ + D+A+ + IS G+++M+RQR S C Sbjct: 422 MDFIDMKSKKDRNAVLQRMRREMATDKAKSHILPISTLGIMQMTRQRHSESHASGIYTDC 481 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-------NIIVHTHSDVVLYLLNQKRA 537 YC G G ++S ++++ I R + + + V + + L N+ Sbjct: 482 PYCNGRGSVKSSRTMSVEIQRRLISVIRHIRVRDGIDKEIQLRVLLNPTNLDRLRNEDED 541 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++E E +G +++ + F I Q Sbjct: 542 LLLEIEQSYGAALSFRADPIYHVENFKIIDIETGQEQR 579 >gi|153818441|ref|ZP_01971108.1| ribonuclease E [Vibrio cholerae NCTC 8457] gi|126511000|gb|EAZ73594.1| ribonuclease E [Vibrio cholerae NCTC 8457] Length = 963 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 202/664 (30%), Positives = 317/664 (47%), Gaps = 39/664 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I++V+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C CKG G IR S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I +V ++ F + + Sbjct: 431 LKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGH-------KVGSDSQAPSYDKNIECVWQDEAL----------------LPIPK 608 + + + D ++ +E + P + Sbjct: 491 EEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAE 550 Query: 609 SESLEDIQDNIVSEESTG---------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + ++Q + + D + Sbjct: 551 PQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDR 610 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D + N+ + P E N ++ P ++ Sbjct: 611 RRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPER 670 Query: 719 WKRR 722 RR Sbjct: 671 QDRR 674 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|53712844|ref|YP_098836.1| ribonuclease G [Bacteroides fragilis YCH46] gi|60681067|ref|YP_211211.1| putative ribonuclease E [Bacteroides fragilis NCTC 9343] gi|253563171|ref|ZP_04840628.1| ribonuclease G [Bacteroides sp. 3_2_5] gi|265762945|ref|ZP_06091513.1| ribonuclease G [Bacteroides sp. 2_1_16] gi|52215709|dbj|BAD48302.1| ribonuclease G [Bacteroides fragilis YCH46] gi|60492501|emb|CAH07271.1| putative ribonuclease E [Bacteroides fragilis NCTC 9343] gi|251946947|gb|EES87229.1| ribonuclease G [Bacteroides sp. 3_2_5] gi|263255553|gb|EEZ26899.1| ribonuclease G [Bacteroides sp. 2_1_16] gi|301162552|emb|CBW22099.1| putative ribonuclease E [Bacteroides fragilis 638R] Length = 524 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 259/580 (44%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G D H P +SL Sbjct: 60 VGY---------------------------------------EKDAFLHYLDLGPQFNSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPISKATLLPDLD------------------KDGTVANTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ +S AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W+ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEESITKVQKATKFPTLIYEETSRAVALL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E + E +D++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 V+ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT+ C C G G I+S ++ ++ + + +H H V YL + Sbjct: 421 NTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYVAAYLNQGLMSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYVFYDSHGEEIDMKEE 520 >gi|92113716|ref|YP_573644.1| ribonuclease E [Chromohalobacter salexigens DSM 3043] gi|91796806|gb|ABE58945.1| RNAse E [Chromohalobacter salexigens DSM 3043] Length = 1175 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 219/631 (34%), Positives = 334/631 (52%), Gaps = 7/631 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDFGAERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K+ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAGR+ VLMPN Sbjct: 72 EISREYFTKEPSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGRFLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I + LK+ L VP MGVI+RTAG R+ E++ D +YL+++W+ Sbjct: 132 PRAGGISRRIEGDDRAQ-LKDAMGQLTVPDKMGVIVRTAGIGRSPEELQWDMDYLVQVWE 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + E A AP L+Y E N+I RA+RD DI E+++ + + EA F++ +MPSY Sbjct: 191 AITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVHEEALHFIRQVMPSYQ 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ Y D P+F R IE Q+++ +Q EV LPS G V+I+ TEALVSID+NS R+TR Sbjct: 251 NKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEALVSIDINSARATRGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM KN R VE +++++LK DRAR Sbjct: 311 DIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQREVENRVRDALKLDRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGL+EMSRQR+R S+ E++ VC C G G IR S++LSI+R +EE ++ Sbjct: 371 VQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSISLSIMRLIEEEAMK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + I V YLLN+KR+ + + E R GV + ++ ++ + +++ Q Sbjct: 431 ERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQGVQVVLLPNPDMDTPHYDVQRLRDDQV 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS-ESLEDIQDNIVSEESTGVIRKRR 632 G + + + D+ + + +S+ S + Sbjct: 491 SEEDGQRSSFELPTTTELTQEPDPALDKPMQRAEAAVKSVAHNAPAPTSLQHDTAPPATP 550 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + + + PS +N ++GA T + Sbjct: 551 TPAPAADAPASTPAESGLFSRLVKGLGKLLNGEDSTSPSKQSNDQAQQSGASKTT--SEA 608 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + +S S D K+ + R+ Sbjct: 609 RRQRQGSDQSSTSRSDGDTGSKQRQNDDSRR 639 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y+ S R + + Q V + Sbjct: 62 AERHGFLPLKEISREYFTKEPSGRPNIKEVLKEGQEVIVQVDKEE 106 >gi|331005268|ref|ZP_08328660.1| Ribonuclease E [gamma proteobacterium IMCC1989] gi|330420945|gb|EGG95219.1| Ribonuclease E [gamma proteobacterium IMCC1989] Length = 902 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 212/569 (37%), Positives = 311/569 (54%), Gaps = 2/569 (0%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ PK + ++ I++V+K ++VQ+ KEERGNKGAA+TT++SLAGR VL Sbjct: 71 KEISREYFIKQPKDIEGRFKIKDVLKEGTEVIVQVDKEERGNKGAALTTFISLAGRCMVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN +G ISR+I L++ ++VP GM VI+RTAG R+ E++ D YL+ Sbjct: 131 MPNNPRGGGISRRIEGEER-NELRQTLSQIDVPKGMSVIVRTAGIGRSAEELQWDLNYLL 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 +LW +++ A NS APH +++E N+I RAIRD DI E+IV + Y A F++ +M Sbjct: 190 QLWGSIKTEADNSNAPHFIFQESNVIIRAIRDYLRPDIGEVIVDNIETYNLATAFVQQVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P+Y V+ YED P+F R IE Q+++ ++ EV LPS G ++I+ TEALV+ID+NS R+ Sbjct: 250 PNYKSKVKFYEDETPLFNRYQIESQIETAYEREVHLPSGGSIVIDVTEALVAIDINSARA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRD+ GLIV+DFIDM +N R+VE++++ +L Sbjct: 310 TKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMHPARNQRAVEERMQNALNM 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E+T+KVC C G G IRS S+ALSILR VEE Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGHGSIRSTKSIALSILRLVEE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + I T V YLLN+KR I EA I +V E+ + +++ Sbjct: 430 EAQKDRSAEIRAITPVKVATYLLNEKRKIIAGIEANNKARIVIVPNAEMVTPHYEVQRLR 489 Query: 570 PVQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 T +K+ + S + N +A + + E++ + Sbjct: 490 DDDGENFETSYKITGSQEDNSLEDNQPPAPLPQAAVQQVAPSQPVPESTELQEEKTDSLF 549 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + + N + + N N N + Sbjct: 550 TTLLAKIKAIFAPEPEKEEPKEETKKRYNNRNNRNGRNNNRNGRRNNRNDRNNDRNDGRN 609 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N E ++ + +D Sbjct: 610 NKSADSAADKKSENKTERNDNDKNNANQG 638 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 42/108 (38%), Positives = 64/108 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD E+ ++Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQPEELRVALVDGQWLYDLDIENRTREQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 +RHGFLP EI +Y+ D + K ++ + +E + Sbjct: 62 ADRHGFLPLKEISREYFIKQPKDIEGRFKIKDVLKEGTEVIVQVDKEE 109 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 43/164 (26%), Gaps = 8/164 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + GS + + + ++++ + + Sbjct: 622 ENKTERNDNDKNNANQGSSVNERNRNNRRRNSNRKPRNENADQAKTNDANNTATQQDGEK 681 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDV-------SSIQNVIDDSFDMYMEPSDITNHNL 678 + RR R+P G + S+ +N + + + N Sbjct: 682 SNENRPERRPNNRKPRNQQRSRGRKVETNGESSTESTRENTVKPNDNNDKANEAQANQQK 741 Query: 679 -LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ N S P V+ + +S N + + K Sbjct: 742 TVDTATQATKSNTTDSKPAVAETKADSVNKQTKTASDTVKQQKP 785 >gi|282889909|ref|ZP_06298447.1| hypothetical protein pah_c005o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500232|gb|EFB42513.1| hypothetical protein pah_c005o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 512 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 168/561 (29%), Positives = 279/561 (49%), Gaps = 65/561 (11%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ +E R LR+ ++ L E + ++Q+ GNIY VT + ++Q+AF+D Sbjct: 3 EILLNI-ESKELRYAHLRNGQLYNLIVERKRERQLAGNIYKGSVTNILHNIQSAFIDINE 61 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 +GF+ +I ++ + V D + D + Sbjct: 62 GENGFIHISDI-----------------------LENTKKFEQVYDMDFDLDYDIKGLDD 98 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 I+EV+K Q +LVQ Sbjct: 99 KQQKKQD---------------------------------------IEEVMKIDQPVLVQ 119 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKE G+KGA +T+ +SLAGRY VL+PN+S +SRKI + R+ LK++ R E+P Sbjct: 120 VVKEPIGSKGARLTSNISLAGRYLVLLPNSSHRG-VSRKIEDRNARERLKKLIRAFEMPT 178 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 MG+I RTA A T + + L+ W + E S P L+Y E +LIKRA+ Sbjct: 179 DMGLICRTASARATPEMLIAEATDLLSTWHTIMENFHKSSGPSLLYAESDLIKRAVITAV 238 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 K I+V Y+ K+ +A + Y D P+F R +E ++D + ++ Sbjct: 239 DKRFERILVDDYAVYQSCKNLYSRYASEHALRIEYYRDNVPMFERFNVEREIDKTLRRKI 298 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGL 422 LPS GY+ ++TEA+ +IDVNSGRS+ +E++ ++ NLEAA+EIARQLRLR++ GL Sbjct: 299 WLPSGGYLFFDRTEAMYTIDVNSGRSSNNKVDVEESLVRINLEAADEIARQLRLRNIGGL 358 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 ++ DFIDM +KN R V +LKE +K+D A+ + +S FGL+EM+RQR R S++++ Sbjct: 359 VICDFIDMRYRKNQRRVLDRLKECMKEDSAKCTILGMSEFGLVEMTRQRNRESLIQTIFT 418 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 C YC G G +++ SV++ I R++++ + + + H ++ YL + + +++ Sbjct: 419 TCPYCSGRGLVKTHESVSIEIERALKKAIAHNQQFALKLVVHPELDHYLASIDKRFLLKI 478 Query: 543 EARFGVSINVVIGIELADKLF 563 + + L F Sbjct: 479 AEGLNARLEFDVNDNLHLNEF 499 >gi|264677096|ref|YP_003277002.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2] gi|262207608|gb|ACY31706.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2] Length = 978 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 189/538 (35%), Positives = 292/538 (54%), Gaps = 6/538 (1%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 7 QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 66 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q I +VI+ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 67 FKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 127 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A S L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP Sbjct: 186 LWSAIDGAAKASKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQQFMAHVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ Sbjct: 246 EHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSVDVNSARAI 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D Sbjct: 306 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEEAKNRREVENRLRDALRQD 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR++ ++ E C C G+G+IR S AL ILR ++E Sbjct: 366 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQILRIIQEE 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + +V +LLN+KR+ I + E + V++ +V + + +E+ Sbjct: 426 SMKDNTAAVHCQVPVEVASFLLNEKRSEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 485 Query: 571 VQALVNTGHKVGSDSQAPSY-----DKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + + + P ++ E + ++ ++ I + + Sbjct: 486 DDSRLESMEASYKLADEPEEVTTVTRRSQEPTNKQTPVIKGVLPDAPAPIAEPRPPRQ 543 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 44/107 (41%), Positives = 63/107 (58%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG + Sbjct: 1 MLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGED 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 61 RHGFLPFKEISKQYFAEGVSPSQARINDVIREGQELIVQVEKEERGN 107 >gi|117921008|ref|YP_870200.1| RNAse E [Shewanella sp. ANA-3] gi|117613340|gb|ABK48794.1| RNAse E [Shewanella sp. ANA-3] Length = 1098 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 212/621 (34%), Positives = 315/621 (50%), Gaps = 10/621 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ + I E S+ +A D + Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+ Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LEVPAGMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A + AP L+++E N+I RAIRD +D+ EI++ + + EAK + L+ Sbjct: 189 HHWAAITEAAQSKPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + +K +A Y E + P P + Q + T Sbjct: 489 TDDEIDESSYKRIEQPEAKLY----EPRKLERTAAPAPALKGFTAPQKVEQAAAPTANKV 544 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + + + SD + + + + + + ++ Sbjct: 545 EATEPGFFSKLFSAIGAFFSSSDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTRNNQD 604 Query: 690 YDVSIPPVSTPEMESSNSSSD 710 D + P ++ S+D Sbjct: 605 ADKAKEGTREPRTRNAKKSAD 625 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|323499351|ref|ZP_08104327.1| ribonuclease E [Vibrio sinaloensis DSM 21326] gi|323315536|gb|EGA68571.1| ribonuclease E [Vibrio sinaloensis DSM 21326] Length = 1001 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 199/634 (31%), Positives = 318/634 (50%), Gaps = 15/634 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFDVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629 + + + + E ++ + E + SE + + Sbjct: 491 EEFDLLSYLL-----PKKLEAMKEAEGREAPEAEAKPKKLEEPVLKGFAAPSESAPTPPK 545 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNV--IDDSFDMYMEPSDITNHNLLENGAHGFT 687 + ++ + G+VS S + T + + + Sbjct: 546 PAPKATEKKAEKVEESQPGLVSRFFKALGSFLFGSSTEEEKVEEKKTQSDKKDGQRNNRN 605 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ + + N + K+ R KR Sbjct: 606 RRGRNDNRRRNSRDNRNDNRKDNRENKEARNDKR 639 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 Score = 48.4 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 42/145 (28%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 +T + + + S K+ + ++ + + D +++ + + +R Sbjct: 580 SSTEEEKVEEKKTQSDKKDGQRNNRNRRGRNDNRRRNSRDNRNDNRKDNRENKEARNDKR 639 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 RR+PA D ++ QN TN + E G +E Sbjct: 640 DNRRKPARDDSTNDNKANERKQQNRKPKQDRRNKRDDAKTNSKVAEEGLKLASEAQKAEK 699 Query: 695 PPVSTPEMESSNSSSDPIVKKTRWW 719 P S + + Sbjct: 700 PNRSEEKAAKVKERRQRRKLSKQVR 724 >gi|126668126|ref|ZP_01739088.1| Ribonucleases G and E [Marinobacter sp. ELB17] gi|126627396|gb|EAZ98031.1| Ribonucleases G and E [Marinobacter sp. ELB17] Length = 1092 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 207/619 (33%), Positives = 325/619 (52%), Gaps = 11/619 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------VE 150 + A+ D D+ I + ++ A I E S+ +A D ++ ++ Sbjct: 12 EELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDFGADRHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + P + + + I++VI Q ++VQ+ KEERGNKGAA+TTY+SLAGRY VLM Sbjct: 72 EISKEYFKKSPGQIEGKVNIKDVIAEGQEVIVQVDKEERGNKGAALTTYISLAGRYLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN ++ ISR+I + LKE ++VP MG+I+RTAG R E++ D +YL++ Sbjct: 132 PNNARAGGISRRIEGEERAQ-LKEAMNQVQVPKSMGIIVRTAGIGRNSEELQWDLDYLVQ 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ + + A AP L+++E N+I RA+RD +DI E+++ + + +F++ +MP Sbjct: 191 FWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHEDVLNFVRAVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T Sbjct: 251 TFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + H IE+TALQTNLEAAEEI RQLRLRD+ GLIV+DFIDM +N R VE K++E+L+ D Sbjct: 311 KGHDIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREVENKMREALEID 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQVG IS FGLLEMSRQR+R S+ E+ ++VC C+G G IR S+ALSI+R + E Sbjct: 371 RARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + V +LLN+KR + EA VSI +V ++ F I + Sbjct: 431 SSKDKTGEVRAVVPVSVATFLLNEKRKQLATIEANQEVSIVIVPVPQMETPHFEIIRMRD 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECV-WQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + ++ + V Q++ + +S+ V Sbjct: 491 DETGSEHVSSHQVAQEYSEREEEVADVTVQEKPVREQAAVKSVRPASPVPVPATKPAATP 550 Query: 630 KRRRRRRRRRP---ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + R + + + DS + + Sbjct: 551 AKAAAEKTRDEGMFSRLGRKIALFFNGEEESQPAADSSSNRNAKQAGGDDRSRQRPTSSR 610 Query: 687 TENYDVSIPPVSTPEMESS 705 + D V+ + + + Sbjct: 611 NDRQDRRKTRVARDDQQDT 629 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 42/78 (53%), Positives = 58/78 (74%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ R+ +LD ES ++Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 +RHGFLP EI +Y++ Sbjct: 62 ADRHGFLPLKEISKEYFK 79 >gi|145273|gb|AAA23443.1| RNase E [Escherichia coli] Length = 815 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 187/527 (35%), Positives = 290/527 (55%), Gaps = 9/527 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSR R+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRHRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR+ + E R GV +V ++ +++ + Sbjct: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVVRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + + +A + E + P + ++ D+ Sbjct: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|330869278|gb|EGH03987.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 685 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 221/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 668 EERPARTSRERKPREAR 684 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEE 103 >gi|167032491|ref|YP_001667722.1| ribonuclease [Pseudomonas putida GB-1] gi|166858979|gb|ABY97386.1| ribonuclease, Rne/Rng family [Pseudomonas putida GB-1] Length = 1086 Score = 299 bits (766), Expect = 9e-79, Method: Composition-based stats. Identities = 222/617 (35%), Positives = 315/617 (51%), Gaps = 9/617 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL VP MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ EA F++ +MP YA Sbjct: 191 AIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQRLRDDNP 490 Query: 574 LV-----NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 V + +AP V Q+ A+ P + + + V Sbjct: 491 EVLNNQSSYEIAAAETEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAPVA 550 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + + + N Sbjct: 551 PAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVAAEKPAAERSPRNEERRNGRQQSRNR 610 Query: 689 NYDVSIPPVSTPEMESS 705 N E Sbjct: 611 NGRRDEERKPREERAER 627 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 SERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEE 106 >gi|94676970|ref|YP_588881.1| ribonuclease E [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220120|gb|ABF14279.1| ribonuclease E [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 589 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 187/524 (35%), Positives = 278/524 (53%), Gaps = 7/524 (1%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151 + + ++ ++ + E E+ + Sbjct: 11 QHEELRIALVDGQKLYDLDIESLGHEQKKANIYKGIITRIEQSLEAAFVDHGAERHGFLP 70 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 K S E P + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 71 FKEISREYFPPNSTNKLNIKDVLREGQEIIVQIDKEERGNKGAALTTFISLAGSYLVLMP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 131 NNPRAGGISRRIEGESR-NELKEALSLLELPEGMGLIIRTAGIGKSAEALQWDLSFRLQH 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330 W ++++A + AP L+++E N++ RA RD DI EI++ AK + LL P Sbjct: 190 WQAIKKIANSRPAPFLIHQESNVLVRAFRDYLRPDIGEILIDNSNILDLAKKHITLLGRP 249 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 250 DFTSKIKFYNGETPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARST 309 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEA EEIARQLRLRDLAGLIV+DFIDM ++ R VE L++++++D Sbjct: 310 RGSDIEETAFNTNLEAVEEIARQLRLRDLAGLIVIDFIDMTPIRHQRLVENCLRDAVRQD 369 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLE+SRQR+ SS+ +S+ +C C G G IR S++LSILR +EE Sbjct: 370 RARIQIGRISRFGLLELSRQRLSSSLRDSSHHLCPRCGGTGTIRDNESLSLSILRVIEEE 429 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR I E R GV +V ++ + + + Sbjct: 430 TLKDNTHEVHAIVPVPIASYLLNEKRDAINAIEKRQGGVRAVIVPNDQMQTPHYIVLRRR 489 Query: 570 PVQALVNTGHKVGS----DSQAPSYDKNIECVWQDEALLPIPKS 609 + + + + D E D+ L Sbjct: 490 KGEKATTLSYLLPKLYCTAKMNLAEDIPNERKSSDKPYLAKQDK 533 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLI+A+ EE R+ ++ ++ +LD ES +Q K NIY +TR+E SL+AAFVD Sbjct: 1 MMKRMLINATQHEELRIALVDGQKLYDLDIESLGHEQKKANIYKGIITRIEQSLEAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +G RHGFLPF EI +Y+ P S + +K+ + D G+ Sbjct: 61 HGAERHGFLPFKEISREYF-PPNSTNKLNIKDVLREGQEIIVQIDKEERGN 110 >gi|289649338|ref|ZP_06480681.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 2250] Length = 1094 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 222/669 (33%), Positives = 327/669 (48%), Gaps = 62/669 (9%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 599 -----------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 ++E P+ + + + E G + R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 RR + + + + EP + + T Sbjct: 608 RRDEERKPREERAPREERAPREERAPREERTVREPREAREDSAPREERPARTSRERKPRE 667 Query: 696 PVSTPEMES 704 + Sbjct: 668 AREDRPVRE 676 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEE 103 >gi|146282970|ref|YP_001173123.1| ribonuclease E [Pseudomonas stutzeri A1501] gi|145571175|gb|ABP80281.1| ribonuclease E [Pseudomonas stutzeri A1501] Length = 1070 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 217/607 (35%), Positives = 321/607 (52%), Gaps = 32/607 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 27 EELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAERHGFLPLK 86 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 87 EISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 146 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL +PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 147 PRAGGISRRIEGEER-NELREALNGLNIPADMGLIVRTAGLGRSSEELQCDLDYLLQLWT 205 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 V++ + + AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 206 AVKDASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYA 265 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 266 SKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 325 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E+L+ DRAR Sbjct: 326 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRAR 385 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 +QVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 386 IQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 445 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 446 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 505 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST-------- 625 + G SQ+ + + + + + + + Sbjct: 506 EIIAGQASYEMSQSEAEEVQPVSSTRTLVRQEAAVKTAPQRSAPATSAAPAPAEAPVATP 565 Query: 626 --------------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + + ++PA+ QN DS + Sbjct: 566 AQEPSLFKGLIKSLVGLFAGKAEEPQAAAQVEKKPASARPQRNDERRSGRQQNRRRDSRN 625 Query: 666 MYMEPSD 672 E Sbjct: 626 GRDEERK 632 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 44/105 (41%), Positives = 60/105 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 17 KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFG 76 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y+ R + Q V + Sbjct: 77 AERHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEE 121 >gi|319943486|ref|ZP_08017768.1| ribonuclease E [Lautropia mirabilis ATCC 51599] gi|319743301|gb|EFV95706.1| ribonuclease E [Lautropia mirabilis ATCC 51599] Length = 1068 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 204/617 (33%), Positives = 298/617 (48%), Gaps = 60/617 (9%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + IQ+VI Q L+VQ+ KEERGNKGAA+TT +SLAGRY VLMPN +G +SR+I Sbjct: 86 KPLRIQDVISEGQELIVQVEKEERGNKGAALTTMISLAGRYVVLMPNNPRGGGVSRRIEG 145 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ L+E L+VP+GM +I RTAG R+ E++ D YL++LW + A ++ Sbjct: 146 EDRQE-LREAMDKLQVPSGMSLIARTAGIGRSVEELQWDLNYLLQLWQAIESAAKSAPGA 204 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y+E +L+ RAIRD + DI E+++ E Y++A FM +MP Y V+ Y D P+ Sbjct: 205 FLIYQESSLVIRAIRDYFTADIGEVLIDTEDIYQQATQFMSYVMPDYVARVKYYRDATPL 264 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R IE Q+++ + V LPS G ++I+ TEALV+IDVNS R+TR IE+TA +TN+E Sbjct: 265 FSRFQIEHQIETAYSRVVPLPSGGAIVIDHTEALVAIDVNSARATRGSDIEETAFRTNME 324 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEE+ARQ+RLRDL GLIV+DFIDME +N R VE+ LKE+L DRARVQ G IS FGL+ Sbjct: 325 AAEEVARQMRLRDLGGLIVIDFIDMESSRNQREVEQCLKEALSLDRARVQTGKISRFGLM 384 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+SRQR+R ++ E T C C G G IR S AL +LR ++E ++ + V Sbjct: 385 ELSRQRLRPALNEGTHITCPRCNGTGVIRDIESSALHVLRVLQEEAMKENTAAVHVQVPV 444 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 +V YLLN+KR I EAR V I ++ + L+ +E+ + T + + Sbjct: 445 EVATYLLNEKRTEIATLEARLKVEIVLIPNKSIETPLYSLERLKHDDERLLTYRASYAMA 504 Query: 586 QAPSYDKNIECVWQDEALLPIP-------------------------------------- 607 +A + + Sbjct: 505 EANDEENTYLANKFKQPGNRQEAVVKGITRDQPPAPPPARPAAAPAASSTPAASSTHGGL 564 Query: 608 -----------KSESLEDIQDNIVSEES----------TGVIRKRRRRRRRRRPATDHHD 646 + E + + G R R RR R ++ + Sbjct: 565 LDRILNLFGWGAAHGAETAETAERPSDDGRNRTARNAGNGTSRSERGNRRGERSDSEGRN 624 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + E SD E + + P + E + Sbjct: 625 GRRNERNGRSERTERAERTERAEASDNGKRTRGERSNGRQRDEARDTREPRESREGRDTR 684 Query: 707 SSSDPIVKKTRWWKRRK 723 + + R + + Sbjct: 685 DARQNGERADRNGRNER 701 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EE RV ++ R+ ++D ES ++ K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLFNATHSEELRVAIVDGQRLIDIDIESAGRESRKSNIYKGVVTRVEPSLEACFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQAL-LKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y++ + L +++ + + G+ Sbjct: 62 EDRHGFLPFKEISRSYFRQDVEGGKPLRIQDVISEGQELIVQVEKEERGN 111 >gi|320156797|ref|YP_004189176.1| ribonuclease E [Vibrio vulnificus MO6-24/O] gi|319932109|gb|ADV86973.1| ribonuclease E [Vibrio vulnificus MO6-24/O] Length = 1033 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 199/629 (31%), Positives = 318/629 (50%), Gaps = 14/629 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQI KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L++ Sbjct: 129 NNPRAGGISRRIEGDERTE-LKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 188 WAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629 + + + + + E ++ + E + ++ Sbjct: 488 EEVDLLSYLL-----PKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQSVPAPAP 542 Query: 630 KRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K + G+ + ++ + + S + +E + E G Sbjct: 543 KAAVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVEAEKTERKDEREKGNRRQKR 602 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + ES+ ++ R Sbjct: 603 DRNDRRRNNRDNSRESNRDRDGKRRQRNR 631 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TRVEPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEER 106 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 33/133 (24%) Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 S + +K +++ + + + S ES +RR+R R Sbjct: 577 SAEEKVEAEKTERKDEREKGNRRQKRDRNDRRRNNRDNSRESNRDRDGKRRQRNRDENVV 636 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 + D + + N + E G E S Sbjct: 637 ETQDEAIKPRSQQKRKQKPAQNKADNAVESKANAKVAEKGLQLAAEAQGASKQEGQKTPS 696 Query: 703 ESSNSSSDPIVKK 715 ++ +K Sbjct: 697 KAEKVKERRQRRK 709 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 37/142 (26%), Gaps = 5/142 (3%) Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 ++ + E + E K + + ++N + + R +RR+R R Sbjct: 577 SAEEKVEAEKTERKDEREKGNRRQKRDRNDRRRNNRDNSRESNRDRDGKRRQRNRDENVV 636 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-----ENGAHGFTENYDVSIPPVS 698 + S + + + + + + + A + S Sbjct: 637 ETQDEAIKPRSQQKRKQKPAQNKADNAVESKANAKVAEKGLQLAAEAQGASKQEGQKTPS 696 Query: 699 TPEMESSNSSSDPIVKKTRWWK 720 E + K R Sbjct: 697 KAEKVKERRQRRKLNKPVRVKD 718 >gi|327402189|ref|YP_004343027.1| ribonuclease, Rne/Rng family [Fluviicola taffensis DSM 16823] gi|327317697|gb|AEA42189.1| ribonuclease, Rne/Rng family [Fluviicola taffensis DSM 16823] Length = 515 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 155/559 (27%), Positives = 251/559 (44%), Gaps = 70/559 (12%) Query: 1 MANKMLIDASHVEETR-----VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55 M+ ++++D TR + +LRD ++ EL E G+IYL KV +V PSL Sbjct: 1 MSLELVVD------TRDGGVWLALLRDGKLIELHQEQGSTDFAVGDIYLGKVRKVVPSLN 54 Query: 56 AAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIP 115 AAFVD G + FL +L++ P + Sbjct: 55 AAFVDVGYEKDAFLHYLDLGPQF------------------------------------- 77 Query: 116 NDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIK 175 + Q + + D+ + + + ++ Sbjct: 78 -QSLNKFTKDTLQGKQNVSDLLYFKSEKDIPKDGKITE-------------------ILS 117 Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +LVQ+ KE +KG ++ L+LAGRY VL+P + K + + + + Sbjct: 118 TTSPILVQVAKEPISSKGPRLSAELTLAGRYLVLVPFSEKVSISQKIKSQEERDRLRR-- 175 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 P GVI+RT ++ I +D LM W + + P V E + Sbjct: 176 LMDDIRPKNFGVIIRTVAENKKVEAIDQDLRNLMEKWKTMHANLKQATPPRRVLGEIDKT 235 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 +RDL D S I VS EK E KD++ + P +I++ Y+ IF R GI Q+ Sbjct: 236 SSILRDLLNADFSNIHVSDEKLMGELKDYISGIAPGREKILKLYDGKLNIFERFGINKQI 295 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++ +V LPS GY+II TEA+ +DVNSG E AL TN+EAAEEIAR L+ Sbjct: 296 KTMFGKKVPLPSGGYLIIEHTEAMHVVDVNSGNRKGADGQESNALATNVEAAEEIARVLQ 355 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LRD+ G++ +DFIDM +K+NN+ + +KLKE ++ DRA+ + S FG++E++RQR+R Sbjct: 356 LRDMGGIVCIDFIDMHDKENNKDLFEKLKEFMRSDRAKHNILPPSKFGVVEITRQRVRPE 415 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 +T++ C CKG G +++ A I ++ L I + H + Y Sbjct: 416 TDINTSETCPTCKGTGEVQASILFAEEIEMNLNFLLSDKKEKKISLLVHPYLEAYFKKGF 475 Query: 536 RATIVEYEARFGVSINVVI 554 + ++ ++ ++V Sbjct: 476 ISKQWKWFLKYKKWVDVRG 494 >gi|257487559|ref|ZP_05641600.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 700 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 668 EERPARTSRERKPREAR 684 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|301382848|ref|ZP_07231266.1| ribonuclease E [Pseudomonas syringae pv. tomato Max13] gi|302062846|ref|ZP_07254387.1| ribonuclease E [Pseudomonas syringae pv. tomato K40] gi|302131354|ref|ZP_07257344.1| ribonuclease E [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331019165|gb|EGH99221.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1109 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598 + + AP + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 547 Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + + + + + + +++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 607 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 R + + E + E+ P Sbjct: 608 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 667 Query: 698 STPEMESSNSSSDPIV 713 T + + Sbjct: 668 RTSRERKPREAREDRP 683 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|330966257|gb|EGH66517.1| ribonuclease E [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1112 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 218/608 (35%), Positives = 325/608 (53%), Gaps = 4/608 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + + A + + I + L ++ + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPAEVAAPAPTP 547 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 P+ + + + + + + +P+ E +G ++ + Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 607 Query: 694 IPPVSTPE 701 + Sbjct: 608 NRRDEERK 615 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|156975191|ref|YP_001446098.1| ribonuclease E [Vibrio harveyi ATCC BAA-1116] gi|156526785|gb|ABU71871.1| hypothetical protein VIBHAR_02918 [Vibrio harveyi ATCC BAA-1116] Length = 1035 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 194/538 (36%), Positives = 293/538 (54%), Gaps = 11/538 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ +KL+ P Sbjct: 191 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FISRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + E ++ A + I E + + T Sbjct: 491 EEFDLLSYLL-----PKKLEAMKEAEGKEPAEVDIKPKRIEEPVLKGFAAPTQTAPAP 543 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 37/130 (28%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + +Q P + + A +E+ + + ++ Sbjct: 652 KQQNRNQKRKPRAQQAEKAQEPKANAKVAEKGLQLAAEARTGTEAKPEESKAKSNAKAEK 711 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 V +R+RR+ + A ++ I ++ + +E ++ Sbjct: 712 VKERRQRRKLNKSVRVKDQQAAEKAEQEVPVQTIVEAVEAPVEKPVEAAAEAQQDNKAES 771 Query: 687 TENYDVSIPP 696 + + P Sbjct: 772 KQRRNRRSPR 781 >gi|260776341|ref|ZP_05885236.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450] gi|260607564|gb|EEX33829.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450] Length = 973 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 198/633 (31%), Positives = 316/633 (49%), Gaps = 12/633 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPDGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK L++P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALDTLDLPKGMGLIVRTAGVGKSAEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + + AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WGAIKQASDANPAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIQLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+++++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR +I E V I VV ++ F + + Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSINHIERIQEVKITVVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + E ++ A + + E + + K+ Sbjct: 488 EEFDLLSYLL-----PKKLESMKEAEGREVAEPEVKPKKLEEPALKGFAAPAQSAPAPKQ 542 Query: 632 RRRRRR-RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ ++ G+VS S + E + + N Sbjct: 543 PVKKAPEKKSEPRDEKPGLVSRFFKALGSFLFSSEPEKEQVEEKQEKAAKKDGQRNNRNR 602 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ N + + R +R+ Sbjct: 603 RNRNDQRRRNSRDNRNENREDKRDNKRNKPQRE 635 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAREYFPDGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106 Score = 44.2 bits (102), Expect = 0.073, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 47/157 (29%), Gaps = 5/157 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-----SESLEDIQDNIV 620 E+ ++ ++ P D+ + +A + +E+ +D + N Sbjct: 635 ERDEAANENKAASNERKQQNRKPKQDRRNKQRDDAKASKVAEEGLKLAAEAQKDDKPNRA 694 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E++T V +R+RR+ ++ A + Q + + + ++ E Sbjct: 695 EEKTTKVKERRQRRKLSKQVRVKDQKAKAEAVEEVKQVKAEAVAEAIEQSTEEVAAEDAE 754 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + +P + Sbjct: 755 QPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKG 791 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 12/124 (9%), Positives = 35/124 (28%), Gaps = 4/124 (3%) Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD---- 652 + + P+ E E +N + ++ ++ RR + D + V + Sbjct: 622 EDKRDNKRNKPQRERDEAANENKAASNERKQQNRKPKQDRRNKQRDDAKASKVAEEGLKL 681 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + Q + + ++ V + + + ++ I Sbjct: 682 AAEAQKDDKPNRAEEKTTKVKERRQRRKLSKQVRVKDQKAKAEAVEEVKQVKAEAVAEAI 741 Query: 713 VKKT 716 + T Sbjct: 742 EQST 745 >gi|74318455|ref|YP_316195.1| RNAse G [Thiobacillus denitrificans ATCC 25259] gi|74057950|gb|AAZ98390.1| ribonuclease E and G [Thiobacillus denitrificans ATCC 25259] Length = 483 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 121/565 (21%), Positives = 223/565 (39%), Gaps = 85/565 (15%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + +ETRV VL V+EL E + + NIY+ +V RV P +Q+AF+D Sbjct: 1 MSEEILVNVT-PQETRVAVLHLGAVQELHIERAKCRGLVSNIYMGRVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +I E + + G + Sbjct: 60 IGLERAAFLHVADI----------------WEERHNGETERPIEQILHEGQNLMVQVIKD 103 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A S + +++ + E+ ++ +++ Sbjct: 104 PIGTKGARLSTQISFAGRYLVYLPQETHIGISQKIEGEEEREQLRQKLHQ---------- 153 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L+P + G I R + + + L Sbjct: 154 ----------------------------LIPQDATGGFIVRTMAETAEDAEMLADIDYLR 185 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +++ G + +D + +R+ + Sbjct: 186 RLWSS---IQSRGNCVVPCLLYQDLDLSLRVLRDFVNR---------------------- 220 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + I++ + Y+ +F + + ++ Y P+F IE ++ Sbjct: 221 -----DTTRILIDSRETYQRMAEFAQNYTHAVLDKLQHYGADRPLFDLHAIEDEIAKALG 275 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY+II+QTEAL ++DVN+G +DT +TNLEAA+ IARQLRLR+L Sbjct: 276 RRVDLKSGGYLIIDQTEALTTVDVNTGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLG 335 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+ ++ +V +LK++L +D R V S GL+EM+R+R R S+ Sbjct: 336 GIIIIDFIDMDNVEHQDAVLTELKKALTRDPTRTTVSGFSTLGLVEMTRKRTRESLAHVL 395 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G G I++ +V +LR + Q+ A + V+ L+++ ++ Sbjct: 396 CEPCPTCAGRGEIKTAQTVCYDVLREILREARQFDAREYRILAAQSVIDLFLDEESGSLA 455 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 + G +++ + + + I Sbjct: 456 QLIDFIGKPVSLQVETTYPQEQYDI 480 >gi|90021266|ref|YP_527093.1| RNAse E [Saccharophagus degradans 2-40] gi|89950866|gb|ABD80881.1| RNAse E [Saccharophagus degradans 2-40] Length = 968 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 206/567 (36%), Positives = 302/567 (53%), Gaps = 16/567 (2%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ PK + IQ+V+K ++VQ+ KEERGNKGAA+TT++SLAGRY VL Sbjct: 71 KEISREYFAKQPKDIDGRIRIQDVVKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK+ ++VPAGMG+I+RTAG R E++ D YL Sbjct: 131 MPNNPRAGGISRRIDGDDRTE-LKDALSQIDVPAGMGIIVRTAGVGRRAEELQWDMNYLA 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 +LW +++ A AP +++E N+I RAIRD DI E+IV + Y A F++ +M Sbjct: 190 QLWASIKTAAEEKTAPEFLFQESNVIIRAIRDYLRPDIGEVIVDNQDAYNLATAFVEQVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P+Y V+ YE+P P+F R IE Q+++ + EV LPS G ++I+ TEAL+SID+NS R+ Sbjct: 250 PNYRSKVKLYEEPLPLFNRFQIESQIETAFEREVKLPSGGSIVIDVTEALISIDINSSRA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM+ +N R VE +++++L+ Sbjct: 310 TKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQREVENRMRDALEM 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E+T+KVC C G G IR S+ALSILR VEE Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSIALSILRLVEE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + I V YLLN+KR I E R I ++ ++ F +++ Sbjct: 430 EAQKERSAEIRAVVPVAVATYLLNEKRKVISGIEERQKTRIVIIPSEKMTTPHFDVQRLR 489 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQ---------------DEALLPIPKSESLED 614 + + Q +K + A L Sbjct: 490 DDDVVSSEISYKIEVPQGEDEEKIQDDAAALAKLPRPAVQAIPPAQPAPEAPKPDSLLTK 549 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 I + T +++ + R + + + + + D Sbjct: 550 ILKKLKELFKTDDKKRKNTSKNSRGQQRRRGNNSQNNRNRNRNRNGRGNDNRNKNRDDEI 609 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPE 701 NL ++ + P+ Sbjct: 610 TDNLSSRTKSDQSQQGQGPSSDDNRPD 636 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ + +LD E+ ++Q K NIY ++TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQPEELRVALVDGQWLYDLDIENRLREQKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 SERHGFLPLKEISREYF 78 >gi|289624527|ref|ZP_06457481.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 693 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 221/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 668 EERPARTSRERKPREAR 684 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIIQVEKEE 103 >gi|213969772|ref|ZP_03397907.1| RNAse E [Pseudomonas syringae pv. tomato T1] gi|213925580|gb|EEB59140.1| RNAse E [Pseudomonas syringae pv. tomato T1] Length = 1112 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 12 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 191 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 431 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 490 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598 + + AP + Sbjct: 491 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 550 Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + + + + + + +++ R R Sbjct: 551 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 610 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 R + + E + E+ P Sbjct: 611 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 670 Query: 698 STPEMESSNSSSDPIV 713 T + + Sbjct: 671 RTSRERKPREAREDRP 686 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 62 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 106 >gi|182677923|ref|YP_001832069.1| ribonuclease [Beijerinckia indica subsp. indica ATCC 9039] gi|182633806|gb|ACB94580.1| ribonuclease, Rne/Rng family [Beijerinckia indica subsp. indica ATCC 9039] Length = 1005 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 288/528 (54%), Positives = 363/528 (68%), Gaps = 8/528 (1%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV- 149 + + A ++ V P + E +E ++ V + Sbjct: 233 ENDEAPSEELPFNATELAGTAVAAPEAIPTRDDFGNDFNDDEGDEGDETEEEDEQVEQIG 292 Query: 150 -EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 + +++RQY IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAGRYSV Sbjct: 293 GDSDAMEEAMHRAPRYRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSV 352 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 LMPNT++G ISRKIT+ DR+ LK IA+ LEVP GMGVILRTAGA+RTK E+KRDFEYL Sbjct: 353 LMPNTARGGGISRKITDAGDRQRLKAIAQELEVPEGMGVILRTAGAARTKAEVKRDFEYL 412 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 +R+W+ VRE+ L S AP LVYEEG+LIKRAIRDLY KDI EIIVSGE GYREAKDFM++L Sbjct: 413 LRMWETVREMTLKSTAPTLVYEEGSLIKRAIRDLYNKDIDEIIVSGEAGYREAKDFMRML 472 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 MPS+A+ V+ Y DP PIF ++G E QLD++ +VTL S GY++INQTEALV+IDVNSGR Sbjct: 473 MPSHAKSVQLYRDPQPIFAKAGAEAQLDAMFSNQVTLRSGGYLVINQTEALVAIDVNSGR 532 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 STREH IEDTA++TNLEAA+EIARQLRLRDLAGLIV DFIDMEE +NNR+VE++LKE+LK Sbjct: 533 STREHNIEDTAVRTNLEAADEIARQLRLRDLAGLIVADFIDMEEGRNNRAVERRLKEALK 592 Query: 449 KDRARVQVGAISNFGLLEMSRQRI--RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 DRAR+QVG IS+FGLLEMSRQ R+ V E +T +C +C GAG +RS SS+AL +LR Sbjct: 593 NDRARIQVGRISHFGLLEMSRQ--RIRTGVFEGSTVICPHCLGAGMVRSTSSIALHVLRL 650 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF-YI 565 +E+ L++ A++I V T + + LY+LNQKR + E E RFGVSI V L + + Sbjct: 651 LEDALIKNAAYDITVKTRTVIALYILNQKRTNLRELEQRFGVSITVAADESLTGMTYHAL 710 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 E+G + + A + + E + EA P S S E Sbjct: 711 ERGELAS-GTKLPVRETAIGPADIFPLDEEEEIEMEAEELEPVSGSDE 757 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 85/172 (49%), Positives = 99/172 (57%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLIDASH EETRVVVLR NRVEE DFES KKQ++GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP DRQAL++E AQ + + D + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQHEEDEEPQAPRRSRRYRRGDRNG 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE 172 + A + S + + + P+ + Sbjct: 121 QRAAEKRRNEDDVLALSPVLPEAVEPAPDQAEMTDEPQAFYTADSTDHFPHF 172 >gi|327481321|gb|AEA84631.1| ribonuclease E [Pseudomonas stutzeri DSM 4166] Length = 1052 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 217/607 (35%), Positives = 320/607 (52%), Gaps = 32/607 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 9 EELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL +PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLNIPADMGLIVRTAGLGRSSEELQCDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 V++ + + AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AVKDASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E+L+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 +QVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 IQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 428 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST-------- 625 + G SQ+ + + + + + + Sbjct: 488 EIIAGQASYEMSQSEAEEVQPVSSTRTLVRQEAAVKTAPQRSAPATSAAPPPAEAPVATP 547 Query: 626 --------------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + + ++PA+ QN DS + Sbjct: 548 AQEPSLFKGLIKSLVGLFAGKAEEPQAAAQVEKKPASARPQRNDERRSGRQQNRRRDSRN 607 Query: 666 MYMEPSD 672 E Sbjct: 608 GRDEERK 614 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 44/103 (42%), Positives = 59/103 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y+ R + Q V + Sbjct: 61 RHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEE 103 >gi|28870994|ref|NP_793613.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854243|gb|AAO57308.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 1128 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 220/676 (32%), Positives = 323/676 (47%), Gaps = 60/676 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 28 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 88 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 266 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 387 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVW-- 598 + + AP + Sbjct: 507 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEVAAPAPTP 566 Query: 599 ---------------------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + + + + + + +++ R R Sbjct: 567 APVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVVEKPAAEQRPARNEERRNGRQQSRGRN 626 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 R + + E + E+ P Sbjct: 627 NRRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREESAPREERPA 686 Query: 698 STPEMESSNSSSDPIV 713 T + + Sbjct: 687 RTSRERKPREAREDRP 702 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 18 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 78 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122 >gi|255008356|ref|ZP_05280482.1| putative ribonuclease E [Bacteroides fragilis 3_1_12] gi|313146080|ref|ZP_07808273.1| ribonuclease G [Bacteroides fragilis 3_1_12] gi|313134847|gb|EFR52207.1| ribonuclease G [Bacteroides fragilis 3_1_12] Length = 524 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 258/580 (44%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G D H P +SL Sbjct: 60 VGY---------------------------------------EKDAFLHYLDLGPQFNSL 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ ++ + + + + +K Q + Sbjct: 81 EKYVKQTLSDKKKLNPISKATLLPDLD------------------KDGTVANTLKVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQIVKE KG +T+ +S AGRY VL+P K + ++ + + Sbjct: 123 VVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W+ + P L+YEE + + Sbjct: 181 KPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEESITKVQKATKFPTLIYEETSRAVALL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E + E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIHVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 V+ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +T + C C G G I+S ++ ++ + + +H H V YL + Sbjct: 421 NTMETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKKFSLHIHPYVAAYLNQGLMSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 KRKWQMKYGFGIKIIPSQKLAFLEYVFYDSHGEEIDMKEE 520 >gi|157375769|ref|YP_001474369.1| ribonuclease [Shewanella sediminis HAW-EB3] gi|157318143|gb|ABV37241.1| ribonuclease, Rne/Rng family [Shewanella sediminis HAW-EB3] Length = 1201 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 201/647 (31%), Positives = 319/647 (49%), Gaps = 21/647 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I E S+ +A D ++ Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGADRHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+K Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK LEVP GMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAAMSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLE 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W ++E + AP L+++E N+I RAIRD +D+ E+++ + + +AK + L+ Sbjct: 189 HHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVALVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + ++QY+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+E+ARQLRLRDL GL+V+DFIDM ++ R VE ++++++ Sbjct: 309 TKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVVRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + +K+ +A Y+ S +++++ ++ Sbjct: 489 KDDQISESSYKLLDQPEAKLYEPRKLERAAPPQPALKGFSAPVKEVEKPSSIKKDVKTES 548 Query: 630 KRRRRRR---------------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 K+ + D + N + + D Sbjct: 549 KKDAEPGLISKLFSAISALFKPEEKKEEPKKKPQSNRDSQNRNNRRNTRRNDNRRNRDDK 608 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + ++ D + ++ + + + +R Sbjct: 609 DQASDKGARNSRNKSADSAKSDKVEKQVRGKDEQAKRQSRNDSKSRR 655 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +RHGFLP EI +Y+ Sbjct: 62 ADRHGFLPLKEIAREYF 78 Score = 40.7 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 38/144 (26%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + AP +I+ +A S +++ E+ +R Sbjct: 759 TETLEAKVEAKVEQTAPVAVDSIQTTPVTDADQVEISSSEEVEVEATDDKEQREPREGQR 818 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R RR R D + + E N + + + Sbjct: 819 RSRRSPRHLRAAGQRRRRDEDTEGESSSDAAPAFVSNETEVENQANETKAASVAVSTPAQ 878 Query: 692 VSIPPVSTPEMESSNSSSDPIVKK 715 P + + + +++ K Sbjct: 879 PETPEIPAEDTQKADTEVKSEATK 902 >gi|91789510|ref|YP_550462.1| ribonuclease E [Polaromonas sp. JS666] gi|91698735|gb|ABE45564.1| RNAse E [Polaromonas sp. JS666] Length = 1041 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 187/517 (36%), Positives = 283/517 (54%), Gaps = 1/517 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q I +VI+ Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQYFAQGVPVSQARINDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEAMDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + L+Y+E +L+ RAIRD + DI +I+ + Y +A+ FM +MP Sbjct: 189 LWTAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQARQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR+R ++ E + C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRVIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ + +++ DV +LLN+KR+ I + E + +++ +V L + +E+ Sbjct: 429 SLKDSTASVLCQVPVDVASFLLNEKRSEIGKIELKQRINVLLVPNKTLETPNYRLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ + + Q++ P Sbjct: 489 DDPRLDNIEASYKLADEVEDPTTVTRRSQEKHNKQEP 525 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML++A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLVNATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ QA + + + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFAQGVPVSQARINDVIREGQELLVQVEKEERGN 110 >gi|326562172|gb|EGE12500.1| ribonuclease E [Moraxella catarrhalis 7169] Length = 1164 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 199/555 (35%), Positives = 303/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + E Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P+ P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPIPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|296113831|ref|YP_003627769.1| ribonuclease E [Moraxella catarrhalis RH4] gi|295921525|gb|ADG61876.1| ribonuclease E [Moraxella catarrhalis RH4] Length = 1164 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + E Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKSDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|17546916|ref|NP_520318.1| ribonuclease G [Ralstonia solanacearum GMI1000] gi|17429216|emb|CAD15904.1| probable ribonuclease g (rnase g) (cytoplasmic axial filament protein) [Ralstonia solanacearum GMI1000] Length = 489 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 138/567 (24%), Positives = 233/567 (41%), Gaps = 83/567 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL +I HP D + Sbjct: 60 IGLERAAFLHVADIWHP------------------------------REAKDAPAAPHVA 89 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 +E+ + I +S + G + +P + I K Sbjct: 90 IEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLP----QDPHIGISQKIGN- 144 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + +E + + ++P +G I R I + L L Sbjct: 145 ---ETDREALRQRV-------------TRMVPADERGGFIVRTIAEEATDEELANDVAYL 188 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 +R A AP ++Y++ NL +R + Sbjct: 189 RKIW-----------------------------ATIRHNATTLPAPSILYQDLNLAQRVL 219 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD D I + + Y++ +F + P+ + Y PIF IE +++ Sbjct: 220 RDFVTDDTRSIQIDSRENYQKLIEFAQEYTPAVVERLTHYTGERPIFDLYNIEAEVERAL 279 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDME ++ +V +L+ +L +DR R+ V + S GL+EM+R+R R S+ Sbjct: 340 GGIIIIDFIDMESGEHRDAVLAELRRALARDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C+G G +++ +V ILR + Q+ + V+ L ++ + Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459 Query: 540 VEYEARFGVSINVVIGI-ELADKLFYI 565 G I++ + + + + I Sbjct: 460 AMLGDFIGKPISLQVESAAASQEQYDI 486 >gi|326564464|gb|EGE14690.1| ribonuclease E [Moraxella catarrhalis 46P47B1] Length = 1161 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + E Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|300716226|ref|YP_003741029.1| ribonuclease E [Erwinia billingiae Eb661] gi|299062062|emb|CAX59178.1| Ribonuclease E [Erwinia billingiae Eb661] Length = 1277 Score = 298 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 189/530 (35%), Positives = 285/530 (53%), Gaps = 9/530 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPSNYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + M+ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALSALELPEGMGLIVRTAGVGKSAEALQWDLSFRMKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 WD +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WDAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+D+IDM ++ R+VE +L+E++++D Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVENRLREAVRQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 431 ALKENTKEVHAIVPVQIASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMQTPHYSVLRVR 490 Query: 570 PVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + + + E + P + + D Sbjct: 491 TGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPDAPPA 540 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEISREYF 78 >gi|326568396|gb|EGE18476.1| ribonuclease E [Moraxella catarrhalis BC7] Length = 1164 Score = 298 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 199/555 (35%), Positives = 303/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + E Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P+ P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPIPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|326574311|gb|EGE24258.1| ribonuclease E [Moraxella catarrhalis O35E] Length = 1164 Score = 298 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 200/555 (36%), Positives = 304/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + GE Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDGENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P+ P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPIPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|148652291|ref|YP_001279384.1| ribonuclease [Psychrobacter sp. PRwf-1] gi|148571375|gb|ABQ93434.1| RNAse E [Psychrobacter sp. PRwf-1] Length = 1368 Score = 298 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 199/582 (34%), Positives = 311/582 (53%), Gaps = 29/582 (4%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R+ I+++IK L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN KG ISR+I Sbjct: 81 NPREENIRKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPKGGGISRQI 140 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + + L++P GM VI+RTAG +T+ +++ D +L+ +W+ +++ Sbjct: 141 SGKLREDMKR-MLGNLDLPKGMSVIVRTAGIGKTQEDLQHDLNHLLNIWNAIQDQNKKYA 199 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 +P LV++E ++ RA+RD DI+EI + E+ + EA+ F+K +MP+ +R+Y D Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEAETFIKAVMPTQIDKLRKYTDFE 259 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 P+F +E Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+ + +TA TN Sbjct: 260 PMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGADVAETAYHTN 319 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L E+ K DRARVQ G IS FG Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVEKRLVEATKYDRARVQFGEISRFG 379 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L+EMSRQR+R S+ EST +C C G G IR S++LSI+R +E+ L+ + Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQTALKERHGEVQAEV 439 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI------------EKGSPV 571 +D+ +LLN+KR ++V E G I ++ L F I E+ + Sbjct: 440 PTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHLESPNFNIHFNHHGFAPASYERVTDT 499 Query: 572 QALVNTGHKVGSD-SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 Q +G D A S + V Q P +++ + + + K Sbjct: 500 QQQETSGLGYEVDWQTAESERPEQQPVRQPRKTAPQASADTSKPAEAAKAATPVANTAAK 559 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + +S++ + S + + ++ GA Sbjct: 560 PQQPAEAQVEQAKPAAVAWLSNLFAPTPQAQMSATVSSADAAQAIEAIVNTGAQSRGAFG 619 Query: 691 D---------------VSIPPVSTPEMESSNSSSDPIVKKTR 717 + P + E +NS+ D + Sbjct: 620 QVSAAPAAAPVASATVAAKPASAPTASEQANSADDTETDNDK 661 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + + N + + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 R GFLP EI +Y + + R+ +++ + + G+ Sbjct: 62 SKRQGFLPVREIASEY--LSGNPREENIRKLIKEGDELIVQVEKEERGN 108 >gi|326576219|gb|EGE26134.1| ribonuclease E [Moraxella catarrhalis CO72] Length = 1164 Score = 298 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + E Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|326566215|gb|EGE16367.1| ribonuclease E [Moraxella catarrhalis 103P14B1] Length = 1164 Score = 298 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 199/555 (35%), Positives = 302/555 (54%), Gaps = 24/555 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK ++VQ+ KEERGNKGAA+++++SLAGRY VLMPN K ISR+I+ V Sbjct: 87 IKQLIKEGDEIIVQVEKEERGNKGAALSSFISLAGRYLVLMPNNPKAGGISRQISGKVRE 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + K+I GL +P M VI+RTAG + +++ D ++L+ +W +++E +P LV+ Sbjct: 147 EM-KQIIAGLNLPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E ++ RA+RD DI E+ + E Y EA +F+K +MP+ +R+Y D P+F R Sbjct: 206 QEAGVVTRAVRDYLRDDIGEVWIDSENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARF 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GIE Q+++ +Q EV LPS G ++I+QTEALV+ID+NS +ST+ + +TA TNLEAA+E Sbjct: 266 GIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAETAYHTNLEAADE 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM + ++ + VEK+L E+ + DRARVQ IS FGL++MSR Sbjct: 326 IARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ EST +C C G G IR S++LSI+R +E+ L+ I +D+ Sbjct: 386 QRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERMGEIQAEVPTDIAA 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +LLN+KR ++V E G I ++ L F + D APS Sbjct: 446 FLLNEKRESLVYLEQDSGARITILPHAHLESPNFSL--------------HFNPDGFAPS 491 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + I + E + + D + + + + ++ P + Sbjct: 492 SYERIADTEEKENIDRGYEVNWQTDHEKSDSNRWQKPDNKPIKKNTTDSEPKPTKPEPQA 551 Query: 650 VSDVS-----SIQNVIDDSFDMYMEP---SDITNHNLLENGAHGFTENYD-VSIPPVSTP 700 V+ +S Q + S + N + GA G N S P P Sbjct: 552 VAWLSNLFAPKPQAKVAGSLGTADAALAIEALVNGGAVSLGAAGRMANIQAPSAEPTPRP 611 Query: 701 EMESSNSSSDPIVKK 715 + E KK Sbjct: 612 QAEDKRHKKSRNAKK 626 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 54/76 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + +DN + + D E+ ++Q K NIY +TRVEPSL+AAFV+YG Sbjct: 2 KRILINATHSEEIRVALCKDNHLYDFDLENRTREQKKANIYKGHITRVEPSLEAAFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFLP EI P+Y Sbjct: 62 SARQGFLPLREIAPEY 77 >gi|70729171|ref|YP_258907.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens Pf-5] gi|68343470|gb|AAY91076.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens Pf-5] Length = 1087 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 223/664 (33%), Positives = 327/664 (49%), Gaps = 48/664 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 28 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 88 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYA 266 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E L+ DRAR Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRAR 386 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSP 506 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS------------------------ 609 NT + A + + ++ L+ + Sbjct: 507 EANTNQSSYEIAAAAAEAEEVQPTAATRTLVRQEAAVKTAPARANAPVPTEVVAAPVAAP 566 Query: 610 --------------------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + E+ +V E+ R +RR + Sbjct: 567 APVAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPVTERPARSNEEQRRNGRQQSRNRNG 626 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 D + + + E + P E + Sbjct: 627 RRDEERKPREERAPREERAPREERQPREVREAREEVQAVAREERAPRAPREERQPRAPRE 686 Query: 710 DPIV 713 + Sbjct: 687 ERKP 690 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 18 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 78 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122 >gi|320327713|gb|EFW83721.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4] Length = 1110 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 608 RRDEERKPREERAPREERAERAPREERATREERAPREERAPREERTVREPREAREDSAPR 667 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 668 EERPARTSRERKPREAR 684 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|160900714|ref|YP_001566296.1| ribonuclease [Delftia acidovorans SPH-1] gi|160366298|gb|ABX37911.1| ribonuclease, Rne/Rng family [Delftia acidovorans SPH-1] Length = 1044 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 201/660 (30%), Positives = 313/660 (47%), Gaps = 28/660 (4%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q I EVI+ Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQYFAEGVSPSQARINEVIREGQELIVQVEKEERGNKGAALTTFISLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG RT E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGEDRAE-LKEAMDQLEYPKGMSIIARTAGIGRTAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ + A ++ L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM+ +MP Sbjct: 189 LWNAIDGAAKSAKGAFLIYQESSLVIRAIRDYFNGDIGDILIDTDDIYEQAQQFMQHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVSIDVNS R+ Sbjct: 249 EHAARVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSIDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE KN R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR++ ++ E C C G+G++R S AL ILR ++E Sbjct: 369 RARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHVRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 ++ + +V +LLN+KR I + E + V++ +V + + +E+ Sbjct: 429 SMKDNTAAVHCQVPVEVASFLLNEKRGEITKIELKQRVNVIMVPNKSMDTPHYKLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + ++ + + Q+ P + + ++E R Sbjct: 489 DDVRLESMEASYKLAEELDAETTVTRRSQEPTNKQTPMIKGVLPDMPAPIAEPRPEGSRN 548 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVID---------------------------DS 663 R ++R A V+ + Sbjct: 549 RPANGQQRDAKPAATAAAPAPAVAPVVVREQGFFAWLKSLFGFSAAPAPVAAPAPAAEAP 608 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N E + + P E + D + +R + Sbjct: 609 AREARRDGRNDNRGRRNERNGERGERSERNGERAGAPNAERQAGNGDRNRRNAERGERTE 668 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 45/109 (41%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + E + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFAEGVSPSQARINEVIREGQELIVQVEKEERGN 110 >gi|331012622|gb|EGH92678.1| ribonuclease E [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1110 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 668 EERPARTSRERKPREAR 684 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|189501611|ref|YP_001957328.1| Rne/Rng family ribonuclease [Candidatus Amoebophilus asiaticus 5a2] gi|189497052|gb|ACE05599.1| ribonuclease, Rne/Rng family [Candidatus Amoebophilus asiaticus 5a2] Length = 516 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 150/576 (26%), Positives = 266/576 (46%), Gaps = 60/576 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +++I A + R+ L+D + E E + K G+IYL V ++ +L A+FVD Sbjct: 1 MALELVISAVQ-DGFRIAFLKDGALIEYQTEEKDTKFTVGDIYLGTVKKLAHNLNASFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P +Y I + A+ + Sbjct: 60 IGYKKVAFLHYSDLGPQFYSISKFTQLAI----------------------------NGQ 91 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + +F+ E + + ++ + N + + E + K R Sbjct: 92 VKDYKLNDFTLEPPIDKLGKVSDVIHKNQPILVQIAKEPISNKGPR-------------- 137 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 ++ L+LAGRY +L+P ++ +S++ITN +R+ L + ++ Sbjct: 138 ---------------LSAELALAGRYMILVP-VNQTVNVSKRITNSEERQRLLRLVSSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G+I+RTA + ++ +D + L+ W+ + ++V V E N +R Sbjct: 182 PA-NFGLIIRTAAEGKEVAKLVQDLKELLEKWEAGIKALSHAVPRDKVIGEINRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + I++ Y E K ++K + P +IV+QY+ +F GIE QL L Sbjct: 241 DMLSEKFDNILIDDPTAYSELKQYIKTIAPEKEKIVKQYQGKVKLFEHLGIEKQLKLLFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V++ GY+II TEA+ IDVNSG S E E+ AL NL AA+EIARQLRLRD+ Sbjct: 301 QTVSIEGGGYLIIEHTEAMHVIDVNSGNSAIEKDHEEMALSINLAAAKEIARQLRLRDMG 360 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IV+DFID+ + +N R + + +KE + +DR++V V +S FGL++++RQR+R T Sbjct: 361 GIIVIDFIDIRDPENKRKIYQAMKEYMSEDRSKVTVLPLSKFGLMQITRQRVRPVTNLIT 420 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G G I +A I +S++ L +I + H + Y + + Sbjct: 421 QEQCPTCDGTGKISPSILIADQIEKSIQLLLTTQNEESITLFVHPYLYAYFTAGFFSRRL 480 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576 ++ ++ IN+ L + + ++ Sbjct: 481 KWLLKYKKWINLAEDSSLGITEYKFINKQNEEIELS 516 >gi|218890825|ref|YP_002439689.1| ribonuclease E [Pseudomonas aeruginosa LESB58] gi|218771048|emb|CAW26813.1| ribonuclease E [Pseudomonas aeruginosa LESB58] Length = 1057 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 217/621 (34%), Positives = 317/621 (51%), Gaps = 6/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTA R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREGLNGLNAPADMGLIVRTASLGRSTEELQWDLDYLLQLWS 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A + + V L+ + Q V + Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+ + ++ E + + + D + Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608 Query: 694 IPPVSTPEMESSNSSSDPIVK 714 E + Sbjct: 609 RRDEERKPREERAERQPREER 629 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106 >gi|254508495|ref|ZP_05120614.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16] gi|219548607|gb|EED25613.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16] Length = 996 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 195/639 (30%), Positives = 317/639 (49%), Gaps = 20/639 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ Y A + ++L+ P Sbjct: 188 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+++++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV E+ F + + Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSEMETPHFDVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIR 629 + + + + E ++ + + + E + ++ + + Sbjct: 488 EEFDLLSYLL-----PKKLEAMKEAEGREVSEVDAKPKKLEEPVLKGFASPAQSAPTPPK 542 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSI-------QNVIDDSFDMYMEPSDITNHNLLENG 682 + + + + G+VS ++ + SD + Sbjct: 543 PTPKAKESKPAIAEESKPGLVSRFFKALGSFLFGSGAEEEKVEEKQAKSDKKDGQRNNRN 602 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 +N + + + +K + Sbjct: 603 RRNRNDNRRRNSRDNRNENRKDNRDDKRDNKRKPQSRDE 641 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106 >gi|296388531|ref|ZP_06878006.1| ribonuclease E [Pseudomonas aeruginosa PAb1] Length = 1054 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 9 EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 188 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 428 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A + + V L+ + Q V + Sbjct: 488 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 545 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+ + ++ E + + + D + Sbjct: 546 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 605 Query: 694 IPPVSTPEMESSNSSSDPIVK 714 E + Sbjct: 606 RRDEERKPREERAERQPREER 626 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 43/103 (41%), Positives = 62/103 (60%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 103 >gi|262374096|ref|ZP_06067373.1| ribonuclease E [Acinetobacter junii SH205] gi|262311107|gb|EEY92194.1| ribonuclease E [Acinetobacter junii SH205] Length = 1119 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 206/574 (35%), Positives = 321/574 (55%), Gaps = 11/574 (1%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILSSLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQSSASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E V + V+ L + I+ Sbjct: 430 RERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSNVRVTVLPHPHLETPHYQIQ------ 483 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 G S + + + + + + + + +++ + + + Sbjct: 484 -FNPDGFAPSSYERTEATRSSEKELGYESSDWHLEEADHSHPAAPAQNATAPQKKAHQAQ 542 Query: 633 RRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + + AT A + + ++ + + + ++ NGA + Sbjct: 543 AAQAKPAQATVQKSASPCAWLENLFVQKQAQTTDQSRSAQNAAAAIEQMINNGAVSRGQF 602 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 V+IP + E + S++ I + + R+ Sbjct: 603 GQVNIPAPAAVETPAPASNNAYISQAPAKQEARE 636 Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y++ Sbjct: 62 AQRQGFLSMREIANSYFK 79 >gi|39998329|ref|NP_954280.1| ribonuclease G [Geobacter sulfurreducens PCA] gi|39985275|gb|AAR36630.1| ribonuclease G [Geobacter sulfurreducens PCA] Length = 531 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 149/565 (26%), Positives = 252/565 (44%), Gaps = 68/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MAN+++I+ S ETR+ ++ + + EL E +K I GNIY +V RV P +QAAFVD Sbjct: 32 MANELVINTS-SHETRIALIENGTIAELYIERSREKGIVGNIYKGRVVRVLPGMQAAFVD 90 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ A+ + + + E + P + L Sbjct: 91 IGLEKAAFLYVADV-----------FDAMEEFETFMEVNGEESDSERQVLHPLHPIEELL 139 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +E I + + G+ ++ + + + Sbjct: 140 QEGQEILVQVSKEPIGT----------------KGARITSHVSLPGRHLVYMPTVDHVGV 183 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + + AG G I R ++L L Sbjct: 184 SRRIEDEPERERLKEIVGKAKPAG-----------GGFIVRTAAEGKTEEDLVADMNYLT 232 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + V + AP L++ + ++ ++ IR Sbjct: 233 KLW-----------------------------EEVVRRNEKAHAPCLIHADLDVTQKVIR 263 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ +++S I+V + + F+ MP + Y+D PIF G+EV++ Sbjct: 264 DILTENVSRIVVDSRHEHDKIVQFISTFMPKMKYSMELYDDEEPIFDHFGLEVEISRALG 323 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR++ Sbjct: 324 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 383 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+E++K D+++ + IS+ GL+EM+R+R+R S+ Sbjct: 384 GIIIIDFIDMEKEVNREKVFTALEEAMKADKSKTNILKISDLGLVEMTRKRVRESIGRMM 443 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+++V I R + +L +++ H V L +++R + Sbjct: 444 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKVMLTVHPQVADLLYDEERRGLE 503 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E +F I V + F I Sbjct: 504 ELEKKFKKRITVRAKPGFHQEQFEI 528 >gi|319941547|ref|ZP_08015873.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B] gi|319804917|gb|EFW01759.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B] Length = 1169 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 196/546 (35%), Positives = 293/546 (53%), Gaps = 33/546 (6%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+E I Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLMPN + +SR+I + Sbjct: 89 IKEAIHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEERQ 148 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL----------- 278 + L+E L++P GM I RTAG RT E++ D YL++LW+ + + Sbjct: 149 E-LREAMDRLKLPNGMSTIARTAGIGRTTEELQWDLNYLLKLWEAITDAARPVYEYPTEN 207 Query: 279 ----------------ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 + AP L+ EE NL+ RAIRD + +I EI+V + Y +A+ Sbjct: 208 GHTKLLPEAQINGKKGKRANPAPFLIVEESNLVVRAIRDYFQPEIGEILVDTDDIYEQAR 267 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 FM +MP V++Y D P+F R IE Q+++ + V LPS G ++I+ TEALV+I Sbjct: 268 QFMAHVMPDMVDRVKRYRDDIPLFTRFQIEQQIETAYSRTVPLPSGGAIVIDHTEALVAI 327 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNS R+TR IE+TA +TN EAA+E+ARQ+RLRDL GLIV+DFIDM E KN R+VE++ Sbjct: 328 DVNSARATRGADIEETAFKTNCEAADEVARQMRLRDLGGLIVIDFIDMAEAKNQRAVEQR 387 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 LK++++ DRARVQ IS FGL+E+SRQR+R S+ E + C C G G IR S A+ Sbjct: 388 LKDAIRYDRARVQTAKISRFGLMELSRQRLRPSLSEGSHITCPRCNGVGVIRDTESCAIQ 447 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 +LR ++E ++ ++ DV +LLN+KR I + EAR V I +V L Sbjct: 448 VLRILQEEAMKEGTGSVRAQVPVDVATFLLNEKRNDITKLEARHRVPIVLVPNTSLETPH 507 Query: 563 FYIEKGSPVQA--LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++IE+ V +++ D Q+E L + ++++ + Sbjct: 508 YHIERIRQDDERLEVQEPSFKLAETIETVADDPYAQKSQEEKPLRPKQVPVIKNLIERDP 567 Query: 621 SEESTGVIRKRRRRRRR---RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + T +K ++ ++ + + D+ E S TN + Sbjct: 568 APVQTAESKKAEQKANAGRVKQLQPVEPKKSLFKRIIGFFLGTSDNKAEQSEKSAKTNKS 627 Query: 678 LLENGA 683 + Sbjct: 628 SQKKDR 633 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML +A+H EETRV ++ ++ ++D E+ ++ K NIY+ VTR+EPSL+A F+DYG Sbjct: 2 KRMLFNATHPEETRVGIVDGQKLIDIDIETAGREARKSNIYMGVVTRIEPSLEACFIDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI Y+ R A +KE+ + + G+ Sbjct: 62 EERHGFLPFKEISRSYFAEGVDVRLATIKEAIHEGQELIVQVEKEERGN 110 >gi|298486211|ref|ZP_07004274.1| Ribonuclease E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159218|gb|EFI00276.1| Ribonuclease E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1129 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 28 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 88 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 266 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 507 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 566 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 567 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 626 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 627 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSTPR 686 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 687 EERPARTSRERKPREAR 703 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 18 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 78 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122 >gi|114704663|ref|ZP_01437571.1| Ribonuclease E and G [Fulvimarina pelagi HTCC2506] gi|114539448|gb|EAU42568.1| Ribonuclease E and G [Fulvimarina pelagi HTCC2506] Length = 1013 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 286/619 (46%), Positives = 376/619 (60%), Gaps = 2/619 (0%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR+ E + + + + + +++ + ++ Sbjct: 215 DREN--DEEEASSDGEGRRSKRSARRKRGRRSSNRGRGRHDSDDKEVDSDNDGDDDNGDE 272 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V + + ++ Y IQEVIK RQILLVQ+VKEERGNKGAA+TTYLSLAG Sbjct: 273 VDEIGSEDALEEVPVRQARPRKNYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAG 332 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RYSVLMPNT++G ISRKITN DRK L+++ + L+VP GMG+ILRTAGA+RTK E+KRD Sbjct: 333 RYSVLMPNTARGGGISRKITNQADRKRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRD 392 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 +EYLMRLW++VR L L S+AP LVYEEG+LIKR+IRDL+ KDI +I+VSGE GYREAKDF Sbjct: 393 YEYLMRLWESVRTLTLQSIAPSLVYEEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDF 452 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 M++LMPS A+ V+ Y D PIF R GIE QLD + Q VTL S GY+IINQTEALV+IDV Sbjct: 453 MRMLMPSQAKAVQPYRDATPIFTRQGIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDV 512 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 NSGRSTRE IE+TA QTNLEAAEEIARQLRLRDLAGLIVVDFIDM+EK+NNR+VEKK+K Sbjct: 513 NSGRSTREMSIENTAYQTNLEAAEEIARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMK 572 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + LK DRAR+QVG IS+FGL+EMSRQRIR+SVLEST + C C+GAG +R+ SS+AL + Sbjct: 573 DCLKNDRARIQVGKISHFGLMEMSRQRIRASVLESTMRPCPVCEGAGMVRATSSLALHAI 632 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R +E+YL + ++IV ++ L++LN+KR I E E + I + + Sbjct: 633 RHIEDYLQKNKGRDLIVKVPTETALFILNEKRHHIDELEQNHDLRIFIEADPSVGHNDLS 692 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 IE+G + A E + + SE+ +D + + + E Sbjct: 693 IEQGGVASRPITRNFVSPISVAAEDAVDEDEDADVEISEEETGTSEARDDSESSDDNNEG 752 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 R RRRRRRR D ++ G +S + + + Sbjct: 753 RSKGRGRRRRRRRGGSDGDDNENGGNEQQASDSSNASSDDVDNSDDESQDSDGSSGRRRR 812 Query: 685 GFTENYDVSIPPVSTPEME 703 + + E Sbjct: 813 RRGRRGGRRHRDGNDKQAE 831 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 82/157 (52%), Positives = 102/157 (64%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MANKMLID+SH EETRVVV+R NRVEE DFESEHKKQ+KGNIYLAKVTRVEPSLQAAF++ Sbjct: 1 MANKMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGG RHGFL F EIHPDYYQIP +DR+ALL E E ++ + + Sbjct: 61 YGGGRHGFLAFSEIHPDYYQIPKADREALLAEEMARGQADEEDEEEEREVKRKSRSKAAR 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157 E + S++ E E + + + + + + Sbjct: 121 REDKSDESVSEDAEAEGGLRDDLNDSDDADSERRNED 157 >gi|330985583|gb|EGH83686.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1112 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 667 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 668 EERPARTSRERKPREAR 684 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|15598172|ref|NP_251666.1| ribonuclease E [Pseudomonas aeruginosa PAO1] gi|9949075|gb|AAG06364.1|AE004723_8 ribonuclease E [Pseudomonas aeruginosa PAO1] Length = 1057 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A + + V L+ + Q V + Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+ + ++ E + + + D + Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608 Query: 694 IPPVSTPEMESSNSSSDPIVK 714 E + Sbjct: 609 RRDEERKPREERAERQPREER 629 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106 >gi|127512522|ref|YP_001093719.1| ribonuclease [Shewanella loihica PV-4] gi|126637817|gb|ABO23460.1| RNAse E [Shewanella loihica PV-4] Length = 1128 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 315/641 (49%), Gaps = 20/641 (3%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 ++ A+ D D+ I + ++ A I E S+ +A D + Sbjct: 10 QSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 F+ + I+EV+K Q ++VQI KEERGNKGAA+TT++SLAG Y VL Sbjct: 70 LKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LK LEVP GMG+I+RTAG + E+K D + L Sbjct: 130 MPNNPRAGGISRRIEGDERTE-LKAAMSELEVPQGMGLIVRTAGVGKDAAELKWDLKVLQ 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 W + E A N AP L+++E N+I RAIRD +D+ E+++ ++ Y +AK + L+ Sbjct: 189 HHWAAIEEAAQNRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQAKQHVALVR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + +++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+ Sbjct: 249 PDFVDRIKRYEAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARA 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE ++++++ Sbjct: 309 TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHH 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGL+EMSRQR+R S+ ES +C C G G IR S+ALSILR +EE Sbjct: 369 DRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 ++ I DV +LLN+KR I E R V + V+ + + + + Sbjct: 429 EAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVTRHR 488 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNI-ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + +K+ ++ Y+ E E L + + + Sbjct: 489 KDDQISESSYKLLEQPESKLYEPRKLERAASPEPALKGFSTPVKDAPTQAAPAPAKPAEK 548 Query: 629 RKRRR-------------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + +P + + + + ++ + + D Sbjct: 549 AQEPGLIAKLFAAIGKLFGGEPEQPKEEVKKEQPRRNAQNRNSRRNNRRNDTRKSRDEGK 608 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + ++ D + + + P + Sbjct: 609 ETDNKRSRSAKPDDADSRSAKSRNEKRQKRDRDDKPQSQSK 649 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|226951904|ref|ZP_03822368.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter sp. ATCC 27244] gi|294649163|ref|ZP_06726604.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194] gi|226837444|gb|EEH69827.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter sp. ATCC 27244] gi|292824961|gb|EFF83723.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194] Length = 1143 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 201/557 (36%), Positives = 304/557 (54%), Gaps = 5/557 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 91 REIANSYFKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 150 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L +P GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 151 NPKGGGISRQISGSVREE-LKEILATLNIPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 209 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A +P LV++E ++ RAIRD D+ EI++ E+ Y EA +F+K +MP Sbjct: 210 AQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEAYNFVKAVMPRQ 269 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 270 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 329 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA Sbjct: 330 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 389 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 390 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 449 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E V + V+ L + I+ Sbjct: 450 RERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSNVRVTVLPHPHLETPHYQIQYNPAGF 509 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A + + S ++A + + + K+ Sbjct: 510 APSSYERTEATRSSEKELGYESSEWHLEDAEHVHAAPAQAQTAAPQKKTAQPQAAQPKQA 569 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + + ++ + + + L+ GA + V Sbjct: 570 Q----VPAQKSASPCAWLENLFVQKQAQTIDQSRSAQNAAAAIEQLVNGGAVSRGQFGQV 625 Query: 693 SIPPVSTPEMESSNSSS 709 + P V+ +S +++ Sbjct: 626 NTPVVTETPAPASTTNN 642 Score = 118 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 22 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 81 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y++ Sbjct: 82 AQRQGFLSMREIANSYFK 99 >gi|107102525|ref|ZP_01366443.1| hypothetical protein PaerPA_01003589 [Pseudomonas aeruginosa PACS2] Length = 1054 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 9 EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 188 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 428 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A + + V L+ + Q V + Sbjct: 488 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 545 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+ + ++ E + + + D + Sbjct: 546 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 605 Query: 694 IPPVSTPEMESSNSSSDPIVK 714 E + Sbjct: 606 RRDEERKPREERAERQPREER 626 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 43/103 (41%), Positives = 62/103 (60%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 103 >gi|71734954|ref|YP_273875.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555507|gb|AAZ34718.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1129 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 222/677 (32%), Positives = 327/677 (48%), Gaps = 57/677 (8%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 28 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 88 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 266 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 507 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 566 Query: 601 E--------------------ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 A P + + + R R++ R R Sbjct: 567 APVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 626 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + + + Sbjct: 627 RRDEERKPREERAPREERAERAPREERAPREERAPREERAPREERTVREPREAREDSAPR 686 Query: 701 EMESSNSSSDPIVKKTR 717 E + +S + ++ R Sbjct: 687 EERPARTSRERKPREAR 703 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 18 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 78 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122 >gi|148977657|ref|ZP_01814233.1| ribonuclease E [Vibrionales bacterium SWAT-3] gi|145963172|gb|EDK28440.1| ribonuclease E [Vibrionales bacterium SWAT-3] Length = 1053 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 199/660 (30%), Positives = 319/660 (48%), Gaps = 37/660 (5%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+K Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLKEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ + A+ ++L+ P Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + A ++ E ++A+ P E T + Sbjct: 491 EEFDLLSYLLPKKLDALKEAESKEP--AEQAIRPKKIEEPALKGFAAPAQSAPTPAPAPK 548 Query: 632 RRRRRRRRPATDHH-----------------------------DAGVVSDVSSIQNVIDD 662 + ++ P + ++ + + D Sbjct: 549 AAQEKKAEPVGQESGLIGRFFKAIGSFLFGSSTQEEKQEEKQTEEKPKNNRNGNRQRRDR 608 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N +N + + + K+ R K+R Sbjct: 609 NDNRRRNQRGERGDNRNDNRDNKRRRKPVRDEKSEEQKDAAPQQNRQPRKPKQDRRNKQR 668 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLKEGQEVIVQVEKEER 109 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 42/159 (26%), Gaps = 15/159 (9%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE------------- 613 + + + + + P D+ + + + S+ E Sbjct: 638 RDEKSEEQKDAAPQQNRQPRKPKQDRRNKQRDEQKQREEQAPSKLAEEGLQLAADAQAGK 697 Query: 614 -DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 D ++ + +R+RR+ ++ A + +S + S + Sbjct: 698 SDAPKAKPEAKAAKIKERRQRRKLNKQVRVKDQQAQADAAENSTKEQKAPSVSKEQAAAK 757 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + A E + E + + P Sbjct: 758 NKSVAQEQKVAEQV-EATQANGEQSEQEEPKQRRNRRSP 795 >gi|152996326|ref|YP_001341161.1| ribonuclease [Marinomonas sp. MWYL1] gi|150837250|gb|ABR71226.1| ribonuclease, Rne/Rng family [Marinomonas sp. MWYL1] Length = 1071 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 203/572 (35%), Positives = 297/572 (51%), Gaps = 14/572 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 + + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 74 SKTYFSKKSNHEGRINIKDVLSEGQEVIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNN 133 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I +LKE GL P G+I+RTAG R+ E++ D +YL LW Sbjct: 134 PRAGGISRRIDGDDRS-HLKEAMSGLNTPENGGLIVRTAGVGRSTEELQWDLDYLDTLWS 192 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ + A AP L+Y+E N++ RAIRD +DI E+++ + Y++A +F+ +MP + Sbjct: 193 SITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQDAINFVMQVMPHFK 252 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ Y D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 253 SRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARATKGG 312 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM +N + VE ++K +L+ DRAR Sbjct: 313 DIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVETRMKNALEADRAR 372 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ E++ VC C G G+IR S+ALS+LR +EE + Sbjct: 373 VQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLALSVLRLIEEECSK 432 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 I V +LLN+KR I + E R V I +V + F +E+ Sbjct: 433 ERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNNVHIILVPNPHMETPHFEVERIRDDST 492 Query: 574 LVNTGHK-----VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 +V+ + K E V A+ I + + Sbjct: 493 VVSQNENSYTLVETPEQPPYEPRKANENVRPQAAVTSIAPKAPAPEHTAPAAATPKVVKA 552 Query: 629 RKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + + +R + V+ QN D S + N+ Sbjct: 553 QDKPSLLKRIITALFGETQSKPKQKTVSKTPPVAPSQNDRDTSSKPNGNRVNRNKRNVKH 612 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 A N E + S + Sbjct: 613 QNADRDDNNTAEKNRSTRQSRREQAESGTKGT 644 Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 55/76 (72%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 3 RMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDFGA 62 Query: 64 NRHGFLPFLEIHPDYY 79 +RHGFLP EI Y+ Sbjct: 63 DRHGFLPLKEISKTYF 78 >gi|116050978|ref|YP_790197.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14] gi|115586199|gb|ABJ12214.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14] Length = 1057 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A + + V L+ + Q V + Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+ + ++ E + + + D + Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608 Query: 694 IPPVSTPEMESSNSSSDPIVK 714 E + Sbjct: 609 RRDEERKPREERAERQPREER 629 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106 >gi|302187287|ref|ZP_07263960.1| ribonuclease E [Pseudomonas syringae pv. syringae 642] Length = 1106 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 221/678 (32%), Positives = 325/678 (47%), Gaps = 62/678 (9%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAAPAPT 547 Query: 601 EALLPIPKSES-------------------------LEDIQDNIVSEESTGVIRKRRRRR 635 A P S + + + + +++ R Sbjct: 548 PAPAPAAHEPSLFKGLVKSLVSLFASKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRG 607 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 R R + + E + ++ Sbjct: 608 RNNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREDSTPREER 667 Query: 696 PVSTPEMESSNSSSDPIV 713 P T + + Sbjct: 668 PARTTRERKPREAREDRP 685 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|86147923|ref|ZP_01066227.1| ribonuclease E [Vibrio sp. MED222] gi|85834248|gb|EAQ52402.1| ribonuclease E [Vibrio sp. MED222] Length = 1041 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 202/667 (30%), Positives = 323/667 (48%), Gaps = 42/667 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV++ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ + A+ ++L+ P Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+++++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE--------------------S 611 + + + + +A ++ E Q I + Sbjct: 491 EEFDLLSYLLPTKLEALKEAESKEPAEQTIRPKKIEEPALKGFAAPAQSAPTPAPAPKAV 550 Query: 612 LEDIQDNIVSEES----------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 E ++ ++E + +++ ++ ++ + G Sbjct: 551 EEKKAESAATQEPGLVGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNRNNGNRQRRDR 610 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 N + E N EN + P E + K+ Sbjct: 611 NDNRRRNQRGDRGEQRGERGDNRNENRDNKRRRKPVRDEKPEEQKETAPQQNRQPRKPKQ 670 Query: 716 TRWWKRR 722 R K R Sbjct: 671 DRRNKSR 677 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 109 >gi|254241683|ref|ZP_04935005.1| ribonuclease E [Pseudomonas aeruginosa 2192] gi|126195061|gb|EAZ59124.1| ribonuclease E [Pseudomonas aeruginosa 2192] Length = 1057 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 218/621 (35%), Positives = 318/621 (51%), Gaps = 6/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A + + V L+ + Q V + Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+ + ++ E + + + D + Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608 Query: 694 IPPVSTPEMESSNSSSDPIVK 714 E + Sbjct: 609 RRDEERKPREERAERQPREER 629 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106 >gi|254235950|ref|ZP_04929273.1| ribonuclease E [Pseudomonas aeruginosa C3719] gi|126167881|gb|EAZ53392.1| ribonuclease E [Pseudomonas aeruginosa C3719] Length = 1057 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 218/621 (35%), Positives = 317/621 (51%), Gaps = 6/621 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I ++ A I E S+ +A D + +K Sbjct: 12 EELRVALVDGQRLFDLDIEAGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I+EV+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 131 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 PRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWS 190 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E + AP L+Y+E N+I RAIRD +DI E+++ EA +F++ +MP YA Sbjct: 191 AIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYA 250 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V+ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 SKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKGG 310 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE++++E+L+ DRAR Sbjct: 311 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRAR 370 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L+ Sbjct: 371 VQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALK 430 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR I + E R I ++ L F +++ Sbjct: 431 DRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSP 490 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S A + + V L+ + Q V + Sbjct: 491 EL--VAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPM 548 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 G+ + ++ E + + + D + Sbjct: 549 PEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGN 608 Query: 694 IPPVSTPEMESSNSSSDPIVK 714 E + Sbjct: 609 RRDEERKPREERAERQPREER 629 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLFDLDIEAGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + + Q V + Sbjct: 62 AERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEE 106 >gi|46446951|ref|YP_008316.1| putative ribonuclease G (axial filament protein) [Candidatus Protochlamydia amoebophila UWE25] gi|46400592|emb|CAF24041.1| putative ribonuclease G (axial filament protein) [Candidatus Protochlamydia amoebophila UWE25] Length = 512 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 162/562 (28%), Positives = 279/562 (49%), Gaps = 65/562 (11%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ +ETR +L++ + +L E + ++Q+ GNIY +V + ++Q+AF+D Sbjct: 3 EILLNI-ESKETRYALLKNGELRDLVVERKKERQLTGNIYRGRVKNILHNIQSAFIDINE 61 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 +GF+ +I ++ + + D + D Sbjct: 62 GENGFIHISDI-----------------------IENTKKFEQLFDMDFDLDYDIKALNE 98 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 N E +K Q +LVQ Sbjct: 99 KEQQNLDIEQV---------------------------------------MKPDQPVLVQ 119 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKE G+KGA +T+ +S+AGRY VL+PN+S +SRKI + V R+ LK++ R E+P Sbjct: 120 VVKEPIGSKGARLTSNVSIAGRYLVLLPNSSHRG-VSRKIEDRVARERLKKLIRAFEMPQ 178 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 MG+I RTA AS T+ + + L+ W + E + P L+Y E +LIK+A+ Sbjct: 179 DMGLICRTASASATQEMLIAEAHDLLHNWQTIMENFKKATEPTLLYAESDLIKKAVITAI 238 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 K ++V Y+ K +A + Y D P+F R +E +++ + ++ Sbjct: 239 DKRYDRVLVDDYATYQTCKRLYSRYASEHALRIEYYRDKVPMFERFNVEREIEKTLRRKI 298 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGL 422 LPS GY+ ++TEA+ +IDVNSGRS +E++ ++ NLEAAEEI+RQLRLR++ GL Sbjct: 299 WLPSGGYLYFDRTEAMYTIDVNSGRSNNNKTDVEESLVRINLEAAEEISRQLRLRNIGGL 358 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 ++ DFIDM +KN R V ++LK+ +K+D A+ + +S FGL+EM+RQR R S+L++ Sbjct: 359 VICDFIDMRLRKNQRRVLERLKDCMKEDSAKCTILGMSEFGLVEMTRQRNRGSLLQTIFT 418 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 C YC G+G I+S S+++ I R+ ++ + + + + H ++ YL + + Sbjct: 419 GCPYCAGSGIIKSHESLSIEIERAFKKIVAYHEQFALKLVVHPELDRYLNIIDKQYLFRL 478 Query: 543 EARFGVSINVVIGIELADKLFY 564 + + + L + Sbjct: 479 ATDYNAHLTCEVDDRLHLNEYQ 500 >gi|260220729|emb|CBA28582.1| Ribonuclease E [Curvibacter putative symbiont of Hydra magnipapillata] Length = 990 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 198/668 (29%), Positives = 300/668 (44%), Gaps = 50/668 (7%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + IQ+ I+ Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQYFQQGVSASNARIQDAIREGQELLVQVEKEERGNKGAALTTFISLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKENMDQLEYPNGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A + L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP Sbjct: 189 LWGAIDGAAKGAKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDVYEQAQQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D P+F R IE Q++S + VTLPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHAARVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRREVENRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR+R ++ E + C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ +++ +V +LLN+KR I + E + +++ +V L + +E+ Sbjct: 429 SLKDNTASVLCQVPVEVASFLLNEKRTEIAKIELKQRINVLMVPNKTLETPNYKLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP----------------------- 607 ++ + + Q+ P Sbjct: 489 DDPRLDHIEASYKMADDMEEATGVTRRSQEPTNKQTPVIKGVLPDAPAPIAPPKPEPVKA 548 Query: 608 --------------------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 E+ ++ R R R Sbjct: 549 APVPVAAPVATPASKGFLGWIKSLFAAPEAAPAPAVAPAPAKTDDKREGRNGRDGNRNGG 608 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + +N N NG E D Sbjct: 609 RNQRGDRGGEGRGEPRNEARPDNRGERSERGNRNERGERNGRGERGERQDRGNRNERGER 668 Query: 702 MESSNSSS 709 + Sbjct: 669 NNAPRQER 676 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 66/109 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+Q S A ++++ + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFQQGVSASNARIQDAIREGQELLVQVEKEERGN 110 >gi|298507260|gb|ADI85983.1| ribonuclease G [Geobacter sulfurreducens KN400] Length = 500 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 149/565 (26%), Positives = 252/565 (44%), Gaps = 68/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MAN+++I+ S ETR+ ++ + + EL E +K I GNIY +V RV P +QAAFVD Sbjct: 1 MANELVINTS-SHETRIALIENGTIAELYIERSREKGIVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ A+ + + + E + P + L Sbjct: 60 IGLEKAAFLYVADV-----------FDAMEEFETFMEVNGEESDSERQVLHPLHPIEELL 108 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +E I + + G+ ++ + + + Sbjct: 109 QEGQEILVQVSKEPIGT----------------KGARITSHVSLPGRHLVYMPTVDHVGV 152 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + + AG G I R ++L L Sbjct: 153 SRRIEDEPERERLKEIVGKAKPAG-----------GGFIVRTAAEGKTEEDLVADMNYLT 201 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + V + AP L++ + ++ ++ IR Sbjct: 202 KLW-----------------------------EEVVRRNEKAHAPCLIHADLDVTQKVIR 232 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ +++S I+V + + F+ MP + Y+D PIF G+EV++ Sbjct: 233 DILTENVSRIVVDSRHEHDKIVQFISTFMPKMKYSMELYDDEEPIFDHFGLEVEISRALG 292 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR++ Sbjct: 293 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 352 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+E++K D+++ + IS+ GL+EM+R+R+R S+ Sbjct: 353 GIIIIDFIDMEKEVNREKVFTALEEAMKADKSKTNILKISDLGLVEMTRKRVRESIGRMM 412 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+++V I R + +L +++ H V L +++R + Sbjct: 413 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKVMLTVHPQVADLLYDEERRGLE 472 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E +F I V + F I Sbjct: 473 ELEKKFKKRITVRAKPGFHQEQFEI 497 >gi|118594942|ref|ZP_01552289.1| probable ribonuclease E [Methylophilales bacterium HTCC2181] gi|118440720|gb|EAV47347.1| probable ribonuclease E [Methylophilales bacterium HTCC2181] Length = 759 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 206/680 (30%), Positives = 326/680 (47%), Gaps = 51/680 (7%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + + + + + + E + ++ D + Sbjct: 7 QSEELRVAIVSDSKLEDLDFERGNREQRKSNIYKAVVTRVEPSLEAAFVNYGVDRHGFLP 66 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + K K+ I++VI Q ++VQ+ K+ERGNKGAA+T+YLSLAGRY VLM Sbjct: 67 FKEIAPEYYSKKSRKKDLSIKDVINEGQEIIVQVSKDERGNKGAALTSYLSLAGRYIVLM 126 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + G ISR+I KE+ L V G VI RTAG + +I+ D +YL + Sbjct: 127 PNNNDGGGISRRIEGEERSAF-KEVLSQLTVTKGTSVIGRTAGIGASVEQIQWDLDYLNQ 185 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+ + A P L+Y+E NL+ RAIRD + DI E+++ ++ + +A FM +MP Sbjct: 186 LWEAIENAANAQEGPFLIYQESNLVIRAIRDYFSADIEEVLIDKQEIFDQAHQFMSHVMP 245 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 YA V+ YE+ +F + IE Q++S EV LPS G ++I+ TEALVS+DVNS RST Sbjct: 246 DYAERVKLYEENISLFSKFNIENQIESAFLREVQLPSGGSIVIDHTEALVSVDVNSSRST 305 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA TNLEAA E+A+Q+RLRD+ GL+VVDFIDME +KN R VE +++++LK D Sbjct: 306 KGRDIENTAFNTNLEAASELAKQMRLRDIGGLVVVDFIDMEHQKNQREVENRMRDALKND 365 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 +AR+Q+G IS FGL+E+SRQR+R S+ +S VC C G G +R S AL +LR +++ Sbjct: 366 KARIQLGKISRFGLMELSRQRLRPSLGDSINGVCPKCSGTGRVRDIQSTALYMLRLIQDE 425 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + +V LLN+KRA I E E + I ++ + IE+ S Sbjct: 426 AARDENQIVSIQLPVEVATLLLNEKRAAINELEEKTHNDIVIIPNRYFEIPKYLIERTSK 485 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVW-------------------------------- 598 ++ + + D+++E Sbjct: 486 KSGKISYTVVEPPVEELANGDEDVEKDKLTPVVKSVMPANSSTKKNKQTKSLLGFFKNLI 545 Query: 599 ---------QDEALLPIPKSESLE---DIQDNIVSEESTGVIRKRRRRRRRRRP---ATD 643 D A + I E+++ D +++ + +R R R R+P Sbjct: 546 GSDDSDANHDDRAQVEITSPETVKGNGDQLESVNENRTNSNSNRRPGRNRSRKPGFNKNQ 605 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSD--ITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + ++ Q + +S ++ E + T + + E + V + Sbjct: 606 QQRRERGGEDATPQPSVINSKEVAEENNVGIKTPNQRRDKPVERIIEKQQEIVSQVKEKQ 665 Query: 702 MESSNSSSDPIVKKTRWWKR 721 + S+ P KK KR Sbjct: 666 SDELLSTK-PDPKKKPVRKR 684 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 45/75 (60%), Positives = 60/75 (80%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML +A+ EE RV ++ D+++E+LDFE +++Q K NIY A VTRVEPSL+AAFV+YG + Sbjct: 1 MLFNATQSEELRVAIVSDSKLEDLDFERGNREQRKSNIYKAVVTRVEPSLEAAFVNYGVD 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLPF EI P+YY Sbjct: 61 RHGFLPFKEIAPEYY 75 >gi|85713202|ref|ZP_01044231.1| RNase E [Idiomarina baltica OS145] gi|85692975|gb|EAQ30944.1| RNase E [Idiomarina baltica OS145] Length = 980 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 200/627 (31%), Positives = 315/627 (50%), Gaps = 12/627 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + F + I++V++ Q ++VQI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAKTYFPDGYTFNGRPNIKDVVREGQEVIVQIDKEERGQKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I LKE + VP MG+I+RTAG ++K E++ D L+ Sbjct: 129 NNPRAGGISRRIEGEERS-ALKEALSEINVPKEMGLIVRTAGVGKSKEELEWDLNVLIHH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E A AP L+++E N+I RA+RD +DI E+++ +K + + +D ++L+ P Sbjct: 188 WTAISEAAQKRPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSKKVFEQVRDHIQLIRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V+ YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FVNRVKLYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TA QTNLEAAEEIARQLRLRD+ GL+V+DFIDM ++ R VE +L++SL DR Sbjct: 308 GGDIEETAFQTNLEAAEEIARQLRLRDVGGLVVIDFIDMTPTRHQREVENRLRDSLAHDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+QV IS FGLLEMSRQR+R S+ ES +C C G G IRS S+ALSILR +EE Sbjct: 368 ARIQVARISRFGLLEMSRQRLRPSLGESANAICPRCSGQGTIRSSESLALSILRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + V +LLN+KRA++++ E R V ++ + F + + Sbjct: 428 IKDNTVQVQAQVPVSVATFLLNEKRASVIKIEERHNVKAVIIPNHHMDTPHFEVVRIRDD 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + V + ++++ E + + + + Sbjct: 488 E--VPEAASFNQVQKPEQQEESVAITLTKERQQLEEPALKGLQAPTAPPAPTPQSQPKTK 545 Query: 632 RRR----RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +R + + V + + +++ + N+ + + Sbjct: 546 AGSVSLLKRISQWLSQLFGTDEVEEKQQPKPRNNNNQRRGRNNNQRRNNRNNGRRNNNRS 605 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVK 714 N S P ++ + + + S + Sbjct: 606 ANNRDSDKPNTSTDSKPQDKSKTENER 632 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ +EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 61 RHGFLPLKEIAKTYF 75 >gi|328474605|gb|EGF45410.1| ribonuclease E [Vibrio parahaemolyticus 10329] Length = 1003 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 193/518 (37%), Positives = 289/518 (55%), Gaps = 6/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 188 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + + +A + E D I + Sbjct: 488 EEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEP 525 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106 >gi|146306650|ref|YP_001187115.1| RNAse E [Pseudomonas mendocina ymp] gi|145574851|gb|ABP84383.1| RNAse E [Pseudomonas mendocina ymp] Length = 1012 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 213/609 (34%), Positives = 313/609 (51%), Gaps = 10/609 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + ++ A I E S+ +A D S Sbjct: 12 EELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSERHGFLPLK 71 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 72 EISREYFSKAPEGGRINIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 132 NPRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLW 190 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++E + + AP L+Y+E N+I RAIRD +DI E++V + EA F++ +MP Y Sbjct: 191 SAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQY 250 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A ++ YED P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 ASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKG 310 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E+L+ DRA Sbjct: 311 SDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRA 370 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L Sbjct: 371 RVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEAL 430 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 431 KDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDS 490 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + E + + Sbjct: 491 -----PEALSGQTSYEIAATAENEEAAAHPAAATRTLVRQEAAIKAAPRSSAPVAAEPQP 545 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + G+V + S+ ++ + E +G ++ + Sbjct: 546 APLTPTKAPEPSLFKGLVKSLVSLFAGKEEEAQPAVTEKKNNERPPREERRNGRQQSRNR 605 Query: 693 SIPPVSTPE 701 + Sbjct: 606 GGRRDDERK 614 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 41/109 (37%), Positives = 63/109 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI +Y+ + +K+ + + G+ Sbjct: 62 SERHGFLPLKEISREYFSKAPEGGRINIKDVLKEGQEVIVQVEKEERGN 110 >gi|254429811|ref|ZP_05043518.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881] gi|196195980|gb|EDX90939.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881] Length = 1086 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 216/666 (32%), Positives = 335/666 (50%), Gaps = 34/666 (5%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+ + D E + ++ +E A A Sbjct: 8 PEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVD--------FGA 59 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++++ + PK + + I+EVIK Q ++VQ+ KEERGNKGAA+TT++S Sbjct: 60 ERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTFIS 119 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 LAGRY VLMPN + ISR+I + LKE L +P MGVI+RTAG R+ E+ Sbjct: 120 LAGRYLVLMPNNPRAGGISRRIEGEERAQ-LKEALGALTIPDEMGVIVRTAGLGRSAEEL 178 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D YL++LW ++ E + + AP L+Y+E N+I RAIRD KDI E+++ +K Y EA Sbjct: 179 QWDLNYLLKLWTSIDEASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDEA 238 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F++ +M + ++ Y+D P+F R IE Q+++ + EV LPS G ++I+ TEALVS Sbjct: 239 QGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALVS 298 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+NS R+T+ IE+TALQTNLEAAEEI+RQLRLRD+ GLIVVDFIDM +N R VE Sbjct: 299 IDINSSRATKGADIEETALQTNLEAAEEISRQLRLRDIGGLIVVDFIDMGPARNQRDVEN 358 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +++++L+ DRAR+Q+G IS FGLLE+SRQR+R S+ E+++ VC C G G+IR S+AL Sbjct: 359 RMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSLAL 418 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 SILR +EE +++ I V YLLN+KR + E V + ++ L Sbjct: 419 SILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHNVRVVIIPNQNLDTP 478 Query: 562 LFYIEKGSPVQALVNTGHKVG---SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 F +E+ Q H++ + A + E + + ++ Sbjct: 479 HFEVERIRDDQTSTQLSHEMDLLEGNKDADIASAQDTEIKTQEPAVKLMAPDTAPPPPKP 538 Query: 619 IVSEE---------------------STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 + + + ++ + +R + S Sbjct: 539 AAAAPTPQVQNLGLLARLFSWLAQVFTAEPKPAKAKKEQPQRKGDNKQRQQQNSRGGRGG 598 Query: 658 NVIDDSFDMYMEPS-DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 N + + + + N N + G G +N + + + N + + + Sbjct: 599 NTRNRNDNRNNDNRGKNDNRNKRDGGKGGDNDNRNNRNKRQNDKDGGRKNDNRQADNRSS 658 Query: 717 RWWKRR 722 R Sbjct: 659 DNRDNR 664 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 45/106 (42%), Positives = 61/106 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+H EE RV ++ R+ +LD E ++Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 1 MLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDFGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 RHGFLP EI Y+Q D Q + + + E + Sbjct: 61 RHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEE 106 >gi|148977847|ref|ZP_01814402.1| ribonuclease G [Vibrionales bacterium SWAT-3] gi|145962916|gb|EDK28187.1| ribonuclease G [Vibrionales bacterium SWAT-3] Length = 489 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 128/565 (22%), Positives = 216/565 (38%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGTLQEIHIERDARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I P + E+ Q +++ V G + Sbjct: 60 IGLEKAAFLHASDIVPH---------TECVAENEKKQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E + K+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSESERNRLKKV------------- 157 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + G + T A + + + LE Sbjct: 158 ---VSHYCDEHGGFIIRTAAEGADSNELAQ----------------DAAFLKRLWLKVLE 198 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 R G I R Sbjct: 199 RRGKHKARTRLYGELCLSQRILR------------------------------------- 221 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D ++S+I V Y K+F +P + YE PIF E ++ Sbjct: 222 DFVGTELSKIQVDSRLEYENLKEFTSEYVPELTDKLELYEGDKPIFDMYDTENEIQRSLD 281 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+QTEA+ ++D+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM + + + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMLSEDHRKRVLTSLESALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ + V L + + Sbjct: 402 CSSCPACEGRGSVKTVETVCYEILREITRVNRAYDADKFVVYAAAAVAEALEGDESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486 >gi|239814385|ref|YP_002943295.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110] gi|239800962|gb|ACS18029.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110] Length = 1074 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 189/517 (36%), Positives = 285/517 (55%), Gaps = 1/517 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q IQ+VIK Q L+VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQYFAEGVSANQARIQDVIKEGQELVVQVEKEERGNKGAALTTFISLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + A L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP Sbjct: 189 LWSAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYEQAQQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D +F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDM+E KN R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G+IS FGL+EMSRQR++ ++ E ++ C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ + V +V +LLN+KR I + E + V++ +V L + +E+ Sbjct: 429 CLKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPNYKLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ + ++ Q+ P Sbjct: 489 DDPRLDHIEASYKMADEIEDPTSVTRRSQEPTNKQTP 525 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 65/109 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA +++ + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFAEGVSANQARIQDVIKEGQELVVQVEKEERGN 110 >gi|114775486|ref|ZP_01451054.1| Ribonucleases G and E [Mariprofundus ferrooxydans PV-1] gi|114553597|gb|EAU55978.1| Ribonucleases G and E [Mariprofundus ferrooxydans PV-1] Length = 727 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 197/547 (36%), Positives = 292/547 (53%), Gaps = 14/547 (2%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 R IQ+V+ +Q LLVQ+VKEERGNKGAA+TT +SLAGRY VL PNT++G IS Sbjct: 81 KSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQISLAGRYLVLSPNTTRGG-IS 139 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 RK+++ +++KEI L+VP MG+I+RTAG +T ++RD++YL RLWD +R + Sbjct: 140 RKLSDEER-RSMKEILSQLDVPENMGLIIRTAGKDQTLEALQRDYQYLRRLWDEIRIKSE 198 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 + P L+Y EG+L RAIRD + D+ EI V + Y K F+ ++P ++V+ Y Sbjct: 199 TTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHTKAFVHAVLPGKEKLVKLYR 258 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 P+F + GIE Q + +H+ E+ L + G ++++ TEAL SIDVNS R+T+ I+DTAL Sbjct: 259 GKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALTSIDVNSARATKGKHIDDTAL 318 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 NLEAAEEIARQLR+RD+ GLIV+DFIDM +K+ + VE L+++ K D+AR+Q IS Sbjct: 319 AINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQVEDMLRKACKGDKARIQFARIS 378 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 FGLLEMSRQR+ SV ESTT+ C C+G G+IR+ S+AL +L +E++ ++ Sbjct: 379 RFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMALQMLTRMEDWAEAGKKPTLV 438 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 V SD YL+N KR I E + + I + I +L + IE+ Q N + Sbjct: 439 VQVPSDTGEYLMNNKRDNIARIEETYEIQITLQIRPDLDIPHYRIER----QWTENNQQR 494 Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV--------IRKRR 632 V K + + + P+ + E+ G + R Sbjct: 495 VEVLEDTNKRVKPPRPNRKLKPMKPVVGIPTPPPELAEKAEEKKKGPLTTLIAMLTGQSR 554 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + + ++ S + + D Sbjct: 555 KEKLQKEAEEKAQAEREAQRQSERSRNSRARGEKKSRRKPAAAKTSAPENVAEEKQKTDS 614 Query: 693 SIPPVST 699 + P Sbjct: 615 NNPNSEK 621 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 109/726 (15%), Positives = 221/726 (30%), Gaps = 83/726 (11%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+ASH EE+RV + D + ELD ES K K NIY KVT+VE SLQAAFV+YG Sbjct: 1 MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 R GFL EIHPDY++ D + Sbjct: 61 RQGFLSLSEIHPDYWK------------------------------------DGVDKSTN 84 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 P Q+ V + + + + + + Sbjct: 85 PRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQISLAGRYLVLSPNTTRGG---ISRK 141 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 + +E + + L + +++ K +T+ + + L + R Sbjct: 142 LSDEERRSMKEILSQLDVPENMGLIIRTAGKDQTLEALQRDYQYLRRLWDEIRIKSETTP 201 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP------------HLVYEEG 292 ++ G T+ + + +W + E+ ++ A L + Sbjct: 202 PPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHTKAFVHAVLPGKEKLVKLYRGKI 261 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 L ++ + C+++ E + G D + L R + H I Sbjct: 262 PLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALTSIDVNSARATKGKHIDDTALAIN 321 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 ++ ++ + G L+ ID S + + L+ + + + Sbjct: 322 LEAAEEIARQLRIRDIG--------GLIVIDFIDMASRKHGQQVEDMLRKACKGDKARIQ 373 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 R+ ++M ++ + SV + E + + R + + + L ++R Sbjct: 374 FARISRFG------LLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMALQMLTRMED 427 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 + + T V G L + + + + + L Sbjct: 428 WAEAGKKPTLVVQVPSDTG----------EYLMNNKRDNIARIEETYEIQITLQIRPDLD 477 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 ++ + V+ ++ P + L VG + P + Sbjct: 478 IPHYRIERQWTENNQQRVEVLEDTNK-----RVKPPRPNRKLKPMKPVVGIPTPPPELAE 532 Query: 593 NIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 E + L+ + +S ++ E++ +R+ R R Sbjct: 533 KAEEKKKGPLTTLIAMLTGQSRKEKLQKEAEEKAQAEREAQRQSERSRNSRARGEKKSRR 592 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 ++ + ++ + + +D N N +N P +S + Sbjct: 593 KPAAAKTSAPENVAEEK-QKTDSNNPNSEKNTPKKPRRPRKPRAPKPEGEATVNSATEQQ 651 Query: 711 PIVKKT 716 T Sbjct: 652 SAEGTT 657 >gi|94499594|ref|ZP_01306131.1| Ribonucleases G and E [Oceanobacter sp. RED65] gi|94428348|gb|EAT13321.1| Ribonucleases G and E [Oceanobacter sp. RED65] Length = 873 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 221/642 (34%), Positives = 332/642 (51%), Gaps = 16/642 (2%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---D 151 ++ A+ D D+ I ++ A I E S+ +A D + Sbjct: 7 QSEELRVALVDGQRLYDLDIEPTTRQQKKANIYKGKITRVEPSLEAAFVDFGAERHGFLP 66 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 +K S E + + I++VI+ Q ++VQ+ KEERGNKGAA+TT +SLAGRY VLMP Sbjct: 67 LKEISREYFKQSTSGRPNIKDVIEEGQEVVVQVDKEERGNKGAALTTMISLAGRYLVLMP 126 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N ++ ISR+I +++ R + VP MGVI+RTAG R E++ D +YL +L Sbjct: 127 NNARAGGISRRIEGDER-NQIRDAMRDVNVPNNMGVIVRTAGIGRASEELQWDLDYLCQL 185 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 WD ++ AP L+ +E N++ RAIRD +DI E+++ Y EA F++ +MP Sbjct: 186 WDAIKGAYDRRDAPCLLLQESNVVIRAIRDYLRQDIGEVLIDDPVVYDEALSFVQAVMPQ 245 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 Y ++ Y+D P+F R IE Q+++ +Q EV LPS G ++I+ TEAL+SID+NS RST+ Sbjct: 246 YENKIKLYQDSTPLFSRYQIEAQIETAYQREVKLPSGGSIVIDTTEALISIDINSSRSTK 305 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IEDTAL TNLEAA+EIARQLRLRD+ GLIV+DFIDM KN R VE ++K++L+ DR Sbjct: 306 GSDIEDTALNTNLEAADEIARQLRLRDIGGLIVIDFIDMTSNKNQREVENRMKDALEIDR 365 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S+ALS+LR +EE Sbjct: 366 ARVQVGRISRFGLLEMSRQRLRPSLGETSGHVCPRCDGTGTIRDMRSLALSLLRLIEEEA 425 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + + +V +L N KR I+ E+R I+++ F + + Sbjct: 426 AKENTAQVRAVVPLEVSSFLSNDKRQDIIAIESRHSAEISIIPNPNFQTPHFEVLRVREG 485 Query: 572 QALVN--------TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVS 621 +++ + + ++ V A P E L I I Sbjct: 486 ESVADQVSFEIMYEEELATEATPPVRETAAVKAVATTRAPSPKETKEPGLLSKIGSAISG 545 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 S+ K++ R + ++ + N + S + N+ Sbjct: 546 LFSSEEEPKKKTSNNRSNSNRSNSGNKNRNNGNRNNNRRNQSDNRNQSNGGRNNNQRNGK 605 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + EN S P + + + N++S+ K + RR+ Sbjct: 606 TNNRRQEN--TSKPDAANKQDKKPNNNSEKSNDKPKQQARRR 645 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 44/103 (42%), Positives = 60/103 (58%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD E ++Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 1 MLINATQSEELRVALVDGQRLYDLDIEPTTRQQKKANIYKGKITRVEPSLEAAFVDFGAE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ S R + Q V + Sbjct: 61 RHGFLPLKEISREYFKQSTSGRPNIKDVIEEGQEVVVQVDKEE 103 Score = 37.6 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 32/147 (21%), Gaps = 14/147 (9%) Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 + + ++ + + + + E + K++ RRR R Sbjct: 593 SNGGRNNNQRNGKTNNRRQENTSKPDAANKQDKKPNNNSEKSNDKPKQQARRRNRSNKQQ 652 Query: 644 --------------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + V + E N Sbjct: 653 APLDDKVARKIEAVEQPKSSTNKVEEPKAKAKPDAKKQSEAKPTNKANSTPEKTEKVETK 712 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + P+ E +++ I T Sbjct: 713 HSTQVQTAEQPKAEKDSTAKPAIESNT 739 >gi|254448184|ref|ZP_05061647.1| ribonuclease E [gamma proteobacterium HTCC5015] gi|198262310|gb|EDY86592.1| ribonuclease E [gamma proteobacterium HTCC5015] Length = 914 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 203/586 (34%), Positives = 323/586 (55%), Gaps = 19/586 (3%) Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 E + P+D+ + +++ IK Q L++Q+ KEERGNKGAA+TT +SLAGRY V Sbjct: 71 KEINRRYLPDDIETNDNGRPNVKDGIKEGQELIIQVEKEERGNKGAAITTNISLAGRYLV 130 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 MP++ + +SR+I + +E + + +P G GVI+RTAG RT E++ DF+YL Sbjct: 131 AMPHSPRSGGVSRRIEGEERAQV-REAMQDMTIPDGTGVIVRTAGVGRTSEELQWDFDYL 189 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++W+ + + A + P L+Y+E N+I RA+RD Y DI EI++ +++A DFM L Sbjct: 190 AQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAGIHKQANDFMSLA 249 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 M + R ++ YED P+F R IE Q++S Q EV LPS G ++++ TEAL SID+NS R Sbjct: 250 MQNDLRKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPTEALTSIDINSAR 309 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +T+ I++TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM K+ R VE +L+++++ Sbjct: 310 ATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQREVENRLRDAVR 369 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 DRARVQ IS FGLLEMSRQR+R S+ ES+ +VC C+G G IRS S+AL++LR +E Sbjct: 370 IDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSIESLALAVLRIME 429 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 E L+ +I DV ++LN+KR + E E R + + +V L + +E+ Sbjct: 430 EEALKENTGRVIAQLPVDVATFMLNEKRQQVAELENRNSIDLLIVPNKALETPHYVVERV 489 Query: 569 SPVQALVNTGH----KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 N + ++ + + +E + + ++ +E+ Sbjct: 490 RLSDKEANAKRTSYEQATVAEESYVPELRSDKTPVEEPAVQTVAPVAPPQVEQKPKKKEA 549 Query: 625 T-------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 G KR + ++ + +++ G ++ +N + + + Sbjct: 550 APLGLLARLIQWLFGNQDKRPSKGQKGKQQRNNNRGGGRNNNRGGRNNNRNRNNRNQNNN 609 Query: 672 DITNHNLLENGA-HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 D N +N + G +N S + + +N+S + K Sbjct: 610 DKKNKQRSDNRSGGGRQQNKGKSDNKNDNRQSKGNNNSDNGDQNKD 655 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 52/76 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ LD E ++Q K NIY +TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDY 78 RHGFLPF EI+ Y Sbjct: 62 AERHGFLPFKEINRRY 77 >gi|260549181|ref|ZP_05823402.1| ribonuclease E [Acinetobacter sp. RUH2624] gi|260407909|gb|EEX01381.1| ribonuclease E [Acinetobacter sp. RUH2624] Length = 1109 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 207/568 (36%), Positives = 319/568 (56%), Gaps = 10/568 (1%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQSTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEIAYNPDGF 489 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A + + S +EA + + ++ + +T + ++ Sbjct: 490 APSSYERTEATRSSEKELGYESSEWHLEEADHAHVTAPASKNGSAQKKTSHTTQPVVQQP 549 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 ++ P + ++ + + + ++ GA + V Sbjct: 550 AAQKAASPCA------WLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQFGQV 603 Query: 693 SIPPVSTPEMESSNS---SSDPIVKKTR 717 ++P V+ +N+ S P+ ++ R Sbjct: 604 AVPAVAEVAPVQTNNAYISQSPVKQEVR 631 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|189423825|ref|YP_001951002.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ] gi|189420084|gb|ACD94482.1| ribonuclease, Rne/Rng family [Geobacter lovleyi SZ] Length = 741 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 202/651 (31%), Positives = 318/651 (48%), Gaps = 15/651 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ + + + E + T G++ +E A ++ I Sbjct: 12 PEEARVAIVQDGRLMELNIEISGKEQTKGNIYKGVVVRVEPGLQAAFVDIGQKKPGFIQ- 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 D+ + + PE K R+ IQEV++ Q L+VQ+ K+ R KGAA+T+YLS Sbjct: 71 MGDLHPDSWQWREDIPETERK---RRPRIQEVLRRGQELIVQVEKDARDMKGAALTSYLS 127 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP ISRKI + RK LK + L+VPAG G I+RT R+ E+ Sbjct: 128 LPGRYMVLMPG-DDAAGISRKIEDNATRKELKALVAELQVPAGYGYIVRTEAVGRSSDEL 186 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 K+D +YL+ + + + A VY++ +I R IRD + DI E++V + ++A Sbjct: 187 KKDLDYLVGVHERILSQAAEIKGAGEVYQDAGVIIRTIRDYFSDDIDEVLVDDKAACQQA 246 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 DF K +MP ++V+ +++ PIF + +E Q+D L++ V+LPS G ++I TEALVS Sbjct: 247 IDFFKEIMPGCEKLVKLHKEKRPIFSKYQLEEQIDQLYEKRVSLPSGGSLVIEPTEALVS 306 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+S+ E +EDTA +TNLEAA E+ARQLRLRDL GL+V+DFIDM + K+N+ VE+ Sbjct: 307 IDVNSGKSSGEKGVEDTAFKTNLEAAAEVARQLRLRDLGGLVVIDFIDMRDNKHNKEVER 366 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK++LK D+ARV +G IS FG++EMSRQRI ++ ++ C +C+G G ++S ++A+ Sbjct: 367 TLKDALKSDKARVNLGRISQFGMMEMSRQRIAKNINDAIHLECPHCEGRGRVKSVEAMAV 426 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S LR V + + +V +LLN+K+ + + E + + + + Sbjct: 427 SFLRKVHAAAAKGQVAEVRGGLPLEVAYFLLNRKKRELAQIENDYEIVVTIKGKPSFLLN 486 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +E + Q E V E++ P E Sbjct: 487 QLELETVRKEKQREEAVELETRQQQPVFEMVEPEAVGATESVTPSEGELGAEPAPKKRRK 546 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN--VIDDSFDMYMEPSDITNHNLL 679 + +R A D +D +S +N VI EP Sbjct: 547 RKRKKKGGERGVELAVTDQADLALDNSGAADTASAENEEVISAQLAEQQEPVAKKRRRTR 606 Query: 680 ENGAHGFTENYDV-----SIPPVSTPEMESSNSS---SDPIVKKTRWWKRR 722 T++ + + P V E +S P + +R Sbjct: 607 SKKKPVVTKDAEAQDIHQTPPAVDQVEAPASVPVPEHEKPARPEKPSRPKR 657 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 4/97 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLI+ H EE RV +++D R+ EL+ E K+Q KGNIY V RVEP LQAAFVD Sbjct: 1 MSRKMLINVLHPEEARVAIVQDGRLMELNIEISGKEQTKGNIYKGVVVRVEPGLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQ 97 G + GF+ ++HPD +Q R+ + + + Sbjct: 61 IGQKKPGFIQMGDLHPDSWQW----REDIPETERKRR 93 >gi|237800338|ref|ZP_04588799.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023195|gb|EGI03252.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1093 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 220/671 (32%), Positives = 329/671 (49%), Gaps = 51/671 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQVG IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 573 --------------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + AP + + Sbjct: 488 EAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTP 547 Query: 601 EALLPIP--------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + P ++ + + + RR R+ + ++ Sbjct: 548 APVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPAAEQRPARNEERRNGRQQSRGRNN 607 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + + + + E + Sbjct: 608 RRDEERKPREERAPREERAERAPREERAPREERAPREERAVREPREAREDSAPREERPAR 667 Query: 707 SSSDPIVKKTR 717 +S + ++ R Sbjct: 668 TSRERKPREAR 678 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|15834813|ref|NP_296572.1| ribonuclease G [Chlamydia muridarum Nigg] gi|270284978|ref|ZP_06194372.1| ribonuclease E [Chlamydia muridarum Nigg] gi|270289001|ref|ZP_06195303.1| ribonuclease E [Chlamydia muridarum Weiss] gi|301336375|ref|ZP_07224577.1| ribonuclease E [Chlamydia muridarum MopnTet14] gi|7190231|gb|AAF39067.1| ribonuclease G [Chlamydia muridarum Nigg] Length = 512 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 166/566 (29%), Positives = 287/566 (50%), Gaps = 68/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + ++Q+AF++ Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFIN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +GF IH ++D + + Sbjct: 60 IDERENGF-----IH---------------------------ISDVLENSKKFEQMFDID 87 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + S+ET E I+E++K + Sbjct: 88 ADSDQSEPLSEETSE--------------------------------APIEELLKLDSPV 115 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P+ R LK++ R E Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA S + + + + L+ W ++ E + P L+YEE +++K+A+ Sbjct: 175 MPQNMGLICRTASISASTEALINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K +++ Y++ K + P A + Y D P+F R IE ++D + Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLSKYSPDTAVKIEYYRDSVPMFERFNIEKEIDRATK 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNI 354 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538 C YC G I++ S+ + I R +++ + ++ + H ++ Y+ ++ Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTHLCLVVHPEIAHYMKQEQDDVE 474 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 +V + + + + + Sbjct: 475 LVRLAKQLKAKLQINTSDSIHLNHYQ 500 >gi|66044883|ref|YP_234724.1| ribonuclease E and G [Pseudomonas syringae pv. syringae B728a] gi|63255590|gb|AAY36686.1| Ribonuclease E and G [Pseudomonas syringae pv. syringae B728a] Length = 1120 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 224/671 (33%), Positives = 327/671 (48%), Gaps = 45/671 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 28 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 87 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 88 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 147 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 148 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 206 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 207 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 266 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 267 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 326 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 327 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 386 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 387 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 446 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 447 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 506 Query: 574 LVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN-------------- 618 ++ + A + + I L+ + + N Sbjct: 507 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAAPAPTP 566 Query: 619 --------------------------IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 V + +R R + Sbjct: 567 APAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRGR 626 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + E + E S + Sbjct: 627 NNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREESTPREERP 686 Query: 713 VKKTRWWKRRK 723 + TR K R+ Sbjct: 687 ARTTRERKPRE 697 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 18 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFG 77 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 78 SERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 122 >gi|332308461|ref|YP_004436312.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175790|gb|AEE25044.1| ribonuclease, Rne/Rng family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 487 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 124/567 (21%), Positives = 217/567 (38%), Gaps = 85/567 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV ++ + ++E+ E K+ + GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLINVT-PSESRVALIENGILQEVHIERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLE--IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 G ++ FL + IH + D E + + + + + V G + Sbjct: 60 IGLDKAAFLHASDIAIHSE-----VED------EVSSSHLEKRDIRELVRDGQNIVVQVV 108 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + A + + S V +V + E ++ + +QE Sbjct: 109 KDQIGTKGARLTTDITIPSRYLVFMPSVEHVGVSQRIEDEAERERL--KSLVQEYCSENG 166 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 +++ E + R++ + + K+ Sbjct: 167 GFILRTAAEGVKAQELRQDADFL-------------------RRLWEKIRSRMKKKAHIL 207 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 E +LR I+ D + + + L Y G+ Sbjct: 208 YEDLPLARRVLR-DFVGTELDRIRIDSKLSFHELQQFTREYVPELHRLLEYYPGDRPIFD 266 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 + D +E + Sbjct: 267 LYD-------------------------------------------------VENESQRS 277 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 + V L S GY+II+QTEA+ +ID+N+G +E+T TN+EA IARQLRLR+ Sbjct: 278 LERRVDLKSGGYIIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATSAIARQLRLRN 337 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L G+I++DFIDM + + R V L+ + KDRA++ + + GL+EM+R+R R S+ Sbjct: 338 LGGMILIDFIDMADSDHQRRVIHSLESATSKDRAKINIHGFTALGLIEMTRKRTRESLEH 397 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 C CKG G +++ +V I+R + Y A +V+ VV LL ++ Sbjct: 398 ILCGECPVCKGRGTVKTVETVCFEIMREIVRVNRAYDADKFVVYAAPSVVEALLGEESHM 457 Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565 + E E I V + + + Sbjct: 458 LAELEVFVSKQIKVHTELLYNQDKYDV 484 >gi|84394339|ref|ZP_00993061.1| ribonuclease E [Vibrio splendidus 12B01] gi|84375032|gb|EAP91957.1| ribonuclease E [Vibrio splendidus 12B01] Length = 1061 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 205/678 (30%), Positives = 322/678 (47%), Gaps = 54/678 (7%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV++ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + ++ AP L+++E N+I RAIRD +DI EI++ + A+ ++L+ P Sbjct: 191 WGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++Y+ P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+++++ DR Sbjct: 311 GSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE--------------------- 610 + + + + +A ++ E V Q I + Sbjct: 491 EEFDLLSYLLPTKLEALKEAESKEPVEQTIRPKKIEEPALKGFAAPAQSAPTPAPAPKAV 550 Query: 611 SLEDIQDNIVSE--------------------------ESTGVIRKRRRRRRRRRPATDH 644 + ++ E E + + R R D Sbjct: 551 EEKKVEPAATQEPSLIGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNRNNGNRQRRDR 610 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 +D + ++ D E + N EN + E Sbjct: 611 NDNRRRNQRGDRGEQRNERGDRS-EQRNERGDNRNENRDNKRRRKPVRDEKTEEQKEAAP 669 Query: 705 SNSSSDPIVKKTRWWKRR 722 + K+ R K R Sbjct: 670 QQTRQPRKPKQDRRNKPR 687 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEER 109 Score = 42.3 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 2/112 (1%) Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-DAGVVSDVSSIQNVIDDSFDMYMEPS 671 E + E + R +RRR+P D + + + D +P Sbjct: 628 ERGDRSEQRNERGDNRNENRDNKRRRKPVRDEKTEEQKEAAPQQTRQPRKPKQDRRNKPR 687 Query: 672 DITNHNLLENGAHGFTENYD-VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 D + + E + PE + + + K R +R+ Sbjct: 688 DEQKQQEEQVPSKLAEEGLQLAAEAQADKPEAPKAKPEAKAVKIKERRQRRK 739 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 14/155 (9%), Positives = 40/155 (25%), Gaps = 10/155 (6%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + P D+ + + + S+ E+ ++ Sbjct: 657 RDEKTEEQKEAAPQQTRQPRKPKQDRRNKPRDEQKQQEEQVPSKLAEEGLQLAAEAQADK 716 Query: 627 VIRKR----------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + RR+RR+ + + N + S + + ++ Sbjct: 717 PEAPKAKPEAKAVKIKERRQRRKLNKLVRVKDQQAQAEADNNADNASKEQKAQTANHEQA 776 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 E V+ E + + P Sbjct: 777 VAQEQKVVEQVGATQVNAEQTEQEEPKQRRNRRSP 811 Score = 38.4 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 9/137 (6%), Positives = 38/137 (27%), Gaps = 4/137 (2%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 ++ ++ + ++ K E ++ + ++ ++ RR +P + Sbjct: 631 DRSEQRNERGDNRNENRDNKRRRKPVRDEKTEEQKEAAPQQTRQPRKPKQDRRNKPRDEQ 690 Query: 645 HDAGVVSDVSSIQN----VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + + D P ++ + + Sbjct: 691 KQQEEQVPSKLAEEGLQLAAEAQADKPEAPKAKPEAKAVKIKERRQRRKLNKLVRVKDQQ 750 Query: 701 EMESSNSSSDPIVKKTR 717 +++++D K+ + Sbjct: 751 AQAEADNNADNASKEQK 767 >gi|330502587|ref|YP_004379456.1| RNAse E [Pseudomonas mendocina NK-01] gi|328916873|gb|AEB57704.1| RNAse E [Pseudomonas mendocina NK-01] Length = 1016 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 216/605 (35%), Positives = 314/605 (51%), Gaps = 26/605 (4%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED----V 152 + A+ D D+ I + ++ A I E S+ +A D S Sbjct: 9 EELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSERHGFLPLK 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + I++V+K Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFSKAPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 128 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 NPRAGGISRRIEGEER-NELREALNGLNAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLW 187 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++E + + AP L+Y+E N+I RAIRD +DI E++V + EA F++ +MP Y Sbjct: 188 SAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQY 247 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A ++ YED P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 ASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATKG 307 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++E+L+ DRA Sbjct: 308 SDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRA 367 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQVG IS FGLLEMSRQR+R S+ E++ VC C G G IR S++L+ILR +EE L Sbjct: 368 RVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEAL 427 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V +LLN+KR +I + E R I ++ L F +++ Sbjct: 428 KDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDS 487 Query: 573 ALV-------NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ A + + EA + S + + + Sbjct: 488 PEALSGQTSYEIAATAENEEAAAHPAAATRTLVRQEAAIKAAPRSSAPVAAEPQPAPLAP 547 Query: 626 GVIRKRR--------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + +PA + +N S + Sbjct: 548 TKSPEPSLFKGLVKSLVSLFAGKEEEAQPAVTEKKSSERPPREERRNGRQQSRNRGGRRD 607 Query: 672 DITNH 676 D Sbjct: 608 DERKS 612 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 62/107 (57%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ ++ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI +Y+ + +K+ + + G+ Sbjct: 61 RHGFLPLKEISREYFSKAPEGGRVNIKDVLKEGQEVIVQVEKEERGN 107 >gi|28898836|ref|NP_798441.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633] gi|153839695|ref|ZP_01992362.1| ribonuclease E [Vibrio parahaemolyticus AQ3810] gi|260879490|ref|ZP_05891845.1| ribonuclease E [Vibrio parahaemolyticus AN-5034] gi|260898211|ref|ZP_05906707.1| ribonuclease E [Vibrio parahaemolyticus Peru-466] gi|260899348|ref|ZP_05907743.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus AQ4037] gi|28807055|dbj|BAC60325.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633] gi|149746788|gb|EDM57776.1| ribonuclease E [Vibrio parahaemolyticus AQ3810] gi|308088384|gb|EFO38079.1| ribonuclease E [Vibrio parahaemolyticus Peru-466] gi|308093512|gb|EFO43207.1| ribonuclease E [Vibrio parahaemolyticus AN-5034] gi|308110270|gb|EFO47810.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus AQ4037] Length = 1023 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 193/518 (37%), Positives = 289/518 (55%), Gaps = 6/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 191 WSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + + +A + E D I + Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEP 528 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 >gi|330973867|gb|EGH73933.1| ribonuclease E [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1101 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 225/671 (33%), Positives = 327/671 (48%), Gaps = 45/671 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+T+++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTSFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKV--------GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI---------- 615 ++ + AP V Q+ A+ P + Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAAPAPTP 547 Query: 616 -----------------------QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 V + +R R + Sbjct: 548 APAPAAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRGR 607 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + E + E S + Sbjct: 608 NNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREESTPREERP 667 Query: 713 VKKTRWWKRRK 723 + TR K R+ Sbjct: 668 ARTTRERKPRE 678 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|239500867|ref|ZP_04660177.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter baumannii AB900] Length = 1110 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D V+ ++ Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ +P S + ++N + + ++ GA Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V++P V+ SN+ S P+ + R Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|169797346|ref|YP_001715139.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter baumannii AYE] gi|213155839|ref|YP_002317884.1| ribonuclease E [Acinetobacter baumannii AB0057] gi|215484786|ref|YP_002327021.1| Ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294] gi|301345640|ref|ZP_07226381.1| ribonuclease G and E [Acinetobacter baumannii AB056] gi|301511839|ref|ZP_07237076.1| ribonuclease G and E [Acinetobacter baumannii AB058] gi|301597320|ref|ZP_07242328.1| ribonuclease G and E [Acinetobacter baumannii AB059] gi|332852952|ref|ZP_08434462.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150] gi|332867956|ref|ZP_08437944.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113] gi|169150273|emb|CAM88170.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter baumannii AYE] gi|213054999|gb|ACJ39901.1| ribonuclease E [Acinetobacter baumannii AB0057] gi|213988011|gb|ACJ58310.1| Ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294] gi|332728888|gb|EGJ60243.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150] gi|332733657|gb|EGJ64816.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113] Length = 1110 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D V+ ++ Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ +P S + ++N + + ++ GA Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V++P V+ SN+ S P+ + R Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|330891480|gb|EGH24141.1| ribonuclease E [Pseudomonas syringae pv. mori str. 301020] Length = 1033 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 206/608 (33%), Positives = 307/608 (50%), Gaps = 48/608 (7%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN + Sbjct: 1 REYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRA 60 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW ++ Sbjct: 61 GGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIK 119 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA + Sbjct: 120 EASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKI 179 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ IE Sbjct: 180 KLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGSDIE 239 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRARVQ+ Sbjct: 240 ETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQI 299 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 300 GRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALKDRT 359 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ---- 572 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 360 AEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSPEAH 419 Query: 573 -----------------------------ALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + + AP + + + Sbjct: 420 NSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAVAPAPTPAPV 479 Query: 604 LPIP--------------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 P ++ + + + RR R+ + ++ Sbjct: 480 AHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAEQRPARNEERRNGRQQSRGRNNRRD 539 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + + + + + E + +S Sbjct: 540 EERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREDSAPREERPARTSR 599 Query: 710 DPIVKKTR 717 + ++ R Sbjct: 600 ERKPREAR 607 >gi|184156730|ref|YP_001845069.1| ribonuclease G and E [Acinetobacter baumannii ACICU] gi|332873141|ref|ZP_08441098.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059] gi|183208324|gb|ACC55722.1| Ribonuclease G and E [Acinetobacter baumannii ACICU] gi|322506619|gb|ADX02073.1| Ribonuclease E RNase E [Acinetobacter baumannii 1656-2] gi|323516496|gb|ADX90877.1| ribonuclease G and E [Acinetobacter baumannii TCDC-AB0715] gi|332738653|gb|EGJ69523.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059] Length = 1110 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D V+ ++ Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ +P S + ++N + + ++ GA Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V++P V+ SN+ S P+ + R Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|260556239|ref|ZP_05828458.1| ribonuclease E [Acinetobacter baumannii ATCC 19606] gi|260410294|gb|EEX03593.1| ribonuclease E [Acinetobacter baumannii ATCC 19606] Length = 1110 Score = 294 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D V+ ++ Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ +P S + ++N + + ++ GA Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V++P V+ SN+ S P+ + R Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|193076231|gb|ABO10860.2| ribonuclease E [Acinetobacter baumannii ATCC 17978] Length = 1110 Score = 294 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D V+ ++ Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ +P S + ++N + + ++ GA Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V++P V+ SN+ S P+ + R Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|166203325|gb|ABY84671.1| ribonuclease E [Solanum lycopersicum] Length = 935 Score = 294 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 148/646 (22%), Positives = 277/646 (42%), Gaps = 66/646 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL + ++ EL E ++YL VT++ P + AFV+ G + Sbjct: 274 ILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQCDSVYLGVVTKLAPHMGGAFVNIGTS 333 Query: 65 RHGFLPFLEIHPD---YYQIPFS--DRQA--------LLKESNIAQTDSEAVAD------ 105 R F+ +I P+ + PF R+ +L+E+ + + + Sbjct: 334 RPSFM---DIKPNREPFVFPPFCHDSREKVINGASVDMLEENLGLPRNKSTLEEVDADEI 390 Query: 106 ------------------DVTHGDVTIPNDHSLEE-VAPIANFSQETEEESIISANNDVV 146 D GD + E + ET E ++ + Sbjct: 391 DDADIEDESMEYMDSEFGDHESGDACDILEVLAENCNGSVTEHGLETHSEKYPEESSGIG 450 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 ++ + + +R ++ ++VQ+VKE G KG +T Y L R+ Sbjct: 451 YRGQNPTIERAMNGKRISQRDESKWVQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRF 510 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 VL+P IS+KI + + P G G+ +RT A + E+++D E Sbjct: 511 WVLVP-RGNTIGISKKIAGVERTR--LRVIAKTLQPQGYGLTVRTVAAGHSLNELQKDLE 567 Query: 267 YLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316 L+ W ++ E A ++ ++++ ++D + ++ ++V + Sbjct: 568 GLLSTWKSIIEHAKSAALAADEGVDGAVPVMLHQAMGQTLSVVQDYFSDKVNSLVVDSPR 627 Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 Y E ++++ + P+ V + P+F IE +++++ V L + GY++I QT Sbjct: 628 TYHEVTNYLQEMAPNLCERVELHGTRTPLFDEYNIEEEINNILSKRVPLDNGGYLVIEQT 687 Query: 377 EALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434 EALVSIDVN G + E L NL AA +IAR++RLRD+ G+IVVDFIDM + Sbjct: 688 EALVSIDVNGGHCVLGQGTSQEMAILNVNLAAARQIAREIRLRDIGGIIVVDFIDMLDDS 747 Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C C G G + Sbjct: 748 NKRLVYEEVKKAVERDRSTVKVSELSRHGLMEITRKRVRPSVTFMISEPCMCCHGTGRVE 807 Query: 495 SQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYEA 544 + ++ I R + L I+ + YL + KR + + Sbjct: 808 ALATAYSKIEREICRLLSTTDLKADPENPKSWPRFILRVDQYMSNYLTSGKRTRLAILSS 867 Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 V + + + F ++ + + + P+ Sbjct: 868 SLKVWLLLKVARGFTKGTFELKPLTGDKEYKGDERETSISVLRPTE 913 >gi|169634492|ref|YP_001708228.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter baumannii SDF] gi|169153284|emb|CAP02390.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter baumannii] Length = 1110 Score = 294 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 482 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D V+ ++ Sbjct: 483 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 535 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ +P S + ++N + + ++ GA Sbjct: 536 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 595 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V++P V+ SN+ S P+ + R Sbjct: 596 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 632 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|323491686|ref|ZP_08096864.1| ribonuclease G [Vibrio brasiliensis LMG 20546] gi|323314048|gb|EGA67134.1| ribonuclease G [Vibrio brasiliensis LMG 20546] Length = 489 Score = 294 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 122/565 (21%), Positives = 213/565 (37%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLINVT-PSETRVAMIEGGTLQEIHVEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I P + E+ Q +++ V G + Sbjct: 60 IGLEKAAFLHASDIVPH---------TECVAENEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E+ + K+ + Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSEEERNRLKK--VVGHYCDENGGF 168 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +++ E +K + + R + ++R++ + L Sbjct: 169 IIRTAAEGADDKELSQDAAF------------------LKRLWSKVMERRSKYKTRATLY 210 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G+ + +I D + + L EG+ + Sbjct: 211 GELGLSQRILRDFVGTELNKILVDSRTEFENLKEFTSEYVPELTDKLELYEGDKPIFDMY 270 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D ++ + Sbjct: 271 DTEN-------------------------------------------------EIQRSLE 281 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+QTEA+ ++D+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 282 RKVDLKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM ++ V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMASDEHRNRVLTSLEAALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ SV ILR + Y A +V+ V L + + Sbjct: 402 CSSCPTCEGRGSVKTVESVCYEILREITRVNRAYDADKFVVYASPAVAESLQGDESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486 >gi|330975221|gb|EGH75287.1| ribonuclease E [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1098 Score = 294 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 223/671 (33%), Positives = 326/671 (48%), Gaps = 45/671 (6%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ C C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIFCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDSP 487 Query: 574 LVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN-------------- 618 ++ + A + + I L+ + + N Sbjct: 488 EAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAAPAPTP 547 Query: 619 --------------------------IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 V + +R R + Sbjct: 548 APAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQQSRGR 607 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + E + E S + Sbjct: 608 NNRRDEERKPREERAPREERAERAPREERAPREERAPREERTVREPREAREESAPREERP 667 Query: 713 VKKTRWWKRRK 723 + TR K R+ Sbjct: 668 ARTTRERKPRE 678 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|262393761|ref|YP_003285615.1| ribonuclease E [Vibrio sp. Ex25] gi|262337355|gb|ACY51150.1| ribonuclease E [Vibrio sp. Ex25] Length = 1024 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 196/588 (33%), Positives = 302/588 (51%), Gaps = 8/588 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 69 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 129 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 188 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 247 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 248 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 307 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 308 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 367 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 368 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 427 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 428 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 487 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +A + E D + P E + + Sbjct: 488 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 545 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 +++ + G+ S + ++ Sbjct: 546 PEAKKKEQKVEQEEKPGLFSRLFKALGSFLFGGSEEVKEEPKPQEEKK 593 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 61 RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 106 Score = 38.0 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 10/128 (7%), Positives = 31/128 (24%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + +D + E+ + + ++ V Sbjct: 653 QQNRNQKRKPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVK 712 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R+RR+ + +A + + +P++ +N + Sbjct: 713 ERRQRRKLNKSVRVKDQEAVEKKTEETAVKTQEMVETKVEKPTEAAVETQQDNKQAESKQ 772 Query: 689 NYDVSIPP 696 + P Sbjct: 773 RRNRRSPR 780 >gi|109896518|ref|YP_659773.1| ribonuclease G [Pseudoalteromonas atlantica T6c] gi|109698799|gb|ABG38719.1| RNAse G [Pseudoalteromonas atlantica T6c] Length = 487 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 124/567 (21%), Positives = 217/567 (38%), Gaps = 85/567 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV ++ + ++E+ E K+ + GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLINVT-PSESRVALIENGILQEVHIERHTKRGLVGNIYRGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLE--IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 G ++ FL + IH + D E + + + + + V G + Sbjct: 60 IGLDKAAFLHASDIAIHSE-----VED------EVSSSHLEKRDIRELVRDGQNIVVQVV 108 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + A + + S V +V + E ++ + +QE Sbjct: 109 KDQIGTKGARLTTDITIPSRYLVFMPSVEHVGVSQRIEDEAERERL--KSLVQEYCSENG 166 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 +++ E + R++ + + K+ Sbjct: 167 GFILRTAAEGVKAQELRQDADFL-------------------RRLWEKIRSRMKKKTHIL 207 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA 298 E +LR I+ D + + + L Y G+ Sbjct: 208 YEDLPLARRVLR-DFVGTELDRIRIDSKLSFHELQQFTREYVPELHRLLEYYPGDRPIFD 266 Query: 299 IRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSL 358 + D +E + Sbjct: 267 LYD-------------------------------------------------VENESQRS 277 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 + V L S GY+II+QTEA+ +ID+N+G +E+T TN+EA IARQLRLR+ Sbjct: 278 LERRVDLKSGGYIIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATSAIARQLRLRN 337 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L G+I++DFIDM + + R V L+ + KDRA++ + + GL+EM+R+R R S+ Sbjct: 338 LGGMILIDFIDMADADHKRRVIHSLESATSKDRAKINIHGFTALGLIEMTRKRTRESLEH 397 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 C CKG G +++ +V I+R + Y A +V+ VV LL ++ Sbjct: 398 ILCGECPVCKGRGSVKTVETVCFEIMREIVRVNRAYDADKFVVYAAPSVVEALLGEESHM 457 Query: 539 IVEYEARFGVSINVVIGIELADKLFYI 565 + E E I V + + + Sbjct: 458 LAELEVFVSKQIKVHTELLYNQDKYDV 484 >gi|262280822|ref|ZP_06058605.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202] gi|262257722|gb|EEY76457.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202] Length = 1118 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 212/577 (36%), Positives = 318/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L +P GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E V + ++ L + I+ Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTILPHPHLETPHYEIQ------ 483 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D + + Sbjct: 484 --------YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPAANNTAG 535 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ + + A S + ++N + + + ++ GA Sbjct: 536 QKKVNQPAQPAAAQPSTQKAASPCAWLENLFVQKQAKTVDQSRSAQNAAASIEQMVNTGA 595 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V +P V+ SN+ S P ++ R Sbjct: 596 VSRGQFGQVVVPAVAEVVSAPSNNAYISQSPAKQEVR 632 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|83644954|ref|YP_433389.1| ribonucleases G and E [Hahella chejuensis KCTC 2396] gi|83632997|gb|ABC28964.1| Ribonucleases G and E [Hahella chejuensis KCTC 2396] Length = 1056 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 212/635 (33%), Positives = 333/635 (52%), Gaps = 11/635 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ + I E S+ +A D + Sbjct: 12 EELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I+++++ Q +++Q+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 72 EISREYFKSQPQKGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFISLAGRYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK+ GL VP MG+I+RTAG R+ E++RD +YL++ Sbjct: 132 NNPRAGGISRRIEGDDRDQ-LKDAMSGLTVPKDMGLIIRTAGVGRSSKELQRDLDYLLQF 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 WD++R + + AP L+Y+E N++ RA RD +DI E+++ + +++A +F+K +MP+ Sbjct: 191 WDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDALNFVKAVMPN 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + ++ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 251 FENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TALQTNLEAA+EIARQLRLRD+ GLIV+DFIDM KN R VE +LKE+L+ DR Sbjct: 311 GGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVENRLKEALELDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ E+ ++C CKG G IR S+ALS++R +EE Sbjct: 371 ARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLALSVMRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + + V YLLN+KR + + + R GV + VV + F +++ Sbjct: 431 FKERTAEVRAICPISVATYLLNEKRENLAKTQKRHGVKVIVVPNSHMDTPHFEVQRIRDD 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 A V+ +E + E + +++ E G++++ Sbjct: 491 NANVSEISYNVRPEME--EKNPVESLLHKEVVRQEAAVKTIVPSSTPTPPSEEVGLLKRL 548 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN---GAHGFTE 688 R++ + ++ S Q D +N G E Sbjct: 549 RQKVSKMFSGEKKDSDLKITVAESPQTSQDKDAGRRKVKVRDRQDGQRDNQRQGDSRQAE 608 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + D + + + + RR+ Sbjct: 609 SRDGGQDNRRGNRGRNDDRNQRRNERNDGQKDRRQ 643 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 56/78 (71%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD ES ++Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLP EI +Y++ Sbjct: 62 AERHGFLPLKEISREYFK 79 >gi|254229868|ref|ZP_04923273.1| ribonuclease E [Vibrio sp. Ex25] gi|151937637|gb|EDN56490.1| ribonuclease E [Vibrio sp. Ex25] Length = 1027 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 196/588 (33%), Positives = 302/588 (51%), Gaps = 8/588 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +A + E D + P E + + Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 548 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 +++ + G+ S + ++ Sbjct: 549 PEAKKKEQKVEQEEKPGLFSRLFKALGSFLFGGSEEVKEEPKPQEEKK 596 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 Score = 38.0 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 10/128 (7%), Positives = 31/128 (24%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + +D + E+ + + ++ V Sbjct: 656 QQNRNQKRKPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVK 715 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R+RR+ + +A + + +P++ +N + Sbjct: 716 ERRQRRKLNKSVRVKDQEAVEKKTEETAVKTQEMVETKVEKPTEAAVETQQDNKQAESKQ 775 Query: 689 NYDVSIPP 696 + P Sbjct: 776 RRNRRSPR 783 >gi|269967346|ref|ZP_06181407.1| ribonuclease E [Vibrio alginolyticus 40B] gi|269828054|gb|EEZ82327.1| ribonuclease E [Vibrio alginolyticus 40B] Length = 1024 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 196/588 (33%), Positives = 301/588 (51%), Gaps = 8/588 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +A + E D + P E + + Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 548 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 +++ + G+ S + + Sbjct: 549 PEAKKKEQNVEQEEKPGLFSRLFKALGSFLFGGSEETKEEQKPQEEKK 596 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 10/127 (7%), Positives = 32/127 (25%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + +D + E+ + + ++ V Sbjct: 657 QNRNQKRKPKAQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVKE 716 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 +R+RR+ + +A + + + +P++ +N + Sbjct: 717 RRQRRKLNKSVRVKDQEAIEKNAEETAVKTQETVETKVEKPTEAAVEAQQDNKQAESKQR 776 Query: 690 YDVSIPP 696 + P Sbjct: 777 RNRRSPR 783 >gi|126640478|ref|YP_001083462.1| ribonuclease E [Acinetobacter baumannii ATCC 17978] Length = 1041 Score = 293 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 319/577 (55%), Gaps = 27/577 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 2 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 61 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L VP GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 62 NPKGGGISRQISGSVREE-LKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 120 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 121 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 180 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 181 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 240 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 241 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 300 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 301 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 360 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I Sbjct: 361 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEI------- 413 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIR 629 D APS + E E L SE D V+ ++ Sbjct: 414 -------AYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAA 466 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGA 683 +++ +P S + ++N + + ++ GA Sbjct: 467 AQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGA 526 Query: 684 HGFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V++P V+ SN+ S P+ + R Sbjct: 527 VSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVR 563 >gi|330900158|gb|EGH31577.1| ribonuclease E [Pseudomonas syringae pv. japonica str. M301072PT] Length = 860 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 220/614 (35%), Positives = 316/614 (51%), Gaps = 19/614 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRAR Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRAR 367 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 VQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L+ Sbjct: 368 VQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALK 427 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 428 DRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDS- 486 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 S + E E + + V + Sbjct: 487 ----PEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAAA 542 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM----------YMEPSDITNHNLLENGA 683 PA H+ + + + + + E N Sbjct: 543 PAPTPAPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVAEQRPARNEERRNGRQ 602 Query: 684 HGFTENYDVSIPPV 697 N Sbjct: 603 QSRGRNNRRDEERK 616 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|168003555|ref|XP_001754478.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694580|gb|EDQ80928.1| predicted protein [Physcomitrella patens subsp. patens] Length = 727 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 162/646 (25%), Positives = 286/646 (44%), Gaps = 58/646 (8%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI+ S R+ +L + +V E E + K GNIYL +V ++ P + FVD GG Sbjct: 73 EILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGG 132 Query: 64 NRHGFLPFLEI---HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R L L+I Y P L +++ + V +++ D + Sbjct: 133 PR---LALLDIARNQYPYTFPPVCGSGNHLSTDSVSGGSLQDVDLNLSDEDANFTEEEEE 189 Query: 121 ----------------------------EEVAPIANFSQETEEESIISANNDVVSNVEDV 152 V + E ++S + Sbjct: 190 EEEEEEEDEEDNKDEDEDEEPYEEGIARSIVVDRVSGEAENFKDSPEEKVQVKKLSKAWE 249 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + F R++ ++ ++VQ+ KE G KG +T + SLAGR+ VL+P Sbjct: 250 PHRQGSPITVNFGRKFSKWRNVEEGMPIIVQVKKESMGKKGPRLTAFPSLAGRFWVLIP- 308 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S +IT P R+ ++ P +G+ +RT + E++RD LM W Sbjct: 309 RGNSVGVSARITGPERRR--LKLLAQKLQPEDLGITVRTEAIGHEQEELERDLTRLMDAW 366 Query: 273 DNVRELAL----------NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 + E A + P L++ E IRDL+ + +S ++V + ++E Sbjct: 367 KEIMEKAAAAAVAVERGEEAAVPVLLHREMGQTLTIIRDLFTEKVSRVVVDSAQSFQEVI 426 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++++ + P V Y PIF + +E LD V LP+ GY+++ +TEALVSI Sbjct: 427 NYLQEVAPHLMNRVVLYSGKVPIFDKFNVESDLDKFFSERVKLPNGGYLVMQETEALVSI 486 Query: 383 DVNSGRSTREHCI--EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 DVN G H + + L NL AA++IA ++RLRD+ G+IVVDFIDM+ ++ + V Sbjct: 487 DVNGGTGMLGHSMKQREAILNVNLAAAKQIAHEIRLRDIGGIIVVDFIDMDNHEDEKLVY 546 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++++ ++++DR++V + IS +GL+EM+R+R+R SV + C CKG G + + + Sbjct: 547 EEMRRAIQRDRSKVSISEISEYGLMEMTRKRVRPSVTYTIHSSCACCKGTGRVEALETTL 606 Query: 501 LSILRSVEEYLLQYTA--------HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 I R++ L + I++ ++ +L + K+ I++ V IN+ Sbjct: 607 SKIERAIRRVLADHPDVSSDASTWPQILLRVEPSMLEFLKSWKKKRIIQLGHSLRVWINL 666 Query: 553 VIGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 +G+EL+ F + E + G S S + + Sbjct: 667 KLGMELSHGQFEVTEVPRTSSKKSSAGVPSASPSTISQQEAAVTAS 712 >gi|91227383|ref|ZP_01261772.1| ribonuclease E [Vibrio alginolyticus 12G01] gi|91188647|gb|EAS74937.1| ribonuclease E [Vibrio alginolyticus 12G01] Length = 1021 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 196/588 (33%), Positives = 301/588 (51%), Gaps = 8/588 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + + A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 ++ + I+EV+ Q ++VQ+ KEERG+KGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LK LE+P GMG+I+RTAG ++ E++ D L+ Sbjct: 132 NNPRAGGISRRIEGDERTQ-LKAALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ A ++ AP L+++E N+I RAIRD +DI EI++ Y AK+ ++L+ P Sbjct: 191 WGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + V++YE P+F IE Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ Sbjct: 251 FLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATK 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+ S+ E++ +C C G G +R S+ALS+LR +EE Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 L+ ++ + YLLN+KR ++ E V I VV ++ F + + Sbjct: 431 LKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFEVIRVREG 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +A + E D + P E + + Sbjct: 491 EEFDLISYLLPKKLEAMKEAEGKEPAEVD--VKPKRIEEPVLKGFAAPSQTAPAPAAKPA 548 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 +++ + G+ S + + Sbjct: 549 PEAKKKEQNVEQEEKPGLFSRLFKALGSFLFGGSEETKEEQKPQEEKK 596 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES + K NIY ++TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDY------YQIPFSDRQALLKESNIAQTDSEAVA 104 RHGFLP EI +Y YQ S ++ L + + + Sbjct: 62 AERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEER 109 >gi|297831502|ref|XP_002883633.1| glycoside hydrolase starch-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329473|gb|EFH59892.1| glycoside hydrolase starch-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 991 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 151/673 (22%), Positives = 277/673 (41%), Gaps = 69/673 (10%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 + +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ Sbjct: 324 STTILINSSICTVQRIAVLEGEKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 383 Query: 62 GGNRHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTH 109 G RH F+ +I + + PF D L A + E + D Sbjct: 384 GSARHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSINDIPAPHEIEHASYDFEA 440 Query: 110 GDVTIPNDHSLEEV---------------------------APIANFSQETEEESIISAN 142 + + + E +E I Sbjct: 441 SSLLDIDSNDPGESFHDDDDEHENDEYHVSDALVGLVNGTVVNHGAVEVGSENGLIPLER 500 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 V ++ S K IQ ++ ++VQ+VKE G KG +T Y L Sbjct: 501 EHSVDSLVSNPSVSKTSKAMPSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKL 558 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 R+ VL+ + +S+KI+ + ++ P G G+ +RT A + E++ Sbjct: 559 RSRFWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQ 615 Query: 263 RDFEYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIV 312 +D E L+ W N+ + A +S P L++ ++D + + +++V Sbjct: 616 KDLEGLLLTWKNITDEAKSSALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVV 675 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 + Y E +++ + P V ++ P+F IE +++ + V L + G ++ Sbjct: 676 DSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYDIEEEIEGILSKRVPLSNGGSLV 735 Query: 373 INQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 I QTEALVSIDVN G + + E L+ NL A +IAR++RLRD+ G+IVVDFIDM Sbjct: 736 IEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAGRQIAREIRLRDIGGIIVVDFIDM 795 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 ++ N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C Sbjct: 796 ADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHAT 855 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIV 540 G + + + I + + L + I+ S + +L KR + Sbjct: 856 GRVEALETSFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLA 915 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + V I + + F ++ + + H+V + + Sbjct: 916 ILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKK 975 Query: 601 EALLPIPKSESLE 613 L+P + S + Sbjct: 976 LTLIPKKEKTSGK 988 >gi|293610197|ref|ZP_06692498.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827429|gb|EFF85793.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 1107 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 213/576 (36%), Positives = 318/576 (55%), Gaps = 26/576 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L +P GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E V + V+ L + I+ Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHYEIQ------ 483 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVSEESTGVIRK 630 D APS + E E L SE E + + + Sbjct: 484 --------YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPAANNAAN 535 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684 +++ + +P S + ++N + + ++ GA Sbjct: 536 QKKANQAAQPTAQASAQKTASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAV 595 Query: 685 GFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V P V+ SN+ S P+ ++ R Sbjct: 596 SRGQFGQVVAPAVAEVTSAPSNNAYISQSPVKQEAR 631 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|78224383|ref|YP_386130.1| ribonuclease G [Geobacter metallireducens GS-15] gi|78195638|gb|ABB33405.1| RNAse G [Geobacter metallireducens GS-15] Length = 500 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 149/565 (26%), Positives = 242/565 (42%), Gaps = 68/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MAN+++I+ S ETR+ ++ + + EL E +K I GNIY KV RV P +QAAFVD Sbjct: 1 MANELVINTS-SHETRIALIENGTIAELYIERSREKGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ E + +G+ L Sbjct: 60 IGLEKAAFLYVADV---------------------FDAMEEFDSFMDRNGEDGEGEQQVL 98 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + PI QE +E + + + + + + + L Sbjct: 99 QPLHPIEELLQEGQEILVQVSKEPIGTKGARITS-----------------HISLPGRHL 141 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + G + V G I R ++L L Sbjct: 142 VYMPTVDHVGISRRIEEEPERERLKEIVERMKPQNGGFIVRTAAEGKSEEDLVSDMNYLT 201 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +++ I D + + IR Sbjct: 202 KLWDE--VVKRNDKGHAPSLIHADLDVTQK---------------------------VIR 232 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ +D+S I+V + + + F+ MP + Y+D PIF G+EV++ Sbjct: 233 DILTEDVSRIVVDSKTEHDKIVQFISTFMPKMKYSMELYDDEEPIFDHFGLEVEISRALG 292 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR++ Sbjct: 293 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNIG 352 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+E++K D+++ + IS GL+EM+R+R+R S+ Sbjct: 353 GIIIIDFIDMEKEVNREKVFTALEEAMKADKSKTNILKISELGLVEMTRKRVRESIGRMM 412 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+++V I R + +L + H V L +++R + Sbjct: 413 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGTKATLTVHPQVADLLYDEERRGLE 472 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E +F I V + F I Sbjct: 473 ELEKKFKKRITVRAKPGFHQEQFEI 497 >gi|297172315|gb|ADI23292.1| ribonucleases G and E [uncultured actinobacterium HF0770_13M05] Length = 940 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 202/558 (36%), Positives = 294/558 (52%), Gaps = 10/558 (1%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ + + IQ+VI Q LVQ+ KEERGNKGAA++T++SLAGRY VL Sbjct: 68 KEISRTYFNTRSTPNQGRVNIQDVINEGQECLVQVEKEERGNKGAALSTFMSLAGRYMVL 127 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I L++ LE P GMG+I+RTAG ++ E++ D +YL+ Sbjct: 128 MPNNPRSGGISRRIEGEERDS-LRDAMSELEFPDGMGIIIRTAGVDKSADELQWDLDYLL 186 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 +LW+ ++ ++ AP L+Y+E N+I R IRD DISE+++ E Y+EA DF++ +M Sbjct: 187 QLWEAIQRAEKDNRAPALIYQETNVIVRTIRDNLRSDISEVLIDSEDAYKEAADFIEEVM 246 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P Y ++ Y D P+F R IE Q++S Q EV LPS G V+I+ TEALVSID+NS R+ Sbjct: 247 PHYRDRIKLYADSTPLFSRYQIESQIESAFQHEVKLPSGGSVVIDPTEALVSIDINSARA 306 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TAL TNLEAAEE+ARQLRLRD+ GLIV+DFIDM +N R+VE +++E+L+ Sbjct: 307 TKGADIEETALTTNLEAAEEVARQLRLRDVGGLIVIDFIDMLASRNQRAVENRVREALET 366 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR Q+G IS FGL EMSRQR+R S+ E T++VC C G G IR S++L+ILR +EE Sbjct: 367 DRARTQLGRISRFGLFEMSRQRLRPSLEEITSEVCPRCSGQGRIRDVESLSLAILRIMEE 426 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 L+ + + ++ YLLN+KRA + E EAR + +V + +++ Sbjct: 427 ESLKERSSIVRAVVPLNISAYLLNEKRADVAEIEARTKTHLVIVPNAAFETPNYEVQRIR 486 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 G SY+ + L S E + + Sbjct: 487 DDDVNEEVG--------VRSYELADIVTEVEIPLGRERPQPSREKAAVGAIEPNNPRPSP 538 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 R R V + + + + Sbjct: 539 SSRTRPTSNEQVRGAR-PSVFRRFVRSLFWAGEDEGTIPTGASRGRQRTRQVASPSRANA 597 Query: 690 YDVSIPPVSTPEMESSNS 707 D + T + S Sbjct: 598 KDRNPKATDTDANQKRES 615 Score = 123 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 56/75 (74%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+++ EE RV V+ ++ +LD E+ +++ KG+IY AK+ RVEPSL+AAFVD+G + Sbjct: 1 MLINSTQPEEVRVAVVDGQKLYDLDIENRSRERKKGSIYKAKINRVEPSLEAAFVDFGAD 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLPF EI Y+ Sbjct: 61 RHGFLPFKEISRTYF 75 >gi|89094315|ref|ZP_01167256.1| ribonuclease E [Oceanospirillum sp. MED92] gi|89081374|gb|EAR60605.1| ribonuclease E [Oceanospirillum sp. MED92] Length = 947 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 207/518 (39%), Positives = 294/518 (56%), Gaps = 6/518 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 P + I+EV+K ++VQ+ KEERGNKGAA+TT++SLAGRY VLMP Sbjct: 72 EISREYFTQPPTRGSRPNIKEVLKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE G+ +P MG+I+RTAG R+ E++ DFEYL L Sbjct: 132 NNPRAGGISRRIEGEDRAQ-LKEALSGVNIPKQMGIIVRTAGVGRSSEELQWDFEYLQTL 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ + AP L+Y+E N++ RA+RD DI E+++ + + +AK+F+K +MP+ Sbjct: 191 WTAIKQASEEKPAPFLIYQESNVVIRAVRDYLRSDIGEVLIDDPQVFEDAKNFVKQVMPT 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 Y ++ Y + P+F R IE Q+++ Q EVTLPS G ++I+ TEALVSID+NS R+TR Sbjct: 251 YESKIKHYSEQTPLFNRFQIETQIETAFQREVTLPSGGSIVIDPTEALVSIDINSARATR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRD+ GL+V+DFIDM KN R VE +L+++LK DR Sbjct: 311 GGDIEETALHTNLEAADEIARQLRLRDIGGLVVIDFIDMTPIKNQREVENRLRDALKLDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 ARVQ+G IS FGLLEMSRQR+R S+ E+ VC C G G IR S+ALSILR +EE Sbjct: 371 ARVQMGRISRFGLLEMSRQRLRPSLAETRGVVCPRCNGQGTIRDTESLALSILRLIEEES 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + I V YLLN+KR + + E R V + +V + + + + Sbjct: 431 GKDRTAQIRAILPVTVATYLLNEKRHAVHDIELRQDVRVVIVPNPNMETPHYEVVRLRDD 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + T + P D IE A + Sbjct: 491 HTVATTNDASYTMQPEPEDDDPIEASSTQAAPAREQAA 528 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 1/110 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY-QIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI +Y+ Q P + +KE T+ D G+ Sbjct: 62 AERHGFLPLKEISREYFTQPPTRGSRPNIKEVLKEGTEVIVQVDKEERGN 111 >gi|33519869|ref|NP_878701.1| ribonuclease E [Candidatus Blochmannia floridanus] gi|33504214|emb|CAD83476.1| ribonuclease E [Candidatus Blochmannia floridanus] Length = 710 Score = 291 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 176/509 (34%), Positives = 270/509 (53%), Gaps = 3/509 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 ++ + + ++ + + E + ++ + Sbjct: 10 QKEELRVALVDGQRLYDLDIEIIGHEQKKANIYKGKIVRIEPSLEAVFVDYGSEKHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + + + I+E+++ Q L+VQI KEERG KGAA+TT++SLAG Y VLM Sbjct: 70 IKEISQEYFLCSSSHNKSSIKEILREGQELIVQIDKEERGTKGAALTTFISLAGSYLVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN K ISR+I + LKE L++P GM +I+RTAG ++ ++ D ++ Sbjct: 130 PNNPKSGGISRRIEGNERIE-LKETLSTLDLPEGMSLIIRTAGVGKSIEALEWDLTSRLQ 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLM 329 W ++ A +AP L++++ N+I RA RD DI EI++ AK+ + L Sbjct: 189 HWKTIQNTASTQLAPFLIHQDSNVIVRAFRDYLKPDIGEILIDNPDILNIAKEHITSLGR 248 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + + ++ Y P+F IE Q++S EV LPS G +II+ TEAL +ID+NS RS Sbjct: 249 PDFVKKIKLYNGDIPLFSHYQIESQIESAFLHEVRLPSGGSIIIDTTEALTAIDINSARS 308 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IEDTA TNLEA +EIARQLRLRD+ GLIV+DFIDM K+ R +E L+ ++++ Sbjct: 309 TKGLDIEDTAFNTNLEATDEIARQLRLRDVGGLIVIDFIDMISVKHQREIENTLRTTVRQ 368 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLE+SRQR+R S+ ES+ VC C G G IR S++LSILR +EE Sbjct: 369 DRARIQIGRISKFGLLELSRQRLRPSLDESSHHVCPRCSGTGSIRDNKSLSLSILRLIEE 428 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568 L+ + + + YLLN+KR I + E R GV +V + + + + Sbjct: 429 EALKENTYEVHAIVPVAIATYLLNEKRKAISDIEQRQKGVRAIIVPYELMKTPNYEVRRI 488 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECV 597 + + + + S+ E Sbjct: 489 RKGETNNKPSYLLATHHHNESFPSISEKT 517 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 42/108 (38%), Positives = 60/108 (55%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E +Q K NIY K+ R+EPSL+A FVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIEIIGHEQKKANIYKGKIVRIEPSLEAVFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 +HGFLP EI +Y+ S ++ +KE + D G Sbjct: 62 SEKHGFLPIKEISQEYFLCSSSHNKSSIKEILREGQELIVQIDKEERG 109 >gi|161829769|ref|YP_001596416.1| ribonuclease [Coxiella burnetii RSA 331] gi|161761636|gb|ABX77278.1| ribonuclease, Rne/Rng family [Coxiella burnetii RSA 331] Length = 718 Score = 291 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150 A+ DD D+ I ++ + I + E S + ++ Sbjct: 12 DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + I V+K Q L+VQ+ KEERG KGAA+TT++SLAG + VLM Sbjct: 72 EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + L+E L +P GMG+I+RTAG R K E++ D + L+R Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ V++ A+ P+L+++E ++I RAIRD +D+ EI++ E + A+ ++ + P Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y + P+F R IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM +N R VE L+ +L +D Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+RSS+ ST C C G IRS S+ LSI+ ++E Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + D+ YL+N+KR + E + V I +V + L+ + + Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRGIEHHYPVKITIVPNQYMETPLYQLRQIKI 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 A + G + S + + AL Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525 >gi|154706471|ref|YP_001424928.1| ribonuclease E [Coxiella burnetii Dugway 5J108-111] gi|154355757|gb|ABS77219.1| ribonuclease E [Coxiella burnetii Dugway 5J108-111] Length = 720 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 187/515 (36%), Positives = 286/515 (55%), Gaps = 7/515 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150 A+ DD D+ I ++ + I + E S + ++ Sbjct: 12 DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + I V+K Q L+VQ+ KEERG KGAA+TT++SLAG + VLM Sbjct: 72 EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + L+E L +P GMG+I+RTAG R K E++ D + L+R Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ V++ A+ P+L+++E ++I RAIRD +D+ EI++ E + A+ ++ + P Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y + P+F R IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM +N R VE L+ +L +D Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+RSS+ ST C C G IRS S+ LSI+ ++E Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + D+ YL+N+KR + + E + V I +V + L+ + + Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRDIEHHYPVKITIVPNQYMETPLYQLRQIKI 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 A + G + S + + AL Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525 >gi|71892189|ref|YP_277921.1| ribonuclease E [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796295|gb|AAZ41046.1| ribonuclease E [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 866 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 176/427 (41%), Positives = 256/427 (59%), Gaps = 3/427 (0%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 ++ I+E++ Q L+VQI KEERGNKGAA+TT++SLAG Y VLMPN K ISR Sbjct: 82 PSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPKSSGISR 141 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 +I LKEI LE+P GM +I+RTAG ++ ++ D ++ W ++ A Sbjct: 142 RIEGNDRI-GLKEILSTLELPEGMSLIIRTAGLGKSIEALEWDLTSRLQHWKTIKNTAAK 200 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYE 340 +AP L++++ N+I RA RD DI EI++ K AK+ + L P + + ++ Y Sbjct: 201 HLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLAKEHITSLGRPDFTKKIKFYN 260 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST+ IEDTA Sbjct: 261 GDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARSTKGTDIEDTAF 320 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 TNLEA +EIARQLRLRD+ GLIV+DFIDM ++ R +E LK ++ +DRAR+Q+G IS Sbjct: 321 HTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIENSLKIAVHQDRARIQIGHIS 380 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 FGLLE+SRQR+ +S+ ES+ +C C G G IR S++LSILR +EE L+ + + Sbjct: 381 KFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLSLSILRLIEEEALKDNTYEVH 440 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 + YLLN+KR I + E R GV +V ++ + I + + + Sbjct: 441 AIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMKTPNYEIRRIRKGETYNKPSY 500 Query: 580 KVGSDSQ 586 + ++ Sbjct: 501 LLATNQD 507 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 1/110 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ +Q K NIY K+ R+EPSL+A FVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY-QIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLP EI +Y+ P S + +KE + D G+ Sbjct: 62 VERHGFLPIKEISHEYFLSSPSSYNKFNIKEILCEGQELIVQIDKEERGN 111 >gi|165920603|ref|ZP_02219574.1| ribonuclease, Rne/Rng family [Coxiella burnetii RSA 334] gi|165916805|gb|EDR35409.1| ribonuclease, Rne/Rng family [Coxiella burnetii RSA 334] Length = 720 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 187/515 (36%), Positives = 286/515 (55%), Gaps = 7/515 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150 A+ DD D+ I ++ + I + E S + ++ Sbjct: 12 DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + I V+K Q L+VQ+ KEERG KGAA+TT++SLAG + VLM Sbjct: 72 EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + L+E L +P GMG+I+RTAG R K E++ D + L+R Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ V++ A+ P+L+++E ++I RAIRD +D+ EI++ E + A+ ++ + P Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y + P+F R IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM +N R VE L+ +L +D Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+RSS+ ST C C G IRS S+ LSI+ ++E Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + D+ YL+N+KR + + E + V I +V + L+ + + Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRDIEHHYPVKITIVPNQYMETPLYQLRQIKI 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 A + G + S + + AL Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525 >gi|33151445|ref|NP_872798.1| ribonuclease E [Haemophilus ducreyi 35000HP] gi|33147665|gb|AAP95187.1| ribonuclease E [Haemophilus ducreyi 35000HP] Length = 980 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 206/626 (32%), Positives = 316/626 (50%), Gaps = 8/626 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I N ++ + I E S+ +A D S Sbjct: 12 EELRVALVDGQRLFDLDIENPGHEQKKSNIYKGKITRVEPSLEAAFVDYGSERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F + I+++IK Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EISREYFPADYVFNGRPNIKDIIKEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP +G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERLE-LKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +++ A + AP L+++E ++I RAIRD +DI EI++ +K + +AK+ ++L+ P Sbjct: 191 WSAIKQSAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + +R YE P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 251 FINRIRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRSTR 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 IE+TAL TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E+ ++DR Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR+Q G IS FGLLEMSRQR+ S+ E+++ VC C+G G IR S+ALSILR VEE Sbjct: 371 ARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKIRDNESIALSILRLVEEEA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + + YLLN+KR I E R V + VV + F + + Sbjct: 431 IKENTAQVHTIVPIQIASYLLNEKRTAISSIEKRHNVQVVVVPNQNMETPHFSVYRLREN 490 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + L + + + S D + A + ++++ + Sbjct: 491 ELLPTLSYDLAKLYEMRSEDSPLYTHQIPSAEENLTTRNEPVITVESVLQSSELNIQPAP 550 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + + A + + + ++ + + + E Sbjct: 551 MPTSANQPSLLNRLIAKIKGLFAKTEEKVEAKPKPKTRNQRERRNRRDRSNRNDRQERKQ 610 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 + P T E KK R Sbjct: 611 AT--PNQTQEDAKPTRQERTEPKKAR 634 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E+ +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIENPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 SERHGFLPLKEISREYF 78 >gi|50083690|ref|YP_045200.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter sp. ADP1] gi|49529666|emb|CAG67378.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter sp. ADP1] Length = 1138 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 207/580 (35%), Positives = 317/580 (54%), Gaps = 24/580 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIASSYLHADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKE+ L VP GM VI+RTAG R++ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 SQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F IE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E GV + V+ L + I+ Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEIQ------ 483 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVSEESTGVIRK 630 + APS + E E L S + + K Sbjct: 484 --------YNPEGFAPSSYERTEATRSSEKELGYESSGWHLEDTEHQHASPVSQEASKAK 535 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684 +++ A S + ++N + + ++ NGA Sbjct: 536 NQQKPASPASAPAATPVKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNNGAV 595 Query: 685 GFTENYDVS-IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + V+ +P ++ + S++ + + T R+ Sbjct: 596 SRGQFGQVAHVPAIAETAPVAVPSNNAYMSQNTTKHDARE 635 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 38/76 (50%), Positives = 50/76 (65%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDY 78 R GFL EI Y Sbjct: 62 AQRQGFLSMREIASSY 77 >gi|288799935|ref|ZP_06405394.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039] gi|288333183|gb|EFC71662.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039] Length = 524 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 151/566 (26%), Positives = 254/566 (44%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D + E ES GN+Y+AKV ++ P L A FVD Sbjct: 1 MTSEIIIDARE-KEISIALLEDKNLVEYQNESRSASFSVGNVYIAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G D H +S Sbjct: 60 LGY---------------------------------------ERDAFLHYLDLGSQFNSY 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ ++ + + + IQ + Q + Sbjct: 81 DKYIKQVQSDRKKLSPFSKALKLPEIK------------------KDSSIQSTLSVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +T LS AGRY VL+P +++ S+ + + LK++ ++ Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRYLVLIPFSNQVSVSSKIKSGEERAR-LKQLIHSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAI 299 GVI+RT + E+ + + L W+ P L+YEE + Sbjct: 182 PK-NCGVIVRTVAEGKRVAELDAELKVLNNRWEAAILKIQKTQKRPQLIYEETGRTIALL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E+ + E K++++L+ P A IV+ Y PIF I Q+ S Sbjct: 241 RDLFNPSFENIYVNDEEVFAEIKNYLELIAPDKASIVKMYSGTVPIFDNFNITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 + Y+II TEAL +DVNSG TR ++ AL NL AA+E+ARQLRLRD Sbjct: 301 GKTINYKHGAYLIIEHTEALHVVDVNSGNRTRSENGQEANALDVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMHLAEDRQLLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAIDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + + C C G G IRS + +++ + + H +H H V YL + Sbjct: 421 NVEETCPTCFGKGKIRSSVLFTEQLESKIDQLINKIGIHKFYLHVHPYVAAYLNKGLWSI 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 +++ ++G ++++ +LA + Sbjct: 481 KRKWQFKYGFGVHIIPSQKLAFLQYE 506 >gi|153208856|ref|ZP_01947078.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177'] gi|212218909|ref|YP_002305696.1| ribonuclease E [Coxiella burnetii CbuK_Q154] gi|120575645|gb|EAX32269.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177'] gi|212013171|gb|ACJ20551.1| ribonuclease E [Coxiella burnetii CbuK_Q154] Length = 720 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150 A+ DD D+ I + + I + E S + ++ Sbjct: 12 DEVRVAITDDSKLIDLDIEIPGQEHKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + I V+K Q L+VQ+ KEERG KGAA+TT++SLAG + VLM Sbjct: 72 EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + L+E L +P GMG+I+RTAG R K E++ D + L+R Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ V++ A+ P+L+++E ++I RAIRD +D+ EI++ E + A+ ++ + P Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y + P+F R IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM +N R VE L+ +L +D Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+RSS+ ST C C G IRS S+ LSI+ ++E Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + D+ YL+N+KR + + E + V I +V + L+ + + Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRDIEHHYPVKITIVPNQYMETPLYQLRQIKI 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 A + G + S + + AL Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525 >gi|319792201|ref|YP_004153841.1| ribonuclease, rne/rng family [Variovorax paradoxus EPS] gi|315594664|gb|ADU35730.1| ribonuclease, Rne/Rng family [Variovorax paradoxus EPS] Length = 1095 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 186/517 (35%), Positives = 281/517 (54%), Gaps = 1/517 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q IQ+ I+ Q L VQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQYFAEGVSASQARIQDAIREGQELTVQVEKEERGNKGAALTTFISLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGDDRAE-LKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + L+Y+E +L+ RAIRD + DI +I++ + Y +A+ FM +MP Sbjct: 189 LWSAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYDQAQQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A V++Y D +F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDM+E KN R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G+IS FGL+EMSRQR++ ++ E ++ C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ + V +V +LLN+KR I + E + V++ +V L + +E+ Sbjct: 429 CLKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPNYKLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ + + Q+ P Sbjct: 489 DDPRLDHIEASYKMADEIEDPTAVTRRSQEPTNKQTP 525 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 66/109 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA ++++ + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFAEGVSASQARIQDAIREGQELTVQVEKEERGN 110 Score = 40.7 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 3/146 (2%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 +D + + + EA + S E DN ++++ + Sbjct: 822 APRGDRGERGERNDGRRERRNDAPPAANEGEARVAEVASADGEQGIDNAGNDQAPRREGE 881 Query: 631 RRRRRRRR-RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 +RR R R R D + G + + + + + + E + Sbjct: 882 EQRRGRSRDRYGRDRRERGPRDENEANNAAETPAAEGAVAAAMEATGESYEAPVARQQQQ 941 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKK 715 ++ PV+ ++ ++ P V++ Sbjct: 942 LPLASEPVAERQVSE--VAAPPEVRE 965 >gi|325124373|gb|ADY83896.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation [Acinetobacter calcoaceticus PHEA-2] Length = 1107 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 214/576 (37%), Positives = 318/576 (55%), Gaps = 26/576 (4%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKEI L +P GM VI+RTAG RT+ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 H +E+TAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM +++N R VE KL+E+ + DRA Sbjct: 310 HDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR ++V E V + V+ L + I+ Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHYEIQ------ 483 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--LEDIQDNIVSEESTGVIRK 630 D APS + E E L SE E + + Sbjct: 484 --------YNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPVANNAAN 535 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684 +++ + +PA S + ++N + + ++ GA Sbjct: 536 QKKANQAAQPAAQASAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAV 595 Query: 685 GFTENYDVSIPPVSTPEMESSNS---SSDPIVKKTR 717 + V P V+ SN+ S P+ ++ R Sbjct: 596 SRGQFGQVVAPAVAEVTSAPSNNAYISQSPVKQEAR 631 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 52/78 (66%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ NR+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI Y+Q Sbjct: 62 AGRQGFLSMREIANSYFQ 79 >gi|332525434|ref|ZP_08401593.1| ribonuclease G [Rubrivivax benzoatilyticus JA2] gi|332108702|gb|EGJ09926.1| ribonuclease G [Rubrivivax benzoatilyticus JA2] Length = 486 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 128/398 (32%), Positives = 203/398 (51%), Gaps = 1/398 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+ + Q L VQ++K+ G KGA ++T +S+AGR V +P+ IS+KI P Sbjct: 87 PPIERHVFEGQTLTVQVIKDAIGTKGARLSTQISIAGRMLVFLPHDDHIG-ISQKIGGPE 145 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 R+ L+ + L G G ILRT + E+ D YL + W +R+ A + L Sbjct: 146 LREQLRSRMQALVGADGGGFILRTNAEEASDAELADDIAYLRKTWAAIRQRAQSKPPGTL 205 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 ++++ +L +R +RDL I + + + + F + P + Y PIF Sbjct: 206 LHQDLSLAERVLRDLTTDATHSIRIDSKLQHEALRVFGETYTPGAVGKLEHYRGERPIFD 265 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 GIE ++ V L S GY+I++QTEAL ++DVN+G EDT +TNLEAA Sbjct: 266 LFGIEEEIAKALARRVDLKSGGYLIVDQTEALTTVDVNTGGFVGARNFEDTIFKTNLEAA 325 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 IARQLRLR+L G+I+ DFIDM + + ++V +L++ L +DR R V + GL+EM Sbjct: 326 GAIARQLRLRNLGGIIIADFIDMTREDHQQAVLAELRKQLARDRTRTTVSGFTQLGLVEM 385 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + C C+G G +++ SV ILR + Q+ V + V Sbjct: 386 TRKRTRESLAHMLCEPCPTCQGRGQVKTARSVCYDILREILREARQFNPKEFRVIASAAV 445 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V LL+++ I G I++ + + + I Sbjct: 446 VEMLLDEESGHIAGLSEFIGKPISLSAEATMNPEQYDI 483 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 4/79 (5%) Query: 1 MANK-MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 MA + +LI+ + +ETRV ++ + V+EL E ++ + GN+YL KV RV P +Q+AFV Sbjct: 1 MATQDILINWA-PQETRVAIVENGAVQELHVERTLERGLVGNVYLGKVARVLPGMQSAFV 59 Query: 60 DYGGNRHGFLPFLEI--HP 76 D G R FL ++ HP Sbjct: 60 DIGLERAAFLHVADLFGHP 78 >gi|212213030|ref|YP_002303966.1| ribonuclease E [Coxiella burnetii CbuG_Q212] gi|212011440|gb|ACJ18821.1| ribonuclease E [Coxiella burnetii CbuG_Q212] Length = 720 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150 A+ DD D+ I ++ + I + E S + ++ Sbjct: 12 DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + I V+K Q L+VQ+ KEERG KGAA+TT++SLAG + VLM Sbjct: 72 EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + L+E L +P GMG+I+RTAG R K E++ D + L+R Sbjct: 132 PNNPRAGGISRRIEGDERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ V++ A+ P+L+++E ++I RAIRD +D+ EI++ E + A+ ++ + P Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y + P+F R IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM +N R VE L+ +L +D Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+RSS+ ST C C G IRS S+ LSI+ ++E Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + D+ YL+N+KR + E + V I +V + L+ + + Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRGIEHHYPVKITIVPNQYMETPLYQLRQIKI 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 A + G + S + + AL Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525 >gi|218261481|ref|ZP_03476292.1| hypothetical protein PRABACTJOHN_01958 [Parabacteroides johnsonii DSM 18315] gi|218223999|gb|EEC96649.1| hypothetical protein PRABACTJOHN_01958 [Parabacteroides johnsonii DSM 18315] Length = 526 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 145/583 (24%), Positives = 259/583 (44%), Gaps = 58/583 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + VL D + EL E+ + G+IYL KV ++ P L A Sbjct: 1 MISELVVDV-QPKEVSIAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNA---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F+++ D H PN ++ Sbjct: 56 ---------AFIDVG--------------------------YKKDAFLHYLDLGPNFNTQ 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ Q+ +++ + + ++ +E + I V+K Q + Sbjct: 81 QKFLKQTLGEQKGDKKLPVISKMQLLPEIE---------------KDGSISNVLKVGQEV 125 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQI KE KG +T+ LS AGRY VL+P K ++ ++ + Sbjct: 126 LVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERAR--LRQLIQSI 183 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P VI+RT+ + E+ + + L++ W+ AP L+YEE +R Sbjct: 184 KPKNFSVIVRTSSEGKRVAELDHELKTLLKRWEENIPKITKVKAPALIYEETARAVALLR 243 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ I V+ Y +D++ L+ P IV++Y PIF I Q+ SL Sbjct: 244 DIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFDNFAITKQIKSLFG 303 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419 VT S Y+II TEA+ IDVNSG ++ ++ TA+ N AA+EIARQLRLRD+ Sbjct: 304 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNTAAADEIARQLRLRDM 363 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM E N + + + + +++ DRA+ + +S FGL++++RQR+R ++ Sbjct: 364 GGIIVVDFIDMSEAANRQKLYEHMLKAMSGDRAKHNILPLSKFGLMQITRQRVRPAMDVD 423 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T++ C C G G I+ S+ ++ + ++ +H H V ++ + + Sbjct: 424 TSEACPTCFGTGTIKPSILFTDSLEGKIDCLVNKHNVKKFALHVHPYVAAFIKSGRFPLS 483 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 +++ ++ + I V+ L + + + ++ Sbjct: 484 WKWKLKYSMGIKVIPNQSLGFLEYKFIDSDKNELDMMEEKEIK 526 >gi|71064833|ref|YP_263560.1| RNAse E [Psychrobacter arcticus 273-4] gi|71037818|gb|AAZ18126.1| RNAse E [Psychrobacter arcticus 273-4] Length = 1405 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 192/537 (35%), Positives = 288/537 (53%), Gaps = 10/537 (1%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R I+++IK L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN +G ISR+I Sbjct: 81 NPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPRGGGISRQI 140 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + + L++P GM VI+RTAG +T+ +++ D +L+ +W ++E Sbjct: 141 SGKLREDMKR-MLGSLDLPKGMSVIIRTAGIGKTQEDLQHDLNHLLNIWQAIQEQNQKYP 199 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 +P LV++E ++ RA+RD DI+EI + E Y EA F+ +MP A +R+Y D Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDIAEIWIDNENAYIEAAGFIDAVMPKQAEKLRKYTDYE 259 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 P+F R IE Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+ + +TA TN Sbjct: 260 PMFSRFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGSDVAETAYHTN 319 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L ++ K DRARVQ G IS FG Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLIDATKYDRARVQFGDISKFG 379 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L+EMSRQR+R S+ EST +C C G G IR S++LSI+R +E+ L+ + Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERQGEVQAEV 439 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 +D+ +LLN+KR ++V E G I ++ L F + Sbjct: 440 PTDIAAFLLNEKRDSLVYLEQDSGTRITILPHAHLESPNFKLHFNRDG---------FAP 490 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 S D ++ + + +E Q + + R Sbjct: 491 SSYERITDTQLQEHSELGYNVDWQTAEKERPEQQPTRQPRQGSDNNNGSQAQVRTNTQQS 550 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 S S ++ +++ ++ + T S P P Sbjct: 551 APTQQQQSTSHSNEHRSNNNSNVTSARAPQTKETPSVPNPQSSQNIVTSSAPVAPQP 607 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+ EE RV + N + + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRILINATQNEEIRVALCNGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR--QALLKESNIAQTDSEAVA 104 R GFLP EI +Y D + L+KE + E Sbjct: 62 SQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEE 105 >gi|29653829|ref|NP_819521.1| ribonuclease [Coxiella burnetii RSA 493] gi|29541092|gb|AAO90035.1| ribonuclease E [Coxiella burnetii RSA 493] Length = 720 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 187/515 (36%), Positives = 285/515 (55%), Gaps = 7/515 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEES------IISANNDVVSNVE 150 A+ DD D+ I ++ + I + E S + ++ Sbjct: 12 DEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSERHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + I V+K Q L+VQ+ KEERG KGAA+TT++SLAG + VLM Sbjct: 72 EISREYFLQDIEGDFDSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + L+E L +P GMG+I+RTAG R K E++ D + L+R Sbjct: 132 PNNPRAGGISRRIEGNERDQ-LRETINQLSLPEGMGLIVRTAGLGRPKEELEWDLKILLR 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ V++ A+ P+L+++E ++I RAIRD +D+ EI++ E + A+ ++ + P Sbjct: 191 YWEAVKQAAVAKPGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y + P+F R IE Q+++ HQ E+ LPS G +II+ +EAL++ID+NS R+T Sbjct: 251 QFVERLKLYREHLPLFSRFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TAL TNLEAAEEIARQLR+RD+ GLIV+DFIDM +N R VE L+ +L +D Sbjct: 311 RGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+RSS+ ST C C G IRS S+ LSI+ ++E Sbjct: 371 RARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTIRSIESLGLSIIHIIQEQ 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + D+ YL+N+KR + E + V I +V + L+ + + Sbjct: 431 ASKAKNIHFQLQAPVDLATYLINEKRELLRGIEHHYPVKITIVPNQYMETPLYQLRQIKI 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 A + G + S + + AL Sbjct: 491 DPASLEHGKGMASYKLTKVFKTEAPQKQEIRALSE 525 >gi|93005113|ref|YP_579550.1| ribonuclease [Psychrobacter cryohalolentis K5] gi|92392791|gb|ABE74066.1| RNAse E [Psychrobacter cryohalolentis K5] Length = 1449 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 194/540 (35%), Positives = 292/540 (54%), Gaps = 2/540 (0%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R I+++IK L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN +G ISR+I Sbjct: 81 NPRDENIKKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPRGGGISRQI 140 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + + L++P GM VI+RTAG +T+ +++ D +L+ +W ++E Sbjct: 141 SGKLREDMKR-MLGSLDLPKGMSVIIRTAGIGKTQEDLQHDLNHLLNIWQAIQEQNQKYP 199 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 +P LV++E ++ RA+RD DISEI + E Y EA F+ +MP A +R+Y D Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDISEIWIDNENAYIEAAGFIDAVMPKQAEKLRKYTDYE 259 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 P+F R IE Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+ + +TA TN Sbjct: 260 PMFSRFNIEKQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGSDVAETAYHTN 319 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L ++ K DRARVQ G IS FG Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMNDNKHQKEVEKRLIDATKYDRARVQFGDISKFG 379 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L+EMSRQR+R S+ EST +C C G G IR S++LSI+R +E+ L+ + Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQIALKERQGEVQAEV 439 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 +D+ +LLN+KR ++V E G I ++ L F + A + + Sbjct: 440 PTDIAAFLLNEKRDSLVYLEQDSGTRITILPHAHLESPNFKLHFNRDGFAPSSYERITDT 499 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-RRRRRRRRRPAT 642 Q S E P + + S + ++ +++ + Sbjct: 500 QLQEHSELGYNVDWQTAEKERPEQQPTRQPRQAADKNSSDQAQARPNAQQSTPTQQQQNS 559 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 H S+ +S + PS + + + P+ Sbjct: 560 TSHSNEHRSNNNSSNVTSARAPQAQETPSAQNPQSSQNIVTPSAPVAPQPTAIAAAQPQA 619 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+ EE RV + + N + + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRILINATQNEEIRVALCKGNHLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR--QALLKESNIAQTDSEAVA 104 R GFLP EI +Y D + L+KE + E Sbjct: 62 SQRQGFLPIREISAEYLSGNPRDENIKKLIKEGDELIVQVEKEE 105 >gi|167041416|gb|ABZ06168.1| putative S1 RNA binding domain protein [uncultured marine microorganism HF4000_006O13] Length = 767 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 203/570 (35%), Positives = 307/570 (53%), Gaps = 18/570 (3%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I+++++ Q ++VQ+ KEERG KGAA+TT++SLAGR+ VLMPN +K +SRKI Sbjct: 107 EKLDIKKLLEEGQEIVVQVSKEERGTKGAALTTFISLAGRFIVLMPNKAKAGGVSRKIMG 166 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + L + L VP G+I+RTAG R+ IE++ D ++L+ +W++++++A+N AP Sbjct: 167 QDREQIL-DSLSNLGVPKEAGLIIRTAGLGRSDIELEWDLKHLLGIWNSIKKMAVNVEAP 225 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+++E NLI RA+RD +ISEIIV E +++AK ++K + P+ + + Y++ P+ Sbjct: 226 ALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDAKKYLKQVTPNNLKKLLYYKETTPL 285 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F + IE Q++S + +V LPS G V+I+ TEALVSID+NSG+ST++ IE TAL+TNLE Sbjct: 286 FTKFQIEHQIESAYSNKVILPSGGSVVIDYTEALVSIDINSGKSTKQSGIESTALKTNLE 345 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 A +EI RQ RLRDL GLIV+DFIDM + +N + VE LK ++K DRA++ +G IS FGLL Sbjct: 346 AVDEITRQCRLRDLGGLIVIDFIDMRQHRNQKQVENALKNAVKSDRAKISLGHISKFGLL 405 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQR+R S+ +S ++C C G G IRS S+AL++LR VEE + ++I S Sbjct: 406 EMSRQRLRPSLGDSAYRICENCSGMGRIRSTESLALAVLRLVEEEARKENTASVIADIPS 465 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 D YLLN+KR I + E R V I ++ EL+ F I+K +A + + Sbjct: 466 DAATYLLNEKRQWIKDIEQRESVHIILIADPELSSVNFSIKKLRKDEANLAEYKQASYKL 525 Query: 586 QAPSYDKNIE----CVWQDEALLPIPKSESLEDIQDNIVS----------EESTGVIRKR 631 N D++ PK + DI D E K Sbjct: 526 AKTIKQDNASLNPISQAMDKSRNLNPKPVTTWDIDDVQTPNLIDRFMFWLENKQNNKVKA 585 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + + + R T GV + + + + G T Sbjct: 586 NQGKNKPRSKTRKSTTGVGGNKRKKSTNKRTTPKRRSAKQESPQKTTAKKGPKQKTAKQG 645 Query: 692 VSIPPV---STPEMESSNSSSDPIVKKTRW 718 E D + K + Sbjct: 646 PKREAAKQGPKREAAKQGPKQDAVKKGPKQ 675 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 92/731 (12%), Positives = 207/731 (28%), Gaps = 37/731 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD E + ++Q K NIY AK++R+EPSL A FVD+G Sbjct: 23 KRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDFG 82 Query: 63 GNRHGFLPFLEIHPDYY---QIPFS--DRQALLKESNIA-----QTDSEAVADDVTHGDV 112 R+GFLPF E+ +YY IP D + LL+E + + +T Sbjct: 83 SARNGFLPFREVSREYYLSEPIPGEKLDIKKLLEEGQEIVVQVSKEERGTKGAALTTFIS 142 Query: 113 TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE 172 L A D +SN+ V + + + I+ Sbjct: 143 LAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNL-GVPKEAGLIIRTAGLGRSDIEL 201 Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 + +L + ++ A M + E + + K+ Sbjct: 202 EWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDA 261 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 K+ + + ++ + F+ ++ + +V + Sbjct: 262 KKYLKQVTPNNLKKLLYYKETT-----PLFTKFQIEHQIESAYSNKVILPSGGSVVIDYT 316 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 + + I S + + + Sbjct: 317 EALVSIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLIVIDFIDMRQHRNQ 376 Query: 353 VQLDSLHQT-------EVTLPSRGYVIINQT------EALVSIDVNSGRSTREHCIEDTA 399 Q+++ + +++L + + +L + + Sbjct: 377 KQVENALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRST 436 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L + + R + A +I D N + +K+ +++ + + A Sbjct: 437 ESLALAVLRLVEEEARKENTASVIADIPSDAATYLLNEK-RQWIKDIEQRESVHIILIAD 495 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 + S +++R K A I+ ++ I +++++ Sbjct: 496 PELSSVNFSIKKLRKDEANLAEYKQASYKLAKTIKQDNASLNPISQAMDKSRNLNPKPVT 555 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L+++ + E + + + S N Sbjct: 556 TWDIDDVQTPNLIDRFMFWL---ENKQNNKV--KANQGKNKPRSK-TRKSTTGVGGNKRK 609 Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 K + P + Q PK ++ + +++ ++ ++ Sbjct: 610 KSTNKRTTPKRRSAKQESPQKTTAKKGPKQKTAKQGPKREAAKQGPKREAAKQGPKQDAV 669 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 DA P T + P ++ Sbjct: 670 KKGPKQDAAKQGPKQDAVKKGPKQDAAKQGPKQDAAKKGP-KKKSEKTRSSKGKSPNITQ 728 Query: 700 PEMESSNSSSD 710 + + Sbjct: 729 RIKDQESKEKS 739 >gi|330250723|gb|AEC05817.1| RNAse E/G-like protein [Arabidopsis thaliana] Length = 1001 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 336 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 395 Query: 65 RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112 RH F+ +I + + PF D L A + E + D + Sbjct: 396 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 452 Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145 + + E +E I Sbjct: 453 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 512 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ + K IQ ++ ++VQ+VKE G KG +T Y L R Sbjct: 513 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 570 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+ + +S+KI+ + ++ P G G+ +RT A + E+++D Sbjct: 571 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 627 Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + L+ W N+ + A ++ P L++ ++D + + +++V Sbjct: 628 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 687 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y E +++ + P V ++ P+F IE +++ + V L + G ++I Q Sbjct: 688 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 747 Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALVSIDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ Sbjct: 748 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 807 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + Sbjct: 808 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 867 Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543 + + I + + L + I+ S + +L KR + Sbjct: 868 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 927 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + V I + + F ++ + + H+V + + L Sbjct: 928 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 987 Query: 604 LPIPKSES 611 +PI K ++ Sbjct: 988 IPIKKEKT 995 >gi|260912463|ref|ZP_05919000.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295] gi|260633435|gb|EEX51588.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295] Length = 524 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 152/566 (26%), Positives = 255/566 (45%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D ++ E E+ GN+Y+AKV ++ P L A FVD Sbjct: 1 MTSEVVIDV-QQKEISIALLEDKKLVEYQSETREVSFSVGNVYVAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 GF D H S Sbjct: 60 V-----GF----------------------------------ERDAFLHYLDLGSQFDSY 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + ++ ++ + + +Q + + Q + Sbjct: 81 AKYLKQVQSDRKKLYPFAKASRLPDLK------------------KDGSVQTTLTSGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +T LS AGRY +L+P K S+ + + LK++ ++ Sbjct: 123 LVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVSVSSKIKSGEERAR-LKQLIHSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 GVI+RT + E+ + + L + W+ E S PHLV+EE + + Sbjct: 182 PK-NCGVIVRTVAEGKRVAELDAELKTLTKYWEEAIEKVQKSQKRPHLVFEETSRAVALL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E ++E + ++ ++ P IV+ Y PIF I Q+ S Sbjct: 241 RDLFNPTYENIYVNDEDVFKEVRHYVSMIAPDKVDIVKLYSGKVPIFDNFNITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRD 418 V Y+II TEAL +DVNSG TR E E AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKAVNYKHGAYLIIEHTEALHVVDVNSGNRTRSEKGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDL 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 S + C C G G I+S + R ++ + + +H H V Y+ + Sbjct: 421 SVDETCPTCFGKGKIKSSILFTDQLERKIDRLVNKIGVKKFYLHVHPYVAAYINKGFVSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 +++ ++G +++V +LA + Sbjct: 481 KRQWQLKYGFGLHIVPSQKLAFLQYE 506 >gi|121605977|ref|YP_983306.1| ribonuclease [Polaromonas naphthalenivorans CJ2] gi|120594946|gb|ABM38385.1| RNAse E [Polaromonas naphthalenivorans CJ2] Length = 1076 Score = 288 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 187/517 (36%), Positives = 283/517 (54%), Gaps = 1/517 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 + + ++ + + + E + D + Sbjct: 10 QAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGEDRHGFLP 69 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + Q I +VI+ Q LLVQ+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 70 FKEISKQYFTQGVSVSQARISDVIREGQELLVQVEKEERGNKGAALTTFVSLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN +G +SR+I + LKE LE P GM +I RTAG R+ E++ D YL++ Sbjct: 130 PNNPRGGGVSRRIEGEDRAE-LKEAMDKLEYPGGMSIIARTAGIGRSAPELQWDLNYLLK 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + L+Y+E +L+ RAIRD + DI +I+ + Y +A+ FM +MP Sbjct: 189 LWTAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQARQFMAHVMP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + V++Y D P+F R IE Q++S + V LPS G ++I+ TEALVS+DVNS R+ Sbjct: 249 EHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAI 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + IE+TA +TNLEAA+E+ARQ+RLRDL GLIV+DFIDMEE +N R VE +L+++L++D Sbjct: 309 KGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENRLRDALRQD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQ G IS FGL+EMSRQR+R ++ E + C C G+G+IR S AL ILR ++E Sbjct: 369 RARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQILRIIQEE 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L+ + +++ DV +LLN+KR+ I + E + +++ +V L + +E+ Sbjct: 429 SLKDSTASVLCQVPVDVASFLLNEKRSEISKIEMKQRINVLLVPNKTLETPNYRLERLKH 488 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ + + Q++ P Sbjct: 489 DDPRLDNIEASYKMADEAEDATTVTRRSQEKHNKQEP 525 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 64/109 (58%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +ML++A+ EE R+ ++ ++ + + E E ++Q KGNIY A VTRVEPSL+A FVDYG Sbjct: 2 KRMLVNATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +RHGFLPF EI Y+ S QA + + + + G+ Sbjct: 62 EDRHGFLPFKEISKQYFTQGVSVSQARISDVIREGQELLVQVEKEERGN 110 >gi|30678102|ref|NP_850987.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana] gi|25991183|gb|AAN76770.1|AF450479_1 endoribonuclease [Arabidopsis thaliana] gi|330250719|gb|AEC05813.1| RNAse E/G-like protein [Arabidopsis thaliana] Length = 996 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 331 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 390 Query: 65 RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112 RH F+ +I + + PF D L A + E + D + Sbjct: 391 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 447 Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145 + + E +E I Sbjct: 448 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 507 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ + K IQ ++ ++VQ+VKE G KG +T Y L R Sbjct: 508 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 565 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+ + +S+KI+ + ++ P G G+ +RT A + E+++D Sbjct: 566 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 622 Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + L+ W N+ + A ++ P L++ ++D + + +++V Sbjct: 623 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 682 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y E +++ + P V ++ P+F IE +++ + V L + G ++I Q Sbjct: 683 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 742 Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALVSIDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ Sbjct: 743 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 802 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + Sbjct: 803 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 862 Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543 + + I + + L + I+ S + +L KR + Sbjct: 863 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 922 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + V I + + F ++ + + H+V + + L Sbjct: 923 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 982 Query: 604 LPIPKSES 611 +PI K ++ Sbjct: 983 IPIKKEKT 990 >gi|289671957|ref|ZP_06492847.1| ribonuclease E [Pseudomonas syringae pv. syringae FF5] Length = 746 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 209/555 (37%), Positives = 292/555 (52%), Gaps = 16/555 (2%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 9 KEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 68 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 69 NPRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLW 127 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP Y Sbjct: 128 TAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQY 187 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 188 ASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKG 247 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ DRA Sbjct: 248 SDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRA 307 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +EE L Sbjct: 308 RVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEAL 367 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 368 KDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRLRDDS 427 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 S + E E + + V + Sbjct: 428 -----PEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAAVKTAPARANAPVPVEAA 482 Query: 633 RRRRRRRPATDHHDAGVVSD----------VSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 P H+ + V E N Sbjct: 483 APAPTPAPTPVAHEPSLFKGLVKSLVSLFATKEEPVVPVVVEKPVAEQRPARNEERRNGR 542 Query: 683 AHGFTENYDVSIPPV 697 N Sbjct: 543 QQSRGRNNRRDEERK 557 >gi|167041972|gb|ABZ06709.1| putative S1 RNA-binding domain protein [uncultured marine microorganism HF4000_141E02] Length = 776 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 200/567 (35%), Positives = 307/567 (54%), Gaps = 16/567 (2%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I+++++ Q ++VQ+ KEERG KGAA+TT++SLAGR+ VLMPN +K +SRKI Sbjct: 107 EKLDIKKLLEEGQDIVVQVSKEERGTKGAALTTFISLAGRFIVLMPNKAKAGGVSRKIMG 166 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + L + L VP G+I+RTAG R+ IE++ D ++L+ +W++++++A+N AP Sbjct: 167 QDREQIL-DSLSNLGVPKEAGLIIRTAGLGRSDIELEWDLKHLLGIWNSIKKMAVNVEAP 225 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+++E NLI RA+RD +ISEIIV E +++AK ++K + P+ + + Y++ P+ Sbjct: 226 ALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDAKKYLKQVTPNNLKKLLYYKETTPL 285 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F + IE Q++S + +V LPS G V+I+ TEALVSID+NSG+ST++ IE TAL+TNLE Sbjct: 286 FTKFQIEHQIESAYSNKVILPSGGSVVIDYTEALVSIDINSGKSTKQSGIESTALKTNLE 345 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 A +EI RQ RLRDL GL+V+DFIDM + +N + VE LK ++K DRA++ +G IS FGLL Sbjct: 346 AVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQVENALKNAVKSDRAKISLGHISKFGLL 405 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EMSRQR+R S+ +S ++C C G G IRS S+AL++LR VEE + ++I S Sbjct: 406 EMSRQRLRPSLGDSAYRICENCSGMGRIRSTESLALAVLRLVEEEARKENTASVIADIPS 465 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 D YLLN+KR I + E R V I ++ EL+ F I++ +A + + Sbjct: 466 DAATYLLNEKRQWIKDIEQRESVHIILIADPELSSVNFSIKRLRKDEANLAEYKQASYKL 525 Query: 586 QAPSYDKNIE----CVWQDEALLPIPKSESLEDIQDNIVS----------EESTGVIRKR 631 N D++ PK + DI D E K Sbjct: 526 AKTIKQDNASLNPISQAMDKSRNLNPKPVTAWDIDDVQTPNLIDRFMFWLENKQNNKVKA 585 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + + + R T GV + + + + G Sbjct: 586 NQGKNKPRSKTRKSTTGVGGNKRKKSTNKRTTPKRRSVKQESPQKKTAKKGPKQGAAKQG 645 Query: 692 VSIPPVST-PEMESSNSSSDPIVKKTR 717 P+ E++ K Sbjct: 646 PKREAAKQGPKREAAKQGPKREAAKQG 672 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 95/738 (12%), Positives = 209/738 (28%), Gaps = 37/738 (5%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ ++ +LD E + ++Q K NIY AK++R+EPSL A FVD+G Sbjct: 23 KRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDFG 82 Query: 63 GNRHGFLPFLEIHPDYY---QIPFS--DRQALLKESNIA-----QTDSEAVADDVTHGDV 112 R+GFLPF E+ +YY IP D + LL+E + + +T Sbjct: 83 SARNGFLPFREVSREYYLSEPIPGEKLDIKKLLEEGQDIVVQVSKEERGTKGAALTTFIS 142 Query: 113 TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE 172 L A D +SN+ V + + + I+ Sbjct: 143 LAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNL-GVPKEAGLIIRTAGLGRSDIEL 201 Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 + +L + ++ A M + E + + K+ Sbjct: 202 EWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDA 261 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 K+ + + ++ + F+ ++ + +V + Sbjct: 262 KKYLKQVTPNNLKKLLYYKETT-----PLFTKFQIEHQIESAYSNKVILPSGGSVVIDYT 316 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 + + I S + + + Sbjct: 317 EALVSIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQ 376 Query: 353 VQLDSLHQT-------EVTLPSRGYVIINQT------EALVSIDVNSGRSTREHCIEDTA 399 Q+++ + +++L + + +L + + Sbjct: 377 KQVENALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRST 436 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L + + R + A +I D N + +K+ +++ + + A Sbjct: 437 ESLALAVLRLVEEEARKENTASVIADIPSDAATYLLNEK-RQWIKDIEQRESVHIILIAD 495 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 + S +R+R K A I+ ++ I +++++ Sbjct: 496 PELSSVNFSIKRLRKDEANLAEYKQASYKLAKTIKQDNASLNPISQAMDKSRNLNPKPVT 555 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L+++ + E + + + S N Sbjct: 556 AWDIDDVQTPNLIDRFMFWL---ENKQNNKV--KANQGKNKPRSK-TRKSTTGVGGNKRK 609 Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 K + P + Q + PK + + +++ ++ +R Sbjct: 610 KSTNKRTTPKRRSVKQESPQKKTAKKGPKQGAAKQGPKREAAKQGPKREAAKQGPKREAA 669 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 +A P + A S Sbjct: 670 KQGPKREAAKQGPKRDAVKKGPKREAAKQGPKQDAAKKGPKQDAVKKGPKKKSEKTRSSK 729 Query: 700 PEMESSN-SSSDPIVKKT 716 + ++ D K+ Sbjct: 730 GKSPNTTQRIKDQESKEK 747 >gi|21672611|ref|NP_660678.1| ribonuclease E [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091169|sp|Q8K9J9|RNE_BUCAP RecName: Full=Ribonuclease E; Short=RNase E gi|21623243|gb|AAM67889.1| ribonuclease E [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 968 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 188/625 (30%), Positives = 305/625 (48%), Gaps = 9/625 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + S ++ + I E S+ + D Sbjct: 12 EELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYGMEKHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I+++++ Q L+VQI KEERG KGAA+TT+++LAG Y VLMP Sbjct: 72 EISKNYFPENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTTFITLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N K ISR++ + LKE+ L++P MG+I+RTAG ++ ++ D ++ Sbjct: 132 NNPKIAGISRRVEGSDRIE-LKELLSSLKIPEKMGLIIRTAGVGKSIKSLQWDLSLRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ + AP L+Y+E N+I RA RD +DI EI++ K A++ + L P Sbjct: 191 WNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDNPKILDIAREHITALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q+DS Q +V LPS G ++++ TEAL +ID+NS RST Sbjct: 251 DFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVDTTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE TA TNLEA EEI+RQLRLRDL GLIV+DFIDM + + +E KL+E +++D Sbjct: 311 RGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTISHQKIIENKLREIVRED 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ SS+ ES+ +C C G G IR S++LSILR +EE Sbjct: 371 RARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + ++ YLLN+KR + E R G +V + + + + Sbjct: 431 ALKENTYEVHAIVPIEIACYLLNEKREAVYAIEKRQAGGKTIIVPNKNMKTPHYLVSRIR 490 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + + ++ + + + L + +E Sbjct: 491 KGEQIRSMSYCLSNVRKNKIFNNIKKEIVDKKHKLNSTLTNISLSDDSFDKQKEEKEKFL 550 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS-DITNHNLLENGAHGFTE 688 +++ A ++ + I+N S +N E Sbjct: 551 RKKNYNNSIINALFNNKNLFFKFIVWIKNSFLKKHIFVKNESFKRNIFQNKKNILFAKKE 610 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV 713 ++ SS ++ Sbjct: 611 EFNSIEEIHKKDNQVSSIDNNKKKQ 635 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+A F+DYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +HGFLP EI +Y+ Sbjct: 62 MEKHGFLPLKEISKNYF 78 >gi|87118929|ref|ZP_01074827.1| ribonuclease E [Marinomonas sp. MED121] gi|86165320|gb|EAQ66587.1| ribonuclease E [Marinomonas sp. MED121] Length = 1029 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 202/569 (35%), Positives = 308/569 (54%), Gaps = 9/569 (1%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ P + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL Sbjct: 68 KEISKTYFSKKPNHGDGRINIKDVLSEGQEVVVQVDKEERGNKGAALTTFVSLAGRYLVL 127 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE GL +P G+I+RTAG R+ E++ D +YL Sbjct: 128 MPNNPRAGGISRRIDGDDRTQ-LKEAMSGLNMPDNGGLIVRTAGVGRSTEELQWDLDYLN 186 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 LW+++ A AP L+Y+E N++ RAIRD +DI E+++ + Y++A +F+ +M Sbjct: 187 TLWNSITGAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSVYQDAMNFVMQVM 246 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + ++QY D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+ Sbjct: 247 PHFKSRIKQYTDQTPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARA 306 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM +N + VE ++K++L+ Sbjct: 307 TKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVENRMKDALEA 366 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQ+G IS FGLLEMSRQR+R S+ E++ VC C G G+IR S+ALS+LR +EE Sbjct: 367 DRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCTGQGFIRDVESLALSVLRLIEE 426 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + I V +LLN+KR I + E R V I +V + F +E+ Sbjct: 427 ECAKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNHVHIILVPNPHMETPHFEVERIR 486 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + V + + P E D+ S+ + V + Sbjct: 487 DDSSSVVQNENSYTLVETPEQPP-YEPRQTDQETRQKAAVTSIAPAAPAPAPSDIKPVSK 545 Query: 630 KRRRRRRRRRP-------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 K + +R + + + S+ + ++ + + N N+ + Sbjct: 546 KAQPVGFFKRILNAIFGVEENKEEKQTENKPSTKKTNPRNNRNTKNRNTRGNNRNVKQVH 605 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDP 711 S + E+ ++ P Sbjct: 606 TEEVESKDSRSTRKSRREQAEAKTNNRKP 634 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 40/75 (53%), Positives = 54/75 (72%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVDYG + Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESGSREQTKANIYKGRITRIEPSLEAAFVDYGAD 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI Y+ Sbjct: 61 RHGFLPLKEISKTYF 75 >gi|296085058|emb|CBI28473.3| unnamed protein product [Vitis vinifera] Length = 934 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 140/609 (22%), Positives = 259/609 (42%), Gaps = 63/609 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL D + EL E ++YL VT++ P + AFV+ G Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIG-- 401 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 I DD +V D +++ Sbjct: 402 ---------IQ--------------------------FAHDDFEEHEVEDDFDVLIKKDL 426 Query: 125 PIANFSQETE-EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + ++E + + + + + ++ ++ ++VQ Sbjct: 427 NGSIVDHDSETINNFLPVELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQKGTKIIVQ 486 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 +VKE G KG +T Y L R+ VL+ ++ +S+KI+ + + P Sbjct: 487 VVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIG-VSKKISGVERTR--LRVIAKTLQPK 543 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGN 293 G G+ +RT A T E+++D E L+ W N+ E A ++ +++ Sbjct: 544 GFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILHRAMG 603 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 ++D + + + ++V + Y E ++++ + P V Y P+F IE Sbjct: 604 QTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEFNIEE 663 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIA 411 +++++ V LP+ G ++I QTEALVSIDVN G E L NL AA++IA Sbjct: 664 EINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAAKQIA 723 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 R+LRLRD+ G+IVVDFIDM + N R V +++K+++++DR+ V+V +S GL+E++R+R Sbjct: 724 RELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 783 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIV 521 +R SV ++ C+ C G G + + + I + + L I+ Sbjct: 784 VRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEICRLLAMTEEKADPENPNSWPRFIL 843 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 + YL + KR + + V I + + F ++ + + +++ Sbjct: 844 MVDRFMCNYLTSGKRTRLAILSSSLKVWILLKVARGFTRGAFEVKPFTDDKVNISSHQGP 903 Query: 582 GSDSQAPSY 590 S + Sbjct: 904 ISMLRPTEA 912 >gi|332977604|gb|EGK14372.1| ribonuclease [Psychrobacter sp. 1501(2011)] Length = 1373 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 197/545 (36%), Positives = 302/545 (55%), Gaps = 16/545 (2%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R+ I+++IK L+VQ+ KEERGNKGAA++TY+SLAGRY VLMPN KG ISR+I Sbjct: 81 NPREENIRKLIKEGDELIVQVEKEERGNKGAALSTYVSLAGRYLVLMPNNPKGGGISRQI 140 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + + L++P GM VI+RTAG +T+ +++ D +L+ +W+ +++ Sbjct: 141 SGKLREDMKR-MLGNLDLPKGMSVIVRTAGIGKTQEDLQHDLNHLLNIWNAIQDQNKKYA 199 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 +P LV++E ++ RA+RD DISEI + E+ + EA+ F+K +MP+ +R+Y D Sbjct: 200 SPRLVHQEAGVVTRAVRDYLRDDISEIWIDNEEAFIEAETFIKAVMPTQIDKLRKYTDFE 259 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 P+F +E Q+++ +Q EV LPS G ++I+QTEALVSID+NS +ST+ + +TA TN Sbjct: 260 PMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALVSIDINSAKSTKGADVAETAYHTN 319 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAA+EIARQLRLRD+ GLIV+DFIDM + K+ + VEK+L E+ K DRARVQ G IS FG Sbjct: 320 LEAADEIARQLRLRDMGGLIVIDFIDMSDHKHQKEVEKRLVEATKYDRARVQFGEISRFG 379 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L+EMSRQR+R S+ EST +C C G G IR S++LSI+R +E+ L+ + Sbjct: 380 LMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIMRQIEQTALKERHGEVQAEV 439 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 +D+ +LLN+KR ++V E G I ++ L F I A + + Sbjct: 440 PTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHLESPNFNIHFNHHGFAPASYERVTDT 499 Query: 584 DSQAPS---YDKNIECVWQDEAL-----LPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 Q S Y+ + + + P + + N V + + Sbjct: 500 QQQETSGLGYEVDWQTAESERPEQQPIRQPRQSAGNAPTAAANTVPTKQAATTPAPTAKN 559 Query: 636 RRRRPAT----DHHDAGVVSDVSS---IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + +P T + V+ +S+ S + + ++ GA Sbjct: 560 QAPQPQTQAPVEAAKPSAVAWLSNLFAPTPQAQMSATVSSADAAQAIEAIVNTGAQSRGA 619 Query: 689 NYDVS 693 VS Sbjct: 620 FGQVS 624 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A+H EE RV + + N + + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 R GFLP EI +Y + + R+ +++ + + G+ Sbjct: 62 SKRQGFLPVREIASEY--LSGNPREENIRKLIKEGDELIVQVEKEERGN 108 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 6/145 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + + ++ + + ++ + E + E + ST Sbjct: 660 ESDNDKDRRRSRNNRSRNKYDKRAKPESRRRQPEKEDRKSNSSVDKSETESSASSQDNST 719 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +R RR G + + Q S D + D + G Sbjct: 720 AKELPKREANSRRDSR------GPIERGETKQPQGKSSQDNRAKQDDRNKSSDRNGGRAQ 773 Query: 686 FTENYDVSIPPVSTPEMESSNSSSD 710 N D + + E E++ S+ Sbjct: 774 NERNVDPNEVNLRVTEAETTLKKSE 798 >gi|326201572|ref|ZP_08191443.1| ribonuclease, Rne/Rng family [Clostridium papyrosolvens DSM 2782] gi|325988172|gb|EGD48997.1| ribonuclease, Rne/Rng family [Clostridium papyrosolvens DSM 2782] Length = 494 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 127/565 (22%), Positives = 238/565 (42%), Gaps = 77/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N++++D S E RV +L D + E+ E + + GNIY KV+ V P +QAAF+D Sbjct: 1 MVNEIIVDVS-PGEIRVGILEDKELAEIHIERTSHQGLVGNIYRGKVSSVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + IP D V+ + ++T Sbjct: 60 IGYEKNAFLYVGD------AIPK----------KEYSDDETEVSSNYEEYNITDILKVGQ 103 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + T+ + + R ++ Sbjct: 104 EITVQVIKEPIGTKGP------------------------------RVSTHITLPGRNLV 133 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L+ ++ T K + E + Sbjct: 134 LLPNADYIGISRRIENDTE--------------------------RQKLKKIAEKLKPQN 167 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + + + ++ + ++ ++ P ++++ NLI R++R Sbjct: 168 MGLIVRTVSEGKEEADFVEDVSFLLKLWAKIKESE----NKGPVPRCIHKDINLIYRSVR 223 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ D+++ I++ EK Y + + ++++ P V ++ + IF IE +++ Sbjct: 224 DLFTWDVNKFIINNEKEYLKVLELVEMISPLLKSRVELFQKDYNIFDYYQIETKIERALS 283 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L GY+II++TEAL IDVN+G+ E +E+T L+TN+EA EIA+QLRLRD+ Sbjct: 284 RKVWLKCGGYIIIDKTEALTVIDVNTGKFVGESNLEETVLKTNVEATREIAKQLRLRDIG 343 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G++++DFIDM ++ + V LK+SLK DR + V ++ GL+EM+R++IR + Sbjct: 344 GIVIIDFIDMNNSEHQQLVLDSLKQSLKSDRTKTIVLGMTELGLVEMTRKKIRQELSTVM 403 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C GAG + + + A++ILR V E++ + + H V + + + Sbjct: 404 SCDCPVCDGAGRVYTGETNAMNILREVREHINCTSVKKFKLEVHPSVAPVIEDNIERFLR 463 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 + + V ++ + I Sbjct: 464 NFTDNKDKKVKVTAVSDIRPAGYRI 488 >gi|115475892|ref|NP_001061542.1| Os08g0323600 [Oryza sativa Japonica Group] gi|38637407|dbj|BAD03665.1| putative endoribonuclease E [Oryza sativa Japonica Group] gi|113623511|dbj|BAF23456.1| Os08g0323600 [Oryza sativa Japonica Group] gi|222640346|gb|EEE68478.1| hypothetical protein OsJ_26881 [Oryza sativa Japonica Group] Length = 1085 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 150/659 (22%), Positives = 276/659 (41%), Gaps = 77/659 (11%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I++S R+ VL D ++ EL E +IYL VT++ P + AFVD G + Sbjct: 415 IVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTKLVPHMGGAFVDIGLS 474 Query: 65 RHGFLPFLEIHPD---YYQIPF-------------SDRQALLKESNIAQTDSEAVADDVT 108 R + + + D Y QI D ++ + TD E ++ Sbjct: 475 RPSLMSIKQ-NRDPFVYPQIVKNAKRDSANFSDYNDDSLPTYEDEDDDMTDGELADEEND 533 Query: 109 HGDVTIPNDHSLEEVA-------------------------------PIANFSQETEEES 137 P + E + E E+ Sbjct: 534 DESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEEKDDEIDDHMEDEYNEDL 593 Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 + ++V ++++ + ++ ++VQ+VKE G+KG ++ Sbjct: 594 LPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQVVKEGLGSKGPTLS 653 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 + L R+ +L+ + +S+KIT + + L P G + RT A + Sbjct: 654 PFPCLRSRFWILV-SRGNKVGVSKKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHS 710 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDI 307 E+++D + L+ W + E A ++ +++ ++D + + + Sbjct: 711 WEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKV 770 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 ++V + Y E ++++ + P V YE PIF IE ++D++ V L + Sbjct: 771 KRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHN 830 Query: 368 RGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425 G ++I QTEALVSIDVN G S + E L+ NLEAA++IAR+LRLRD+ G+IVV Sbjct: 831 GGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQIARELRLRDIGGIIVV 890 Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485 DFIDM + N + V +++K++++KDR+ V V +S GL+E++R+R+R SV ++ C Sbjct: 891 DFIDMTDDTNKKLVFEEMKKAVEKDRSTVGVSELSKLGLMEITRKRVRPSVTFMISEPCP 950 Query: 486 YCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQK 535 C G G + + + I R + L ++ ++ YL + K Sbjct: 951 CCHGIGRVEALDTSFSKIEREICRRLAASGHKSDPEKPKSWPRFVLRVDHEMCTYLTSGK 1010 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALVNTGHKVGSDSQAPSY 590 + + + V I + I A F + ++ + T ++ +P Sbjct: 1011 KTKLGLLSSSLKVWILLKIARGFARGAFELLPYSDEKETDERKEETSESPPKEAGSPKL 1069 >gi|171912987|ref|ZP_02928457.1| cytosolic axial filament protein cafA and ribonuclease E [Verrucomicrobium spinosum DSM 4136] Length = 529 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 132/575 (22%), Positives = 247/575 (42%), Gaps = 72/575 (12%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +++I+ E RV +L + +EE E + G+IY ++ +E L+A F+D G Sbjct: 24 RIVIN-CEKLENRVALLENGVLEEYSVERVGTTHLVGSIYKGRIKNIEQGLKAMFIDIGL 82 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 ++ FL F + IP + A ++E I + S +T D+ E + Sbjct: 83 EKNAFLHFWD------AIPAA-LDAGMEE--INRGGSGKKKKAITAKDIPDLYPVGSEIL 133 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + + + L + Sbjct: 134 VQVTKGPVGNKGPRVTT------------------------------------NISLAGR 157 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 ++ N ++ + L L Sbjct: 158 LLVLMPLNDSCGISRKIDDPKERLRLR---------------------RIIEKLSLPEGM 196 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G+ + + + I RD L+ W ++ E AP +EE ++ +R +RD Sbjct: 197 GVILRTEAS--GKRARHIIRDLSILVEQWKDIAERRDTQKAPVCCFEEPDVFERTVRDFL 254 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +D+ EI+ + + K+ + + R + + P +F + I+ Q+DS +V Sbjct: 255 TEDLDEIVCDDQAVVQRMKELVAPISRRAQRRINYFPGPGSLFEKYHIQRQIDSAFYRQV 314 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 L GY++I+QTEAL+SIDVN+GR+ + ++ L TN+EAA E+ARQLRLR++ GL Sbjct: 315 WLRCGGYIVIDQTEALISIDVNTGRNKGAGNNVDKVILDTNMEAAAEVARQLRLRNMGGL 374 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 +VVDFIDM+ +K+ ++V K + + ++D+A+ Q+ IS FGL+EM+RQR+ S+ ++ + Sbjct: 375 VVVDFIDMKGRKDQQAVYKAMIDHTQRDKAKTQILPISQFGLMEMTRQRLHESLSDAMYE 434 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQ--YTAHNIIVHTHSDVVLYLLNQKRATIV 540 C +CKG G I++ ++++ + R + + + +++V H DV+ L +V Sbjct: 435 ECPHCKGHGQIKTPLTMSVELQRRLSSIMSRLPEHDRDVLVVIHPDVMQRLRTSDDQILV 494 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 E E ++ + + F I + Sbjct: 495 ELERKYQARMTFRTDPNYTREQFLIANAKTGDEIK 529 >gi|149926733|ref|ZP_01914993.1| ribonuclease, Rne/Rng family protein [Limnobacter sp. MED105] gi|149824662|gb|EDM83878.1| ribonuclease, Rne/Rng family protein [Limnobacter sp. MED105] Length = 492 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 128/420 (30%), Positives = 209/420 (49%), Gaps = 1/420 (0%) Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 V+++ + + + + I++++ Q ++VQ+ K+ G KGA +TT +SLAGR Sbjct: 71 VADLWEHRTYNHHQSKQNGNPPPAIEKMVFEGQTIIVQVSKDPLGTKGARLTTQISLAGR 130 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 V +P R N +R+ L+ L G I+RT T E+ D Sbjct: 131 MLVHLPQDPHIGVSQRI-ENEGEREELRAKLTRLLPENTGGFIIRTHAEEATDEELTADV 189 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 YL W + EL AP L+YE+ + +R +RDL D I++ ++ + F Sbjct: 190 NYLRTRWREMLELTRTKPAPSLIYEDLTMAQRVVRDLVSADTQAILIDSKETLKNLLTFA 249 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + ++ ++ P+F IE +L V L S GYVII+QTEAL +IDVN Sbjct: 250 ETYAQETKDRLQLHQGERPLFELYNIEDELQKALGRRVELKSGGYVIIDQTEALTTIDVN 309 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 +G E+T +TNLEAA IARQLRLR+L G+IV+DFIDM +++ ++V +L++ Sbjct: 310 TGGFIGARNFEETVFKTNLEAAHAIARQLRLRNLGGIIVIDFIDMSTEEHKKAVLSELQK 369 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +L +DRAR V S GL+EM+R+R R S+ + C C+G G +++ +VA I+R Sbjct: 370 ALDRDRARTSVTDFSALGLVEMTRKRTRESLAHLLCEPCPSCQGKGQVKTAQTVAYEIMR 429 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + Q+ + V+ L ++ + E G I + + + + I Sbjct: 430 EIVRESRQFNPKEFRILASPAVIDLFLEEEAQHLGMLEEFVGKPITLQVDNLFVQEHYDI 489 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 1 MANK-MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M N+ +L++ + +ETRV +++ V+EL E + I GN+YL KV RV P +Q+AFV Sbjct: 1 MINEQILVNVT-PQETRVAIVQHGAVQELHIERTSTRGIVGNVYLGKVVRVLPGMQSAFV 59 Query: 60 DYGGNRHGFLPFLEI 74 D G R FL ++ Sbjct: 60 DIGLERAAFLHVADL 74 >gi|225447486|ref|XP_002267175.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1019 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 149/657 (22%), Positives = 279/657 (42%), Gaps = 74/657 (11%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL D + EL E ++YL VT++ P + AFV+ G + Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIGSS 403 Query: 65 RHG------------FLPFL------EIHPDYYQI---PFS--------DRQAL-LKESN 94 R F PF + + + P + D +A L+E + Sbjct: 404 RPSLMDIKRSREPFIFPPFHHGTKEKDNGSVFNTLRENPIAHENEHTSYDVEADDLREVD 463 Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 + DD +V D +++ + E ++ + ++++ Sbjct: 464 FQDDPVQFAHDDFEEHEVEDDFDVLIKKDLNGSIVDHGGVEVDFDDYSDGIENHIDSETI 523 Query: 151 ------DVKGGSPEDVPKKFKRQY---------CIQEVIKNRQILLVQIVKEERGNKGAA 195 +++ G + ++ ++VQ+VKE G KG Sbjct: 524 NNFLPVELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPT 583 Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255 +T Y L R+ VL+ ++ +S+KI+ + + P G G+ +RT A Sbjct: 584 LTAYPKLRSRFWVLLTCCNRIG-VSKKISGVERTR--LRVIAKTLQPKGFGLTVRTVAAG 640 Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCK 305 T E+++D E L+ W N+ E A ++ +++ ++D + + Sbjct: 641 HTLEELQKDLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILHRAMGQTLSVVQDYFNE 700 Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365 + ++V + Y E ++++ + P V Y P+F IE +++++ V L Sbjct: 701 KVESMVVDSPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPL 760 Query: 366 PSRGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 P+ G ++I QTEALVSIDVN G E L NL AA++IAR+LRLRD+ G+I Sbjct: 761 PNGGSLVIEQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAAKQIARELRLRDIGGII 820 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 VVDFIDM + N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ Sbjct: 821 VVDFIDMLDDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 880 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLN 533 C+ C G G + + + I + + L I+ + YL + Sbjct: 881 CSCCHGTGRVEALETSFSKIEQEICRLLAMTEEKADPENPNSWPRFILMVDRFMCNYLTS 940 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 KR + + V I + + F ++ + + +++ S + Sbjct: 941 GKRTRLAILSSSLKVWILLKVARGFTRGAFEVKPFTDDKVNISSHQGPISMLRPTEA 997 >gi|212633400|ref|YP_002309925.1| ribonuclease G [Shewanella piezotolerans WP3] gi|212554884|gb|ACJ27338.1| Ribonuclease E and G [Shewanella piezotolerans WP3] Length = 502 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 121/562 (21%), Positives = 212/562 (37%), Gaps = 80/562 (14%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI+ + E RV ++ ++E+ E K+ + GNIY KV+RV P +QAAFVD G Sbjct: 18 ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 76 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 ++ FL +I P + +D + +A+ V G + Sbjct: 77 DKAAFLHASDIVP--HTECVADVEK-------GNFVVRDIAELVRQGQDIMVQVVKDPLG 127 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 A + + S S+V + E++ + K+ Sbjct: 128 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEIRARLKK----------------I 171 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + G + T AG ++ + R++ V + + L Sbjct: 172 TEPFVDDDGGFIIRTAAESAGEDELV-----QDAAFLRRVWAKVSERRKRRGVSLLYQDL 226 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 + V + +I+ D + +A L + G + + D Sbjct: 227 ALPVRIVRDFVGTELDQIQVDSNQTYEELQQFAHEFMPEIANKLEHYNGPIPIFDLYD-- 284 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +E ++ +V Sbjct: 285 -----------------------------------------------VENEVQRALGRKV 297 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY+II+QTEA+ ++D+N+G +E+T TNLEA + IARQLRLR+L G+I Sbjct: 298 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGII 357 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 ++DFIDM+E ++ + V L+ +L DR + + S GL+EM+R+R R S+ Sbjct: 358 IIDFIDMQEAEHQKRVLSSLEAALSVDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 417 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G +++ +V+ I R + Y A +V+ V L + + E E Sbjct: 418 CPSCLGTGSLKTVETVSYEIFREIIRLNRGYDADEFLVYCAPAVYHSLKGDESHLLAELE 477 Query: 544 ARFGVSINVVIGIELADKLFYI 565 + + A F + Sbjct: 478 VYISKRVRLQNEPMYAQNKFDV 499 >gi|149376751|ref|ZP_01894509.1| Ribonucleases G and E [Marinobacter algicola DG893] gi|149358990|gb|EDM47456.1| Ribonucleases G and E [Marinobacter algicola DG893] Length = 1047 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 211/645 (32%), Positives = 336/645 (52%), Gaps = 19/645 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN------VE 150 + A+ D D+ I + ++ A I E S+ +A D + ++ Sbjct: 12 EELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLK 71 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 ++ + P + + + I++V+ Q +++Q+ KEERGNKGAA+TT++SLAGRY VLM Sbjct: 72 EISKEYFKKSPGQIEGKINIKDVVAEGQEVIIQVDKEERGNKGAALTTFISLAGRYLVLM 131 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PN + ISR+I + LKE ++VP MG+I+RTAG RT E++ D +YL++ Sbjct: 132 PNNPRAGGISRRIEGEERAQ-LKEAMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQ 190 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 W+ + + A AP L+++E N+I RA+RD +DI E+++ Y + +F++ +MP Sbjct: 191 FWEAISQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAGTVYEDVLNFVRAVMP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 S+ ++ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+T Sbjct: 251 SFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + H IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM K+ R VE+K++E+L+ D Sbjct: 311 KGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEID 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RARVQVG IS FGLLEMSRQR+R S+ E+ ++VC C+G G IR S+ALSI+R + E Sbjct: 371 RARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + V +LLN+KR + + EAR V + VV + F I + Sbjct: 431 SSKEKTGQVRAVVPVAVATFLLNEKRKQLADIEARQEVEVVVVPAPHMETPHFEILRMRD 490 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----------LLPIPKSESLEDIQDNIV 620 +A V + ++ I + + P+ + + E Sbjct: 491 DEAGVEHVSSYQVAQEYSEREEEIFEAPAAQPPVREQAAVKAIRPVAPAPTPEKAAQETP 550 Query: 621 SEESTGVIRKRRRRRRRRRPATD--HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +E++ G+ RK R+ + + + D + Sbjct: 551 AEQTEGLFRKLGRKIADFFSGEEVIGEPPVKREHTAGSNRDDRRTQDRQDRRKSRVARDD 610 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +G + + + + + + + ++ Sbjct: 611 NRSGNRSGADRRQAGANRGDSSRSDDNRGRNRGANRNRGDGQSQQ 655 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 41/78 (52%), Positives = 57/78 (73%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLP EI +Y++ Sbjct: 62 AERHGFLPLKEISKEYFK 79 >gi|308535182|ref|YP_002137523.2| ribonuclease, Rne/Rng family [Geobacter bemidjiensis Bem] gi|308052527|gb|ACH37727.2| ribonuclease, Rne/Rng family [Geobacter bemidjiensis Bem] Length = 919 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 190/540 (35%), Positives = 294/540 (54%), Gaps = 5/540 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ + D E ++ G++ +E+ A ++ + Sbjct: 12 PEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLKKLGFLQM 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 N + + R+ IQEV++ Q L+VQ+ K ER NKG+A+TTY+S Sbjct: 72 GELHPENW----KWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTTYVS 127 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP S ISRK+ +RK LKEI + +P G G I+RT RT+ E+ Sbjct: 128 LPGRYMVLMPG-SDSAGISRKVEGEGERKKLKEIIAEMAIPEGYGYIIRTEAMGRTREEL 186 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D + L+ + +R L ++Y+E LI R IRD + DI E++V + Y + Sbjct: 187 QKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVYNDV 246 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +D +K + P++ ++V+ +++ PIF R +E Q+D +++ +V L S G + I TEALVS Sbjct: 247 RDCLKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVS 306 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+ST E +EDTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N VEK Sbjct: 307 IDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNSEVEK 366 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK +LK D+ARV V IS FGLLEMSRQRIR ++ +++T C +C G G ++S ++AL Sbjct: 367 TLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAMAL 426 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S LR V + T ++ +V YLLN+KR + + E+ + + + V Sbjct: 427 SFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTVKGKPSYLLN 486 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +E +A + + +A ++ + + ++ E V Sbjct: 487 QMDLELIKREKAADELPLEKPAHGRALPKEEAAQEPAAEGRKKKKKGKKAQEPEAAAHVE 546 >gi|261209928|ref|ZP_05924228.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio sp. RC341] gi|260840993|gb|EEX67525.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio sp. RC341] Length = 489 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 124/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + ES Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ K+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + Y G I R + K L + A L+ Sbjct: 157 ---------------------VVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + R+ +R+ + + + + + + Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E E + L + + +E +++ Sbjct: 230 KILVDSRQEYENLKEFTSEYVPELTAKLDLYHGDKPIFDMYDTENEIQRSLERKVE---- 285 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM ++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ SV ILR + Y A +V+ V L ++ + Sbjct: 402 CSTCPTCEGRGSVKTVESVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|296160579|ref|ZP_06843394.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1] gi|295889105|gb|EFG68908.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1] Length = 489 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 197/406 (48%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQHQAPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + L G I+RT T E+ D YL + W + Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAGDVAYLRKTWATILSQG 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ NL +R +RD + S I V + Y+ DF P+ + + Y Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIESEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L ++ + G +++ + L+ + + I Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|269961311|ref|ZP_06175677.1| cytoplasmic axial filament protein [Vibrio harveyi 1DA3] gi|269833977|gb|EEZ88070.1| cytoplasmic axial filament protein [Vibrio harveyi 1DA3] Length = 489 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 120/565 (21%), Positives = 211/565 (37%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E ++ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGVLQEVHIERESRRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + E+ Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAENEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ K+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESETERERLKKV------------- 157 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + G + T A K + + + +E Sbjct: 158 ---VNHYCDEHGGFIIRTAAEGADE----------------KELSQDAAFLKRLWLKVME 198 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + G I R + + + Sbjct: 199 RRSKYKTRSTLYGELGLAQRILR-----------------------------DFVGTELD 229 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E E + + L + +E +++ Sbjct: 230 KIMVDSRLEYENLKEFTSEYVPELTEKLELYEGDKPIFDMYDTENEIQRSLERKVE---- 285 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY+II+QTEA+ ++D+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 286 ----LKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM ++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMASDEHRKRVLSSLEAALSKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A N +V+ V LL + + Sbjct: 402 CSSCPTCEGRGSVKTVETVCYEILREITRVNRAYDADNFVVYASPYVAETLLGDESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|262375075|ref|ZP_06068309.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145] gi|262310088|gb|EEY91217.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145] Length = 1159 Score = 284 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 202/566 (35%), Positives = 309/566 (54%), Gaps = 9/566 (1%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYYKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKE+ L VP GM VI+RTAG R++ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEMLATLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQSTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 LDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +EDTAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA Sbjct: 310 QDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP-- 570 + + V ++ +LLN+KR T+V E V + V+ L + I + Sbjct: 430 RERHGEVQVEVPVEIAAFLLNEKRHTLVYLEQTSNVRVTVLPHPHLETPHYEITYNAEGF 489 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 S + Y+ + + +++ + + + + Sbjct: 490 APTSYERTEATRSSEKELGYESSEWHLEEEQHTHAAAPAPAQQQNNGRNNKRRNQQNQNA 549 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQN------VIDDSFDMYMEPSDITNHNLLENGAH 684 ++ ++ PA A S + ++N + ++ GA Sbjct: 550 QQVPVAQQAPAQAQVAAPASSPCAWLENLFVQKQAATVDQSRTANNAAAAIEQMINGGAV 609 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSD 710 + +S P + S ++ Sbjct: 610 SRGQFGQLSAPVAQPAPQQVSQPAAP 635 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 51/78 (65%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ R+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEIRVALVTGQRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI YY+ Sbjct: 62 AGRQGFLSMREIANSYYK 79 >gi|15640446|ref|NP_230073.1| ribonuclease G [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727237|ref|ZP_01680396.1| cytoplasmic axial filament protein [Vibrio cholerae V52] gi|147674328|ref|YP_001218688.1| ribonuclease G [Vibrio cholerae O395] gi|153217100|ref|ZP_01950864.1| cytoplasmic axial filament protein [Vibrio cholerae 1587] gi|153818264|ref|ZP_01970931.1| cytoplasmic axial filament protein [Vibrio cholerae NCTC 8457] gi|153822588|ref|ZP_01975255.1| cytoplasmic axial filament protein [Vibrio cholerae B33] gi|153825647|ref|ZP_01978314.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-2] gi|227080630|ref|YP_002809181.1| cytoplasmic axial filament protein [Vibrio cholerae M66-2] gi|229507059|ref|ZP_04396565.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae BX 330286] gi|229508786|ref|ZP_04398278.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae B33] gi|229512650|ref|ZP_04402119.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae TMA 21] gi|229519774|ref|ZP_04409217.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae RC9] gi|229525113|ref|ZP_04414518.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae bv. albensis VL426] gi|229606300|ref|YP_002876948.1| ribonuclease G [Vibrio cholerae MJ-1236] gi|254850651|ref|ZP_05240001.1| ribonuclease G [Vibrio cholerae MO10] gi|255743804|ref|ZP_05417761.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholera CIRS 101] gi|262153583|ref|ZP_06028711.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae INDRE 91/1] gi|262167617|ref|ZP_06035321.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae RC27] gi|298501048|ref|ZP_07010849.1| cytoplasmic axial filament protein [Vibrio cholerae MAK 757] gi|9654841|gb|AAF93592.1| cytoplasmic axial filament protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630356|gb|EAX62751.1| cytoplasmic axial filament protein [Vibrio cholerae V52] gi|124113880|gb|EAY32700.1| cytoplasmic axial filament protein [Vibrio cholerae 1587] gi|126511223|gb|EAZ73817.1| cytoplasmic axial filament protein [Vibrio cholerae NCTC 8457] gi|126519892|gb|EAZ77115.1| cytoplasmic axial filament protein [Vibrio cholerae B33] gi|146316211|gb|ABQ20750.1| cytoplasmic axial filament protein [Vibrio cholerae O395] gi|149740677|gb|EDM54784.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-2] gi|227008518|gb|ACP04730.1| cytoplasmic axial filament protein [Vibrio cholerae M66-2] gi|227012273|gb|ACP08483.1| cytoplasmic axial filament protein [Vibrio cholerae O395] gi|229338694|gb|EEO03711.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae bv. albensis VL426] gi|229344463|gb|EEO09438.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae RC9] gi|229350327|gb|EEO15278.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae TMA 21] gi|229354189|gb|EEO19120.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae B33] gi|229355804|gb|EEO20724.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae BX 330286] gi|229368955|gb|ACQ59378.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae MJ-1236] gi|254846356|gb|EET24770.1| ribonuclease G [Vibrio cholerae MO10] gi|255738553|gb|EET93941.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholera CIRS 101] gi|262023953|gb|EEY42650.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae RC27] gi|262030610|gb|EEY49246.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae INDRE 91/1] gi|297540296|gb|EFH76356.1| cytoplasmic axial filament protein [Vibrio cholerae MAK 757] Length = 489 Score = 284 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + ES Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ K+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + Y G I R + K L + A L+ Sbjct: 157 ---------------------IVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + R+ +R+ + + + + + + Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E E + L + + +E +++ Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM ++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ V L ++ + Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|229520012|ref|ZP_04409441.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae TM 11079-80] gi|229530263|ref|ZP_04419651.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae 12129(1)] gi|229332036|gb|EEN97524.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae 12129(1)] gi|229342961|gb|EEO07950.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae TM 11079-80] Length = 489 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + ES Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ K+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + Y G I R + K L + A L+ Sbjct: 157 ---------------------IVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + R+ +R+ + + + + + + Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E E + L + + +E +++ Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM ++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLEAALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ V L ++ + Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|295698594|ref|YP_003603249.1| ribonuclease E [Candidatus Riesia pediculicola USDA] gi|291157203|gb|ADD79648.1| ribonuclease E [Candidatus Riesia pediculicola USDA] Length = 606 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 173/422 (40%), Positives = 257/422 (60%), Gaps = 3/422 (0%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 K + I+E++K Q +++QI KEERG+KGA++TT++SLAG Y VLMPN Sbjct: 74 SKEYFSNQFKANSKPNIKEILKEGQEIIIQINKEERGHKGASLTTFISLAGCYLVLMPNN 133 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 K ISR+I + +KEI L VP GMG+I+RTAG ++ +++D +Y + W+ Sbjct: 134 PKAGGISRRIEGEDRAE-IKEILPFLNVPNGMGLIIRTAGLGKSVKVLQQDLQYRLNHWE 192 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SY 332 +++ +L+ AP L+++E N+I R+IRD + DI EII+ K+ ++ + + Sbjct: 193 AIKKASLSKNAPFLIHQESNIIIRSIRDYFQPDIQEIIIDEFDTIEMVKNHIESIGRKDF 252 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y PIF IE Q++S Q +V LPS G ++I+ TEAL +ID+NS RSTR Sbjct: 253 LNKIKHYSGKIPIFSHYQIESQIESAFQRKVRLPSGGSIVIDTTEALTAIDINSARSTRC 312 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TA TNLEA EEI RQLRLRDL GLIV+DFIDM + + R +E K++E++++DRA Sbjct: 313 TDIEETAFNTNLEAVEEITRQLRLRDLGGLIVIDFIDMSIQSHQREIENKIREAVRQDRA 372 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 +VQ IS FGLLEMSRQR+ SS+ ES VC C G+G IR S++LSILR +EE + Sbjct: 373 KVQCSRISRFGLLEMSRQRLTSSLCESNYYVCPRCDGSGTIRDDESLSLSILRIIEEEVF 432 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-ARFGVSINVVIGIELADKLFYIEKGSPV 571 + + + + Y+LN+KR I + E + + I +V + F I + Sbjct: 433 KDNTYEVHAIVPIQIASYILNKKRNFINDIERKKSNIKIIIVPNNRIQSPQFNIIRIRKG 492 Query: 572 QA 573 + Sbjct: 493 EK 494 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 2/107 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A EE RV ++ R+ +L+ E+ +++ K NIY KV R+EPSL AAFV+YG Sbjct: 2 KRMLINAVQKEELRVAIVEGQRLYDLNIETIRREKKKSNIYKGKVIRIEPSLGAAFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY--QIPFSDRQALLKESNIAQTDSEAVADDV 107 +HGFLP EI +Y+ Q + + + + Q + + Sbjct: 62 SMKHGFLPIKEISKEYFSNQFKANSKPNIKEILKEGQEIIIQINKEE 108 >gi|253698796|ref|YP_003019985.1| ribonuclease, Rne/Rng family [Geobacter sp. M21] gi|251773646|gb|ACT16227.1| ribonuclease, Rne/Rng family [Geobacter sp. M21] Length = 496 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 144/565 (25%), Positives = 247/565 (43%), Gaps = 72/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N+++I+ + ETR+ ++ + + EL E K I GNIY +V RV P +QAAFVD Sbjct: 1 MGNELVINTT-SHETRIALIENGTIAELYVERSRVKGIIGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ +A+ + ++ + + Sbjct: 60 IGLEKAAFLYVADV-------------------------FDAMDEYDSYIEGEQGEEPMP 94 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + PI QE +E + + + + G+ ++ + + + Sbjct: 95 HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 148 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + + + G G I R +++ ++L L Sbjct: 149 SRRIEDEAERERLKEIVDRIKPVG-----------GGFIVRTVSDGKSEEDLVADLHYLT 197 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I + + I D + + +R Sbjct: 198 KLWDE--IAKKKDNAGAPTLIHSDLDVTQK---------------------------VVR 228 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + + I+V + + + F+ MP + Y++ PIF G+EV++ Sbjct: 229 DILTESVERIVVDSKPEHDKIVQFITTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 288 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR+L Sbjct: 289 RKVWLKSGGYIIIEQTEALTAIDVNTGRYVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 348 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+E+LK D+++ + IS GL+EM+R+R+R S+ Sbjct: 349 GIIIIDFIDMEKEVNREKVYGALEEALKSDKSKTNILKISELGLVEMTRKRVRESLGRMM 408 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+ SV I R + +L +++ H V L +++R + Sbjct: 409 CEPCPYCEGRGYVKSKISVCHEIFRELRREMLDIRGTKVMLTVHPQVADLLYDEERRGLE 468 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E F I V + F + Sbjct: 469 ELEKNFKKRITVRAKPGFHQEQFEV 493 >gi|91782561|ref|YP_557767.1| ribonuclease G [Burkholderia xenovorans LB400] gi|91686515|gb|ABE29715.1| RNAse G [Burkholderia xenovorans LB400] Length = 489 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 197/406 (48%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQHQAPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + L G I+RT T E+ D YL + W + Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAGDVAYLRKTWATILSQG 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ NL +R +RD + S I V + Y+ DF P+ + + Y Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L ++ + G +++ + L+ + + I Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|187923291|ref|YP_001894933.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN] gi|187714485|gb|ACD15709.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN] Length = 489 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 197/406 (48%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQHQTPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + L G I+RT T E+ D YL + W + Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAGDVAYLRKTWATILSQG 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ NL +R +RD + S I V + Y+ DF P+ + + Y Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDESSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L ++ + G +++ + L+ + + I Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|186476825|ref|YP_001858295.1| ribonuclease [Burkholderia phymatum STM815] gi|184193284|gb|ACC71249.1| ribonuclease, Rne/Rng family [Burkholderia phymatum STM815] Length = 489 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 200/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P++ I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQQQVPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + L V G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTSVLPVDEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ NL +R +RD + + I V + ++ +F P+ + + Y Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETTRIQVDSRETFQMLTEFAAEFTPAVSSKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENSEHRDQVLGELKKALARDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTARTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L ++ + G +++ + L+ + + I Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|30678104|ref|NP_850988.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana] gi|330250722|gb|AEC05816.1| RNAse E/G-like protein [Arabidopsis thaliana] Length = 871 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 206 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 265 Query: 65 RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112 RH F+ +I + + PF D L A + E + D + Sbjct: 266 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 322 Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145 + + E +E I Sbjct: 323 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 382 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ + K IQ ++ ++VQ+VKE G KG +T Y L R Sbjct: 383 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 440 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+ + +S+KI+ + ++ P G G+ +RT A + E+++D Sbjct: 441 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 497 Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + L+ W N+ + A ++ P L++ ++D + + +++V Sbjct: 498 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 557 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y E +++ + P V ++ P+F IE +++ + V L + G ++I Q Sbjct: 558 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 617 Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALVSIDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ Sbjct: 618 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 677 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + Sbjct: 678 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 737 Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543 + + I + + L + I+ S + +L KR + Sbjct: 738 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 797 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + V I + + F ++ + + H+V + + L Sbjct: 798 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 857 Query: 604 LPIPKSES 611 +PI K ++ Sbjct: 858 IPIKKEKT 865 >gi|254226003|ref|ZP_04919603.1| cytoplasmic axial filament protein [Vibrio cholerae V51] gi|125621459|gb|EAZ49793.1| cytoplasmic axial filament protein [Vibrio cholerae V51] Length = 489 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 215/565 (38%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + ES Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ K+ Sbjct: 111 PLGTKGARXTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + Y G I R + K L + A L+ Sbjct: 157 ---------------------IVSHYCD-----EHGGFIIRTAAEGANEKELTQDAAFLK 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + R+ +R+ + + + + + + Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E E + L + + +E +++ Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM ++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ V L ++ + Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|160872700|ref|ZP_02062832.1| ribonuclease E (RNase E) [Rickettsiella grylli] gi|159121499|gb|EDP46837.1| ribonuclease E (RNase E) [Rickettsiella grylli] Length = 778 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 191/620 (30%), Positives = 308/620 (49%), Gaps = 21/620 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R ALL+ + ++ D E + ++ +E+ A S E Sbjct: 15 PGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYGAE------- 67 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 K +P + K I+ +K Q L+VQI KEERG+KGAA+TTY++ Sbjct: 68 ----RHGFLPFKEIAPSYLKGKNYDLQSIKHSLKVGQELMVQIEKEERGDKGAALTTYIT 123 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKN---LKEIARGLEVPAGMGVILRTAGASRTK 258 L G Y VLMPN ISR+I R+ + ++ E+ MG+ILRTAG R Sbjct: 124 LPGSYLVLMPNNPGAGGISRRIEGDERREMQDLMHDLIEQTELSKNMGLILRTAGVGREF 183 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 E+K D L++ W+ +++ AP L+++EG+LI R++RD +DI EIIV +K + Sbjct: 184 SELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVDDKKIH 243 Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378 + K +++ + P + + Y++ P+F IE ++S + ++ LPS ++I++TEA Sbjct: 244 EKIKQYIEQIRPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVIDRTEA 303 Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 LVSID+NSGRST+ IE+TA+ TNLEAA+EIA QLR+RDL GLIV+DFIDM ++N R Sbjct: 304 LVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSEENQRK 363 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 VE + ++KKDRAR+Q+G IS FGLLEMSRQR+R S+ ++ +C+ C G G +R+ S Sbjct: 364 VENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTVRTIES 423 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 AL +LRS+E+ L+ + +I V D+ YL N+KR + E ++ V++ ++ Sbjct: 424 FALFLLRSIEKETLKKSTQHIRVELPVDIATYLFNEKRLALQHIEHQYNVNLLLIPNPYW 483 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES------- 611 + I S L + ++ ++ IP + Sbjct: 484 QSPQYKITSFSKTNNLKTNDAASYQMLDKSHLESSLLHHSPSAKVVEIPAVKPLTFINNK 543 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + K + +++P+ + + + S + Sbjct: 544 NKTVGLLGRLLGMLKDFGKIKTDLNKKQPSKNKITTPYSHEAHKYTSGRRYSKTRHNHNR 603 Query: 672 DITNHNLLENGAHGFTENYD 691 + E + N Sbjct: 604 VRHRRDEKEKLNNDSGGNEQ 623 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 62/105 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N++LI+A+ E RV +L N++ +LD E ++Q K NIY K++R+E SL+AAF+ YG Sbjct: 6 NRILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYG 65 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLPF EI P Y + D Q++ + Q + + Sbjct: 66 AERHGFLPFKEIAPSYLKGKNYDLQSIKHSLKVGQELMVQIEKEE 110 >gi|220928744|ref|YP_002505653.1| ribonuclease, Rne/Rng family [Clostridium cellulolyticum H10] gi|219999072|gb|ACL75673.1| ribonuclease, Rne/Rng family [Clostridium cellulolyticum H10] Length = 494 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 133/571 (23%), Positives = 238/571 (41%), Gaps = 77/571 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N++++D S E RV +L D + E+ E + + + GNIY KV+ V P +QAAF+D Sbjct: 1 MVNEIIVDVS-PGEIRVGILEDKELAEIHIERTNHQGLVGNIYRGKVSSVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + P D V + +++ Sbjct: 60 IGYEKNAFLYVGDAVP----------------KKEYSDDESEVNCNYEEYNISDILKVGQ 103 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + T+ + + + + + + Sbjct: 104 EITVQVIKEPIGTKGPRVST--------------------HITLPGRNLVLLPNADYIGI 143 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I + K L L P I R ++ + + E L Sbjct: 144 SRRIENDAERQK---------LKKIAEKLKPQ--NMGLIVRTVSEGKEESDFVEDVSFLI 192 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I + I RD LI R++R Sbjct: 193 KLWAK--IKESENNGPVPRCIHRDIN---------------------------LIYRSVR 223 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ D+++ I++ EK Y + + ++++ P V ++ + IF IE +++ Sbjct: 224 DLFTWDVNKFIINSEKEYSKVLELVEMISPLLKSRVELFQKDYKIFDYYQIESKIERALS 283 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L GY+II++TEAL IDVN+G+ E +E+T L+TN+EA EIA+QLRLRD+ Sbjct: 284 RKVWLKCGGYIIIDKTEALTVIDVNTGKFVGESNLEETVLKTNIEATREIAKQLRLRDIG 343 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G++++DFIDM ++ + V LK+SLK DR + V ++ GL+EM+R++IR + Sbjct: 344 GIVIIDFIDMNNAEHQQLVLDSLKQSLKDDRTKTIVLGMTELGLVEMTRKKIRQELSTVI 403 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C GAG + + + A++ILR V E++ ++ I + H V + ++ + Sbjct: 404 SCDCPICDGAGRVYTAETNAMNILREVREHMNSTSSKKIRLEVHPTVAHAVEENIQSLLE 463 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPV 571 ++ + I V ++ + I+ Sbjct: 464 DFTEKKDKKIKVTAVNDIRPAGYRIKDIDTD 494 >gi|297580557|ref|ZP_06942483.1| cytoplasmic axial filament protein [Vibrio cholerae RC385] gi|297534973|gb|EFH73808.1| cytoplasmic axial filament protein [Vibrio cholerae RC385] Length = 489 Score = 283 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 214/565 (37%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + ES Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAESEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ K+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK-------------- 156 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 V G I R + K L + A L+ Sbjct: 157 --------------------------IVAHYCDEHGGFIIRTAAEGANEKELTQDAAFLK 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + R+ +R+ + + + + + + Sbjct: 191 RLWSKVIERRSKYKNRSMLYGELGLAQRILR---------------------DFVGTELT 229 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E E + L + + +E +++ Sbjct: 230 KILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVE---- 285 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM ++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMVSDEHRKRVLISLEAALVKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ V L ++ + Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|170691725|ref|ZP_02882889.1| ribonuclease, Rne/Rng family [Burkholderia graminis C4D1M] gi|170143009|gb|EDT11173.1| ribonuclease, Rne/Rng family [Burkholderia graminis C4D1M] Length = 489 Score = 283 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 196/406 (48%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQHQTPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + L G I+RT T E+ D YL + W + Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQG 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ NL +R +RD + S I V + Y+ DF P+ + + Y Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSSKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ V +LK +L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLSELKRALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L ++ + G +++ + L+ + + I Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|288928444|ref|ZP_06422291.1| ribonuclease G [Prevotella sp. oral taxon 317 str. F0108] gi|288331278|gb|EFC69862.1| ribonuclease G [Prevotella sp. oral taxon 317 str. F0108] Length = 524 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 149/566 (26%), Positives = 251/566 (44%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D ++ E E GN+Y+AKV ++ P L A FVD Sbjct: 1 MTSEVVIDV-QQKEISIALLEDKKLVEYQSEPREVSFSVGNVYMAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 GF D H S Sbjct: 60 V-----GF----------------------------------ERDAFLHYLDLGSQFDSY 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + ++ ++ + + +Q + + Q + Sbjct: 81 AKYLKQVQSDRKKLYPFAKASRLPDLK------------------KDGSVQTTLTSGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +T LS AGRY +L+P K S+ + + LK++ ++ Sbjct: 123 LVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVSVSSKIKSGEERAR-LKQLIHSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAI 299 GVI+RT + E+ + + L + W+ E P LV+EE + + Sbjct: 182 PK-NCGVIVRTVAEGKRVAELDAELKTLTKYWEEAIEKVQKTQKRPQLVFEETSRAVALL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E ++E K ++ ++ P IV+ Y PIF I Q+ S Sbjct: 241 RDLFNPTYENIYVNDEDVFKEVKHYVSMIAPDKVDIVKLYSGKVPIFDNFNITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRD 418 V Y+II TEAL +DVNSG TR E E AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKAVNYKHGAYLIIEHTEALHVVDVNSGNRTRSEKGQEANALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 S + C C G G I+S + ++ + + +H H V ++ + Sbjct: 421 SVDETCPTCFGKGKIKSSILFTDQLEGKIDRLVNKIGVKKFYLHVHPYVAAFINQGFISL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 +++ ++G +++V +LA + Sbjct: 481 KRQWQLKYGFGLHIVSSQKLAFLQYE 506 >gi|254490565|ref|ZP_05103751.1| ribonuclease, Rne/Rng family [Methylophaga thiooxidans DMS010] gi|224464309|gb|EEF80572.1| ribonuclease, Rne/Rng family [Methylophaga thiooxydans DMS010] Length = 490 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 128/565 (22%), Positives = 219/565 (38%), Gaps = 78/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M++++LI+ + ETR V+ + ++E+ E + + GNIY KV RV P +QAAFV+ Sbjct: 1 MSSEILINVT-PSETRAAVVDNGVLQEVFIERNEYRGLVGNIYKGKVCRVLPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +I IP L + N+ T S + + Sbjct: 60 IGLARAAFLHVSDIS-----IPKGQTGDLKEAPNVEPTISSLLREGQEIL---------- 104 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 V G+ +Y + + Sbjct: 105 -----------------------VQVIKDPMGTKGARLTTQLSVSSRYLVYMPETEGIGV 141 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 ++I EE ++ + L AG ++ ++G T + + L + Sbjct: 142 SLKIETEEERDRLKSALVSLLEAGTGGYILRTAAEGVTEAELEADLKFLYRLWAKLQERN 201 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G + D MR ++ + IR Sbjct: 202 QVVKCG------------EPLHEDLPLAMRALRDLFSADIER----------------IR 233 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + + E E ++ + I+ L+ Sbjct: 234 IDAEDTFEKAVHFAEGFMPECAARLEHYTGDLPLFDLFGVEDE-------IQKALER--- 283 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+I +QTEA+ +ID+N+G +E+T +TNLEAA IARQLR+R+L Sbjct: 284 -KVPLKSGGYLIFDQTEAMTTIDINTGGFVGHKNLEETIFKTNLEAAHAIARQLRVRNLG 342 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDMEE + V + L++++ DRAR + A+S GL+EM+R+R R S+ Sbjct: 343 GIIIIDFIDMEEIGHREQVLRALEKAMVFDRARHNISAVSELGLVEMTRKRTRESLGHIL 402 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C+G GY ++ +V I R + QY ++ D++ L ++ + Sbjct: 403 CEPCPCCEGKGYTKNVETVCYEIFREIMREAKQYETKQFLILASQDIIDRLNDEDSTKVA 462 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G I ++ + F + Sbjct: 463 ELEQMIGKPILFQCEMQYGREQFNV 487 >gi|319760541|ref|YP_004124479.1| ribonuclease E [Candidatus Blochmannia vafer str. BVAF] gi|318039255|gb|ADV33805.1| ribonuclease E [Candidatus Blochmannia vafer str. BVAF] Length = 716 Score = 283 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 174/421 (41%), Positives = 253/421 (60%), Gaps = 3/421 (0%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + + I+++++ Q L+VQI KEERGNKGAA+TT++SLAG Y VLMPN K ISR+I Sbjct: 85 QNKSNIKDILREGQELIVQINKEERGNKGAALTTFISLAGSYLVLMPNNPKSGGISRRIE 144 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + LK L +P GM +I+RTAG ++ E++ D ++ W N++ A +A Sbjct: 145 GNDRIE-LKTTLATLALPEGMSLIIRTAGVGKSVAELEWDLTSRLQHWKNIKNTASIRLA 203 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPH 343 P L++++ N+I RA RD DI EI++ AK+ + L P + + ++ Y Sbjct: 204 PFLIHQDSNVIVRAFRDYLRPDIGEILIDNPDILNVAKEHITSLGRPDFVKKIKLYNGEI 263 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST+ IEDTA TN Sbjct: 264 PLFSHYQIESQIESAFQHEVRLPSGGSIVIDATEALTAIDINSARSTKGLDIEDTAFNTN 323 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEA +EIARQLRLRD+ GL+V+DFIDM + R +E L+ +++DRAR+QVG IS FG Sbjct: 324 LEATDEIARQLRLRDIGGLVVIDFIDMTSNSHQREIENTLRTVVRQDRARIQVGRISKFG 383 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 LLE+SRQR+R S+ ES+ VC C G G IR +S++LSILR +EE L+ + Sbjct: 384 LLELSRQRLRPSLDESSHHVCPRCSGTGSIRDNASLSLSILRLIEEEALKDNTCEVHAIV 443 Query: 524 HSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 + YLLN+KR I + E R GV +V ++ + + + + N Sbjct: 444 PVAIASYLLNEKRKAISDIEQRQKGVRAIIVPHEQMKTPNYEVRRIRKGETNNNQPSYAL 503 Query: 583 S 583 + Sbjct: 504 A 504 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 50/77 (64%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E Q K NIY K+ R+EPSL+A FVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIEIIGHAQKKSNIYKGKIIRIEPSLEAVFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPIKEIAREYF 78 >gi|154490933|ref|ZP_02030874.1| hypothetical protein PARMER_00850 [Parabacteroides merdae ATCC 43184] gi|154088681|gb|EDN87725.1| hypothetical protein PARMER_00850 [Parabacteroides merdae ATCC 43184] Length = 526 Score = 283 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 134/583 (22%), Positives = 242/583 (41%), Gaps = 58/583 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + VL D + EL E+ + G+IYL KV ++ P L AAF+D Sbjct: 1 MISELVVDV-QPKEVSIAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P++ +QAL ++ GD IP + Sbjct: 60 VGYKKDAFLHYLDLGPNFNTQQKFLKQALGEQK----------------GDKKIPTISKM 103 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + I + + ++ G F +Y + ++ + Sbjct: 104 QLLPEIEKDGSISNVLKVGQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSV 163 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + + + I R + L + L Sbjct: 164 STKIKSSEERARLRQLIQSIKPKNFSV-----------IVRTSSEGKRVAELDHELKTL- 211 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 ++ W+ AP L+YEE +R Sbjct: 212 ----------------------------LKRWEENIPKITKVKAPALIYEETARAVALLR 243 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ I V+ Y +D++ L+ P IV++Y PIF I Q+ SL Sbjct: 244 DIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFDNFAITKQIKSLFG 303 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419 VT S Y+II TEA+ IDVNSG ++ ++ TA+ N AA+EIARQLRLRD+ Sbjct: 304 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNTAAADEIARQLRLRDM 363 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM E N + + + + +++ DRA+ + +S FGL++++RQR+R ++ Sbjct: 364 GGIIVVDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDVD 423 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T++ C C G G I+ S+ ++ + ++ +H H V ++ + K Sbjct: 424 TSEACPTCFGTGTIKPSILFTDSLEGKIDCLVNKHNVKKFALHVHPYVAAFIKSGKFPLS 483 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 +++ ++ + I V+ L + + + ++ Sbjct: 484 WKWKLKYSMGIKVIPNQSLGFLEYKFIDSDKNELDMMEEKEIK 526 >gi|157963562|ref|YP_001503596.1| ribonuclease G [Shewanella pealeana ATCC 700345] gi|157848562|gb|ABV89061.1| ribonuclease, Rne/Rng family [Shewanella pealeana ATCC 700345] Length = 502 Score = 283 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 122/562 (21%), Positives = 212/562 (37%), Gaps = 80/562 (14%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI+ + E RV ++ ++E+ E K+ + GNIY KV+RV P +QAAFVD G Sbjct: 18 ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 76 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 ++ FL +I P + +D + +A+ V G + Sbjct: 77 DKAAFLHASDIVP--HTECVADVEK-------GNFVVRDIAELVRQGQDIMVQVVKDPLG 127 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 A + + S S+V + E+V + K+ Sbjct: 128 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEVRARLKK----------------I 171 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + G + T AG ++ + R++ V + + L Sbjct: 172 TQPFVDDDGGFIIRTAAESAGEDELV-----QDAGFLRRVWAKVSERRKRRGVSLLYQDL 226 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 + V + +I+ D + + +A L + G + + D Sbjct: 227 ALPVRIVRDFVGTELDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYD-- 284 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +E ++ +V Sbjct: 285 -----------------------------------------------VENEVQRALGRKV 297 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY+II+QTEA+ ++D+N+G + +T TNLEA IARQLRLR+L G+I Sbjct: 298 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGII 357 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 ++DFIDM ++ + V L+ +L KDR + + S GL+EM+R+R R S+ Sbjct: 358 IIDFIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 417 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G +++ +V+ I R + Y A +V+ +V L + + E E Sbjct: 418 CPACLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELE 477 Query: 544 ARFGVSINVVIGIELADKLFYI 565 G + + A F + Sbjct: 478 VYIGKRVRLQSEPMYAQNKFDV 499 >gi|187735048|ref|YP_001877160.1| ribonuclease, Rne/Rng family [Akkermansia muciniphila ATCC BAA-835] gi|187425100|gb|ACD04379.1| ribonuclease, Rne/Rng family [Akkermansia muciniphila ATCC BAA-835] Length = 515 Score = 283 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 143/572 (25%), Positives = 240/572 (41%), Gaps = 70/572 (12%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I+A E RV +L + +EE E E + I G I+ +V +EP L+A FVD G Sbjct: 6 IIINA-EKLERRVALLENGVLEEYTIEREGEDNIVGGIFKGRVKNIEPGLKAMFVDIGQE 64 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 ++ FL F + +P + +L + + + +T D+ E + Sbjct: 65 KNAFLHFWD------ALPAALDSSLEEIEREGR--PKKQQRKITSKDIPDIYPIGSEIMV 116 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 + T+ + + NV E K R L + Sbjct: 117 QVTKGPIGTKGPRVTT-------NVSLAGRYLVLMPFTDQFGISRKIEDPKERLRLRQIM 169 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 K + I R + ++ L Sbjct: 170 QKLNVPDGM-----------------------GIIMRTVAQGQRYRHFVRDLAMLLEQW- 205 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304 +V E + AP VY+E +LI+R RD Sbjct: 206 ----------------------------YSVEEKKEANPAPVCVYKEPDLIERTARDFLT 237 Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVT 364 + II + + + R ++ + PIF GIE Q++ Q +V Sbjct: 238 DTVDNIICDNAETTEHMRAIAGKISRRAKRHIQHFPVRTPIFEELGIEKQINEAFQRQVL 297 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV 424 LP GY++I++TEAL++IDVN+GR+ ++ T L TNLEAA EIARQLRLR++ GL+V Sbjct: 298 LPCGGYLVIDETEALIAIDVNTGRNKGTKDLDKTILDTNLEAAYEIARQLRLRNIGGLVV 357 Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 VDFIDM +K+ ++V K +K+ LK+D+A+ QV I+ GL+EM+RQR+ S+ ES C Sbjct: 358 VDFIDMRHRKDQQAVYKAMKDRLKRDKAKTQVLQITPIGLMEMTRQRLNESLRESVHDPC 417 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYT--AHNIIVHTHSDVVLYLLNQKRATIVEY 542 YC G G ++S ++++ I R + + +Y ++++ +S+V+ N+ + ++E Sbjct: 418 PYCGGRGRVKSVMTMSVEIQRQIYACIQKYRDTIGDMVIVVNSEVLSRFKNEDASLLMEL 477 Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 E + + + F I Sbjct: 478 ERQHSGRLIFRGDHNQHRESFAIYDARYDNKP 509 >gi|27368501|emb|CAD48421.1| putative endoribonuclease E [Arabidopsis thaliana] Length = 818 Score = 283 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 153 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 212 Query: 65 RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112 RH F+ +I + + PF D L A + E + D + Sbjct: 213 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 269 Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145 + + E +E I Sbjct: 270 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 329 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ + K IQ ++ ++VQ+VKE G KG +T Y L R Sbjct: 330 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 387 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+ + +S+KI+ + ++ P G G+ +RT A + E+++D Sbjct: 388 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 444 Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + L+ W N+ + A ++ P L++ ++D + + +++V Sbjct: 445 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 504 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y E +++ + P V ++ P+F IE +++ + V L + G ++I Q Sbjct: 505 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 564 Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALVSIDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ Sbjct: 565 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 624 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + Sbjct: 625 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 684 Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543 + + I + + L + I+ S + +L KR + Sbjct: 685 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 744 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + V I + + F ++ + + H+V + + L Sbjct: 745 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 804 Query: 604 LPIPKSES 611 +PI K ++ Sbjct: 805 IPIKKEKT 812 >gi|22325461|ref|NP_178508.2| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana] gi|20260628|gb|AAM13212.1| putative ribonuclease E [Arabidopsis thaliana] gi|31711752|gb|AAP68232.1| At2g04270 [Arabidopsis thaliana] gi|330250720|gb|AEC05814.1| RNAse E/G-like protein [Arabidopsis thaliana] Length = 713 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 149/668 (22%), Positives = 278/668 (41%), Gaps = 69/668 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 48 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 107 Query: 65 RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112 RH F+ +I + + PF D L A + E + D + Sbjct: 108 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 164 Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145 + + E +E I Sbjct: 165 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 224 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ + K IQ ++ ++VQ+VKE G KG +T Y L R Sbjct: 225 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 282 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+ + +S+KI+ + ++ P G G+ +RT A + E+++D Sbjct: 283 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 339 Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + L+ W N+ + A ++ P L++ ++D + + +++V Sbjct: 340 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 399 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y E +++ + P V ++ P+F IE +++ + V L + G ++I Q Sbjct: 400 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 459 Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALVSIDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ Sbjct: 460 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 519 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + Sbjct: 520 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 579 Query: 494 RSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYE 543 + + I + + L + I+ S + +L KR + Sbjct: 580 EALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILS 639 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + V I + + F ++ + + H+V + + L Sbjct: 640 SSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTL 699 Query: 604 LPIPKSES 611 +PI K ++ Sbjct: 700 IPIKKEKT 707 >gi|262370011|ref|ZP_06063338.1| ribonuclease E [Acinetobacter johnsonii SH046] gi|262315050|gb|EEY96090.1| ribonuclease E [Acinetobacter johnsonii SH046] Length = 1156 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 201/548 (36%), Positives = 301/548 (54%), Gaps = 1/548 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + ++ I+E+I LLVQ+ KEERGNKGAA++T++SLAGRY VLMPN Sbjct: 71 REIANSYYQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG ISR+I+ V + LKE+ L VP GM VI+RTAG R++ E++ D ++L+ LW Sbjct: 131 NPKGGGISRQISGSVREE-LKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ A + +P LV++E ++ RAIRD D++EI++ E+ Y EA +F+K +MP Sbjct: 190 AQIQNTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQ 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE Q+ + ++ EV LPS G ++I+QTEALVSID+NS +STR Sbjct: 250 IDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +EDTAL TNLEAAEEIARQLRLRD+ GL+V+DFIDM + +N R VE KL+E+ + DRA Sbjct: 310 SDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+Q G +S FGL+EMSRQR+R S+ E+T VC C G G +R S++LSI+R VEE L Sbjct: 370 RIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIAL 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + V ++ +LLN+KR T+V E GV + V+ L + I Sbjct: 430 RERHGEVQVQVPVEIAAFLLNEKRHTLVYLEQTSGVRVTVLPHPHLETPHYEISYNPEGF 489 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A + + S D A + Q+ + +++ Sbjct: 490 APTSYERTEATRSSEKELGYESSEWHLDGADHVHQHAAPAPVQQEKGNKKPRNNAPQQQV 549 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 ++ + A + ++ + + ++ GA + V Sbjct: 550 AQQAPAQTAPSSSPCAWLENLFVQKQAATVDQSRSANNAAAAIEQMVNGGAVSRGQFGQV 609 Query: 693 SIPPVSTP 700 P + Sbjct: 610 GTPAAAPI 617 Score = 118 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 51/78 (65%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ R+ + D E+ ++Q K NIY VTRVEPSL+A FV+YG Sbjct: 2 KRMLINATHAEEIRVALVTGQRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R GFL EI YYQ Sbjct: 62 AGRQGFLSMREIANSYYQ 79 >gi|299066203|emb|CBJ37387.1| ribonuclease G (RNase G) [Ralstonia solanacearum CMR15] Length = 489 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 129/567 (22%), Positives = 218/567 (38%), Gaps = 83/567 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL +I HP D + Sbjct: 60 IGLERAAFLHVADIWHP------------------------------REAKDAPAAPHVA 89 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 +E+ + I +S + G + +P + I K Sbjct: 90 IEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLP----QDSHIGISQKIGN- 144 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + +E + + ++P +G I R I + L L Sbjct: 145 ---ETDREALRQRV-------------TRMVPTDERGGFIVRTIAEEASDEELANDVAYL 188 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 I A + +D R+ + + Sbjct: 189 RKIW--ATIRHNATTLPAPSILYQDLNLAQRVLR-------------------DFVTDDT 227 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 R + E ++ + Y PIF IE +++ Sbjct: 228 RSIQIDSRENYQKLIEFAQEYTPAVVE--------RLTHYTGERPIFDLYNIEAEVERAL 279 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDME ++ +V +L+ +L +DR R+ V + S GL+EM+R+R R S+ Sbjct: 340 GGIIIIDFIDMESGEHRDAVLAELRRALARDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C+G G +++ +V ILR + Q+ + V+ L ++ + Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459 Query: 540 VEYEARFGVSINVVIGI-ELADKLFYI 565 G I++ + + + + I Sbjct: 460 AMLGDFIGKPISLQVESAAASQEQYDI 486 >gi|307730390|ref|YP_003907614.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003] gi|307584925|gb|ADN58323.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003] Length = 489 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 196/406 (48%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQHQSPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + L G I+RT T E+ D YL + W + Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQG 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ NL +R +RD + S I V + Y+ DF P+ + + Y Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSAKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ V +LK +L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLSELKRALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L ++ + G +++ + L+ + + I Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|253699355|ref|YP_003020544.1| ribonuclease, Rne/Rng family [Geobacter sp. M21] gi|251774205|gb|ACT16786.1| ribonuclease, Rne/Rng family [Geobacter sp. M21] Length = 919 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 189/530 (35%), Positives = 288/530 (54%), Gaps = 8/530 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ + D E ++ G++ +E+ A ++ + Sbjct: 8 PEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLKKLGFLQM 67 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 N + + R+ IQEV++ Q L+VQ+ K ER NKG+A+TTY+S Sbjct: 68 GELHPENW----KWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTTYVS 123 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP S ISRK+ +RK LKEI + +P G G I+RT RT+ E+ Sbjct: 124 LPGRYMVLMPG-SDSAGISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTRDEL 182 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D + L+ + +R L ++Y+E LI R IRD + DI E++V + Y + Sbjct: 183 QKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVYNDV 242 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +D +K + P++ ++V+ +++ PIF R +E Q+D +++ +V L S G + I TEALVS Sbjct: 243 RDCLKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVS 302 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+ST E +EDTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N VEK Sbjct: 303 IDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNAEVEK 362 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK +LK D+ARV V IS FGLLEMSRQRIR ++ +++T C +C G G ++S ++AL Sbjct: 363 TLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAMAL 422 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S LR V + T ++ +V YLLN+KR + + E+ + + + V Sbjct: 423 SFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTVKGKPSYLLN 482 Query: 562 LFY---IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 I++ P L+ G + + + Sbjct: 483 QMDLELIKREKPADELLLEKPAHGRSLPKEEAAQEPAAEGRKKKKKGKKP 532 >gi|323525385|ref|YP_004227538.1| Rne/Rng family ribonuclease [Burkholderia sp. CCGE1001] gi|323382387|gb|ADX54478.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1001] Length = 489 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 196/406 (48%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQHQSPHQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + L G I+RT T E+ D YL + W + Sbjct: 141 QKIESEAEREAVRARLTAVLPADEKGGYIVRTIAEDATSEELAADVAYLRKTWATILSQG 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ NL +R +RD + S I V + Y+ DF P+ + + Y Sbjct: 201 QRMPPTSLLYQDLNLAQRVLRDFVNDETSRIQVDSRETYQMLADFAAEFTPAVSAKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIEAEIQRALSRRVDLKSGGYLVIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ V +LK +L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGVIIIDFIDMENVEHRDQVLGELKRALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L ++ + G +++ + L+ + + I Sbjct: 441 RVVASQQVIDLFLEEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|241663587|ref|YP_002981947.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D] gi|240865614|gb|ACS63275.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12D] Length = 489 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 135/567 (23%), Positives = 220/567 (38%), Gaps = 83/567 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL +I HP D + Sbjct: 60 IGLERAAFLHVADIWHP------------------------------RDAKDAPPTPQVA 89 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 +E+ + I +S + G + +P + I K Sbjct: 90 IEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLP----QDPHIGISQKIGNE 145 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 ER A VT ++P +G I R I + L L Sbjct: 146 A-------EREALRARVT----------AMVPTEERGGFIVRTIAEESTDEELANDVAYL 188 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 I A + +D R+ + S I+ Sbjct: 189 RKIW--ATIRHNATTLPAPSILYQDLNLAQRVLRDFVTDETRS------------IQVDS 234 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 R+ + K I + PIF IE +++ Sbjct: 235 RENHQKLIEFAQEYTPAVVERLTHYTGE---------------RPIFDLYNIEAEVERAL 279 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDME ++ +V +L+++L +DR R+ V + S GL+EM+R+R R S+ Sbjct: 340 GGIIIIDFIDMESAEHRDAVLAELRKALSRDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C+G G +++ +V ILR + Q+ + V+ L ++ + Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459 Query: 540 VEYEARFGVSINVVIGIE-LADKLFYI 565 G I++ + + + + I Sbjct: 460 AMLGDFIGKPISLQVESSAASQEQYDI 486 >gi|222054340|ref|YP_002536702.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32] gi|221563629|gb|ACM19601.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32] Length = 503 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 140/565 (24%), Positives = 247/565 (43%), Gaps = 65/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N+++I+ + ETR+ ++ + + EL E K I GNIY +V RV P +QAAFVD Sbjct: 1 MGNELVINTT-SHETRIALIENGTIAELYIERSRVKGIVGNIYKGRVIRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ + + + + + + L Sbjct: 60 IGLEKAAFLYVADV------------------FDAMEEYDGFMDGNGKKEEPVEGEEPVL 101 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + PI QE +E + + + + G+ ++ + + + Sbjct: 102 HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 155 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + + + AG G I R ++ ++L L Sbjct: 156 SRRIEDEAERERLKEIIDRIKPAG-----------GGFIVRTVSEGKSEEDLISDLNYLT 204 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +++ + + I D + ++ ++ ++ + Sbjct: 205 KLWDE--VVKRKEKASAPLLIHSDLDVTQKVVRDILTESVERI----------------- 245 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 +V + + + F+ MP + Y++ PIF G+EV++ Sbjct: 246 ----------VVDSKPEHDKIVQFISTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 295 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR+L Sbjct: 296 RKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 355 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME + N V L+E+++ D+++ + IS GL+EM+R+R+R S+ Sbjct: 356 GIIIIDFIDMEREVNREKVFTALEEAVRGDKSKTNILKISELGLVEMTRKRVRESIGRMM 415 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+++V I R + +L I++ H V L +++R + Sbjct: 416 CEPCPYCEGRGYVKSKTTVCHEIFRELRREMLDIRGSKIMLTVHPQVADLLYDEERRGLE 475 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E F I V + F I Sbjct: 476 ELEKNFKKRITVRAKPGFHQEQFEI 500 >gi|300690885|ref|YP_003751880.1| ribonuclease G (RNase G) [Ralstonia solanacearum PSI07] gi|299077945|emb|CBJ50585.1| ribonuclease G (RNase G) [Ralstonia solanacearum PSI07] Length = 489 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 131/567 (23%), Positives = 219/567 (38%), Gaps = 83/567 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL +I HP D + Sbjct: 60 IGLERAAFLHVADIWHP------------------------------RDAKDAPPTPHVA 89 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 +E+ + I +S + G + +P + I K Sbjct: 90 IEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLP----QDPHIGISQKIGN- 144 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + +E + + ++P +G I R I + L L Sbjct: 145 ---ETDREALRQRV-------------TSMVPADERGGFIVRTIAEEATDEELANDVAYL 188 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 I A + +D R+ + S I+ Sbjct: 189 RKIW--ATIRHNATTLPAPSILYQDLNLAQRVLRDFVTDDTRS------------IQVDS 234 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 R+ Y K + + PIF IE +++ Sbjct: 235 RENYQKLVEFAQEYTPAVVERLTHYTGE---------------RPIFDLYNIEAEVERAL 279 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA IARQLRLR+L Sbjct: 280 SRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNL 339 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDME ++ +V +L+ +L +DR R+ V + S GL+EM+R+R R S+ Sbjct: 340 GGIIIIDFIDMESAEHRDAVLAELRRALARDRTRITVNSFSQLGLVEMTRKRTRESLAHV 399 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C+G G +++ +V ILR + Q+ + V+ L ++ + Sbjct: 400 LCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFRILASQSVIDLFLEEESQHL 459 Query: 540 VEYEARFGVSINVVIGI-ELADKLFYI 565 G I++ + + + + I Sbjct: 460 AMLGDFIGKPISLQVESAAASQEQYDI 486 >gi|15616953|ref|NP_240166.1| ribonuclease E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11387055|sp|P57429|RNE_BUCAI RecName: Full=Ribonuclease E; Short=RNase E gi|25403604|pir||D84970 ribonuclease E [imported] - Buchnera sp. (strain APS) gi|10039018|dbj|BAB13052.1| ribonuclease E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 902 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + S ++ + I E S+ +A D Sbjct: 12 EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I+ V++ Q ++VQI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 72 EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N+ K ISR+I + + LE+P M +I+RTAGA ++ ++ D ++ Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330 W ++ +A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q +V LPS G ++++ TEAL +ID+NS RST Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 I TA TNLEA +EI+RQLRLRDL GLIV+DFIDM + R++E +L+E + D Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ SS+ ES+ +C C G G IR S++LSILR +EE Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + ++ YLLN+KR + E R G +V ++ + + + Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490 Query: 570 PVQALVNTGHKVG 582 ++ T + + Sbjct: 491 KSESKNYTRYGLS 503 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLP EI +Y+ Sbjct: 62 EEKNGFLPLKEISKNYF 78 >gi|255349209|ref|ZP_05381216.1| ribonuclease E [Chlamydia trachomatis 70] gi|255503746|ref|ZP_05382136.1| ribonuclease E [Chlamydia trachomatis 70s] gi|255507427|ref|ZP_05383066.1| ribonuclease E [Chlamydia trachomatis D(s)2923] gi|289525852|emb|CBJ15334.1| ribonuclease E [Chlamydia trachomatis Sweden2] gi|296435436|gb|ADH17614.1| ribonuclease E [Chlamydia trachomatis E/150] gi|296439153|gb|ADH21306.1| ribonuclease E [Chlamydia trachomatis E/11023] Length = 512 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I + + DV + Sbjct: 51 ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + A A E E+ I+E++K + Sbjct: 87 DSDADHAEPQPEETSEAP-------------------------------IEELLKLDSPV 115 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P+ R LK++ R E Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA S + + + + L+ W ++ E + P L+YEE +++K+A+ Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K +++ Y++ K + P + Y D P+F R IE ++D + Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538 C YC G I++ S+ + I R +++ + N+ + H ++ Y+ ++ Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAYYMKQEQDDVE 474 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500 >gi|76789551|ref|YP_328637.1| ribonuclease E [Chlamydia trachomatis A/HAR-13] gi|237803239|ref|YP_002888433.1| ribonuclease E [Chlamydia trachomatis B/Jali20/OT] gi|237805160|ref|YP_002889314.1| ribonuclease E [Chlamydia trachomatis B/TZ1A828/OT] gi|76168081|gb|AAX51089.1| ribonuclease E [Chlamydia trachomatis A/HAR-13] gi|231273460|emb|CAX10375.1| ribonuclease E [Chlamydia trachomatis B/TZ1A828/OT] gi|231274473|emb|CAX11268.1| ribonuclease E [Chlamydia trachomatis B/Jali20/OT] Length = 512 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I + + DV + Sbjct: 51 ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + A A E E+ I+E++K + Sbjct: 87 DSDADHAEPQPEETSEAP-------------------------------IEELLKLDSPV 115 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P+ R LK++ R E Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA S + + + + L+ W ++ E + P L+YEE +++K+A+ Sbjct: 175 MPQNMGLICRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K +++ Y++ K + P + Y D P+F R IE ++D + Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538 C YC G I++ S+ + I R +++ + N+ + H ++ Y+ ++ Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500 >gi|255311645|ref|ZP_05354215.1| ribonuclease E [Chlamydia trachomatis 6276] gi|255317946|ref|ZP_05359192.1| ribonuclease E [Chlamydia trachomatis 6276s] gi|296436360|gb|ADH18534.1| ribonuclease E [Chlamydia trachomatis G/9768] gi|296438219|gb|ADH20380.1| ribonuclease E [Chlamydia trachomatis G/11074] gi|297140720|gb|ADH97478.1| ribonuclease E [Chlamydia trachomatis G/9301] Length = 512 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I + + DV + Sbjct: 51 ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + A A E E+ I+E++K + Sbjct: 87 DSDADHAEPQPEETSEAP-------------------------------IEELLKLDSPV 115 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P+ R LK++ R E Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA S + + + + L+ W ++ E + P L+YEE +++K+A+ Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K +++ Y++ K + P + Y D P+F R IE ++D + Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538 C YC G I++ S+ + I R +++ + N+ + H ++ Y+ ++ Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500 >gi|32490837|ref|NP_871091.1| hypothetical protein WGLp088 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166043|dbj|BAC24234.1| rne [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 783 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 185/490 (37%), Positives = 271/490 (55%), Gaps = 8/490 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I N +++ + I E S+ + D Sbjct: 12 EELRIALVDGQKLYDLDIENLRYIQKKSNIYKGKITRIEPSLEAVFIDYGEERHGFLPFK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I++++K Q L+VQI KE RGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAIEYLYKNNIYYNKSNIKDILKENQELIVQIEKEARGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N K ISR I + LKEI LE+P GMG+I+RTAG ++ ++K D + + Sbjct: 132 NNPKSGGISRHIEGEDRTE-LKEILYSLEIPNGMGIIIRTAGLGKSIKDLKLDLSFRLSH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMP 330 WD +++ A AP L+Y E +++ RA RD DI EI++ K +K+++ L P Sbjct: 191 WDKIKKAAQKKRAPCLIYRESDVVSRAFRDYLRPDIKEILIDNPKILELSKEYIISLGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + + ++ Y P+F IE Q++S Q EV LPS G + I+ TEAL +ID+NS +ST Sbjct: 251 DFIKKIKLYSGEVPLFSHYQIESQIESAFQREVKLPSGGSIFIDNTEALTAIDINSAKST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R I +TA TNLEA EI+ QLRLRDL GLIV+DFIDM K+ R VEK LKE K+D Sbjct: 311 RGIDISETAFNTNLEAVHEISIQLRLRDLGGLIVIDFIDMNTSKHQREVEKLLKELAKQD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLE+SRQR+ S+ ES+ +C C G G IR + S++LSILR +EE Sbjct: 371 RARIQIGQISKFGLLELSRQRMSHSLRESSHYICPRCNGTGTIRDKESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELADKLFYIEKGS 569 ++ + + D+ YLLN+KR + E R GV ++ ++ + + + Sbjct: 431 SIKDNTYKVYTIVPVDIASYLLNEKRDAVSAIEKRKQGVRTVIIPNDKMKTPNYLVLRVK 490 Query: 570 PVQALVNTGH 579 + + Sbjct: 491 IGEQSNIPSY 500 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE R+ ++ ++ +LD E+ Q K NIY K+TR+EPSL+A F+DYG Sbjct: 2 KRMLINATQQEELRIALVDGQKLYDLDIENLRYIQKKSNIYKGKITRIEPSLEAVFIDYG 61 Query: 63 GNRHGFLPFLEIHPDY-YQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 RHGFLPF EI +Y Y+ ++ +K+ + + G+ Sbjct: 62 EERHGFLPFKEIAIEYLYKNNIYYNKSNIKDILKENQELIVQIEKEARGN 111 >gi|91225602|ref|ZP_01260676.1| cytoplasmic axial filament protein [Vibrio alginolyticus 12G01] gi|254229268|ref|ZP_04922686.1| ribonuclease, Rne/Rng family [Vibrio sp. Ex25] gi|262393160|ref|YP_003285014.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio sp. Ex25] gi|269968022|ref|ZP_06182060.1| cytoplasmic axial filament protein [Vibrio alginolyticus 40B] gi|91189722|gb|EAS75996.1| cytoplasmic axial filament protein [Vibrio alginolyticus 12G01] gi|151938192|gb|EDN57032.1| ribonuclease, Rne/Rng family [Vibrio sp. Ex25] gi|262336754|gb|ACY50549.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio sp. Ex25] gi|269827379|gb|EEZ81675.1| cytoplasmic axial filament protein [Vibrio alginolyticus 40B] Length = 489 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 122/565 (21%), Positives = 211/565 (37%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E ++ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGVLQEIHIERESRRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + E+ Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAENEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ K+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEKERERLKKV------------- 157 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + G + T A K + + + +E Sbjct: 158 ---VNHYCDEHGGFIIRTAAEGADE----------------KELSQDAAFLKRLWLKVME 198 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + G I R + + + Sbjct: 199 RRSKYKTRSTLYGELGLAQRILR-----------------------------DFVGTELD 229 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E E + L + +E +++ Sbjct: 230 KIMVDSRLEYENLKEFTSEYVPELTDKLELYEGDKPIFDMYDTENEIQRSLERKVE---- 285 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 286 ----LKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM +++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMASEEHRQRVLTSLETALAKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A N +V+ V LL + + Sbjct: 402 CSGCPTCEGRGSVKTVETVCFEILREITRVNRAYDADNFVVYASPFVAEALLGDESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + V + F + Sbjct: 462 ELEVFIGKQVRVQAEPLYIQEQFDV 486 >gi|71905822|ref|YP_283409.1| ribonuclease G [Dechloromonas aromatica RCB] gi|71845443|gb|AAZ44939.1| RNAse G [Dechloromonas aromatica RCB] Length = 483 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 124/407 (30%), Positives = 210/407 (51%) Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 P++ + I++++ + Q +LVQ+VK+ G KGA ++T +S+AGR V +P Sbjct: 74 WQPRETATERPIEKILHDGQSILVQVVKDPIGTKGARLSTQVSIAGRMLVYLPQEKHIGI 133 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 R + ++I R + G I+RT S + E D YL + W ++R+ Sbjct: 134 SQRIESEAEREVLREKITRLVPSDEPGGFIVRTMAESASDEEFATDIAYLRKTWADIRDK 193 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 A S P L+Y+E +L +R +RD + + I + + +++ F + P+ ++ Sbjct: 194 ARTSGPPTLLYQELSLGQRVLRDFVNPETTRIFIDSRENFQKLTGFAEEYTPAVLPLLEH 253 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y P+F G+E ++ V L S GY+II+QTEA+ +IDVN+G +DT Sbjct: 254 YTGQRPLFDLHGVEEEIQKALARRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGVRNFDDT 313 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEAA IARQLRLR+L G+I+VDFIDME +++ ++V + +L D R+ V Sbjct: 314 IFKTNLEAAVTIARQLRLRNLGGIIIVDFIDMENEEHKKAVLDEFNRALAHDHTRLTVNG 373 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 + GL+EM+R+R R S+ C C G G +++ +VA ILR + Q+ A Sbjct: 374 FTQLGLVEMTRKRTRESLAHVLCHPCPTCTGRGEVKTARTVAYEILRELLREARQFNARE 433 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + DVV L+++ + G S+++ + + + I Sbjct: 434 YRILAGPDVVDLFLDEESQALAMLSDFIGKSVSLQSEPSYSPEQYDI 480 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV V++ V+EL E + + GN+YL +V R+ P +Q+AF+D Sbjct: 1 MTEEILINFT-PQETRVAVMQQGVVQELHIERTASRGLVGNVYLGRVVRILPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R FL +I Sbjct: 60 VGLDRTAFLHVADI 73 >gi|219682261|ref|YP_002468645.1| ribonuclease E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621994|gb|ACL30150.1| ribonuclease E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 902 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + S ++ + I E S+ +A D Sbjct: 12 EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I+ V++ Q ++VQI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 72 EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N+ K ISR+I + + LE+P M +I+RTAGA ++ ++ D ++ Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330 W ++ +A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q +V LPS G ++++ TEAL +ID+NS RST Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 I TA TNLEA +EI+RQLRLRDL GLIV+DFIDM + R++E +L+E + D Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ SS+ ES+ +C C G G IR S++LSILR +EE Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + ++ YLLN+KR + E R G +V ++ + + + Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490 Query: 570 PVQALVNTGHKVG 582 ++ T + + Sbjct: 491 KSESKNYTRYGLS 503 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLP EI +Y+ Sbjct: 62 EEKNGFLPLKEISKNYF 78 >gi|86143783|ref|ZP_01062159.1| Ribonuclease G [Leeuwenhoekiella blandensis MED217] gi|85829826|gb|EAQ48288.1| Ribonuclease G [Leeuwenhoekiella blandensis MED217] Length = 511 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 160/568 (28%), Positives = 267/568 (47%), Gaps = 64/568 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N+++I S +L+D ++ EL + E + G+I++AK+ + L AAFV+ Sbjct: 1 MNNELII-RSSSTSVDFALLKDGKLIELHKDEEDNQFSVGDIFIAKIRKTVSGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P Q+P LLK T D + + D Sbjct: 60 VGYEKDAFLHYHDLGP---QLPT-----LLKFVKRVSTGKLK---DFSLKNFPAEKDID- 107 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + I + +K+ Q + Sbjct: 108 ---------------------------------------------KNGKIADAVKSNQSI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE KG +++ LS+AGRY VL+P + + +IS+KI + ++ LK + + + Sbjct: 123 LVQVVKEPISTKGPRISSELSIAGRYVVLVPFSDR-ISISQKIESREEKARLKRLMQSIR 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G GVI+RT + E+ +D + L+ W + + N+ P V E N +R Sbjct: 182 PK-GFGVIVRTVAEGKMVAELDKDLQNLVDRWTAMCKKLHNAHLPSKVLGEMNRASSMLR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ + I V E Y + KD+++ + P+ IV+ Y++ PI+ + GIE Q+ + Sbjct: 241 DLFNDSFTNICVDDETLYYQIKDYLQEIAPNKESIVKLYQNTVPIYEKHGIERQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEAL IDVNSG RS++ EDTAL+ NL AA EIARQLRLRD+ Sbjct: 301 KTVSMSRGAYLVIEHTEALHVIDVNSGNRSSKAKSQEDTALEVNLIAATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM + +N + + L++ + DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMGKAENRKKLFNHLRDEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + G G I + SV I + L + I +HTH + +L + Sbjct: 421 TREKDP--NGDGEIEAPISVVNRIQ-ADLIKLFKKDYKKITLHTHPFIAAFLTKGFPSVR 477 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEK 567 ++ + ++ + K Sbjct: 478 SKWFLEHKKWVKIMPRDAYTYLEYRFTK 505 >gi|257471402|ref|ZP_05635401.1| ribonuclease E [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 902 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + S ++ + I E S+ +A D Sbjct: 12 EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I+ V++ Q ++VQI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 72 EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N+ K ISR+I + + LE+P M +I+RTAGA ++ ++ D ++ Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330 W ++ +A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q +V LPS G ++++ TEAL +ID+NS RST Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 I TA TNLEA +EI+RQLRLRDL GLIV+DFIDM + R++E +L+E + D Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ SS+ ES+ +C C G G IR S++LSILR +EE Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + ++ YLLN+KR + E R G +V ++ + + + Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490 Query: 570 PVQALVNTGHKVG 582 ++ T + + Sbjct: 491 KSESKNYTRYGLS 503 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLP EI +Y+ Sbjct: 62 EEKNGFLPLKEISKNYF 78 >gi|219681706|ref|YP_002468092.1| ribonuclease E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624549|gb|ACL30704.1| ribonuclease E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 902 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + S ++ + I E S+ +A D Sbjct: 12 EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I+ V++ Q ++VQI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 72 EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N+ K ISR+I + + LE+P M +I+RTAGA ++ ++ D ++ Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330 W ++ +A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q +V LPS G ++++ TEAL +ID+NS RST Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 I TA TNLEA +EI+RQLRLRDL GLIV+DFIDM + R++E +L+E + D Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ SS+ ES+ +C C G G IR S++LSILR +EE Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + ++ YLLN+KR + E R G +V ++ + + + Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490 Query: 570 PVQALVNTGHKVG 582 ++ T + + Sbjct: 491 KSESKNYTRYGLS 503 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLP EI +Y+ Sbjct: 62 EEKNGFLPLKEISKNYF 78 >gi|167625740|ref|YP_001676034.1| ribonuclease G [Shewanella halifaxensis HAW-EB4] gi|167355762|gb|ABZ78375.1| ribonuclease, Rne/Rng family [Shewanella halifaxensis HAW-EB4] Length = 502 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 122/562 (21%), Positives = 212/562 (37%), Gaps = 80/562 (14%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI+ + E RV ++ ++E+ E K+ + GNIY KV+RV P +QAAFVD G Sbjct: 18 ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 76 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 ++ FL +I P + +D + +A+ V G + Sbjct: 77 DKAAFLHASDIVP--HTECVADVEK-------GNFVVRDIAELVRQGQDIMVQVVKDPLG 127 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 A + + S S+V + E+V + K+ Sbjct: 128 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEVRARLKK----------------I 171 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + G + T AG ++ + R++ V + + L Sbjct: 172 TQPFVDDDGGFIIRTAAESAGEDELV-----QDAGFLRRVWAKVSERRKRRGVSLLYQDL 226 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 + V + +I+ D + + +A L + G + + D Sbjct: 227 ALPVRIVRDFVGTELDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYD-- 284 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +E ++ +V Sbjct: 285 -----------------------------------------------VENEVQRALGRKV 297 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY+II+QTEA+ ++D+N+G + +T TNLEA IARQLRLR+L G+I Sbjct: 298 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGII 357 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 ++DFIDM ++ + V L+ +L KDR + + S GL+EM+R+R R S+ Sbjct: 358 IIDFIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 417 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G +++ +V+ I R + Y A +V+ +V L + + E E Sbjct: 418 CPACLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELE 477 Query: 544 ARFGVSINVVIGIELADKLFYI 565 G + + A F + Sbjct: 478 VYIGKRVRLQNEPMYAQNKFDV 499 >gi|311086656|gb|ADP66737.1| ribonuclease E [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 902 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 176/493 (35%), Positives = 269/493 (54%), Gaps = 8/493 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + S ++ + I E S+ +A D Sbjct: 12 EELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + I+ V++ Q ++VQI KEERG KGAA+TT++SLAG Y VLMP Sbjct: 72 EISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N+ K ISR+I + + LE+P M +I+RTAGA ++ ++ D ++ Sbjct: 132 NSPKSGGISRRIEGNDRIALKELL-TLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM-P 330 W ++ +A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLARKHITFLGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q +V LPS G ++++ TEAL +ID+NS RST Sbjct: 251 DFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALTAIDINSSRST 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 I TA TNLEA +EI+RQLRLRDL GLIV+DFIDM + R++E +L+E + D Sbjct: 311 SGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIENRLREIARDD 370 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ SS+ ES+ +C C G G IR S++LSILR +EE Sbjct: 371 RARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLSLSILRLIEEE 430 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ + + ++ YLLN+KR + E R G +V ++ + + + Sbjct: 431 ALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMKTPHYSVSRIR 490 Query: 570 PVQALVNTGHKVG 582 ++ T + + Sbjct: 491 KSESKNYTRYGLS 503 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD E +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLP EI +Y+ Sbjct: 62 EEKNGFLPLKEISKNYF 78 >gi|166154150|ref|YP_001654268.1| ribonuclease E [Chlamydia trachomatis 434/Bu] gi|166155025|ref|YP_001653280.1| ribonuclease E [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335391|ref|ZP_07223635.1| ribonuclease E [Chlamydia trachomatis L2tet1] gi|165930138|emb|CAP03622.1| ribonuclease E [Chlamydia trachomatis 434/Bu] gi|165931013|emb|CAP06576.1| ribonuclease E [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 512 Score = 281 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 161/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I + + DV + Sbjct: 51 ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + A A E E+ I+E++K + Sbjct: 87 DSDADHAEPRPEETSEAP-------------------------------IEELLKLDSPV 115 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P+ R LK++ R E Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA S + + + + L+ W ++ E + P L+YEE +++K+A+ Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K +++ Y++ K + P + Y D P+F R IE ++D + Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538 C YC G I++ S+ + I R +++ + N+ + H ++ Y+ ++ Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500 >gi|15605542|ref|NP_220328.1| ribonuclease E [Chlamydia trachomatis D/UW-3/CX] gi|3329275|gb|AAC68404.1| Axial Filament Protein [Chlamydia trachomatis D/UW-3/CX] gi|296437291|gb|ADH19461.1| ribonuclease E [Chlamydia trachomatis G/11222] Length = 512 Score = 281 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 160/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I + + DV + Sbjct: 51 ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 86 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + A A E ++ I+E++K + Sbjct: 87 DSDADHAEPQPEETSKAP-------------------------------IEELLKLDSPV 115 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P+ R LK++ R E Sbjct: 116 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 174 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA S + + + + L+ W ++ E + P L+YEE +++K+A+ Sbjct: 175 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 234 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K +++ Y++ K + P + Y D P+F R IE ++D + Sbjct: 235 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 294 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 295 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 354 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 355 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 414 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538 C YC G I++ S+ + I R +++ + N+ + H ++ Y+ ++ Sbjct: 415 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 474 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 475 LIRLAKQLKAKLQINTSDSIHLNHYQ 500 >gi|39996024|ref|NP_951975.1| ribonuclease, Rne/Rng family protein [Geobacter sulfurreducens PCA] gi|39982789|gb|AAR34248.1| ribonuclease, Rne/Rng family protein [Geobacter sulfurreducens PCA] Length = 808 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 197/551 (35%), Positives = 295/551 (53%), Gaps = 8/551 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ + D E + T G+V +E A F + Sbjct: 12 PEESRVAIVEDGKLVDLDIEIEGSEQTRGNVYKGVVVRVE-PGLQAAFVDIGLKRLGFLQ 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ + + PE+ R+ IQEVI+ Q L+VQ+ K ER KGAA+TTY+S Sbjct: 71 MGEIHPSFWQWRSDIPEESRS---RRPRIQEVIRRGQELIVQVEKGERDMKGAALTTYMS 127 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 GRY VLMP S ISRK+ + DRK LKE LE+P G G I+RT +TK E+ Sbjct: 128 FPGRYMVLMPG-SDSAGISRKVESESDRKKLKEKVAELEIPEGYGYIVRTEALGKTKTEL 186 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +YL++L + + A + P L++ E +++ R IRD + +I E++V + Y++A Sbjct: 187 AKDLQYLVKLHQGIVDKAAAAKGPTLLHRELDVVIRTIRDYFTAEIDEVLVDSKDVYKQA 246 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 ++F K MP + ++V+ + + PIF R IE Q+D +++ +V L S GY+II TEALVS Sbjct: 247 REFFKQTMPKFEKLVKLHTEKRPIFSRYQIEEQIDLIYEKKVPLKSGGYLIIEPTEALVS 306 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG++T E +EDTA +TNLEAAEE ARQLR+RDL GLIV+DFIDM +KK+ +VEK Sbjct: 307 IDVNSGKTTGEKGVEDTAYKTNLEAAEEAARQLRMRDLGGLIVLDFIDMRDKKHITAVEK 366 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK +LK D+ARV VG IS FG+LEMSRQRIR ++ + +T C +C G G ++S ++AL Sbjct: 367 TLKAALKGDKARVTVGRISQFGMLEMSRQRIRQTLEQGSTLECPHCSGRGKVKSVENMAL 426 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S LR V + T + +V YLLN+K+ + + E + + + V Sbjct: 427 SFLRKVHAAAAKGTVAEVHGGLPLEVAYYLLNRKKRELAQIENEYDIVVTVKGKTSFLMN 486 Query: 562 LFYIE---KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 +E + P + H A ++E + + Sbjct: 487 QLELELVRREKPAHVETHEEHAEKVAEALAEGLPEAAEGTDVPAEASTAETEGKKKKRRR 546 Query: 619 IVSEESTGVIR 629 + Sbjct: 547 SRRKGKAEAEE 557 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 4/105 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA KMLI+ H EE+RV ++ D ++ +LD E E +Q +GN+Y V RVEP LQAAFVD Sbjct: 1 MAKKMLINVMHPEESRVAIVEDGKLVDLDIEIEGSEQTRGNVYKGVVVRVEPGLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQ----IPFSDRQALLKESNIAQTDSE 101 G R GFL EIHP ++Q IP R + + + E Sbjct: 61 IGLKRLGFLQMGEIHPSFWQWRSDIPEESRSRRPRIQEVIRRGQE 105 >gi|197116559|ref|YP_002136986.1| ribonuclease G [Geobacter bemidjiensis Bem] gi|197085919|gb|ACH37190.1| ribonuclease G [Geobacter bemidjiensis Bem] Length = 496 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 142/565 (25%), Positives = 247/565 (43%), Gaps = 72/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N+++I+ + ETR+ ++ + + EL E K I GNIY +V RV P +QAAFVD Sbjct: 1 MGNELVINTT-SHETRIALIENGTIAELYVERSRVKGIIGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ +A+ + ++ + ++ Sbjct: 60 IGLEKAAFLYVADV-------------------------FDAMDEYDSYIEGEQGDEPMP 94 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + PI QE +E + + + + G+ ++ + + + Sbjct: 95 HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 148 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + + + G G I R +++ ++L L Sbjct: 149 SRRIEDEAERERLKEIVDRIKPVG-----------GGFIVRTVSDGKSEEDLVADLHYLT 197 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I + + I D + ++ ++ ++ + Sbjct: 198 KLWDE--IAKKKDKAGAPTLIHSDLDVTQKVVRDILTESVERI----------------- 238 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 +V + Y + F+ MP + Y++ PIF G+EV++ Sbjct: 239 ----------VVDSKPEYDKIVQFISTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALG 288 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR+L Sbjct: 289 RKVWLKSGGYIIIEQTEALTAIDVNTGRYVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 348 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+E+LK D+++ + IS GL+EM+R+R+R S+ Sbjct: 349 GIIIIDFIDMEKEVNREKVYGALEEALKSDKSKTNILKISELGLVEMTRKRVRESLGRMM 408 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+ SV I R + +L +++ H V L +++R + Sbjct: 409 CEPCPYCEGRGYVKSKISVCHEIFRELRREMLDIRGTKVMLTVHPQVADLLYDEERRGLE 468 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E F I V + F + Sbjct: 469 ELEKNFKKRITVRAKPGFHQEQFEV 493 >gi|115380147|ref|ZP_01467180.1| ribonuclease G [Stigmatella aurantiaca DW4/3-1] gi|115362852|gb|EAU62054.1| ribonuclease G [Stigmatella aurantiaca DW4/3-1] Length = 905 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 153/584 (26%), Positives = 257/584 (44%), Gaps = 7/584 (1%) Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186 E+ + D + +D K ++ I++++K Q ++VQI K Sbjct: 300 EAREPRHREKDRDGRDKDKSRRPREEHSRREKDEKSKVRKSSRIEDLLKVGQEVVVQISK 359 Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246 + G KGA +T+++S+ GR+ V MP ISR+I+N +RK L+EI L P G G Sbjct: 360 DPIGTKGARLTSHISIPGRHLVFMPTVDHVG-ISRRISNEKERKRLREIVDRLRPP-GTG 417 Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 I+RT + + +++ D +L+ +W+ V P L++ + +LI RA RDL+ D Sbjct: 418 FIVRTVAENVPQEKLETDIRFLIEVWNQVVRRNEKRGGPGLLHPDLDLILRATRDLFAHD 477 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 + +++V + Y F+ P V +E P+F GIE ++ Q +V L Sbjct: 478 VEKLVVDDREEYERILAFVTAQDPLLKDRVVLHEGDEPVFDAYGIEQEMHRATQRKVWLK 537 Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 S GY+II+Q EAL +IDVNSGR + +E+T + N+EAA+EI QLRLR++ G+I+ D Sbjct: 538 SGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICD 597 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDME+ +N V K L+E+L +D+A+ V IS GL+EM+R+R+R S+ + C Y Sbjct: 598 FIDMEKAQNRDKVFKSLQEALGRDKAKTNVLRISELGLVEMTRKRVRESIGRVLHEDCPY 657 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G G++++ ++V I R + Y ++++ ++V L ++R + R+ Sbjct: 658 CDGRGFVKTATTVTYEIFREIRREAPGYKDSTLVINCSAEVARQLQGEERQELRHLMDRY 717 Query: 547 GVSINVVIGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---- 601 SI V + + I + D + + + Sbjct: 718 NKSIQVKAQQNYHREQYDIYGRSGMGPEHKVASSPGSGDGELAMQRRPENGGHGERYRQE 777 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 + D + + R R +N Sbjct: 778 QGRRGGGRGDRNERGDRGERGDRNERGDRGERGGGERGGGERGGGERGDRGERGERNDRG 837 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 D + N G +TPE SS Sbjct: 838 DRREGRRPDRGDRNRGGERRGDERRGGESQRPPQAAATPEPSSS 881 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + ++I+A+ ETRV ++ + E E + K + GNIY +V RV P +QAAFVD Sbjct: 1 MGSILVINAA-GRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIH--PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 G + FL ++ PD+ + F + ++ T+SEA A + GD D Sbjct: 60 IGLEKAAFLYVSDVVYDPDFARAQFELTEGEHEDFPEVPTESEAEAAEAAAGDTPAGPDT 119 Query: 119 SLE-EVAPIANFSQETEEESIISANNDVVSNV 149 LE EV +A + + + V+ V Sbjct: 120 ELELEVQELAPGELPPPQGEPPALPPEAVATV 151 >gi|94501795|ref|ZP_01308308.1| Ribonucleases G and E [Oceanobacter sp. RED65] gi|94426103|gb|EAT11098.1| Ribonucleases G and E [Oceanobacter sp. RED65] Length = 491 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 126/411 (30%), Positives = 218/411 (53%), Gaps = 3/411 (0%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 +D ++ I ++ Q L+VQ+ K+ G KGA +TT+LS+ RY V MP + Sbjct: 78 KDSEAAKRQPDAITSLVHEGQSLVVQVTKDPIGTKGARLTTHLSIPSRYLVFMPYSQHVG 137 Query: 218 TISRKITNPVDRKNLKEIARGLEVP---AGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + K + +E G ILRTA + EI D YL R+W Sbjct: 138 ISQRIEDEGERDRLRKLVLSCMEAEGLSDECGFILRTAAEGAGEDEILMDTRYLQRVWGK 197 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 V+E ++ AP ++YEE L R RD ++ ++++ + + +A++F + +P Sbjct: 198 VQERMKSADAPSVIYEELPLHLRTFRDFIRPEVDKVLIDSRENFSKAQEFAQSFVPEVEN 257 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF +E ++ + +V L S GY+II+QTEA+ +IDVN+G Sbjct: 258 KLEYYPGERPIFDLYAVEDEIQKALERKVQLKSGGYLIIDQTEAMTTIDVNTGGFVGHRN 317 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +E+T +TNLEAA I RQLRLR+L G+I++DFIDME+ ++ R V + L++ L+KD A+ Sbjct: 318 LEETIFKTNLEAATVIGRQLRLRNLGGIIILDFIDMEDVEHQRQVLRMLEKVLEKDHAKT 377 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 ++ +S GL+EM+R+R R S+ + + C +C G G I++ ++ I R + Y Sbjct: 378 KISQVSELGLVEMTRKRTRESLGQMICEPCHHCDGRGTIKTAETICYEIFRELLREARAY 437 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A+ +V V+ L+++ ++ + E G +I + + + + + + Sbjct: 438 DANGYLVLASQGVIDLFLDEESQSLADLENFIGKTIKLQVEPLYSQEQYDV 488 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 63/458 (13%), Positives = 130/458 (28%), Gaps = 46/458 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETR+ ++ + ++E+ E +++ I GNIY KV RV P +QAAFVD Sbjct: 1 MNTEILLNVT-PTETRMGLVENGVLQEVSIERSNRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R F+ +IH P D +A A+ +A+ V G + Sbjct: 60 VGLERAAFIHAADIH-----GPAKDSEA-------AKRQPDAITSLVHEGQSLVVQVTKD 107 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI- 179 A + S +V + E + ++ + Sbjct: 108 PIGTKGARLTTHLSIPSRYLVFMPYSQHVGISQRIEDEGERDRLRKLVLSCMEAEGLSDE 167 Query: 180 --LLVQIVKEERGNKGAAVTT------------YLSLAGRYSVLMPNTSKGETISRKITN 225 +++ E G + T + A SV+ R Sbjct: 168 CGFILRTAAEGAGEDEILMDTRYLQRVWGKVQERMKSADAPSVIYEELPLHLRTFRDFIR 227 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASR-----TKIEIKRDFEYLMRLWDNVRELAL 280 P K L + ++ + I + + + Sbjct: 228 PEVDKVLIDSRENFSKAQEFAQSFVPEVENKLEYYPGERPIFDLYAVEDEIQKALERKVQ 287 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 +L+ ++ + + + + + Sbjct: 288 LKSGGYLIIDQTEAMTTIDVNTGGFVGHRNLEETIFKTNLEAATVIGRQLRLRNLGGIII 347 Query: 341 DPHPIFFRSGIEVQLDSLHQT-------EVTLPSRGYVIINQT------EALVSIDVNSG 387 + Q+ + + + + + + + E+L + Sbjct: 348 LDFIDMEDVEHQRQVLRMLEKVLEKDHAKTKISQVSELGLVEMTRKRTRESLGQMICEPC 407 Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425 TA E E+ R+ R D G +V+ Sbjct: 408 HHCDGRGTIKTAETICYEIFRELLREARAYDANGYLVL 445 >gi|256419986|ref|YP_003120639.1| ribonuclease, Rne/Rng family [Chitinophaga pinensis DSM 2588] gi|256034894|gb|ACU58438.1| ribonuclease, Rne/Rng family [Chitinophaga pinensis DSM 2588] Length = 516 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 150/567 (26%), Positives = 258/567 (45%), Gaps = 65/567 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I+A+ + +L D ++ EL ES + G++YL +V ++ P L AAFVD Sbjct: 1 MNKELIINAA-PTGVEIALLEDKKLVELHHESGNPNFSVGDLYLGRVKKLIPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P I +QA+ Sbjct: 60 VGFEKDAFLHYTDLSPYIRSILKFTQQAI------------------------------- 88 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 S +T E + + V + I +V+ + + Sbjct: 89 ---------SDKTPEGFDFTKFKNEPEIV----------------KTGKITDVLGGKPNI 123 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQI+KE +KG ++ +SL GR+ VL P +S+KI + +RK L++I ++ Sbjct: 124 LVQILKEPISSKGPRLSCEISLPGRFIVLTPFND-IVAVSKKIHSSEERKRLQKIVEAIK 182 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P GVI+RTA + E+ D L+ W N++ + P + E +R Sbjct: 183 TP-NFGVIVRTAAEGKKTAELHEDLTTLVETWKNIQANLRGAQPPQKILSEQAKTTSILR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL + + I+++ Y + + +++ + P IV+ Y + PIF G+ Q+ + Sbjct: 242 DLLNESFNRIVINDRNMYSDTRAYIQKIAPEKQDIVQHYHNGAPIFDHYGVTRQVKASFG 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S Y+II TEAL IDVNSG + + E AL +NLEAA EIARQLRLRDL Sbjct: 302 KTVNLDSGVYLIIEATEALHVIDVNSGYKSSSNNQEQNALASNLEAAAEIARQLRLRDLG 361 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+ +N + V + +++ + +DRA+ + IS FGL++++RQR++ V S Sbjct: 362 GIIIIDFIDMKLPENKKVVYEAMEKFMAQDRAKHTILPISKFGLMQITRQRVKPEVTISV 421 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK---RA 537 + C C G G I + + + ++++ + + + H YL R Sbjct: 422 AEDCPTCHGTGKIGASVLIIDEVEKNLQYLINHQ-HKGLTLRVHPIFYSYLAKGFLTSRQ 480 Query: 538 TIVEYEARFGVSINVVIGIELADKLFY 564 ++ + + V + Sbjct: 481 WKWYFQ--YKKWVKVKADSNYHLTEYR 505 >gi|89898012|ref|YP_515122.1| ribonuclease G/E [Chlamydophila felis Fe/C-56] gi|89331384|dbj|BAE80977.1| ribonuclease G/E [Chlamydophila felis Fe/C-56] Length = 510 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 168/566 (29%), Positives = 284/566 (50%), Gaps = 70/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I D+ +G + I + Sbjct: 51 ----RN-------IQSAFINI-----------------------DERENGFIHISDV--- 73 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + E + + DV+S K +P I+E++K + Sbjct: 74 --------LENSKKFEQMFDMDFDVLSKENGEKPEAP------------IEELLKLDSPV 113 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P R LK++ R E Sbjct: 114 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFE 172 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA + + + L+ W + E ++ P L+YEE +++K+A+ Sbjct: 173 MPQDMGLICRTASTLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVI 232 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K+ +++ Y++ K +K P + + Y D P+F R IE ++D + Sbjct: 233 TCIDKNHKRLLIDDYSTYQKCKRMLKKYSPDSSVKIEYYRDSTPMFERFNIEKEIDKATK 292 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 293 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 352 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 353 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 412 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RAT 538 C YC G I++ SV + I R +++ + N+ + H ++ Y+ +K Sbjct: 413 LFTTCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHTNLCLVVHPEIANYMKQEKDDDE 472 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + L + Sbjct: 473 LIRLAKHLKAKLQINTSDSLHLNHYQ 498 >gi|218779045|ref|YP_002430363.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01] gi|218760429|gb|ACL02895.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01] Length = 487 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 170/419 (40%), Positives = 252/419 (60%), Gaps = 1/419 (0%) Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + I+ ++K LLVQI K+ KGA +TT++SLAGRY VLM Sbjct: 70 QKNEIHSDYFMDTHSGDTAIKNLLKPGMELLVQITKDPVDKKGAMLTTFISLAGRYVVLM 129 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 P SK +SRKI +R LK+I +P G GVI+RT G TK I +D ++L R Sbjct: 130 PG-SKTRGVSRKIEEEEERVRLKKILDSCTIPEGFGVIVRTVGKKGTKSVISQDIKHLHR 188 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW + + + AP L+ +E +L R++RD + D++ I+V Y E K+FM ++ P Sbjct: 189 LWKTINKKGIEEKAPALLNKEQSLAIRSLRDNFNADVNSILVDDPNAYEEIKEFMSVIAP 248 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++VR +++ PIF + +E+Q+ S+ +++V L S G ++I+ TEALVSIDVNSG+ST Sbjct: 249 RRKKVVRLHKEERPIFSKYQLEMQIASIFESKVNLKSGGSIVIHPTEALVSIDVNSGKST 308 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E +E TAL+T+LEAAEEIARQLRLRDL GLIVVDFIDM + KN +VEK +++ K D Sbjct: 309 KEASVEKTALKTDLEAAEEIARQLRLRDLGGLIVVDFIDMRDVKNRTAVEKAMRQHAKLD 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 +AR+++G IS FGL+EMSRQRI S+ + C +C G G + S ++AL LR + Sbjct: 369 KARMKIGRISQFGLMEMSRQRISPSIDYGSYLTCPHCHGKGRVPSLETMALDFLRKLRSQ 428 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 +++ ++ ++V YLLN+KR + + E R V+I + L +I Sbjct: 429 IIKEGVKSMEGMVPANVAEYLLNKKRRELNDLELRHDVTIVIRPDKGLVPGESHIHAEK 487 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 58/110 (52%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++A EE R+ +++DN +E E+ ++ +GN+Y + RVEPSLQA FVD Sbjct: 1 MTTRILVNAVDPEECRIAIVKDNNLEGFHIETAAREITRGNVYKGVIARVEPSLQAVFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHG 110 YG +RHGFL EIH DY+ S A+ + D Sbjct: 61 YGADRHGFLQKNEIHSDYFMDTHSGDTAIKNLLKPGMELLVQITKDPVDK 110 >gi|163857420|ref|YP_001631718.1| putative ribonuclease [Bordetella petrii DSM 12804] gi|163261148|emb|CAP43450.1| putative ribonuclease [Bordetella petrii] Length = 526 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 116/410 (28%), Positives = 208/410 (50%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P+ Sbjct: 114 ENRSERSQGLTPTAIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 173 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + + + G+I+RT T E+ D EYL +LW V Sbjct: 174 IGISQKIDSEAERTQLRERLQALIPEDEKGGLIVRTQAEGATDEELSADLEYLRKLWSRV 233 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A + AP L++++ L +R +RD+ + I V ++ ++ PS A Sbjct: 234 QAAARSQPAPALLHQDLTLAQRVLRDMVGPNTGVIQVDSRTTTTALTEWARVYTPSVADR 293 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 ++ Y P+F + ++ ++ V L S GY+II+QTEAL ++DVN+G Sbjct: 294 IQHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 353 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G++++DFIDME+ ++ +V +LK++L +DR R+ Sbjct: 354 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDPEHRETVLAELKKALARDRTRMT 413 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+ G +R+ +V ILR + Q+ Sbjct: 414 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCEARGTVRTARTVCYEILREILREARQFN 473 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + VV L ++ + G +++ + + + + I Sbjct: 474 PREFRILASQSVVDLFLEEESQHLAMLGDFVGKPVSLEVETAYSQEQYDI 523 >gi|225010185|ref|ZP_03700657.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C] gi|225005664|gb|EEG43614.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C] Length = 516 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 155/566 (27%), Positives = 257/566 (45%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + LI S+ +L+D ++ EL E ++ K G+I++AKV + L AAFV+ Sbjct: 1 MVKRELIIRSNSTTVDFALLKDGKLTELSKEEDNNKFSVGDIFIAKVRKPISGLNAAFVN 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P + + D SL Sbjct: 61 VGYEKDAFLHYHDLGPQ----------------------LSTMLKFIKRASTGKMRDFSL 98 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + VA + ++ I AN + Sbjct: 99 KNVAFEPDIDKDGTINDAIKANQS-----------------------------------I 123 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +++ LS+AGRY V++P + + ++S+KI + ++ LK + + ++ Sbjct: 124 LVQIVKEPISTKGPRISSELSIAGRYLVMVPFSDR-VSVSQKIESKEEKDRLKRLVKSIK 182 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G GVI+RT + E+ RD + L+ W + + + P V E N +R Sbjct: 183 PK-GFGVIIRTVAEGKKVAELDRDLQNLLNKWTVMCKKLHKAPHPSKVLVELNRASSILR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ S I V E Y + KD+++ + P IV+ YE PIF + GIE Q+ + Sbjct: 242 DVFNDSFSGIHVDDETLYTQVKDYVQEIAPEKESIVKLYEATEPIFEKFGIERQIKTSFG 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 T+ Y++I TEAL IDVNSG RS + EDTAL NL AA EIARQLRLRD+ Sbjct: 302 KTATMSKGAYLVIEHTEALHVIDVNSGNRSNKAKNQEDTALDVNLSAATEIARQLRLRDM 361 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM + + + + L E +K+DRA+ ++ S FGL++++RQR+R + Sbjct: 362 GGIIVVDFIDMAKGDHRKKLFDHLSEEMKEDRAKHKILPPSKFGLIQITRQRVRPEMNIK 421 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRAT 538 TT+ G + + + I +++ + H + ++ H + YL + Sbjct: 422 TTEPLPTITGK-EVEAPIVLLDKITADLQKLFVGPSKDHKVTLNVHPFIAAYLSQGIPSI 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + Sbjct: 481 RQKWFLEYKKWVKIQPRDAYQYLEYR 506 >gi|187478718|ref|YP_786742.1| ribonuclease G [Bordetella avium 197N] gi|115423304|emb|CAJ49838.1| ribonuclease G [Bordetella avium 197N] Length = 487 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 206/410 (50%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P+ Sbjct: 75 ENRQERSQGQNPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + + + G I+RT E+ D EYL +LW +V Sbjct: 135 IGISQKIDSEAERTQLRERLQALVPGEEKGGFIVRTQAEGAADEELSADLEYLRKLWASV 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A + AP L++++ L +R +RD+ I V +++ K+ PS Sbjct: 195 QMAARSQPAPTLLHQDLTLAQRVLRDMVGPYTGVIQVDSRSTTAALQEWGKVYTPSVVPR 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 +R Y P+F + ++ ++ V L S GY+I++QTEAL ++DVN+G Sbjct: 255 IRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNF 314 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G++++DFIDME+ + +V +LK++L +DR R+ Sbjct: 315 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDSGHRDTVLAELKKALSRDRTRMT 374 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+ G +R+ +V ILR + Q+ Sbjct: 375 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCQARGNVRTARTVCYEILREILREARQFN 434 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V VV L ++ + G I++ + + + + I Sbjct: 435 PKEFRVLAAQSVVDLFLEEESQHLAMLGDFVGKPISLEVEGSYSQEQYDI 484 >gi|297748936|gb|ADI51482.1| Ribonuclease E [Chlamydia trachomatis D-EC] gi|297749816|gb|ADI52494.1| Ribonuclease E [Chlamydia trachomatis D-LC] Length = 525 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 160/566 (28%), Positives = 277/566 (48%), Gaps = 68/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 14 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 63 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I + + DV + Sbjct: 64 ----RN-------IQSAFINI-------------DERENGFIHISDVLENSKKFEQMFDI 99 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + A A E ++ I+E++K + Sbjct: 100 DSDADHAEPQPEETSKAP-------------------------------IEELLKLDSPV 128 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P+ R LK++ R E Sbjct: 129 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFE 187 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA S + + + + L+ W ++ E + P L+YEE +++K+A+ Sbjct: 188 MPQNMGLICRTASISASTETLINEAQDLLNTWQSILEKFYSPDHPSLLYEETDILKKAVM 247 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K +++ Y++ K + P + Y D P+F R IE ++D + Sbjct: 248 TCVDKSYKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATK 307 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 308 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNI 367 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 368 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 427 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-T 538 C YC G I++ S+ + I R +++ + N+ + H ++ Y+ ++ Sbjct: 428 LFTTCPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVE 487 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + + + + Sbjct: 488 LIRLAKQLKAKLQINTSDSIHLNHYQ 513 >gi|94267017|ref|ZP_01290662.1| Ribonuclease E and G [delta proteobacterium MLMS-1] gi|93452291|gb|EAT02932.1| Ribonuclease E and G [delta proteobacterium MLMS-1] Length = 383 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 129/442 (29%), Positives = 210/442 (47%), Gaps = 59/442 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+A+ E R+ +L + E E +K + GNIY KV RV P +QAAF+D Sbjct: 1 MSTELLINAT-PYEIRIALLEHGNLAEFHLEHPTEKGLVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R GFL Sbjct: 60 VGLERTGFLYV------------------------------------------------- 70 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + S E E+ A + S +G + I +++ Q + Sbjct: 71 ---DDVLVTSHEVEKRLDRCAKGEGSSPCCGDEGEML----LRRVPGQNIDDLLSEGQEI 123 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KE G+KGA +T +++L R V MP T ISRKI + R+ L++ L Sbjct: 124 LVQVCKEPLGSKGARLTCHITLPCRNLVFMPMTEHIG-ISRKIEDEDVRRMLRQDIESLR 182 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RT + E++ D E+L+ W +++ A + P LVYE+ ++ R +R Sbjct: 183 PS-GTGFIVRTVAELASNEELEADMEFLLHTWSEIQDRAAGAPVPSLVYEDLDITLRVVR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ ++ E++V Y +F++ P V PIF GI+ +++ + Sbjct: 242 DVFSPEVDEVVVDEPATYERVLEFVETFAPHLKGRVCLASGEPPIFESFGIDFEVNRALE 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L GY++I TEAL IDVN+GR ++ +E+T +TN+EAA+EIA QLRLR++ Sbjct: 302 RKIWLRCGGYIVIEPTEALTVIDVNTGRYVGKNGLEETIFKTNMEAAKEIAYQLRLRNIG 361 Query: 421 GLIVVDFIDMEEKKNNRSVEKK 442 G+I+VDFIDME++++ ++ Sbjct: 362 GIIIVDFIDMEDEEHREAIFNT 383 >gi|317407637|gb|EFV87576.1| ribonuclease G [Achromobacter xylosoxidans C54] Length = 493 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 116/410 (28%), Positives = 207/410 (50%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + I++++ Q ++VQ+VK+ G KGA ++T +S+AGR V +P+ Sbjct: 81 ENRGERSQGLTPTPIEKLLFEGQTIMVQVVKDPLGTKGARLSTQISMAGRMLVYLPHDPH 140 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + + + G I+RT E+ D EYL +LW +V Sbjct: 141 IGISQKIDSESERIQLRERLQALMPSEEKGGFIVRTQAEGANDEELAADLEYLRKLWTSV 200 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A AP L++++ L +R +RD+ I+V ++ ++ PS Sbjct: 201 QAAARTQPAPALLHQDLTLAQRVLRDMVGPSTGAILVDSRTTTAAMLEWARVYTPSVVDR 260 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 ++ Y P+F + ++ ++ V L S GY+II+QTEAL ++DVN+G Sbjct: 261 IQHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 320 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G++++DFIDMEE+++ +V +LK++L +DR R+ Sbjct: 321 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEEQEHRETVLAELKKALARDRTRMT 380 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+ G +R+ +V ILR + Q+ Sbjct: 381 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCESRGNVRTPRTVCYEILREILREARQFN 440 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + DVV L ++ + G +++ + + + + I Sbjct: 441 PKEFRILASQDVVDLFLEEESQHLAMLGDFVGKRVSLEVESTYSQEKYDI 490 >gi|297570188|ref|YP_003691532.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2] gi|296926103|gb|ADH86913.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2] Length = 701 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 177/488 (36%), Positives = 275/488 (56%), Gaps = 10/488 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + E+ + G++ S+E A + +S Sbjct: 217 PEECRLALVENGKVEGFYIESTSGAQCKGNIYKGRITSVEANLQAAFVDIGLPKNGFLSF 276 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + E E P + IQ+++K + +LV++VK+ GNKG ++TTYLS Sbjct: 277 SEIHPEYYE------KEVDPDTNWKSLKIQDMVKKGREVLVEVVKDATGNKGPSLTTYLS 330 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GR VLMP S ISRKI + R+ L+E+ GL +P G+G I+RTA TK + Sbjct: 331 LPGRCLVLMPG-SDSAGISRKIDDEEQRRKLREMVEGLNIPEGIGYIIRTASQEITKTAL 389 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +L+ LW +++ ++ AP L+Y+E N+I R +RD Y DI EI+V E+ + Sbjct: 390 SQDMRFLLNLWTEIKKKGQSTPAPALLYKEQNIIARFLRDHYTTDIKEILVDNEEAAEQV 449 Query: 322 KDFMKL--LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 K+F++L V+ ++ PIF + +E Q++ + Q V L S G ++IN TEAL Sbjct: 450 KNFLQLLPAAQRKKTTVKLHQGSQPIFHQYHVEKQIEQMFQPTVPLSSGGSIVINPTEAL 509 Query: 380 VSIDVNSGR-STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 V+IDVNSGR ++++ E++ N+EAAEE+ARQLR+RDL GLIVVDFIDM N R Sbjct: 510 VAIDVNSGRTASKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAANTRE 569 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 VEKK++E +KKD+A+V IS FGL+++SRQ++ + + S+ K C +C+G G IRS + Sbjct: 570 VEKKVRECMKKDKAKVDFSRISKFGLMQISRQKMAAPIQSSSYKTCPHCEGRGMIRSVEN 629 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + LS LR ++ L Q A+ ++ DV Y+ N+KR ++E E + I + ++ Sbjct: 630 MVLSYLRQIQTGLHQRKANKVLCRLPLDVAQYIFNKKREDLLELEKDYQAQIIIEADPQM 689 Query: 559 ADKLFYIE 566 IE Sbjct: 690 LAAENRIE 697 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 37/76 (48%), Positives = 50/76 (65%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 K+LI+ EE R+ ++ + +VE ES Q KGNIY ++T VE +LQAAFVD G Sbjct: 209 KLLINTDEPEECRLALVENGKVEGFYIESTSGAQCKGNIYKGRITSVEANLQAAFVDIGL 268 Query: 64 NRHGFLPFLEIHPDYY 79 ++GFL F EIHP+YY Sbjct: 269 PKNGFLSFSEIHPEYY 284 >gi|328952216|ref|YP_004369550.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109] gi|328452540|gb|AEB08369.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109] Length = 515 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 186/510 (36%), Positives = 287/510 (56%), Gaps = 10/510 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ + + EA + + G++ ++E A E + + Sbjct: 8 PEEFRVAIVEDGKLEEFALEAASREQLKGNIYKGVISNIEPSLQAAFVHYGAERQGFLPI 67 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + + IQEV+K Q LLVQ++KEE +KGA +TTY+S Sbjct: 68 SEIHPEY---------FQPEAPQRSRPKIQEVLKKGQELLVQVIKEEIASKGAYLTTYIS 118 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GR+ VL+P + ISRKI R+ LK + + + GMG+I+RTA + K E+ Sbjct: 119 LPGRFLVLLPGQEQIG-ISRKIEEEARRQELKALIKEFNLTHGMGLIVRTASEAAKKREL 177 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D++YL +W +++ A S AP L+Y+E +L+ R IRD Y DI+EI++ + + + Sbjct: 178 QKDYQYLNNIWQEIKKNAGQSPAPALIYKELDLVIRTIRDYYTADINEILIDDVETFTQI 237 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F K P + +++ Y++ PIF + IE QL+ L+ +V L S G V+IN TEALV+ Sbjct: 238 KNFFKAFSPKHTNVLKLYKEKRPIFSKYQIEEQLERLYDNQVPLKSGGGVVINPTEALVA 297 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSGR +E+TA +TNLEAA+EIARQLRLRDL GLIV+DFIDM+++K+ + VEK Sbjct: 298 IDVNSGRCISPKEVEETAFKTNLEAAQEIARQLRLRDLGGLIVIDFIDMKDRKHRKEVEK 357 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +LK +LKK++ARV VG IS FGLLE+SRQR+R +V S C +C+G G I+S + L Sbjct: 358 ELKAALKKEKARVTVGQISKFGLLELSRQRLRPAVQTSLYITCPHCQGRGLIKSVEASGL 417 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S++R + + + +V YLLN+KR +V E +F + + + LA Sbjct: 418 SLIRKICHEAAKNDIQEVRALLPQEVTNYLLNKKRKELVSLEEKFQLRLFIASKEGLAWT 477 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 +E T + + D Sbjct: 478 ESRLEFIKRQIDQEKTKAALEGLIEERLKD 507 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 2/105 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+AS EE RV ++ D ++EE E+ ++Q+KGNIY ++ +EPSLQAAFV YG Sbjct: 1 MLINASDPEEFRVAIVEDGKLEEFALEAASREQLKGNIYKGVISNIEPSLQAAFVHYGAE 60 Query: 65 RHGFLPFLEIHPDYYQI--PFSDRQALLKESNIAQTDSEAVADDV 107 R GFLP EIHP+Y+Q P R + + Q V + Sbjct: 61 RQGFLPISEIHPEYFQPEAPQRSRPKIQEVLKKGQELLVQVIKEE 105 >gi|224131900|ref|XP_002321206.1| predicted protein [Populus trichocarpa] gi|222861979|gb|EEE99521.1| predicted protein [Populus trichocarpa] Length = 923 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 151/668 (22%), Positives = 283/668 (42%), Gaps = 63/668 (9%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI +S R+ VL D ++ EL E + ++Y+ VT++ P + AFV+ G + Sbjct: 261 ILISSSICTMQRIAVLEDEKLVELLLEPVKNTVLCDSVYIGVVTKLVPHMGGAFVNIGSS 320 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLK---------ESNIAQTDSEAVADDVTHGDV--T 113 R + + + PF R + E + A ++E + DV D Sbjct: 321 RPSLMDIKQNREPFIFPPFCQRTKKGEVNGSVLKAFEEHPAAHENEHTSHDVEVIDDVSE 380 Query: 114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC---- 169 L + E +++ +S + V+ G D + + Sbjct: 381 FVFHSDLAPFLHDDHEEHEVDDDFDVSEVKENVNGSIVDYGEVDADFEQFLDGREHHLEG 440 Query: 170 ---------------------IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 ++ ++VQ+VKE G KG VT Y L R+ + Sbjct: 441 DTASLSHQDIKDAKHTLTSENKWSQVRKGTKVIVQVVKEGLGTKGPTVTAYPKLRSRFWI 500 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 L+ + +S+K++ + ++ P G G+ +RT A + E+++D E L Sbjct: 501 LITRCDRIG-VSKKVSGVERTR--LKVIAKTLQPPGFGLTVRTVAAGHSFEELQKDLEGL 557 Query: 269 MRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 + W ++ E A ++ P +++ ++D + + + +++V + Y Sbjct: 558 LSTWKSIMEHAKSAALAEDEGVEGAIPVVLHRAMGQTLSVVQDYFSEKVRKMMVDSPRTY 617 Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378 E ++++ + P V Y+ P+F IE +++++ V L S G ++I QTEA Sbjct: 618 HEVTNYLQEIAPDLCGRVELYDKRTPLFDEFKIEEEINNILSKRVPLSSGGSLVIEQTEA 677 Query: 379 LVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 LVSIDVN G + E L NL AA+ IAR+LRLRD+ G+IVVDFIDM ++ N Sbjct: 678 LVSIDVNGGHVMLRQRTSQEKAILDVNLAAAKRIARELRLRDIGGIIVVDFIDMADESNK 737 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 R V + +K ++++DR+ V+V +SN GL+E++R+R+R SV ++ CT C G + + Sbjct: 738 RLVYEAVKRAVERDRSTVKVSELSNHGLMEITRKRVRPSVTFMISEPCTCCHATGRVEAL 797 Query: 497 SSVALSILRS-------VEEYLLQYTAH---NIIVHTHSDVVLYLLNQKRATIVEYEARF 546 + I + +++ I+ + YL + KR + + Sbjct: 798 ETSFSKIEQEICRSLATMDQKADHENPKTWPRFILRVDHHMCNYLTSGKRTRLAVLSSSL 857 Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 V I + + F +++ N + + S + + L+P+ Sbjct: 858 KVWILLKVARGFTRGAFEVKQF--TDDKTNKDQQQVAISVLRQAEARAKKSGGKVTLVPV 915 Query: 607 PKSESLED 614 K ++ Sbjct: 916 KKGKAGRK 923 >gi|148263327|ref|YP_001230033.1| ribonuclease [Geobacter uraniireducens Rf4] gi|146396827|gb|ABQ25460.1| RNAse E [Geobacter uraniireducens Rf4] Length = 792 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 199/545 (36%), Positives = 298/545 (54%), Gaps = 5/545 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ ++ + D E ++ T G+V +E A ++ + Sbjct: 12 PEEARVAIVEDGHLVELDIEIAGNEQTRGNVYKGVVVRVEPGLQAAFVDIGLKKLGFLQM 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 N + + + R+ IQE+++ Q L+VQ+ K ER NKGAA+TTY+S Sbjct: 72 GEIHPENWQ----WRDDVPEDQRHRRPRIQEILRRGQELIVQVEKGERDNKGAALTTYIS 127 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP S ISRK+ + +RK LKE+ GLE+P G+G I+RT RTK E+ Sbjct: 128 LPGRYMVLMPG-SDSAGISRKVESESERKKLKELVAGLEIPEGIGYIMRTEAVGRTKTEL 186 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +YL++L+ ++RE L+Y+E +L+ R IRD + DI E++V ++ Y++A Sbjct: 187 TKDLQYLVKLYSSIREKGAEIKGAGLIYQESDLVIRTIRDYFNADIDEVLVDSKEVYKQA 246 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F K MP ++V+ +++ PIF R +E Q+D +++ +V L S G + I TEALVS Sbjct: 247 RAFFKETMPKCEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVS 306 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+ST E +EDTA +TNLEAA E ARQLRLRDL GLIV+DFIDM E+K+N VEK Sbjct: 307 IDVNSGKSTGERGVEDTAYKTNLEAAAEAARQLRLRDLGGLIVIDFIDMRERKHNAEVEK 366 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK +LK D+ARV VG IS FGLLEMSRQRI+ ++ +++T C +C+G G ++S ++AL Sbjct: 367 TLKTALKGDKARVTVGRISQFGLLEMSRQRIKQTINQASTLECPHCEGRGKVKSVEAMAL 426 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S LR V + T + +V YLLN+K+ + + E + + + V Sbjct: 427 SFLRKVHAAAAKGTVAEVRGGLPLEVAYYLLNRKKRELAQIETDYDIDVTVKGKPSFLLN 486 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +E + LV V + K + Sbjct: 487 QMEVELTKREKPLVEEHLPVKGAPAEEAEAHEPAAAVAGAVPGEEIKGKKKRRRGKKKPH 546 Query: 622 EESTG 626 E Sbjct: 547 VEGEA 551 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 41/80 (51%), Positives = 52/80 (65%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLI+A H EE RV ++ D + ELD E +Q +GN+Y V RVEP LQAAFVD Sbjct: 1 MSKKMLINAMHPEEARVAIVEDGHLVELDIEIAGNEQTRGNVYKGVVVRVEPGLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQ 80 G + GFL EIHP+ +Q Sbjct: 61 IGLKKLGFLQMGEIHPENWQ 80 >gi|189219731|ref|YP_001940372.1| Ribonuclease G and E [Methylacidiphilum infernorum V4] gi|189186589|gb|ACD83774.1| Ribonuclease G and E [Methylacidiphilum infernorum V4] Length = 554 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 150/496 (30%), Positives = 257/496 (51%), Gaps = 5/496 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII-- 139 P R ALL E + + E + ++ +++++ + + + Sbjct: 58 PLERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIGIGKNAFLHF 117 Query: 140 -SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 A + ++ + R I + ++VQ+ K G KG VTT Sbjct: 118 WDAIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPIGTKGPRVTT 177 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 ++LAGRY VLMP + ISRKI +P +R L++I L +P GMGVI+RT G + Sbjct: 178 NITLAGRYLVLMPYNEQFG-ISRKIEDPKERARLRKILNELRIPEGMGVIIRTVGEGQKS 236 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 RD L++ W+ + + AP L+Y E +LI+R +RD D+ +I + E Sbjct: 237 RYFVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEKIYIDDENEV 296 Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378 + KD + + + + Y +P P+F + IE Q+D+ +V LPS GY+II++TEA Sbjct: 297 KRIKDLVAQISKRSQKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSGGYIIIDETEA 356 Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 LV+IDVN+G++ ++ L+TN+EAA EI+RQLRLR++ GL+V+DFIDM+ +++ Sbjct: 357 LVAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFIDMKSRRDQHL 416 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 V +KLKE ++KDRA++ + IS+FGL+EM+RQR++ S+ S C +C G G ++S + Sbjct: 417 VFEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCHGRGMVKSPET 476 Query: 499 VALSILRSVEEYLL-QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 +++ I R++ + + V + V+ L ++ +V+ E R + Sbjct: 477 MSIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQGKLYFRTDPR 536 Query: 558 LADKLFYIEKGSPVQA 573 + + F I + Sbjct: 537 INYEEFKIVNALTGED 552 >gi|326795040|ref|YP_004312860.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1] gi|326545804|gb|ADZ91024.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1] Length = 484 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 122/565 (21%), Positives = 225/565 (39%), Gaps = 84/565 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +LI+ + E RV ++ + ++E+ E +K I GNIY KV RV P +QAAFVD Sbjct: 1 MSEDVLINVT-PMEIRVALVENGVLQEVYIERSSRKGIVGNIYQGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R F+ EI +DR A+ S+ + D + G + Sbjct: 60 IGLERAAFIHVSEI---------ADRDAV--------NPSDQIGDYLREGQSLVVQVTKD 102 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + S ++V + E ++ + L Sbjct: 103 PISTKGARLTTHLSIPSRYLVYMPDQAHVGVSQRIEDESERERL-------------KSL 149 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + + + G + T AG + + + L Sbjct: 150 VSKALTDADETSGYILRTAAEKAG---------------------EEEILSDIKFLTRLW 188 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + A + I D +R ++ +L I+ Sbjct: 189 QSVKKRMKSAKAPS-----VIYEDLPLHLRTMRDLI----------------SLTTEKIK 227 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 ++ +++ + E + ++ + + Sbjct: 228 IDSKENFAKLRSFADDFIPELSNHIEYYPGERPIFDLYSVEDE-----------IQRALD 276 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V+L S GY+++ QTE++ +IDVN+G +E+T +TNLEAA I RQLRLR+L Sbjct: 277 RKVSLKSGGYLLVEQTESMTTIDVNTGAYVGTRNLEETIYKTNLEAATAIGRQLRLRNLG 336 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++++ R V + L++ L+ D A+ ++ +S GL+EM+R+R R S+ + Sbjct: 337 GIIIIDFIDMEDEEHKRQVLRMLEKILEVDHAKTKITGVSELGLVEMTRKRTRESLGQVL 396 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C+G+G +++ +V + R + Y + V S VV L+++ + Sbjct: 397 CEPCRACRGSGLVKTPETVCYEVFREILRADRAYNSQTYTVLASSSVVERFLDEESVAVA 456 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E EA G +I + + + Sbjct: 457 ELEAFIGKTIRFQVDPVYTQDQYDV 481 >gi|329943150|ref|ZP_08291924.1| ribonuclease, Rne/Rng family domain protein [Chlamydophila psittaci Cal10] gi|332287732|ref|YP_004422633.1| ribonuclease [Chlamydophila psittaci 6BC] gi|325507347|gb|ADZ18985.1| ribonuclease [Chlamydophila psittaci 6BC] gi|328814697|gb|EGF84687.1| ribonuclease, Rne/Rng family domain protein [Chlamydophila psittaci Cal10] gi|328914986|gb|AEB55819.1| ribonuclease G [Chlamydophila psittaci 6BC] Length = 510 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 164/566 (28%), Positives = 286/566 (50%), Gaps = 70/566 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N +L++ +E R L++ ++ +L E + +Q+KGNIY +VT + Sbjct: 1 MENDILLNI-ESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNIL--------- 50 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 R+ I + I D+ +G + I + Sbjct: 51 ----RN-------IQSAFINI-----------------------DERENGFIHISDV--- 73 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + E + + DV++ ++ K +P I+E++K + Sbjct: 74 --------LENSKKFEQMFDMDFDVLNKEDNEKPEAP------------IEELLKLDSPV 113 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE G KGA +T+ +S+ GRY VL+PN+ +SRKI +P R LK++ R E Sbjct: 114 LVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFE 172 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +P MG+I RTA + + + L+ W + E ++ P L+YEE +++K+A+ Sbjct: 173 MPQDMGLICRTASVLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVI 232 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K+ +++ Y++ K +K P+ + + Y D P+F R IE ++D + Sbjct: 233 TCIDKNYKRLLIDDYSTYQKCKRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATK 292 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDL 419 ++ L S GY+ ++TEA+ +IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ Sbjct: 293 RKIWLSSGGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNV 352 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 GL+++DFIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ Sbjct: 353 GGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQT 412 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-KRAT 538 C YC G I++ SV + I R +++ + ++ + H ++ ++ + Sbjct: 413 LFTTCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDE 472 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + L + Sbjct: 473 LIRLAKHLKAKLQINTSDSLHLNHYQ 498 >gi|89900867|ref|YP_523338.1| ribonuclease [Rhodoferax ferrireducens T118] gi|89345604|gb|ABD69807.1| RNAse G [Rhodoferax ferrireducens T118] Length = 491 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 126/422 (29%), Positives = 215/422 (50%), Gaps = 2/422 (0%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V G P + + + Q I++ + Q+LLVQ++K+ G KGA ++T +S+A Sbjct: 69 HVADVWHRQPEGEPPSMVRNTQPQIPIEKQVFEGQVLLVQVIKDPIGTKGARLSTQISIA 128 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 GR V +P + N D L+ + L G G ILRT G + +E+ Sbjct: 129 GRMLVFLPQDDHVGVSQKIPQNQRDE--LRTRLQQLVGTEGGGFILRTNGEDASDLELSD 186 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 D YL + W ++ ++ L++++ NL++R +RDL C++ I V + + K Sbjct: 187 DIGYLRKAWARIKGASVRLPPLSLLHQDLNLLQRVLRDLVCENTQTIKVDSREQFEALKA 246 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 F MP+ A ++ Y+ PIF I+ ++ V L S GY+I++QTEAL ++D Sbjct: 247 FGLEFMPAAAEKLQHYKGERPIFDLYAIDEEIAKALGRRVDLKSGGYLIVDQTEALTTVD 306 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VN+G +DT +TNLEAA+ IARQLRLR+L G+I+VDFIDM + + +V ++ Sbjct: 307 VNTGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVREDHREAVLAEI 366 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 ++ L +DR + G S GL+EM+R+R R S+ + C C+G G +++ +VA +I Sbjct: 367 RKQLSRDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCEGKGIVKTARTVAYNI 426 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R + Q+ V V+ L+++ + G +++ + + + Sbjct: 427 FREILREARQFNPREFRVIASPKVIELFLDEESQHLAGLSEFIGKPVSLQSESAMGQEQY 486 Query: 564 YI 565 I Sbjct: 487 DI 488 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV ++ + ++EL E ++ + GN+YL KV RV P +Q+AF+D Sbjct: 1 MQEDILINWS-PQETRVAIVENGALQELLVERTLERGLVGNVYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 IGLERAAFLHVADV 73 >gi|293604463|ref|ZP_06686869.1| cytoplasmic axial filament protein [Achromobacter piechaudii ATCC 43553] gi|292817142|gb|EFF76217.1| cytoplasmic axial filament protein [Achromobacter piechaudii ATCC 43553] Length = 493 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 208/410 (50%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + I++++ Q ++VQ+VK+ G KGA ++T +S+AGR V +P+ Sbjct: 81 ENRGERSQGLTPTPIEKLLFEGQTIMVQVVKDPLGTKGARLSTQISMAGRMLVYLPHDPH 140 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + + + G I+RT E+ D EYL +LW +V Sbjct: 141 IGISQKIDSESERIQLRERLQALMPAEEKGGFIVRTQAEGANDDELTADLEYLRKLWTSV 200 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A AP L++++ L +R +RD+ I I+V ++ ++ PS Sbjct: 201 QAAARTQPAPALLHQDLTLAQRVLRDMVGPSIGAILVDSRTTSAAMLEWARIYTPSVVDR 260 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 ++ Y P+F + ++ ++ V L S GY+II+QTEAL ++DVN+G Sbjct: 261 IKHYSGDRPLFDTANVDDEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 320 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G++++DFIDMEE+++ +V +LK++L +DR R+ Sbjct: 321 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEEQEHRDTVLAELKKALSRDRTRMT 380 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+ G +R+ +V ILR + Q+ Sbjct: 381 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCESRGNVRTPRTVCYEILREILREARQFN 440 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + DVV L ++ + G +++ + + + + I Sbjct: 441 PKEFRILASQDVVDLFLEEESQHLAMLGDFVGKRVSLEVESTYSQEKYDI 490 >gi|153808080|ref|ZP_01960748.1| hypothetical protein BACCAC_02366 [Bacteroides caccae ATCC 43185] gi|149128983|gb|EDM20199.1| hypothetical protein BACCAC_02366 [Bacteroides caccae ATCC 43185] Length = 484 Score = 278 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 142/538 (26%), Positives = 248/538 (46%), Gaps = 61/538 (11%) Query: 43 YLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEA 102 YL ++ ++ P L A FVD G + FL +L++ P + + + +K++ + + Sbjct: 2 YLGRIKKLMPGLNACFVDVGYEKDAFLHYLDLGPQF-----NSLEKFIKQTLSDKKKLTS 56 Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162 ++ D+ Sbjct: 57 ISKATLLPDLD------------------------------------------------- 67 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 + + +K Q ++VQIVKE KG +T+ +S AGRY VL+P K + Sbjct: 68 ---KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKI 124 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 ++ + + P GVI+RT + E+ + L++ W++ + Sbjct: 125 KSSEERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELRVLVKHWEDAMAKVQKA 182 Query: 283 -VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 P L+YEE + +RDL+ I V+ E Y E KD++ L+ P A IV+ Y+ Sbjct: 183 TKYPTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVSLIAPDRANIVKLYKG 242 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TAL 400 PI+ GI Q+ S V+ S Y+II TEAL +DVNSG T+ ++ AL Sbjct: 243 QLPIYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNAL 302 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 + NL AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++ +++KDRAR + +S Sbjct: 303 EVNLGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLS 362 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 FGL++++RQR+R ++ +TT++C C G G I+S ++ ++ + + Sbjct: 363 KFGLMQITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFS 422 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +H H V Y+ + +++ ++G I V+ +LA + + + Sbjct: 423 LHVHPYVAAYINQGLVSLKRKWQMKYGFGIKVIPSQKLAFLQYVFYDTHGEEIDMKEE 480 >gi|315633905|ref|ZP_07889194.1| ribonuclease G [Aggregatibacter segnis ATCC 33393] gi|315477155|gb|EFU67898.1| ribonuclease G [Aggregatibacter segnis ATCC 33393] Length = 491 Score = 278 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 117/414 (28%), Positives = 201/414 (48%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 E+ +K I +++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVEESEQKQFVVKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA T++++++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERNR--LKELTLPLCDELGGFIIRTAAEGATELDLQQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD + I + + E K F + +P+ Sbjct: 195 RKVLERRAKYPTRSMLYGELALTQRILRDFIGGKLDRIHIDSRLCFNEVKQFTEEFIPNL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P+F +E + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 TDKLILYTGNQPLFDVYSVEKGIHHALDRRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ +++ V + L+++L +D Sbjct: 315 RNLEETIFNTNIEATKTIAQQLQLRNLGGMIIIDFIDMQSEEHRNRVLESLQDALSRDPV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C+G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCCECPTCQGRGRVKTVETVCYEIMREIIRVHH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565 + + +V+ V YL+N++ + E E G I V + F + Sbjct: 435 LFASEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQVKTEPFYTQEQFDV 488 >gi|310823547|ref|YP_003955905.1| Ribonuclease, Rne/Rng family [Stigmatella aurantiaca DW4/3-1] gi|309396619|gb|ADO74078.1| Ribonuclease, Rne/Rng family [Stigmatella aurantiaca DW4/3-1] Length = 853 Score = 278 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 153/584 (26%), Positives = 257/584 (44%), Gaps = 7/584 (1%) Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186 E+ + D + +D K ++ I++++K Q ++VQI K Sbjct: 248 EAREPRHREKDRDGRDKDKSRRPREEHSRREKDEKSKVRKSSRIEDLLKVGQEVVVQISK 307 Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246 + G KGA +T+++S+ GR+ V MP ISR+I+N +RK L+EI L P G G Sbjct: 308 DPIGTKGARLTSHISIPGRHLVFMPTVDHVG-ISRRISNEKERKRLREIVDRLRPP-GTG 365 Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 I+RT + + +++ D +L+ +W+ V P L++ + +LI RA RDL+ D Sbjct: 366 FIVRTVAENVPQEKLETDIRFLIEVWNQVVRRNEKRGGPGLLHPDLDLILRATRDLFAHD 425 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 + +++V + Y F+ P V +E P+F GIE ++ Q +V L Sbjct: 426 VEKLVVDDREEYERILAFVTAQDPLLKDRVVLHEGDEPVFDAYGIEQEMHRATQRKVWLK 485 Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 S GY+II+Q EAL +IDVNSGR + +E+T + N+EAA+EI QLRLR++ G+I+ D Sbjct: 486 SGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICD 545 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDME+ +N V K L+E+L +D+A+ V IS GL+EM+R+R+R S+ + C Y Sbjct: 546 FIDMEKAQNRDKVFKSLQEALGRDKAKTNVLRISELGLVEMTRKRVRESIGRVLHEDCPY 605 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G G++++ ++V I R + Y ++++ ++V L ++R + R+ Sbjct: 606 CDGRGFVKTATTVTYEIFREIRREAPGYKDSTLVINCSAEVARQLQGEERQELRHLMDRY 665 Query: 547 GVSINVVIGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---- 601 SI V + + I + D + + + Sbjct: 666 NKSIQVKAQQNYHREQYDIYGRSGMGPEHKVASSPGSGDGELAMQRRPENGGHGERYRQE 725 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 + D + + R R +N Sbjct: 726 QGRRGGGRGDRNERGDRGERGDRNERGDRGERGGGERGGGERGGGERGDRGERGERNDRG 785 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 D + N G +TPE SS Sbjct: 786 DRREGRRPDRGDRNRGGERRGDERRGGESQRPPQAAATPEPSSS 829 Score = 51.9 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 54 LQAAFVDYGGNRHGFLPFLEIH--PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGD 111 +QAAFVD G + FL ++ PD+ + F + ++ T+SEA A + GD Sbjct: 1 MQAAFVDIGLEKAAFLYVSDVVYDPDFARAQFELTEGEHEDFPEVPTESEAEAAEAAAGD 60 Query: 112 VTIPNDHSLE-EVAPIANFSQETEEESIISANNDVVSNV 149 D LE EV +A + + + V+ V Sbjct: 61 TPAGPDTELELEVQELAPGELPPPQGEPPALPPEAVATV 99 >gi|225024265|ref|ZP_03713457.1| hypothetical protein EIKCOROL_01138 [Eikenella corrodens ATCC 23834] gi|224943290|gb|EEG24499.1| hypothetical protein EIKCOROL_01138 [Eikenella corrodens ATCC 23834] Length = 532 Score = 278 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 112/406 (27%), Positives = 217/406 (53%), Gaps = 1/406 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 +K + I+ ++ Q +LVQ++K+ +KGA ++T +SLAGR+ V +P + I Sbjct: 125 QRQKPEETQRIEHMLFEGQTILVQVIKDPINSKGARLSTQISLAGRFLVYLPQDNHIG-I 183 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 S++I + +R L+ + L G I+RT+ + E++ D YL +LW ++ + Sbjct: 184 SQRIEDEEERNELRTRLKALLPENAGGYIIRTSAENARDEELQADIGYLAKLWQDILARS 243 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 S A ++YE+ L R +RD++ + +I V YR ++F + + ++ Y Sbjct: 244 KTSPAETMLYEDLPLSLRVLRDMFNSNTQKIFVDSANNYRLMQEFAQQYVQGAVERIQHY 303 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E +++ + V L GY+II TEA+ +IDVN+G ++T Sbjct: 304 QGEKPLFELYHVEQEINQSLKPRVDLNFGGYLIIESTEAMTTIDVNTGGFVGARNFDETI 363 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNL+A IAR+LRLR+L G+I+VDFIDM +++ ++V ++ ++L+ DR RV + Sbjct: 364 FKTNLDACHAIARELRLRNLGGMIIVDFIDMVSEEHRQAVLGEMAKALRFDRTRVTLNGF 423 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + C C+G GY+++ +V I R + ++ A Sbjct: 424 TSLGLVELTRKRSRENLNHILCESCPTCQGRGYLKTAQTVCYEIQREIVRESRRFDAREF 483 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ G +++++ + F I Sbjct: 484 RILAAPAVIDLFLDEESQSLALLIDFIGKPVSLMVESSYTQEQFDI 529 >gi|317051684|ref|YP_004112800.1| ribonuclease, Rne/Rng family [Desulfurispirillum indicum S5] gi|316946768|gb|ADU66244.1| ribonuclease, Rne/Rng family [Desulfurispirillum indicum S5] Length = 501 Score = 278 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 138/565 (24%), Positives = 249/565 (44%), Gaps = 67/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ + I+ E+RV + + + E+ E + + I GNIY V++V P +QAAFVD Sbjct: 1 MSTTIFINH-RSYESRVAYMENGELSEILIERKREGGIVGNIYKGVVSKVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ R+ L +A D+ GD S Sbjct: 60 IGLEKAAFLYVADLG----------REQL---------GVDAALPDLEDGDANGEKARSA 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E E +S + ++ + + + Sbjct: 101 EYPPIDEILRLGDELIVQVSKEPISTKG-------ARITSYITLPGRHLVLMPTIDHIGI 153 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E+ ++ ++ L AG + ++ +R+ + ++ + Sbjct: 154 SRRIASEQERHRLRSILNDLKPAGMGLI-----ARTVAENRQKEDFASDQSFLTNLWDV- 207 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I++ AG + + +D + LI + +R Sbjct: 208 -------IMKKAGEVKAPALLYQDLD---------------------------LILKTMR 233 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ ++++ + + E Y ++F L+P + Y P+F IEV+L+ L Sbjct: 234 DLFTREVATLYIDDEAEYLRCREFASRLLPHLFDRIELYHGKEPLFDAFNIEVELNKLSN 293 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+Q EAL +IDVN+GR + +EDT LQTNLEAA EI QLRLR++ Sbjct: 294 KKVWLKSGGYIVIDQAEALTAIDVNTGRYVGKKNLEDTILQTNLEAAREICYQLRLRNIG 353 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDMEE++N + + L+ +LKKDRA+ V +S GL+EM+R+R+R S+ Sbjct: 354 GIIIIDFIDMEEEENRLKLLQALEVNLKKDRAKTNVLPVSELGLVEMTRKRVRDSIGRVL 413 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G G+++S +V I R ++ Y + + ++DV + +++ + Sbjct: 414 YESCHYCEGRGFLKSPHTVCYDIFREIQRIAGIYKGKKLYIEAYADVADIMFSEEAEYVE 473 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 + E V + + + + I Sbjct: 474 KLEEDCCVKLVIKSNPHFHQEHYEI 498 >gi|251792072|ref|YP_003006792.1| ribonuclease G [Aggregatibacter aphrophilus NJ8700] gi|247533459|gb|ACS96705.1| ribonuclease, Rne/Rng family [Aggregatibacter aphrophilus NJ8700] Length = 491 Score = 278 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 122/414 (29%), Positives = 207/414 (50%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 E+ +K I +++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVEESEQKQFVVKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+A L G G I+RTA +++++++D ++L RLW Sbjct: 137 NSHVGVSQRIESEEERAR-LKELALPLCDELG-GFIIRTAAEGASELDLQQDADFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD + I V + E K F + +P+ Sbjct: 195 RKVLERRAKYPTRSMLYGELALTQRILRDFIGAKLDRIHVDSRLCFNEVKQFTEEFIPNL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P+F +E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 TDKLILYTGNQPLFDVYSVETAIHNALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ + + V + L+E+L D Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGMIIIDFIDMQNELHRTRVLESLEEALASDPV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C+G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHILCCECPTCEGRGRVKTVETVCYEIMREIIRVHH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ + E E G I + + F + Sbjct: 435 LFSSEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQIKTEPFYTQEQFDV 488 >gi|158522450|ref|YP_001530320.1| ribonuclease [Desulfococcus oleovorans Hxd3] gi|158511276|gb|ABW68243.1| ribonuclease, Rne/Rng family [Desulfococcus oleovorans Hxd3] Length = 499 Score = 278 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 183/396 (46%), Positives = 262/396 (66%), Gaps = 1/396 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++IK Q +LVQ+VK+ +KGAA+TT+LS+ GR+ VLMP S + +S++I + +R Sbjct: 88 IRDLIKPGQEMLVQVVKDPIMHKGAALTTFLSIPGRFCVLMPG-SVTKGVSKQIEDEEER 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 K LKEI GL VP GVILRTA K I +D YLMRLW +++ +N AP ++ Sbjct: 147 KRLKEIVSGLRVPENFGVILRTAAKGAAKTVIAKDLSYLMRLWKTIKKEGMNQKAPAAIH 206 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 +E + RAIRD DI EI++ ++E KDF+ L+ P +A+IVR Y+ PIF + Sbjct: 207 KERDFAVRAIRDYLTADIQEILIDEPAVHQEVKDFVALVSPKHAKIVRLYQGAKPIFTKH 266 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E Q++S+ + V LPS G +++ QTEALVSIDVNSG+S ++H IE+TALQTNLEAAEE Sbjct: 267 ELESQIESIFENRVQLPSGGSIVLTQTEALVSIDVNSGKSRQKHSIEETALQTNLEAAEE 326 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLRD+ GLIV+DFIDM+ +KNN +VE+ LK +K+D+AR VG IS FGLLEMSR Sbjct: 327 IARQLRLRDMGGLIVIDFIDMKPRKNNAAVERALKAHVKEDKARTDVGKISKFGLLEMSR 386 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 QR+R S+ S+ C +C G GY+ + + +++LR + L++ + + V Sbjct: 387 QRLRQSIETSSMVTCGHCGGRGYVMATEKLGINVLRRLRLESLKHRGVAVTATVPAVVAD 446 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YLLN+KR ++E EAR ++I + + I Sbjct: 447 YLLNKKRTELLELEARRDLAITITGDPAMHLGESDI 482 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 42/85 (49%), Positives = 53/85 (62%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +K+LI+A EE R+ ++DNR+ E E+ + K NIY V RVEPSLQA FVD Sbjct: 1 MTDKILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSD 85 YG RHGFL +IH DY+Q D Sbjct: 61 YGEERHGFLQKHDIHTDYFQDSKVD 85 >gi|326336369|ref|ZP_08202540.1| ribonuclease G [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691543|gb|EGD33511.1| ribonuclease G [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 513 Score = 278 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 149/566 (26%), Positives = 259/566 (45%), Gaps = 64/566 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S + +L++ R+ EL E + G+I LAK+ + L AAFV+ Sbjct: 1 MTKELII-RSGASDVDFALLKNGRLIELHKEEDSSGIAVGDIMLAKIHKPIQGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P + +KE + + ++ D D+ Sbjct: 60 VGYEKDAFLHYHDLGPQ-----LASLLKFIKEVSSGKLKDYSLKDFKQEPDIN------- 107 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + I +V+K Q + Sbjct: 108 ---------------------------------------------KNGAISDVLKAGQPI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +++ LS+AGRY VL+P + + +IS+KI N +++ L+ I + ++ Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYLVLVPFSER-ISISQKIENKTEKERLRRIVQSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G GVI+RT + ++ RD + + W + + P + E N +R Sbjct: 182 PK-GFGVIIRTVAQDKKVADLDRDLQNSFQRWVQMCKKISQGTFPSKILSEMNRTGALLR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I V E Y + +D+++ + P IV+ Y+ PIF + IE Q+ + Sbjct: 241 DMFDSSFTGIHVDNEALYNQIRDYLQEIAPEQVNIVKLYKSSVPIFEKFHIERQIKTGLG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEAL IDVNSG + + E TA + NL AA EIARQLRLRD+ Sbjct: 301 RTVSMTKGAYLVIEHTEALHVIDVNSGNHSNKAENQETTAFEVNLIAATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM +N + + L+E +K DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMSNGENRQKLFDALREEMKDDRAKHKILPPSKFGLIQITRQRVRPEINIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRAT 538 T + G + + + I ++EE + Q I ++ H + YL + Sbjct: 421 TKEENPSK--LGEVDAPIVLIEQITTTLEEIIYQSNYNGRITLNIHPFIAAYLTKGIFSI 478 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ ++ I ++ + + Sbjct: 479 RFKWFLKYQRWIRILPRDAYSYLEYR 504 >gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum seropedicae SmR1] gi|300075644|gb|ADJ65043.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 278 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 116/397 (29%), Positives = 203/397 (51%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I++++ + Q + VQ++K+ G KGA ++T +S+AGR V +P R Sbjct: 88 PIEKLLHDGQSITVQVIKDPIGTKGARLSTQISIAGRMLVYLPQDKHIGISQRIENEAER 147 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 ++ L G I+RT + +++ D EYL + W + + + AP L+ Sbjct: 148 ELLRSKVQALLPPEEKGGFIIRTMAEDASDADLQMDVEYLRKTWATIVKQGKTNPAPTLL 207 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 +++ +L +R +RD + I V + + ++F + PS + Y P+F Sbjct: 208 HQDLSLAQRVLRDFVGDHTATIQVDSRENFHMLQEFGAIYTPSVLTKLTHYRGERPLFDL 267 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 G+E +++ V L S GY+I++QTEA+ +IDVN+G +DT +TNLEAA Sbjct: 268 YGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAAH 327 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 IARQLRLR+L G+I++DFIDME ++ ++V +L ++L++DR ++ V S GL+EM+ Sbjct: 328 AIARQLRLRNLGGIIILDFIDMESTEHRQAVLAELGKALQRDRTKISVSGFSTLGLVEMT 387 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+R R S+ + C CKG G +++ +V ILR V Q+ + VV Sbjct: 388 RKRTRESLAHILCETCPACKGRGQVKTPRTVCYEILREVMREAKQFNPREFRILASQVVV 447 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L ++ + G I++ + + + + I Sbjct: 448 DMFLEEESQHLAMLGDFIGKPISLQVQSDYQQEQYDI 484 >gi|311745200|ref|ZP_07718985.1| ribonuclease G [Algoriphagus sp. PR1] gi|126577723|gb|EAZ81943.1| ribonuclease G [Algoriphagus sp. PR1] Length = 523 Score = 278 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 157/575 (27%), Positives = 257/575 (44%), Gaps = 61/575 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LID++ +R+ +L+D + EL E + G+IYL V ++ L A Sbjct: 1 MSTELLIDSAQSG-SRIALLQDKSLVELHSEGMDNQFKVGDIYLGTVRKIVNGLNA---- 55 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F+++ D + Sbjct: 56 ---------AFIDVG--------------------------------YEKDAFLHYQDLG 74 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + F++ + S N NV ++ I ++ + Sbjct: 75 PNFNSLMKFTKMVRNNNYSSYNLKGFENVPEIDKIGK------------ISSILSKNNQV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE KG ++ LSL GRY VL+P + + ++ ++ L+ Sbjct: 123 LVQVVKEPISTKGPRLSCELSLPGRYLVLVPFSDSVNVSKKIRSSDERKRLLR--LINSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 PA GVI+RT ++ E+ +D L+ W+ + L + + V E ++ +R Sbjct: 181 KPANFGVIIRTVAEGQSVTELDKDLRNLLNNWEEGMQKLLKAKSRDKVIGEMSMASSLVR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL + I V E Y + + +++ + P +IVR Y +F GIE Q+ SL Sbjct: 241 DLLNESFDAITVEEESTYDQIRSYIRSIAPEKEKIVRLYNGKAKLFENFGIEKQIKSLFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V+LP GYVII TEAL IDVNSG +S +E E TAL+TNL AA+EIARQLRLRD+ Sbjct: 301 QTVSLPQGGYVIIEHTEALHVIDVNSGNKSNQESDQESTALKTNLVAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM + +N + + + +KE LK DR++ V +S FGL++++RQR+R V Sbjct: 361 GGIIVVDFIDMRKAENKKVIYEAMKEELKMDRSKHTVLPLSKFGLMQITRQRVRPEVNIV 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + C C G G I++ VA + + +E I + H + Y + Sbjct: 421 TKETCPACNGTGKIQASILVADKLEKDLEHIATIQNVSQIHIGLHPYLHAYFTTGIISRR 480 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 V++ ++ I ++ L + + S + Sbjct: 481 VKWFFKYYKWIKLIKDSSLPVTEYRFQDESGEEIE 515 >gi|7160671|emb|CAB76425.1| endoribonuclease E [Arabidopsis thaliana] Length = 575 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 135/558 (24%), Positives = 246/558 (44%), Gaps = 59/558 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 4 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 63 Query: 65 RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112 RH F+ +I + + PF D L A + E + D + Sbjct: 64 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 120 Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145 + + E +E I Sbjct: 121 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 180 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ + K IQ ++ ++VQ+VKE G KG +T Y L R Sbjct: 181 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 238 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+ + +S+KI+ + ++ P G G+ +RT A + E+++D Sbjct: 239 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 295 Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + L+ W N+ + A ++ P L++ ++D + + +++V Sbjct: 296 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 355 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y E +++ + P V ++ P+F IE +++ + V L + G ++I Q Sbjct: 356 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 415 Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALVSIDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ Sbjct: 416 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 475 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + Sbjct: 476 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 535 Query: 494 RSQSSVALSILRSVEEYL 511 + + I + + L Sbjct: 536 EALETTFSKIEQEICRQL 553 >gi|192362515|ref|YP_001983272.1| ribonuclease, Rne/Rng family [Cellvibrio japonicus Ueda107] gi|190688680|gb|ACE86358.1| ribonuclease, Rne/Rng family [Cellvibrio japonicus Ueda107] Length = 489 Score = 277 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 126/412 (30%), Positives = 213/412 (51%), Gaps = 3/412 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 P + + I+ +++ LLVQ+ K+ KGA +TT+L+L+ RY V MPN+S Sbjct: 76 EPPEGELRRSEVPDIRSLVREGDTLLVQVAKDPISTKGARLTTHLTLSSRYLVYMPNSSH 135 Query: 216 GETISRKITNPVDRKNLKEIARGL--EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 +R P + L++I + E G I+RT + I D +L +LW Sbjct: 136 IGVSTRIEDEPERER-LRQIVERVVAEESIPGGFIVRTVAEGADEAAILADIPFLQQLWT 194 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ + P ++ + L RA+RD+ I + V +++ +DF P Sbjct: 195 DLSARLPSLGVPAELHRDMPLYLRALRDMARAPIDRVRVDSRLTWQQMQDFASKYAPQLV 254 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ Y P+ G+E +L +T V L S GY+II QTEA+ ++DVN+G Sbjct: 255 DLIELYSGERPLLELYGVEEELRRALETRVPLKSNGYLIIEQTEAMTTVDVNTGAFVGHR 314 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 +E+T +TNLEAA IARQLRLR+L G+I++DFIDM++ ++ R V + L+++L+KD A+ Sbjct: 315 NLEETIFKTNLEAATAIARQLRLRNLGGIIILDFIDMKDPEHQRQVLRTLEKALEKDLAK 374 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 ++ +S GL+EM+R+R R S+ + + C C+G G ++S +V I R V Sbjct: 375 TRITGVSELGLVEMARKRTRESLGQLLCEPCPVCQGRGQVKSAETVCYEIFREVLRMARA 434 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V VV LL+++ + + + EA +I + + + I Sbjct: 435 YDNDKFLVLASQVVVDRLLDEEASYVADLEAFIQRTIEFRVEALFHQEQYDI 486 >gi|311105286|ref|YP_003978139.1| ribonuclease G [Achromobacter xylosoxidans A8] gi|310759975|gb|ADP15424.1| ribonuclease G [Achromobacter xylosoxidans A8] Length = 493 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 115/410 (28%), Positives = 206/410 (50%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + I++++ Q ++VQ+VK+ G KGA ++T +S+AGR V +P+ Sbjct: 81 ENRGERSQGLTPTPIEKLLFEGQTIMVQVVKDPLGTKGARLSTQISMAGRMLVYLPHDPH 140 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + + G I+RT E+ D EYL +LW +V Sbjct: 141 IGISQKIDDESERIQLRERLQALMPAEEKGGFIVRTQAEGANDEELTADLEYLRKLWTSV 200 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A AP L++++ L +R +RD+ + I+V ++ ++ PS Sbjct: 201 QAAARTQPAPALLHQDLTLAQRVLRDMVGPNTGAILVDSRTTSAAMLEWARVYTPSVVDR 260 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 ++ Y P+F + ++ ++ V L S GY+II+QTEAL ++DVN+G Sbjct: 261 IQHYSGERPLFDTANVDDEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 320 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G++++DFIDMEE+++ +V +LK++L +DR R+ Sbjct: 321 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEEQEHRETVLAELKKALSRDRTRMT 380 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+ G +R+ +V ILR + Q+ Sbjct: 381 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCEARGNVRTPRTVCYEILREILREARQFN 440 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +VV L ++ + I++ + + + + I Sbjct: 441 PKEFRILASQEVVDLFLEEESQHLAMLGDFVRKRISLEVEGAYSQEQYDI 490 >gi|322421132|ref|YP_004200355.1| ribonuclease, Rne/Rng family [Geobacter sp. M18] gi|320127519|gb|ADW15079.1| ribonuclease, Rne/Rng family [Geobacter sp. M18] Length = 937 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 188/503 (37%), Positives = 287/503 (57%), Gaps = 5/503 (0%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R A++++ + D E ++ T G++ +E+ A ++ + Sbjct: 16 RVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVDIGLKKLGFLQMGELH 75 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 N + + R+ IQEV++ Q L+VQ+ K ER NKG+A+TTY SL GR Sbjct: 76 PENW----KWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTTYASLPGR 131 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMP S ISRK+ + +RK LKEI + +P G G I+RT RT+ E+++D Sbjct: 132 YMVLMPG-SDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTRDELQKDL 190 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 + L+ L++ +RE L ++Y+E LI R IRD + DI E++V + +++ +D + Sbjct: 191 DNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVFKDVRDAL 250 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 K + P++ ++V+ +++ PIF R +E Q+D +++ +V L S G + I TEALVSIDVN Sbjct: 251 KEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVSIDVN 310 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 SG+ST E +EDTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N VEK LK Sbjct: 311 SGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNSEVEKTLKS 370 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +LK D+ARV V IS FGLLEMSRQRIR ++ +++T C +C G G ++S ++ALS LR Sbjct: 371 ALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAMALSFLR 430 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V + T ++ +V YLLN+KR + + E + + + V + Sbjct: 431 KVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVTVKGKPSYLLNQMEL 490 Query: 566 EKGSPVQALVNTGHKVGSDSQAP 588 E + + + P Sbjct: 491 ELIKREKLPQEELPQEKAQHGRP 513 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 4/183 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLI+A H EE RV ++ D R+ +LD E +Q +GNIY V RVE LQAAFVD Sbjct: 1 MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQ----IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 G + GFL E+HP+ ++ IP R + + + E + + Sbjct: 61 IGLKKLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS 120 Query: 117 DHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN 176 + P +S + ++ Y I+ Sbjct: 121 ALTTYASLPGRYMVLMPGSDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMG 180 Query: 177 RQI 179 R Sbjct: 181 RTR 183 >gi|84394052|ref|ZP_00992789.1| cytoplasmic axial filament protein [Vibrio splendidus 12B01] gi|84375338|gb|EAP92248.1| cytoplasmic axial filament protein [Vibrio splendidus 12B01] Length = 489 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 122/565 (21%), Positives = 210/565 (37%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGALQEIHVERDARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +I P + E+ Q +++ V G + Sbjct: 60 IGLEKAAFLHASDIVPH---------TECVAENEKKQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E + K+ I+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSESERNRLKKVVSRYCDEHGGFII 170 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + + LE Sbjct: 171 RTAAEGADSNELA--------------------------------QDAAFLKRLWLKVLE 198 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 R G I RDF V E + I+ R Sbjct: 199 RRGKHKARTRLYGELCLSQRILRDF----------------------VGTELSRIQVDSR 236 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + E +++ L + ++ LD Sbjct: 237 -----------LEYENLKEFTSEYVPELTEKLELYEGDKPIFDMYDTENEVQRSLD---- 281 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+QTEA+ ++D+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM +++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMLSEEHRKRVLTSLEAALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ + V L + + Sbjct: 402 CSSCPACEGRGSVKTVETVCYEILREITRVNRAYDADKFVVYAAAAVAEALEGDESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486 >gi|108762342|ref|YP_633779.1| ribonuclease [Myxococcus xanthus DK 1622] gi|108466222|gb|ABF91407.1| ribonuclease, Rne/Rng family [Myxococcus xanthus DK 1622] Length = 936 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 143/509 (28%), Positives = 243/509 (47%), Gaps = 7/509 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 A + P++ S E P + Sbjct: 280 AAALGDIIPSPAEEGAQAAKPSEVSGERRTPREAREAREPRNREKERGEKDKGRRPQEEK 339 Query: 155 ----GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 + K +R I++++K Q ++VQI K+ G KGA +T+++S+ GR+ V M Sbjct: 340 RRGDKHEDKEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFM 399 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 P ISR+I+N +R+ L++I L P G G I+RT + + +++ D +L+ Sbjct: 400 PTVDHVG-ISRRISNEKERRRLRDIVDRLRPP-GTGFIVRTVAENVPQEKLESDIRFLIE 457 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W+ V P L++ + +LI RA RDL+ D+ +++V + Y F+ P Sbjct: 458 VWNQVVRKNEKRGGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDP 517 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + V +E +F GIE +L Q +V L S GY+II+Q EAL +IDVNSGR Sbjct: 518 ALRDRVALHEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYV 577 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + +E+T + N+EAA+EI QLRLR++ G+I+ DFIDME+ +N V K L+E+L +D Sbjct: 578 GKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRD 637 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 +A+ V IS GL+EM+R+R+R S+ + C YC G G++++ ++VA I R + Sbjct: 638 KAKTNVLRISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRRE 697 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 Y ++++ +++V L ++R + R+ SI V + + I G Sbjct: 698 APGYKDSTLVINCNAEVARLLQGEERNELRHLMDRYNKSIQVKAQQNYHREQYDIY-GRS 756 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + + Sbjct: 757 ASGPEHKVASSPGSGDGELAMQQRKPDSN 785 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 9/153 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M++ ++I+A+ ETRV ++ + E E + K + GNIY +V RV P +QAAFVD Sbjct: 1 MSSILVINAA-GRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ D + + + + E D + + Sbjct: 60 IGLEKAAFLYVSDV--------VYDPDFARAQFELTEGEHEDAPDVPDESEAEAAEAAAR 111 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVK 153 E ++A + + ++ Sbjct: 112 HAPPRHLEPEPEDAHFEPVAAPTESLPRDTALE 144 >gi|28198332|ref|NP_778646.1| ribonuclease G [Xylella fastidiosa Temecula1] gi|182680971|ref|YP_001829131.1| ribonuclease [Xylella fastidiosa M23] gi|28056402|gb|AAO28295.1| ribonuclease G [Xylella fastidiosa Temecula1] gi|182631081|gb|ACB91857.1| ribonuclease, Rne/Rng family [Xylella fastidiosa M23] gi|307579438|gb|ADN63407.1| ribonuclease G [Xylella fastidiosa subsp. fastidiosa GB514] Length = 497 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 133/398 (33%), Positives = 221/398 (55%), Gaps = 2/398 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I E++++ Q L+VQ++KE G KGA +TT +S+ RY VL+P SK +S +I + + Sbjct: 98 PIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLP-QSKMVGVSLRIEDEAE 156 Query: 229 RKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 R LK + L G G I+RT ++ + D YL RLW V L Sbjct: 157 RARLKAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSL 216 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YE+ +L R++RDL KD+ +I V ++ + + + F+ MP A + Y HPIF Sbjct: 217 LYEDLSLSLRSVRDLIRKDVEKIKVDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFD 276 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 G+E ++ ++ L S GY++I QTEA+ ++DVN+G + +E+T +TNLEAA Sbjct: 277 LYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAA 336 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + +ARQLRLR+L G+IV+DFIDM++ ++ V + L+++L +D A+ V S GL+EM Sbjct: 337 QALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTTVYDFSPLGLVEM 396 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R S+ ++ C C G G I++ +V I R + + Q+ A ++V +V Sbjct: 397 TRKRTVESLQRQLSETCQTCGGRGTIKTVETVTYEIFRDITRAVRQFDAVRLLVIASPNV 456 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V + +++ A + E EA G +I + + + Sbjct: 457 VSRMTDEESAAVAELEAVLGKAIRFQADPHYLQEQYEV 494 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E + + + GNIY +V RV P +QAAFVD Sbjct: 1 MSEEILVNVTFG-ETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGMERTAFLHVNDV 73 >gi|255567240|ref|XP_002524601.1| hypothetical protein RCOM_1213430 [Ricinus communis] gi|223536154|gb|EEF37809.1| hypothetical protein RCOM_1213430 [Ricinus communis] Length = 963 Score = 276 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 147/625 (23%), Positives = 258/625 (41%), Gaps = 82/625 (13%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL + ++ EL E ++YL VT+ P + AFV+ G + Sbjct: 276 ILINSSICTMQRIAVLEEGKLVELLLEPVKTNVQCDSVYLGVVTKFVPHMGGAFVNIGHS 335 Query: 65 RHGFLPFLEI-HPDYYQIPFSDRQALLKE-----------SNIAQTDSEAVADDVTHGDV 112 R ++I I RQ KE + A +E + D+ D Sbjct: 336 RP---SLMDIKQSREPFIFPPFRQKTKKEKMNDSGLDSLEEHQAADGNEHTSQDIEGIDD 392 Query: 113 --TIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC- 169 + L + + E +E+ IS + V+ G + + Sbjct: 393 VAEFISQEDLVSLPHNDHDEHEADEDFDISEVKENVNGSIVDYGQADPRFEHFLGGRQHH 452 Query: 170 ---------------------------------------IQEVIKNRQILLVQIVKEERG 190 ++ ++VQ+VKE G Sbjct: 453 LEGEIMNRVVPSETEGSNGSKMSQPQYRKDSEHLLANDNKWTQVRKGTKIVVQVVKEGLG 512 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250 KG +T Y L R+ +L + IS+KI+ + + P G G+ R Sbjct: 513 TKGPTLTAYPKLRSRFWILHARCDRIG-ISKKISGIERTR--LRVIAKTLQPPGFGLTAR 569 Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIR 300 T + E+++D E L+ W N+ E A ++ +++ ++ Sbjct: 570 TVAGGHSLEELQKDLEGLLSTWKNILEHAKSAALAADEGIEGAIPVILHTAMGQTLSVVQ 629 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + + + +++V + Y E ++++ + P V Y+ P+F IE +++++ Sbjct: 630 DYFSEKVKKMVVDSPRTYHEVTNYLQEIAPDLCDRVELYDKRIPLFDEYKIEEEINNILS 689 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGR--STREHCIEDTALQTNLEAAEEIARQLRLRD 418 V LP G ++I QTEALVSIDVN G + + E L NLEAA+ IAR+LRLRD Sbjct: 690 KRVPLPRGGSLVIEQTEALVSIDVNGGHVMFGQGNSQEKAILDVNLEAAKRIARELRLRD 749 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM + N R V +++K +++ DR+ V+V +S GL+E++R+R+R SV Sbjct: 750 IGGIIVVDFIDMADDSNKRLVYEEMKTAVEGDRSMVKVSELSKHGLMEITRKRVRPSVSF 809 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH----------NIIVHTHSDVV 528 ++ CT C G + + + I + + L ++ + Sbjct: 810 MISEPCTCCHATGRVEALETSFSKIEQEICRLLAMMDQKAYPENPKTWPRFLLRVDHHMC 869 Query: 529 LYLLNQKRATIVEYEARFGVSINVV 553 YL + KR + + V I + Sbjct: 870 NYLTSGKRTRLAILSSSLKVWILLK 894 >gi|33596354|ref|NP_883997.1| putative ribonuclease [Bordetella parapertussis 12822] gi|33602360|ref|NP_889920.1| putative ribonuclease [Bordetella bronchiseptica RB50] gi|33566123|emb|CAE37023.1| putative ribonuclease [Bordetella parapertussis] gi|33576799|emb|CAE33878.1| putative ribonuclease [Bordetella bronchiseptica RB50] Length = 487 Score = 276 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 209/410 (50%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P+ Sbjct: 75 ENRSERSQGQTPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + + + G I+RT T EI D EYL +LW +V Sbjct: 135 IGISQKIDSESERTQLRERLQALMPPEEKGGFIVRTQAEGATDEEIAADLEYLRKLWASV 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A + AP ++++ L +R +RD+ I+V +++ ++ PS A Sbjct: 195 QAAARSQPAPTALHQDLTLGQRVLRDMVGPHTGTILVDSRSTSSALQEWARVYTPSVAER 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 +R Y P+F + ++ ++ V L S GY+I++QTEAL ++DVN+G Sbjct: 255 IRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNF 314 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G++++DFIDME+ + +V +LK++L +DR R+ Sbjct: 315 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDPDHRETVLAELKKALSRDRTRMT 374 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+ G +R+ +V ILR + Q+ Sbjct: 375 VNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCQSRGNVRTARTVCYEILREILREARQFN 434 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + VV L ++ + G I++ + + + + + I Sbjct: 435 PREFRILAAQGVVDLFLEEESQHLAMLGDFVGKQISLEVESQYSQEQYDI 484 >gi|95929472|ref|ZP_01312215.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684] gi|95134588|gb|EAT16244.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684] Length = 952 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 214/637 (33%), Positives = 328/637 (51%), Gaps = 13/637 (2%) Query: 81 IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 +P DR A++++ + + D E+ T G++ +E+ A + + Sbjct: 28 LPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFIDYGAQRPGFLQ 87 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 S R+ I E++K Q +LVQ+VKEERG KGAA+TT + Sbjct: 88 IGEIHPSLYPKRDDEGQ------SNRRPPITEILKRGQQILVQVVKEERGTKGAALTTEV 141 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SL GRY VL+P +S ISRKI N RK +K LE+P MG I+RTA + E Sbjct: 142 SLPGRYMVLIPQSSSRG-ISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQPPEE 200 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 +KRDF+YL+ ++++ + + AP L+Y+E NL+ R+IRD + +I E+++ + ++E Sbjct: 201 LKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREVFQE 260 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 A+DF K +MP Y +V+ +++ PIF R IE Q+ L V LPS G ++++QTEALV Sbjct: 261 ARDFFKAVMPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTEALV 320 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVNSG+ E +E TA + NLEAA E+ARQLRLRD+ GLIV+DFIDM +++N R VE Sbjct: 321 AIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAREVE 380 Query: 441 KKLKESLKKDRARVQVGAIS-NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 K LK +LK D+ARV VG IS FGLLEMSRQRI++++ E + +C +C+G+G IRS S Sbjct: 381 KALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSDESR 440 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 ++++LR ++ + ++ D YLLN KR + + E R+ + I + Sbjct: 441 SIALLRRIQAGTAKGHIEAVVCTAALDTANYLLNNKRRELYDLEQRYKLIIEIKGDPGYL 500 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + IE + + Q P D ++ E +LP S D ++ Sbjct: 501 PEQVDIEFVKQS----REQRQENRNDQGPLVDTDLSERANIEVVLPDASSAEQGDQENAQ 556 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 E+ RK RRRRR + + + S + Sbjct: 557 KEEKDEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQDKAAQTQAPQ 616 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ A E S PE + + S ++T Sbjct: 617 QSEAPSQPEQ-PPIAEKSSEPEPQENTPKSGENSEET 652 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ KMLI+A+ EE RV ++ D + ELD ES +Q KGNIY +V RVE LQAAF+D Sbjct: 18 MSKKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFID 77 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQ 87 YG R GFL EIHP Y P D + Sbjct: 78 YGAQRPGFLQIGEIHPSLY--PKRDDE 102 >gi|332283769|ref|YP_004415680.1| putative ribonuclease [Pusillimonas sp. T7-7] gi|330427722|gb|AEC19056.1| putative ribonuclease [Pusillimonas sp. T7-7] Length = 487 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 115/410 (28%), Positives = 200/410 (48%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P+ Sbjct: 75 QNRKERSNGSAITPIEKLLFEGQSLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + R G I+RT T E++ D YL LW ++ Sbjct: 135 VGISQKIESEEDRISLRERVLRFSAPDEKGGFIVRTQAEGATDDELQADQSYLRTLWSSI 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 ++ A + P L++ + L +R +RD+ I+V + + PS Sbjct: 195 QDKARSQPTPSLLHNDLTLAQRVLRDMVGPHTGTIMVDSRSTTQSLLGWASTYTPSVLDR 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 ++ Y P+F + ++ ++ V L S GY+II+QTEAL ++DVN+G Sbjct: 255 IKHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNF 314 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA +ARQLRLR+L G+I++DFIDM++ ++ SV +L + L KDR R+ Sbjct: 315 DDTIFKTNLEAAVALARQLRLRNLGGIIILDFIDMDDAEHRNSVLAELNKVLSKDRTRMT 374 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V S GL+EM+R+R R S+ + C C+ G +R+ ++ ILR + Q+ Sbjct: 375 VSGFSQLGLVEMTRKRTRDSLAHQLCEPCPTCQSRGNVRTPRTLCYEILREILRESRQFN 434 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + D+V L ++ A + G I++ + + + + I Sbjct: 435 PKEFRILASQDIVDLFLEEESAHLAMLGDFIGKPISLEVESQYTQEQYDI 484 >gi|329911385|ref|ZP_08275491.1| Ribonuclease E [Oxalobacteraceae bacterium IMCC9480] gi|327545937|gb|EGF31035.1| Ribonuclease E [Oxalobacteraceae bacterium IMCC9480] Length = 487 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 114/397 (28%), Positives = 197/397 (49%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I++++ + + VQ++K+ G KGA ++T +S+AGR V +P S R Sbjct: 88 PIEKLLFDGMAITVQVIKDPIGTKGARLSTQISIAGRMLVYLPQDSHIGISQRIEKESER 147 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 ++ + L G I+RT ++ +++ D +YL + W + A + L+ Sbjct: 148 EALRGKVQKLLPPEEKGGFIIRTMAEDASEADLQMDIDYLRKTWSTIAASAKSKPPTSLL 207 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 +++ +L +R +RD D S I V + + + F PS + Y P+F Sbjct: 208 HQDLSLAQRVLRDFVGDDTSTIQVDSRENFLMLQQFGTSYTPSVLTRLSHYTGERPLFDL 267 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 G+E ++ V L S GY+I++QTEA+ +IDVN+G +DT +TNLEAA Sbjct: 268 YGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSYVNGRNFDDTIFKTNLEAAH 327 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 IARQLRLR+L G+I++DFIDME ++ SV +L ++L +DR ++ V S GL+EM+ Sbjct: 328 AIARQLRLRNLGGIIILDFIDMENAEHRASVLSELHKALARDRTKMSVSGFSALGLVEMT 387 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+R R S+ + C C G G +++ ++ ILR + Q+ + VV Sbjct: 388 RKRTRESLARILCETCPACSGRGQVKTARTICYEILRELLREAKQFNPREFRILASQIVV 447 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L ++ + G I++ + + + I Sbjct: 448 DMFLEEESQHLAMLGDFIGKPISLQVETVYQQEQYDI 484 >gi|291615207|ref|YP_003525364.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1] gi|291585319|gb|ADE12977.1| ribonuclease, Rne/Rng family [Sideroxydans lithotrophicus ES-1] Length = 485 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 122/398 (30%), Positives = 206/398 (51%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I++V+ Q LLVQ++K+ G KGA ++T LS AGR V +P S R Sbjct: 85 KPIEKVLFEGQSLLVQVIKDPIGTKGARLSTQLSFAGRLLVYLPQESHIGVSQRIENEEE 144 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 ++ + L G I+RT S + E++ D YL +LW N+++ +L P L Sbjct: 145 RESLRNKLQQVLPAEHKGGYIIRTMAESASDSELRADVAYLDKLWSNLQQQSLQLAPPAL 204 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +Y+E ++ R +RD ++ S ++V + + F S + +Y P+F Sbjct: 205 LYKELDISLRVLRDFVNEETSRLLVDSRETHERMMSFATDYSASAVPKLERYVGARPLFD 264 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 G+E +++ V L S GY+II+QTEAL ++DVN+G +DT +TNLEAA Sbjct: 265 LYGVEEEIERALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNFDDTIFKTNLEAA 324 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + IARQLRLR+L G+I+ DFIDM+ ++ +V ++ K+ L DR R+ V S GL+EM Sbjct: 325 QVIARQLRLRNLGGIIICDFIDMDTVEHRDAVLEEFKKMLAHDRTRISVNGFSALGLVEM 384 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + C C+G G +++ +V ILR + Q+ A + V Sbjct: 385 TRKRTRESLAHVLCEPCPTCQGRGEVKTAQTVCYEILREIVREARQFNAREYRILASQQV 444 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + L+++ ++ G I++ + + + + + Sbjct: 445 IDLYLDEESQSLAMLSDFIGKPISLQVETLYSQEQYDV 482 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV V++ V+EL E ++ + N+Y+ KV RV P +Q+AF+D Sbjct: 1 MTEEILINVT-PQETRVAVMQQGVVQELHIERGSQRGLVSNVYVGKVKRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERSAFLHVADI 73 >gi|307544579|ref|YP_003897058.1| ribonuclease E [Halomonas elongata DSM 2581] gi|307216603|emb|CBV41873.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581] Length = 1179 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 196/561 (34%), Positives = 306/561 (54%), Gaps = 6/561 (1%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K S + K+ + I+EV+K Q ++VQ+ KEERGNKGAA+TT++SLAGR+ VLMPN Sbjct: 71 KEVSRDYFIKEPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAGRFLVLMPN 130 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + ISR+I LKE L VP MG+I+RTAG R+ E++ D +YL+++W Sbjct: 131 NPRAGGISRRIEGEERA-QLKEAMGQLTVPDKMGLIVRTAGIGRSPEELQWDLDYLVQVW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 +++ A AP L+Y E N+I RA+RD +DI E+++ E+ ++EA F++ +MPSY Sbjct: 190 ESITGEAGKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSEEVHQEALTFIRQVMPSY 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + +++Y D P+F R IE Q+++ ++ EV LPS G ++I+ TEALVSID+NS R+TR Sbjct: 250 QQKIKRYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSIDINSARATRG 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 IE+TALQTNLEAA+EIARQLRLRD+ GL+V+DFIDM +N R VE +++++LK DRA Sbjct: 310 SDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRVRDALKIDRA 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 RVQ+G IS FGL+EMSRQR+R S+ E++ VC C G G IR S++LSI+R +EE + Sbjct: 370 RVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSISLSIMRLIEEEAM 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + I V YLLN+KR+ + + E R GV + ++ ++ + +++ Sbjct: 430 KERSAQIRAILPVPVATYLLNEKRSVLADIEQRQGVRVVLLPHPDMDTPHYDVQRLRDDH 489 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 G + + + + + + + + Sbjct: 490 VDEEGGIQSSFELSTDTEVGREPEAAFGRPVKRDEAAVKTVVHHEPAPASLQQDTPSQPA 549 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-LLENGAHGFTENYD 691 +PA + + + + + L ++ Sbjct: 550 A----NKPAANKPATSKPAPGKPAAAPVPSQREGVLGRLVKGFTRLLSGEEDTQSGQSTA 605 Query: 692 VSIPPVSTPEMESSNSSSDPI 712 S P S + ++ Sbjct: 606 QSAQPRSETQTRDTSGKQQDK 626 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 45/105 (42%), Positives = 63/105 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY K+TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP E+ DY+ S R ++ + Q V + Sbjct: 62 AERHGFLPLKEVSRDYFIKEPSGRPSIKEVLKEGQEVIVQVDKEE 106 >gi|30678106|ref|NP_850989.1| RNEE/G (RNASE E/G-LIKE); endoribonuclease [Arabidopsis thaliana] gi|330250721|gb|AEC05815.1| RNAse E/G-like protein [Arabidopsis thaliana] Length = 619 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 135/558 (24%), Positives = 246/558 (44%), Gaps = 59/558 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 48 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 107 Query: 65 RHGFLPFLEIHPD---YYQIPFSDRQA---------LLKESNIAQTDSEAVADDVTHGDV 112 RH F+ +I + + PF D L A + E + D + Sbjct: 108 RHSFM---DIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 164 Query: 113 TIPNDHSLEEV---------------------------APIANFSQETEEESIISANNDV 145 + + E +E I Sbjct: 165 LDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVNGTVVNHGAVEVGSENGHIPMERGHS 224 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ + K IQ ++ ++VQ+VKE G KG +T Y L R Sbjct: 225 ADSLDSNASVAKASKVMSSKDNKWIQ--VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 282 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+ + +S+KI+ + ++ P G G+ +RT A + E+++D Sbjct: 283 FWVLLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 339 Query: 266 EYLMRLWDNVRELALNSV----------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + L+ W N+ + A ++ P L++ ++D + + +++V Sbjct: 340 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 399 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y E +++ + P V ++ P+F IE +++ + V L + G ++I Q Sbjct: 400 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 459 Query: 376 TEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEALVSIDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ Sbjct: 460 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 519 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N R V +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + Sbjct: 520 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 579 Query: 494 RSQSSVALSILRSVEEYL 511 + + I + + L Sbjct: 580 EALETTFSKIEQEICRQL 597 >gi|33593311|ref|NP_880955.1| putative ribonuclease [Bordetella pertussis Tohama I] gi|33572667|emb|CAE42590.1| putative ribonuclease [Bordetella pertussis Tohama I] gi|332382720|gb|AEE67567.1| putative ribonuclease [Bordetella pertussis CS] Length = 487 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 209/410 (50%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P+ Sbjct: 75 ENRSERSQGQTPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPH 134 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + + + + G I+RT T EI D EYL +LW +V Sbjct: 135 IGISQKIDSESERTQLRERLQALMPPEEKGGFIVRTQAEGATDEEIAADLEYLRKLWASV 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A + AP ++++ L +R +RD+ I+V +++ ++ PS A Sbjct: 195 QAAARSQPAPTALHQDLTLGQRVLRDMVGPHTGTILVDSRSTSSALQEWARVYTPSVAER 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 +R Y P+F + ++ ++ V L S GY+I++QTEAL ++DVN+G Sbjct: 255 IRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNF 314 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G++++DFIDME+ + +V +LK++L +DR R+ Sbjct: 315 DDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDPDHRETVLAELKKALSRDRTRMT 374 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+ G +R+ +V ILR + Q+ Sbjct: 375 VNGFTQLGLIEMTRKRTRDSLAHQLCEPCPMCQSRGNVRTARTVCYEILREILREARQFN 434 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + VV L ++ + G I++ + + + + + I Sbjct: 435 PREFRILAAQGVVDLFLEEESQHLAMLGDFVGKQISLEVESQYSQEQYDI 484 >gi|255690594|ref|ZP_05414269.1| ribonuclease G [Bacteroides finegoldii DSM 17565] gi|260623863|gb|EEX46734.1| ribonuclease G [Bacteroides finegoldii DSM 17565] Length = 524 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 136/579 (23%), Positives = 245/579 (42%), Gaps = 60/579 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL ++ ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + + + +K++ + +++ D+ D ++ Sbjct: 60 VGYEKDAFLHYLDLGPQF-----NSLEKFVKQTLSDKKKLNSISKATLLPDLD--KDGTV 112 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + IS +++ G +P K + + Sbjct: 113 SNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR 172 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L Q+ + P I R + L R L Sbjct: 173 LKQL---------------------LMSIKP--KNFGVIVRTVAEGKRVAELDGELRVLI 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 ++ P L+YEE + +R Sbjct: 210 KHWEDAMVKVQKAT----------------------------KYPTLIYEETSRAVGLLR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ I V+ E Y E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 242 DLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDNFGITKQIKSSFG 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419 ++ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD+ Sbjct: 302 KTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRDM 361 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ + Sbjct: 362 GGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVN 421 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 TT+ C C G G I+S ++ ++ + + +H H V Y+ + Sbjct: 422 TTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAYINQGLVSLK 481 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I V+ +LA + + + Sbjct: 482 RKWQMKYGFGIKVIPSQKLAFLQYVFYDTHGEEIDMKEE 520 >gi|322417679|ref|YP_004196902.1| ribonuclease, Rne/Rng family [Geobacter sp. M18] gi|320124066|gb|ADW11626.1| ribonuclease, Rne/Rng family [Geobacter sp. M18] Length = 496 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 140/565 (24%), Positives = 241/565 (42%), Gaps = 72/565 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N+++I+ + ETR+ ++ + + EL E K I GNIY +V RV P +QAAFVD Sbjct: 1 MGNELVINTT-SHETRIALIENGTIAELYVERSRVKGIIGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL ++ +A+ + ++ + Sbjct: 60 IGLEKAAFLYVADV-------------------------FDAMDEYDSYIQPEEGEEPVP 94 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + PI QE +E + + + + G+ ++ + + + Sbjct: 95 HPLHPIEELLQEGQELLVQISKEPIGT------KGARITAHISLPGRHLVYMPTVDHVGI 148 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I E + + + G G I R ++ ++L L Sbjct: 149 SRRIEDEAERERLKEIVDRIKPVG-----------GGFIVRTVSEGKSEEDLVADLHYLT 197 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I + + I D + ++ ++ ++ + E + I + I Sbjct: 198 KLWDE--IAKKKDKAGAPTLIHSDLDVTQKVVRDILTESVERIVVD-SKPEHDKIVQFIS 254 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 P + Y++ PIF G+EV++ Sbjct: 255 TFM--------------------------PKMKYSIELYDEEEPIFDHFGLEVEISRALG 288 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II QTEAL +IDVN+GR +H +EDT L+TNLEA +EIA QLRLR+L Sbjct: 289 RKVWLKSGGYIIIEQTEALTAIDVNTGRYVGKHNLEDTILKTNLEAVKEIAYQLRLRNLG 348 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDME++ N V L+E+LK D+++ + IS GL+EM+R+R+R S+ Sbjct: 349 GIIIIDFIDMEKEVNREKVYGALEEALKSDKSKTNILKISELGLVEMTRKRVRESLGRMM 408 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC+G GY++S+ +V I R + +L +++ H V L +++R + Sbjct: 409 CEPCPYCEGRGYVKSKITVCHEIFRELRREMLDIRGTKVMLTVHPQVADLLYDEERRGLE 468 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E F I V + F + Sbjct: 469 ELEKNFKKRITVRAKPGFHQEQFEV 493 >gi|170728719|ref|YP_001762745.1| ribonuclease G [Shewanella woodyi ATCC 51908] gi|169814066|gb|ACA88650.1| ribonuclease, Rne/Rng family [Shewanella woodyi ATCC 51908] Length = 500 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 117/562 (20%), Positives = 209/562 (37%), Gaps = 80/562 (14%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI+ + E RV ++ ++E+ E K+ + GNIY KV+RV P +QAAFVD G Sbjct: 16 ELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 74 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 ++ FL +I P + E A+ + V G + Sbjct: 75 DKAAFLHASDIVPH---------TECVAEGEKGNFVVRAIGELVRQGQDIMVQVVKDPLG 125 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 A + + S S+V + E++ + K+ I+ Sbjct: 126 TKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEIRSRLKKLTEPFVDEDGGFII--- 182 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 T AG ++ + R++ + V + + L Sbjct: 183 -------------RTAAESAGEKELV-----QDAAFLRRVWSKVSERRKRRGVSLLYQDL 224 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 + V + +I+ D + + +A + + G + + D Sbjct: 225 ALPVRIVRDFVGTELDQIQVDSSQTYEELQAFADEFMPEIAEKIEHYNGPVPIFDLYD-- 282 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +E ++ +V Sbjct: 283 -----------------------------------------------VENEVQRALGRKV 295 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L S GY+II+QTEA+ ++D+N+G +E+T TN+EA IARQLRLR+L G+I Sbjct: 296 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNMEATHAIARQLRLRNLGGII 355 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 ++DFIDM + ++ + V L+ +L D + + S GL+EM+R+R R S+ Sbjct: 356 IIDFIDMLKSEHQKRVLASLELALSHDTVKTNISGFSGLGLVEMTRKRTRESLEHVLCGE 415 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G +++ +V+ I R + Y A +V+ V L ++ + E Sbjct: 416 CPVCLGTGSLKTVETVSYEIFREIIRLDRSYDADEFLVYCSPTVFNSLTGEESHLVAELG 475 Query: 544 ARFGVSINVVIGIELADKLFYI 565 G + + A F + Sbjct: 476 VYIGKRVRFQNEVMYAQNKFDV 497 >gi|301062335|ref|ZP_07202998.1| S1 RNA binding domain protein [delta proteobacterium NaphS2] gi|300443539|gb|EFK07641.1| S1 RNA binding domain protein [delta proteobacterium NaphS2] Length = 500 Score = 274 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 166/440 (37%), Positives = 265/440 (60%), Gaps = 2/440 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + + KK I++++K Q LLVQ+ +E +G+KGA +TT Sbjct: 63 SDKNGFLSVTDIHPEYYASDQDKKKEGAPPRIEKILKKGQELLVQVTREMQGHKGAQLTT 122 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSLA RY VLMP + G IS+KI + +R+ LK I ++P G+G I+RTA ++K Sbjct: 123 YLSLASRYLVLMPGSKGG--ISKKIDDEEERQRLKSIMTQFKLPEGVGYIVRTAAFKQSK 180 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 +I RD L+R+W N+++ + LV++E ++ R +RD + +I+E++V ++ Sbjct: 181 RDISRDLNRLLRMWKNIKKNVREASPLTLVHKEQDVCLRTLRDYFTSEIAEVLVDDKETL 240 Query: 319 REAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEA 378 + +D+MK++ P + V+ +++ PIF + IE Q++++++ V L S G ++I+ TEA Sbjct: 241 NKVRDYMKVISPRHQGRVKLFKEKRPIFAQYEIEKQIETIYRNRVPLKSGGSIVIDPTEA 300 Query: 379 LVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 LV+IDVNSGR +E+TA +TN+EAAEEIARQLRLRD+ GL+V+DFIDM EKK+ R Sbjct: 301 LVAIDVNSGRMRTGADVENTAFKTNIEAAEEIARQLRLRDMGGLVVIDFIDMREKKHIRE 360 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 VEK L++ K+DRA++ + IS FGLLE+SRQR+R S+ + + C YC+G G + S + Sbjct: 361 VEKVLRDKAKEDRAKISLSNISKFGLLELSRQRLRPSIEAVSYQTCAYCQGRGLVPSIET 420 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 A+S LR + L + + DVV YL N+KR + E R+G+ I + L Sbjct: 421 AAISFLRRIRMGLSKKGILRVKGVLAEDVVEYLQNRKRKDLARMEMRYGLEIILQGDPSL 480 Query: 559 ADKLFYIEKGSPVQALVNTG 578 + +E ++ Sbjct: 481 SPDGGLLEFVKEERSPAPRP 500 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +KMLI+A EE R+ V++D R++ E+ +Q GNIY V R+EPSLQA FV+ Sbjct: 1 MKSKMLINAVEAEEFRIAVIKDGRLDGFYIETTATEQKTGNIYKGVVERIEPSLQACFVN 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 +G +++GFL +IHP+YY SD+ + + ++ Sbjct: 61 FGSDKNGFLSVTDIHPEYY---ASDQDKKKEGAPPRIEKILKKGQEL 104 >gi|308273585|emb|CBX30187.1| Ribonuclease E [uncultured Desulfobacterium sp.] Length = 490 Score = 274 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 180/469 (38%), Positives = 264/469 (56%), Gaps = 1/469 (0%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156 + + + + E +++ Sbjct: 16 RIAKVKDNKLEEFHTENAAREITQSNIYKGIVTRIEPSLQAVFIDYGAERQGFLQKNEIH 75 Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + I ++K Q LVQ+ K+ KGA +TTY+SLAGR+ VLMP S+G Sbjct: 76 SDYFHDSDSGDRSITSIVKQGQEFLVQVTKDPIMKKGAMLTTYISLAGRFVVLMPG-SEG 134 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 +SRKI++ +RK LKE +++P G G+I+RTAG TKIEI RD YL+RLW N++ Sbjct: 135 VGVSRKISDEEERKRLKETVSNIKIPEGFGIIVRTAGTDSTKIEISRDIAYLLRLWKNIK 194 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + +P L+Y+E +L+ R+IRD + D++EI++ YRE +DF+K++ P +A IV Sbjct: 195 SNVMEVKSPALLYKERHLVVRSIRDYFTSDVNEILIDDPAVYREVRDFIKIISPKHATIV 254 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + ++ PIF + +E Q+ S+ + V L S G ++I QTEALV+IDVNSG++T IE Sbjct: 255 KLFKGDKPIFTKFQLENQISSIFENRVKLKSGGSIVIEQTEALVAIDVNSGKATHTKSIE 314 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +TA TNLEAAEEIARQLRLRDL GLIVVDFIDM + K+N VEK K +K+D+AR++ Sbjct: 315 ETAHATNLEAAEEIARQLRLRDLGGLIVVDFIDMRDSKHNLEVEKVFKTFVKEDKARIKF 374 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G IS FGL+E+SRQRIR S+ + + C+YCKG G S + LS LR + L+ Sbjct: 375 GKISRFGLMELSRQRIRPSIEFGSYEPCSYCKGKGVTPSAETQGLSFLRKLSLAALKDDI 434 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ +V YL N+KR I + E R ++I + + I Sbjct: 435 TSVKGIVPVNVADYLSNKKRKDIFDIETRRSLNIRIEGNSSMLPGECEI 483 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 36/79 (45%), Positives = 52/79 (65%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ K++I+A E R+ ++DN++EE E+ ++ + NIY VTR+EPSLQA F+D Sbjct: 1 MSGKIIINAVDPAECRIAKVKDNKLEEFHTENAAREITQSNIYKGIVTRIEPSLQAVFID 60 Query: 61 YGGNRHGFLPFLEIHPDYY 79 YG R GFL EIH DY+ Sbjct: 61 YGAERQGFLQKNEIHSDYF 79 >gi|213963165|ref|ZP_03391423.1| ribonuclease, Rne/Rng family [Capnocytophaga sputigena Capno] gi|213954249|gb|EEB65573.1| ribonuclease, Rne/Rng family [Capnocytophaga sputigena Capno] Length = 514 Score = 274 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 153/575 (26%), Positives = 261/575 (45%), Gaps = 68/575 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S +LRD R+ EL E + G+I LAKV + L AAFV+ Sbjct: 1 MDKELII-RSGSSYVDFALLRDGRLIELHKEEDANGLGVGDIMLAKVRKPIQGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P + Q LK + ++ D D+ Sbjct: 60 VGHEKDAFLHYHDLGPQ-----LASLQKFLKWVLSGKLKDFSLKDFPLEPDINKNGS--- 111 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 I + +K Q + Sbjct: 112 -------------------------------------------------IADTLKPNQPI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +++ LS+AGRY VL+P + + +IS+KI +++ L+++ +G++ Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDR-ISISQKIEGKAEKERLRKLLQGIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G GVI+RT + E+ +D + L W + +V P V E + +R Sbjct: 182 PK-GFGVIVRTVAEGKKVAELDKDLQGLFNRWVLMCRKIQKAVYPSKVMSEVSKTGAILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I V E Y + K +++ + P IV+ Y PIF + IE Q+ + Sbjct: 241 DMFNDTFTGIHVDNEHLYEQIKKYVREIAPEKENIVKLYHSSVPIFEKFHIERQIKTAFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419 V++P Y++I TEAL IDVNSG + ++ ++ TAL NL AA EIARQLRLRD+ Sbjct: 301 RTVSMPKGAYLVIEHTEALHVIDVNSGNHSNKNNDQETTALSVNLIAATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM +N R + L+ + +DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMGNSENRRILFDHLRNEMAEDRAKHKILPPSKFGLIQITRQRVRQELNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVVLYLLNQKRAT 538 T + +G I + + I +E + + I+++ H + YL ++ Sbjct: 421 TKEENPSKEGE--IEAPIVLVDKINIELESIIKEDAYKGRIVLNAHPFIAAYLTKGLFSS 478 Query: 539 IV-EYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 I ++ ++ I ++ + + + + Sbjct: 479 IRFKWFLKYKRWIKILPRDAYSYLEY---RFKTSE 510 >gi|311695113|gb|ADP97986.1| ribonuclease, Rne/Rng family [marine bacterium HP15] Length = 1074 Score = 274 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 200/584 (34%), Positives = 307/584 (52%), Gaps = 12/584 (2%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ + P + + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL Sbjct: 68 KEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVL 127 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE ++VP MG+I+RTAG RT E++ D +YL+ Sbjct: 128 MPNNPRAGGISRRIEGDERAQ-LKEAMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLV 186 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + W+ + + A AP L+++E N+I RA+RD +DI E+++ Y + +F++ +M Sbjct: 187 QFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYEDVLNFVRAVM 246 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P++ ++ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+ Sbjct: 247 PTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRA 306 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM K+ R VE+K++E+L+ Sbjct: 307 TKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEI 366 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E+ ++VC C+G G IR S+ALSI+R + E Sbjct: 367 DRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYE 426 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + V +LLN+KR + + EAR VS+ VV + F I + Sbjct: 427 ESSKDKTGEVRAVVPVSVATFLLNEKRKQLADIEARQEVSVVVVPVPHMETPHFEIIRMR 486 Query: 570 PVQALVNTGHKVGSDSQAPSYDKN-------IECVWQDEALLPIPKSESLEDIQDNIVSE 622 + + ++ + V + A+ I S Sbjct: 487 QDETTPEHISSHQVAQEYSEREEEIFEAPTPEKPVREQAAVKAIRPSAPAPAPAPAAPKA 546 Query: 623 ESTGVIR----KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + T +R R+ + + + S Q + Sbjct: 547 DETTEQEEGLFRRLGRKIAGFFSGEEEQKVENREQSQSQREDRRNQGRQDRRKSRVARGD 606 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + + + R+ Sbjct: 607 DQRAGGNRSGNERRQGGQQGRGDDNRGRGRNRNDDQNRGNQNRQ 650 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 41/76 (53%), Positives = 56/76 (73%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+H EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 1 MLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDFGAE 60 Query: 65 RHGFLPFLEIHPDYYQ 80 RHGFLP EI +Y++ Sbjct: 61 RHGFLPLKEISKEYFK 76 >gi|163787182|ref|ZP_02181629.1| Ribonuclease G [Flavobacteriales bacterium ALC-1] gi|159877070|gb|EDP71127.1| Ribonuclease G [Flavobacteriales bacterium ALC-1] Length = 514 Score = 274 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 149/564 (26%), Positives = 260/564 (46%), Gaps = 62/564 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + LI S + +L+D ++ EL + E G+I++AK+ +V P L AAFV+ Sbjct: 1 MNKE-LIVRSSSDIVDFALLKDGKLIELHKDEEDNDFAVGDIFIAKIRKVMPGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + GFL + ++ P Q+P +K + + + D D+ + Sbjct: 60 VGYEKDGFLHYHDLGP---QLPS--LLKFIKRVSTGKLRDYTLKDFPKEKDLDKHGKIAH 114 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + Sbjct: 115 AIKSNQS----------------------------------------------------I 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE KG +++ LS+AGRY VL+P +++ +IS+KI + ++ LK + + + Sbjct: 123 LVQVVKEPISTKGPRISSELSIAGRYIVLVPFSNR-ISISQKIESQEEKDRLKRLVKSI- 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G GVI+RT + E+ D + L+ W + + + P V E N +R Sbjct: 181 TPKGFGVIIRTVAEGKKVAELDSDLQNLLGRWTAMCKKLYKAHHPTKVLGEMNKASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ S I+V E+ Y + KD+++ + P IV+ Y++ PIF + GIE Q+ + Sbjct: 241 DIFNDSFSGIVVDDEELYIQVKDYVQQIAPKKESIVKHYKNGVPIFEKFGIERQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEAL +DVNSG RS +E EDTAL+ N+ +A EIARQLRLRD+ Sbjct: 301 RTVSMAKGAYLVIEHTEALHVVDVNSGNRSNKEKSQEDTALEVNMISAAEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IV+DFIDM +N + + L++ +K D+A+ ++ S FGL++++RQR+R Sbjct: 361 GGIIVIDFIDMGRAENRKKLYNYLRDEMKDDKAKHKILPPSKFGLVQITRQRVRPERNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + G I + V I + + + + ++ H + +L + Sbjct: 421 TKEENPNLVGGDEIEAPIKVVERI-NQDLQRIFKKDYKKVTLNAHPFIAAFLTKGFPSPR 479 Query: 540 VEYEARFGVSINVVIGIELADKLF 563 ++ + V+ + Sbjct: 480 SKWFVEHKKWVKVLPRDAYTYLEY 503 >gi|121594274|ref|YP_986170.1| ribonuclease G [Acidovorax sp. JS42] gi|120606354|gb|ABM42094.1| RNAse G [Acidovorax sp. JS42] Length = 495 Score = 274 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 129/424 (30%), Positives = 209/424 (49%), Gaps = 2/424 (0%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V +GG +K + I++ + Q L+VQ++K+ G+KGA ++T +S+A Sbjct: 69 HVADVWHRQEGGEAPMFARKNEPPVPIEKQVFEGQALMVQVIKDPIGSKGARLSTQISIA 128 Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 GR V +P + R L+++ G G ILRT G + E+ Sbjct: 129 GRLLVFLPQDDHVGVSQKIPQAERDALRTRLQKLVDDQASGNGGGFILRTNGEDASDEEL 188 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 D YL + W +R+ AL L+Y++ +L++R +RDL + I + + + Sbjct: 189 AEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRIDSREQFVAL 248 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F MP+ A ++ Y+ PIF I+ ++ V L S GY+I++QTEAL + Sbjct: 249 KAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIVDQTEALTT 308 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G +DT +TNLEAA IARQLRLR+L G+++ DFIDM + + +V Sbjct: 309 IDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAVLA 368 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + ++ L +DR + VG S GL+EM+R+R R S+ + C C+GAG +++ SV Sbjct: 369 EFRKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCQGAGQVKTARSVCY 428 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR V Q+ V VV L+++ + G I++ + Sbjct: 429 DILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQAESAMGQA 488 Query: 562 LFYI 565 + I Sbjct: 489 QYDI 492 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ + V+EL E ++ + GN+YL KV+RV P +Q+AF+D Sbjct: 1 MQQDILINWS-PQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 IGLERAAFLHVADV 73 >gi|71276040|ref|ZP_00652321.1| Ribonuclease E and G [Xylella fastidiosa Dixon] gi|71899462|ref|ZP_00681620.1| Ribonuclease E and G [Xylella fastidiosa Ann-1] gi|170729677|ref|YP_001775110.1| ribonuclease G [Xylella fastidiosa M12] gi|71163123|gb|EAO12844.1| Ribonuclease E and G [Xylella fastidiosa Dixon] gi|71730775|gb|EAO32848.1| Ribonuclease E and G [Xylella fastidiosa Ann-1] gi|167964470|gb|ACA11480.1| ribonuclease G (cytoplasmic axial filament protein) [Xylella fastidiosa M12] Length = 497 Score = 274 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 133/398 (33%), Positives = 222/398 (55%), Gaps = 2/398 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I E++++ Q L+VQ++KE G KGA +TT +S+ RY VL+P SK +S +I + + Sbjct: 98 PIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLP-QSKMVGVSLRIEDEAE 156 Query: 229 RKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 R LK + L G G I+RT ++ + D YL RLW V L Sbjct: 157 RARLKAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSL 216 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YE+ +L R++RDL KD+ +I V ++ + + + F+ MP A + Y HPIF Sbjct: 217 LYEDLSLSLRSVRDLIRKDVEKIKVDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFD 276 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 G+E ++ ++ L S GY++I QTEA+ ++DVN+G + +E+T +TNLEAA Sbjct: 277 LYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAA 336 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + +ARQLRLR+L G+IV+DFIDM++ ++ V + L+++L +D A+ +V S GL+EM Sbjct: 337 QALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTKVYDFSPLGLVEM 396 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R S+ ++ C C G G I++ +V I R + + Q+ A ++V +V Sbjct: 397 TRKRTVESLQRQLSETCQECGGRGTIKTAETVTYEIFRDITRAVRQFDAVRLLVIASPNV 456 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V + +++ A + E EA G +I + + + Sbjct: 457 VSRMTDEESAAVAELEAVLGKAIRFQADPHYLQEQYEV 494 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E + + + GNIY +V RV P +QAAFVD Sbjct: 1 MSEEILVNVTFG-ETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGMERTAFLHVNDV 73 >gi|332520147|ref|ZP_08396611.1| ribonuclease, Rne/Rng family [Lacinutrix algicola 5H-3-7-4] gi|332044706|gb|EGI80900.1| ribonuclease, Rne/Rng family [Lacinutrix algicola 5H-3-7-4] Length = 514 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 142/564 (25%), Positives = 260/564 (46%), Gaps = 62/564 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S+ + +L+D ++ EL + + G++++AK+ + P L AAFV+ Sbjct: 1 MNKELII-RSNSDGVDFALLKDGKLIELHKDEDSNNFAVGDVFIAKIRKAVPGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P I + Sbjct: 60 VGYEKDAFLHYHDLGP------------------------------------KISSLLKF 83 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + +E + D + +V + Sbjct: 84 TKSVSTGKLNDFSLKEFPFEKDIDKDGKINNVLKSNQSM--------------------- 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +++ LS+AGRY VL+P + + +IS+KI + ++ LK + + + Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYIVLVPFSDR-ISISQKIEDRAEKDRLKRLVKSI- 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G GVI+RT + E+ +D + L+ W + + + P V E N +R Sbjct: 181 TPKGFGVIVRTVAEGKKVAELDKDLQNLLGRWTAMCKKLNKAHHPTKVLGELNKASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I+V E Y + KD+++ + P IV+ ++ PIF + G+E Q+ + Sbjct: 241 DIFNDTFTGIVVDDEALYIQIKDYVQEIAPKKESIVKLHQSNVPIFEKFGVERQIKTAFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEAL IDVNSG RS + + EDTAL+ NL +A E+ARQLRLRD+ Sbjct: 301 KTVSMAKGAYLVIEHTEALHVIDVNSGNRSNKSNSQEDTALEVNLISATEVARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFID+ + +N + + L++ +K DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDLNKAENRKKLYNHLRDEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + G + + + I + + E L + + ++TH + +L + Sbjct: 421 TREENPNGNGGEEVEAPIVLVQKITQQL-EQLFKKDFKKVTLNTHPFIAAFLTKGFPSIR 479 Query: 540 VEYEARFGVSINVVIGIELADKLF 563 ++ + + + Sbjct: 480 SKWFFEHKKWVKIQPRDAYTYLEY 503 >gi|134093809|ref|YP_001098884.1| RNase G [Herminiimonas arsenicoxydans] gi|133737712|emb|CAL60757.1| RNase G (ribonuclease G) [Herminiimonas arsenicoxydans] Length = 487 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 114/397 (28%), Positives = 205/397 (51%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I+ ++ + Q + VQ++K+ G KGA ++T +S+AGR V +P S R Sbjct: 88 PIERILFDGQSITVQVIKDPIGTKGARLSTQISIAGRMLVYLPQESHIGISQRIENEVER 147 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 +++ + ++ G I+RT + +++ D +YL + W N+ +LA AP L+ Sbjct: 148 ELLREKVQKLMQEGEKGGFIIRTMAEDASDHDLQMDVDYLRKTWSNITQLAKTKPAPSLL 207 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 Y++ +L +R +RD + + I V + +++ + F +L PS + Y P+F Sbjct: 208 YQDLDLAQRVMRDFVNDETASIQVDSRENFQKLQQFGELYTPSVLTKLAHYPGERPLFDL 267 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 G+E ++ V L S GY+I++QTEA+ +IDVN+G +DT +TNLEA+ Sbjct: 268 YGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEASH 327 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 IARQLRLR+L G++++DFIDME ++ +V +L +L +DR +V V S GL+EM+ Sbjct: 328 AIARQLRLRNLGGMVILDFIDMENVEHRNAVLSELNRALARDRTKVSVSGFSALGLVEMT 387 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+R R S+ + C C G G +++ ++ ILR + Q+ + V+ Sbjct: 388 RKRTRESLAHILCEPCPACGGKGQVKTARTICYEILRELTREAKQFNPREFRILASQVVI 447 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L ++ + G I++ + + + + Sbjct: 448 DMFLEEESQHLAMLGDFLGKPISLQVEAVYHQEQYDV 484 >gi|319944365|ref|ZP_08018639.1| ribonuclease G [Lautropia mirabilis ATCC 51599] gi|319742326|gb|EFV94739.1| ribonuclease G [Lautropia mirabilis ATCC 51599] Length = 508 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 119/424 (28%), Positives = 199/424 (46%), Gaps = 14/424 (3%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + I++++ Q LLVQ++K+ G+KGA +TT +S+AGR V +P+ Sbjct: 82 DLWQCRMDGHKTTPIEKLLYPGQPLLVQVIKDPIGSKGARLTTQISIAGRMLVYLPHDPH 141 Query: 216 GETISRKITNPVDRKNLKE------IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 R + L+ + G G I+RT + D +YL Sbjct: 142 IGIAQRITDETERNRLLERVKVLAAQGHDGKASEGGGFIIRTVAEGAEDEVLMADIQYLR 201 Query: 270 RLWDNVRE--------LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 R W + E S P +Y E L +R +RD+ IIV + Sbjct: 202 RRWAQILEAAQANASGKPAGSRQPEQLYHELPLSQRVLRDMAWAGTQSIIVDDPETLATM 261 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F + MP+ +R +E +F ++ +++ V L S GY+I +QTEAL + Sbjct: 262 RTFCQTYMPNLEEKLRLHEGSRSLFDLYQVDEEVERALARRVPLKSGGYLIFDQTEALTT 321 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G +DT +TNLEA + +ARQL+LR+L G+I+VDFIDM ++ +V + Sbjct: 322 IDVNTGGYISGRNFDDTVFRTNLEATQTLARQLQLRNLGGIIIVDFIDMHSAEHRETVLQ 381 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +L++DR + V S+ GL+EM+R+R R S+ + CT C G G I++ +V Sbjct: 382 SLRSALQQDRTKTTVNGFSSLGLVEMTRKRTRDSLERMLCEPCTACHGKGTIKTARTVCY 441 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 I+R + Q+ + V+ LL+++ + G I + + A + Sbjct: 442 EIMREIAREARQFDPKEFRILASQQVIDLLLDEESPHLAILGENVGKPITLHVEPAYAQE 501 Query: 562 LFYI 565 + I Sbjct: 502 DYDI 505 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L+ + ETRV +++ ++E + + + + GNIY V RV P +Q+AF+D G Sbjct: 13 EEILVSTTSP-ETRVALIQQGVLKEFNLDRQASRGQVGNIYAGIVNRVLPGMQSAFIDIG 71 Query: 63 GNRHGFLPFLEI 74 R FL ++ Sbjct: 72 LERSAFLHVTDL 83 >gi|89256106|ref|YP_513468.1| ribonuclease E [Francisella tularensis subsp. holarctica LVS] gi|115314580|ref|YP_763303.1| ribonuclease E [Francisella tularensis subsp. holarctica OSU18] gi|167010792|ref|ZP_02275723.1| ribonuclease E [Francisella tularensis subsp. holarctica FSC200] gi|254367431|ref|ZP_04983457.1| ribonuclease E [Francisella tularensis subsp. holarctica 257] gi|254369110|ref|ZP_04985122.1| ribonuclease E [Francisella tularensis subsp. holarctica FSC022] gi|89143937|emb|CAJ79156.1| Ribonuclease E [Francisella tularensis subsp. holarctica LVS] gi|115129479|gb|ABI82666.1| ribonuclease E [Francisella tularensis subsp. holarctica OSU18] gi|134253247|gb|EBA52341.1| ribonuclease E [Francisella tularensis subsp. holarctica 257] gi|157122060|gb|EDO66200.1| ribonuclease E [Francisella tularensis subsp. holarctica FSC022] Length = 843 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 191/640 (29%), Positives = 318/640 (49%), Gaps = 12/640 (1%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE-AKD 323 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + + Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + L V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LILLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEKGSPVQALVNTGHKVGSD-----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 +++ N + + K I V ++A+ S + E Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540 Query: 619 IVSEESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + K++ ++ +++ +G+ + S ++S Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 N A + + E + S++D KK Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNKSNNDKFDKK 640 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|320102650|ref|YP_004178241.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644] gi|319749932|gb|ADV61692.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644] Length = 1473 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 169/479 (35%), Positives = 262/479 (54%), Gaps = 8/479 (1%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET-------EE 135 D +E V ++ P D E + + E Sbjct: 928 SEDDDDHDQEVEDQDHVEVEVDEERRSALARRPVDPEDEIDPELQEEIRREIEEIAVLEA 987 Query: 136 ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195 E + + ED G + + IQE+ + ++VQ++KE GNKG Sbjct: 988 EMGLRGPDGRYKRGEDRAGTVIPGSRTRGVVRPPIQEIFRRGDEVIVQVIKESIGNKGPT 1047 Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255 ++TY+S+ GRY VLMP ++ +SRKI + R+ LKEI L P +G I+RTAG Sbjct: 1048 LSTYISIPGRYLVLMPGLNRVG-VSRKINDEAQRRKLKEIMEELNPPNNLGFIVRTAGVD 1106 Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 RTK E+ RD YL+RLW + + AP ++Y+E ++I R IRD++ DI I + Sbjct: 1107 RTKKELARDMAYLLRLWKAILRRIKRTQAPAVIYQESDMITRTIRDVFSDDIDTIWIDER 1166 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + Y A++F++ +MP Y ++ YE P+F G+E ++ +H+ V LP G +II Sbjct: 1167 QAYEHAREFLQNVMPRYVDRLKLYEGKTPLFHLYGLEEEIQRIHRKHVPLPGGGSIIIEP 1226 Query: 376 TEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435 TEALV+IDVNSG E+ E TA +TNL AA+EIARQLRLRDL G+I+ DFIDM E+K+ Sbjct: 1227 TEALVAIDVNSGNFRVENDAEKTAYETNLRAAKEIARQLRLRDLGGVIINDFIDMREEKH 1286 Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 R VE+ L+E++K+DRAR +V +S FG++EM+RQRIR S+ S + C +C+G G I++ Sbjct: 1287 RRGVERALREAIKRDRARTKVLRMSQFGIIEMTRQRIRPSLKRSVYQDCPHCQGTGLIKT 1346 Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 S+++ ++R + + +++ + YL N+KR I + E ++I + Sbjct: 1347 PESLSIEVMRLLALAAHRPEVRRLVLTVSTPTAEYLANKKRKEIAQLEIEGNLTIEIRA 1405 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 45/78 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+ EE R+ V+ + +EEL E + GNIY +V +EP QAAFVD+ Sbjct: 7 KEMLINVLQSEECRIAVVENGVLEELYVERASHENYTGNIYKGRVVNIEPGFQAAFVDFS 66 Query: 63 GNRHGFLPFLEIHPDYYQ 80 R+GFL ++ P Y+Q Sbjct: 67 VGRNGFLHVSDVDPQYFQ 84 >gi|156502124|ref|YP_001428189.1| ribonuclease [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954510|ref|ZP_06559131.1| ribonuclease E [Francisella tularensis subsp. holarctica URFT1] gi|295312026|ref|ZP_06802841.1| ribonuclease E [Francisella tularensis subsp. holarctica URFT1] gi|156252727|gb|ABU61233.1| Ribonuclease, rne/rng family [Francisella tularensis subsp. holarctica FTNF002-00] Length = 843 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 191/640 (29%), Positives = 318/640 (49%), Gaps = 12/640 (1%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE-AKD 323 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + + Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + L V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LILLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEKGSPVQALVNTGHKVGSD-----SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 +++ N + + K I V ++A+ S + E Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540 Query: 619 IVSEESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + K++ ++ +++ +G+ + S ++S Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 N A + + E + S++D KK Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNKSNNDKFDKK 640 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|302772292|ref|XP_002969564.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii] gi|300163040|gb|EFJ29652.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii] Length = 517 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 139/517 (26%), Positives = 238/517 (46%), Gaps = 42/517 (8%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++ I++S R+ ++ + ++ +L E + GN+YL V ++ P + FV+ G Sbjct: 8 EIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVEIGS 67 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 +R L +H Y + + D+ +E G V N+ +EE Sbjct: 68 SRTALLEVN-MH-QYPHVFYGDK----------AQGNEEDGLRNKDGIVIDVNEEEIEET 115 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 N + + + + P R+ +K +++VQ Sbjct: 116 VDDPNGEEMEQSDGKTN------------------VKPATVLRKIGAWRKVKRGTLMVVQ 157 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KE KG +T ++LAGRY VL+P S + ++ + P Sbjct: 158 VKKEALRQKGPQLTATVALAGRYWVLVPQVSTIGVTRKINGLE---RSRLKQLARELQPP 214 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL-------NSVAPHLVYEEGNLIK 296 G G+ +RT R++ E+++D LM W ++ E A P L+ Sbjct: 215 GFGLTVRTEAVGRSREELEKDLARLMETWRSILERAEVAAAAGGKDPVPVLLQRAMGQTL 274 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R +RDL+ ++ +V + Y+E +++ + P V Y PIF +E +++ Sbjct: 275 RTVRDLFNNEVERFVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIE 334 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQL 414 V LP+ Y+++ +TEALVSIDVN G + L+ NL AA +IA +L Sbjct: 335 KSSSKRVELPNGAYLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATEL 394 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRD+ G+IVVDFIDME+ + R V +++++++++DR++V + IS FGL+EM+R R R Sbjct: 395 RLRDIGGIIVVDFIDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRARDRP 454 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 SV T C+ C G G I S I R+V++ L Sbjct: 455 SVTSRVTDSCSCCGGTGRIESVEMALSKIERAVKKIL 491 >gi|302774831|ref|XP_002970832.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii] gi|300161543|gb|EFJ28158.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii] Length = 516 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 139/517 (26%), Positives = 238/517 (46%), Gaps = 42/517 (8%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++ I++S R+ ++ + ++ +L E + GN+YL V ++ P + FV+ G Sbjct: 8 EIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVEIGS 67 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 +R L +H Y + + D+ +E G V N+ +EE Sbjct: 68 SRTALLEVN-MH-QYPHVFYGDK----------AQGNEEDGLRNKDGIVIDVNEEEIEET 115 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 N + + + + P R+ +K +++VQ Sbjct: 116 VDDPNGEEMEQSDGKTNVK------------------PATVLRKIGAWRKVKRGTLMVVQ 157 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KE KG +T ++LAGRY VL+P S + ++ + P Sbjct: 158 VKKEALRQKGPQLTATVALAGRYWVLVPQVSTIGVTRKINGLE---RSRLKQLARELQPP 214 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL-------NSVAPHLVYEEGNLIK 296 G G+ +RT R++ E+++D LM W ++ E A P L+ Sbjct: 215 GFGLTVRTEAVGRSREELEKDLARLMETWKSILERAEVAAAAGGKDPVPVLLQRAMGQTL 274 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R +RDL+ ++ +V + Y+E +++ + P V Y PIF +E +++ Sbjct: 275 RTVRDLFNNEVERFVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIE 334 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQL 414 V LP+ Y+++ +TEALVSIDVN G + L+ NL AA +IA +L Sbjct: 335 KSSSKRVELPNGAYLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATEL 394 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRD+ G+IVVDFIDME+ + R V +++++++++DR++V + IS FGL+EM+R R R Sbjct: 395 RLRDIGGIIVVDFIDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRARDRP 454 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 SV T C+ C G G I S I R+V++ L Sbjct: 455 SVTSRVTDSCSCCGGTGRIESVEMTLSKIERAVKKIL 491 >gi|114319570|ref|YP_741253.1| ribonuclease G [Alkalilimnicola ehrlichii MLHE-1] gi|114225964|gb|ABI55763.1| RNAse G [Alkalilimnicola ehrlichii MLHE-1] Length = 492 Score = 273 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 128/406 (31%), Positives = 217/406 (53%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P I E++ Q ++VQ++K+ G+KGA +TT++++ RY VL P + Sbjct: 84 EPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARLTTHITIPSRYLVLAPGSRALGVS 143 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 +R + L MG+I+RTA + ++ DF++L+RLW ++ E A Sbjct: 144 ARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQVAEEALRADFDFLLRLWQSISERA 203 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 ++ A V+E+ L RA+RDL ++ + V + Y F + +P A V Y Sbjct: 204 AHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSRENYLNVVSFCRRFLPEMAPRVEYY 263 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S G+++I+QTEA+ ++DVN+G +E+T Sbjct: 264 PGERPLFDLYNIEDEILRALNRRVPLKSGGHLVIDQTEAMTTVDVNTGAYVGHRTLEETI 323 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA+ IARQLRLR+L G+I+VDFIDM E+++ R V + L+++L+KD A+ Q+ + Sbjct: 324 FKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEEEHKRQVLRALEKALQKDHAKTQISGV 383 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C G G ++S +V+ I R + Q+ + + Sbjct: 384 SALGLVEMTRKRTRESLEHQLCESCPTCGGRGSVKSAETVSYEIFREILREARQFESRRL 443 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V ++VV LL + ++ + E G I + + F + Sbjct: 444 VVLAATEVVDLLLEDESTSLAQLEEFIGRPIELQAESLYTQEQFDV 489 >gi|260219510|emb|CBA26355.1| Ribonuclease G [Curvibacter putative symbiont of Hydra magnipapillata] Length = 491 Score = 273 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 127/399 (31%), Positives = 208/399 (52%), Gaps = 2/399 (0%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 Q I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P + T Sbjct: 92 QIPIEKQVFEGQSLMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDDHIGVSQKIPT-- 149 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 R L+ + L G G ILRT G + E+ D YL + W +++ +L Sbjct: 150 AQRDELRSRMQALAGKEGGGFILRTNGEDASDKELGDDIAYLRKAWARIKDASLRLPPQS 209 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L++++ NL++R +RDL + I V + + K F MP+ A ++ Y+ PIF Sbjct: 210 LLHQDLNLLQRVLRDLVGETTQTIRVDSREQFDALKTFGAEFMPAAAEKLQHYKGERPIF 269 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I+ ++ V L S GY+I++QTEAL ++DVN+G +DT +TNLEA Sbjct: 270 DLYSIDEEIAKALARRVELKSGGYLIVDQTEALTTVDVNTGGFVGARNFDDTIFKTNLEA 329 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+ IARQLRLR+L G+I+VDFIDM + + +V + ++ L +DR + G S GL+E Sbjct: 330 AQAIARQLRLRNLGGIIIVDFIDMAREDHREAVLAEFRKQLGRDRVKTMAGGFSQLGLVE 389 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C C+G G +++ SVA ILR + Q+T V Sbjct: 390 MTRKRTRESLAHMLCEPCPTCEGKGIVKTPRSVAYDILREILREARQFTPREFRVVASPK 449 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL+++ + G +++ +A + + I Sbjct: 450 VIELLLDEESQHLAGLSEFIGKPVSLQSEAAMAQEQYDI 488 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV ++ V+EL E ++ + GN+YL KV RV P +Q+AF+D Sbjct: 1 MQQDILINWS-PQETRVAIVEHGAVQELHVERTLERGLVGNVYLGKVARVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL ++ HP Sbjct: 60 IGLERAAFLHVADVWHP 76 >gi|110640055|ref|YP_680265.1| ribonuclease G [Cytophaga hutchinsonii ATCC 33406] gi|110282736|gb|ABG60922.1| ribonuclease G [Cytophaga hutchinsonii ATCC 33406] Length = 535 Score = 273 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 139/589 (23%), Positives = 248/589 (42%), Gaps = 62/589 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+N++ I +S + R+ ++++ R+ E FE +K G+IYL V +V P L AAF+D Sbjct: 1 MSNELFISSSQSGD-RIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P + + A+ S A + + I D + Sbjct: 60 VGYEKDAFLHYFDLGPKIKSLTKFTKNAITSASTPALLKKFEL-------EAEIKKDGKV 112 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +V N + IS +S + G VP + K + Sbjct: 113 SQVLEKGNPILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSNVVSVSKKITDKEERQR 172 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LV+++ R I R + + + L + R L Sbjct: 173 LVRLISSIRP-----------------------ENFGVIIRTVASNKEVAELDKDLRNLV 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G+ + + L+ E + +R Sbjct: 210 KTWEDGIAI-----------------------------LKKARPRDLIIGELDRTSSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + I V ++ Y + + ++K + P R+V+ ++ +F +G+E QL +L Sbjct: 241 DMLNESFDSINVDTKELYDDLRSYIKNIAPDKERLVKLHQGKTKMFESTGVEKQLKTLFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V+L GY+II TEAL IDVNSG +S E E+TAL TNLEA E+ARQLRLRD+ Sbjct: 301 KSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM+ N + + +++K +K DR++ + +S FGL++++R+R+R Sbjct: 361 GGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQTNLI 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T +VC C G G I + ++ I ++ + + NI + H + Y + Sbjct: 421 TMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQNEKNITLVLHPYIYAYFTTGYISKR 480 Query: 540 VEYEARFGVSINVVIGIELADKLFY-IEKGSPVQALVNTGHKVGSDSQA 587 ++ ++ + + L F +++G+ + + S+ Sbjct: 481 TKWFFKYFRWVKLRTDSSLGLTEFKFLDEGAQNIDMESEATTEDYRSEE 529 >gi|15837727|ref|NP_298415.1| ribonuclease G [Xylella fastidiosa 9a5c] gi|9106085|gb|AAF83935.1|AE003948_7 ribonuclease G [Xylella fastidiosa 9a5c] Length = 497 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 132/398 (33%), Positives = 220/398 (55%), Gaps = 2/398 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I E++++ Q L+VQ++KE G KGA +TT +S+ RY VL+P SK +S +I + + Sbjct: 98 PIVELLRDGQELMVQVLKEPIGTKGARLTTQISIPSRYLVLLP-QSKMVGVSLRIEDEAE 156 Query: 229 RKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 R LK + L G G I+RT ++ + D YL RLW V L Sbjct: 157 RARLKAVVTDLAAQYGDYGYIVRTNAEGQSADVLVEDIAYLSRLWGVVERRGRELPVCSL 216 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YE+ +L R++RDL KD+ +I V ++ + + + F+ MP A + Y HPIF Sbjct: 217 LYEDLSLSLRSVRDLIRKDVEKIKVDSKEAFAQLQGFVTKYMPVLADKLELYVGDHPIFD 276 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 G+E ++ ++ L S GY++I QTEA+ ++DVN+G + +E+T +TNLEAA Sbjct: 277 LYGVEDEIGRALDRQIPLKSGGYLVIEQTEAMTTVDVNTGSFVGKRTLEETVFRTNLEAA 336 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + +ARQLRLR+L G+IV+DFIDM++ ++ V + L+++L +D A+ + S GL+EM Sbjct: 337 QALARQLRLRNLGGIIVIDFIDMQDAEHRCQVLRVLEKALIRDHAKTTLYDFSPLGLVEM 396 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R S+ ++ C C G G I++ +V I R + + Q+ A ++V +V Sbjct: 397 TRKRTVESLQRQLSETCQECGGRGTIKTAETVTYEIFRDITRAVRQFDAVRLLVIASPNV 456 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V + ++ A + E EA G +I + + + Sbjct: 457 VSRMTDEDSAAVAELEAVLGKAIRFQADPHYLQEQYEV 494 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E + + + GNIY +V RV P +QAAFVD Sbjct: 1 MSEEILVNVTFG-ETRVAVVENGLLQELHIERDGCRGVVGNIYKGRVQRVMPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGMERTAFLHVNDV 73 >gi|85859580|ref|YP_461782.1| ribonuclease E [Syntrophus aciditrophicus SB] gi|85722671|gb|ABC77614.1| ribonuclease E [Syntrophus aciditrophicus SB] Length = 630 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 187/547 (34%), Positives = 291/547 (53%), Gaps = 18/547 (3%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K Q ++VQ+ +E G KGA +TTYLSL GRY VL+PN ISRKI DR+ LK Sbjct: 97 KIGQEVIVQVAREVSGRKGALLTTYLSLPGRYLVLLPNK-HSSGISRKIEAEEDRRLLKT 155 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + +++ GMG I+RTAG +RTK E+ RD+++L+RLW +++ A AP L+Y+E + Sbjct: 156 LVEQIKIDEGMGFIVRTAGINRTKQELSRDYQHLLRLWKEIQKRAETDPAPALIYQESDF 215 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 R++RD + +I EI+V + YR+ + + K + P R+++QY++ PIF + +E Q Sbjct: 216 GVRSLRDYFTSEIEEILVDDLETYRKMRAYCKAVAPRNLRMIKQYKERLPIFSQYNLEEQ 275 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + ++Q V L S G ++I+ TEA+++IDVNSGR++ + +EDTA +TNLEAAEEI RQL Sbjct: 276 IREIYQERVELKSGGSIVISPTEAMITIDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQL 335 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRDL GLIV+DFIDM ++K+ VEK K++L DRAR+Q+ IS FG+LE+SRQ+ S Sbjct: 336 RLRDLGGLIVIDFIDMTDRKHEAEVEKTFKKALTLDRARIQMSRISKFGILELSRQKKHS 395 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 ++ E + C +C G+G S ALS R +E + A+ + + ++ YLLNQ Sbjct: 396 TIQEISYTTCPFCSGSGIRPSLEYTALSAFRKIETEAAKEKANALKISVPYEIADYLLNQ 455 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 KR I E + +SI++ ++ I + + T ++ + PS Sbjct: 456 KRTDIQRIETLYDLSIHISGKADMTWDHAAISAVA---RELATETPETAEEEKPSLPVEA 512 Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + E ES+E + EE PAT+ Sbjct: 513 LRGQELEPAASGNAGESVETASGSGGPEEL--------------LPATELAKKKSRRRPR 558 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + ++ + PS + +S PPV T E + P+ + Sbjct: 559 KRRRKSEEKVEAAAAPSLPEGMDESPISPEQDVFGEILSYPPVITQESVEEHPVLSPVSQ 618 Query: 715 KTRWWKR 721 ++ K Sbjct: 619 ESDNRKE 625 Score = 110 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 50/79 (63%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + MLI+A H E+ R+ ++ D ++ E + + ++ I GNIY V +VE LQAAFV+ Sbjct: 1 MKHIMLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVN 60 Query: 61 YGGNRHGFLPFLEIHPDYY 79 +G + GFLP ++ P Y+ Sbjct: 61 FGVGKDGFLPLRDVSPAYF 79 >gi|167627660|ref|YP_001678160.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597661|gb|ABZ87659.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 890 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 189/632 (29%), Positives = 307/632 (48%), Gaps = 4/632 (0%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S ++ A D+ D+ I N ++ A I E S+ + N Sbjct: 2 KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EDKNGFLPFKEVSEYYLKDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN G ISR++ K LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPDGGGISRRVEGEDREK-LKKYLKDLNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LWD++ + P L+++E ++I R +RD +D+ EIIV ++ Y + K Sbjct: 181 FDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDVKRQ 240 Query: 325 MKL-LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + L V+ Y + PIF + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++D+AR+Q+ IS GL+E+SRQR+ SS+ ES + C C G G+I++ + AL+I Sbjct: 361 MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF 480 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +++ N + L P SE E Sbjct: 481 QMQRIWGTSYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKPISEDQSVSPKEDNKLE 540 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + + + + G S + ++ + + +N + Sbjct: 541 NKNIETTVQNNTNKTSEKQEPKKKGFFSKLLDKLTGSNEVIAVENKKPQNKQYNNKDKAQ 600 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ++ + +N++ K Sbjct: 601 KPQKSQDNRPQKDINQRDDRKANNNDRSDNKN 632 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 54/77 (70%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+LI++ EETR+ L + ++ +LD E+ ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +++GFLPF E+ +YY Sbjct: 62 EDKNGFLPFKEV-SEYY 77 >gi|152980616|ref|YP_001352227.1| ribonuclease G (RNAse G) (cytoplasmic axial filament protein) [Janthinobacterium sp. Marseille] gi|151280693|gb|ABR89103.1| ribonuclease G (RNAse G) (cytoplasmic axial filament protein) [Janthinobacterium sp. Marseille] Length = 487 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 116/410 (28%), Positives = 202/410 (49%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 I+ V+ + Q + VQ++K+ G KGA ++T +S+AGR V +P S Sbjct: 75 DARSHEGPPSSPTPIERVLYDGQAVTVQVIKDPIGTKGARLSTQISIAGRMLVYLPQESH 134 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R +++ + + G I+RT + +++ D EYL + W N+ Sbjct: 135 IGISQRIENEVEREILREKVQKLILPEEKGGFIIRTMAEDASDGDLQADVEYLRKTWANI 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A AP L+Y++ +L +R +RD + + I V + Y++ F +L PS Sbjct: 195 TQQAKTKPAPTLLYQDLDLAQRVMRDFVNDETASIQVDSRENYQKLLQFGELYTPSVLSK 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F G+E ++ V L S GY+I++QTEA+ +IDVN+G Sbjct: 255 LAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNF 314 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEA+ IARQLRLR+L G++++DFIDME ++ +V +L +L +DR +V Sbjct: 315 DDTIFKTNLEASHAIARQLRLRNLGGIMILDFIDMENPEHKSAVLNELNRALSRDRTKVS 374 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V S GL+EM+R+R R S+ + C C G G +++ ++ ILR + Q+ Sbjct: 375 VSGFSALGLVEMTRKRTRESLAHILCEPCPACSGKGQVKTARTICYEILRELTREAKQFN 434 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L ++ + G I++ + + + + Sbjct: 435 PREFRILASQVVIDMFLEEESQHLAMLGDFLGKPISLQVETVYHQEQYDV 484 >gi|302342415|ref|YP_003806944.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075] gi|301639028|gb|ADK84350.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075] Length = 636 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 172/512 (33%), Positives = 277/512 (54%), Gaps = 1/512 (0%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 + IQEV++ LLVQ+VKEE KGA++TT+ S+ G+Y VL P +SR Sbjct: 84 HNGRVNKPIQEVLRAGHELLVQVVKEETATKGASLTTFFSIPGQYMVLTPGHESQG-VSR 142 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + +R+ +KE G P G+GVI RTA R+K EI+++ + L+RLW ++++ + Sbjct: 143 KIESEAERERIKEALAGASCPEGIGVIARTAAEGRSKREIQQNLQQLLRLWLDIKKRGDS 202 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + L++ E L R +RD + D++EI+V + + + ++ ++ P ++ Y D Sbjct: 203 AKPRTLIHREEELAVRVVRDHFTSDVTEILVDDQDVFNRLQRYLAVVSPRRKTQLKLYTD 262 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P PIF +S +E Q+ S++Q V LPS G ++I+ TEALVSIDVNSGR+ IE+TAL Sbjct: 263 PRPIFQKSQLEQQILSIYQPTVPLPSGGSIVIHPTEALVSIDVNSGRNVSGKQIEETALN 322 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 N EAA E+ARQLRLRDL GL+VVDFIDM ++ N R+V K + LKKD+A++ +GAIS Sbjct: 323 VNKEAAVEVARQLRLRDLGGLVVVDFIDMRDRANQRTVRKVFADELKKDKAKITIGAISR 382 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGLLE+SRQRIR + T VC +C+G G +R+ ++ ++R++E L + V Sbjct: 383 FGLLELSRQRIRPPIDFGATMVCPHCQGRGLVRTTEAIGRGVMRALEHKLGDGDKSGLRV 442 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 ++ YL N +RA ++ E R+G+ I V+ L+ + +E+ Sbjct: 443 RVGTEAANYLQNVRRADLMRLEERYGLCIEVLADPGLSPEESRMERFEATWTPPQPAAPP 502 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + + ++ ++++ E+ + S +R+ ++ Sbjct: 503 VLQAVIEAPEEPEPEEFEEDEADGEGAVEAAAADEPAKKSSSRRRRGGRRKSAKKDAIAP 562 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 AG V + V + EP+ Sbjct: 563 AAQPQAGPAPSVEAKSIVETPVAEQSGEPTAA 594 >gi|118581418|ref|YP_902668.1| ribonuclease [Pelobacter propionicus DSM 2379] gi|118504128|gb|ABL00611.1| RNAse E [Pelobacter propionicus DSM 2379] Length = 866 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 192/613 (31%), Positives = 307/613 (50%), Gaps = 5/613 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++ + + + + E + T G++ +E A + + Sbjct: 16 PEEARVAIVHDGRLMELNIEISGKEQTKGNIYKGVVLRVEPGLQAAFVDIGRPKPGFLQ- 74 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ + + PE+ K R+ IQEV++ Q L+VQ+ K+ER NKG+A+T+YLS Sbjct: 75 MGELHPDFWQWRDDVPEEQRK---RRPRIQEVLRRGQELVVQVEKDERDNKGSALTSYLS 131 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP + ISRK+ RK LKEI G+ +P G+G I+RT RT E+ Sbjct: 132 LPGRYMVLMPGSDSSG-ISRKVEQESVRKQLKEIMAGMSIPEGIGYIVRTQAVGRTPEEL 190 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D E L+ +++ +++ A +Y + LI R IRD + DI E++V ++ + EA Sbjct: 191 QKDMENLLAMYEGIKKSATEIKGAGEIYRDKGLIIRFIRDYFSDDIDEVVVDSKEAFNEA 250 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +DF + MP ++V+ +++ P+F R IE Q+D +++ V+LPS G +II TEALVS Sbjct: 251 RDFFRETMPGCEKLVKLHKEKRPVFSRFQIEEQIDQIYEKRVSLPSGGSLIIEPTEALVS 310 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+S+ E IEDTA +TN+EAAEE+ARQLRLRDL GLI++DFIDM ++K+N VEK Sbjct: 311 IDVNSGKSSGERGIEDTAFKTNMEAAEEVARQLRLRDLGGLIMIDFIDMRDRKHNHEVEK 370 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK++LK D+ARV +G IS FG+LEMSRQRI ++ ++ C +C+G G ++S ++AL Sbjct: 371 TLKQALKMDKARVNLGRISEFGILEMSRQRIAKTLNDAIHLACPHCEGRGKVKSVEAMAL 430 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 S LR V + + +V YLLN+K+ + + E + + + V Sbjct: 431 SFLRKVHGAAAKGNVCEVHGGLPLEVAYYLLNRKKRELAQIENDYDIEVTVKGKTSFLLN 490 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +E + + +D+ + P E+ Sbjct: 491 QMELEIVKREKKRPEEPARDDADNGEATQPALAVETVAAVPQEGEPSPENGATEGGKKRK 550 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + + Q + + E ++ E Sbjct: 551 RRRKKKKSATEGTAIPGQTEAESATEQSEEEHPLDQAPGEPTAARQAEEHEVPGAPAEEQ 610 Query: 682 GAHGFTENYDVSI 694 TE + Sbjct: 611 TDEVTTEPTEEGE 623 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 116/750 (15%), Positives = 213/750 (28%), Gaps = 89/750 (11%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 + KMLI+ H EE RV ++ D R+ EL+ E K+Q KGNIY V RVEP LQAAFVD Sbjct: 6 SKKMLINVMHPEEARVAIVHDGRLMELNIEISGKEQTKGNIYKGVVLRVEPGLQAAFVDI 65 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G + GFL E+HPD++Q R + +E + + V V + D Sbjct: 66 GRPKPGFLQMGELHPDFWQW----RDDVPEEQRKRRPRIQEVLRRGQELVVQVEKDERDN 121 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + + + ++ ++ +D V+ S K+ I + Sbjct: 122 KGSALTSYLSLPGRYMVLMPGSDSSGISRKVEQESVRKQLKEIMAGMSI----PEGIGYI 177 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 V+ A T L L+ + + +I + K + Sbjct: 178 VRTQ--------AVGRTPEELQKDMENLLAMYEGIKKSATEIKGAGEIYRDKGLI----- 224 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL-NSVAPHLVYEEGNLIKRAIR 300 +R + + E D RE L E+ + R Sbjct: 225 ----IRFIRDYFSDDIDEVVVDSKEAFNEARDFFRETMPGCEKLVKLHKEKRPVFSRFQI 280 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + I E VS G + + L+ + + ++ Sbjct: 281 EEQIDQIYEKRVSLPSGGSLIIEPTEALVSIDVNSGKSSGERGIEDTAFKTNMEAAEEVA 340 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 ++ L G L+ ID R+ +T +A + ++ L ++ Sbjct: 341 RQLRLRDLG--------GLIMIDF---IDMRDRKHNHEVEKTLKQALKMDKARVNLGRIS 389 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 +++ M ++ +++ + + R +V ++ L R+ ++ + Sbjct: 390 EFGILE---MSRQRIAKTLNDAIHLACPHCEGRGKVKSVEAMAL-SFLRKVHGAA---AK 442 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 VC G + R E ++I V L + + Sbjct: 443 GNVCEVHGG----LPLEVAYYLLNRKKRELAQIENDYDIEVTVKGKTSFLLNQMELEIVK 498 Query: 541 EYEARFGVSINVVIGI-ELADKLFYIEKGSPVQAL------------------------- 574 + R E +E + V Sbjct: 499 REKKRPEEPARDDADNGEATQPALAVETVAAVPQEGEPSPENGATEGGKKRKRRRKKKKS 558 Query: 575 -----------VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 S+ + P E +A E+ D + +E Sbjct: 559 ATEGTAIPGQTEAESATEQSEEEHPLDQAPGEPTAARQAEEHEVPGAPAEEQTDEVTTEP 618 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + ++ S D EP ++ L Sbjct: 619 TEEGEAAAAP----KKRRRRRSRKVSKGAEESATAEESDETASAAEPLEVAPAELAAPAE 674 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 E T +E+ + S P Sbjct: 675 PPAGETATEQPQAPETVPLETRSFESGPQE 704 >gi|120554794|ref|YP_959145.1| ribonuclease [Marinobacter aquaeolei VT8] gi|120324643|gb|ABM18958.1| RNAse E [Marinobacter aquaeolei VT8] Length = 1056 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 206/611 (33%), Positives = 313/611 (51%), Gaps = 41/611 (6%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ + P + + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VL Sbjct: 71 KEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVL 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE G++VP MG+I+RTAG RT E++ D +YL+ Sbjct: 131 MPNNPRAGGISRRIEGDDRAQ-LKEAMNGVQVPKSMGIIVRTAGIGRTTEELQWDLDYLV 189 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + W+ + + A AP L+++E N+I RA+RD +DI E+++ + Y + F++ +M Sbjct: 190 QFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYEDVLSFVRAVM 249 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P++ ++ Y+D P+F R IE Q+++ Q EV LPS G ++I+ TEALVSID+NS R+ Sbjct: 250 PTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRA 309 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 T+ IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM K+ R VE+K++E+L+ Sbjct: 310 TKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEL 369 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRARVQVG IS FGLLEMSRQR+R S+ E+ ++VC C+G G IR S+ALSI+R + E Sbjct: 370 DRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYE 429 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + V +LLN+KR + + EAR GV++ V + F I + Sbjct: 430 ESSKEKTAEVRAMVPVSVATFLLNEKRKQLADIEARQGVAVVVAPVPNMETPHFEILRLR 489 Query: 570 PVQALVNTGHKVGSDSQ--------APSYDKNIECVWQDEALLPIPKSESLEDI------ 615 + Q A + V + A+ I S Sbjct: 490 QDETSPEHVSSHQVAQQYSEREEEAAVEVASAEKPVREQAAVKAIRPSAPAPAPTAAAPT 549 Query: 616 ---------------------QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + +E++ + R RR + D + V D Sbjct: 550 AAAEQEEGLFRKLGKKIACFFRGEEPEQEASHDTNRNRSEERRNQARQDRRKSRVARDDQ 609 Query: 655 SIQNVIDDSFDMYMEPS-----DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 S + + E + +S + + Sbjct: 610 RTGGNRSGSDRRQGSQQNRGDDNRGRNRGGRGDDQNRGERGGQNRSNRDDRSGDSKGNDN 669 Query: 710 DPIVKKTRWWK 720 +K + Sbjct: 670 RRDNRKDSQGR 680 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 41/78 (52%), Positives = 57/78 (73%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+H EE RV ++ R+ +LD ES ++Q K NIY ++TRVEPSL+AAFVD+G Sbjct: 2 KRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 63 GNRHGFLPFLEIHPDYYQ 80 RHGFLP EI +Y++ Sbjct: 62 AERHGFLPLKEISKEYFK 79 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 28/151 (18%), Gaps = 1/151 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + N + + + + + N Sbjct: 660 RSGDSKGNDNRRDNRKDSQGRGQNRNRPQRDQKGPQDNREQQESQKGPSNDKQGGDDKQR 719 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + RR+R R PA + D+ E Sbjct: 720 KPRRQRNRDGSPAETPASTPAERKAERSEKHQKDTQPEKAADKTAPVDAKASEPRVDKAE 779 Query: 689 NYDVSIPPVST-PEMESSNSSSDPIVKKTRW 718 + P T PE +T+ Sbjct: 780 QPAATTPETKTAPESRKPEQQEMAEKPETKT 810 Score = 37.6 bits (85), Expect = 8.4, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 47/148 (31%), Gaps = 2/148 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 ++ + G+ D++ S + + ++ Q +++ G Sbjct: 656 NRDDRSGDSKGNDNRRDNRKDSQGRGQNRNRPQRDQKGPQDNREQQESQKGPSNDKQGGD 715 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++R+ RR+R R + + D E + + + Sbjct: 716 DKQRKPRRQRNRDGSPAETPASTPAERKAERSEKHQKDTQPEKAADKTAPVDAKASEPRV 775 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + P +TPE +++ S P ++ Sbjct: 776 DK--AEQPAATTPETKTAPESRKPEQQE 801 >gi|222055040|ref|YP_002537402.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32] gi|221564329|gb|ACM20301.1| ribonuclease, Rne/Rng family [Geobacter sp. FRC-32] Length = 777 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 192/502 (38%), Positives = 293/502 (58%), Gaps = 5/502 (0%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R A++++ ++ + D E + T G+V +E A F ++ ++ Sbjct: 16 RVAIVEDGHLVELDIEIAGSEQTRGNVYKGVVVRVE-PGLQAAFVDIGHKKLGFLQMGEI 74 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + PE+ R+ IQE+++ Q L+VQ+ K ER NKGAA+TTY+SL GR Sbjct: 75 HPENWQWRDDVPEEQRN---RRPRIQEILRRGQELIVQVEKGERDNKGAALTTYISLPGR 131 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMP S ISRK+ + +RK LKE+ LE+P G+G I+RT RTK E+ +D Sbjct: 132 YMVLMPG-SDSAGISRKVESESERKKLKEMVADLEIPEGIGYIMRTEAMGRTKTELAKDL 190 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 +YL++L+ ++RE L+Y+E +L+ R IRD + +I E++V + Y++A+ F Sbjct: 191 QYLVKLYSSIREKGAELKGAGLIYQESDLVIRTIRDYFNAEIDEVLVDSKDVYKQARAFF 250 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 K MP Y ++V+ +++ PIF R +E Q+D +++ +V L S G + I TEALVSIDVN Sbjct: 251 KETMPKYEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVSIDVN 310 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 SG+ST E +EDTA +TNLEAA E ARQLRLRDL GLIV+DFIDM E+K+N VEK LK Sbjct: 311 SGKSTGEKGVEDTAFKTNLEAAAEAARQLRLRDLGGLIVIDFIDMRERKHNNEVEKALKT 370 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 +LK D+ARV VG IS FGLLEMSRQRI+ ++ ++++ C +C+G G ++S ++A+S LR Sbjct: 371 ALKGDKARVTVGKISQFGLLEMSRQRIKQTINQASSLECPHCEGRGKVKSVEAMAVSFLR 430 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V + T + +V +LLN+K+ + + E + + + V + Sbjct: 431 KVHAAAAKGTVAEVRGGLPLEVAYFLLNRKKRELAQIETDYDLDVTVKGKPSFLLNQIEL 490 Query: 566 EKGSPVQALVNTGHKVGSDSQA 587 E + ++A Sbjct: 491 ELIKREKPFTEEIAPEVPTTEA 512 >gi|222110912|ref|YP_002553176.1| Rne/Rng family ribonuclease [Acidovorax ebreus TPSY] gi|221730356|gb|ACM33176.1| ribonuclease, Rne/Rng family [Acidovorax ebreus TPSY] Length = 495 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 129/424 (30%), Positives = 209/424 (49%), Gaps = 2/424 (0%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V +GG +K + I++ I Q L+VQ++K+ G+KGA ++T +S+A Sbjct: 69 HVADVWHRQEGGEAPMFARKNEPPVPIEKQIFEGQALMVQVIKDPIGSKGARLSTQISIA 128 Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 GR V +P + R L+++ + G ILRT G + E+ Sbjct: 129 GRLLVFLPQDDHVGVSQKIPQAERDALRTRLQKLVDDQASGSSGGFILRTNGEDASDEEL 188 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 D YL + W +R+ AL L+Y++ +L++R +RDL + I + + + Sbjct: 189 AEDIAYLRKTWAGIRQAALTHPPTSLLYQDLSLLQRVLRDLAGEQTQSIRIDSREQFVAL 248 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F MP+ A ++ Y+ PIF I+ ++ V L S GY+I++QTEAL + Sbjct: 249 KAFGNEFMPAAAAKLQLYKGERPIFDLYSIDEEIALALGRRVQLKSGGYLIVDQTEALTT 308 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G +DT +TNLEAA IARQLRLR+L G+++ DFIDM + + +V Sbjct: 309 IDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAVLA 368 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + ++ L +DR + VG S GL+EM+R+R R S+ + C C+GAG +++ SV Sbjct: 369 EFRKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCQGAGQVKTARSVCY 428 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR V Q+ V VV L+++ + G I++ + Sbjct: 429 DILREVLREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQAESAMGQA 488 Query: 562 LFYI 565 + I Sbjct: 489 QYDI 492 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ + V+EL E ++ + GN+YL KV+RV P +Q+AF+D Sbjct: 1 MQQDILINWS-PQETRVAVVENGAVQELHVERTLERGLVGNVYLGKVSRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 IGLERAAFLHVADV 73 >gi|89093938|ref|ZP_01166883.1| cytoplasmic axial filament protein [Oceanospirillum sp. MED92] gi|89081824|gb|EAR61051.1| cytoplasmic axial filament protein [Oceanospirillum sp. MED92] Length = 488 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 136/417 (32%), Positives = 220/417 (52%), Gaps = 2/417 (0%) Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 V+ P++ + K I +V++ Q LLVQ+ K+ G KGA +TT+LSL RY V M Sbjct: 69 HVEEVLPQNASHEEKNNTSIAQVLREGQALLVQVTKDPIGTKGARLTTHLSLPSRYLVCM 128 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM--GVILRTAGASRTKIEIKRDFEYL 268 S R + + ++ G G ILRT + E+K D ++L Sbjct: 129 LGNSHVGVSQRIEDLEERDRLRNIVHSLIKEEDGEPAGFILRTVAEGAAEAELKADIQFL 188 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 RLW +++E + AP +VYE+ L RA+RD+ + I + + +++A+ F++ L Sbjct: 189 RRLWASIKEKISTAKAPSIVYEDLPLNMRALRDMAHSGLERIRIDSRETFQKAEAFVRDL 248 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 +P + Y PIF +E ++ +V L S GY+I +QTEA+ ++DVN+G Sbjct: 249 VPEVTDTLEYYPGERPIFDLFNVEEEIQKALGRKVELKSGGYLIFDQTEAMTTVDVNTGA 308 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +E+T +TNLEAA I RQLRLR+L G+I++DFIDME+ + R V + L+ L+ Sbjct: 309 FVGHRNLEETIFKTNLEAATAIGRQLRLRNLGGIIILDFIDMEDPDHQRQVLRTLERVLE 368 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 +D A+ +V +S+ GL+EM+R+R R S+ + VC+ C+G G I++ +V I R + Sbjct: 369 RDHAKCKVMGVSDLGLVEMTRKRTRESLEQVLCDVCSECQGRGSIKTPETVCYEIFREIL 428 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V VV YLL+ + E EA G +I + + F + Sbjct: 429 RQHRAYDTDSYLVLAAQPVVDYLLDDASNHVAELEAFIGKTIRFQVEPMYNAESFDV 485 >gi|326316870|ref|YP_004234542.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373706|gb|ADX45975.1| ribonuclease, Rne/Rng family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 495 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 125/424 (29%), Positives = 212/424 (50%), Gaps = 2/424 (0%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V +GG +K + I++ + Q L+VQ++K+ G KGA ++T +S+A Sbjct: 69 HVADVWHRQEGGEAPMFARKGEPPVPIEKQVFEGQALMVQVIKDPIGTKGARLSTQVSIA 128 Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 GR V +P + R L+ + G G ILRT G + E+ Sbjct: 129 GRLLVFLPQDDHVGVSQKIPAAERDALRARLQALVGDKATGGGGGFILRTNGEDSSDAEL 188 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 D YL + W ++E A+ L++++ NL++R +RDL ++ + I + + + Sbjct: 189 AEDIAYLRKTWARIKEAAMRQPPASLLHQDLNLLQRVLRDLVGEETASIRIDSREQFALL 248 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F + P+ ++ Y+ PIF GI+ ++ V L S GY+I++QTEAL + Sbjct: 249 QAFGREFTPAAVPKLQLYKGERPIFDLYGIDEEIARALGRRVDLKSGGYLIVDQTEALTT 308 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G +DT +TNLEAA+ IARQLRLR+L G+I+ DFIDM + + +V Sbjct: 309 IDVNTGGYVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIADFIDMAREDHQHAVLA 368 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + ++ L +DR + G S GL+EM+R+R R S+ + C +C+G+G +++ SV Sbjct: 369 EFRKQLARDRVKTMTGGFSQLGLVEMTRKRTRESLAHMLCEPCAHCQGSGQVKTARSVCY 428 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR + Q+ V + VV L+++ + G I++ L + Sbjct: 429 DILREILREARQFNPREFRVVASAKVVELFLDEESQHLAGLSDFIGKPISLQAESGLGQE 488 Query: 562 LFYI 565 + I Sbjct: 489 QYDI 492 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ V+EL E ++ + GN+YL KV+RV P +Q+AF+D Sbjct: 1 MQQDILINWS-PQETRVAVVEHGAVQELHVERTLEQGLVGNVYLGKVSRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 IGLERAAFLHVADV 73 >gi|241668232|ref|ZP_04755810.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876767|ref|ZP_05249477.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842788|gb|EET21202.1| ribonuclease E [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 890 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 189/632 (29%), Positives = 306/632 (48%), Gaps = 4/632 (0%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S ++ A D+ D+ I N ++ A I E S+ + N Sbjct: 2 KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EDKNGFLPFKEVSEYYLKDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN G ISR++ K LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPDGGGISRRVEGEDREK-LKKYLKDLNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LWD++ + P L+++E ++I R +RD +D+ EIIV ++ Y + K Sbjct: 181 FDTLVELWDSIFKAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDVKRQ 240 Query: 325 MKL-LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + L V+ Y + PIF + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++D+AR+Q+ IS GL+E+SRQR+ SS+ ES + C C G G+I++ + AL+I Sbjct: 361 MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF 480 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +++ N + L P SE E Sbjct: 481 QMQRIWGTSYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKPISEDQSVSPKEDNKLE 540 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + + + G S + ++ + + +N + Sbjct: 541 NKNIETTVQNNTNETSEKQEPKKKGFFSKLLDKLTGSNEVIAVENKKPQNKQYNNKDKAQ 600 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ++ + +N++ K Sbjct: 601 KPQKSQDNRPQKDINQRDDRKANNNDRSDNKN 632 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 54/77 (70%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+LI++ EETR+ L + ++ +LD E+ ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 +++GFLPF E+ +YY Sbjct: 62 EDKNGFLPFKEV-SEYY 77 >gi|228474009|ref|ZP_04058750.1| ribonuclease, Rne/Rng family [Capnocytophaga gingivalis ATCC 33624] gi|228274523|gb|EEK13364.1| ribonuclease, Rne/Rng family [Capnocytophaga gingivalis ATCC 33624] Length = 513 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 148/569 (26%), Positives = 251/569 (44%), Gaps = 70/569 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S + +L++ R+ EL E + G+I LAK+ + L AAFV+ Sbjct: 1 MTKELII-RSGASDVDFALLKNGRLVELHKEEDANGLSVGDIMLAKIHKPIQGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P LL + S D + D D + Sbjct: 60 VGYEKDAFLHYHDLGPQ-----------LLSLLKFIKEVSSGKIKDYSLKDFKQEPDIN- 107 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + I EV+K Q + Sbjct: 108 ---------------------------------------------KNGAISEVLKAGQPI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +++ LS+AGRY VL+P + + +IS+KI + +++ LK I + ++ Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYLVLVPFSER-ISISQKIESKAEKERLKRIVQSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G GVI+RT + ++ +D + W + + P + E N +R Sbjct: 182 PK-GFGVIIRTVAQDKKVADLDKDLQNSFERWIQMCKKIAQGTFPSKILSEMNRTGALLR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I V E Y + +D+++ + P IV+ Y+ PIF + IE Q+ + Sbjct: 241 DMFDDSFTGIHVDNESLYTQIRDYLQEIAPDKLNIVKLYKSSVPIFEKFHIERQIKTGLG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEAL IDVNSG + + E TA + NL AA EIARQLRLRD+ Sbjct: 301 RTVSMTKGAYLVIEHTEALHVIDVNSGNHSNKAENQETTAFEVNLIAATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM +N + + L+E +K DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMSNGENRQKLFDALREEMKDDRAKHKILPPSKFGLIQITRQRVRPEINIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILR----SVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 T + + + I R E I ++ H + YL Sbjct: 421 TKEENPS-----KLDEVDAPITLIERMTTDLEEIIYQSNYNGRITLNLHPFIAAYLTKGI 475 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFY 564 + ++ ++ ++++ + + Sbjct: 476 FSIRFKWFLKYKRWVSILPRDAYSYLEYR 504 >gi|86147835|ref|ZP_01066141.1| Ribonuclease G and E [Vibrio sp. MED222] gi|218708385|ref|YP_002416006.1| ribonuclease G [Vibrio splendidus LGP32] gi|85834362|gb|EAQ52514.1| Ribonuclease G and E [Vibrio sp. MED222] gi|218321404|emb|CAV17354.1| Ribonuclease G [Vibrio splendidus LGP32] Length = 489 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 120/565 (21%), Positives = 209/565 (36%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGALQEIHVERDARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + E+ Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAENEKKQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E + K+ I+ Sbjct: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIDSESERNRLKKVVSRYCDEHGGFII 170 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + + + LE Sbjct: 171 RTAAEGADSNELA--------------------------------QDAAFLKRLWLKVLE 198 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 R G I RDF + Sbjct: 199 RRGKHKARTRLYGELCLSQRILRDF---------------------------------VG 225 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K + + E +++ L + I+ LD Sbjct: 226 TELSKIQVDSRLEYENLKEFTSEYVPELTDKLELYEGDKPIFDMYDTENEIQRSLDR--- 282 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+QTEA+ ++D+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 283 -KVELKSGGYLIIDQTEAMTTVDINTGAFVGRRNLEETIFNTNVEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM +++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMLSEEHRKRVLTSLEAALDKDRVKTNINGFTQLGLVEMTRKRTRESIEHIL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ + V L ++ + Sbjct: 402 CSSCPACEGRGSVKTVETVCYEILREITRVNRAYDADKFVVYAAAAVAEALEGEESHALA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKQVKIQAEPLYIQEQFDV 486 >gi|120611855|ref|YP_971533.1| ribonuclease G [Acidovorax citrulli AAC00-1] gi|120590319|gb|ABM33759.1| RNAse G [Acidovorax citrulli AAC00-1] Length = 517 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 125/424 (29%), Positives = 211/424 (49%), Gaps = 2/424 (0%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V +GG +K + I++ + Q L+VQ++K+ G KGA ++T +S+A Sbjct: 91 HVADVWHRQEGGEAPMFARKGEPPLPIEKQVFEGQALMVQVIKDPIGTKGARLSTQISIA 150 Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 GR V +P + R L+ + G G ILRT G + E+ Sbjct: 151 GRLLVFLPQDDHVGVSQKIPAAERDALRARLQALVGDKATGGGGGFILRTNGEDSSDAEL 210 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 D YL + W ++E A+ L++++ NL++R +RDL ++ + I + + + Sbjct: 211 AEDTAYLRKTWARIKEAAMRQPPASLLHQDLNLLQRVLRDLVGEETASIRIDSREQFALL 270 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F + P+ ++ Y+ PIF GI+ ++ V L S GY+I++QTEAL + Sbjct: 271 QAFGREFTPAAVPKLQLYKGERPIFDLYGIDEEIARALGRRVDLKSGGYLIVDQTEALTT 330 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G +DT +TNLEAA+ IARQLRLR+L G+I+ DFIDM + + +V Sbjct: 331 IDVNTGGYVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIADFIDMAREDHQHAVLA 390 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + ++ L +DR + G S GL+EM+R+R R S+ + C +C+G G +++ SV Sbjct: 391 EFRKQLARDRVKTMTGGFSQLGLVEMTRKRTRESLAHMLCEPCAHCQGKGSVKTARSVCY 450 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR + Q+ V + VV L+++ + G I++ L + Sbjct: 451 DILREILREARQFNPREFRVVASAKVVELFLDEESQHLAGLSDFIGKPISLQAESGLGQE 510 Query: 562 LFYI 565 + I Sbjct: 511 QYDI 514 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ V+EL E ++ + GN+YL KV+RV P +Q+AF+D Sbjct: 23 MQQDILINWS-PQETRVAVVEHGAVQELHVERTLEQGLVGNVYLGKVSRVLPGMQSAFID 81 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 82 IGLERAAFLHVADV 95 >gi|29346910|ref|NP_810413.1| ribonuclease G [Bacteroides thetaiotaomicron VPI-5482] gi|253572375|ref|ZP_04849778.1| ribonuclease G [Bacteroides sp. 1_1_6] gi|298386443|ref|ZP_06995999.1| ribonuclease G [Bacteroides sp. 1_1_14] gi|29338808|gb|AAO76607.1| Ribonuclease G [Bacteroides thetaiotaomicron VPI-5482] gi|251838150|gb|EES66238.1| ribonuclease G [Bacteroides sp. 1_1_6] gi|298260820|gb|EFI03688.1| ribonuclease G [Bacteroides sp. 1_1_14] Length = 524 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 131/580 (22%), Positives = 242/580 (41%), Gaps = 62/580 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D + EL E + GN+YL ++ ++ P L A FVD Sbjct: 1 MTSEIVIDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + + + +K++ + +++ D+ D ++ Sbjct: 60 VGYEKDAFLHYLDLGPQF-----NSLEKFVKQTLSDKKKLNSISKATLLPDLD--KDGTV 112 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + IS +++ G +P K + + Sbjct: 113 ANTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERAR 172 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L Q+ + P I R + L + L Sbjct: 173 LKQL---------------------LMSIKP--KNFGVIVRTVAEGKRVAELDGELKVLI 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE-GNLIKRAI 299 + + + E + + Sbjct: 210 KHWE-----------------------------DAMAKVQKATKYPTLIYEETSRAVGLL 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E Y E KD++ L+ P A IV+ Y+ PI+ GI Q+ S Sbjct: 241 RDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDNFGITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 V+ S Y+II TEAL +DVNSG T+ ++ AL+ NL AA+E+ARQLRLRD Sbjct: 301 GKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM E +N + + +++ +++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 +TT++C C G G I+S ++ ++ + + +H H V ++ + Sbjct: 421 NTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHVHPYVAAFINQGLVSL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 +++ ++G I ++ +LA + + + Sbjct: 481 RRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520 >gi|196231911|ref|ZP_03130767.1| ribonuclease, Rne/Rng family [Chthoniobacter flavus Ellin428] gi|196224033|gb|EDY18547.1| ribonuclease, Rne/Rng family [Chthoniobacter flavus Ellin428] Length = 524 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 156/496 (31%), Positives = 258/496 (52%), Gaps = 6/496 (1%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R ALL+ + + E D G + ++E E+ + + + + Sbjct: 30 RVALLEGGVLEEYSIERETDRNIVGSIFKGRVKNIEHGLKAMFVDIGFEKNAFLHFWDAL 89 Query: 146 VSNVEDVKGGSPEDVPKKFKRQ---YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 + ++ +K ++ I ++ +LVQ+ K KG +TT LSL Sbjct: 90 PAALDSGVEQVERSSGRKENKRITAQDIPKIYPVGSEVLVQVTKGPISTKGPRITTNLSL 149 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRY VLMP + + ISRKI +P +R L++I + L++P MGVI+RT G + Sbjct: 150 AGRYLVLMPYSDQCG-ISRKIESPKERDRLRKILKELDIPENMGVIVRTVGEGQRARYFV 208 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 RD L+ W + + AP V++E +LI+R +RD +I E+I E + Sbjct: 209 RDLGLLVEQWRAIEQAMKEKPAPACVFQEPDLIERTVRDFLTDEIDEVICDDEHAVKRMV 268 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 D + + A +R Y+D IF R G++ Q+D +V LP GY++I++TEAL++I Sbjct: 269 DVVGQISRRSAGRIRHYQDTQAIFERYGVQKQIDDAFHRQVWLPCGGYIVIDETEALIAI 328 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVN+GR+ + T LQTNLEAA+E+ARQ+RLR++ GLI+ DFIDM+ +K+ ++V + Sbjct: 329 DVNTGRNKGSGSADKTILQTNLEAADEMARQMRLRNIGGLIIGDFIDMKNRKDQQAVYSR 388 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +KE LK+D+++ V IS GL+EM+RQR S+ + + C YC G G ++S ++++ Sbjct: 389 MKERLKRDKSKTHVLPISPLGLMEMTRQRAAESISGAVFEPCPYCGGRGKVKSAMTMSVE 448 Query: 503 ILRSVEEYLLQYT--AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 + RS+ + + ++ H I V H V+ L + +VE E R+ + Sbjct: 449 LQRSLHQIMRKHQDTIHEIKVIVHPHVMQRLRTEDEELLVEIERRYAGRLTFRADPTYHH 508 Query: 561 KLFYIEKGSPVQALVN 576 + F I + Q L Sbjct: 509 EKFTIVDANTGQELKP 524 >gi|223936566|ref|ZP_03628477.1| ribonuclease, Rne/Rng family [bacterium Ellin514] gi|223894730|gb|EEF61180.1| ribonuclease, Rne/Rng family [bacterium Ellin514] Length = 640 Score = 271 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 160/497 (32%), Positives = 265/497 (53%), Gaps = 8/497 (1%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 R A+L+E + + E ++ G + +LE+ A E+ + + + Sbjct: 143 ETRVAVLEEGKLEEFTIERTTEERLVGSIFKGKVRNLEDGLKAAFVDIGFEKNAFLHYWD 202 Query: 144 DVVSNVE---DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 V SN + +V + K Q I + ++VQ+ K G KG VTT L Sbjct: 203 IVPSNFDSGVEVVERETKKRDKPRITQKDIPRLYPPGSDIIVQVTKGPIGTKGPRVTTNL 262 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 L GRY VL+PN+ + ISRKI N +R+ LK+I R L +P GMGVI+RT G + Sbjct: 263 VLPGRYLVLLPNSDQSG-ISRKIENQQERQRLKKILRTLNIPDGMGVIIRTVGEGQQLRY 321 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 RD L+ W+ +++ N + V++E +LI+R +RD +D+ I+V K Y Sbjct: 322 FVRDLALLIEEWNLIQDRIKNQPSATCVFQEPDLIERTVRDFLTEDVERIVVDNPKAYDR 381 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 ++ + + A V+ Y D +F R I QL++ +V L S GY+++++TEALV Sbjct: 382 MREMISKISRRSASKVKLYGDSQAVFDRFNISKQLENAFSRQVHLKSGGYIVVDETEALV 441 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVN+GR E L+ N+EAA+EI+RQLRLR++ GLIV+DFIDM+ +++ +SV Sbjct: 442 AIDVNTGRHKGGKDQETAILKVNIEAADEISRQLRLRNMGGLIVLDFIDMKSRRDQQSVY 501 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 +++K+ L++D+A+ + IS GL+EM+RQR SV + + C YCKG G ++S +++ Sbjct: 502 QRMKDGLRRDKAKTHILPISQLGLMEMTRQRHSESVHAAVYEECPYCKGRGKVKSALTMS 561 Query: 501 LSILRSVEEYLLQYTAHN----IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 + I R + E L + + + + H V+ L N+ ++E E R+ ++ Sbjct: 562 VEIQRKLSEILKRRSRDESDFQLRIVVHPSVLERLRNEDEKHLIEMEKRYFGKLSFRAEP 621 Query: 557 ELADKLFYIEKGSPVQA 573 L +LF I + + Sbjct: 622 SLHAELFKIVNVANGEE 638 >gi|90022830|ref|YP_528657.1| RNAse G [Saccharophagus degradans 2-40] gi|89952430|gb|ABD82445.1| RNAse G [Saccharophagus degradans 2-40] Length = 492 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 222/414 (53%), Gaps = 6/414 (1%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 PE + + I+EV++ Q LLVQ+ K+ G KGA +TT LS++ RY V MPNT Sbjct: 77 PEGAESRPRSDIDIREVVREGQELLVQVTKDPIGTKGARLTTQLSVSARYLVYMPNTPHI 136 Query: 217 ETISRKITNPVDRKNLKEIARGL-----EVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 IS +I + +R+ L+ I L E G I+RT T+ E++ D ++ L Sbjct: 137 G-ISNRIEDAEERERLRTIVEKLAAEHAEEFPDGGFIIRTVAEGATEEEMRADIPFVYHL 195 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++ + + AP ++YE+ L R IRD +I ++ + + Y F K P Sbjct: 196 WHDLADSVKKAKAPSIIYEDLPLFMRTIRDFMRSNIEKVRIDSRESYARMDKFAKHYAPE 255 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + Y P+F G+E ++ +V L S GY+++ QTEA+ +IDVN+G Sbjct: 256 IGGRLEHYPGERPLFDLYGVEEEIQRALDKKVVLKSGGYLVVEQTEAMSTIDVNTGAFVG 315 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T +TNLEAA IARQLRLR+L G+I++DFIDM +K++ R V + L++ L+KDR Sbjct: 316 SRNLEETIFKTNLEAAAAIARQLRLRNLGGIIILDFIDMLDKEHQRQVLRTLEKCLEKDR 375 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 A+ + +S GL+EM+R+R R S+ ++ + C C+G G ++S +V I R + Sbjct: 376 AKTSITGVSELGLVEMTRKRTRESLGQAMCESCPVCRGRGILKSPETVCYEIFREILRDA 435 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V V+ LL+++ A + + E+ G +I + + + I Sbjct: 436 RAYENEKFMVLASQVVIDLLLDEESANVADLESFIGRTIEFRVETVYNQEQYDI 489 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++L++ ETRV ++ + ++E+ E K GNIY KV RV P +QAAFVD Sbjct: 1 MTDEILVN-CGPTETRVALVENGVLQEVYLERTRAKGFVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R GF+ +I Sbjct: 60 IGQERAGFIHVSDI 73 >gi|319762854|ref|YP_004126791.1| ribonuclease, rne/rng family [Alicycliphilus denitrificans BC] gi|330824933|ref|YP_004388236.1| Rne/Rng family ribonuclease [Alicycliphilus denitrificans K601] gi|317117415|gb|ADU99903.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans BC] gi|329310305|gb|AEB84720.1| ribonuclease, Rne/Rng family [Alicycliphilus denitrificans K601] Length = 495 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 6/426 (1%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V + +GG +K + I++ + Q L+VQ++K+ G+KGA ++T +S+A Sbjct: 69 HVADVWQRQEGGEAPMFARKNEPPVPIEKQVFEGQSLMVQVIKDPIGSKGARLSTQISIA 128 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG----VILRTAGASRTKI 259 GR V +P + +R L+ + L G ILRT G + Sbjct: 129 GRLLVFLPQDDHIGISQKIP--QEERDALRARLQALAGDKSTGGGGGFILRTNGEDASDA 186 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E+ D YL + W +R+ AL+ L+Y++ NL++R +RDL ++ I + + + Sbjct: 187 ELAEDIAYLRKTWAGIRQAALSRPPTSLLYQDLNLLQRVLRDLVGEETQSIRLDSREQFA 246 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 + F + MP+ ++ Y+ PIF I+ ++ V L S GY+I++QTEAL Sbjct: 247 ALQKFGRDFMPAAVAKLQLYKGERPIFDLYAIDEEIARALGRRVDLKSGGYLIVDQTEAL 306 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +IDVN+G +DT +TNLEAA IARQLRLR+L G+++ DFIDM + + +V Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAGAIARQLRLRNLGGIVIADFIDMLREDHQAAV 366 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + K+ L +DR + VG S GL+EM+R+R R S+ + C C G G +++ +V Sbjct: 367 LAEFKKQLARDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCPTCHGVGEVKTARTV 426 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 ILR V Q+ V VV L+++ + G I++ + Sbjct: 427 CYDILREVLREARQFNPREFRVIASPKVVELFLDEESQHLAGLSDFIGKPISLQAETAVG 486 Query: 560 DKLFYI 565 + + I Sbjct: 487 PEEYDI 492 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ + V+EL E ++ + GN+YL KV+RV P +Q+AF+D Sbjct: 1 MQQDILINWS-PQETRVAVVENGAVQELHVERALERGLVGNVYLGKVSRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 IGLERAAFLHVADV 73 >gi|254515285|ref|ZP_05127346.1| hypothetical protein NOR53_1804 [gamma proteobacterium NOR5-3] gi|219677528|gb|EED33893.1| hypothetical protein NOR53_1804 [gamma proteobacterium NOR5-3] Length = 484 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 131/398 (32%), Positives = 206/398 (51%), Gaps = 2/398 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E ++ Q++ VQ++K+ KGA +T LS++ RY V MP + R Sbjct: 84 IAEHLREGQLITVQVLKDPISKKGARLTCQLSVSTRYLVYMPQSDHVGVSQRIDDVDERA 143 Query: 230 KNL--KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + E G G ILRTA + EI+ D YL RLW V A + P L Sbjct: 144 RLQQVLADVLKSEEMDGGGYILRTAAEGAGEGEIRADLSYLKRLWAVVSRRAATAETPEL 203 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YE+ L R +RDL + I+V + Y DF MP A +V Y+ PIF Sbjct: 204 LYEDLPLQLRTVRDLVRPGMQRILVDSHENYTVLNDFCLKYMPEVADLVELYDGERPIFD 263 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 GIE + V L S G+++I+QTEA+ +IDVN+G ++T +TNLEAA Sbjct: 264 LYGIEEDIQRALGRVVPLKSGGHLVIDQTEAMTTIDVNTGSFVGRRNQQETLFKTNLEAA 323 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 +ARQLRLR+L G+++VDFIDM + ++ R V + L++++ +D + ++ +S+ GL+EM Sbjct: 324 TVLARQLRLRNLGGIVIVDFIDMRDAEHRRGVHRALEKAMARDPVKNKITGVSDLGLVEM 383 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + C C+G G +++ +V ILR + Y ++V V Sbjct: 384 TRKRSRESLERILCEDCPSCEGRGVLKTAETVCYEILREIMRDARAYETGGLMVLASQAV 443 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V LL+++ A + + E+ G SI+ + + F I Sbjct: 444 VERLLDEESANVGDLESFIGRSISFRAEPDYTQEQFDI 481 >gi|239815671|ref|YP_002944581.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110] gi|239802248|gb|ACS19315.1| ribonuclease, Rne/Rng family [Variovorax paradoxus S110] Length = 508 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 118/419 (28%), Positives = 204/419 (48%), Gaps = 10/419 (2%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 PE + I++ + Q LLVQ++K+ G KGA ++T +S+AGR V +P + Sbjct: 87 PERDHRNGGPMVPIEKQVFEGQSLLVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDNHI 146 Query: 217 ETISRKITNPVDRKNLKEIAR----------GLEVPAGMGVILRTAGASRTKIEIKRDFE 266 + ++ + + +A G+ G ILRT G + E+ D Sbjct: 147 GVSQKIPSDQRESLRTRMLALIEAAAAADSGGVVPANTGGFILRTNGEDSSDAELAEDIA 206 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YL + W +RE + L++++ +L++R +RD+ +D I + + + F Sbjct: 207 YLRKTWSRIREASSKMPPMSLLHQDLSLLQRVLRDMTSEDTQTIRIDSREQFEALLKFGL 266 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 MP A ++ Y+ PIF ++ ++ V L S GY++++QTEAL ++DVN+ Sbjct: 267 EYMPQAAGKLQHYKGERPIFDLYSVDEEIAKALGRRVELKSGGYLVVDQTEALTTVDVNT 326 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 G +DT +TNLEAA+ IARQLRLR+L G+I+VDFIDM + V + ++ Sbjct: 327 GGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMGRDDHREQVLAEFRKQ 386 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 L +DR + G S GL+EM+R+R R S+ + C C G G +++ SVA +R Sbjct: 387 LARDRVKTTAGGFSQLGLVEMTRKRTRESLAHMLCEPCAACGGQGIVKTARSVAYDAMRE 446 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + Q+T + + V+ L+++ + G I++ + + I Sbjct: 447 ILREARQFTPREFRIVSSPQVIELFLDEESQHLAGLSDFIGKPISLQSEPAIGQGQYDI 505 >gi|301630841|ref|XP_002944525.1| PREDICTED: ribonuclease G-like [Xenopus (Silurana) tropicalis] Length = 443 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 127/424 (29%), Positives = 211/424 (49%), Gaps = 2/424 (0%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V + +GG +K + I++ + Q L+VQ++K+ G+KGA ++T +S+A Sbjct: 17 HVADVWQRQEGGEAPMFARKSEPPVPIEKQVFEGQSLMVQVIKDPIGSKGARLSTQVSIA 76 Query: 204 GRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 GR V +P + + D R L+ + G G ILRT G + E+ Sbjct: 77 GRLLVFLPQDEHVGVSQKIPLDERDALRTRLQALVGDKATGGGGGFILRTNGEDASDEEL 136 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 D YL + W +R+ A L+Y++ NL++R +RD+ +D I + + + Sbjct: 137 AEDIAYLRKTWAGIRQAATRLPPLSLLYQDLNLLQRVLRDIASEDTQAIRIDSREQFAAL 196 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F + MP+ A ++ Y+ PIF I+ ++ V L S GY+I++QTEAL + Sbjct: 197 QQFGREFMPAAAAKLQLYKGERPIFDLFAIDEEIARALGRRVDLKSGGYLIVDQTEALTT 256 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G +DT +TNLEAA IA QLRLR+L G+++ DFIDM + + +V Sbjct: 257 IDVNTGGYVGARNFDDTIFKTNLEAAGAIACQLRLRNLGGIVIADFIDMLREDHKSAVLA 316 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + K+ + +DR + VG S GL+EM+R+R R S+ + C+ C G G +++ SV Sbjct: 317 EFKKQIGRDRVKTMVGGFSQLGLVEMTRKRTRESLAHMLCEPCSTCHGVGEVKTARSVCY 376 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR V Q+ V VV L+++ + G I++ + + Sbjct: 377 DILREVLREARQFNPREFRVIASPKVVELFLDEESQHLAGLSDFIGKPISLQAESSMGQE 436 Query: 562 LFYI 565 + I Sbjct: 437 QYDI 440 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 13/21 (61%) Query: 54 LQAAFVDYGGNRHGFLPFLEI 74 +Q+AF+D G R FL ++ Sbjct: 1 MQSAFIDIGLERAAFLHVADV 21 >gi|254479984|ref|ZP_05093232.1| ribonuclease, Rne/Rng family [marine gamma proteobacterium HTCC2148] gi|214039546|gb|EEB80205.1| ribonuclease, Rne/Rng family [marine gamma proteobacterium HTCC2148] Length = 489 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 126/406 (31%), Positives = 214/406 (52%), Gaps = 3/406 (0%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 + + I + + + ++VQ+ K+ G+KGA +TT LS++ RY V MP ++ + Sbjct: 81 RAQGSDAIGDYLHEGKKVIVQVTKDPLGSKGARITTELSVSSRYLVFMPQSNHVGVSQQI 140 Query: 223 ITNPVDRKN---LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + L + E+ AG G ILRTA E++ D +L RLW V Sbjct: 141 DDAVERDRLQQLLADGIAAEEMDAGGGYILRTAAEGVGLDEVRADLRFLKRLWSAVSRRG 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 + L+Y + L R +RDL + I+V + Y +F MP + ++ Y Sbjct: 201 KKARKAELLYSDLALHMRTVRDLARPGVERILVDSRESYNALTEFCNEYMPEVSDLLEHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F GIE +L +V L S GY+II+QTEA+ +IDVN+G +E+T Sbjct: 261 CGERPLFDLHGIEEELQGALGRKVGLKSGGYLIIDQTEAMTTIDVNTGSFVGRRNLEETI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA +ARQLRLR+L G+I+VDFIDM+++++ R V + L +++ +D AR ++ + Sbjct: 321 FKTNLEAATMLARQLRLRNLGGIIIVDFIDMQDEEHRRQVHRTLDKAMARDPARNKITGV 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + + C+ C G G +++ ++ I R + Y + Sbjct: 381 SELGLVEMTRKRTRESLEQLLCEDCSVCFGRGVLKTAETICYEIFREIMRDARAYENDTL 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V V+ LL+++ A + + E G +I++ + + + F I Sbjct: 441 MVLAAQGVIDRLLDEESANVADLEEFIGKAISLRVEPDNNPEHFDI 486 >gi|149277322|ref|ZP_01883464.1| ribonuclease G [Pedobacter sp. BAL39] gi|149232199|gb|EDM37576.1| ribonuclease G [Pedobacter sp. BAL39] Length = 503 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 126/559 (22%), Positives = 224/559 (40%), Gaps = 60/559 (10%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHP 76 + ++ D ++ EL E + G+IYL ++ ++ P L AAFVD G + FL + ++ P Sbjct: 3 IALVEDKQLVELHKEHINNNYAVGDIYLGRIKKIMPGLNAAFVDVGYEKDAFLHYFDLGP 62 Query: 77 DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 Q+L+K + I + + T+ ++ LE A E + Sbjct: 63 Q--------VQSLIKLTKIKRNG---------SVNGTLLDNFKLEGDINKAGKISEVVSK 105 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 +++ V E + P I +LV +K Sbjct: 106 NLVL---PVQIAKEPISTKGPRLSSDLSIAGRYI---------VLVPFSNVISISKKIKS 153 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 T K + E + + + G Sbjct: 154 NTE--------------------------RNRLKKIIESIKPKNFGVIIRTVSEGKGVHE 187 Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316 + ++ +N + ++ V+ E + IRD+ D + + V+ Sbjct: 188 LQKDLLDSVTKW----ENFIKKLPDAEPSKRVWGEMDRTSTLIRDILSTDFANVYVNDSG 243 Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 + + + ++ + P +IV+ Y+ PIF IE Q+ + V L Y+++ T Sbjct: 244 LFEDIRSYVHEISPEMEKIVKLYKHKEPIFEHFSIEKQIKNAFGKTVNLAGGAYLVVEHT 303 Query: 377 EALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435 EAL IDVNSG T E+ ALQ N EAA+EIARQLRLRD+ G++V+DFIDM + N Sbjct: 304 EALHVIDVNSGNRTASKENQEENALQVNKEAAKEIARQLRLRDMGGIVVIDFIDMHKPVN 363 Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 + + LKE + DRA+ + S FGL++++RQR+R + T++ C C G G I++ Sbjct: 364 RKMLFDYLKELMLLDRAKHTILPPSKFGLVQITRQRVRPEMNIVTSEKCPTCDGTGEIKA 423 Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 + I ++ L + NI + H + ++ + ++ +FG I + Sbjct: 424 SIVLMDDIENNLTYILQEQNEKNITLCVHPYIEAFIKKGFISLQWKWFFKFGQRIKIRAV 483 Query: 556 IELADKLFYIEKGSPVQAL 574 F+ + Sbjct: 484 PSYHLTEFHFISAKDEEIK 502 >gi|78223743|ref|YP_385490.1| ribonuclease E [Geobacter metallireducens GS-15] gi|78194998|gb|ABB32765.1| RNAse E [Geobacter metallireducens GS-15] Length = 806 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 191/475 (40%), Positives = 280/475 (58%), Gaps = 4/475 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + P+ R+ IQEVI+ Q L+VQ+ K ER KGAA+TTY+S GRY VLMP S Sbjct: 83 DDVPPENRNRRPRIQEVIRRGQELIVQVEKGERDMKGAALTTYMSFPGRYMVLMPG-SDS 141 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 ISRK+ + DRK LKE +E+P G+G I+RT +TK E+ +D + L+ L+ +++ Sbjct: 142 AGISRKVESDADRKKLKEKLSQMEIPEGIGYIVRTEALGKTKTELNKDLQNLLTLYKSIQ 201 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 E A AP L+++E N++ R IRD + +I E++V ++ Y+EA+DF K MP Y ++V Sbjct: 202 EKAAALKAPALIHQEMNVVIRTIRDYFTAEIDEVLVDSKEVYKEARDFFKQTMPKYEKLV 261 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + + + PIF R IE Q+D +++ +V L S GY+II TEALVSIDVNSG++T E +E Sbjct: 262 KLHTEKRPIFSRYQIEEQIDLIYEKKVPLKSGGYLIIEPTEALVSIDVNSGKTTGEKGVE 321 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 DTA +TNLEAAEE ARQLRLRDL GLIV+DFIDM ++K+N +VEK LK +LK+D+ARV+V Sbjct: 322 DTAYKTNLEAAEEAARQLRLRDLGGLIVLDFIDMRDRKHNATVEKTLKAALKEDKARVEV 381 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G IS FG+LEMSRQRI+ ++ + +T C +C G G ++S S+ALS LR V + T Sbjct: 382 GRISQFGMLEMSRQRIKQTLEQGSTLECPHCSGRGKVKSVESMALSFLRKVHAAAAKGTV 441 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE---KGSPVQA 573 + +V YLLN+K+ + E + + + V +E + P Sbjct: 442 AEVHGGLPLEVAYYLLNRKKRELARIEDDYDIVVTVKGRTSFLMNELELETVKREKPAHI 501 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + E V +E L + + + Sbjct: 502 EHPAEAAEAPEKKPETVMEAAEAVEPEETALQEGGEGKKRKRRRSRKKGKGEETP 556 >gi|121604639|ref|YP_981968.1| ribonuclease [Polaromonas naphthalenivorans CJ2] gi|120593608|gb|ABM37047.1| RNAse G [Polaromonas naphthalenivorans CJ2] Length = 499 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 121/398 (30%), Positives = 205/398 (51%), Gaps = 2/398 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I++ + Q ++VQ++K+ G KGA +T +S+AGR V +P + + Sbjct: 101 RPIEKQLFEGQAVMVQVLKDPMGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPRQR 160 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + L++ + L G G ILRT G T E+ D YL + W ++E +L A + Sbjct: 161 ED--LRQRVQTLVGDMGGGFILRTNGEEATDTELAEDIAYLRKTWIRIKEASLRLPATSV 218 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 ++++ +L++R +RD+ ++ I + + + + K F MPS ++ Y PIF Sbjct: 219 LHQDLSLLQRVLRDMVLENTQTIRIDSREQFEKLKAFAVEFMPSTVPKLQLYSGERPIFD 278 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 I+ ++ V L S GY++I+QTEAL +IDVN+G E+T +TNLEAA Sbjct: 279 LFNIDEEIAKALGRRVDLKSGGYLVIDQTEALTTIDVNTGGFVGARNFEETIYKTNLEAA 338 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + IARQLRLR+L G+++VDFIDM ++ + +V + K L +DR + V S GLLEM Sbjct: 339 QAIARQLRLRNLGGIVIVDFIDMSKENHRDAVLAEFKRQLARDRIKTAVNGFSALGLLEM 398 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + C+ C G G +++ SV ILR + Q+ + V Sbjct: 399 TRKRTRESLAHQLCEPCSACTGKGIVKTARSVTYDILREILREARQFNPREFRIVASPKV 458 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + L+++ + G I++ +A + + I Sbjct: 459 IELFLDEESQHLASLSDFIGKPISLQAEAVMAQEQYDI 496 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ S +ETRV V+ V+EL E ++ + GN+YL KV RV P +Q+AF+D Sbjct: 1 MQQEILINWS-PQETRVAVVEHAAVQELQVERTLERGLVGNVYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEIHP 76 G +R FL ++ Sbjct: 60 IGLDRAAFLHVADLMS 75 >gi|56708289|ref|YP_170185.1| ribonuclease E [Francisella tularensis subsp. tularensis SCHU S4] gi|110670760|ref|YP_667317.1| ribonuclease E [Francisella tularensis subsp. tularensis FSC198] gi|224457411|ref|ZP_03665884.1| ribonuclease E [Francisella tularensis subsp. tularensis MA00-2987] gi|254370773|ref|ZP_04986778.1| ribonuclease E [Francisella tularensis subsp. tularensis FSC033] gi|254875110|ref|ZP_05247820.1| ribonuclease E [Francisella tularensis subsp. tularensis MA00-2987] gi|56604781|emb|CAG45860.1| Ribonuclease E [Francisella tularensis subsp. tularensis SCHU S4] gi|110321093|emb|CAL09243.1| Ribonuclease E [Francisella tularensis subsp. tularensis FSC198] gi|151569016|gb|EDN34670.1| ribonuclease E [Francisella tularensis subsp. tularensis FSC033] gi|254841109|gb|EET19545.1| ribonuclease E [Francisella tularensis subsp. tularensis MA00-2987] gi|282159519|gb|ADA78910.1| Ribonuclease E [Francisella tularensis subsp. tularensis NE061598] Length = 885 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 187/652 (28%), Positives = 319/652 (48%), Gaps = 22/652 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + K Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + LL S+ V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612 +++ L+ + + + + + A + Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665 + D + + ++ +++ TD A ++ + Q + +F Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + N N + + + + + P ++ Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|160898966|ref|YP_001564548.1| ribonuclease [Delftia acidovorans SPH-1] gi|160364550|gb|ABX36163.1| ribonuclease, Rne/Rng family [Delftia acidovorans SPH-1] Length = 515 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 130/486 (26%), Positives = 225/486 (46%), Gaps = 6/486 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+++ + + E + G+V + + A E +A Sbjct: 31 PQETRVAIIENGAVQELHMERPLERGLVGNVYLGKVSRVLPGMQSAFIDIGLE----RAA 86 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 V + +GG +K I++ + Q ++VQ++K+ G KGA ++T +S Sbjct: 87 FLHVADVWQRQEGGEAPMFARKDMPVVPIEKQVFEGQTIMVQVIKDPIGTKGARLSTQIS 146 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI--ARGLEVPAGMGVILRTAGASRTKI 259 +AGR VL+P + D + E G G ILRT G + Sbjct: 147 IAGRLLVLLPQDDHIGISQKIPQGERDALRARLQGLVGTKETGGGGGFILRTNGEDSSDA 206 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E+ D YL + W +++ ++ L++++ NL++R +RDL + I + ++ + Sbjct: 207 ELADDIRYLRKTWSRIKDASVRLPPMSLLHQDLNLLQRVLRDLVGEGTQSIRIDSKEQFA 266 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 F + MP+ ++ Y PIF I+ ++ V L S GY+I++QTEAL Sbjct: 267 LLMTFGQEYMPAAVPKLQHYRGERPIFDLFAIDEEIARALGRRVDLKSGGYLIVDQTEAL 326 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 ++DVN+G +DT +TNLEAA++IARQLRLR+L G+I+VDFIDM + V Sbjct: 327 TTVDVNTGGYVGARNFDDTIFKTNLEAAQQIARQLRLRNLGGIIIVDFIDMVRDDHQAEV 386 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + K L +DR + G S GL+EM+R+R R S+ + C C+G G++++ SV Sbjct: 387 LSEFKRQLGRDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCESCPVCQGKGHVKTVRSV 446 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 +LR + Q+ + VV L+++ + I++ +A Sbjct: 447 CYEVLREILREARQFNPREFRIVASPKVVEMFLDEESQHLAGLSDFIKKPISLQAETAMA 506 Query: 560 DKLFYI 565 + + I Sbjct: 507 QEQYDI 512 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV ++ + V+EL E ++ + GN+YL KV+RV P +Q+AF+D Sbjct: 21 MQQDILINWS-PQETRVAIIENGAVQELHMERPLERGLVGNVYLGKVSRVLPGMQSAFID 79 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 80 IGLERAAFLHVADV 93 >gi|187931488|ref|YP_001891472.1| ribonuclease E [Francisella tularensis subsp. mediasiatica FSC147] gi|187712397|gb|ACD30694.1| ribonuclease E [Francisella tularensis subsp. mediasiatica FSC147] Length = 885 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 186/652 (28%), Positives = 318/652 (48%), Gaps = 22/652 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + K Sbjct: 181 FDTLVELWGSILQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + LL S+ V+ Y + P+F + GI+ Q+++ ++ E+ L S G ++I+ TEALV+ID Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLTSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612 +++ L+ + + + + + A + Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665 + D + + ++ +++ TD A ++ + Q + +F Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + N N + + + + + P ++ Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|150008610|ref|YP_001303353.1| ribonuclease G [Parabacteroides distasonis ATCC 8503] gi|255014408|ref|ZP_05286534.1| ribonuclease G [Bacteroides sp. 2_1_7] gi|256841373|ref|ZP_05546880.1| ribonuclease G [Parabacteroides sp. D13] gi|262383460|ref|ZP_06076596.1| ribonuclease G [Bacteroides sp. 2_1_33B] gi|298376094|ref|ZP_06986050.1| ribonuclease G [Bacteroides sp. 3_1_19] gi|149937034|gb|ABR43731.1| ribonuclease G [Parabacteroides distasonis ATCC 8503] gi|256737216|gb|EEU50543.1| ribonuclease G [Parabacteroides sp. D13] gi|262294358|gb|EEY82290.1| ribonuclease G [Bacteroides sp. 2_1_33B] gi|298267131|gb|EFI08788.1| ribonuclease G [Bacteroides sp. 3_1_19] Length = 525 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 128/582 (21%), Positives = 241/582 (41%), Gaps = 63/582 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + VL D + EL E+ + G+IYL KV ++ P L AAF+D Sbjct: 1 MISELVVDV-QPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI-AQTDSEAVADDVTHGDVTIPNDHS 119 G + FL +L++ P++ +Q L + ++ + + +G ++ Sbjct: 60 VGYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVG 119 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 E + IA T+ + S F +Y + ++ Sbjct: 120 QEVLVQIAKEPISTKGPRLTSE--------------------LSFAGRYIVLIPFADKVS 159 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + +I E + + + I R + L + L Sbjct: 160 VSTKIKSSEERARLRQLIQSIKPKNFSV-----------IVRTSSEGKRVAELDHELKTL 208 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 ++ AP ++YEE + Sbjct: 209 MKRW-----------------------------EDNIVKVPKLKAPAIIYEETARTVALL 239 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD++ I V+ ++ Y +D++ L+ P IV+ Y PIF + Q+ SL Sbjct: 240 RDIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFDNFAVTKQIKSLF 299 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 VT S Y+II TEA+ IDVNSG ++ ++ TA+ N+ AA+EIARQLRLRD Sbjct: 300 GRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRD 359 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IV+DFIDM E N + + + + +++ DRA+ + +S FGL++++RQR+R ++ Sbjct: 360 MGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDV 419 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 T++ C C G G ++ S+ ++ + ++ +H H V Y+ Sbjct: 420 DTSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLFPL 479 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 ++++ ++ + V+ LA + + + + Sbjct: 480 SMKWKMKYTHGLKVIPNQSLAFLEYKFFDADKNELDMKEEKE 521 >gi|261856323|ref|YP_003263606.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2] gi|261836792|gb|ACX96559.1| ribonuclease, Rne/Rng family [Halothiobacillus neapolitanus c2] Length = 496 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 137/426 (32%), Positives = 225/426 (52%), Gaps = 9/426 (2%) Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 +V D++ E R I ++++ Q L+VQ++K+ G KGA +TT +++ RY Sbjct: 69 HVSDIELKPEEKETGVETRPRMIYDLLRTGQNLIVQVIKDPLGTKGARLTTEITIPSRYL 128 Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLE--------VPAGMGVILRTAGASRTKI 259 V +PN SR +PV R LK+I G ILRTA T Sbjct: 129 VYLPNGRNIGVSSRI-EDPVQRDRLKDILAEFMAESIERVGENEIGGFILRTAAEGATAE 187 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 +++D+++L+RLW +V+E + L++E+ + R +RD+ + + +I + + Y Sbjct: 188 ALRQDYDFLLRLWASVQERQSQTNGVGLIFEDLPIALRTLRDVLGRYVEKIRIDSRETYH 247 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 A F + ++P I+ Y P+F IE ++ + + V L S GY+II+QTEA+ Sbjct: 248 RAIQFAQEMVPDILPILEHYPGERPLFDMHNIEQEIVNAMERRVPLKSGGYIIIDQTEAM 307 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +IDVN+G +E+T +TNLEAA IARQLRLR+L G+I++DFIDM E + +V Sbjct: 308 TTIDVNTGGFVGSKNLEETIFKTNLEAASTIARQLRLRNLGGIIILDFIDMIEPDHRLAV 367 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 ++ LK +L+ D AR +V +S GL+EM+R+R R S+ VC C G G +++ +V Sbjct: 368 QETLKRALEADHARTKVCEVSGLGLVEMTRKRTRESLEHILCTVCPTCSGRGTVKTAETV 427 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 I R V QY A ++V S V+ L + ++ E + GV + + + Sbjct: 428 CYEIFREVTREARQYHAKQMLVIASSSVIDRLREEDSTSLAELQEFIGVPLRLQADVHYL 487 Query: 560 DKLFYI 565 + + I Sbjct: 488 PEQYDI 493 >gi|134301754|ref|YP_001121722.1| ribonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|134049531|gb|ABO46602.1| ribonuclease, rne/rng family [Francisella tularensis subsp. tularensis WY96-3418] Length = 885 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 187/652 (28%), Positives = 319/652 (48%), Gaps = 22/652 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + K Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + LL S+ V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612 +++ L+ + + + + + A + Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665 + D + + ++ +++ TD A ++ + Q + +F Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + N N + + + + + P ++ Sbjct: 601 RQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|34495580|ref|NP_899795.1| ribonuclease G [Chromobacterium violaceum ATCC 12472] gi|34101435|gb|AAQ57804.1| ribonuclease G [Chromobacterium violaceum ATCC 12472] Length = 498 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 110/406 (27%), Positives = 207/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I++++ Q +LVQ++K+ G KGA ++T +SLAGR+ V +P Sbjct: 90 QRQHPTEPQRIEKMLFEGQTVLVQVIKDPIGTKGARLSTQISLAGRFLVHLPQEEHIGVS 149 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + ++ + + L + G I+RT+ + E+ D EYL +LW ++++ + Sbjct: 150 QKIESDAERHSLKARLEKLLPAGSPKGYIIRTSAETARDDELAADIEYLSKLWSDIQQKS 209 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ +++V + Y +F + + + +Y Sbjct: 210 QTLPPQSLLYDDLPLAVRVLRDMVSGYTDKVLVDSNENYGRMVEFAEQYVQIAVDKIERY 269 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F GIE ++D V L GY+I++QTEA+ +IDVN+G ++T Sbjct: 270 AGERPLFELHGIETEIDKALARRVNLKFGGYLIVDQTEAMTTIDVNTGGFVGNRNFDETI 329 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA + IARQLRLR+L G+++VDFIDM+ ++ +V +L +++ +DR RV + Sbjct: 330 FKTNLEATQVIARQLRLRNLGGIVIVDFIDMDNDEHQAAVLAELAKAMARDRTRVTLNGF 389 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R S+ + C C+G G I++ +V I R + QY A Sbjct: 390 TSLGLVEITRKRTRESLAHILCEPCPTCQGRGEIKTAQTVCYEIQREIVREARQYDAKGY 449 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ G +++ + + F + Sbjct: 450 RILAAQSVIDMFLDEESQSLAMLVDFIGKPVSLSVEASYTQEQFDV 495 >gi|88704056|ref|ZP_01101771.1| ribonuclease G [Congregibacter litoralis KT71] gi|88701883|gb|EAQ98987.1| ribonuclease G [Congregibacter litoralis KT71] Length = 484 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 133/398 (33%), Positives = 205/398 (51%), Gaps = 2/398 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I + ++ Q++ VQ+VK+ KGA +T+ LS++ RY V MP + R Sbjct: 84 IADHLREGQMVTVQVVKDPISKKGARLTSQLSVSTRYLVYMPKSDHLGISQRIDEVEERA 143 Query: 230 KNL--KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + A E G G I+RTA + EI D +L RLW V + P L Sbjct: 144 RLQAVLTAALESESMTGGGFIVRTAAEGAGESEILADLRFLKRLWAVVSRRVSEARGPEL 203 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YE+ L RA+RDL + I+V Y DF MP A +V YE PIF Sbjct: 204 LYEDLPLQLRAVRDLARPGVQRILVDSHDNYGVLNDFCLKYMPEVADLVELYEGERPIFD 263 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 G+E + V L S G+++I+QTEA+ +IDVN+G E+T +TNLEA Sbjct: 264 LHGVEEDIQRALARVVPLKSGGHLVIDQTEAMTTIDVNTGSFVGRRNQEETLFKTNLEAV 323 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 +ARQLRLR+L G+I+VDFIDM + ++ R V + L++++ +D AR ++ +S GL+EM Sbjct: 324 SVLARQLRLRNLGGIIIVDFIDMSDGEHRRQVHRALEKAMSRDPARNKISGVSALGLIEM 383 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + + C C+G G ++S +V ILR + Y ++V V Sbjct: 384 TRKRSRESLERTLCEDCPNCEGRGVLKSAETVCYEILREIMRDARAYETGGLLVLASQAV 443 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V LL+++ A + + E+ SI+ + + F I Sbjct: 444 VERLLDEESAHVGDLESFIERSISFRAEPDYTQEQFDI 481 >gi|301309508|ref|ZP_07215450.1| ribonuclease G [Bacteroides sp. 20_3] gi|300832597|gb|EFK63225.1| ribonuclease G [Bacteroides sp. 20_3] Length = 525 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 129/582 (22%), Positives = 241/582 (41%), Gaps = 63/582 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + VL D + EL E+ + G+IYL KV ++ P L AAF+D Sbjct: 1 MISELVVDV-QPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI-AQTDSEAVADDVTHGDVTIPNDHS 119 G + FL +L++ P++ +Q L + ++ + + +G ++ Sbjct: 60 VGYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVG 119 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 E + IA T+ + S F +Y + ++ Sbjct: 120 QEVLVQIAKEPISTKGPRLTSE--------------------LSFAGRYIVLIPFADKVS 159 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + +I E + + + I R + L + L Sbjct: 160 VSTKIKSSEERARLRQLIQSIKPKNFSV-----------IVRTSSEGKRVAELDHELKTL 208 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 ++ AP +VYEE + Sbjct: 209 VKRW-----------------------------EDNIVKVPKLKAPAIVYEETARTVALL 239 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD++ I V+ ++ Y +D++ L+ P IV+ Y PIF + Q+ SL Sbjct: 240 RDIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFDNFAVTKQIKSLF 299 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 VT S Y+II TEA+ IDVNSG ++ ++ TA+ N+ AA+EIARQLRLRD Sbjct: 300 GRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRD 359 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IV+DFIDM E N + + + + +++ DRA+ + +S FGL++++RQR+R ++ Sbjct: 360 MGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDV 419 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 T++ C C G G ++ S+ ++ + ++ +H H V Y+ Sbjct: 420 DTSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLFPL 479 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 ++++ ++ + V+ LA + + + + Sbjct: 480 SMKWKMKYTHGLKVIPNQSLAFLEYKFFDADKNELDMKEEKE 521 >gi|319793384|ref|YP_004155024.1| ribonuclease, rne/rng family [Variovorax paradoxus EPS] gi|315595847|gb|ADU36913.1| ribonuclease, Rne/Rng family [Variovorax paradoxus EPS] Length = 508 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 120/420 (28%), Positives = 206/420 (49%), Gaps = 12/420 (2%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 PE + I++ + Q LLVQ++K+ G KGA ++T +S+AGR V +P + Sbjct: 87 PERDHRNGGPMVPIEKQVFEGQSLLVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDNHI 146 Query: 217 ETISRKITNPVDRKNLKEIARGLE-----------VPAGMGVILRTAGASRTKIEIKRDF 265 +S+KI + + +E G ILRT G + E+ D Sbjct: 147 G-VSQKIPSEQRESLRTRMLTLIEAAAAADSGGVVPSNTGGFILRTNGEDSSDAELAEDI 205 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 YL + W +R+ + A L++++ +L++R +RD+ +D I + + + F Sbjct: 206 GYLRKTWSRIRDASSKLPAMSLLHQDLSLLQRVLRDMTSEDTQTIRIDSREQFEVLLKFG 265 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 MP A ++ Y+ PIF ++ ++ V L S GY++++QTEAL ++DVN Sbjct: 266 LEFMPQAAGKLQHYKGERPIFDLYSVDEEIAKALGRRVELKSGGYLVVDQTEALTTVDVN 325 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 +G +DT +TNLEAA+ IARQLRLR+L G+I+VDFIDM + V + ++ Sbjct: 326 TGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMGRDDHREQVLAEFRK 385 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 L +DR + G S GL+EM+R+R R S+ + C C G G +++ SVA ++R Sbjct: 386 QLARDRVKTTAGGFSQLGLVEMTRKRTRESLAHMLCEPCAACGGQGIVKTARSVAYDVMR 445 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + Q+T + + V+ L+++ + G I++ + + I Sbjct: 446 EILREARQFTPREFRIVSSPQVIELFLDEESQHLAGLSDFIGKPISLQSEPAIGQGQYDI 505 >gi|90407760|ref|ZP_01215938.1| Ribonuclease G and E [Psychromonas sp. CNPT3] gi|90311120|gb|EAS39227.1| Ribonuclease G and E [Psychromonas sp. CNPT3] Length = 490 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 114/414 (27%), Positives = 195/414 (47%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K + I E+++ Q ++VQ+VK+ G KGA +TT +++ RY V MP Sbjct: 76 HTECVAQTEKVKFKVADISELVRQGQDIMVQVVKDPLGTKGARLTTDITVPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R ++ + + + G I+RTA + E+ D +L R+W Sbjct: 136 SSHVGVSQRIASSSERDR--LKAITQTCINELGGFIIRTAAEGAPENELTHDAAFLQRVW 193 Query: 273 DNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 V + L+Y++ L R +RD +I + + + + E + F +P Sbjct: 194 AKVLKRRARFKSKNKLLYQDLGLAFRILRDFVGTEIDRVRIDSKLKFTELQKFTHEFVPE 253 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + Y PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 LEDKIEYYSGESPIFDLFDAENEVQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 313 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T TN+EA + IARQLRLR+L G+I++DFIDM+ + R V L+ +L KDR Sbjct: 314 HRNLEETIFNTNIEATQAIARQLRLRNLGGIIILDFIDMQSNDHKRRVFTSLELALSKDR 373 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 + + S GL+EM+R+R + S+ C C G GY+++ +V +LR + Sbjct: 374 VKTHINDFSPLGLIEMTRKRTQESLEHIFCSPCEQCNGRGYVKTVETVCYEVLREILRVN 433 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A + V+T V L + ++ E + + + F + Sbjct: 434 RAYDAEHFAVYTSPAVADALRGDESHSLGELILFMSKEVTIYAEPLYGQEQFDV 487 >gi|332184363|gb|AEE26617.1| Ribonuclease E [Francisella cf. novicida 3523] Length = 886 Score = 269 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 181/599 (30%), Positives = 305/599 (50%), Gaps = 5/599 (0%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LW+++ + P L+++E ++I R +RD +D+ EIIV ++ + + K Sbjct: 181 FDTLVELWESISKAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + LL S+ V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +I+E E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIIEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 +++ T ++ D K + L ++++ +I + Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKVAAVDLNQAIENQATNQANSSIQEQ 540 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + ++ + + + I + + ++ Sbjct: 541 NPQTDTQVNTAMQNDKKQDAVTQQTNKKGFFAKLFSSIFGTDSKTTQQANNPGQKQQNK 599 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|332678545|gb|AEE87674.1| Ribonuclease E [Francisella cf. novicida Fx1] Length = 885 Score = 269 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 181/610 (29%), Positives = 309/610 (50%), Gaps = 8/610 (1%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + K Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + LL S+ V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +I+E E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIIEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEKG----SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 +++ + + + + P K + + + ++ + Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKVAAVDLNQAIENQAASNTQEQKPQT 540 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +++ ++ A + S + + + + + N Sbjct: 541 DAQVDIATQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 680 ENGAHGFTEN 689 H + Sbjct: 601 RQQQHNKAQK 610 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|71282114|ref|YP_271204.1| ribonuclease G [Colwellia psychrerythraea 34H] gi|71147854|gb|AAZ28327.1| ribonuclease G [Colwellia psychrerythraea 34H] Length = 485 Score = 269 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 126/484 (26%), Positives = 221/484 (45%), Gaps = 12/484 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ ++ + E A G++ + + A ++ + + A Sbjct: 11 PSETRVALIENGSLQEVHIERQAKRGIVGNIYLGKVIRVLPGMQAAFVDINLDKAAFLHA 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ + + I+ ++ Q ++VQ+VK+ G+KGA +TT ++ Sbjct: 71 SDINSKLILKEETDQV----------PDIRSLVHEGQHIMVQVVKDPLGSKGARLTTDIT 120 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 +A RY VLMPN+ R + + G I+RTAG ++++ Sbjct: 121 IASRYLVLMPNSQHAGISLRIENPNERDR--LKDIVTPYCDEQQGFIVRTAGEGADELDL 178 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D E+L R+W V +Y++ +L R +RD ++ I + ++E Sbjct: 179 QHDAEFLRRVWHKVLARKQRKQTNLPLYQDLSLSFRVLRDFVGINLERIRIDSNLTFQEL 238 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 F + +P ++ Y PIF +E ++ ++ L S GY+II+QTEA+ + Sbjct: 239 TVFTEEFVPELTPLLEYYPGELPIFDLFSVEREIQRALHRKIELKSGGYLIIDQTEAMTT 298 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + DT TN+EA + IARQLRLR+L G+I+VDFIDM + R V Sbjct: 299 IDINTGAFVGHRNLADTIFSTNIEATQVIARQLRLRNLGGIIIVDFIDMHNDDHKRRVLH 358 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L ++ KD+ + + S GL+EM+RQR R S+ C C G G++++ +V Sbjct: 359 SLDMAMSKDKVKYSLHGFSALGLVEMTRQRTRESLEHVLCGECPLCTGRGHLKTVETVCF 418 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +LR + + A V+ + V L+N + + E E G I V + Sbjct: 419 EVLREIVRVNRAHDADKFTVYASTAVSNSLVNDEYHNLAEVEVFIGKLIKVQAEPMYNQE 478 Query: 562 LFYI 565 F + Sbjct: 479 QFDV 482 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ + ++E+ E + K+ I GNIYL KV RV P +QAAFVD Sbjct: 1 MSAELLINVT-PSETRVALIENGSLQEVHIERQAKRGIVGNIYLGKVIRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 ++ FL +I+ Sbjct: 60 INLDKAAFLHASDINS 75 >gi|254373188|ref|ZP_04988677.1| ribonuclease E [Francisella tularensis subsp. novicida GA99-3549] gi|151570915|gb|EDN36569.1| ribonuclease E [Francisella novicida GA99-3549] Length = 885 Score = 269 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 181/610 (29%), Positives = 309/610 (50%), Gaps = 8/610 (1%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + K Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + LL S+ V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +I+E E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIIEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEKG----SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 +++ + + + + P K + + + ++ + Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKVAAVDLNQAIENQAASNTQEQKPQT 540 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +++ ++ A + S + + + + + N Sbjct: 541 DAQVDIATQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 680 ENGAHGFTEN 689 H + Sbjct: 601 RQQQHNKAQK 610 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|224369812|ref|YP_002603976.1| Rne2 [Desulfobacterium autotrophicum HRM2] gi|223692529|gb|ACN15812.1| Rne2 [Desulfobacterium autotrophicum HRM2] Length = 487 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 171/421 (40%), Positives = 254/421 (60%), Gaps = 1/421 (0%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 + + + +++K Q L+VQ+ K+ +KGA +TT++SL G Sbjct: 64 EKNGFLQKQEIHSDYFLDNDSGDRSFSKLVKKGQELIVQVTKDPIMHKGAMLTTFISLPG 123 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R SV MP +S +SR+I + +R+ LKEI L++P G G+I+RTAG TK + D Sbjct: 124 RLSVFMPGSSTRG-VSRQIDDEAERRRLKEITEKLKLPEGFGLIVRTAGLDATKTMLTND 182 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 YLMR W + + A+N P L+Y+E NL R++RD + DI+EI++ Y+E KDF Sbjct: 183 TRYLMRAWKEINKKAVNEPTPSLLYKEQNLAVRSLRDYFTADITEILIDDPDVYKEVKDF 242 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 MK++ P +IV+ Y+ PIF + IE Q+ S+ +T+ L S G ++I+QTEALV+IDV Sbjct: 243 MKVIAPKQEKIVKPYKGEKPIFTKYQIEEQIASIFETKALLKSGGAIVIDQTEALVAIDV 302 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 NSG+ST IE TA TN+EAAEE+ARQLRLRD+ GLIV+DFIDM+EKK+ V K LK Sbjct: 303 NSGKSTGRKNIEQTAFHTNIEAAEEVARQLRLRDMGGLIVIDFIDMKEKKHKAEVTKTLK 362 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 LK D+A+ +VG IS FGL+EMSRQ+IRS++ + + C +CKG G + + ++ ++L Sbjct: 363 RFLKSDKAKTKVGGISAFGLVEMSRQKIRSAITFGSFETCKHCKGRGLVPNTETLGHALL 422 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R + ++ + V YLLN+KR +V EA+ V++ + L Sbjct: 423 RKLSLETIKAENKTVKALVPEKVASYLLNKKREELVNIEAKRNVTLVIESDDSLLLGESR 482 Query: 565 I 565 I Sbjct: 483 I 483 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 39/79 (49%), Positives = 54/79 (68%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K+LI+A +E R+V ++DN++E E+ +K +GNIY +TRVEPSLQA FVD Sbjct: 1 MTTKILINALDSDECRIVQIKDNKLEGFHIETAARKVTQGNIYKGVITRVEPSLQAVFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYY 79 YG ++GFL EIH DY+ Sbjct: 61 YGTEKNGFLQKQEIHSDYF 79 >gi|118497831|ref|YP_898881.1| ribonuclease E [Francisella tularensis subsp. novicida U112] gi|194323804|ref|ZP_03057580.1| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp. novicida FTE] gi|208779895|ref|ZP_03247239.1| ribonuclease, Rne/Rng family protein [Francisella novicida FTG] gi|254374642|ref|ZP_04990123.1| ribonuclease E [Francisella novicida GA99-3548] gi|118423737|gb|ABK90127.1| ribonuclease E [Francisella novicida U112] gi|151572361|gb|EDN38015.1| ribonuclease E [Francisella novicida GA99-3548] gi|194322168|gb|EDX19650.1| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp. novicida FTE] gi|208744350|gb|EDZ90650.1| ribonuclease, Rne/Rng family protein [Francisella novicida FTG] Length = 885 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 187/652 (28%), Positives = 319/652 (48%), Gaps = 22/652 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NND 144 + +L S + A D+ D+ I + ++ A I E S+ + N Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N E K I ++ Q L+VQI KEERG+KGAA+TT+++LAG Sbjct: 62 EEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 Y VL+PN +G ISR++ + LK+ + L +P M VI RTA + E+K D Sbjct: 122 SYMVLLPNNPEGGGISRRVEGEDRER-LKKYLKELNIPKNMSVIARTACVECSFEELKHD 180 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 F+ L+ LW ++ + P L+++E ++I R +RD +D+ EIIV ++ + + K Sbjct: 181 FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ 240 Query: 325 MKLLMPSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + LL S+ V+ Y + P+F + GI+ Q+++ ++ E+ LPS G ++I+ TEALV+ID Sbjct: 241 LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID 300 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VNS R+ + +E TA +TNLEAAEE+ARQLR+RDL GL++VDFIDM N + VE+KL Sbjct: 301 VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL 360 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L++DRAR+Q+ IS GL+E+SRQR+ SS+ ES + C C+G G+I++ + AL+I Sbjct: 361 MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI 420 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + ++ + I V D+ Y+LN+KR +IVE E V + ++ + F Sbjct: 421 LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF 480 Query: 564 YIEK--------GSPVQALVNTGHKVGSDSQAP---SYDKNIECVWQDEALLPIPKSESL 612 +++ L+ + + + + + A + Sbjct: 481 QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT 540 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA-------TDHHDAGVVSDVSSIQNVIDDSFD 665 + D + + ++ +++ TD A ++ + Q + +F Sbjct: 541 DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ 600 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + N N + + + + + P ++ Sbjct: 601 RQQQHNKAQKDNNQRNERNNNNNKNERNKNRNNKGAKPQIAQENKPQKDNSQ 652 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++ EETR+ L + ++ +LD ES ++Q K NIY ++R+EPSL A FV+YG Sbjct: 2 KRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLPF E+ +YY Sbjct: 62 EEKNGFLPFKEV-SEYY 77 >gi|225175160|ref|ZP_03729156.1| ribonuclease, Rne/Rng family [Dethiobacter alkaliphilus AHT 1] gi|225169336|gb|EEG78134.1| ribonuclease, Rne/Rng family [Dethiobacter alkaliphilus AHT 1] Length = 557 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 120/586 (20%), Positives = 223/586 (38%), Gaps = 84/586 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K++I+ + ++TRV VL +++ E+ E +++ GNIY V V P +QAAFVD Sbjct: 1 MQKKIVINCDN-KQTRVAVLEEDKPVEIYLERPVHQRVVGNIYKGVVANVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R+ FL + ALL E + + + + + G+ + Sbjct: 60 IGLERNAFLYVDD--------------ALLPEESNNSRGKKKIEELLRPGEEVMVQVVKE 105 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + A +++ + D ++ + I E+ L Sbjct: 106 PFGSKGARLTRQITIPGRHLVLMPSAEYTGVSRRIEDPDERERL--RQIIAEIRPEGHGL 163 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +V+ V E + L + + + + ++ A L Sbjct: 164 IVRTVAEGLDDDAFRQDLQFLLP-------------------LWDRIQNRFRQKQAPSLI 204 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I+ F + + L + +L+ R Sbjct: 205 YQD----------LDLIYRMIRDLFTEQIEQLVVDTRYEYEKIQEALDVVDSSLVNRV-- 252 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 Y P+F GIE +++ Sbjct: 253 ------------------------------------YYYSGDEPVFDVYGIEAEIERALS 276 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L GY++ + TEAL IDVN+G+ + + DT +TNLEAA EI RQ+RLRD+ Sbjct: 277 RTVWLDCGGYLVFDHTEALTVIDVNTGKYIGKTNLADTVFKTNLEAATEIIRQVRLRDIG 336 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+ +++ R V +KL E K+DR + + ++ GL+EM+R++ R + Sbjct: 337 GIIIIDFIDMDNEEHRRLVLEKLTEKAKEDRTKSHILGLTGLGLVEMTRKKARQGLDAVL 396 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C YC G G + + V+ R ++ YL + ++V + V L+ + + Sbjct: 397 QQTCPYCHGRGKVLTADVVSARTERQLKSYLNGLDSEAVLVEMNQSVAGLLIGPGGSYLR 456 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 + E G +I + + + ++ + + + V + Sbjct: 457 KLEEETGKTIFIRGSETMHVEKHHVLATGSLSEVQELAYPVTVGER 502 >gi|253998331|ref|YP_003050394.1| Rne/Rng family ribonuclease [Methylovorus sp. SIP3-4] gi|313200405|ref|YP_004039063.1| Rne/Rng family ribonuclease [Methylovorus sp. MP688] gi|253985010|gb|ACT49867.1| ribonuclease, Rne/Rng family [Methylovorus sp. SIP3-4] gi|312439721|gb|ADQ83827.1| ribonuclease, Rne/Rng family [Methylovorus sp. MP688] Length = 485 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 123/411 (29%), Positives = 217/411 (52%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 E ++ IQEV+ Q ++VQ++KE G KGA +TT +S+AGR+ V +P Sbjct: 72 DVLECANSDKDKEKTIQEVLHEGQPIMVQVIKEPIGTKGARLTTQISIAGRFLVYLPQQQ 131 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + + L G I+RT + T E+ D +YL ++W N Sbjct: 132 HIGVSQRIEDEAEREFLKERLLKLLPENRQGGYIIRTMSETATDDELLADVDYLNKVWSN 191 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ + + LV+++ +L R +RD+ +D ++V + Y++ +F + + Sbjct: 192 IQAASHGAADRSLVFQDLSLPMRVLRDVVNEDTDRVLVDSRETYQKLLEFGQHYAIGAVK 251 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y+ P+F +E +++ +V + S GY+I +QTEAL ++DVN+G Sbjct: 252 KLEHYQGERPLFDMYHVEQEIERAMSRKVEMKSGGYLIFDQTEALTTVDVNTGGFVNGRS 311 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 + DT +TNLEA++ IARQLRLR+L G+I++DFIDM+E ++ +V +LK +L KDRAR Sbjct: 312 LADTIFKTNLEASQCIARQLRLRNLGGIIIIDFIDMDEDEHRVAVLDELKRALAKDRART 371 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 + S GL+EM+R+R R S+ + C C+G G I++ ++ ILR + + Q+ Sbjct: 372 GISGFSALGLVEMTRKRTRESLAHILCEPCPACQGRGEIKTAQTICYEILRELLRHARQF 431 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 TA + V V+ LL+++ ++ G +++ + + F I Sbjct: 432 TARELRVLASPKVIDLLLDEESQSLANLSDFIGKPVSLQAETQYPQENFDI 482 >gi|168699596|ref|ZP_02731873.1| ribonuclease E [Gemmata obscuriglobus UQM 2246] Length = 987 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 167/461 (36%), Positives = 262/461 (56%), Gaps = 6/461 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G P+ + + IQE+ K Q ++VQ++KE G KG ++TY+S+AGRY VLMP+ Sbjct: 526 GSGPKGGRDRGLPKPPIQEIFKRGQEVIVQVIKEAVGTKGPTLSTYVSIAGRYLVLMPSL 585 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ++ +SRKI + R+ L+EI L P G+G I+RTA R E++ D YL+RLW Sbjct: 586 NRVG-VSRKIEDHDARRRLREIMSTLAPPKGVGFIVRTAAVDRDAKELQNDLAYLLRLWQ 644 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 V + P +Y E ++I R IRD++ DI I V + A +F++++MP +A Sbjct: 645 VVVKRLKRVAGPVEIYRESDMITRTIRDIFTSDIDTIWVDEANAFGHASEFLQIVMPKFA 704 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ ++ P+F + IE ++ +HQ + +P G ++I QTEALV+IDVNSG ++ Sbjct: 705 NRIKHFDHTEPLFHKYSIEEEIAKIHQKRIEMPLGGSLVIEQTEALVAIDVNSGNFRADN 764 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 E+TA Q NL AA+EIARQLRLRDL G+IV DFIDM + + R VE +E+L++DRAR Sbjct: 765 NAEETAFQMNLHAAKEIARQLRLRDLGGVIVNDFIDMRSESHRRKVEDAFREALRRDRAR 824 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 ++ IS FGL+EM+RQRIR S+ S C +C+G G++++ S+A+ ++R + + Sbjct: 825 TKILRISQFGLIEMTRQRIRPSLKRSIFADCPHCRGNGFVKTSESLAIEVMRLLHLAAHR 884 Query: 514 YTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKG 568 A + V H+D YLLN+KR I E R + +N+ ++ + I G Sbjct: 885 APAVQLVQVAVHTDAASYLLNKKRKEIAALEERGKLEVNITGQPGISPEALTIRCFDHNG 944 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + V+ L S + P D +++ P+ Sbjct: 945 NEVRLLPPAPLPKLSAGRIPPRDDRRSGGGREDRGARYPRP 985 Score = 143 bits (361), Expect = 7e-32, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 2/145 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLI+ EE R+ ++ D +EEL E ++ GNIY ++ +EPS+QAAFVD Sbjct: 1 MKKEMLINVLQPEECRIAIVEDGVLEELYVERASQESYVGNIYKGRIVNIEPSIQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +G R+GFL ++ P YY+ S +A L E A D Sbjct: 61 FGIGRNGFLHVSDVDPAYYKHLLS--KADLAEYEAELEREYGSAPGGGGRDRGARGGRGR 118 Query: 121 EEVAPIANFSQETEEESIISANNDV 145 + E +A N+ Sbjct: 119 DRGPKPPREMTSWLEPQPAAARNED 143 >gi|226939011|ref|YP_002794082.1| CafA [Laribacter hongkongensis HLHK9] gi|226713935|gb|ACO73073.1| CafA [Laribacter hongkongensis HLHK9] Length = 506 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 134/497 (26%), Positives = 237/497 (47%), Gaps = 6/497 (1%) Query: 75 HPDYYQIPFSDRQALLKESNIA-----QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANF 129 HP IP R ++ I Q AV +D ++ I + S V I Sbjct: 7 HPTAQPIPLPSRDSVRLAEKILVNITPQETRVAVLEDNVVQELHIEREASRGIVGNIYLG 66 Query: 130 SQETEEESIISANNDVV-SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 + + SA ++ + + + I++++ Q ++VQ++K+ Sbjct: 67 KVKRVLPGMQSAFIEIGLERAAFLHIADILEQRQHPTEPQRIEKMLFEGQTVMVQVIKDP 126 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 G KGA ++T +SLAGR+ VL+P + + ++ + + L G I Sbjct: 127 IGTKGARLSTQISLAGRFLVLLPQEAHIGVSQKIESDTDRSGLRQRLEALLPETGPRGYI 186 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 +RT+ S T E+ D EYL R+W+ V+ A L+Y++ L R +RD+ Sbjct: 187 IRTSAESATDGELAADVEYLSRMWEVVKSRGATMPAQSLLYQDLQLALRVLRDMVSDTTE 246 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 +++V + Y + +F + + + +Y P+F GIE +++ V L Sbjct: 247 KVVVDSTENYGKMVEFAQQYVAQSLPKIERYAGERPLFELHGIETEVERALARRVNLKFG 306 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 GY+I++QTEA+ +IDVN+G ++T +TNLEA IARQLRLR+L G+I+VDFI Sbjct: 307 GYLILDQTEAMTTIDVNTGGFVGVRNFDETIFKTNLEATHAIARQLRLRNLGGIIIVDFI 366 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488 DM+ + + + V ++L SL +DR RV + ++ GL+E++R+R R S+ + C C+ Sbjct: 367 DMDNEDHRQMVLQELARSLARDRTRVTLNGFTSLGLVEITRKRTRESLSHVLCEPCPVCQ 426 Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 G G I++ +V ILR V Q+ A + V+ L+++ ++ G Sbjct: 427 GRGEIKTAQTVCYEILREVVREHRQFQARGYRILAAQQVIDLFLDEESHSLAMLADFVGK 486 Query: 549 SINVVIGIELADKLFYI 565 + + + E + F + Sbjct: 487 PVTLQVEAEYNQEQFDV 503 >gi|224826114|ref|ZP_03699217.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002] gi|224601751|gb|EEG07931.1| ribonuclease, Rne/Rng family [Lutiella nitroferrum 2002] Length = 498 Score = 267 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 124/407 (30%), Positives = 213/407 (52%), Gaps = 2/407 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I++++ Q +LVQ++K+ G KGA ++T +SLAGR+ V +P I Sbjct: 90 QRQHPSEPQRIEKMLFEGQTVLVQVIKDPIGTKGARLSTQISLAGRFLVHLPQEEHIG-I 148 Query: 220 SRKITNPVDRKNLKEIARGLEVP-AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 S+KI N DR +LK L G I+RT+ + + E+ D YL +LW ++R+ Sbjct: 149 SQKIENEEDRLSLKARLEKLLPDGTPKGYIIRTSAETASDQELAADIGYLGKLWTDIRQR 208 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 +L L+YE+ L R +RD+ + +IV + Y +F + + + + + Sbjct: 209 SLTEPPQSLLYEDLPLAVRVLRDMVSESTEHVIVDSTENYSRMVEFAEQYVTNAVDKIAR 268 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y P+F GIE ++D V L GY+II+QTEA+ +IDVN+G ++T Sbjct: 269 YSGERPLFELHGIEAEIDRALARRVNLKFGGYLIIDQTEAMTTIDVNTGGFVGNRNFDET 328 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEA IARQLRLR+L G+I+VDFIDM+ +++ V +L +++ +DR RV + Sbjct: 329 IFKTNLEATHAIARQLRLRNLGGIIIVDFIDMDNEEHRSQVLNELAKAMARDRTRVTLNG 388 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 ++ GL+E++R+R R S+ + C C+G G I++ +V I R + Q+ A Sbjct: 389 FTSLGLVEITRKRTRESLAHVLCEPCPTCQGRGEIKTAQTVCYEIQREIVREARQFDAKG 448 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ G I++ + + F + Sbjct: 449 FRILAAQPVIDMFLDEESQSLAMLVDFIGKPISLSVETTYPQEQFDV 495 >gi|91203270|emb|CAJ72909.1| strongly similar to ribonuclease E (RNase E) [Candidatus Kuenenia stuttgartiensis] Length = 509 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 170/474 (35%), Positives = 288/474 (60%), Gaps = 4/474 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+L+ + + + E + + G++ ++E A ++ + A Sbjct: 18 PEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDIGLKKNGFLHA 77 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ +V + +G + P + R I++V++ + +LVQ+ KE G KG ++TTY+S Sbjct: 78 SDVLVPSEGKNQGEEADPPPVRHHR---IRDVLQQGKEILVQVTKESLGTKGPSLTTYIS 134 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP + +S+KIT +R+ LK+I L P +G I+RTAG +TK E+ Sbjct: 135 LPGRYLVLMPEVKRYG-VSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQQTKREL 193 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++DF YL++LW N+ + + AP ++Y+E +L+ R IRD++ +DI+EIIV E ++ Sbjct: 194 QKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSESVFKRT 253 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 ++F++++MP Y + ++ Y P+F GIE ++ ++ ++ L G +++ QTEALV+ Sbjct: 254 REFLRIIMPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQTEALVA 313 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+ + E+TA +TN+ AA+EIARQ+RLRDL G+IV+DFIDM +K+ ++VEK Sbjct: 314 IDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKHIQAVEK 373 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + +SLK+ RAR ++ +S FG +E++RQRIR S+ + + C +C G GY ++ S+ L Sbjct: 374 AIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKTVESLCL 433 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 +I+R V+ L I + +++DVV YL NQKR + E E + I + Sbjct: 434 NIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNKKIVIFTD 487 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 6/80 (7%) Query: 1 MAN------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54 M +MLI+A EE R+ +L +N +EEL E ++QI GNIY +V +EP+L Sbjct: 1 MEKTTKTKTRMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNL 60 Query: 55 QAAFVDYGGNRHGFLPFLEI 74 +AAFVD G ++GFL ++ Sbjct: 61 EAAFVDIGLKKNGFLHASDV 80 >gi|330831349|ref|YP_004394301.1| ribonuclease G [Aeromonas veronii B565] gi|328806485|gb|AEB51684.1| Ribonuclease G [Aeromonas veronii B565] Length = 489 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 209/413 (50%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAVKEKEQFQVGNIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ R + + + +A ++ G I+RTA ++E+++D +L RLW Sbjct: 136 SAHVGVSQRIESEAERERLKRTVAGYVDEL--GGYIIRTAAEGVGELELEQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E ++YE+ +L R +RD ++ +I V + + + K F +P Sbjct: 194 RKILERKQKYPPCKILYEDPSLAFRVVRDFVGAELDKIRVDSRQSFDQLKRFTGEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 ANKLEYYPGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA IAR LRLR+L G+I++DFIDM+ + + R V L+++L KDRA Sbjct: 314 RNLEETIFNTNVEATAAIARHLRLRNLGGIIIIDFIDMQSEDHRRRVLHSLEQALSKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C CKG G +++ SV ILR + Sbjct: 374 KTNVNGFSQLGLVEMTRKRTRESLEHVLCSECPECKGRGRVKTVESVCFEILREIIRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A V+ V YL ++ ++ E E G + VV + F + Sbjct: 434 AYDADQFTVYAAPAVADYLHGEESHSLAELEVFIGKQVRVVSEPLCGQEQFDV 486 >gi|88811884|ref|ZP_01127137.1| Ribonuclease E and G [Nitrococcus mobilis Nb-231] gi|88790768|gb|EAR21882.1| Ribonuclease E and G [Nitrococcus mobilis Nb-231] Length = 488 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 125/396 (31%), Positives = 222/396 (56%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I +++K +Q +LVQ++K+ G KGA +TT++++ R VL+P+ +R Sbjct: 90 ITDLLKEQQHVLVQVIKDPIGTKGARLTTHITIPSRLMVLLPDNPTVGISARIEEEAERA 149 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + + G G ILRTA T+ ++ D ++L +LW +++ + + L++ Sbjct: 150 RLRRIGEAFVAAGEGCGYILRTAAEGATEEALRCDRDFLGKLWKSIQVRSDLAQPETLIH 209 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + L RA+RDL + I+++ V + Y++ + F + +P A ++ Y+ PIF Sbjct: 210 GDLPLALRALRDLITEGIAKVWVDSWETYQKVQVFCEQFLPDIAELIEHYQGERPIFDLY 269 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 G+E ++ + + L S GY+II+QTEA+ +IDVN+G +E+T +TNLEAA+ Sbjct: 270 GVEDEIQRALERQTQLKSGGYLIIDQTEAMTTIDVNTGGYVGHRTLEETIFKTNLEAAQA 329 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDMEE+ + R V + L+++L++D + Q+ +S GL+EM+R Sbjct: 330 IARQLRLRNLGGIIIIDFIDMEEEDHRRQVLRALEKALERDHVKTQISGVSALGLVEMTR 389 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ + C C G G +++ +V I R + Q+ ++V T +VV Sbjct: 390 KRTRESLERVLCEPCRTCAGRGSLKTAETVCYEIAREILREARQFDVQKLLVLTSQEVVD 449 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +L+Q+ T+ E E+ G I + F + Sbjct: 450 LILDQESDTLAELESFIGKPIEFQAEPLYTQEQFDV 485 >gi|298373678|ref|ZP_06983667.1| ribonuclease G [Bacteroidetes oral taxon 274 str. F0058] gi|298274730|gb|EFI16282.1| ribonuclease G [Bacteroidetes oral taxon 274 str. F0058] Length = 516 Score = 266 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 143/563 (25%), Positives = 252/563 (44%), Gaps = 63/563 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +++IDA + E + +L + ++ E + + GNIYL KV ++ L A Sbjct: 2 KELIIDA-NNENVSIALLENKKLVEYAKDDLQQSYDVGNIYLGKVKKIMSGLNA------ 54 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 F++I Sbjct: 55 -------AFVDIG----------------------------------------------- 60 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 A E+ + NN V + D K + + I+ V+ Q++LV Sbjct: 61 GNKEAFIHYHDLGENFPTINNFVQKILNDRKRMPKFEKLPPLNKDGQIRSVLTAGQLILV 120 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q+ KE KGA ++ +S+AGR+ V+MP T ++S KI+N ++ L+++ ++ P Sbjct: 121 QVTKEPISTKGARLSGEISIAGRFMVMMPCTDNKTSVSSKISNREEKVRLRQLVHSIK-P 179 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 +I+RT + E+ + + L W+ + S L+ +E + + +RD Sbjct: 180 NDYSLIIRTIAEGKKVAELDNELKILKTRWEKTIDSLRKSKEVGLLSQESSRVVSIVRDF 239 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 D +I ++ K + E K++M+L+ P +A IV+ Y+ PIF G+ Q+ Sbjct: 240 VDNDYEQIYINEPKTFEEIKEYMQLIAPEHADIVKLYKGEIPIFDHFGVTRQIKVSFGRI 299 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAG 421 V Y+ I+QTEA+ IDVNSG R ED AL+ NL AAEEI RQLRLRD+ G Sbjct: 300 VPFKRGAYLTIDQTEAMFVIDVNSGTRVRATQNPEDNALEVNLLAAEEIFRQLRLRDIGG 359 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +IV+DFIDM+ K N V +++ + +K+DRAR + +S F ++E++RQRIR ++ +T Sbjct: 360 IIVIDFIDMDNKANMAKVYERMHQLMKQDRARHNILPLSKFCVMEITRQRIRPTISIATD 419 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541 + C C G G + + +++ + + H + YL + ++ Sbjct: 420 ETCPTCFGTGKSKPSILFTTQLEDKIDKIVNTLKIKKFTLCIHPFIAAYLNKGLISEKLK 479 Query: 542 YEARFGVSINVVIGIELADKLFY 564 ++ ++ ++ EL + Sbjct: 480 WKTKYSWGFRLLPMEELGFLQYK 502 >gi|88799729|ref|ZP_01115303.1| Ribonuclease G and E [Reinekea sp. MED297] gi|88777463|gb|EAR08664.1| Ribonuclease G and E [Reinekea sp. MED297] Length = 486 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 123/421 (29%), Positives = 213/421 (50%), Gaps = 2/421 (0%) Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 + + + IQ +++ Q L+VQ++K+ G KGA +TT LS+ RY Sbjct: 63 ERAAFIHASDIDHDRTDHESHKPIQSLVREGQALVVQVIKDPIGTKGARLTTALSIPSRY 122 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLK--EIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 V MP ++ R + K + + LE G ILRTA + EI+ D Sbjct: 123 LVFMPASNHIGVSQRIDGEEERDRLKKLVDHTKTLEEIEQGGFILRTAAEGVGEGEIRSD 182 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 YL R++ ++E + ++YE+ L R RD+ D+ +I + ++ + + +DF Sbjct: 183 MNYLKRVFRVLQERMTENEPATMIYEDLPLFLRVARDMIRVDVEKIRIDSKETFVKVQDF 242 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 + P + Y P+F +E ++ +V L S GY+II+QTEA+ +IDV Sbjct: 243 VTKYTPEVVDLFEYYPGERPVFDLFAVEDEISRALSRKVELKSGGYLIIDQTEAMTTIDV 302 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G +E+T +TNLEA I RQLRLR+L G+I++DFIDME++++ R V + L+ Sbjct: 303 NTGAFVGHRNLEETIFKTNLEAVSAICRQLRLRNLGGIIILDFIDMEDEEHRRQVHRMLE 362 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + L++D A+ +V +S GL+EM+R+R R S+ T+ C+ C+G G ++ ++ + Sbjct: 363 KHLERDHAKSKVTGVSELGLVEMTRKRTRESLEHVLTENCSVCQGKGRQKTAQTICYEVF 422 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R + Y +V VV LL+++ + + + E G I + + F Sbjct: 423 REILREERAYNNDQYLVLASQSVVDRLLDEESSNVADLEEFIGKPIRFQVEPMYTQEQFD 482 Query: 565 I 565 + Sbjct: 483 V 483 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++L++ + ETRV ++ + V+E+ E + I GNIY KV RV P +QAAFVD Sbjct: 1 MTSEILVNVT-PMETRVALVENGAVQEVYIERSQTRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G R F+ +I D Sbjct: 60 IGLERAAFIHASDIDHD 76 >gi|281416869|ref|ZP_06247889.1| ribonuclease, Rne/Rng family [Clostridium thermocellum JW20] gi|281408271|gb|EFB38529.1| ribonuclease, Rne/Rng family [Clostridium thermocellum JW20] Length = 497 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 128/573 (22%), Positives = 242/573 (42%), Gaps = 79/573 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D E RV +L D + EL E +++ GNIY +V V P +QAAF+D Sbjct: 1 MVSEIVVDVGI-NEKRVALLEDRELVELFIERNDCERLVGNIYRGRVESVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + IP D E + DV ++ Sbjct: 60 IGYEKNAFLYVGD------AIPQ----------KEFSEDDEEIYSDVKSYNIEEILRPGQ 103 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + T+ + + RQ++ Sbjct: 104 EITVQVTKEPIGTKGP------------------------------RVTTHITLPGRQMV 133 Query: 181 LVQIVKEERGNKGAA-VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 L+ ++ L + P I R ++ ++ K L Sbjct: 134 LLPNADYIGISRRIEDEEERAKLRKIAEKIKP--KNMGIIVRTVSEGKREEDFKNDLNFL 191 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 ++LW +++ + P ++++ ++I RA+ Sbjct: 192 -----------------------------VKLWAKIKQREQSGPVPRCLHKDLSVIYRAV 222 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD++ +I +++ + Y + + ++++ P+ V + +F I+ + Sbjct: 223 RDIFTWNIDRFVINDRQEYNKVLELVEMISPALKMRVEYFNKNIDLFEYYQIDSMIQKAL 282 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 +V L GY++I +TEAL IDVN+G+ + +EDT L+TNL+A +EI +QLRLRD+ Sbjct: 283 AKKVWLKCGGYIVIERTEALTVIDVNTGKYVGVNNLEDTVLRTNLDAVKEIGKQLRLRDI 342 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDM + ++ + V + LK+ LKKDR + V ++ GL+EM+R+++R + Sbjct: 343 GGIIIIDFIDMHDPEHQKQVLEALKQVLKKDRTKTTVVGMTGLGLIEMTRKKVREGLESM 402 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C YC+G G I S SVA ++ + + +Y + A+ I+V H V L + + Sbjct: 403 MLQDCPYCEGRGKILSPESVARNVEKEISKYFTKTIANAIMVEVHPTVAEVLRGEDNDNL 462 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + F + + E+ + I++ Sbjct: 463 ARIQNLFNKKVIIKPSAEVGHEEVKIKEVDIDT 495 >gi|117619516|ref|YP_854933.1| ribonuclease G [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560923|gb|ABK37871.1| ribonuclease G [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 489 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 209/413 (50%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAVKEKEQFQAGNIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ R + + + +A ++ G I+RTA + E+++D +L RLW Sbjct: 136 SAHVGVSQRIESEAERERLKRTVAGYVDEL--GGYIIRTAAEGVGEQELEQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E ++YE+ +L R +RD ++ +I V + + + K F + +P Sbjct: 194 RKILERKQKYPPCKILYEDPSLAFRVVRDFVGAELDKIRVDSRQSFDQLKRFTEEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 ANKLEYYSGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA IAR LRLR+L G+I++DFIDM+ + + R V L+++L KDRA Sbjct: 314 RNLEETIFNTNVEATAAIARHLRLRNLGGIIIIDFIDMQSEDHRRRVLHSLEQALSKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C CKG G +++ SV ILR + Sbjct: 374 KTNVNGFSQLGLVEMTRKRTRESLEHVLCSECPECKGRGRVKTVESVCFEILREIIRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A V+ V YL ++ ++ E E G + VV + F + Sbjct: 434 AYDADQFTVYAAPAVADYLRGEESHSLAELEVFIGKQVRVVSEPLCGQEQFDV 486 >gi|221066394|ref|ZP_03542499.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1] gi|220711417|gb|EED66785.1| ribonuclease, Rne/Rng family [Comamonas testosteroni KF-1] Length = 495 Score = 266 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 229/486 (47%), Gaps = 6/486 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+++ + + E + G+V + + A E +A Sbjct: 11 PQETRVAIVENGAVQELHMERPLERGLVGNVYLGKVSRVLPGMQSAFIDIGLE----RAA 66 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 V + + G +K + I++ + Q ++VQ++K+ G KGA ++T +S Sbjct: 67 FLHVADVWQRQESGEAPMFARKDQPLIPIEKQVFEGQSIMVQVIKDPIGTKGARLSTQIS 126 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 +AGR V +P + N D R L+E+ + G G ILRT G + Sbjct: 127 IAGRLLVFLPQDDHIGISQKIPQNERDALRARLQELVGTKDGGGGGGFILRTNGEESSDA 186 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E+ D YL + W +++ A +++++ NL++R +RDL ++ I + + + Sbjct: 187 ELADDIRYLRKTWARIKDTAQKLPVMSVLHQDLNLLQRVLRDLVGENTQSIRIDSREQFA 246 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 K F + MP+ + Y+ PIF I+ ++ V L S GY+I++QTEAL Sbjct: 247 LLKSFGQEYMPAAVPKLALYKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEAL 306 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +IDVN+G +DT +TNLEAA IARQLRLR+L G+++VDFIDM +++ V Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAHAIARQLRLRNLGGIVIVDFIDMVREEHQGEV 366 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + + L +DR + G S GL+EM+R+R R S+ + C C G G +++ S+ Sbjct: 367 LSEFRRQLARDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCAACSGKGNVKTARSI 426 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 +LR + Q+ H V VV L+++ + G I++ +A Sbjct: 427 CYEVLREILREARQFNPHEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMA 486 Query: 560 DKLFYI 565 + + I Sbjct: 487 QEQYDI 492 >gi|260061539|ref|YP_003194619.1| Ribonuclease G [Robiginitalea biformata HTCC2501] gi|88785671|gb|EAR16840.1| Ribonuclease G [Robiginitalea biformata HTCC2501] Length = 523 Score = 266 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 146/564 (25%), Positives = 247/564 (43%), Gaps = 62/564 (10%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+ LI S+ +L++ ++ EL + + K G+I LAK+ + L AAFV+ G Sbjct: 5 NRELIVRSNSNSVDFALLKNGKLIELHKDEDDHKFNVGDIMLAKIRKPVTGLNAAFVNVG 64 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 + FL + ++ P +++LK +A++ Sbjct: 65 YEKDAFLHYHDLGPQ--------LKSMLKFLKLARSGRLK-------------------- 96 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 + NFS E + + S + V N + E + K R Sbjct: 97 DFSLKNFSFEKDIDKNGSIKDVVKPNQTMLVQIVKEPISTKGPR---------------- 140 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 +++ LS+AGRY +L+P + + + + + + P Sbjct: 141 -------------ISSELSIAGRYLILVPFSDRVSVSQKIGSKEEKDRLKR--LVKSIKP 185 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G GVI+RT + E+ +D E LM W ++ + + P V E N +RD+ Sbjct: 186 KGFGVIIRTVAEGKKVAELDKDLENLMSKWISMCKKINRASTPSKVLVELNRASSILRDV 245 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 + S I V E + + KD++ + P IV+ Y PIF + GIE Q+ + Sbjct: 246 FNDSFSGIHVDDETLFNQIKDYVHEIAPDKESIVKLYSSNVPIFEKFGIERQIKTSFGRT 305 Query: 363 VTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 ++ Y++I TEAL IDVNSG RST+ EDTAL+ NL AA E+ARQLRLRD+ G Sbjct: 306 ASMSKGAYLVIEHTEALHVIDVNSGNRSTKAKNQEDTALEVNLIAAAEVARQLRLRDMGG 365 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +IV+DFIDM + + + L++ +K DRA+ ++ S FGL++++RQR+R V TT Sbjct: 366 IIVIDFIDMVRPDHRKKLYNHLRDEMKDDRAKHKILPPSKFGLVQITRQRVRPEVNIKTT 425 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLL-QYTAHNIIVHTHSDVVLYLLNQKRATIV 540 +V G + + + I +E + + I ++ H + YL + Sbjct: 426 EVDPSGNGQ-EVEAPIVLIEKISDELERIMKGEGREKAITLNAHPFIAAYLTKGFPSIRS 484 Query: 541 EYEARFGVSINVVIGIELADKLFY 564 ++ F I + + + Sbjct: 485 KWFLEFKKWIKIQPRDAYSYLEYR 508 >gi|264679028|ref|YP_003278935.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2] gi|262209541|gb|ACY33639.1| ribonuclease, Rne/Rng family [Comamonas testosteroni CNB-2] Length = 495 Score = 266 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 229/486 (47%), Gaps = 6/486 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+++ + + E + G++ + + A E +A Sbjct: 11 PQETRVAIVENGAVQELHMERPLERGLVGNIYLGKVSRVLPGMQSAFIDIGLE----RAA 66 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 V + + G +K + I++ + Q ++VQ++K+ G KGA ++T +S Sbjct: 67 FLHVADVWQRQESGEAPMFARKDQPLTPIEKQVFEGQSIMVQVIKDPIGTKGARLSTQIS 126 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 +AGR V +P + N D R L+E+ E G G ILRT G + Sbjct: 127 IAGRLLVFLPQDDHIGISQKIPQNERDALRARLQELVGTKEGGGGGGFILRTNGEESSDA 186 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E+ D YL + W +++ A +++++ NL++R +RDL ++ I + + + Sbjct: 187 ELADDIRYLRKTWGRIKDAAQKLPVMSVLHQDLNLLQRVLRDLVGENTQSIRIDSREQFA 246 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 K F + MP+ + Y+ PIF I+ ++ V L S GY+I++QTEAL Sbjct: 247 LLKSFGQEYMPAAVPKLALYKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEAL 306 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +IDVN+G +DT +TNLEAA IARQLRLR+L G+++VDFIDM +++ V Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAHAIARQLRLRNLGGIVIVDFIDMVREEHQGEV 366 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + + L +DR + G S GL+EM+R+R R S+ + C C G G +++ S+ Sbjct: 367 LSEFRRQLARDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCEACSGKGNVKTARSI 426 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 +LR + Q+ H V VV L+++ + G I++ +A Sbjct: 427 CYEVLREILREARQFNPHEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMA 486 Query: 560 DKLFYI 565 + + I Sbjct: 487 QEQYDI 492 >gi|299530008|ref|ZP_07043435.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44] gi|298721988|gb|EFI62918.1| ribonuclease, Rne/Rng family [Comamonas testosteroni S44] Length = 495 Score = 266 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 229/486 (47%), Gaps = 6/486 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+++ + + E + G++ + + A E +A Sbjct: 11 PQETRVAIVENGAVQELHMERPLERGLVGNIYLGKVSRVLPGMQSAFIDIGLE----RAA 66 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 V + + G +K + I++ + Q ++VQ++K+ G KGA ++T +S Sbjct: 67 FLHVADVWQRQENGEAPMFARKDQPLTPIEKQVFEGQSIMVQVIKDPIGTKGARLSTQIS 126 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVD--RKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 +AGR V +P + N D R L+E+ E G G ILRT G + Sbjct: 127 IAGRLLVFLPQDDHIGISQKIPQNERDALRARLQELVGTKEGGGGGGFILRTNGEESSDA 186 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E+ D YL + W +++ A +++++ NL++R +RDL ++ I + + + Sbjct: 187 ELADDIRYLRKTWARIKDAAQKLPVMSVLHQDLNLLQRVLRDLVGENTQSIRIDSREQFA 246 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 K F + MP+ + Y+ PIF I+ ++ V L S GY+I++QTEAL Sbjct: 247 LLKSFGQEYMPAAVPKLALYKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEAL 306 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +IDVN+G +DT +TNLEAA IARQLRLR+L G+++VDFIDM +++ V Sbjct: 307 TTIDVNTGGYVGARNFDDTIFKTNLEAAHAIARQLRLRNLGGIVIVDFIDMVREEHQGEV 366 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + + L +DR + G S GL+EM+R+R R S+ + C C G G +++ S+ Sbjct: 367 LSEFRRQLARDRVKTMAGGFSQLGLVEMTRKRTRESLAHMLCEPCEACSGKGNVKTARSI 426 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 +LR + Q+ H V VV L+++ + G I++ +A Sbjct: 427 CYEVLREILREARQFNPHEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMA 486 Query: 560 DKLFYI 565 + + I Sbjct: 487 QEQYDI 492 >gi|260767289|ref|ZP_05876229.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio furnissii CIP 102972] gi|260617696|gb|EEX42875.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio furnissii CIP 102972] gi|315181288|gb|ADT88202.1| ribonuclease G [Vibrio furnissii NCTC 11218] Length = 489 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 118/565 (20%), Positives = 207/565 (36%), Gaps = 79/565 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGVLQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +I P + E+ Q +++ V G + Sbjct: 60 IGLDKAAFLHASDIVPH---------TECVAETEKQQFQVRDISELVRQGQDIVVQVVKD 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + S S+V + E ++ Sbjct: 111 PLGTKGARLTTDITLPSRYLVYMPGASHVGVSQRIESEAERERL---------------- 154 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + V G I R + L + A L+ Sbjct: 155 ------------------------KNVVAHYCDEHGGFIIRTAAEAAKEQELSQDAAFLK 190 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G + R +R+ + + R+ + L + E NL++ Sbjct: 191 RLWGKVMERREKYKNRST--LYGELGLAQRILRDFVGTDLTKILVDSRLEYENLLEFTSE 248 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + + G+K + D + S R V + I ++ + Sbjct: 249 FVPELTDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTI----- 303 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 D+N+G +E+T TN+EA + IARQLRLR+L Sbjct: 304 ----------------------DINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLG 341 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM +++ + V L +L KDR + + + GL+EM+R+R R S+ Sbjct: 342 GIIIIDFIDMLSEEHRKRVLTSLDAALNKDRVKTNINGFTQLGLVEMTRKRTRESIEHVL 401 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C+G G +++ +V ILR + Y A +V+ V L + ++ Sbjct: 402 CSTCPTCEGRGSVKTVETVCFEILREITRVNRAYDADQFVVYASPAVAETLQGDESHSLA 461 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + + + F + Sbjct: 462 ELEVFIGKEVRIQAEPLYVQEQFDV 486 >gi|320352618|ref|YP_004193957.1| RNAse E [Desulfobulbus propionicus DSM 2032] gi|320121120|gb|ADW16666.1| RNAse E [Desulfobulbus propionicus DSM 2032] Length = 750 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 179/492 (36%), Positives = 275/492 (55%), Gaps = 3/492 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS- 140 P R AL+++ + + + T ++ S+E A T + Sbjct: 257 PEECRIALVEDGRLESFHVTTIDREPTKNNIYKGRIVSIEANLQAAFVDIGTGRNGFLPF 316 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 +DV + + ++ I+EV++ Q +LVQ+VKE GNKGA +TTYL Sbjct: 317 NEIHPEYYRQDVNERCRNLIAQHQWKKLKIEEVMQKGQEVLVQVVKEVTGNKGANMTTYL 376 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SL GR VLMP S ISRKI R NL+EI E+P G+G I+RTA A TK Sbjct: 377 SLPGRCLVLMPG-SDSAGISRKIVGEERRTNLREIMSEFEIPEGIGYIIRTASAETTKAI 435 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 +++D L+ LW+ +++ AP LVYEE + + R +RD + +I EI+V E+ Sbjct: 436 LEKDLNTLLELWEEIKKRGQTMDAPALVYEEQDTVVRFLRDHFFPEIKEILVDTEESLDN 495 Query: 321 AKDFMKLL-MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 F++ L VR + PIF + IE Q++S+ + +V LPS G ++IN TEAL Sbjct: 496 VNAFIEQLPAKQRQVKVRLHRSAKPIFNQYNIEEQIESIFKPQVPLPSGGSIVINPTEAL 555 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSGR+++ ++T N+EAA E+ARQLRLRDL GLIVVDFIDM KK+ R V Sbjct: 556 VAIDVNSGRTSKNSDFDETIFLANMEAAAELARQLRLRDLGGLIVVDFIDMRNKKHIREV 615 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 E+++K S+K+D+A+V + IS FGL+++SRQ++ + + + + + C YC+G G +RS ++ Sbjct: 616 ERQVKMSMKRDKAKVDISKISRFGLMQISRQKMGAPIEKGSYRTCEYCQGRGTVRSVETL 675 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 AL LR ++ + + + DV YLLN+KRA + E EA+ I+++ +E+ Sbjct: 676 ALYYLRRIQTGITRKKVGRVECRFPLDVAQYLLNKKRAELAELEAKHRARIDIIPRVEMK 735 Query: 560 DKLFYIEKGSPV 571 I+ Sbjct: 736 PSEHQIDYLEAE 747 >gi|294787664|ref|ZP_06752908.1| ribonuclease G [Simonsiella muelleri ATCC 29453] gi|294483957|gb|EFG31640.1| ribonuclease G [Simonsiella muelleri ATCC 29453] Length = 498 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 112/407 (27%), Positives = 213/407 (52%), Gaps = 2/407 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q LLVQ++K+ +KGA ++T +SLAGR+ V +P I Sbjct: 90 QKQNPDETQRIEHMLFEGQTLLVQVIKDPINSKGARLSTQISLAGRFLVHLPQDEHIG-I 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPA-GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 S++I N +R +L+E L G I+RT+ + T E++ D +YL ++W+N+++ Sbjct: 149 SQRIENEEERDSLRERLNALLPENACHGYIIRTSAETATDHELQADIDYLTKVWENIQKQ 208 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 A + L+Y++ L R +RD++ + +I+ + Y + F +L + A +R Sbjct: 209 AKTCLPESLLYQDLPLSLRMLRDMFNDNTVQILADSKLNYEKMAQFAQLYVQGAADKLRL 268 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 ++ P+F G+E ++ + V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 FQGERPLFETYGVESAINQALKPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGLRNFDET 328 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEA IAR+LRLR+L G+I++DFIDM ++ +V ++ ++L DR RV + Sbjct: 329 IFKTNLEACYAIARELRLRNLGGMILIDFIDMTLPEHREAVLQEFAKALSLDRTRVTLNG 388 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 ++ GL+E++R+R R ++ + C C+G G +++ +V I R + ++ Sbjct: 389 FTSLGLVELTRKRTRENLNHVLCEFCPVCEGRGRLKTAQTVCYEIQREIVRESRRFDVKQ 448 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ G I++ + + + I Sbjct: 449 FRIIASQPVIDLFLDEEAQSLAMLIDFIGKPISLETDRYYSQEQYDI 495 >gi|307544504|ref|YP_003896983.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581] gi|307216528|emb|CBV41798.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581] Length = 487 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 124/417 (29%), Positives = 218/417 (52%), Gaps = 3/417 (0%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + Q I ++++ Q L+VQ+ K+ G KGA +TT+LS+ RY V MP Sbjct: 68 IHAHEVMPPGTPADEQVSISQLLQEGQSLVVQVTKDPIGTKGARLTTHLSVPSRYLVYMP 127 Query: 212 NTSKGETISRKITNPVDRKNLKEI---ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 ++ R + + ++ + G G I+RTA T E+ D +L Sbjct: 128 DSPHNGVSQRIEDDGERERLRAQVGAALSEQTLEVGGGFIVRTAAEGVTDEELAGDMHFL 187 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 +RLW V E + + AP ++Y++ L R +RD+ DI ++ + + + + +F + Sbjct: 188 LRLWRKVSERRVTASAPSVIYDDLPLFMRTLRDVMRDDIEKVRIDSRENHVKLLEFAEEF 247 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 MP + Y PIF +E ++ +V L S GY++I+ TEA+ +IDVN+G Sbjct: 248 MPDAVERIEHYAGERPIFDLYSVEDEIQKALARKVQLKSGGYLVIDPTEAMTTIDVNTGG 307 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +E+T +TNLEAA IARQLRLR+L G+I++DFIDME+ ++ R V + L+++L+ Sbjct: 308 YVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDTEHQRQVLRVLEKALE 367 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 +D A+ + ++ GL++++R+R R S+ ++ + C C+G G +++ SV I R + Sbjct: 368 RDHAKTKCTGVTELGLVQLTRKRTRESLEQTLCEPCPACEGRGTLKTPESVCYEIFREIL 427 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y+A V VV LL+++ A + + E G +I + + + + I Sbjct: 428 REERAYSAETYTVLAAQSVVDRLLDEESAAVADLEEFIGKTIRFQVESHYSQEQYDI 484 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV V+ + ++E E ++ I GNIY +V RV P +QAAFVD Sbjct: 1 MSGEVLINLT-PMETRVAVVENGVLQEAFIERARRRGIVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G +R F+ E+ P Sbjct: 60 IGLDRAAFIHAHEVMP 75 >gi|237747746|ref|ZP_04578226.1| RNase G [Oxalobacter formigenes OXCC13] gi|229379108|gb|EEO29199.1| RNase G [Oxalobacter formigenes OXCC13] Length = 487 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 110/414 (26%), Positives = 206/414 (49%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++++ + Q ++V+++K+ G KGA ++T +S+AGR V +P Sbjct: 71 DDIFEAHQDKTSADKPVPIEKMLTDGQSIMVRVIKDPIGTKGARLSTQISIAGRMLVYLP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 R + + + + G I+RT + ++K D +L ++ Sbjct: 131 EEPHIGISQRILDEKERESLKSRLQQLMAPDEKGGYIIRTMAEDASDSDLKTDASFLEKI 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++E A + P L+Y++ NL +R +RD + + I+V E+ + + ++F K+ P Sbjct: 191 WKTLKEKAYVTPPPALLYQDLNLAERVLRDFVHEKTNRILVDSEEEFLKLQEFAKIYTPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + +E P+F +E ++ V L S GY+I++QTEA+ +IDVN+G Sbjct: 251 ILDRLACHEGDRPLFDLYNVEEEIQLALSRRVNLKSGGYLIVDQTEAMTTIDVNTGGFVN 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +DT +TNLEAA IARQLRLR+L G+I++DFIDM ++ +V +L+++L D+ Sbjct: 311 GRTFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMVNPEHRNAVMDELRKTLAHDK 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 +V V S GL+EM+R+R R S+ + C C+G G I++ ++ I+R + Sbjct: 371 TKVSVSDFSVLGLVEMTRKRTRESLSHILCEPCPVCQGRGEIKTPQTICYEIMRDIMREA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Q++ + VV L ++ + +++ + A + + Sbjct: 431 KQFSPKEFRILASQIVVDLFLEEESQHLAALGDMIEKPVSLQVEPTYAQWQYEV 484 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ + +ETR+ ++ + +EL E + + GNIYL +V RV P +Q+AF+D Sbjct: 1 MKEDILINIT-PQETRIAIVSEGTTQELHIERSLTRGLAGNIYLGRVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHIDDI 73 >gi|145300792|ref|YP_001143633.1| ribonuclease G [Aeromonas salmonicida subsp. salmonicida A449] gi|142853564|gb|ABO91885.1| ribonuclease G [Aeromonas salmonicida subsp. salmonicida A449] Length = 489 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 210/413 (50%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAVKEKEQFQAGNIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ R + + + +A ++ G I+RTA + E+++D +L RLW Sbjct: 136 SAHVGVSQRIESEAERERLKRTVAGYVDDL--GGYIIRTAAEGVGEQELEQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E ++YE+ +L R +RD ++ +I V + + + K F + +P Sbjct: 194 RKILERKHKYPPCKILYEDPSLAFRVVRDFVGAELDKIRVDSRQSFDQLKRFTEEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 AGKLEYYPGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA IAR LRLR+L G+I++DFIDM+ + + R V L+++L KDRA Sbjct: 314 RNLEETIFNTNVEATAAIARHLRLRNLGGIIIIDFIDMQSEDHRRRVLHSLEQALAKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C CKG G +++ SV ILR + Sbjct: 374 KTNVNGFSQLGLVEMTRKRTRESLEHVLCSECPECKGRGRVKTVESVCFEILREIIRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A V+ V+ YL ++ ++ E E G + VV + F + Sbjct: 434 AYDADQFTVYAAPAVIDYLRGEESHSLAELEVFIGKQVRVVSEPLCGQEQFDV 486 >gi|262281201|ref|ZP_06058983.1| ribonuclease G [Acinetobacter calcoaceticus RUH2202] gi|262257432|gb|EEY76168.1| ribonuclease G [Acinetobacter calcoaceticus RUH2202] Length = 488 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 123/412 (29%), Positives = 215/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ Q L VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 75 NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ I ++ VI+RTA + EI RD YL +LW+ Sbjct: 135 GVSQRIESEEERDR-LRNIIESIQSEHNLPGSVIVRTAAEGVDEAEIARDMCYLSKLWEY 193 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL ++ ++I V + + + +F++ +P+ Sbjct: 194 IQRKQIDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHAKLLEFVEEFVPNMQS 253 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G++++DFIDM+E + V ++ ++ L++D A+ Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGILIIDFIDMQEATHREEVMRQFEKMLERDHAKT 373 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 5 MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 64 IGLSRTAFLHINDM 77 >gi|59710983|ref|YP_203759.1| ribonuclease G [Vibrio fischeri ES114] gi|197336147|ref|YP_002155133.1| ribonuclease G [Vibrio fischeri MJ11] gi|59479084|gb|AAW84871.1| ribonuclease G [Vibrio fischeri ES114] gi|197317637|gb|ACH67084.1| ribonuclease G [Vibrio fischeri MJ11] Length = 489 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I +++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVSENEKRQFQVRDISQLVHQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA ++ EI +D +L RLW Sbjct: 136 ASHVGVSQRIESEKERNR-LKDTVSDYCDEFG-GFIIRTAAEGASEAEISQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + ++Y E L +R +RD ++ I V + + + K+F +P Sbjct: 194 HKVIERRKKNKTKSMLYGELGLDQRILRDFVGTELDLIRVDSKLAFEKLKEFTTEFVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TKKLEYYSGDKPIFDMYETENEIQRALDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V + L +L+KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMLSEEHRRRVLQSLGSALEKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCGQCPTCEGRGAVKTVESVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + + + F + Sbjct: 434 AYDSDKFVVYASVAVADALEGEESHALAELELFIGKQVKIQAEPLYIQEQFDV 486 >gi|115352390|ref|YP_774229.1| ribonuclease [Burkholderia ambifaria AMMD] gi|115282378|gb|ABI87895.1| RNAse G [Burkholderia ambifaria AMMD] Length = 489 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 201/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSEELAGDVTYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D + I V + Y+ +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQRLAEFADEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|37681114|ref|NP_935723.1| ribonuclease G [Vibrio vulnificus YJ016] gi|37199864|dbj|BAC95694.1| ribonuclease G and E [Vibrio vulnificus YJ016] Length = 491 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 78 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 137 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA E+ +D +L RLW Sbjct: 138 ASHVGVSQRIESESERERLKK--IVSHYCDEHGGFIIRTAAEGADGKELSQDAAFLKRLW 195 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I+V + + K+F +P Sbjct: 196 LKVMERRSKYKTRSTLYGELGLAQRILRDFVGTELDKILVDSRQEFENLKEFTSEYVPEL 255 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 256 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 315 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V L+ +L KDR Sbjct: 316 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSSEEHRKRVLTSLENALSKDRV 375 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 376 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 435 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + + E E G + + + F + Sbjct: 436 AYDADKFVVYASPAVADALHGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 488 >gi|27364838|ref|NP_760366.1| ribonuclease G [Vibrio vulnificus CMCP6] gi|320155228|ref|YP_004187607.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio vulnificus MO6-24/O] gi|27360983|gb|AAO09893.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio vulnificus CMCP6] gi|319930540|gb|ADV85404.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio vulnificus MO6-24/O] Length = 489 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESESERERLKK--IVSHYCDEHGGFIIRTAAEGADGKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I+V + + K+F +P Sbjct: 194 LKVMERRSKYKTRSTLYGELGLAQRILRDFVGTELDKILVDSRQEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSSEEHRKRVLTSLENALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + + E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVADALHGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|170699949|ref|ZP_02890977.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10] gi|171320920|ref|ZP_02909915.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5] gi|172061261|ref|YP_001808913.1| ribonuclease [Burkholderia ambifaria MC40-6] gi|170135154|gb|EDT03454.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10] gi|171093812|gb|EDT38948.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5] gi|171993778|gb|ACB64697.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MC40-6] Length = 489 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 201/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSEELAGDVTYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D + I V + Y+ +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFSNDDTTRIQVDSRETYQRLAEFADEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|107023239|ref|YP_621566.1| ribonuclease [Burkholderia cenocepacia AU 1054] gi|116690322|ref|YP_835945.1| ribonuclease [Burkholderia cenocepacia HI2424] gi|170733660|ref|YP_001765607.1| ribonuclease [Burkholderia cenocepacia MC0-3] gi|105893428|gb|ABF76593.1| RNAse G [Burkholderia cenocepacia AU 1054] gi|116648411|gb|ABK09052.1| RNAse G [Burkholderia cenocepacia HI2424] gi|169816902|gb|ACA91485.1| ribonuclease, Rne/Rng family [Burkholderia cenocepacia MC0-3] Length = 489 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 201/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D + I V + Y+ +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLSEFAGEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|302879872|ref|YP_003848436.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2] gi|302582661|gb|ADL56672.1| ribonuclease, Rne/Rng family [Gallionella capsiferriformans ES-2] Length = 484 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 118/410 (28%), Positives = 203/410 (49%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + I++++ Q LLVQ++KE G+KGA +TT LS AGR V +P + Sbjct: 72 DIWENSNSGIEAKPIEKILFEGQNLLVQVIKEPIGSKGARLTTQLSFAGRLLVFLPQEMR 131 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R ++ L G I+RT ++ D YL +LW N+ Sbjct: 132 IGVSQRIEGTEQRDALRAKLQAILPPDHHGGYIIRTVAEAKDDAHFAIDIAYLDKLWSNL 191 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + A + AP L+Y+E ++ R +RD ++ + I++ + +F A++ Sbjct: 192 QTAAKTASAPQLLYQELDISLRVLRDFVSEETARILIDSRSTRNKMLEFADNYNADAAQL 251 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F IE +++ V L S GY+II+QTEAL ++DVN+G Sbjct: 252 LEHYTGARPLFDMYNIEEEIERALSKRVDLKSGGYLIIDQTEALTTVDVNTGGFVGVRNF 311 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEA + IARQLRLR+L G+I+ DFIDM+ ++ +V ++ K++L +D R+ Sbjct: 312 DDTIFKTNLEATQVIARQLRLRNLGGIIICDFIDMDNLQHRDAVLEEFKKALARDHTRIS 371 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V S+ GL+EM+R+R R S+ + C CKG G +++ +V ILR + Q+ Sbjct: 372 VNNFSSLGLVEMTRKRTRESLAHVLCEPCPTCKGRGEVKTAQTVCYEILREIVREARQFD 431 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A + V+ L ++ + I++++ + + + + Sbjct: 432 AREYRILASQQVIDLFLEEESQALAGLSDFIEKPISMLVENQYNQEQYDV 481 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +ETRV V++ V+EL E + I GN+YL ++ RV P +Q+AF+D Sbjct: 1 MSEEILINVT-PQETRVAVMQLGVVQELHIERGSNRGIAGNVYLGRIKRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERSAFLHVADI 73 >gi|53725450|ref|YP_103487.1| ribonuclease G [Burkholderia mallei ATCC 23344] gi|67640608|ref|ZP_00439408.1| ribonuclease, Rne/Rng family [Burkholderia mallei GB8 horse 4] gi|121598898|ref|YP_992408.1| ribonuclease G [Burkholderia mallei SAVP1] gi|124383360|ref|YP_001026789.1| ribonuclease G [Burkholderia mallei NCTC 10229] gi|126449959|ref|YP_001079926.1| ribonuclease [Burkholderia mallei NCTC 10247] gi|167000918|ref|ZP_02266719.1| ribonuclease, Rne/Rng family [Burkholderia mallei PRL-20] gi|254175767|ref|ZP_04882427.1| ribonuclease, Rne/Rng family [Burkholderia mallei ATCC 10399] gi|254202169|ref|ZP_04908532.1| ribonuclease, Rne/Rng family [Burkholderia mallei FMH] gi|254207496|ref|ZP_04913846.1| ribonuclease, Rne/Rng family [Burkholderia mallei JHU] gi|254359914|ref|ZP_04976184.1| ribonuclease, Rne/Rng family [Burkholderia mallei 2002721280] gi|52428873|gb|AAU49466.1| ribonuclease G [Burkholderia mallei ATCC 23344] gi|121227708|gb|ABM50226.1| ribonuclease G [Burkholderia mallei SAVP1] gi|124291380|gb|ABN00649.1| ribonuclease G [Burkholderia mallei NCTC 10229] gi|126242829|gb|ABO05922.1| ribonuclease, Rne/Rng family [Burkholderia mallei NCTC 10247] gi|147746416|gb|EDK53493.1| ribonuclease, Rne/Rng family [Burkholderia mallei FMH] gi|147751390|gb|EDK58457.1| ribonuclease, Rne/Rng family [Burkholderia mallei JHU] gi|148029154|gb|EDK87059.1| ribonuclease, Rne/Rng family [Burkholderia mallei 2002721280] gi|160696811|gb|EDP86781.1| ribonuclease, Rne/Rng family [Burkholderia mallei ATCC 10399] gi|238521361|gb|EEP84813.1| ribonuclease, Rne/Rng family [Burkholderia mallei GB8 horse 4] gi|243063221|gb|EES45407.1| ribonuclease, Rne/Rng family [Burkholderia mallei PRL-20] Length = 488 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 116/399 (29%), Positives = 197/399 (49%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 87 HQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEA 146 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + G I+RT T E+ D YL + W + Sbjct: 147 EREAVRARLTAVIPSDEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTS 206 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++ +L +R +RD D + I V + ++ +F P+ + + Y P+F Sbjct: 207 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVEFAAEFTPAVSPKLHHYTGKRPLF 266 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEA Sbjct: 267 DLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 326 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+E Sbjct: 327 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVE 386 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C C+G G +++ +V ILR + Q+ V Sbjct: 387 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQ 446 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L+++ + G +++ + L+ + + I Sbjct: 447 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GN+YL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|78067097|ref|YP_369866.1| ribonuclease G [Burkholderia sp. 383] gi|77967842|gb|ABB09222.1| RNAse G [Burkholderia sp. 383] Length = 489 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 201/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQSGTPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPADEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D + I V + Y+ +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLSEFAGEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|293610977|ref|ZP_06693276.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826629|gb|EFF84995.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123293|gb|ADY82816.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter calcoaceticus PHEA-2] Length = 469 Score = 264 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 123/412 (29%), Positives = 214/412 (51%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ Q L VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 56 NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 115 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ I G++ VI+RTA + EI +D YL +LW+ Sbjct: 116 GVSQRIESEEERDR-LRNIIEGIQSEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 174 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ + P L++EE L +R IRDL ++ ++I V + + + +F+ +P+ Sbjct: 175 IQRKQTDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHAKLLEFVDEFVPNMKS 234 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 235 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 294 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G++++DFIDM+E + V ++ ++ L++D A+ Sbjct: 295 LEDTVFKTNMEATQVIARQLRLRNLGGILIIDFIDMQEATHREEVMRQFEKMLERDHAKT 354 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 355 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 414 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 415 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 466 Score = 111 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 + ++ + V EL E K+ + GNIY KV RV P +QAAFVD G +R FL ++ Sbjct: 1 MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDM 58 >gi|153833993|ref|ZP_01986660.1| ribonuclease G [Vibrio harveyi HY01] gi|148869637|gb|EDL68623.1| ribonuclease G [Vibrio harveyi HY01] Length = 489 Score = 264 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 202/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNHYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I+V Y K+F +P Sbjct: 194 QKVMERRAKYKTRSTLYGELGLAQRILRDFVGTELDKIMVDSRLEYENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMLSDEHRKRVLTSLETALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A N +V+ V LL + + E E G + + + F + Sbjct: 434 AYDADNFVVYASPYVAETLLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|254247612|ref|ZP_04940933.1| Ribonucleases G and E [Burkholderia cenocepacia PC184] gi|124872388|gb|EAY64104.1| Ribonucleases G and E [Burkholderia cenocepacia PC184] Length = 489 Score = 264 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 201/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D + I V + Y+ +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLSEFAGEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENVEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|125972682|ref|YP_001036592.1| ribonuclease G [Clostridium thermocellum ATCC 27405] gi|125712907|gb|ABN51399.1| RNAse G [Clostridium thermocellum ATCC 27405] Length = 497 Score = 264 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 127/563 (22%), Positives = 239/563 (42%), Gaps = 79/563 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D E RV +L D + EL E +++ GNIY +V V P +QAAF+D Sbjct: 1 MVSEIVVDVGI-NEKRVALLEDRELVELFIERNDCERLVGNIYRGRVESVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + IP D E + DV ++ Sbjct: 60 IGYEKNAFLYVGD------AIPQ----------KEFSEDDEEIYSDVKSYNIEEILRPGQ 103 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + T+ + + RQ++ Sbjct: 104 EITVQVTKEPIGTKGP------------------------------RVTTHITLPGRQMV 133 Query: 181 LVQIVKEERGNKGAA-VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 L+ ++ L + P I R ++ ++ K L Sbjct: 134 LLPNADYIGISRRIEDEEERAKLRKIAEKIKP--KNMGIIVRTVSEGKREEDFKSDLNFL 191 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 ++LW +++ + P ++++ ++I RA+ Sbjct: 192 -----------------------------VKLWAKIKQREQSGPVPRCLHKDLSVIYRAV 222 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD++ +I +++ + Y + + ++++ P+ V + +F I+ + Sbjct: 223 RDIFTWNIDRFVINDRQEYNKVLELVEMISPALKMRVEYFNKNIDLFEYYQIDSMIQKAL 282 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 +V L GY++I +TEAL IDVN+G+ + +EDT L+TNL+A +EI +QLRLRD+ Sbjct: 283 AKKVWLKCGGYIVIERTEALTVIDVNTGKYVGVNNLEDTVLRTNLDAVKEIGKQLRLRDI 342 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDM + ++ + V + LK+ LKKDR + V ++ GL+EM+R+++R + Sbjct: 343 GGIIIIDFIDMHDPEHQKQVLEALKQVLKKDRTKTTVVGMTGLGLIEMTRKKVREGLESM 402 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C YC+G G I S SVA ++ + + +Y + A+ I+V H V L + + Sbjct: 403 MLQDCPYCEGRGKILSPESVARNVEKEISKYFTKTIANAIMVEVHPTVAEVLRGEDNDNL 462 Query: 540 VEYEARFGVSINVVIGIELADKL 562 + F + + E+ + Sbjct: 463 ARIQNLFNKKVIIKPSAEVGHEE 485 >gi|325524247|gb|EGD02371.1| ribonuclease G [Burkholderia sp. TJI49] Length = 489 Score = 264 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 199/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPPSAAAHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVAYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D + I V + Y+ DF P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLADFAAEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|206560754|ref|YP_002231519.1| ribonuclease G [Burkholderia cenocepacia J2315] gi|198036796|emb|CAR52696.1| ribonuclease G [Burkholderia cenocepacia J2315] Length = 489 Score = 264 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 200/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPPDEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D + I V + Y +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETYTRLAEFAGEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|156975915|ref|YP_001446822.1| ribonuclease G [Vibrio harveyi ATCC BAA-1116] gi|156527509|gb|ABU72595.1| hypothetical protein VIBHAR_03681 [Vibrio harveyi ATCC BAA-1116] Length = 489 Score = 264 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 202/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNHYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I+V Y K+F +P Sbjct: 194 QKVMERRAKYKTRSTLYGELGLAQRILRDFVGTELDKIMVDSRLEYENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMLSDEHRKRVLTSLEAALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCEGRGSVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A N +V+ V LL + + E E G + + + F + Sbjct: 434 AYDADNFVVYASPYVAETLLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|260773638|ref|ZP_05882554.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio metschnikovii CIP 69.14] gi|260612777|gb|EEX37980.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio metschnikovii CIP 69.14] Length = 489 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 118/413 (28%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFKVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVYMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 R +N + G G I+RTA + E+ +D +L RLW Sbjct: 136 AIHVGVSQRI--ESERERNRLKSVVGQYCDEHGGFIIRTAAEGANEKELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E +Y E L +R +RD ++++I+V + +F +P Sbjct: 194 TKIMERRAKYKTRTTLYGELGLAQRILRDFVGTELTKILVDSRTEFDNLLEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLSLYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMISDDHRKRVLVSLEAALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + ++ E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVADTLQGDESHSLAELEVFIGKQVRIQAEPLYVQEQFDV 486 >gi|53718794|ref|YP_107780.1| ribonuclease G [Burkholderia pseudomallei K96243] gi|76811448|ref|YP_332787.1| ribonuclease G [Burkholderia pseudomallei 1710b] gi|126440628|ref|YP_001058273.1| ribonuclease [Burkholderia pseudomallei 668] gi|126451783|ref|YP_001065512.1| ribonuclease [Burkholderia pseudomallei 1106a] gi|134281107|ref|ZP_01767816.1| TerL protein [Burkholderia pseudomallei 305] gi|167718773|ref|ZP_02402009.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei DM98] gi|167737785|ref|ZP_02410559.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 14] gi|167814968|ref|ZP_02446648.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 91] gi|167823383|ref|ZP_02454854.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 9] gi|167844933|ref|ZP_02470441.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei B7210] gi|167893476|ref|ZP_02480878.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 7894] gi|167901929|ref|ZP_02489134.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei NCTC 13177] gi|167910162|ref|ZP_02497253.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei 112] gi|167918194|ref|ZP_02505285.1| ribonuclease, Rne/Rng family protein [Burkholderia pseudomallei BCC215] gi|217419451|ref|ZP_03450957.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 576] gi|226195309|ref|ZP_03790898.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pakistan 9] gi|237811520|ref|YP_002895971.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei MSHR346] gi|242317134|ref|ZP_04816150.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1106b] gi|254181244|ref|ZP_04887841.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1655] gi|254190607|ref|ZP_04897114.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pasteur 52237] gi|254195163|ref|ZP_04901592.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei S13] gi|254258934|ref|ZP_04949988.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1710a] gi|254298476|ref|ZP_04965928.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 406e] gi|52209208|emb|CAH35153.1| ribonuclease G [Burkholderia pseudomallei K96243] gi|76580901|gb|ABA50376.1| ribonuclease G [Burkholderia pseudomallei 1710b] gi|126220121|gb|ABN83627.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 668] gi|126225425|gb|ABN88965.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1106a] gi|134247413|gb|EBA47498.1| TerL protein [Burkholderia pseudomallei 305] gi|157808115|gb|EDO85285.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 406e] gi|157938282|gb|EDO93952.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pasteur 52237] gi|169651911|gb|EDS84604.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei S13] gi|184211782|gb|EDU08825.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1655] gi|217396755|gb|EEC36771.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 576] gi|225932511|gb|EEH28509.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei Pakistan 9] gi|237502901|gb|ACQ95219.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei MSHR346] gi|242140373|gb|EES26775.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1106b] gi|254217623|gb|EET07007.1| ribonuclease, Rne/Rng family [Burkholderia pseudomallei 1710a] Length = 488 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 116/399 (29%), Positives = 197/399 (49%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 87 HQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEA 146 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + G I+RT T E+ D YL + W + Sbjct: 147 EREAVRARLTAVIPSDEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTS 206 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++ +L +R +RD D + I V + ++ +F P+ + + Y P+F Sbjct: 207 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVEFAAEFTPAVSPKLHHYTGERPLF 266 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEA Sbjct: 267 DLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 326 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+E Sbjct: 327 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVE 386 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C C+G G +++ +V ILR + Q+ V Sbjct: 387 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQ 446 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L+++ + G +++ + L+ + + I Sbjct: 447 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GN+YL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|237807033|ref|YP_002891473.1| ribonuclease G [Tolumonas auensis DSM 9187] gi|237499294|gb|ACQ91887.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187] Length = 489 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 206/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVDVKEKEHFQAGNIAELVRQGQDIMVQVVKDPMGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ R + + + + V G I+RTA + E+++D +L RLW Sbjct: 136 SAHVGVSQRI--DSEEERERLKEIVSRNVDELGGFIIRTAAEGIGEKELEQDTIFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E H++Y E +L R +RD D+ +I V + Y + F + +P Sbjct: 194 RKVLERRQKYPTSHVLYAEWSLAFRILRDFVGDDLDKIRVDSRQTYEQLSHFTEEFVPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 IGKLDYYSGESPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA IARQLRLR+L G+I++DFIDM+ + + R V + L+++L KDRA Sbjct: 314 RNLEETIFNTNIEATAAIARQLRLRNLGGIIIIDFIDMQSEDHRRRVLQSLEQALAKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C CKG G +++ SV ILR + Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESLEHVLCSECPACKGRGRVKTVESVCYEILREILRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ ++ E E + V + + + Sbjct: 434 AYDADQFVVYASPAVAEALRGEESHSLAELEVFISKQVKVQAEPLYNQEQYDV 486 >gi|296134025|ref|YP_003641272.1| ribonuclease, Rne/Rng family [Thermincola sp. JR] gi|296032603|gb|ADG83371.1| ribonuclease, Rne/Rng family [Thermincola potens JR] Length = 564 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 132/434 (30%), Positives = 224/434 (51%), Gaps = 3/434 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 K I +V+K Q +LVQI KE G KGA VTT+++L GRY VLMP Sbjct: 82 EEAKSNYHVNITDVLKEGQEILVQIAKEPIGTKGARVTTHITLPGRYLVLMPTVDYIGIS 141 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + PA MG+I+RT + E+ +D L +LW ++ + Sbjct: 142 RRIENESERER--LKALAEKVKPANMGLIVRTIAEGMDEEELVQDVTVLTKLWKKIQNRS 199 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 + P+L++++ L++R +RD++ +DI +I+ Y + + M+L P V Y Sbjct: 200 CHGPVPNLIHKDLELVQRILRDIFTEDIDNLIIDSRYEYEKVLELMELTTPQLKSRVSLY 259 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 E +F + G++ +++ + + V L GY++I+QTEAL +IDVN+G+ + DT Sbjct: 260 EQD-NLFEKFGVDEEIEKILKPRVWLKCGGYIVIDQTEALTAIDVNTGKYVGSTNLADTV 318 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNL+AA EIARQLRLR++ G+I+VDFIDM ++++ R V +KL+E ++KD+ + V + Sbjct: 319 LKTNLDAAVEIARQLRLRNIGGIIIVDFIDMPDQEHQRMVLQKLEEEVRKDKTKTNVLGL 378 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 + GL+EM+R+++R + K C YC G G + S+ ++++ + + +A I Sbjct: 379 TQLGLVEMTRKKVRQGLENVLLKPCPYCDGRGKVLSEETISIRAKNEIFKLAQHTSAEAI 438 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 +V H V L+ + E EA+ SI + ++ I + G Sbjct: 439 LVEVHPSVASLLIGSGGTQLRELEAKTKKSILIRGCEHYHQEVINIRALYSQSEIEAIGV 498 Query: 580 KVGSDSQAPSYDKN 593 V + Sbjct: 499 PVRPGQILEVRIEE 512 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ EETRV VL D V E+ E +++ GNIY KV V P +QAAFVD Sbjct: 1 MLKEILVNVRE-EETRVAVLEDKVVVEIYIERSLNQRLVGNIYKGKVENVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL + P Sbjct: 60 IGLEKNAFLFVEDAVP 75 >gi|116749264|ref|YP_845951.1| ribonuclease [Syntrophobacter fumaroxidans MPOB] gi|116698328|gb|ABK17516.1| RNAse E [Syntrophobacter fumaroxidans MPOB] Length = 495 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 174/424 (41%), Positives = 265/424 (62%), Gaps = 2/424 (0%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 PE + + IQ+VI + Q +LVQ+VKEE G+KGA +TTY+SLAGR VLMP Sbjct: 73 EIHPEYYEEDSDERVRIQDVIHSGQEVLVQVVKEELGSKGALLTTYISLAGRDVVLMPGQ 132 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S+ +SRKI + R+ LKE+A L+VP GVILRTA RTK E+ +DF +LM++W+ Sbjct: 133 SQRG-VSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRTKREVTKDFNHLMKIWE 191 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +R+ + AP L+Y+E +L R IRD + +I I+V + ++ KDF++++ P + Sbjct: 192 EIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREVLKQVKDFIRIISPRHD 251 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR-STRE 392 R+VR Y++ PI + +E Q+ + + +V L S G+++I+ TEALV++DVNSGR ++ E Sbjct: 252 RVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTEALVAVDVNSGRTNSGE 311 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+ + N+EAA EI RQLRLRDL GLIV+DFIDM + ++ R VE++LKE +KKD+A Sbjct: 312 GALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHTREVERRLKEEIKKDKA 371 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 ++ VG IS FGLLE+SRQ + +++ + K C C+GAG +RS + AL LR + L Sbjct: 372 KITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSAETTALCYLRKIWLTLS 431 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 Q ++ +V YLLN+KR + E R+G +I + + ++E + Sbjct: 432 QKKPASVRATFAPEVAHYLLNRKRQELTRLEERYGTNIQIESLATMLPHDGHLEFTARET 491 Query: 573 ALVN 576 Sbjct: 492 QEKP 495 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 40/79 (50%), Positives = 54/79 (68%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ M+I+A H EE RV ++ +E E+ + ++ GNIY VT V+PSLQAAFV+ Sbjct: 1 MSQTMIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVN 60 Query: 61 YGGNRHGFLPFLEIHPDYY 79 YG R+GFLPF EIHP+YY Sbjct: 61 YGMERNGFLPFPEIHPEYY 79 >gi|167569362|ref|ZP_02362236.1| ribonuclease, Rne/Rng family protein [Burkholderia oklahomensis C6786] Length = 487 Score = 263 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 119/399 (29%), Positives = 199/399 (49%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 Q I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 86 QQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESET 145 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + G I+RT T E+ D YL + W + A Sbjct: 146 EREAVRARLTAVIPADEKGGYIVRTIAEDATGDELAADVAYLRKTWATIVAQGQRLPATS 205 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++ +L +R +RD D + I V + Y+ DF P+ + + Y P+F Sbjct: 206 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLVDFAGEFTPAVSPKLHHYTGERPLF 265 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEA Sbjct: 266 DLYSIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 325 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+E Sbjct: 326 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNGFSQLGLVE 385 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C C+G G +++ +V +LR + Q+ V Sbjct: 386 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDVLREILRESRQFNPREFRVIASQQ 445 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L+++ + G +++ + L+ + + I Sbjct: 446 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 484 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|167580361|ref|ZP_02373235.1| ribonuclease, Rne/Rng family protein [Burkholderia thailandensis TXDOH] Length = 488 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 117/399 (29%), Positives = 197/399 (49%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 87 HQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEA 146 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + G I+RT T E+ D YL + W + Sbjct: 147 EREAVRARLTAVIPADEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTS 206 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++ +L +R +RD D + I V + ++ DF P+ + + Y P+F Sbjct: 207 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLF 266 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEA Sbjct: 267 DLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 326 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+E Sbjct: 327 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVE 386 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C C+G G +++ +V ILR + Q+ V Sbjct: 387 MTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQ 446 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L+++ + G +++ + L+ + + I Sbjct: 447 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|167562111|ref|ZP_02355027.1| ribonuclease, Rne/Rng family protein [Burkholderia oklahomensis EO147] Length = 487 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 119/399 (29%), Positives = 199/399 (49%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 Q I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 86 QQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESET 145 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + G I+RT T E+ D YL + W + A Sbjct: 146 EREAVRARLTAVIPADEKGGYIVRTIAEDATGDELAADVAYLRKTWATIVAQGQRLPATS 205 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++ +L +R +RD D + I V + Y+ DF P+ + + Y P+F Sbjct: 206 LLYQDLDLAQRVLRDFANDDTTRIQVDSRETYQRLVDFAGEFTPAVSPKLHHYTGERPLF 265 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEA Sbjct: 266 DLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 325 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+E Sbjct: 326 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNGFSQLGLVE 385 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C C+G G +++ +V +LR + Q+ V Sbjct: 386 MTRKRTRESLAHVLCEPCPTCQGKGQVKTPRTVCYDVLREILRESRQFNPREFRVIASQQ 445 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L+++ + G +++ + L+ + + I Sbjct: 446 VIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 484 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|167585909|ref|ZP_02378297.1| ribonuclease, Rne/Rng family protein [Burkholderia ubonensis Bu] Length = 489 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 199/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPHTSAPHQPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT T E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVIPADEKGGYIVRTIAEDATSDELAGDVTYLRKTWATIVGQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD D S I V + Y+ +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDDTSRIQVDSRETYQRLAEFATEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALARDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 >gi|121609576|ref|YP_997383.1| ribonuclease [Verminephrobacter eiseniae EF01-2] gi|121554216|gb|ABM58365.1| RNAse G [Verminephrobacter eiseniae EF01-2] Length = 495 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 126/406 (31%), Positives = 208/406 (51%), Gaps = 2/406 (0%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 +K + Q I++ + + Q L+VQ++KE G KGA ++T +S+AGR V P + Sbjct: 87 RKGQPQVPIEKQVFDGQALMVQVIKEPIGTKGARLSTQISIAGRLLVFQPQDDHVGVSQK 146 Query: 222 KI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R L+ + G G ILRT G + E+ D YL + W ++E A Sbjct: 147 IPGAERDALRARLQALVGDKTTGGGGGFILRTNGEDSSDAELAEDIAYLRKTWALIKEAA 206 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L A L++++ L++R +RDL + I + + ++ F + MP+ A ++ Y Sbjct: 207 LKLPARSLLHQDLFLLQRVLRDLVGEQTQSIRIDSLEQFQRLHAFGQEFMPAAAGKLQHY 266 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + PIF I+ ++ V L S GY+I++QTEAL +IDVN+G +DT Sbjct: 267 KGERPIFDLYAIDEEVAKALGRRVDLKSGGYLIVDQTEALTTIDVNTGGFVGVRNFDDTI 326 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA+ IARQLRLR+L G+I+VDFIDM + + +V + ++ L +DR + G Sbjct: 327 FKTNLEAAQAIARQLRLRNLGGIIIVDFIDMAQGGHQEAVLTEFRKQLARDRVKTMAGGF 386 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ SV ILR + Q+ Sbjct: 387 SQLGLVEMTRKRTRESLAHMLCEPCAACQGKGSVKTARSVCYDILREILREARQFNPREF 446 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V + V+ LL+++ + G I++ + + + I Sbjct: 447 RVVASARVIEQLLDEESQHLAGLIDFIGKPISLQAESAMGQEQYDI 492 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 4/80 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ V+EL E ++ + GNIYL KV RV P +Q+AF+D Sbjct: 1 MQQDILINWS-PQETRVAVVEHGAVQELHIERTLERGLVGNIYLGKVARVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI---HPD 77 G R FL ++ PD Sbjct: 60 IGLERAAFLHVADLWQRQPD 79 >gi|297537833|ref|YP_003673602.1| Rne/Rng family ribonuclease [Methylotenera sp. 301] gi|297257180|gb|ADI29025.1| ribonuclease, Rne/Rng family [Methylotenera sp. 301] Length = 483 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 122/407 (29%), Positives = 207/407 (50%) Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 + Q IQ V+ Q ++VQ++KE G KGA +TT +S+AGR+ V +P Sbjct: 74 FECGQSDSQLPIQAVLHEGQSIMVQVIKEPIGTKGARLTTQISIAGRFLVYLPQQDHIGV 133 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 R + + L G I+RT + T E+ D +YL + W ++ Sbjct: 134 SQRIENEAEREQLRARLVGLLPEDRVGGYIIRTMSETATDAELLADVDYLTKTWAHISAK 193 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 + LV+++ NL R +RD+ C D + + + Y++ +F L + + Sbjct: 194 HKTASDRSLVFQDLNLPMRVLRDVICADTQAVRIDSSETYQKLVEFANLYAITALDKLVH 253 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y P+F IE +++ +V L S GY+I +QTEAL ++DVN+G + DT Sbjct: 254 YSGERPLFDLYSIEKEIEHAMSRKVELKSGGYLIFDQTEALTTVDVNTGSFVSGKNLSDT 313 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEAA+ IARQLRLR+L G+I++DFIDM+E +V +L++++ DR+R V Sbjct: 314 IFKTNLEAAQCIARQLRLRNLGGIIIIDFIDMDEDTQRAAVLGELQKAVALDRSRTGVNG 373 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 + GL+EM+R+R R S+ + C+ C+G G +++ +V ILR + Q+ A Sbjct: 374 FTPLGLVEMTRKRTRESLAHILCEPCSACQGRGELKTAQTVCYEILRELLREARQFNARE 433 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V V+ LL+++ ++ G I++++ + F I Sbjct: 434 LRVLAAPKVIDMLLDEESQSLANLSDFIGKPISLLVEPSCNQESFDI 480 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 6/87 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +ETR+ ++ + V+EL E + GN+Y V RV P +Q+AFV+ Sbjct: 1 MSEEILINVT-PQETRIAMMENGVVQELQIERSTSLGLVGNVYRGVVCRVLPGMQSAFVE 59 Query: 61 YGGNRHGFLPFLEI----HPDYYQIPF 83 G R FL +I D Q+P Sbjct: 60 IGLQRAAFLHAGDIFECGQSD-SQLPI 85 >gi|149910584|ref|ZP_01899222.1| ribonuclease G [Moritella sp. PE36] gi|149806312|gb|EDM66287.1| ribonuclease G [Moritella sp. PE36] Length = 491 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 136/484 (28%), Positives = 227/484 (46%), Gaps = 8/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A ++ + + A Sbjct: 13 PSETRVALIENGILQEIHVEREAKRGIVGNIYKGKVSRVLPGMQAAFIDIGLDKAAFLHA 72 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V G K + I ++++ Q + VQ+VK+ G KGA +TT ++ Sbjct: 73 SDIVPHTECVAAGEK------KHFKVADISQLVRQGQDITVQVVKDPMGTKGARLTTDIT 126 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP +S R + + ++ + +V G I+RTA EI Sbjct: 127 LPSRYLVFMPGSSHVGVSQR--IDCEEERSRLKAITEAQVDELGGYIIRTAADGVRDKEI 184 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D YL RLW V + ++ + ++Y++ +L R IRD + +I V Y E Sbjct: 185 EQDIAYLKRLWTKVLQRQRSNPSASMLYQDPSLAFRIIRDFVGSPLDKIRVDSRLAYTEL 244 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +F + +P + Y PIF +E + + +VTL S GY+II+QTEA+ + Sbjct: 245 CEFTESYVPELVSALELYTGERPIFEMYDVENESQRALERKVTLKSGGYLIIDQTEAMTT 304 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G +EDT TN+E+ + IARQLRLR+L G+I++DFIDM+ ++ R V + Sbjct: 305 IDINTGAFVGHRNLEDTIFNTNVESTQAIARQLRLRNLGGIIIIDFIDMQSSEHRRRVME 364 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +L DRA+ S GL+EM+R+R R S+ C C G G +++ +V Sbjct: 365 CLEAALSHDRAKTNTHDFSALGLVEMTRKRTRESLEHVLCSDCPTCDGRGSVKTVETVCY 424 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 I R V Y A V+ V Y+ ++ +I E E G + + + Sbjct: 425 EIFREVTRVNRAYDADQFNVYASVAVAEYIEKEESHSIAELELFMGKQVKIKPEPLYLQE 484 Query: 562 LFYI 565 F + Sbjct: 485 QFDV 488 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++L++ + ETRV ++ + ++E+ E E K+ I GNIY KV+RV P +QAAF+D Sbjct: 4 TTELLVNVT-PSETRVALIENGILQEIHVEREAKRGIVGNIYKGKVSRVLPGMQAAFIDI 62 Query: 62 GGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 63 GLDKAAFLHASDIVP 77 >gi|294673426|ref|YP_003574042.1| ribonuclease, Rne/Rng family [Prevotella ruminicola 23] gi|294472505|gb|ADE81894.1| ribonuclease, Rne/Rng family [Prevotella ruminicola 23] Length = 524 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 130/571 (22%), Positives = 236/571 (41%), Gaps = 72/571 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID ++ + +L D ++ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVIIDV-QPKDISIALLEDKQLVEYQQEQRTASFSVGNIYVAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 G R FL +L++ Y + SDR+ L + G + Sbjct: 60 VGAERVAFLHYLDLGTQFNSYEKYLKQVVSDRKKLYPIQKAH-----IQPELKKDGSIAN 114 Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 E + I T+ + F +Y + Sbjct: 115 TLKVGQEILVQIVKEPINTKGPRLTCE--------------------LSFAGRYLVLIPF 154 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ + +I K E ++ + + I R + L Sbjct: 155 EDGVSVSTKIKKGEERSRLKQLIQSIKPKNF-----------GVIVRTVAEGKRAAELDA 203 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L I + + R P L +EE + Sbjct: 204 ELKILLKRWE--------------DVISKVQKTTER--------------PQLCFEEESR 235 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 +RDL+ I V+ Y E K+++ L+ P IV+ Y PIF + Q Sbjct: 236 AVALLRDLFNPTYDGIHVNDSGIYDEIKNYLGLIAPEKKDIVKLYNGTVPIFDNFDVTKQ 295 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQ 413 L S V Y+II TEA+ +DVNSG ++ ++ AL+TNL AA+E+ARQ Sbjct: 296 LKSGFGKTVNYKHGAYLIIEHTEAMHVVDVNSGTRIKKENNQEANALETNLGAADELARQ 355 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLRD+ G+I+VDFIDM+ ++ + + +++ ++++KDRA+ + +S FGL++++RQR+R Sbjct: 356 LRLRDMGGIIIVDFIDMKLPEDRQLLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVR 415 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 ++ + + C C G G I+S ++ ++ + + +H H V Y+ Sbjct: 416 PAMNVNVEETCPTCFGKGTIKSSILFTDTLESKIDTLVNKIGMRKFYLHVHPYVAAYINQ 475 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFY 564 + ++++ ++G+ + V+ +LA + Sbjct: 476 GLFSLKMKWQMKYGLGVRVIPSQKLAFLQYE 506 >gi|332879537|ref|ZP_08447232.1| S1 RNA binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682503|gb|EGJ55405.1| S1 RNA binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 525 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 127/571 (22%), Positives = 226/571 (39%), Gaps = 72/571 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D R+ E E + GNIYLAKV ++ P L A FV+ Sbjct: 1 MTSEVIVDV-QPKEISIALLEDKRLVEFQKEGRSASFVVGNIYLAKVRKLMPGLNACFVN 59 Query: 61 YGGNRHGFLPFLEIHP------DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 G R FL +L++ P Y + SD++ L S + D G V Sbjct: 60 VGYERDAFLHYLDLGPKFNSYTKYLKQVTSDKKKLYPFSKA-----SILPDLEKDGSVQT 114 Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 E + I T+ + F ++ + Sbjct: 115 TLQQGQEILVQIVKEPISTKGPRLTCE--------------------LSFPGRFLVLMPF 154 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 +++ + +I E + + + I R + L Sbjct: 155 QDKVSVSSKIKSAEERARLKQLIQSIKPKNF-----------GVIVRTVAEGKRVAELDS 203 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L I ++ ++ + N ++ + ++ Sbjct: 204 ELKVLVKRCEDAFI-----KAQKASKLPELVFEETSRTVAMLRDLFNPSYENIYINDTDI 258 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 KD++ L+ P A IV+QY PIF + Q Sbjct: 259 FSEV-----------------------KDYVTLIAPESAGIVKQYTGKLPIFDNFDVTKQ 295 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQ 413 + S V+ Y+II TEAL +DVNSG ++ ++ AL NL AA+E+ARQ Sbjct: 296 IKSSFGKTVSYKHGAYLIIEHTEALHVVDVNSGNRSKSKDGQEANALDVNLGAADELARQ 355 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLRD+ G+IVVDFIDM ++ + + +++ E++KKDRAR + +S FGL++++RQR+R Sbjct: 356 LRLRDMGGIIVVDFIDMNLAEDRQKLYERMCENMKKDRARHNILPLSKFGLMQITRQRVR 415 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 + + +VC C G G ++S + + + N +H H V Y+ Sbjct: 416 PVMDVNVDEVCPTCFGKGTVKSSFLFTDVLESKISTMANKLGIKNFTLHVHPYVAAYINQ 475 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFY 564 + +++ ++G + V+ +L + Sbjct: 476 GIVSLKRKWQVKYGFGLKVIPSQKLGFLQYE 506 >gi|167618465|ref|ZP_02387096.1| ribonuclease G [Burkholderia thailandensis Bt4] gi|257139750|ref|ZP_05588012.1| ribonuclease G [Burkholderia thailandensis E264] Length = 488 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 117/396 (29%), Positives = 197/396 (49%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 90 IEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAERE 149 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + G I+RT T E+ D YL + W + L+Y Sbjct: 150 AVRARLTAVIPADEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTSLLY 209 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ +L +R +RD D + I V + ++ DF P+ + + Y P+F Sbjct: 210 QDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLFDLY 269 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA Sbjct: 270 NIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHT 329 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+EM+R Sbjct: 330 IARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVEMTR 389 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ + C C+G G +++ +V ILR + Q+ V V+ Sbjct: 390 KRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQVID 449 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L+++ + G +++ + L+ + + I Sbjct: 450 LFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|167835990|ref|ZP_02462873.1| ribonuclease G [Burkholderia thailandensis MSMB43] Length = 488 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 116/396 (29%), Positives = 198/396 (50%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 90 IEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAERE 149 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + G I+RT + E+ D YL + W + L+Y Sbjct: 150 AVRARLTAVIPADEKGGYIVRTIAEDASSDELAGDVAYLRKTWATIVGQGQRLPPTSLLY 209 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ +L +R +RD D + I V + ++ DF P+ + + Y P+F Sbjct: 210 QDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLFDLY 269 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA Sbjct: 270 NIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHT 329 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V + S GL+EM+R Sbjct: 330 IARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALARDRTRVTVNSFSQLGLVEMTR 389 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ + C C+G G +++ +V ILR + Q+ V V+ Sbjct: 390 KRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIGSQQVID 449 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L+++ + G +++ + L+ + + I Sbjct: 450 LFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 485 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|225154883|ref|ZP_03723381.1| ribonuclease, Rne/Rng family [Opitutaceae bacterium TAV2] gi|224804413|gb|EEG22638.1| ribonuclease, Rne/Rng family [Opitutaceae bacterium TAV2] Length = 594 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 122/577 (21%), Positives = 241/577 (41%), Gaps = 72/577 (12%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 + LI S E RV +L D +++ + E + ++ G IY ++ ++P L+AAFVD G Sbjct: 81 RELIINSEPLEKRVALLIDGVLDKFEIERANADRMVGGIYKGRIKNLDPGLKAAFVDIGY 140 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 +++ FL + ++ P + E V + G P + +++++ Sbjct: 141 SKNAFLHYWDMLP-----------------AATDSSIEVVRVNKKKGAAPRPAEPTVKDI 183 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + + V+ G +Y + ++ + + Sbjct: 184 PTLYPPGSDIVIQ---------VTKGPIGTKGPRTTTNLSLPGRYLVLMPFSDQCGISRK 234 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 I + ++ + L++ I R + L Sbjct: 235 IEDNKERHRLKQLVNELTIP----------EGMGVIVRTAGEGKKARYFVRDLHLLLKTW 284 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 I R R+ + ++ + + R + Sbjct: 285 AE--IQRKMQDVRSPACLYQEPDIVERTVRDFL--------------------------- 315 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +++ +++ + + + + + + Y+D PIF R IE Q++ Q +V Sbjct: 316 TEEVDRVLIDNTEDHARCQAAVAQISSRSKNKIALYKDNIPIFERFNIERQIEQTFQRKV 375 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 +LPS G +II++TEAL++IDVN+G ++ NLEAA EIARQ+RLR+L GL Sbjct: 376 SLPSGGEIIIDETEALIAIDVNTGSHKNKGGDEKNVIYSVNLEAAVEIARQIRLRNLGGL 435 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 I+ DFIDM+E+++ V +KL ES+ +DRA+ + IS G+L+M+RQR + S+ + Sbjct: 436 IICDFIDMKERRHRNGVYEKLCESMSQDRAKTHILPISQLGILQMTRQRQQESLTSNMYV 495 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQ------YTAHNIIVHTHSDVVLYLLNQKR 536 C YC+G G ++S +++++ + R + + + +++ V H ++ L ++ Sbjct: 496 DCPYCRGRGIVKSATTMSVELQRKLSSIVRRLIARNDGKTYSLRVLVHPGILDRLRSEDA 555 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 +V E +GV + + F I S + Sbjct: 556 ELLVRMEREYGVKLAFRADPSYHVENFKIINTSTGEE 592 >gi|146329834|ref|YP_001209405.1| ribonuclease g [Dichelobacter nodosus VCS1703A] gi|146233304|gb|ABQ14282.1| ribonuclease g [Dichelobacter nodosus VCS1703A] Length = 496 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 118/400 (29%), Positives = 213/400 (53%), Gaps = 1/400 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ I E++ + +LVQ++K+ G KGA +TT +S++ R+ V +P S +S KI + Sbjct: 95 KEQKISEILHEGESILVQVLKDPIGTKGARLTTEISISSRFLVFLP-KSHDIGVSIKIVS 153 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 R+NL+E+ G I+RTA + ++ D +YL R+WD++ S A Sbjct: 154 ETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAMRADMQYLHRVWDSILTTYRESYAS 213 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y + L +R +RD + ++IV + YR F + A + Y+ + Sbjct: 214 TLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAMAQFAGNFLIEMADRITLYDGDRTL 273 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F R G+E +++ + V L S GY++I+QTEA+ +IDVN+G + EDT +TNLE Sbjct: 274 FDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTTIDVNTGGFVGKSSQEDTIFKTNLE 333 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+ IARQLR+R+L G+I++DFIDM ++ +SV L +L D+++ + IS G++ Sbjct: 334 AAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVDALLNALAGDKSKYTISPISPLGII 393 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EM+R+R R S+ + + C C G GY+++ ++ + R + +Y + V + Sbjct: 394 EMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVYELFRDLMREAREYAPKGMTVIGNP 453 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 D + ++ ++ + + + I + + + I Sbjct: 454 DFIEFIREEESMAFSDLQILLKMPIRLQSDGAYSQDKYDI 493 >gi|237745555|ref|ZP_04576035.1| RNase G [Oxalobacter formigenes HOxBLS] gi|229376906|gb|EEO26997.1| RNase G [Oxalobacter formigenes HOxBLS] Length = 487 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 114/414 (27%), Positives = 205/414 (49%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I+ ++ + Q L+V+++K+ G KGA ++T +S+AGR V +P Sbjct: 71 DDILEAHQNDSSAGKPVPIERMLTDGQSLMVRVIKDPLGTKGARLSTQISIAGRLLVYLP 130 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 R + + L G I+RT ++ ++K D +L ++ Sbjct: 131 QEKHIGISQRIQDEKERELLKNRVQQFLTDEEKGGFIIRTMAEDASEDDLKTDAVFLQKI 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++++ A + AP L+Y++ L +R +RD ++ + I V + + + ++F P Sbjct: 191 WRSLKDKAYLASAPTLLYQDLTLPERILRDFVHENTARIRVDSHEEFLKLREFAATYTPD 250 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + YE P+F +E ++ V L S GY+II+QTEA+ +IDVN+G Sbjct: 251 ILERLSFYEGDRPLFDLYNVEEEIGLALSRRVNLKSGGYLIIDQTEAMTTIDVNTGGFVN 310 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +DT +TNLEAA IARQLRLR+L G+I++DFIDME ++ R+V +L+++L KDR Sbjct: 311 GRTFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMENAEHRRAVMDELRKTLAKDR 370 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 +V + S GL+EM+R+R R S+ + C C G G +++ +V I+R + Sbjct: 371 TKVSLSDFSALGLVEMTRKRTRESLAHILCEPCPVCHGQGQVKTAQTVCYEIMRDILREA 430 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Q++ + V+ L ++ + G I++ + + + Sbjct: 431 RQFSPKEFRILASQIVIDLFLEEESQHLASLGDLIGKPISLQVESAYTQTQYDV 484 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ + +ETR+ V+ + +EL E + + GN+YL +V RV P +Q+AF+D Sbjct: 1 MKEDILINVT-PQETRIAVVSEGSTQELHIERSQTRGLAGNVYLGRVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHIDDI 73 >gi|294637784|ref|ZP_06716058.1| ribonuclease G [Edwardsiella tarda ATCC 23685] gi|291089076|gb|EFE21637.1| ribonuclease G [Edwardsiella tarda ATCC 23685] Length = 489 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER--LKAIVAPHCDELGGFIIRTAAEGADDEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + ++Y E L +R +RD + I V Y +DF + MP Sbjct: 194 IKVMERKRRNQSKCMLYGELALAQRVLRDFAGASLDRIRVDSRLTYDLLQDFTQEYMPEI 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TPCLDLYSGKQPIFDMYDVENEIQRALERRVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDRA Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMNSEDHRRRVLHSLEQALSKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V +LR + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCGECPTCHGRGTVKTVETVCYEVLREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHALAEVELFVGKQVKVQIEPLYSQEQFDV 486 >gi|221134077|ref|ZP_03560382.1| ribonuclease G [Glaciecola sp. HTCC2999] Length = 488 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 123/414 (29%), Positives = 210/414 (50%), Gaps = 3/414 (0%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + +DV + I+E++++ Q ++VQ+VKE G KGA +TT +++ RY V MP Sbjct: 75 IHNEVVDDVNPNHITKKDIRELVRDGQDIVVQVVKEPIGTKGARLTTDITIPSRYLVFMP 134 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + + R + + G ILRTA + E++ D E+L RL Sbjct: 135 SVTHVGVSQRIEDADERER--LKDIVSKFCDENGGFILRTAAEGVNEHELEADAEFLKRL 192 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 WD ++ + + A ++++E+ L +R IRD +I +I + + + E +F + +P Sbjct: 193 WDIIQTR-MKTKANNVLFEDLPLARRVIRDFTGTEIEKIRIDSKLSFNELVEFTQEYVPE 251 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + Y+ PIF +E + + V L S GY+II+QTEA+ +ID+N+G Sbjct: 252 LHDKLEYYKGERPIFDLYDVENEAQRALKRRVDLKSGGYLIIDQTEAMTTIDINTGAFVG 311 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T TN+EA + IARQLRLR+L G+I++DFIDM E + R V + L + DR Sbjct: 312 HRNLEETIFNTNVEATQAIARQLRLRNLGGMILIDFIDMTEPDHQRRVLQSLTHACSFDR 371 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 A+ + + GL+EM+R+R R S+ + + C C+G G I++ ++ ++R + Sbjct: 372 AKTNIHGFTALGLIEMTRKRTRESLEHTLCEDCPVCEGRGSIKTIETICFEVMREIVRVN 431 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L+ ++ A + E E INV F + Sbjct: 432 RAYDADKFVVYASPAVAEALMGEESAMLAEVELFVAKQINVQTEHLYNQDKFDV 485 >gi|28899461|ref|NP_799066.1| ribonuclease G [Vibrio parahaemolyticus RIMD 2210633] gi|153839776|ref|ZP_01992443.1| ribonuclease G [Vibrio parahaemolyticus AQ3810] gi|260363371|ref|ZP_05776223.1| ribonuclease G [Vibrio parahaemolyticus K5030] gi|260879305|ref|ZP_05891660.1| ribonuclease G [Vibrio parahaemolyticus AN-5034] gi|260895736|ref|ZP_05904232.1| ribonuclease G [Vibrio parahaemolyticus Peru-466] gi|260900308|ref|ZP_05908703.1| ribonuclease G [Vibrio parahaemolyticus AQ4037] gi|28807697|dbj|BAC60950.1| cytoplasmic axial filament protein [Vibrio parahaemolyticus RIMD 2210633] gi|149746700|gb|EDM57688.1| ribonuclease G [Vibrio parahaemolyticus AQ3810] gi|308087443|gb|EFO37138.1| ribonuclease G [Vibrio parahaemolyticus Peru-466] gi|308093123|gb|EFO42818.1| ribonuclease G [Vibrio parahaemolyticus AN-5034] gi|308107525|gb|EFO45065.1| ribonuclease G [Vibrio parahaemolyticus AQ4037] gi|308111209|gb|EFO48749.1| ribonuclease G [Vibrio parahaemolyticus K5030] gi|328471402|gb|EGF42297.1| ribonuclease G [Vibrio parahaemolyticus 10329] Length = 489 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNHYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I+V Y K+F +P Sbjct: 194 LKVMERRSKYKTRSTLYGELGLAQRILRDFVGTELDKILVDSRLEYENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASEEHRQRVLTSLEAALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSGCPTCEGRGTVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A N +V+ V LL + + E E G + + + F + Sbjct: 434 AYDADNFVVYASPFVAEALLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|269140474|ref|YP_003297175.1| ribonuclease G [Edwardsiella tarda EIB202] gi|267986135|gb|ACY85964.1| ribonuclease G [Edwardsiella tarda EIB202] gi|304560266|gb|ADM42930.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Edwardsiella tarda FL6-60] Length = 489 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQR--IDSEAERERLKAIVAPHCDELGGFIIRTAAEGADDEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + ++Y E L +R +RD + I V Y +DF MP Sbjct: 194 IKVMERKRRNKTKCMLYGELALAQRVLRDFAGASLDRIRVDSRLTYDLLQDFTSEYMPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TPCLELYSGKQPIFDMYDVENEIQRALERRVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDRA Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSCEDHRRRVLHSLEQALSKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V ILR + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCGECPTCHGRGTVKTVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHALAEVELFVGKQVKVQIETLYSQEQFDV 486 >gi|163802909|ref|ZP_02196797.1| cytoplasmic axial filament protein [Vibrio sp. AND4] gi|159173316|gb|EDP58142.1| cytoplasmic axial filament protein [Vibrio sp. AND4] Length = 489 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + KK + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKKQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESESERER-LKKVVNRYCDEHG-GFIIRTAAEGADEKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +++V + K+F +P Sbjct: 194 QKVMERRAKYKTRSTLYGELGLAQRILRDFVGTELDKVMVDSRLEFEHLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMASEEHRKRVLVSLETALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSSCPTCVGRGSVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A N +V+ + V LL + + E E G + + + F + Sbjct: 434 AYDADNFVVYASASVAETLLGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|90580179|ref|ZP_01235986.1| putative ribonuclease G and E [Vibrio angustum S14] gi|90438481|gb|EAS63665.1| putative ribonuclease G and E [Vibrio angustum S14] Length = 489 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 119/413 (28%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + KK + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKKQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K + + + G I+RTA E+ +D +L LW Sbjct: 136 ASHVGVSQRIESEKERDRLKKAVLQHCDDL--GGFIIRTAAEGANTDEVAQDAAFLKHLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD +I I V + + + K+F +P Sbjct: 194 RKVLERRAKYKPRSMLYGELGLAQRILRDFVGTEIDNIKVDSRQAFDKLKEFTDEFVPEV 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ +V + S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDNIEYYSGQQPIFDLYDTESEIQRSLDRKVEMKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V + L+++L DR Sbjct: 314 RNLDETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMISEEHQQRVLQALEQALSYDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C G G +++ SV +LR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPSCDGRGTVKTVESVCYEVLREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A IV+ S V L+ + + E E G + + + F + Sbjct: 434 AYDADRFIVYVSSAVGEALMGDESHALAELEVFIGKQVKIKPEPLYNQEQFDV 486 >gi|165976227|ref|YP_001651820.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150138|ref|YP_001968663.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251192|ref|ZP_07337371.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252385|ref|ZP_07534282.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261291|ref|ZP_07542966.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263475|ref|ZP_07545090.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876328|gb|ABY69376.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915269|gb|ACE61521.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649926|gb|EFL80103.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860307|gb|EFM92323.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869022|gb|EFN00824.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871118|gb|EFN02847.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 491 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 137/485 (28%), Positives = 225/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPIGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW + E ++Y E L +R +RD IS I + + Y + Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLVEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ +V YL+N++ A+I E EA G I + + Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKKIEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 >gi|320353219|ref|YP_004194558.1| RNAse G [Desulfobulbus propionicus DSM 2032] gi|320121721|gb|ADW17267.1| RNAse G [Desulfobulbus propionicus DSM 2032] Length = 501 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 129/411 (31%), Positives = 227/411 (55%), Gaps = 2/411 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 P I +++ Q +LVQI KE G+KGA +T ++L R V MP T Sbjct: 89 KLRSIPPSHLPATPAINDILHEGQEILVQIAKEPIGSKGARLTCNITLPCRNLVFMPLTD 148 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 ISRKI + R+ L++ + P G G I+RT + ++ D E+L+ LWD Sbjct: 149 HIG-ISRKIEDEATRQQLRDRI-EVLRPPGTGFIMRTVAENIGNEALEADMEFLLLLWDE 206 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 + A + AP L+Y++ ++I R++RD + ++I+E+++ + Y + + K P Sbjct: 207 ILTKAQKAQAPCLIYKDLDIILRSVRDFFTEEINELVIDNAEVYEQLLSYAKTFAPQLQD 266 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y+ P+F R G+E ++S +V L S GY+II TEAL IDVN+GR Sbjct: 267 KITYYDSDLPLFERYGVEADINSALDKKVWLRSGGYIIIEPTEALTVIDVNTGRYVGASD 326 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 + +T +TN+EA EIARQLRLR+L G+I++DFIDME +++ + +E+++ D+++V Sbjct: 327 LAETIFKTNMEAVREIARQLRLRNLGGIIIIDFIDMENEQHREELYAAFQEAMRNDKSKV 386 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 + +S FGL++M+R+R+ S++++ + C YC G G+I+S+ ++ I R + + Sbjct: 387 NILKLSEFGLVQMTRKRLSESLIQTMCEPCLYCGGDGFIKSRRTICHEIFRKISRDARKI 446 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ + H + LLN++ TI + E R ++ ++ K + + Sbjct: 447 GGSHVTIKVHPHIAEMLLNEESYTIEQLEQRTEKRFTIIPVPDMHIKRYDV 497 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+A+ E R+ ++ + + E E +K + GNIYL +V RV P + AAFVD Sbjct: 1 MYTDILINATF-YENRIALVENGHLREFHLERVSEKGLIGNIYLGRVVRVLPGIDAAFVD 59 Query: 61 YGGNRHGFLPFLE---IHPDYYQ 80 G +R GFL E I + YQ Sbjct: 60 IGLDRTGFLYVDEAFYIFSENYQ 82 >gi|121534080|ref|ZP_01665905.1| ribonuclease, Rne/Rng family [Thermosinus carboxydivorans Nor1] gi|121307183|gb|EAX48100.1| ribonuclease, Rne/Rng family [Thermosinus carboxydivorans Nor1] Length = 473 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 137/390 (35%), Positives = 221/390 (56%), Gaps = 5/390 (1%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 Q +L+QIVK+ G+KG TT L L GRY+VL P S G +SR+I + +RK L+++A Sbjct: 83 GQDILIQIVKDASGSKGPRTTTGLMLPGRYAVLAP-YSDGTGVSRRIEDDAERKRLRQLA 141 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 ++ G+G+I+RTA A ++ E+ RD EYL LW + A S AP L+Y + +L Sbjct: 142 DKVKPD-GVGMIVRTAAAGCSETELARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAI 200 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R +RD D++E+++ Y D ++ L P+ V+ Y+ P IF GI L+ Sbjct: 201 RIVRDYLDDDVTEVVIDNRDAYGRVCDLLQHLAPAALAKVKFYQYPEDIFVHYGIAADLN 260 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 L + EV L G+++I+QTEAL IDVN+GR + + DT + N+EAA EIARQLRL Sbjct: 261 RLLKREVELACGGFLVIDQTEALTVIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRL 320 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RD+ G+I+VDFIDM + ++ ++V L E +++DR R ++ +++ GL+E++R++ R + Sbjct: 321 RDIGGIIIVDFIDMAKAEHKQAVLAFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDL 380 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQK 535 C C G G I+S +VA++I R + Q A +++ H VV L + Sbjct: 381 NSLMYSECPCCAGRGRIQSPETVAINIRRHLRWAAAQRKLASRLVIQAHPQVVEIL--SR 438 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYI 565 + + E + + + + + I Sbjct: 439 QGELARLERELARKLTLESAPAMHPECYSI 468 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + I + EE+R+ ++ D + E E + GNIY KV V P +QAAF+D Sbjct: 1 MGKTI-IASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFID 59 Query: 61 YGGNRHGFLPF 71 GG+++ +L Sbjct: 60 IGGDKNAYLYV 70 >gi|312796939|ref|YP_004029861.1| ribonuclease G [Burkholderia rhizoxinica HKI 454] gi|312168714|emb|CBW75717.1| Ribonuclease G (EC 3.1.4.-) [Burkholderia rhizoxinica HKI 454] Length = 489 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 121/399 (30%), Positives = 199/399 (49%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 Q I++++ Q L+VQ+VK+ G KGA ++T +S+AGR V +P + + Sbjct: 88 QQPIEKIVFEGQTLMVQVVKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEV 147 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + L V G I+RT + + D YL + W ++ A Sbjct: 148 EREAVRARLTSVLPVDERGGYIVRTIAEDASSEALSNDVAYLRKTWATIQAQATRMPPTT 207 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++ NL +R +RD D + I V + + +F P+ A + Y P+F Sbjct: 208 LLYQDLNLAQRVLRDFVNDDTTRIQVDSRETSQMLVEFANEFTPAVASKLHHYTGERPLF 267 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEA Sbjct: 268 DLYNIEAEILRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEA 327 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+E Sbjct: 328 AHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLGELKKALSRDRTRVTVNGFSQLGLVE 387 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ ++C C+G G +++ +V ILR + Q+ V Sbjct: 388 MTRKRTRESLAHVLCELCPVCQGKGQVKTARTVCYDILREILRESRQFNPREFRVVAAQQ 447 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L ++ + G +++ + L+ + + I Sbjct: 448 VIDLFLEEESQHLAMLCDFIGKPVSLQVESNLSQEQYDI 486 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AFVD Sbjct: 1 MNEEILINVT-PQETRVAIVQQGAVQELHIERTLSRGRVGNIYLGKVVRVLPGMQSAFVD 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 60 IGLERAAFLHVADIWHP 76 >gi|312131598|ref|YP_003998938.1| ribonuclease, rne/rng family [Leadbetterella byssophila DSM 17132] gi|311908144|gb|ADQ18585.1| ribonuclease, Rne/Rng family [Leadbetterella byssophila DSM 17132] Length = 520 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 152/563 (26%), Positives = 260/563 (46%), Gaps = 61/563 (10%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +N++ I A+ + R+ ++R+ R+ E + G+IY V +V A Sbjct: 4 SNELYISATSKGD-RIALVRNKRLIEYHVDETEHHFAVGDIYFGSVKKVVSGNNA----- 57 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 F++I E Sbjct: 58 --------AFIDIG--------------------------------------------HE 65 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + A + S+I D+++ + + ++Q I +V+ +L Sbjct: 66 KDAFLHYHDLSPNILSLIKFTKDIIAKRPVSPRLKGFKLEAQIEKQGKISDVLSKNMPIL 125 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 Q+VKE +KG ++ +S+AGRY VL+P S IS+KIT+ +R+ L ++ ++ Sbjct: 126 AQVVKEPISSKGPRLSCDISIAGRYIVLVPF-SNSINISKKITSKQERQRLHKLMSSVKP 184 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 GVI+RT + +++RD E+ + W+ + ++ V E + +RD Sbjct: 185 E-NFGVIVRTVAENMDVEDLQRDLEHCLEKWELGVKALRTAMPRDRVISEMDRAASILRD 243 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 + D I+V ++ Y + K+ + + P +I++ ++ IF GIE QL SL Sbjct: 244 MLNDDFDSIVVDTKESYDKIKNLLHAIAPQKEKILKLHQGKAKIFEHYGIEKQLKSLFGR 303 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 VTLP GY++I TEAL IDVNSG +++ E E TAL N EAA EIARQLRLRD+ Sbjct: 304 TVTLPGGGYLVIEHTEALHVIDVNSGNKASSEPNQEATALNVNKEAAIEIARQLRLRDMG 363 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G++V+DFIDM++ +N + V L+E +K DR++ + IS FGL +++RQR+R + T Sbjct: 364 GIVVIDFIDMKKAENKKEVHDVLREEMKGDRSKYTILPISKFGLSQITRQRVRPEISVDT 423 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G G I++ SV I +E LL+ + + H V Y + + Sbjct: 424 RETCPTCGGTGSIQASISVTDQIENHLEHLLLKQNEAKVSIMVHPFVYAYYKEGFISRQM 483 Query: 541 EYEARFGVSINVVIGIELADKLF 563 ++ ++ IN++ L + Sbjct: 484 KWFFKYKKWINLIKDSTLGLMEY 506 >gi|153830408|ref|ZP_01983075.1| ribonuclease G [Vibrio cholerae 623-39] gi|148874110|gb|EDL72245.1| ribonuclease G [Vibrio cholerae 623-39] Length = 474 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 119/413 (28%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 61 HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 120 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA + E+ +D +L RLW Sbjct: 121 ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 178 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD ++++I++ + + K+F +P Sbjct: 179 SKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 238 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 239 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 298 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 299 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRV 358 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 359 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 418 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ + E E G + + + F + Sbjct: 419 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 471 >gi|253996000|ref|YP_003048064.1| Rne/Rng family ribonuclease [Methylotenera mobilis JLW8] gi|253982679|gb|ACT47537.1| ribonuclease, Rne/Rng family [Methylotenera mobilis JLW8] Length = 483 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 124/399 (31%), Positives = 211/399 (52%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 + IQEV+ Q ++VQ++KE G KGA +TT++S+AGR+ V +P R Sbjct: 82 KRPIQEVLHEGQSVMVQVIKEPIGTKGARLTTHISIAGRFLVYLPQQEHIGVSQRIEIEA 141 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + L G I+RT + T E+ D +YL + W ++++ ++ Sbjct: 142 ERESLKARLLGLLPADRVGGYIIRTMSEAATDEELLADIDYLNKTWKHIKDKSITVPERT 201 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L++++ NL R +RD+ C D + V + Y+ DF L + + Y+ P+F Sbjct: 202 LIFQDLNLPMRVLRDVLCADTEMVRVDSSETYQRLVDFSNLYAIAALDKLVHYQGERPLF 261 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE +++ +V L S GY+I +QTEAL ++DVN+G + DT +TNLEA Sbjct: 262 DLYSIEQEIEKAMSRKVELKSGGYLIFDQTEALTTVDVNTGSFVSGKNLSDTIFKTNLEA 321 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+ IARQLRLR+L G+I++DFIDM+E +V +L++++ +DRAR + + GL+E Sbjct: 322 AQSIARQLRLRNLGGIIIIDFIDMDEDVQRAAVLDELQKAVARDRARTGINGFTPLGLVE 381 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C+ CKG G +++ +V ILR + Q++A + V Sbjct: 382 MTRKRTRESLAHILCEPCSTCKGRGELKTAQTVCYEILRELLREARQFSARELRVLAAPK 441 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL+++ ++ I++ + A + F I Sbjct: 442 VIEMLLDEESQSLANLSDFIAKPISLQVESSYAQESFDI 480 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +ETR+ ++ + V+EL E + GNIY V RV P +Q+AFV+ Sbjct: 1 MSEEVLINVT-PQETRIAMMENGVVQELQIERSSSLGLVGNIYRGVVCRVLPGMQSAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 IGLQRAAFLHAGDV 73 >gi|153802101|ref|ZP_01956687.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-3] gi|124122345|gb|EAY41088.1| cytoplasmic axial filament protein [Vibrio cholerae MZO-3] Length = 437 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 119/413 (28%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 24 HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 83 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA + E+ +D +L RLW Sbjct: 84 ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 141 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD ++++I++ + + K+F +P Sbjct: 142 SKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 201 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 202 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 261 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 262 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRV 321 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 322 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 381 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ + E E G + + + F + Sbjct: 382 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 434 >gi|330817842|ref|YP_004361547.1| Ribonucleases G and E [Burkholderia gladioli BSR3] gi|327370235|gb|AEA61591.1| Ribonucleases G and E [Burkholderia gladioli BSR3] Length = 489 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 117/404 (28%), Positives = 197/404 (48%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P + Sbjct: 83 HNSTPHQPIEKTVYEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQK 142 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 + + + G I+RT T E+ D YL + W + A Sbjct: 143 IESEAEREAVRARLTAVIPAEEKGGYIVRTIAEDATGEELGADVTYLRKTWATIVAQAHR 202 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 L+Y++ +L +R +RD D S+I V + + F + P+ + + Y Sbjct: 203 LPPTSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFARLSSFAREFTPAVSARLHHYTG 262 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT + Sbjct: 263 ERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFK 322 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S Sbjct: 323 TNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLGELKKALSRDRTRVTVNGFSQ 382 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ V Sbjct: 383 LGLVEMTRKRTRESLAHVLCEPCPVCQGKGQVKTPRTVCYDVLREILRESRQFNPREFRV 442 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L+++ + G +++ + L+ + + I Sbjct: 443 IGSQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|262401495|ref|ZP_06078062.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio sp. RC586] gi|262352210|gb|EEZ01339.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio sp. RC586] Length = 489 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD ++++I++ Y K+F +P Sbjct: 194 SKVIERRGKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRLEYENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALVKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVESVCFEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + + E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVADTLRGDESHALAELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|254507409|ref|ZP_05119544.1| ribonuclease G [Vibrio parahaemolyticus 16] gi|219549665|gb|EED26655.1| ribonuclease G [Vibrio parahaemolyticus 16] Length = 489 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 120/413 (29%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + ++ + G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEDE--RHRLKKVVGHYCDENGGFIIRTAAEGALDKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++++I+V + + K+F +P Sbjct: 194 SKVMERKAKYKNRSTLYGELGLSQRILRDFVGTELTKILVDSRQEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TEKLELYEGDKPIFDMYDTENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALDKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ + E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVADTLHGEESHALAELEVFIGKQVKIQAEPLYIQEQFDV 486 >gi|32035513|ref|ZP_00135460.1| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208286|ref|YP_001053511.1| ribonuclease G [Actinobacillus pleuropneumoniae L20] gi|307254633|ref|ZP_07536464.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259084|ref|ZP_07540814.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|126097078|gb|ABN73906.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306862428|gb|EFM94391.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866751|gb|EFM98609.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 491 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 136/485 (28%), Positives = 225/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q ++VQ+VK+ KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW + E ++Y E L +R +RD IS I + + Y + Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ +V YL+N++ A+I E EA G +I + + Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 >gi|99034527|ref|ZP_01314506.1| hypothetical protein Wendoof_01000685 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 453 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 168/433 (38%), Positives = 254/433 (58%), Gaps = 1/433 (0%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 ++Y +Q+VI Q +LVQ+ KEERGNKGA+ TTY++L GRY V MPN+ +SR+I Sbjct: 1 YKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPNSMSKGGVSRRIE 60 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + RK LKEI + +P G+I+RT G+ + K EI++D+ YL LW ++++ A + Sbjct: 61 DANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKNAFSVNV 120 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+Y E ++I R++RD D E+IVSG++ + + + + R Y P Sbjct: 121 PSLIYNEADVIMRSVRDFCS-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRLYRGYAP 179 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF GIE Q+ L+ V LPS G +II TEA VSIDVNSG+ T E IE+TA +TN+ Sbjct: 180 IFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIEETAYRTNM 239 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EA EI+RQ+ LR L+GLIVVDFIDM + + R+VE +K++ K D+A+VQ I++FGL Sbjct: 240 EAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQFSYINDFGL 299 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 + SRQRI+ ++ E T C +CKG G ++S + SILR ++ + + + H Sbjct: 300 MVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIANKNRNKSFDLVAH 359 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 S V+ ++ N KR T+ E F +++NV I L F +++G V + Sbjct: 360 SAVIAHIFNNKRNTVSTIEKEFNITLNVSIDNSLDVNTFVLKQGDDVNLNGYKPLQNSGY 419 Query: 585 SQAPSYDKNIECV 597 S ++ + Sbjct: 420 QIGDSSNEEADNS 432 >gi|94264387|ref|ZP_01288178.1| Ribonuclease E and G [delta proteobacterium MLMS-1] gi|93455216|gb|EAT05432.1| Ribonuclease E and G [delta proteobacterium MLMS-1] Length = 715 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 182/488 (37%), Positives = 282/488 (57%), Gaps = 10/488 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R ALL+ S + E+V+ G++ S+E A E+ +S Sbjct: 231 PEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGLEKNGFLSF 290 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 N + E P+ + IQ+++K Q +LV++VKE GNKG ++TTYLS Sbjct: 291 NEIHPEYYQQ------EVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTYLS 344 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GR+ VLMP S ISRKI + R L+E+ GL +P G+G I+RTA TK + Sbjct: 345 LPGRFLVLMPG-SDSAGISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKTAL 403 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +L+ LW +R+ + AP L+Y+E N+I R +RD Y DI EI+V E + Sbjct: 404 SQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAEQV 463 Query: 322 KDFMKLLMPSYARIV--RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 ++F++LL S + + ++ PIF + +E Q++ + Q V LPS G ++IN TEAL Sbjct: 464 RNFLQLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTEAL 523 Query: 380 VSIDVNSGR-STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 V+IDVNSGR S+++ E++ N+EAAEE+ARQLR+RDL GLIVVDFIDM + R Sbjct: 524 VAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHTRE 583 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 VEKK++E +K+D+A+V IS FGL+++SRQ++ + + ++ K C YC+G G IRS + Sbjct: 584 VEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSVEN 643 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 +ALS LR ++ + + A ++ +V Y+LN+KR ++E E +G I + + + Sbjct: 644 LALSHLRQIQTGMSRRRAKKVVCQLPMEVAQYILNKKREELLELEKEYGAEIVIEVDAAM 703 Query: 559 ADKLFYIE 566 ++ Sbjct: 704 LPADNRLD 711 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 K+LI+ EE R+ +L +++VE ES + +IKGNIY +VT VE +LQAAFVD G Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282 Query: 64 NRHGFLPFLEIHPDYYQ 80 ++GFL F EIHP+YYQ Sbjct: 283 EKNGFLSFNEIHPEYYQ 299 >gi|89075277|ref|ZP_01161704.1| putative ribonuclease G and E [Photobacterium sp. SKA34] gi|89048958|gb|EAR54526.1| putative ribonuclease G and E [Photobacterium sp. SKA34] Length = 489 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 119/413 (28%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + KK + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKKQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K + + + G I+RTA E+ +D +L LW Sbjct: 136 ASHVGVSQRIESEKERDRLKKAVLQHCDDL--GGFIIRTAAEGANTDEVAQDAAFLKHLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD +I I V + + + K+F +P Sbjct: 194 RKVLERRAKYKPRSMLYGELGLAQRILRDFVGTEIDNIKVDSRQAFDKLKEFTDEFVPEV 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ +V + S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDNIEYYSGQQPIFDLYDTESEIQRSLDRKVEMKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V + L+++L DR Sbjct: 314 RNLDETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMISDEHQQRVLQTLEQALSYDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C G G +++ SV +LR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPSCDGRGTVKTVESVCYEVLREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A IV+ S V L+ + + E E G + + + F + Sbjct: 434 AYDADRFIVYVSSAVGEALMGDESHALAELEVFIGKQVKIKPEPLYNQEQFDV 486 >gi|182412117|ref|YP_001817183.1| ribonuclease [Opitutus terrae PB90-1] gi|177839331|gb|ACB73583.1| ribonuclease, Rne/Rng family [Opitutus terrae PB90-1] Length = 525 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 126/577 (21%), Positives = 241/577 (41%), Gaps = 72/577 (12%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 + LI S E RV +L D R+E+ + E E ++ G IY ++ ++ L+AAFVD G Sbjct: 12 RELIINSEPLEKRVALLVDGRLEKFEIERESDNRMVGGIYKGRIKNLDAGLKAAFVDIGY 71 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 ++ FL + ++ P A + E V + P D +++++ Sbjct: 72 TKNAFLHYWDMLP-----------------AAADSSVEVVRVNKKKNAPPRPVDPTVKDI 114 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + + V+ G +Y I + + + Sbjct: 115 PQMYPPGTDIVIQ---------VTKGPIGTKGPRTTTNLSIPGRYLILTPFSDGCGISRK 165 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 I + + L++ I R + L Sbjct: 166 IEDPAERKRLKQLINELTIP----------EGMGVIVRTAGEGKKARYFVRDLHILLKTW 215 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 I R + + E +L++R +RD Sbjct: 216 QD--ITNKMQNERAPACLYQ---------------------------EPDLVERTVRDFL 246 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 +++ +++ + + + + ++ A + Y+D PIF R IE Q++ Q +V Sbjct: 247 TEEVDRVLIDNREDFERTQQLVAMISKRSANKIAFYKDSIPIFERFNIERQIEQTGQRKV 306 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRS-TREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 LPS G ++I++TEAL+SIDVN+G +R ++ NLEAA EIARQ+RLR+L GL Sbjct: 307 PLPSGGEIVIDETEALISIDVNTGSHKSRGGDEKNVIYAVNLEAATEIARQIRLRNLGGL 366 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 +++DFIDM+E+++ +V +K+ + + D+A+ + IS G+L+M+RQR + S+ + Sbjct: 367 VIIDFIDMKERRHRNAVYEKMVQEMSSDKAKNHILPISTLGILQMTRQRQQESLSSNLYT 426 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQ------YTAHNIIVHTHSDVVLYLLNQKR 536 C YC+G G ++S +++++ + R + + + +++ V H ++ L ++ Sbjct: 427 DCPYCRGRGIVKSATTMSVELQRKLSSVVRRLQLRNDGREYSLRVLVHPSILERLRSEDA 486 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 +V E FGV + + F I + Sbjct: 487 ELLVRMEKLFGVKLAFRADPNYHLENFKIINALTGEE 523 >gi|134296485|ref|YP_001120220.1| ribonuclease G [Burkholderia vietnamiensis G4] gi|134139642|gb|ABO55385.1| RNAse G [Burkholderia vietnamiensis G4] Length = 489 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 117/406 (28%), Positives = 200/406 (49%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 81 EPQSGAPHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGIS 140 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 + + + + G I+RT + E+ D YL + W + A Sbjct: 141 QKIESEAEREAVRARLTAVVPPDEKGGYIVRTIAEDASSEELAGDVAYLRKTWATIVAQA 200 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ +L +R +RD + I V + Y+ +F P+ + + Y Sbjct: 201 QRLPATSLLYQDLDLAQRVLRDFANDQTTRIQVDSRETYQRLAEFAAEFTPAVSPKLHHY 260 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F IE ++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 261 TGERPLFDLYNIETEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI 320 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 321 FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKKALSRDRTRVTVNGF 380 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ + C C+G G +++ +V +LR + Q+ Sbjct: 381 SQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTARTVCYDVLREILRESRQFNPREF 440 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 441 RVIAAQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINLT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 60 IGLERAAFLHVADIWHP 76 >gi|313676684|ref|YP_004054680.1| ribonuclease, rne/rng family [Marivirga tractuosa DSM 4126] gi|312943382|gb|ADR22572.1| ribonuclease, Rne/Rng family [Marivirga tractuosa DSM 4126] Length = 517 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 157/564 (27%), Positives = 270/564 (47%), Gaps = 61/564 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+N+++I+++ +R+ +L D + E+ ++++ ++ G+IYL V +V +Q Sbjct: 1 MSNELIINSTQ-NGSRIALLNDRNLIEIHYDNKEEQFSVGDIYLGNVRKV---MQ----- 51 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G N F D Sbjct: 52 -GLN-AAF-----------------------------------------------VDVGY 62 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ A + + S++ + S + + + I +V+ + + Sbjct: 63 EKDAFLHYHDLGPKVNSLLKYTKFATTRNNTSYKLSKFKLEPEIDKLGKISQVLSKNKQV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE KG ++ LSLAGRY VL+P + G +IS+KI+ +RK L + ++ Sbjct: 123 LVQVIKEPISTKGPRLSCELSLAGRYLVLVPF-ANGISISKKISTSEERKRLTRLISSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RT + E+ D L+ W+N + ++ + E +R Sbjct: 182 PE-NFGVIIRTVAEGKEVAELDTDLRNLLDTWENGVKKLKDAKPKDKIIGEVGRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + I V E+ ++E + +++ + PS +I++ Y + IF GIE QL SL Sbjct: 241 DMMNESFDSIHVDDEETFKEIQTYIQKIDPSKEKILKLYTGRNKIFEHFGIERQLKSLFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V + GY+II TEAL +DVNSG +S+ E EDTAL TNLEAA+EIARQLRLRD+ Sbjct: 301 QSVNVKGGGYLIIEHTEALHVVDVNSGNKSSGEESQEDTALNTNLEAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM+ N + + KK+KE ++ DR++ V +S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMKNPDNKKLLFKKMKEFMETDRSKHTVLPLSKFGLMQVTRQRVRPELNIV 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + C C G G I + V+ I + ++ L + ++ + H + Y + Sbjct: 421 TKESCPTCNGTGKITASILVSDKIEQDLDYLLTKQNEKSLSLAIHPFLYSYYTKGIISLR 480 Query: 540 VEYEARFGVSINVVIGIELADKLF 563 V++ ++G I ++ LA + Sbjct: 481 VKWFFKYGKWIKLIQDSSLALTEY 504 >gi|90412988|ref|ZP_01220986.1| putative ribonuclease G and E [Photobacterium profundum 3TCK] gi|90326003|gb|EAS42442.1| putative ribonuclease G and E [Photobacterium profundum 3TCK] Length = 489 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + KK + I E+++ Q ++VQ++K+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKKQFQVLDISELVRQGQDIVVQVIKDPLGTKGARLTTDVTLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA ++ E+ +D +L LW Sbjct: 136 ASHVGVSQRIESEEERERLKK--VVKYHCDDLGGFIIRTAAEGASEDELGQDAAFLKHLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD ++ I V G+ + K+F + +P Sbjct: 194 RKVIERRAKLKPKSMLYGELGLAQRILRDFVGTELDRIQVDSRLGFEKLKEFTEEFVPEV 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 NDKIDYYAGEQPIFDLFDTENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L DR Sbjct: 314 RNLEETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMAIEDHQRRVLATLEQALSFDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPTCEGRGTVKTVESVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + + E E G + V + F + Sbjct: 434 AYDADRFVVYVSPAVGDVLAGDEYHALAELEVFIGKQVKVKPEPLYIQEQFDV 486 >gi|288926401|ref|ZP_06420323.1| ribonuclease G [Prevotella buccae D17] gi|288336854|gb|EFC75218.1| ribonuclease G [Prevotella buccae D17] Length = 523 Score = 261 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 124/570 (21%), Positives = 221/570 (38%), Gaps = 71/570 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D ++ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVVIDVRQ-DEISIALLEDKQLVEYQNEPRQASFTVGNIYMAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 G R FL +L++ Y++ SDR+ L + + + D G +T Sbjct: 60 VGYERDAFLHYLDLGSQFNSYQKYFKQVQSDRKKLYPFAKATR-----LPDLDKAGSITQ 114 Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 P E + I T+ + F +Y + Sbjct: 115 PLQPGQEVMVQIVKEPISTKGPRLTGE--------------------LSFAGRYLVLIPF 154 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ + +I E + + + I R + L Sbjct: 155 GDKVSVSTKIKSGEERARLKQLIHSIKPKNC-----------GVIVRTVAEGKRVAELDA 203 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L ++ R ++ + A L+ + + Sbjct: 204 ELKVLNQRWEDAIVKVQKTQKRPQLVFEET-----------------GRAVALLRDLFDP 246 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I ++E+ E D +KL Q Sbjct: 247 TYENIYVNDEGVMNEVKHYVSLIAPEKADIVKLYTGKLPIFDNFNITK-----------Q 295 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + + + Y+II TEAL +DVNSG TR+ E AL NL AA+E+ARQL Sbjct: 296 IKASFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRQKGQEANALDVNLGAADELARQL 355 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRD+ G+IVVDFIDM ++ + + +++ ++++KDRA+ + +S FGL++++RQR+R Sbjct: 356 RLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVRP 415 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 ++ + + C C G G IRS + ++ + + +H H V Y+ Sbjct: 416 AMDVNVEETCPTCNGTGKIRSSILFTDQLEGKIDRLVNKIGISTFSLHVHPYVAAYINQG 475 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFY 564 + +++ ++G I+VV +LA + Sbjct: 476 VFSLKRKWQLKYGFGISVVPSQKLAFLQYE 505 >gi|323496109|ref|ZP_08101169.1| ribonuclease G [Vibrio sinaloensis DSM 21326] gi|323318853|gb|EGA71804.1| ribonuclease G [Vibrio sinaloensis DSM 21326] Length = 489 Score = 261 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEEERNRLKK--VVGHYCDENGGFIIRTAAEGALDKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++++I+V + + K+F +P Sbjct: 194 LKVMERKAKYKTRSTLYGELGLSQRILRDFVGTELTKILVDSRQEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TEKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALDKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ + E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVADTLHGEESHALAELEVFIGKQVKIQAEPLYIQEQFDV 486 >gi|332664547|ref|YP_004447335.1| ribonuclease, Rne/Rng family [Haliscomenobacter hydrossis DSM 1100] gi|332333361|gb|AEE50462.1| ribonuclease, Rne/Rng family [Haliscomenobacter hydrossis DSM 1100] Length = 519 Score = 261 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 136/565 (24%), Positives = 253/565 (44%), Gaps = 61/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++++ E + +L D ++ EL ++ + G+I+L KV R+ P L AA Sbjct: 1 MEKDLIVNST-PTEVEIALLEDGKLVELHYQKTNNNFTVGDIFLGKVRRLMPGLNAA--- 56 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I + + D+ L Sbjct: 57 ----------FVDIG-------------------------HKKDAFLHYTDLGPKLRSLL 81 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + +++ T + ++ + I +V+ R + Sbjct: 82 KFTQQVSSGQSNTFSLDNFAIEPEI-------------------NKNGKIDQVLNKRHNV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE KG ++ +++ GRY VL P T +S+KI N +RK LK + ++ Sbjct: 123 LVQVLKEPISTKGPRLSCEITIPGRYLVLTPFTD-VVAVSKKIANNEERKRLKVLIESIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RTA + ++ + Y++ W+ + + + P + E + +R Sbjct: 182 PK-NFGVIVRTAAEGKKVADLHEELSYMLEKWEEMYKSMYKTEGPAKLLSELDKTSSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL + I+V+ ++ Y K ++ + P IV Y+ IF G+ Q+ + Sbjct: 241 DLLSDSFTRIVVNDKELYLNIKSYLGSIAPDQVNIVSHYKGTKSIFETHGVTRQIQASFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 T+ S Y++I TEA+ IDVNSG E+ ++ N+EA EEIARQLRLRD+ Sbjct: 301 KTATMSSGAYLVIESTEAMHVIDVNSGHKMSSTNAEEAVMKVNMEAVEEIARQLRLRDIG 360 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM + + + K++K+++KKDRA+ + +S FGL++++RQR+R V T Sbjct: 361 GIIIIDFIDMRNLEFRKDLVKEMKQAMKKDRAQHTILPLSKFGLMQITRQRVRPEVKIDT 420 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 T+VC C+G G + + I R + + I + H + YL ++I Sbjct: 421 TEVCPTCEGTGKTNASILMVTDIERDLAYIQSTHPKSRIKLVVHPYLQAYLTKGWFSSIQ 480 Query: 541 -EYEARFGVSINVVIGIELADKLFY 564 ++ ++ +++ + Sbjct: 481 WKWFKQYFRRVDIKADGTYHLGKYR 505 >gi|54310354|ref|YP_131374.1| ribonuclease G [Photobacterium profundum SS9] gi|46914795|emb|CAG21572.1| putative ribonucleases G and E [Photobacterium profundum SS9] Length = 489 Score = 261 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + KK + I E+++ Q ++VQ++K+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKKQFQVLDISELVRQGQDIVVQVIKDPLGTKGARLTTDVTLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA ++ E+ +D +L LW Sbjct: 136 ASHVGVSQRIESEEERERLKK--IVKYHCDDLGGFIIRTAAEGASEDELGQDAAFLKHLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + ++Y E L +R +RD ++ I V G+ + K+F + +P Sbjct: 194 RKVIERRIKLKPKSMLYGELGLAQRILRDFVGTELDRIQVDSRLGFEKLKEFTEEFVPEV 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 NDKIDYYAGEQPIFDLFDTENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L DR Sbjct: 314 RNLEETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMAIEDHQRRVLATLEQALSFDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPTCEGRGTVKTVESVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + + E E G + V + F + Sbjct: 434 AYDADRFVVYVSPAVGDVLAGDEYHALAELEVFIGKQVKVKPEPLYIQEQFDV 486 >gi|83719989|ref|YP_441562.1| ribonuclease G [Burkholderia thailandensis E264] gi|83653814|gb|ABC37877.1| ribonuclease G [Burkholderia thailandensis E264] Length = 508 Score = 261 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 117/396 (29%), Positives = 197/396 (49%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + + Sbjct: 110 IEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAERE 169 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + G I+RT T E+ D YL + W + L+Y Sbjct: 170 AVRARLTAVIPADEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTSLLY 229 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ +L +R +RD D + I V + ++ DF P+ + + Y P+F Sbjct: 230 QDLDLAQRVLRDFANDDTTRIQVDSRETHQRLVDFAAEFTPAVSPKLHHYTGERPLFDLY 289 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 IE ++ V L S GY++I+QTEA+ +IDVN+G +DT +TNLEAA Sbjct: 290 NIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHT 349 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V S GL+EM+R Sbjct: 350 IARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVEMTR 409 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ + C C+G G +++ +V ILR + Q+ V V+ Sbjct: 410 KRTRESLAHVLCEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQVID 469 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L+++ + G +++ + L+ + + I Sbjct: 470 LFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 505 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 21 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 79 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 80 IGLERAAFLHVADI 93 >gi|285019220|ref|YP_003376931.1| ribonucleases g and e protein [Xanthomonas albilineans GPE PC73] gi|283474438|emb|CBA16939.1| putative ribonucleases g and e protein [Xanthomonas albilineans] Length = 496 Score = 261 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 136/424 (32%), Positives = 228/424 (53%), Gaps = 2/424 (0%) Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 NDVV G + E P I E++++ Q ++VQ+VK+ G+KGA +TT +S+ Sbjct: 71 NDVVRPAPVCNGDTDETPPLPVSAAVPIMELLRDGQEIVVQVVKDPIGSKGARLTTQISI 130 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG-MGVILRTAGASRTKIEI 261 RY VL+P S+ +S +I + +R LK + L G G I+RT + + Sbjct: 131 PSRYLVLLP-QSRVIGVSARIEDEAERLRLKTMVADLAASHGGFGYIIRTNAEGQPAEAL 189 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 D YL R+W+ V + ++YE+ +L RA+RDL KD+ ++ V + Sbjct: 190 AEDIAYLSRVWNVVERRGRDGAPASIIYEDLSLPLRAVRDLIRKDVEKVKVDSHDTFERL 249 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F+ MP A + Y PIF G+E ++ +V L S GY++I+QTEA+ + Sbjct: 250 QAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIARALDKQVPLKSGGYLVIDQTEAMTT 309 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G + +E+T +TNLEAA+ +ARQLRLR+L G+I++DFIDM + ++ R V + Sbjct: 310 IDVNTGSFLGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMSDAEHRRQVLR 369 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+++L +D A+ V S GL+EM+R+R S+ ++ C C G G I++ +V Sbjct: 370 TLEKALSRDHAKTTVYDFSPLGLVEMTRKRTVESLERQLSEPCPQCGGRGSIKTAETVTY 429 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 I R + + Q+ A ++V + VV + +++ + + E E G +I + + Sbjct: 430 EIFREITRAVRQFDAARLLVIASTKVVARITDEESSAVAEMEEFLGKTIRFQADEQYLQE 489 Query: 562 LFYI 565 F + Sbjct: 490 QFDV 493 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MSQEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGQVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|315608691|ref|ZP_07883669.1| ribonuclease G [Prevotella buccae ATCC 33574] gi|315249541|gb|EFU29552.1| ribonuclease G [Prevotella buccae ATCC 33574] Length = 523 Score = 261 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 124/570 (21%), Positives = 221/570 (38%), Gaps = 71/570 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D ++ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVVIDVRQ-DEISIALLEDKQLVEYQNEPRQASFTVGNIYMAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 G R FL +L++ Y++ SDR+ L + + + D G +T Sbjct: 60 VGYERDAFLHYLDLGSQFNSYQKYFKQVQSDRKKLYPFAKATR-----LPDLDKAGSITQ 114 Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 P E + I T+ + F +Y + Sbjct: 115 PLQPGQEVMVQIVKEPISTKGPRLTGE--------------------LSFAGRYLVLIPF 154 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ + +I E + + + I R + L Sbjct: 155 GDKVSVSTKIKSGEERARLKQLIHSIKPKNC-----------GVIVRTVAEGKRVAELDA 203 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L ++ R ++ + A L+ + + Sbjct: 204 ELKVLNQRWEDAIVKVQKTQKRPQLVFEET-----------------GRAVALLRDLFDP 246 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I ++E+ E D +KL Q Sbjct: 247 TYENIYVNDEGVMNEVKHYVSLIAPEKADIVKLYTGKLPIFDNFNITK-----------Q 295 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + + + Y+II TEAL +DVNSG TR+ E AL NL AA+E+ARQL Sbjct: 296 IKASFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRQKGQEANALDVNLGAADELARQL 355 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRD+ G+IVVDFIDM ++ + + +++ ++++KDRA+ + +S FGL++++RQR+R Sbjct: 356 RLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVRP 415 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 ++ + + C C G G IRS + ++ + + +H H V Y+ Sbjct: 416 AMDVNVEETCPTCNGTGKIRSSILFTDQLEGKIDRLVNKIGISTFSLHVHPYVAAYINQG 475 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFY 564 + +++ ++G I+VV +LA + Sbjct: 476 VFSLKRKWQLKYGFGISVVPSQKLAFLQYE 505 >gi|313202748|ref|YP_004041405.1| ribonuclease, rne/rng family [Paludibacter propionicigenes WB4] gi|312442064|gb|ADQ78420.1| ribonuclease, Rne/Rng family [Paludibacter propionicigenes WB4] Length = 524 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 132/565 (23%), Positives = 232/565 (41%), Gaps = 61/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D E + +L D R+ EL+ E ++ GNIYL +V ++ P L AAFVD Sbjct: 1 MNSELVVDVKTS-EISIALLEDKRLVELNQEGREEQFAVGNIYLGRVKKIMPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +L++ ++ + QAL + ++ Sbjct: 60 VGYDKDAFLHYLDLGSNFNTLTQFTTQALSDRKKTPAIQKTKLQPEIEKNGSINDILKPG 119 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +++ + + ++A + ++ + ++ + Sbjct: 120 QDILVQVTKEPISTKGPRLTAEISIA-------------------GRFLVLIPFADKVSV 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I EE + + + G I R + L + L Sbjct: 161 SQKIKTEEERQRLKQLIQSIKPKGF-----------GVIVRTVAEEKKVAELDNELKILV 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 VI + L+ EE IR Sbjct: 210 KRWEEAVI-----------------------------KTQQTKGVSLILEELGRTVGIIR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ I ++ + + E +D++ L+ P IV+ Y+D PI+ GI Q+ S Sbjct: 241 DLFSPSFKHIHINDQAVFAEVRDYVNLIAPDRKDIVKLYQDELPIYDSFGITKQIKSAFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V+ + Y+II TEAL +DVNSG RS + ED AL NL AA+EIARQLRLRD+ Sbjct: 301 KTVSFKNGAYLIIEHTEALHVVDVNSGNRSKAGNGQEDNALDVNLAAADEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM E +N + + +++E++ DRA+ + +S FGLL+M+RQR+R + Sbjct: 361 GGIIVVDFIDMHETENRQKLFDRMRENMANDRAKHNILPLSKFGLLQMTRQRVRPVIHID 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C G G + + ++ + + +H H V Y+ + Sbjct: 421 IEETCPTCFGHGKTKPSILFTDQLESKIDYLVNKLLIKEFTLHIHPYVDAYISKGLFSMK 480 Query: 540 VEYEARFGVSINVVIGIELADKLFY 564 +++ +FG V+ +L + Sbjct: 481 WQWKRKFGKGCKVIAAQKLGFLQYK 505 >gi|307256859|ref|ZP_07538637.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864593|gb|EFM96498.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 491 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 137/485 (28%), Positives = 226/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPIGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW + E ++Y E L +R +RD IS I + + Y + Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLVEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ +V YL+N++ A+I E EA G +I + + Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 >gi|261253980|ref|ZP_05946553.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio orientalis CIP 102891] gi|260937371|gb|EEX93360.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio orientalis CIP 102891] Length = 489 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 D K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVADNEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEQERNRLKK--VVGHYCDENGGFIIRTAAEGADEKELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++++I+V + K+F +P Sbjct: 194 SKVIERRSKYKTRATLYGELGLSQRILRDFVGTELNKILVDSRIEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLELYEGEKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ V L+ +L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMIADEHRNRVLTSLENALDKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR V Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVESVCYEILREVTRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + + E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVAETLQGDESHALAELEVFIGKQVKIQAEPLYIQEQFDV 486 >gi|307245670|ref|ZP_07527756.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853372|gb|EFM85591.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 491 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 136/485 (28%), Positives = 225/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q ++VQ+VK+ KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW + E ++Y E L +R +RD IS I + + Y + Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ +V YL+N++ A+I E EA G +I + + Sbjct: 424 EILREIVRVHHLFKIEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 >gi|303252271|ref|ZP_07338437.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247793|ref|ZP_07529830.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648730|gb|EFL78920.1| ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855736|gb|EFM87902.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 491 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 136/485 (28%), Positives = 224/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q ++VQ+VK+ KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEEVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +L RLW + E ++Y E L +R +RD IS I + + Y + Sbjct: 184 HQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTHISSIRIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ +V YL+N++ A+I E EA G +I + + Sbjct: 424 EILREIVRVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKTIEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 >gi|78485847|ref|YP_391772.1| ribonuclease [Thiomicrospira crunogena XCL-2] gi|78364133|gb|ABB42098.1| RNAse G [Thiomicrospira crunogena XCL-2] Length = 490 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 116/564 (20%), Positives = 208/564 (36%), Gaps = 80/564 (14%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 K+L++ + ETRV + + ++E+ E +K+ + GNIY+ KV RV P +QAAFVD Sbjct: 4 EEKVLVNVT-PSETRVAWVENGVLQEVWVERANKRGLVGNIYIGKVDRVLPGMQAAFVDI 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G R FL +I ++A+ KE + D E + + G + Sbjct: 63 GLERTAFLHVSDI----------CKRAIGKE---VEEDCEDITKFLHAGQKVMVQVVKDP 109 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 + A + S + + + ++ + K Sbjct: 110 ISSKGARLTMHVTIPSRMLVYMPDEKMIGVSQKIEDAGERERLREIIHSIPEAKE----- 164 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 S G I R + D ++ L+ Sbjct: 165 --------------------------------SDGGYIVRTVAEGADFHEVRADLVYLQR 192 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 VI A + I D + + ++ + + +++ + Sbjct: 193 LW--SVIQEKAKGVKKSALIYEDLPLYLHILRDIPIDRIEIIRVDSAETYKKMVEFSSAY 250 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQT 361 + + SGE+ + + + + V + I ++ +D Sbjct: 251 VMDLSDKLGLYSGERPIFDLYSIEDEIQQALEKRVDLKSGGYLIIDQTEAMTTID----- 305 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 VN+G +E+T +TNLEA + IARQLRLR+L G Sbjct: 306 ----------------------VNTGGFVGHKNLEETIYRTNLEATQAIARQLRLRNLGG 343 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +I++D IDM++K++ SV L+ L+KDR + + ISN GL+EM+R+R R S+ Sbjct: 344 IIILDLIDMDDKEHKASVYSALQRELQKDRVKTSITEISNLGLVEMTRKRTRESLERILC 403 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541 + C C G G +++ ++A + R + + A V VV Y+L++ + E Sbjct: 404 EPCPVCHGRGTVKTPETIAFEVFREITRMAKSFDAEYYRVIASEPVVSYILDEASGNVAE 463 Query: 542 YEARFGVSINVVIGIELADKLFYI 565 E SI + F + Sbjct: 464 LETFLNKSIRFQAEGGYFIEQFDV 487 >gi|238921343|ref|YP_002934858.1| ribonuclease G [Edwardsiella ictaluri 93-146] gi|238870912|gb|ACR70623.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 489 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + A G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRI--DSEAERERLKAIVAPHCDALGGFIIRTAAEGIDDEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + ++Y E L R +RD ++ I V Y +DF + MP Sbjct: 194 IKVMERKRRNKTKCMLYGELALAPRVLRDFAGAPLNRIRVDSRLTYDLLQDFTREYMPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 THCLELYSGKQPIFDMYDVENEIQRALERRVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L ++L KDRA Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSCEDHRRRVLHSLDQALGKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V +LR + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCGECPTCHGRGTVKTVETVCYEVLREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHALAEVELFVGKQVKVQIEPLYSQEQFDV 486 >gi|120555635|ref|YP_959986.1| ribonuclease [Marinobacter aquaeolei VT8] gi|120325484|gb|ABM19799.1| RNAse G [Marinobacter aquaeolei VT8] Length = 493 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 234/486 (48%), Gaps = 8/486 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + G++ + A E + I A Sbjct: 11 PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVDIGLERAAFIHA 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + I+ +++ Q L+VQ+ K+ G KGA +TT LS Sbjct: 71 SDVVSGQTSGDE------PSDAPRTVPDIRTLLREGQSLVVQVTKDPIGTKGARLTTQLS 124 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKI 259 + RY V MP R + + +L E G I+RTA + + Sbjct: 125 IPSRYLVFMPGVCHVGISQRIEDDNERARLKSLIEEGAAEHDDVQGGYIIRTAAEAASAE 184 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 ++ D YL RL +++E + AP +VY++ L R IRDL ++ + + Y+ Sbjct: 185 DLIADMTYLHRLSQSIQERIAKAPAPSVVYQDLPLFIRTIRDLIRPQTEKVRIDSRESYQ 244 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +F+K + +A V Y PIF +E ++ +V L S GYVII+QTEA+ Sbjct: 245 RVMEFVKEFVTEFADKVEYYPGERPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAM 304 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +ID+N+G +E+T +TNLEAA I+RQLRLR+L G+I++DFIDME+ ++ R V Sbjct: 305 TTIDINTGAFVGHRNLEETIFKTNLEAARAISRQLRLRNLGGIIIIDFIDMEDPEHQRQV 364 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + L++ L++D A+ ++ +S GL+EM+R+R S+ + + C C G G++++ +V Sbjct: 365 HRMLEKMLERDHAKTKITGVSELGLVEMTRKRTTESLGQVLCEPCPICDGRGFLKTAETV 424 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 I R + Y A N +V VV LL+++ + + E +I + + Sbjct: 425 CYEIFREILRVNRAYEAENYLVMASQKVVDRLLDEESDNVADLETFISKTIRFQVEPFYS 484 Query: 560 DKLFYI 565 + + + Sbjct: 485 QEQYDV 490 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ + ++E E +K I GNIY KV RV P ++AAFVD Sbjct: 1 MSEEILINVT-PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G R F+ ++ Sbjct: 60 IGLERAAFIHASDVVS 75 >gi|238028190|ref|YP_002912421.1| ribonucleases G and E [Burkholderia glumae BGR1] gi|237877384|gb|ACR29717.1| Ribonucleases G and E [Burkholderia glumae BGR1] Length = 489 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 199/409 (48%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 P P I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 78 PPGDPHASVPHPPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHI 137 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 + + + + G I+RT T E+ D YL + W + Sbjct: 138 GISQKIESEAEREAVRARLTAVIPPEEKGGYIVRTIAEDATAEELGADVAYLRKTWTTIV 197 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 A A L+Y++ +L +R +RD D S+I V + + +F P+ + + Sbjct: 198 AQAQRLPATSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFARLSNFATEFTPAVSARL 257 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 Y P+F IE ++ V L S GY++I+QTEA+ +IDVN+G + Sbjct: 258 HHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFD 317 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 DT +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK++L +DR RV V Sbjct: 318 DTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHREAVLGELKKALSRDRTRVTV 377 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 S GL+EM+R+R R S+ + C C G G +++ +V +LR + Q+ Sbjct: 378 NGFSQLGLVEMTRKRTRESLAHVLCEPCPVCMGKGQVKTPRTVCYDVLREILRESRQFNP 437 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V V+ L+++ + G +++ + L+ + + I Sbjct: 438 REFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQEQYDI 486 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E + GNIYL KV RV P +Q+AF+D Sbjct: 1 MNEEILINIT-PQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|121998916|ref|YP_001003703.1| ribonuclease [Halorhodospira halophila SL1] gi|121590321|gb|ABM62901.1| RNAse G [Halorhodospira halophila SL1] Length = 482 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 133/406 (32%), Positives = 224/406 (55%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 I +++ +Q LLVQ++K+ GNKGA +TT +++ RY VL P++ Sbjct: 74 QRDSGGPPPPIDRLLREQQALLVQVIKDPIGNKGARLTTQITVPSRYLVLTPHSCGVGVS 133 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 +R + G+I RTA + ++ D ++L+RLW+++R A Sbjct: 134 ARIEEEAERERLRGVAQGFDAERGEAGLIFRTAAEGASGEALRADHDFLVRLWESIRRRA 193 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 + LV+E+ L+ RA+RDL +D+ + V +GY DF K L+P A V Y Sbjct: 194 GEAQPGTLVHEDLPLLLRALRDLATRDLERVRVDSREGYLRLGDFCKDLLPHIAERVELY 253 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 PIF G+E +++ V L S G++II+QTEA+ +IDVN+G +++T Sbjct: 254 AGERPIFDLYGVEEEIERALSRRVDLKSGGHLIIDQTEAMTTIDVNTGGFVGNRNVDETI 313 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA+ IARQLRLR+L G+I+VDFIDM + ++ R V + L+++L++D A+ Q+GA+ Sbjct: 314 FKTNLEAAQAIARQLRLRNLGGIIIVDFIDMTDAEHRRQVLRALEKALERDHAKTQIGAV 373 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S+ GL+EM+R+R R S+ + T + C C+G G ++S +V I R + + Q+ + + Sbjct: 374 SSLGLVEMTRKRTRESLEQVTCEPCPTCRGRGTVKSAETVVYEIFREILREVRQFESQRV 433 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 IV VV LL+++ ++ + E I + + + + Sbjct: 434 IVLAAPSVVEVLLDEESTSLAQLEEFIERPIELQVESLYVADQYDV 479 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ + ++E+ E ++ + GNIYL +V RV P +QAAFVD Sbjct: 1 MSQEILINLT-PRETRVALVENGVLQEVHLERARRRGLVGNIYLGQVRRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G R FL ++ D Sbjct: 60 AGLERTAFLHVSDLQRD 76 >gi|147677164|ref|YP_001211379.1| ribonucleases G and E [Pelotomaculum thermopropionicum SI] gi|146273261|dbj|BAF59010.1| ribonucleases G and E [Pelotomaculum thermopropionicum SI] Length = 561 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 132/425 (31%), Positives = 221/425 (52%), Gaps = 3/425 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I +++K Q +LVQIVKE G KG VTT+++L GRY VLMP + Sbjct: 90 NICDILKQGQEVLVQIVKEPIGTKGPRVTTHITLPGRYLVLMPTVDYIGI--SRRIESER 147 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 + + P GMGVI+RT + E ++D L +LW V A + P+LV Sbjct: 148 ERERLKELASRVKPEGMGVIVRTVAEGVDEEEFRQDVGLLTKLWRKVLSRAAHGPVPNLV 207 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 + + L++R +RD++ +D+ +I+ Y + D + + P ++ ++ IF Sbjct: 208 HRDLELVQRILRDVFTEDVDRLILDSRYEYEKVLDLLDITGPRL-KLKVFLDERDSIFEE 266 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 GIE +++ + +V L S GY++I+Q EAL ++DVN+G+ +EDT L+TNLEAA Sbjct: 267 YGIEQEIEKALKRKVWLKSGGYLVIDQAEALTAVDVNTGKYVGTTNLEDTVLKTNLEAAR 326 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 EIARQLRLR++ G+++VDFIDM +++ + V + L+E +KKD+ + + I+ GL+EM+ Sbjct: 327 EIARQLRLRNIGGIVIVDFIDMSREEHRQEVVRTLEEEIKKDKTKTNILGITQLGLVEMT 386 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+++R S+ E K C YC G G + S+ ++ +S + Q TA I+V + V Sbjct: 387 RKKVRPSLSEVIQKPCPYCDGKGRVLSEETLGISFKNQIYNMARQTTAKTILVEANPVVA 446 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 L+ A + + E + G S+ + + I + + V Sbjct: 447 ARLIGSGGANLRDLENKTGKSLYIRGVASHHIESIVIRPLHDNEQVQARTLPVKPGEVLE 506 Query: 589 SYDKN 593 + Sbjct: 507 VKVEE 511 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++ EETRV VL D E+ E +++ GNI+ +V V P +QAAFV+ Sbjct: 1 MLKEIVVNVGE-EETRVAVLEDRVPVEIYIERSVNQRLVGNIFKGRVENVLPGMQAAFVN 59 Query: 61 YGGNRHGFLPFLE 73 G ++ FL + Sbjct: 60 IGLEKNAFLYVED 72 >gi|83589420|ref|YP_429429.1| ribonuclease G [Moorella thermoacetica ATCC 39073] gi|83572334|gb|ABC18886.1| RNAse G [Moorella thermoacetica ATCC 39073] Length = 562 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 141/504 (27%), Positives = 241/504 (47%), Gaps = 11/504 (2%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 ++ L+++ A+ + A+ +D ++ + D + V I + +A D+ Sbjct: 3 KEILIQDD--AEETAVALLEDGRLMEIYLERDSNQRLVGNIYKGRVANVLPGMQAAFVDI 60 Query: 146 VSN------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 V+D G + + + I +V++ Q +LVQ+ KE +G KGA VTT Sbjct: 61 GLEKNAFLFVDDTSGIEALEGEIVSRSRRRISDVVREGQEILVQVAKEPQGTKGARVTTQ 120 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 ++L GRY VLMP + R + + + + P MG+I+RT A Sbjct: 121 ITLPGRYLVLMPTVNYIGVSRRI--SHEEERERLKNLARAVKPRRMGLIVRTVAAGAGLE 178 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E++ D + L R W +R+ A S AP LV+ + L R +RDLY D++ ++V+ Y Sbjct: 179 ELQADCQNLTRTWKRIRQAARRSKAPRLVHHDVELSLRILRDLYADDVNRLVVNSPATYA 238 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 + + + P+ R + +F G++ Q++ + +V L GY+II+Q EAL Sbjct: 239 KVLEVLAGRAPNL-RQRVILRENADLFAVYGVQNQIEQALKRKVWLRCGGYLIIDQMEAL 297 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +IDVN+G+ H + +T L TNLEAA E+ARQLRLR++ G+IVVDFIDM+ + V Sbjct: 298 TAIDVNTGKYVGRHNLAETVLTTNLEAAVEVARQLRLRNIGGIIVVDFIDMDNPLHREQV 357 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 K L+ L KD+ + Q+ + GLLEM+R++ + + + C YC G G + S +V Sbjct: 358 IKVLEGELTKDKTKTQILGFTRLGLLEMTRKKAQQRLESVLQQDCPYCHGTGKVLSAETV 417 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 L + + + A I+ + V L+ A + E R G + + Sbjct: 418 TLKARKEILQLAAVSKARAILAEANPAVAAPLIGVGGANLRTLERRAGKKLIIKGNENFH 477 Query: 560 DKLFYIEKGSPVQALVNTGHKVGS 583 + + + + + N V Sbjct: 478 LEEVRLRELFDREEIANLSTPVKV 501 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI EET V +L D R+ E+ E + +++ GNIY +V V P +QAAFVD Sbjct: 1 MLKEILI-QDDAEETAVALLEDGRLMEIYLERDSNQRLVGNIYKGRVANVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLE 73 G ++ FL + Sbjct: 60 IGLEKNAFLFVDD 72 >gi|91776464|ref|YP_546220.1| ribonuclease G [Methylobacillus flagellatus KT] gi|91710451|gb|ABE50379.1| RNAse G [Methylobacillus flagellatus KT] Length = 483 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 125/403 (31%), Positives = 213/403 (52%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 +++ IQEV+ Q ++VQ++KE G KGA +TT +S+AGR+ V +P R Sbjct: 78 SPEKEKAIQEVLHEGQPIMVQVIKEPIGTKGARLTTQISIAGRFLVYLPQQQHIGVSQRI 137 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + R L G I+RT + T E+ D +YL ++W N++ + + Sbjct: 138 EDEAERELLRERLLRLLPEKREGGYIIRTMSEAATDEELLADIDYLQKVWSNIQAASHGA 197 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 LV+++ +L R +RD+ D I+V + Y++ DF + + Y+ Sbjct: 198 ADRSLVFQDLDLPMRVLRDVVNDDTERILVDSRETYQKLLDFASHYAVGAVKRIELYQGA 257 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 P+F +E +++ +V L S GY+I +QTEAL ++DVN+G + DT +T Sbjct: 258 RPLFDMYNVEHEINKAMSRKVELKSGGYLIFDQTEALTTVDVNTGGFVTGRSLSDTIFKT 317 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAA+ IARQLR+R+L G+I++DFIDM+E++ +V +LK+++ KDRAR V S Sbjct: 318 NLEAAQCIARQLRVRNLGGIIIIDFIDMDEEEQQSAVLAELKKNVAKDRARTGVNGFSTL 377 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 GL+EM+R+R R S+ + C CKG G +++ ++ I R + Q+TA + Sbjct: 378 GLVEMTRKRTRESLAHLLCEPCPSCKGRGEVKTAQTICYEIFRELLRNAKQFTAREFRIL 437 Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL+++ ++ G I++ A + + I Sbjct: 438 AAPKVIELLLDEESQSLANLSDFIGKPISLQAETHYAQETYDI 480 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +ETRV ++ ++EL E + GNIY KV RV P +Q+AFV+ Sbjct: 1 MSEEILINVT-PQETRVAIVEQGVLQELHVERATSLGLVGNIYRGKVCRVLPGMQSAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLQRAAFLHVADI 73 >gi|299768911|ref|YP_003730937.1| ribonuclease G, endoribonuclease G [Acinetobacter sp. DR1] gi|298698999|gb|ADI89564.1| ribonuclease G, endoribonuclease G [Acinetobacter sp. DR1] Length = 469 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 123/412 (29%), Positives = 214/412 (51%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ Q L VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 56 NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 115 Query: 217 ETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + N+ E + G VI+RTA + EI +D YL +LW+ Sbjct: 116 GVSQRIESEEERERLRNIIEGIQSEHNLPG-SVIVRTAAEGVDEAEIAQDMCYLSKLWEY 174 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL + ++I V + + + +F++ +P+ Sbjct: 175 IQRKQIDVAVPSLIFEELPLPQRIIRDLASDETAKIYVDSREIHAKLLEFVEEFVPNMQS 234 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 235 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 294 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G++++DFIDM+E + V ++ ++ L++D A+ Sbjct: 295 LEDTVFKTNMEATQVIARQLRLRNLGGILIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 354 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 355 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 414 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 415 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 466 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 + ++ + V EL E K+ + GNIY KV RV P +QAAFVD G +R FL ++ Sbjct: 1 MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDM 58 >gi|269104080|ref|ZP_06156777.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Photobacterium damselae subsp. damselae CIP 102761] gi|268163978|gb|EEZ42474.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Photobacterium damselae subsp. damselae CIP 102761] Length = 489 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 131/484 (27%), Positives = 217/484 (44%), Gaps = 8/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ N+ + E + G++ + A ++ + + A Sbjct: 11 PSETRVAMIEDGNLQEIHIERESKRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHA 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + I E+++ Q L+VQ+VK+ G KGA +TT ++ Sbjct: 71 SDIVPHTECVAENEKQ------QFQVRDISELVRQGQDLVVQVVKDPLGTKGARLTTDVT 124 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + K G I+RTA + E+ Sbjct: 125 LPSRYLVFMPGASHVGVSQRIESEHERERLKK--IVMPHCDDLGGFIIRTAAEGASDEEL 182 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +L LW V E ++Y E L +R +RD +I I V + + Sbjct: 183 SQDAAFLKHLWRKVIERRAKYKTRSMLYGELGLAQRILRDFVGTEIHNIKVDSRLAFDKL 242 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F +P + Y PIF E ++ +V L S GY+II+QTEA+ + Sbjct: 243 KEFTDEFVPEVTENIEYYSGDQPIFDLYDTENEIQRSLDRKVELKSGGYLIIDQTEAMTT 302 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +D+N+G +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + R V + Sbjct: 303 VDINTGAFVGRRNLEETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMAGEDHQRRVLQ 362 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+++L DR + + + GL+EM+R+R R S+ C CKG G +++ SV Sbjct: 363 ALEQALSGDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPTCKGRGTVKTVESVCY 422 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR V Y A +V+ V L + + E E G + + + Sbjct: 423 EILREVTRVNRAYDADRFVVYVSPVVADALSGDEYHALAELEVFIGKEVKIKAEPLYIQE 482 Query: 562 LFYI 565 F + Sbjct: 483 QFDV 486 >gi|92114358|ref|YP_574286.1| ribonuclease G [Chromohalobacter salexigens DSM 3043] gi|91797448|gb|ABE59587.1| RNAse G [Chromohalobacter salexigens DSM 3043] Length = 487 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 122/409 (29%), Positives = 217/409 (53%), Gaps = 3/409 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 I +++ Q L+VQ+ K+ G+KGA +TT+LS+ RY V MP++ Sbjct: 76 PNASVDEHVTITHLLQEGQPLVVQVTKDPIGSKGARLTTHLSVPSRYLVYMPDSPHTGVS 135 Query: 220 SRKITNPVDRKNL---KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R + + + A GVI+RTA + E+ D +L+RLW V Sbjct: 136 QRIEDENERERLKTLIEAAHADMREGAPGGVIIRTAAEGVGQEELTADMHFLLRLWRKVE 195 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 E ++V P L+Y++ L R +RD+ ++ + + + Y + K+F K MP + Sbjct: 196 ERQHSAVPPALLYDDLPLFIRTLRDVMRDEVERVRIDSRENYVKLKEFAKEFMPDVESCI 255 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 Y P+F +E ++ +V L S GY++I+QTEA+ +IDVN+G +E Sbjct: 256 EYYPGERPLFDLYSVEDEIQKALGRKVQLKSGGYLVIDQTEAMTTIDVNTGGYVGHRNLE 315 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T +TNLEAA IARQLRLR+L G+I++DFIDME+ ++ R V + L+++L++D A+ ++ Sbjct: 316 ETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDPEHQRQVLRVLEKALERDHAKNKL 375 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 ++ GL++++R+R R S+ ++ + C C+G G +++ +V I R + Y+ Sbjct: 376 TGVTELGLVQVTRKRTRESLEQTLCEPCLTCQGRGTLKTPETVCYEIFREILREERAYSP 435 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V VV LL+++ + + E+ G +I + + + + I Sbjct: 436 ETYMVLASQAVVDRLLDEESTAVADLESFIGKTIRFQVEAHYSQEQYDI 484 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV V+ + ++E E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSGEVLINLT-PMETRVAVVENGVLQEAFIERSRRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G R F+ E+ Sbjct: 60 IGLERAAFIHVNEVVS 75 >gi|77919635|ref|YP_357450.1| ribonuclease E [Pelobacter carbinolicus DSM 2380] gi|77545718|gb|ABA89280.1| RNAse E [Pelobacter carbinolicus DSM 2380] Length = 926 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 213/635 (33%), Positives = 340/635 (53%), Gaps = 12/635 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A++++ +++ D E + T G++ +E A +E + Sbjct: 12 PEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVDYGSERLGFLQI 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + ++ +G + ++ I ++++ Q +LVQIVKEERG KGAA+TTYLS Sbjct: 72 GEIHPAFFKEAEG------RVEAGKRPRINDILRRGQEILVQIVKEERGTKGAALTTYLS 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP+ S + ISRKI DRK L+E+ LE+P MG I+RTAG+++ + ++ Sbjct: 126 LPGRYMVLMPD-SDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQKRTDL 184 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 KRD +YL+RL++ ++ L+ ++ AP L+Y+E NL+ R+IRD + D+ E++V K EA Sbjct: 185 KRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKVSTEA 244 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +DF + +MP YA +V+ +++ PIF R IE Q++S+ + +V LPS G ++I+ TEALV+ Sbjct: 245 RDFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTEALVA 304 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVNSG+ E +E TA +TNLEAA E ARQLRLRDL GL+V+DFIDM ++K+ R +EK Sbjct: 305 IDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIRDIEK 364 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LKE++K D+ARV +G IS FGLLEMSRQRI+S++ ++ +VC +C G+G I++ + +L Sbjct: 365 TLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIEAQSL 424 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 LR + L + + DV YLLN KR ++ E + VSI++ + + Sbjct: 425 GFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPDYMNG 484 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 I+ + + + + + D P + + + + Sbjct: 485 QGEIDFHKREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRKSSAA 544 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + ++ AT DA +++ V + + EP E Sbjct: 545 TPVSEPSTLTTESEEQQPAAT--QDAAESQPMATDTEVAREVSEKTAEPVSTEATEPAEK 602 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 A + P S + P KKT Sbjct: 603 TAEPAS---AAEEQPQKPSRPRSRSGRRKPATKKT 634 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 92/722 (12%), Positives = 199/722 (27%), Gaps = 33/722 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M KMLI+A+H EE RV ++ D + ELD E K+Q KGNIY A V RVE LQAAFVD Sbjct: 1 MTKKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTHGDVTIPNDH 118 YG R GFL EIHP +++ +A + ++I + E + V T Sbjct: 61 YGSERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAAL 120 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + P + ++ + + + + + Y ++ ++ Sbjct: 121 TTYLSLPGRYMVLMPDSDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQK 180 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 ++ + + + S++ ++ R + + L + A+ Sbjct: 181 RTDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKV 240 Query: 239 LEVPAGMGV-----ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 + + I ++ ++ + + +V + Sbjct: 241 STEARDFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE 300 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 + + + + + + Sbjct: 301 ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR 360 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ + + V GR ++ +E + + A Sbjct: 361 DIEKTLKEAMKTDK--------------ARVTIGRISQFGLLEMSRQRIKSALAAASFEV 406 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 + +G I + + +++ L K R +V A + R Sbjct: 407 CPHCNGSGKIKT------IEAQSLGFLRRIHTGLAKGRI-GRVEATVPLDVASYLLNNKR 459 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 ++ K I+ + S V+ N Sbjct: 460 VELMAIEQKNDVSIH----IKGCPDYMNGQGEIDFHKREKEETQATAYIEASQVMSETNN 515 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 ++ + + E + + + + S + + A S Sbjct: 516 AQQDSTTDTEEKPAKRRRRPRRRRKSSAATPVSEPSTLTTESEEQQPAATQDAAESQPMA 575 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + E + S E + + E ++ ++ R R + Sbjct: 576 TDTEVAREVSEKTAEPVSTEATEPAEKTAEPASAAEEQPQKPSRPRSRSGRRKPATKKTE 635 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME-SSNSSSDPI 712 + + + + E P + PE + + + P Sbjct: 636 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 695 Query: 713 VK 714 K Sbjct: 696 AK 697 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 5/150 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQD---EALLPIPKSESLEDIQDNIVSEESTG 626 + + ++SQ + D + + E + + + + +EE Sbjct: 556 ESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPAEKTAEPASAAEEQPQ 615 Query: 627 VIRKRRRRRRRRRPATDHHD-AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R RR+PAT + + + + + E Sbjct: 616 KPSRPRSRSGRRKPATKKTEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 675 Query: 686 FTENYDVSIPPVSTPEME-SSNSSSDPIVK 714 P + PE + + + P K Sbjct: 676 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAK 705 Score = 39.6 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 13/157 (8%), Positives = 25/157 (15%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K P + + + E+ Sbjct: 753 KPEAKPKAKPKVESEAQSEAMPEAKPKTTRRAPSRSRTKTKTKTETAESNTSATGTETDT 812 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 K + + PA + D + Sbjct: 813 PSEKDEKPAETKPPAKRARARRTTKPTAKTATQASDDVSPAEKDETAKATETAAPKRRTR 872 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S S+++ KK + RK Sbjct: 873 ARKTTAKTVKSGDDASSVSASNAEEAEKKKPTRRPRK 909 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 3/160 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E + +A+ K + + S K E+ +E+ + + E Sbjct: 763 KVESEAQSEAMPEAKPKTTRRAPSRSRTKTKTKTETAESNTSATGTETDTPSEKDEKPAE 822 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + +R R RR T DVS + P T Sbjct: 823 TKPPA--KRARARRTTKPTAKTATQASDDVSPAEKDETAKATETAAPKRRTR-ARKTTAK 879 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + S+ + E E + P + + K Sbjct: 880 TVKSGDDASSVSASNAEEAEKKKPTRRPRKPAAKAVEESK 919 >gi|332528328|ref|ZP_08404328.1| ribonuclease G [Hylemonella gracilis ATCC 19624] gi|332042199|gb|EGI78525.1| ribonuclease G [Hylemonella gracilis ATCC 19624] Length = 497 Score = 259 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 122/402 (30%), Positives = 203/402 (50%), Gaps = 3/402 (0%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI--- 223 I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P + Sbjct: 93 PQPIEKQVFEGQSLMVQVIKDPIGTKGARLSTQISIAGRLLVFLPQDDHIGVSQKIPLAE 152 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + ++ +++ + G ILRT T E+ D YL + W ++E + Sbjct: 153 RDALRQRLQNIVSQAVGEKKSGGFILRTNAEEATDAELAEDIAYLRKTWVRIKEASQRLA 212 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 A L++ + NL++R +RDL + I V + + + F + MP A + Y+ Sbjct: 213 AKSLLHLDLNLLQRVLRDLVGERTGSIKVDSREQFEALRAFGQEFMPGAATKLELYKGER 272 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 PIF GI+ ++ V L S GY+I++QTEAL +IDVN+G +DT +TN Sbjct: 273 PIFDLYGIDEEVARALGRRVDLKSGGYLIVDQTEALTTIDVNTGGFVGARNFDDTIFKTN 332 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAA IARQLRLR+L G+I+ DFIDM + + +V + ++ L +DR + +G S G Sbjct: 333 LEAAGAIARQLRLRNLGGIIIADFIDMTREDHREAVLAEFRKQLARDRVKTMLGGFSQLG 392 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 LLEM+R+R R S+ + C +C+G G +++ SVA ILR + Q+ V Sbjct: 393 LLEMTRKRTRESLAHMLCEPCPHCQGTGQVKTTRSVAYEILREILREARQFNPREFRVLA 452 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL+++ + G I++ + + I Sbjct: 453 APQVIELLLDEESQHLAGLSDFIGKPISLQSETSMWQGQYDI 494 >gi|260775580|ref|ZP_05884477.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio coralliilyticus ATCC BAA-450] gi|260608761|gb|EEX34926.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio coralliilyticus ATCC BAA-450] Length = 489 Score = 259 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEEERNRLKK--VVGHYCDEDGGFIIRTAAEGADDTELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++++I+V + K+F +P Sbjct: 194 SKVNERRSKYKTRSTLYGELGLSQRILRDFVGTELTKILVDSRLEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLELYEGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMLSEEHRKRVLTSLEAALDKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGSVKTVESVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L + + E E G + V + F + Sbjct: 434 AYEADKFVVYASPSVADALQGDESHALAELEVFIGKQVKVQAEPLYIQEQFDV 486 >gi|262172489|ref|ZP_06040167.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio mimicus MB-451] gi|261893565|gb|EEY39551.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio mimicus MB-451] Length = 489 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 208/413 (50%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S +S++I + +R+ LK + G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVG-VSQRIESEEERERLKAVVNHYCDEHG-GFIIRTAAEGANEKELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD ++++I++ + + K+F +P Sbjct: 194 SKVIERRGKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TTKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALVKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVESVCFEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ + E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|33152666|ref|NP_874019.1| ribonuclease G [Haemophilus ducreyi 35000HP] gi|33148890|gb|AAP96408.1| ribonuclease G [Haemophilus ducreyi 35000HP] Length = 490 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 135/485 (27%), Positives = 229/485 (47%), Gaps = 10/485 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVEDGLLKELHIEREAKRGLVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDESEKKQFV------VKDIAELVREGQDIIVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEQERNR--LKALVEPHCDELGGFIIRTAAEDVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW + E A ++Y E L +R +RD IS + + ++ + Sbjct: 184 RQDSIFLKRLWRKILERKAKYPARSMLYGELALAQRILRDFVGTQISAVRIDSKQTLEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 DF+ MP V Y H +F G+E + V L S GY+II QTEA+ + Sbjct: 244 TDFLNEFMPELTESVTLYNGSHTLFD-YGVEEAIQKALDKRVNLKSGGYLIIEQTEAMTT 302 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + DT TN+EA + IA QL+LR+L G+I++DFIDM+++++ V + Sbjct: 303 IDINTGAFVGHRNLADTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQQEEHRERVLE 362 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+LK DR + V + GL+EM+R+R R S+ C C G G +++ +V Sbjct: 363 VLREALKNDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPVCNGRGTVKTIETVCY 422 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + Y++ I V+ +V YL+N++ A++ E EA G + + + Sbjct: 423 EILREIVRVHYLYSSEKIRVYASKEVAEYLINEETHASLAELEAFIGKKVEIKLEPYYHQ 482 Query: 561 KLFYI 565 F + Sbjct: 483 DQFDV 487 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 1 MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M + ++L++ + ETRV ++ D ++EL E E K+ + GNIY +VTRV P +Q+AFV Sbjct: 1 MTSAELLMNVT-PSETRVALVEDGLLKELHIEREAKRGLVGNIYKGRVTRVLPGMQSAFV 59 Query: 60 DYGGNRHGFLPFLEIHP 76 D G + FL +I Sbjct: 60 DIGLEKAAFLHASDIVS 76 >gi|258623373|ref|ZP_05718377.1| cytoplasmic axial filament protein [Vibrio mimicus VM573] gi|258627019|ref|ZP_05721817.1| cytoplasmic axial filament protein [Vibrio mimicus VM603] gi|258580693|gb|EEW05644.1| cytoplasmic axial filament protein [Vibrio mimicus VM603] gi|258584339|gb|EEW09084.1| cytoplasmic axial filament protein [Vibrio mimicus VM573] Length = 489 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 208/413 (50%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S +S++I + +R+ LK + G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVG-VSQRIESEEERERLKAVVNHYCDEHG-GFIIRTAAEGANEKELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD ++++I++ + + K+F +P Sbjct: 194 SKVIERRGKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALVKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVESVCFEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ + E E G + + + F + Sbjct: 434 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 486 >gi|332799479|ref|YP_004460978.1| ribonuclease, Rne/Rng family [Tepidanaerobacter sp. Re1] gi|332697214|gb|AEE91671.1| ribonuclease, Rne/Rng family [Tepidanaerobacter sp. Re1] Length = 563 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 144/594 (24%), Positives = 241/594 (40%), Gaps = 78/594 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L D + ++ R+ VL D ++ E E + ++I GNIY KV V P +QAAFVD Sbjct: 1 MSKEILADVAR-DQIRIGVLEDRQLVEYYVEKTYDERITGNIYKGKVANVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +++ Y + F D A+ D V +V V P Sbjct: 60 IGLGKNAFLYVGDLNS--YNLGFEDADAIGDLKKAPIKDILHVGQEVLVQVVKEPIGTKG 117 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 V+ + +E+ + Sbjct: 118 ARVSTNITLPGRYLVLMPTVDYIGISRRIENEEERQR----------------------- 154 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L + P+ I R D +NLK L+ Sbjct: 155 ---------------------LKSLAEEIQPH--NMGIIVRTAAEGEDIENLKSDMEYLK 191 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I + I +D + L R+ +V Sbjct: 192 RLWN--NIQMKQKNGKVPRLIYKDMDLLTRMVRDV------------------------- 224 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 + ++++ V+ GY + + L+ S V Y IF IE +++ + Sbjct: 225 --FTPEVNKFYVNTSYGYEKVLEAASLISHSLKDRVSLYMGQEDIFEYFNIESEVERALE 282 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY++I+ TEAL +IDVN+G+ +EDT ++TNLEAA+EIA+QLRLRD+ Sbjct: 283 RKVWLKSGGYIVIDHTEALTAIDVNTGKFVGSINLEDTVVKTNLEAAKEIAKQLRLRDIG 342 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM+ +++ + V L+ LKKDR + V I+N GL+EM+R+++R S+ E Sbjct: 343 GIIIIDFIDMDSQEHQKMVIDALEIELKKDRTKAHVLGITNLGLVEMTRKKVRQSLHEVL 402 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 KVC YC G G I S+ ++A + + + I++ H V ++ + Sbjct: 403 EKVCPYCDGRGRILSEETMAKKVEQEISRIFRTRKGEAILIEVHPSVAAVVIGAGGTRLS 462 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 + E R+G I + +L + I+ L N V ++ Sbjct: 463 QLEQRYGKYIFIKGKDDLHPEEIRIKAVGSRVKLENFAMPVREGQIIDVIIEDR 516 >gi|322514328|ref|ZP_08067381.1| ribonuclease G [Actinobacillus ureae ATCC 25976] gi|322119782|gb|EFX91816.1| ribonuclease G [Actinobacillus ureae ATCC 25976] Length = 491 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 223/485 (45%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A ++ + A E+ + + A Sbjct: 12 PSETRVALVENGLLKELHIEREAKRGIVSNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q ++VQ+VK+ KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFV------VKDIAELVREGQDIIVQVVKDPISTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKELVEPYCDELGGFIVRTAAEEVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW + E ++Y E L +R +RD IS I + + Y + Sbjct: 184 QQDTIFLKRLWRKILERKAKYPVKSMLYGELALAQRVLRDFVGTYISSIRIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLAEFMPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQ 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ +V YL+N++ A+I E EA G + + + Sbjct: 424 EILREIVRVHHWFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKKVEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETRV ++ + ++EL E E K+ I NIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PSETRVALVENGLLKELHIEREAKRGIVSNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|258404590|ref|YP_003197332.1| ribonuclease, Rne/Rng family [Desulfohalobium retbaense DSM 5692] gi|257796817|gb|ACV67754.1| ribonuclease, Rne/Rng family [Desulfohalobium retbaense DSM 5692] Length = 489 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 168/421 (39%), Positives = 254/421 (60%), Gaps = 3/421 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + + PKK + + +V+K Q +LVQ+VKE G+KGA +TT Sbjct: 67 AKKNGFLQVDEVHQEYYQNDIKPKKGYKYPPLHKVLKPGQEVLVQVVKEPTGSKGAFLTT 126 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSL GRY VL P + ISRKI + +R+ L++I ++ G+G+ILRT +++TK Sbjct: 127 YLSLPGRYFVLTPGREQTG-ISRKIDDEKERERLRKIIEDFKLDPGIGLILRTVSSNQTK 185 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 + RD ++L RLW VR+ ++ AP L+YEE +L RA+RD D+SE+ V ++ Sbjct: 186 TNLSRDLQFLKRLWKEVRKRGVSEKAPSLIYEEKDLAFRAVRDYLTDDVSEVWVDHQETA 245 Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++ K++ L P R+V+Q+ + +F R + QL S++ +VTLPS G ++ +QTE Sbjct: 246 KQIKEYASLAFPRRNRLVKQHTDADRSLFERFNLIDQLQSVYSRQVTLPSGGSLVFDQTE 305 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL++ID+NSG+ E + AL+TNLEAAEEI QLRLRD+ G +V+DFI+M++ K++R Sbjct: 306 ALMAIDINSGKIGGESNFAEMALKTNLEAAEEIPHQLRLRDIGGQVVIDFIEMKDNKHSR 365 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK L+ ++K D+AR VG IS FGLLEM RQR+ SS L +T + C C+GAG R+ Sbjct: 366 DVEKTLRAAVKDDKARTSVGRISRFGLLEMVRQRMGSSALSTTMEPCPCCQGAGIRRNLE 425 Query: 498 SVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 A+ LR + L + A + ++ LYLLN KR + E E F +I + Sbjct: 426 WQAMQALRDIRYQLNKKNGASTLDFPIGKELALYLLNTKRDRLTELEQEFQTTITISATD 485 Query: 557 E 557 Sbjct: 486 N 486 Score = 97.4 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 48/78 (61%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM I E+ VV+ +D +V+E E ++ + KGNIY + ++P+LQAAF+ YG Sbjct: 7 RKMFISVLPGEQIEVVIAQDAKVQEYYVEMLNQAKTKGNIYKGTINNIDPALQAAFIQYG 66 Query: 63 GNRHGFLPFLEIHPDYYQ 80 ++GFL E+H +YYQ Sbjct: 67 AKKNGFLQVDEVHQEYYQ 84 >gi|218887464|ref|YP_002436785.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758418|gb|ACL09317.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 491 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 164/477 (34%), Positives = 264/477 (55%), Gaps = 5/477 (1%) Query: 81 IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 +P + L E + + ++ H T N + N Sbjct: 15 LPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFVNYG-AD 73 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 N + + + + K K+ +Q+V+K Q +LVQ+VKE G+KGA +TTYL Sbjct: 74 KNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAFLTTYL 133 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 S+ GR+ VL P + +SRK+ + +R L+E+ GL G+GVI+RT A +K Sbjct: 134 SMPGRFLVLTPGREQIG-VSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAGTSKTT 192 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 ++RD ++L RLW ++R+ AP L+Y+E +L RA+RD D++E+ V E Sbjct: 193 LQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDEHTATL 252 Query: 321 AKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +++ LL P +V+ + ++ R GI+ QL+ ++ EVTLPS G ++ +QTEAL Sbjct: 253 IEEYSSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVFDQTEAL 312 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 ++ID+NSG+ + + E AL+TN+EAAE IA+QL+LRD+ G +V+DFI+M ++ + R V Sbjct: 313 MAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDRNHWREV 372 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EK L+ ++K DRAR VG +S FGLL++ RQR SS L T + C CKG+G R+ Sbjct: 373 EKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLRRNMEWQ 432 Query: 500 ALSILRSVEEYLLQYTAHNII--VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 +L LR + L + T ++V ++LLN KR +++ E +FGV +++ Sbjct: 433 SLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLERQFGVHLDIRP 489 Score = 97.7 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%) Query: 4 KMLIDASHVEETRVVVLRDN----RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 +M I E+ V + + +V+E E H+ + KGNIY + V+ +LQAAFV Sbjct: 9 RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68 Query: 60 DYGGNRHGFLPFLEIHPDYYQIP 82 +YG +++GFL E+HP+YY P Sbjct: 69 NYGADKNGFLQIDEVHPEYYNTP 91 >gi|311695342|gb|ADP98215.1| ribonuclease, Rne/Rng family [marine bacterium HP15] Length = 493 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 235/486 (48%), Gaps = 8/486 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + G++ + A E + I A Sbjct: 11 PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVDIGLERAAFIHA 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V S + K I+ +++ Q L+VQ+ K+ G KGA +TT LS Sbjct: 71 SDVVPSQSNGDE------PADTPKTVPDIRSLLREGQSLVVQVTKDPIGTKGARLTTQLS 124 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKI 259 + RY V MP S R + + L E A + G I+RTA + + Sbjct: 125 IPSRYLVFMPGVSHVGISQRIEDDTERARLKTLVEEAAAEDQDVQGGYIIRTAAEAASPE 184 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 ++ D YL RL ++ E AP +VY++ L R IRDL ++ + + ++ Sbjct: 185 DLIGDMAYLHRLSQSIHERIARVQAPAVVYQDLPLFIRTIRDLIRPQTEKVRIDSRESHQ 244 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +F++ + +A V Y PIF +E ++ +V L S GYVII+QTEA+ Sbjct: 245 RVMEFVEEFVTEFADKVEYYPGERPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAM 304 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +ID+N+G +E+T +TNLEAA I+RQLRLR+L G+I++DFIDME+ ++ R V Sbjct: 305 TTIDINTGAFVGHRNLEETIFKTNLEAARAISRQLRLRNLGGIIIIDFIDMEDPEHQRQV 364 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + L++ L++D A+ ++ +S GL+EM+R+R S+ + + C C G G++++ +V Sbjct: 365 HRMLEKMLERDHAKTKITGVSELGLVEMTRKRTTESLGQVLCEPCPICDGRGFLKTTETV 424 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 + R + Y A + +V VV LL+++ + + E +I + + Sbjct: 425 CYEVFREILRVNRAYDAESYLVMASQSVVDRLLDEESDNVADLETFISKTIRFQVEPFYS 484 Query: 560 DKLFYI 565 + + + Sbjct: 485 QEQYDV 490 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ + ++E E +K I GNIY KV RV P ++AAFVD Sbjct: 1 MSEEILINVT-PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G R F+ ++ P Sbjct: 60 IGLERAAFIHASDVVP 75 >gi|293394183|ref|ZP_06638483.1| ribonuclease G [Serratia odorifera DSM 4582] gi|291423161|gb|EFE96390.1| ribonuclease G [Serratia odorifera DSM 4582] Length = 489 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+I G G I+RTA E+ +D +L RLW Sbjct: 136 AAHVGVSQRIESEAERDR-LKKIVGAYCDDLG-GFIIRTAAEGIGDEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +++Y E L +R +RD + I V + +F +P Sbjct: 194 TKVMERKKRNQTKYMLYGELALAQRILRDFAGAALDRIRVDSRLTHDLLVEFTAEYIPDM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 SSKLELYTGSQPIFDLYDVENEVQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEEHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHVLCHDCPTCNGRGTVKTVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ + V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|88608043|ref|YP_506020.1| ribonuclease [Neorickettsia sennetsu str. Miyayama] gi|88600212|gb|ABD45680.1| ribonuclease, Rne/Rng family [Neorickettsia sennetsu str. Miyayama] Length = 549 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 163/607 (26%), Positives = 260/607 (42%), Gaps = 82/607 (13%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+LID+ ETR+ +LR + D E + KGNIY V +V+ SLQAAFV+Y Sbjct: 2 KKILIDSRDG-ETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEYL 60 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 +GFLPF EI Y+ LL+E + H + T L Sbjct: 61 PGEYGFLPFSEIPVIYF--------DLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVL 112 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 + + T++ ++ + K +YC+ IL Sbjct: 113 FVQVTKEKRRTKDVTLTA--------------------YVKLPGRYCVLMPFLKDLILSK 152 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 QIV E+ +SR + ++ Sbjct: 153 QIVDEQ-----------------------------AVSRLTHFAEEEMANRKC------- 176 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 GV+ + A K I D+ L+ W+ V S AP LV+ E NL+K+ +RD Sbjct: 177 ---GVVFKPYCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDS 233 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 Y + E+IV+ Y+EAKD+++ + + Y D P+F + +E Q+D L++ Sbjct: 234 YDGSVGEVIVNHSDVYQEAKDYIQNSLHFENPNITLYSDTLPVFDKYKVEPQVDGLYEET 293 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 + L + Y++IN TEAL ++DVNSGR +E IE+TA + N+EA EI R L LR +AG+ Sbjct: 294 IYLRNGAYIVINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGI 353 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 +V+DFIDM K +VE+ L ++ K+ R+RVQ+ I+ FGL+ +S+QR + ++L+S T Sbjct: 354 VVIDFIDMNNSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTV 413 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 C C+G G + + R + V + ++ + + N R + + Sbjct: 414 KCPCCEGKGKVLKMEH---QVRRVFSAIYTAPRCREVTVTANPELAVAVFNGYRKMLAQA 470 Query: 543 EARFGVSINVVIGIEL-----------ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 E G SI I +L I + V V + ++ S Sbjct: 471 EKVVGGSIVFKIDEKLGLAKGFEIAFHGKDDVEILREDQVLTTVEDQSNEKTVTEGSSVV 530 Query: 592 KNIECVW 598 K Sbjct: 531 KVESRRS 537 >gi|16762129|ref|NP_457746.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766665|ref|NP_462280.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143618|ref|NP_806960.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415297|ref|YP_152372.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181878|ref|YP_218295.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616389|ref|YP_001590354.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552925|ref|ZP_02346676.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993954|ref|ZP_02575047.1| ribonuclease G [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233953|ref|ZP_02659011.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239395|ref|ZP_02664453.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245047|ref|ZP_02669979.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262609|ref|ZP_02684582.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463396|ref|ZP_02697313.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444534|ref|YP_002042625.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449343|ref|YP_002047398.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472427|ref|ZP_03078411.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734919|ref|YP_002116318.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251153|ref|YP_002148294.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261610|ref|ZP_03161684.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364227|ref|YP_002143864.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245300|ref|YP_002217339.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389106|ref|ZP_03215718.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931177|ref|ZP_03221971.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354271|ref|YP_002228072.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858618|ref|YP_002245269.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022705|ref|ZP_03337152.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051957|ref|ZP_03344835.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213647004|ref|ZP_03377057.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865157|ref|ZP_03387276.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585167|ref|YP_002638966.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913550|ref|ZP_04657387.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25516553|pir||AG0911 ribonuclease G (EC 3.1.4.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421930|gb|AAL22239.1| RNase G [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504432|emb|CAD07885.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi] gi|29139253|gb|AAO70820.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129554|gb|AAV79060.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129511|gb|AAX67214.1| RNase G [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365753|gb|ABX69521.1| hypothetical protein SPAB_04198 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403197|gb|ACF63419.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407647|gb|ACF67866.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458791|gb|EDX47630.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710421|gb|ACF89642.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633335|gb|EDX51749.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095704|emb|CAR61273.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214856|gb|ACH52253.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239865|gb|EDY22485.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287894|gb|EDY27282.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939816|gb|ACH77149.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606204|gb|EDZ04749.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319944|gb|EDZ05150.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274052|emb|CAR39058.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322513|gb|EDZ10352.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328120|gb|EDZ14884.1| ribonuclease G [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332024|gb|EDZ18788.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336179|gb|EDZ22943.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348575|gb|EDZ35206.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710421|emb|CAR34779.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469695|gb|ACN47525.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248533|emb|CBG26371.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995575|gb|ACY90460.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159919|emb|CBW19438.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914398|dbj|BAJ38372.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225208|gb|EFX50267.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614511|gb|EFY11441.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618267|gb|EFY15158.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625980|gb|EFY22794.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626750|gb|EFY23547.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631318|gb|EFY28078.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635415|gb|EFY32129.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643415|gb|EFY39979.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322649745|gb|EFY46172.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655581|gb|EFY51887.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658389|gb|EFY54654.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664387|gb|EFY60583.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667393|gb|EFY63555.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674641|gb|EFY70733.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675728|gb|EFY71801.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682364|gb|EFY78387.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684771|gb|EFY80772.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716368|gb|EFZ07939.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131731|gb|ADX19161.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196151|gb|EFZ81311.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196717|gb|EFZ81862.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204354|gb|EFZ89363.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207702|gb|EFZ92649.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210008|gb|EFZ94913.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214277|gb|EFZ99030.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219045|gb|EGA03551.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225032|gb|EGA09285.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230384|gb|EGA14503.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233360|gb|EGA17454.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239397|gb|EGA23447.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242352|gb|EGA26378.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247294|gb|EGA31259.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250384|gb|EGA34268.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256832|gb|EGA40547.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263884|gb|EGA47403.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264095|gb|EGA47603.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271646|gb|EGA55065.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625118|gb|EGE31463.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629394|gb|EGE35737.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990228|gb|AEF09211.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 489 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V + + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 486 >gi|241766069|ref|ZP_04763984.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN] gi|241363925|gb|EER59219.1| ribonuclease, Rne/Rng family [Acidovorax delafieldii 2AN] Length = 495 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 126/424 (29%), Positives = 211/424 (49%), Gaps = 2/424 (0%) Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 V + GG +K + I++ + Q L+VQ++K+ G KGA ++T +S+A Sbjct: 69 HVADVWQRQDGGEAPMFARKGEPPVPIEKQVFEGQSLMVQVIKDPIGTKGARLSTQISIA 128 Query: 204 GRYSVLMPNTSKGETISRKI--TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 GR V +P + R L+ + G G ILRT G + E+ Sbjct: 129 GRLLVYLPQDDHVGVSQKIPVAERDALRARLQALVGDKASGGGGGFILRTNGEDSSDAEL 188 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 D YL + W ++E +L A L++++ +L++R +RDL I + + + Sbjct: 189 AEDIAYLRKTWARIKEASLRLPATSLLHQDLDLLQRVLRDLVGDHTQTIRIDSVEQFHRL 248 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + F + MP+ A ++ Y+ PIF I+ ++ V L S GY+I++QTEAL + Sbjct: 249 RAFGQEFMPAAAGKLQHYKGERPIFDLYSIDEEVSKALGRRVDLKSGGYLIVDQTEALTT 308 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVN+G +DT +TNLEAA+ IARQLRLR+L G+I+VDFIDM + + +V Sbjct: 309 VDVNTGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMAREDHQEAVLT 368 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + K+ L +DR + G S GL+EM+R+R R S+ + C+ C+GAG +++ SV Sbjct: 369 EFKKQLARDRVKTMSGGFSQLGLVEMTRKRTRESLAHMLCEPCSVCQGAGQVKTARSVCY 428 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +LR + Q+ V VV L+++ + G I++ + + Sbjct: 429 DVLREILREARQFNPREFRVVASPRVVELFLDEESQHLAGLSDFIGKPISLQAESAMGQE 488 Query: 562 LFYI 565 + I Sbjct: 489 QYDI 492 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ S +ETRV V+ V+EL E ++ + GN+YL KV+RV P +Q+AF+D Sbjct: 1 MQQDILINWS-PQETRVAVVEHGAVQELHIERTLERGLVGNVYLGKVSRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 IGLERAAFLHVADV 73 >gi|330446794|ref|ZP_08310445.1| ribonuclease G [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490985|dbj|GAA04942.1| ribonuclease G [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 489 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 129/484 (26%), Positives = 218/484 (45%), Gaps = 8/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+++ + + E + G++ + A ++ + + A Sbjct: 11 PSETRVAMIEHGVLQEIHIERESKRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHA 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + K + I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 71 SDIVPHTECVAENEK------KQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDIT 124 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + K + + + G I+RTA E+ Sbjct: 125 LPSRYLVFMPGASHVGVSQRIESEKERDRLKKAVMQHCDDL--GGFIIRTAAEGANTDEV 182 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +L LW V E ++Y E L +R +RD +I I V + + Sbjct: 183 AQDAAFLKHLWRKVLERRAKYKPRSMLYGELGLAQRILRDFVGTEIDNIKVDSRLSFEKL 242 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F +P + Y PIF E ++ +V + S GY+II+QTEA+ + Sbjct: 243 KEFTDEFVPEVTENIEYYSGQQPIFDLYDTEAEIQRSLDRKVEMKSGGYLIIDQTEAMTT 302 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G +++T TN+EA + IARQLRLR+L G+I++DFIDM ++ R V + Sbjct: 303 IDINTGAFVGRRNLDETIFNTNIEATKAIARQLRLRNLGGIIIIDFIDMVSDEHQRRVLQ 362 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+++L DR + + + GL+EM+R+R R S+ C C G G +++ SV Sbjct: 363 ALEQALSYDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCGTCPSCDGRGTVKTVESVCY 422 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR + Y A IV+ S V L + + E E G + + + Sbjct: 423 EILREITRVNRAYDADRFIVYVSSAVGEALTGDESHALAELEVFIGKQVKIKPEPLYNQE 482 Query: 562 LFYI 565 F + Sbjct: 483 QFDV 486 >gi|312884606|ref|ZP_07744309.1| ribonuclease G [Vibrio caribbenthicus ATCC BAA-2122] gi|309367698|gb|EFP95247.1| ribonuclease G [Vibrio caribbenthicus ATCC BAA-2122] Length = 489 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 122/413 (29%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + +N + G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRI--DSEEERNRLKRVVGKYCDEDGGFIIRTAAEGADDKELSQDASFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++++I+V + K+F +P Sbjct: 194 SKVTERRAKYKTRSTLYGELGLSQRVLRDFVGTELTKILVDSRLEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YE PIF E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TEKLELYEGEKPIFDMYDTENEIQRALERKVVLKSGGYLIIDQTEAMTTIDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V L+ SL KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMTSEEHRQRVIHSLQVSLDKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV +LR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHILCSTCPTCEGRGRVKTVESVCYEVLREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V+ V L + + E E G + + + F + Sbjct: 434 AYDVDKFVVYASPAVADTLQGDEYHALAELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|146313317|ref|YP_001178391.1| ribonuclease G [Enterobacter sp. 638] gi|145320193|gb|ABP62340.1| RNAse G [Enterobacter sp. 638] Length = 489 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G G I+RTA ++ ++ D YL R+W Sbjct: 136 ASHVGVSQRIESEDERERLKK--VVGAYCDEQGGFIIRTAAEGISEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTYDALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 PGLLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV VC C G G ++S +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNVCPTCNGRGTVKSVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQQQFDV 486 >gi|240949400|ref|ZP_04753741.1| ribonuclease G [Actinobacillus minor NM305] gi|240296149|gb|EER46805.1| ribonuclease G [Actinobacillus minor NM305] Length = 491 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 132/485 (27%), Positives = 224/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V K I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFVVKN------ISELVREGQDIIVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEDVAHESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW V + ++Y E L +R +RD IS + + + + + Sbjct: 184 EQDTIFLKRLWRKVLDRKAKYPTRSMLYGELALAQRVLRDFVGTHISSVKIDSKITFEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLNEFMPELTDSVSLYSGTQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRDLAHTIFNTNIEATKAIAHQLQLRNLGGIIIIDFIDMQEEEHRLRVLE 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+++LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLEQALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ +V YL++++ A++ E EA G + + + Sbjct: 424 EILREIVRVHHLFNTEKVRVYASKEVAEYLIHEETHASLAELEAFIGKKVEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 >gi|167855018|ref|ZP_02477792.1| ribonuclease G [Haemophilus parasuis 29755] gi|167853866|gb|EDS25106.1| ribonuclease G [Haemophilus parasuis 29755] Length = 491 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 140/485 (28%), Positives = 227/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V K I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDESEKKQFVVKN------ISELVREGQDIVVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA S ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKSLVEPYCDELGGFIVRTAADSVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW V E A L+Y E L +R +RD I I + + Y + Sbjct: 184 EQDAAFLKRLWRKVLERKGKYPARSLLYGELALAQRVLRDFVGTHIHSIQIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP A+ V Y P+F IE + V L S GY+II QTEA+ + Sbjct: 244 KEFLAEFMPELAKNVSLYSGTLPLFDVYRIEDGIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ + V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRQRVLE 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +LK DR + V + GL+EM+R+R R S+ C+ CKG G I++ +V Sbjct: 364 SLELALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCSSCKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-IVEYEARFGVSINVVIGIELAD 560 I+R V Y + +V+ V YL+N++ + E E G + + I Sbjct: 424 EIVREVVRVHHLYKSERYVVYASRSVAEYLINEESHALLAELEVFIGKKVEIKIEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETRV ++ + ++E+ E E K+ + GNIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|161506076|ref|YP_001573188.1| ribonuclease G [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867423|gb|ABX24046.1| hypothetical protein SARI_04263 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 489 Score = 257 bits (655), Expect = 5e-66, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V + + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 486 >gi|223042068|ref|ZP_03612244.1| ribonuclease G [Actinobacillus minor 202] gi|223017143|gb|EEF15579.1| ribonuclease G [Actinobacillus minor 202] Length = 491 Score = 257 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 224/485 (46%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V K I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEKKQFVVKN------ISELVREGQDIIVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKALVEPYCDELGGFIVRTAAEDVAHESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW V E ++Y E L +R +RD IS + + + + + Sbjct: 184 EQDTIFLKRLWRKVLERKAKYPTRSMLYGELALAQRVLRDFVGTHISSVKIDSKITFEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP V Y +F G+E + V L S GY+II QTEA+ + Sbjct: 244 KEFLNEFMPELTDSVSLYSGTQTLFDAYGVEEAIQKALDKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + Sbjct: 304 IDINTGAFVGHRDLAHTIFNTNIEATKAIAHQLQLRNLGGIIIIDFIDMQEEEHRLRVLE 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+++LK DR + V + GL+EM+R+R R S+ C CKG G I++ +V Sbjct: 364 SLEQALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCPACKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 ILR + + + V+ DV YL++++ A++ E EA G + + + Sbjct: 424 EILREIVRVHHLFNTEKVRVYASKDVAEYLIHEETHASLAELEAFIGKKVEIKLEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETRV ++ + ++EL E E K+ I GNIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|219870358|ref|YP_002474733.1| ribonuclease G [Haemophilus parasuis SH0165] gi|219690562|gb|ACL31785.1| ribonuclease G [Haemophilus parasuis SH0165] Length = 491 Score = 257 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 140/485 (28%), Positives = 228/485 (47%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E A G++ + A E+ + + A Sbjct: 12 PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V K I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDESEKKQFVVKN------ISELVREGQDIVVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA S ++ + Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERNR--LKSLVEPYCDELGGFIVRTAADSVSEESL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D +L RLW V E A L+Y E L +R +RD I I + + Y + Sbjct: 184 EQDAAFLKRLWRKVLERKGKYPARSLLYGELALAQRVLRDFVGTHIHSIQIDSKMTYEQV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+F+ MP A+ V Y P+F IE + + V L S GY+II QTEA+ + Sbjct: 244 KEFLAEFMPELAKNVSLYSGTLPLFDVYRIEDGIQKALEKRVDLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ + V + Sbjct: 304 IDINTGAFVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRQRVLE 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +LK DR + V + GL+EM+R+R R S+ C+ CKG G I++ +V Sbjct: 364 SLELALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCSSCKGRGTIKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT-IVEYEARFGVSINVVIGIELAD 560 I+R V Y + +V+ V YL+N++ + E E G + + I Sbjct: 424 EIVREVVRVHHLYKSERYVVYASRSVAEYLINEESHALLAELEVFIGKKVEIKIEPYYHQ 483 Query: 561 KLFYI 565 F + Sbjct: 484 DQFDV 488 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETRV ++ + ++E+ E E K+ + GNIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PSETRVALVENGVLKEVHIEREAKRGVVGNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|124266537|ref|YP_001020541.1| ribonuclease G [Methylibium petroleiphilum PM1] gi|124259312|gb|ABM94306.1| ribonuclease G [Methylibium petroleiphilum PM1] Length = 490 Score = 257 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 125/401 (31%), Positives = 206/401 (51%), Gaps = 4/401 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I+ + Q LLVQ++K+ G KGA ++T +S+AGR V +P + + ++ + Sbjct: 87 PIERQVFEGQALLVQVIKDSIGTKGARLSTQISIAGRLLVFLPQDDRIGISQKIGSHELR 146 Query: 229 RKNLKEIARGLEVPAG----MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + P G G ILRT T E+ D YL + W +RE A + + Sbjct: 147 EQLRTRMQALVAPPNGGSSSGGFILRTNAEEATDAELAEDIAYLRKTWTAIRERAFKAPS 206 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 L++ + NL++R +RDL + + Y K+F + MPS + Y P Sbjct: 207 GTLLHLDLNLMQRVLRDLTHDQTHAVRIDSRMQYEALKEFGEQYMPSSVAKLEHYHGERP 266 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF GI+ +++ V L S GY+II+QTEAL +IDVN+G ++T +TNL Sbjct: 267 IFDLFGIDQEIERALARRVDLKSGGYLIIDQTEALTTIDVNTGGYVGARNFDETIFKTNL 326 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA IARQLRLR+L G+I++DFIDM +++ +V +L++ L +DR + V + GL Sbjct: 327 EAALAIARQLRLRNLGGIIIIDFIDMAREEHQNAVLAELRKQLARDRTKTTVSGFTQLGL 386 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R R S+ + C C+G G +++ SV ILR + Q+ V Sbjct: 387 VEMTRKRTRESLAHLLCEPCPTCQGKGQVKTPRSVCYDILREILREARQFNPKEFRVVAS 446 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + VV LL+++ + G +++ L+ + + I Sbjct: 447 AAVVEMLLDEESQHLAGLSDFIGKPVSLQTEPGLSPEAYDI 487 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI+ S +ETRV ++ + V+EL E ++ + GNIY +V RV P +Q+AF+D G Sbjct: 4 ILINWS-PQETRVAIIENGAVQELHLERTLERGLVGNIYAGRVVRVLPGMQSAFIDIGLE 62 Query: 65 RHGFLPFLEIH 75 R FL ++H Sbjct: 63 RAAFLHVADLH 73 >gi|168822734|ref|ZP_02834734.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340928|gb|EDZ27692.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087817|emb|CBY97581.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 489 Score = 257 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 122/413 (29%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V ++R + Sbjct: 374 KTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEVMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V + + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 486 >gi|332701621|ref|ZP_08421709.1| ribonuclease, Rne/Rng family [Desulfovibrio africanus str. Walvis Bay] gi|332551770|gb|EGJ48814.1| ribonuclease, Rne/Rng family [Desulfovibrio africanus str. Walvis Bay] Length = 485 Score = 257 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 159/417 (38%), Positives = 242/417 (58%), Gaps = 4/417 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + K R +Q V+K Q LLVQ+VKE G+KGA +TT Sbjct: 67 AKKNGFLQIDEVHPEYYQGGYQIPKGSRFPPLQSVLKPGQELLVQVVKEPTGSKGAFLTT 126 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSL GRY VL P + ISRKI + +RK LKE+ ++ G+G+I+RT ++ TK Sbjct: 127 YLSLPGRYFVLTPGREQLG-ISRKIEDEEERKRLKELVESMQPGEGLGLIVRTVSSAETK 185 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 + +D +YL RLW +R+ + P L+Y+E L RA+RD D+SEI V ++ Sbjct: 186 TNLDKDVQYLKRLWKEIRKRGTTADTPSLIYQEMELSSRAVRDYLTADVSEIWVDDQETA 245 Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 + + + ++ P +V+ + E +F R + QLD ++ VTLPS G ++ + E Sbjct: 246 TQVTELVSIVFPRRQSMVKVHTEHELSLFDRFNLTRQLDQIYSRTVTLPSGGQIVFDHAE 305 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL +ID+NSGR + +D AL++NLEAAEEIARQLRLRD+ G IVVDFI+M++KK+ + Sbjct: 306 ALTAIDINSGRIGGKKSFKDLALKSNLEAAEEIARQLRLRDIGGQIVVDFIEMKDKKHVK 365 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK ++ ++K DRAR VG IS FGL+E+ RQR+ S + + ++C C+G G R+ Sbjct: 366 EVEKIMRTAIKNDRARTDVGRISRFGLMELVRQRMGVSAVSQSHELCPCCQGYGLRRNME 425 Query: 498 SVALSILRSVEEYLLQYTAHNIIVHT--HSDVVLYLLNQKRATIVEYEARFGVSINV 552 A+ L+ + L + + + ++V +LLN KR I E E +FG + + Sbjct: 426 WQAMQALKEIYRKLRGHKSGEPFEYIAASAEVARHLLNDKRGMIHELEDKFGAIVRI 482 Score = 105 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM I E+ +V+ D +++E E H+ + KGNIY + V+ LQAAF++YG Sbjct: 7 RKMFISVLPGEQIELVLAEDAKIQEYYVELLHQAKTKGNIYKGVIHNVDAGLQAAFINYG 66 Query: 63 GNRHGFLPFLEIHPDY----YQIPFSDR 86 ++GFL E+HP+Y YQIP R Sbjct: 67 AKKNGFLQIDEVHPEYYQGGYQIPKGSR 94 >gi|283836206|ref|ZP_06355947.1| ribonuclease G [Citrobacter youngae ATCC 29220] gi|291067561|gb|EFE05670.1| ribonuclease G [Citrobacter youngae ATCC 29220] Length = 489 Score = 257 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESETERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|157148822|ref|YP_001456141.1| ribonuclease G [Citrobacter koseri ATCC BAA-895] gi|157086027|gb|ABV15705.1| hypothetical protein CKO_04655 [Citrobacter koseri ATCC BAA-895] Length = 489 Score = 257 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKNFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESETERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGHQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|254238862|ref|ZP_04932185.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa C3719] gi|126170793|gb|EAZ56304.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa C3719] Length = 485 Score = 257 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G KGA +TT+LS+ RY V MP TS R Sbjct: 84 ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + K + + G ILRTA + EI D YL RLWD + AP Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ +L R +RDL I +I + + +++ F++ LMP + + Y PIF Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S GY+I++ TEA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+++ + C C+G G +++ + I R + Y A + +V + Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G +I + + + + + Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY +V V P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVWVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHAAEI 73 >gi|238754644|ref|ZP_04615997.1| Ribonuclease G [Yersinia ruckeri ATCC 29473] gi|238707103|gb|EEP99467.1| Ribonuclease G [Yersinia ruckeri ATCC 29473] Length = 437 Score = 257 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 24 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 83 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK G G I+RTA E+ D +L RLW Sbjct: 84 AAHVGVSQRIESEAERER-LKNTVASYCDEQG-GFIIRTAAEGIGAEELSADAAFLKRLW 141 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+ +Y E L +R +RD + I V Y + +F K +P Sbjct: 142 AKVQLRKKRDKTKCKLYGEMALAQRILRDFAGAALDRIRVDSRLTYEQLVEFTKEYIPEM 201 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 202 TNKLEHYSGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 261 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 262 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 321 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G ++S +V ILR + Sbjct: 322 KTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKSVETVCYEILREIVRVHH 381 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L +++ + E E G + V I + + F + Sbjct: 382 AYDSDRFLVYASPSVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 434 >gi|171058629|ref|YP_001790978.1| ribonuclease [Leptothrix cholodnii SP-6] gi|170776074|gb|ACB34213.1| ribonuclease, Rne/Rng family [Leptothrix cholodnii SP-6] Length = 493 Score = 257 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 124/401 (30%), Positives = 209/401 (52%), Gaps = 3/401 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I++++ Q L+VQ++K+ G KGA ++T +S+AGR V +P + ++ + Sbjct: 90 PPIEKLVYEGQSLVVQVIKDPIGTKGARLSTQISVAGRLLVYLPQDEHIGISQKIGSHEL 149 Query: 228 DRKNLKEIARGL---EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + +A + + G G ILRT T E+ D YL + W +R LAL S A Sbjct: 150 REQLRQRMAVLVGTRDSGGGGGFILRTNAEDATDAELAEDIAYLRKAWATMRALALKSAA 209 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 L++E+ NL +R +RDL ++ I + + ++F + MPS ++ Y+ P Sbjct: 210 GTLLHEDLNLAQRVLRDLVNENTQSIRIDSRTQFEALREFGQQFMPSAVGRLQHYKGERP 269 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF I+ +++ V L S GY++++QTEAL +IDVN+G +DT +TNL Sbjct: 270 IFDLFSIDQEIERALARRVDLKSGGYLVVDQTEALTTIDVNTGGFVGARNFDDTIFKTNL 329 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EA + IARQLRLR+L G+I++DFIDM ++ V +L++ L +DR + + + GL Sbjct: 330 EAGQAIARQLRLRNLGGIIIIDFIDMTRPEHQEQVLAELRKQLARDRTKTTISGFTQLGL 389 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R R S+ + C C G G ++ SV ILR + Q+ V Sbjct: 390 VEMTRKRTRESLAHMLCEPCPTCGGRGQTKTARSVCYDILREILREARQFNPKEFRVIAC 449 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + VV LL+++ I G I++ + + + + I Sbjct: 450 AAVVEMLLDEESQHIAGLSDFIGKPISLQVEATMNPEQYDI 490 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV ++ + V+EL E ++ + GN+YL KV RV P +Q+AF+D G Sbjct: 4 ILVNWA-PQETRVAIVENGAVQELHVERTLERGLVGNVYLGKVARVLPGMQSAFIDIGLE 62 Query: 65 RHGFLPFLEIH 75 R FL ++H Sbjct: 63 RAAFLHVADVH 73 >gi|156935764|ref|YP_001439680.1| ribonuclease G [Cronobacter sakazakii ATCC BAA-894] gi|156534018|gb|ABU78844.1| hypothetical protein ESA_03634 [Cronobacter sakazakii ATCC BAA-894] Length = 489 Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK I G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESETERER-LKRIVADYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F MP Sbjct: 194 TKVMERKKRHQTRYQLYGELALAQRVLRDFAVAQLDRIRVDSRLTYEMLLEFTAEYMPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKSDESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|237730162|ref|ZP_04560643.1| ribonuclease G [Citrobacter sp. 30_2] gi|226908768|gb|EEH94686.1| ribonuclease G [Citrobacter sp. 30_2] Length = 489 Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESETERER-LKKVVADYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|288942225|ref|YP_003444465.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180] gi|288897597|gb|ADC63433.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180] Length = 484 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 124/401 (30%), Positives = 214/401 (53%), Gaps = 1/401 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R I E+++ +++VQ+VK+ G KGA +TT +S+A RY V MP S + Sbjct: 81 RGDQIHELVREGDMIVVQVVKDPLGTKGARLTTNISIASRYLVCMPAVSTTGVSQKIEDE 140 Query: 226 PVDRKNLKEIARGLEVPAGM-GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R+ + + R +E G G I RTA + ++ +++D +L +LW ++E + Sbjct: 141 DERRRLREILLRYVEAHQGEGGFIARTAAEAVSEEALEKDMAFLAKLWRGIKERCAHVNQ 200 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 LV+++ L RA+RDL ++ I + +A F +P + Y+ P Sbjct: 201 IGLVHDDLALALRALRDLVTPEVERIRIDSRAMVDKAVSFATKYIPEIQGRIEYYQGERP 260 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F G+E ++ Q +V+L S G+++I+QTEA+ +IDVN+G +E+T +TNL Sbjct: 261 LFDLYGVEEEIRKALQRKVSLKSGGHLVIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNL 320 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA+ I RQLRLR+L G+I++DFIDM E ++ R V + L++ L +D A+ + +S+ GL Sbjct: 321 EAAQAICRQLRLRNLGGIIIIDFIDMTEDEHKRQVLRALEKCLARDHAKTHITEVSSLGL 380 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R R S+ + C C G G I++ + I R + Q+ ++V Sbjct: 381 VEMTRKRTRESLEHVLCEPCPCCGGRGSIKTAETTCYEIFREILRESRQFEVETLLVLAS 440 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +VV LL+++ A + E E G I + + + + Sbjct: 441 QEVVDRLLDEESAHLAELEEFIGRPIRLQAEALYTQEQYDV 481 >gi|317151901|ref|YP_004119949.1| ribonuclease, Rne/Rng family [Desulfovibrio aespoeensis Aspo-2] gi|316942152|gb|ADU61203.1| ribonuclease, Rne/Rng family [Desulfovibrio aespoeensis Aspo-2] Length = 489 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 157/432 (36%), Positives = 236/432 (54%), Gaps = 2/432 (0%) Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 I N Q N + + + + KK R +Q+V+K Q +LVQ+ Sbjct: 54 NIDNGLQAAFINYGAERNGFLQIDEVHPEYYTGSYPMKKGARYPLMQKVLKAGQEVLVQV 113 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 VKE G KGA +TTYLSL GR V + +SRKI N +R LK+ G Sbjct: 114 VKEPTGKKGAFLTTYLSLPGRSFVYTVGRGQMG-VSRKIENEKERDRLKKALESFTTTEG 172 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYC 304 +G+I RTA ++K ++RD++YL RLW+++R A AP +VY+E L RA+RD Sbjct: 173 VGLIARTAAIGQSKAALERDYKYLNRLWEDIRANAQKVKAPAMVYQELGLAARAVRDYLT 232 Query: 305 KDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEV 363 D++EI V + + F+KL P +V+ + + + R + Q+ ++ E Sbjct: 233 LDVTEIWVDDTLTFEQISQFVKLAFPRKNNLVKLHEDTDLSLLERFNLVKQVQEIYSREA 292 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 ++PS G ++ + TEAL +ID+NSG+ E + AL+TNLEAA EIARQLRLRD+ G + Sbjct: 293 SMPSGGRLVFDATEALTAIDINSGKIGGEKNFQKMALKTNLEAATEIARQLRLRDIGGQV 352 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFI+M+ K+ R VEK +K +K DRAR V IS FGL+E+ RQR+ SS + +T+ Sbjct: 353 VIDFIEMKNPKDCREVEKVMKAEMKNDRARTDVSRISPFGLMELVRQRLGSSAIAISTEP 412 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C CKG G R+ A+ L+ + + + ++ +YLLN KR + + E Sbjct: 413 CPCCKGTGIRRNMEWQAMQALKDIHREARKPGQDLVEYTCEEELAIYLLNNKRGVLADLE 472 Query: 544 ARFGVSINVVIG 555 R+G I+V I Sbjct: 473 IRYGKRIHVDIE 484 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 KM I E+ VV+ + +V E E H+ + KG+IY + ++ LQAAF++YG Sbjct: 9 KMFISVLPGEQVEVVIAEEGKVNEYYVEMLHQAKTKGDIYKGYIHNIDNGLQAAFINYGA 68 Query: 64 NRHGFLPFLEIHPDYY 79 R+GFL E+HP+YY Sbjct: 69 ERNGFLQIDEVHPEYY 84 >gi|218893568|ref|YP_002442437.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa LESB58] gi|218773796|emb|CAW29610.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa LESB58] Length = 485 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G KGA +TT+LS+ RY V MP TS R Sbjct: 84 ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEDERE 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + K + + G ILRTA + EI D YL RLWD + AP Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ +L R +RDL I +I + + +++ F++ LMP + + Y PIF Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S GY+I++ TEA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+++ + C C+G G +++ + I R + Y A + +V + Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G +I + + + + + Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY +V RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHAAEI 73 >gi|320106123|ref|YP_004181713.1| ribonuclease, Rne/Rng family [Terriglobus saanensis SP1PR4] gi|319924644|gb|ADV81719.1| ribonuclease, Rne/Rng family [Terriglobus saanensis SP1PR4] Length = 1201 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 243/483 (50%), Gaps = 2/483 (0%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 D E + ++ P + S + + Sbjct: 719 EDTDEPFSEEDGESSEDSDATAPAAANGEGSPRRERSDRGDRGRRDSGRRDRNDRGGDRS 778 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 GG + I +++K Q +LVQI KE KGA +T++++L Sbjct: 779 GARRTGGSGGGGRGGRPRVQASDLPAISDLLKPGQEILVQIAKEPIAKKGARITSHIALP 838 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 GR+ V MP + +SRKI++ +R+ LK I + A G I+RTA ++ E++ Sbjct: 839 GRFLVFMPTVNHTG-VSRKISSDEERRRLKTILLSEKGDATGGFIVRTAADGASEEELRS 897 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 D +L+ LW +++ + +S +P L+Y + NL++R +RD + S I V E Y Sbjct: 898 DLRFLINLWSDIKSRSESSKSPALIYHDLNLVERILRDQVGDNFSAIWVDTEAEYERVLR 957 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 F++ PS R V+ Y P+F + G+ ++D +++V L S G ++INQTEALV+ID Sbjct: 958 FLQRFQPSLIRRVKLYTKETPLFEQFGVTAEIDKALKSKVWLKSGGSIVINQTEALVAID 1017 Query: 384 VNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 VN+G+ + EDT ++TNL+A EI RQ+RLRDL G+IV+DFIDM+++KN V + Sbjct: 1018 VNTGKYVGKTTRLEDTIVKTNLDAIPEIVRQIRLRDLGGIIVIDFIDMDDRKNRNKVMQA 1077 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L + LK DRA +V ++FGL+ ++R+R+R S+ + + CT C G G ++S +VA Sbjct: 1078 LDDELKTDRAPSKVLQFNDFGLVIITRKRVRQSLERTLSTQCTVCTGTGMVKSPITVANE 1137 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 I + + ++++ H +VV L +++ E +I V L+ + Sbjct: 1138 IFIEMRKMYRHMDKGDMMLRVHPEVVKTLKASGSRWLLDMEELTKKTILVKSDPSLSPEQ 1197 Query: 563 FYI 565 F I Sbjct: 1198 FDI 1200 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++ I +S ETR+ ++ ++ + E+ +E E++ + G+IY KVTRV P +Q++FVD Sbjct: 1 MSKEIFI-SSTPHETRLAIVENDALSEIYYERENEYTLAGSIYNGKVTRVLPGMQSSFVD 59 Query: 61 YGGNRHGFLPFLE 73 G R FL + Sbjct: 60 IGLERDAFLYVTD 72 >gi|262273866|ref|ZP_06051679.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Grimontia hollisae CIP 101886] gi|262222281|gb|EEY73593.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Grimontia hollisae CIP 101886] Length = 489 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 130/484 (26%), Positives = 222/484 (45%), Gaps = 8/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+++ + + E A G++ + A ++ + + A Sbjct: 11 PSETRVAMIEAGYLQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDIGLDKAAFLHA 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + I E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 71 SDIVPHTECVAENEKQ------QFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDIT 124 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + LK I G G I+RTA ++ E+ Sbjct: 125 LPSRYLVFMPGASHVGVSQRIESEAERER-LKRIVSEYCDDLG-GFIIRTAAEGASEQEM 182 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D +L RLW+ V E + ++Y E L +R +RD ++ I V Sbjct: 183 AQDAAFLKRLWNKVLERRAKRPSKSMLYGELGLAQRILRDFVGTELDIIRVDSRSAVEAL 242 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 ++F +P + + Y PIF E ++ +V L S GY+II+QTEA+ + Sbjct: 243 REFTDEFVPELSDKIELYTGEQPIFDMYDTENEIQRSLDRKVELKSGGYLIIDQTEAMTT 302 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +D+N+G +E+T TN+EA IARQLRLR+L G+I++DFIDM +++ + V + Sbjct: 303 VDINTGAFVGRRNLEETIFNTNIEATRAIARQLRLRNLGGIIIIDFIDMISEEHRQRVLQ 362 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +L KDR + + + GL+EM+R+R R S+ C C+G G +++ +V Sbjct: 363 SLELALSKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCGECPTCEGRGSVKTVETVCY 422 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +LR + Y A +V+ V L + + E E G + V I + Sbjct: 423 EVLREITRVNRAYDADKFVVYASPSVGEALEGDESHAVAELEVFIGKQVKVHIEPLYTQE 482 Query: 562 LFYI 565 F + Sbjct: 483 QFDV 486 >gi|254244710|ref|ZP_04938032.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 2192] gi|126198088|gb|EAZ62151.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 2192] Length = 485 Score = 256 bits (653), Expect = 9e-66, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G KGA +TT+LS+ RY V MP TS R Sbjct: 84 ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + K + + G ILRTA + EI D YL RLWD + AP Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ +L R +RDL I +I + + +++ F++ LMP + + Y PIF Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S GY+I++ TEA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+++ + C C+G G +++ + I R + Y A + +V + Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G +I + + + + + Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY+ +V RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYMGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHAAEI 73 >gi|317123011|ref|YP_004103014.1| RNAse G [Thermaerobacter marianensis DSM 12885] gi|315592991|gb|ADU52287.1| RNAse G [Thermaerobacter marianensis DSM 12885] Length = 565 Score = 256 bits (653), Expect = 9e-66, Method: Composition-based stats. Identities = 150/527 (28%), Positives = 252/527 (47%), Gaps = 8/527 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+L++ + + E ++ G+V ++ A + E + + Sbjct: 11 PDETRVAVLEDDRLVEIYHERPSNQRVAGNVYKGKVENVLPGMQAAFVNIGLERNAFL-- 68 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 V++ + +D R I +++ Q ++VQIVKE GNKGA VT +L+ Sbjct: 69 ---YVADAVPRGEDAEDDDLPDDLRHAAITDLLHPGQEIIVQIVKEPTGNKGARVTRHLT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GR VLMP R ++ + P G G+I+RTA R++ E+ Sbjct: 126 LPGRLLVLMPGVDYVGVSRRIHDEKERQR--LKQLAQSLQPPGAGLIVRTAAEGRSEAEL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D EYL RLW +++ A AP L+Y + L+ R +RD+ ++ E+ + YR Sbjct: 184 RGDVEYLTRLWADIQRRARRERAPVLLYRDLGLVFRVVRDMLTPEVDEVWIDDPTEYRRM 243 Query: 322 KDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 D M V +F + GI +++ + V L S GY++I+QTEAL Sbjct: 244 LDLMAAFASPLRDRVHLYQNREAGLFEQYGINEEIERALKRRVWLKSGGYLVIDQTEALT 303 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVN+G+ + DT +TN+EAA EIARQLRLRD+ G+IV+DFIDMEE + + V Sbjct: 304 AIDVNTGKFVGSKNLADTVFRTNMEAAAEIARQLRLRDIGGIIVIDFIDMEEPSHRQRVV 363 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++L+ L +D + V I++ GL+EM+R++ R S+LE T+ C YC G G + S+ S A Sbjct: 364 QELERHLARDHTKATVLGITSLGLVEMTRKKGRRSLLEQLTRECPYCDGRGRVLSEESAA 423 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 + R ++ L + I+V H V L+ A + E E G S+ + ++ Sbjct: 424 RRVRREIKRILRHSASEAILVEVHPSVASLLIGAGGANLRELERETGRSVFIRGRDDVHL 483 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 + + + + V + + + + + + + Sbjct: 484 EAMNLVALGSREEVERQALPVHAGQRLELEVEERHATNEADGIARLE 530 >gi|311277792|ref|YP_003940023.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1] gi|308746987|gb|ADO46739.1| ribonuclease, Rne/Rng family [Enterobacter cloacae SCF1] Length = 489 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFAVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESEAERER-LKKVVTDYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V + +F +P Sbjct: 194 TKVMERKKRHQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTFDALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|113866934|ref|YP_725423.1| ribonuclease G and E [Ralstonia eutropha H16] gi|113525710|emb|CAJ92055.1| Ribonuclease G and E [Ralstonia eutropha H16] Length = 488 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 120/411 (29%), Positives = 199/411 (48%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + Q I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 75 HPRDADRNNSTPQLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDP 134 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + G I+RT T E+ D YL ++W Sbjct: 135 HIGISQRIEGEVDREALRSRVQGLVPDDERGGFIVRTIAEEATDEELGNDIAYLRKIWGA 194 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +R+ A AP+L+Y++ NL +R +RD I + + Y+ +F K P+ Sbjct: 195 IRQNATTLPAPNLLYQDLNLAQRVLRDFINDATGVIQIDSRENYQMLLEFAKEYTPAVLP 254 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF I+ +++ V L S GY++I+QTEA+ +IDVN+G Sbjct: 255 RLSHYTGERPIFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +DT +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK +L +DR R+ Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKRALARDRTRI 374 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 V + S GL+EM+R+R R S+ + C C G G +++ + ILR + Q+ Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCHGKGQVKTPRTACYDILREIMRESRQF 434 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L ++ + G I++ + + + I Sbjct: 435 NPREFRILASQEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 485 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 60 IGLERAAFLHVADIWHP 76 >gi|260596136|ref|YP_003208707.1| ribonuclease G [Cronobacter turicensis z3032] gi|260215313|emb|CBA27270.1| Ribonuclease G [Cronobacter turicensis z3032] Length = 489 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK I G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESETERER-LKRIVADYCDEQG-GFIIRTAAEGVCEEDLSSDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F MP Sbjct: 194 TKVMERKKRHQTRYQLYGELALAQRVLRDFAVAQLDRIRVDSRLTYEMLLEFTAEYMPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 NCKLEHYSGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKSDESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|194288981|ref|YP_002004888.1| rnase g, ribonuclease g [Cupriavidus taiwanensis LMG 19424] gi|193222816|emb|CAQ68819.1| RNase G, ribonuclease G [Cupriavidus taiwanensis LMG 19424] Length = 488 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 121/411 (29%), Positives = 201/411 (48%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + Q I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 75 HPRDPDRNNATPQLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDP 134 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + G I+RT T E+ D YL ++W Sbjct: 135 HIGISQRIEGEVDREALRSRVQGLVPADERGGFIVRTIAEEATDEELGNDIAYLRKIWGA 194 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +R+ A AP+L+Y++ NL +R +RD I + + Y+ +F K P+ Sbjct: 195 IRQNATTLPAPNLLYQDLNLAQRVLRDFINDATGVIQIDSRENYQMLLEFAKEYTPAVLP 254 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF I+ +++ V L S GY++I+QTEA+ +IDVN+G Sbjct: 255 RLSHYTGERPIFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +DT +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK +L +DR R+ Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLSELKRALSRDRTRI 374 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 V + S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L ++ + G I++ + + + I Sbjct: 435 NPREFRILASQEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 485 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 60 IGLERAAFLHVADIWHP 76 >gi|254448574|ref|ZP_05062033.1| ribonuclease G [gamma proteobacterium HTCC5015] gi|198261763|gb|EDY86049.1| ribonuclease G [gamma proteobacterium HTCC5015] Length = 491 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 127/420 (30%), Positives = 206/420 (49%), Gaps = 2/420 (0%) Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 +V D+ + + I EV++ Q +LVQ+VKE G KGA +TT +++A RY Sbjct: 69 HVADIVEAHVPAAEGREASRRKIGEVLREGQNILVQVVKEPLGTKGARLTTQITVASRYL 128 Query: 208 VLMPNTSKGETISRKITNPVDRKNL-KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 VLMP ++ + E G I+RT ++ + +D Sbjct: 129 VLMPKDKSIGVSAKIEEESERERLRDLMSGLFPEDSLDFGYIVRTVAEGASEEDFLKDAR 188 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 +L RLW + + + LV+++ L KR +RD+ + I + Y F + Sbjct: 189 FLDRLWKAISQRIDQAGTGELVHQDLPLEKRVLRDMAGVSLDRIRIDSADYYERMVQFSR 248 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 +P ++ Y+ PIF +E ++ +V L S GY+II+QTEA+ +IDVN+ Sbjct: 249 KYVPDVESLLECYKAERPIFDLYAVEDEIQRALNRKVMLKSGGYLIIDQTEAMTTIDVNT 308 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 G +E+T +TNLEAA+ IARQLRLR+L G+I++DFIDM + + R V + L+ + Sbjct: 309 GSFVGHRNLEETTFRTNLEAAQTIARQLRLRNLGGIIILDFIDMVDPDHRRQVLRALERA 368 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 L KD AR V +S GL+EM+R+R R S+ + C C+G+G +++ SV I R Sbjct: 369 LDKDHARTHVCGVSELGLVEMTRKRTRESLEHVLCEPCAACEGSGSVKTAESVCYEIFRE 428 Query: 507 VEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + A ++V H VV L ++ R + E V I + + + Sbjct: 429 ILRLSRTFDAQQQLLVLAHQSVVDLLTDELRDALAELSEEADVPIKFQVETLYHQGQYDV 488 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ S +ETRV VL + ++EL E H + + NIY+ +V RV P ++AAF+D Sbjct: 1 MSEEILINVS-PQETRVGVLENGVLQELYLERSHDRSVVNNIYMGRVERVMPGMEAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHVADI 73 >gi|322834698|ref|YP_004214725.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602] gi|321169899|gb|ADW75598.1| ribonuclease, Rne/Rng family [Rahnella sp. Y9602] Length = 489 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 130/413 (31%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVARDEQKNFHVRDIAELVHQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK I G G I+RTA + E+K+D YL RLW Sbjct: 136 ASHVGVSQRIESEAERDR-LKRIVSEYCDEHG-GYIIRTAAEGVGEEELKQDAAYLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L R +RD + + I V Y +F MP Sbjct: 194 TKVMERKRRNKTKCKLYGELALAHRVLRDFAGEALDRIRVDSRLTYELLVEFTSEYMPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGKQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +EDT TN EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLEDTIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G +++ +V ILR + Sbjct: 374 KTGIHGFSALGLVEMTRKRTRESVEHVLCSDCPTCHARGTVKTVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ + V L ++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASAAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|257092174|ref|YP_003165815.1| Rne/Rng family ribonuclease [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044698|gb|ACV33886.1| ribonuclease, Rne/Rng family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 484 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 212/410 (51%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + I+ ++ Q +LVQ++K+ G+KGA ++T +S+AGR V +P + Sbjct: 72 DIREPRSNDEPLRPIERLLFEGQSILVQVIKDPMGSKGARLSTQVSIAGRMLVYLPQDNH 131 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R +++ R + G I+RT + T+ E+ +D E+L ++W ++ Sbjct: 132 IGISQRIERESEREALREKLHRLVPSDEKGGFIVRTMAENATEAELAKDIEFLRKIWRDI 191 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + + + P L+Y+E +L +R +RD + + I++ + +++ F P+ A + Sbjct: 192 QAQSTTAAPPSLLYQELSLAQRVLRDFVNPETARIVIDSRENFQKLTAFAGEYTPTVAPL 251 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F G+E ++ V L S GY+II+QTEA+ +IDVN+G Sbjct: 252 LEHYIGERPLFDLHGVEDEIQKALARRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGVRNF 311 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G+I++DFIDME +++ +V + ++L +D R+ Sbjct: 312 DDTIFKTNLEAAQTIARQLRLRNLGGIIIIDFIDMENEEHRMAVLSEFNKALARDHTRLT 371 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C G G +R+ +V ILR + Q+ Sbjct: 372 VNGFTALGLVEMTRKRTRESLAHVLCEECPTCGGRGEVRTARTVCYEILRELLREARQFD 431 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A V V+ L+++ + G I++ + + + I Sbjct: 432 AREYRVLGSQAVIDRFLDEESQGLAMLSDFIGKPISLQAEPSYSQEQYDI 481 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +ETRV V V+EL E + GN+Y+ ++ R+ P +Q+AF+D Sbjct: 1 MSEEILINFT-PQETRVAVTHQGVVQELHIERSASRGFVGNVYVGRIVRILPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R FL +I Sbjct: 60 IGLDRTAFLHVADI 73 >gi|261342697|ref|ZP_05970555.1| ribonuclease G [Enterobacter cancerogenus ATCC 35316] gi|288315349|gb|EFC54287.1| ribonuclease G [Enterobacter cancerogenus ATCC 35316] Length = 489 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 122/413 (29%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFAVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA ++ ++ D YL R+W Sbjct: 136 ASHVGVSQRIESESERERLKK--VVSAYCDEQGGFIIRTAAEGISEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 PGLLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPSVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|332532331|ref|ZP_08408211.1| cytoplasmic axial filament protein CafA and ribonuclease G [Pseudoalteromonas haloplanktis ANT/505] gi|332038198|gb|EGI74644.1| cytoplasmic axial filament protein CafA and ribonuclease G [Pseudoalteromonas haloplanktis ANT/505] Length = 490 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 137/484 (28%), Positives = 235/484 (48%), Gaps = 7/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + + G++ + + A F E++ Sbjct: 11 PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +D+V++ V+G K+ I+E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 70 ASDIVNSASIVEGVDD----VPIKKVQDIRELVRQGQYIMVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 + RY V MP+ + R T + K I+RTA ++ E+ Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERSRLKK--IVAEYGDENGSFIVRTAAEGASEAEL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D +L +LW+ + + +++E+ L R +RD +D+ I V + Y E Sbjct: 184 RHDAGFLRKLWEKITSRRRKTSKASILHEDLTLAFRTLRDYVGEDMERIRVDSKLSYEEL 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F + +P ++++ Y PIF +E ++ +VTL S GY+II+QTEA+ + Sbjct: 244 KLFTEEFVPQLSQVLEYYPGERPIFDLFDVENEIQKALHRKVTLKSGGYIIIDQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVN+G +E+T TN+EA IARQLRLR+L G+I++DFIDM + + R V Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSEDHKRRVLH 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +L KDR + + +S GL+EM+R+R R S+ VC C G G ++ +V Sbjct: 364 SLESALAKDRTKTNINGLSALGLVEMTRKRTRESLEHILCDVCPACSGRGSQKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR + Y A +V+ V LLN + + E E G +N+ + + Sbjct: 424 EILREIVRVNRAYAADKFMVYAAPAVSEALLNDEYHNLAELELFIGKQVNIQTESLYSQE 483 Query: 562 LFYI 565 F + Sbjct: 484 QFDV 487 >gi|283788112|ref|YP_003367977.1| ribonuclease G (cytoplasmic axial filament protein) [Citrobacter rodentium ICC168] gi|282951566|emb|CBG91265.1| ribonuclease G (cytoplasmic axial filament protein) [Citrobacter rodentium ICC168] Length = 489 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK + G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESEAERER-LKRVVADYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|50119231|ref|YP_048398.1| ribonuclease G [Pectobacterium atrosepticum SCRI1043] gi|49609757|emb|CAG73191.1| ribonuclease G [Pectobacterium atrosepticum SCRI1043] Length = 489 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K +A G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEVERDRLKKTVAD--YCDDDGGFIIRTAAEGIGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I + Y +F +P Sbjct: 194 GKVMERKKRNQSKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 R + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEEHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ SV I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|303257998|ref|ZP_07344007.1| ribonuclease G [Burkholderiales bacterium 1_1_47] gi|330999411|ref|ZP_08323125.1| ribonuclease G [Parasutterella excrementihominis YIT 11859] gi|302859341|gb|EFL82423.1| ribonuclease G [Burkholderiales bacterium 1_1_47] gi|329574837|gb|EGG56396.1| ribonuclease G [Parasutterella excrementihominis YIT 11859] Length = 486 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 126/414 (30%), Positives = 223/414 (53%), Gaps = 5/414 (1%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 ++ I+ ++ + Q++LVQ+ K+ G KGA +TT +SLAGR V +P TS Sbjct: 71 DMRQAHQENGGTLPIERLLHDGQVVLVQVAKDPIGTKGARLTTEISLAGRLLVYLPYTSH 130 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGM---GVILRTAGASRTKIEIKRDFEYLMRLW 272 +S+KI + +R+ LKE L G+ G I+RT+G + D +YL +LW Sbjct: 131 IG-VSQKIEDEAERERLKEAVAKLTEEQGIPKGGFIVRTSGEDAKPEDFVNDMKYLEKLW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + AP L+Y + ++ +R +RD+ + +IIV + + E + F K +P Sbjct: 190 LDIEAKTHIAGAPCLLYSDVSISQRVLRDIVTEQTGKIIVDNPEVFEELQRFGKKFVPEA 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F + +E ++++ V L S GY+II+QTEA+ +IDVN+G Sbjct: 250 VELLELYNSERPLFDQYNLEKEIEASLSRRVDLKSGGYLIIDQTEAMTTIDVNTGAFVGR 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 DT +TNLEA++ IARQLRLR+L G+I+VDFIDM+ K++ + V +L++++ +DR Sbjct: 310 RDFSDTIYKTNLEASQAIARQLRLRNLGGIIIVDFIDMDSKEHEQGVLTELRKAVARDRN 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+ + ++ GL++++R+R R S+ + + C C G G I++ +V ILR V Sbjct: 370 RISISEFTSLGLVQITRKRTRESLAHTLCETCPTCGGRGEIKTARTVCYEILREVVREYH 429 Query: 513 QYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Q+ A + V+ L+++ + I + + E + + + Sbjct: 430 QFKDAKEFRILASQSVIDLFLDEESEALALVGDSIQKPITLSVETEYNQEQYDV 483 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 4 KMLID-ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+ A H ETRV VL D ++EL E + GNIYL V +V P +Q+AFV+ G Sbjct: 3 EILINNAVH--ETRVAVLEDGVLQELRIERNADVSLIGNIYLGVVGKVLPGMQSAFVEIG 60 Query: 63 GNRHGFLPFLEI 74 R FL ++ Sbjct: 61 LPRAAFLHVSDM 72 >gi|152988375|ref|YP_001350427.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa PA7] gi|150963533|gb|ABR85558.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa PA7] Length = 485 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 216/399 (54%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G KGA +TT+LS+ RY V MP TS R Sbjct: 84 ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + K + + G ILRTA + EI D YL RLWD + + AP Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQSIGAPS 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ +L R +RDL I +I + + +++ F++ LMP + + Y PIF Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S GY+I++ TEA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+++ + C C+G G +++ + I R + Y A + +V + Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G +I + + + + + Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY +V RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHAAEI 73 >gi|15599673|ref|NP_253167.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa PAO1] gi|107099938|ref|ZP_01363856.1| hypothetical protein PaerPA_01000959 [Pseudomonas aeruginosa PACS2] gi|116052509|ref|YP_792822.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296391187|ref|ZP_06880662.1| ribonuclease G [Pseudomonas aeruginosa PAb1] gi|313107063|ref|ZP_07793265.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 39016] gi|9950714|gb|AAG07865.1|AE004861_6 cytoplasmic axial filament protein [Pseudomonas aeruginosa PAO1] gi|115587730|gb|ABJ13745.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa UCBPP-PA14] gi|310879767|gb|EFQ38361.1| cytoplasmic axial filament protein [Pseudomonas aeruginosa 39016] Length = 485 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 215/399 (53%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G KGA +TT+LS+ RY V MP TS R Sbjct: 84 ISALVHEGQALVVQVTKDPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERE 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + K + + G ILRTA + EI D YL RLWD + AP Sbjct: 144 RLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVGAPS 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ +L R +RDL I +I + + +++ F++ LMP + + Y PIF Sbjct: 204 VIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S GY+I++ TEA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+++ + C C+G G +++ + I R + Y A + +V + Sbjct: 384 MTRKRTRESLVQILCEPCPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G +I + + + + + Sbjct: 444 VVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDV 482 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY +V RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHAAEI 73 >gi|283851984|ref|ZP_06369260.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. FW1012B] gi|283572708|gb|EFC20692.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. FW1012B] Length = 486 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 161/418 (38%), Positives = 245/418 (58%), Gaps = 3/418 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + + + IQ+ +K Q LLVQ+VKE G+KGA +TT Sbjct: 69 AERNGFLQIDEVHPEYYQIVHGGDRRPKYPPIQKALKKNQELLVQVVKEPTGHKGAFLTT 128 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSL GRY VL P + +SRKI + +RK LKE GL++ G+G+I+RTA S++K Sbjct: 129 YLSLPGRYFVLTPGREQRG-VSRKIEDEAERKRLKEAIAGLKLEEGLGIIVRTAALSQSK 187 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 ++RD YL RLW +VR+ + P L+Y+E +L RA+RD D+ EI V + Sbjct: 188 TSLERDLSYLKRLWKDVRQRGTTAETPSLIYQELDLSSRAVRDYLTDDVGEIWVDEPETA 247 Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 + L+ P IV+Q+ + P++ R + Q++ L+ EVTLPS G + + TE Sbjct: 248 GRVAEMATLVYPRRPGIVKQHTDMDTPLWDRFNLRKQIEQLYGREVTLPSGGVLAFDHTE 307 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL ++D+NSG+ E + AL+TN+EAAEE+ARQLRLRD+ G +V+DFI+M+++K+ Sbjct: 308 ALTAVDINSGKIGGESNFREMALKTNVEAAEEVARQLRLRDIGGQVVIDFIEMKDRKHVA 367 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK L+ + K DRAR VG +S FGLLE+ RQR+ SS L T++ C +C+G+G R+ Sbjct: 368 EVEKTLRAAFKNDRARTDVGRVSRFGLLEIVRQRLGSSALSITSETCPHCRGSGQRRNHE 427 Query: 498 SVALSILRSVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 AL++L+ + + + + + ++ LYLLN KRA + E F I + Sbjct: 428 WQALTVLKDIYRQMRKDSGLECVTAKVSEELALYLLNSKRARLSALEEEFKKKIVITA 485 Score = 110 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 48/78 (61%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 KM I E+ V V D + E E H+ + +G+IY K+ ++P+LQAAF++YG Sbjct: 10 KMFISVLPGEQVEVAVAEDGLLLEYYVEMVHQAKTRGHIYKGKIHNIDPALQAAFINYGA 69 Query: 64 NRHGFLPFLEIHPDYYQI 81 R+GFL E+HP+YYQI Sbjct: 70 ERNGFLQIDEVHPEYYQI 87 >gi|292490677|ref|YP_003526116.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4] gi|291579272|gb|ADE13729.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4] Length = 490 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 132/398 (33%), Positives = 216/398 (54%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I ++ Q +LVQ++K+ G KGA +TT +S+A RY V MP S + Sbjct: 90 PSITSLLSEGQEVLVQVIKDPIGTKGARLTTQISVASRYLVYMPEMSGIGVSLKIEDEEE 149 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 ++ +A L G I+RT E++ D E+L RLW ++E + A + Sbjct: 150 RQRLKNLLASILLEDDQGGYIIRTVAEGAIADELQTDMEFLHRLWRTIKERSQTVKAGRV 209 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 V+E+ +L+ R +RDL + + + V + Y + DF + +P + Y+ PIF Sbjct: 210 VHEDLSLVMRTMRDLVHERVERVRVDSRETYHKLVDFAEHFVPELLATLEYYQGERPIFD 269 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 GIE ++ +V L S GY+II+QTEA+ +IDVN+G +E+T +TNLEAA Sbjct: 270 LYGIEDEIQKSLGRKVQLKSGGYLIIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNLEAA 329 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + I RQLRLR+L G+I++DFIDMEE+ + R V + L++ L+KD A+ + +S+ GL+EM Sbjct: 330 QAICRQLRLRNLGGIIIIDFIDMEEEDHKRQVLRALEKGLEKDHAKTHISEVSSLGLVEM 389 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + + C C G G +++ +V ILR + Q+ A +V +V Sbjct: 390 TRKRTRESLEQILCETCPTCGGRGTVKTVETVCYEILREILREARQFEASQYLVIAAQEV 449 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V L++++ A++ E EA G I + + F + Sbjct: 450 VDRLMDEESASVAELEAFIGKPIKFQAELLYMREQFDV 487 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV V+ + V+EL E ++ G+IY +V+R+ P +QAAFVD Sbjct: 1 MSEEILINVT-PSETRVAVVENGVVQELYIERSSRRGWVGSIYKGRVSRILPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHASDI 73 >gi|126662499|ref|ZP_01733498.1| Ribonuclease G [Flavobacteria bacterium BAL38] gi|126625878|gb|EAZ96567.1| Ribonuclease G [Flavobacteria bacterium BAL38] Length = 538 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 249/566 (43%), Gaps = 66/566 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHK-KQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I S + +L+D ++ EL E E + G+I++AK+ + L AAFV Sbjct: 23 MNKELII-RSGSDAVDFALLKDGKLIELHKEEEKQSNFAVGDIFIAKIRKPVAGLNAAFV 81 Query: 60 DYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 + G + FL + ++ P + ++ + D+S Sbjct: 82 NLGHEKDAFLHYHDLGP----------------------NLPSLTKFIKLVSAGKIKDYS 119 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 L+ A ++ I+SAN V Sbjct: 120 LKNFPFEAEIDKDGSINDILSANQSV---------------------------------- 145 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 LVQ+VKE KG +++ +SLAGRY VL+P + + + + + + Sbjct: 146 -LVQVVKEPISTKGPRISSEISLAGRYVVLVPFSDRVSVSQKIESREEKDRLKR--LVQS 202 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 P G GVI+RT + E+ +D + L+ W + + P V E N + Sbjct: 203 IKPKGFGVIVRTVAEGKKVAELDKDLQTLLDRWSAMSRRLQTAHHPSKVLGELNKASSIL 262 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH-PIFFRSGIEVQLDSL 358 RD++ + I V E Y E K++++ + P IV+ Y+ P+F + IE Q+ + Sbjct: 263 RDVFNDTFTGIYVDDEDLYLETKEYLQEIAPDKVSIVKHYQSKDLPLFEKYNIERQIKTS 322 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLR 417 V++ Y+II TEAL IDVNSG RS++ E TAL+ N+ AA EIARQLRLR Sbjct: 323 FGKTVSMSKGAYLIIEHTEALHVIDVNSGNRSSKATSQEGTALEVNMIAAAEIARQLRLR 382 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 D+ G+IVVDFIDM+ +N + + L+E + D+A+ ++ S FGL++++RQR+R V Sbjct: 383 DMGGIIVVDFIDMQNPENRKVLYDFLREEMSDDKAKHKILPPSKFGLIQITRQRVRPEVN 442 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 T + + I + + I +E + ++++ H V YL + Sbjct: 443 IKTREEDPNNEHR-EIEAPILIVDKIATDLERII--KDHKKVVLNVHPFVAAYLSKGFPS 499 Query: 538 TIVEYEARFGVSINVVIGIELADKLF 563 ++ + + ++ + Sbjct: 500 LRSKWFFEYKKWVKIIPRDAYTYLEY 525 >gi|325918723|ref|ZP_08180818.1| RNAse G [Xanthomonas vesicatoria ATCC 35937] gi|325535066|gb|EGD06967.1| RNAse G [Xanthomonas vesicatoria ATCC 35937] Length = 499 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 131/392 (33%), Positives = 217/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKIVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWTVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL KD+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRKDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|319787817|ref|YP_004147292.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1] gi|317466329|gb|ADV28061.1| ribonuclease, Rne/Rng family [Pseudoxanthomonas suwonensis 11-1] Length = 495 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 133/397 (33%), Positives = 219/397 (55%), Gaps = 2/397 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P S+ +S +I + +R Sbjct: 97 IVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSRTVGVSARIEDEAER 155 Query: 230 KNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 + LK I L G G I+RT + + D YL R+W+ V + A ++ Sbjct: 156 QRLKTIVSDLAASHGGHGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPAGTII 215 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 YE+ +L R++RDL KD+ ++ V Y + F+ MP A + Y PIF Sbjct: 216 YEDLSLPLRSVRDLIRKDVEKVRVDSRDTYDRLQAFVAKYMPVLAEKLELYSGDRPIFDL 275 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 G+E ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ Sbjct: 276 YGVEDEIGRALDKQVPLKSGGYLVIDQTEAMTTIDVNTGSFLGQRNLEETVYRTNLEAAQ 335 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 +ARQLRLR+L G+I++DFIDM + ++ R V + L++SL +D A+ V S GL+EM+ Sbjct: 336 AVARQLRLRNLGGIIIIDFIDMTDPEHRRQVLRTLEKSLARDHAKTTVYDFSPLGLVEMT 395 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+R S+ ++ C C G G +++ +V I R + + Q+ A ++V VV Sbjct: 396 RKRTVESLERQLSETCPQCGGRGSVKTAETVTYEIFREITRAVRQFEAARLLVIASPKVV 455 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + ++ A + E E G SI + + F + Sbjct: 456 ARITEEESAAVAELEEFLGKSIRFQADEQYLQEQFDV 492 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVVENGMLQELHIERGWRRGVVGNIYKGRVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|149189082|ref|ZP_01867370.1| ribonuclease G [Vibrio shilonii AK1] gi|148837045|gb|EDL53994.1| ribonuclease G [Vibrio shilonii AK1] Length = 489 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + KK + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAENEKKQFQVRDISELVRQGQDIIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEEERNR--LKNVVADYCDENGGFIIRTAAEGANEKELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E +Y E L R +RD +I+ + V + K+F +P Sbjct: 194 TKINERRTKYKTRSTLYGELGLAHRILRDFVGTEITRVQVDSRLIFESLKEFTSEFVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ YE PIF E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 ESLLELYEGDKPIFDMYDTENEIQRSLERKVDLKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ + V L+ +L KDR Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMGLEEHRQRVLNSLEGALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCSGCPTCEGRGSVKTVETVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A + + V L + + E E G + + + F + Sbjct: 434 AYDADKFVAYASPAVAEALEGDESHALAELEVFIGKQVRIQAEPLYIQEQFDV 486 >gi|116623271|ref|YP_825427.1| ribonuclease [Candidatus Solibacter usitatus Ellin6076] gi|116226433|gb|ABJ85142.1| ribonuclease, Rne/Rng family [Candidatus Solibacter usitatus Ellin6076] Length = 913 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 145/494 (29%), Positives = 246/494 (49%), Gaps = 4/494 (0%) Query: 73 EIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132 + P+ +IP S A L+E + P+ L E Sbjct: 422 DEGPEPARIPTS-LTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPR 480 Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 +E + + + + D I +++K Q ++VQI KE G K Sbjct: 481 PQEGRPEQRTSPRPEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQK 540 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GA +T++++L GR+ V MP + ++ + LK I + G I+RTA Sbjct: 541 GARITSHIALPGRFLVYMPTVDHIGVSRKIPSDDERLR-LKRILQTNRTGIPGGYIVRTA 599 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 G RT+ E++ D +L LW ++R+ A AP L++ + N+++R +RD + V Sbjct: 600 GDGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHHDLNVVERILRDQLTSSYKSVWV 659 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 E+ Y F++ P+ V+ Y PIF GI +L+ + +V L S GY++ Sbjct: 660 DNEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIV 719 Query: 373 INQTEALVSIDVNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431 INQTEALV+ID+N+G+ + EDT ++TN +A +EI RQ+RLRDL G+IVVDFIDM+ Sbjct: 720 INQTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMD 779 Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 E+KN + V + L+E+++ DRA ++ ++FGL+ ++R+R++ S+ + C YC+GAG Sbjct: 780 ERKNRQKVMQALEEAMRADRAPYKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAG 839 Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 Y++S +V IL+ + N+++ +V L + + + E E G + Sbjct: 840 YVKSPQTVVGEILQEAHKIARAVD-GNVMLRVAPEVAKLLKSNQNTFLQEVEEILGRPVI 898 Query: 552 VVIGIELADKLFYI 565 V L + F + Sbjct: 899 VKSDPLLHQEKFDL 912 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++I A+ ETRV V+ +++V E+ + E++ + G+I+ +VTRV P +Q+AFVD Sbjct: 1 MSKELIISATR-HETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVD 59 Query: 61 YGGNRHGFLPFLEIHPD---YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIP 115 G R FL + D Y +I S + +LK + A + T +V Sbjct: 60 IGLGRDAFLYVSDFFEDNDEYDKIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGT 117 >gi|317494223|ref|ZP_07952639.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917996|gb|EFV39339.1| rne/Rng family ribonuclease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 489 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 193/413 (46%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIEGEAERNR--LKSIVSEYCDEQGGFIIRTAAEGIDDEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L R +RD + I V + +F + +P Sbjct: 194 TKVMERKRRNKTKCKLYGELALAHRVLRDFAGAALDRIRVDSRLNFDSLTEFTREYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLELYAGKQPIFDLYDVENEIQRSLDRRVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDRA Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSSEDHRRRVLHSLEQALSKDRA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCSDCPTCRGRGTVKTVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L +++ ++ E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKSEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E K+ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIERESKRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|253686661|ref|YP_003015851.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753239|gb|ACT11315.1| ribonuclease, Rne/Rng family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 489 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + Y +F +P Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 R + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN EA + IARQLRLR+L G+I++DFIDM + R V L+++L KDR Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNDDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ SV I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDTDRFLVYASPAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|300991031|ref|ZP_07179452.1| S1 RNA binding domain protein [Escherichia coli MS 45-1] gi|300406952|gb|EFJ90490.1| S1 RNA binding domain protein [Escherichia coli MS 45-1] Length = 489 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGGEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|73542214|ref|YP_296734.1| RNAse G [Ralstonia eutropha JMP134] gi|72119627|gb|AAZ61890.1| RNAse G [Ralstonia eutropha JMP134] Length = 486 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 120/405 (29%), Positives = 200/405 (49%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 P K Q I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 79 PDKNGTQLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDPHIGISQ 138 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 R + + G I+RT + E+ D YL ++W +R+ A Sbjct: 139 RIEGEVDREALRSRVQGLVPADERGGFIVRTIAEEASDEELGNDIAYLRKIWATIRQNAT 198 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 AP L+Y++ +L +R +RD I + + Y+ +F + P+ + Y Sbjct: 199 TQPAPSLLYQDLDLAQRVLRDFINDATGVIQIDSRENYQRLVEFAQEYTPAVLARLSHYT 258 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 PIF I+ +++ V L S GY++I+QTEA+ +IDVN+G +DT Sbjct: 259 GERPIFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIF 318 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +LK +L +DR R+ V S Sbjct: 319 KTNLEAAHTIARQLRLRNLGGIIIIDFIDMENVEHREAVLSELKRALSRDRTRITVNNFS 378 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 379 QLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQFNPREFR 438 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L ++ + G I++ + + + I Sbjct: 439 ILASQEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 483 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 60 IGLERAAFLHVADIWHP 76 >gi|261819621|ref|YP_003257727.1| ribonuclease G [Pectobacterium wasabiae WPP163] gi|261603634|gb|ACX86120.1| ribonuclease, Rne/Rng family [Pectobacterium wasabiae WPP163] Length = 489 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + Y +F +P Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 R + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ SV I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|313902188|ref|ZP_07835596.1| RNAse G [Thermaerobacter subterraneus DSM 13965] gi|313467523|gb|EFR63029.1| RNAse G [Thermaerobacter subterraneus DSM 13965] Length = 566 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 136/443 (30%), Positives = 228/443 (51%), Gaps = 3/443 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R I ++++ Q ++VQI KE G KGA VT +L+L GR VLMP + R Sbjct: 91 RHAAITDILRPGQEIIVQITKEPTGTKGARVTRHLTLPGRLLVLMPGVNYVGVSRRIHDE 150 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ + PAG G+I+RTA R++ E++ D YL RLW ++++ A AP Sbjct: 151 KERQR--LKQLAQELQPAGAGLIVRTAAEGRSEAELRGDVAYLTRLWADIQQRARRQRAP 208 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHP 344 L+Y + L+ R +RD+ ++ ++++ YR D M V+ Sbjct: 209 VLLYRDLGLVFRVVRDMLTPEVDQVLIDDPGEYRRVLDLMAAFATPLRDRVQLYQNREIS 268 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F + G+ +++ + V L S GY++I+QTEAL +IDVN+G+ + DT +TN+ Sbjct: 269 LFEQFGVNEEIERALKRRVWLKSGGYLVIDQTEALTAIDVNTGKFVGSKNLADTVFRTNM 328 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA EIARQLRLRD+ G+IV+DFIDMEE + + V ++L+ L +D + V I+ GL Sbjct: 329 EAAAEIARQLRLRDIGGIIVIDFIDMEEPAHRQRVVQELERHLARDHTKATVLGITALGL 388 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R++ R S+LE T+ C YC+G G + S+ S A + R ++ L + I+V H Sbjct: 389 VEMTRKKGRRSLLEQLTRECPYCEGRGRVLSEESAARRVRREIKRILRHSPSEAILVEVH 448 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 V L+ A + E E G S+ + ++ + ++ + + V + Sbjct: 449 PSVASLLIGAGGANLRELERETGRSVFIRGREDVHLEAMHLVALGSREEVERQALPVHAG 508 Query: 585 SQAPSYDKNIECVWQDEALLPIP 607 + + Q + + + Sbjct: 509 QRLELEVEERHASNQADGIARLE 531 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L+ +ETRV VL D R+ E+ E +++ GNIY +V V P +QAAFV+ Sbjct: 1 MNKSILVTV-EPDETRVAVLEDGRLVEIYHERPSTQRVAGNIYKGRVENVLPGMQAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP 76 G R+ FL + P Sbjct: 60 IGLERNAFLYVADAVP 75 >gi|260912971|ref|ZP_05919456.1| ribonuclease G [Pasteurella dagmatis ATCC 43325] gi|260632961|gb|EEX51127.1| ribonuclease G [Pasteurella dagmatis ATCC 43325] Length = 491 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 128/414 (30%), Positives = 211/414 (50%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 E+ +K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVEESEQKQFVVKDIAELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+ L G G I+RTA T+ E+K+D ++L RLW Sbjct: 137 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAAEGATEDELKQDADFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD + +I + + + E K F + MP+ Sbjct: 195 RKVLERRGKYQTKSMLYGELALTQRILRDFIGAGLEKIRIDSKLCFTEVKQFTEEFMPTL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P+F G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 VDKLVLYSGNQPLFDVYGVETAIHTALNKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ + V + L+E+L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDDHRNRVLESLQEALSKDRV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C+G G I++ ++ I+R + Sbjct: 375 KTSVNGFTQLGLVEMTRKRTRESLEHVLCGDCPSCQGRGRIKTVETICYEIMREIIRVHH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ + E E G I + + + F + Sbjct: 435 LFSSEQFVVYASRAVADYLINEESHGLLAELEVFIGKQIQIKTEVYYNQEQFDV 488 >gi|227327944|ref|ZP_03831968.1| ribonuclease G [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 489 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGVGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + Y +F +P Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAQRILRDFAGAALDRIRIDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 R + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ SV I+R + Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|307129047|ref|YP_003881063.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Dickeya dadantii 3937] gi|306526576|gb|ADM96506.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Dickeya dadantii 3937] Length = 489 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVADYCDEQG-GFIIRTAAEGVGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L R +RD + I V + Y +F +P Sbjct: 194 TKVMERKKRNQTKCKLYGELALAHRILRDFAGASLDRIRVDSKLTYDSLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMGNEEHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCHGRGSVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASPAVGDALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|226227106|ref|YP_002761212.1| ribonuclease G [Gemmatimonas aurantiaca T-27] gi|226090297|dbj|BAH38742.1| ribonuclease G [Gemmatimonas aurantiaca T-27] Length = 520 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 139/398 (34%), Positives = 214/398 (53%), Gaps = 1/398 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 IQ+++K Q +LVQI KE KG VT +SLAGR+ V MP SK + Sbjct: 108 RPIQDLLKRGQEILVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSE 167 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 ++ L+ + + GVI+RT TK +R+ + L+ W ++ + AP L Sbjct: 168 RQR-LRAMVGEMLPDDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSL 226 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 V+ E N+ + +RDL+ + + V ++ Y E ++++ + P V+ YE+ P+F Sbjct: 227 VHRETNVTRGLVRDLFSAKVERVQVDSKQVYNEITEYLQGIAPELVERVKLYEENVPLFD 286 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 + GIE ++ L + LPS GY+I TEALVSIDVNSGR T + E T L+TN EAA Sbjct: 287 KEGIETEIRDLFKRRCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAA 346 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 EIARQLRLRD+ G+IV DFIDME + N V +L+ L +DRAR + A+S+ GL+EM Sbjct: 347 REIARQLRLRDVGGIIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEM 406 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +RQR+R S S T+ C C G G + + ++ R+V + +++ H +V Sbjct: 407 TRQRVRQSHWHSMTEGCPTCSGTGRVFTPETIVRRTERAVRRMAAEGRKEPVVLRLHPEV 466 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L++L Q+ + E G ++ + L + Sbjct: 467 ALHVLEQEHDFMKRLEKMAGFTLELRDDPLLKPDEIKL 504 >gi|294666081|ref|ZP_06731340.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604140|gb|EFF47532.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 499 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|254446552|ref|ZP_05060028.1| ribonuclease, Rne/Rng family [Verrucomicrobiae bacterium DG1235] gi|198260860|gb|EDY85168.1| ribonuclease, Rne/Rng family [Verrucomicrobiae bacterium DG1235] Length = 582 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 126/447 (28%), Positives = 234/447 (52%), Gaps = 14/447 (3%) Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 + ++ +VV KG +P K I +++QI K G K Sbjct: 138 DIQPQEADSSIEVVRVNSSRKGKKQAKIPLKE-----IPNHYPIGTEIVIQITKGPIGTK 192 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 G TT LS+ GR+ VL+P++ + ISRKI + +R+ LK+I R L +P GMG+I+RTA Sbjct: 193 GPRSTTNLSIPGRFIVLVPHSDQCG-ISRKIEDNKERQRLKKIIRDLTIPEGMGIIVRTA 251 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 G + RD L++ W+ +++ ++ AP +Y+E +L +R +RD +DI +++ Sbjct: 252 GEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTEDIDRVLI 311 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 E+ + + + + ++ Y+D PIF R IE Q++ Q +V LPS G ++ Sbjct: 312 DNEEDHGRISETVAQISKRSTSKIQLYQDSIPIFERYNIEKQIEQTFQRQVPLPSGGAIV 371 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 I +TEAL++IDVN+G DT Q N EAAEE+ARQ+RLR++ GLI++DFIDM++ Sbjct: 372 IEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIIIDFIDMKQ 431 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 +++ ++ ++++++ D+A+ + IS G+++M+RQR++ SV C YC+G G Sbjct: 432 RRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCPYCRGKGI 491 Query: 493 IRSQSSVALSILRSVEEYLLQYTAH--------NIIVHTHSDVVLYLLNQKRATIVEYEA 544 ++S ++V++ + R + + + + + + ++ L + ++ E Sbjct: 492 VKSGTTVSVELQRKLSGIIRRARNRTPDLAKPIKLRILVNPAIIDRLREEDADLLISLEK 551 Query: 545 RFGVSINVVIGIELADKLFYIEKGSPV 571 + + + + + Sbjct: 552 DYNAQLTFRADPNFHVENYRVIDVETG 578 >gi|270263284|ref|ZP_06191554.1| hypothetical protein SOD_d03010 [Serratia odorifera 4Rx13] gi|270042972|gb|EFA16066.1| hypothetical protein SOD_d03010 [Serratia odorifera 4Rx13] Length = 489 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 201/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 AAHVGVSQRIESEAERER-LKKAVSAYCDELG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L R +RD + I + + + + +F +P Sbjct: 194 TKVMERKKRNQTKYKLYGELALAHRILRDFAGAALDRIRIDSRQTHDQLVEFTGEYIPDI 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLELYVGKQPIFDLYDVENEVQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM ++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDEHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHVLCHDCPTCNGRGTVKTVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ + V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|227114035|ref|ZP_03827691.1| ribonuclease G [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 489 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVAEYCDDDG-GFIIRTAAEGVGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L R +RD + I + Y +F +P Sbjct: 194 GKVMERKKRNQTKCKLYGEVALAHRILRDFAGAALDRIRIDSRLTYEALLEFTGEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 R + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TRKLEHYAGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDETIFNTNTEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ SV I+R + Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCHECPTCHGRGTVKTVESVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDTDRFLVYASPAVGEALRSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|15602207|ref|NP_245279.1| ribonuclease G [Pasteurella multocida subsp. multocida str. Pm70] gi|12720583|gb|AAK02426.1| CafA [Pasteurella multocida subsp. multocida str. Pm70] Length = 491 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 128/414 (30%), Positives = 210/414 (50%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 E+ +K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVEESEQKQFVVKDIAELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+ L G G I+RTA T+ E+K+D ++L RLW Sbjct: 137 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAADGATEEELKQDADFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD + +I + + + E K F + MP+ Sbjct: 195 RKVLERRAKYPTKSMLYGELALTQRILRDFIGAGLEKIRIDSKLCFTEVKQFTEEFMPTL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P+F G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 VDKLVLYSGNQPLFDVYGVEAAIQTALNKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ + V + L+E+L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDDHRVRVLESLQEALSKDRV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C+G G I++ +V I+R + Sbjct: 375 KTSVNGFTQLGLVEMTRKRTRESLEHVLCGDCPACEGRGRIKTVETVCYEIMREIIRVHH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565 + + +V+ V YL+N++ + E E G + + + + F + Sbjct: 435 LFASEQFVVYASRAVADYLINEESHGLLAELEVFIGKQVQIKTEVYYNQEQFDV 488 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETR+ ++ ++E+ E + K+ I GNIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PSETRIALVDMGILKEVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|15833373|ref|NP_312146.1| ribonuclease G [Escherichia coli O157:H7 str. Sakai] gi|30064578|ref|NP_838749.1| ribonuclease G [Shigella flexneri 2a str. 2457T] gi|56480297|ref|NP_709042.2| ribonuclease G [Shigella flexneri 2a str. 301] gi|89110008|ref|AP_003788.1| ribonuclease G [Escherichia coli str. K-12 substr. W3110] gi|90111563|ref|NP_417713.2| ribonuclease G [Escherichia coli str. K-12 substr. MG1655] gi|110643481|ref|YP_671211.1| ribonuclease G [Escherichia coli 536] gi|117625530|ref|YP_858853.1| ribonuclease G [Escherichia coli APEC O1] gi|157159301|ref|YP_001464719.1| ribonuclease G [Escherichia coli E24377A] gi|157162724|ref|YP_001460042.1| ribonuclease G [Escherichia coli HS] gi|161367512|ref|NP_289814.2| ribonuclease G [Escherichia coli O157:H7 EDL933] gi|161486100|ref|NP_755867.2| ribonuclease G [Escherichia coli CFT073] gi|161950030|ref|YP_404903.2| ribonuclease G [Shigella dysenteriae Sd197] gi|161984856|ref|YP_409471.2| ribonuclease G [Shigella boydii Sb227] gi|161986436|ref|YP_312195.2| ribonuclease G [Shigella sonnei Ss046] gi|162138361|ref|YP_542652.2| ribonuclease G [Escherichia coli UTI89] gi|168752141|ref|ZP_02777163.1| ribonuclease G [Escherichia coli O157:H7 str. EC4113] gi|168754228|ref|ZP_02779235.1| ribonuclease G [Escherichia coli O157:H7 str. EC4401] gi|168763783|ref|ZP_02788790.1| ribonuclease G [Escherichia coli O157:H7 str. EC4501] gi|168769102|ref|ZP_02794109.1| ribonuclease G [Escherichia coli O157:H7 str. EC4486] gi|168777641|ref|ZP_02802648.1| ribonuclease G [Escherichia coli O157:H7 str. EC4196] gi|168781390|ref|ZP_02806397.1| ribonuclease G [Escherichia coli O157:H7 str. EC4076] gi|168786132|ref|ZP_02811139.1| ribonuclease G [Escherichia coli O157:H7 str. EC869] gi|168800958|ref|ZP_02825965.1| ribonuclease G [Escherichia coli O157:H7 str. EC508] gi|170018510|ref|YP_001723464.1| ribonuclease G [Escherichia coli ATCC 8739] gi|170082777|ref|YP_001732097.1| ribonuclease G [Escherichia coli str. K-12 substr. DH10B] gi|170679965|ref|YP_001745518.1| ribonuclease G [Escherichia coli SMS-3-5] gi|187730668|ref|YP_001881637.1| ribonuclease G [Shigella boydii CDC 3083-94] gi|188491981|ref|ZP_02999251.1| ribonuclease G [Escherichia coli 53638] gi|191168164|ref|ZP_03029960.1| ribonuclease G [Escherichia coli B7A] gi|191173813|ref|ZP_03035334.1| ribonuclease G [Escherichia coli F11] gi|193065333|ref|ZP_03046404.1| ribonuclease G [Escherichia coli E22] gi|193070331|ref|ZP_03051274.1| ribonuclease G [Escherichia coli E110019] gi|194429091|ref|ZP_03061621.1| ribonuclease G [Escherichia coli B171] gi|194434884|ref|ZP_03067130.1| ribonuclease G [Shigella dysenteriae 1012] gi|194439213|ref|ZP_03071294.1| ribonuclease G [Escherichia coli 101-1] gi|195939444|ref|ZP_03084826.1| ribonuclease G [Escherichia coli O157:H7 str. EC4024] gi|208805618|ref|ZP_03247955.1| ribonuclease G [Escherichia coli O157:H7 str. EC4206] gi|208812414|ref|ZP_03253743.1| ribonuclease G [Escherichia coli O157:H7 str. EC4045] gi|208818502|ref|ZP_03258822.1| ribonuclease G [Escherichia coli O157:H7 str. EC4042] gi|209396614|ref|YP_002272709.1| ribonuclease G [Escherichia coli O157:H7 str. EC4115] gi|209920717|ref|YP_002294801.1| ribonuclease G [Escherichia coli SE11] gi|215488555|ref|YP_002330986.1| ribonuclease G [Escherichia coli O127:H6 str. E2348/69] gi|217326701|ref|ZP_03442784.1| ribonuclease G [Escherichia coli O157:H7 str. TW14588] gi|218555810|ref|YP_002388723.1| ribonuclease G [Escherichia coli IAI1] gi|218560308|ref|YP_002393221.1| ribonuclease G [Escherichia coli S88] gi|218691528|ref|YP_002399740.1| ribonuclease G [Escherichia coli ED1a] gi|218696945|ref|YP_002404612.1| ribonuclease G [Escherichia coli 55989] gi|218702013|ref|YP_002409642.1| ribonuclease G [Escherichia coli IAI39] gi|218706860|ref|YP_002414379.1| ribonuclease G [Escherichia coli UMN026] gi|227887961|ref|ZP_04005766.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Escherichia coli 83972] gi|238902347|ref|YP_002928143.1| ribonuclease G [Escherichia coli BW2952] gi|253771924|ref|YP_003034755.1| ribonuclease G [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163183|ref|YP_003046291.1| ribonuclease G [Escherichia coli B str. REL606] gi|254795189|ref|YP_003080026.1| ribonuclease G [Escherichia coli O157:H7 str. TW14359] gi|256018840|ref|ZP_05432705.1| ribonuclease G [Shigella sp. D9] gi|256024180|ref|ZP_05438045.1| ribonuclease G [Escherichia sp. 4_1_40B] gi|260846053|ref|YP_003223831.1| ribonuclease G [Escherichia coli O103:H2 str. 12009] gi|260857366|ref|YP_003231257.1| ribonuclease G [Escherichia coli O26:H11 str. 11368] gi|260869990|ref|YP_003236392.1| ribonuclease G [Escherichia coli O111:H- str. 11128] gi|261228251|ref|ZP_05942532.1| RNase G [Escherichia coli O157:H7 str. FRIK2000] gi|261255107|ref|ZP_05947640.1| ribonuclease G [Escherichia coli O157:H7 str. FRIK966] gi|291284614|ref|YP_003501432.1| Ribonuclease G [Escherichia coli O55:H7 str. CB9615] gi|293406849|ref|ZP_06650775.1| ribonuclease G [Escherichia coli FVEC1412] gi|293412614|ref|ZP_06655337.1| ribonuclease [Escherichia coli B354] gi|293416670|ref|ZP_06659309.1| ribonuclease G [Escherichia coli B185] gi|293449571|ref|ZP_06663992.1| ribonuclease G [Escherichia coli B088] gi|297519112|ref|ZP_06937498.1| ribonuclease G [Escherichia coli OP50] gi|298382590|ref|ZP_06992187.1| ribonuclease G [Escherichia coli FVEC1302] gi|300817502|ref|ZP_07097718.1| S1 RNA binding domain protein [Escherichia coli MS 107-1] gi|300824398|ref|ZP_07104512.1| S1 RNA binding domain protein [Escherichia coli MS 119-7] gi|300898014|ref|ZP_07116386.1| S1 RNA binding domain protein [Escherichia coli MS 198-1] gi|300904439|ref|ZP_07122285.1| S1 RNA binding domain protein [Escherichia coli MS 84-1] gi|300917435|ref|ZP_07134100.1| S1 RNA binding domain protein [Escherichia coli MS 115-1] gi|300928720|ref|ZP_07144238.1| S1 RNA binding domain protein [Escherichia coli MS 187-1] gi|300937360|ref|ZP_07152196.1| S1 RNA binding domain protein [Escherichia coli MS 21-1] gi|300948326|ref|ZP_07162435.1| S1 RNA binding domain protein [Escherichia coli MS 116-1] gi|300958276|ref|ZP_07170422.1| S1 RNA binding domain protein [Escherichia coli MS 175-1] gi|300979741|ref|ZP_07174691.1| S1 RNA binding domain protein [Escherichia coli MS 200-1] gi|301022183|ref|ZP_07186100.1| S1 RNA binding domain protein [Escherichia coli MS 69-1] gi|301028271|ref|ZP_07191532.1| S1 RNA binding domain protein [Escherichia coli MS 196-1] gi|301047910|ref|ZP_07194957.1| S1 RNA binding domain protein [Escherichia coli MS 185-1] gi|301304290|ref|ZP_07210404.1| S1 RNA binding domain protein [Escherichia coli MS 124-1] gi|301326317|ref|ZP_07219688.1| S1 RNA binding domain protein [Escherichia coli MS 78-1] gi|301645523|ref|ZP_07245457.1| S1 RNA binding domain protein [Escherichia coli MS 146-1] gi|306816419|ref|ZP_07450551.1| ribonuclease G [Escherichia coli NC101] gi|307139934|ref|ZP_07499290.1| ribonuclease G [Escherichia coli H736] gi|307314995|ref|ZP_07594583.1| ribonuclease, Rne/Rng family [Escherichia coli W] gi|309785572|ref|ZP_07680203.1| ribonuclease G [Shigella dysenteriae 1617] gi|309793823|ref|ZP_07688249.1| S1 RNA binding domain protein [Escherichia coli MS 145-7] gi|312968423|ref|ZP_07782632.1| ribonuclease G [Escherichia coli 2362-75] gi|312972484|ref|ZP_07786658.1| ribonuclease G [Escherichia coli 1827-70] gi|331659526|ref|ZP_08360468.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA206] gi|331664854|ref|ZP_08365759.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA143] gi|331670069|ref|ZP_08370914.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA271] gi|331684887|ref|ZP_08385479.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli H299] gi|71162356|sp|P0A9J2|RNG_ECO57 RecName: Full=Ribonuclease G; Short=RNase G; AltName: Full=Cytoplasmic axial filament protein gi|71162357|sp|P0A9J1|RNG_ECOL6 RecName: Full=Ribonuclease G; Short=RNase G; AltName: Full=Cytoplasmic axial filament protein gi|71162358|sp|P0A9J0|RNG_ECOLI RecName: Full=Ribonuclease G; Short=RNase G; AltName: Full=Cytoplasmic axial filament protein gi|71162359|sp|P0A9J3|RNG_SHIFL RecName: Full=Ribonuclease G; Short=RNase G; AltName: Full=Cytoplasmic axial filament protein gi|48826|emb|CAA40457.1| unnamed protein product [Escherichia coli K-12] gi|13363592|dbj|BAB37542.1| ribonuclease G [Escherichia coli O157:H7 str. Sakai] gi|30042837|gb|AAP18560.1| ribonuclease G [Shigella flexneri 2a str. 2457T] gi|56383848|gb|AAN44749.2| ribonuclease G [Shigella flexneri 2a str. 301] gi|85676039|dbj|BAE77289.1| ribonuclease G [Escherichia coli str. K12 substr. W3110] gi|87082235|gb|AAC76279.2| ribonuclease G [Escherichia coli str. K-12 substr. MG1655] gi|110345073|gb|ABG71310.1| ribonuclease G [Escherichia coli 536] gi|115514654|gb|ABJ02729.1| ribonuclease G [Escherichia coli APEC O1] gi|157068404|gb|ABV07659.1| ribonuclease G [Escherichia coli HS] gi|157081331|gb|ABV21039.1| ribonuclease G [Escherichia coli E24377A] gi|169753438|gb|ACA76137.1| ribonuclease, Rne/Rng family [Escherichia coli ATCC 8739] gi|169890612|gb|ACB04319.1| ribonuclease G [Escherichia coli str. K-12 substr. DH10B] gi|170517683|gb|ACB15861.1| ribonuclease G [Escherichia coli SMS-3-5] gi|187427660|gb|ACD06934.1| ribonuclease G [Shigella boydii CDC 3083-94] gi|187767161|gb|EDU31005.1| ribonuclease G [Escherichia coli O157:H7 str. EC4196] gi|188013944|gb|EDU52066.1| ribonuclease G [Escherichia coli O157:H7 str. EC4113] gi|188487180|gb|EDU62283.1| ribonuclease G [Escherichia coli 53638] gi|189001072|gb|EDU70058.1| ribonuclease G [Escherichia coli O157:H7 str. EC4076] gi|189358640|gb|EDU77059.1| ribonuclease G [Escherichia coli O157:H7 str. EC4401] gi|189361817|gb|EDU80236.1| ribonuclease G [Escherichia coli O157:H7 str. EC4486] gi|189366116|gb|EDU84532.1| ribonuclease G [Escherichia coli O157:H7 str. EC4501] gi|189374163|gb|EDU92579.1| ribonuclease G [Escherichia coli O157:H7 str. EC869] gi|189376860|gb|EDU95276.1| ribonuclease G [Escherichia coli O157:H7 str. EC508] gi|190901772|gb|EDV61525.1| ribonuclease G [Escherichia coli B7A] gi|190905863|gb|EDV65481.1| ribonuclease G [Escherichia coli F11] gi|192926974|gb|EDV81597.1| ribonuclease G [Escherichia coli E22] gi|192956390|gb|EDV86850.1| ribonuclease G [Escherichia coli E110019] gi|194412816|gb|EDX29108.1| ribonuclease G [Escherichia coli B171] gi|194416860|gb|EDX32983.1| ribonuclease G [Shigella dysenteriae 1012] gi|194421909|gb|EDX37915.1| ribonuclease G [Escherichia coli 101-1] gi|208725419|gb|EDZ75020.1| ribonuclease G [Escherichia coli O157:H7 str. EC4206] gi|208733691|gb|EDZ82378.1| ribonuclease G [Escherichia coli O157:H7 str. EC4045] gi|208738625|gb|EDZ86307.1| ribonuclease G [Escherichia coli O157:H7 str. EC4042] gi|209158014|gb|ACI35447.1| ribonuclease G [Escherichia coli O157:H7 str. EC4115] gi|209757668|gb|ACI77146.1| ribonuclease G [Escherichia coli] gi|209757670|gb|ACI77147.1| ribonuclease G [Escherichia coli] gi|209757672|gb|ACI77148.1| ribonuclease G [Escherichia coli] gi|209757674|gb|ACI77149.1| ribonuclease G [Escherichia coli] gi|209757676|gb|ACI77150.1| ribonuclease G [Escherichia coli] gi|209913976|dbj|BAG79050.1| ribonuclease G [Escherichia coli SE11] gi|215266627|emb|CAS11066.1| ribonuclease G [Escherichia coli O127:H6 str. E2348/69] gi|217319068|gb|EEC27493.1| ribonuclease G [Escherichia coli O157:H7 str. TW14588] gi|218353677|emb|CAU99920.1| ribonuclease G [Escherichia coli 55989] gi|218362578|emb|CAR00202.1| ribonuclease G [Escherichia coli IAI1] gi|218367077|emb|CAR04848.1| ribonuclease G [Escherichia coli S88] gi|218371999|emb|CAR19855.1| ribonuclease G [Escherichia coli IAI39] gi|218429092|emb|CAR09899.1| ribonuclease G [Escherichia coli ED1a] gi|218433957|emb|CAR14874.1| ribonuclease G [Escherichia coli UMN026] gi|222034956|emb|CAP77699.1| ribonuclease G [Escherichia coli LF82] gi|227835357|gb|EEJ45823.1| bifunctional ribonuclease G/cytoplasmic axial filament protein [Escherichia coli 83972] gi|238863468|gb|ACR65466.1| ribonuclease G [Escherichia coli BW2952] gi|253322968|gb|ACT27570.1| ribonuclease, Rne/Rng family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975084|gb|ACT40755.1| ribonuclease G [Escherichia coli B str. REL606] gi|253979240|gb|ACT44910.1| ribonuclease G [Escherichia coli BL21(DE3)] gi|254594589|gb|ACT73950.1| RNase G [Escherichia coli O157:H7 str. TW14359] gi|257756015|dbj|BAI27517.1| ribonuclease G [Escherichia coli O26:H11 str. 11368] gi|257761200|dbj|BAI32697.1| ribonuclease G [Escherichia coli O103:H2 str. 12009] gi|257766346|dbj|BAI37841.1| ribonuclease G [Escherichia coli O111:H- str. 11128] gi|260447726|gb|ACX38148.1| ribonuclease, Rne/Rng family [Escherichia coli DH1] gi|281180280|dbj|BAI56610.1| ribonuclease G [Escherichia coli SE15] gi|281602624|gb|ADA75608.1| Ribonuclease G [Shigella flexneri 2002017] gi|290764487|gb|ADD58448.1| Ribonuclease G [Escherichia coli O55:H7 str. CB9615] gi|291322661|gb|EFE62090.1| ribonuclease G [Escherichia coli B088] gi|291426855|gb|EFE99887.1| ribonuclease G [Escherichia coli FVEC1412] gi|291432026|gb|EFF05009.1| ribonuclease G [Escherichia coli B185] gi|291469385|gb|EFF11876.1| ribonuclease [Escherichia coli B354] gi|294493247|gb|ADE92003.1| ribonuclease G [Escherichia coli IHE3034] gi|298277730|gb|EFI19246.1| ribonuclease G [Escherichia coli FVEC1302] gi|299878648|gb|EFI86859.1| S1 RNA binding domain protein [Escherichia coli MS 196-1] gi|300300253|gb|EFJ56638.1| S1 RNA binding domain protein [Escherichia coli MS 185-1] gi|300307959|gb|EFJ62479.1| S1 RNA binding domain protein [Escherichia coli MS 200-1] gi|300315063|gb|EFJ64847.1| S1 RNA binding domain protein [Escherichia coli MS 175-1] gi|300358264|gb|EFJ74134.1| S1 RNA binding domain protein [Escherichia coli MS 198-1] gi|300397650|gb|EFJ81188.1| S1 RNA binding domain protein [Escherichia coli MS 69-1] gi|300403601|gb|EFJ87139.1| S1 RNA binding domain protein [Escherichia coli MS 84-1] gi|300415345|gb|EFJ98655.1| S1 RNA binding domain protein [Escherichia coli MS 115-1] gi|300452139|gb|EFK15759.1| S1 RNA binding domain protein [Escherichia coli MS 116-1] gi|300457579|gb|EFK21072.1| S1 RNA binding domain protein [Escherichia coli MS 21-1] gi|300463309|gb|EFK26802.1| S1 RNA binding domain protein [Escherichia coli MS 187-1] gi|300523127|gb|EFK44196.1| S1 RNA binding domain protein [Escherichia coli MS 119-7] gi|300529800|gb|EFK50862.1| S1 RNA binding domain protein [Escherichia coli MS 107-1] gi|300840416|gb|EFK68176.1| S1 RNA binding domain protein [Escherichia coli MS 124-1] gi|300846983|gb|EFK74743.1| S1 RNA binding domain protein [Escherichia coli MS 78-1] gi|301076207|gb|EFK91013.1| S1 RNA binding domain protein [Escherichia coli MS 146-1] gi|305849984|gb|EFM50443.1| ribonuclease G [Escherichia coli NC101] gi|306905578|gb|EFN36110.1| ribonuclease, Rne/Rng family [Escherichia coli W] gi|307555332|gb|ADN48107.1| ribonuclease G [Escherichia coli ABU 83972] gi|307625161|gb|ADN69465.1| ribonuclease G [Escherichia coli UM146] gi|308122780|gb|EFO60042.1| S1 RNA binding domain protein [Escherichia coli MS 145-7] gi|308926692|gb|EFP72168.1| ribonuclease G [Shigella dysenteriae 1617] gi|309703667|emb|CBJ03008.1| ribonuclease g [Escherichia coli ETEC H10407] gi|310334861|gb|EFQ01066.1| ribonuclease G [Escherichia coli 1827-70] gi|312286641|gb|EFR14552.1| ribonuclease G [Escherichia coli 2362-75] gi|312947796|gb|ADR28623.1| ribonuclease G [Escherichia coli O83:H1 str. NRG 857C] gi|313648511|gb|EFS12953.1| ribonuclease G [Shigella flexneri 2a str. 2457T] gi|313848765|emb|CAQ33574.2| ribonuclease G (RNAse G) monomer, subunit of ribonuclease G (RNAse G) [Escherichia coli BL21(DE3)] gi|315062546|gb|ADT76873.1| ribonuclease G [Escherichia coli W] gi|315137831|dbj|BAJ44990.1| ribonuclease G [Escherichia coli DH1] gi|315257171|gb|EFU37139.1| S1 RNA binding domain protein [Escherichia coli MS 85-1] gi|315289058|gb|EFU48456.1| S1 RNA binding domain protein [Escherichia coli MS 110-3] gi|315294786|gb|EFU54129.1| S1 RNA binding domain protein [Escherichia coli MS 153-1] gi|315300897|gb|EFU60117.1| S1 RNA binding domain protein [Escherichia coli MS 16-3] gi|320175957|gb|EFW51033.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Shigella dysenteriae CDC 74-1112] gi|320181516|gb|EFW56434.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Shigella boydii ATCC 9905] gi|320184033|gb|EFW58855.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Shigella flexneri CDC 796-83] gi|320189593|gb|EFW64252.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Escherichia coli O157:H7 str. EC1212] gi|320194723|gb|EFW69353.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Escherichia coli WV_060327] gi|320202156|gb|EFW76731.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Escherichia coli EC4100B] gi|320640038|gb|EFX09619.1| ribonuclease G [Escherichia coli O157:H7 str. G5101] gi|320645608|gb|EFX14617.1| ribonuclease G [Escherichia coli O157:H- str. 493-89] gi|320650918|gb|EFX19375.1| ribonuclease G [Escherichia coli O157:H- str. H 2687] gi|320656299|gb|EFX24211.1| ribonuclease G [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661989|gb|EFX29397.1| ribonuclease G [Escherichia coli O55:H7 str. USDA 5905] gi|320666823|gb|EFX33802.1| ribonuclease G [Escherichia coli O157:H7 str. LSU-61] gi|323154456|gb|EFZ40657.1| ribonuclease G [Escherichia coli EPECa14] gi|323162933|gb|EFZ48768.1| ribonuclease G [Escherichia coli E128010] gi|323165209|gb|EFZ50999.1| ribonuclease G [Shigella sonnei 53G] gi|323173496|gb|EFZ59125.1| ribonuclease G [Escherichia coli LT-68] gi|323183007|gb|EFZ68406.1| ribonuclease G [Escherichia coli 1357] gi|323189141|gb|EFZ74425.1| ribonuclease G [Escherichia coli RN587/1] gi|323376866|gb|ADX49134.1| ribonuclease, Rne/Rng family [Escherichia coli KO11] gi|323936269|gb|EGB32561.1| rne/Rng family protein ribonuclease [Escherichia coli E1520] gi|323941660|gb|EGB37839.1| rne/Rng family protein ribonuclease [Escherichia coli E482] gi|323946906|gb|EGB42922.1| rne/Rng family protein ribonuclease [Escherichia coli H120] gi|323951242|gb|EGB47117.1| rne/Rng family protein ribonuclease [Escherichia coli H252] gi|323957613|gb|EGB53327.1| rne/Rng family protein ribonuclease [Escherichia coli H263] gi|323961105|gb|EGB56719.1| rne/Rng family protein ribonuclease [Escherichia coli H489] gi|323966425|gb|EGB61859.1| rne/Rng family protein ribonuclease [Escherichia coli M863] gi|323970338|gb|EGB65608.1| rne/Rng family protein ribonuclease [Escherichia coli TA007] gi|323979043|gb|EGB74121.1| rne/Rng family protein ribonuclease [Escherichia coli TW10509] gi|324009063|gb|EGB78282.1| S1 RNA binding domain protein [Escherichia coli MS 57-2] gi|324015841|gb|EGB85060.1| S1 RNA binding domain protein [Escherichia coli MS 60-1] gi|324020756|gb|EGB89975.1| S1 RNA binding domain protein [Escherichia coli MS 117-3] gi|324119427|gb|EGC13310.1| rne/Rng family protein ribonuclease [Escherichia coli E1167] gi|326337941|gb|EGD61775.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Escherichia coli O157:H7 str. 1125] gi|326347510|gb|EGD71235.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Escherichia coli O157:H7 str. 1044] gi|327251339|gb|EGE63028.1| ribonuclease G [Escherichia coli STEC_7v] gi|330909290|gb|EGH37804.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Escherichia coli AA86] gi|331054108|gb|EGI26137.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA206] gi|331058102|gb|EGI30084.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA143] gi|331062982|gb|EGI34896.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA271] gi|331078502|gb|EGI49708.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli H299] gi|332090924|gb|EGI96015.1| ribonuclease G [Shigella boydii 3594-74] gi|332345202|gb|AEE58536.1| ribonuclease G [Escherichia coli UMNK88] gi|332752409|gb|EGJ82799.1| ribonuclease G [Shigella flexneri 4343-70] gi|332752450|gb|EGJ82839.1| ribonuclease G [Shigella flexneri K-671] gi|332754468|gb|EGJ84834.1| ribonuclease G [Shigella flexneri 2747-71] gi|332765246|gb|EGJ95473.1| ribonuclease G [Shigella flexneri 2930-71] gi|332998367|gb|EGK17966.1| ribonuclease G [Shigella flexneri VA-6] gi|333000404|gb|EGK19987.1| ribonuclease G [Shigella flexneri K-218] gi|333014522|gb|EGK33869.1| ribonuclease G [Shigella flexneri K-304] Length = 489 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|237706007|ref|ZP_04536488.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226899047|gb|EEH85306.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] Length = 495 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 82 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 141 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 142 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 199 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 200 TKVMERKQRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 259 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 260 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 319 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 320 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 379 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 380 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 439 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 440 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 492 >gi|110807108|ref|YP_690628.1| ribonuclease G [Shigella flexneri 5 str. 8401] gi|110616656|gb|ABF05323.1| bundles of cytoplasmic filaments [Shigella flexneri 5 str. 8401] Length = 489 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + + +V+ V L ++ ++ E E G + V I + F + Sbjct: 434 AYDSDSFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|58427532|gb|AAW76569.1| ribonuclease G [Xanthomonas oryzae pv. oryzae KACC10331] Length = 500 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 107 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 165 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 166 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 225 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 226 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 285 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 286 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 345 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 346 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 405 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 406 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 465 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 466 EESAAVAELEEFLGKSILFQSDDQYLQEQFDV 497 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 2 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 60 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 61 VGLERAAFLHANDV 74 >gi|332087238|gb|EGI92371.1| ribonuclease G [Shigella boydii 5216-82] Length = 489 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|284923262|emb|CBG36356.1| ribonuclease G (cytoplasmic axial filament protein) [Escherichia coli 042] Length = 485 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 72 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 131 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 132 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 189 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 190 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 249 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 250 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 309 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 310 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 369 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 370 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 429 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 430 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 482 >gi|170765797|ref|ZP_02900608.1| ribonuclease G [Escherichia albertii TW07627] gi|170124943|gb|EDS93874.1| ribonuclease G [Escherichia albertii TW07627] Length = 489 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVTEYCDEQG-GFIIRTAAEGVGETELASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|84624787|ref|YP_452159.1| ribonuclease G [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879251|ref|YP_201954.6| ribonuclease G [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577773|ref|YP_001914702.1| ribonuclease G [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368727|dbj|BAE69885.1| ribonuclease G [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522225|gb|ACD60170.1| ribonuclease G [Xanthomonas oryzae pv. oryzae PXO99A] Length = 499 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSILFQSDDQYLQEQFDV 496 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|51246860|ref|YP_066744.1| RNAse E [Desulfotalea psychrophila LSv54] gi|50877897|emb|CAG37737.1| probable RNAse E [Desulfotalea psychrophila LSv54] Length = 883 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 174/496 (35%), Positives = 267/496 (53%), Gaps = 3/496 (0%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS- 140 P R ALL++ + V T ++ ++E A T + + Sbjct: 388 PEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGTVKNGFLPF 447 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 + D+ + ++V ++ R+ I++V+ Q LLVQ+VKEE G KGA +TTYL Sbjct: 448 SEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKKGANMTTYL 507 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SL GR VLMP S ISRKI R L++ R L +P G G I+RTA + Sbjct: 508 SLPGRCVVLMPG-SDSAGISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTASVDINEEA 566 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 + RD YL++LW++VRE L+YE+ + R +R+ Y I EI+V + Sbjct: 567 LARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILVDAPLALEQ 626 Query: 321 AKDFMKLLMPSYARIV-RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +F+ +L + + R ++ PIF + +E Q++S++Q +V+LPS G ++I+ TEAL Sbjct: 627 VNEFVSMLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSIVIDPTEAL 686 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 V+IDVNSG +++ +++ Q N+EAA E ARQLRLRDL GL+VVDFIDM KK+ +V Sbjct: 687 VAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMRNKKHINAV 746 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EK++K ++K+D+A+V IS FGL+++SRQ++ S + +VC +CKG G +R+ ++ Sbjct: 747 EKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRGIVRAVETL 806 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 AL LR ++ + I H DV YLLN KR I E E V I +V+ Sbjct: 807 ALFYLRRIQTGASRKPVVKIECHFPLDVASYLLNNKRQEITEMENNNEVEIMIVVESRFK 866 Query: 560 DKLFYIEKGSPVQALV 575 I + Sbjct: 867 PAENEIVFHRAEKEKE 882 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 31/144 (21%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + K S+ + + + V P+ E + ES Sbjct: 187 RKKRATRPARPVAKASSEEAKVASEPAKKAVEAKSGEKPVQDVEKAPVSSAESPAPESEV 246 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +KR RRR R S + + + E + G Sbjct: 247 APKKRPARRRSRSNKKTSARPETDSVAEKAPMDPAPVSEKAVAAEASSGEEKDEKASKGP 306 Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710 E + D Sbjct: 307 NRRRSRRPRKRRPATDEQEAVAKD 330 >gi|157372640|ref|YP_001480629.1| ribonuclease G [Serratia proteamaculans 568] gi|157324404|gb|ABV43501.1| ribonuclease, Rne/Rng family [Serratia proteamaculans 568] Length = 489 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 200/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G G I+RTA + E+ +D +L RLW Sbjct: 136 AAHVGVSQRIESEAERDR-LKKAVAGYCDELG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I V + +F +P Sbjct: 194 TKVMERKKRNQTKYKLYGELALAQRILRDFAGAALDRIRVDSRLTHDLLVEFTGEYIPDI 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TAKLELYTGSQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM ++ R V L+ +L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDEHRRRVLHSLELALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHVLCHDCPTCHGRGTLKTVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ + V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|94309723|ref|YP_582933.1| RNAse G [Cupriavidus metallidurans CH34] gi|93353575|gb|ABF07664.1| ribonuclease G [Cupriavidus metallidurans CH34] Length = 510 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 117/401 (29%), Positives = 195/401 (48%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P R Sbjct: 107 NGHLAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDPHIGISQRIEG 166 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + G I+RT + E+ D YL ++W +R A A Sbjct: 167 EIDREALRARVQGLVPTDERGGFIVRTIAEEASDEELGNDIAYLRKIWATIRSNATTLPA 226 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+Y++ NL +R +RD I + + Y++ +F + P+ + Y P Sbjct: 227 PSLLYQDLNLAQRVLRDFINDATGVIQIDSRENYQKLVEFAQEYTPAVLPRLSHYTGERP 286 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF I+ +++ V L S GY++I+QTEA+ +IDVN+G +DT +TNL Sbjct: 287 IFDLFNIDAEIEKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNL 346 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA IARQLRLR+L G+I++DFIDME ++ +V +LK +L +DR R+ V S GL Sbjct: 347 EAAHTIARQLRLRNLGGIIIIDFIDMENVEHRDAVLSELKRALSRDRTRITVNGFSQLGL 406 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R R S+ + C C G G +++ +V I R + Q+ + Sbjct: 407 VEMTRKRTRESLAHVLCEQCPVCTGKGQVKTPRTVCYDIFREIMRESRQFNPREFRILAS 466 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V+ L ++ + G I++ + + + I Sbjct: 467 QEVIDLFLEEESQHLAMLGDFIGKPISLQVESTFHQEQYDI 507 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 26 MTEDILVNIT-PQETRVAIVQQAAVQELHVERTLTRGLVGNIYLGKVVRVLPGMQSAFID 84 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 85 VGLERAAFLHVADIWHP 101 >gi|83647992|ref|YP_436427.1| ribonucleases G and E [Hahella chejuensis KCTC 2396] gi|83636035|gb|ABC32002.1| Ribonucleases G and E [Hahella chejuensis KCTC 2396] Length = 494 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 130/416 (31%), Positives = 215/416 (51%), Gaps = 7/416 (1%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 +P + + I +++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP+ + Sbjct: 77 NPGEDRNGGNKHPDISSLLREGQSLVVQVTKDPIGAKGARLTTQLSIPSRYLVYMPDNNH 136 Query: 216 GETISRKITNPVDRKNLKEIAR------GLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 R + + LKE+ + G G I+RTA E+K D +L Sbjct: 137 IGISQRIEDDAERDR-LKELIQLCVTTEDANSADGAGFIIRTAAEGVGSEELKSDILFLQ 195 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 +LW ++RE +S AP +YE+ L R +RDL +I + + + +A F+ + Sbjct: 196 KLWLSLREKIKSSPAPGPIYEDLPLYIRTLRDLVRPYTEKIRIDSRESFHKALKFVDEFV 255 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 + Y PIF +E +L +V L S GY+II+QTEA+ +IDVN+G Sbjct: 256 SEIRNKLEYYPGERPIFDLYSVEDELQKALSRKVQLKSGGYLIIDQTEAMTTIDVNTGAF 315 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 +E+T +TNLEAA IARQLRLR+L G+I++DFIDME++++ R V + L++ L++ Sbjct: 316 VGHRNLEETIFKTNLEAARAIARQLRLRNLGGIIIIDFIDMEDEEHKRQVLRMLEKMLER 375 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 D A+ ++ +S GL+EM+R+R S+ + + C C G G +++ +V I R + Sbjct: 376 DHAKTKISCVSELGLVEMTRKRTTESLGQMLCEPCPACDGRGTVKTAQTVCYEIFREILR 435 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V VV LL+++ ++ + E G I + + + F + Sbjct: 436 INRTYDAQGYLVLAAQAVVDLLLDEQSDSVADLETFIGKRIRFQVEVMYTQEQFDV 491 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV V+ + ++E+ E ++ I GNIY KV RV P ++AAF+D Sbjct: 1 MSEEILINVT-PVETRVAVVENGMLQEVYIERSQRRGIVGNIYKGKVIRVLPGMEAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ ++ Sbjct: 60 IGLERAAFIHASDV 73 >gi|77361593|ref|YP_341168.1| ribonuclease G [Pseudoalteromonas haloplanktis TAC125] gi|76876504|emb|CAI87726.1| RNase G (ribonuclease G) [Pseudoalteromonas haloplanktis TAC125] Length = 490 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 141/484 (29%), Positives = 241/484 (49%), Gaps = 7/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + + G++ + + A F E++ Sbjct: 11 PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +D+V++ V+G K+ I+E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 70 ASDIVNSASIVEGVDD----TPIKKVQDIRELVRQGQYIMVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 + RY V MP+ + R T + LK+I G I+RTA ++ E+ Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERGR-LKKIVAEYSDENG-SFIVRTAAEGASEAEL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D +L +LW V + +++E+ L R +RD +D+ I V + Y+E Sbjct: 184 RHDAAFLQKLWQKVVSRRKKTSKASILHEDLTLAFRTLRDYVGEDMERIRVDSKLTYQEL 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F + +P ++++ Y PIF +E ++ +VTL S GY+II+QTEA+ + Sbjct: 244 KLFTEEFVPILSQVLEYYPGERPIFDLFDVENEIQKALHRKVTLKSGGYLIIDQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVN+G +E+T TN+EA IARQLRLR+L G+I++DFIDM + + R V Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSEDHKRRVMH 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +L KDRA+ + +S GL+EM+R+R R S+ VC C G G ++ +V Sbjct: 364 SLESALAKDRAKANINGLSALGLVEMTRKRTRESLEHILCDVCPACSGRGSQKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +LR + Y A +V+ V LLN + + E E G +N+ + + + Sbjct: 424 ELLREIVRVNRAYDADKFVVYAAPAVCEALLNDEYHNLAELELFIGKQVNIQVESLYSQE 483 Query: 562 LFYI 565 F + Sbjct: 484 QFDV 487 >gi|325294283|ref|YP_004280797.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064731|gb|ADY72738.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 508 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 160/486 (32%), Positives = 273/486 (56%), Gaps = 2/486 (0%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 R A+L+E + + E + G++ + A +++ + Sbjct: 25 KEVRIAVLEEGELVEFYVERKGNRGIVGNIYKGRVVKIVPAVQAAFVDIGISKKAFLYVK 84 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 + V E+ + E + I+EV+ Q +LVQ+ KE G KG +TT +++ Sbjct: 85 DAVTVEFEEEEDLFEETTQPQEIELPPIEEVLSEGQEVLVQVSKEPIGTKGPRITTNITV 144 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 G Y VL+P +K ISR+IT+ +R+ LK+IA ++ G+I+RTA TK ++K Sbjct: 145 PGHYLVLLPTVNKIG-ISRRITDEAERERLKKIAEDIKPE-DYGIIVRTAAEGATKEDLK 202 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 +D EY++R+W + E A N P L+Y++ ++ + +RDL +++SE+I+ + + A Sbjct: 203 KDLEYILRVWKGLLEKAENRPPPSLLYQDLEIVPKTLRDLLTEEVSEVIIDSKAEFERAL 262 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 F K +P A ++ Y P+F R +E ++ +V LP+ GY++I++TEALVSI Sbjct: 263 SFAKAFIPKLAGRIKYYSKDIPLFQRFEVEKAIEKTLSRKVYLPNGGYIVIDETEALVSI 322 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSG+ + +E+TAL+ NL AA+EIARQLRLRD+ G+IV+DFIDM+E++N + + K Sbjct: 323 DVNSGKFKKTKTLEETALRINLVAAKEIARQLRLRDIGGIIVIDFIDMKEEENKQLLLKT 382 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L+E L KDRA+ ++ ++S+ GL+EM+R+R++ S+ +S T C YC+G G ++S +VA Sbjct: 383 LEEELSKDRAKTKIVSMSDLGLVEMTRKRVKKSLGKSLTMTCPYCEGKGRVKSIETVAFE 442 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 I R + L + I V+ + V L ++ I + E + I V+ + Sbjct: 443 IEREILSLLKTNNSKVIKVYANPLVAEKLKGDEKDIIDKIEEVYEKKIKVIPVEYYHIEK 502 Query: 563 FYIEKG 568 F + +G Sbjct: 503 FTVVRG 508 Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+A H +E R+ VL + + E E + + I GNIY +V ++ P++QAAFVD G Sbjct: 16 KQILINA-HTKEVRIAVLEEGELVEFYVERKGNRGIVGNIYKGRVVKIVPAVQAAFVDIG 74 Query: 63 GNRHGFLPFLE 73 ++ FL + Sbjct: 75 ISKKAFLYVKD 85 >gi|289663229|ref|ZP_06484810.1| ribonuclease G [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 499 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLEAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|315617057|gb|EFU97667.1| ribonuclease G [Escherichia coli 3431] gi|332086476|gb|EGI91623.1| ribonuclease G [Shigella dysenteriae 155-74] Length = 474 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 61 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 120 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 121 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 178 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 179 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 238 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 239 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 298 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 299 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 358 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 359 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 418 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 419 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 471 >gi|332288468|ref|YP_004419320.1| ribonuclease G [Gallibacterium anatis UMN179] gi|330431364|gb|AEC16423.1| ribonuclease G [Gallibacterium anatis UMN179] Length = 494 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 124/414 (29%), Positives = 211/414 (50%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 80 HTECVDENEQKQFVVKDIAELVREGQDIIVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 139 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA + + E+K+D ++L RLW Sbjct: 140 NSHVGVSQRIESEEERAR--LKELVTPFCDELGGFIIRTAAENVSLEELKQDEDFLKRLW 197 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + S AP ++Y E L +R IRD I I + + + E K+F++ +P Sbjct: 198 RKVLERKVRSTAPAMLYTEPALAQRIIRDFVGMTIDSIRIDSKLVFLEVKEFIEEFLPHL 257 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P P+F +E + V L S GY+II QTEA+ +ID+N+G Sbjct: 258 THTLSVYTGPQPLFDLYNVEDSIQKALNKRVNLKSGGYLIIEQTEAMTTIDINTGGFVGH 317 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L+++L KDR Sbjct: 318 RNLEETIFNTNIEATQAIAQQLQLRNLGGIIIIDFIDMQIIEHQERVLQSLRDALAKDRV 377 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ + C C G G+++S ++ I R + Sbjct: 378 KTTVNGFTQLGLVEMTRKRTRESLEHVLCEECPNCHGRGHVKSVETICYEIAREIIRVHH 437 Query: 513 QYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELADKLFYI 565 Y++ +V+ V +L+N++ A + E E G + + + + F + Sbjct: 438 LYSSEQFLVYASRAVAEHLINEETHALLAEVEVFIGKKVQIKMEPYYTQEQFDV 491 >gi|271498846|ref|YP_003331871.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586] gi|270342401|gb|ACZ75166.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech586] Length = 489 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVADYCDEQG-GFIIRTAAEGVGEEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L R +RD + I V + Y +F +P Sbjct: 194 TKVMERKKRNQTKCKLYGELALAHRILRDFAGASLDRIRVDSKLTYDSLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMANEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V I+R V Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCHGRGSVKTVETVCYEIMREVVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|21232040|ref|NP_637957.1| ribonuclease G [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767833|ref|YP_242595.1| ribonuclease G [Xanthomonas campestris pv. campestris str. 8004] gi|188990949|ref|YP_001902959.1| ribonuclease G [Xanthomonas campestris pv. campestris str. B100] gi|21113780|gb|AAM41881.1| ribonuclease G [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573165|gb|AAY48575.1| ribonuclease G [Xanthomonas campestris pv. campestris str. 8004] gi|167732709|emb|CAP50903.1| ribonuclease G [Xanthomonas campestris pv. campestris] Length = 499 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 132/392 (33%), Positives = 219/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + A ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREASACSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL KD+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRKDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALDKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|261344918|ref|ZP_05972562.1| ribonuclease G [Providencia rustigianii DSM 4541] gi|282567058|gb|EFB72593.1| ribonuclease G [Providencia rustigianii DSM 4541] Length = 489 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 132/413 (31%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E++K Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK G G I+RTA + ++K+D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKACVAQYCDENG-GFIIRTAAEGVAEDDVKQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +V +Y E +L R IRD + I V Y E K+F+ +P Sbjct: 194 AKVIERKKRNVTRTKIYGELSLAYRIIRDFAGASLDRIRVDSRLTYSELKEFIAEYVPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y+ PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V L+++L KD+ Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMIDVEHRRRVLASLEQALSKDKV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ VV L + + E E G + V I + + F + Sbjct: 434 TIDADRFLVYASQAVVDVLTGDESHALAEVEIFVGKQVKVQIEPLYSQERFDV 486 >gi|242277641|ref|YP_002989770.1| ribonuclease, Rne/Rng family [Desulfovibrio salexigens DSM 2638] gi|242120535|gb|ACS78231.1| ribonuclease, Rne/Rng family [Desulfovibrio salexigens DSM 2638] Length = 490 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 160/404 (39%), Positives = 245/404 (60%), Gaps = 3/404 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + KK R +Q+V+K Q + VQ+VKE G KGA +++YLS+ GRY VL P Sbjct: 84 EYYQGAYKLKKGHRYPLLQKVLKPGQEIFVQVVKEPTGKKGAFLSSYLSIPGRYFVLTPG 143 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + ISRKI + +R+ LKE+ + AG+GVI+RTA ++K ++RDF++L RLW Sbjct: 144 REQIG-ISRKIEDEKERERLKELIDEVNPGAGVGVIVRTASKGQSKSALRRDFKFLTRLW 202 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 +++RE ++ P LVYEE L RA+RD D+ EI V ++ + K L P Sbjct: 203 NDIREKGQDAKPPSLVYEEMGLAARAVRDYLSSDVVEIWVDDQETLEQVKKLATLSFPRR 262 Query: 333 ARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + +V+ + + ++ R + Q++ ++ EV LPS G ++ +QTEAL +ID+NSG+ Sbjct: 263 SNLVKLHSDTDKSLWERFNLVKQIEQIYGREVNLPSGGRLVFDQTEALTAIDINSGKIGG 322 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 E ++ AL+TN E+AE IARQL+LRDL G +V+DFI+M++ K+ R VEK ++ +LK DR Sbjct: 323 ERNFKEMALKTNKESAEMIARQLKLRDLGGQVVIDFIEMKDPKHCREVEKTMRAALKGDR 382 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR VG IS FGL+E+ RQR+ SS + +T+ C C G G R+ A+ ++ + L Sbjct: 383 ARTDVGRISRFGLMELVRQRLGSSAIAVSTEACPCCDGTGIRRNMEWQAMQAIKDIYRML 442 Query: 512 LQYTAHNIIVHTH-SDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + + +V+ ++ LYLLN KR I +YE FG IN+ I Sbjct: 443 RRPNCESPLVYDAEEELALYLLNHKRDAISQYEKMFGTKINIEI 486 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 46/76 (60%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 M I E+ V + ++ +V E E H+ + KGNIY + ++ +LQAAF++YG Sbjct: 12 MFISVLPGEQVEVALTQEGQVIEYYVEMLHQAKTKGNIYKGYIHNIDAALQAAFINYGAE 71 Query: 65 RHGFLPFLEIHPDYYQ 80 R+GFL E+HP+YYQ Sbjct: 72 RNGFLQVDEVHPEYYQ 87 >gi|254038406|ref|ZP_04872464.1| ribonuclease G [Escherichia sp. 1_1_43] gi|331643945|ref|ZP_08345076.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli H736] gi|331649038|ref|ZP_08350126.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli M605] gi|331654844|ref|ZP_08355844.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli M718] gi|331674763|ref|ZP_08375522.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA280] gi|331679320|ref|ZP_08379992.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli H591] gi|332279925|ref|ZP_08392338.1| ribonuclease G [Shigella sp. D9] gi|25496493|pir||B85989 bundles of cytoplasmic filaments [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517870|gb|AAG58374.1|AE005552_4 bundles of cytoplasmic filaments [Escherichia coli O157:H7 str. EDL933] gi|26110255|gb|AAN82441.1|AE016767_201 Ribonuclease G [Escherichia coli CFT073] gi|606187|gb|AAA58050.1| ORF_f495; orfF of ECMRED, uses 2nd start [Escherichia coli str. K-12 substr. MG1655] gi|73857253|gb|AAZ89960.1| bundles of cytoplasmic filaments [Shigella sonnei Ss046] gi|81242702|gb|ABB63412.1| bundles of cytoplasmic filaments [Shigella dysenteriae Sd197] gi|81246935|gb|ABB67643.1| bundles of cytoplasmic filaments [Shigella boydii Sb227] gi|91074240|gb|ABE09121.1| ribonuclease G [Escherichia coli UTI89] gi|226840030|gb|EEH72051.1| ribonuclease G [Escherichia sp. 1_1_43] gi|331037416|gb|EGI09640.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli H736] gi|331042785|gb|EGI14927.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli M605] gi|331048226|gb|EGI20303.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli M718] gi|331068202|gb|EGI39598.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli TA280] gi|331073385|gb|EGI44708.1| ribonuclease G (RNase G) (Cytoplasmic axial filamentprotein) [Escherichia coli H591] gi|332102277|gb|EGJ05623.1| ribonuclease G [Shigella sp. D9] Length = 495 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 82 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 141 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 142 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 199 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 200 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 259 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 260 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 319 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 320 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 379 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 380 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 439 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 440 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 492 >gi|21109057|gb|AAM37615.1| ribonuclease G [Xanthomonas axonopodis pv. citri str. 306] Length = 500 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 107 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 165 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 166 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 225 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 226 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 285 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 286 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 345 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 346 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 405 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 406 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 465 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 466 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 497 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 2 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 60 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 61 VGLERAAFLHANDV 74 >gi|258516458|ref|YP_003192680.1| ribonuclease, Rne/Rng family [Desulfotomaculum acetoxidans DSM 771] gi|257780163|gb|ACV64057.1| ribonuclease, Rne/Rng family [Desulfotomaculum acetoxidans DSM 771] Length = 564 Score = 254 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 123/397 (30%), Positives = 215/397 (54%), Gaps = 3/397 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I +V+K Q L+VQIVKE G KG +TT+++L GRY VLMP R Sbjct: 91 NIGDVLKQGQDLVVQIVKEPIGTKGPRITTHITLPGRYLVLMPTVDYIGISRRIADEQER 150 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 + + P MG+I+RT ++ E+ +D L +LW + + + P+L+ Sbjct: 151 ER--LKELAARVKPRDMGLIVRTVAEGVSEEELAQDVNVLAKLWRKIINRSNHGPVPNLL 208 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 + + L+ R +RD++ +D+ +I+ Y + + ++ +I ++ +F Sbjct: 209 HRDLELVHRILRDIFTEDVDRLIIDSRYEYERVLELL-DIIDPQLKIKVSVDERENLFEE 267 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 GIE++L+ + +V L GY++I+Q EAL +IDVN+G+ +EDT L+TNL+AA Sbjct: 268 YGIEMELEKAVKRKVWLKCGGYLVIDQAEALTAIDVNTGKFVGSTNLEDTVLRTNLDAAL 327 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 EIARQLRLR++ G+I+VDFIDM E ++ + V + L++ +KKD+ + + I+ GL+EM+ Sbjct: 328 EIARQLRLRNIGGIIIVDFIDMLEDEHRQKVLEVLEKEIKKDKTKTNLLGITQLGLVEMT 387 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+++R S+ E K C YC+G G + S+ +V + + + Q A I+V + V Sbjct: 388 RKKVRPSLSEMLQKPCPYCEGRGKVLSEETVGIYFKNEIYQLSRQTPADTILVEANPLVA 447 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L+ + + + E + G ++ + + I Sbjct: 448 ARLIGSGGSNLRDLENKTGKNLYIRGSANYHIESVKI 484 Score = 115 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++ EETRV VL D E+ E ++++GNI+ KV V P +QAAFVD Sbjct: 1 MLKEIVVNVGE-EETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLE 73 G +++ FL + Sbjct: 60 IGLDKNAFLYVED 72 >gi|220935439|ref|YP_002514338.1| ribonuclease G [Thioalkalivibrio sp. HL-EbGR7] gi|219996749|gb|ACL73351.1| ribonuclease G [Thioalkalivibrio sp. HL-EbGR7] Length = 493 Score = 254 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 122/398 (30%), Positives = 217/398 (54%), Gaps = 1/398 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 IQ++++ Q +LVQ++K+ G KGA +TTY+++ RY VLMPN +R Sbjct: 93 PIQKLLREGQDVLVQVIKDPIGTKGARLTTYITVPSRYLVLMPNNPTIGVSTRIEDEAER 152 Query: 229 RKNLKEIARGL-EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + + L + G G I+RTA + ++ ++ D ++L +LW ++ E Sbjct: 153 ARLKGFMESVLADKSEGHGFIVRTAADAASEEAMRNDVDFLHKLWHSISERVKQVPPGSE 212 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 VY + L R +RD+ ++ +I + + ++ +F + +P + Y PIF Sbjct: 213 VYTDLPLTLRILRDMVGVELEKIRIDSRETVQKVTEFAESYVPELLGRIEHYPGERPIFD 272 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 +E ++ + +V L S GY+I +QTEA+ +ID+N+G +E+T +TNLEAA Sbjct: 273 LYNVEDEIQKALERKVELKSGGYLIFDQTEAMTTIDINTGAFVGHRNLEETIFKTNLEAA 332 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + IARQLRLR+L G+I++DFIDM + ++ R V + L+++L+KD A+ Q+ +S GL+EM Sbjct: 333 QAIARQLRLRNLGGIIIIDFIDMTQDEHKRQVFRALEKALEKDHAKSQLCEVSPLGLVEM 392 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + C C G GY++S +V + R + Q+ A ++V V Sbjct: 393 TRKRTRESLERILCEPCVTCSGRGYLKSAETVCYEMFREIMREARQFDAKELLVMASQTV 452 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V LL+++ A++ + + G+ I + + F + Sbjct: 453 VDLLLDEESASVAQLQEFIGIPIRFQVESLYTQEQFDV 490 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + +ETRV ++ + + EL+ E ++ + GNIY +V+RV P + AAFVD Sbjct: 2 MGTEILMNVT-PQETRVALVENGVLVELNMERARRRGLVGNIYKGRVSRVLPGMDAAFVD 60 Query: 61 YGGNRHGFLPFLEIHP 76 G R FL ++ P Sbjct: 61 IGLERAAFLHASDVAP 76 >gi|258544824|ref|ZP_05705058.1| ribonuclease G [Cardiobacterium hominis ATCC 15826] gi|258519929|gb|EEV88788.1| ribonuclease G [Cardiobacterium hominis ATCC 15826] Length = 487 Score = 254 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 115/397 (28%), Positives = 208/397 (52%), Gaps = 2/397 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I +V++ Q LLVQ++K+ G+KGA +T +S+ R+ V +P + +S KI + R Sbjct: 89 ISDVLREGQSLLVQVLKDPIGSKGARLTMEISIPSRFLVFLPTADEIG-VSIKIASEEQR 147 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L+E G G I+RTA S ++ D +YL R+W+ + + + L+Y Sbjct: 148 QTLREAVAGFHQGRQGGFIVRTAIESADVWAMRADMQYLQRVWEAIVQQQRGARPGSLIY 207 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV-RQYEDPHPIFFR 348 E L ++ +RD + ++V +RE + F + + Y +F R Sbjct: 208 GELPLYQKVLRDFVSPGVRRVVVDHPGAHREMQAFAANFLVGMEQTRLEFYSGDRSLFER 267 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 GIE ++ + V L S GY+II+QTEA+ +IDVN+G + +DT +TNLEAA Sbjct: 268 YGIEEEISLALKRHVALKSGGYLIIDQTEAMTTIDVNTGAFVGKLSQDDTIYKTNLEAAR 327 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 IARQLRLR+L G+I++DFIDM + ++ + V L +L DR++ + IS G++EM+ Sbjct: 328 AIARQLRLRNLGGIIMLDFIDMNDPEHQQGVMDALLTALAGDRSKYTISPISPLGIIEMT 387 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+R R S+ + + C C+G GY+++ ++ + R + ++ + + +++ Sbjct: 388 RKRTRESLRQLMCEPCPCCQGRGYVKTVETITYELFRDLMREARDFSPKTMTIVAGLELI 447 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ ++ T + +A + I + + + I Sbjct: 448 DFIREEESLTFSDLQALLKIPIRLQVDSAYRHGQYDI 484 >gi|268590762|ref|ZP_06124983.1| ribonuclease G [Providencia rettgeri DSM 1131] gi|291313537|gb|EFE53990.1| ribonuclease G [Providencia rettgeri DSM 1131] Length = 489 Score = 254 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 131/413 (31%), Positives = 202/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E++K Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE G G I+RTA + E+K+D +L RLW Sbjct: 136 ASHVGVSQRIESEDERER-LKECVSQYCDENG-GFIIRTAAEGVGEEEVKQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +V +Y E L R IRD + I V Y + ++F++ +P Sbjct: 194 AKVIERKKRNVTRTKIYGELALAYRIIRDFAGAHLDRIRVDSRLTYTQLQEFIEEYVPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y+ PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V L+++L KD+ Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMADPEHRRRVLASLEQALSKDKV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ VV L + + E E G + V + + F + Sbjct: 434 TIDADRFLVYASQAVVDVLKGDESHALAEVEIFVGKQVKVQTEPLYSQERFDV 486 >gi|77748673|ref|NP_643079.2| ribonuclease G [Xanthomonas axonopodis pv. citri str. 306] Length = 499 Score = 254 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|323178584|gb|EFZ64160.1| ribonuclease G [Escherichia coli 1180] Length = 437 Score = 254 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 24 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 83 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 84 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 141 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 142 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 201 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 202 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 261 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 262 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 321 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 322 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 381 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 382 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 434 >gi|170717718|ref|YP_001783500.1| ribonuclease G [Haemophilus somnus 2336] gi|168825847|gb|ACA31218.1| ribonuclease, Rne/Rng family [Haemophilus somnus 2336] Length = 492 Score = 254 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 124/414 (29%), Positives = 208/414 (50%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + +K I +++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 78 HTECVDVDEQKQFVVKDIAQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 137 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+ L G G I+RTA T+ E+ +D E+L RLW Sbjct: 138 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAAEGATETELVQDAEFLKRLW 195 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD + S+I + + + E K F + MP Sbjct: 196 RKVLERRAKYTTRSMLYGELALTQRILRDFIGANFSKIHIDSKLCFSEVKQFTEEFMPEL 255 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P+F +E + + + V L S GY+II QTE++ +ID+N+G Sbjct: 256 TDKLVLYSGSQPLFDVYSVENAIQTALNSRVNLKSGGYLIIEQTESMTTIDINTGAFVGH 315 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ +++ V + L+ +L KDR Sbjct: 316 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTEEHRDRVLESLRLALSKDRV 375 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 376 KTNVNGFTQLGLVEMTRKRTRESLEHILCDECPTCSGRGSVKTVETVCYEIMREIIRVNH 435 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565 + + +V+ V YL+N++ + E E G I + + + + F + Sbjct: 436 LFASEKFVVYASRAVADYLINEESHGLLAELEVFIGKQIQIKTEVYYSQEQFDV 489 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 1 MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M + ++L + + ETR+ ++ + ++E+ E + K+ GNIY +VTRV P +Q+AFV Sbjct: 2 MESVELLANIT-PSETRIALVDNGILKEVHIERQAKRGSVGNIYKGRVTRVLPGMQSAFV 60 Query: 60 DYGGNRHGFLPFLEIHP 76 D G + FL +I Sbjct: 61 DIGLEKAAFLHASDIVS 77 >gi|119470454|ref|ZP_01613182.1| ribonuclease G [Alteromonadales bacterium TW-7] gi|119446379|gb|EAW27655.1| ribonuclease G [Alteromonadales bacterium TW-7] Length = 490 Score = 254 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 240/484 (49%), Gaps = 7/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + + G++ + + A F E++ Sbjct: 11 PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +D+V++ V+G K+ I+E+++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 70 ASDIVNSASIVEGVDD----VPIKKVQDIRELVRQGQYIMVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 + RY V MP+ + R T + LK+I G I+RTA ++ E+ Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERSR-LKKIVAEYGDENG-SFIVRTAAEGASEAEL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D +L +LW+ + + +++E+ L R +RD +D+ I V + Y+E Sbjct: 184 RHDAGFLRKLWEKITARRKKTSKATILHEDLTLAFRTLRDYVGEDMERIRVDSKLTYQEL 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F + +P ++++ Y PIF +E ++ +VTL S GY+II+QTEA+ + Sbjct: 244 KIFTEEFVPQLSQVLEYYPGERPIFDLFDVENEVQKALHRKVTLKSGGYIIIDQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVN+G +E+T TN+EA IARQLRLR+L G+I++DFIDM +++ V Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSEEHKSRVLH 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +L KDR + + +S GL+EM+R+R R S+ VC C G G ++ +V Sbjct: 364 SLESALAKDRTKTNINGLSALGLVEMTRKRTRESLEHILCDVCPACSGRGSQKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR + Y A +V+ V LLN + + E E G +++ + + Sbjct: 424 EILREIVRVNRAYAADKFMVYAAPAVSEALLNDEYHNLAELELFIGKQVHIQTESLYSQE 483 Query: 562 LFYI 565 F + Sbjct: 484 QFDV 487 >gi|22124116|ref|NP_667539.1| ribonuclease G [Yersinia pestis KIM 10] gi|45443606|ref|NP_995145.1| ribonuclease G [Yersinia pestis biovar Microtus str. 91001] gi|51597852|ref|YP_072043.1| ribonuclease G [Yersinia pseudotuberculosis IP 32953] gi|108809673|ref|YP_653589.1| ribonuclease G [Yersinia pestis Antiqua] gi|108813662|ref|YP_649429.1| ribonuclease G [Yersinia pestis Nepal516] gi|145597592|ref|YP_001161668.1| ribonuclease G [Yersinia pestis Pestoides F] gi|153949561|ref|YP_001399395.1| ribonuclease G [Yersinia pseudotuberculosis IP 31758] gi|153997392|ref|ZP_02022492.1| ribonuclease G [Yersinia pestis CA88-4125] gi|162419477|ref|YP_001605736.1| ribonuclease G [Yersinia pestis Angola] gi|165927569|ref|ZP_02223401.1| ribonuclease G [Yersinia pestis biovar Orientalis str. F1991016] gi|165937500|ref|ZP_02226063.1| ribonuclease G [Yersinia pestis biovar Orientalis str. IP275] gi|166011413|ref|ZP_02232311.1| ribonuclease G [Yersinia pestis biovar Antiqua str. E1979001] gi|166214165|ref|ZP_02240200.1| ribonuclease G [Yersinia pestis biovar Antiqua str. B42003004] gi|167402019|ref|ZP_02307502.1| ribonuclease G [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420718|ref|ZP_02312471.1| ribonuclease G [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425585|ref|ZP_02317338.1| ribonuclease G [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466827|ref|ZP_02331531.1| ribonuclease G [Yersinia pestis FV-1] gi|170022720|ref|YP_001719225.1| ribonuclease G [Yersinia pseudotuberculosis YPIII] gi|186897046|ref|YP_001874158.1| ribonuclease G [Yersinia pseudotuberculosis PB1/+] gi|218930680|ref|YP_002348555.1| ribonuclease G [Yersinia pestis CO92] gi|229836817|ref|ZP_04456982.1| RNase G [Yersinia pestis Pestoides A] gi|229839284|ref|ZP_04459443.1| RNase G [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899847|ref|ZP_04514988.1| RNase G [Yersinia pestis biovar Orientalis str. India 195] gi|229904158|ref|ZP_04519269.1| RNase G [Yersinia pestis Nepal516] gi|270488601|ref|ZP_06205675.1| S1 RNA binding domain protein [Yersinia pestis KIM D27] gi|294505262|ref|YP_003569324.1| ribonuclease G [Yersinia pestis Z176003] gi|21956869|gb|AAM83790.1|AE013620_1 cytoplasmic filament protein [Yersinia pestis KIM 10] gi|45438476|gb|AAS64022.1| ribonuclease G [Yersinia pestis biovar Microtus str. 91001] gi|51591134|emb|CAH22799.1| ribonuclease G [Yersinia pseudotuberculosis IP 32953] gi|108777310|gb|ABG19829.1| RNAse G [Yersinia pestis Nepal516] gi|108781586|gb|ABG15644.1| RNAse G [Yersinia pestis Antiqua] gi|115349291|emb|CAL22258.1| ribonuclease G [Yersinia pestis CO92] gi|145209288|gb|ABP38695.1| RNAse G [Yersinia pestis Pestoides F] gi|149289029|gb|EDM39109.1| ribonuclease G [Yersinia pestis CA88-4125] gi|152961056|gb|ABS48517.1| ribonuclease G [Yersinia pseudotuberculosis IP 31758] gi|162352292|gb|ABX86240.1| ribonuclease G [Yersinia pestis Angola] gi|165914605|gb|EDR33219.1| ribonuclease G [Yersinia pestis biovar Orientalis str. IP275] gi|165920463|gb|EDR37740.1| ribonuclease G [Yersinia pestis biovar Orientalis str. F1991016] gi|165989797|gb|EDR42098.1| ribonuclease G [Yersinia pestis biovar Antiqua str. E1979001] gi|166204652|gb|EDR49132.1| ribonuclease G [Yersinia pestis biovar Antiqua str. B42003004] gi|166961524|gb|EDR57545.1| ribonuclease G [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048605|gb|EDR60013.1| ribonuclease G [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055599|gb|EDR65392.1| ribonuclease G [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749254|gb|ACA66772.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis YPIII] gi|186700072|gb|ACC90701.1| ribonuclease, Rne/Rng family [Yersinia pseudotuberculosis PB1/+] gi|229678276|gb|EEO74381.1| RNase G [Yersinia pestis Nepal516] gi|229687339|gb|EEO79414.1| RNase G [Yersinia pestis biovar Orientalis str. India 195] gi|229695650|gb|EEO85697.1| RNase G [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705760|gb|EEO91769.1| RNase G [Yersinia pestis Pestoides A] gi|262363325|gb|ACY60046.1| ribonuclease G [Yersinia pestis D106004] gi|262367297|gb|ACY63854.1| ribonuclease G [Yersinia pestis D182038] gi|270337105|gb|EFA47882.1| S1 RNA binding domain protein [Yersinia pestis KIM D27] gi|294355721|gb|ADE66062.1| ribonuclease G [Yersinia pestis Z176003] gi|320017164|gb|ADW00736.1| RNase G [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 489 Score = 254 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 76 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F + +P Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTREYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TDKLELYTGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLR+R+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESIEHVLCHECPTCRGRGTVKSVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|332163143|ref|YP_004299720.1| ribonuclease G [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667373|gb|ADZ44017.1| ribonuclease G [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862856|emb|CBX72997.1| ribonuclease G [Yersinia enterocolitica W22703] Length = 489 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 204/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 76 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F + +P Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDFLVEFTREYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TEKLELYAGKQPIFDLYDVENEIQRSLERKVDLKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALTKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|225873291|ref|YP_002754750.1| ribonuclease, Rne/Rng family, insertion [Acidobacterium capsulatum ATCC 51196] gi|225794327|gb|ACO34417.1| ribonuclease, Rne/Rng family, insertion [Acidobacterium capsulatum ATCC 51196] Length = 1013 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 148/484 (30%), Positives = 244/484 (50%), Gaps = 2/484 (0%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 SD + D + A+ D A ++ + Sbjct: 530 VSDGEEEDAAEEEDDEDEQGFAEVSEDFDEDAAESEEESGEPRAAAPARREGRKFDRRRG 589 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 GG + I +++K Q +LVQI KE KGA +T++++L Sbjct: 590 RQGGGRQRHGGGGGHRRASVQTMDLPIISDLLKQGQEILVQIAKEPIAKKGARITSHIAL 649 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 GR+ V MP + +SRKI++ +R+ LK I + A G I+RTA + E++ Sbjct: 650 PGRFLVFMPTVNHVG-VSRKISSDEERQRLKRILISEKGDATGGFIVRTAAEGAGEDELR 708 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 D +L+ LW+ ++E + + AP L+Y + NL++R +RD ++ S I V E Y Sbjct: 709 ADIRFLINLWNEIKERSDSGKAPALIYHDLNLVERILRDQVSEEFSTIWVDSETDYERIV 768 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 F+ PS R V+ Y P+F + GI+ ++ +++V L S G ++INQTEALV+I Sbjct: 769 RFLNRFQPSLVRRVKLYTKEMPLFEQFGIQDEITKALKSKVWLKSGGSIVINQTEALVAI 828 Query: 383 DVNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 D+N+G+ + EDT ++TNL+A EI RQ+RLRDL G+IV+DFIDM+E+KN V + Sbjct: 829 DINTGKYVGKTARLEDTIVKTNLDAIPEIVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQ 888 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E LK DRA +V ++FGL+ ++R+R++ S+ + + C C G G ++S ++VA Sbjct: 889 ALEEELKHDRAPSKVLQFNDFGLVAITRKRVKQSLERTLSIPCNICTGTGMVKSPATVAN 948 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 I + + ++++ + +VV L + E E G +I V L + Sbjct: 949 EIYVEMRKMQRHLENKDVLLRVNPEVVKTLKASGGRWLNELEEMTGKTIIVKSDPTLHPE 1008 Query: 562 LFYI 565 F I Sbjct: 1009 QFDI 1012 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA ++ I +S ETR+ +L D+++ E+ +E E++ + G+IY +VTRV P +Q+AFVD Sbjct: 1 MAKEICI-SSTPHETRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVD 59 Query: 61 YGGNRHGFLPFLE 73 G R FL + Sbjct: 60 IGLERDAFLYVTD 72 >gi|113460420|ref|YP_718482.1| ribonuclease G [Haemophilus somnus 129PT] gi|112822463|gb|ABI24552.1| RNAse G [Haemophilus somnus 129PT] Length = 491 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 124/414 (29%), Positives = 208/414 (50%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + +K I +++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDVDEQKQFVVKDIAQLVHEGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+ L G G I+RTA T+ E+ +D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR-LKELVLPLCDELG-GFIIRTAAEGATETELVQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD + S+I + + + E K F + MP Sbjct: 195 RKVLERRAKYTTRSMLYGELALTQRILRDFIGANFSKIHIDSKLCFSEVKQFTEEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P+F +E + + + V L S GY+II QTE++ +ID+N+G Sbjct: 255 TDKLVLYSGSQPLFDVYSVENAIQTALNSRVNLKSGGYLIIEQTESMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ +++ V + L+ +L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTEEHRDRVLESLRLALSKDRV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHILCDECPTCSGRGSVKTVETVCYEIMREIIRVNH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565 + + +V+ V YL+N++ + E E G I + + + + F + Sbjct: 435 LFASEKFVVYASRAVADYLINEESHGLLAELEVFIGKQIQIKTEVYYSQEQFDV 488 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 1 MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M + ++L + + ETR+ ++ + ++E+ E + K+ GNIY +VTRV P +Q+AFV Sbjct: 1 MESVELLANIT-PSETRIALVDNGILKEVHIERQAKRGSVGNIYKGRVTRVLPGMQSAFV 59 Query: 60 DYGGNRHGFLPFLEIHP 76 D G + FL +I Sbjct: 60 DIGLEKAAFLHASDIVS 76 >gi|318603973|emb|CBY25471.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Yersinia enterocolitica subsp. palearctica Y11] Length = 489 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 204/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 76 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F + +P Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDFLVEFTREYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALTKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|242241071|ref|YP_002989252.1| ribonuclease G [Dickeya dadantii Ech703] gi|242133128|gb|ACS87430.1| ribonuclease, Rne/Rng family [Dickeya dadantii Ech703] Length = 489 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKATVADYCDEQG-GFIIRTAAEGIGEEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 SKVMERKKRNQTRCKLYGELALAQRILRDFAGASLDRIRVDSRLTYESLLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TEKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCHGRGSVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASPLVGDALKSEESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|327483276|gb|AEA77683.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio cholerae LMA3894-4] Length = 487 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 118/413 (28%), Positives = 197/413 (47%), Gaps = 4/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERERLKK--IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L +R +RD ++++I++ + + K+F +P Sbjct: 194 SKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF E ++ + +V L S G II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGG--IIDQTEAMTTIDINTGAFVGR 311 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR Sbjct: 312 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLEAALMKDRV 371 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Sbjct: 372 KTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNR 431 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+ V L ++ + E E G + + + F + Sbjct: 432 AYDADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 484 >gi|126668766|ref|ZP_01739714.1| Ribonucleases G and E [Marinobacter sp. ELB17] gi|126626749|gb|EAZ97398.1| Ribonucleases G and E [Marinobacter sp. ELB17] Length = 496 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 116/403 (28%), Positives = 208/403 (51%), Gaps = 5/403 (1%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+ +++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP + R + Sbjct: 91 PDIRTLLREGQSLVVQVTKDPIGTKGARLTTQLSIPSRYLVFMPGVNHIGISQRIEDDAE 150 Query: 228 DRKNLKEI-----ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + V G I+RTA + + ++ D +YL RL ++ E Sbjct: 151 RARLKAIVDGAASEQASSVAIQGGYIIRTAAEAASADDLTADMKYLHRLGQSINERMGKV 210 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP ++Y++ L R IRDL ++ + + ++ +F+ + +A V Y Sbjct: 211 QAPAVIYQDLPLFIRTIRDLIRPQTEKVRIDSRESHQRVMEFVHEFVSEFADKVEYYPGE 270 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 PIF +E ++ +V L S GYVII+QTEA+ +ID+N+G +E+T +T Sbjct: 271 RPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAMTTIDINTGAFVGHRNLEETIFKT 330 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAA I+RQLRLR+L G+I++DFIDM++ ++ R V + L++ L++D A+ ++ +S Sbjct: 331 NLEAARAISRQLRLRNLGGIIIIDFIDMDDAEHKRQVHRMLEKMLERDHAKTKITGVSEL 390 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 GL+EM+R+R S+ + + C C G G++++ +V I R + Y + +V Sbjct: 391 GLVEMTRKRTTESLGQVLCEPCPICDGRGFLKTGETVCYEIFREILRVNRAYDTESYLVM 450 Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV L++++ + + E +I + + + + + Sbjct: 451 ASQRVVDLLVDEESDNVADLETFICKTIRFQVEPFYSQEQYDV 493 Score = 137 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ + ++E E +K I GNIY KV RV P ++AAFVD Sbjct: 1 MSEEILINVT-PVETRVALVENGMLQEAYIERASRKGIVGNIYKGKVVRVLPGMEAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ ++ Sbjct: 60 IGLERAAFIHASDV 73 >gi|218550530|ref|YP_002384321.1| ribonuclease G [Escherichia fergusonii ATCC 35469] gi|218358071|emb|CAQ90717.1| ribonuclease G [Escherichia fergusonii ATCC 35469] gi|324115150|gb|EGC09114.1| rne/Rng family protein ribonuclease [Escherichia fergusonii B253] gi|325498825|gb|EGC96684.1| ribonuclease G [Escherichia fergusonii ECD227] Length = 489 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVADYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|239906339|ref|YP_002953080.1| ribonuclease E and G family protein [Desulfovibrio magneticus RS-1] gi|239796205|dbj|BAH75194.1| ribonuclease E and G family protein [Desulfovibrio magneticus RS-1] Length = 487 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 156/395 (39%), Positives = 237/395 (60%), Gaps = 3/395 (0%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 + + IQ+ +K Q LLVQ+VKE G+KGA +TTYLSL GRY VL P + +SR Sbjct: 93 DRRPKYPPIQKALKKNQELLVQVVKEPTGHKGAFLTTYLSLPGRYFVLTPGREQRG-VSR 151 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + +RK LKE+ GL++ G+G+I+RTA S++K ++RD YL RLW VR+ Sbjct: 152 KIEDEAERKRLKEVISGLKLDEGLGLIVRTAALSQSKTSLERDLSYLKRLWKEVRQRGTT 211 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYE 340 + P L+Y+E +L RA+RD D+ EI V + + + L+ P + + + Sbjct: 212 AETPSLIYQELDLSSRAVRDYLTDDVGEIWVDEPETAKRVSEMATLVYPRRPGIVKQHPD 271 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 P++ R + Q++ L+ EVTLPS G ++ + EAL ++D+NSG+ E + AL Sbjct: 272 VDVPLWDRFNLRKQIEQLYGREVTLPSGGVLVFDHAEALTAVDINSGKIGGESNFREMAL 331 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 +TN+EA+EE+ARQLRLRD+ G +V+DFI+M+++K+ VEK L+ + K DRAR VG IS Sbjct: 332 KTNIEASEEVARQLRLRDIGGQVVIDFIEMKDRKHVAEVEKTLRAAFKNDRARTDVGRIS 391 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN-I 519 FGLLE+ RQR+ SS L T++ C C G+G R+ AL++L+ + L + ++ + Sbjct: 392 RFGLLEIVRQRLGSSALSITSEPCPCCNGSGQRRNHEWQALTVLKDIYRQLRKDSSQETV 451 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 ++ YLLN KRA + E F I + Sbjct: 452 TAKVSEELSRYLLNHKRARLSAMEEEFKKKIVINA 486 Score = 111 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 50/81 (61%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 KM I E+ V V D ++ E E H+ + +G+IY K+ ++P+LQAAF++YG Sbjct: 10 KMFISVLPGEQVEVAVAEDGQLLEYYVEMVHQAKTRGHIYKGKIHNIDPALQAAFINYGA 69 Query: 64 NRHGFLPFLEIHPDYYQIPFS 84 R+GFL E+HP+YYQI + Sbjct: 70 ERNGFLQIDEVHPEYYQIVQA 90 >gi|220904065|ref|YP_002479377.1| ribonuclease, Rne/Rng family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868364|gb|ACL48699.1| ribonuclease, Rne/Rng family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1076 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 160/400 (40%), Positives = 242/400 (60%), Gaps = 2/400 (0%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 P K K+ IQ+V+K Q +LVQ+VKE G+KGA +TT+LSLAGR+ VL P + Sbjct: 678 HHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTTWLSLAGRFLVLTPGQEQIG 737 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 +SRK+ + +R L+E+ G++ G+GVI+RT A TK +K D +YL R+W ++R+ Sbjct: 738 -VSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKTTLKNDLQYLKRVWRDIRK 796 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 A AP L+Y+E L +RA+RD D+ EI V E + ++ + LL P + +VR Sbjct: 797 KATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQSIRETVNLLFPRKSDLVR 856 Query: 338 QY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + + ++ R + QLD ++ EV LPS G ++ +QTEAL+++D+NSG+ + + E Sbjct: 857 LHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTEALMAVDINSGKISGKGNFE 916 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 A +TN+EAAE IAR L+LRD+ G +V+DFI+M +KK+ VEK L+ ++K DRAR V Sbjct: 917 AMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHIIEVEKTLRSAMKNDRARHDV 976 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G +S FGLLE+ RQR SS L T + C C G G R+ AL LR + L + Sbjct: 977 GRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLEWQALQALRELRRMLRAESK 1036 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 + T +++ LYLLN KR ++ E E +G + + + Sbjct: 1037 EKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP 1076 Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +M I E+ V + D ++ E + H+++IKGNIY + ++ +LQAAFV YG Sbjct: 599 RRMFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYG 658 Query: 63 GNRHGFLPFLEIHPDY 78 ++GFL EIHP+Y Sbjct: 659 AGKNGFLQIDEIHPEY 674 >gi|323699234|ref|ZP_08111146.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. ND132] gi|323459166|gb|EGB15031.1| ribonuclease, Rne/Rng family [Desulfovibrio desulfuricans ND132] Length = 488 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 248/476 (52%), Gaps = 7/476 (1%) Query: 81 IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 +P + ++ E + + A F E + Sbjct: 14 LPGEQVEVVIAEEGKVNEYYVEMVHQAKTKGNIYKGYIHNIDNGLQAAFINYGAERNGFL 73 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 ++V + + + ++ +K Q +LVQ+VKE G KGA +T+YL Sbjct: 74 QIDEVHPEYYINEVPTKKGQRFPLMQKV-----LKPGQEVLVQVVKEPTGKKGAFLTSYL 128 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SL GR V S+ +SRKI + +R LK G E G+G+I RTA ++K Sbjct: 129 SLPGRCFVYTVGRSQIG-VSRKIEDEKERDRLKTALEGFETAEGVGLIARTAAVGQSKAA 187 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 ++RDF+YL RLW ++R A AP VY+E L RA+RD DI+EI V ++ Y + Sbjct: 188 LERDFKYLNRLWTDIRANAQKVKAPAPVYQELGLAARAVRDYLTLDITEIWVDDKETYEQ 247 Query: 321 AKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 F+KL P +VR + ++ + R + Q++ ++ E ++PS G ++ + TEAL Sbjct: 248 VHQFVKLAFPRKNNLVRLHEDNELSLLERFNLVKQVEEIYSREASMPSGGRLVFDATEAL 307 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 ++D+NSG+ E + AL+TN+EAA EIARQLRLRD+ G +V+DFI+M+ K+ R V Sbjct: 308 TAVDINSGKIGGEKNFQKMALKTNVEAAREIARQLRLRDIGGQVVIDFIEMKNPKDCREV 367 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 EK ++ +K DRAR V IS+FGL+E+ RQR+ SS + +T+ C CKG G R+ Sbjct: 368 EKVMRAEMKNDRARTDVSRISSFGLMELVRQRLGSSAIAISTEPCPCCKGTGIRRNMEWQ 427 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 AL L+ + L + + + ++ +YLLN KR + + E R+ +I++ I Sbjct: 428 ALQALKDIHRDLRKPGSDEVQYDCEEELAIYLLNNKRGILADLEKRYEKTIHIDIE 483 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 1 MANK----MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56 M K M I E+ VV+ + +V E E H+ + KGNIY + ++ LQA Sbjct: 1 MTKKKRQKMFISVLPGEQVEVVIAEEGKVNEYYVEMVHQAKTKGNIYKGYIHNIDNGLQA 60 Query: 57 AFVDYGGNRHGFLPFLEIHPDYY 79 AF++YG R+GFL E+HP+YY Sbjct: 61 AFINYGAERNGFLQIDEVHPEYY 83 >gi|88858680|ref|ZP_01133321.1| RNase G (ribonuclease G) [Pseudoalteromonas tunicata D2] gi|88818906|gb|EAR28720.1| RNase G (ribonuclease G) [Pseudoalteromonas tunicata D2] Length = 490 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 128/405 (31%), Positives = 209/405 (51%), Gaps = 2/405 (0%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 + K+ I+E+++ Q ++VQ+VK+ G KGA +TT +++ RY V MP+ + Sbjct: 85 EQPIKKVQDIRELVRQGQQIMVQVVKDPLGTKGARLTTEITIPSRYLVFMPDATHVGVSQ 144 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 R T+ + LK+I G G I+RTA ++E+ D ++L +LW V Sbjct: 145 RIETDEERSR-LKKIVAEYNDEEG-GFIVRTAAEGACEVELAHDAKFLKKLWKKVIAKRK 202 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 + L++++ L R +RD +D+ I V + ++E K F + +P + Y Sbjct: 203 AARKETLLHDDLTLAFRTLRDYVGEDMERIRVDSKLAFQELKAFTEEFVPELTATLEYYP 262 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G +E+T Sbjct: 263 GERPIFDLFDVENEVQKALHRKVELKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIF 322 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 TN+EA + IARQLRLR+L G+I++DFIDM + R V L+ +L+KDRA+ + S Sbjct: 323 NTNIEATQAIARQLRLRNLGGIIIIDFIDMTTADHKRRVLHSLEVALQKDRAKANINGFS 382 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 GL+EM+R+R R S+ +C C G G +++ +V ILR + Y A + Sbjct: 383 ALGLVEMTRKRTRESLGHILCGICPVCDGRGALKTVETVCYEILREIVRVNRAYAADKFV 442 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ V LLN + + E E G I + I + F + Sbjct: 443 VYASQAVSEALLNDEYHNLAELELFIGKPIKIQIESLYNQEQFDV 487 >gi|114331600|ref|YP_747822.1| ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91] gi|114308614|gb|ABI59857.1| RNAse G [Nitrosomonas eutropha C91] Length = 483 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 232/469 (49%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156 Q A+ + ++ I SL V I N + SA D+ + Sbjct: 12 QETRVAIIEQGITQELHIERTSSLGIVGNIYNGRVSRVLPGMQSAFIDIGLERAAFLHVA 71 Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + + I++++ +LVQ+VK+ G KGA ++T +SLAGR V +P S Sbjct: 72 DIHESGQTEHNKPIEQLLSEGSNILVQVVKDAIGVKGARLSTQISLAGRLLVYLPQESYI 131 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R N +++ L + G I+RT + + E++ D +YL +LW +++ Sbjct: 132 GVSQRIEDNNERESLRQKLQSILPPDSSGGYIIRTMAETADESELQADIDYLHKLWQDIQ 191 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + +L P L+Y++ +L R +RD D + + + +++ F + M S + Sbjct: 192 KKSLTISPPSLLYQDLDLSHRVLRDFVNADTYRVRIDSRETHQKLTTFAQEYMMSDMEKI 251 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 Y P+F G+E +++ V L S GYVII+QTEAL ++DVN+G + Sbjct: 252 SHYTGERPLFDLYGVEQEIEKSLARRVDLKSGGYVIIDQTEALTTMDVNTGGFVGVRNFD 311 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 DT +TNLEAA+ IARQLRLR+L G+I++DFIDM+ +++ +V + ++L+KDR ++ V Sbjct: 312 DTIFKTNLEAAQVIARQLRLRNLGGIIIIDFIDMDREEHRAAVLAEFNKTLQKDRTKMTV 371 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 + GL+EM+R+R R S+ + + C C+G G IR+ ++ ILR + Q+ A Sbjct: 372 NDFTALGLIEMTRKRTRESLAQILCETCPTCQGRGEIRTAQTICYEILRELLRESRQFNA 431 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ + I + +G + + + Sbjct: 432 KEYRILASQQVIDLFLDEESQSLAQLGDFIAKPIGLQVGTTYTQEQYDV 480 >gi|212711065|ref|ZP_03319193.1| hypothetical protein PROVALCAL_02134 [Providencia alcalifaciens DSM 30120] gi|212686233|gb|EEB45761.1| hypothetical protein PROVALCAL_02134 [Providencia alcalifaciens DSM 30120] Length = 489 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 130/413 (31%), Positives = 202/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E++K Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE G G I+RTA + ++K+D +L RLW Sbjct: 136 ASHVGVSQRIDSEEERER-LKECVAQYCDENG-GFIIRTAAEGVAEEDVKQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +V +Y E +L R IRD + I V Y + ++F+ +P Sbjct: 194 AKVIERKKRNVTRTKIYGELSLAYRIIRDFAGASLDRIRVDSRLTYSQLEEFIAEYVPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y+ PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V L+++L KD+ Sbjct: 314 RNLEETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSDAEHRRRVLASLEQALSKDKV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDTCPTCQGRGTVKSVETVCYEILREIVRVHR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ VV L + + E E G + V + + F + Sbjct: 434 TIDADRFLVYASQAVVDVLTGDESHALAEVEIFVGKQVKVQTEPLYSQERFDV 486 >gi|238764602|ref|ZP_04625548.1| Ribonuclease G [Yersinia kristensenii ATCC 33638] gi|238697192|gb|EEP89963.1| Ribonuclease G [Yersinia kristensenii ATCC 33638] Length = 441 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 204/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 28 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 87 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 88 AAHVGVSQRIESEVERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 145 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F + +P Sbjct: 146 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTREYIPEM 205 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 206 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 265 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 266 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 325 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 326 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 385 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 386 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 438 >gi|123443982|ref|YP_001007952.1| ribonuclease G [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090943|emb|CAL13825.1| ribonuclease G [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 489 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 76 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 136 AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F +P Sbjct: 194 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALTKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTSISGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|206578309|ref|YP_002236340.1| ribonuclease G [Klebsiella pneumoniae 342] gi|288933327|ref|YP_003437386.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22] gi|290511623|ref|ZP_06550992.1| ribonuclease G [Klebsiella sp. 1_1_55] gi|206567367|gb|ACI09143.1| ribonuclease G [Klebsiella pneumoniae 342] gi|288888056|gb|ADC56374.1| ribonuclease, Rne/Rng family [Klebsiella variicola At-22] gi|289776616|gb|EFD84615.1| ribonuclease G [Klebsiella sp. 1_1_55] Length = 489 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 127/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESEAERER-LKKVVADYCDEQG-GFIIRTAAEGVHEQEMAADAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAHLDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G ++S +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKSVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|78355584|ref|YP_387033.1| ribonuclease E [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217989|gb|ABB37338.1| RNAse E [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 486 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 157/415 (37%), Positives = 248/415 (59%), Gaps = 2/415 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + S P K K+ +Q+V+K Q +LVQ+VKE G+KGA +T+ Sbjct: 69 AEKNGFLQVDEVHPEYYSAPHDPSKGKKYPLLQKVLKAGQEVLVQVVKEPTGSKGAFLTS 128 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSL GR+ VL P + +SRK+ + +R L+ + G G+G+I+RT ++K Sbjct: 129 YLSLPGRFLVLTPGREQIG-VSRKVESEEERVRLRALLEGATPGPGLGLIVRTVSVGQSK 187 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 I+RD ++L RLW +VR+ AP L+Y+E +L RA+RD D+ E+ V E+ Sbjct: 188 TSIQRDLQFLKRLWKDVRKKGTVEKAPSLIYKELDLAARAVRDYLTDDVGEVWVDDEQTA 247 Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++F ++ P +V+++ + ++ R ++ QLD ++ EV+LPS G ++ +QTE Sbjct: 248 DAVQEFAAIVFPRRTNLVKRHKDTDRTLWERFSMQKQLDQIYSREVSLPSGGRLVFDQTE 307 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL++ID+NSG+ + E AL+TN+EAAE IA+QL+LRD+ G IVVDFI+M ++ + R Sbjct: 308 ALMAIDINSGKIAGKTNFESMALRTNMEAAETIAQQLKLRDIGGQIVVDFIEMRDRNHWR 367 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK L+ ++K DRAR VG +S FGLL++ RQR+ SS L +T+ C CKG G R+ Sbjct: 368 EVEKTLRAAMKNDRARHDVGKMSRFGLLQIVRQRLGSSALSISTEPCPCCKGTGLRRNME 427 Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 A+ L+ + L TA ++ ++ +YLLN KR + E E RF I++ Sbjct: 428 WQAMQALKDIHRQLRATTASSLRWEAPEELGMYLLNHKRGHLTELENRFERDIDI 482 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 1 MAN------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54 M KM I E+ VV+ + + E E H+ + KGNIY + ++ +L Sbjct: 1 MEKTRKGKRKMFISVLPEEQVEVVLSEEGVIVEYYVEMVHQAKTKGNIYKGIINNIDSNL 60 Query: 55 QAAFVDYGGNRHGFLPFLEIHPDYYQIP 82 QAAFV+YG ++GFL E+HP+YY P Sbjct: 61 QAAFVNYGAEKNGFLQVDEVHPEYYSAP 88 >gi|325920743|ref|ZP_08182649.1| RNAse G [Xanthomonas gardneri ATCC 19865] gi|325548795|gb|EGD19743.1| RNAse G [Xanthomonas gardneri ATCC 19865] Length = 499 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKIVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCSGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 LGLERAAFLHANDV 73 >gi|332999323|gb|EGK18909.1| ribonuclease G [Shigella flexneri K-272] gi|333014692|gb|EGK34038.1| ribonuclease G [Shigella flexneri K-227] Length = 489 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD ++ I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ ++ E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAEALKGEESLSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|152972168|ref|YP_001337314.1| ribonuclease G [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896752|ref|YP_002921497.1| ribonuclease G [Klebsiella pneumoniae NTUH-K2044] gi|262042802|ref|ZP_06015955.1| ribonuclease G [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997564|ref|ZP_08302838.1| ribonuclease G [Klebsiella sp. MS 92-3] gi|150957017|gb|ABR79047.1| RNase G [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549079|dbj|BAH65430.1| RNase G [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039869|gb|EEW40987.1| ribonuclease G [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538997|gb|EGF65045.1| ribonuclease G [Klebsiella sp. MS 92-3] Length = 489 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 127/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + E+ D YL R+W Sbjct: 136 ASHVGVSQRIESEAERER-LKKVVAEYCDEQG-GFIIRTAAEGVHEQEMAADAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRNQTRYQLYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R SV C C G G ++S +V I+R + Sbjct: 374 KTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKSVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 434 AYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 486 >gi|78048483|ref|YP_364658.1| ribonuclease G [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036913|emb|CAJ24606.1| ribonuclease G [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 499 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 217/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITE 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|294625522|ref|ZP_06704150.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600191|gb|EFF44300.1| ribonuclease G [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 499 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 218/392 (55%), Gaps = 2/392 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRGLNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + + Sbjct: 405 ESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITD 464 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ A + E E G SI + + F + Sbjct: 465 EESAAVAELEEFLGKSIRFQSDDQYLQEQFDV 496 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|256004841|ref|ZP_05429815.1| ribonuclease, Rne/Rng family [Clostridium thermocellum DSM 2360] gi|255991151|gb|EEU01259.1| ribonuclease, Rne/Rng family [Clostridium thermocellum DSM 2360] gi|316941082|gb|ADU75116.1| ribonuclease, Rne/Rng family [Clostridium thermocellum DSM 1313] Length = 490 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 123/555 (22%), Positives = 232/555 (41%), Gaps = 78/555 (14%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 +L D + EL E +++ GNIY +V V P +QAAF+D G ++ FL + Sbjct: 11 LLEDRELVELFIERNDCERLVGNIYRGRVESVLPGMQAAFIDIGYEKNAFLYVGD----- 65 Query: 79 YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138 IP D E + DV ++ E + T+ Sbjct: 66 -AIPQ----------KEFSEDDEEIYSDVKSYNIEEILRPGQEITVQVTKEPIGTKGP-- 112 Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA-VT 197 + + RQ++L+ ++ Sbjct: 113 ----------------------------RVTTHITLPGRQMVLLPNADYIGISRRIEDEE 144 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 L + P I R ++ ++ K L Sbjct: 145 ERAKLRKIAEKIKP--KNMGIIVRTVSEGKREEDFKNDLNFL------------------ 184 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 ++LW +++ + P ++++ ++I RA+RD++ +I +++ + Sbjct: 185 -----------VKLWAKIKQREQSGPVPRCLHKDLSVIYRAVRDIFTWNIDRFVINDRQE 233 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 Y + + ++++ P+ V + +F I+ + +V L GY++I +TE Sbjct: 234 YNKVLELVEMISPALKMRVEYFNKNIDLFEYYQIDSMIQKALAKKVWLKCGGYIVIERTE 293 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL IDVN+G+ + +EDT L+TNL+A +EI +QLRLRD+ G+I++DFIDM + ++ + Sbjct: 294 ALTVIDVNTGKYVGVNNLEDTVLRTNLDAVKEIGKQLRLRDIGGIIIIDFIDMHDPEHQK 353 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 V + LK+ LKKDR + V ++ GL+EM+R+++R + + C YC+G G I S Sbjct: 354 QVLEALKQVLKKDRTKTTVVGMTGLGLIEMTRKKVREGLESMMLQDCPYCEGRGKILSPE 413 Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 SVA ++ + + +Y + A+ I+V H V L + + + F + + E Sbjct: 414 SVARNVEKEISKYFTKTIANAIMVEVHPTVAEVLRGEDNDNLARIQNLFNKKVIIKPSAE 473 Query: 558 LADKLFYIEKGSPVQ 572 + + I++ Sbjct: 474 VGHEEVKIKEVDIDT 488 >gi|238782973|ref|ZP_04627001.1| Ribonuclease G [Yersinia bercovieri ATCC 43970] gi|238797926|ref|ZP_04641417.1| Ribonuclease G [Yersinia mollaretii ATCC 43969] gi|238716176|gb|EEQ08160.1| Ribonuclease G [Yersinia bercovieri ATCC 43970] gi|238718231|gb|EEQ10056.1| Ribonuclease G [Yersinia mollaretii ATCC 43969] Length = 441 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 28 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 87 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 88 AAHVGVSQRIESEVERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 145 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F +P Sbjct: 146 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 205 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 206 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 265 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 266 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 325 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 326 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 385 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 386 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 438 >gi|166711430|ref|ZP_02242637.1| ribonuclease G [Xanthomonas oryzae pv. oryzicola BLS256] Length = 499 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 123/391 (31%), Positives = 211/391 (53%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P + +R + Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEVERLRLKTI 165 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 ++ G G I+RT + + D YL R+W+ V + ++YE+ +L Sbjct: 166 VSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSL 225 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E + Sbjct: 226 PLRAVRDLIRRDVEKVKVDSNETFLQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDE 285 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQL Sbjct: 286 IGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQL 345 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 346 RLRNLGGIIIIDFIDMDDSEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVE 405 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ ++ C C G G I++ +V I R + + Q+ A ++V S VV + ++ Sbjct: 406 SLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITDE 465 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565 + A + E E G SI + + F + Sbjct: 466 ESAAVAELEEFLGKSICFQSDDQYLQEQFDV 496 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|209694082|ref|YP_002262010.1| ribonuclease G [Aliivibrio salmonicida LFI1238] gi|208008033|emb|CAQ78172.1| ribonuclease G [Aliivibrio salmonicida LFI1238] Length = 489 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + K+ + I +++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVSENEKRQFQVRDISQLVHQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK G G I+RTA + EI +D +L RLW Sbjct: 136 ASHVGVSQRIESEKERNR-LKNTVSDYCDEFG-GFIIRTAAEGAKEAEISQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E S ++Y E L +R +RD ++ I V ++ + + K+F +P Sbjct: 194 HKVIERRKKSKTKSMLYGELGLDQRILRDFVGTELDLIRVDSKQAFEKLKEFTTEFVPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TKKLEYYSGDKPIFDMYETENEIQRALDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGR 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V + L +L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMMSEEHRRRVLQVLGAALDKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + GL+EM+R+R R S+ C C+G G +++ SV ILR + Sbjct: 374 KTNINGFTQLGLVEMTRKRTRESIEHVLCGQCPTCEGRGAVKTVESVCYEILREITRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + + + F + Sbjct: 434 AYDSDKFVVYAAVAVADALQGEESHALAELELFIGKQVKIQAEPLYIQEQFDV 486 >gi|315125438|ref|YP_004067441.1| ribonuclease G [Pseudoalteromonas sp. SM9913] gi|315013951|gb|ADT67289.1| ribonuclease G [Pseudoalteromonas sp. SM9913] Length = 490 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 142/484 (29%), Positives = 243/484 (50%), Gaps = 7/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + + G++ + + A F E++ Sbjct: 11 PSESRVALIENGVLQEIQLERIGNLGIVGNIYLGKISRV-LPGMQAAFVDIGLEKAAFLH 69 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +D+V++ V+G E + + I+E+++ Q ++VQ+VK+ G+KGA +TT ++ Sbjct: 70 ASDIVNSASIVEGVDDEPIK----KVQDIRELVRQGQYIMVQVVKDPLGSKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 + RY V MP+ + R T + LK+I G I+RTA ++ E+ Sbjct: 126 IPSRYLVFMPDATHVGVSQRIETEEERAR-LKKIVAEYGDENG-SFIVRTAAEGASEAEL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + D +L +LWD + + +++E+ L R +RD +D+ I V + Y+E Sbjct: 184 RHDAAFLKKLWDKIVSRRRKTSKASILHEDLTLAFRTLRDYVGEDMERIRVDSKLTYQEL 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F + +P ++++ Y PIF +E ++ +VTL S GY+II+QTEA+ + Sbjct: 244 KLFTEEFVPLLSQVLEYYPGERPIFDLFDVESEIQKALHRKVTLKSGGYLIIDQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVN+G +E+T TN+EA IARQLRLR+L G+I++DFIDM ++ R V Sbjct: 304 VDVNTGAFVGHRNLEETIFNTNVEATSAIARQLRLRNLGGIIIIDFIDMVSDEHKRRVMH 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +L KDRA+ + +S GL+EM+R+R R S+ VC C G G ++ +V Sbjct: 364 SLESALDKDRAKSNINGLSALGLVEMTRKRTRESLEHVLCDVCPACSGRGSQKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 ILR + Y A +V+ V LLN + + E E G +N+ + + Sbjct: 424 EILREIVRVNRAYDADKFVVYASPAVCEALLNDEYHNLAELELFIGKQVNIQTESLYSQE 483 Query: 562 LFYI 565 F + Sbjct: 484 QFDV 487 >gi|183597978|ref|ZP_02959471.1| hypothetical protein PROSTU_01328 [Providencia stuartii ATCC 25827] gi|188022751|gb|EDU60791.1| hypothetical protein PROSTU_01328 [Providencia stuartii ATCC 25827] Length = 489 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 133/413 (32%), Positives = 205/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E++K Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGDEQKNFHVRDIAELVKQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE G G I+RTA + E+K+D +L RLW Sbjct: 136 ASHVGVSQRIESESERER-LKECVSQYCDENG-GFIIRTAAEGVGEDEVKQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +V +Y E +L R IRD + I V Y+E ++F++ +P Sbjct: 194 AKVIERKKRNVTRTKIYGELSLAYRIIRDFAGASLDRIRVDSRLTYKELQEFIEEYVPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y+ PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYQGNQPIFDLFDVENEIQRAMDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + ++ R V L+++L KD+ Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSDIEHRRRVLASLEQALSKDKV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ VC C+G G ++S +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDVCPTCQGRGTVKSVETVCYEILREIVRVHR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ VV L + + E E G + V + + F + Sbjct: 434 TIDADRFLVYASQSVVDALTGDESHALAEVEIFVGKQVKVQTESLYSQEQFDV 486 >gi|238789801|ref|ZP_04633583.1| Ribonuclease G [Yersinia frederiksenii ATCC 33641] gi|238722160|gb|EEQ13818.1| Ribonuclease G [Yersinia frederiksenii ATCC 33641] Length = 437 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 24 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 83 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 84 AAHVGVSQRIESEAERER-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 141 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F +P Sbjct: 142 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 201 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 202 TEKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 261 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 262 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 321 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 322 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 381 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 382 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 434 >gi|52424833|ref|YP_087970.1| ribonuclease G [Mannheimia succiniciproducens MBEL55E] gi|52306885|gb|AAU37385.1| CafA protein [Mannheimia succiniciproducens MBEL55E] Length = 491 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 123/414 (29%), Positives = 204/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDESEQKQFIVKDIAELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA T+ E+K+D ++L RLW Sbjct: 137 NSHVGVSQRIESEDERAR--LKALVEPYCDELGGFIIRTAAEGATEDELKQDADFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++Y E L R +RD I +I + + + E +F + MP Sbjct: 195 RKVMERKAKYPTRSMLYGELALALRVLRDFVGAGIEKIRIDSKLCFTEVNEFCEEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y P+F G+E + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 VDKLVLYSGNQPLFDVYGVETAIQIALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L+E+L KDR Sbjct: 315 RNLEETIFNTNIEATQAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVIQSLEEALSKDRV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C+G G++++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCGECPACQGRGHVKTVETVCYEIMREIIRVHH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ I E E G + V + F + Sbjct: 435 LFSSEQFVVYASRAVSEYLINEESHGLIAELEVFIGKQVQVKTEVYYNQDQFDV 488 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 1 MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M + ++L++ + ETR+ ++ ++E+ E + K+ I GNIY +VTRV P +Q+AFV Sbjct: 1 MNSVELLVNVT-PNETRIALVDTGILKEVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFV 59 Query: 60 DYGGNRHGFLPFLEIHP 76 D G + FL +I Sbjct: 60 DIGLEKAAFLHASDIVS 76 >gi|253991173|ref|YP_003042529.1| ribonuclease G [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782623|emb|CAQ85787.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein) [Photorhabdus asymbiotica] Length = 489 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGEEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK I G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEDERNR-LKNIVADYCDEHG-GFIIRTAAEGVGDDELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +V + +Y E L R +RD + I V + + ++F+ +P Sbjct: 194 SKVIERKKRNVTKNKLYGELALAHRILRDFAGTALDRIRVDSRLMFNQLQEFISEYIPKM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELYNGNQPIFDLFDVENEVQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNSEDHRRRVLASLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G ++S +V I+R + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHILCDDCPTCHGRGTVKSVETVCYEIMREIVRVHR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +++ VV L ++ + E E G + V + + F + Sbjct: 434 AVDADRFLIYASPAVVEALKGEESHALAEVEIFVGKQVKVQTEQLYSQEQFDV 486 >gi|30248372|ref|NP_840442.1| ribonuclease E/G [Nitrosomonas europaea ATCC 19718] gi|30138258|emb|CAD84266.1| S1 RNA binding domain:Ribonuclease E and G [Nitrosomonas europaea ATCC 19718] Length = 481 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 120/407 (29%), Positives = 212/407 (52%) Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 + I++++ +LVQ+VK+ G KGA ++T +SLAGR V +P S Sbjct: 72 HESSQNDHHKPIEQLLSEGSNILVQVVKDAIGVKGARLSTQVSLAGRLLVYLPQESYIGV 131 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 R N +++ L + G I+RT + + E++ D YL +LW ++++ Sbjct: 132 SQRIEDNSERESLRQKLQNILPPDSTGGYIIRTMAETAEEPELQADIVYLHKLWQDIQKK 191 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 +L +P L+Y++ +L R +RD D + V + +++ F M S + Sbjct: 192 SLTISSPSLLYQDLDLSLRVLRDFVNADTYRVRVDSRETFQKLTTFAHEYMMSDLEKISH 251 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y P+F G+E +++ V L S GYVII+QTEAL ++DVN+G +DT Sbjct: 252 YIGERPLFDLYGVEQEIEKSLARRVDLKSGGYVIIDQTEALTTMDVNTGGFVGIRNFDDT 311 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEAA+ IARQLRLR+L G+I++DFIDM+ +++ +V + ++L+KDR ++ V Sbjct: 312 IFKTNLEAAQVIARQLRLRNLGGIIIIDFIDMDREEHRAAVLAEFNKALQKDRTKMTVNG 371 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 + GL+EM+R+R R S+ + + C C+G G IR+ ++ ILR + Q+ A Sbjct: 372 FTALGLVEMTRKRTRESLAQILCETCPTCQGRGEIRTAQTICYEILRELLRESRQFDAKE 431 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ + I + +G + + + Sbjct: 432 FRILASQPVIDLFLDEESQSLAQLGDFIARPIGLQVGASYTQEQYDV 478 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%) Query: 10 SHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69 S +ETRV ++ +EL E + I GNIY +V+RV P +Q+AF+D G R FL Sbjct: 7 SPPQETRVAIIEHGITQELHIERTSSRGIVGNIYNGRVSRVLPGMQSAFIDIGLERAAFL 66 Query: 70 PFLEIH 75 +IH Sbjct: 67 HVADIH 72 >gi|251791389|ref|YP_003006110.1| ribonuclease G [Dickeya zeae Ech1591] gi|247540010|gb|ACT08631.1| ribonuclease, Rne/Rng family [Dickeya zeae Ech1591] Length = 489 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK+ G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKKTVADYCDEQG-GFIIRTAAEGVGEEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L R +RD + I V + Y +F +P Sbjct: 194 TKVMERKKRNQTKCKLYGELALAHRILRDFAGASLDRIRVDSKLTYDSLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLEHYSGKQPIFDLYDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMANEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G +++ +V I+R + Sbjct: 374 KTGISGFSQLGLVEMTRKRTRESIEHVLCSECPTCRGRGSVKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASPAVGEALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|56477682|ref|YP_159271.1| ribonuclease G (RNase G) [Aromatoleum aromaticum EbN1] gi|56313725|emb|CAI08370.1| ribonuclease G (RNase G) [Aromatoleum aromaticum EbN1] Length = 484 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 121/410 (29%), Positives = 200/410 (48%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 I+ ++ Q L VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 72 DIWSDRHNGDAGRPIERILAEGQNLTVQVLKDPIGTKGARLSTQISIAGRLLVYLPQEKH 131 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R + + R + G I+RT S + E+ D YL +LW + Sbjct: 132 IGISQRIEDESEREALRERLTRLVPADEAGGFIVRTMAESASDDELGADIGYLRKLWSEI 191 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 R A P L+YE+ L +R +RDL D S I+V + +++ F P + Sbjct: 192 RNSATGRFPPSLLYEDLGLGQRVLRDLVDDDTSRILVDSRENHQKLTAFAAEYSPKVLPL 251 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F +E ++ V+L S GY+II+QTEA+ +IDVN+G Sbjct: 252 LEHYSGERPLFDLHNVEDEIQKALARRVSLKSGGYLIIDQTEAMTTIDVNTGGFVGARNF 311 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G+I++DFIDME ++ V + +++L +D ++ Sbjct: 312 DDTIFKTNLEAAQTIARQLRLRNLGGIIIIDFIDMENVEHRDMVLDEFQKALARDHTKMT 371 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C G G +++ +V ILR + Q+ Sbjct: 372 VNGFTALGLVEMTRKRTRESLAHLLCEPCPTCDGRGEVKTARTVCYEILRELLREARQFN 431 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A V +V+ L+++ ++ G I++ + + F I Sbjct: 432 AREFRVLAAPNVIDLFLDEESQSLAMLSDFIGKQISLHPEASYSQEQFDI 481 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ + LI+ + +ETRV ++ V+EL E + I GNIYL +V RV P +Q+AF+D Sbjct: 1 MSIEFLINFT-PQETRVAIVEQGVVQELHVERTASRGIVGNIYLGRVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G R FL +I D Sbjct: 60 IGLERTAFLHVADIWSD 76 >gi|145641361|ref|ZP_01796940.1| ribonuclease G [Haemophilus influenzae R3021] gi|145273904|gb|EDK13771.1| ribonuclease G [Haemophilus influenzae 22.4-21] Length = 491 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERTR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|229846795|ref|ZP_04466902.1| ribonuclease G [Haemophilus influenzae 7P49H1] gi|229810284|gb|EEP46003.1| ribonuclease G [Haemophilus influenzae 7P49H1] gi|309973035|gb|ADO96236.1| Ribonuclease G [Haemophilus influenzae R2846] Length = 491 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERTR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|304310268|ref|YP_003809866.1| Ribonuclease G (RNase G) [gamma proteobacterium HdN1] gi|301796001|emb|CBL44205.1| Ribonuclease G (RNase G) [gamma proteobacterium HdN1] Length = 492 Score = 252 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 125/400 (31%), Positives = 211/400 (52%), Gaps = 3/400 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I E++ ++VQ+ K+ G KGA +TTYLS+ RY V MP+T R Sbjct: 90 NIGELVYEGHSIVVQVTKDMIGTKGARLTTYLSIPSRYLVYMPHTDHIGVSQRIEQEEER 149 Query: 229 RKN---LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + ++ + G+E G ILRTA + ++ D E+L RLW ++R + Sbjct: 150 ERLRSTMEHVLEGVEDVDKKGFILRTAAEGADEDSLRHDVEFLCRLWRSIRARIHMATPV 209 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 +V+ + L R +RD C + +I + + + A +F + MP ++ Y PI Sbjct: 210 SIVHSDLPLSLRILRDEVCPTVDKIRIDSRETHVRALEFTRDFMPHVESLIEHYPGERPI 269 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ +V L S GY+II+QTEA+ +IDVN+G +E+T +TNLE Sbjct: 270 FDLYGVENEIQKALGRQVQLKSGGYLIIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNLE 329 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+ IARQLRLR+L G+I++DFIDMEE + V + ++ L++D A+ ++ +S GL+ Sbjct: 330 AAQAIARQLRLRNLGGIIIIDFIDMEEVDHQHQVLRIFEKMLERDHAKTKITQVSELGLV 389 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EM+R+R R S+ + C C+G G +++ ++ I R + Y A + +V Sbjct: 390 EMTRKRTRESLERVLCEPCPTCQGRGTVKTAETLCYEIFREILRQSRAYEAESFLVIASQ 449 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV L++++ A + + E G +I + + + F + Sbjct: 450 AVVDRLVDEESANVADLEQFIGRTIRFQVESFYSPEHFDV 489 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + ETR ++ + V+E+ E K+ + G+I+ KV RV P +QAAFVD Sbjct: 1 MNEEILINVT-PMETRAAIVENGVVQEIFVERSVKRGLVGSIFKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHAKDI 73 >gi|145629572|ref|ZP_01785370.1| ribonuclease G [Haemophilus influenzae 22.1-21] gi|145632904|ref|ZP_01788637.1| ribonuclease G [Haemophilus influenzae 3655] gi|145639054|ref|ZP_01794662.1| ribonuclease G [Haemophilus influenzae PittII] gi|260582682|ref|ZP_05850470.1| ribonuclease G and E [Haemophilus influenzae NT127] gi|144978415|gb|EDJ88179.1| ribonuclease G [Haemophilus influenzae 22.1-21] gi|144986560|gb|EDJ93126.1| ribonuclease G [Haemophilus influenzae 3655] gi|145272026|gb|EDK11935.1| ribonuclease G [Haemophilus influenzae PittII] gi|260094248|gb|EEW78148.1| ribonuclease G and E [Haemophilus influenzae NT127] gi|309751010|gb|ADO80994.1| Ribonuclease G [Haemophilus influenzae R2866] Length = 491 Score = 252 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|301170105|emb|CBW29709.1| ribonuclease G [Haemophilus influenzae 10810] Length = 491 Score = 252 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|238751399|ref|ZP_04612892.1| Ribonuclease G [Yersinia rohdei ATCC 43380] gi|238710457|gb|EEQ02682.1| Ribonuclease G [Yersinia rohdei ATCC 43380] Length = 466 Score = 252 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 53 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 112 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 113 AAHVGVSQRIESEAERDR-LKKTVAEYCDEQG-GFIIRTAAEGIGEEELAADAAFLKRLW 170 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + + +F +P Sbjct: 171 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTFDLLVEFTSEYIPEM 230 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 231 TEKLELYAGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 290 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 291 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 350 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 351 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 410 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 411 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 463 >gi|85058137|ref|YP_453839.1| ribonuclease G [Sodalis glossinidius str. 'morsitans'] gi|84778657|dbj|BAE73434.1| ribonuclease G [Sodalis glossinidius str. 'morsitans'] Length = 489 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 119/413 (28%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K + I E+++ Q ++V++VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGEEQKNFQVRDIAELVRQGQDIMVKVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + + G I+RTA E+ +D +L RLW Sbjct: 136 AAHVGVSQR--IDSEAERERLKQIVAQYCDEQGGFIIRTAAEGIGSEELSQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I V + +F +P Sbjct: 194 TKVMERKRRNQTRYRLYGELALAQRILRDFAGAALDRIRVDSRLTHELLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ L + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLEYYSGKQPIFDLYDVENEIQRLLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ SV I+R + Sbjct: 374 KTGINGFSQLGLVEMTRKRTRESIERVLCSECPTCHGRGTVKTIESVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ + V L + + + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASAAVGEALKSDESHALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|145636058|ref|ZP_01791728.1| ribonuclease G [Haemophilus influenzae PittHH] gi|145270580|gb|EDK10513.1| ribonuclease G [Haemophilus influenzae PittHH] Length = 491 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERTR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSKYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|86157124|ref|YP_463909.1| ribonuclease G [Anaeromyxobacter dehalogenans 2CP-C] gi|85773635|gb|ABC80472.1| RNAse G [Anaeromyxobacter dehalogenans 2CP-C] Length = 868 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 146/606 (24%), Positives = 256/606 (42%), Gaps = 13/606 (2%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 ++ I +A + + + E ++ E + + Sbjct: 266 EKDRIQAPARDAAREARGDRERDRGDRRRDERGRRDGREGRDGREGREGREGREGREGRD 325 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 E+ K + IQ+++K Q ++VQ+ K+ G KGA +T+++SL GR+ V M Sbjct: 326 RNGRNGREEKRTKEAKN--IQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFM 383 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 P R + R+ P G G I+RT + +++ D +L++ Sbjct: 384 PTVDHIGISRRIEKDGERRR--LREIVDRMRPEGTGFIVRTVAENVEAAKLEADIRFLIQ 441 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W+++ AP L++ + +LI RA RDL+ ++ ++++ Y F+ P Sbjct: 442 VWNDIIRTKDKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERILRFVHDQAP 501 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + Y PIF GIE +L Q +V L S GY+I++Q EAL +IDVNSGR Sbjct: 502 HLESQIESYLGEEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYV 561 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + +E+T + N+EAA+EI QLRLR++ G+I++DFIDM++ +N V K L+++L +D Sbjct: 562 GKKNLEETITKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRD 621 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 +A+ V IS GL+EM+R+R+R SV + C YC G G+++S+ ++A I R + Sbjct: 622 KAKTNVLKISELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAYEIFREIRRE 681 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----E 566 + ++V++H +V L +R + RF +I V + F I E Sbjct: 682 APHFPEPVLVVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQEQFDIYGRQE 741 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + G GS + + E + Sbjct: 742 RAEQGGGAGGGGGGGGSGGGGGGGGSGSGGGGGGRDRDRGRGRDRRGGRGERNDRGERSD 801 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R R +D ++ D + + + E E G Sbjct: 802 RNERNDRGER-----SDRNEKNDRGDRTERGERNERTERGQREDRGERGGERAEGGEPRT 856 Query: 687 TENYDV 692 Sbjct: 857 APEAPA 862 Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 4/140 (2%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I+A+ ETRV ++ + + E E + +K I GNIY +V RV P +QAAFVD G Sbjct: 7 LVINAAGA-ETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLE 65 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 + FL ++ Y FS+ L + + A+ + ++ + A Sbjct: 66 KAAFLYVGDV---YGDPDFSEEFELTEGEHRAEVTDVPSEQEAEEAELRARTAPAEPAAA 122 Query: 125 PIANFSQETEEESIISANND 144 P T + S + + Sbjct: 123 PAGVEGSPTVDVSPAAVPAE 142 >gi|256831109|ref|YP_003159837.1| ribonuclease, Rne/Rng family [Desulfomicrobium baculatum DSM 4028] gi|256580285|gb|ACU91421.1| ribonuclease, Rne/Rng family [Desulfomicrobium baculatum DSM 4028] Length = 490 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 163/422 (38%), Positives = 249/422 (59%), Gaps = 3/422 (0%) Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 A + V++V + + +Q+V+K Q +LVQ+VKE G+KGA +T Sbjct: 64 NYGAEKNGFLQVDEVHPEYYQGDVPSRGKYPPLQKVLKPGQEVLVQVVKEPTGSKGAFLT 123 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 TYLS+ GRY VL P + ISRKI + +R LKE+ L++ G+GVI+RT S++ Sbjct: 124 TYLSIPGRYFVLTPGREQLG-ISRKIEDEKERDRLKEVVEELKLDEGLGVIVRTVSESQS 182 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 K + RD ++L RLW +R+ ++S +P L+YEE +L RAIRD DI+E V ++ Sbjct: 183 KSSLSRDLQFLKRLWKEIRKKGISSESPALIYEEKDLAFRAIRDYLTPDIAECWVDDDET 242 Query: 318 YREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 ++ DF L+ P ++ E ++ R IE QL + V LPS G ++I+ T Sbjct: 243 AKQITDFAALIFPRRKTFIKVHSETERTLYERFRIEAQLQKIFSRSVNLPSGGQLVIDHT 302 Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 EAL +ID+NSG+ E ++ AL+TN+EAA+EI QL LRD+ G IVVDFI+M++ K+ Sbjct: 303 EALTAIDINSGKIGGEKNFKEMALRTNIEAAQEIPNQLMLRDIGGQIVVDFIEMKDGKHI 362 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 R VEK L+++LK DRAR +G IS FGLLE+ RQR+ +S L + + C +C GAG R+ Sbjct: 363 REVEKVLRQALKVDRARTDIGRISKFGLLEIVRQRLGTSALSGSLEPCPHCSGAGTRRNL 422 Query: 497 SSVALSILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 ++ L+ + L + + T +D++ YL+N+KR ++E+E FG I V+ Sbjct: 423 EWRSMQALKDIYRELRKDKSFEPFTYKTDADLMQYLVNRKREKLMEFEQTFGRKIFVMPT 482 Query: 556 IE 557 Sbjct: 483 ET 484 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 49/86 (56%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM I E+ V ++ D V E E H+ + KGNIY A++ V+ +LQAAF++YG Sbjct: 7 RKMFISVLPGEQVEVAIMEDGVVCEYYVEMLHQSKTKGNIYKARIHNVDQALQAAFINYG 66 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQA 88 ++GFL E+HP+YYQ R Sbjct: 67 AEKNGFLQVDEVHPEYYQGDVPSRGK 92 >gi|149378039|ref|ZP_01895763.1| Ribonucleases G and E [Marinobacter algicola DG893] gi|149357694|gb|EDM46192.1| Ribonucleases G and E [Marinobacter algicola DG893] Length = 493 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 236/486 (48%), Gaps = 8/486 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + G++ + A E + I A Sbjct: 11 PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVDIGLERAAFIHA 70 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V S + P+ K I+ +++ Q L+VQ+ K+ G KGA +TT LS Sbjct: 71 SDVVTSQQPANE------APETPKTVPDIRTLLREGQSLVVQVTKDPIGTKGARLTTQLS 124 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRK--NLKEIARGLEVPAGMGVILRTAGASRTKI 259 + RY V MP R + +L E E G I+RTA + ++ Sbjct: 125 IPSRYLVFMPGVRHVGISQRIEDETERSRLKSLVEEGAAAEPDISGGYIIRTAAEAASED 184 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 ++ D YL RL + E S AP +VY++ L R IRDL ++ + + ++ Sbjct: 185 DLIGDMTYLHRLNQAIEERITRSQAPSVVYQDLPLFIRTIRDLIRPQTEKVRIDSRESHQ 244 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +F++ + ++ V Y PIF +E ++ +V L S GYVII+QTEA+ Sbjct: 245 RVMEFVEEFVTEFSDKVEYYPGERPIFDLYSVEDEIQKALSRKVQLKSGGYVIIDQTEAM 304 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +ID+N+G +E+T +TNLEAA I+RQLRLR+L G+I++DFIDME+ ++ R V Sbjct: 305 TTIDINTGAFVGHRNLEETIFKTNLEAARAISRQLRLRNLGGIIIIDFIDMEDSEHQRQV 364 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + L++ L++D A+ ++ +S GL+EM+R+R S+ + + C C G G++++ +V Sbjct: 365 HRMLEKMLERDHAKTKITGVSELGLVEMTRKRTTESLGQILCEPCPICDGRGFLKTSETV 424 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 + R + Y A + +V VV LL+++ + + E +I + + Sbjct: 425 CYEVFREILRVNRAYDAESYLVMASQSVVDRLLDEESDNVADLETFISKTIRFQVEPFYS 484 Query: 560 DKLFYI 565 + + + Sbjct: 485 QEQYDV 490 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV ++ + ++E E +K I GNIY KV RV P ++AAFVD Sbjct: 1 MSEEILINVT-PVETRVALVENGMLQEAYIERTSRKGIVGNIYKGKVVRVLPGMEAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ ++ Sbjct: 60 IGLERAAFIHASDV 73 >gi|312889812|ref|ZP_07749358.1| ribonuclease, Rne/Rng family [Mucilaginibacter paludis DSM 18603] gi|311297738|gb|EFQ74861.1| ribonuclease, Rne/Rng family [Mucilaginibacter paludis DSM 18603] Length = 516 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 148/575 (25%), Positives = 245/575 (42%), Gaps = 61/575 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++IDA+ T + +L+D ++ EL E Sbjct: 1 MVKELIIDATPGGAT-IALLQDKQLVELHKEQISNNY----------------------- 36 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +I+ L K I + A D D + Sbjct: 37 ---------AVGDIY-------------LGKIKKIMPGLNAAFVDVGYEKDAFLHYLDLG 74 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +V + S++ S S D E++ G I EV+ Q++ Sbjct: 75 PQVLSLLKLSKQVRGGSYQSKLLDNFKLEEEINKGGK------------ISEVLTKNQLI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 VQI KE KG +++ LS+AGRY +L+P S+ +IS+KI + +R L++I ++ Sbjct: 123 PVQIAKEPISTKGPRLSSDLSIAGRYVILVPF-SETISISKKIKSNTERTRLRKIIESIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RT + E+++D L+ W++ ++ + E + +R Sbjct: 182 PK-NFGVIIRTVSEGKGVTELQQDLIDLISKWESFITRLPSTEPAKKILGEIDRTSTILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL D I V+ + E + ++ + P IV+ ++ PIF GI+ Q+ Sbjct: 241 DLLNPDFQNIYVNDSSIFEEVRTYVHQISPDLESIVKMHKHKEPIFEHYGIDKQIKGAFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEEIARQLRLRDL 419 V L Y++I TEAL IDVNSG T ++T A Q N EAA+EIARQLRLRD+ Sbjct: 301 KTVNLAGGAYLVIEHTEALHVIDVNSGNRTANKENQETNAFQVNKEAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G++V+DFIDM + N + + LKE + DRA+ + S FGL++++RQR+R + Sbjct: 361 GGIVVIDFIDMHKPNNRKDLFDYLKEEMALDRAKHTILPPSKFGLVQITRQRVRPEMNIV 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T++VC C G G IR + I + L + NI + H + Y+ Sbjct: 421 TSEVCPTCNGTGTIRPTILLLDDIENNFNFILTEQNEKNITLCVHPYIEAYIKKGIYNRQ 480 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +++ ++ I V F+ + Sbjct: 481 MKWFFKYNQWIKVTSNPSYQITEFHFLSSKGEEIK 515 >gi|329295758|ref|ZP_08253094.1| ribonuclease G [Plautia stali symbiont] Length = 489 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGNEKKNFIVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK + G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKAVVAAYCDDLG-GFIIRTAAEGIGAEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + L+Y E L +R +RD + I V +F +P Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRVLRDFAGAALDRIRVDSRLTCDLLVEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 ASKLELYNGKPPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + R V L+ +L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNDDHRRRVLHSLESALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G +++ +V I+R + Sbjct: 374 KTSINGFSALGLVEMTRKRTRESIEHVLCADCPVCQGRGSLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + + +V+ V L + + + E E G + V + + F + Sbjct: 434 AYDSDSFLVYVSPAVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYEGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGMDKAAFLHASDIMP 75 >gi|238793753|ref|ZP_04637375.1| Ribonuclease G [Yersinia intermedia ATCC 29909] gi|238726994|gb|EEQ18526.1| Ribonuclease G [Yersinia intermedia ATCC 29909] Length = 466 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 53 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 112 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 113 AAHVGVSQRIESEAERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 170 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F +P Sbjct: 171 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 230 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 231 TAKLELYAGKQPIFDLYDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 290 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 291 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 350 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 351 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 410 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 411 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 463 >gi|53802441|ref|YP_112910.1| ribonuclease G [Methylococcus capsulatus str. Bath] gi|53756202|gb|AAU90493.1| ribonuclease G [Methylococcus capsulatus str. Bath] Length = 484 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 115/396 (29%), Positives = 204/396 (51%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+ + + Q + VQ+VK+ G KGA ++T +S+ Y V MP + R Sbjct: 86 IEAIFREGQEIAVQVVKDPIGTKGARLSTEISVPSVYEVYMPFSKTSGVSQRIECEAERA 145 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + G I RT+ + ++ D +L++LW+++ + + L++ Sbjct: 146 RLRACVEAFQREHGTGGFIARTSAEGVDESLLRADMLFLLKLWNSIAQRIKTAKVKVLLH 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 E+ L R +RDL + +I V + + F + +P A ++ Y P+F Sbjct: 206 EDLPLSMRVLRDLRRTRVDKIRVDSRETHARLTKFAREFVPEIAPMIEHYAGERPLFDLY 265 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 G+E ++ + VTL S GY+I +QTEA+ ++DVN+G +E+T +TNLEAA+ Sbjct: 266 GVEEEIQKALERRVTLKSGGYLIFDQTEAMTTVDVNTGAFVGGRNLEETIFKTNLEAAQA 325 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM ++ + V L L++D A+ + +S GL+EM+R Sbjct: 326 IARQLRLRNLGGIIIIDFIDMRDEDHKAQVLHALSRHLERDPAKNTISEVSPLGLVEMTR 385 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ + + C C G G +++ + L I R + + QY ++V ++VV Sbjct: 386 KRTRESLEQVLCEPCPACGGRGVLKTAETTCLDIFREIIREVRQYQVQELLVLASNEVVE 445 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 LL+++ T+ E E+ GV I + + + + Sbjct: 446 RLLDEEADTLSELESFIGVPIKFRAESQYNQEQYDV 481 >gi|134300375|ref|YP_001113871.1| ribonuclease [Desulfotomaculum reducens MI-1] gi|134053075|gb|ABO51046.1| RNAse G [Desulfotomaculum reducens MI-1] Length = 559 Score = 251 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 132/452 (29%), Positives = 230/452 (50%), Gaps = 3/452 (0%) Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + VED + + + I +++K Q ++VQIVKE G KG VTT+++ Sbjct: 63 EKNAFLYVEDAQPSRNPEAANQSGYPVNIADILKQGQEIIVQIVKEPIGTKGPRVTTHIT 122 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP R T + + P GMGVI+RT + E Sbjct: 123 LPGRYLVLMPTVDYIGISRRIETEKERER--LKELANRVKPEGMGVIVRTVAEGVDEEEF 180 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 +D L +LW ++ A N AP+L++ + L++R +RD++ +D+ + V Y + Sbjct: 181 LQDIILLTKLWRRIQNCAANCSAPNLLHRDVELVQRMLRDVFSEDVDRLTVDSRSEYEKT 240 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + + ++ ++ ++ IF GI +++ + +V L Y++I+Q EAL + Sbjct: 241 LEILDMIDSRL-KLKVFLDERENIFEDYGISTEMEKALKRKVWLKCGAYLVIDQAEALTA 299 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G+ +EDT L+TNL+AA EIARQLRLR++ G+I+VDFIDM E+++ V Sbjct: 300 IDVNTGKFVGSTTLEDTVLKTNLDAAVEIARQLRLRNIGGIIIVDFIDMVEEEHRSQVLS 359 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E +KKD+ + + I+ GL+EM+R+++R S+ E K C YC+G G + S+ +V + Sbjct: 360 TLEEEIKKDKTKTNILGITQLGLVEMTRKKVRPSLAEVVQKSCPYCEGRGKVLSEETVGI 419 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + + + Q A I+V + V ++ A + E E + G ++ + + Sbjct: 420 KLKNQIYQLARQTLADTILVEANPVVAARIIGAGGANLRELEQKTGKNLYIRGSATHHLE 479 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 I+ S + + + V + + Sbjct: 480 QVTIKPLSDQEEIYSQTVPVKAGEIIEVKVEE 511 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I+ EETRV VL D + E+ E H +++ GNI+ KV V P +QAAFVD Sbjct: 1 MLKEIVINV-QEEETRVAVLEDRVLMEVYIERSHNQRLVGNIFKGKVENVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL + P Sbjct: 60 IGLEKNAFLYVEDAQP 75 >gi|145634339|ref|ZP_01790049.1| ribonuclease G [Haemophilus influenzae PittAA] gi|148825893|ref|YP_001290646.1| ribonuclease G [Haemophilus influenzae PittEE] gi|229844189|ref|ZP_04464330.1| ribonuclease G [Haemophilus influenzae 6P18H1] gi|145268319|gb|EDK08313.1| ribonuclease G [Haemophilus influenzae PittAA] gi|148716053|gb|ABQ98263.1| ribonuclease G [Haemophilus influenzae PittEE] gi|229813183|gb|EEP48871.1| ribonuclease G [Haemophilus influenzae 6P18H1] Length = 491 Score = 251 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VK+ G KGA +TT ++L R+ V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRHLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|303246708|ref|ZP_07332986.1| ribonuclease, Rne/Rng family [Desulfovibrio fructosovorans JJ] gi|302492048|gb|EFL51926.1| ribonuclease, Rne/Rng family [Desulfovibrio fructosovorans JJ] Length = 486 Score = 251 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 163/418 (38%), Positives = 243/418 (58%), Gaps = 3/418 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + ++ + IQ+ +K Q LLVQ+VKE G+KGA +TT Sbjct: 69 AERNGFLQIDEVHPEYYQIVHAGERRPKYPPIQKALKKNQELLVQVVKEPTGHKGAFLTT 128 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSL GRY VL P + +SRKI + +RK LKE GL++ G+G+I+RTA S++K Sbjct: 129 YLSLPGRYFVLTPGREQRG-VSRKIEDEAERKRLKEAISGLKLEEGLGIIVRTAALSQSK 187 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 ++RD YL RLW VR+ + P L+Y+E +L RA+RD ++ EI V + Sbjct: 188 TALERDLSYLKRLWKEVRQRGTTAETPSLIYQELDLSSRAVRDYLTDEVGEIWVDEPETA 247 Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 + L+ P IV+Q+ + P++ R + Q++ L+ EVTLPS G + + E Sbjct: 248 GRVAEMSSLIYPRRPSIVKQHTDMDVPLWDRFNLRKQIEQLYGREVTLPSGGVLAFDHAE 307 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL ++D+NSG+ E + AL+TN+EAAEE+ARQLRLRD+ G +V+DFI+M+++K+ Sbjct: 308 ALTAVDINSGKIGGESNFREMALKTNVEAAEEVARQLRLRDIGGQVVIDFIEMKDRKHVA 367 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK L+ + K DRAR VG IS FGLLE+ RQR+ SS L T++ C CKG+G R+ Sbjct: 368 EVEKTLRAAFKSDRARTDVGRISRFGLLEIVRQRLGSSALSITSETCPCCKGSGQRRNHE 427 Query: 498 SVALSILRSVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 AL++L+ + L + + + ++ LYLLN KRA + E F I V Sbjct: 428 WQALTVLKDIYRQLRKDSGQETVTAKVSEELALYLLNYKRARLSAMEEEFKKKIVVTA 485 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 49/81 (60%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 KM I E+ V V D + E E H+ + +G+IY ++ ++P+LQAAF++YG Sbjct: 10 KMFISVLPGEQVEVAVAEDGLLLEYYVEMVHQAKTRGHIYKGRIHNIDPALQAAFINYGA 69 Query: 64 NRHGFLPFLEIHPDYYQIPFS 84 R+GFL E+HP+YYQI + Sbjct: 70 ERNGFLQIDEVHPEYYQIVHA 90 >gi|262164137|ref|ZP_06031876.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio mimicus VM223] gi|262027665|gb|EEY46331.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Vibrio mimicus VM223] Length = 385 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 119/383 (31%), Positives = 195/383 (50%), Gaps = 2/383 (0%) Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q+VK+ G KGA +TT ++L RY V MP S +S++I + +R+ LK + Sbjct: 2 QVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESEEERERLKAVVNHYCDE 60 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 G G I+RTA + E+ +D +L RLW V E ++Y E L +R +RD Sbjct: 61 HG-GFIIRTAAEGANEKELAQDAAFLKRLWSKVIERRGKYKNRSMLYGELGLAQRILRDF 119 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 ++++I++ + + K+F +P + Y PIF E ++ + + Sbjct: 120 VGTELTKILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERK 179 Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 V L S GY+II+QTEA+ +ID+N+G +E+T TN+EA + IARQLRLR+L G+ Sbjct: 180 VELKSGGYLIIDQTEAMTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGI 239 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 I++DFIDM ++ + V L+ +L KDR + + + GL+EM+R+R R S+ Sbjct: 240 IIIDFIDMASDEHRKRVLTSLEAALVKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCS 299 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 C C+G G +++ SV ILR + Y A +V+ V L ++ + E Sbjct: 300 TCPTCEGRGSVKTVESVCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAEL 359 Query: 543 EARFGVSINVVIGIELADKLFYI 565 E G + + + F + Sbjct: 360 EVFIGKEVRIQAEPLYNQEQFDV 382 >gi|212702391|ref|ZP_03310519.1| hypothetical protein DESPIG_00407 [Desulfovibrio piger ATCC 29098] gi|212674190|gb|EEB34673.1| hypothetical protein DESPIG_00407 [Desulfovibrio piger ATCC 29098] Length = 721 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 165/400 (41%), Positives = 245/400 (61%), Gaps = 2/400 (0%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 P K K+ IQ+V+K Q +LVQ+VKE GNKGA +TT+LSLAGR+ VL P + Sbjct: 323 HHEPSKGKKFPPIQKVLKPGQEVLVQVVKEPTGNKGAFLTTWLSLAGRFLVLTPGQEQIG 382 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 +SRK+ + +R L+E+ G++ G+GVI+RT A TK +K D +YL R+W ++R+ Sbjct: 383 -VSRKVDSDEERTRLREMMNGIDPGQGLGVIVRTVSAGTTKTTLKNDLQYLKRVWKDIRK 441 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 A AP L+Y+E L +RA+RD D+ EI V E+ ++ + LL P +VR Sbjct: 442 KATEVSAPALIYQEPGLPQRAVRDYLTDDVCEIWVDNEEVADSIRETVSLLFPRKKELVR 501 Query: 338 QY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + + P++ R + QLD ++ EVTLPS G ++ +QTEAL+++D+NSG+ + + E Sbjct: 502 LHTDVRMPLWERFSLRRQLDQIYSREVTLPSGGRLVFDQTEALMAVDINSGKISGKVNFE 561 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 A +TN+EAAE IARQL+LRD+ G +V+DFI+M +KK+ VEK L+ ++K DRAR V Sbjct: 562 SMAHRTNMEAAEAIARQLKLRDIGGQVVIDFIEMRDKKHVLEVEKTLRTAMKNDRARHDV 621 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G +S+FGLLE+ RQR SS L T + C +C G G R+ AL LR + L + Sbjct: 622 GRMSSFGLLELVRQRTGSSALSITMEPCPFCGGTGQRRNLEWQALQALREMRRALRTHGG 681 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 + T ++ LYLLN KR ++ + E FG + + I Sbjct: 682 DKYVFETTRELGLYLLNHKRDSLRDMEQDFGKCLEISIRP 721 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 46/76 (60%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +M I E+ V + + R++E + H++++KGNIY + ++ +LQAAFV YG Sbjct: 244 RRMFISVLPGEQVEVAIAEEGRLQEYYLDMFHQRKLKGNIYKGVIHNIDTNLQAAFVSYG 303 Query: 63 GNRHGFLPFLEIHPDY 78 ++GFL EIHP+Y Sbjct: 304 AGKNGFLQIDEIHPEY 319 >gi|37527914|ref|NP_931259.1| ribonuclease G [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787350|emb|CAE16439.1| ribonuclease G (RNase G) (cytoplasmic axial filament protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 489 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 199/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGEEQKNFHVKDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK I G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEEERNR-LKNIVADYCDEHG-GFIIRTAAEGVGDEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +V + +Y E L R +RD + I V + + ++F++ +P Sbjct: 194 SKVMERKKRNVTKNKLYGELALAHRILRDFAGAALDRIRVDSRLTFTQLQEFIREYIPKM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TARLELYNGNQPIFDLFDVENEIQRALDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L++ L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNSEEHRRRVLASLEQVLSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C CKG G ++S +V I+R + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHILCGDCPTCKGRGTVKSVETVCYEIMREIVRVHR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +++ V L ++ + E E G + V + + F + Sbjct: 434 AVDADRFLIYASPAVSEALKGEESHALAEVEIFVGKQVKVQTEQLYSQEQFDV 486 >gi|296136987|ref|YP_003644229.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12] gi|295797109|gb|ADG31899.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12] Length = 501 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 119/401 (29%), Positives = 207/401 (51%), Gaps = 4/401 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+++I Q L+VQ++K+ KGA +TT +SLAGR V +P + IS+KI Sbjct: 99 QPIEKLIYEGQTLMVQVLKDPINTKGARLTTQISLAGRMLVHLPQDNHIG-ISQKIDGAE 157 Query: 228 DRKNLKEIARGL---EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R L+E L + G I+RT + E+ D YL + W +++ A + Sbjct: 158 LRTALRERMSALLAADAGDSQGFIVRTNAEDASDAELAEDIAYLRKTWAAIQQRAHVTSP 217 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 L+Y+E +L +R +RDL + + + + + F MP + ++ Y P Sbjct: 218 SALIYQELSLAQRVLRDLVSDATRSVQIDSRENFELLQGFAAEYMPRVSSRLQLYRGERP 277 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F + ++ +++ V L S GY+II+QTEA+ +IDVN+G +DT +TNL Sbjct: 278 LFETANVDEEIERALGRRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGARNFDDTIYRTNL 337 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EA + IARQLRLR+L G+I++DFIDM ++ +V +L++SL +D+ +V V S GL Sbjct: 338 EATQAIARQLRLRNLGGIIIIDFIDMHNAQHRAAVLDELRKSLARDKVKVTVSGFSQLGL 397 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +E++R+R R S+ + C C G G +++ +V ILR + Q+ + Sbjct: 398 VELTRKRTRDSLAHMLLEPCPTCGGLGQVKTARTVCYEILREILREAKQFNPREFRIVGA 457 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +DV+ L ++ + G +++ + + + + I Sbjct: 458 ADVIDLFLEEESQHLASLSDFIGKPVSLQVEPAFSQQQYDI 498 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI+ + +ETRV ++ V+EL E ++ + GNIYL KV RV P +Q+AF+D G Sbjct: 8 ILINIT-PQETRVALVAHAAVQELHIERSLERGLVGNIYLGKVARVLPGMQSAFIDIGLE 66 Query: 65 RHGFLPFLEI 74 R FL ++ Sbjct: 67 RTAFLHVADL 76 >gi|294341160|emb|CAZ89561.1| Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) [Thiomonas sp. 3As] Length = 501 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 114/400 (28%), Positives = 203/400 (50%), Gaps = 2/400 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+++I Q L+VQ++K+ KGA +TT +SLAGR V +P + + + Sbjct: 99 QPIEKLIYEGQTLMVQVLKDPINTKGARLTTQISLAGRMLVHLPQDNHIGISQKIDGAEL 158 Query: 228 DRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + L AG G I+RT + E+ D YL + W +++ A + Sbjct: 159 RTALRERMTALLATDAGDAQGFIVRTNAEDASDAELAEDIAYLRKTWAAIQQRAHVTSPS 218 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y+E +L +R +RDL + + + + + F MP + ++ Y P+ Sbjct: 219 ALIYQELSLAQRVLRDLVSDATRSVQIDSRENFELLQSFAAEYMPRVSGRLQLYRGERPL 278 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F + ++ +++ V L S GY+II+QTEA+ +IDVN+G +DT +TNLE Sbjct: 279 FETANVDEEIERALGRRVDLKSGGYLIIDQTEAMTTIDVNTGGFVGARNFDDTIYRTNLE 338 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 A + IARQLRLR+L G+I++DFIDM ++ +V +L++SL +D+ +V V S GL+ Sbjct: 339 ATQAIARQLRLRNLGGIIIIDFIDMHNAQHRAAVLDELRKSLARDKVKVTVSGFSQLGLV 398 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E++R+R R S+ + C C G G +++ +V ILR + Q+ + + Sbjct: 399 ELTRKRTRDSLAHMLLEPCPTCGGLGQVKTARTVCYEILREILREAKQFNPREFRIVGAA 458 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 DV+ L ++ + G +++ + + + + I Sbjct: 459 DVIDLFLEEESQHLASLSDFIGKPVSLQVEPAFSQQQYDI 498 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI+ + +ETRV ++ V+EL E ++ + GNIYL KV RV P +Q+AF+D G Sbjct: 8 ILINIT-PQETRVALVAHAAVQELHIERSLERGLVGNIYLGKVARVLPGMQSAFIDIGLE 66 Query: 65 RHGFLPFLEI 74 R FL ++ Sbjct: 67 RTAFLHVADL 76 >gi|119477376|ref|ZP_01617567.1| Ribonucleases G and E [marine gamma proteobacterium HTCC2143] gi|119449302|gb|EAW30541.1| Ribonucleases G and E [marine gamma proteobacterium HTCC2143] Length = 492 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 124/423 (29%), Positives = 209/423 (49%), Gaps = 7/423 (1%) Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 + D+ E V ++ I+ ++ Q L+VQ+VK+ G KGA +TT LS+ RY Sbjct: 69 HASDISVIDKEGVEQRNAEVADIRSLVWEGQSLIVQVVKDPIGTKGARLTTQLSVPSRYL 128 Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM-----GVILRTAGASRTKIEIK 262 V MP T R + + + A G ILRTA + E+ Sbjct: 129 VFMPQTQHIGISQRI--DDEIERARLKELVERCSAADPSYSKSGFILRTAAEGVGEDELM 186 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 D +Y RLW + AP ++YE+ L R +RDL D+ +I + ++ + Sbjct: 187 ADIKYFQRLWSALERKMKERPAPSVIYEDLPLYMRTMRDLVRPDMEKIRIDSKESFHNVL 246 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 F + +P + Y PIF +E ++ +V L S GY+II+QTEA+ +I Sbjct: 247 QFAEDYIPELKNRIEYYPGERPIFDLYAVEDEIQKALGRKVPLKSGGYLIIDQTEAMTTI 306 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVN+G +E+T +TNLEAA +ARQL++R+L G+I++DFIDM++ ++ R V + Sbjct: 307 DVNTGGFVGHRNLEETIFKTNLEAATSLARQLKVRNLGGIIIIDFIDMQDIEHRRQVHRT 366 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L+++++ D + + +S GL+EM+R+R R S+ + C C+ G I++ ++ Sbjct: 367 LEKAMEHDYTKTVISGVSELGLVEMTRKRTRESLEHIMCEECPVCEARGSIKTSETICYE 426 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 I R + Y ++V VV LL+++ A++ + E G SI + Sbjct: 427 IFREILREARAYDNDKLMVLASQSVVDRLLDEESASVADLEEFVGKSIQFQVESVYNQGQ 486 Query: 563 FYI 565 F + Sbjct: 487 FDV 489 >gi|317049779|ref|YP_004117427.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b] gi|316951396|gb|ADU70871.1| ribonuclease, Rne/Rng family [Pantoea sp. At-9b] Length = 489 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 195/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFSVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK + G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEAERER-LKAVVAAYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + L+Y E L +R +RD + I V +F +P Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRVLRDFAGAALDRIRVDSRLTCDLLVEFTGEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 ASKLELYSGKQPIFDLYDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + R V L+ +L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNDDHRRRVLHSLESALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C CKG G +++ +V I+R + Sbjct: 374 KTGINGFSALGLVEMTRKRTRESIEHVLCADCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPAVGEALKSDESHALAEVEIFVGKQVKVHVEPLYNQEQFDV 486 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G + FL +I P Sbjct: 60 IGLEKAAFLHASDIMP 75 >gi|238758353|ref|ZP_04619531.1| Ribonuclease G [Yersinia aldovae ATCC 35236] gi|238703476|gb|EEP96015.1| Ribonuclease G [Yersinia aldovae ATCC 35236] Length = 466 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY VLMP Sbjct: 53 HTECVAGDEQKNFNVRDIAELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVLMPG 112 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK+ G G I+RTA + E+ D +L RLW Sbjct: 113 AAHVGVSQRIESEAERER-LKKTVAAYCDEQG-GFIIRTAAEGIGEEELSADAAFLKRLW 170 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V+E ++ + +Y E L +R +RD + +I V + Y +F +P Sbjct: 171 TKVQERKKRNITKYKLYGEMALAQRVLRDFAGAALDKIRVDSKLTYDLLVEFTSEYIPEM 230 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 231 TAKLELYTGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 290 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 291 RNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSLEQALSKDRV 350 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 351 KTSINGFSQLGLVEMTRKRTRESIEHVLCNECPTCRGRGTVKSVETVCYEILREIVRVHH 410 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 411 AYDSDRFLVYASPAVGEALKGEESHALAEVEIFVGKLVKVQIEPLYNQEQFDV 463 >gi|68250132|ref|YP_249244.1| ribonuclease G [Haemophilus influenzae 86-028NP] gi|260580814|ref|ZP_05848640.1| ribonuclease G [Haemophilus influenzae RdAW] gi|68058331|gb|AAX88584.1| ribonuclease G [Haemophilus influenzae 86-028NP] gi|260092631|gb|EEW76568.1| ribonuclease G [Haemophilus influenzae RdAW] Length = 491 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VKE G KGA +TT ++L R+ V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRHLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|294792146|ref|ZP_06757294.1| ribonuclease G [Veillonella sp. 6_1_27] gi|294794011|ref|ZP_06759148.1| ribonuclease G [Veillonella sp. 3_1_44] gi|294455581|gb|EFG23953.1| ribonuclease G [Veillonella sp. 3_1_44] gi|294457376|gb|EFG25738.1| ribonuclease G [Veillonella sp. 6_1_27] Length = 475 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 145/457 (31%), Positives = 232/457 (50%), Gaps = 7/457 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + E ++ + + ++ + N + + D+ G + + ++ I Sbjct: 19 DEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + Q +LVQ+VKEE KGA VT +SLAGRY VL+P S+G IS+KIT+ + Sbjct: 79 LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRYMVLLP-YSEGMHISKKITD-ETMR 136 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + + V G G I+RTA A + EI RD EYL R W +V + + + +Y Sbjct: 137 SKLQELATPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + + R +RD +++ EIIV + G D + S V ++ D PIF + Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409 IE QL+ L ++ LPS G + I+ TEAL DVNS T + + A N EAA+E Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLRD+ G+IVVDFIDM++K++ + + K L K D+ + V IS+ GL+EM+R Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLGVQAKLDKMKTVVCGISSLGLVEMTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528 +R R + C C G GY+ S +V + I+R + E N+ + H +V Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKTNLEIEVHPEVA 436 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YL +A + + G I++V+ +++ + + + Sbjct: 437 QYLT---KAVLEDLGESIGRKISIVVNPQISREGYSL 470 Score = 84.3 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 4 KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+L++ EE R+ V+ + ++ + E + + ++Y V V +QAAFVD G Sbjct: 3 KILVNVMR-EEIRMAVIDEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61 Query: 63 GNRHGFL 69 G+++ +L Sbjct: 62 GSQNAYL 68 >gi|77166115|ref|YP_344640.1| ribonuclease E and G [Nitrosococcus oceani ATCC 19707] gi|254435914|ref|ZP_05049421.1| ribonuclease, Rne/Rng family [Nitrosococcus oceani AFC27] gi|76884429|gb|ABA59110.1| RNAse G [Nitrosococcus oceani ATCC 19707] gi|207089025|gb|EDZ66297.1| ribonuclease, Rne/Rng family [Nitrosococcus oceani AFC27] Length = 490 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 125/398 (31%), Positives = 215/398 (54%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I ++ Q +LVQ++K+ G KGA +TT +S+A RY V MP S + Sbjct: 90 PSITSLLSEGQEVLVQVIKDPIGTKGARLTTQISIASRYLVYMPEMSGTGVSLKIEDAEE 149 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 ++ +A L G I+RT + ++ D E+L +LW ++E + A + Sbjct: 150 RQRLKSLLASVLLEDNCGGYIIRTVAEGAVEEDLCTDMEFLHKLWRTIKERSQTVKAGSV 209 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 V+++ +L+ R +RD + + + V + Y + DF + +P + Y+ PIF Sbjct: 210 VHKDLSLVMRTMRDFVHERVERVRVDSRETYHKLVDFAERFIPDLLTTLECYQGERPIFD 269 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 GIE ++ +V L S GY+II+QTEA+ +IDVN+G +E+T +TNLEAA Sbjct: 270 LYGIEDEIQKSLGRKVQLKSGGYLIIDQTEAMATIDVNTGAFVGHRNLEETIFKTNLEAA 329 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 + I RQLRLR+L G+I++DFIDMEE+++ R V + L++ L+KD A+ + +S+ GL+EM Sbjct: 330 QAICRQLRLRNLGGIIIIDFIDMEEEEHKRQVLRALEKGLEKDHAKTHISEVSSLGLVEM 389 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ + + C C G +++ +V ILR + Q+ A +V +V Sbjct: 390 TRKRTRESLEQILCEPCPACSGRATVKTVETVCYEILREILREARQFEASQYLVIAAQEV 449 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V L++++ A++ E E+ G + + + F + Sbjct: 450 VDRLMDEESASVAELESFIGKPLKFQTELLYMREQFDV 487 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV V+ + V+EL E ++ GNIY +V R+ P +QAAFV+ Sbjct: 1 MSEEILINVT-PSETRVAVVENGVVQELYIERSSRRGWVGNIYKGQVNRILPGMQAAFVN 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHASDI 73 >gi|153003610|ref|YP_001377935.1| ribonuclease [Anaeromyxobacter sp. Fw109-5] gi|152027183|gb|ABS24951.1| ribonuclease, Rne/Rng family [Anaeromyxobacter sp. Fw109-5] Length = 740 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 137/508 (26%), Positives = 238/508 (46%), Gaps = 5/508 (0%) Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167 D + ++ EE + + + + K+ K Sbjct: 238 EKADAREARADREPKEGKGGERRRDREERGRRDGRDREAREGRERGNRNGHEREKRSKEP 297 Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 IQ+++K Q ++VQ+ K+ G KGA +T+++SL GR+ V MP R + Sbjct: 298 KNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGISRRIEKDSE 357 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 R+ P G G I+RT + +++ D +L+++W+ + AP L Sbjct: 358 RRR--LREIVDRMRPDGTGFIVRTVAENVEAGKLEADIRFLIQVWNEIIRTKDKVSAPAL 415 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 ++ + +LI RA RDL+ D+ ++++ Y F+ P + Y PIF Sbjct: 416 LHGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHEQAPHLESQIEYYRGEEPIFD 475 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 GIE +L Q +V L S GY+I++Q EAL +IDVNSGR + +E+T + N+EAA Sbjct: 476 AYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITKINVEAA 535 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 +EI QLRLR++ G+I++DFIDM++ +N V K L+++L +D+A+ V IS GL+EM Sbjct: 536 KEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISELGLVEM 595 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R+R SV + C+YC+G G+++S+ ++ I R + + + ++V+ H +V Sbjct: 596 TRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRREAVHFPEPVLVVNCHPEV 655 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 L +R + RF +I V + F I Q ++ + Sbjct: 656 ARILQGSEREELRYLMDRFNKTIQVKPQSGYHQEQFDI---YGRQERIDQPRDRERERGR 712 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDI 615 +E P + E+ Sbjct: 713 GRDRDRGGRGKSEEPATPPADAAGGEER 740 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 4/143 (2%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I+A+ ETRV ++ +N + E E + +K I GNIY +V RV P +QAAFVD G + Sbjct: 7 LVINAAGA-ETRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLD 65 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 + FL ++ Y FS+ L + + + + + S Sbjct: 66 KAAFLYVGDV---YGDPEFSEEFELTEGEHRVEVPEVPTEQEAEAEEARAQAVSSQPPAV 122 Query: 125 PIANFSQETEEESIISANNDVVS 147 A E + + Sbjct: 123 AAAPLEGEAVTPAPTPSPVPEGE 145 >gi|16273263|ref|NP_439504.1| ribonuclease G [Haemophilus influenzae Rd KW20] gi|1168735|sp|P45175|RNG_HAEIN RecName: Full=Ribonuclease G; Short=RNase G; AltName: Full=Cytoplasmic axial filament protein gi|1574815|gb|AAC23000.1| cytoplasmic axial filament protein (cafA) [Haemophilus influenzae Rd KW20] Length = 491 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 120/414 (28%), Positives = 205/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VKE G KGA +TT ++L R+ V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRHLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA +L+LR+L G+I++DFIDM+ ++ V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAHELQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVYH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|120437892|ref|YP_863578.1| ribonuclease G [Gramella forsetii KT0803] gi|117580042|emb|CAL68511.1| ribonuclease G [Gramella forsetii KT0803] Length = 531 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 130/561 (23%), Positives = 230/561 (40%), Gaps = 63/561 (11%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 K LI S +L+D ++ EL+ E + K G+IY+AK+ + P L AAFV+ G Sbjct: 22 KELIIRSEPSAVDFALLKDGKLIELNKEEDSTKFNVGDIYIAKIRKAVPGLNAAFVNVGY 81 Query: 64 NRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 + GFL + ++ P S LK + + ++ + D+ + Sbjct: 82 EKDGFLHYHDLGPQ-----VSSLLKFLKRVSTGKLKDYSLKNFSFEKDIDKNGSIADVLK 136 Query: 124 APIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + Q +E +Y + NR + + Sbjct: 137 SNQSLLVQIVKEPISTKGPRISSE--------------LSLPGRYIVLVPFSNRISVSQK 182 Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 I ++ + + + G ++ Sbjct: 183 IESKDEKERLKRLVKSIKPKGFGVIV---------------------------------- 208 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 RT + E+ RD + L+ W + + P V E N +RD++ Sbjct: 209 ------RTVAEGKKVAELDRDLQNLVGRWTAMCKKLYKPHHPSKVLGELNRASSLLRDIF 262 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 + I+V E Y + KD++ + P IV+ ++ PIF +SGIE Q+ + V Sbjct: 263 NDSFTSIVVDDETLYTQIKDYVSEIAPEKESIVKLHQSNQPIFEKSGIERQIKTSFGRTV 322 Query: 364 TLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 ++ Y++I TEA+ +DVNSG RS + EDTAL+ N+ +A EIARQLRLRD+ G+ Sbjct: 323 SMSKGAYLVIEHTEAMHVVDVNSGNRSNKSKNQEDTALEVNMISATEIARQLRLRDMGGI 382 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM + +N + + L+ + DRA+ ++ S FGL++++RQR+R + T + Sbjct: 383 IVVDFIDMNKAENRKKLYDHLRNEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIKTRE 442 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 G G I + S+ I + E L++ I + H + +L + ++ Sbjct: 443 DNP--NGNGEIEAPISLVNKI-KVDLEKLIKKEHKKITLSAHPFIAAFLTKGFPSPRSKW 499 Query: 543 EARFGVSINVVIGIELADKLF 563 + ++ + Sbjct: 500 FVDHKRWVKILPRDAYTYLEY 520 >gi|298530636|ref|ZP_07018038.1| ribonuclease, Rne/Rng family [Desulfonatronospira thiodismutans ASO3-1] gi|298510010|gb|EFI33914.1| ribonuclease, Rne/Rng family [Desulfonatronospira thiodismutans ASO3-1] Length = 488 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 159/404 (39%), Positives = 236/404 (58%), Gaps = 3/404 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + E P K + +Q+V+K Q LLVQ+VKE GNKGA +TTYLSL GRY VL P Sbjct: 83 EYYQAEVKPGKGHKYPPLQKVLKPGQELLVQVVKEPTGNKGAFLTTYLSLPGRYFVLTPG 142 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + ISRKI + +R+ LK I + L++ G+GVI+RT + K + RD ++L RLW Sbjct: 143 REQLG-ISRKIEDEKERERLKGIVQELKLDEGLGVIVRTVSEGQNKTSLSRDLQFLKRLW 201 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 VR+ + P L+YEE +L RA RD +D+SEI V E+ ++ ++F+ L+ P Sbjct: 202 KEVRKKGVAEKTPALIYEEKDLAFRAARDYLTEDVSEIWVDNEEVAQQVQEFVNLIFPRR 261 Query: 333 ARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++VR + + R +E Q+ + EV LPS G ++ +QTEAL+++D+NSG+ Sbjct: 262 KKMVRIHSDPEKTLMERFNLEKQISQIFSREVELPSGGRLVFDQTEALMAVDINSGKIGG 321 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 E + A +TNLEAAE I RQL LRD+ G IV+DFI+M +KK+ VEK L+ +LK D+ Sbjct: 322 EKDFREMAFKTNLEAAENIPRQLMLRDVGGQIVIDFIEMRDKKHISQVEKALRAALKSDK 381 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 AR V IS FGL+++ RQR+ S L + C +C+G G IR+ AL + + L Sbjct: 382 ARTDVSRISRFGLIQLVRQRLGISALSVIMESCRHCQGTGTIRNLEWQALQAQKEIYRLL 441 Query: 512 LQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + + + D+ +YLLN KR +V E +F + + Sbjct: 442 RRKSCPSPLEFPVDQDLAVYLLNHKRDKLVHMEQQFDNQVLITP 485 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 6/86 (6%) Query: 1 MAN------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54 M+N KM + E+ +V+ D ++E E + + KGNIY K+ ++ +L Sbjct: 1 MSNAQKRKRKMFLSVLPGEQIELVLALDGVIQEYYVEMLGQIKTKGNIYKGKIHNIDQAL 60 Query: 55 QAAFVDYGGNRHGFLPFLEIHPDYYQ 80 QAAF++YG ++GFL E+HP+YYQ Sbjct: 61 QAAFINYGTGKNGFLQVDEVHPEYYQ 86 >gi|197287438|ref|YP_002153310.1| ribonuclease G [Proteus mirabilis HI4320] gi|227358300|ref|ZP_03842641.1| ribonuclease G [Proteus mirabilis ATCC 29906] gi|194684925|emb|CAR47101.1| ribonuclease G [Proteus mirabilis HI4320] gi|227161636|gb|EEI46673.1| ribonuclease G [Proteus mirabilis ATCC 29906] Length = 489 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I +++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGEEQKKFNVRDIAQLVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA + EIK+D +L RLW Sbjct: 136 ASHVGVSQRIESEEERERLKR--LVEEYCDENGGFIIRTAAEGVGEHEIKQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + E + +Y E L +R +RD ++ I V + Y + ++F+ +P Sbjct: 194 NKIIERKKRNKTRIQIYGELALAQRILRDFAGAELDSIRVDSKLTYHQLQEFIGEYIPEL 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + ++ PIF G+E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TAKLELHQGNQPIFDLYGVESEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA++ IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLEETIFNTNVEASQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLASLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHK 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ VV L + + E E G + V + + + F + Sbjct: 434 TIDADRFLVYAAPAVVEALKGDESHALAEVEIFVGKQVKVQTELLYSQEQFDV 486 >gi|119773611|ref|YP_926351.1| ribonuclease G [Shewanella amazonensis SB2B] gi|119766111|gb|ABL98681.1| RNAse G [Shewanella amazonensis SB2B] Length = 502 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 125/396 (31%), Positives = 194/396 (48%), Gaps = 3/396 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP ++ R + Sbjct: 107 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVGVSQRIESEDERT 166 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + A V G I+RTA E+ +D +L R+W V E L+Y Sbjct: 167 R--LKEATLPFVDEDGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERR-KRKGSSLLY 223 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ L R +RD D+ I V + E K F + MP + + Y PIF Sbjct: 224 QDLALPVRIVRDFVGTDLDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLY 283 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E ++ +V L S GY+II+QTEA+ ++D+N+G +E+T TNLEA + Sbjct: 284 DVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 343 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM + + + V L +L DR + V S GL+EM+R Sbjct: 344 IARQLRLRNLGGIIIIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVEMTR 403 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ C CKG+GY+++ +V I R + Y A +V+ V Sbjct: 404 KRTRESLEHVLCGECPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHA 463 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L + + E E G I V + A + + Sbjct: 464 CLSGDEHHHVAELEVYIGKRIRVQMEPLYAQNKYDV 499 >gi|303327554|ref|ZP_07357995.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. 3_1_syn3] gi|302862494|gb|EFL85427.1| ribonuclease, Rne/Rng family [Desulfovibrio sp. 3_1_syn3] Length = 854 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 163/396 (41%), Positives = 240/396 (60%), Gaps = 2/396 (0%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 P K K+ IQ+V+K Q +LVQ+VKE GNKGA +TT+LSLAGR+ VL P + Sbjct: 456 HHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGNKGAFLTTWLSLAGRFLVLTPGQEQIG 515 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 +SRK+ N +R L+E+ G++ G+GVI+RT A TK +K D +YL RLW ++R+ Sbjct: 516 -VSRKVENDEERARLREMMNGIDPGQGLGVIVRTVSAGTTKTTLKNDLQYLKRLWRDIRK 574 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 A AP L+++E L +RA+RD D+ EI V E+ + +D + LL P +VR Sbjct: 575 KATEISAPALIHQEPGLSERAVRDYLTDDVCEIWVDNEEVAQGIRDTVSLLFPRKKDLVR 634 Query: 338 QY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + + ++ R + QLD ++ EV LPS G ++ +QTEAL+++D+NSG+ + + E Sbjct: 635 LHGDIRQSMWERFNLRRQLDQIYSREVLLPSGGRLVFDQTEALMAVDINSGKISGKGNFE 694 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 A +TN+EAAE IARQL+LRD+ G +V+DFI+M +KK+ VEK L++++K DRAR V Sbjct: 695 AMAFKTNMEAAETIARQLKLRDVGGQVVIDFIEMRDKKHILDVEKTLRQAMKNDRARHDV 754 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 +S+FGLLE+ RQR+ SS L T + C C G G R+ AL LR + L Sbjct: 755 ARMSSFGLLELVRQRMGSSALAITMEPCPACGGTGQRRNLEWQALQGLRELRRMLRATNG 814 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++ LYLLN KR ++ E E FG + + Sbjct: 815 EKCTFEATRELGLYLLNHKRDSLREMEQDFGKCLEI 850 Score = 93.9 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 44/75 (58%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +M I E+ V + + + E + H+++IKGNIY + ++ +LQAAFV YG Sbjct: 378 RMFISVLPGEQVEVALAEEGCLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYGA 437 Query: 64 NRHGFLPFLEIHPDY 78 ++GFL EIHP+Y Sbjct: 438 GKNGFLQIDEIHPEY 452 >gi|226329355|ref|ZP_03804873.1| hypothetical protein PROPEN_03260 [Proteus penneri ATCC 35198] gi|225202541|gb|EEG84895.1| hypothetical protein PROPEN_03260 [Proteus penneri ATCC 35198] Length = 408 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 124/407 (30%), Positives = 204/407 (50%), Gaps = 2/407 (0%) Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 +K I +++ Q L+VQ+VK+ G KGA +TT ++L RY V MP S Sbjct: 1 MKSRKKFNVRDIAQLVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGV 60 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 R + + + + G I+RTA + EIK+D +L RLW+ + E Sbjct: 61 SQRI--DSEEERERLKQLVEEYCDENGGFIIRTAAEGVGEHEIKQDAAFLKRLWNKIIER 118 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 + +Y E L +R +RD ++ I V + Y + ++F+ +P + Sbjct: 119 KKRNKTRIQIYGELALAQRILRDFAGSELDSIRVDSKLTYNQLQEFIGEYIPELTAKLEL 178 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 ++ PIF G+E ++ + +V L S GY+II+QTEA+ +ID+N+G +E+T Sbjct: 179 HQGNQPIFDLYGVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEET 238 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 TN+EA++ IARQLRLR+L G+I++DFIDM ++ R V L+++L KDR + + Sbjct: 239 IFNTNIEASQAIARQLRLRNLGGIIIIDFIDMNNDEHKRRVLASLEQALSKDRVKTTING 298 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 S GL+EM+R+R R S+ C C+G G ++S +V ILR + A Sbjct: 299 FSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHKTIDADR 358 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V+ S V L + + E E G + V + + + F + Sbjct: 359 FLVYASSAVAEALKGDESHALAEVEIFVGKQVKVQTELLYSQEQFDV 405 >gi|114045993|ref|YP_736543.1| ribonuclease G [Shewanella sp. MR-7] gi|113887435|gb|ABI41486.1| RNAse G [Shewanella sp. MR-7] Length = 488 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + K V G I+RTA + E+ +D +L R+W Sbjct: 136 SSHVGVSQRIEQEEERSRLKKITL--PFVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 194 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQAFAQEFMPEI 252 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 253 ADKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM ++ V L +L KDR Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSDEHKTRVLNSLNSALAKDRV 372 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C+G G +++ +V+ I R + Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVLCGECPACQGTGSMKTVETVSYEIFREIIRLNR 432 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + + E E G I + + + + Sbjct: 433 AYDADEFLLYCSPAVYNSLSGDESHLVAELEVYIGKRIRLQNEPMYSQHKYDV 485 >gi|290476775|ref|YP_003469686.1| RNase G [Xenorhabdus bovienii SS-2004] gi|289176119|emb|CBJ82924.1| RNase G (ribonuclease G) [Xenorhabdus bovienii SS-2004] Length = 489 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 128/413 (30%), Positives = 203/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK + I E++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGEEKKNFQVRDIAELVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK I G G I+RTA E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEEERDR-LKSIVMDYCNEHG-GFIIRTAAEGIGAEELVQDAAFLQRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++ + VY E L +R +RD ++ I V + + + ++F+ +P Sbjct: 194 GKVIERKKRNITKNKVYGELALAQRVLRDFAGAPLNRIRVDSRQTFLQLQEFIDEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y+ PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 NAKLELYQGNQPIFDIYDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLEETIFNTNIEATQSIARQLRLRNLGGIIIIDFIDMGNEEHRRRVLASLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTTINGFSQLGLVEMTRKRTRESIEHILCDNCPTCQGRGTVKSVETVCYEILREIVRVHR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ V L + + E E G + V + + F + Sbjct: 434 LIDADRFLVYASPAVSEVLKGDESHALAEVEIFVGKQVKVQTEQLYSQEQFDV 486 >gi|325267526|ref|ZP_08134179.1| cytoplasmic axial filament protein [Kingella denitrificans ATCC 33394] gi|324981051|gb|EGC16710.1| cytoplasmic axial filament protein [Kingella denitrificans ATCC 33394] Length = 498 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 116/407 (28%), Positives = 212/407 (52%), Gaps = 2/407 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I++V+ Q +LVQ++K+ +KGA ++T +SLAGR+ V +P I Sbjct: 90 QRQNPNSNPRIEQVLFEGQTVLVQVIKDPINSKGARLSTQISLAGRFLVHLPQDDHIG-I 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPA-GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 S++I N +R +L+E L G I+RT+ + T E++ D YL R+W ++ Sbjct: 149 SQRIENEEERNSLRERLNALLPEQACHGYIIRTSAETATDAELQADIHYLTRVWGDIVAQ 208 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 A L+Y++ L KR +RDL+ + EI+V + + F + + A + + Sbjct: 209 AKVCPPETLLYQDLPLAKRVLRDLFNDNTREILVDSRLNFDKMMAFAEQYVQDAAPKLHR 268 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 + P+F GIE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 FTGERPLFETYGIESEISRSLQPRVNLNFGSYLIIETTEAMTTIDVNTGGFVGARSFDET 328 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEA IAR+LRLR+L G+I++DFIDM ++++ +V ++L ++L DR RV + Sbjct: 329 IFKTNLEACHAIARELRLRNLGGIIIIDFIDMIQQEHRDAVLQELAKALSSDRTRVTLNG 388 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 ++ GL+E++R+R R S+ + C C+G G +++ +V I R + ++ Sbjct: 389 FTSLGLVELTRKRSRESLQHVLCEPCPVCQGRGSLKTPQTVCYEIQREIVRESRRFDVKE 448 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ G +++ + + + + I Sbjct: 449 FRIIASHSVIDLFLDEESQSLAMLIDFIGKPVSLSVEGSYSQEQYDI 495 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 L++ + +ETRV VL +N + EL E + GNIYL V RV P +Q+AF+D G R Sbjct: 20 LVNIT-PQETRVAVLEENNICELHVERNSDHSLVGNIYLGIVRRVLPGMQSAFIDIGLER 78 Query: 66 HGFLPFLEI 74 FL +++ Sbjct: 79 AAFLHIMDV 87 >gi|15677631|ref|NP_274790.1| cytoplasmic axial filament protein [Neisseria meningitidis MC58] gi|7227046|gb|AAF42130.1| cytoplasmic axial filament protein [Neisseria meningitidis MC58] Length = 509 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 101 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 160 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 161 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 220 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 221 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 280 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 281 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 340 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 341 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 400 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 401 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 460 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 461 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 506 >gi|282850517|ref|ZP_06259896.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745] gi|282580010|gb|EFB85414.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745] Length = 475 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 232/457 (50%), Gaps = 7/457 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + E ++ + + ++ + N + + D+ G + + ++ I Sbjct: 19 DEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + Q +LVQ+VKEE KGA VT +SLAGR+ VL+P S+G IS+KIT+ + Sbjct: 79 LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-ETMR 136 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + + V G G I+RTA A + EI RD EYL R W +V + + + +Y Sbjct: 137 SKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + + R +RD +++ EIIV + G D + S V ++ D PIF + Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409 IE QL+ L ++ LPS G + I+ TEAL DVNS T + + A N EAA+E Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLRD+ G+IVVDFIDM++K++ + + K L K D+ + V IS+ GL+EM+R Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLGVQAKLDKMKTVVCGISSLGLVEMTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN-IIVHTHSDVV 528 +R R + C C G GY+ S +V + I+R + E + + H +V Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKTDLELEVHPEVA 436 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YL +A +V+ G I++V+ +++ + + + Sbjct: 437 QYLT---KAVLVDLGESIGRKISIVVNPQISREGYSL 470 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 4 KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+L++ EE R+ V+ + ++ + E + + ++Y V V +QAAFVD G Sbjct: 3 KILVNVMR-EEIRMAVIDEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61 Query: 63 GNRHGFL 69 G+++ +L Sbjct: 62 GSQNAYL 68 >gi|329119340|ref|ZP_08248026.1| cytoplasmic axial filament protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464485|gb|EGF10784.1| cytoplasmic axial filament protein [Neisseria bacilliformis ATCC BAA-1200] Length = 497 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 114/407 (28%), Positives = 210/407 (51%), Gaps = 2/407 (0%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 K + I+ V+ Q LLVQ++K+ +KGA ++T +SLAGR+ V +P Sbjct: 89 QRKNPEAAQRIEHVLFEGQTLLVQVIKDPINSKGARLSTQISLAGRFLVHLPQEEHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 R + +R NL+ L P G I+RT+ + T E++ D YL ++W ++R Sbjct: 149 QRI-EDHEERHNLRGRLNSLLPPDSAHGYIIRTSAETATDAELQADIGYLTKVWQDIRSK 207 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 A A L+Y++ L R +RD++ + EI+V ++ + + +DF + ++ Sbjct: 208 AKTRPAGSLLYQDLPLSLRVLRDMFSGNTREILVDSKENFAKMQDFAAQYVQDAPEKIKL 267 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 + P+F +E +++ Q V+L Y+II TEA+ +IDVN+G ++T Sbjct: 268 FNGERPLFETHNVEAEINRALQPRVSLNFGSYLIIEATEAMTTIDVNTGGFVGARNFDET 327 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEA IAR+LRLR+L G+I++DFIDM + +V ++L ++L DR RV + Sbjct: 328 IFKTNLEACHAIARELRLRNLGGIIIIDFIDMASDIHREAVLQELAKALSFDRTRVTLNG 387 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 ++ GL+E++R+R R ++ + C C+G G +++ +V I R + ++ A Sbjct: 388 FTSLGLVELTRKRTRENLSHVLCEPCPACQGRGRLKTAQTVCYEIQREIVRENRRFDAKE 447 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + F + Sbjct: 448 FRILASPEVIDLFLDEESQSLAMLIDFIGKPISLAVENSYTQEQFDV 494 >gi|313669004|ref|YP_004049288.1| ribonuclease [Neisseria lactamica ST-640] gi|313006466|emb|CBN87929.1| putative ribonuclease [Neisseria lactamica 020-06] Length = 497 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W+++RE A Sbjct: 149 QRIEDDAERSSLRERLNKLLPENACRGYIIRTNAENTTDEQLQSDIDYLTKVWEHIREQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E +++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEINRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + GNIYL V RV P +Q+AF+D G Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76 Query: 65 RHGFLPFLEI-----HPDYYQ 80 R FL +++ +PD Q Sbjct: 77 RAAFLHIVDVLEQRRNPDETQ 97 >gi|163750437|ref|ZP_02157676.1| ribonuclease G [Shewanella benthica KT99] gi|161329758|gb|EDQ00746.1| ribonuclease G [Shewanella benthica KT99] Length = 488 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 122/396 (30%), Positives = 196/396 (49%), Gaps = 3/396 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++++ Q ++VQ+VK+ G KGA +TT ++L RY V MP +S R + Sbjct: 93 IAQLVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHIGVSQR--IESEEV 150 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + V G I+RTA S + E+ +D +L R+W V E L+Y Sbjct: 151 RARLKGLTQPFVDEDGGFIIRTAAESAGEQELVQDAAFLRRVWAKVCERR-KRPGVSLLY 209 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ L R +RD ++ +I V K + E F + MP A + Y P PIF Sbjct: 210 QDLALPVRIVRDFVGTELDQIQVDSSKTFDELLAFSQEFMPEIADKIVHYSGPVPIFDLY 269 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E ++ +V L S GY+II+QTEA+ ++D+N+G +EDT TNLEA + Sbjct: 270 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEDTIFNTNLEATQA 329 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM + ++ + V L+ +L DR + + S GL+EM+R Sbjct: 330 IARQLRLRNLGGIIIIDFIDMLDAEHQKRVLNSLELALSLDRVKTNISGFSGLGLVEMTR 389 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ C C G G +++ +V+ I R + Y A +V+ V Sbjct: 390 KRTRESLEHVLCGECPVCLGTGSLKTVETVSYEIFREIIRLNRSYDADEFLVYCSPAVHS 449 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L ++ + E G + + A F + Sbjct: 450 SLTGEESHLVAELGVYIGKRVKLKNEPMYAQNKFDV 485 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++LI+ + E RV ++ ++E+ E K+ + GNIY KV+RV P +QAAFVD Sbjct: 1 MGSELLINVT-PTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIVP 75 >gi|298368998|ref|ZP_06980316.1| ribonuclease G [Neisseria sp. oral taxon 014 str. F0314] gi|298283001|gb|EFI24488.1| ribonuclease G [Neisseria sp. oral taxon 014 str. F0314] Length = 497 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + L A G I+RT + T +++ D YL ++W++++E A Sbjct: 149 QRIEDDTERNSLRERLTNLLPEDACHGYIIRTNAENATDEQLQSDIHYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD++ D +I+V + +R F + + + + Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSLDTQKILVDSTENHRRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ ++ I R V +Y A + Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTICYEIQREVVREARRYDAQSF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 L++ + +ETRV VL +N + EL E + GNIYL V RV P +Q+AF+D G R Sbjct: 19 LVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLER 77 Query: 66 HGFLPFLEI-----HPDYYQ 80 FL +++ +PD Q Sbjct: 78 AAFLHIVDVLEQRRNPDETQ 97 >gi|261378252|ref|ZP_05982825.1| cytoplasmic axial filament protein [Neisseria cinerea ATCC 14685] gi|269145333|gb|EEZ71751.1| cytoplasmic axial filament protein [Neisseria cinerea ATCC 14685] Length = 497 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEEHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D YL ++W++++E A Sbjct: 149 QRIEDDTERNNLRERLNKLLPEKACHGYIIRTNAENATDEQLQSDINYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD++ D +I+V Y F + + + + Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSCDTQKILVDSTANYGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E +++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEINRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAQSF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 >gi|104780294|ref|YP_606792.1| ibonuclease G [Pseudomonas entomophila L48] gi|95109281|emb|CAK13978.1| ibonuclease G [Pseudomonas entomophila L48] Length = 485 Score = 249 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 123/399 (30%), Positives = 210/399 (52%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP +S + Sbjct: 84 ITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVGISLKIEEEAERE 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + + ++ G ILRTA +I +D YL RLW+ + AP Sbjct: 144 RLKQVVNDCMAQEDMKDAGGFILRTAAEGARAEDILQDIRYLRRLWEQIGAQISTCGAPT 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PIF Sbjct: 204 VIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR++ G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNIGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + + C C+G G +++ ++ I R + Y A V + Sbjct: 384 MTRKRTRESLEQVLCEPCAACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E EA G +I + + + + + Sbjct: 444 VVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482 >gi|240127507|ref|ZP_04740168.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae SK-93-1035] gi|268685883|ref|ZP_06152745.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae SK-93-1035] gi|268626167|gb|EEZ58567.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae SK-93-1035] Length = 497 Score = 249 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F IE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIIREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 >gi|194097742|ref|YP_002000783.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae NCCP11945] gi|239998245|ref|ZP_04718169.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae 35/02] gi|240013429|ref|ZP_04720342.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI18] gi|240015870|ref|ZP_04722410.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae FA6140] gi|240080010|ref|ZP_04724553.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae FA19] gi|240112218|ref|ZP_04726708.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae MS11] gi|240114962|ref|ZP_04729024.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID18] gi|240117246|ref|ZP_04731308.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID1] gi|240120500|ref|ZP_04733462.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID24-1] gi|240122800|ref|ZP_04735756.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae PID332] gi|240124994|ref|ZP_04737880.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae SK-92-679] gi|254493024|ref|ZP_05106195.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 1291] gi|260441222|ref|ZP_05795038.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI2] gi|268594101|ref|ZP_06128268.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 35/02] gi|268596153|ref|ZP_06130320.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae FA19] gi|268598278|ref|ZP_06132445.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae MS11] gi|268600629|ref|ZP_06134796.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID18] gi|268602942|ref|ZP_06137109.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID1] gi|268681413|ref|ZP_06148275.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID332] gi|268683580|ref|ZP_06150442.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae SK-92-679] gi|291044558|ref|ZP_06570267.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI2] gi|193933032|gb|ACF28856.1| Cytoplasmic axial filament protein [Neisseria gonorrhoeae NCCP11945] gi|226512064|gb|EEH61409.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 1291] gi|268547490|gb|EEZ42908.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae 35/02] gi|268549941|gb|EEZ44960.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae FA19] gi|268582409|gb|EEZ47085.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae MS11] gi|268584760|gb|EEZ49436.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID18] gi|268587073|gb|EEZ51749.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID1] gi|268621697|gb|EEZ54097.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae PID332] gi|268623864|gb|EEZ56264.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae SK-92-679] gi|291011452|gb|EFE03448.1| cytoplasmic axial filament protein [Neisseria gonorrhoeae DGI2] Length = 497 Score = 249 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F IE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 >gi|238018947|ref|ZP_04599373.1| hypothetical protein VEIDISOL_00807 [Veillonella dispar ATCC 17748] gi|237864431|gb|EEP65721.1| hypothetical protein VEIDISOL_00807 [Veillonella dispar ATCC 17748] Length = 475 Score = 249 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 143/457 (31%), Positives = 230/457 (50%), Gaps = 7/457 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + E ++ + + ++ + N + + D+ G + + ++ I Sbjct: 19 DEEGQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFIDIGGSQNAYLNLQQGKEQKI 78 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + Q +LVQ+VKEE KGA VT +SLAGR+ VL+P S+G IS+KIT+ + Sbjct: 79 LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-EAVR 136 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + + V G G I+RTA A + EI RD EYL R W +V + + + +Y Sbjct: 137 SKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + + R +RD +++ EIIV + G D + S V ++ PIF + Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRGSTPIFKANH 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409 IE QL+ L ++ LPS G + I+ TEAL DVNS T + + A N EAA+E Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLRD+ G+IVVDFIDM++K + + + + L K D+ + V IS+ GL+EM+R Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKSHQQELLQLLSAQAKLDKMKTVVCGISSLGLVEMTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528 +R R + C C G GY+ S +V + I+R + E N+ + H +V Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIIRRIRELFKSGRIKSNLEIEVHPEVA 436 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YL +A + E G I++V+ +++ + + + Sbjct: 437 EYLT---KAVLEELGDSIGRKISIVVNPQISREGYSL 470 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 4 KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+L++ EE R+ V+ + ++ + E + + ++Y V V +QAAF+D G Sbjct: 3 KILVNVMR-EEIRMAVVDEEGQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFIDIG 61 Query: 63 GNRHGFL 69 G+++ +L Sbjct: 62 GSQNAYL 68 >gi|332967836|gb|EGK06935.1| cytoplasmic axial filament protein [Kingella kingae ATCC 23330] Length = 498 Score = 249 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 113/406 (27%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ V+ Q +LVQ++K+ +KGA ++T +SLAGR+ V +P Sbjct: 90 QRQNPDSHHRIEHVLFEGQTILVQVIKDPINSKGARLSTQISLAGRFLVHLPQDEHIGIS 149 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + L A G I+RT+ + + E++ D YL R+W+++ A Sbjct: 150 QRIENEDDRSSLRQRLNALLPEQACHGYIIRTSAETASDAELQADINYLTRVWNDICNQA 209 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L KR +RDL+ + EI+V + + F + + A + ++ Sbjct: 210 KLCPPETLLYQDLPLAKRVLRDLFNDNTREILVDSRLNFDKMLAFAQQYVQDAADKLHRF 269 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F GIE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 270 KGERPLFETYGIEAEISRALQPRVNLNFGSYLIIETTEAMTTIDVNTGGFVGARNFDETI 329 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDME ++ +V ++L ++L DR RV + Sbjct: 330 FKTNLEACHAIARELRLRNLGGIIIIDFIDMELPEHREAVLQELAKALSFDRTRVTLNGF 389 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 + GL+E++R+R R S+ + C C+G G +++ ++ I R V ++ A Sbjct: 390 TTLGLVELTRKRSRESLQHVLCEPCPTCQGRGSLKTAQTICYEIQREVVRESRRFEAKEF 449 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ G I++ + + + + I Sbjct: 450 RIIASPSVIDLFLDEESQSLAMLIDFIGKPISLAVESLYSQEQYDI 495 >gi|187929474|ref|YP_001899961.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J] gi|309781751|ref|ZP_07676484.1| ribonuclease G [Ralstonia sp. 5_7_47FAA] gi|187726364|gb|ACD27529.1| ribonuclease, Rne/Rng family [Ralstonia pickettii 12J] gi|308919392|gb|EFP65056.1| ribonuclease G [Ralstonia sp. 5_7_47FAA] Length = 489 Score = 249 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 118/412 (28%), Positives = 202/412 (49%), Gaps = 1/412 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + Q I++ + Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 75 HPRDAKDAPPTPQVAIEKTLFEGQALMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQDP 134 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 + + + G I+RT T E+ D YL ++W Sbjct: 135 HIGISQKIGNEAEREALRARVTAMVPTDERGGFIVRTIAEESTDEELANDVAYLRKIWAT 194 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +R A AP ++Y++ NL +R +RD + I V + +++ +F + P+ Sbjct: 195 IRHNATTLPAPSILYQDLNLAQRVLRDFVTDETRSIQVDSRENHQKLVEFAQEYTPAVVE 254 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF IE +++ V L S GY++I+QTEA+ +IDVN+G Sbjct: 255 RLTHYTGERPIFDLYNIEAEVERALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +DT +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +L+++L +DR R+ Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMESAEHRDAVLAELRKALSRDRTRI 374 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 V + S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE-LADKLFYI 565 + V+ L ++ + G I++ + + + + I Sbjct: 435 NPREFRILASQSVIDLFLEEESQHLAMLGDFIGKPISLQVESSAASQEQYDI 486 >gi|24375581|ref|NP_719624.1| ribonuclease G [Shewanella oneidensis MR-1] gi|24350470|gb|AAN57068.1|AE015840_4 ribonuclease G [Shewanella oneidensis MR-1] Length = 488 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 127/413 (30%), Positives = 197/413 (47%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + K V G I+RTA + E+ +D +L R+W Sbjct: 136 SSHIGVSQRIEQEEERSRLKKITL--PFVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 194 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQAFAQEFMPEI 252 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 253 ADKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM ++ V L +L KDR Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSDEHKTRVLNSLNSALAKDRV 372 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V A S GL+EM+R+R R S+ C CKG G +++ +V+ I R + Sbjct: 373 KTNVSAFSGLGLVEMTRKRTRESLEHVLCGECPACKGTGSMKTVETVSYEIFREIIRLNR 432 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + + E E G I + + + + Sbjct: 433 AYDADEFLLYCSPAVYNSLSGDESHLVAELEVYIGKRIRLQNEPMYSQHKYDV 485 >gi|59800573|ref|YP_207285.1| putative ribonuclease G / cytoplasmic axial filament protein [Neisseria gonorrhoeae FA 1090] gi|293397687|ref|ZP_06641893.1| ribonuclease G [Neisseria gonorrhoeae F62] gi|59717468|gb|AAW88873.1| putative ribonucleases G / cytoplasmic axial filament protein [Neisseria gonorrhoeae FA 1090] gi|291611633|gb|EFF40702.1| ribonuclease G [Neisseria gonorrhoeae F62] Length = 497 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F IE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHDF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + GNIYL V RV P +Q+AF+D G Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 77 RAAFLHIVDV 86 >gi|307826260|ref|ZP_07656469.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96] gi|307732722|gb|EFO03590.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96] Length = 484 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 111/397 (27%), Positives = 202/397 (50%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I+ + Q ++VQ+VK+ G+KGA +TT +S+ R+ V MP R Sbjct: 85 NIEHYLHEGQHIIVQVVKDPLGSKGARLTTEISIPSRFQVYMPYAHNSGVSQRIECETER 144 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 + + G I RTA + + D +L++LW+++ + + Sbjct: 145 VRLRTCLDTFRLENKCGGFIARTAAECVDETVLIADMTFLLKLWESIAAKIAGAKPKQFI 204 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 +++ L R +RDLY + I + V + Y +F ++ P ++ Y P+F Sbjct: 205 HKDLPLSIRTLRDLYREGIERVRVDSRETYHRLVEFAEIFAPEIVPVIEHYTGECPVFDI 264 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 +E ++ + +V L S G+++ +QTE++ ++DVN+G +E+T +TNLEAA+ Sbjct: 265 YSVEDEIQKALERKVNLKSGGHLVFDQTESMTTVDVNTGGYVGGRNLEETIFKTNLEAAQ 324 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 I+RQLRLR+L G+I++DFIDM+ + + + V + + L+KD A+ + +S GL+EM+ Sbjct: 325 TISRQLRLRNLGGIIIIDFIDMQSEDHKKQVLQAFERHLEKDHAKTNITEVSVLGLVEMT 384 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R+R R S+ + C+ C G G +++ S+ L I R + + QY I+V ++VV Sbjct: 385 RKRTRESLEHILCEPCSACGGRGVLKTAESMCLEIFREIIREVRQYKVKKILVLASNEVV 444 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 LL+++ + E E V I E + + + Sbjct: 445 EMLLDEEADMLAELEVFLSVRIKFRAEAEYNQEQYDV 481 >gi|300113170|ref|YP_003759745.1| Rne/Rng family ribonuclease [Nitrosococcus watsonii C-113] gi|299539107|gb|ADJ27424.1| ribonuclease, Rne/Rng family [Nitrosococcus watsonii C-113] Length = 490 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 223/399 (55%), Gaps = 2/399 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I ++ Q +LVQ++K+ G KGA +TT +S+A RY V MP S G +S KI +P Sbjct: 90 PSITSLLSEGQEVLVQVIKDPIGTKGARLTTQISIASRYLVYMPEMS-GIGVSLKIEDPE 148 Query: 228 DRKNLKEIARGLEVPAGMG-VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +R+ LK + + + G I+RT + ++ D E+L +LW ++E + A Sbjct: 149 ERQRLKNLLASVLLEDDRGGYIIRTVAEGAVEEDLCTDMEFLHKLWRTIKERSQTVKAGS 208 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 +V+++ +L+ R +RD + + + + + Y + DF + +P + Y+ PIF Sbjct: 209 VVHKDLSLVMRTMRDFVHERVERVRIDSRETYHKLVDFAERFIPDLLTTLECYQGERPIF 268 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 GIE ++ +V L S GY+II+QTEA+ +ID+N+G +E+T +TNLEA Sbjct: 269 DLYGIEDEIQKSLGRKVQLKSGGYLIIDQTEAMATIDINTGAFVGHRNLEETIFKTNLEA 328 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+ I RQLRLR+L G+I++DFIDMEE+ + R V + L++ L+KD A+ + +S+ GL+E Sbjct: 329 AQAICRQLRLRNLGGIIIIDFIDMEEEDHKRQVLRALEKGLEKDHAKTHISEVSSLGLVE 388 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + + C C G +++ +V ILR + Q+ A +V + Sbjct: 389 MTRKRTRESLEQILCEPCPTCNGRATVKTVETVCYEILREILREARQFEASQYLVIAAQE 448 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV L++++ A++ E E+ G + + + F + Sbjct: 449 VVDRLMDEESASVAELESFIGKPLKFQTELLYMREQFDV 487 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + ETRV V+ + V+EL E ++ GNIY +V R+ P +QAAFV+ Sbjct: 1 MSEEILINVT-PSETRVAVVENGVVQELYIERSSRRGWVGNIYKGQVNRILPGMQAAFVN 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHASDI 73 >gi|325131704|gb|EGC54409.1| ribonuclease G [Neisseria meningitidis M6190] Length = 509 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 101 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 160 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 161 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 220 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 221 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 280 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 281 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 340 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 341 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 400 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 401 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 460 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 461 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 506 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + + GNIYL V RV P +Q+AF+D Sbjct: 30 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIDLE 88 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 89 RAAFLHIVDV 98 >gi|301156491|emb|CBW15962.1| ribonuclease G [Haemophilus parainfluenzae T3T1] Length = 491 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + +K R I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDVNEQKQFRAKTISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA T+ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGATEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKGKYPTRSKIYGEPALPQRILRDFIGANLEKIHIDSKLCFNEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SEKLMLYTGNQPIFDIYGVERGIQNALEKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L+E+L KDR Sbjct: 315 RNLDETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVIESLEEALSKDRV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C+G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCQGRGRVKTVETVCYEIMREIIRVNH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+ ++ ++ E E + V + F + Sbjct: 435 LFSSEQFVVYASPAVADYLIKEESHGLLPEIEMFISKQVQVKTEQYYNQEQFDV 488 >gi|325139675|gb|EGC62213.1| ribonuclease G [Neisseria meningitidis CU385] Length = 518 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 110 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 169 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 170 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 229 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 230 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 289 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 290 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 349 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 350 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 409 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 410 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 469 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 470 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 515 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + + GNIYL V RV P +Q+AF+D G Sbjct: 39 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 97 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 98 RAAFLHIVDV 107 >gi|297620642|ref|YP_003708779.1| ribonuclease G [Waddlia chondrophila WSU 86-1044] gi|297375943|gb|ADI37773.1| ribonuclease G [Waddlia chondrophila WSU 86-1044] Length = 511 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 255/490 (52%), Gaps = 9/490 (1%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 R ALLK + E D G++ ++ A E I + Sbjct: 11 KEIRCALLKHGVLHDLIVERKKDRQLTGNIYKGKVKNILHNIQSAFIDINEGENGFIHIS 70 Query: 143 NDVVSNVEDVKGGSPED-------VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195 + + + + + E + K I EV+K Q +LVQ++KE G KGA Sbjct: 71 DIIENTKKFHEQFDLEFDLDYDISKINEKKADLNIDEVLKLDQPVLVQVIKEPMGTKGAR 130 Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGAS 255 +T+ +S+AGRY VL+PN+S +SR+I + R+ LK++ R E+P MG+I RTA A Sbjct: 131 LTSNISIAGRYLVLLPNSSHRG-VSRRIEDRHTRERLKKLIRSFEMPQDMGLICRTASAH 189 Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + + + L++ W+ + E + +++ E +LIKRA+ K I I++ Sbjct: 190 ASPEMLIDEANDLLQNWEQIIEQFNSKEESGILFAESDLIKRALITAADKKIDRILIDDY 249 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 Y++ K + + Y D P++ R +E ++D + ++ L S GY+ ++ Sbjct: 250 NIYQKCKRHYSKYQHEHPLKIELYRDKVPMYERFNVEKEIDKSLRRKIWLNSGGYLFFDR 309 Query: 376 TEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434 TEA+ +IDVNSGRS+ +E+T +Q NLEAAEEI+RQLRLR++ GL++ DFIDM +K Sbjct: 310 TEAMYTIDVNSGRSSSSDSNVEETLVQINLEAAEEISRQLRLRNIGGLVICDFIDMRYRK 369 Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494 N R V +L++ +K+D A+ + ++S+FGL+EM+RQR R S++++ C YC G+G I+ Sbjct: 370 NQRRVLDRLRDCMKEDSAKCTILSMSDFGLVEMTRQRSRGSLIQTVFTTCPYCAGSGLIK 429 Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + SVA+ + RS+++ + + + H ++ YL + ++ + + + Sbjct: 430 THESVAIELERSLKKVVGLSQQFALKLTVHPELYRYLCIDDKEYLLALADKMNARLEIEQ 489 Query: 555 GIELADKLFY 564 L F Sbjct: 490 DDNLHINDFR 499 >gi|146281406|ref|YP_001171559.1| cytoplasmic axial filament protein [Pseudomonas stutzeri A1501] gi|145569611|gb|ABP78717.1| cytoplasmic axial filament protein [Pseudomonas stutzeri A1501] Length = 485 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 133/401 (33%), Positives = 219/401 (54%), Gaps = 5/401 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP TS IS +I + + Sbjct: 83 PINALVHEGQSLVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRTSHVG-ISLRIEDEAE 141 Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R+ LK++ G+ G ILRTA + EI D YL RLW+ + + A Sbjct: 142 RERLKQVVAECVAAEGIQEAGGFILRTAAEGAGRDEILMDIRYLRRLWEQIAGQIKTAAA 201 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P ++YE+ +L R +RDL I +I + + +++ F+ LMP + Y P Sbjct: 202 PTVIYEDLSLAMRTLRDLVNPRIEKIRIDSRENFQKVSQFVGELMPELGDRLEHYPGERP 261 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF G+E ++ + +V L S GY+II+ EA+ +IDVN+G +E+T +TNL Sbjct: 262 IFDLYGVEDEIQKALERKVMLKSGGYLIIDPAEAMTTIDVNTGAFVGHRTLEETIFKTNL 321 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 E+A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL Sbjct: 322 ESATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGL 381 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R R S+ + + C C+G G +++ +V I R + Y A V + Sbjct: 382 VQMTRKRTRESLEQVLCEPCMCCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLAN 441 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL+++ + + EA G SI + + + + + Sbjct: 442 QKVIDRLLDEESGNVADLEAFIGRSIKFQVESMYSQEQYDV 482 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILMNIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ LEI Sbjct: 60 IGLDRAAFIHALEI 73 >gi|296315112|ref|ZP_06865053.1| cytoplasmic axial filament protein [Neisseria polysaccharea ATCC 43768] gi|296838025|gb|EFH21963.1| cytoplasmic axial filament protein [Neisseria polysaccharea ATCC 43768] Length = 497 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEEHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDTERSNLRERLNKLLPEKACHGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEIGRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR R+ + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRITLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 THLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAQSF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 >gi|319789105|ref|YP_004150738.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1] gi|317113607|gb|ADU96097.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1] Length = 500 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 151/421 (35%), Positives = 253/421 (60%), Gaps = 3/421 (0%) Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 V + +++ E + ++EV+ Q LLVQ+ KE G KG VTT +++ G Sbjct: 79 VKDAVNLELDEEELEEEAEFELPPVEEVLSVGQELLVQVAKEPIGTKGPRVTTNITIPGH 138 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VL+P +K +SR+IT+ +R+ LKEIA ++ P G+I+RTA +K E+++D Sbjct: 139 YLVLLPTINKLG-LSRRITDEAERERLKEIASEIKPP-EYGLIVRTAAEGASKEELEKDL 196 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 Y++++W+ ++E A P L+Y++ ++ + +RDL ++++E+I+ + A F Sbjct: 197 NYILKVWEGLKEKAQRRPPPTLLYQDLEIVPKTLRDLLTEEVTEVIIDSRSEFERALSFT 256 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 K +P A ++ YE P+F + +E ++ +V LP GY++I++TEALVSIDVN Sbjct: 257 KGFIPKLADRIKLYEGKIPLFEKFQVEKAIEKALSRKVYLPGGGYIVIDETEALVSIDVN 316 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 SG+ + +E+TAL+ NL+AA EIARQLRLRD+ G+IV+DFIDM+E +N + K L+E Sbjct: 317 SGKFKKSSTLEETALEINLKAAREIARQLRLRDIGGIIVIDFIDMKEPENKELLLKTLEE 376 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 L KDRAR ++ ++S+ GL+EM+R+R++ S+ ++ T C YC+G G ++S +VA I R Sbjct: 377 ELSKDRARTKIVSMSDLGLVEMTRKRVKKSLGKTLTVTCPYCEGRGRVKSPETVAFEIER 436 Query: 506 SVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 + +L A + V+ + V L N++ + + F V I VV + + F Sbjct: 437 ELLSFLKGVRAGRPVTVYANPSVAQKLKNEESEILERIKEMFKVPIKVVPVQDYHIEKFT 496 Query: 565 I 565 I Sbjct: 497 I 497 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI++S +E R+ VL + + E E + + + GNIY KVT++ P++QAAFVD G Sbjct: 12 KQILINSST-KEVRIAVLEEGELVEFYVERKGNRGLVGNIYKGKVTKIVPAVQAAFVDIG 70 Query: 63 GNRHGFLPFLE 73 +R FL + Sbjct: 71 ESRSAFLYVKD 81 >gi|269798279|ref|YP_003312179.1| ribonuclease, Rne/Rng family [Veillonella parvula DSM 2008] gi|269094908|gb|ACZ24899.1| ribonuclease, Rne/Rng family [Veillonella parvula DSM 2008] Length = 475 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 232/457 (50%), Gaps = 7/457 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + E ++ + + ++ + N + + D+ G + + ++ I Sbjct: 19 DEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + Q +LVQ+VKEE KGA VT +SLAGR+ VL+P S+G IS+KIT+ + Sbjct: 79 LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-EALR 136 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + + V G G I+RTA A + EI RD EYL R W +V + + + +Y Sbjct: 137 SKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + + R +RD +++ EIIV + G D + S V ++ D PIF + Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409 IE QL+ L ++ LPS G + I+ TEAL DVNS T + + A N EAA+E Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLRD+ G+IVVDFIDM++K++ + + K L K D+ + V IS+ GL+EM+R Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLGVQAKLDKMKTVVCGISSLGLVEMTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528 +R R + C C G GY+ S +V + I+R + E N+ + H +V Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKTNLEIEVHPEVA 436 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YL +A + + G I++V+ +++ + + + Sbjct: 437 QYLT---KAVLEDLGESIGRKISIVVNPQISREGYSL 470 Score = 83.9 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 4 KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+L++ EE R+ V+ + ++ + E + ++Y V V +QAAFVD G Sbjct: 3 KILVNVMR-EEIRMAVIDEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVDIG 61 Query: 63 GNRHGFL 69 G+++ +L Sbjct: 62 GSQNAYL 68 >gi|317163530|gb|ADV07071.1| putative ribonuclease G / cytoplasmic axial filament protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 479 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 71 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 130 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 131 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 190 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 191 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 250 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F IE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 251 KGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 310 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 311 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 370 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 371 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 430 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 431 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 476 >gi|161869427|ref|YP_001598594.1| putative ribonucleases G / cytoplasmic axial filament protein [Neisseria meningitidis 053442] gi|218767623|ref|YP_002342135.1| hypothetical protein NMA0672 [Neisseria meningitidis Z2491] gi|254804391|ref|YP_003082612.1| ribonuclease G [Neisseria meningitidis alpha14] gi|304388294|ref|ZP_07370410.1| cytoplasmic axial filament protein [Neisseria meningitidis ATCC 13091] gi|121051631|emb|CAM07932.1| hypothetical protein NMA0672 [Neisseria meningitidis Z2491] gi|161594980|gb|ABX72640.1| putative ribonucleases G / cytoplasmic axial filament protein [Neisseria meningitidis 053442] gi|254667933|emb|CBA04134.1| ribonuclease G [Neisseria meningitidis alpha14] gi|254670278|emb|CBA05570.1| putative ribonuclease [Neisseria meningitidis alpha153] gi|261393125|emb|CAX50730.1| ribonuclease G (RNase G; cytoplasmic axial filament protein) [Neisseria meningitidis 8013] gi|304337725|gb|EFM03878.1| cytoplasmic axial filament protein [Neisseria meningitidis ATCC 13091] gi|308389892|gb|ADO32212.1| cytoplasmic axial filament protein [Neisseria meningitidis alpha710] gi|316984390|gb|EFV63363.1| ribonuclease G [Neisseria meningitidis H44/76] gi|319409881|emb|CBY90196.1| ribonuclease G (RNase G; cytoplasmic axial filament protein) [Neisseria meningitidis WUE 2594] gi|325127603|gb|EGC50523.1| ribonuclease G [Neisseria meningitidis N1568] gi|325129591|gb|EGC52413.1| ribonuclease G [Neisseria meningitidis OX99.30304] gi|325133696|gb|EGC56353.1| ribonuclease G [Neisseria meningitidis M13399] gi|325135660|gb|EGC58276.1| ribonuclease G [Neisseria meningitidis M0579] gi|325137720|gb|EGC60297.1| ribonuclease G [Neisseria meningitidis ES14902] gi|325141704|gb|EGC64163.1| ribonuclease G [Neisseria meningitidis 961-5945] gi|325197705|gb|ADY93161.1| ribonuclease G [Neisseria meningitidis G2136] gi|325201562|gb|ADY97016.1| ribonuclease G [Neisseria meningitidis M01-240149] gi|325206700|gb|ADZ02153.1| ribonuclease G [Neisseria meningitidis M04-240196] gi|325207543|gb|ADZ02995.1| ribonuclease G [Neisseria meningitidis NZ-05/33] Length = 497 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + + GNIYL V RV P +Q+AF+D G Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 77 RAAFLHIVDV 86 >gi|261401311|ref|ZP_05987436.1| cytoplasmic axial filament protein [Neisseria lactamica ATCC 23970] gi|269208690|gb|EEZ75145.1| cytoplasmic axial filament protein [Neisseria lactamica ATCC 23970] Length = 497 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDAERSSLRERLNKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR R+ + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRITLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 THLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + GNIYL V RV P +Q+AF+D G Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 77 RAAFLHIVDV 86 >gi|293391951|ref|ZP_06636285.1| ribonuclease, Rne/Rng family [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952485|gb|EFE02604.1| ribonuclease, Rne/Rng family [Aggregatibacter actinomycetemcomitans D7S-1] Length = 491 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 132/485 (27%), Positives = 230/485 (47%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E G++ + A E+ + + A Sbjct: 12 PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I +++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEQKQFV------VKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + LKE+A L G G I+RTA +++++ Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERAR-LKELALPLCDELG-GFIIRTAAEGASELDL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D E+L RLW V E ++Y E L +R +RD + I + + E Sbjct: 184 QQDAEFLKRLWRKVLERRAKYPTRSMLYGELALTQRILRDFIGAKLDRIHIDSRLCFNEV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F + +P+ + Y P+F +E + + V L S GY+II QTEA+ + Sbjct: 244 KQFTEEFIPNLTDKLILYAGNQPLFDVYSVETGIHNALDKRVNLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+++++ V + Sbjct: 304 IDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQKEEHRTRVLE 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+L D + V + GL+EM+R+R R S+ C C+G G +++ +V Sbjct: 364 SLQEALAGDPVKTNVNGFTQLGLVEMTRKRTRESLERVLCGDCPACQGRGRVKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELAD 560 I+R + + + +V+ V YL+N++ + E E G I V + Sbjct: 424 EIMREIIRVHHVFASEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQVKTEVFYTQ 483 Query: 561 KLFYI 565 + F + Sbjct: 484 EQFDV 488 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETR+ ++ ++E+ E + K+ I GNIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|319424914|gb|ADV52988.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200] Length = 488 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + K V G I+RTA + E+ +D +L R+W Sbjct: 136 SSHVGVSQRIELEEERSRLKKITL--PYVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 194 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFDELQTFAQEFMPEI 252 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 253 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM +++ V L +L KDR Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLNEEHKTRVLNSLNSALAKDRV 372 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V+ I R + Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVVCSECPACHGTGSMKTVETVSYEIFREIIRLNR 432 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L ++ I E E I + + + + Sbjct: 433 AYDADEFLLYCSPAVYQSLSGEESHLIAELEVYISKRIRLQNEPMYSQHKYDV 485 >gi|83746488|ref|ZP_00943539.1| Ribonuclease G [Ralstonia solanacearum UW551] gi|207723775|ref|YP_002254173.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein) [Ralstonia solanacearum MolK2] gi|207743800|ref|YP_002260192.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein) [Ralstonia solanacearum IPO1609] gi|83726819|gb|EAP73946.1| Ribonuclease G [Ralstonia solanacearum UW551] gi|206588979|emb|CAQ35941.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein) [Ralstonia solanacearum MolK2] gi|206595200|emb|CAQ62127.1| ribonuclease g (rnase g) (cytoplasmic axial filament protein) [Ralstonia solanacearum IPO1609] Length = 489 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 1/412 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + I++ + Q L VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 75 HPRDAKDAPPTPHVAIEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLPQDP 134 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 + + + + G I+RT T E+ D YL ++W Sbjct: 135 HIGISQKIGNETDREALRQRVTGMVPADERGGFIVRTIAEESTDEELANDVAYLRKIWAT 194 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +R A AP ++Y++ NL +R +RD D I V + Y++ +F + P+ Sbjct: 195 IRHNATTLPAPSILYQDLNLAQRVLRDFVTDDTRSIQVDSRENYQKLVEFAQEYTPAVVE 254 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF IE +++ V L S GY++I+QTEA+ +IDVN+G Sbjct: 255 RLTHYTGERPIFDLYNIEAEIERALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +DT +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +L+ +L +DR R+ Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMESTEHRDAVLAELRRALARDRTRI 374 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 V + S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI-ELADKLFYI 565 + V+ L ++ + G I++ + + + + I Sbjct: 435 NPREFRILASQSVIDLFLEEESQHLAMLGDFIGKPISLQVESAAASQEQYDI 486 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 60 IGLERAAFLHVADIWHP 76 >gi|325578058|ref|ZP_08148252.1| ribonuclease G [Haemophilus parainfluenzae ATCC 33392] gi|325160291|gb|EGC72419.1| ribonuclease G [Haemophilus parainfluenzae ATCC 33392] Length = 491 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + +K R I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 77 HTECVDVNEQKQFRAKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA T+ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIVRTATEGATEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E ++F MP Sbjct: 195 RKVLERKGKYPTRSKIYGEPALPQRILRDFIGANLEKIHIDSKLCFNEVREFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SEKLMLYTGNQPIFDIYGVERGIQNALEKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IA+QL+LR+L G+I++DFIDM+ ++ V + L+E+L KDR Sbjct: 315 RNLDETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVIESLEEALSKDRV 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C+G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCQGRGRVKTVETVCYEIMREIIRVNH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+ ++ ++ E E + V + F + Sbjct: 435 LFSSEQFVVYASPAVADYLIKEESHGLLPEIEMFISKQVQVKTEQYYNQEQFDV 488 >gi|309379641|emb|CBX21812.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 497 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W+++RE A Sbjct: 149 QRIEDDAERSSLRERLNKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIREQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + GNIYL V RV P +Q+AF+D G Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 77 RAAFLHIVDV 86 >gi|254787698|ref|YP_003075127.1| ribonuclease, Rne/Rng family [Teredinibacter turnerae T7901] gi|237686341|gb|ACR13605.1| ribonuclease, Rne/Rng family [Teredinibacter turnerae T7901] Length = 493 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 127/422 (30%), Positives = 222/422 (52%), Gaps = 4/422 (0%) Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 +V D+ ++ ++ + I++ ++ Q +LVQ++K+ KGA ++T+LS++ RY Sbjct: 69 HVSDIAVDPAKNGDERGHAEADIRDFLREGQDILVQVIKDPISTKGARLSTHLSVSARYL 128 Query: 208 VLMPNTSKGETISRKITNPVDRKNL----KEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 V MPN+ +R + + K A E G G I+RT ++ +++ Sbjct: 129 VYMPNSHHIGVSNRIEDDTERDRLRAIVEKLAAEYEEEYKGGGFIIRTVAEGASEEDLRA 188 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 D ++ RLW ++ + S AP ++YE+ L R IRDL +I ++ + + + + + Sbjct: 189 DIPFVFRLWHDLADTIAKSRAPAIIYEDLPLYMRTIRDLMRSNIEKVRIDSRESFAKMEK 248 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 F K P + Y P+F G+E ++ +V L S GY+II QTEA+ +ID Sbjct: 249 FAKHYAPEIGGRIEHYPGERPLFDLYGVEDEIQRALDKKVVLKSGGYLIIEQTEAMTTID 308 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VN+G +E+T +TNLEA+ IARQLRLR+L G+I++DFIDM + ++ R V + L Sbjct: 309 VNTGAFVGHRNLEETIFKTNLEASTAIARQLRLRNLGGIIIIDFIDMRDVEHKRQVHRTL 368 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 ++SL+KDRA+ + +S GL+EM+R+R R S+ + + C C G G ++S ++ I Sbjct: 369 EKSLEKDRAKTSITRVSELGLVEMTRKRTRESLGQMLCEPCPVCAGRGTLKSAETICYEI 428 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R + Y +V V+ LL+Q+ ++ + EA I + + + Sbjct: 429 FREILREARAYDNERFLVLVSQPVIDRLLDQESDSVADLEAFINRPIQFQVESLYNQEQY 488 Query: 564 YI 565 I Sbjct: 489 DI 490 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ ETR ++ + ++E+ E K GNIY +V RV P +QAAFVD Sbjct: 1 MSEEILVNF-GPTETRAALVENGVLQEVYIERARTKGFVGNIYKGRVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G R GF+ +I D Sbjct: 60 IGQARAGFIHVSDIAVD 76 >gi|319776365|ref|YP_004138853.1| ribonuclease G [Haemophilus influenzae F3047] gi|319897008|ref|YP_004135203.1| ribonuclease g [Haemophilus influenzae F3031] gi|329123521|ref|ZP_08252084.1| ribonuclease G [Haemophilus aegyptius ATCC 11116] gi|317432512|emb|CBY80870.1| ribonuclease G [Haemophilus influenzae F3031] gi|317450956|emb|CBY87183.1| ribonuclease G [Haemophilus influenzae F3047] gi|327470337|gb|EGF15795.1| ribonuclease G [Haemophilus aegyptius ATCC 11116] Length = 491 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 122/414 (29%), Positives = 205/414 (49%), Gaps = 3/414 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 ++ +K + I E+++ Q ++VQ+VKE G KGA +TT ++L RY V MP Sbjct: 77 HTECVDENEQKQFKVKSISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRYLVFMPE 136 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + + G I+RTA ++ E+++D E+L RLW Sbjct: 137 NSHVGVSQRIESEEERAR--LKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKRLW 194 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E +Y E L +R +RD ++ +I + + + E K+F MP Sbjct: 195 RKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCFGEVKEFTDEFMPEL 254 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + + Y PIF G+E + + V L S GY+II QTEA+ +ID+N+G Sbjct: 255 SDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGH 314 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ + V + L ++L KDR Sbjct: 315 RNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEYRNRVLQSLCDALSKDRM 374 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + GL+EM+R+R R S+ C C G G +++ +V I+R + Sbjct: 375 KTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVETVCYEIMREIIRVHH 434 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYI 565 +++ +V+ V YL+N++ ++ E E G + V + F + Sbjct: 435 LFSSEQFVVYASPAVSEYLINEEYHGLLPEVEMFIGKRVKVKTEQFYNQEQFDV 488 >gi|327479584|gb|AEA82894.1| cytoplasmic axial filament protein [Pseudomonas stutzeri DSM 4166] Length = 485 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 133/401 (33%), Positives = 219/401 (54%), Gaps = 5/401 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP TS IS +I + + Sbjct: 83 PINALVHEGQSLVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRTSHVG-ISLRIEDEAE 141 Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R+ LK++ G+ G ILRTA + EI D YL RLW+ + + A Sbjct: 142 RERLKQVVAECVAAEGIQEAGGFILRTAAEGAGRDEILMDIRYLRRLWEQIAGQIKTAAA 201 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P ++YE+ +L R +RDL I +I + + +++ F+ LMP + Y P Sbjct: 202 PTVIYEDLSLAMRTLRDLVNPRIEKIRIDSRENFQKVSQFVGELMPELGDRLEHYPGERP 261 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF G+E ++ + +V L S GY+II+ EA+ +IDVN+G +E+T +TNL Sbjct: 262 IFDLYGVEDEIQKALERKVMLKSGGYLIIDPAEAMTTIDVNTGAFVGHRTLEETIFKTNL 321 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 E+A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL Sbjct: 322 ESATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGL 381 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R R S+ + + C C+G G +++ +V I R + Y A V + Sbjct: 382 VQMTRKRTRESLEQVLCEPCMCCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLAN 441 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL+++ + + EA G SI + + + + + Sbjct: 442 QKVIDRLLDEESGNVADLEAFIGRSIKFQVESMYSQEQYDV 482 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILMNIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|294668363|ref|ZP_06733466.1| hypothetical protein NEIELOOT_00275 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309681|gb|EFE50924.1| hypothetical protein NEIELOOT_00275 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 497 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 204/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ +KGA ++T +SLAGR+ V +P Sbjct: 89 QRQNPDETQRIEHMLFEGQTVLVQVIKDPINSKGARLSTQISLAGRFLVHLPQEEHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + L A G I+RT+ + E++ D +YL ++W N+R+ A Sbjct: 149 QRIEDHEDRHNLRDRLQNLLPPDAAHGYIIRTSAETAGDAELQADIDYLTKVWANIRQQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 A L+Y++ L R +RD++ + EI+V ++ + + + F + A ++ + Sbjct: 209 KTCPAESLLYQDLPLSLRVLRDMFSNNTREILVDSKENFAKMQHFATQYVQGAAEKIKLF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P+F +E +++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 TGERPLFETHNVEAEINRALQPRVNLNFGSYLIIEATEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM + +V ++L ++L DR RV + Sbjct: 329 FKTNLEACHAIARELRLRNLGGIIIIDFIDMSSDVHREAVLQELAKALSFDRTRVTLNGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + C C+G G +++ +V I R + ++ Sbjct: 389 TSLGLVELTRKRTRENLSHVLCEPCPACQGRGRLKTPQTVCYEIQREIVRESRRFDVRQF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G +++ + + F + Sbjct: 449 RILASPEVIDLFLDEESQSLAMLIDFIGKPVSLAVENSYTQEQFDV 494 >gi|167031959|ref|YP_001667190.1| ribonuclease [Pseudomonas putida GB-1] gi|166858447|gb|ABY96854.1| ribonuclease, Rne/Rng family [Pseudomonas putida GB-1] Length = 485 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 131/401 (32%), Positives = 217/401 (54%), Gaps = 5/401 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP +S IS KI + + Sbjct: 83 NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141 Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R+ LK++ + G ILRTA EI +D YL RLW+ + A Sbjct: 142 RERLKQVVSDCMDSENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGTQIKTCGA 201 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y P Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNL Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA IARQLRLR++ G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGL 381 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R R S+ + + C C+G G +++ ++ I R + Y A V + Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E EA G +I + + + + + Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHASEI 73 >gi|300727912|ref|ZP_07061290.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14] gi|299774754|gb|EFI71368.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14] Length = 523 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 145/565 (25%), Positives = 248/565 (43%), Gaps = 61/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D ++ E ES QA+F Sbjct: 1 MTSELVIDA-QQKEISIALLEDKQLVEYQNESR---------------------QASF-S 37 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G I + + L+ N D D H +S Sbjct: 38 VG-----------------NIYVAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ + + ++ IQ V+K Q + Sbjct: 81 QKYVKQVESDNRKLYPFAKATTQPDLD------------------KEGSIQNVLKAGQDV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +T LS AGRY VL+P K S+ + LK++ ++ Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRYLVLIPFGDKVSVSSKIKKGEERAR-LKQLIHSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L++ W++ P L+YEE + Sbjct: 182 -PNNCGVIVRTVAEGKRVAELDAEMKILVKRWEDAISKVQKTQKRPQLIYEETGRAVAML 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E E K+++ L+ P IV+ Y PIF I Q+ S Sbjct: 241 RDLFNPTYENIYVNDENVMNEVKNYVSLIAPEKTNIVKLYSGKVPIFDNFNITKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V Y+II TEAL +DVNSG TRE E AL NL AA+E+ARQLRLRD+ Sbjct: 301 GKTVNYKHGAYLIIEHTEALHVVDVNSGNRTREKGQEANALDVNLGAADELARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM ++ + + +++ ++++KDRA+ + +S FGL++++RQR+R ++ + Sbjct: 361 GGIIVVDFIDMNLAEDRQLLYERMCKNMQKDRAKHNILPLSKFGLMQITRQRVRPAIDVN 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + C C G G I+S ++ R ++ + + ++ + V ++ + Sbjct: 421 VEETCPSCFGTGKIKSSILFTDTLERKIDRLVNKIGVKKFYLYVNPYVAAFINKGFISLK 480 Query: 540 VEYEARFGVSINVVIGIELADKLFY 564 +++ ++G +++V +++ + Sbjct: 481 RKWQFKYGFGVHIVPSQKMSFLQYE 505 >gi|149369656|ref|ZP_01889508.1| ribonuclease G [unidentified eubacterium SCB49] gi|149357083|gb|EDM45638.1| ribonuclease G [unidentified eubacterium SCB49] Length = 513 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 131/567 (23%), Positives = 239/567 (42%), Gaps = 63/567 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++I S +E + +D R+ EL E E K G+IYLAK+ + P L AAFV+ Sbjct: 1 MNSELII-RSSSQEVDFALFKDGRLIELHKEEESNKFSVGDIYLAKIRKTVPGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P + + S D + D + + Sbjct: 60 VGYEKDAFLHYHDLGP-----------KIGSLLKFVKRVSTGKLKDYSLKDFPLEKEIEK 108 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A S ++ I+ + +Y + +R + Sbjct: 109 NGGINDAIKSNQSILVQIVKEPISTKGPRISSE--------LSIAGRYIVLVPFSDRISI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I +E ++ + T + G Sbjct: 161 SQKIDSKEEKDRLKRLITSIRPKGF----------------------------------- 185 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RT + E+ +D + L+ W+ + + + P V E + +R Sbjct: 186 -----GVIIRTVAEGKKVAELDKDLQNLIDRWNAMCKKLHGAHHPSKVLSELDRGASILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I + E Y + KD+++ + P IV+ ++ PIF + G++ Q+ + Sbjct: 241 DVFNDSFTNICIDDETLYLQIKDYVQSIAPDKENIVKLHDSNVPIFEKFGVDRQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V+ Y++I TEA+ IDVNSG RS + EDTAL+ N+ AA E+ARQLRLRD+ Sbjct: 301 RSVSSTKGTYLVIEHTEAMHVIDVNSGNRSNKSKNQEDTALEVNIIAATEVARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM + KN +++ ++E +K DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMSQAKNRKALYDHMREEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + +G I + +V I V+ L + + ++ H + +L + Sbjct: 421 TREEAPG-TESGEIEAPITVVNRITEDVKRILSKDYNK-VTLNAHPFIAAFLTKGFPSMR 478 Query: 540 VEYEARFGVSINVVIGIELADKLFYIE 566 ++ + V ++ + Sbjct: 479 HKWFMEHKKWVKVQPRDAYTYLEYHFQ 505 >gi|325143877|gb|EGC66192.1| ribonuclease G [Neisseria meningitidis M01-240013] gi|325200855|gb|ADY96310.1| ribonuclease G [Neisseria meningitidis H44/76] Length = 496 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 88 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 147 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 148 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 207 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 208 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 267 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 268 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 327 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 328 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 387 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 388 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 447 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 448 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 493 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + + GNIYL V RV P +Q+AF+D G Sbjct: 17 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 75 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 76 RAAFLHIVDV 85 >gi|226943397|ref|YP_002798470.1| Ribonuclease E/G [Azotobacter vinelandii DJ] gi|226718324|gb|ACO77495.1| Ribonuclease E/G [Azotobacter vinelandii DJ] Length = 485 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 127/400 (31%), Positives = 211/400 (52%), Gaps = 3/400 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G+KGA +TT+LS+ RY V MP T + Sbjct: 83 NIAALVHEGQSLVVQVTKDPIGSKGARLTTHLSIPSRYLVYMPRTRHVGISLKIEEEAER 142 Query: 229 RKNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + K + + G ILRTA EI D YL RLWD + + AP Sbjct: 143 ERLKKVVADCVASEGIEHEGGFILRTAAEGAGADEILADIRYLRRLWDQIAGQIQTASAP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ +L R +RDL I +I + + +++ F+ LMP + Y PI Sbjct: 203 AVIYEDLSLALRTLRDLVSPRIEKIRIDSRETFQKVLQFVSELMPEITDHLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY+II+ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQRALERKVMLKSGGYLIIDPAEAMTTIDVNTGAFVGHRTLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AAIAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITVLGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C+ C+G G +++ ++ I R + Y A +V + Sbjct: 383 QMTRKRTRESLEQVLCEPCSCCQGRGKLKTAETICYEIFREILREARAYQAEGYLVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G I + + + + + Sbjct: 443 KVVDRLLDEESGNVADLEAFIGRPIKFQVEGTYSQEQYDV 482 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY +V RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHAAEI 73 >gi|225077307|ref|ZP_03720506.1| hypothetical protein NEIFLAOT_02366 [Neisseria flavescens NRL30031/H210] gi|224951354|gb|EEG32563.1| hypothetical protein NEIFLAOT_02366 [Neisseria flavescens NRL30031/H210] Length = 521 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 203/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 113 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 172 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + L A G I+RT + + +++ D YL ++W+++++ A Sbjct: 173 QRIEDDAERSSLRERLNNLLPENACHGYIIRTNAENASDNQLQSDINYLTKVWEHIQKQA 232 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD++ D +I+V + +R F + + + + Sbjct: 233 KIQPPETLLYQDLPLSLRVLRDMFSLDTHKILVDSTENHRRMTQFAEQYVQGALGRIELF 292 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F IE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 293 KGERPLFETHNIEQEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 352 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 353 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEVHREAVLQELAKALSFDRTRVTLNGF 412 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y Sbjct: 413 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAF 472 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 473 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 518 >gi|262378962|ref|ZP_06072119.1| ribonuclease G [Acinetobacter radioresistens SH164] gi|262300247|gb|EEY88159.1| ribonuclease G [Acinetobacter radioresistens SH164] Length = 488 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 122/412 (29%), Positives = 215/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + + + + + E+++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 75 NDMIWPRNQPTPNVFELLQPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPFGNHI 134 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ + ++ VI+RTA + +I +D YL +LW+ Sbjct: 135 GVSQRIESEEERDR-LRSLIEKIQQQHDLPGSVIVRTAADGVDEADIAQDMAYLAKLWEY 193 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ + P L++EE L +R IRDL ++ ++I + + Y + +F++ +P Sbjct: 194 IQRKQRATTVPSLIFEELPLPQRVIRDLANEETAKIYIDSREIYTKLSEFIEEFVPGMQD 253 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E L QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 254 RLIHYPGERPLFDLYNVEEDLQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + I RQLRLR+L G+I++DFIDM+E + V + ++ L++D A+ Sbjct: 314 LEDTVFKTNMEATQVIVRQLRLRNLGGIIIIDFIDMQEATHRNEVMHQFEKMLERDHAKT 373 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 ++ +S GL+EM+R+R R S+ + C C+G GY+++ +V I R + Y + Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCEACPTCQGRGYVKTAETVCYEIFREIMRYARAF 433 Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + V H V+ LL + + + E I + + + I Sbjct: 434 ESQSGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 485 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M++++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 5 MSDELLINVT-PMECRVALVENGTVNELFVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 64 IGLSRTAFLHINDM 77 >gi|325273351|ref|ZP_08139617.1| ribonuclease G [Pseudomonas sp. TJI-51] gi|324101514|gb|EGB99094.1| ribonuclease G [Pseudomonas sp. TJI-51] Length = 485 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 124/400 (31%), Positives = 208/400 (52%), Gaps = 3/400 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP +S + Sbjct: 83 NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVGISLKIEDEAER 142 Query: 229 RKNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + + G ILRTA EI +D YL RLW+ + AP Sbjct: 143 ERLKQVVSNCMESENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGSQIKTCGAP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTMQFVSELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR++ G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNIGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C+G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E EA G +I + + + + + Sbjct: 443 KVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482 >gi|330955352|gb|EGH55612.1| ribonuclease E [Pseudomonas syringae Cit 7] Length = 424 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 149/342 (43%), Positives = 213/342 (62%) Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 M+LW ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ + Sbjct: 1 MQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQV 60 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 MP YA ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R Sbjct: 61 MPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSAR 120 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +T+ IE+TALQTNLEAAEEIARQLRLRD+ GLIV+DFIDM KN R+VE+K++ESL+ Sbjct: 121 ATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLE 180 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 DRARVQ+G IS FGLLEMSRQR+R S+ ES+ VC C G G IR S++L+ILR +E Sbjct: 181 ADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIE 240 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 E L+ + V +LLN+KR +I + E R I ++ +L F +++ Sbjct: 241 EEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDQLETPHFEVQRL 300 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++ + A + + I + L ++ Sbjct: 301 RDDSPEAHSSQTSYEIAAAAAEVEEIAPLAAATRTLVRQEAA 342 >gi|26987673|ref|NP_743098.1| ribonuclease, Rne/Rng family [Pseudomonas putida KT2440] gi|24982357|gb|AAN66562.1|AE016284_10 cytoplasmic axial filament protein [Pseudomonas putida KT2440] Length = 485 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 131/401 (32%), Positives = 216/401 (53%), Gaps = 5/401 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP +S IS KI + + Sbjct: 83 NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141 Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R+ LK++ + G ILRTA EI +D YL RLW+ + A Sbjct: 142 RERLKQVVSDCMDGENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGTQIKTCGA 201 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y P Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNL Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+ + I+ GL Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGL 381 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R R S+ + + C C+G G +++ ++ I R + Y A V + Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E EA G +I + + + + + Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHASEI 73 >gi|121634292|ref|YP_974537.1| hypothetical protein NMC0430 [Neisseria meningitidis FAM18] gi|120865998|emb|CAM09735.1| hypothetical protein NMC0430 [Neisseria meningitidis FAM18] Length = 497 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 205/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + + GNIYL V RV P +Q+AF+D Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIDLE 76 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 77 RAAFLHIVDV 86 >gi|119944882|ref|YP_942562.1| ribonuclease G [Psychromonas ingrahamii 37] gi|119863486|gb|ABM02963.1| RNAse G [Psychromonas ingrahamii 37] Length = 491 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 121/412 (29%), Positives = 200/412 (48%), Gaps = 2/412 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 K + I ++++ Q ++VQ+VK+ G KGA +TT ++L RY V MP T Sbjct: 78 ECVAKNEKAKFKVADISQLVRPGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGTG 137 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + LK IA+G V G I+RTA + E+ D +L+R+W Sbjct: 138 HVGVSQRIESAQERER-LKVIAQGCCVNDLGGFIIRTAADGAPEKELINDAAFLLRVWRK 196 Query: 275 V-RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 V + L+Y + L R +RD ++I + + + + F +P Sbjct: 197 VLTRRKRTASKNRLLYRDLGLAFRILRDFVGEEIDRVRIDSRLNFSLIQKFTHDFVPELE 256 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 257 DKIECYRGKSPIFDLFDVENEVQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 316 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 +E+T TN+EA + IARQLRLR+L G+I++DFIDM+ ++ R V L+++L KDR + Sbjct: 317 NLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMQSVEHKRRVFNSLEQALSKDRVK 376 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 + S GL+EM+R+R + S+ VC C G GYI++ +V +LR + Sbjct: 377 TNINDFSPLGLIEMTRKRTQESLEHIFCGVCEQCSGRGYIKTVETVCYEVLREILRVNRA 436 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +V+T V L + + E + + + F + Sbjct: 437 YDADRFVVYTSPKVAEALTGDESHNLAELVLFMEKPVKINAEPLYGQEQFDV 488 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++EL E + K I GNIY KV+RV +QAAFVD Sbjct: 1 MSVELLMNIT-PTETRVALVEGGVLQELHIERQATKGIVGNIYKGKVSRVLAGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G + FL +I P Sbjct: 60 IGLEKAAFLHASDIVP 75 >gi|325982227|ref|YP_004294629.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212] gi|325531746|gb|ADZ26467.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212] Length = 484 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 119/410 (29%), Positives = 213/410 (51%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 D + I++++ ++VQ++K+ KGA ++T +SLAGR V +P S Sbjct: 72 DIRDPKPEGDVMKPIEKLLYEGSSIVVQVIKDAISTKGARLSTQISLAGRLLVYLPQESH 131 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R + +++ + L G I+RT + + +++ D EYL RLW ++ Sbjct: 132 IGISQRIEDDSERELLREKLQQILPEDEAGGYIIRTMAETADENDLRADLEYLHRLWRDI 191 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 ++ + AP L+Y++ +L R +RD +D + I+V + Y++ F + M A Sbjct: 192 QQKSATISAPVLLYQDLDLGHRVLRDFIDEDTARILVDSRENYQKLVKFAQSYMTCIAER 251 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F +E +++ V L S GY+II+QTEAL ++DVN+G Sbjct: 252 ITLYTGDRPLFDLYAVEEEIERSLAKRVNLKSGGYLIIDQTEALTTMDVNTGGFIGVRNF 311 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLR+R+L G+I++DFIDME + +V + ++L KDR R+ Sbjct: 312 DDTVFKTNLEAAQVIARQLRMRNLGGIIIIDFIDMESDDHKNAVLTEFNKALSKDRTRIT 371 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V S GL+EM+R+R R S+ + C C+G G +R+ ++ ILR + Q+ Sbjct: 372 VNGFSTLGLVEMTRKRTRESLAHVLCETCPTCQGRGEVRTAQTICYEILRELLRESRQFD 431 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A+ + V+ L+++ ++ + I++ I + + + + Sbjct: 432 ANEFRILASQQVIDLFLDEESQSLAQLGDFIAKPISLQIEESYSQEQYDV 481 >gi|261867590|ref|YP_003255512.1| ribonuclease G [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412922|gb|ACX82293.1| ribonuclease, Rne/Rng family [Aggregatibacter actinomycetemcomitans D11S-1] Length = 491 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 132/485 (27%), Positives = 230/485 (47%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E G++ + A E+ + + A Sbjct: 12 PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I +++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 72 SDIVSHTECVDENEQKQFV------VKDISQLVHEGQDIVVQVVKDPLGTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + LKE+A L G G I+RTA +++++ Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERAR-LKELALPLCDELG-GFIIRTAAEGASELDL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++D E+L RLW V E ++Y E L +R +RD + I + + E Sbjct: 184 QQDAEFLKRLWRKVLERRAKYPTRSMLYGELALTQRILRDFIGAKLDRIHIDSRLCFNEV 243 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K F + +P+ + Y P+F +E + + V L S GY+II QTEA+ + Sbjct: 244 KQFTEEFIPNLTDKLILYSGNQPLFDVYSVETGIHNALDKRVNLKSGGYLIIEQTEAMTT 303 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 ID+N+G +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+++++ V + Sbjct: 304 IDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQKEEHRTRVLE 363 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+E+L D + V + GL+EM+R+R R S+ C C+G G +++ +V Sbjct: 364 SLQEALAGDPVKTNVNGFTQLGLVEMTRKRTRESLERVLCGDCPACQGRGRVKTVETVCY 423 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELAD 560 I+R + + + +V+ V YL+N++ + E E G I V + Sbjct: 424 EIMREIIRVHHVFASEQFVVYASHAVADYLINEEFHGLLAELEVFIGKQIQVKTEVFYTQ 483 Query: 561 KLFYI 565 + F + Sbjct: 484 EQFDV 488 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETR+ ++ ++E+ E + K+ I GNIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PNETRIALVETGILKEVHIERQGKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|255065070|ref|ZP_05316925.1| cytoplasmic axial filament protein [Neisseria sicca ATCC 29256] gi|255050491|gb|EET45955.1| cytoplasmic axial filament protein [Neisseria sicca ATCC 29256] Length = 497 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 203/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + L A G I+RT + T ++ D YL ++W++++E A Sbjct: 149 QRIEDDAERHSLRERLTNLLPEDACHGYIIRTNAENATDEQLLSDIHYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD++ D +I+V + +R F + + + + Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSLDTQKILVDSTENHRRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ ++ I R + +Y + Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTICYEIQREIVREARRYDVQSF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 L++ + +ETRV VL +N + EL E + GNIYL V RV P +Q+AF+D G R Sbjct: 19 LVNIT-PQETRVAVLEENNICELHIERNSGHSLVGNIYLGVVRRVLPGMQSAFIDIGLER 77 Query: 66 HGFLPFLEI-----HPDYYQ 80 FL +++ +PD Q Sbjct: 78 AAFLHIVDVLEQRRNPDETQ 97 >gi|29840567|ref|NP_829673.1| ribonuclease G [Chlamydophila caviae GPIC] gi|29834917|gb|AAP05551.1| ribonuclease G [Chlamydophila caviae GPIC] Length = 510 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 141/425 (33%), Positives = 234/425 (55%), Gaps = 3/425 (0%) Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 N K + I+E++K +LVQ+VKE G KGA +T+ +S Sbjct: 75 ENSKKFEQMFDMDFDVLPKEDSEKPEAPIEELLKLDSPVLVQVVKEPIGTKGARLTSNIS 134 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 + GRY VL+PN+ +SRKI +P R LK++ R E+P MG+I RTA + + Sbjct: 135 IPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFEMPQDMGLICRTASVLASTDAL 193 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + L+ W + E ++ P L+YEE +++K+A+ K+ +++ Y++ Sbjct: 194 INEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYKRLLIDDYSTYQKC 253 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K +K P + + Y D P+F R IE ++D + ++ L S GY+ ++TEA+ + Sbjct: 254 KRMLKKYSPDSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSGGYLFFDKTEAMHT 313 Query: 382 IDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ GL+++DFIDM+ +KN R V Sbjct: 314 IDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVL 373 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++LKE +K D AR + ++S FGL+EM+RQR R S++++ C YC G I++ SV Sbjct: 374 ERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPYCSGNAIIKTPESVV 433 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELA 559 + I R +++ + ++ + H ++ Y+ +K ++ + + L Sbjct: 434 IEIERDLKKVINHKEHTHLCLVVHPEIAGYMKQEKDDDELIRLAKHLKAKLQINTSDSLH 493 Query: 560 DKLFY 564 + Sbjct: 494 LNHYQ 498 >gi|313497306|gb|ADR58672.1| CafA [Pseudomonas putida BIRD-1] Length = 485 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 5/401 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP +S IS KI + + Sbjct: 83 NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141 Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R LK++ + G ILRTA EI +D YL RLW+ + A Sbjct: 142 RDRLKQVVSDCMDGENIKDAGGFILRTAAEGARAEEIVQDIRYLRRLWEQIGTQIKTCGA 201 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y P Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNL Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+ + I+ GL Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGL 381 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R R S+ + + C C+G G +++ ++ I R + Y A V + Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E EA G +I + + + + + Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHASEI 73 >gi|148546220|ref|YP_001266322.1| ribonuclease [Pseudomonas putida F1] gi|148510278|gb|ABQ77138.1| RNAse G [Pseudomonas putida F1] Length = 485 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 131/401 (32%), Positives = 216/401 (53%), Gaps = 5/401 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G KGA +TT LS+ RY V MP +S IS KI + + Sbjct: 83 NITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAE 141 Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R+ LK++ + G ILRTA EI +D YL RLW+ + A Sbjct: 142 RERLKQVVSDCMDSENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGTQIKTCGA 201 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y P Sbjct: 202 PTVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERP 261 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNL Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNL 321 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+ + I+ GL Sbjct: 322 EAATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGL 381 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R R S+ + + C C+G G +++ ++ I R + Y A V + Sbjct: 382 VQMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLAN 441 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E EA G +I + + + + + Sbjct: 442 QKVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHASEI 73 >gi|237654476|ref|YP_002890790.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T] gi|237625723|gb|ACR02413.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T] Length = 484 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 113/410 (27%), Positives = 199/410 (48%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + I++++ Q L+VQ++K+ G KGA ++T +SLAGR V +P Sbjct: 72 DIWSDRQNGEGARPIEKILTEGQSLMVQVLKDPIGTKGARLSTQVSLAGRLLVYLPQEKH 131 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R + + G I+RT S T E+ D YL +LW + Sbjct: 132 IGISQRIEDEAGREALRSRLVALVPEDEPGGFIVRTMAESATDAELAADIAYLRKLWREI 191 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + P L++E+ L +R +RDL + S I V + +++ F P + Sbjct: 192 SGSTVGLFPPKLLHEDLGLGQRTLRDLVTDETSRIRVDSRENFQKLTAFAAEYTPQVLPL 251 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F +E ++ V L S GY+II+QTEA+ ++DVN+G Sbjct: 252 LEHYSGDRPLFELYSVEEEIQKALARRVDLKSGGYLIIDQTEAMTTVDVNTGGFVGARNF 311 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEA++ IARQLRLR+L G+I++DFIDME ++ V ++ +++L +D ++ Sbjct: 312 DDTIFKTNLEASQAIARQLRLRNLGGIIIIDFIDMENVEHREMVLEEFRKALSRDHTKMS 371 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 + + GL+EM+R+R R S+ + C C G G +++ +V ILR + Q+ Sbjct: 372 INGFTALGLVEMTRKRTRESLAHLLCEPCPTCSGRGEVKTARTVCYEILRELLREARQFN 431 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A V +V+ L+++ ++ G +++ + + I Sbjct: 432 AREFRVLAAPNVIDLFLDEESQSLAMLSDFIGKKVSLHAEGSYTQEQYDI 481 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ + LI+ + +ETRV ++ V+EL E + I GN+YL KV RV P +Q+AF+D Sbjct: 1 MSIEFLINFT-PQETRVAIVEQGVVQELHVERTASRGIVGNLYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G R FL +I D Sbjct: 60 IGLERTAFLHVADIWSD 76 >gi|152978585|ref|YP_001344214.1| ribonuclease G [Actinobacillus succinogenes 130Z] gi|150840308|gb|ABR74279.1| ribonuclease, Rne/Rng family [Actinobacillus succinogenes 130Z] Length = 492 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 130/486 (26%), Positives = 230/486 (47%), Gaps = 10/486 (2%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL+ + + + E A G++ + A ++ + + A Sbjct: 12 PNETRVALMDNAELKEVHIERQAKRGIVGNIYKGKVTRVLPGMQSAFVDIGLDKAAFLHA 71 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + V I E+++ Q L+VQ+VK+ KGA +TT ++ Sbjct: 72 SDIVSYTECVDENEQKQFV------VKDIVELVREGQDLVVQVVKDPISTKGARLTTDIT 125 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP S R + + + G I+RTA T+ E+ Sbjct: 126 LPSRYLVFMPENSHVGVSQRIESEEERAR--LKALVEPYCDELGGYIIRTAAEGVTEAEL 183 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 K+D ++L R+W V E ++Y E L +R +RD + I +I + + + E Sbjct: 184 KQDADFLKRVWLKVLERKRKYPTRSMIYGELALAQRVLRDFIGQGIEKIRIDSKLCFNEV 243 Query: 322 KDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 K+F + MP ++V + P+F G+E +++ V L S GY+II QTEA+ Sbjct: 244 KEFTEEFMPELTDKLVLYSGNNQPLFDVYGVESAINAALNKRVNLKSGGYLIIEQTEAMT 303 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +ID+N+G +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+ + V Sbjct: 304 TIDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDDHRNRVI 363 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 + L+E+L +DR + V + GL+EM+R+R R S+ C C+G G++++ +V Sbjct: 364 RSLEEALTRDRVKTNVNGFTQLGLVEMTRKRTRESLEHILCSDCPACQGRGHVKTVETVC 423 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELA 559 I+R + + + V+ V YL+N++ + E E G + + + Sbjct: 424 YEIMREIIRVHHLFASEIFTVYASPAVAEYLINEESHGLLAETEVFIGKRVQIKSEVFYH 483 Query: 560 DKLFYI 565 + F + Sbjct: 484 QEQFDV 489 >gi|229588411|ref|YP_002870530.1| ribonuclease G [Pseudomonas fluorescens SBW25] gi|229360277|emb|CAY47134.1| ribonuclease G [Pseudomonas fluorescens SBW25] Length = 485 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + AP Sbjct: 143 ERLKKVVSDCVAAEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIDAQIKTISAP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + ++ F+ LMP A + Y PI Sbjct: 203 SVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQRTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C+ C+G G +++ +V I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E G +I + + + + + Sbjct: 443 KVVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 482 >gi|255530042|ref|YP_003090414.1| ribonuclease, Rne/Rng family [Pedobacter heparinus DSM 2366] gi|255343026|gb|ACU02352.1| ribonuclease, Rne/Rng family [Pedobacter heparinus DSM 2366] Length = 516 Score = 247 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 144/575 (25%), Positives = 247/575 (42%), Gaps = 61/575 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++ID+S T + ++ D ++ EL K+ N Y Sbjct: 1 MVKELIIDSSPSGVT-IALVEDKQLVEL------HKEQINNNY----------------- 36 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +I+ + G D Sbjct: 37 ---------AVGDIY-------------------------LGRIKKIMPGLNAAFVDVGY 62 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ A + F + +S+I + + + + I EV+ +L Sbjct: 63 EKDAFLHYFDLGPQVQSLIKLTKIKRNGSVNGTLLDNFKLEGDINKAGKISEVVSKNLVL 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 VQI KE KG +++ LS+AGRY VL+P S +IS+KI + +R LK+I ++ Sbjct: 123 PVQIAKEPISTKGPRLSSDLSIAGRYIVLVPF-SNVISISKKIKSNTERNRLKKIIESIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RT + E+++D + W+N + ++ V+ E + IR Sbjct: 182 PK-NFGVIIRTVSEGKGVAELQKDLLDSVAKWENFIKKLPDAEPSKRVWGEMDRTSTLIR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ D + + VS + + + ++ + P +IV+ Y PIF GIE Q+ + Sbjct: 241 DILSTDFTNVYVSDNNLFEDIRSYVHEISPEMEKIVKLYRHKEPIFEHFGIEKQIKNAFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419 V L Y+++ TEAL IDVNSG T E+ ALQ N EAA+EIARQLRLRD+ Sbjct: 301 KTVNLAGGAYLVVEHTEALHVIDVNSGNRTASKENQEENALQVNKEAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G++V+DFIDM + N + + L++ ++ DRA+ + S FGL++++RQR+R + Sbjct: 361 GGIVVIDFIDMHKPANRKMLFDHLRDLMQLDRAKHTILPPSKFGLVQITRQRVRPEMNIV 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T++ C C G G I++ + I ++ L + NI + H + Y+ + Sbjct: 421 TSEKCPACDGTGEIKASIVLMDDIENNLTYILQEQNEKNITLCVHPYIEAYIKKGFISLQ 480 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 ++ +FG I + F+ + Sbjct: 481 WKWFFKFGQRIKIKAVPSYNLTEFHFISSKDEEIK 515 >gi|114564886|ref|YP_752400.1| ribonuclease G [Shewanella frigidimarina NCIMB 400] gi|114336179|gb|ABI73561.1| RNAse G [Shewanella frigidimarina NCIMB 400] Length = 496 Score = 247 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 123/396 (31%), Positives = 196/396 (49%), Gaps = 3/396 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP +S R + Sbjct: 101 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIELEDERQ 160 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + V G I+RTA + + E+ +D +L R+W V E L+Y Sbjct: 161 R--LKNITLPYVDDDGGFIIRTAAENVGEDELAQDAAFLRRVWAKVSERR-KRKGVTLLY 217 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ L R IRD ++ I V + Y E + F++ MP A + Y P PIF Sbjct: 218 QDLALPVRIIRDFVGTELDHIQVDSRRTYAELQQFVREFMPEIADKIEHYAGPAPIFELY 277 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E ++ +V L S GY+II+QTEA+ ++D+N+G +E+T TNLEA + Sbjct: 278 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 337 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM K++ V + L +L DR + V S GL+EM+R Sbjct: 338 IARQLRLRNLGGIIIIDFIDMLSKEHQARVLESLNAALALDRVKTSVSGFSGLGLVEMTR 397 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ C CKG G +++ +V+ I R + Y A +++ V + Sbjct: 398 KRTRESLEHVVCGECPSCKGTGTMKTIETVSYEIFREIIRLDRAYKADEFLLYCSPAVYM 457 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + E E G I + + + Sbjct: 458 SFSGDESHLLAELEVYIGKRIRLQNEPLYIQSKYDV 493 >gi|325204740|gb|ADZ00194.1| ribonuclease G [Neisseria meningitidis M01-240355] Length = 497 Score = 247 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 206/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPEETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + + L A G I+RT + T +++ D +YL ++W++++E A Sbjct: 149 QRIEDDAERSSLRERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD+ D +I+V + F + + + + Sbjct: 209 KIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F +E ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A + Sbjct: 389 TSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + S+V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAASNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L++ + +ETRV VL +N + EL E + + GNIYL V RV P +Q+AF+D G Sbjct: 18 ILVNIT-PQETRVAVLEENNICELHIERNSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLE 76 Query: 65 RHGFLPFLEI 74 R FL +++ Sbjct: 77 RAAFLHIVDV 86 >gi|300703517|ref|YP_003745119.1| ribonuclease g (RNAse g) [Ralstonia solanacearum CFBP2957] gi|299071180|emb|CBJ42496.1| ribonuclease G (RNase G) [Ralstonia solanacearum CFBP2957] Length = 489 Score = 247 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 1/412 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + I++ + Q L VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 75 HPRDAKDAPPTPHVAIEKTLFEGQALTVQVIKDPIGTKGARLSTQISIAGRTLVYLPQDP 134 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 + + + + G I+RT T E+ D YL ++W Sbjct: 135 HIGISQKIGNETDREALRQRVTGMVPADERGGFIVRTIAEESTDEELANDVAYLRKIWAT 194 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +R A AP ++Y++ NL +R +RD D I V + Y++ +F + P+ Sbjct: 195 IRHNATTLPAPSILYQDLNLAQRVLRDFVTDDTRSIQVDSRENYQKLVEFAQEYTPAVVE 254 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF IE +++ V L S GY++I+QTEA+ +IDVN+G Sbjct: 255 RLTHYTGERPIFDLYNIEAEVERALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARN 314 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +DT +TNLEAA IARQLRLR+L G+I++DFIDME ++ +V +L+ +L +DR R+ Sbjct: 315 FDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMESTEHRDAVLAELRRALARDRTRI 374 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 V + S GL+EM+R+R R S+ + C C+G G +++ +V ILR + Q+ Sbjct: 375 TVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQVKTPRTVCYDILREIMRESRQF 434 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI-ELADKLFYI 565 + V+ L ++ + G I++ + + + + I Sbjct: 435 NPREFRILASQSVIDLFLEEESQHLAMLGDFIGKPISLQVESAAASQEQYDI 486 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +L++ + +ETRV +++ V+EL E + + GNIYL KV RV P +Q+AF+D Sbjct: 1 MSEDILVNIT-PQETRVAIVQQAAVQELHIERTLTRGLVGNIYLGKVVRVLPGMQSAFID 59 Query: 61 YGGNRHGFLPFLEI-HP 76 G R FL +I HP Sbjct: 60 IGLERAAFLHVADIWHP 76 >gi|46581458|ref|YP_012266.1| ribonuclease [Desulfovibrio vulgaris str. Hildenborough] gi|46450880|gb|AAS97526.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris str. Hildenborough] gi|311235111|gb|ADP87965.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris RCH1] Length = 489 Score = 247 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 159/419 (37%), Positives = 241/419 (57%), Gaps = 4/419 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + P K K+ +Q+V+K Q +LVQ+VKE GNKGA +T+ Sbjct: 69 AEKNGFLQIDEVHPEYYISPHDPTKGKKYPLMQKVLKAGQEVLVQVVKEPTGNKGAFLTS 128 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSL GR+ VL P + +SRK+ + +R L+E+ GL G+GVI+RT A +K Sbjct: 129 YLSLPGRFLVLTPGREQIG-VSRKVEDDEERSRLREMLEGLSAGPGLGVIVRTVSAGTSK 187 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 ++RD ++L RLW +VR+ P +Y+E +L R++RD D+SE+ V Sbjct: 188 TTLQRDLQFLKRLWKDVRKKGTTEQTPCQIYQEPDLATRSVRDYLTDDVSEVWVDDAATA 247 Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++F+ L+ P A +V+ + + ++ R GI QLD ++ EV LPS G ++ +QTE Sbjct: 248 ELIREFVTLVFPRKASLVKLHTDPERTLWERFGIRKQLDQIYSREVILPSGGRLVFDQTE 307 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL++ID+NSG+ + E AL+TN EAAE IA+QLRLRD+ G +V+DFI+M + + R Sbjct: 308 ALMAIDINSGKIAGKTNFESMALKTNTEAAESIAQQLRLRDIGGQVVIDFIEMRDHNHWR 367 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK L+ ++K DRAR VG +S FGLL++ RQR SS L T + C C+G+G R+ Sbjct: 368 EVEKTLRNAMKGDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCRGSGLRRNME 427 Query: 498 SVALSILRSVEEYLLQYTAHNIIV--HTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 +L LR + L + T ++ YLLN KR ++E E RF + + V Sbjct: 428 WQSLQALRELHRQLRALPQGQCVHVFETSPELAFYLLNHKRERLLELERRFNLRLEVRP 486 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 45/80 (56%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM I E+ V + D V E E H+ + KGNIY + ++ +LQAAFV+YG Sbjct: 9 RKMYISVLPGEQVEVALSEDGAVTEYYVEMLHQAKTKGNIYKGVINNIDTNLQAAFVNYG 68 Query: 63 GNRHGFLPFLEIHPDYYQIP 82 ++GFL E+HP+YY P Sbjct: 69 AEKNGFLQIDEVHPEYYISP 88 >gi|332292028|ref|YP_004430637.1| ribonuclease, Rne/Rng family [Krokinobacter diaphorus 4H-3-7-5] gi|332170114|gb|AEE19369.1| ribonuclease, Rne/Rng family [Krokinobacter diaphorus 4H-3-7-5] Length = 516 Score = 247 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 133/564 (23%), Positives = 231/564 (40%), Gaps = 63/564 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S +L+D ++ EL E + K G+IY+A V + L AAFV+ Sbjct: 1 MNKELII-RSSSSVVDFALLKDGKLIELHKEEDKNKFNVGDIYIANVRKTVSGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P ++P + VT G + + + Sbjct: 60 VGYEKDAFLHYHDLGP---KLPT----------------LQKYIKSVTTGKLKDYSLQNF 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 I + E + ++ G +Y + +R + Sbjct: 101 TFEKDIDKNGKIAEVLKSKQSVLVQIAKEPISTKGPRISSELSIAGRYIVLVPFSDRISI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I +E + + T + G Sbjct: 161 SQKIESKEEKARLKRLVTSIRPKGF----------------------------------- 185 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RT E+ +D + L+ W + + N+ P V E N +R Sbjct: 186 -----GVIVRTVAQGVKVAELDKDLQNLVDKWTTMSKKIPNAHHPSKVLGEMNRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I V E Y + KD++ + P IV+ Y + PIF + GIE Q+ + Sbjct: 241 DIFNDSFTSITVDDETLYYQIKDYLSEIAPHKENIVKLYNNQLPIFEKFGIERQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEAL +DVNSG RS + EDTAL+ N+ AA EIARQL LRD+ Sbjct: 301 QTVSMSRGAYLVIEHTEALHVVDVNSGNRSNKAKSQEDTALEVNMIAASEIARQLSLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IV+DFIDM + ++ R + LK+ +K DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVIDFIDMGKAEHRRQLFNHLKDEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + G+ I + + + + L + A + +H H V Y+ + Sbjct: 421 TREENPN-GGSNEIEAPIVIVEKLQGQLNRIL-KSGAKKVTLHAHPFVAAYITKGFPSIR 478 Query: 540 VEYEARFGVSINVVIGIELADKLF 563 ++ + V+ + Sbjct: 479 SKWFLDHKKWVKVMPRDAYTYLEY 502 >gi|284008672|emb|CBA75316.1| ribonuclease G [Arsenophonus nasoniae] Length = 474 Score = 247 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 201/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V M Sbjct: 61 HTECIAGDEQKNFHVRDIGELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMLG 120 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + ++ + L G I+RTA E+ +D +L RLW Sbjct: 121 ASHVGVSQRIESEEERQR--LKSIVELFCDENGGFIIRTAAEGVGDDELAQDAAFLKRLW 178 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + E + +Y E L R IRD + I V + + K+F+ +P Sbjct: 179 SKIVERKKRHKSRMQIYGELALAHRIIRDFAGASLDRIRVDSKLTFVSLKEFIDEYVPEM 238 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y+ P PI +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 239 TVKLELYQGPLPILDLYDVEKEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 298 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA++ IARQLRLR+L G+I++DFIDM + ++ R V L++SL KDR Sbjct: 299 RNLEETIFNTNIEASQAIARQLRLRNLGGIIIIDFIDMLDPEHRRRVLASLEQSLLKDRV 358 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 359 KTTINEFSQLGLVEMTRKRTRESLEHVLCDECPTCQGRGTVKSVETVCYEILREIVRINR 418 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A+ +V+ VV L + + E E G S+ V I + + F + Sbjct: 419 TIDANRFLVYASPAVVEALNGDESHVLAEVEIFVGKSVKVQIESLYSQEQFDV 471 Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHP 76 + + ++E+ E E K+ I GNIY +V+RV P +QAAFVD G + FL +I P Sbjct: 1 MAYIDGGVLQEIHIEREAKRGIVGNIYKGRVSRVLPGMQAAFVDIGLEKSAFLHASDIMP 60 >gi|312958982|ref|ZP_07773501.1| ribonuclease G [Pseudomonas fluorescens WH6] gi|311286752|gb|EFQ65314.1| ribonuclease G [Pseudomonas fluorescens WH6] Length = 485 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 127/399 (31%), Positives = 208/399 (52%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ + Sbjct: 84 ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVGISLKIEDEGERE 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + K + + G ILRTA EI D YL RLWD + AP Sbjct: 144 RLKKVVSDCVAAEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGAQIKTIGAPS 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ L R +RDL I +I + + ++ F+ LMP A + Y PIF Sbjct: 204 VIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQRTTQFVAELMPEIADRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + + C+ C+G G +++ +V I R + Y A V + Sbjct: 384 MTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E G +I + + + + + Sbjct: 444 VVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 482 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E K+ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQKRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|255318773|ref|ZP_05359999.1| ribonuclease, Rne/Rng family [Acinetobacter radioresistens SK82] gi|255304029|gb|EET83220.1| ribonuclease, Rne/Rng family [Acinetobacter radioresistens SK82] Length = 484 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 122/412 (29%), Positives = 215/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + + + + + E+++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 71 NDMIWPRNQSTPNVFELLQPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPFGNHI 130 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ + ++ VI+RTA + +I +D YL +LW+ Sbjct: 131 GVSQRIESEEERDR-LRSLIEKIQQQHDLPGSVIVRTAADGVDEADIAQDMAYLAKLWEY 189 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ + P L++EE L +R IRDL ++ ++I + + Y + +F++ +P Sbjct: 190 IQRKQRATTVPSLIFEELPLPQRVIRDLANEETAKIYIDSREIYTKLSEFIEEFVPGMQD 249 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E L QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 250 RLIHYPGERPLFDLYNVEEDLQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 309 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + I RQLRLR+L G+I++DFIDM+E + V + ++ L++D A+ Sbjct: 310 LEDTVFKTNMEATQVIVRQLRLRNLGGIIIIDFIDMQEANHRNEVMHQFEKMLERDHAKT 369 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 ++ +S GL+EM+R+R R S+ + C C+G GY+++ +V I R + Y + Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCEACPTCQGRGYVKTAETVCYEIFREIMRYARAF 429 Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + V H V+ LL + + + E I + + + I Sbjct: 430 ESQSGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 481 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M++++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 1 MSDELLINVT-PMECRVALVENGTVNELFVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 60 IGLSRTAFLHINDM 73 >gi|120601371|ref|YP_965771.1| ribonuclease [Desulfovibrio vulgaris DP4] gi|120561600|gb|ABM27344.1| ribonuclease, Rne/Rng family [Desulfovibrio vulgaris DP4] Length = 489 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 159/419 (37%), Positives = 241/419 (57%), Gaps = 4/419 (0%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N + + + P K K+ +Q+V+K Q +LVQ+VKE GNKGA +T+ Sbjct: 69 AEKNGFLQIDEVHPEYYISPHDPNKGKKYPLMQKVLKAGQEVLVQVVKEPTGNKGAFLTS 128 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 YLSL GR+ VL P + +SRK+ + +R L+E+ GL G+GVI+RT A +K Sbjct: 129 YLSLPGRFLVLTPGREQIG-VSRKVEDDEERSRLREMLEGLSAGPGLGVIVRTVSAGTSK 187 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 ++RD ++L RLW +VR+ P +Y+E +L R++RD D+SE+ V Sbjct: 188 TTLQRDLQFLKRLWKDVRKKGTTEQTPCQIYQEPDLATRSVRDYLTDDVSEVWVDDAATA 247 Query: 319 REAKDFMKLLMPSYARIVRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++F+ L+ P A +V+ + + ++ R GI QLD ++ EV LPS G ++ +QTE Sbjct: 248 ELIREFVTLVFPRKASLVKLHTDPERTLWERFGIRKQLDQIYSREVILPSGGRLVFDQTE 307 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL++ID+NSG+ + E AL+TN EAAE IA+QLRLRD+ G +V+DFI+M + + R Sbjct: 308 ALMAIDINSGKIAGKTNFESMALKTNTEAAESIAQQLRLRDIGGQVVIDFIEMRDHNHWR 367 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK L+ ++K DRAR VG +S FGLL++ RQR SS L T + C C+G+G R+ Sbjct: 368 EVEKTLRNAMKGDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCRGSGLRRNME 427 Query: 498 SVALSILRSVEEYLLQYTAHNIIV--HTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 +L LR + L + T ++ YLLN KR ++E E RF + + V Sbjct: 428 WQSLQALRELHRQLRALPQGQCVHVFETSPELAFYLLNHKRERLLELERRFNLRLEVRP 486 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 45/80 (56%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM I E+ V + D V E E H+ + KGNIY + ++ +LQAAFV+YG Sbjct: 9 RKMYISVLPGEQVEVALSEDGAVTEYYVEMLHQAKTKGNIYKGVINNIDTNLQAAFVNYG 68 Query: 63 GNRHGFLPFLEIHPDYYQIP 82 ++GFL E+HP+YY P Sbjct: 69 AEKNGFLQIDEVHPEYYISP 88 >gi|170723439|ref|YP_001751127.1| ribonuclease [Pseudomonas putida W619] gi|169761442|gb|ACA74758.1| ribonuclease, Rne/Rng family [Pseudomonas putida W619] Length = 485 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 124/399 (31%), Positives = 209/399 (52%), Gaps = 3/399 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G+KGA +TT LS+ RY V MP +S + Sbjct: 84 ITALVHEGQALVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRSSHVGISLKIEDEAERD 143 Query: 230 KNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + + ++ G ILRTA EI +D YL RLW+ + AP Sbjct: 144 RLKQVVSDCMDSEDIKNAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGSQIQTCGAPT 203 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PIF Sbjct: 204 VIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPIF 263 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ +V L S GY++++ EA+ +IDVN+G +E+T +TNLEA Sbjct: 264 DLYGVEDEIQRALDRKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 323 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A IARQLRLR++ G+I++DFIDME++ + R V + L++ L++D A+ + I+ GL++ Sbjct: 324 ATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGLVQ 383 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + + CT C+G G +++ ++ I R + Y A V + Sbjct: 384 MTRKRTRESLEQVLCEPCTACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQK 443 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E G +I + + + + + Sbjct: 444 VVDRLLDEESGNVAELETFIGRTIRFQVESMYSQEQYDV 482 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHASEI 73 >gi|320539554|ref|ZP_08039221.1| putative ribonuclease G [Serratia symbiotica str. Tucson] gi|320030407|gb|EFW12419.1| putative ribonuclease G [Serratia symbiotica str. Tucson] Length = 489 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 200/413 (48%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFHVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + + A G I+RTA + E+ +D ++L RLW Sbjct: 136 AAHVGLSQR--IDSEAERERLKNAVAAYCDELGGFIIRTAAEGIGEEELAQDADFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + + +Y E L +R +RD + I V Y +F +P Sbjct: 194 AKVLERKKRNRTKYKLYGELALAQRILRDFAGAALERIRVDSRLTYDLLVEFTDEYIPDI 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLELYTGNPPIFDLYDVENEIQRALERKVALKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+++L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMHNEEHRRRVLHSLEQALNKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C+ C G +++ +V ILR + Sbjct: 374 KTTVNGFSQLGLVEMTRKRTRESIEHVLCHSCSACNRRGTVKTVETVCYEILREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ + V L +++ + E E G + V I + + F + Sbjct: 434 AYDSDRFLVYASAAVGEALKSEESNALAEVEIFVGKQVKVQIEPLYSQEQFDV 486 >gi|300926011|ref|ZP_07141834.1| ribonuclease, Rne/Rng family [Escherichia coli MS 182-1] gi|300417955|gb|EFK01266.1| ribonuclease, Rne/Rng family [Escherichia coli MS 182-1] Length = 386 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 120/385 (31%), Positives = 189/385 (49%), Gaps = 2/385 (0%) Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQ+VK+ G KGA +TT ++L RY V MP S R + + LK++ Sbjct: 1 MVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERER-LKKVVAEYC 59 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G G I+RTA + E+ D YL R+W V E + +Y E L +R +R Sbjct: 60 DEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 118 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D ++ I V Y +F +P + Y PIF +E ++ + Sbjct: 119 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 178 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 +V L S GY+II+QTEA+ ++D+N+G ++DT TN+EA + IARQLRLR+L Sbjct: 179 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLG 238 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I++DFIDM + + R V L+++L KDR + V S GL+EM+R+R R S+ Sbjct: 239 GIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 298 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 C C G G +++ +V I+R + Y + +V+ V L ++ ++ Sbjct: 299 CNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLA 358 Query: 541 EYEARFGVSINVVIGIELADKLFYI 565 E E G + V I + F + Sbjct: 359 EVEIFVGKQVKVQIEPLYNQEQFDV 383 >gi|308188294|ref|YP_003932425.1| ribonuclease G [Pantoea vagans C9-1] gi|308058804|gb|ADO10976.1| ribonuclease G [Pantoea vagans C9-1] Length = 489 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFIVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK + G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEKERDR-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + L+Y E L +R +RD + I V +F +P Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDMLVEFTGEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 AGKLELYNGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+ +L KDR Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLESALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGINGFSALGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVEIFVGKQVKVHVEALYTQEQFDV 486 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G + FL +I P Sbjct: 60 IGLEKAAFLHASDIMP 75 >gi|327395445|dbj|BAK12867.1| ribonuclease G CafA [Pantoea ananatis AJ13355] Length = 489 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFVVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK + G G I+RTA + E+ +D +L RLW Sbjct: 136 AAHVGVSQRIASEKERER-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + L+Y E L +R +RD + I V DF +P Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDLLNDFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 ASKLELYNGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+ +L KDR Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLETALNKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGISGFSALGLVEMTRKRTRESIEHVLCEDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVELFVGKQVKVHVEALYTQEQFDV 486 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PAETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|62185385|ref|YP_220170.1| putative ribonuclease [Chlamydophila abortus S26/3] gi|62148452|emb|CAH64222.1| putative ribonuclease [Chlamydophila abortus S26/3] Length = 510 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 139/425 (32%), Positives = 234/425 (55%), Gaps = 3/425 (0%) Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 N K + I+E++K +LVQ+VKE G KGA +T+ +S Sbjct: 75 ENSKKFEQMFDMDFDVLHQENNEKPEAPIEELLKLDSPVLVQVVKEPIGTKGARLTSNIS 134 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 + GRY VL+PN+ +SRKI +P R LK++ R E+P MG+I RTA + + Sbjct: 135 IPGRYLVLLPNSPHRG-VSRKIEDPHMRDQLKQLIRSFEMPQDMGLICRTASVLASTDAL 193 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + L+ W + E ++ P L+YEE +++K+A+ K+ +++ Y++ Sbjct: 194 INEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYKRLLIDDYSTYQKC 253 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K +K P+ + + Y D P+F R IE ++D + ++ L S GY+ ++TEA+ + Sbjct: 254 KRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSGGYLFFDKTEAMHT 313 Query: 382 IDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 IDVNSGRST+ E +E+T +Q NLEAAEEIARQLRLR++ GL+++DFIDM+ +KN R V Sbjct: 314 IDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVL 373 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++LKE +K D AR + ++S FGL+EM+RQR R S++++ C YC G I++ SV Sbjct: 374 ERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPYCSGNAIIKTPESVV 433 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-KRATIVEYEARFGVSINVVIGIELA 559 + I R +++ + ++ + H ++ ++ + ++ + + L Sbjct: 434 IEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDELIRLAKHLKAKLQINTSDSLH 493 Query: 560 DKLFY 564 + Sbjct: 494 LNHYQ 498 >gi|149921915|ref|ZP_01910359.1| ribonuclease G [Plesiocystis pacifica SIR-1] gi|149817268|gb|EDM76745.1| ribonuclease G [Plesiocystis pacifica SIR-1] Length = 507 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 150/496 (30%), Positives = 237/496 (47%), Gaps = 6/496 (1%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPND-HSLEEVAPIANFSQETEEESIISAN 142 R AL++ + + E + G+V L + E + + + + Sbjct: 14 ETRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGEDKAAFLYAGD 73 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 E V VPK+ + I +++ Q +LVQ+VK+ KGA +TTY+SL Sbjct: 74 IASQKPGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTKGARITTYISL 133 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 GR V MP S R N ++ P G G I+RT + +++ Sbjct: 134 PGRNVVFMPTVSHVGISRRI--NSERQRRRLRRLVDEMRPKGSGFIVRTVARHASSAQVR 191 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 +YL+RLW N++ AP L+Y + +L+ R +RD D + +IV Y K Sbjct: 192 AGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVDDRAAYERLK 251 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 F +P YA + + IF GIE+++D + +V L S G ++ +Q EAL +I Sbjct: 252 RFADAFLPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLVFDQGEALTAI 311 Query: 383 DVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 DVN+G+ + +E T QTNLEAA+EIA QLRLR++ GLI++DFIDM+ + N R V Sbjct: 312 DVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDMDRESNRRKVY 371 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 ++L+++L++DRA+ + IS GL+EMSR+R R S+ C C G GY +S S++ Sbjct: 372 RRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGKGYHKSPSTIC 431 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 ILR + I V H DV + +R+ + R +I+V Sbjct: 432 YEILRQIRREGEHLAGEVISVTAHPDVAELMNGAERSALDHAVKRVHKAIDVQGRKGFHP 491 Query: 561 KLFYIEKGSPVQALVN 576 + F I +G + Sbjct: 492 EKFEI-RGKKARRANP 506 >gi|304396979|ref|ZP_07378859.1| ribonuclease, Rne/Rng family [Pantoea sp. aB] gi|304355775|gb|EFM20142.1| ribonuclease, Rne/Rng family [Pantoea sp. aB] Length = 489 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFIVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK + G G I+RTA + E+ +D +L RLW Sbjct: 136 ASHVGVSQRIESEKERDR-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + L+Y E L +R +RD + I V +F +P Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDMLVEFTGEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 AGKLELYNGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+ +L KDR Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLESALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGINGFSTLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVEIFVGKQVKVHVEALYTQEQFDV 486 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G + FL +I P Sbjct: 60 IGLEKAAFLHASDIMP 75 >gi|241759123|ref|ZP_04757232.1| ribonuclease G [Neisseria flavescens SK114] gi|241320619|gb|EER56889.1| ribonuclease G [Neisseria flavescens SK114] Length = 486 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 203/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 78 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 137 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + L A G I+RT + + +++ D YL ++W+++++ A Sbjct: 138 QRIEDDAERSNLRERLNNLLPENACHGYIIRTNAENASDDQLQSDINYLTKVWEHIQKQA 197 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD++ D +I+V + +R F + + + + Sbjct: 198 KIQPPETLLYQDLPLSLRVLRDMFSFDTHKILVDSTENHRRMTQFAEQYVQGALGRIELF 257 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F IE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 258 KGERPLFETHNIEQEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 317 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 318 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEVHREAVLQELAKALAFDRTRVTLNGF 377 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y Sbjct: 378 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAF 437 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 438 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 483 >gi|85713047|ref|ZP_01044084.1| RNase G [Idiomarina baltica OS145] gi|85693150|gb|EAQ31111.1| RNase G [Idiomarina baltica OS145] Length = 489 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 124/411 (30%), Positives = 205/411 (49%), Gaps = 2/411 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 E + ++ K Q I +++ Q ++VQ+VK+ G KGA +TT ++L RY V MP ++ Sbjct: 78 DGGETIEREEKSQLNITQLVHQGQPIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPQSN 137 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + D + I+RTAG + + D E+L RLW Sbjct: 138 HVGVSQR--IDDADERERLRSIAESLSHDEGKFIVRTAGEGVDEGSLTSDAEFLTRLWSQ 195 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 +++ + ++YE+ NL R +RD + I I V + K F K +P Sbjct: 196 IKKRKKSQRRVGILYEDLNLCCRVLRDFVGEAIERIRVDSRTTLDQLKLFTKDFIPELTH 255 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 ++ Y PIF IE ++ V L S G +II+QTEA+ +ID+N+G Sbjct: 256 VLEYYRGDRPIFDLFDIENEIQRALDRRVELKSGGSLIIDQTEAMTTIDINTGAFVGHRN 315 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +E+T TN+EA + IARQLRLR+L G+I++DFIDM+++++ R V L+++L KDRA+ Sbjct: 316 LEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMQDEEHKRRVLHSLEQALNKDRAKT 375 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 + + GL+EM+R+R R S+ C C+G G +++ +V I+R + Y Sbjct: 376 SINGFTTLGLVEMTRKRTRESLEHVLCGECPVCRGRGSMKTVETVCYEIMREIVRVHKAY 435 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ + V LLN++ + E E I + + F + Sbjct: 436 EADKFVVYASAPVSEALLNEESHALAELELFVSRQITIQTEPLYNQEQFDV 486 >gi|120600383|ref|YP_964957.1| ribonuclease G [Shewanella sp. W3-18-1] gi|146291685|ref|YP_001182109.1| ribonuclease G [Shewanella putrefaciens CN-32] gi|120560476|gb|ABM26403.1| RNAse G [Shewanella sp. W3-18-1] gi|145563375|gb|ABP74310.1| RNAse G [Shewanella putrefaciens CN-32] Length = 502 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 90 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + K V G I+RTA + E+ +D +L R+W Sbjct: 150 SSHVGVSQRIELEEERSRLKKITL--PYVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 207 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 208 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFDELQTFAQEFMPEI 266 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 267 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM +++ V L +L KDR Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLNEEHKTRVLNSLNSALAKDRV 386 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V+ I R + Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVVCSECPACHGTGSMKTVETVSYEIFREIIRLNR 446 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L ++ I E E I + + + + Sbjct: 447 AYDADEFLLYCSPAVYQSLSGEESHLIAELEVYISKRIRLQNEPMYSQHKYDV 499 >gi|300721801|ref|YP_003711079.1| RNase G (ribonuclease G) [Xenorhabdus nematophila ATCC 19061] gi|297628296|emb|CBJ88857.1| RNase G (ribonuclease G) [Xenorhabdus nematophila ATCC 19061] Length = 489 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 128/413 (30%), Positives = 206/413 (49%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I +++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECIAGEERKNFHVRDISKLVYQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S +S++I + +R+ LK I G G I+RTA EI +D +L RLW Sbjct: 136 ASHVG-VSQRIESEEERERLKNIVMDYCDEHG-GFIIRTAAEGVGTEEIAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E ++ + VY E L R +RD + I V + + + ++F+ +P Sbjct: 194 SKVIERKKRNITKNKVYGELALAPRILRDFVGASLGRIRVDSRQTFLQLQEFIDEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + ++ PIF G+E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 NAKLEHFQGEQPIFDLYGVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM +++ R V L+ +L KDR Sbjct: 314 RNLDETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMSNEEHRRRVLTSLELALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C+G G ++S +V ILR + Sbjct: 374 KTTINGFSALGLVEMTRKRTRESIEHILCDNCPTCQGRGTVKSVETVCYEILREIVRVNR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ V L + + E E G + V + + F + Sbjct: 434 AIDADRFLVYASPAVSEALKGDESHALAEVEIFVGKQVRVQTEQLYSQEQFDV 486 >gi|308051166|ref|YP_003914732.1| RNAse G [Ferrimonas balearica DSM 9799] gi|307633356|gb|ADN77658.1| RNAse G [Ferrimonas balearica DSM 9799] Length = 495 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 139/485 (28%), Positives = 231/485 (47%), Gaps = 9/485 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R AL++ + + E + G++ + A E + + A Sbjct: 16 PTESRVALVEHGMLQEVHLERRSRRGIVGNIYRGKVTRVLPGMQAAFVDIGQERAAFLHA 75 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 ++ V + + + R I +++ Q ++VQ+VK+ G KGA +TT ++ Sbjct: 76 SDIVPHTECVDEEDA------RAFRAEDIVSLVRQGQDIMVQVVKDPLGTKGARLTTDIT 129 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L RY V MP ++ R + +P +R+ LK I G G I+RTA ++IE+ Sbjct: 130 LPSRYLVFMPGSAHVGVSQR-VEDPQERERLKSIVGQFVDKDG-GFIIRTASEGVSEIEL 187 Query: 262 KRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 +D +L R+W V E + L+YEE +L R +RDL + + + V Y Sbjct: 188 AQDAAFLRRVWRKVIERRKRPGKSVSLLYEEPSLPLRIVRDLATRTLDRVQVDSHLTYEA 247 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 K+F+ MP + V Y PIF +E ++ Q +V L S GY+II+QTEA+ Sbjct: 248 LKEFVAEFMPETSAAVEHYRGKAPIFDLFDVENEIQRALQRKVELKSGGYLIIDQTEAMT 307 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +ID+N+G +E+T TNLEA + IARQLRLR+L G+I++DFIDM +++ V Sbjct: 308 TIDINTGAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMVSEEHKNRVL 367 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L+ SL +DR + + +S GL+EM+R+R R S+ C C+G G +++ +V Sbjct: 368 HNLELSLAQDRVKTSISGLSQLGLVEMTRKRTRESLEHVLCGECPVCRGTGQLKTVETVC 427 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 + R + Y A + + V L + ++ E E G + + A Sbjct: 428 YELYREIIRVDRAYDADEFVAYVSPAVQEILEGDEAHSLAELEVYLGKRVRIKPEPLYAQ 487 Query: 561 KLFYI 565 F + Sbjct: 488 DKFDV 492 >gi|330501862|ref|YP_004378731.1| RNAse G [Pseudomonas mendocina NK-01] gi|328916148|gb|AEB56979.1| RNAse G [Pseudomonas mendocina NK-01] Length = 485 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 136/401 (33%), Positives = 222/401 (55%), Gaps = 5/401 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G+KGA +TT LS+ RY V MP TS IS KI + + Sbjct: 83 PISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTSHVG-ISLKIEDEAE 141 Query: 229 RKNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 R+ LK++ G+ G ILRTA EI D YL RLWD + N+ A Sbjct: 142 RERLKQVVADCVAAEGIEEAGGFILRTAAEGAGADEILIDIRYLRRLWDQIGAQIQNAKA 201 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P ++YE+ +L R +RDL +I V + +++ F+ LMP A + Y P Sbjct: 202 PVVIYEDLSLALRTLRDLVSPRTEKIRVDSRETFQKITQFVAELMPEIADRLEHYPGERP 261 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 IF G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNL Sbjct: 262 IFDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRTLEETIFKTNL 321 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL Sbjct: 322 EAATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGL 381 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R R S+ + + CT C+G G +++ ++ I R + Y A + V + Sbjct: 382 VQMTRKRTRESLEQILCEPCTACQGRGKLKTPETICYEIFREILREARAYQAESYRVLAN 441 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G +I + + + + + Sbjct: 442 QKVVDRLLDEESGNVADLEAFIGRTIKFQVETMYSQEQYDV 482 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E K+ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQKRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHASEI 73 >gi|255590743|ref|XP_002535353.1| Ribonuclease G, putative [Ricinus communis] gi|223523379|gb|EEF27033.1| Ribonuclease G, putative [Ricinus communis] Length = 436 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 117/401 (29%), Positives = 208/401 (51%), Gaps = 1/401 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ IQEV+ Q ++VQ++KE G KGA +TT +S+AGR+ V +P R Sbjct: 33 KERPIQEVLHEGQSIIVQVIKEAIGTKGARLTTEISIAGRFLVYLPYQKHIGVSQRIDIE 92 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + L G I+RT + T E+ D EYL ++W ++ + Sbjct: 93 EEREFLRNRLLGLLPEEREGGYIIRTMSENATDEELLADIEYLRKVWQKIQAESKKVGER 152 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L++ + +L +R +RD+ C + + I V + + K+F +L + + + Y+ + Sbjct: 153 SLIFYDLSLPRRILRDVVCTETTSIRVDSREMFERLKEFAELYVSHAVKPLTHYKGERSL 212 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F IE +++ +V L S GY+I +QTEAL ++DVN+G + DT +TNLE Sbjct: 213 FEFYDIESEIEKALSRKVELKSGGYLIFDQTEALTTVDVNTGSFVSGKNLSDTIFKTNLE 272 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+ IARQLRLR+L G+I++DFIDM+E +V ++L++++ DRAR+ V S GL+ Sbjct: 273 AAQTIARQLRLRNLGGIIIIDFIDMDEDAQREAVLEELRKAVTLDRARINVNGFSALGLV 332 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTH 524 E++R+R R S+ + C C+G G +++ ++ I+R V Q+ A + Sbjct: 333 ELTRKRTRESLAHLLCESCQVCQGRGELKTAQTICYEIMREVLRESKQFKSAKEFKILAS 392 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V+ L +++ ++ +++ + + F I Sbjct: 393 PEVINMLGDEESQSLASLSDFIKKPLSLHPDTQYGREEFDI 433 Score = 44.2 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 54 LQAAFVDYGGNRHGFLPFLEI 74 +Q+AFV+ G R FL +I Sbjct: 1 MQSAFVEIGLQRAAFLHAADI 21 >gi|319637785|ref|ZP_07992551.1| cytoplasmic axial filament protein [Neisseria mucosa C102] gi|317400940|gb|EFV81595.1| cytoplasmic axial filament protein [Neisseria mucosa C102] Length = 497 Score = 246 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 203/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + I+ ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P Sbjct: 89 QRRNPDETQRIEHMLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGIS 148 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + L A G I+RT + + +++ D YL ++W+++++ A Sbjct: 149 QRIEDDAERSSLRERLNNLLPENACHGYIIRTNAENASDAQLQSDINYLTKVWEHIQKQA 208 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y++ L R +RD++ D +I+V + +R F + + + + Sbjct: 209 KIQPPETLLYQDLPLSLRVLRDMFSLDTHKILVDSTENHRRMTQFAEQYVQGALGRIELF 268 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F IE ++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 269 KGERPLFETHNIEQEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETI 328 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 329 FRTNLEACHTIARELRLRNLGGIIIIDFIDMAQEVHREAVLQELAKALSFDRTRVTLNGF 388 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y Sbjct: 389 TSLGLVELTRKRSRENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAF 448 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +V+ L+++ ++ G I++ + + + I Sbjct: 449 RILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 494 >gi|310766189|gb|ADP11139.1| ribonuclease G [Erwinia sp. Ejp617] Length = 489 Score = 246 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+ G G I+RTA + E+ D +L RLW Sbjct: 136 ASHVGVSQRIDSEAERNR-LKEVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + + +F +P Sbjct: 194 TKVIERKKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEHLLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486 >gi|300718644|ref|YP_003743447.1| Sribonuclease G [Erwinia billingiae Eb661] gi|299064480|emb|CAX61600.1| SRibonuclease G [Erwinia billingiae Eb661] Length = 489 Score = 246 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 193/413 (46%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKNFSVRDISELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + K G I+RTA ++E+ D +L RLW Sbjct: 136 ASHVGVSQRIESEAERDRLKK--VVSAYCDELGGYIIRTAAEGVGEVELASDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + Y +F +P Sbjct: 194 TKVIERRKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLTYEHLVEFTGEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 TSKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA IARQLRLR+L G+I++DFIDM + + R V L++ L KDR Sbjct: 314 RNLDETIFNTNIEATHAIARQLRLRNLGGIIIIDFIDMTNEDHRRRVLHSLEQGLSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KSGIHGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L +++ + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPAVGEALKSEESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486 >gi|259906974|ref|YP_002647330.1| ribonuclease G [Erwinia pyrifoliae Ep1/96] gi|224962596|emb|CAX54051.1| Ribonuclease G [Erwinia pyrifoliae Ep1/96] gi|283476768|emb|CAY72606.1| ribonuclease G [Erwinia pyrifoliae DSM 12163] Length = 489 Score = 246 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+ G G I+RTA + E+ D +L RLW Sbjct: 136 ASHVGVSQRIDSEAERNR-LKEVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + + +F +P Sbjct: 194 TKVIERKKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEHLLEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + R V L+++L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNDEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486 >gi|226951644|ref|ZP_03822108.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter sp. ATCC 27244] gi|294651321|ref|ZP_06728642.1| ribonuclease G [Acinetobacter haemolyticus ATCC 19194] gi|226837625|gb|EEH70008.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter sp. ATCC 27244] gi|292822793|gb|EFF81675.1| ribonuclease G [Acinetobacter haemolyticus ATCC 19194] Length = 484 Score = 246 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 122/412 (29%), Positives = 212/412 (51%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ Q+L VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 71 NDMVWPRSQPTPNVFELLHPGQMLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 130 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + L+ I ++ VI+RTA + I +D YL +LW+ Sbjct: 131 GVSQRIEAEEERDR-LRGIIEHIQAEHNLPGSVIVRTAAEGVDEAAIAQDMNYLSKLWEF 189 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ P L++EE L +R +RDL + ++I V + + + DF+K +P+ Sbjct: 190 IQRKQKEVSTPELIFEELPLPQRIVRDLASDETAKIYVDSREIHGKLNDFVKEFVPTIQN 249 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++++QTEA+ +IDVN+G Sbjct: 250 RLLHYPGEKPLFDLYNVEEDIQKALQTRVALKSGGYLMLDQTEAMTTIDVNTGSYVGGRS 309 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + I+RQLRLR+L G+I++DFIDM+E + V ++ ++ L++D A+ Sbjct: 310 LEDTVFKTNMEATQVISRQLRLRNLGGIIIIDFIDMQEAGHREEVMRQFEKMLERDHAKT 369 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 ++ +S GL+EM+R+R R S+ + C C+G GY+++ +V I R + Y + Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCYEIFREIMRYARAF 429 Query: 515 TAH-NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 430 DSKGGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 481 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA ++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 1 MAEELLINVT-PMECRVALIENGTVNELFVERTAKRGLVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 60 IGLSRTAFLHINDM 73 >gi|303231360|ref|ZP_07318094.1| putative Ribonuclease G [Veillonella atypica ACS-049-V-Sch6] gi|302513956|gb|EFL55964.1| putative Ribonuclease G [Veillonella atypica ACS-049-V-Sch6] Length = 475 Score = 246 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 234/457 (51%), Gaps = 7/457 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + E ++ + + ++ + N + + D+ G + + ++ I Sbjct: 19 DEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + Q +LVQ+VKEE KGA VT +SLAGR+ VL+P S+G IS+KIT+ + Sbjct: 79 LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-ESIR 136 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + + V G G I+RTA A + EI RD +YL R W +V + + + +Y Sbjct: 137 SQLQELAAPYVKEGCGFIIRTAAAKASADEIARDMDYLWRTWQHVLKRFKVAKSGTDLYS 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + + R +RD +++ EIIV + G D + S V ++ D PIF + Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409 IE QL+ L ++ LPS G + I+ TEAL DVNS T + + A N EAA+E Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLRD+ G+IVVDFIDM++K++ + + K L K D+ + V IS+ GL+EM+R Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLSAQAKLDKMKTVVCGISSLGLVEMTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528 +R R + C C G GY+ S +V + I+R + E N+ + H +V Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKSNLEIEVHPEVA 436 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YL ++ + + A G SI++V+ +++ + + + Sbjct: 437 QYLT---KSVLDDLGASIGRSISIVVNPQISREGYSL 470 Score = 80.8 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 4 KMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+L++ EE R+ V+ + ++ + E + + ++Y V V +QAAFVD G Sbjct: 3 KILVNVMR-EEIRMAVIDEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61 Query: 63 GNRHGFL 69 G+++ +L Sbjct: 62 GSQNAYL 68 >gi|291619115|ref|YP_003521857.1| CafA [Pantoea ananatis LMG 20103] gi|291154145|gb|ADD78729.1| CafA [Pantoea ananatis LMG 20103] Length = 489 Score = 246 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 197/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFVVRDIAELVRQGQDLVVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + R + + LK + G G I+RTA + E+ +D +L RLW Sbjct: 136 AAHVGVSQRIASEKERER-LKAVVADYCDDLG-GFIIRTAAEGIGEEELAQDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + L+Y E L +R +RD + I V +F +P Sbjct: 194 TKVSERKKRNQTRCLLYGELALAQRILRDFAGAALDRIRVDSRLTCDLLNEFTSEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y PIF +E ++ + +V L S GY+II+QTEA+ +ID+N+G Sbjct: 254 ASKLELYNGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +++T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+ +L KDR Sbjct: 314 RNLDETIFNTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLETALNKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGISGFSALGLVEMTRKRTRESIEHVLCEDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPTVGEALKTDESHALAEVELFVGKQVKVHVEALYTQEQFDV 486 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PAETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|127511341|ref|YP_001092538.1| ribonuclease G [Shewanella loihica PV-4] gi|126636636|gb|ABO22279.1| RNAse G [Shewanella loihica PV-4] Length = 500 Score = 246 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 122/396 (30%), Positives = 194/396 (48%), Gaps = 3/396 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP +S R + Sbjct: 105 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQR--IESEEV 162 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + V G I+RTA + + E+ +D +L R+W V E L+Y Sbjct: 163 RARLKGLTEPFVDEDGGFIIRTAAENAGEQELIQDAAFLRRVWAKVCERR-KRPGVSLLY 221 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ L R +RD ++ +I V + Y E F + MP A + Y PIF Sbjct: 222 QDLALPVRIVRDFVGTELDQIQVDSGQTYEELLQFTQEFMPEIADKIEHYSGRVPIFDLY 281 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E ++ +V L S GY+II+QTEA+ ++D+N+G +E+T TNLEA Sbjct: 282 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATHA 341 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM + + + V L+ +L DR + V S GL+EM+R Sbjct: 342 IARQLRLRNLGGIIIIDFIDMLNEDHKKRVLSTLEAALANDRVKTNVSGFSGLGLVEMTR 401 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ C C G G +++ +V+ I R + Y A +V+ V Sbjct: 402 KRTRESLEHVLCGECPACFGTGSLKTVETVSYEIFREIIRLNRGYDADEFLVYCAPTVYN 461 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L ++ + E A G + + A F + Sbjct: 462 SLTGEESHLVAELGAYIGKHVRLQNEPMYAQNKFDV 497 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++LI+ + E RV ++ ++E+ E K+ + GNIY KV+RV P +QAAFVD G Sbjct: 16 ELLINVT-PTEARVALVEYGILQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGL 74 Query: 64 NRHGFLPFLEIHP 76 ++ FL +I P Sbjct: 75 DKAAFLHASDIVP 87 >gi|146305895|ref|YP_001186360.1| RNAse G [Pseudomonas mendocina ymp] gi|145574096|gb|ABP83628.1| RNAse G [Pseudomonas mendocina ymp] Length = 485 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 127/400 (31%), Positives = 212/400 (53%), Gaps = 3/400 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I ++ Q L+VQ+ K+ G+KGA +TT LS+ RY V MP TS + Sbjct: 83 PISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTSHVGISLKIEEEAER 142 Query: 229 RKNLK---EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + + + G ILRTA EI D YL RLWD + N+ AP Sbjct: 143 DRLKQVVADCVAAEGIEEAGGFILRTAAEGAGADEILIDIRYLRRLWDQIAAQIQNAKAP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ +L R +RDL +I V + +++ F+ LMP A + Y PI Sbjct: 203 SVIYEDLSLALRTLRDLVSPRTEKIRVDSRETFQKITQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRTLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C+ C+G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQILCEPCSACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + + EA G +I + + + + + Sbjct: 443 KVVDRLLDEESGNVADLEAFIGRTIKFQVETMYSQEQYDV 482 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E K+ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQKRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ EI Sbjct: 60 IGLERAAFIHASEI 73 >gi|292486775|ref|YP_003529645.1| ribonuclease G [Erwinia amylovora CFBP1430] gi|292900825|ref|YP_003540194.1| ribonuclease G [Erwinia amylovora ATCC 49946] gi|291200673|emb|CBJ47805.1| ribonuclease G [Erwinia amylovora ATCC 49946] gi|291552192|emb|CBA19229.1| ribonuclease G [Erwinia amylovora CFBP1430] gi|312170843|emb|CBX79103.1| ribonuclease G [Erwinia amylovora ATCC BAA-2158] Length = 489 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LKE+ G G I+RTA + E+ D +L RLW Sbjct: 136 ASHVGVSQRIDSEAERNR-LKEVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + + + +F + +P Sbjct: 194 TKVIERKKRNQTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEQLIEFTREYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L ++L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLDQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCPVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYVSPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486 >gi|71736189|ref|YP_276290.1| ribonuclease G [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556742|gb|AAZ35953.1| ribonuclease G [Pseudomonas syringae pv. phaseolicola 1448A] Length = 485 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYRAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|197121148|ref|YP_002133099.1| ribonuclease, Rne/Rng family [Anaeromyxobacter sp. K] gi|196170997|gb|ACG71970.1| ribonuclease, Rne/Rng family [Anaeromyxobacter sp. K] Length = 860 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 141/541 (26%), Positives = 235/541 (43%), Gaps = 16/541 (2%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 K+ K IQ+++K Q ++VQ+ K+ G KGA +T+++SL GR+ V MP Sbjct: 326 EEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGIS 385 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + R+ P G G I+RT + +++ D +L+++W+ + Sbjct: 386 RRIEKDGERRR--LREIVDRMRPEGTGFIVRTVAENVEAAKLEADIRFLIQVWNEIIRTK 443 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 AP L++ + +LI RA RDL+ ++ ++++ Y F+ P + Y Sbjct: 444 DKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERILRFVHDQAPHLESQIESY 503 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + PIF GIE +L Q +V L S GY+I++Q EAL +IDVNSGR + +E+T Sbjct: 504 QGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETI 563 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 + N+EAA+EI QLRLR++ G+I++DFIDM++ +N V K L+++L +D+A+ V I Sbjct: 564 TKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKI 623 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R+R SV + C YC G G+++S+ ++A I R + + + Sbjct: 624 SELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAYEIFREIRREAPHFPEPVL 683 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALV 575 +V++H +V L +R + RF +I V + F I E+ Sbjct: 684 VVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQEQFDIYGRQERAEQGGGGG 743 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 G R R R Sbjct: 744 GGSGSGGGSGGGGGGSGGGGGGGGGGGRDRDRGRGRDRRGGRGGERGGERND-RNERGDR 802 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 R + + G +D + + G P Sbjct: 803 NERGDRGERGERGERND---------RGGERSDRGERGQRGDRGGERPEGGEPRAAPEAP 853 Query: 696 P 696 P Sbjct: 854 P 854 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I+A+ ETRV ++ + + E E + +K I GNIY +V RV P +QAAFVD G Sbjct: 7 LVINAAGA-ETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLE 65 Query: 65 RHGFLPFLEIHPD 77 + FL +++ D Sbjct: 66 KAAFLYVGDVYGD 78 >gi|284044117|ref|YP_003394457.1| ribonuclease, Rne/Rng family [Conexibacter woesei DSM 14684] gi|283948338|gb|ADB51082.1| ribonuclease, Rne/Rng family [Conexibacter woesei DSM 14684] Length = 636 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 135/429 (31%), Positives = 216/429 (50%), Gaps = 10/429 (2%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 +P + K I ++++ Q ++VQ+VK+ KGA ++ L++ GRY V P Sbjct: 103 ETPRRGRGQGKDGLKIHDLLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTP-QG 161 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +G +SR++ + + KE AR G G I+RTA + + +R+ +YL +L D Sbjct: 162 EGVGVSRRLPDKERDRLRKEAAR--LDLQGGGAIIRTAAFGARREDFEREMQYLFKLNDV 219 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 + + + AP LV++E +L R +RD++ +V +K Y+ F P Sbjct: 220 LAKRVEETQAPDLVFQEADLSIRVVRDVFSDHFERAVVDDQKQYQRLVSFFTRTAPELVD 279 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST---R 391 V +E+ P+F R G+E ++ V LPS GY+II+ EAL IDVN+G R Sbjct: 280 RVELWEEEAPLFERFGVEREIQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGR 339 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +EDT +TNLEAAEE RQLRLRD+ G+IV+DFIDM +N +V K L++SL +DR Sbjct: 340 GARLEDTITRTNLEAAEEAVRQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDR 399 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 + V IS GL+EM+RQ + V E T+ C C G G IRS+ ++A+ R + + Sbjct: 400 TKTFVVEISPLGLVEMTRQNVTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIA 459 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE----K 567 ++ A +++ + V + + E G + L F I + Sbjct: 460 KEHEAEALLLQINPRVGAVFTGNSARILRQLEEETGKWFHFEGSEGLPLDHFAITFEGSR 519 Query: 568 GSPVQALVN 576 + + Sbjct: 520 DEVAERALP 528 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 25/98 (25%) Query: 1 MANKMLIDASHVEETRVVVLR------------------------DNRVEELDFESEHKK 36 M ++L+ ETRV +L RV EL E + Sbjct: 1 MKKQVLVSVDRG-ETRVALLEATGDVAPAPRTSGRRRRKPANPSAGYRVAELYLERRGNR 59 Query: 37 QIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 I GNIY KV V L+AAFVD G ++GFL EI Sbjct: 60 SIVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEI 97 >gi|330888633|gb|EGH21294.1| ribonuclease G [Pseudomonas syringae pv. mori str. 301020] Length = 485 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVAKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILISIT-PMESRVAVVENGVLQEVHVEHTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|303229385|ref|ZP_07316175.1| putative Ribonuclease G [Veillonella atypica ACS-134-V-Col7a] gi|302515921|gb|EFL57873.1| putative Ribonuclease G [Veillonella atypica ACS-134-V-Col7a] Length = 475 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 233/457 (50%), Gaps = 7/457 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + E ++ + + ++ + N + + D+ G + + ++ I Sbjct: 19 DEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + Q +LVQ+VKEE KGA VT +SLAGR+ VL+P S+G IS+KIT+ + Sbjct: 79 LPRLSVGQQILVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-ESIR 136 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + V G G I+RTA A + EI RD +YL R W +V + + + +Y Sbjct: 137 AQLQELAAPYVKEGCGFIIRTAAAKASADEIGRDMDYLWRTWQHVLKRFKVAKSGTDLYS 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + + R +RD +++ EIIV + G D + S V ++ D PIF + Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLLDLLGHGPTSQQIKVTRHRDSTPIFKANH 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409 IE QL+ L ++ LPS G + I+ TEAL DVNS T + + A N EAA+E Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLRD+ G+IVVDFIDM++K++ + + K L K D+ + V IS+ GL+EM+R Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKEHQQELLKLLSAQAKLDKMKTVVCGISSLGLVEMTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528 +R R + C C G GY+ S +V + I+R + E N+ + H +V Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKSNLEIEAHPEVA 436 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YL ++ + + A G SI++V+ +++ + + + Sbjct: 437 QYLT---KSVLDDLGASIGRSISIVVNPQISREGYSL 470 Score = 80.8 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 4 KMLIDASHVEETRVVVLRDN-RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+L++ EE R+ V+ + ++ + E + + ++Y V V +QAAFVD G Sbjct: 3 KILVNVMR-EEIRMAVIDEKEQLIDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61 Query: 63 GNRHGFL 69 G+++ +L Sbjct: 62 GSQNAYL 68 >gi|298488476|ref|ZP_07006507.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157101|gb|EFH98190.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 485 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQLGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|330875172|gb|EGH09321.1| ribonuclease G [Pseudomonas syringae pv. glycinea str. race 4] Length = 485 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 132/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQ+RLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQMRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|124007392|ref|ZP_01692099.1| ribonuclease, Rne/Rng family [Microscilla marina ATCC 23134] gi|123987225|gb|EAY26965.1| ribonuclease, Rne/Rng family [Microscilla marina ATCC 23134] Length = 519 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 134/570 (23%), Positives = 249/570 (43%), Gaps = 70/570 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+N+++I+++ E R+V+L++ RV E E + G+IYL V +V L AAF+D Sbjct: 1 MSNELIINSTQKGE-RIVLLKNKRVVEYHIEEKDNNFTVGDIYLGTVKKVVQGLNAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL +L++ P + + + L K +V + + Sbjct: 60 VGYDKDAFLHYLDLGPKFSSLNTFTKDVLAK-------------KNVPYKLQDFKLKPEI 106 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ I++ + + + + + +Y + + + Sbjct: 107 NKLGKISSIFSRNNQVLVQVIKEPISTKGPRLSCE------LSLAGRYLVLVPFSSSVNI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I +E + + S + P + I R + L + L Sbjct: 161 SKKITNKEERQRLQRL---------MSSIKP--ANFGIIVRTNAEGKEVAELDRDLKSL- 208 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + +W N + ++ + E + +R Sbjct: 209 ----------------------------VEIWVNGMKSLRDAKPRDKIIGEMDRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + I+V + + + K +++ + P +IV+ + IF IE QL L Sbjct: 241 DMLNESFDSIVVDEKTIHGDIKSYIRKIAPDKEKIVKLHAGKTKIFEHYQIEKQLKLLFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V+LP GY+II TEAL IDVNSG +S E E+TAL N+EAA+EIARQLRLRD+ Sbjct: 301 KSVSLPKGGYLIIEHTEALHVIDVNSGNKSNVEQDQENTALNVNMEAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDM++ +N R V + +KE LK+DR++ V ++ FGL++++RQR+R + + Sbjct: 361 GGIIIIDFIDMKKVENKRKVYEFVKEQLKQDRSKSTVLPLTKFGLMQITRQRVRPEMNIT 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY-----LLNQ 534 T + C C G G + + V+ I ++E L + + + H + Y L+++ Sbjct: 421 TRETCASCGGTGKVEATILVSDLIESNLEYVLNKQNEKKVTIALHPYLYAYFTKGGLMSK 480 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFY 564 + + ++G + ++ L F Sbjct: 481 RVRWLF----KYGRWVKLLKDSALPLASFK 506 >gi|21221057|ref|NP_626836.1| hypothetical protein SCO2599 [Streptomyces coelicolor A3(2)] gi|6983741|emb|CAB75380.1| conserved hypothetical protein SCC88.10c [Streptomyces coelicolor A3(2)] Length = 1340 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 146/568 (25%), Positives = 253/568 (44%), Gaps = 9/568 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 633 GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 692 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L W+ Sbjct: 693 SMTG-ISRKLPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 749 Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++++ A + S AP L+Y E ++ R +RD++ +D S+++VSG+ ++ ++ + P Sbjct: 750 DIQKKAKSGGSSNAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAP 809 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 A + ++ +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T Sbjct: 810 DLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFT 869 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + +E+T + NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L + Sbjct: 870 GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGR 929 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-QSSVALSILRSVE 508 DR + QV +++ GL++M+R+R+ +LES ++ C +C G G I + Sbjct: 930 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSSAGGGGGKR 989 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 + A H H V + E+ V+ V + L F ++ Sbjct: 990 RKRARAGAEQPHEHEHEAVAGIETGPTPEQEADTESETEVAAEVAEPVALPAPDFSADEE 1049 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQDNIVSEESTGV 627 A + + + A K+ES++ + Sbjct: 1050 LYSSAAEAEAAATRGRGRRRASRRASAPAGAPRAAKGEAKAESVKAEAAPAGAPTAQDVT 1109 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +R+ R RR PA + + + + P+ Sbjct: 1110 VREEVERPVRREPAAEVLAEPAAVEDAVSGAPAPAAAAETAAPAPEEAAPKGRTRRRATR 1169 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + P + + V + Sbjct: 1170 KVSAPAGSPEGAEAAVLTVPETSTTVSE 1197 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ H E T++ VL D + E E GN+YL KV V PS++AAF+D G Sbjct: 564 ERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 623 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 624 KGRNAVLYAGEV 635 >gi|320330024|gb|EFW86011.1| ribonuclease G [Pseudomonas syringae pv. glycinea str. race 4] Length = 485 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 132/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQ+RLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQMRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|257482239|ref|ZP_05636280.1| ribonuclease G [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627554|ref|ZP_06460508.1| ribonuclease G [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646982|ref|ZP_06478325.1| ribonuclease G [Pseudomonas syringae pv. aesculi str. 2250] gi|320322507|gb|EFW78600.1| ribonuclease G [Pseudomonas syringae pv. glycinea str. B076] gi|330868267|gb|EGH02976.1| ribonuclease G [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987077|gb|EGH85180.1| ribonuclease G [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011520|gb|EGH91576.1| ribonuclease G [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 485 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|34540961|ref|NP_905440.1| ribonuclease [Porphyromonas gingivalis W83] gi|34397276|gb|AAQ66339.1| ribonuclease, Rne/Rng family [Porphyromonas gingivalis W83] Length = 504 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 124/430 (28%), Positives = 216/430 (50%), Gaps = 4/430 (0%) Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 ++++ + + S + ++ I +V+K Q +LVQI KE KG + Sbjct: 63 DAQQKMMEMMTKSKSIPSLSKVPLGSDLPKEGKIADVLKAGQQILVQIAKEPISTKGPRL 122 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 T LS AGR VL+P K + + + + I P VI+RT+ + Sbjct: 123 TAELSFAGRSLVLVPFADKVSVSQKIRSAEERARLRQLIIS--IKPKNFSVIIRTSAEGK 180 Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316 E+ ++ + L+R WD+ + L + AP +VYEE + +RD + IIV+ + Sbjct: 181 RASELDKELQSLLRRWDDNIKKLLRAKAPSIVYEEASRTLGLLRDNFNPSYQSIIVNDKA 240 Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 D+++L+ P IV+ Y+ PIF I Q+ +L VT S Y+II QT Sbjct: 241 FRDSLSDYVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQT 300 Query: 377 EALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435 EA+ +DVNSG +R ++ TA+ N+ AAEE+ARQLRLRD+ G+IVVDFIDM E ++ Sbjct: 301 EAMHVVDVNSGNRSRGSTEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQH 360 Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 + + + + + + DRAR + +S FG+++++RQR+R +++ T + C C G G + S Sbjct: 361 RQQLYEHMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVES 420 Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVI 554 + V + + ++ ++H H V YL + + +++ ++ I ++ Sbjct: 421 SILFTDQLEEKVAKMVTEHQVKQFVLHVHPYVAAYLKKGFLSSILKKWKLKYAKGIKLIP 480 Query: 555 GIELADKLFY 564 L + Sbjct: 481 DESLGFLDYT 490 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 + VL D ++ EL E + G+IYL KV +V P L AAFVD G + FL +L++ Sbjct: 1 MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFLHYLDLG 59 >gi|330895283|gb|EGH27621.1| ribonuclease G [Pseudomonas syringae pv. japonica str. M301072PT] gi|330958028|gb|EGH58288.1| ribonuclease G [Pseudomonas syringae pv. maculicola str. ES4326] Length = 485 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++I+ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|305666097|ref|YP_003862384.1| Ribonuclease G [Maribacter sp. HTCC2170] gi|88707531|gb|EAQ99774.1| Ribonuclease G [Maribacter sp. HTCC2170] Length = 515 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 126/564 (22%), Positives = 222/564 (39%), Gaps = 62/564 (10%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+ LI S + +L++ ++ EL E ++ G+I+LAKV + L AAFV+ G Sbjct: 2 NRELIVRSSSDAVDFALLKEGKLTELHKEEDNNDFSVGDIFLAKVRKPVTGLNAAFVNVG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 + FL + ++ P + V+ G + + + Sbjct: 62 YEKDAFLHYHDLGPQ-------------------LSTMLKFIKQVSTGKLRDYSLKNFPL 102 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 I + + + G +Y + R + Sbjct: 103 EKDIDKHGSINDVIKSNQSLLVQIVKEPISTKGPRISSELSLAGRYLVMVPFSERVSVSQ 162 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 +I +E ++ + + G ++ Sbjct: 163 KIGSKEEKDRLKRLVKSIKPKGFGVII--------------------------------- 189 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 RT + E+ +D E L+ W + + + P V E N +RD+ Sbjct: 190 -------RTVAEGKKVAELDKDLENLLDKWSAMCKKLYKAPTPSKVLVELNRASSILRDI 242 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 + + I V E Y + KD+++ + P IV+ Y PIF + GIE Q+ + Sbjct: 243 FNDSFTGIQVDDETLYNQVKDYVQEIAPGKESIVKLYSSSVPIFEKFGIERQIKTSFGRT 302 Query: 363 VTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 ++ Y+II TEAL IDVNSG RS + EDTAL+ N+ +A EIARQLRLRD+ G Sbjct: 303 ASMSKGAYLIIEHTEALHVIDVNSGNRSNKAKNQEDTALEVNMLSASEIARQLRLRDMGG 362 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +IV+DFIDM + + R + L++ +K DRA+ ++ S FGL++++RQR+R + TT Sbjct: 363 IIVIDFIDMVKAPHRRKLFDHLRDEMKDDRAKHKILPPSKFGLVQITRQRVRPEMNIKTT 422 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRATIV 540 + G + + + I +E+ L I ++ H + Y+ + Sbjct: 423 EQDPNRSGM-EVEAPIVLIDKINVDLEKLLKGPKKDSKITLNLHPFIAAYITKGFPSIRS 481 Query: 541 EYEARFGVSINVVIGIELADKLFY 564 ++ I + + Sbjct: 482 KWFMEHKKWIKIQPRDAYTYLEYR 505 >gi|113971798|ref|YP_735591.1| ribonuclease G [Shewanella sp. MR-4] gi|117922078|ref|YP_871270.1| ribonuclease G [Shewanella sp. ANA-3] gi|113886482|gb|ABI40534.1| RNAse G [Shewanella sp. MR-4] gi|117614410|gb|ABK49864.1| RNAse G [Shewanella sp. ANA-3] Length = 502 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 195/413 (47%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 90 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + K V G I+RTA + E+ +D +L R+W Sbjct: 150 SSHVGVSQRIEQEEERSRLKKITL--PFVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVW 207 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 208 SKVSERR-QRRGVALLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQAFAQEFMPEI 266 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 267 ADKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM ++ V L +L KDR Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMLSDEHKTRVLNSLNSALAKDRV 386 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C+ G +++ +V+ I R + Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVLCGECPACQSTGSMKTVETVSYEIFREIIRLNR 446 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + + E E G I + + + + Sbjct: 447 AYDADEFLLYCSPAVYNSLSGDESHLVAELEVYIGKRIRLQNEPMYSQHKYDV 499 >gi|82701498|ref|YP_411064.1| ribonuclease [Nitrosospira multiformis ATCC 25196] gi|82409563|gb|ABB73672.1| RNAse G [Nitrosospira multiformis ATCC 25196] Length = 483 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 120/410 (29%), Positives = 215/410 (52%), Gaps = 1/410 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + I++++ + +LVQ++K+ G KGA ++T +S+AGR V +P S Sbjct: 72 DIWRLRQSEDADKPIEQLLYEGKNILVQVIKDSIGAKGARLSTQVSIAGRLLVYLPQVSH 131 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R + +++ L G I+RT + ++ +++ D EYL +LW ++ Sbjct: 132 IGISQRIEDETERKSLREKLKHLLPAAEEGGFIIRTVAEAASEQDLQTDIEYLHKLWRDI 191 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 +E +L S P L+Y++ NL R +RD D + I+V + +++ F ++ M + Sbjct: 192 KEKSLIS-QPALLYQDLNLSFRVLRDFISDDTTRILVDSRETFQKMATFARVYMANVVER 250 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F G+E +++ V L S GY+II+QTEAL +IDVN+G Sbjct: 251 LDHYAGERPLFELYGVEDEIEKALARRVDLKSGGYLIIDQTEALTTIDVNTGGFIGVRSF 310 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEAA+ IARQLRLR+L G+I++DFIDME ++ +V + K+SL KDR + Sbjct: 311 DDTIFKTNLEAAQVIARQLRLRNLGGIIIIDFIDMESAEHQNAVLSEFKKSLMKDRTHMT 370 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 V + GL+EM+R+R R S+ + C C+G +R+ ++ ILR + Q+ Sbjct: 371 VNGFTALGLVEMTRKRTRESLAHILCETCPTCQGRSKVRTAQTMCYEILRELLRESRQFD 430 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A + V+ L+++ ++ + I++ + + + + Sbjct: 431 AREFRIVASQQVIDLFLDEESQSLAQLADFIAKPISLQVEGTYTQEQYDL 480 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +ETRV V+ V+EL E I GNIY +V RV P +Q+AFVD Sbjct: 1 MSCEILINVT-PQETRVAVVEHGAVQELHIERTSNCGIVGNIYNGRVIRVLPGMQSAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL +I Sbjct: 60 IGLERAAFLHLADI 73 >gi|317485998|ref|ZP_07944853.1| rne/Rng family ribonuclease [Bilophila wadsworthia 3_1_6] gi|316922771|gb|EFV44002.1| rne/Rng family ribonuclease [Bilophila wadsworthia 3_1_6] Length = 913 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 149/401 (37%), Positives = 236/401 (58%), Gaps = 5/401 (1%) Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 P K ++ IQ+V+K Q +LVQ+VKE G+KGA +TT+LSLAGR+ VL P + Sbjct: 490 HEPTKGRKYPPIQKVLKPGQEVLVQVVKEPNGSKGAFLTTWLSLAGRFLVLTPGQEQIG- 548 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 ISRK+ + +R L+E+ RGLE G+G I+RT A +K +++D +L R+W ++R+ Sbjct: 549 ISRKVEDGEERNRLRELIRGLEPGEGLGAIVRTVSAGTSKTTLQKDLSFLKRVWKDIRKR 608 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR- 337 A P L+Y+E L R++RD D+SE+ V + ++ LL P +V Sbjct: 609 ATTEKVPSLIYQEPGLASRSVRDYLSDDVSEVWVDNAETAEAIREMASLLFPRKGDLVHL 668 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 + ++ G+ Q++ +H EV +PS G ++ +QTEAL++ID+NSG+ + E Sbjct: 669 YEKHDKTLWEHFGLLNQIEQVHSREVLMPSGGRLVFDQTEALMAIDINSGKIGGKTNFEA 728 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 A +TN+EAA IARQLRLRD+ G IV+DFI+M + ++ R VEK+L+ ++K DRAR +G Sbjct: 729 MAFRTNMEAATAIARQLRLRDIGGQIVIDFIEMRDPEHCREVEKELRNAMKGDRARHDIG 788 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 +S+FGLL++ RQR SS + + + C +CKG G R+ ++ LR + + A Sbjct: 789 KMSSFGLLQIVRQRTGSSAISISMETCPHCKGTGQRRNMEWQSVQTLRDLHRAMRSAAAA 848 Query: 518 ---NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 +++ LYLLN KR + E F + +++ I Sbjct: 849 GQTEYAHSVDAELGLYLLNHKRERLSLMEKEFHIRLDIRIE 889 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 47/82 (57%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KML+ + VV+ D V E E H+ +I+GNIY + ++ +LQAAFV+YG Sbjct: 410 RKMLVSVLPGDMVEVVLTEDGSVREYYVEMTHQAKIRGNIYKGVINNIDTNLQAAFVNYG 469 Query: 63 GNRHGFLPFLEIHPDYYQIPFS 84 ++GFL E+HP+YY P Sbjct: 470 NVKNGFLQIDEVHPEYYLQPHE 491 >gi|302185327|ref|ZP_07262000.1| ribonuclease G [Pseudomonas syringae pv. syringae 642] Length = 485 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKESGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|77457069|ref|YP_346574.1| RNAse G [Pseudomonas fluorescens Pf0-1] gi|77381072|gb|ABA72585.1| ribonuclease G [Pseudomonas fluorescens Pf0-1] Length = 492 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 134/400 (33%), Positives = 219/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 91 ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 149 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E AP Sbjct: 150 ERLKQVVSDCVAKEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQINEQIKTIGAP 209 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 210 SVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 269 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++I+ EA+ +IDVN+G +E+T +TNLE Sbjct: 270 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 329 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQ+RLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL+ Sbjct: 330 AATAIARQMRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 389 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C+ C+G G +++ ++ I R + Y A V + Sbjct: 390 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQ 449 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E G +I + + + + + Sbjct: 450 KVVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 489 >gi|66047386|ref|YP_237227.1| ribonuclease E and G [Pseudomonas syringae pv. syringae B728a] gi|63258093|gb|AAY39189.1| Ribonuclease E and G [Pseudomonas syringae pv. syringae B728a] gi|330950284|gb|EGH50544.1| ribonuclease G [Pseudomonas syringae Cit 7] gi|330969673|gb|EGH69739.1| ribonuclease G [Pseudomonas syringae pv. aceris str. M302273PT] Length = 485 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++I+ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|330807539|ref|YP_004352001.1| ribonuclease G [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375647|gb|AEA66997.1| ribonuclease G [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 485 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ +KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 ISALVHEGQSLVVQVTKDPIVSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + P Sbjct: 143 ERLKQVVSDCVEKEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIAAQIKTIATP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 SVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C+ C+G G +++ +V I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQATGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E EA G +I + + + + + Sbjct: 443 KVVDRLLDEESGNVAELEAFIGRTIRFQVETMYSQEQYDV 482 >gi|295111730|emb|CBL28480.1| ribonuclease, Rne/Rng family [Synergistetes bacterium SGP1] Length = 503 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 132/421 (31%), Positives = 225/421 (53%), Gaps = 5/421 (1%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q ++VQ+ K NKGA VT +SL GRY VL+P+ + +SR+I + +R+ L+ Sbjct: 87 ENQEIVVQVTKTAIKNKGARVTPRISLPGRYLVLVPDGGEAG-VSRRIVDEEERRRLRHF 145 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 AR L+ GVI+RTA + + D E L+ LW + A AP L+Y++ L+ Sbjct: 146 ARELKGD-DFGVIIRTAAEGVDEETLAADVESLLALWREIEHDAELQAAPCLLYKDRGLL 204 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 R +RD + EII+ + R +++ L + V YE PIF G+E ++ Sbjct: 205 GRVLRDEVHGSVDEIILDSAEEMRHVNEYVATLYKTDRPQVSLYEGAVPIFEYYGVEAEI 264 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + + +V L S Y++I TEAL IDVN+G+ + + T L TNLEAA+E+ARQLR Sbjct: 265 EQALERKVWLRSGAYLVIEHTEALTVIDVNTGKYVGDLDMRHTTLATNLEAADEVARQLR 324 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR + G++VVDFIDME +++ + + +L+E + DR+R +V +++ GL+E++R+R R Sbjct: 325 LRSIGGIVVVDFIDMEFEEDRKKLLDRLEEVFQLDRSRARVFSMTQLGLVELTRKRGRPD 384 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 + T+ C +C G++ + ++ALSI R + + A +++ +S V Y+ + Sbjct: 385 LRSVMTRGCPFCNDNGWVLREDTLALSIKRFLRKIAQTNRAEALLLQANSMVAQYVRD-- 442 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + +E V I V + A + IE + A+ + H++ ++ + Sbjct: 443 -TYLAMWERELDVKILVAGMPDFAWSKYRIELQGTLSAVEHRAHQLERREESSIVVHRVP 501 Query: 596 C 596 Sbjct: 502 A 502 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 39/74 (52%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 K++ D EETRV +L R+ ++ E +Q G IY A+V V P + AAFV Sbjct: 8 ERKIIADTREDEETRVAILEGGRLADVFIERMWDRQKAGEIYKARVESVLPGINAAFVTI 67 Query: 62 GGNRHGFLPFLEIH 75 G R+ FL ++H Sbjct: 68 GEGRNAFLYLNDVH 81 >gi|237798586|ref|ZP_04587047.1| ribonuclease G [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021439|gb|EGI01496.1| ribonuclease G [Pseudomonas syringae pv. oryzae str. 1_6] Length = 485 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIAEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++I+ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AAIAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|94968495|ref|YP_590543.1| ribonuclease [Candidatus Koribacter versatilis Ellin345] gi|94550545|gb|ABF40469.1| ribonuclease, Rne/Rng family [Candidatus Koribacter versatilis Ellin345] Length = 1031 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 140/487 (28%), Positives = 241/487 (49%), Gaps = 3/487 (0%) Query: 81 IP-FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 IP +D + E + + + EE + E S Sbjct: 545 IPQVADIEEDFHEHQAEDFEYSNGNGEAVEAAEGEFEEEGEEEGDGEEEEAVAGETGSKP 604 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 D + G P + + I +++K Q +LVQI KE G KGA +T++ Sbjct: 605 RRQFDRGRRGRRGRRGGPPMKNMQSRNTPLISDLLKEGQEILVQIAKEPIGKKGARITSH 664 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 ++L GR+ V MP + + ++ ++ LK I G I+RTA A+ + Sbjct: 665 IALPGRFLVYMPTVNHVGVSRKIASDEERQR-LKRIVSSERENGHGGFIVRTAAANVKED 723 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 E++ D +L LW ++ + S +P L+Y + NL++R +RD D + I V E Y Sbjct: 724 ELRADIRFLKHLWSEIKGRSDKSKSPALIYHDLNLVERVLRDQVTSDFTTIWVDNESEYE 783 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 F PS R ++ Y P+F GI+ +++ + +V L S GY++INQTEAL Sbjct: 784 RVLRFASRFQPSLVRRIKLYTKNTPLFEEFGIQEEINKALKAKVWLKSGGYIVINQTEAL 843 Query: 380 VSIDVNSGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 V+ID+N+G+ + EDT ++TN++A +EI RQ+RLRDL G+IV+DFIDM+E+KN + Sbjct: 844 VAIDINTGKYVGKTTRLEDTIVKTNVDAIKEIVRQIRLRDLGGIIVIDFIDMDERKNRQK 903 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 V L+E+LK DRA +V ++FGL+ ++R+R++ S+ + C+YC+ G+++S + Sbjct: 904 VMAALEEALKSDRAPSKVLQFNDFGLVAITRKRVKQSLERTLGTPCSYCEATGFVKSVPT 963 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + I V + ++ + + +V + + E+E G ++ V + Sbjct: 964 MCSEIYTEVRKLAKHLDGKDVTIRVNPEVAKAIKENNGKLVQEFEELTGKTVIVKSDPAM 1023 Query: 559 ADKLFYI 565 + F I Sbjct: 1024 HQEHFDI 1030 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++ + +S+ ETRV ++ D+++ E+ +E E++ + G+IY +VTRV P +Q+AFVD Sbjct: 1 MNKELYV-SSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVD 59 Query: 61 YGGNRHGFLPFLE 73 G R FL + Sbjct: 60 VGLERDAFLYVSD 72 >gi|169632552|ref|YP_001706288.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter baumannii SDF] gi|169151344|emb|CAP00060.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter baumannii] Length = 488 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 75 NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ I ++ VI+RTA + EI +D YL +LW+ Sbjct: 135 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 193 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL ++ ++I V + + + ++F+ +P+ Sbjct: 194 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 253 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGCS 313 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E + V ++ ++ L++D A+ Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 373 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 5 MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 64 IGLSRTAFLHINDM 77 >gi|330443823|ref|YP_004376809.1| ribonuclease G [Chlamydophila pecorum E58] gi|328806933|gb|AEB41106.1| ribonuclease G [Chlamydophila pecorum E58] Length = 508 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 145/439 (33%), Positives = 248/439 (56%), Gaps = 3/439 (0%) Query: 128 NFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKE 187 N + IS + E + PE + ++ + + I+E++K +LVQ+VKE Sbjct: 59 NIDERENGFIHISDILENSKKFEQMFDADPETLAQEQQEEAPIEELLKLDSPVLVQVVKE 118 Query: 188 ERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGV 247 GNKGA +T+ +S+ GRY VL+PN+ +SRKI + R++LK++ R E+P MG+ Sbjct: 119 PIGNKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDLQMREHLKQLIRSFEMPQNMGL 177 Query: 248 ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDI 307 I RTA + + + + L+ W N+ E ++ L+YEE +++K+A+ ++ Sbjct: 178 ICRTASTTASTEALINEAHDLLLTWKNILEKYHSTDDSCLLYEETDILKKAVITCIDQNY 237 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 +++ Y++ K +K P + Y D P+F R IE ++D + ++ L S Sbjct: 238 KRLLIDDYATYQKCKRMLKKYAPESTVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSS 297 Query: 368 RGYVIINQTEALVSIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 GY+ ++TEA+ +IDVNSGRST+ E +E+T +Q NLEA EEIARQLRLR++ GL+++D Sbjct: 298 GGYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEATEEIARQLRLRNVGGLVIID 357 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDM+ +KN R V ++LKE +K D AR + ++S FGL+EM+RQR R S++++ C Y Sbjct: 358 FIDMKSRKNQRRVLERLKEHMKYDGARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPY 417 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL-LNQKRATIVEYEAR 545 C G+ I++ SV + I RS+++ + N+ + H ++ Y+ L ++ + Sbjct: 418 CNGSASIKTPESVVIEIERSLKKAINHREHLNLCLVVHPEIASYMKLEGDDKELITSAKQ 477 Query: 546 FGVSINVVIGIELADKLFY 564 + + L + Sbjct: 478 LKAKLQITTSDSLHLNHYQ 496 >gi|28871603|ref|NP_794222.1| ribonuclease G [Pseudomonas syringae pv. tomato str. DC3000] gi|213966626|ref|ZP_03394777.1| ribonuclease G [Pseudomonas syringae pv. tomato T1] gi|301383136|ref|ZP_07231554.1| ribonuclease G [Pseudomonas syringae pv. tomato Max13] gi|302063724|ref|ZP_07255265.1| ribonuclease G [Pseudomonas syringae pv. tomato K40] gi|302133802|ref|ZP_07259792.1| ribonuclease G [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854855|gb|AAO57917.1| ribonuclease G [Pseudomonas syringae pv. tomato str. DC3000] gi|213928476|gb|EEB62020.1| ribonuclease G [Pseudomonas syringae pv. tomato T1] gi|330877206|gb|EGH11355.1| ribonuclease G [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963995|gb|EGH64255.1| ribonuclease G [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016672|gb|EGH96728.1| ribonuclease G [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 485 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + + P Sbjct: 143 ERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGDQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++I+ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCVGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E+ G +I + + + + + Sbjct: 443 RVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|169794877|ref|YP_001712670.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter baumannii AYE] gi|260557243|ref|ZP_05829459.1| ribonuclease G [Acinetobacter baumannii ATCC 19606] gi|169147804|emb|CAM85667.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter baumannii AYE] gi|260409349|gb|EEX02651.1| ribonuclease G [Acinetobacter baumannii ATCC 19606] Length = 488 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 75 NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ I ++ VI+RTA + EI +D YL +LW+ Sbjct: 135 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 193 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL ++ ++I V + + + ++F+ +P+ Sbjct: 194 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 253 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E + V ++ ++ L++D A+ Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 373 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 5 MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 64 IGLSRTAFLHINDM 77 >gi|288575350|ref|ZP_06393651.1| cytoplasmic axial filament protein [Neisseria mucosa ATCC 25996] gi|288567891|gb|EFC89451.1| cytoplasmic axial filament protein [Neisseria mucosa ATCC 25996] Length = 396 Score = 244 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 201/393 (51%) Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P R + Sbjct: 1 MLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGISQRIEDDAERNSLR 60 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + + L A G I+RT + T +++ D YL ++W++++E A L+Y++ Sbjct: 61 ERLTNLLPEDACHGYIIRTNAENATDEQLQSDIHYLTKVWEHIQEQAKIQPPETLLYQDL 120 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 L R +RD++ D +I+V + +R F + + + ++ P+F +E Sbjct: 121 PLSLRVLRDMFSLDTQKILVDSTENHRRMTRFAEQYVHGALGRIELFKGERPLFETHNVE 180 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 ++ Q V L Y+II TEA+ +IDVN+G ++T +TNLEA IAR Sbjct: 181 QEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLEACHTIAR 240 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 +LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + ++ GL+E++R+R Sbjct: 241 ELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGFTSLGLVELTRKRS 300 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 R ++ + + C C+G G +++ ++ I R + +Y + + +V+ L Sbjct: 301 RENLSQILCEPCPSCQGRGRLKTPQTICYEIQREIVREARRYDVQSFRILAAPNVIDLFL 360 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +++ ++ G I++ + + + I Sbjct: 361 DEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 393 >gi|70728282|ref|YP_258031.1| ribonuclease G [Pseudomonas fluorescens Pf-5] gi|68342581|gb|AAY90187.1| ribonuclease G [Pseudomonas fluorescens Pf-5] Length = 485 Score = 244 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 134/400 (33%), Positives = 219/400 (54%), Gaps = 5/400 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 ISALVHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + AP Sbjct: 143 ERLKQVVSDCVAQEGIKEAGGFILRTAAEGAGADEIMMDIRYLRRLWDQIGAQIKTIGAP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 +++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 NVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQKTTVFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++++ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME++++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C+ C+G G +++ +V I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCSSCQGRGKLKTPETVCYEIFREILREARAYQAEGYRVLANQ 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 VV LL+++ + E E G +I + + + + + Sbjct: 443 KVVDRLLDEESGNVAELEGFIGRTIRFQVETMYSQEQYDV 482 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAFVD Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|262371811|ref|ZP_06065090.1| ribonuclease G [Acinetobacter junii SH205] gi|262311836|gb|EEY92921.1| ribonuclease G [Acinetobacter junii SH205] Length = 486 Score = 244 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 123/412 (29%), Positives = 212/412 (51%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ Q L VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 73 NDMVWPRSQPTPNVFELLHPGQTLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 132 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + L+ I ++ VI+RTA + I +D YL +LW+ Sbjct: 133 GVSQRIEQEEERDR-LRGIIEHIQTEHKLPGSVIVRTAAEGVDEASIAQDMCYLSKLWEF 191 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ P L++EE L +R +RDL + ++I V + + + +F+ +PS Sbjct: 192 IQRKQKEVSTPELIFEELPLPQRIVRDLASDETAKIYVDSREIHGKLSEFVHEFVPSIEN 251 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 252 RLIHYPGEKPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 311 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E ++ V ++ ++ L++D A+ Sbjct: 312 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAEHRAEVMRQFEKMLERDHAKT 371 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 ++ +S GL+EM+R+R R S+ + C C+G GY+++ +V I R + Y + Sbjct: 372 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCYEIFREILRYARAF 431 Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + V H V+ LL + + + E I + + + I Sbjct: 432 DSKSGFTVVAHPAVIDRLLTAEAPAVADLEHFVNRVIKFQVENLYTQEQYDI 483 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA ++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 3 MAEELLINVT-PMECRVALIENGTVNELFVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 61 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 62 IGLSRTAFLHINDM 75 >gi|188532445|ref|YP_001906242.1| ribonuclease G [Erwinia tasmaniensis Et1/99] gi|188027487|emb|CAO95334.1| Ribonuclease G [Erwinia tasmaniensis Et1/99] Length = 489 Score = 244 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 196/413 (47%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 KK I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEKKNFIVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK + G G I+RTA + E+ D +L RLW Sbjct: 136 ASHVGVSQRIESEAERNR-LKAVVAAYCDELG-GYIIRTAAEGVGEDELASDAAFLKRLW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I + + +F +P Sbjct: 194 TKVIERKKRNKTRCRLYGEVALSQRILRDFAGAALDRIRIDSRLSFEHLLEFTGEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TAKLELYTGKQPIFDLFDVENEIQRSLDRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ + C CKG G +++ +V I+R + Sbjct: 374 KTGVNGFSQLGLVEMTRKRTRESIEHVLCQDCRVCKGRGTLKTVETVCYEIMREIVRVHH 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L + + + E E G + V + + F + Sbjct: 434 AYDSDRFLVYASPSVGEALKSDESHALAEVEIFVGKQVKVQVEPLYTQEQFDV 486 >gi|51246433|ref|YP_066317.1| cytoplasmic axial filament protein (ribonuclease G) [Desulfotalea psychrophila LSv54] gi|50877470|emb|CAG37310.1| related to cytoplasmic axial filament protein (ribonuclease G) [Desulfotalea psychrophila LSv54] Length = 518 Score = 244 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 128/404 (31%), Positives = 227/404 (56%), Gaps = 2/404 (0%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 + I++++ Q ++VQ+ K+ G KGA +T +++L R V +P T +SR Sbjct: 113 NPRTQGIRIEDLLSEGQNIIVQVTKDPIGTKGARLTCHITLPCRNLVFIPQTDHIG-VSR 171 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + R+ LK+ + G+G I+RT T+ E++ D E+L+ LWD + + Sbjct: 172 KIDDETLREELKKQIEEIRPE-GVGFIVRTVAEHATREELEADMEFLLILWDEIIVKISH 230 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + +P L++E+ ++ R++RD + D+ +I+ EK Y++ F+K P + Y D Sbjct: 231 AKSPELIHEDLDITLRSVRDFFTIDVDRLIIDDEKDYKKLLGFVKTFAPQLHNKISLYTD 290 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 P P+F IEV++ + +V L S GY+II TEAL IDVN+GR ++ + DT + Sbjct: 291 PIPLFDAYNIEVEIAKAIEKKVWLRSGGYIIIESTEALSVIDVNTGRFVGKNNLNDTIFK 350 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TN+EAA+EIA QLRLR++ G+I++DFIDME ++ + + +E++KKD++R+ + +S Sbjct: 351 TNIEAAKEIADQLRLRNIGGIIIIDFIDMESAEHREQLYETFQEAVKKDKSRINILKLSE 410 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 FGL++M+R+R ++ + + C YC G G I+S+ ++ I R + + + + + Sbjct: 411 FGLVQMTRKRSSENLYQLMCESCHYCSGEGMIKSRRTICYDIFRKLSRHTNKNHGTTVTL 470 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 H + L N++ T+ E G I V +L + + I Sbjct: 471 RVHPRIADILENEEELTLGTVEKDIGRRIIVASSKDLHIEKYEI 514 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +LI+ S E R+ ++ + + E + +K + GNIY KV RV P +QAAFVD Sbjct: 22 MSTDILIN-SRSYEVRLALVENGNLSEFHMQRPTEKGLMGNIYKGKVVRVLPGMQAAFVD 80 Query: 61 YGGNRHGFLPFLEI 74 G R GFL ++ Sbjct: 81 IGLERTGFLYVDDV 94 >gi|284040810|ref|YP_003390740.1| ribonuclease, Rne/Rng family [Spirosoma linguale DSM 74] gi|283820103|gb|ADB41941.1| ribonuclease, Rne/Rng family [Spirosoma linguale DSM 74] Length = 520 Score = 243 bits (620), Expect = 6e-62, Method: Composition-based stats. Identities = 126/566 (22%), Positives = 229/566 (40%), Gaps = 63/566 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+N+++I ++ + R+ +L++ R+ E E G++YL V ++ L AAFVD Sbjct: 1 MSNELVISSTQKGD-RIALLQNKRLLEYHEEELDSSFTVGDLYLGTVKKLSSGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + GFL + ++ P+ + DV VT + Sbjct: 60 VGHEKDGFLHYQDLGPN-------------------INSLNKLVKDVIAKRVTTGRLNQN 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + I + + + + + G +Y + + L Sbjct: 101 QLEPVIDKIGKIDKVLTKNAPILVQIVKEPISTKGPRLSCDISIAGRYLVLVPFSDGVNL 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I ++ + S L P I R + D + L + Sbjct: 161 SKKITDRAERSRLMRL---------MSSLKP--KNFGVIVRTVAQDKDVEELDRDLQHSL 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + + E N +R Sbjct: 210 AKWD-----------------------------QAIKSLSEAKPRDRILGEMNRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + I V + + E +D++ + P +IV+ + +F G+E QL SL Sbjct: 241 DMLNESFESITVDTRESFDEIRDYIHTIAPDKEKIVKLHTGKTKVFEALGLEKQLKSLFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V+LP GY+II TEAL IDVNSG +S E E TA+ N EAA+EIARQLRLRD+ Sbjct: 301 RSVSLPGGGYLIIEHTEALHVIDVNSGNKSNSEEDQEATAISVNREAAKEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IV+DFIDM++ +N + ++ +++ +K +R++ + ++ FGL++++RQR+R + Sbjct: 361 GGIIVIDFIDMKKAENKKLLQDIMRDEMKPERSKFTILPLTKFGLMQITRQRVRPEMNIV 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV-VLYLLNQKRAT 538 T +VC C G G I++ V I +++ L + I + + + Y Sbjct: 421 TREVCPTCGGTGTIQASVLVTDVIENNLDYILTKQNERGISISMNPFLYAYYTKGIYSKQ 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 + ++ ++ + +V L F Sbjct: 481 M-QWYMKYKTWVKIVKDTSLGIVNFK 505 >gi|213157796|ref|YP_002320594.1| ribonuclease G [Acinetobacter baumannii AB0057] gi|215482425|ref|YP_002324607.1| Ribonuclease G(RNase G) (Cytoplasmic axial filamentprotein) [Acinetobacter baumannii AB307-0294] gi|239502359|ref|ZP_04661669.1| ribonuclease G and E [Acinetobacter baumannii AB900] gi|301511189|ref|ZP_07236426.1| ribonuclease G, endoribonuclease G [Acinetobacter baumannii AB058] gi|193078229|gb|ABO13189.2| ribonuclease G endoribonuclease G [Acinetobacter baumannii ATCC 17978] gi|213056956|gb|ACJ41858.1| ribonuclease G [Acinetobacter baumannii AB0057] gi|213987481|gb|ACJ57780.1| Ribonuclease G(RNase G) (Cytoplasmic axial filamentprotein) [Acinetobacter baumannii AB307-0294] gi|323519288|gb|ADX93669.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter baumannii TCDC-AB0715] Length = 469 Score = 243 bits (620), Expect = 6e-62, Method: Composition-based stats. Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 56 NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 115 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ I ++ VI+RTA + EI +D YL +LW+ Sbjct: 116 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 174 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL ++ ++I V + + + ++F+ +P+ Sbjct: 175 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 234 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 235 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 294 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E + V ++ ++ L++D A+ Sbjct: 295 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 354 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 355 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 414 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 415 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 466 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 + ++ + V EL E K+ + GNIY KV RV P +QAAFVD G +R FL ++ Sbjct: 1 MALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVDIGLSRTAFLHINDM 58 >gi|188995255|ref|YP_001929507.1| putative ribonuclease E [Porphyromonas gingivalis ATCC 33277] gi|188594935|dbj|BAG33910.1| putative ribonuclease E [Porphyromonas gingivalis ATCC 33277] Length = 519 Score = 243 bits (620), Expect = 6e-62, Method: Composition-based stats. Identities = 124/430 (28%), Positives = 216/430 (50%), Gaps = 4/430 (0%) Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 ++++ + + S + ++ I +V+K Q +LVQI KE KG + Sbjct: 78 DAQQKMMEMMTKSKSIPSLSKVPLGSDLPKEGKIADVLKAGQQILVQIAKEPISTKGPRL 137 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 T LS AGR VL+P K + + + + I P VI+RT+ + Sbjct: 138 TAELSFAGRSLVLVPFADKVSVSQKIRSAEERARLRQLIIS--IKPKNFSVIIRTSAEGK 195 Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316 E+ ++ + L+R WD+ + L + AP +VYEE + +RD + IIV+ + Sbjct: 196 RASELDKELQSLLRRWDDNIKKLLRAKAPSIVYEEASRTLGLLRDNFNPSYQSIIVNDKA 255 Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 D+++L+ P IV+ Y+ PIF I Q+ +L VT S Y+II QT Sbjct: 256 FRDSLSDYVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQT 315 Query: 377 EALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN 435 EA+ +DVNSG +R ++ TA+ N+ AAEE+ARQLRLRD+ G+IVVDFIDM E ++ Sbjct: 316 EAMHVVDVNSGNRSRGSTEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQH 375 Query: 436 NRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 + + + + + + DRAR + +S FG+++++RQR+R +++ T + C C G G + S Sbjct: 376 RQQLYEHMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVES 435 Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVI 554 + V + + ++ ++H H V YL + + +++ ++ I ++ Sbjct: 436 SILFTDQLEEKVAKMVTEHQVKQFVLHVHPYVAAYLKKGFLSSILKKWKLKYAKGIKLIP 495 Query: 555 GIELADKLFY 564 L + Sbjct: 496 DESLGFLDYT 505 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + VL D ++ EL E + G+IYL KV +V P L AAFVD Sbjct: 1 MNSELVIDVK-PKEVSMAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIH 75 G + FL +L++ Sbjct: 60 VGYKKDAFLHYLDLG 74 >gi|312792692|ref|YP_004025615.1| ribonuclease, rne/rng family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179832|gb|ADQ40002.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 571 Score = 243 bits (619), Expect = 8e-62, Method: Composition-based stats. Identities = 143/477 (29%), Positives = 232/477 (48%), Gaps = 14/477 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162 +D ++ I + S V I E + +A N N G Sbjct: 20 EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79 Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+P+T Sbjct: 80 DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPSTEYVGVS 139 Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R + ++ + + P GMG+I+RTA +++ +K + E+L +W ++ Sbjct: 140 KRIESEEERQR-----LKEIACRLKPEGMGLIVRTAAEGKSEEILKSELEFLKNMWGRIK 194 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + + S AP L+Y++ +L+ +A+RD++ + +++ K Y + +F+ PS V Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIMEFLSSYAPSLKSKV 253 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + IF IE +L V L S GY++I++TEAL IDVN+G+ + + Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T L+TNLEAA EIARQLRLRD+ G+I++DFIDM+ ++ + V LKE+LK+D+ + V Sbjct: 314 ETILKTNLEAAHEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 I+ GL+EM+R++IR + C YC+G G I S SVA +L+ +E Y Sbjct: 374 VDITPLGLVEMTRKKIRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 V H+ V L + I E E ++ I V + F I Sbjct: 434 DKFFVEIHTKVCEILRKGEIDRIKELEQKYKKKIYVKASSNIHINKFTICPVKDEDH 490 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S +TRV VL D + E+ E E + I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G ++ FL +++ +YY+I Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87 >gi|56459496|ref|YP_154777.1| ribonuclease G [Idiomarina loihiensis L2TR] gi|56178506|gb|AAV81228.1| RNase G [Idiomarina loihiensis L2TR] Length = 489 Score = 243 bits (619), Expect = 8e-62, Method: Composition-based stats. Identities = 118/411 (28%), Positives = 203/411 (49%), Gaps = 2/411 (0%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + K Q I E++ Q ++VQ+VK+ G KGA +TT ++L RY V MP + Sbjct: 78 DGDDLPRPDEKPQQSITELVHQGQHIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPKSD 137 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + I+RTA + ++ D ++L RLW+ Sbjct: 138 HVGVSQRIEEGEERERL--RQLAEEVSKSDGKFIVRTAAEGASDQSLRGDADFLFRLWEK 195 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ + ++YE+ NL R +RD ++I I V + + K F + +P + Sbjct: 196 IKARKKSQRKVGMLYEDLNLSCRVLRDFVGEEIERIRVDSKVTFDTLKVFTQDFIPELTK 255 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 ++ Y PIF +E ++ V L S G +II+QTEA+ ++D+N+G Sbjct: 256 VLEYYTGDRPIFDLFDVENEMQRALDRRVDLKSGGSLIIDQTEAMTTVDINTGAFVGHRN 315 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +E+T TN+EA + IARQLRLR+L G+I++DFIDM+++++ R V L+++L KDRA+ Sbjct: 316 LEETIFNTNIEATQSIARQLRLRNLGGIIIIDFIDMQDEEHKRRVLHSLEQALGKDRAKT 375 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 + ++ GL+EM+R+R R S+ C C G G +++ +V I+R + Y Sbjct: 376 TINGFTSLGLVEMTRKRTRESLEHVLCSECPVCLGRGSMKTVETVCYEIMREIVRVHKAY 435 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ + V LLN++ + E E I + + F + Sbjct: 436 EADKFVVYASAQVSEALLNEESHALAELELFVSRQIKIQTEPLYNQEQFDV 486 >gi|91794678|ref|YP_564329.1| ribonuclease G [Shewanella denitrificans OS217] gi|91716680|gb|ABE56606.1| RNAse G [Shewanella denitrificans OS217] Length = 496 Score = 243 bits (619), Expect = 8e-62, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 195/413 (47%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 D K+ I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP+ Sbjct: 84 HTECVADTEKRNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPD 143 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + + V A G I+RTA + E+ +D +L R+W Sbjct: 144 SSHVGVSQRIEVEAERNR--LKNITLPYVDADGGFIIRTAAEGVGEDELAQDAAFLRRVW 201 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R IRD ++ I V + Y E F + MP Sbjct: 202 AKVSERR-KRKGVTLLYQDLALPVRIIRDFVGTELDHIQVDSSQTYDELSLFAQEFMPEI 260 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P IF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 261 ADKIEHYSGPAAIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 320 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM+ ++ V L+ +L KDR Sbjct: 321 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMQNAEHKSRVLASLQSALSKDRV 380 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + S GL+EM+R+R R S+ C C G G +++ +V+ I R + Sbjct: 381 KTSISGFSGLGLVEMTRKRTRESLEHVVCGECPSCHGTGSMKTIETVSYEIFRELIRLNS 440 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + E G + + A + + Sbjct: 441 TYAADEFLIYCSPAVYNSLHGDDSHLLAELGVYIGKRLRLQSEPMYAQNKYDV 493 >gi|184159348|ref|YP_001847687.1| ribonuclease G and E [Acinetobacter baumannii ACICU] gi|301347345|ref|ZP_07228086.1| ribonuclease G, endoribonuclease G [Acinetobacter baumannii AB056] gi|301594367|ref|ZP_07239375.1| ribonuclease G, endoribonuclease G [Acinetobacter baumannii AB059] gi|332853440|ref|ZP_08434759.1| ribonuclease G [Acinetobacter baumannii 6013150] gi|332870577|ref|ZP_08439319.1| ribonuclease G [Acinetobacter baumannii 6013113] gi|332874211|ref|ZP_08442133.1| ribonuclease G [Acinetobacter baumannii 6014059] gi|183210942|gb|ACC58340.1| Ribonuclease G and E [Acinetobacter baumannii ACICU] gi|322509260|gb|ADX04714.1| Ribonuclease G and E [Acinetobacter baumannii 1656-2] gi|332728646|gb|EGJ60014.1| ribonuclease G [Acinetobacter baumannii 6013150] gi|332732137|gb|EGJ63406.1| ribonuclease G [Acinetobacter baumannii 6013113] gi|332737570|gb|EGJ68475.1| ribonuclease G [Acinetobacter baumannii 6014059] Length = 484 Score = 243 bits (619), Expect = 8e-62, Method: Composition-based stats. Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 71 NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 130 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ I ++ VI+RTA + EI +D YL +LW+ Sbjct: 131 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 189 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL ++ ++I V + + + ++F+ +P+ Sbjct: 190 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 249 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 250 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 309 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E + V ++ ++ L++D A+ Sbjct: 310 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 369 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 429 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 430 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 481 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 1 MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 60 IGLSRTAFLHINDM 73 >gi|302872528|ref|YP_003841164.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor obsidiansis OB47] gi|302575387|gb|ADL43178.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor obsidiansis OB47] Length = 571 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 145/477 (30%), Positives = 232/477 (48%), Gaps = 14/477 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162 +D ++ I + S V I E + +A N N G Sbjct: 20 EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79 Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+PNT Sbjct: 80 DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPNTEYVGVS 139 Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R ++ + + P GMG+I+RTA +++ +K + E+LM +W +R Sbjct: 140 KRIEVEDERQR-----LKEIACRLKPEGMGLIIRTAAEGKSEEILKSELEFLMNVWKKIR 194 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + S AP L+Y++ +L+ +A+RDL+ + +++ K Y + +F+ PS V Sbjct: 195 LKSCQS-APVLLYKDYDLVFKAVRDLFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + IF IE +L V L S GY++I++TEAL IDVN+G+ + + Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+ ++ + V LKE+LK+D+ + V Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 I+ GL+EM+R+++R + C YC+G G I S SVA +L+ +E Y Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 V ++ V L + I E E ++ I V + F I Sbjct: 434 DKFFVEVNTKVCEILRKGEIDRIKELEQKYKKKIYVKASSNIHINKFTICPIKDEDH 490 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S +TRV VL D + E+ E E + I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G ++ FL +++ +YY+I Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87 >gi|119899901|ref|YP_935114.1| putative ribonuclease [Azoarcus sp. BH72] gi|119672314|emb|CAL96228.1| putative ribonuclease [Azoarcus sp. BH72] Length = 503 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 114/410 (27%), Positives = 203/410 (49%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + I+ ++ Q L+VQ++K+ G KGA ++T +S+AGR V +P Sbjct: 91 DIWSDRQNGEAAKPIERILAEGQSLVVQVLKDPIGTKGARLSTQISIAGRLLVYLPQEKH 150 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R + + R + G I+RT S + E+ D YL +LW+ + Sbjct: 151 IGISQRIENETEREALRERLTRLVPADEPGGFIVRTMAESASDDELAADIAYLRKLWNEI 210 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 R + + P L++E+ L +R +RDL ++ + I V + +++ F P + Sbjct: 211 RNNSTGAFPPKLLHEDLGLGQRVLRDLVNEETTRIRVDSRENFQKLAAFAAEYSPKVLPL 270 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F IE ++ V L S GY+II+QTEA+ ++DVN+G Sbjct: 271 LEHYTGERPLFDIFNIEEEIQKALARRVDLKSGGYLIIDQTEAMTTVDVNTGGFVGARNF 330 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT +TNLEA + IARQLRLR+L G+I++DFIDME ++ V ++ +++L +D ++ Sbjct: 331 DDTIFKTNLEATQAIARQLRLRNLGGIIIIDFIDMENVEHREMVLEEFRKALARDHTKMS 390 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 + + GL+EM+R+R R S+ + C C G G +++ +VA +LR + Q+ Sbjct: 391 INGFTALGLVEMTRKRTRESLAHLLCEACPTCGGRGEVKTARTVAYEVLRELLREARQFN 450 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A V +V+ L+++ ++ I++ + F I Sbjct: 451 AREFRVLAAPNVIDLFLDEESQSLAMLSDFIDKKISLHPEASYTQEQFDI 500 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ + LI+ + +ETRV ++ V+EL E + I GNIYL KV RV P +Q+AF++ Sbjct: 20 MSIEFLINFT-PQETRVAIVEQGVVQELHVERTASRGIVGNIYLGKVVRVLPGMQSAFIE 78 Query: 61 YGGNRHGFLPFLEIHPD 77 G R FL +I D Sbjct: 79 IGLERTAFLHVADIWSD 95 >gi|294101612|ref|YP_003553470.1| ribonuclease, Rne/Rng family [Aminobacterium colombiense DSM 12261] gi|293616592|gb|ADE56746.1| ribonuclease, Rne/Rng family [Aminobacterium colombiense DSM 12261] Length = 499 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 234/472 (49%), Gaps = 3/472 (0%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 D V I L ++ + ++ E + + V+ + + Sbjct: 12 DPEEMRVAILEKGKLVDIFVERMWERQKTGEIYKARVDSVLPGIHAAFVNLGDGRNAFLY 71 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 +K ++VQ+VK R NKGA VT+ +SL GRY VL+P+ + R I Sbjct: 72 LNDAKGINLKPNVEVVVQVVKAARKNKGARVTSRISLPGRYLVLVPDGQETGVSKRIIDE 131 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ + + G GVI+RTA + + D L+ LW +R A AP Sbjct: 132 EERKRLRFLAKKLRDEGEGYGVIIRTAAEGVDEETLTHDLHTLVDLWREIRHDAQIQAAP 191 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y + L+ R +RD D+SEI++ E+ + KD++ ++ V YE PI Sbjct: 192 CLIYRDIGLVGRVLRDELTGDVSEIVIDSEEECHKVKDYLNRILEGQEPEVSLYEGSSPI 251 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F GIE +L++ +V L S Y+II+ TEAL IDVN+G+ + + T L TNLE Sbjct: 252 FDFYGIERELETALDRKVWLRSGAYLIIDHTEALTVIDVNTGKYVGDTDLRHTVLDTNLE 311 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+EIARQLRLR + G++V+DFIDME +++ + + ++L E +KDR R ++ +S GL+ Sbjct: 312 AADEIARQLRLRAIGGIVVIDFIDMEYEEDRQKLLQRLDEVFQKDRYRARIFGVSQLGLV 371 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E++R+R R V T+ C +C G G++ + SVA+ I R + + L A +++ THS Sbjct: 372 EITRKRARPDVRSVMTRGCPFCGGYGWVLKEDSVAMHIKRFLRKVSLSNKADAMLLETHS 431 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 + Y+ + + +E I + E A + ++ P+ + Sbjct: 432 VIAQYIAD---TYLAVWEEELQRRIFIAAAPEFAWNKYRLDMQGPIDVVERR 480 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 1 MA-NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++ + EE RV +L ++ ++ E ++Q G IY A+V V P + AAFV Sbjct: 1 MTDRKIIANTLDPEEMRVAILEKGKLVDIFVERMWERQKTGEIYKARVDSVLPGIHAAFV 60 Query: 60 DYGGNRHGFLPFLE 73 + G R+ FL + Sbjct: 61 NLGDGRNAFLYLND 74 >gi|152999051|ref|YP_001364732.1| ribonuclease G [Shewanella baltica OS185] gi|151363669|gb|ABS06669.1| ribonuclease, Rne/Rng family [Shewanella baltica OS185] Length = 502 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 90 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + + V G I+RTA + E+ +D +L R+W Sbjct: 150 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 207 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 208 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQSFAQEFMPEI 266 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 267 AEKIEHYSGPAPIFDLYDVENEIQRALCRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM + V L +L KDR Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMVTADHKARVLSSLTSALSKDRV 386 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V+ + R + Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 446 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + I E E G I + + + + Sbjct: 447 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 499 >gi|213024720|ref|ZP_03339167.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 344 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 168/297 (56%), Gaps = 2/297 (0%) Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+ Sbjct: 14 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 73 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TR IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R+VE +L+E++++ Sbjct: 74 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 133 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+ IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 134 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 193 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568 L+ + + YLLN+KR + E R GV +V ++ + + + Sbjct: 194 EALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRV 253 Query: 569 SPVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + +A + E + P + ++ D+ E Sbjct: 254 RKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEP 310 >gi|294139078|ref|YP_003555056.1| ribonuclease G [Shewanella violacea DSS12] gi|293325547|dbj|BAJ00278.1| ribonuclease G [Shewanella violacea DSS12] Length = 500 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 122/396 (30%), Positives = 193/396 (48%), Gaps = 3/396 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++++ Q ++VQ+VK+ G KGA +TT ++L RY V MP +S R + Sbjct: 105 IAQLVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHIGVSQR--IESEEV 162 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + + V G I+RTA S + E+ +D +L R+W V E L+Y Sbjct: 163 RARLKGLTQPFVDEDGGFIIRTAAESAGEQELVQDAAFLRRVWAKVSERR-KRRGVSLLY 221 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ L R +RD ++ +I V + E + F + MP A + Y P PIF Sbjct: 222 QDLALPVRIVRDFVGTELDQIRVDSSMTFDELQTFTQEFMPEIADKIEHYSGPAPIFDLY 281 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E ++ +V L S GY+II+QTEA+ ++D+N+G +EDT TNLEA + Sbjct: 282 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEDTIFNTNLEATQA 341 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM + + + V L+ +L DR + + S GL+EM+R Sbjct: 342 IARQLRLRNLGGIIIIDFIDMLDADHQKRVLNSLELALSMDRVKTNISGFSGLGLVEMTR 401 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ C C G G +++ +V+ I R + Y A IV+ V Sbjct: 402 KRTRESLEHVVCGECPICLGTGSLKTVETVSYEIFREIIRLDRSYKADEFIVYCSPAVHH 461 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L + E G + + A F + Sbjct: 462 SLTGDDSHLVAELGVYIGKRVKLKNEPMYAQNKFDV 497 >gi|256820306|ref|YP_003141585.1| ribonuclease, Rne/Rng family [Capnocytophaga ochracea DSM 7271] gi|315223335|ref|ZP_07865194.1| ribonuclease G [Capnocytophaga ochracea F0287] gi|256581889|gb|ACU93024.1| ribonuclease, Rne/Rng family [Capnocytophaga ochracea DSM 7271] gi|314946666|gb|EFS98655.1| ribonuclease G [Capnocytophaga ochracea F0287] Length = 514 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 131/568 (23%), Positives = 227/568 (39%), Gaps = 67/568 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S +LRD R+ EL E + G+I LAKV + L AAFV+ Sbjct: 1 MDKELII-RSGSSYVDFALLRDGRLIELHKEEDTNGLGVGDIMLAKVRKPIQGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P + LK Sbjct: 60 VGHEKDAFLHYHDLGPQ-----LASLLKFLK----------------------------- 85 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + D+ N + P + I + Sbjct: 86 ----WVISGKLKDFSLKDFPLEPDIDKNGSVAETLKPNQPILVQIVKEPIST---KGPRI 138 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 ++ R + +S++ + + K Sbjct: 139 SSELSIAGRYLVLVPFSDRISIS----------------QKIEGKAEKERLRK--LLQGI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G GVI+RT + E+ +D + L W + +V P V E N +R Sbjct: 181 KPKGFGVIVRTVAEGKKVAELDKDLQSLFNRWVLMCRKIQKAVFPSKVMSEVNKTGAILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I V E+ Y + K +++ + P IV+ Y PIF + IE Q+ + Sbjct: 241 DMFNDSFTGIHVDNEQLYEQIKKYVQEIAPEKENIVKLYHSSVPIFEKFHIERQIKTAFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419 V++P Y++I TEAL IDVNSG + ++ ++ TAL NL AA EIARQLRLRD+ Sbjct: 301 RTVSMPKGAYLVIEHTEALHVIDVNSGNHSNKNNDQETTALSVNLIAATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM +N R + L+ + +DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMGNSENRRVLFDHLRNEMAEDRAKHKILPPSKFGLIQITRQRVRQELNIK 420 Query: 480 TTKVCTYCKGAGY--IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 T + +G I + + + ++E + I+++ H + YL + Sbjct: 421 TKEENPSKEGEIEAPIVLIDKINIELESIIKEEAYKGR---IVLNAHPFIAAYLTKGLFS 477 Query: 538 TIV-EYEARFGVSINVVIGIELADKLFY 564 +I ++ ++ I ++ + Sbjct: 478 SIRFKWFLKYKRWIKILPRDAYTYLEYR 505 >gi|282857425|ref|ZP_06266658.1| ribonuclease G [Pyramidobacter piscolens W5455] gi|282584710|gb|EFB90045.1| ribonuclease G [Pyramidobacter piscolens W5455] Length = 547 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 142/492 (28%), Positives = 240/492 (48%), Gaps = 6/492 (1%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 D V I + L E+ + + E + V+ + G + Sbjct: 61 DPEEARVAIVENGRLSELFIERMWECQKSGEIYKARVESVLPGMNAAFVGLGDGRNGFLY 120 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ +LVQ+VK R NKGA VT +SL GRY VL+P + +S++I Sbjct: 121 LNDARGVKVQQNGEVLVQVVKTARKNKGARVTARISLPGRYLVLVPG-GRDVGVSKRIVK 179 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 +R LKE R L+ G GVILRTA + D + L +LW ++ + A AP Sbjct: 180 EEERMRLKETIRSLDTV-GYGVILRTASEGVDADALADDLKRLKKLWRDIEDSAAKQTAP 238 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL-MPSYARIVRQYEDPHP 344 L+Y++ L+ R +RD ++S+I+V ++ Y D+++ + + P Sbjct: 239 CLLYKDMGLVGRVLRDELSSEVSQIVVDNQEEYDRVADYLERYRAAEKTPTLSFHRSNIP 298 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F +E ++D+L +V L S Y++++QTEAL IDVN+G+ T + +T L TNL Sbjct: 299 LFEYYDVEKEIDALLDNKVWLKSGAYLVVDQTEALTVIDVNTGKYTGGRNLRETVLATNL 358 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAAEEIA QL+LR + G++VVDFIDME +++ +++ KL E DR RV+V IS GL Sbjct: 359 EAAEEIAWQLKLRSIGGIVVVDFIDMEPEEDKKALLAKLDEVFAADRCRVRVYGISPLGL 418 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R R+ + T+ C C + + S+AL + R + + L A ++V + Sbjct: 419 VEMTRKRARADLRSVLTRPCPLCGSGSRVLKEDSLALMLKRFIRKVFLSGRAEAVLVDVN 478 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 V Y + + +E FG I + +++ + F ++ + ++ + S Sbjct: 479 ESVAAYAA---QVYLSSWEETFGRKIFLRGRLDMPLEKFRLDLQGSLSSVESRVELTRSR 535 Query: 585 SQAPSYDKNIEC 596 + + Sbjct: 536 GDTSVVYRTTDP 547 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 5 MLI--DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +LI + EE RV ++ + R+ EL E + Q G IY A+V V P + AAFV G Sbjct: 53 ILILANTIDPEEARVAIVENGRLSELFIERMWECQKSGEIYKARVESVLPGMNAAFVGLG 112 Query: 63 GNRHGFLPFLE 73 R+GFL + Sbjct: 113 DGRNGFLYLND 123 >gi|284799610|ref|ZP_06390242.1| cytoplasmic axial filament protein [Neisseria subflava NJ9703] gi|284797520|gb|EFC52867.1| cytoplasmic axial filament protein [Neisseria subflava NJ9703] Length = 396 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 200/393 (50%) Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 ++ Q +LVQ++K+ KGA ++T +SLAGR+ V +P R + Sbjct: 1 MLFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGISQRIEDDAERSSLR 60 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + + L A G I+RT + + +++ D YL ++W+++++ A L+Y++ Sbjct: 61 ERLNNLLPENACHGYIIRTNAENASDAQLQSDINYLTKVWEHIQKQAKIQPPETLLYQDL 120 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 L R +RD++ D +I+V + +R F + + + ++ P+F IE Sbjct: 121 PLSLRVLRDMFSLDTHKILVDSTENHRRMTQFAEQYVQGALGRIELFKGERPLFETHNIE 180 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 ++ Q V L Y+II TEA+ +IDVN+G ++T +TNLEA IAR Sbjct: 181 QEIARALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLEACHTIAR 240 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 +LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + ++ GL+E++R+R Sbjct: 241 ELRLRNLGGIIIIDFIDMAQEAHREAVLQELAKALAFDRTRVTLNGFTSLGLVELTRKRS 300 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 R ++ + + C C+G G +++ +V I R + +Y + +V+ L Sbjct: 301 RENLSQILCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDVQAFRILAAPNVIDLFL 360 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +++ ++ G I++ + + + I Sbjct: 361 DEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 393 >gi|304411557|ref|ZP_07393170.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183] gi|307306667|ref|ZP_07586409.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175] gi|304350084|gb|EFM14489.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183] gi|306910635|gb|EFN41064.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175] Length = 488 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + + V G I+RTA + E+ +D +L R+W Sbjct: 136 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 194 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFTELQSFAQEFMPEI 252 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 253 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM + V L +L KDR Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMMTADHKARVLSSLTSALSKDRV 372 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V+ + R + Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 432 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + I E E G I + + + + Sbjct: 433 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 485 >gi|160873644|ref|YP_001552960.1| ribonuclease G [Shewanella baltica OS195] gi|217971732|ref|YP_002356483.1| ribonuclease G [Shewanella baltica OS223] gi|160859166|gb|ABX47700.1| ribonuclease, Rne/Rng family [Shewanella baltica OS195] gi|217496867|gb|ACK45060.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223] gi|315265873|gb|ADT92726.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678] Length = 488 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + + V G I+RTA + E+ +D +L R+W Sbjct: 136 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 194 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQSFAQEFMPEI 252 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 253 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 312 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM + V L +L KDR Sbjct: 313 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMMTADHKARVLSSLTSALSKDRV 372 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V+ + R + Sbjct: 373 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 432 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + I E E G I + + + + Sbjct: 433 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 485 >gi|299140822|ref|ZP_07033960.1| ribonuclease G [Prevotella oris C735] gi|298577788|gb|EFI49656.1| ribonuclease G [Prevotella oris C735] Length = 524 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 241/566 (42%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D + E E QA+F Sbjct: 1 MTSEVVIDVRE-KEISIALLEDKNLVEYQNEPR---------------------QASF-S 37 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G I + + L+ N D D H +S Sbjct: 38 VG-----------------NIYAAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + N ++ + + + +Q+V+ Q + Sbjct: 81 AKYLKQVNSDRKRLYPFSKAQRLPDLK------------------KDGSVQQVLSVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +T LS AGR+ VL+P K S+ + + + Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVSVSSKIKSGEERAR--LKQLIYSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L + W++ P LV+EE + Sbjct: 181 KPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKTQKQQKRPQLVFEETGRAIAML 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E+ Y E K ++ L+ P A IV+ Y PIF + Q+ S Sbjct: 241 RDLFNPSFENIYVNNEEVYNEVKHYLTLIAPEKASIVKHYTGKVPIFDNFNVTKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 + Y+II TEAL +DVNSG ++ ++ AL NL AA+E+ARQLRLRD Sbjct: 301 GKTINYKHGAYLIIEHTEALHVVDVNSGNRSKSENGQEANALDVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + + C C G G IRS + R + + + +H H V Y+ + Sbjct: 421 NVEETCPTCNGTGKIRSSILFTDQLERKIARLVNKIGIAKFYLHVHPYVAAYINKGFISL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 +++ ++G ++++ +LA + Sbjct: 481 RRKWQLKYGFGVHIIPSQKLAFLQYE 506 >gi|281425614|ref|ZP_06256527.1| ribonuclease, Rne/Rng family [Prevotella oris F0302] gi|281400201|gb|EFB31032.1| ribonuclease, Rne/Rng family [Prevotella oris F0302] Length = 524 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 242/566 (42%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D + E E QA+F Sbjct: 1 MTSEVVIDVRE-KEISIALLEDKNLVEYQNEPR---------------------QASF-S 37 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G I + + L+ N D D H +S Sbjct: 38 VG-----------------NIYAAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 80 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + N ++ + + + +Q+V+ Q + Sbjct: 81 AKYLKQVNSDRKRLYPFSKAQRLPDLK------------------KDGSVQQVLSVGQEV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +T LS AGR+ VL+P K S+ + + + Sbjct: 123 LVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVSVSSKIKSGEERAR--LKQLIYSI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L + W++ P LV+EE + Sbjct: 181 KPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKTQKQQKRPQLVFEETGRAIAML 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E+ Y E K ++ L+ P A IV+ Y PIF + Q+ S Sbjct: 241 RDLFNPSFENIYVNNEEVYNEVKHYLTLIAPEKASIVKHYTGKVPIFDNFNVTKQIKSSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 + Y+II TEAL +DVNSG ++ ++ AL NL AA+E+ARQLRLRD Sbjct: 301 GKTINYKHGAYLIIEHTEALHVVDVNSGNRSKSENGQEANALDVNLGAADELARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 361 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + + C C G G IRS + R ++ + + +H H V Y+ + Sbjct: 421 NVEETCPTCNGTGKIRSSILFTDQLERKIDRLVNKIGIAKFYLHVHPYVAAYINKGFISL 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 +++ ++G ++++ +LA + Sbjct: 481 RRKWQLKYGFGVHIIPSQKLAFLQYE 506 >gi|126642807|ref|YP_001085791.1| ribonuclease G endoribonuclease G [Acinetobacter baumannii ATCC 17978] Length = 432 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 124/412 (30%), Positives = 216/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 19 NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 78 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ I ++ VI+RTA + EI +D YL +LW+ Sbjct: 79 GVSQRIESEEERDR-LRNIIESIQAEHNLPGSVIVRTAAEGVDEAEIAQDMCYLSKLWEY 137 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL ++ ++I V + + + ++F+ +P+ Sbjct: 138 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 197 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 198 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 257 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E + V ++ ++ L++D A+ Sbjct: 258 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 317 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 318 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 377 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 378 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 429 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 54 LQAAFVDYGGNRHGFLPFLEI 74 +QAAFVD G +R FL ++ Sbjct: 1 MQAAFVDIGLSRTAFLHINDM 21 >gi|293192372|ref|ZP_06609483.1| putative S1 RNA binding domain protein [Actinomyces odontolyticus F0309] gi|292820287|gb|EFF79281.1| putative S1 RNA binding domain protein [Actinomyces odontolyticus F0309] Length = 936 Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 152/597 (25%), Positives = 257/597 (43%), Gaps = 45/597 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 289 GEVNWDAVGMEGKPRRIEAALKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPGG 348 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K VP+G GVI+RTA T+ +I+ D L R W+ Sbjct: 349 SMMG-ISRKLPDKERARLKK--ILKAVVPSGSGVIVRTAAEGATEEQIRDDVARLTRQWE 405 Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + +N+ + P L+ E L R +RD++ +D S++++ G Y K+++ L P Sbjct: 406 DIEKKRINTKSAPTLLRGEPELAVRVVRDIFNEDFSKLVIEGRDTYATVKEYVDELSPEL 465 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + V Q+ +F I+ QL +V LPS G +II++TEA+ IDVN+G+ Sbjct: 466 SDRVEQWVGTEDVFRAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKFIGA 525 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++++DF+DM + N V ++L E L +DR Sbjct: 526 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 585 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL------- 504 R QV I++ GL++M+R+R+ ++E+ + C C+G G+I Q V S Sbjct: 586 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSSSCEACEGRGFIVHQHPVETSGAEQPSKGS 645 Query: 505 ------------RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 R +E+ A + + + R +++ Sbjct: 646 KGSKKQQKKAEPRRIEDNADHERAKEALSAIAAASTRKEEEGAAEEPAPTKKRRTRAVST 705 Query: 553 VI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA--------L 603 + E + +P + ++ A + V + Sbjct: 706 EVKDPEASSVEQVAAPEAPADESASKPAAEKAEESATKRPRRRRRVAESTPLPELPVHLD 765 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 LP P S E + E + + RRR + A + Sbjct: 766 LPEPVDHSDEPAAPTKDASEIQLPEHREKAPATRRRASRKAATASSEEPAEAP------- 818 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 P + + + PVS P E ++ +KTR + Sbjct: 819 -----APKKTRRRATAQTAVPEVQTDETPATAPVSAPVAEETSVQEPAAPRKTRRRR 870 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ +L D + E + + GNIYL +V V PS++AAFVD G R+ L E++ Sbjct: 233 QIAILEDGLLVEHYVARRTQSSMVGNIYLGRVQNVLPSMEAAFVDVGRGRNAVLYAGEVN 292 Query: 76 PD 77 D Sbjct: 293 WD 294 >gi|262375787|ref|ZP_06069019.1| ribonuclease G [Acinetobacter lwoffii SH145] gi|262309390|gb|EEY90521.1| ribonuclease G [Acinetobacter lwoffii SH145] Length = 488 Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 127/412 (30%), Positives = 217/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E+++ Q+L VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 75 NDMVWPRNQPTPNVFELLQPGQVLTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ + ++ VI+RTA + I +D YL +LW+ Sbjct: 135 GVSQRIESEEERNR-LRSLIERIQAEHKLPGSVIVRTAAEGIEEEAIAQDMAYLAKLWEY 193 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ P L++EE L +R IRDL ++ ++I V + + + ++F++ +P+ Sbjct: 194 IQRKQKIIAVPSLIFEELPLPQRVIRDLANEETAKIYVDSREIHAKLQEFVEEFVPNMKD 253 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF +E L QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 254 RLLHYPGERPIFDLYNVEEDLQKALQTRVALKSGGYLMIDQTEAMATIDVNTGSYVGGRS 313 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E ++ V K+ + L++D A+ Sbjct: 314 LEDTVFKTNMEATDVIARQLRLRNLGGIIIIDFIDMQEAQHREEVMKQFERMLERDHAKT 373 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 ++ +S GL+EM+R+R R S+ + C C+G GY+++ SV I R + Y Y Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAESVCYEIFREILRYARAY 433 Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + V H V+ LL + + + E I + + + I Sbjct: 434 ESQSGFTVVAHLAVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M++++LI+ + E RV ++ + V EL E K+ + GN+Y KV RV P +QAAFVD Sbjct: 5 MSDELLINVT-PMECRVALIENGTVNELFVERTAKRGLVGNVYKGKVVRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 64 IGLSRTAFLHINDM 77 >gi|304414161|ref|ZP_07395529.1| ribonuclease G [Candidatus Regiella insecticola LSR1] gi|304283375|gb|EFL91771.1| ribonuclease G [Candidatus Regiella insecticola LSR1] Length = 489 Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 135/478 (28%), Positives = 223/478 (46%), Gaps = 10/478 (2%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV------ 149 A A ++ ++ I + V I + I +A D+ + Sbjct: 11 ASETRLAYLEEGVLQEIQIERETKRSIVGNIYQGHVKRVLPGIQAAFIDIGLDKAGFLHA 70 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++K + + I + + Q L+VQ+VK+ G+KGA +T + L RY V+ Sbjct: 71 KEIKPDRMKKNESHHFQSSDITQQVYQGQYLMVQVVKDLLGSKGALLTKDIRLPSRYLVM 130 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MP R + + L +G I+RTA + + ++ D +L Sbjct: 131 MPGVQHVGVSQRIKNEKERER--LKNIVTLSCDQTLGFIIRTAAENICEEKLSADVLFLQ 188 Query: 270 RLWDNVR-ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 RLW +V + N +Y E L R +RD ++ I++ + Y + F Sbjct: 189 RLWQDVLAKKKCNHAKIRQLYAEHPLSSRILRDFAVTELDHILIDSKLTYDQLLAFTDKC 248 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 MP ++ Y P+F + +E ++ +V+L S GY+II+QTEAL ID+N+G Sbjct: 249 MPEIKSKLQHYTASPPLFEKYNVENEIQHSLNRKVSLKSGGYLIIDQTEALTVIDINTGS 308 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 S H +++T TNLEA + IARQLRLR+L G+I++DFIDM K++ SV L+E+L Sbjct: 309 SVGYHNLDETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMRNKQHRESVLTSLQEALS 368 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST-TKVCTYCKGAGYIRSQSSVALSILRSV 507 KDR + + S GL+EM+R+R R S+ + C C+G G ++S +V ILR + Sbjct: 369 KDRVQTTISGFSPLGLVEMTRKRTRESIGQVLLCHDCLTCQGKGRVKSAETVCYEILRKI 428 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 E A+ +V V L +++ + E G SI V I + + F + Sbjct: 429 VEMHRNNDANGFVVSASPSVGEKLQSKEFGALTEIVNFVGKSIKVQINPLYSPENFDV 486 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +LI+ + ETR+ L + ++E+ E E K+ I GNIY V RV P +QAAF+D Sbjct: 1 MTTTLLINIT-ASETRLAYLEEGVLQEIQIERETKRSIVGNIYQGHVKRVLPGIQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G ++ GFL EI PD Sbjct: 60 IGLDKAGFLHAKEIKPD 76 >gi|152995965|ref|YP_001340800.1| ribonuclease [Marinomonas sp. MWYL1] gi|150836889|gb|ABR70865.1| ribonuclease, Rne/Rng family [Marinomonas sp. MWYL1] Length = 484 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 123/398 (30%), Positives = 211/398 (53%), Gaps = 1/398 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I + ++ Q L+VQ+ K+ +KGA +TT+LS+ RY V MP+ + R Sbjct: 84 QIGDYLREGQSLVVQVTKDPISSKGARLTTHLSIPSRYLVYMPDQAHVGVSQRIEDEVER 143 Query: 229 RKNLKEIARGL-EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + ++ L + G ILRTA + EI D ++L RLW +V+ N+ AP + Sbjct: 144 ERLKSLVSEALTDADENSGYILRTAAERAREEEILADIKFLTRLWQSVKRRMQNAKAPSI 203 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YE+ L R +RDL +I + ++ Y + + F + +P + Y PIF Sbjct: 204 IYEDLPLHLRTMRDLVGLTTEKIRIDSKENYAKLRAFAEDFIPELRDRIEYYPGERPIFD 263 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 +E ++ +V L S GY+++ QTE++ +IDVN+G +E+T +TNLEAA Sbjct: 264 LYSVEDEIHKALDRKVQLKSGGYLLVEQTESMTTIDVNTGAFVGSRNLEETIYKTNLEAA 323 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 I RQLRLR+L G+I++DFIDME++++ R V + L++ L D A+ ++ +S GL+EM Sbjct: 324 TAIGRQLRLRNLGGIIIIDFIDMEDEEHKRQVLRMLEKVLDADHAKTKITGVSELGLVEM 383 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ ++ + C C+G+G +++ +V + R + Y + V S V Sbjct: 384 TRKRTRESLGQTLCEPCRSCRGSGLVKTPETVCYEVFREILRADRAYNSQTYTVLAASTV 443 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V L+++ A + E EA G +I + + + Sbjct: 444 VERFLDEESAAVAELEAFIGKTIRFQVDSVYTQDQYDV 481 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +LI+ + E RV ++ + ++E+ E +K I GNIY KV RV P +QAAFVD Sbjct: 1 MSEDVLINVT-PMEIRVALVENGVLQEVYIERSSRKGIVGNIYQGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ E+ Sbjct: 60 IGLERAAFIHVSEV 73 >gi|312126864|ref|YP_003991738.1| ribonuclease, rne/rng family [Caldicellulosiruptor hydrothermalis 108] gi|311776883|gb|ADQ06369.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor hydrothermalis 108] Length = 571 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 140/477 (29%), Positives = 233/477 (48%), Gaps = 14/477 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162 +D ++ I + S V I E + +A N N G Sbjct: 20 EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFS 79 Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+P+T Sbjct: 80 DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPSTEYVGVS 139 Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R + ++ + + P GMG+I+RTA +++ +K + E+L +W +R Sbjct: 140 KRIESEEERQR-----LKEIACRIRPEGMGLIVRTAAEGKSEEVLKSELEFLKNMWKKIR 194 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + + S AP L+Y++ +L+ +A+RD++ + +++ K Y + +F+ PS V Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + IF IE +L V L S GY++I++TEAL IDVN+G+ + + Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+ ++ + V LKE+LK+D+ + V Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 I+ GL+EM+R+++R + C YC+G G I S S+A +L+ +E Y Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSSCPYCEGTGKILSPESIAFKVLKEIEWYCKNKVE 433 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 V ++ V L + I + E ++ I V + F I Sbjct: 434 DKFFVEMNTKVCEILRKGEVDRIKDLEQKYKKKIYVKASSNIHINKFTICPVKDEDH 490 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S +TRV VL D + E+ E E + I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G ++ FL +++ +YY+I Sbjct: 60 IGQEKNAFLYLGDVNRLEFSDTDEYYEI 87 >gi|289771662|ref|ZP_06531040.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289701861|gb|EFD69290.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 1181 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 145/550 (26%), Positives = 249/550 (45%), Gaps = 9/550 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 471 GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 530 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L W+ Sbjct: 531 SMTG-ISRKLPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 587 Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++++ A + S AP L+Y E ++ R +RD++ +D S+++VSG+ ++ ++ + P Sbjct: 588 DIQKKAKSGGSSNAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAP 647 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 A + ++ +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T Sbjct: 648 DLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFT 707 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + +E+T + NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L + Sbjct: 708 GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGR 767 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-QSSVALSILRSVE 508 DR + QV +++ GL++M+R+R+ +LES ++ C +C G G I + Sbjct: 768 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSSAGGGGGKR 827 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 + A H H V + E+ V+ V + L F ++ Sbjct: 828 RKRARAGAEQPHEHEHEAVAGIETGPTPEQEADTESETEVAAEVAEPVALPAPDFSADEE 887 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQDNIVSEESTGV 627 A + + + A K+ES++ + Sbjct: 888 LYSSAAEAEAAATRGRGRRRASRRASAPAGAPRAAKGEAKAESVKAEAAPAGAPTAQDVT 947 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +R+ R RR PA + + + + P+ Sbjct: 948 VREEVERPVRREPAAEVLAEPAAVEDAVSGAPAPAAAAETAAPAPEEAAPKGRTRRRATR 1007 Query: 688 ENYDVSIPPV 697 + + P Sbjct: 1008 KVSAPAGSPE 1017 Score = 93.5 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ H E T++ VL D + E E GN+YL KV V PS++AAF+D G Sbjct: 402 ERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 461 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 462 KGRNAVLYAGEV 473 >gi|317503237|ref|ZP_07961295.1| ribonuclease G [Prevotella salivae DSM 15606] gi|315665650|gb|EFV05259.1| ribonuclease G [Prevotella salivae DSM 15606] Length = 539 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 243/566 (42%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D + E E QA+F Sbjct: 16 MTSEVVIDVRE-KEISIALLEDKNLVEYQNEPR---------------------QASF-S 52 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G I + + L+ N D D H +S Sbjct: 53 VG-----------------NIYAAKVKKLMPGLNACFVDVGYERDAFLHYLDLGSQFNSY 95 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + N ++ + + + +Q+V+ Q + Sbjct: 96 AKYLKQVNSDRKKLYPFSKAQRVPDLK------------------KDGSVQQVLTVGQEV 137 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +T LS AGR+ VL+P K S+ + + + Sbjct: 138 LVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVSVSSKIKSGEERAR--LKQLIYSI 195 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAI 299 P GVI+RT + E+ + + L + W++ P LV+EE + Sbjct: 196 KPKNCGVIVRTVAEGKRVAELDTEMKVLNKRWEDAILKTQKQQKRPQLVFEETGRAIAML 255 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RDL+ I V+ E+ Y E K ++ L+ P A IV+ Y+ PIF + Q+ S Sbjct: 256 RDLFNPSFENIYVNNEEVYNEVKHYLTLIAPEKAGIVKLYKGKVPIFDNFNVTKQIKSSF 315 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRD 418 + Y+II TEAL +DVNSG T+ ++ AL NL AA+EIARQLRLRD Sbjct: 316 GKTINYKHGAYLIIEHTEALHVVDVNSGNRTKAQNGQEANALDVNLGAADEIARQLRLRD 375 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ Sbjct: 376 MGGIIVVDFIDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDV 435 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + + C C G G I+S + R ++ + + +H H V Y+ + Sbjct: 436 NVEETCPTCNGTGKIKSSILFTDQLERKIDRLVNKIGIAKFYLHVHPYVAAYINQGLISL 495 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 +++ ++G ++++ +LA + Sbjct: 496 RRKWQFKYGFGVHIIPSQKLAFLQYE 521 >gi|312876542|ref|ZP_07736525.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor lactoaceticus 6A] gi|311796753|gb|EFR13099.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor lactoaceticus 6A] Length = 571 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 143/477 (29%), Positives = 233/477 (48%), Gaps = 14/477 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162 +D ++ I + S V I E + +A N N G Sbjct: 20 EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79 Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+P+T Sbjct: 80 DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPSTEYVGVS 139 Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R + ++ + + P GMG+I+RTA S+++ +K + E+L +W ++ Sbjct: 140 KRIESEEERQR-----LKEIACRLKPEGMGLIVRTAAESKSEEILKSELEFLKNMWGRIK 194 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + + S AP L+Y++ +L+ +A+RD++ + +++ K Y + +F+ PS V Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIMEFLSSYAPSLKSKV 253 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + IF IE +L V L S GY++I++TEAL IDVN+G+ + + Sbjct: 254 EYFNLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T L+TNLEAA EIARQLRLRD+ G+I++DFIDM+ ++ + V LKE+LK+D+ + V Sbjct: 314 ETILKTNLEAAHEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVV 373 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 I+ GL+EM+R++IR + C YC+G G I S SVA +L+ +E Y Sbjct: 374 VDITPLGLVEMTRKKIRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 V ++ V L + I E E ++ I V + F I Sbjct: 434 DKFFVEMNTKVCEILRKGEIDRIKELEQKYKKKIYVKASSNIHINKFTICPVKDEDH 490 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S +TRV VL D + E+ E E + I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G ++ FL +++ +YY+I Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87 >gi|312880404|ref|ZP_07740204.1| ribonuclease, Rne/Rng family [Aminomonas paucivorans DSM 12260] gi|310783695|gb|EFQ24093.1| ribonuclease, Rne/Rng family [Aminomonas paucivorans DSM 12260] Length = 502 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 127/433 (29%), Positives = 211/433 (48%), Gaps = 10/433 (2%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 +K ++VQ+VK R KGA VT +SLAGRY VL+P + R + Sbjct: 80 RNVKPNAEMIVQVVKSARKGKGARVTPRVSLAGRYLVLVPGGHETGVSKRIADEDERAR- 138 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 P G G+I+RT + + RD E L+ W V E + AP L+Y + Sbjct: 139 -LRGLARSCRPQGYGLIVRTVAEGCDEENLMRDVEELLEQWQEVEENGRRNAAPCLLYRD 197 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 L++R +RD D++EI+V E+ ++++K V Y P+F GI Sbjct: 198 LGLLERVLRDELDGDVTEIVVDNEEERDRVEEWLKHFRDGEPPEVNYYRGNTPLFEIYGI 257 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ L +V L S Y++I+QTEAL IDVN+G+ T + T L TNLEAA+E+A Sbjct: 258 EKEIEGLLDRKVWLHSGAYLVIDQTEALTVIDVNTGKFTGSTDLRHTVLATNLEAADEVA 317 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLR L G++V+DFIDME ++ R++ +L+E +KDR R +V ++ GL+E++R+R Sbjct: 318 RQLRLRALGGIVVIDFIDMETDEDRRALVARLQELFRKDRYRARVYGVTGLGLVEITRKR 377 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 R + ++ C +C G G++ + SVA+ I R + + + ++V + V Y+ Sbjct: 378 ARPDLRSLVSRGCPFCGGLGWVEKEESVAMQIKRFLRKVCQSSRSEALLVEAYPAVARYV 437 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 + ++ FG ++ + F + + D + Sbjct: 438 GE---TYLKAWQEEFGRTLFLR-----EVPEFSWARYRLDSQGSLAQMEHRVDLLERREE 489 Query: 592 KNIECVWQDEALL 604 + + + Sbjct: 490 RAVVHRAAASPRV 502 Score = 95.4 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 3 NKMLIDASHVEETRVVVLRD-NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 K++ + EE RV +L + R+ +L E ++Q G IY A+V V P + AAFV+ Sbjct: 5 KKIVANTVDSEEMRVAILDERGRLYDLYLERMWERQRTGEIYKARVDSVLPGMHAAFVNL 64 Query: 62 GGNRHGFLPFLEIHPD 77 G R+GFL ++ PD Sbjct: 65 GDGRNGFLYLDDV-PD 79 >gi|262368927|ref|ZP_06062256.1| ribonuclease G and E [Acinetobacter johnsonii SH046] gi|262316605|gb|EEY97643.1| ribonuclease G and E [Acinetobacter johnsonii SH046] Length = 484 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 126/412 (30%), Positives = 218/412 (52%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E+++ QIL VQ++K+ G KGA ++T LS+ RY V+MP + Sbjct: 71 NDMVWSRNQPTPNVFELLQPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVMMPYGNHT 130 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 R + + L+ + ++ VI+RTA + I +D YL +LW+ Sbjct: 131 GVSQRIESEAERDR-LRSMIERIQAEHKLPGSVIVRTAADGIAEAAIAQDMAYLAKLWEF 189 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL + ++I V + + + ++F++ +P+ Sbjct: 190 IQRKQISIAVPSLIFEELPLPQRIIRDLASEKTAKISVDSREIHGKLQEFVEEFVPNIKE 249 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y PIF +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 250 RLIHYPGERPIFDLYNVEEDIQRALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 309 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E+++ V + + L++D A+ Sbjct: 310 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEQEHRTEVMTQFERMLEQDHAKT 369 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 ++ +S GL+EM+R+R R S+ + C C+G GY+++ SV I R + Y Y Sbjct: 370 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAESVCYEIFREIMRYTRAY 429 Query: 515 TAHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E G I + + + I Sbjct: 430 QSQTGFTVVAHPSVIDRLLTAEAPAVADLEHFIGRVIKFQVENLYTQEQYDI 481 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M++++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 1 MSDELLINVT-PMECRVALIENGTVNELFIERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 60 IGLSRTAFLHINDM 73 >gi|260592147|ref|ZP_05857605.1| ribonuclease, Rne/Rng family [Prevotella veroralis F0319] gi|260535781|gb|EEX18398.1| ribonuclease, Rne/Rng family [Prevotella veroralis F0319] Length = 523 Score = 241 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 123/423 (29%), Positives = 207/423 (48%), Gaps = 3/423 (0%) Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 V S+ + + + ++ IQ ++ Q +LVQIVKE KG +T +S Sbjct: 85 KQVQSDRKKLYPIQKANHLPDIQKDGTIQNALQVGQEVLVQIVKEPISTKGPRLTGEISF 144 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRY VL+P K S+ + + + P GVI+RT + E+ Sbjct: 145 AGRYLVLIPFGHKVSVSSKIKSGEERAR--LKQLIQSITPKNFGVIVRTVAEGKRVAELD 202 Query: 263 RDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + + L+ W+ + P LV+EE +RDL+ I V+ + Sbjct: 203 AEMKVLLNRWNEAITKVQKTQERPQLVFEETGRAVAMLRDLFNPTYENIYVNDDDICTAV 262 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + ++ L+ P A IV++Y PIF + Q+ S + Y+II TEA+ Sbjct: 263 RHYVSLIAPEKASIVKKYNGKVPIFDNFDVTKQIKSSFGKTINYGHGCYLIIEHTEAMHV 322 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSG T+E E AL TNL AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + + Sbjct: 323 VDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYE 382 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++ ++++KDRAR + +S FGL++++RQR+R + + C C G G I S Sbjct: 383 RMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDENCPTCFGTGKIHSSILFTD 442 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + R ++ + + +H H V Y+ + +++ R+G+ +N++ +LA Sbjct: 443 QLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGFISLKRKWQMRYGLGVNIIPSQKLAYL 502 Query: 562 LFY 564 + Sbjct: 503 QYE 505 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D R+ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVIIDV-QQKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G R FL +L++ Y + SDR+ L Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKL 94 >gi|238021426|ref|ZP_04601852.1| hypothetical protein GCWU000324_01326 [Kingella oralis ATCC 51147] gi|237868406|gb|EEP69412.1| hypothetical protein GCWU000324_01326 [Kingella oralis ATCC 51147] Length = 498 Score = 241 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 111/406 (27%), Positives = 207/406 (50%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 + + I+ V+ Q LLVQ++K+ +KGA ++T +SLAGR+ V +P Sbjct: 90 QRQNPESNQRIEHVLFEGQTLLVQVIKDPINSKGARLSTQISLAGRFLVHLPQDEHIGIS 149 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + L A G I+RT+ + + E++ D +YL ++W N++ A Sbjct: 150 QRIDNEFDRHTLRERLNALLPETACHGYIIRTSAENASDAELQADIDYLTKVWGNIQHQA 209 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+YE+ L +R +RD++ + EI+V + + K F + + ++++ Sbjct: 210 KVLPPESLLYEDLPLAQRVLRDMFNNNTHEILVDSRQNFARMKHFAEQYVQGAVEKLQRF 269 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + P+F G+E +++ Q V L Y+II TEA+ +IDVN+G ++T Sbjct: 270 QGERPLFETFGVEAEINRALQPRVNLNFGSYLIIETTEAMTTIDVNTGGFVGARNFDETI 329 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEA IAR+LRLR+L G+I++DFIDM +++ +V ++L ++L DR RV + Sbjct: 330 FKTNLEACHAIARELRLRNLGGIIIIDFIDMMLEEHREAVLQELAKALSFDRTRVTLNGF 389 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 + GL+E++R+R R S+ + C C+G G +++ S+ I R + ++ A Sbjct: 390 TRLGLVELTRKRSRESLKHILCEPCPTCQGKGSLKTAQSLCYEIQREIVRESRRFDAREF 449 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V+ L+++ ++ G I++ + + + I Sbjct: 450 RIIASPKVIDMFLDEESQSLAMLIDFIGKPISLSVETAYTQEQYDI 495 >gi|50084043|ref|YP_045553.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter sp. ADP1] gi|49530019|emb|CAG67731.1| ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) [Acinetobacter sp. ADP1] Length = 488 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 127/411 (30%), Positives = 216/411 (52%), Gaps = 2/411 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ QIL VQ++K+ G KGA ++T LS+ RY V+MP Sbjct: 75 NDMVWPRSQPTPNVYELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVMMPYGHHI 134 Query: 217 ETISRKITNPVDRKNLKEIAR-GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R + I R +E VI+RTA + I++D YL +LW+ + Sbjct: 135 GVSQRIEAEEERERLRGIIERIQVEHKLPGSVIVRTAAEGIDEASIEQDMCYLAKLWEFI 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + ++ P L++EE L +R IRDL +D+++I V + + + K+F+ +P+ Sbjct: 195 QRKEKQAIVPSLIFEELPLPQRVIRDLASEDMTKIYVDSREIHAKLKEFIDEFVPNIQNR 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G + Sbjct: 255 LIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRTL 314 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E + V K+ ++ L++D A+ + Sbjct: 315 EDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEATHREEVMKQFQKMLERDHAKTK 374 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 + +S GL+EM+R+R R S+ + C C+G GY+++ +V I R + Y + Sbjct: 375 ITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCYEIFREILRYTRAFE 434 Query: 516 AHN-IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + V H V+ LL + + + E I + + + I Sbjct: 435 SQSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M++++LI+ + E RV ++++ V EL E K+ + GNIY+ KV RV P +QAAFVD Sbjct: 5 MSDELLINVT-PMECRVALIQNGTVNELFVERTVKRGLVGNIYMGKVVRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 64 IGLSRTAFLHINDM 77 >gi|237712331|ref|ZP_04542812.1| ribonuclease G [Bacteroides sp. 9_1_42FAA] gi|229453652|gb|EEO59373.1| ribonuclease G [Bacteroides sp. 9_1_42FAA] Length = 524 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ + ++ Q ++VQIVKE KG +T LS AGRY VL+P K + ++ Sbjct: 108 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W+ + Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E + E KD++ L+ P A IV+ Y+ P Sbjct: 226 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF GI Q+ S ++ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 286 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + ++ Sbjct: 406 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H + Y+ + +++ ++G I ++ LA + + + Sbjct: 466 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDIQGEEIDMKEE 520 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + E E GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 94 >gi|150006583|ref|YP_001301327.1| ribonuclease G [Bacteroides vulgatus ATCC 8482] gi|237726467|ref|ZP_04556948.1| ribonuclease G [Bacteroides sp. D4] gi|265752042|ref|ZP_06087835.1| ribonuclease G [Bacteroides sp. 3_1_33FAA] gi|319642900|ref|ZP_07997536.1| ribonuclease G [Bacteroides sp. 3_1_40A] gi|149935007|gb|ABR41705.1| ribonuclease G [Bacteroides vulgatus ATCC 8482] gi|229434993|gb|EEO45070.1| ribonuclease G [Bacteroides dorei 5_1_36/D4] gi|263236834|gb|EEZ22304.1| ribonuclease G [Bacteroides sp. 3_1_33FAA] gi|317385448|gb|EFV66391.1| ribonuclease G [Bacteroides sp. 3_1_40A] Length = 524 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ + ++ Q ++VQIVKE KG +T LS AGRY VL+P K + ++ Sbjct: 108 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W+ + Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E + E KD++ L+ P A IV+ Y+ P Sbjct: 226 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF GI Q+ S ++ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 286 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + ++ Sbjct: 406 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H + Y+ + +++ ++G I ++ LA + + + Sbjct: 466 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDVHGEEIDMKEE 520 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + E E GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 94 >gi|157373702|ref|YP_001472302.1| ribonuclease G [Shewanella sediminis HAW-EB3] gi|157316076|gb|ABV35174.1| ribonuclease, Rne/Rng family [Shewanella sediminis HAW-EB3] Length = 500 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 121/396 (30%), Positives = 196/396 (49%), Gaps = 3/396 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP +S R + Sbjct: 105 INELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRI--ESEEV 162 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 ++ + V G I+RTA S + E+ +D +L R+W V E L+Y Sbjct: 163 RSRLKGLTEPFVDEDGGFIIRTAAESAGEQELVQDAAFLRRVWGRVSERR-KLKGVSLLY 221 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 ++ L R +RD ++ +I V + + E + F + MP A + Y P PIF Sbjct: 222 QDLALPVRIVRDFVGTELDQIQVDSSQTFEELQAFSEEFMPEIAEKIEHYNGPVPIFDLY 281 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E ++ +V L S GY+II+QTEA+ ++D+N+G +E+T TNLEA + Sbjct: 282 DVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 341 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM ++ + V L+ +L DR + + S GL+EM+R Sbjct: 342 IARQLRLRNLGGIIIIDFIDMLRSEHQKRVLASLELALSADRVKTNISGFSGLGLVEMTR 401 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R R S+ C C G G +++ +V+ I R + Y A +V+ V Sbjct: 402 KRTRESIEHVLCGECPACYGTGSLKTVETVSYEIFREIIRLDRSYDADEFLVYCAPGVFN 461 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L ++ + E G + A F + Sbjct: 462 SLTGEEGHLVAELGVYIGKRVRFQNEPMYAQNKFDV 497 >gi|126176009|ref|YP_001052158.1| ribonuclease G [Shewanella baltica OS155] gi|125999214|gb|ABN63289.1| RNAse G [Shewanella baltica OS155] Length = 502 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 194/413 (46%), Gaps = 3/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 DV K I E+++ Q ++VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 90 HTECVADVEKGHFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 149 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +S R + + V G I+RTA + E+ +D +L R+W Sbjct: 150 SSHVGVSQRIELEEERSR--LKQITLPYVDDDGGFIIRTAAEGVGEDELSQDAAFLRRVW 207 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E L+Y++ L R +RD ++ I V + + E + F + MP Sbjct: 208 SKVSERR-KRSGVSLLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQSFAQEFMPEI 266 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 A + Y P PIF +E ++ +V L S GY+II+QTEA+ ++D+N+G Sbjct: 267 AEKIEHYSGPAPIFDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 326 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T TNLEA + IARQLRLR+L G+I++DFIDM + V L +L KDR Sbjct: 327 RNLEETIFNTNLEATQAIARQLRLRNLGGIIIIDFIDMMTADHKARVLSSLTSALSKDRV 386 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V S GL+EM+R+R R S+ C C G G +++ +V+ + R + Sbjct: 387 KTNVSGFSGLGLVEMTRKRTRESLEHVVCGECPACHGTGSMKTVETVSYEVFREIIRLNR 446 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A +++ V L + I E E G I + + + + Sbjct: 447 AYDADEFLLYCSPAVYQSLHTDENHLIAELEVYIGKRIRLQNEPMYSQHKYDV 499 >gi|220915849|ref|YP_002491153.1| ribonuclease, Rne/Rng family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953703|gb|ACL64087.1| ribonuclease, Rne/Rng family [Anaeromyxobacter dehalogenans 2CP-1] Length = 844 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 141/528 (26%), Positives = 240/528 (45%), Gaps = 9/528 (1%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 K+ K IQ+++K Q ++VQ+ K+ G KGA +T+++SL GR+ V MP Sbjct: 321 EEKRTKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGIS 380 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + R+ P G G I+RT + +++ D +L+++W+ + Sbjct: 381 RRIEKDGERRR--LREIVDRMRPEGTGFIVRTVAENVEAAKLEADIRFLIQVWNEIIRTK 438 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 AP L++ + +LI RA RDL+ ++ ++++ Y F+ P + Y Sbjct: 439 DKVSAPALLHGDLDLILRATRDLFTAEVGKLVIDDRDEYERILRFVHDQAPHLESQIESY 498 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + PIF GIE +L Q +V L S GY+I++Q EAL +IDVNSGR + +E+T Sbjct: 499 QGQEPIFDAYGIEQELKRAAQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETI 558 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 + N+EAA+EI QLRLR++ G+I++DFIDM++ +N V K L+++L +D+A+ V I Sbjct: 559 TKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKI 618 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R+R SV + C YC G G+++S+ ++A I R + + + Sbjct: 619 SELGLVEMTRKRVRESVTRVMNEPCPYCDGRGHVKSKITIAYEIFREIRREAPHFPEPVL 678 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALV 575 +V++H +V L +R + RF +I V + F I E+ Sbjct: 679 VVNSHPEVARILQGAEREELRYLMDRFNKTIQVKPQSGYHQEQFDIYGRQERAEQGGGGG 738 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 G GS + + + ++ + R R R Sbjct: 739 GGGSGGGSGGGGGGSGGGGGGGRDRDRGRGRDRRGGRGGERGGERNDRNERGERGERGER 798 Query: 636 RRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 R +D + G + + E Sbjct: 799 NDRGGERSDRGERG--QREERGDRGGERPEGGEPRAAPEAPAQGGEKA 844 Score = 118 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I+A+ ETRV ++ + + E E + +K I GNIY +V RV P +QAAFVD G Sbjct: 7 LVINAAGA-ETRVALVENGTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLE 65 Query: 65 RHGFLPFLEIHPD 77 + FL +++ D Sbjct: 66 KAAFLYVGDVYGD 78 >gi|117927963|ref|YP_872514.1| ribonuclease G [Acidothermus cellulolyticus 11B] gi|117648426|gb|ABK52528.1| RNAse G [Acidothermus cellulolyticus 11B] Length = 702 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 122/362 (33%), Positives = 200/362 (55%), Gaps = 6/362 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I+ +K Q ++VQ+ K+ G+KGA +T+ +SL GR+ V +P S ISRK+ + Sbjct: 324 QPQRIEAALKPGQTVVVQVTKDPIGHKGARLTSQISLPGRFLVFVPEGSMMG-ISRKLPD 382 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + +P G GVI+RTA ++ E+ RD LM W+++++ A + AP Sbjct: 383 TERNR--LKAILRKIMPEGAGVIVRTAAEGASEEELARDIARLMAQWEDIQKKAESGTAP 440 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L R +RD++ +D ++++V G+ + + ++ + P + + + Sbjct: 441 ALLYAEPDLTIRVVRDIFNEDFAQLVVQGDSEWDMVEAYVAHVAPDLLPRISHWTSDEDV 500 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNL 404 F I+ QL V LPS GY+II++TEA+V IDVN+GR + +E+T +TNL Sbjct: 501 FAHYRIDEQLAKALDRRVWLPSGGYLIIDRTEAMVVIDVNTGRFVGKGGNLEETVTKTNL 560 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR + QV +++ GL Sbjct: 561 EAAEEIVRQLRLRDIGGIIVIDFIDMLLESNRELVLRRLVECLGRDRTKHQVAEVTSLGL 620 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++M+R+R+ S +LE+ ++ C C G G I V R + Sbjct: 621 VQMTRKRVGSGLLEAFSEPCEVCGGRGVIIHTDPVTAQ--RRAHRGRARTRQEAEPSAEP 678 Query: 525 SD 526 Sbjct: 679 VA 680 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + +I GN+YL +V V P ++AAFVD G R+ L E+ Sbjct: 255 TQIGVLEDGILVEHYVSTTSANRIVGNVYLGRVQNVLPGMEAAFVDIGKGRNAVLYAGEV 314 Query: 75 HPD 77 + D Sbjct: 315 NFD 317 >gi|227539324|ref|ZP_03969373.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33300] gi|300774177|ref|ZP_07084045.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33861] gi|227241006|gb|EEI91021.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33300] gi|300758988|gb|EFK55816.1| ribonuclease G [Sphingobacterium spiritivorum ATCC 33861] Length = 517 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 144/575 (25%), Positives = 254/575 (44%), Gaps = 60/575 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++ID++ + + +L+D ++ EL K+ N + Sbjct: 1 MVKELIIDSTPDKGVTIALLQDKQLVEL------NKEQANN------------------N 36 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 + +I+ L + I + A D D + Sbjct: 37 F--------SVGDIY-------------LGRIKKIMPGLNAAFVDVGYEKDAFLHYLDLG 75 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +V + ++ + S + + +D+ + I +++ +L Sbjct: 76 PQVQSLLKLTRIVKNGSYQEKLLNSLKLEKDID------------KAGKISDILSRNLLL 123 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 VQI KE KG +++ LS+AGR+ VL+P +S +IS++I +R LK++ G++ Sbjct: 124 PVQIAKEPISTKGPRLSSDLSIAGRFVVLVPFSS-TVSISKRIKGSAERTRLKKVVEGIK 182 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 GVI+RT + E+++D L+ W+ + + P V E + +R Sbjct: 183 PA-NFGVIIRTVSEGKGVEELQKDLLDLISKWELFTKRLRTAEPPQKVLGEMDRASTILR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + + I V+ Y E K +++ + P +IV+ Y+ PIF G+E Q+ + Sbjct: 242 DILTDEFTHIYVNDPVIYEETKSYVQEISPDLEKIVKLYKHKEPIFDHFGVEKQIKASFG 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419 V L Y++I TEAL +DVNSG T ED AL N EAA EIARQLRLRD+ Sbjct: 302 KTVNLQGGAYLVIEHTEALHVVDVNSGNRTANKENQEDNALLVNKEAAREIARQLRLRDM 361 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G++V+DFIDM + N + + L+E ++ DRAR + S FGL++++RQR+R + Sbjct: 362 GGIVVIDFIDMHKPTNRKELFTYLRECMQADRARHTILPPSKFGLVQITRQRVRPEMSVV 421 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + C C G G IRS + I ++ L + I + H + Y+ + + Sbjct: 422 TNEKCPTCNGTGEIRSSIVLMDDIESNLSFILQEQNDKGITLCVHPYIEAYIKSGFVSKR 481 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +++ +FG I V + F+ + Sbjct: 482 IKWFMKFGRWIKVKAVSSYSLTEFHFFNAKDEEIK 516 >gi|87120469|ref|ZP_01076363.1| ribonuclease G [Marinomonas sp. MED121] gi|86164112|gb|EAQ65383.1| ribonuclease G [Marinomonas sp. MED121] Length = 484 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 124/398 (31%), Positives = 214/398 (53%), Gaps = 1/398 (0%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I + ++ Q L+VQ+ K+ +KGA +TT+LS+ RY V MP+ S R Sbjct: 84 QIGDYLREGQSLVVQVTKDPISSKGARLTTHLSIPSRYLVYMPDQSHVGVSQRIEDEGER 143 Query: 229 RKNLKEIARGLEVPAGM-GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + + +++ L G ILRTA + EI+ D ++L RLW +V++ ++ AP + Sbjct: 144 ERLKQLVSQALTQADETSGYILRTAAEGAGEDEIQADIKFLTRLWQSVKKRITSAKAPSV 203 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YE+ L R +RDL +I + + Y + K F + +P + V Y PIF Sbjct: 204 IYEDLPLHLRTMRDLVSLKTEKIRIDSRENYAKLKAFAEEFIPEVGQRVEYYPGERPIFD 263 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 +E ++ +V L S GY+++ QTE++ +IDVN+G +E+T +TNLEAA Sbjct: 264 IYSVEDEIQKALDRKVQLKSGGYLLVEQTESMTTIDVNTGAFVGSRNLEETIYKTNLEAA 323 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 I RQLRLR+L G+I++DFIDME++++ R V + L++ L D A+ ++ +S GL+EM Sbjct: 324 TAIGRQLRLRNLGGIIIIDFIDMEDEEHKRQVLRMLEKVLDLDHAKTKITGVSELGLVEM 383 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R R S+ ++ + C C+G+G +++ +V + R + Y + V V Sbjct: 384 TRKRTRESLGQTLCEPCRACRGSGLVKTPETVCYEVFREILRADRAYDSPTYAVLASRAV 443 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + ++ A++ E EA G SI+ I + + Sbjct: 444 IDRMHEEESASVAELEAFIGKSIHFQIETMYTQDQYDV 481 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +LI+ + E RV ++ + ++E+ E +K I GNIY KV RV P +QAAFVD Sbjct: 1 MSEDVLINVT-PMEIRVALVENGVLQEVYIERSTRKGIVGNIYQGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G R F+ E+ Sbjct: 60 IGLERAAFIHVSEV 73 >gi|212550695|ref|YP_002309012.1| ribonuclease G [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548933|dbj|BAG83601.1| ribonuclease G [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 518 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 118/567 (20%), Positives = 209/567 (36%), Gaps = 63/567 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID + + VL D + E E GNIYL +V ++ P L AAFVD Sbjct: 1 MISELVIDV-QPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 GG + FL + ++ V P L Sbjct: 60 IGGEKGAFLHYRDLG-------------------GNINSLNTFLKKVFSEKRIPPIGKFL 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A +A T+ + G + I +R + Sbjct: 101 CSSAEVAKDISITDILKQGDNVLVQIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRVSI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 ++I ++ + + + ++ + + + K + L Sbjct: 161 SLKIQSDKERIRLKQLVCSIKPKNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLI 220 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +I R ++ +F+ E N Sbjct: 221 NSKSPSLIY--EETGRVLALLRDNFDSSFEHIYINDENMFN------------------- 259 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 E +D++ L+ P + IV+ Y+ PIF I QL S Sbjct: 260 -------------------EVRDYLSLIDPQKSNIVKLYKGEFPIFDNFVITKQLKSKFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRS---TREHCIEDTALQTNLEAAEEIARQLRLR 417 +TL + Y++I TEA+ IDVNSG T ED + N+ AAEEIA+QLRLR Sbjct: 301 KIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQLRLR 360 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 D+ G+IV+DFIDM E+ N + + + + KDRA+ V +S GL+E++R+RIR ++ Sbjct: 361 DMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRPALD 420 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 + + C+ G G I+ + ++ + + +H H V ++ + Sbjct: 421 FNAMETCSVPLGKGTIKPSIFFTDMLDEKIKIVVKKMGVKEFSLHIHPYVAAFVKKGFFS 480 Query: 538 TIVEYEARFGVSINVVIGIELADKLFY 564 ++++ ++ V I ++ L + Sbjct: 481 LNMKWKIKYSVGIRIIPDQSLEILGYK 507 >gi|333030021|ref|ZP_08458082.1| ribonuclease, Rne/Rng family [Bacteroides coprosuis DSM 18011] gi|332740618|gb|EGJ71100.1| ribonuclease, Rne/Rng family [Bacteroides coprosuis DSM 18011] Length = 525 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 117/564 (20%), Positives = 223/564 (39%), Gaps = 60/564 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL +V ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSLALLEDKSLVELQSEGVNISFSVGNMYLGRVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL +L++ P + + +Q L + + D+ D S+ Sbjct: 60 VGYEKDAFLHYLDLGPQFNSLGKYVKQTLSNRKKLPPMSKANMLPDID-------KDGSI 112 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +V + + IS +++ G +P K + + Sbjct: 113 SDVLKVGQEVVVQIAKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSKERAR 172 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L Q+++ + I R + L + L Sbjct: 173 LKQLLRSIKP-----------------------KNFGVIVRTVAEDKRVAELDAELKLLL 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 I + A++ I + + L ++ + ++ + + Sbjct: 210 KRWDES-IKKVQRATKFPTLIFEETSRAVALLRDLFNPSFKNIYINDEVVYNEIRDYVKL 268 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 K+ G+ + D K + S+ + V Sbjct: 269 IAPDKENIVKRYKGQLPIFDNFDITKQIKSSFGKTVSYKR-------------------- 308 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419 Y+II TEAL +DVNSG T+ ++ A++ NL AA+EIARQLRLRD+ Sbjct: 309 -------GAYLIIEHTEALHVVDVNSGNRTKNANGQEANAVEVNLGAADEIARQLRLRDM 361 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IV+DFIDM E N + + +++ +++KDRAR + +S FGL++++RQR+R ++ + Sbjct: 362 GGIIVIDFIDMNESANRQKIYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVN 421 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + C C G G I+S ++ ++ + + +H H V Y+ + Sbjct: 422 TLETCPTCFGKGSIKSSILFTDTLENKIDYLVHKLKKKRFSLHVHPYVAAYINQGVISLK 481 Query: 540 VEYEARFGVSINVVIGIELADKLF 563 ++ ++G I ++ +LA + Sbjct: 482 RRWQMKYGFGIKIIPSQKLAFLEY 505 >gi|256787779|ref|ZP_05526210.1| hypothetical protein SlivT_25102 [Streptomyces lividans TK24] Length = 1042 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 145/550 (26%), Positives = 249/550 (45%), Gaps = 9/550 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 332 GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 391 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L W+ Sbjct: 392 SMTG-ISRKLPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 448 Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++++ A + S AP L+Y E ++ R +RD++ +D S+++VSG+ ++ ++ + P Sbjct: 449 DIQKKAKSGGSSNAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAP 508 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 A + ++ +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T Sbjct: 509 DLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFT 568 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + +E+T + NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L + Sbjct: 569 GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGR 628 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-QSSVALSILRSVE 508 DR + QV +++ GL++M+R+R+ +LES ++ C +C G G I + Sbjct: 629 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSSAGGGGGKR 688 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 + A H H V + E+ V+ V + L F ++ Sbjct: 689 RKRARAGAEQPHEHEHEAVAGIETGPTPEQEADTESETEVAAEVAEPVALPAPDFSADEE 748 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQDNIVSEESTGV 627 A + + + A K+ES++ + Sbjct: 749 LYSSAAEAEAAATRGRGRRRASRRASAPAGAPRAAKGEAKAESVKAEAAPAGAPTAQDVT 808 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +R+ R RR PA + + + + P+ Sbjct: 809 VREEVERPVRREPAAEVLAEPAAVEDAVSGAPAPAAAAETAAPAPEEAAPKGRTRRRATR 868 Query: 688 ENYDVSIPPV 697 + + P Sbjct: 869 KVSAPAGSPE 878 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ H E T++ VL D + E E GN+YL KV V PS++AAF+D G Sbjct: 263 ERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 322 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 323 KGRNAVLYAGEV 334 >gi|145588796|ref|YP_001155393.1| ribonuclease [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047202|gb|ABP33829.1| RNAse G [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 487 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 129/406 (31%), Positives = 217/406 (53%), Gaps = 7/406 (1%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS------KGETIS 220 Q I++++ Q LLVQ++K+ G KGA +TT LS+AGR V +P K +S Sbjct: 79 QPQIEKLLFEGQSLLVQVLKDPLGTKGARLTTQLSIAGRNLVYLPPAGTDVATEKYIGVS 138 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVIL-RTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 ++I P +R+ +K L G I+ RT+ + E++ D YL W+N+R+ Sbjct: 139 QRIDKPEEREAIKARLASLMAEDEKGGIIVRTSAQDASDTELQHDMHYLRTTWENIRDAM 198 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 + AP L+Y++ +L +R +RD+ +D S+I V + + + K F L MP+ + + Sbjct: 199 KSKAAPSLLYQDLSLAERVLRDVAGEDTSQIRVDSAENFEKLKGFANLYMPNLLSKLTLH 258 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 +F ++ +++ V L S GY++I+QTE++ +IDVN+G ++DT Sbjct: 259 RGERALFDLFDVDAEINKALGRRVDLKSGGYLMIDQTESMTTIDVNTGSYVGARNLDDTV 318 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +TNLEAA+ IARQLRLR+L G+I++DFIDM + + SV +LK +L++D AR V Sbjct: 319 FKTNLEAAQAIARQLRLRNLGGIIIIDFIDMIGRDHQESVLYELKRNLERDHARTSVSEF 378 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S GL+EM+R+R R S+ T + C C+G G I++ ++ ILR + Q+ Sbjct: 379 SALGLVEMTRKRTRESLAHITCEPCATCQGKGEIKTAQTICYEILREIVREHRQFNPREF 438 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + DV+ L ++ + + G I + + + I Sbjct: 439 RIVAAPDVIDLFLEEENQFLAQLGDFIGKPITLQAEGSFRQEQYDI 484 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 6/93 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI+ + +ETRV +++ V+EL E ++ I GNIYLAKV RV P +Q+AF++ Sbjct: 1 MNEEILINIT-PQETRVALIQQGAVQELQIERTRQRGIVGNIYLAKVVRVLPGMQSAFIE 59 Query: 61 YGGNRHGFLPFLEI-HPDYYQIPFSDRQALLKE 92 G R F+ +I + P + LL E Sbjct: 60 VGLERTAFMHVADITQSN----PQPQIEKLLFE 88 >gi|297182000|gb|ADI18175.1| ribonucleases g and e [uncultured delta proteobacterium HF0200_39N20] Length = 489 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 127/413 (30%), Positives = 229/413 (55%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + P++ + I ++I+ Q +LVQ+ K G KGA +T ++S+ GR V +P Sbjct: 76 ENEILGKTPRENGEKKEIGQLIQEGQDVLVQVSKGPIGTKGARITNHVSIPGRNLVYLPT 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 T + + + + P G I+RT T+ ++ D YL+ +W Sbjct: 136 TQTLGVS--RQISMERERERLKEIVDRLRPENSGFIIRTVAEGHTEEDLHSDINYLVSIW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 +++ E + AP L++ + N++ R IRD++ D+ +++V + +++ + F++ +P Y Sbjct: 194 NDILEKFRSLPAPSLLHSDLNIVFRTIRDIFSSDVKKLVVDDKTQFQKIRQFVRSYLPRY 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + ++ Y P P+F IE ++D +V L S G+++I+QTEAL S+DVN+GR + Sbjct: 254 SSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRSGGHLVIDQTEALTSVDVNTGRFVGK 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 E+T +TN+EAAEEI QL+LR++ G+I++DFIDME +++ + V + LK+ L+ D+A Sbjct: 314 ESHENTIYRTNIEAAEEIVYQLQLRNIGGIIIIDFIDMESQQHRQMVYQTLKDQLRTDKA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R ++ IS GL+EM+R+R R ++ C YC G G I+S S+V+ + R + Sbjct: 374 RSKILQISEMGLVEMTRKRDRENLNRYLCDPCPYCDGTGQIKSASTVSYEVFREIRRSCR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Q T +I + HSDV Y+ +++ + E G +I + +L + F + Sbjct: 434 QNTKGSITLFLHSDVHRYIQQEEQEAVESLEEEMGRTITFKVSDDLHHEQFEL 486 Score = 110 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 60/482 (12%), Positives = 132/482 (27%), Gaps = 45/482 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I+ + ETRV V+ + EL E E ++ NIY KV V P +++AFVD Sbjct: 1 MTKEIIINHT-SHETRVAVMEAGLLTELHHEREKVMRVVDNIYKGKVLNVLPGMESAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R F +I P+ +L ++ + + + + G + Sbjct: 60 IGEERAAFFHIDDILPE---------NEILGKTPRENGEKKEIGQLIQEGQDVLVQVSKG 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + + S E ++ + + + Sbjct: 111 PIGTKGARITNHVSIPGRNLVYLPTTQTLGVSRQISMERERERL--KEIVDRLRPENSGF 168 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN---------TSKGETISRKITNPVDRKN 231 +++ V E + ++ +L S + R I + Sbjct: 169 IIRTVAEGHTEEDLHSDINYLVSIWNDILEKFRSLPAPSLLHSDLNIVFRTIRDIFSSDV 228 Query: 232 LKEIARGLEVPAGMGVILRTA--------GASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 K + + +R+ + + + + Sbjct: 229 KKLVVDDKTQFQKIRQFVRSYLPRYSSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRS 288 Query: 284 --------APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 L + N + ++ + I + + + Sbjct: 289 GGHLVIDQTEALTSVDVNTGRFVGKESHENTIYRTNIEAAEEIVYQLQLRNIGGIIIIDF 348 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT-----EALVSIDVNSGRST 390 + H ++ QL + L ++ T E L + Sbjct: 349 IDMESQQHRQMVYQTLKDQLRTDKARSKILQISEMGLVEMTRKRDRENLNRYLCDPCPYC 408 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIV---VDFIDMEEKKNNRSVEKKLKESL 447 +A + E EI R R + + D +++ +VE +E Sbjct: 409 DGTGQIKSASTVSYEVFREIRRSCRQNTKGSITLFLHSDVHRYIQQEEQEAVESLEEEMG 468 Query: 448 KK 449 + Sbjct: 469 RT 470 >gi|255659274|ref|ZP_05404683.1| ribonuclease G [Mitsuokella multacida DSM 20544] gi|260848731|gb|EEX68738.1| ribonuclease G [Mitsuokella multacida DSM 20544] Length = 480 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 127/407 (31%), Positives = 203/407 (49%), Gaps = 6/407 (1%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 P + I Q L +QIVK+ G KG T ++SL GR VLMP + Sbjct: 74 PHETIESMPQNARIHIGQSLPIQIVKDAIGTKGPRATMHISLPGRNVVLMPTAAYIGMSR 133 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 R + P GMG+I+RT A +++ + D YL+RLW+++ Sbjct: 134 RIEDEGERAR--LHAIAERICPKGMGLIIRTVAAGQSEQSLAADVRYLVRLWESILARYK 191 Query: 281 NS-VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 L+Y + +LI R +RD + DI E+++ E+ Y+ + ++ P +R Y Sbjct: 192 MRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEEAYQRVRSLVEANSPELVDRIRFY 251 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 E PIF IE +++ L EV L S G+++I++TEAL IDVN+G+ + + DT Sbjct: 252 EAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDKTEALTVIDVNTGKYVGKTNLGDTV 311 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 QTNLEAA EI +Q+RLRD+ G+I+VDFIDME++ + ++E +K DR + + I Sbjct: 312 YQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQKEELLTYMREQVKHDRTKTNIVDI 371 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN- 518 ++ GL+E++R++ R ++ C C G G I S +VA+ I R + + A Sbjct: 372 TSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIESPETVAIRISRDIRRMERKSHAREG 431 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + H V L ++ A FG I V + + + + I Sbjct: 432 YEIEVHETVAEELRAN--QLMMNLAAEFGTDIKVTVKPGMHPENYTI 476 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 36/68 (52%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 +I EET + +L D ++ ++ E + GNIY +V V P +QAAFVD G + Sbjct: 4 IIVNMVPEETCMALLEDGELQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDIGTGK 63 Query: 66 HGFLPFLE 73 + FL + Sbjct: 64 NAFLYIGD 71 >gi|167470019|ref|ZP_02334723.1| ribonuclease E [Yersinia pestis FV-1] Length = 990 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 128/392 (32%), Positives = 205/392 (52%), Gaps = 7/392 (1%) Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P ++ ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+ Sbjct: 19 PDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARA 78 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 TR IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +L++++++ Sbjct: 79 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQ 138 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DRAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE Sbjct: 139 DRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 198 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKG 568 L+ H + + YLLN+KR ++ E R GV +V ++ + + + Sbjct: 199 EALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPHYSVLRV 258 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + +A E + + P + + + + EE+ V Sbjct: 259 RKGEEVPSLSYLLPQLHEAEMAQPLEEATIERK--RPEQPALATFSLPTEVPPEEAPTVA 316 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLE---NGAH 684 + + +TD G S + S ++N+ S + ++P+++ + E N Sbjct: 317 KAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRRNDRR 376 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E ++SS + Sbjct: 377 NPRRQNNGRKERNDRTPREGRDNSSRDNTNRD 408 >gi|224026369|ref|ZP_03644735.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM 18228] gi|224019605|gb|EEF77603.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM 18228] Length = 524 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 125/415 (30%), Positives = 207/415 (49%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I V++ Q ++VQIVKE KG +T LS AGRY VL+P K + +N Sbjct: 108 KDGSISNVLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSN 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W+ + Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKATKL 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E Y E KD++ L+ P IV+ Y+ P Sbjct: 226 PSLVYEETSRTVAMLRDLFNPSYENIYVNDEAVYNEVKDYVALIAPERVNIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF I Q+ S ++ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 286 IFDNFAITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSGNGQEANALDVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + +H Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKKFTLHI 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H V Y+ + +++ +FG I V+ LA + + + Sbjct: 466 HPYVAAYVNQGLVSLKRKWQMKFGFGIKVIPNQNLAFLEYKFYDTKGEELDMKEE 520 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+Y+ KV ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEISIALLEDKNLVELQKEERNLSFSVGNMYVGKVKKIMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVVSDRKKL 94 >gi|288553572|ref|YP_003425507.1| RNAse G [Bacillus pseudofirmus OF4] gi|288544732|gb|ADC48615.1| RNAse G [Bacillus pseudofirmus OF4] Length = 503 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 121/400 (30%), Positives = 205/400 (51%), Gaps = 4/400 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 +Q I E + Q LLVQ+ KE G KG ++ +S+ G+Y+V MP R Sbjct: 87 KQRNITEFVTKGQELLVQVTKEGFGQKGPRLSGVVSMPGKYTVYMPEGGYVGVSRR--MG 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + + G+I+RT I++D +L W++V + AP Sbjct: 145 TEEERERLRGIGEDLLKENEGMIIRTVCEDAKPEVIEQDLHFLRTSWESVWQEGKEKRAP 204 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+++ +LI++ + D I EI++ Y+ K + + ++ ++ I Sbjct: 205 ALIHQGSSLIEKMMLDFSLNQIDEIVIDDADDYQTLKALLAPYSDVHEKVRLYHD-KENI 263 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F GI+ +LD + ++ L + Y+I++QTEAL IDVN+G+ T + ++DT +TNLE Sbjct: 264 FSVFGIDKELDKALRRQIWLKNGAYLIVDQTEALTVIDVNTGKFTGKTDLQDTVRKTNLE 323 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+EIARQLRLRD +G+I++DFIDM+ +++ V + K LK+DR + V ++ GL+ Sbjct: 324 AAKEIARQLRLRDTSGIIIIDFIDMKREEDREYVLEAFKRGLKQDRTKTNVVGLTGLGLV 383 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EM+R+++R S+ S +K C CK G + S + A I R + EY I++ S Sbjct: 384 EMTRKKVRQSLQASLSKACPTCKEQGSVLSDEAQAYKIERLIWEY-RGMDHEAILIELPS 442 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V L K + + E G I ++ + ++ F I Sbjct: 443 AVSAVLAGPKGELLKQLEEATGFRILLMPNKHMPEEAFAI 482 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K+ + + E R ++ + +V EL E + +I GN+Y+ +V V P +QAAFVD Sbjct: 1 MNRKIYFN-TATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++GFL ++ Sbjct: 60 IGREKNGFLYRDDLLS 75 >gi|288802261|ref|ZP_06407701.1| ribonuclease, Rne/Rng family [Prevotella melaninogenica D18] gi|288335228|gb|EFC73663.1| ribonuclease, Rne/Rng family [Prevotella melaninogenica D18] Length = 523 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 130/497 (26%), Positives = 229/497 (46%), Gaps = 16/497 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128 P ALL++ + + E + G++ + D E A + Sbjct: 11 PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++ S V S+ + + ++ +Q ++ Q ++VQIVKE Sbjct: 71 LDLGSQFNSYAKYLKQVQSDRKKLYPIQKATRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 KG +T +S AGR+ VL+P K S+ + + + P GVI Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIKSGEERAR--LKQLIQSITPKNFGVI 188 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307 +RT + E+ + + L+ W+ + P LV+EE +RDL+ Sbjct: 189 VRTVAEGKRVAELDAEMKVLLSRWNEAITRLQKTQERPQLVFEETGRAVAMLRDLFNPTY 248 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 I V+ ++ + ++ L+ P A IV++Y PIF + Q+ S + Sbjct: 249 ENIYVNDDEICTAVRHYVSLIAPEKAGIVKKYTGKVPIFDNFDVTKQIKSSFGKTINYGH 308 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 Y+II TEA+ +DVNSG T+E E AL TNL AA+E+ARQLRLRD+ G+IVVDF Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R + + C C Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDENCPTC 428 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G G IRS + R ++ + + +H H V Y+ + +++ ++G Sbjct: 429 FGTGKIRSSILFTDQLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGLISLKRKWQMKYG 488 Query: 548 VSINVVIGIELADKLFY 564 + +N++ +LA + Sbjct: 489 LGVNIIPSQKLAYLQYE 505 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D R+ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97 G R FL +L++ Y + SDR+ L + Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPIQKATR 102 >gi|94987213|ref|YP_595146.1| ribonucleases G and E [Lawsonia intracellularis PHE/MN1-00] gi|94731462|emb|CAJ54825.1| Ribonucleases G and E [Lawsonia intracellularis PHE/MN1-00] Length = 666 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 159/421 (37%), Positives = 247/421 (58%), Gaps = 5/421 (1%) Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 + N + + + P K K+ IQ+V+K Q +LVQ+VKE GNKGA +TT Sbjct: 237 NTKNGFLQIDEVHPEYYLQPHEPTKLKKYPPIQKVLKAGQEILVQVVKEPTGNKGAFLTT 296 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 +LSLAGR+ VL P + ISRK+ + +R L+E+ +GL+ +G+G I+RT +K Sbjct: 297 WLSLAGRFLVLTPGQEQIG-ISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGTSK 355 Query: 259 IEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 +++D +L R+W +R+ A +P L+YEE L RA+RD DI+EI V + Sbjct: 356 TTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPETK 415 Query: 319 REAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 + ++ LL P ++V + P++ + Q+ +H EV +PS G ++ +QTE Sbjct: 416 QAIQEVTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFDQTE 475 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 AL++ID+NSGR + E A +TN+EAA IA+QLRLRD+ G IV+DFI+M+E + R Sbjct: 476 ALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPAHCR 535 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 VEK+L+ ++K DRAR VG +S+FGLL++ RQRI SS + + + C YC+G G R+ Sbjct: 536 DVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRRNIE 595 Query: 498 SVALSILRSVEEYLLQY---TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 A+ LR + + + Q H I ++ LYLLN KR ++ E FG+ +++ I Sbjct: 596 WQAIQTLREIHKKMQQTVTAGKHEYIHTLDQELGLYLLNNKRNRLIALEQEFGIHLDIRI 655 Query: 555 G 555 Sbjct: 656 S 656 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 47/83 (56%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 KMLI E+ V + D ++ E E H +I+GNIY + ++ +LQAAF++Y Sbjct: 176 NKKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFINY 235 Query: 62 GGNRHGFLPFLEIHPDYYQIPFS 84 G ++GFL E+HP+YY P Sbjct: 236 GNTKNGFLQIDEVHPEYYLQPHE 258 >gi|254881515|ref|ZP_05254225.1| ribonuclease G [Bacteroides sp. 4_3_47FAA] gi|294775456|ref|ZP_06740969.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510] gi|254834308|gb|EET14617.1| ribonuclease G [Bacteroides sp. 4_3_47FAA] gi|294450697|gb|EFG19184.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510] Length = 537 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ + ++ Q ++VQIVKE KG +T LS AGRY VL+P K + ++ Sbjct: 121 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 180 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W+ + Sbjct: 181 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 238 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E + E KD++ L+ P A IV+ Y+ P Sbjct: 239 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 298 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF GI Q+ S ++ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 299 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 358 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + ++ Sbjct: 419 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 478 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H + Y+ + +++ ++G I ++ LA + + + Sbjct: 479 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDVHGEEIDMKEE 533 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +++++D +E + +L D + E E GN+YL +V ++ P L A FVD Sbjct: 15 TSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDV 73 Query: 62 GGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 74 GFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 107 >gi|323436040|ref|ZP_01049920.2| ribonuclease, Rne/Rng family [Dokdonia donghaensis MED134] gi|321496355|gb|EAQ39892.2| ribonuclease, Rne/Rng family [Dokdonia donghaensis MED134] Length = 512 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 132/558 (23%), Positives = 230/558 (41%), Gaps = 62/558 (11%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 I S +L+D ++ EL + + K G+IY+A V + L AAFV+ G + Sbjct: 2 IIRSSSSVVDFALLKDGKLIELHKDEDENKFNVGDIYIANVRKAVSGLNAAFVNVGYEKD 61 Query: 67 GFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126 FL + ++ P ++P LLK T + + +++ I Sbjct: 62 AFLHYHDLGP---KLPT-----LLKYIKSISTGKLK-----DYSLQNFTFEKDIDKNGKI 108 Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVK 186 A+ + + + A + + + +Y + +R + +I Sbjct: 109 ADVLKSKQSVLVQIAKEPISTKGPRISSE------LSIAGRYIVLVPFSDRISISQKIES 162 Query: 187 EERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG 246 +E + + T + G G Sbjct: 163 KEEKARLKRLVTSIRPKGF----------------------------------------G 182 Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 VI+RT E+ +D + L+ W + + + P V E N +RD++ Sbjct: 183 VIVRTVAQGVKVAELDKDLQNLVDKWTTMSKKIKGAHHPSKVLGEMNRASSILRDIFNDS 242 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 + I V E Y + K+++ + P IV+ Y PIF + GIE Q+ + V++ Sbjct: 243 FTSITVDDETLYYQIKEYLSEIAPHKESIVKLYNSQVPIFEKFGIERQIKTSFGQTVSMS 302 Query: 367 SRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425 Y++I TEAL +DVNSG RS + EDTAL+ N+ AA E+ARQL LRD+ G+IVV Sbjct: 303 RGAYLVIEHTEALHVVDVNSGNRSNKAKSQEDTALEVNMIAASEVARQLSLRDMGGIIVV 362 Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485 DFIDM + +N R + LK+ +K+DRA+ ++ S FGL++++RQR+R + T + Sbjct: 363 DFIDMAKAENRRKLFNHLKDEMKEDRAKHKILPPSKFGLIQITRQRVRPEMNIKTREENP 422 Query: 486 YCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR 545 G I + + + + L + A + +H H V YL + ++ Sbjct: 423 N-GGTNEIEAPIVIVEKLQGQLNRIL-KSGAKKVTLHAHPFVAAYLTKGFPSIRSKWFLE 480 Query: 546 FGVSINVVIGIELADKLF 563 + V+ + Sbjct: 481 HKKWVKVMPRDAYTYLEY 498 >gi|212691237|ref|ZP_03299365.1| hypothetical protein BACDOR_00728 [Bacteroides dorei DSM 17855] gi|212666469|gb|EEB27041.1| hypothetical protein BACDOR_00728 [Bacteroides dorei DSM 17855] Length = 537 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 209/415 (50%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ + ++ Q ++VQIVKE KG +T LS AGRY VL+P K + ++ Sbjct: 121 KEGTVSTTLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 180 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W+ + Sbjct: 181 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAPKL 238 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E + E KD++ L+ P A IV+ Y+ P Sbjct: 239 PALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLP 298 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF GI Q+ S ++ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 299 IFDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 358 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + ++ Sbjct: 419 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKRFTLYI 478 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H + Y+ + +++ ++G I ++ LA + + + Sbjct: 479 HPYIAAYVNQGLVSLKRKWQMKYGFGIKIIPDQSLAFLQYRFTDVHGEEIDMKEE 533 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +++++D +E + +L D + E E GN+YL +V ++ P L A FVD Sbjct: 15 TSELVVDV-QPKEISIALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDV 73 Query: 62 GGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 74 GFEKDAFLHYLDLGPQFHSYQKYLKQVLSDRKKL 107 >gi|162455546|ref|YP_001617913.1| ribonuclease G [Sorangium cellulosum 'So ce 56'] gi|161166128|emb|CAN97433.1| ribonuclease G [Sorangium cellulosum 'So ce 56'] Length = 907 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 156/492 (31%), Positives = 251/492 (51%), Gaps = 9/492 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P RQA + + E D E +E Sbjct: 416 PREGRQAPREGREAPREGREGREAPREGRDRGGKGQQGGREGRDREQRGREQRTRERGRE 475 Query: 142 NNDVVSNVEDVKGGSP----EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 + +G ++ P + + I+EV++ Q ++VQ+ KE G KGA VT Sbjct: 476 QSRDGKGKSAARGQQSSRSWQNEPPRISKSTPIREVVREGQEVIVQVSKEPIGTKGARVT 535 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 +++SL GRY V +P R + + L++ ++ P G G+I+RT T Sbjct: 536 SHISLPGRYVVYLPTVDHIGISKRIGSEKERSR-LRDAIEAMKPPQG-GLIVRTLAEGLT 593 Query: 258 KIEIKRDFEYLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEK 316 K ++K D YL+RLW V + + AP ++Y E +L+ + RDL+ DI +I++ + Sbjct: 594 KKQLKADVGYLVRLWGEVAKKRESGVRAPAVLYTELDLVLKTARDLFTDDIEKIVIDDRE 653 Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 Y + F+++ MP A V YE PIF GIE ++ +V LPS G++II+Q Sbjct: 654 EYIRLRRFVEMFMPERADAVELYEGTEPIFDAYGIEDEIQRALSRKVPLPSGGHLIIDQA 713 Query: 377 EALVSIDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK 434 EAL +IDVN+GR + +E+T L TNLEA EEIA QLR R++ GLI++D IDME + Sbjct: 714 EALTAIDVNTGRFVGKGSKDLEETILTTNLEAVEEIAYQLRFRNIGGLIILDLIDMERAQ 773 Query: 435 NNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIR 494 N V ++L+E L +D+A+ + IS+ GL+EM+R+R R S+ + + C YC G G ++ Sbjct: 774 NREKVRRRLEELLSRDKAKTTLNRISDLGLIEMTRKRTRESLGRTILEPCFYCDGTGQLQ 833 Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 S+ +VA ILR + + ++++V+ H V+ L N +R + E E F I++V Sbjct: 834 SKQTVAYEILRQIRRERMNLPGYSVVVNAHPAVIDLLKNDERIAVQEAERLFQRRIDLVP 893 Query: 555 GIELADKLFYIE 566 E + F ++ Sbjct: 894 RKEYHLEQFDLQ 905 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 1/151 (0%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L+ + ETRV ++ + + EL E E K GNIYL KV+RV P +QAAF+D Sbjct: 1 MGKNLLVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFID 60 Query: 61 YGGNRHGFLPFLE-IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 G R FL + I PD ++ + + ++E + A + D + ++ S Sbjct: 61 VGLERAAFLHVEDLIRPDDFEAYLAGHRRTVEEERASSRGRAARGSEAPRPDESEVHELS 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVE 150 E AP + E A+ + Sbjct: 121 GAEAAPESPDLTPGRHELREGADFGAEEGFD 151 >gi|323704252|ref|ZP_08115831.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536318|gb|EGB26090.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum LX-11] Length = 473 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 135/400 (33%), Positives = 221/400 (55%), Gaps = 8/400 (2%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I + +K Q ++VQ++K+ G K VTT +SL G+Y VLMP+ R Sbjct: 79 NPSITKYVKPGQDIIVQVLKDSIGLKNPRVTTNISLPGKYVVLMPDADHVGISHRI--ED 136 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 ++ P +G+I+RTA + E ++D L +L++++ + +P Sbjct: 137 EKKRMELINIAKRVKPDNVGIIIRTAAQYVGEEEFEKDIVDLCKLYEDILNKCKFADSPE 196 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+YEE N I + IRDL + EI+V+ Y++ D++K + + + + Sbjct: 197 LIYEEENFIVKYIRDLSSLIVDEIVVNDITEYKKIFDYIKKEGLNISVKYEDGD----LV 252 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 GIE Q++ L +V L S G++II++TEAL IDVN+G+ T + + +T L+TN+EA Sbjct: 253 GLYGIEKQVERLLSKKVWLKSGGFIIIDETEALTVIDVNTGKYTGKSSLHETILKTNIEA 312 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+EIA QLRLRD+ G+IVVDFIDM+ + + + + +ESLK DR++ V ++ GL+E Sbjct: 313 AKEIALQLRLRDIGGIIVVDFIDMDSDNDRQKLLRVFEESLKSDRSKCSVLGFTHLGLVE 372 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R+RS+V E + C CKG G I S + L I RS+E L A I + ++ Sbjct: 373 MTRKRVRSNVSEYLQEKCDCCKGTGCIVSSDMMQLRINRSIERILRNTNAKKITITSNRR 432 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 V + +K I +Y ++GV I+ + +L FY++ Sbjct: 433 VQSII--EKSNIIEKYMEKYGVDISTICNNKLDTDEFYVD 470 Score = 91.6 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L D S +V L D + E E K+ I GNIY KV +Q+AF+D G Sbjct: 2 KRILFDISDKF-YQVAYLEDGLLIEYHVEHSDKRSIVGNIYKGKVKNTIKGMQSAFIDIG 60 Query: 63 GNRHGFLPFLEI 74 +++ +L ++ Sbjct: 61 IDKNAYLFVNDV 72 >gi|313893052|ref|ZP_07826629.1| putative ribonuclease G [Veillonella sp. oral taxon 158 str. F0412] gi|313442405|gb|EFR60820.1| putative ribonuclease G [Veillonella sp. oral taxon 158 str. F0412] Length = 475 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 231/457 (50%), Gaps = 7/457 (1%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 + + E ++ + + ++ + N + + D+ G + + ++ I Sbjct: 19 NEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIGGSQNAYLNLQQGKEQKI 78 Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + Q +LVQ+VKEE KGA VT +SLAGR+ VL+P S+G IS+KIT+ + Sbjct: 79 LPRLSVGQQVLVQVVKEEMLGKGARVTADVSLAGRFMVLLP-YSEGMHISKKITD-EAVR 136 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + V G G I+RTA A + EI RD EYL R W +V + + + +Y Sbjct: 137 AKLQELAAPYVQEGCGFIIRTAAAKASADEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYS 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + + R +RD +++ EIIV + G D + S V ++ D PIF + Sbjct: 197 DADFWFRLVRDYAHRNVEEIIVDSDMGESRLMDLLGHGPTSQQIKVTRHRDSTPIFKANH 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEE 409 IE QL+ L ++ LPS G + I+ TEAL DVNS T + + A N EAA+E Sbjct: 257 IEPQLEDLISRDINLPSGGSIRIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLRD+ G+IVVDFIDM++K+N + + K L K D+ + V IS+ GL+EM+R Sbjct: 317 ICRQLRLRDIGGIIVVDFIDMKDKQNQQELLKVLSAQAKLDKMKTVVCGISSLGLVEMTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVV 528 +R R + C C G GY+ S +V + I+R + E N+ + H +V Sbjct: 377 KRARQGLQTLMFDTCPQCGGTGYMLSGRTVYMQIVRRIRELFKSGRIKSNLEIEVHPEVA 436 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 YL +A + + G I++V+ +++ + + + Sbjct: 437 QYLT---KAVLEDLGDSIGRKISIVVNPQISREGYSL 470 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 4 KMLIDASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+L++ EE R+ V+ + ++ + E + + ++Y V V +QAAFVD G Sbjct: 3 KILVNVMR-EEIRMAVINEEGQLVDFVLERTDESHMANHMYKGTVKNVLNGMQAAFVDIG 61 Query: 63 GNRHGFL 69 G+++ +L Sbjct: 62 GSQNAYL 68 >gi|289523385|ref|ZP_06440239.1| cytoplasmic axial filament protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503077|gb|EFD24241.1| cytoplasmic axial filament protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 498 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 127/460 (27%), Positives = 224/460 (48%), Gaps = 5/460 (1%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 D V I L E+ + ++ E + ++++ + E Sbjct: 14 DPEESRVAILEGGRLVELFAERMWERQRAGEIYKARIDNILPGMNAAFVNLGEGRNAFLY 73 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 IK ++VQ+ K R KG VT +SL GRY VL+P S R + Sbjct: 74 LDDAKNAEIKPNGEIVVQVTKVARKGKGPRVTARISLPGRYVVLLPGASDIGVSRRIDES 133 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + VP G GVI+RT + + IK + L+ LW ++ +LAL +P Sbjct: 134 GEKER--LKGIARELVPDGFGVIVRTVASGVDEEVIKEEIGELLELWKDISDLALTMPSP 191 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y + L+ + +RD + +S++++ ++ D++ +V Y PI Sbjct: 192 SLLYRDAGLLGKVLRDELDERVSQVVIDDPYEHKLVVDYISRHSHRVQPVVELYARNIPI 251 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F IE + + + ++ L S G++ I+Q EA+ IDVN+G+ + T L TN+E Sbjct: 252 FEHFDIEKDISAALERKLWLSSGGFLYIDQVEAMTVIDVNTGKYVGTDNLRHTILDTNME 311 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA+EIARQLRLR + G+I+VDFIDM+ +++ + + L+E LK DR + +V +S GL+ Sbjct: 312 AAKEIARQLRLRSIGGIIIVDFIDMDYQEDKQKLLDYLEELLKGDRYKSKVYGVSKLGLV 371 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E++R+R R + T+ C +C G++ + +VA+ I R + + +L +I+ HS Sbjct: 372 EITRKRSRPDLKTYMTRPCPFCANMGWVLKEDAVAMDIKRFLRKVILSSKVEALILEAHS 431 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + Y+ N + ++ F ++ V+ ELA + + Sbjct: 432 AIAEYIGNHF---LSQWAQEFEKALFVLQSKELAWDKYRL 468 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++ + EE+RV +L R+ EL E ++Q G IY A++ + P + AAFV+ G Sbjct: 8 IIANVIDPEESRVAILEGGRLVELFAERMWERQRAGEIYKARIDNILPGMNAAFVNLGEG 67 Query: 65 RHGFLPFLE 73 R+ FL + Sbjct: 68 RNAFLYLDD 76 >gi|189463295|ref|ZP_03012080.1| hypothetical protein BACCOP_04012 [Bacteroides coprocola DSM 17136] gi|189430025|gb|EDU99009.1| hypothetical protein BACCOP_04012 [Bacteroides coprocola DSM 17136] Length = 524 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 124/401 (30%), Positives = 207/401 (51%), Gaps = 4/401 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I V++ Q ++VQIVKE KG +T LS AGRY VL+P K + ++ Sbjct: 108 KDGTISNVLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W++ + Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEDTISKVQKATKL 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E Y E KD++ L+ P + IV+ Y+ P Sbjct: 226 PSLVYEETSRTVAMLRDLFNPSYENIYVNDESVYNEVKDYVTLIAPERSGIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF I Q+ S V+ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 286 IFDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRSKSGNGQEANALDVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + +H Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKKFTLHI 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 H V Y+ + +++ +FG I ++ LA + Sbjct: 466 HPYVAAYINQGIVSLKRKWQMKFGFGIKIIPNQSLAFLEYK 506 Score = 115 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + E E + GN+Y+ K+ ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEISIALLEDKNLVEFQKEERNLSFSVGNMYVGKIRKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 60 VGFEKDAFLHYLDLGPQFNSYQKYLKQVISDRKKL 94 >gi|40062549|gb|AAR37494.1| cytoplasmic axial filament protein [uncultured marine bacterium 106] Length = 489 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 132/413 (31%), Positives = 224/413 (54%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + Q I ++I+ Q +LVQ+ K G KGA +T+++S+ GR V +P Sbjct: 76 EHEIFGEPSNNNGEQQKIGQLIQEGQDVLVQVSKGPIGTKGARITSHVSIPGRNLVYLPA 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 T + N + + P G I+RT ++ ++ D YL+ +W Sbjct: 136 TKTLGVS--RQINQEKERERLKEIVDRIRPENAGFIIRTVAEGHSEEDLHSDINYLVSIW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 D++ E AP L++ + N+I R IRDL+ DI +++V + + + + F++ +P Y Sbjct: 194 DDILEKYKTLPAPSLLHSDLNVIFRTIRDLFSADIRKLVVDDKSQFNKVRQFVRSYLPRY 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y P+F GIE ++D +V L S G+++I+QTEAL ++DVN+GR + Sbjct: 254 GSVIENYTKAEPVFDHYGIENEIDRALGNKVWLRSGGHLVIDQTEALTAVDVNTGRFVGK 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 E T L+TN+EAAEEI QL+LR++ G+I++DFIDME +++ + V + LK+ L+ D+A Sbjct: 314 ESHEKTILRTNIEAAEEIVYQLQLRNIGGIIIIDFIDMETQQHRQMVYQTLKDKLRSDKA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R ++ IS GL+EM+R+R R ++ C YC G G I+S S+V R V Sbjct: 374 RSKILQISEMGLVEMTRKRDRENLNRYLCDPCPYCDGTGQIKSPSTVCYEAFREVRRSCR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + T ++ + HSDV Y+ +++ + E G SI + + EL + F + Sbjct: 434 RNTKGSVAIFLHSDVFKYIQEEEQEAVKFLEDEMGRSITIKLSDELHREQFEL 486 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA +++I+ + ETRV V+ + EL E E ++ NIY KV V P +++AFVD Sbjct: 1 MAKEIIINHT-SHETRVAVIEGGELSELYHEREKTIRLVDNIYKGKVLNVLPGMESAFVD 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G + FL +I P+ Sbjct: 60 IGSEKAAFLHIDDILPE 76 >gi|282860075|ref|ZP_06269156.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010] gi|282587163|gb|EFB92387.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010] Length = 524 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 120/423 (28%), Positives = 212/423 (50%), Gaps = 3/423 (0%) Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 V S+ + + + I++ ++ Q +LVQ+VKE KG +T +S Sbjct: 85 KQVQSDRKRLYPIQKAAAQPDIDKDGTIKDAVQVGQEVLVQVVKEPISTKGPRLTGEISF 144 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRY VL+P +K S+ + + + P GVI+RT + E+ Sbjct: 145 AGRYIVLLPFGNKISVSSKIKSGEERAR--LKQLIRSITPKNFGVIVRTVAEGKRVAELD 202 Query: 263 RDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + + L++ W++V + P LV+EE IRDL+ I V+ E+ Sbjct: 203 AEMQILLKRWNDVITKVQKTQDRPQLVFEETGRAVAMIRDLFNPTYENIYVNDEEICTAV 262 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + ++ ++ P A IV+QY PIF I Q+ S + Y+II TEA+ Sbjct: 263 RHYITMIAPEKASIVKQYTGKLPIFDNFDITRQIKSSFGKTINYGHGCYLIIEHTEAMHV 322 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSG +E E AL TNL AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + + Sbjct: 323 VDVNSGNRAKEKGQEQNALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYE 382 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++ +++++DRAR + +S FGL++++RQR+R ++ + C C G G +R+ Sbjct: 383 RMSKNMQQDRARHNILPLSKFGLMQITRQRVRPAMDVDVDETCPTCFGTGKVRASILFTD 442 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + ++ + ++ +H H V Y+ + +++ ++G+ ++V+ +LA Sbjct: 443 QLEHKIDRLVNKFGVKKFYLHVHPYVAAYINKGFISIKRKWQMQYGMGVHVIPSQKLAYL 502 Query: 562 LFY 564 + Sbjct: 503 QYE 505 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D ++ E E GNIY+AKV ++ P L A FV+ Sbjct: 1 MTSEIIIDA-QSKEISIALLEDKKLVEYQREPREANFSVGNIYVAKVKKLMPGLNACFVN 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104 G R FL +L++ Y + SDR+ L A Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKRLYPIQKAAAQPDIDKD 109 >gi|237715012|ref|ZP_04545493.1| ribonuclease G [Bacteroides sp. D1] gi|262409039|ref|ZP_06085584.1| ribonuclease G [Bacteroides sp. 2_1_22] gi|294647092|ref|ZP_06724698.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a] gi|294807152|ref|ZP_06765969.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298481900|ref|ZP_07000090.1| ribonuclease G [Bacteroides sp. D22] gi|229444845|gb|EEO50636.1| ribonuclease G [Bacteroides sp. D1] gi|262353250|gb|EEZ02345.1| ribonuclease G [Bacteroides sp. 2_1_22] gi|292637556|gb|EFF55968.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a] gi|294445652|gb|EFG14302.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298272122|gb|EFI13693.1| ribonuclease G [Bacteroides sp. D22] Length = 524 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 125/415 (30%), Positives = 214/415 (51%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + + +K Q ++VQIVKE KG +T+ +S AGRY VL+P K + ++ Sbjct: 108 KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W++ + Sbjct: 168 EERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKATKY 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+YEE + +RDL+ I V+ E Y E KD++ L+ P A IV+ Y+ P Sbjct: 226 PTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVSLIAPDRANIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 I+ GI Q+ S ++ S Y+II TEAL +DVNSG T+ ++ AL+ N Sbjct: 286 IYDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++ +++KDRAR + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +TT+ C C G G I+S ++ ++ + + +H Sbjct: 406 LMQITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHV 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H V Y+ + +++ ++G I ++ +LA + + + Sbjct: 466 HPYVAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520 Score = 115 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL ++ ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119 G + FL +L++ P + + +Q L + + + D+ G V+ Sbjct: 60 VGYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLTSISKATLLPDLDKDGTVSNTLKVG 119 Query: 120 LEEVAPIANFSQETEEESIISA 141 E V I T+ + S Sbjct: 120 QEVVVQIVKEPISTKGPRLTSE 141 >gi|237723036|ref|ZP_04553517.1| ribonuclease G [Bacteroides sp. 2_2_4] gi|260173652|ref|ZP_05760064.1| ribonuclease G [Bacteroides sp. D2] gi|293372583|ref|ZP_06618965.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f] gi|299146729|ref|ZP_07039797.1| ribonuclease G [Bacteroides sp. 3_1_23] gi|315921914|ref|ZP_07918154.1| ribonuclease G [Bacteroides sp. D2] gi|229447558|gb|EEO53349.1| ribonuclease G [Bacteroides sp. 2_2_4] gi|292632392|gb|EFF50988.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f] gi|298517220|gb|EFI41101.1| ribonuclease G [Bacteroides sp. 3_1_23] gi|313695789|gb|EFS32624.1| ribonuclease G [Bacteroides sp. D2] Length = 524 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 125/415 (30%), Positives = 214/415 (51%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + + +K Q ++VQIVKE KG +T+ +S AGRY VL+P K + ++ Sbjct: 108 KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W++ + Sbjct: 168 EERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKATKY 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+YEE + +RDL+ I V+ E Y E +D++ L+ P A IV+ Y+ P Sbjct: 226 PTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIRDYVSLIAPDRANIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 I+ GI Q+ S V+ S Y+II TEAL +DVNSG T+ ++ AL+ N Sbjct: 286 IYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++ +++KDRAR + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +TT+ C C G G I+S ++ ++ + + +H Sbjct: 406 LMQITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHV 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H V Y+ + +++ ++G I ++ +LA + + + Sbjct: 466 HPYVAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N++++D +E + +L D + EL E + GN+YL ++ ++ P L A FVD Sbjct: 1 MTNELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119 G + FL +L++ P + + +Q L + + + D+ G V+ Sbjct: 60 VGYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLTSISKATLLPDLDKDGTVSNTLKVG 119 Query: 120 LEEVAPIANFSQETEEESIISA 141 E V I T+ + S Sbjct: 120 QEVVVQIVKEPISTKGPRLTSE 141 >gi|325300025|ref|YP_004259942.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170] gi|324319578|gb|ADY37469.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170] Length = 524 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 121/415 (29%), Positives = 208/415 (50%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ I +++ Q ++VQIVKE KG +T LS AGRY VL+P K + ++ Sbjct: 108 KEGSISNILQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W+ + Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKATKM 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E Y E K+++ L+ P IV+ Y+ P Sbjct: 226 PTLVYEETSRTVAMLRDLFNPSYENIYVNDETVYNEVKNYVALIAPERVGIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF I Q+ S V+ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 286 IFDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRSKSANGQEANALDVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + +H Sbjct: 406 LMQITRQRVRPAMDVTTDENCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKKFTLHI 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H V Y+ + +++ ++G I ++ LA + + + Sbjct: 466 HPYVAAYINQGIVSLKRKWQMKYGFGIKIIPNQSLAFLQYKFYDAHNEEIDMKEE 520 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + E E + GN+Y+ KV ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEISIALLEDKNLVEFQKEERNLSFSVGNMYVGKVRKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 60 VGFEKDAFLHYLDLGPQFLSFQKYLKQVISDRKKL 94 >gi|262190354|ref|ZP_06048617.1| ribonuclease E [Vibrio cholerae CT 5369-93] gi|262033757|gb|EEY52234.1| ribonuclease E [Vibrio cholerae CT 5369-93] Length = 840 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 140/462 (30%), Positives = 212/462 (45%), Gaps = 33/462 (7%) Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 +I RAIRD +DI EI++ Y A + ++L+ P + V++YE P+F IE Sbjct: 1 MIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQIES 60 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ IE+TAL TNLEAA+EIARQ Sbjct: 61 QIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQ 120 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLRDL GL+V+DFIDM ++ R VE +L+E+++ DRARVQ+G IS FGLLEMSRQR+ Sbjct: 121 LRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMSRQRLS 180 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ E++ +C CKG G IR S+ALS+LR +EE L+ ++ + YLLN Sbjct: 181 PSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVSIASYLLN 240 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +KR +I E V I +V ++ F + + + + + +A + Sbjct: 241 EKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKKLEAMKEAEG 300 Query: 594 IECVWQDEALLPIPKS--------------ESLEDIQDNIVSEESTGV------------ 627 E V + I + + + + E Sbjct: 301 KEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAEVKQPAQSGFFSRVFKA 360 Query: 628 ------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + D + + D + N+ + Sbjct: 361 IASLFSTTPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDKNRRRGNEENNERNDK 420 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSD-PIVKKTRWWKRR 722 P E N ++ P +++ RR Sbjct: 421 ETSNNNRKPQERKPKQERGERNERNDRNERPETERSERQDRR 462 >gi|326798547|ref|YP_004316366.1| ribonuclease, Rne/Rng family [Sphingobacterium sp. 21] gi|326549311|gb|ADZ77696.1| ribonuclease, Rne/Rng family [Sphingobacterium sp. 21] Length = 517 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 150/575 (26%), Positives = 254/575 (44%), Gaps = 60/575 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++D+S T + +L+D ++ EL+ E N Y Sbjct: 1 MVKELIVDSSPETGTTIALLQDKQLVELNKE------QVNNNY----------------- 37 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +I+ L + I + A D D + Sbjct: 38 ---------AVGDIY-------------LGRIKKIMPGLNAAFVDVGYSKDAFLHYLDLG 75 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +V + ++ + S + + +D+ + I E++ +L Sbjct: 76 PQVQSLIKLTKLVKNGSYKDKLLNSLKLEKDIN------------KAGKISEILSRNMLL 123 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 VQI KE KG +++ LS+AGR+ VL+P S +IS+KI + +R LK+I G++ Sbjct: 124 PVQIAKEPISTKGPRLSSDLSIAGRFVVLVPF-SDAVSISKKIKSNTERNRLKKIVEGIK 182 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P GVI+RT + E+++D L+ W++ + ++ + E + +R Sbjct: 183 -PQNFGVIIRTVSEGKGVAELEKDLRDLITKWESFTKRLASTDPAKKILGEMDRTSTILR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ + S I ++ Y E K +++ + P +IV+ Y+ PIF GIE Q+ + Sbjct: 242 DILTDEFSHIYINDPIIYEETKSYIQEISPDLEKIVKLYKHKDPIFEHFGIEKQIKAAFG 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQLRLRDL 419 V L Y++I TEAL IDVNSG T ED AL N EAA+EIARQLRLRD+ Sbjct: 302 KIVNLQGGAYLVIEHTEALHVIDVNSGNRTANKENQEDNALLVNKEAAKEIARQLRLRDM 361 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G++VVDFIDM + N + + LKE + DRA+ + S FGL++++RQR+R + Sbjct: 362 GGIVVVDFIDMHKPTNRKELHDYLKECMGNDRAKHTILPPSKFGLVQITRQRVRPEMTVV 421 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + C C G G IR+ + I ++ L + NI + H + ++ + Sbjct: 422 TNEKCPACGGTGEIRASIVLMDDIESNLSYVLNEQNEKNITLCVHPYIEAFIKKGFMSRR 481 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +++ R+G I V F+ + Sbjct: 482 LKWFFRYGKWIKVKAISSYFMNEFHFLNAKEEEIK 516 >gi|226330544|ref|ZP_03806062.1| hypothetical protein PROPEN_04462 [Proteus penneri ATCC 35198] gi|225201339|gb|EEG83693.1| hypothetical protein PROPEN_04462 [Proteus penneri ATCC 35198] Length = 451 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 122/392 (31%), Positives = 202/392 (51%), Gaps = 2/392 (0%) Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 +A +R Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS RST Sbjct: 13 DFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRST 72 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 R IE+TA TNLEAA+EIARQLRLRDL GLIV+DFIDM ++ R VE +++E++++D Sbjct: 73 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 132 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 RAR+Q+G IS FGLLEMSRQR+ S+ ES+ VC C G G IR S++LS+LR +EE Sbjct: 133 RARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEEE 192 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGS 569 L+ H + + YLLN+KR + + E R V + +V ++ F + + Sbjct: 193 ALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQSNVKVVIVPNDQMQTPHFSVIRVR 252 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQ-DEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + + ++ + + + V + P + L++ + + +S Sbjct: 253 KGEEITSLSYNLAQFHESQLNEADDDVVTERKAPEQPAISAFGLQEEDTSEATTKSKKAP 312 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + + + + + + S++ + + +P + N Sbjct: 313 QPQAKTAKTEQAQATGFFSSIAKFFSNLFSSEPEPVVTQEKPQENKKENNENRRERRNNN 372 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 N + + ++++ +K R K Sbjct: 373 NRRNNNNRRDRDNDRNRDNANSEDNRKNRNQK 404 >gi|281420826|ref|ZP_06251825.1| ribonuclease G [Prevotella copri DSM 18205] gi|281405118|gb|EFB35798.1| ribonuclease G [Prevotella copri DSM 18205] Length = 523 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 128/423 (30%), Positives = 214/423 (50%), Gaps = 3/423 (0%) Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 V S+ + + S + ++ IQ V+K Q +LVQIVKE KG +T +S Sbjct: 85 KQVQSDRKKLFPFSKASKMPELEKDGSIQNVLKAGQEVLVQIVKEPISTKGPRLTGEISF 144 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRY VLMP K S+ + + LK++ ++ GVI+RT + E+ Sbjct: 145 AGRYLVLMPFGDKVSVSSKIKSGEERSR-LKQLIHSIKPK-NCGVIVRTVAEGKKVAELD 202 Query: 263 RDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + + L++ W++ P L +EE +RDL+ I V+ E +E Sbjct: 203 AELKVLVKRWEDAIAKVQKTQQRPQLAFEETGRAVALLRDLFNPSYENIYVNNEDVMKEV 262 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 K+++ L+ P A IV+ Y PIF I Q+ + V Y+II TEAL Sbjct: 263 KNYVSLIAPEKAGIVKLYTGKVPIFDNFSITKQIKAGFGRVVNYKHGAYLIIEHTEALHV 322 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSG TRE E AL NL AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + + Sbjct: 323 VDVNSGNRTREKGQEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQLLYE 382 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++ ++++KDRA+ + +S FGL++++RQR+R ++ + + C C G G I+S Sbjct: 383 RMCKNMQKDRAKHNILPLSKFGLMQITRQRVRPAMDVTVDETCPTCFGTGKIKSSILFTD 442 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + R ++ + + ++ + V ++ + ++ ++G NV+ +LA Sbjct: 443 QLERKIDRLVNKIGVKKFTLYVNPYVAAFINKGFISLKRRWQFKYGFGFNVIPSQKLAFL 502 Query: 562 LFY 564 + Sbjct: 503 QYE 505 Score = 113 bits (283), Expect = 7e-23, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID + + ++ D ++ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVVIDVQQKD-ISIALMEDKQLVEYQNEPREASFSVGNIYIAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHP------DYYQIPFSDRQALLKESNIAQTDSEAVA 104 G R FL +L++ Y + SDR+ L S ++ Sbjct: 60 VGYERDAFLHYLDLGSHFNSYQKYLKQVQSDRKKLFPFSKASKMPELEKD 109 >gi|260548915|ref|ZP_05823137.1| ribonuclease G [Acinetobacter sp. RUH2624] gi|260408083|gb|EEX01554.1| ribonuclease G [Acinetobacter sp. RUH2624] Length = 488 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 127/412 (30%), Positives = 222/412 (53%), Gaps = 4/412 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + V + + + E++ QIL VQ++K+ G KGA ++T LS+ RY VLMP + Sbjct: 75 NDMVWPRSQPTPNVFELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVLMPYGNHI 134 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 +S++I + +R+ L+ I G++ VI+RTA EI +D YL +LW+ Sbjct: 135 G-VSQRIESEEERERLRNIIEGIQAEHNLPGSVIVRTAAEGVDDAEIAQDMCYLSKLWEY 193 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ ++ P L++EE L +R IRDL ++ ++I V + + + ++F+ +P+ Sbjct: 194 IQRKQVDVAVPSLIFEELPLPQRIIRDLASEETAKIYVDSREIHGKLREFVDEFVPNMQS 253 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + Y P+F +E + QT V L S GY++I+QTEA+ +IDVN+G Sbjct: 254 RLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRS 313 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +EDT +TN+EA + IARQLRLR+L G+I++DFIDM+E + V ++ ++ L++D A+ Sbjct: 314 LEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEAIHREEVMRQFEKMLERDHAKT 373 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ- 513 ++ +S GL+EM+R+R R S+ + C C+G G++++ +V I R + Y Sbjct: 374 KITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGFVKTAETVCYEIFREILRYTRAF 433 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + V H V+ LL + + + E I + + + I Sbjct: 434 ESTSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQEQYDI 485 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E RV ++ + V EL E K+ + GNIY KV RV P +QAAFVD Sbjct: 5 MSEELLINVT-PMECRVALIENGTVNELYVERTVKRGLVGNIYKGKVVRVLPGMQAAFVD 63 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 64 IGLSRTAFLHINDM 77 >gi|325856414|ref|ZP_08172130.1| S1 RNA binding domain protein [Prevotella denticola CRIS 18C-A] gi|325483598|gb|EGC86570.1| S1 RNA binding domain protein [Prevotella denticola CRIS 18C-A] Length = 523 Score = 237 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 129/497 (25%), Positives = 227/497 (45%), Gaps = 16/497 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128 P ALL++ + + E + G++ + D E A + Sbjct: 11 PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++ S V S+ + + ++ +Q ++ Q ++VQIVKE Sbjct: 71 LDLGSQFSSYAKYLKQVQSDRKRLYPIQKASRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 KG +T +S AGR+ VL+P K S+ + + + P GVI Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIRSGEERAR--LKQLIQSITPKNFGVI 188 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307 +RT + E+ + + LM W+ + P L++EE +RDL+ Sbjct: 189 VRTVAEGKRVAELDAEMKVLMSRWNEAITRVQKTQERPQLIFEETGRAVAMLRDLFNPTY 248 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 I V+ + + ++ L+ P A IV++Y PIF + Q+ S + Sbjct: 249 ENIYVNDNEICTAVRHYVSLIAPEKAGIVKKYNGKVPIFDNFDVTKQIKSSFGKTINYGH 308 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 Y+II TEA+ +DVNSG T+E E AL TNL AA+E+ARQLRLRD+ G+IVVDF Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R + + C C Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDEDCPTC 428 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G G IRS + R + + + +H H V Y+ + +++ ++G Sbjct: 429 FGTGKIRSSILFTDQLERKIGRLVNKVGVKKFYLHVHPYVAAYINKGFVSLKRKWQIKYG 488 Query: 548 VSINVVIGIELADKLFY 564 + ++++ +LA + Sbjct: 489 MGVHIIPSQKLAFLQYE 505 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D R+ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97 G R FL +L++ Y + SDR+ L ++ Sbjct: 60 VGYERDAFLHYLDLGSQFSSYAKYLKQVQSDRKRLYPIQKASR 102 >gi|327312504|ref|YP_004327941.1| S1 RNA binding domain-containing protein [Prevotella denticola F0289] gi|326944947|gb|AEA20832.1| S1 RNA binding domain protein [Prevotella denticola F0289] Length = 523 Score = 237 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 129/497 (25%), Positives = 228/497 (45%), Gaps = 16/497 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128 P ALL++ + + E + G++ + D E A + Sbjct: 11 PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++ S V S+ + + ++ +Q ++ Q ++VQIVKE Sbjct: 71 LDLGSQFSSYAKYLKQVQSDRKRLYPIQKASRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 KG +T +S AGR+ VL+P K S+ + + + P GVI Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIRSGEERAR--LKQLIQSITPKNFGVI 188 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307 +RT + E+ + + LM W+ + P L++EE +RDL+ Sbjct: 189 VRTVAEGKRVAELDAEMKVLMSRWNEAITKVQKTQERPQLIFEETGRAVAMLRDLFNPTY 248 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 I V+ + + ++ L+ P A IV++Y PIF + Q+ S + Sbjct: 249 ENIYVNDNEICTAVRHYVSLIAPEKAGIVKKYNGKVPIFDNFDVTKQIKSSFGKTINYGH 308 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 Y+II TEA+ +DVNSG T+E E AL TNL AA+E+ARQLRLRD+ G+IVVDF Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R + + C C Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDEDCPTC 428 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G G IRS + R ++ + + +H H V Y+ + +++ ++G Sbjct: 429 FGTGKIRSSILFTDQLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGFVSLKRKWQIKYG 488 Query: 548 VSINVVIGIELADKLFY 564 + ++++ +LA + Sbjct: 489 MGVHIIPSQKLAFLQYE 505 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D R+ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97 G R FL +L++ Y + SDR+ L ++ Sbjct: 60 VGYERDAFLHYLDLGSQFSSYAKYLKQVQSDRKRLYPIQKASR 102 >gi|225012359|ref|ZP_03702795.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-2A] gi|225003336|gb|EEG41310.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-2A] Length = 517 Score = 237 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 128/565 (22%), Positives = 230/565 (40%), Gaps = 60/565 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I SH +L+D ++ EL+ E E K G+I++ K+ + P L AAF+D Sbjct: 1 MNKELII-RSHSSAVDFALLKDGKLIELNKEVEDNKFSVGDIFVGKIRKAIPGLNAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + GFL + ++ P ++P L+K T + ++ + Sbjct: 60 VGHEKDGFLHYHDLGP---KLPS-----LIKYIKQISTGKNK-----DYLLKQFRYENDI 106 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ + + + + + + + +Y + +R + Sbjct: 107 EKDGNVGDVLSPKQTVLVQVVKEPISTKGPRLSSE------ISLAGRYMVLMPFSDRVSI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I N+ + + G ++ Sbjct: 161 SQKIEDRAEKNRLKKLVQSIRPKGFGLII------------------------------- 189 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + +I++ L ++++ P V E N +R Sbjct: 190 -----RTVAEGQKVAALDADIQQLLTRWKNLSAKLKQID---KYPTKVLSEINRSSSILR 241 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + + I V + E +D+++ + P IV+ YE+ PIF + GIE Q+ S Sbjct: 242 DIFDDNFTGIHVDDAEMQSEIQDYIESIAPDKKGIVKLYENHLPIFEKFGIERQIKSAFG 301 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 T V++ Y++I TEAL IDVNSG RS R E TAL+ N+ +A EIARQLRLRD+ Sbjct: 302 TTVSMQKGAYLVIEHTEALHVIDVNSGNRSNRSKSQEQTALEVNMISATEIARQLRLRDM 361 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFID+ +N + + + L + DR + ++ S FGL++++RQR+R + Sbjct: 362 GGIIVVDFIDLNSNENRKKLFEHLCNEMSTDRTKHKILPPSRFGLIQITRQRVRPEMNIK 421 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + G ++ S + I +H H V YLLN + Sbjct: 422 TKEPNPNQNGEVEAPIILIEKINAELSKITKNKRNDKEKIHLHLHPFVAAYLLNGFPSQR 481 Query: 540 VEYEARFGVSINVVIGIELADKLFY 564 +++ + IN+V F Sbjct: 482 LKWYFEYKKWINIVPRHAYQYLEFR 506 >gi|198277145|ref|ZP_03209676.1| hypothetical protein BACPLE_03353 [Bacteroides plebeius DSM 17135] gi|198269643|gb|EDY93913.1| hypothetical protein BACPLE_03353 [Bacteroides plebeius DSM 17135] Length = 524 Score = 237 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 124/401 (30%), Positives = 206/401 (51%), Gaps = 4/401 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I V++ Q ++VQIVKE KG +T LS AGRY VL+P K + ++ Sbjct: 108 KDGTISSVLQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W+ + Sbjct: 168 EERAR--LKQLLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKATKL 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE + +RDL+ I V+ E + E KD++ L+ P IV++Y P Sbjct: 226 PSLVYEETSRTVAMLRDLFNPSYENIYVNDETVFNEVKDYVALIAPERTGIVKRYTGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF GI Q+ S V+ S Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 286 IFDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRSKSTNGQEANALDVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM +N + + +++ ++++KDRA+ + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +T + C C G G I+ ++ ++ + + +H Sbjct: 406 LMQITRQRVRPAMDVTTDEDCPVCFGKGKIKPSILFTDTLESKIDYMVNKLKVKKFTLHI 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 H V Y+ + +++ ++G I +V LA + Sbjct: 466 HPYVAAYVNQGLMSMKRKWQMKYGFGIKIVPNQNLAFLQYK 506 Score = 115 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + ++ D + E E + GN+Y+ KV ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEISIALMEDKNLVEFQKEERNLSFSVGNMYVGKVRKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G + FL +L++ P Y + SDR+ L Sbjct: 60 VGFEKDAFLHYLDLGPQFHSYQKYLKQVISDRKKL 94 >gi|319942624|ref|ZP_08016932.1| RNase G [Sutterella wadsworthensis 3_1_45B] gi|319803803|gb|EFW00735.1| RNase G [Sutterella wadsworthensis 3_1_45B] Length = 498 Score = 237 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 122/400 (30%), Positives = 200/400 (50%), Gaps = 2/400 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+ ++ Q L+VQ+ K+ G KGA +TT +SLAGR V +PN S R + Sbjct: 96 KPIESLLHEGQRLMVQVAKDPIGTKGARLTTTISLAGRKLVYLPNDSHIGVSQRIEDAAL 155 Query: 228 DRKNLKEIARGLEVPAGMGVILRT-AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + G I+RT A T+ E D YL RLWD +R A P Sbjct: 156 REELRTLATTVRQKDEKGGYIVRTCAEEGATEQEFLSDMAYLARLWDGIRHRAQEVKKPT 215 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++ L +R +RD+ + + I V E Y +F K +P+ + YE P+F Sbjct: 216 LLYQDLTLAQRTLRDMVHEGTAVIEVDDEAEYEALLEFAKHFVPAAVDKLHHYEGERPLF 275 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + I+ +++ V L S GY++ +QTEA+ +IDVN+G + DT +TNLEA Sbjct: 276 EQYDIDEEIELALGRRVELKSGGYLVFDQTEAMSTIDVNTGAYVGKRDFSDTVFKTNLEA 335 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+ IARQLRLR+L G+I+VDFIDM + ++ +V +L+ ++ DR ++ V + GL+ Sbjct: 336 AQVIARQLRLRNLGGIIIVDFIDMAKDEHREAVLSELRRAVLLDRTKMTVSGFNELGLVA 395 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHS 525 M+R+R R S+ + + C+ C G G I++ +V ILR + Y + Sbjct: 396 MTRKRTRESLAHTLCETCSVCGGRGEIKTARTVCYDILREITRLAKLYKEMKEFRILASQ 455 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL ++ + + I + + + + + Sbjct: 456 TVIDLLLEEESQALELLQQAIERPILLEVESVYTQEQWDV 495 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++LI+ S EETRV +L D +++L E + + GN+Y +V RV P +Q+AF+D G Sbjct: 15 EQILINTSR-EETRVAILDDGLLQDLFIERACARGLVGNVYWGQVVRVLPGMQSAFLDVG 73 Query: 63 GNRHGFLPFLEI 74 R FL EI Sbjct: 74 LERTAFLHIAEI 85 >gi|218962160|ref|YP_001741935.1| ribonuclease G [Candidatus Cloacamonas acidaminovorans] gi|167730817|emb|CAO81729.1| ribonuclease G [Candidatus Cloacamonas acidaminovorans] Length = 505 Score = 237 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 132/484 (27%), Positives = 241/484 (49%), Gaps = 8/484 (1%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A+L++S + + E G++ A F + E + Sbjct: 16 PLEKRVAVLEDSRLVELFVERREQQNIVGNI-YKGIVKDVLPGMGAAFIEIGLERTAFLH 74 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +D+V + D+ + + I +++K Q ++VQ+ K G+KGA +T +S Sbjct: 75 YSDIVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKGPIGSKGARLTGQIS 134 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 + G+Y VL PN K + + + G G+I+RT + + Sbjct: 135 IPGKYLVLFPNKDKIAVSRKIYSQAERSRIR--NLLSGIKDPGYGLIVRTEAEGCEEDDF 192 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + +++ L++ W + + + AP V+EE L IRDL+ +++ +++ + + Sbjct: 193 QTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENVDRLVIDDKNFAKRI 252 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + + P + Y + PIF GIE +++++ + + LPS G + I QTEALV+ Sbjct: 253 ISQLTDISPELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLPSGGNIKIEQTEALVA 312 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G T + ++T +TNLEAA EIARQ+RLRDL+G+I++DFIDM E+K V + Sbjct: 313 IDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIIDFIDMVEEKYKNEVLE 372 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 LK+ L++DRA+ +V + + GL+E++R+R+R++++ + + C +C G+G I S+ SV + Sbjct: 373 MLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPFCNGSGRILSKDSVIM 432 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 I R + N+ + + D LLN + ++ A + I + Sbjct: 433 RIYRWLNRSDYFIKDKNLRIVVNPD----LLNHIKQHNEDFTA-YKEQIEFTSDPSIRID 487 Query: 562 LFYI 565 F + Sbjct: 488 QFKV 491 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +++++ H E RV VL D+R+ EL E ++ I GNIY V V P + AAF++ Sbjct: 7 NTEIIVNV-HPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGAAFIEI 65 Query: 62 GGNRHGFLPFLEIHPDYYQI 81 G R FL + +I D+ I Sbjct: 66 GLERTAFLHYSDIVMDFLDI 85 >gi|160886224|ref|ZP_02067227.1| hypothetical protein BACOVA_04231 [Bacteroides ovatus ATCC 8483] gi|156108109|gb|EDO09854.1| hypothetical protein BACOVA_04231 [Bacteroides ovatus ATCC 8483] Length = 524 Score = 237 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 125/415 (30%), Positives = 215/415 (51%), Gaps = 4/415 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + + +K Q ++VQIVKE KG +T+ +S AGRY VL+P K + ++ Sbjct: 108 KDGTVSNTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSS 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + P GVI+RT + E+ + + L++ W++ + Sbjct: 168 EERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKATKY 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+YEE + +RDL+ I V+ E Y E +D++ L+ P A IV+ Y+ P Sbjct: 226 PTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIRDYVSLIAPDRANIVKLYKGQLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 I+ GI Q+ S V+ S Y+II TEAL +DVNSG T+ ++ AL+ N Sbjct: 286 IYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRTKNANGQEGNALEVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++ +++KDRAR + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ +TT++C C G G I+S ++ ++ + + +H Sbjct: 406 LMQITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKKFSLHV 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H V Y+ + +++ ++G I ++ +LA + + + Sbjct: 466 HPYVAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLQYVFYDTHGEEIDMKEE 520 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N++++D +E + +L D + EL E + GN+YL ++ ++ P L A FVD Sbjct: 1 MTNELVVDV-QPKEVSIALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119 G + FL +L++ P + + +Q L + + + D+ G V+ Sbjct: 60 VGYEKDAFLHYLDLGPQFNSLEKFVKQTLSDKKKLTSISKATLLPDLDKDGTVSNTLKVG 119 Query: 120 LEEVAPIANFSQETEEESIISA 141 E V I T+ + S Sbjct: 120 QEVVVQIVKEPISTKGPRLTSE 141 >gi|332826705|gb|EGJ99527.1| hypothetical protein HMPREF9455_04123 [Dysgonomonas gadei ATCC BAA-286] Length = 524 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 132/500 (26%), Positives = 228/500 (45%), Gaps = 11/500 (2%) Query: 73 EIHPDYYQIPFSDRQALLKESNIAQTDSEA-------VADDVTHGDVTIPNDHSLEEVAP 125 ++ P+ I + + L++ + S A + G D ++ A Sbjct: 8 DVQPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVDIGYKKDAF 67 Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185 + + +S+ + + + S + + I +++K Q +LVQI Sbjct: 68 LHYLDLGAQFKSVDKFYKQALVDKKKFPNISKMKLENDIDKDGSISDILKPGQEILVQIA 127 Query: 186 KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245 KE KG +T+ LSLAGR+ V++P K + + + P Sbjct: 128 KEPISTKGPRLTSELSLAGRFLVVIPFNDKVSVSQKIKSKEERAR--LRQLIQSIKPKNF 185 Query: 246 GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK 305 GVI+RT + ++ + + L++ WD+ S P LV+EE I +RD++ Sbjct: 186 GVIVRTVAEGKKVADLDTELKTLVKRWDDNLPKIQKSKLPTLVFEETGRIVALLRDVFNS 245 Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365 EI V+ + KD++ + P IV+QY+ IF G+ Q+ +L VT Sbjct: 246 SFQEIHVNDPDTCNQIKDYISFIAPEKKNIVKQYDGDLTIFDNFGVTKQIKALFGKTVTF 305 Query: 366 PSRGYVIINQTEALVSIDVNSG--RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 + Y+II TEAL IDVNSG E E+ A + N AAEEI RQLRLRD+ G+I Sbjct: 306 RNGAYLIIEHTEALHVIDVNSGNRSKNPEAGQENNAWEVNSAAAEEITRQLRLRDMGGII 365 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDM E ++ + +++E + DRA+ + +S FGL++++RQR+R + +TT++ Sbjct: 366 VIDFIDMTEGEHRSQLITRMQELMANDRAKHNILPLSKFGLMQITRQRVRPEMEITTTEI 425 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G IR ++ + + +H H V ++ + +++ Sbjct: 426 CPNCFGKGEIRPSILFTDTLRMKISYLVKDLKVKKFTLHVHPYVAAFINQGLVSLKWQWK 485 Query: 544 ARFGVSINVVIGIELADKLF 563 R+ IN++ LA + Sbjct: 486 WRYSRGINILPNQNLALLEY 505 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 2/142 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D E + VL D ++ EL E GNIY KV ++ P L AAFVD Sbjct: 1 MNSELVVDV-QPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119 G + FL +L++ + + +QAL+ + + +D+ G ++ Sbjct: 60 IGYKKDAFLHYLDLGAQFKSVDKFYKQALVDKKKFPNISKMKLENDIDKDGSISDILKPG 119 Query: 120 LEEVAPIANFSQETEEESIISA 141 E + IA T+ + S Sbjct: 120 QEILVQIAKEPISTKGPRLTSE 141 >gi|51891564|ref|YP_074255.1| ribonuclease G [Symbiobacterium thermophilum IAM 14863] gi|51855253|dbj|BAD39411.1| ribonuclease G [Symbiobacterium thermophilum IAM 14863] Length = 567 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 129/429 (30%), Positives = 220/429 (51%), Gaps = 3/429 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 E + R+ I E+++ Q +LVQ+ KE G KGA VT ++L GR+ VLMP+ Sbjct: 81 EGETPLPRSGRRPTIGELVRTGQDILVQVAKEPIGTKGARVTRNITLPGRFLVLMPHVDY 140 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 R ++ + P GMG+I+RT ++ E+ D +L R W + Sbjct: 141 VGVSRRIT--DERERDRLKQIAHAVKPDGMGLIVRTVAEGASEEELAHDAAFLERHWQQI 198 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 A + AP LV+ + LI R +RD +S +V Y A ++L P Sbjct: 199 AARARTARAPSLVHHDQGLIHRLVRDGLDDSVSLFLVDQRSAYDTALAVVELHAPQLKDR 258 Query: 336 VRQY-EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V+ Y +F G+E++++ + V L S GY+II+QTEAL +IDVN+G+ Sbjct: 259 VKLYTRSDQTLFDYYGVEMEIEKALRRRVWLRSGGYIIIDQTEALTAIDVNTGKFVGSTN 318 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 + DT +TNLEAA EIARQLRLRD+ G+I++DFIDM+ + + + V + L+E+L++DR R Sbjct: 319 LADTVFRTNLEAAREIARQLRLRDIGGIIIIDFIDMDREDHRQQVIQALEEALRRDRTRA 378 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 + ++ GLLEM+R++ R ++ E TK C C G G + ++ ++A + + + Q Sbjct: 379 NILGLTQLGLLEMTRKKSRQNLSEVLTKPCPACDGRGKVLNEQTMAHRVRAEIRRIMKQS 438 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 ++ +++ H V ++ A + E +I + E++ + ++ + + Sbjct: 439 SSEALLMEVHPSVAALVIRPGGANLRALEEELARTIYIRGNSEVSPDSWSLKALGTREEV 498 Query: 575 VNTGHKVGS 583 V + Sbjct: 499 EAKALPVSA 507 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L+ ++TR VL D + EL E ++I GNIY KV V P +QAAFV+ Sbjct: 1 MRKEILLTVDI-DQTRAAVLEDGELVELYIEQPVHERIVGNIYKGKVENVLPGMQAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP 76 G R+ FL + P Sbjct: 60 IGLERNAFLYVDDAQP 75 >gi|325270176|ref|ZP_08136783.1| ribonuclease G [Prevotella multiformis DSM 16608] gi|324987477|gb|EGC19453.1| ribonuclease G [Prevotella multiformis DSM 16608] Length = 523 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 130/497 (26%), Positives = 228/497 (45%), Gaps = 16/497 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128 P ALL++ + + E + G++ + D E A + Sbjct: 11 PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 + S V S+ + + ++ +Q ++ Q ++VQIVKE Sbjct: 71 LDLGGQFNSYAKYLKQVQSDRKRLYPIQKASRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 KG +T +S AGR+ VL+P K S+ + + + P GVI Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIRSGEERAR--LKQLIQSITPKNFGVI 188 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307 +RT + E+ + + L+ W+ + + P L++EE +RDL+ Sbjct: 189 VRTVAEGKRVAELDAEMKVLLNRWNEAIQRVQKTQERPQLIFEETGRAVAMLRDLFNPTY 248 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 I V+ E+ + ++ L+ P A IV++Y PIF + Q+ S V Sbjct: 249 ENIYVNDEEICTAVRHYVSLIAPEKAGIVKRYTGKVPIFDNFDVTKQIKSSFGKTVNYGH 308 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 Y+II TEA+ +DVNSG T+E E AL TNL AA+E+ARQLRLRD+ G+IVVDF Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ + C C Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDVDVDENCPTC 428 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G G IRS + R ++ + + +H H V Y+ + +++ ++G Sbjct: 429 FGTGKIRSSILFTDQLERKIDRLVNKVGVRKFYLHVHPYVAAYINKGLVSLKRKWQMKYG 488 Query: 548 VSINVVIGIELADKLFY 564 ++V+ +L + Sbjct: 489 TGVHVIPSQKLGFLQYE 505 >gi|90415740|ref|ZP_01223674.1| cytoplasmic axial filament protein [marine gamma proteobacterium HTCC2207] gi|90333063|gb|EAS48233.1| cytoplasmic axial filament protein [marine gamma proteobacterium HTCC2207] Length = 497 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 119/410 (29%), Positives = 211/410 (51%), Gaps = 11/410 (2%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++++ + Q + VQ++K+ G KGA ++ LS+A Y V M R + Sbjct: 86 GEPDIRKLLHDGQQIAVQVIKDPVGTKGARLSAQLSVASHYLVYMVEGKHLGVSQRIESE 145 Query: 226 PVDRKNLKEIARGL----------EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + LK + + + P G ILRTA + E++ +L RLW ++ Sbjct: 146 SERER-LKLMLSTIVDEVSAEEGVKNPLSGGYILRTAADGAEEAELRNTVRFLRRLWQDI 204 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + +N+ AP +YE+ L KR +RD+ ++ +I V + + + F P R+ Sbjct: 205 LQRKVNAKAPSCLYEDLPLYKRVLRDMVGTEVEKICVDSREVFDKLTHFGNKFNPDMVRL 264 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y P+F+ GIE ++ Q +V L S G+V+ +QTEA+ +IDVN+G + Sbjct: 265 LEHYPGERPLFYMHGIEEEIAKALQRKVMLKSGGHVVFDQTEAMSTIDVNTGAFVGHRNL 324 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 E+T +TNLEAA IARQ+R+R+L G+I++DFIDM ++ R V + L+++L +D R Sbjct: 325 EETIYKTNLEAAAVIARQMRMRNLGGIIIIDFIDMHGAEHRRQVLRALEKALARDPVRTT 384 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 + ++ GL++ +R+R S+ + + C C G GY++S S++ ILR + Y Sbjct: 385 ISGVTELGLVQTTRKRTSQSLGQILCEECPTCFGRGYVKSAESMSYEILRDILRVARAYE 444 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 N+ V + V+ L ++ + + + E +I + A + F I Sbjct: 445 CDNLRVLASAPVIERLTDEDSSQVADLELFINCTIQFRVESLYALEQFDI 494 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ + +E+ E +K+ + GNIY KV RV P +QAAFVD Sbjct: 1 MSQELLVNIT-PMETRVALVENGVPQEVCVERNNKRGLVGNIYKGKVVRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G R FL ++ P Sbjct: 60 IGEARTAFLHIDDLLP 75 >gi|297181858|gb|ADI18037.1| ribonucleases g and e [uncultured delta proteobacterium HF0200_19J16] Length = 489 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 124/413 (30%), Positives = 227/413 (54%), Gaps = 2/413 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + P++ + I ++I+ Q +LVQ+ K G KGA +T ++S+ GR V +P Sbjct: 76 ENEILGEPPRENGEKKEIGQLIQEGQDVLVQVSKGPIGTKGARITNHVSIPGRNLVYLPT 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 T + + + + P G I+RT ++ ++ D YL+ +W Sbjct: 136 TQTLGVS--RQISMERERERLKEIVDRLRPENSGFIIRTVAEGHSEEDLHSDINYLVSIW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + AP L++ + N++ R IRD++ D+ +++V + +++ + F++ +P Y Sbjct: 194 SDILERFSSLPAPSLLHSDLNIVFRTIRDIFSSDVKKLVVDDKTQFQKIRQFVRSYLPRY 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + ++ Y P P+F IE ++D +V L S G+++I+QTEAL S+DVN+GR + Sbjct: 254 SSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRSGGHLVIDQTEALTSVDVNTGRFVGK 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 E+T +TN+EAAEEI QL+LR++ G+I++DFIDM+ +++ + V + LK+ L+ D+A Sbjct: 314 ESHENTIFRTNIEAAEEIVYQLQLRNIGGIIIIDFIDMDSQQHRQMVYQTLKDHLRTDKA 373 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R ++ IS GL+EM+R+R R ++ C YC G G I+S S+V+ R + Sbjct: 374 RSKILQISEMGLVEMTRKRDRENLSRYLCDPCPYCDGTGQIKSSSTVSYEAFREIRRSCR 433 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Q T +I + +SDV Y+ +++ + E G +I +L + F + Sbjct: 434 QNTKGSITLILNSDVHRYIQQEEQEAVELLEEEMGRTITFKFSDDLHHEQFEL 486 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 61/482 (12%), Positives = 129/482 (26%), Gaps = 45/482 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I+ + ETRV V+ + EL E E ++ NIY KV V P +++AFVD Sbjct: 1 MTKEIIINHT-SHETRVAVMEGGLLTELHHEREKVMRVVDNIYKGKVLNVLPGMESAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL +I P+ +L E + + + + G + Sbjct: 60 IGEERAAFLHIDDILPE---------NEILGEPPRENGEKKEIGQLIQEGQDVLVQVSKG 110 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 A + + + S E ++ + + + Sbjct: 111 PIGTKGARITNHVSIPGRNLVYLPTTQTLGVSRQISMERERERL--KEIVDRLRPENSGF 168 Query: 181 LVQIVKEERGNKGAAVTTYLSLA---------GRYSVLMPNTSKGETISRKITNPVDRKN 231 +++ V E + ++ S + R I + Sbjct: 169 IIRTVAEGHSEEDLHSDINYLVSIWSDILERFSSLPAPSLLHSDLNIVFRTIRDIFSSDV 228 Query: 232 LKEIARGLEVPAGMGVILRTA--------GASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 K + + +R+ + + + + Sbjct: 229 KKLVVDDKTQFQKIRQFVRSYLPRYSSVLENYTKPEPLFDHYRIENEIDRALGNKVWLRS 288 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 HLV ++ + + E + + I Sbjct: 289 GGHLVIDQTEALTSVDVNTGRFVGKESHENTIFRTNIEAAEEIVYQLQLRNIGGIIIIDF 348 Query: 344 PIFFRSGIEVQL----------DSLHQTEVTLPSRGYVIINQT---EALVSIDVNSGRST 390 + D + + G V + + E L + Sbjct: 349 IDMDSQQHRQMVYQTLKDHLRTDKARSKILQISEMGLVEMTRKRDRENLSRYLCDPCPYC 408 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV---DFIDMEEKKNNRSVEKKLKESL 447 ++ + EA EI R R + ++ D +++ +VE +E Sbjct: 409 DGTGQIKSSSTVSYEAFREIRRSCRQNTKGSITLILNSDVHRYIQQEEQEAVELLEEEMG 468 Query: 448 KK 449 + Sbjct: 469 RT 470 >gi|261415726|ref|YP_003249409.1| ribonuclease, Rne/Rng family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372182|gb|ACX74927.1| ribonuclease, Rne/Rng family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325611|gb|ADL24812.1| ribonuclease, Rne/Rng family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 511 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 130/484 (26%), Positives = 238/484 (49%), Gaps = 2/484 (0%) Query: 80 QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 + P+ R A++++ +A+ E V+ + G++ + A E+ + Sbjct: 13 KTPYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAAFIDIGLEKAGFL 72 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 + + N + +D ++ I E+++ Q ++VQ+VKE KGA +TT+ Sbjct: 73 HQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKEPISTKGARLTTH 132 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 LS AGR+ V MP + +S++ +PV R+ K++ R L+ +G I+RT G + ++ Sbjct: 133 LSFAGRFLVCMPG-ANFVGVSKRERDPVKRREFKKVVRRLKGR-DVGYIVRTNGLNESEF 190 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 EI + L W+ + +YEE + I++ +R+ + + + + Y Sbjct: 191 EINKQMRELESKWEQTKYNFETMPPETCIYEESDSIEQTVREYFGDNTDYVYIDNRDEYF 250 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +D++K+L P V+ + +F IE Q +V LP G ++I QTEAL Sbjct: 251 ALRDYLKVLSPDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGGNLVIEQTEAL 310 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 VSIDVN+G L+TNL+A EIA+QLRLRD+ GLI++DFIDME ++ +V Sbjct: 311 VSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFIDMETDEDREAV 370 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 ++ ++++++D+A + IS FGL+E++R+R+R +++ T+ C C G+G I + S Sbjct: 371 YQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTECCPVCNGSGRIATLEST 430 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 I R + + + + + V+ L E + + I++V Sbjct: 431 LGMIDRWLARAHTKGRLREVTLVVSAPVIDVLCKDLNRMFNYLEYKHNIKISLVEDEYAH 490 Query: 560 DKLF 563 F Sbjct: 491 INQF 494 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%) Query: 1 MANK----MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56 MANK +LI + E R+ ++ D + EL E ++ GNIY V +V P+L+A Sbjct: 1 MANKCKRGILISKT-PYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKA 59 Query: 57 AFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 AF+D G + GFL Q DR LL+ D + +++ ++ Sbjct: 60 AFIDIGLEKAGFLH---------QEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEG 110 Query: 117 DH 118 Sbjct: 111 QE 112 >gi|189466528|ref|ZP_03015313.1| hypothetical protein BACINT_02903 [Bacteroides intestinalis DSM 17393] gi|224540250|ref|ZP_03680789.1| hypothetical protein BACCELL_05163 [Bacteroides cellulosilyticus DSM 14838] gi|189434792|gb|EDV03777.1| hypothetical protein BACINT_02903 [Bacteroides intestinalis DSM 17393] gi|224518129|gb|EEF87234.1| hypothetical protein BACCELL_05163 [Bacteroides cellulosilyticus DSM 14838] Length = 524 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 125/434 (28%), Positives = 222/434 (51%), Gaps = 4/434 (0%) Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 S+ + + + + ++ + +K Q ++VQIVKE KG +T+ +S AGRY Sbjct: 89 SDKKKLPQITKATILPDLEKDGTVANTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRY 148 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 VL+P K + ++ + + P GVI+RT + E+ + + Sbjct: 149 LVLIPFNDKVSVSQKIKSSEERAR--LKQLLMSIKPKNFGVIVRTVAEGKRVAELDGELK 206 Query: 267 YLMRLWDNVRELALNS-VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L++ W++ + P L+YEE + +RDL+ I V+ E + E KD++ Sbjct: 207 VLLKHWEDAVTKIQKATKFPTLIYEETSRAVGLLRDLFNPSFENIHVNDEAVFHEIKDYV 266 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 L+ P A IV+ Y+ PI+ GI Q+ S V+ S Y+II TEAL +DVN Sbjct: 267 TLIAPDRAGIVKLYKGQLPIYDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVN 326 Query: 386 SGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 SG T+ ++ AL+ NL AA+E+ARQLRLRD+ G+IVVDFIDM E +N + + +++ Sbjct: 327 SGNRTKNANGQEANALEVNLGAADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMC 386 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 +++KDRAR + +S FGL++++RQR+R ++ +TT++C C G G I+S ++ Sbjct: 387 ANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLE 446 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 ++ + + +H H + Y+ + +++ ++G I ++ +LA + Sbjct: 447 SKIDYLVNKLKIKKFSLHIHPYIAAYINQGLVSLKRKWQMKYGFGIKIIPSQKLAFLEYV 506 Query: 565 IEKGSPVQALVNTG 578 + + Sbjct: 507 FYDPQGEEIDMKEE 520 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 7/101 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D + EL E + GN+YL ++ ++ P L A FVD Sbjct: 1 MTSELVVDV-QPKEVSIALLEDKSLVELQSEGRNLSFSVGNMYLGRIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNI 95 G + FL +L++ P Y + SD++ L + + Sbjct: 60 VGYEKDAFLHYLDLGPQFNSLEKYVKQTLSDKKKLPQITKA 100 >gi|269792810|ref|YP_003317714.1| ribonuclease, Rne/Rng family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100445|gb|ACZ19432.1| ribonuclease, Rne/Rng family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 496 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 209/394 (53%), Gaps = 7/394 (1%) Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 + +LVQ+ K R KGA VT LSL GRY VL+P K +S++I + + + Sbjct: 81 PHPGEEILVQVAKTARKGKGARVTPKLSLPGRYLVLVP-EGKDVGVSKRIEDEEE-RQRL 138 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 ++ P G G+I+RT ++K D E LM LWD++ A S AP L+Y + Sbjct: 139 KVLGREVRPQGFGIIVRTVAQGCHMDQLKSDVEDLMDLWDSICAAASRSPAPCLLYRDRG 198 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGIE 352 L+ R +RD ++E++V + ++ + + V Y P+F G+E Sbjct: 199 LLDRVLRDELDHQVAEVVVDNPEELDLVREMVGRFFSQGKGPEVTLYRGRTPVFEVYGVE 258 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 +++ + +V LPS Y++I+Q EAL IDVN+G+ T ++ T L+TNLEAAEEIAR Sbjct: 259 REMELALERKVWLPSGAYLVIDQAEALTVIDVNTGKFTGSKDLKSTILKTNLEAAEEIAR 318 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 QLRLR + G++VVDFIDM+++ + + + + +E LK DR R +V +++ GL+E++R+R Sbjct: 319 QLRLRAIGGIVVVDFIDMDDESHRQILLETTRELLKGDRQRAKVFGVTSLGLVELTRRRT 378 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 R + T+ C C G+G + + + A+ + R+V + ++V + + + Sbjct: 379 RGDLKSVMTRGCPMCGGSGLVEREDACAMRLKRAVRKMTGDSPPEALLVAANPQLARHC- 437 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 ++ +E F I + L F +E Sbjct: 438 ---AEYLLAWEEEFRCRILLREDQSLQWGRFKVE 468 Score = 99.7 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 3 NKMLIDASHVEETRVVVLR-DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ++ + EE+RV VL R+ ++ E ++Q G IY A+V V P + AAFV+ Sbjct: 5 KTIVANTLESEESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNL 64 Query: 62 GGNRHGFLPFLEIH 75 G R+GFL ++ Sbjct: 65 GDGRNGFLYLEDLG 78 >gi|302346649|ref|YP_003814947.1| S1 RNA binding domain protein [Prevotella melaninogenica ATCC 25845] gi|302151051|gb|ADK97312.1| S1 RNA binding domain protein [Prevotella melaninogenica ATCC 25845] Length = 523 Score = 236 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 130/497 (26%), Positives = 229/497 (46%), Gaps = 16/497 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128 P ALL++ + + E + G++ + D E A + Sbjct: 11 PKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFLHY 70 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++ S V S+ + + ++ +Q ++ Q ++VQIVKE Sbjct: 71 LDLGSQFNSYAKYLKQVQSDRKKLYPIQKATRLPDLQKDGTVQNTLQVGQEVMVQIVKEP 130 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 KG +T +S AGR+ VL+P K S+ + + + P GVI Sbjct: 131 ISTKGPRLTGEISFAGRFLVLIPFGHKVSVSSKIKSGEERAR--LKQLIQSITPKNFGVI 188 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307 +RT + E+ + + L+ W+ + P LV+EE +RDL+ Sbjct: 189 VRTVAEGKRVAELDAEMKVLLSRWNEAITRLQKTQERPQLVFEETGRAVAMLRDLFNPTY 248 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 I V+ ++ + ++ L+ P A IV++Y PIF + Q+ S + Sbjct: 249 ENIYVNDDEICTAVRHYVSLIAPEKAGIVKKYTGKVPIFDNFDVTKQIKSSFGKTINYGH 308 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 Y+II TEA+ +DVNSG T+E E AL TNL AA+E+ARQLRLRD+ G+IVVDF Sbjct: 309 GCYLIIEHTEAMHVVDVNSGNRTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDF 368 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R + + C C Sbjct: 369 IDMNLAEDRQMLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVDENCPTC 428 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G+G IRS + R ++ + + +H H V Y+ + +++ ++G Sbjct: 429 FGSGKIRSSILFTDQLERKIDRLVNKVGVKKFYLHVHPYVAAYINKGLISLKRKWQMKYG 488 Query: 548 VSINVVIGIELADKLFY 564 +N++ +LA + Sbjct: 489 WGVNIIPSQKLAYLQYE 505 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D R+ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEVIIDA-QPKEISIALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97 G R FL +L++ Y + SDR+ L + Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPIQKATR 102 >gi|323703603|ref|ZP_08115247.1| ribonuclease, Rne/Rng family [Desulfotomaculum nigrificans DSM 574] gi|323531436|gb|EGB21331.1| ribonuclease, Rne/Rng family [Desulfotomaculum nigrificans DSM 574] Length = 559 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 148/513 (28%), Positives = 250/513 (48%), Gaps = 11/513 (2%) Query: 89 LLKESNIAQTDSEAVA--DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 L + A+ + VA +D +V I + V I E + +A D+ Sbjct: 2 LKEIVINARDEETRVAVLEDKIPVEVYIERSPNQRLVGNIFKGRVENVLPGMQAAFVDIG 61 Query: 147 SN------VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 VED + + + I +++K Q ++VQIVKE G KG VTT++ Sbjct: 62 LEKNAFLYVEDAQPSRNPEAGQSSTLNINIGDILKQGQEIIVQIVKEPIGTKGPRVTTHI 121 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 +L GRY VLMP R + + + G P GMGVI+RT + E Sbjct: 122 TLPGRYLVLMPTVDYVGISRRIESEKERER--LKELAGRVKPEGMGVIVRTVAEGVCEEE 179 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 +D L +LW ++ A N AP+L++ + L++R +RD++ +D+ + + Y + Sbjct: 180 FNQDIVLLTKLWRKIQSRAANCSAPNLLHRDLELVQRMLRDVFSEDVDRLTLDSRSEYEK 239 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 + + ++ P ++ ++ IF GI V+L+ + V L Y++I+Q EAL Sbjct: 240 VLEILDIIDPKL-KLKVFLDERENIFEDYGISVELERALKRRVWLKCGAYLVIDQAEALT 298 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +IDVN+G+ +EDT L+TNLEAA EIARQLRLR+L G+I++DFIDM E+ + V Sbjct: 299 AIDVNTGKFVGSTNLEDTVLRTNLEAAVEIARQLRLRNLGGIIIIDFIDMVEEAHRNQVL 358 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L+E +KKD+ + + I+ GL+EM+R+++R S+ E K C YC+G G + S+ +V+ Sbjct: 359 ATLEEEIKKDKTKTNILGITQLGLVEMTRKKVRPSLAEVVQKPCPYCEGRGKVLSEETVS 418 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 + I + + Q A I+V + V L+ + E E + G ++ + Sbjct: 419 IHIKTQIYQLARQTMADTILVEANPMVAARLIGAGGVNLRELEQKTGKNLYIRGNATHHL 478 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + I+ S +++ V + Sbjct: 479 EQVTIKPLSGQDEVISQTLPVKPGEIIEVKVEE 511 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I+A EETRV VL D E+ E +++ GNI+ +V V P +QAAFVD Sbjct: 1 MLKEIVINARD-EETRVAVLEDKIPVEVYIERSPNQRLVGNIFKGRVENVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL + P Sbjct: 60 IGLEKNAFLYVEDAQP 75 >gi|146299292|ref|YP_001193883.1| ribonuclease [Flavobacterium johnsoniae UW101] gi|146153710|gb|ABQ04564.1| ribonuclease, Rne/Rng family [Flavobacterium johnsoniae UW101] Length = 543 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 129/563 (22%), Positives = 229/563 (40%), Gaps = 64/563 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 NK LI S E +L+D ++ EL E E G+I++AK+ + L AAFV+ G Sbjct: 31 NKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNVG 90 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 + FL + ++ P+ + + +K V+ G + + + + Sbjct: 91 FEKDAFLHYHDLGPN-----LASQLKFIKL--------------VSAGKLKDFSLKTFQF 131 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 I T+ S + V G ++ + +R + Sbjct: 132 EKEIDKDGIITDILSANQSVLVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRVSISQ 191 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 +I ++ ++ + + G I R + + L++ + L Sbjct: 192 KIEDKKEKDRLKKLVLSIKPKGF-----------GVIVRTVAEGKNVAELEKDLQNLLGR 240 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 + + + P V E N +RD+ Sbjct: 241 WS-----------------------------AMCKKLPTAHHPSKVLGELNRASSILRDV 271 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQT 361 + S I + E+ Y + K++++ + PS IV+ + PIF + IE Q+ + Sbjct: 272 FNDTFSGIQIDDEELYHQTKEYLQEIAPSKQSIVKFYQSNDTPIFEKYNIERQIKTSFGR 331 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V++ Y+II TEAL IDVNSG RS + EDTA++ N+ AA EIARQLRLRD+ Sbjct: 332 TVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLRLRDMG 391 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDM +N + + L+E + D+A+ ++ S FGL++++RQR+R V T Sbjct: 392 GIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPEVNIKT 451 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + K G I + + I +E L + ++++TH V YL + Sbjct: 452 REEDPN-KVNGEIEAPILIIDKITSDLERLLKTHN--KVVLNTHPFVAAYLSKGFPSLRS 508 Query: 541 EYEARFGVSINVVIGIELADKLF 563 ++ + ++ + Sbjct: 509 KWFFEHKKWVKIIPRDAYTYLEY 531 >gi|332885921|gb|EGK06165.1| hypothetical protein HMPREF9456_00039 [Dysgonomonas mossii DSM 22836] Length = 524 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 130/500 (26%), Positives = 229/500 (45%), Gaps = 11/500 (2%) Query: 73 EIHPDYYQIPFSDRQALLKESNIAQTDSEA-------VADDVTHGDVTIPNDHSLEEVAP 125 ++ P+ I + + L++ + S A + G D ++ A Sbjct: 8 DVQPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVDIGYKKDAF 67 Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185 + + +S+ +++ + S + + I +V+K Q +LVQI Sbjct: 68 LHYLDLGAQFKSVDKFYKQALADKKKFPNISKMKMEADIDKNGSISDVLKPGQEILVQIA 127 Query: 186 KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245 KE KG +T LSLAGR+ V++P K + + + P Sbjct: 128 KEPISTKGPRLTAELSLAGRFLVVIPFNDKVSVSQKIKSKEERAR--LRQLIQSIKPKNF 185 Query: 246 GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK 305 GVI+RT + ++ + + L++ W++ + P LV+EE I +RD++ Sbjct: 186 GVIVRTVAEGKKVADLDTELKTLVKRWEDNLPKIQKNKLPTLVFEETGRIVALLRDIFNP 245 Query: 306 DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTL 365 EI V+ + KD++ + P IV+ Y+ PIF + Q+ +L VT Sbjct: 246 TFQEIHVNDLDTCNQIKDYISFIAPDKKNIVKSYDGGLPIFDNFNVTKQVKALFGKTVTF 305 Query: 366 PSRGYVIINQTEALVSIDVNSG--RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 + Y+I+ TEAL +DVNSG E E+ A + N AAEEIARQLRLRD+ G+I Sbjct: 306 RNGAYLILEHTEALHVVDVNSGNRSKNPEAGQENNAWEVNSAAAEEIARQLRLRDMGGII 365 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 V+DFIDM E ++ + K++E + DRA+ + +S FGL++++RQR+R + STT+ Sbjct: 366 VIDFIDMTEGEHKAQLMAKMQELMANDRAKHNILPLSKFGLMQITRQRVRPEMEISTTEA 425 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G IR ++ + + N ++ H V ++ + +++ Sbjct: 426 CPTCFGKGEIRPSILFTDTLRMKISYLVKDLKVKNFKLYIHPYVAAFINKGFPSLKWQWK 485 Query: 544 ARFGVSINVVIGIELADKLF 563 R+G+ + ++ LA + Sbjct: 486 WRYGMGVKIIPNQNLAFLEY 505 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D E + VL D ++ EL E GNIY KV ++ P L AAFVD Sbjct: 1 MNSELIVDV-QPNEVSIAVLEDKKLVELQKEGRDASYAVGNIYAGKVKKLMPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119 G + FL +L++ + + +QAL + + D+ +G ++ Sbjct: 60 IGYKKDAFLHYLDLGAQFKSVDKFYKQALADKKKFPNISKMKMEADIDKNGSISDVLKPG 119 Query: 120 LEEVAPIANFSQETEEESIISA 141 E + IA T+ + + Sbjct: 120 QEILVQIAKEPISTKGPRLTAE 141 >gi|154508999|ref|ZP_02044641.1| hypothetical protein ACTODO_01516 [Actinomyces odontolyticus ATCC 17982] gi|153798633|gb|EDN81053.1| hypothetical protein ACTODO_01516 [Actinomyces odontolyticus ATCC 17982] Length = 936 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 152/597 (25%), Positives = 257/597 (43%), Gaps = 45/597 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 289 GEVNWDAVGMEGKPRRIEAALKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPGG 348 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K VP+G GVI+RTA T+ +I+ D L R W+ Sbjct: 349 SMMG-ISRKLPDKERARLKK--ILKAVVPSGSGVIVRTAAEGATEEQIRDDVARLTRQWE 405 Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + N+ + P L+ E L R +RD++ +D S++++ G Y K+++ L P Sbjct: 406 DIEKKRTNTKSAPTLLRGEPELAVRVVRDIFNEDFSKLVIEGRDTYATVKEYVDELSPEL 465 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + V Q+ +F I+ QL +V LPS G +II++TEA+ IDVN+G+ Sbjct: 466 SDRVEQWVGTEDVFRAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKFIGA 525 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++++DF+DM + N V ++L E L +DR Sbjct: 526 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 585 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL------- 504 R QV I++ GL++M+R+R+ ++E+ + C C+G G+I Q V S Sbjct: 586 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSSSCEACEGRGFIVHQHPVETSGAEQPSKGS 645 Query: 505 ------------RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 R +E+ A + + A + R +++ Sbjct: 646 KGSKKQQKKAEPRRIEDNADHERAKEALSAIAAASTRKEEESAAAEPAPTKKRRTRAVST 705 Query: 553 VI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA--------L 603 + E + +P + + ++ A + V + Sbjct: 706 EVKEPEASSLEQVAAPEAPAEESASKPAAEKAEESATKRPRRRRRVAESAPLPELPVRID 765 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 LP P S E + E + + RRR + A + Sbjct: 766 LPEPVDHSDEPAAPTKDASEIQLPEHREKAPATRRRASRKAATASSEEPAEAP------- 818 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 P + + + PVS E ++ +KTR + Sbjct: 819 -----APKKTRRRVTAQTAVPEVQTDETPATAPVSASVAEETSFQEAAAPRKTRRRR 870 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ +L D + E + + GNIYL +V V PS++AAFVD G R+ L E++ Sbjct: 233 QIAILEDGLLVEHYVARRTQSSMVGNIYLGRVQNVLPSMEAAFVDVGRGRNAVLYAGEVN 292 Query: 76 PD 77 D Sbjct: 293 WD 294 >gi|312135810|ref|YP_004003148.1| ribonuclease, rne/rng family [Caldicellulosiruptor owensensis OL] gi|311775861|gb|ADQ05348.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor owensensis OL] Length = 571 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 143/476 (30%), Positives = 231/476 (48%), Gaps = 12/476 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162 +D ++ I + S V I E + +A N N G Sbjct: 20 EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGREKNAFLYLGDVNRLEFG 79 Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+PNT Sbjct: 80 DTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVTTNITLPGRYLVLLPNTEYVGVS 139 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 R + + + P GMG+I+RTA +++ +K + E+L +W +R+ + Sbjct: 140 KRIESEEERLR--LKEIACRLKPEGMGLIVRTAAEGKSEEILKSELEFLKNMWKKIRQKS 197 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 S AP L+Y++ +L+ +A+RD++ + +++ K Y + +F+ PS V + Sbjct: 198 CQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKVEYF 256 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 IF IE +L V L S GY++I++TEAL IDVN+G+ + + +T Sbjct: 257 NLATNIFEYFQIEQKLAKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVAETI 316 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+ ++ + V LKE+LK+D+ + V I Sbjct: 317 LKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPEHQKIVLDALKEALKRDKTKTVVVDI 376 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 + GL+EM+R+++R + C YC+G G I S SVA +L+ +E Y Sbjct: 377 TPLGLVEMTRKKVRQRLSCVMQSSCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVEDKF 436 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGV--SINVVIGIELADKLFYIEKGSPVQA 573 V ++ V L + I E E ++ I V + F I Sbjct: 437 FVEMNTKVCEILRKGEIDRIKELEQKY--KKKIYVKASSNIHINKFTICPVKDEDH 490 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S +TRV VL D + E+ E E + I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G ++ FL +++ +YY+I Sbjct: 60 IGREKNAFLYLGDVNRLEFGDTDEYYEI 87 >gi|303237107|ref|ZP_07323677.1| S1 RNA binding domain protein [Prevotella disiens FB035-09AN] gi|302482494|gb|EFL45519.1| S1 RNA binding domain protein [Prevotella disiens FB035-09AN] Length = 523 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 133/497 (26%), Positives = 230/497 (46%), Gaps = 16/497 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128 P ALL++ + + E + + G++ I D E A + Sbjct: 11 PKEISIALLEDKRLVEYQREPRDANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFLHY 70 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++ S V S+ + + ++ IQ +++ Q ++VQ+VKE Sbjct: 71 LDLGSQFNSFAKYLKQVQSDRKRLFPLQKASKLPILQKDSSIQNILEVGQEVMVQVVKEP 130 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 KG +T +S AGRY VL+P K ++ + + + P GVI Sbjct: 131 ISTKGPRLTGEISFAGRYLVLIPFGDKVNVSTKIKSGEERAR--LKQLIQSIRPKNFGVI 188 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307 +RT + E+ + + L W+ + P L++EE +RDL+ Sbjct: 189 VRTVAEGKRVAELDAEMKVLFNRWNEAITKVQKTQERPQLIFEETGRAVGMLRDLFNPTY 248 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 I V+ E+ K ++ L+ P A IV++Y PIF + Q+ S + Sbjct: 249 ENIYVNDEEICTAVKSYVSLIAPEKADIVKKYNGKLPIFDNFDVTKQIKSSFGKTINYGH 308 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 Y+I+ TEA+ +DVNSG T+E E AL TNL AA+EIARQLRLRD+ G+IVVDF Sbjct: 309 GCYIIVEHTEAMHVVDVNSGNRTKEKGQEQNALDTNLGAADEIARQLRLRDMGGIIVVDF 368 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R + + C C Sbjct: 369 IDMNLAEDRQMLYERMCKAMQKDRARHNILPLSKFGLMQITRQRVRPVMDVDVAEECPTC 428 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G+G IRS + R +++ + + +H H V Y+ + +++ ++G Sbjct: 429 FGSGKIRSSLLFTDLLERKIDQLTNKIGINKFYLHVHPYVAAYINEGFISLKRKWQMKYG 488 Query: 548 VSINVVIGIELADKLFY 564 + VV +LA + Sbjct: 489 FGVKVVPSQKLAFMQYE 505 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D R+ E E GNIY+AKV ++ P L A FVD Sbjct: 1 MTSEIIIDA-QPKEISIALLEDKRLVEYQREPRDANFSVGNIYIAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQ 97 G R FL +L++ Y + SDR+ L ++ Sbjct: 60 VGYERDAFLHYLDLGSQFNSFAKYLKQVQSDRKRLFPLQKASK 102 >gi|146296322|ref|YP_001180093.1| ribonuclease [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409898|gb|ABP66902.1| RNAse G [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 571 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 138/507 (27%), Positives = 240/507 (47%), Gaps = 14/507 (2%) Query: 98 TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGG 155 AV +D ++ I + V I E + +A N N G Sbjct: 13 ETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNIGQDKNAFLYLGD 72 Query: 156 SPEDVPKKFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+PN Sbjct: 73 INRLEFGDTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVTTNITLPGRYLVLLPN 132 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLM 269 T R + + + P GMG+I+RTA +++ ++ + E+L Sbjct: 133 TDYIGISKRIEFEEERTR-----LKEIACKIKPDGMGLIVRTAAEGKSEEVLRNELEFLR 187 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 LW +R+ + S AP L+Y++ +L+ +A+RD++ + +++ K Y + +F+ Sbjct: 188 NLWQKIRQKSKES-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSTYA 246 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 PS V + IF IE +L + L S GY++I++TEAL IDVN+G+ Sbjct: 247 PSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEALTVIDVNTGKF 306 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 ++ + +T L+TNLEAA EIARQ+RLRD+ G+I++DFIDM+ ++ + V LKE+LK+ Sbjct: 307 VGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLVLDALKEALKR 366 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 D+ + V I+ GL+EM+R+++R + C YC+G+G I S +V L +L+ +E Sbjct: 367 DKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETVGLKVLKEIEW 426 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 Y V ++ V L + I E + ++ + + + F I Sbjct: 427 YFKNRVEEKFFVEINTKVCEVLRKGEVDRIKELQEKYKKKVYLKASSNIHINKFTICPVK 486 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIEC 596 + + + ++ + + Sbjct: 487 DEDHYMALCGALSEGDEVLAFVEEEDK 513 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S ETRV VL D + E+ E ++ I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSFG-ETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G +++ FL +I+ +YY+I Sbjct: 60 IGQDKNAFLYLGDINRLEFGDTDEYYEI 87 >gi|189485543|ref|YP_001956484.1| ribonuclease G [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287502|dbj|BAG14023.1| ribonuclease G [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 488 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 147/479 (30%), Positives = 255/479 (53%), Gaps = 6/479 (1%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + +K+ I E + E I N + ++I+ A N + Sbjct: 11 EKTVKKEIIVNRTFEESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLF 70 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 ++ +G + V K + +IK Q ++VQ+ KE NKGA VT +SL GR Sbjct: 71 VDIGFGRGAYLD-VCDILKEHRSKKNMIKAGQDIMVQVYKEPIHNKGAKVTMAISLTGRL 129 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 V MP S +S+ I + + LK + L+ G+I+RT TK EIK + + Sbjct: 130 LVYMPF-SNNIGVSKNIKDKHEYNRLKSMTAELKKDISGGIIIRTKAEKATKAEIKNEIK 188 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 YL+RLW ++ E ++ L++++ L+ + + D + D+ + + +K ++ DF++ Sbjct: 189 YLIRLWASITERFDDAKPMSLIHKDLGLVFQTVIDYFSDDVIFMRIDSQKELKDVTDFVE 248 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 +++P + + Y+D PIF + GIE ++ L +V L S GY+II + E+L +IDVNS Sbjct: 249 IVLPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQEAESLCAIDVNS 308 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 G+ T + EDTA+ TNLEAAEEIARQLRLR++ G+IV+DFIDM++ N R V + L+++ Sbjct: 309 GKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASNRRKVLETLRKA 368 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 K D+A++++ I+ GL+EM+R+R R S+ +C C G ++ S+ S+ +++ Sbjct: 369 TKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLSKESIFINVCDE 428 Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +++ + I + + DV+ Y + +K E FGV ++ EL + + I Sbjct: 429 IKQLKIDGYDGRIKIKLNIDVIEYFMKKK----ARLEELFGVEFDIEASTELLREEYKI 483 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +++++ + EE+RV +L + ++ L E ++I NIY +V + P+L + FVD G Sbjct: 16 KEIIVNRTF-EESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDIG 74 Query: 63 GNRHGFLPFLEI 74 R +L +I Sbjct: 75 FGRGAYLDVCDI 86 >gi|307566014|ref|ZP_07628472.1| S1 RNA binding domain protein [Prevotella amnii CRIS 21A-A] gi|307345202|gb|EFN90581.1| S1 RNA binding domain protein [Prevotella amnii CRIS 21A-A] Length = 523 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 118/423 (27%), Positives = 211/423 (49%), Gaps = 3/423 (0%) Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 V S+ + + + ++ ++ V++ Q +LVQ+VKE KG +T +S Sbjct: 85 KQVQSDRKRLYPIQKAIILPDIEKDGTVKGVVQVGQEVLVQVVKEPISTKGPRLTGEISF 144 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 AGRY VL+P +K S+ + + + P VI+RT + E+ Sbjct: 145 AGRYIVLLPFGNKISVSSKIKSGEERAR--LKQLIRSITPKNFSVIVRTVAEGKRVAELD 202 Query: 263 RDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + + L++ W++V + P LVYEE IRDL+ I V+ + Sbjct: 203 AEMQILLKRWNDVITKVQKTQERPQLVYEETGRAVAMIRDLFNPTYENIYVNDKDICTAV 262 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + ++ ++ P A IV+QY PIF I Q+ S + Y+II TEA+ Sbjct: 263 RHYVSMIAPEKASIVKQYTGKLPIFDNFDITRQIKSSFGKTINYGHGCYIIIEHTEAMHV 322 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSG +E E AL NL AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + + Sbjct: 323 VDVNSGNRAKEKGQEQNALDANLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQMLYE 382 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++ +++++DRAR + +S FGL++++RQR+R ++ + C C G G +R+ Sbjct: 383 RMSKNMQQDRARHNILPLSKFGLMQITRQRVRPAMDVDVDETCPTCFGTGKVRASILFTD 442 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + ++ + ++ +H H V Y+ + +++ ++G+ ++V+ +LA Sbjct: 443 QLEHKIDRLVNKFGVKKFYLHVHPYVAAYINKGFISLKRKWQLKYGIGVHVIPSQKLAYL 502 Query: 562 LFY 564 + Sbjct: 503 QYE 505 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D R+ E E GNIY+AKV ++ P L A FV+ Sbjct: 1 MTSEIIIDV-QEKEISIALLEDKRLVEYQREPREANFSVGNIYMAKVKKLMPGLNACFVN 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104 G R FL +L++ Y + SDR+ L Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKRLYPIQKAIILPDIEKD 109 >gi|295136314|ref|YP_003586990.1| ribonuclease G [Zunongwangia profunda SM-A87] gi|294984329|gb|ADF54794.1| ribonuclease G [Zunongwangia profunda SM-A87] Length = 512 Score = 234 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 126/564 (22%), Positives = 231/564 (40%), Gaps = 64/564 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S +L+D ++ EL+ + + G+I +AK+ + P L AAFV+ Sbjct: 1 MDKELII-RSESSAVDFALLKDGKLIELNKDEDDNNFNVGDIMIAKIRKAVPGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + GFL + ++ P S +K + + ++ + D+ + Sbjct: 60 VGYTKDGFLHYHDLGPQ-----VSSLLKFIKRVSTGKLKDYSLKNFTFEKDIDKNGSITD 114 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + Q +E +Y + NR + Sbjct: 115 VLKSNQSLLVQIVKEPISTKGPRISSE--------------LSLPGRYIVLVPFSNRISV 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I +E ++ + + G ++ Sbjct: 161 SQKIESKEEKDRLKRLVKSIKPKGFGVIVRT----------------------------- 191 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + E+ +D + LM W + + P V E + +R Sbjct: 192 -----------VAEGKKVAELDKDLQNLMGRWTAMCKKLYKPHYPSKVLGELHRASSLLR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I V E Y + KD++ + PS IV+ ++ PIF + GIE Q+ + Sbjct: 241 DVFNDTFTSITVDDETLYTQIKDYVSEIAPSKESIVKLHQSNVPIFEKFGIERQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEA+ IDVNSG RS + EDTAL+ NL +A EIARQLRLRD+ Sbjct: 301 RTVSMSKGAYLVIEHTEAMHVIDVNSGNRSNKSKNQEDTALEVNLISATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM + +N +++ LK+ + DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMGKAENRKTLFDHLKQEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + G G I + + I ++ E L++ I + TH + +L + Sbjct: 421 TREENP--NGDGEIEAPIILIQKI-KADLERLIKKNHKKITLSTHPFISAFLTKGFPSPR 477 Query: 540 VEYEARFGVSINVVIGIELADKLF 563 ++ + ++ + Sbjct: 478 SQWFFDHKRWVKIIPRDAYTYLEY 501 >gi|290960391|ref|YP_003491573.1| hypothetical protein SCAB_60141 [Streptomyces scabiei 87.22] gi|260649917|emb|CBG73033.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 1369 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 152/613 (24%), Positives = 263/613 (42%), Gaps = 17/613 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + S V + + S+ +A D+ V G + Sbjct: 633 EDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 692 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 693 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 751 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W+++++ + N Sbjct: 752 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKNG 809 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S++IVSGE+ + ++ + P A ++++ Sbjct: 810 NAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGEEAWETIHGYVSHVAPDLAERLQKWTSE 869 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 870 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 929 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 930 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 989 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++M+R+R+ +LES ++ C +C G G I + A + Sbjct: 990 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMDQPTAVGGGGKRRKRGRGGAEHEHD 1049 Query: 522 HTHSDVVLYLLNQKRATIVEYE---ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H H + A VE A V+ V + L F ++ Sbjct: 1050 HEHVS------GHETAEPVETTTEQAEAEVAAEVAEPVALPAPEFEPDEELYSSVAEAEA 1103 Query: 579 HKVGSDSQAPSYDKNIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 S+ + + A + SE E V Sbjct: 1104 AVGRGRSRRRATRRASAPSGAPKSRATVTGTVSEDRAPKPREAAEAEPVAVEDPVVETPV 1163 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 PA + + + + S ++ E + P Sbjct: 1164 VEAPAAESTEDAAPKGRTRRRATRKVSAPAGTPAGAAVEDTVVTVSEPVVHEATATATEP 1223 Query: 697 VSTPEMESSNSSS 709 E +++ Sbjct: 1224 AVADEAPQPEAAA 1236 Score = 92.7 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAF+D G Sbjct: 615 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIG 674 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 675 KGRNAVLYAGEV 686 >gi|111221361|ref|YP_712155.1| ribonuclease E-like protein [Frankia alni ACN14a] gi|111148893|emb|CAJ60572.1| Ribonuclease E homolog [Frankia alni ACN14a] Length = 1373 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 125/343 (36%), Positives = 206/343 (60%), Gaps = 4/343 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++V+K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 827 GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPD- 885 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + LK I + + G GVI+RTA ++ E++RD E L W+ Sbjct: 886 GQNAGISRKLPDTERAR-LKSILKKITPEDG-GVIVRTAAEGASEAELERDIERLAAQWE 943 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A + AP L+Y E +L+ R IRD++ +D +E++V G ++++ + P Sbjct: 944 DIQRRAKKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSGEAATIEEYIDAVAPDLR 1003 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +R+Y +F ++ QL +V LPS G ++I++TEA+ IDVN+G+ T + Sbjct: 1004 PRIRRYTGSGDVFVDYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 1063 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 1064 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 1123 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 R QV +++ GL++M+R+R+ +LE+ ++ C +C G G + Sbjct: 1124 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCVHCNGRGVLIH 1166 Score = 95.4 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +M I + T++ VL D+ + E GN+YL +V V S++AAFVD Sbjct: 758 ERRM-IVRHAGDRTQIAVLEDSVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDI 816 Query: 62 GGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 817 GKGRNAVLYAGEVNYD 832 >gi|288574646|ref|ZP_06393003.1| ribonuclease, Rne/Rng family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570387|gb|EFC91944.1| ribonuclease, Rne/Rng family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 500 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 128/494 (25%), Positives = 239/494 (48%), Gaps = 4/494 (0%) Query: 92 ESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED 151 ++ A D V I L E+ + ++ E + V+ + Sbjct: 2 ADRDSEIRIIANTVDPEEMRVAIIEGDRLRELFIERMWERQKSGEIYKARVESVLPGMNA 61 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + +K ++VQ+VK R NKGA VTT LSL GR+ V++P Sbjct: 62 SFVNLGDGRNAFLYLNDAKGYHLKPGMDVVVQVVKTARKNKGARVTTRLSLPGRFLVIVP 121 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 R + + + L+++AR L +G+I+RTA + ++ DF+ LM+L Sbjct: 122 GGQDVGVSKRIVEDKERLR-LRDVARQLSKREDIGIIIRTAAEGQDSEILENDFDSLMQL 180 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W V A AP L+Y + L R +RD + D+ EI++ E+ + +++++ Sbjct: 181 WREVAHEADVQTAPCLLYRDPGLTGRVLRDEFSGDVFEIVIDNEEEKTKVEEWLRTYGGQ 240 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V + P+F IE ++ + +V L S Y++I QTEA+ IDVN+G+ Sbjct: 241 VMPSVSLHRSNTPVFEFYDIEKEVAAALDQKVWLRSGAYIVIEQTEAMTVIDVNTGKFVG 300 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 + + T LQTNLEAA+EIA QLRLR + G+++VDFIDME +++ ++ +++++ L DR Sbjct: 301 DTDLRHTVLQTNLEAADEIAWQLRLRAIGGIVIVDFIDMECEEDKTTLVQRMEQLLADDR 360 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 R +V +++ GL+E++R+R R+ V T+ C +C + + SVA+++ R + + + Sbjct: 361 CRSKVFGVTHLGLVEITRKRARTDVRSILTRSCPFCGTTARVLKEDSVAVTLKRFIRKIV 420 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + +++ +S + Y+ + +E F +I + + + F ++ Sbjct: 421 RSNKSEAMLLECNSRIAGYIAE---TYLSVWEEAFERAIALCAVPSMDWEKFRLDYQGSR 477 Query: 572 QALVNTGHKVGSDS 585 + L + ++ Sbjct: 478 EGLEKRVAQRQEEA 491 Score = 98.9 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 +++ + EE RV ++ +R+ EL E ++Q G IY A+V V P + A+FV+ G Sbjct: 9 RIIANTVDPEEMRVAIIEGDRLRELFIERMWERQKSGEIYKARVESVLPGMNASFVNLGD 68 Query: 64 NRHGFLPFLE 73 R+ FL + Sbjct: 69 GRNAFLYLND 78 >gi|289641535|ref|ZP_06473697.1| ribonuclease, Rne/Rng family [Frankia symbiont of Datisca glomerata] gi|289508630|gb|EFD29567.1| ribonuclease, Rne/Rng family [Frankia symbiont of Datisca glomerata] Length = 909 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 127/348 (36%), Positives = 207/348 (59%), Gaps = 4/348 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++V+K+ Q ++VQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 394 GEVNYDASGLDGRPRKIEQVLKSGQSIVVQVSKDPIGHKGARLTSQVSLPGRYLVYVPD- 452 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + LK I + + G GVI+RTA ++ E+ RD L W+ Sbjct: 453 GQNAGISRKLPDTERAR-LKAILKKITPEDG-GVIVRTAAEGASEQELARDVARLSAQWE 510 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ A + AP L+Y E +L+ R IRD++ +D +E++V G +D++ ++ P Sbjct: 511 DICRKATKATAPALLYGEPDLVIRVIRDIFNEDFAELVVQGAGEATMIEDYVDMVAPDLR 570 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 VR+ P +F ++ QL + +V LPS G ++I++TEA+ IDVN+G+ T + Sbjct: 571 DRVRRQAGPVDVFDEYRVDEQLAKALERKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 630 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 631 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 690 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 R QV +++ GL++M+R+R+ +LE+ ++ CT+C G G I + Sbjct: 691 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCTHCGGRGVILHLDGAS 738 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 2 ANKMLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 +M++ +A + T++ VL D + E GN+YL +V V S++AAFVD Sbjct: 325 ERRMIVRNA--GDRTQIAVLEDGVLVEHFVTRASSWSYAGNVYLGRVQNVLASMEAAFVD 382 Query: 61 YGGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 383 IGKGRNAVLYAGEVNYD 399 >gi|38234353|ref|NP_940120.1| putative RNA-associated protein [Corynebacterium diphtheriae NCTC 13129] gi|38200616|emb|CAE50312.1| Putative RNA-associated protein [Corynebacterium diphtheriae] Length = 962 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 140/578 (24%), Positives = 243/578 (42%), Gaps = 45/578 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ +LVQ+ K+ G+KGA +TT +S AGRY V +P Sbjct: 377 GEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPIGHKGARLTTQISFAGRYLVYVPG- 435 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + VP G I+RTA + + I D L +LWD Sbjct: 436 GRTAGISRKLPAPERKR--LKEILKEVVPHDGGAIIRTAAENVSAEAIGADVNRLHKLWD 493 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 +++ A +YEE N++ + +RDL+ +D + +++ G++ + +++ + Sbjct: 494 KIQQRTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDFTSLVIDGDRAWNTVHAYVQSV 553 Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P + +++ F + Q+ +V LPS G ++I++TEA+ IDV Sbjct: 554 APDLLGRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKVWLPSGGTLVIDRTEAMTVIDV 613 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 614 NTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 673 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS- 502 E+L +DR R QV +++ GL++M+R+R+ + +LE+ C +C+G G I V Sbjct: 674 TEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFATECPHCEGRGVIIHDDPVEQRD 733 Query: 503 ----ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + +S + N H +K+ +I + ++ + Sbjct: 734 ADVAMEKSHRARNERKKNKNHTPSEHPAAAAMHEEKKKVSIEDL----VAAVVIEDDP-- 787 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 P +V T + DE + Sbjct: 788 ----------QPEPDVVPTPADDDVMDIVSAALDRAYEEDPDEPSGSDYLPLEEKPQTYA 837 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 EE R++R+ R VSDV + + + + Sbjct: 838 EAVEEFERSPRRKRKTRGN-----------SVSDVPPRKADFEKPEPQPEPEVVVEKVSS 886 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + V+ E S+ V+K Sbjct: 887 RGRRRAVRRTVVEATPEVVAPTETVESSRGRRRAVRKK 924 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 37/64 (57%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 H T+V VL D + E SE + + GNIYL +V V PS++AAF+D G R+G L Sbjct: 316 HGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLY 375 Query: 71 FLEI 74 E+ Sbjct: 376 AGEV 379 >gi|218200941|gb|EEC83368.1| hypothetical protein OsI_28778 [Oryza sativa Indica Group] Length = 1036 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 136/643 (21%), Positives = 257/643 (39%), Gaps = 94/643 (14%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I++S R+ VL D ++ EL E K + Sbjct: 415 IVINSSVCTMQRIAVLEDGKLVELLLEPIKNNNAK-----------------------RD 451 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 F + + D ++ + TD E ++ P + E Sbjct: 452 SANFSDYND-----------DSLPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEE 500 Query: 125 -------------------------------PIANFSQETEEESIISANNDVVSNVEDVK 153 + E E+ + ++V ++++ + Sbjct: 501 HMAFLPNSKINMIHSAEFESISSYDEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLS 560 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 ++ ++VQ+VKE G+KG ++ + L R+ +L+ + Sbjct: 561 SIQHALRESSDDTNGSRWSQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILV-SR 619 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 +S+KIT + + L P G + RT A + E+++D + L+ W Sbjct: 620 GNKVGVSKKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHSWEELQKDLDRLLSTWK 677 Query: 274 NVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 + E A ++ +++ ++D + + + ++V + Y E + Sbjct: 678 GIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTN 737 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 +++ + P V YE PIF IE ++D++ V L + G ++I QTEALVSID Sbjct: 738 YLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSID 797 Query: 384 VNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 VN G S + E L+ NLEAA++IAR+LRLRD+ G+IVVDFIDM + N + V + Sbjct: 798 VNGGHSMFGQGTSQEKAILEVNLEAAKQIARELRLRDIGGIIVVDFIDMTDDTNKKLVFE 857 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++K++++KDR+ V V +S GL+E++R+R+R SV ++ C C G G + + + Sbjct: 858 EMKKAVEKDRSTVGVSELSKLGLMEITRKRVRPSVTFMISEPCPCCHGIGRVEALDTSFS 917 Query: 502 SILRSVEEYLLQYTAH----------NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 I R + L ++ ++ YL + K+ + + V I Sbjct: 918 KIEREICRRLAASGHKSDPEKPKSWPRFVLRVDHEMCTYLTSGKKTKLGLLSSSLKVWIL 977 Query: 552 VVIGIELADKLFYI----EKGSPVQALVNTGHKVGSDSQAPSY 590 + I A F + ++ + T ++ +P Sbjct: 978 LKIARGFARGAFELLPYSDEKETDERKEETSESPPKEAGSPKL 1020 >gi|282877162|ref|ZP_06286000.1| S1 RNA binding domain protein [Prevotella buccalis ATCC 35310] gi|281300654|gb|EFA92985.1| S1 RNA binding domain protein [Prevotella buccalis ATCC 35310] Length = 524 Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 122/402 (30%), Positives = 207/402 (51%), Gaps = 4/402 (0%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 ++ +Q + Q +LVQIVKE KG +T LS AGR+ VL+P K S+ Sbjct: 107 QKDGSVQSTLTLGQEILVQIVKEPISTKGPRLTAELSFAGRFLVLIPFGDKVSVSSKIKN 166 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SV 283 + + P GVI+RT + E+ + + L + W + Sbjct: 167 GEERAR--LKQLVRSIKPKNCGVIVRTVAEGKRVAELDGEMKVLTKRWQDAIVKVQKTQK 224 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 P LVYEE +RD++ I ++ E+ +R+ KD++ L+ PS + IV++Y Sbjct: 225 RPQLVYEEAVRAIALLRDIFNPSFENIYINDEEAFRQVKDYVTLIAPSKSGIVKRYTGKV 284 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQT 402 PIF I Q+ S + Y+II TEAL +DVNSG TR+ ++ AL+ Sbjct: 285 PIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRKENDQEANALEV 344 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NL AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + +++ ++++ DRAR + +S F Sbjct: 345 NLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQMLYERMCKNMQSDRARHNILPLSKF 404 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 GL++++RQR+R + + + C C G G I+S + R +++ + + +H Sbjct: 405 GLMQITRQRVRPVMDVNVDETCPTCNGTGKIKSSILFTDQLERKIDKLVNKIGIKRFTLH 464 Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 H V Y+ + +++ ++G+ +NV+ +LA + Sbjct: 465 VHPYVAAYINQGVFSLKRKWQMKYGLGVNVIPSQKLAFLQYE 506 Score = 111 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 63/440 (14%), Positives = 117/440 (26%), Gaps = 44/440 (10%) Query: 1 MANKMLIDASHVEETRVV--VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M ++++ID +E + +L D R+ E E GN+Y+AKV ++ P L A F Sbjct: 1 MTSEVVIDV---QEKDIATALLEDKRLVEYQNEPRSATFSVGNVYIAKVKKLMPGLNACF 57 Query: 59 VDYGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVADDVTH--- 109 VD G R FL +L++ Y + SDR+ L + + V Sbjct: 58 VDVGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPFAKASHLPDLQKDGSVQSTLT 117 Query: 110 -GDVTIPNDHSLEEVAPIANFSQETE------------EESIISANNDVVSNVEDVKGGS 156 G + + E ++ +S+ +K Sbjct: 118 LGQEILVQIVKEPISTKGPRLTAELSFAGRFLVLIPFGDKVSVSSKIKNGEERARLKQLV 177 Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 PK K L ++ + + A V + V + Sbjct: 178 RSIKPKNCGVIVRTVAEGKRVAELDGEMKVLTKRWQDAIVKVQKTQKRPQLVYE-EAVRA 236 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR----DFEYLMRLW 272 + R I NP ++ + + K + D + + Sbjct: 237 IALLRDIFNPSFENIYINDEEAFRQVKDYVTLIAPSKSGIVKRYTGKVPIFDNFNITKQI 296 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + +N + E + + L Sbjct: 297 KSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRKENDQEANALEVNLGAADELARQL 356 Query: 333 ------------ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 + ED ++ R +Q D + L G + I + Sbjct: 357 RLRDMGGIIVVDFIDMHLAEDRQMLYERMCKNMQSDRARHNILPLSKFGLMQITRQRVRP 416 Query: 381 SIDVNSGRSTREHCIEDTAL 400 +DVN + Sbjct: 417 VMDVNVDETCPTCNGTGKIK 436 >gi|114567132|ref|YP_754286.1| ribonuclease E and G [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338067|gb|ABI68915.1| RNAse G [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 476 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 216/408 (52%), Gaps = 6/408 (1%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 + V K+ + E++K+ Q ++VQ+ KE KGA VT LS+ GR VL+P Sbjct: 70 DVVRVGKKKGLNVYELLKSGQDIMVQVKKEAFSEKGARVTGDLSIPGRLLVLLPFQ-NEV 128 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 +ISRKIT RK+L+ + + G G+I+RTA EI ++ L++ W+ +++ Sbjct: 129 SISRKITGDERRKHLRSLLEESKPENG-GIIVRTACLEAEDQEIIQELNRLLKTWEEIKQ 187 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 N AP L+YE+ ++++R +RD ++S I+++ + + D++ +R Sbjct: 188 RYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKDKILDYIS--GKKIFNSLR 245 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 + +F + +E + + ++ L + GY+I ++TEA+ IDVNSG+ T + E+ Sbjct: 246 VDYEEGALFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAMTVIDVNSGKFTGKDNFEE 305 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 T + N+EAA EI RQLRLR L G+I++DFIDM+EK N + K LK L+KD+A ++ Sbjct: 306 TVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDELIKVLKTGLEKDKANTRII 365 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 I+ G LEM+R++ R V+E T C+ C G G+I + ++A R + Sbjct: 366 GITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQALASEAKRKMAHMGYLENNQ 425 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 I + +L I E R G S+ ++ +LA + I Sbjct: 426 IICKAEPRLLK--ILKDDEKDIGYIERRSGKSVLLLSDPDLAPGEYKI 471 >gi|322434534|ref|YP_004216746.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX9] gi|321162261|gb|ADW67966.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX9] Length = 1344 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 146/481 (30%), Positives = 246/481 (51%), Gaps = 2/481 (0%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R+ + + D +D + + +F+ ++ Sbjct: 864 REPRRDRDDRGRRDGRRGDRGRRDRGSDRGSDRGGDRNSERGSFTSPGAGSDRPERSSSD 923 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 D +GG + I E++K Q +L QI KE KGA +T++++L GR Sbjct: 924 RGGSRDSRGGRGSRQSMQSTNLPAISELLKPGQEILCQIAKEPIAKKGARITSHIALPGR 983 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + V MP + +SRKI + +R+ LKEI + A G I+RTA + ++ E++ D Sbjct: 984 FLVFMPTVNHTG-VSRKIESDGERRRLKEILLSEKGEASGGFIVRTAASGASEEELRSDL 1042 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 +L+ LW +++ + +S +P L+Y + NL++R +RD S I V E Y F+ Sbjct: 1043 RFLLNLWADIKARSESSKSPALIYHDLNLVERVLRDQVTDTFSAIWVDTETEYERVLRFL 1102 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + PS R V+ Y P+F + GI +++ +++V L S G ++INQTEALV+ID+N Sbjct: 1103 QRFQPSLIRRVKLYTKETPLFEQFGITEEINKALRSKVWLKSGGSIVINQTEALVAIDIN 1162 Query: 386 SGRSTREHCI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 +G+ + EDT ++TNL+A EI RQ+RLRDL G+I++DFIDM+E+KN V L+ Sbjct: 1163 TGKFVGKTARLEDTIVKTNLDAIPEIVRQIRLRDLGGIIIIDFIDMDERKNRNKVMAALE 1222 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 E LK DRA +V ++FGL+ ++R+R++ S+ + + C C G G ++S +V I Sbjct: 1223 EELKSDRAPSKVLQFNDFGLVAITRKRVKQSLERTLSTTCGVCAGTGMVKSPVTVCNDIY 1282 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 + + ++++ H +VV L + + E E G +I V L + F Sbjct: 1283 VEMRKMHKHLDRGDVMLRVHPEVVKQLKSGTSRWLQEMEEMCGKTILVKSDPSLHPEQFD 1342 Query: 565 I 565 I Sbjct: 1343 I 1343 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++ I +S ETR+ ++ ++ + E+ +E E++ + G+IY KVTRV P +Q++FVD Sbjct: 1 MSKEIYI-SSTPHETRLAIVENDELAEIYYERENEYTLAGSIYNGKVTRVLPGMQSSFVD 59 Query: 61 YGGNRHGFLPFLE 73 G R FL + Sbjct: 60 IGLERDAFLYITD 72 >gi|319952650|ref|YP_004163917.1| ribonuclease, rne/rng family [Cellulophaga algicola DSM 14237] gi|319421310|gb|ADV48419.1| ribonuclease, Rne/Rng family [Cellulophaga algicola DSM 14237] Length = 516 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 126/565 (22%), Positives = 227/565 (40%), Gaps = 63/565 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+ LI S + +L+D ++ EL + G+I++AKV + L AAFV+ G Sbjct: 2 NRELIVRSSSDTVDFALLKDGKLTELQKVEDSNNFSVGDIFIAKVRKPVTGLNAAFVNVG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 + FL + ++ P S +K++++ + ++ D D+ + Sbjct: 62 YEKDAFLHYHDLGPQ-----LSTMLKFIKQASLGKLKDFSLKDFPFEEDINKDGAITDVI 116 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 A + Q +E +Y + R + Sbjct: 117 KANQSLLVQIVKEPISTKGPRISSE--------------LSIAGRYLVMVPFSERISVSQ 162 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 +I E ++ + + G ++ Sbjct: 163 KIESSEEKDRLKRLVKSIKPKGFGVIIR-------------------------------- 190 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 T + E+ +D + L+ W + + + P V E N +RD+ Sbjct: 191 --------TVAEGKKVAELDKDLQNLLAKWSVMCKKLYKAPHPSKVLVELNRASSILRDV 242 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQT 361 + + I V E Y + KD++ + P IV+ ++ PIF + GIE Q+ + Sbjct: 243 FNDSFTGIHVDDEVLYEQVKDYVAEIAPEKESIVKLYSDNTVPIFEKFGIERQIKTSFGR 302 Query: 362 EVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 + Y+II TEAL +DVNSG RS + E+TAL+ NL AA EIARQLRLRD+ Sbjct: 303 TAAMSKGAYLIIEHTEALHVVDVNSGNRSNKAKNQEETALEVNLLAASEIARQLRLRDMG 362 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDM + +N R + L++ +K DRA+ ++ S FGL++++RQR+R + T Sbjct: 363 GIIVVDFIDMTKGENRRRLFDHLRDEMKDDRAKHKILPPSKFGLIQITRQRVRPEMNIKT 422 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATI 539 T+ KG + + + I +E+ + + ++ H + Y+ + Sbjct: 423 TEEDPNQKGQ-EVEAPIVLIDKINADLEKLFNGPAKDNAVTLNIHPFIAAYITKGFPSIR 481 Query: 540 VEYEARFGVSINVVIGIELADKLFY 564 ++ + I + + Sbjct: 482 SKWFLEYKKWIKIQPRDAYTYLEYR 506 >gi|261880408|ref|ZP_06006835.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361] gi|270332953|gb|EFA43739.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361] Length = 524 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 142/498 (28%), Positives = 239/498 (47%), Gaps = 17/498 (3%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVAPIAN 128 P ALL++ + + +E + + + G+V I D E A + Sbjct: 11 PKEISIALLEDKRLVEYQNEPRSANFSVGNVYIAKVKKLMPGLNACFVDVGYERDAFLHY 70 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++ S V S+ + + S KR +Q+ ++ Q +LVQIVKE Sbjct: 71 LDLGSQFNSYAKYLKQVQSDRKKLYPFSKASRLPDLKRDGSVQQTLQVGQEVLVQIVKEP 130 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 KG +T LS AGR+ VL+P K ++ + + + P G VI Sbjct: 131 ISTKGPRLTCELSFAGRFLVLIPFGDKVNVSTKIKSGEERAR--LKQLIRSIKPKGCSVI 188 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDI 307 +RT + E+ + + L + W N + P LVYEE +RDL+ Sbjct: 189 VRTVAEGKRVAELDVELKVLTKRWLNAIVKVQKTQDRPQLVYEEEGRTVAMLRDLFNASY 248 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 I V+ + ++E KD++ L+ P IV++Y+ PIF + Q+ S V Sbjct: 249 ENIFVNEDDIFKEVKDYISLIAPKKVNIVKRYKGKVPIFDNFNVTKQIKSSFGKTVNYAH 308 Query: 368 RGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 Y+II TEA+ +DVNSG RS E E TAL+TNL AA+E+ARQLRLRD+ G+IVVD Sbjct: 309 GAYLIIEHTEAMHVVDVNSGNRSKNEKGQEGTALETNLGAADELARQLRLRDMGGIIVVD 368 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ + C Sbjct: 369 FIDMNLAEDRQMLYERMCKAMQKDRARHNILPLSKFGLMQITRQRVRPAMDVIVEENCPT 428 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G G IRS + +++ + + +H H V Y+ + +++ ++ Sbjct: 429 CNGTGKIRSSILFTDQLEGKIDQLVNKIGIKKFYLHVHPYVAAYIKQGVISLRRKWQHKY 488 Query: 547 GVSINVVIGIELADKLFY 564 G ++V+ +LA + Sbjct: 489 GFGVHVISSQKLAFLQYE 506 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++IDA +E + +L D R+ E E GN+Y+AKV ++ P L A FVD Sbjct: 1 MTSEVIIDAK-PKEISIALLEDKRLVEYQNEPRSANFSVGNVYIAKVKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104 G R FL +L++ Y + SDR+ L S ++ Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKKLYPFSKASRLPDLKRD 109 >gi|225021682|ref|ZP_03710874.1| hypothetical protein CORMATOL_01710 [Corynebacterium matruchotii ATCC 33806] gi|224945673|gb|EEG26882.1| hypothetical protein CORMATOL_01710 [Corynebacterium matruchotii ATCC 33806] Length = 953 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 137/562 (24%), Positives = 240/562 (42%), Gaps = 26/562 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ +LVQ+ K+ G KG +TT +SLAGRY V +P Sbjct: 387 GEVDWRAANLGGRHRKIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPG- 445 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 K ISRK+ P ++ + VPA VI+RTA + I D L LW+ Sbjct: 446 GKSAGISRKLPAPERKR--LKAILKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLWE 503 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++E L +YEE N++ + +RDL+ +D + ++V G + + +++ + Sbjct: 504 QIQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSV 563 Query: 329 MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P + +++ F ++ QL +V LPS G ++I++TEA+ IDV Sbjct: 564 APDLLDRLEKFDREAHGGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDV 623 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 624 NTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 683 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L +DR R Q+ +++ GL++++R+R+ + +LE+ C C G G + V Sbjct: 684 TEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVLIHDDPVEHHT 743 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + E ++ + H V+ + E Sbjct: 744 ISDRPERRGKHGVPHQDPTRHPAVLAMEHQDESDEPEPAED-------FAEEPPFRPSEI 796 Query: 564 YIEKGSPV------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 IE + + + ++ + S +N + + +P KS+ I + Sbjct: 797 SIEGLAAAVIAPSSEDYLPATYEEAVSAYEASPRRNRKVRGNSLSDVPPQKSDFEPPIPE 856 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E R+RRR ++ ++ A V + + + + Sbjct: 857 PEPEPEPESGSRRRRRAVHKKVTESETAPAVDVDKLEETTHRTRKRRRVVRKTGSTATRR 916 Query: 678 LLENGAHGFTENYDVSIPPVST 699 + + S + Sbjct: 917 GATTQSRRSAASGKTSTDSATN 938 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E S+ + + GNIYL +V V P+++AAF+D G R+G L E+ Sbjct: 330 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 389 >gi|297562318|ref|YP_003681292.1| ribonuclease, Rne/Rng family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846766|gb|ADH68786.1| ribonuclease, Rne/Rng family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1007 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 131/546 (23%), Positives = 238/546 (43%), Gaps = 48/546 (8%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ V+K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 459 GEVNWDSFGLDGQPKRIESVLKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGG 518 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + +P+G GVI+RTA ++ E++RD L + WD Sbjct: 519 SMTG-ISRKLPDKERAR--LKQILKKVMPSGAGVIVRTAAEGASEEELERDITRLAKQWD 575 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ + ++ AP L+ E +L R +RD++ +D S ++VSGE+ + ++++ + P+ + Sbjct: 576 SIKRKSKSANAPSLLNSEPDLTVRVVRDVFNEDFSSLVVSGEEAWTTVREYVDYVAPNLS 635 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 + + + +F ++ Q++ + +V LPS G ++I++TEA+ +DVN+G+ T + Sbjct: 636 ERLSHWNEDRDVFAAYRVDEQINKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQG 695 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V +++ E L +DR Sbjct: 696 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRT 755 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + QV +++ GL++M+R+R+ +LE+ + C +C G G + + V S Sbjct: 756 KHQVAEVTSLGLVQMTRKRVGQGLLEAFSHSCEHCNGRGLVVASDPVESKGGGSGNGRKK 815 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + EK Q Sbjct: 816 KKGKGE------------------------------------------PDQAAEKPEKAQ 833 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + +K + E+ E Q ++R Sbjct: 834 KPSSEKA--DGADGPEKAEKAGADSDESAEADAARTEEAPEAPQTAEAPASEPAKKTRKR 891 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 R R+ A + + + + + E + D Sbjct: 892 ASRSRKAEAAAEEQEEITATEEAPEAAQPEQAAEAPEEAPAKKTRARRTTRRTARGAADT 951 Query: 693 SIPPVS 698 + Sbjct: 952 GEAEAA 957 Score = 98.5 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + L+ + T++ VL D+ + E + + GN+YL +V V PS++AAFVD G Sbjct: 390 KRDLVVRRVEDRTQIAVLEDDILVEHYVDRATHRSYVGNVYLGRVQNVLPSMEAAFVDIG 449 Query: 63 GNRHGFLPFLEIHPDYY 79 R+ L E++ D + Sbjct: 450 KGRNAVLYAGEVNWDSF 466 >gi|312143476|ref|YP_003994922.1| ribonuclease, Rne/Rng family [Halanaerobium sp. 'sapolanicus'] gi|311904127|gb|ADQ14568.1| ribonuclease, Rne/Rng family [Halanaerobium sp. 'sapolanicus'] Length = 560 Score = 231 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 134/441 (30%), Positives = 228/441 (51%), Gaps = 2/441 (0%) Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 K K++ I+ V++ Q L+VQ+VKE G+KGA VT +S+ GR+ V +P+ +K Sbjct: 81 QKNKLSKKELNIKHVLQPGQWLMVQVVKEPMGSKGAKVTCKISIPGRFFVYIPSDNKIGV 140 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 R + + + G G+I+RT S + +++ D+ +L W +R Sbjct: 141 SRRITDDEERNR--LKSIAGDLKNGKEGLIIRTNAHSESYSKLQNDYNFLSGTWKRIRND 198 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 ++Y+E +L+K IRD ++I ++V +K Y+ +D + P + Sbjct: 199 FFQKNNIDILYQEEDLLKNLIRDYLDENIDRVVVDDKKDYQRLRDLTSIFAPDLKNRIAL 258 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y+ PI IE +++SL Q +V L S GY++I+QTEALV+IDVN+G+ T + ++DT Sbjct: 259 YQRNIPILAAYNIEKEIESLLQRKVWLKSGGYLVIDQTEALVAIDVNTGKFTGKKNLQDT 318 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 ++ N EA EIARQ++LRD+ G+I++DFIDM + +SV L L+KDR + + Sbjct: 319 IVKINKEAVAEIARQIKLRDIGGIIIIDFIDMNNSSDQQSVTDLLANELQKDRTKTSILG 378 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 + GLLEM+R+++R K C C G G + S+S+VA+ ++R ++E ++ Sbjct: 379 FTQLGLLEMTRKKVREGFGSLMQKDCHCCGGTGKVLSESTVAMKVIRKIDEITIRDKYPA 438 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 + + H +V L+ + E E +FG+ I + EL + IEKGS + + Sbjct: 439 VSLELHPEVAAVLIGAGGEKLEELENKFGIDIFISGNTELNYEDMVIEKGSKEELQPDFL 498 Query: 579 HKVGSDSQAPSYDKNIECVWQ 599 D + Sbjct: 499 DLDVGDRITVEIEDQHASNQN 519 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++I+ S E R +L++N +E+L FE + ++I GNIY +V V P +QAAFVD Sbjct: 1 MSRQIIIN-SEFREKRAALLKNNTLEDLFFERDTYQKIAGNIYRGRVQDVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G R+ FL +++P Sbjct: 60 IGIARNAFLHLNDLYP 75 >gi|328882427|emb|CCA55666.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Streptomyces venezuelae ATCC 10712] Length = 1265 Score = 231 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 126/396 (31%), Positives = 217/396 (54%), Gaps = 6/396 (1%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 516 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 575 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 576 MGNGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 634 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W+++++ A + Sbjct: 635 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSG 692 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S++IVSG++ + ++ + P + ++ Sbjct: 693 NAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVHHVAPDLTDRLSKWTSE 752 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 753 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 812 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 813 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 872 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 873 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 908 Score = 96.2 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 498 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 557 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 558 KGRNAVLYAGEV 569 >gi|294506385|ref|YP_003570443.1| Ribonuclease E [Salinibacter ruber M8] gi|294342713|emb|CBH23491.1| Ribonuclease E [Salinibacter ruber M8] Length = 596 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 143/514 (27%), Positives = 238/514 (46%), Gaps = 70/514 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++ + + E+TR+ ++ D ++ EL E+ K+ GN+YL ++ +V PS+QAA Sbjct: 1 MSKEIVFNVGN-EQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAA--- 56 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I + L Sbjct: 57 ----------FVDIG---------------------------------QEQDAFLHFSDL 73 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + P E ++ + + D + + Q + Sbjct: 74 SDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNR----------------GQTI 117 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KE NKG+ ++T +SLAGR+ VL+P +SRKIT+ +R+ L E Sbjct: 118 LVQVTKEPISNKGSRISTDISLAGRFLVLVPLQ-NYVAVSRKITDDEERRRL-ESLASSL 175 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL-ALNSVAPHLVYEEGNLIKRAI 299 VP G+GVI+RT R + +D + LM W V + P LV+E+ ++ + Sbjct: 176 VPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIV 235 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD + ++ I+V E Y + +++ + P V +E P+F GI+ D Sbjct: 236 RDEFSEEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADRAF 295 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 + V LPS GY+ I +TEA+ +DVNSGRS + + +L NLEAA IARQ+RLRDL Sbjct: 296 KDRVELPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDL 355 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFID+ ++ + + V ++K+ ++DRA +V +S+FGL+E++RQR+R S+ + Sbjct: 356 GGIIVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTT 415 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 + G LR E + Sbjct: 416 FSSA----NGTPSDDGDDGADPEELRQAERKIQS 445 >gi|158317018|ref|YP_001509526.1| ribonuclease [Frankia sp. EAN1pec] gi|158112423|gb|ABW14620.1| ribonuclease, Rne/Rng family [Frankia sp. EAN1pec] Length = 1427 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 126/345 (36%), Positives = 206/345 (59%), Gaps = 4/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++V+K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 846 GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPD- 904 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + LK I + + G GVI+RTA ++ E++RD E L+ W+ Sbjct: 905 GQNAGISRKLPDTERAR-LKSILKKITPENG-GVIVRTAAEGASEAELERDIERLVAQWE 962 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A + AP L+Y E +L+ R IRD++ +D +E++V G + ++ + P Sbjct: 963 DIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVAPDLR 1022 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 VR+Y +F ++ QL +V LPS G ++I++TEA+ IDVN+G+ T + Sbjct: 1023 DRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 1082 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 1083 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 1142 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 R QV +++ GL++M+R+R+ +LE+ ++ C +C G G + Sbjct: 1143 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLD 1187 Score = 97.7 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +M I + + T++ VL D + E GN+YL +V V S++AAFVD Sbjct: 777 ERRM-IVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDI 835 Query: 62 GGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 836 GKGRNAVLYAGEVNYD 851 >gi|332878125|ref|ZP_08445854.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683863|gb|EGJ56731.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 514 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 129/567 (22%), Positives = 227/567 (40%), Gaps = 65/567 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S +LRD R+ EL E + G+I LAKV + L AAFV+ Sbjct: 1 MEKELII-RSGSSYVDFALLRDGRLIELHKEEDTNGLGVGDIMLAKVRKPIQGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P + +K + ++ D D+ Sbjct: 60 VGHEKDAFLHYHDLGPQ-----LASLLKFIKWVISGKLKDFSLKDFPLEPDIDKNGSV-A 113 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + P + +E I + + S + +Y + +R + Sbjct: 114 DTLKPNQPILVQIVKEPISTKGPRISSEL-------------SIAGRYLVLVPFSDRISI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I + + + + G I R + L + + L Sbjct: 161 SQKIESKSEKERLRKLLQSIKPKGF-----------GVIVRTVAEGKKVAELDKDLQSL- 208 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 W + +V P V E N +R Sbjct: 209 ----------------------------FNRWVLMCRKIQKAVYPSKVMSEVNRTGAILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 DL+ + I V E+ Y + K +++ + P IV+ Y PIF + IE Q+ + Sbjct: 241 DLFNDTFTGIHVDNEQLYEQIKKYVQEIAPEKESIVKLYRSSVPIFEKFHIERQIKTAFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDL 419 V++P Y++I TEAL IDVNSG + ++ ++ TAL NL AA EIARQLRLRD+ Sbjct: 301 RTVSMPKGAYLVIEHTEALHVIDVNSGNHSNKNNDQETTALSVNLIAATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM N R + L++ + +DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMASSDNRRILFDHLRDEMAEDRAKHKILPPSKFGLIQITRQRVRQELNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHTHSDVVLYLLNQKRAT 538 T + +G I + + I +E + + I+++ H + YL + Sbjct: 421 TKEENPSKEGE--IEAPIVLIDKINIELESIIKEDAYKGRIVLNAHPFIAAYLTKGFLNS 478 Query: 539 IV-EYEARFGVSINVVIGIELADKLFY 564 I ++ ++ I ++ + + Sbjct: 479 IRFKWFLKYKRWIKILPRDAYSYLEYR 505 >gi|83814929|ref|YP_444634.1| ribonuclease [Salinibacter ruber DSM 13855] gi|83756323|gb|ABC44436.1| ribonuclease, Rne/Rng family subfamily [Salinibacter ruber DSM 13855] Length = 596 Score = 230 bits (585), Expect = 7e-58, Method: Composition-based stats. Identities = 143/514 (27%), Positives = 238/514 (46%), Gaps = 70/514 (13%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++ + + E+TR+ ++ D ++ EL E+ K+ GN+YL ++ +V PS+QAA Sbjct: 1 MSKEIVFNVGN-EQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAA--- 56 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 F++I + L Sbjct: 57 ----------FVDIG---------------------------------QEQDAFLHFSDL 73 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + P E ++ + + D + + Q + Sbjct: 74 SDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNR----------------GQTI 117 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+ KE NKG+ ++T +SLAGR+ VL+P +SRKIT+ +R+ L E Sbjct: 118 LVQVTKEPISNKGSRISTDISLAGRFLVLVPLQ-NYVAVSRKITDDEERRRL-ESLASSL 175 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL-ALNSVAPHLVYEEGNLIKRAI 299 VP G+GVI+RT R + +D + LM W V + P LV+E+ ++ + Sbjct: 176 VPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIV 235 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD + ++ I+V E Y + +++ + P V +E P+F GI+ D Sbjct: 236 RDEFSEEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADRAF 295 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 + V LPS GY+ I +TEA+ +DVNSGRS + + +L NLEAA IARQ+RLRDL Sbjct: 296 KDRVELPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDL 355 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFID+ ++ + + V ++K+ ++DRA +V +S+FGL+E++RQR+R S+ + Sbjct: 356 GGIIVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTT 415 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 + G LR E + Sbjct: 416 FSSA----NGTPSDDGDDGADPEELRQAERKIQS 445 >gi|304316596|ref|YP_003851741.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778098|gb|ADL68657.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 475 Score = 230 bits (585), Expect = 7e-58, Method: Composition-based stats. Identities = 141/462 (30%), Positives = 236/462 (51%), Gaps = 8/462 (1%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 +D T + + + V I + + + SA D+ S + K Sbjct: 19 EDGTLVEYHVEYSDNRSIVGNIYKGKVKNTIKGMQSAFIDIGIGKNAYLFISDVNKKGKA 78 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I ++IK Q ++VQ+ K+ G K VTT +SL G+Y VL+P T R Sbjct: 79 DENCSITKLIKPGQDIIVQVSKDSIGLKNPKVTTNISLPGKYVVLLPETDYIGISHRIED 138 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + L P +G+I+RTA + ++E ++D L L+D + + + Sbjct: 139 EKKRLELL--NIAKRVKPDNLGIIIRTAAQNVNEVEFEKDILDLCYLYDEIIKKYKYVNS 196 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+YEE N I + IRDL + EI+++ + Y + D++K + + Sbjct: 197 PELIYEEENFIVKYIRDLSSFMVDEIVINDVEQYEKTLDYIKKQGQNISIKYE----EGD 252 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 + GIE Q++ L +V L S G++II++TEAL IDVN+G+ + +++T L+TN+ Sbjct: 253 LISLYGIEKQVERLLGKKVWLKSGGFIIIDKTEALTVIDVNTGKYVGKSSLQETILKTNI 312 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA+EIA QLRLRD+ G+IV+DFIDM+ + + + + +ESLK DR++ V ++ GL Sbjct: 313 EAAKEIALQLRLRDIGGIIVIDFIDMDNESDRQKLLSVFEESLKSDRSKCSVLGFTHLGL 372 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R+RS+V E C CKG GY+ S + + L I R++E L A I + ++ Sbjct: 373 VEMTRKRVRSNVSEYLQDKCECCKGTGYVMSNNMLVLKIKRTIERILRNTNAKKIKITSN 432 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 ++ + Y+ +FG IN V+ +L F ++ Sbjct: 433 RRILNLISQNDLK--KSYKEKFGAEINTVLNDKLDIDEFQVD 472 Score = 92.0 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++L D S + +V L D + E E + I GNIY KV +Q+AF+D G Sbjct: 2 KRILFDISDKFD-QVAYLEDGTLVEYHVEYSDNRSIVGNIYKGKVKNTIKGMQSAFIDIG 60 Query: 63 GNRHGFLPFLEI 74 ++ +L ++ Sbjct: 61 IGKNAYLFISDV 72 >gi|167753147|ref|ZP_02425274.1| hypothetical protein ALIPUT_01418 [Alistipes putredinis DSM 17216] gi|167659461|gb|EDS03591.1| hypothetical protein ALIPUT_01418 [Alistipes putredinis DSM 17216] Length = 516 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 117/406 (28%), Positives = 195/406 (48%), Gaps = 3/406 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + ++ I ++ Q ++VQ+ KE KG +T +SLAGR VL+P +SK Sbjct: 97 DAMKLEPPIEKSGKIGSYLQVGQTVMVQVAKEAISTKGPRLTADISLAGRNVVLVPFSSK 156 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + ++ + +P GVI+RTA +I++D L+ W Sbjct: 157 VFLSQKIRSAEEKKR--LKGIAAAVLPKNFGVIIRTAAVEAKDSDIEQDIRSLLDKWQKT 214 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + + AP + E N IRD S+I+V E Y E +++++ + P ++ Sbjct: 215 LQNIRKNPAPAQLMSEMNRANTIIRDSLGGAFSQIVVDDEAMYHEIQNYIRQIEPQSEKL 274 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHC 394 V+ Y+ PIF I Q+ SL V+L Y+II TEA+ IDVNSG T+ E Sbjct: 275 VKLYKGNVPIFDNFDISKQIKSLFAKYVSLRRGAYLIIEHTEAMNVIDVNSGNRTKAEDD 334 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 E TA NL AA EIARQLRLRDL G++++DFIDM + N + + +++ + + D+A+ Sbjct: 335 QEQTAFDVNLAAAREIARQLRLRDLGGIVIIDFIDMHKAANRQLLYEEMNKLMATDKAKH 394 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 V ++ FGL++++RQR+R ++ T VC C G G I + I + Sbjct: 395 TVLPLTKFGLMQITRQRVRPVAVQDVTDVCPTCNGTGRIEPTVLLDKKIENKISYLAQDA 454 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 I + V YL + + + ++ + + +V + Sbjct: 455 GHKYIKLRVSPYVSTYLNHGLWSLRRRWMWKYKIQLKIVADQSVGI 500 >gi|298207123|ref|YP_003715302.1| Ribonuclease G [Croceibacter atlanticus HTCC2559] gi|83849757|gb|EAP87625.1| Ribonuclease G [Croceibacter atlanticus HTCC2559] Length = 516 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 214/565 (37%), Gaps = 63/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I + +L+D R+ EL + + K G+I+ AK+ + P L AAFV+ Sbjct: 1 MNKELII-RTSSSGVDFALLKDGRLIELQQDEDDNKFAVGDIFTAKIRKTVPGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + GFL + ++ P VT G + + + Sbjct: 60 VGYEKDGFLHYHDLGPQ-------------------VGSLLKFVKQVTTGKLKDFSLKNF 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 I + + V G +Y + NR + Sbjct: 101 PLEKDIDKNGTVNDALKSNQSILVQVVKEPISTKGPRISSELSLAGRYIVLVPFSNRISV 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I +E + + + PN I R + ++ + L Sbjct: 161 STKIGTKEEKERLKRLVK---------SIKPN--NFGVIIRTVAEGKKVADIHTDLQNLM 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + + P V E N +R Sbjct: 210 DRW-----------------------------TAMCKKMYRPNYPTKVLGEMNKASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE-DPHPIFFRSGIEVQLDSLH 359 D++ + I V E + + KD++ + P IV+ Y+ PIF + GIE Q+ + Sbjct: 241 DVFNDSFTSICVDDETLHTQIKDYVGEIAPEKESIVKYYDSSKVPIFEKFGIERQIKTSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 V++ Y+II TEA+ IDVNSG RS + E TAL+ N+ +A E+ARQLRLRD Sbjct: 301 GKTVSMSKGAYLIIEHTEAMHVIDVNSGNRSNKSKSQEGTALEVNMISATEVARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM + +N R + L++ + DRA+ ++ S FGL++++RQR R Sbjct: 361 MGGIIVVDFIDMGKAENRRKLFDHLRDEMSDDRAKHKILPPSKFGLIQITRQRTRPETNI 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 T +V G I + + I ++ + ++ + + H + YL + Sbjct: 421 KTREVNPSNNGGEEIEAPIIIVEKI-KTDLQKAIKKGHKKMSITAHPFIAAYLTRGFPSP 479 Query: 539 IVEYEARFGVSINVVIGIELADKLF 563 + + V+ + Sbjct: 480 RANWFFDHKRWVKVLPRDAYTYLEY 504 >gi|86739925|ref|YP_480325.1| ribonuclease [Frankia sp. CcI3] gi|86566787|gb|ABD10596.1| ribonuclease, Rne/Rng family [Frankia sp. CcI3] Length = 1194 Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats. Identities = 125/345 (36%), Positives = 205/345 (59%), Gaps = 4/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++V+K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 620 GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVFVPD- 678 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + LK I + + G GVI+RTA ++ E++RD E L W+ Sbjct: 679 GQNAGISRKLPDTERAR-LKSILKKITPEDG-GVIVRTAAEGASEAELERDIERLAAQWE 736 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ A + AP L+Y E +L+ R IRD++ +D +E++V G ++++ + P Sbjct: 737 DIERKAKKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSGEAITIEEYIDTVAPDLR 796 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +R+Y +F ++ QL +V LPS G ++I++TEA+ IDVN+G+ T + Sbjct: 797 SRIRRYTGTGDVFAEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 856 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 857 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 916 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 R QV +++ GL++M+R+R+ +LE+ ++ C +C G G + Sbjct: 917 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCVHCNGRGVVIHLD 961 Score = 97.4 bits (240), Expect = 7e-18, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 2 ANKMLIDASHVEE-TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 +M++ H E T++ VL D + E GN+YL +V V S++AAFVD Sbjct: 551 ERRMVV--RHAGERTQIAVLEDGVLVEHFVTRASSSSYAGNVYLGRVQNVLASMEAAFVD 608 Query: 61 YGGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 609 IGKGRNAVLYAGEVNYD 625 >gi|150390069|ref|YP_001320118.1| ribonuclease [Alkaliphilus metalliredigens QYMF] gi|149949931|gb|ABR48459.1| ribonuclease, Rne/Rng family [Alkaliphilus metalliredigens QYMF] Length = 500 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 127/424 (29%), Positives = 224/424 (52%), Gaps = 3/424 (0%) Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + V+D + + I+E++K Q ++VQ++KE +KGA VT ++ Sbjct: 62 EKNAFLYVKDALSEEMFNQDVTKLKDLNIRELVKPGQEIVVQVIKEPISSKGARVTRNIT 121 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 L GRY VLMP T +SR+I N +R LK ++ MG+I+RT A + K + Sbjct: 122 LPGRYLVLMPYTDYVG-VSRQIGNTAERDRLKSEIEEIKPA-NMGIIVRTVAAGKEKEDF 179 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 K D ++L++LW + + P +Y++ +++ R IRD + K I ++ + Y+++ Sbjct: 180 KDDIKFLLKLWLKIEKDKKLGYPPKTIYKDFDILNRTIRDTFTKSIERFVIDSPEAYQQS 239 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + ++L+ P ++ YE+P IF GIE Q+ + ++ L S GY+II+ TEAL Sbjct: 240 LELVELISPHLKDKLKLYEEPIDIFEYYGIESQIQKALEKKIWLQSGGYIIIDLTEALTV 299 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 IDVN+G+ +EDT +TN+EA +EIA+QLRLR++ G+I++DFIDM + V + Sbjct: 300 IDVNTGKYVGSIDLEDTVFKTNMEATKEIAKQLRLRNIGGIIIMDFIDMTNPNQKQKVLE 359 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L++ L KDR R +V ++ GL+EM+R+++R + + C C+G G I + ++ Sbjct: 360 LLEKELSKDRTRTKVLGMTQLGLVEMTRKKVRDRIESTLQTKCPTCEGTGRILCEQTMLT 419 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + + + A IV + + ++ R I E E + + + L+ Sbjct: 420 KLEKMMIRTQKHTNAAAAIVDVNPNTYEAMM-VYRTVIEEIELQTNIKVYFNKSSALSFD 478 Query: 562 LFYI 565 + Sbjct: 479 DLKV 482 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 7 IDASHVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 I AS ET+V +L + EL + ++ ++I GNIY +V V P ++AAFVD G + Sbjct: 4 IIASVSLIETKVALLEGQELVELYIDRKNSRRIVGNIYKGRVINVLPGMEAAFVDIGLEK 63 Query: 66 HGFLPFLE 73 + FL + Sbjct: 64 NAFLYVKD 71 >gi|302389320|ref|YP_003825141.1| RNAse G [Thermosediminibacter oceani DSM 16646] gi|302199948|gb|ADL07518.1| RNAse G [Thermosediminibacter oceani DSM 16646] Length = 563 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 145/505 (28%), Positives = 252/505 (49%), Gaps = 21/505 (4%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R +L++ + + E ++ G++ ++ A E+ + + + Sbjct: 15 RVGILEDRELVEFFIEKNFEERVAGNIYKGRVTNVLPGMQAAFVDIGLEKNAFLYVGDIN 74 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + +V + E + R+ I+++++ Q +LVQ+VKE G+KGA V+T ++L GR Sbjct: 75 IDSVGPEEKDLLEGL-----RKLSIKDILRVGQEVLVQVVKEPMGSKGARVSTNITLPGR 129 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMP R + + P MGVI+RTA R + E+K D Sbjct: 130 YLVLMPRVDYVGISRRIEKEEERNR--LKALAEELRPPRMGVIVRTAAEGRGRDELKADI 187 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 +YL +LW++++ AP L+Y++ NL+ R +RD++ ++S ++ GY + + + Sbjct: 188 DYLKKLWEDIQLRQRGGNAPRLIYKDMNLLARIVRDVFTPEVSRFYINSPSGYEKLLELV 247 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 ++ PS + Y IF IE +++ + +V L S GY++I++TEAL +IDVN Sbjct: 248 SMISPSLKDRISLYRGQEEIFEYFNIEQEIERALRRKVWLRSGGYIVIDRTEALTAIDVN 307 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 +G+ +EDT L+TNLEAA EIA+Q+RLRD+ G+I++DFIDM ++ + V L+ Sbjct: 308 TGKFVGSIDLEDTVLKTNLEAAREIAKQVRLRDIGGIIIIDFIDMNSPEHRKMVLDALES 367 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA----- 500 LKKDR R + I++ GL+EM+R+++R S+ E KVC YC+G G I S+ ++A Sbjct: 368 ELKKDRTRTHILGITSLGLVEMTRKKVRQSLDEVMEKVCPYCEGKGRILSEEAMAKRVER 427 Query: 501 --LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 I R +++ H V ++ + + E R+ I + L Sbjct: 428 ELSRIFR-------NNRGEAVLIEVHPSVASSVIGAGGSRLSLLEQRYEKYIFIKGNASL 480 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGS 583 + + L N V Sbjct: 481 HPEEIKVRAVGSKAKLENLAVPVRE 505 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ +++ D ++ RV +L D + E E ++++ GNIY +VT V P +QAAFVD Sbjct: 1 MSKEIIADVGR-DQVRVGILEDRELVEFFIEKNFEERVAGNIYKGRVTNVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHPD 77 G ++ FL +I+ D Sbjct: 60 IGLEKNAFLYVGDINID 76 >gi|312195823|ref|YP_004015884.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c] gi|311227159|gb|ADP80014.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c] Length = 1230 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 123/335 (36%), Positives = 203/335 (60%), Gaps = 4/335 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 R I++V+K Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ + ISRK+ + Sbjct: 678 RPRKIEQVLKPGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPD-GQNAGISRKLPD 736 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK I + + G GVI+RTA ++ E++RD E L W+++ A + AP Sbjct: 737 VERSR-LKSILKKITPEDG-GVIVRTAAEGASEQELERDIERLAAQWEDISRKAQKASAP 794 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y E +L+ R IRD++ +D +E++V G + + ++ L+ P VR++ + Sbjct: 795 ALLYGEPDLVVRVIRDIFNEDFTELLVQGSGEAEQIESYVDLVAPDLRNRVRRHVGTTDL 854 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNL 404 F ++ QL +V LPS G ++I++TEA+ +DVN+G+ T + +E+T + NL Sbjct: 855 FTEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGKGGNLEETVTKNNL 914 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR R QV +++ GL Sbjct: 915 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 974 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 ++M+R+R+ +LE+ ++ C +C G G + Sbjct: 975 VQMTRKRVGQGLLEAYSEPCAHCNGRGVLIHLDGH 1009 Score = 93.9 bits (231), Expect = 8e-17, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +ML+ + T++ VL D + E GN+YL +V V S++AAFVD Sbjct: 597 ERRMLV-RHAGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDV 655 Query: 62 GGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 656 GKGRNAVLYAGEVNYD 671 >gi|72162582|ref|YP_290239.1| ribonuclease E and G [Thermobifida fusca YX] gi|71916314|gb|AAZ56216.1| ribonuclease E and G [Thermobifida fusca YX] Length = 908 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 122/345 (35%), Positives = 204/345 (59%), Gaps = 4/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ V+K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 435 GEVNWDATGLEGQPRRIESVLKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDG 494 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + +P G GVI+RTA ++ E++RD L + W+ Sbjct: 495 SMTG-ISRKLPDKERAR--LKQILKKVMPNGAGVIVRTAAEGASEEELERDIARLSQQWE 551 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A ++ AP L+ E +L R +RD++ +D S ++VSG+ + +D++ + P A Sbjct: 552 SIKRKAKSATAPALLSSEPDLTIRVVRDIFNEDFSSLVVSGDDAWETIRDYVNQVAPHLA 611 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 + + + IF I+ Q+ + +V LPS G +II++TEA+ IDVN+G+ T + Sbjct: 612 DRLSHWTEDRDIFEAYRIDEQIAKALERKVWLPSGGSLIIDRTEAMTVIDVNTGKFTGQG 671 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V +++ E L +DR Sbjct: 672 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRT 731 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 + QV +++ GL++M+R+R+ +LE+ + C +C G G I Sbjct: 732 KHQVAEVTSLGLVQMTRKRVGQGLLEAFSHTCEHCNGRGLILQTD 776 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 40/75 (53%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + LI E T++ VL DN + E + K GN+YL +V V PS++AAFVD G Sbjct: 366 KRDLIVRRIGERTQIAVLEDNVLVEHYVDRADHKSYVGNVYLGRVQNVLPSMEAAFVDIG 425 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 426 KGRNAVLYAGEVNWD 440 >gi|239931307|ref|ZP_04688260.1| hypothetical protein SghaA1_24010 [Streptomyces ghanaensis ATCC 14672] gi|291439681|ref|ZP_06579071.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291342576|gb|EFE69532.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 1015 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 123/345 (35%), Positives = 201/345 (58%), Gaps = 4/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 267 GEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 326 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L W+ Sbjct: 327 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQGQWE 383 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++++ + N AP L+Y E ++ R +RD++ +D S+++VSG + ++ + P A Sbjct: 384 DIQKKSKNGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGPDAWETIHGYVSHVAPDLA 443 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 ++++ +F I+ QL +V LPS G ++I++TEA+V IDVN+G+ T + Sbjct: 444 DRLQKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQG 503 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR Sbjct: 504 GNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRT 563 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 + QV +++ GL++M+R+R+ +LES ++ C +C G G I Sbjct: 564 KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 608 Score = 95.8 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ H + T++ VL D + E E GN+YL KV V PS++AAF+D G Sbjct: 198 ERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 257 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 258 KGRNAVLYAGEV 269 >gi|282881457|ref|ZP_06290131.1| S1 RNA binding domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304683|gb|EFA96769.1| S1 RNA binding domain protein [Prevotella timonensis CRIS 5C-B1] Length = 524 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 124/401 (30%), Positives = 204/401 (50%), Gaps = 4/401 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + +Q + Q +LVQIVKE KG +T LS AGR+ VL+P K S+ Sbjct: 108 KDGSVQSTLTVGQEVLVQIVKEPISTKGPRLTGELSFAGRFLVLIPFGDKVSVSSKIKKG 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVA 284 + + P GVI+RT + ++ + + L + W N Sbjct: 168 EERAR--LKQLVQTIRPKNCGVIVRTVAEGQRIAALEGEMKVLTKRWQNAIVKVQKTQNR 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LVYEE +RD++ D I V+ ++ YR+ D++ L+ P+ A IV++Y P Sbjct: 226 PQLVYEEAVRAIALLRDIFSPDFENIYVNNDEAYRQVSDYVSLIAPNKAGIVKKYTGSVP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF I Q+ S + Y+II TEAL +DVNSG TR ++ AL+ N Sbjct: 286 IFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTRNENGQEANALEVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + +++ ++++ DRAR + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQLLYERMCKNMQNDRARHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R + S + C C G G IRS + +++ + + +H Sbjct: 406 LMQITRQRVRPVMDVSVDETCPTCNGTGKIRSSILFTDRLEDKIDKLVNKIGIKRFYLHV 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 H V Y+ + +++ ++G+ +N+V +LA + Sbjct: 466 HPYVAAYINQGIISLKRKWQIKYGLGVNIVPSQKLAFLQYE 506 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 11/112 (9%) Query: 1 MANKMLIDASHVEETRV--VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M ++++ID +E + +L D R+ E E GN+Y+AKV ++ P L A F Sbjct: 1 MTSEVVIDV---QEKDISTALLEDKRLVEYQNEPRSASFSVGNVYIAKVKKLMPGLNACF 57 Query: 59 VDYGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104 VD G R FL +L++ Y + SDR+ L + + Sbjct: 58 VDVGYERDAFLHYLDLGSQFNSYTKYLKQVQSDRKKLYPFAKASHLPDLKKD 109 >gi|163753444|ref|ZP_02160568.1| ribonuclease G [Kordia algicida OT-1] gi|161327176|gb|EDP98501.1| ribonuclease G [Kordia algicida OT-1] Length = 515 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 245/566 (43%), Gaps = 63/566 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S+ E +L+D ++ EL E ++ G D Sbjct: 1 MNKELII-RSNSSEVDFALLKDGKLIELHKEEDNNDFAVG-------------------D 40 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 FL G + Sbjct: 41 I------FLA--------------------------------KIRKPVSGLNAAFVNVGY 62 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E+ A + + S++ V + + I + +K Q + Sbjct: 63 EKDAFLHYHDLGPQLPSLLKFIKRVSTGKLKDYTLKNFPFESNIDKNGSIMDAVKANQSI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +++ LS+AGRY VL+P + + +IS+KI + ++ LK + ++ Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYIVLVPFSER-VSISQKIESKEEKDRLKRLVLSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G GVI+RT + E+ +D + L+ W + + + P V E N +R Sbjct: 182 PK-GFGVIVRTVAEGKKVAELDQDLQNLLTKWSTMCKKLYKAEHPSKVLSEMNKASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + + I V E Y E K++++ + P IV+ Y+ P+F + G+E Q+ + Sbjct: 241 DIFNESFTGIQVDDEDLYYEIKEYVQKIAPKKESIVKLYQSKVPLFEKYGVERQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 V++ Y++I TEAL IDVNSG RS + EDTAL+ NL AA EIARQLRLRD+ Sbjct: 301 KTVSMSKGAYLVIEHTEALHVIDVNSGNRSNKAKTQEDTALEVNLIAAREIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IV+DFIDM ++ R++ LK +K DRA+ ++ S FGL++++RQR+R V Sbjct: 361 GGIIVIDFIDMTNAEHRRTLFDHLKTEMKDDRAKHKILPPSKFGLVQITRQRVRPEVNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN-IIVHTHSDVVLYLLNQKRAT 538 T + G + + + I +E L + N + ++TH + YL + Sbjct: 421 TREKNPN-GGGSEVEAPIVLVDKITTDLERILAKKDGFNGVTLNTHPFIAAYLTKGFPSI 479 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + ++ + Sbjct: 480 RFKWFLEHKKWVKILPRDAYTYLEYR 505 >gi|283457946|ref|YP_003362549.1| ribonuclease G and E [Rothia mucilaginosa DY-18] gi|283133964|dbj|BAI64729.1| ribonuclease G and E [Rothia mucilaginosa DY-18] Length = 1288 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 148/642 (23%), Positives = 260/642 (40%), Gaps = 44/642 (6%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ L+++ + + V+ SL + + Sbjct: 418 DRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 477 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G DV I+ +K +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 478 RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 537 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P S ISRK+ + + K + L P G GVI+RTA ++ E+ D Sbjct: 538 RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PEGAGVIVRTAAEGASEEELTHD 594 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ ++E A + ++Y+E +L+ + +RD++ +D + +IV GE + + Sbjct: 595 INRLRAQWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIE 654 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P ++Q++ +F I QL +V LPS G ++I++TEA+ + Sbjct: 655 AYVTYVAPDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 714 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 715 DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 774 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +L E L +DR + QV +++ GL++M+R+R+ + +LE ++ C +C G G + ++ Sbjct: 775 RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLVVHDQPLSG 834 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + + + R Sbjct: 835 RSGGASDYIHRHERNDRKRSRAAA------REDSRDQ----------------------- 865 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +K +++ + A S + + + +S Sbjct: 866 ----QKQDALESKKAERRNAMAAVAAASAHSEEASEETASTRKKRKRRKRSRRAETAELS 921 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E + D V++V+ N I + +E + E Sbjct: 922 LEQEIQGIAEAASEQAHAEVAQREDK--VAEVTE-GNWIGEQGGFSLEQLASAFDRVEEE 978 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 A G + D + E SS K +R KRR+ Sbjct: 979 SAEGSS--KDSAEERSDQERAEERRSSKRGEKKSSRNRKRRE 1018 Score = 87.7 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 ++ VL D + E + + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 430 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 489 Query: 75 HPD 77 + D Sbjct: 490 NWD 492 >gi|294812601|ref|ZP_06771244.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064] gi|294325200|gb|EFG06843.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064] Length = 1456 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 143/551 (25%), Positives = 247/551 (44%), Gaps = 17/551 (3%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 809 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 868 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 869 MGHGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 927 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W ++++ A + Sbjct: 928 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKSG 985 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P A + ++ Sbjct: 986 SAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSE 1045 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 1046 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 1105 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L +DR + QV +++ Sbjct: 1106 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 1165 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS---SVALSILRSVEEYLLQYTAHN 518 GL++M+R+R+ +LES ++ C +C G G I +V Sbjct: 1166 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPQAVGGGGGGGKRARKRGRGGAE 1225 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 ++ V A + + +A G Sbjct: 1226 HPHEHEQAAAPVPEPEQAPQTVAEVAAEVAEPVALPEPAFVPDEELYSSAAEAEAAAFRG 1285 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI--------RK 630 ++ S E ++ ++ S E + + E Sbjct: 1286 RGRRRATRRASAPAGAPRSTGSEVVIEAKETPSPEPVAPVVEPEAPQAPEAPADTEAAPP 1345 Query: 631 RRRRRRRRRPA 641 R RRR R+ + Sbjct: 1346 RARRRVTRKAS 1356 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 34/63 (53%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71 E T++ VL DN + E E GN+YL KV V PS++AAFVD G R+ L Sbjct: 800 GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA 859 Query: 72 LEI 74 E+ Sbjct: 860 GEV 862 >gi|326440951|ref|ZP_08215685.1| ribonuclease E [Streptomyces clavuligerus ATCC 27064] Length = 1372 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 143/551 (25%), Positives = 247/551 (44%), Gaps = 17/551 (3%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 725 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 784 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 785 MGHGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 843 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W ++++ A + Sbjct: 844 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKSG 901 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P A + ++ Sbjct: 902 SAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSE 961 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 962 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 1021 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L +DR + QV +++ Sbjct: 1022 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 1081 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS---SVALSILRSVEEYLLQYTAHN 518 GL++M+R+R+ +LES ++ C +C G G I +V Sbjct: 1082 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPQAVGGGGGGGKRARKRGRGGAE 1141 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 ++ V A + + +A G Sbjct: 1142 HPHEHEQAAAPVPEPEQAPQTVAEVAAEVAEPVALPEPAFVPDEELYSSAAEAEAAAFRG 1201 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI--------RK 630 ++ S E ++ ++ S E + + E Sbjct: 1202 RGRRRATRRASAPAGAPRSTGSEVVIEAKETPSPEPVAPVVEPEAPQAPEAPADTEAAPP 1261 Query: 631 RRRRRRRRRPA 641 R RRR R+ + Sbjct: 1262 RARRRVTRKAS 1272 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 34/63 (53%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71 E T++ VL DN + E E GN+YL KV V PS++AAFVD G R+ L Sbjct: 716 GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA 775 Query: 72 LEI 74 E+ Sbjct: 776 GEV 778 >gi|254392430|ref|ZP_05007611.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC 27064] gi|197706098|gb|EDY51910.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC 27064] Length = 1336 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 143/551 (25%), Positives = 247/551 (44%), Gaps = 17/551 (3%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 743 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 802 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 803 MGHGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 861 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W ++++ A + Sbjct: 862 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKSG 919 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P A + ++ Sbjct: 920 SAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSE 979 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 980 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 1039 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L +DR + QV +++ Sbjct: 1040 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 1099 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS---SVALSILRSVEEYLLQYTAHN 518 GL++M+R+R+ +LES ++ C +C G G I +V Sbjct: 1100 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPQAVGGGGGGGKRARKRGRGGAE 1159 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 ++ V A + + +A G Sbjct: 1160 HPHEHEQAAAPVPEPEQAPQTVAEVAAEVAEPVALPEPAFVPDEELYSSAAEAEAAAFRG 1219 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI--------RK 630 ++ S E ++ ++ S E + + E Sbjct: 1220 RGRRRATRRASAPAGAPRSTGSEVVIEAKETPSPEPVAPVVEPEAPQAPEAPADTEAAPP 1279 Query: 631 RRRRRRRRRPA 641 R RRR R+ + Sbjct: 1280 RARRRVTRKAS 1290 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 34/63 (53%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71 E T++ VL DN + E E GN+YL KV V PS++AAFVD G R+ L Sbjct: 734 GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA 793 Query: 72 LEI 74 E+ Sbjct: 794 GEV 796 >gi|288921987|ref|ZP_06416196.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f] gi|288346649|gb|EFC80969.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f] Length = 1058 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 127/345 (36%), Positives = 206/345 (59%), Gaps = 4/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++V+K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 537 GEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPD- 595 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + LK I + + G GVI+RTA ++ E++RD E L+ W+ Sbjct: 596 GQNAGISRKLPDTERAR-LKSILKKITPENG-GVIVRTAAEGASEAELERDVERLVAQWE 653 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A + AP L+Y E +L+ R IRD++ +D +E+IV G ++++ + P Sbjct: 654 DIQRKAQKASAPSLLYGEPDLVVRVIRDVFNEDFTELIVQGSTEAATVEEYVDTVAPDLR 713 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 VR+Y +F ++ QL +V LPS G ++I++TEA+ IDVN+G+ T + Sbjct: 714 DRVRRYVGTGDVFAEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKG 773 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 774 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRT 833 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 R QV +++ GL++M+R+R+ +LE+ ++ C +C G G Sbjct: 834 RHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCSGRGVTIHLD 878 Score = 98.9 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +M++ H + T++ VL D + E GN+YL +V V S++AAFVD Sbjct: 468 ERRMVV-RHHGDRTQIAVLEDGVLVEHFVTRASSTSYAGNVYLGRVQNVLASMEAAFVDI 526 Query: 62 GGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 527 GKGRNAVLYAGEVNYD 542 >gi|222530095|ref|YP_002573977.1| Rne/Rng family ribonuclease [Caldicellulosiruptor bescii DSM 6725] gi|222456942|gb|ACM61204.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor bescii DSM 6725] Length = 571 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 142/477 (29%), Positives = 232/477 (48%), Gaps = 14/477 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162 +D ++ I + S V I E + +A N N G Sbjct: 20 EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79 Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+P T Sbjct: 80 DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPCTEYVGVS 139 Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R + ++ + + P GMG+I+RTA ++++ +K + E+L +W +R Sbjct: 140 KRIESEEERQR-----LKEIACRIRPEGMGLIVRTAAENKSEEILKSELEFLKNMWKKIR 194 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + + S AP L+Y++ +L+ +A+RD++ + +++ K Y + +F+ PS V Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + IF IE +L V L S GY++I++TEAL IDVN+G+ + + Sbjct: 254 EYFNLATNIFEYFQIEQKLSKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+ + + V LKE+LK+D+ + V Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPDHQKIVLDALKEALKRDKTKTVV 373 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 I+ GL+EM+R+++R + C YC+G G I S SVA +L+ +E Y Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSNCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 V H+ V L + I E E ++ I + + F I Sbjct: 434 DKFFVEIHTKVCEILRKGEIDRIKELEQKYKKKIYIKASSNIHINKFTICPVKDEDH 490 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S +TRV VL D + E+ E E + I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G ++ FL +++ +YY+I Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87 >gi|299139560|ref|ZP_07032734.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX8] gi|298598488|gb|EFI54652.1| ribonuclease, Rne/Rng family [Acidobacterium sp. MP5ACTX8] Length = 1177 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 147/465 (31%), Positives = 242/465 (52%), Gaps = 2/465 (0%) Query: 102 AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161 A P E + + + D GG P Sbjct: 713 EEAVASGEEGEARPAQREGERRGRRDGRRGGRGDRNGDRGSRDKRGMANSRPGGRPGRHS 772 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 + I +++K Q +LVQI KE KGA +T++++L GR+ V MP + +SR Sbjct: 773 VQATDLPAISDLLKPGQEVLVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHVG-VSR 831 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + +R+ LKEI + A G I+RTA + ++ E++ D +L+ LW ++++ + + Sbjct: 832 KIDSDGERRRLKEILLSEKGDASGGFIVRTAASGASEEELRSDLRFLLNLWADIKQRSES 891 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 S +P L+Y + NL++R +RD + S I V E Y F++ PS R V+ Y Sbjct: 892 SKSPALIYHDLNLVERILRDQVTDNFSAIWVDTETEYERVLRFLQRFQPSLIRRVKLYTK 951 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI-EDTAL 400 P+F + GI +++ +++V L S G ++INQTEALV+ID+N+G+ + EDT + Sbjct: 952 ETPLFEQFGITEEINKALRSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIV 1011 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 +TNL+A EI RQ+RLRDL G+I++DFIDM+E+KN V L+E LKKDRA +V + Sbjct: 1012 KTNLDAIPEIVRQIRLRDLGGIIIIDFIDMDERKNRHKVMAALEEELKKDRAPSKVLQFN 1071 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 +FGL+ ++R+R++ S+ + + C C G G ++S +V I + + +I+ Sbjct: 1072 DFGLVAITRKRVKQSLERTLSTTCGICAGTGMVKSPITVCNDIYIEMRKMHKHLDKGDIM 1131 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + +VV L + + E E G +I V L + F I Sbjct: 1132 LRVNPEVVKQLKSGSGKWLQEMEEMSGKTILVKSDPSLHPEQFDI 1176 Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++ I +S ETR+ ++ + + E+ +E E++ + G+IY +VTRV P +Q++FVD Sbjct: 1 MSKEIYI-SSTPHETRLAIVEKDELTEIYYERENEYTLAGSIYNGRVTRVLPGMQSSFVD 59 Query: 61 YGGNRHGFLPFLE 73 G R FL + Sbjct: 60 IGLERDAFLYITD 72 >gi|29832008|ref|NP_826642.1| hypothetical protein SAV_5465 [Streptomyces avermitilis MA-4680] gi|29609126|dbj|BAC73177.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 1387 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 151/606 (24%), Positives = 267/606 (44%), Gaps = 11/606 (1%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + S V + + S+ +A D+ V G + Sbjct: 634 EDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 693 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 694 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 752 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W+++++ A + Sbjct: 753 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSG 810 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D +++IVSG++ + ++ + P + + ++ Sbjct: 811 NAPTLLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWETIHGYVAHVAPDLSDRLSKWTSE 870 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T + +E+T + Sbjct: 871 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTR 930 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 931 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 990 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++M+R+R+ +LES ++ C +C G G I + + A + Sbjct: 991 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGKRKKRGRGGAEQELP 1050 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 H H L + E V+ V + L + ++ A Sbjct: 1051 HEHE---HELAQEPEPDEAVAETEAEVAAEVAAPVALPAPGYEPDEELYSSAAEAEAAAS 1107 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 S+ + + A P+S + E + + E+ + + Sbjct: 1108 RGRSRRRATRRASAPAGAPRAEERAPRSRAEERAPKSRAAAEAEPMAVEDPVVEPPVAAE 1167 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD--VSIPPVST 699 + V V+ + + + A G E S P Sbjct: 1168 PVVAEPVVAEPVAVAEEEAAPKGRTRRRATRKVSAPAGSPKAAGEAETVTVVASAPEAEE 1227 Query: 700 PEMESS 705 P+ E Sbjct: 1228 PKAEQP 1233 Score = 92.0 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAF+D G Sbjct: 616 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIG 675 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 676 KGRNAVLYAGEV 687 >gi|187251780|ref|YP_001876262.1| ribonuclease [Elusimicrobium minutum Pei191] gi|186971940|gb|ACC98925.1| Ribonuclease, Rne/Rng family [Elusimicrobium minutum Pei191] Length = 483 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 125/420 (29%), Positives = 229/420 (54%), Gaps = 7/420 (1%) Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 N+ K + I++VIK Q ++VQ+VK+ G KG +T ++L GR+ Sbjct: 66 NIGYEKNAYLYISDVLGDEKKNIEKVIKKGQEIMVQVVKDAIGTKGMKITMDVTLPGRFL 125 Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGL--EVPAGMGVILRTAGASRTKIEIKRDF 265 VL P+ S +S+ I + +R L ++ + L + GMG I+RT TK E++R+ Sbjct: 126 VLTPHQS-FVGVSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEATKDELEREV 184 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 +YL R W ++ +P +++E+ + + + RD+ ++I + +K Y DF+ Sbjct: 185 KYLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKKDYENVLDFV 244 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 P ++ Y+ PIF IE ++D+L +T+++LP+ G +II + E+L +IDVN Sbjct: 245 SKNSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEAESLCAIDVN 304 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 +G+ T E+T QTN+EAA+E+A QLRLR++ G++V+DFIDM++ N V + L + Sbjct: 305 TGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNRHRVVEALAD 364 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 ++ +DRA++++ I+ GL+EM+R+R + S T+ C C G+G + S S+ + I R Sbjct: 365 AVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSAESMRIKIQR 424 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + N+ + H ++ + +Q+ E S+ + +L+ + + I Sbjct: 425 EIYDLTQGRPGGNLRIVLHPELADQIKHQQSV----IEQNIHRSMKIQSDAQLSWEDYKI 480 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%) Query: 1 MAN-------KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPS 53 M+ ++L + S EETRV ++ + R+ EL +E I GNIY A V V P Sbjct: 1 MSKTSTGLKVEVLANTSF-EETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPG 59 Query: 54 LQAAFVDYGGNRHGFLPFLEI 74 + +AFV+ G ++ +L ++ Sbjct: 60 ISSAFVNIGYEKNAYLYISDV 80 >gi|313159815|gb|EFR59171.1| ribonuclease, Rne/Rng family [Alistipes sp. HGB5] Length = 516 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 196/406 (48%), Gaps = 3/406 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + ++ I + ++ Q ++VQI KE KG +T +SLAGR VL+P +SK Sbjct: 97 ESMKLEPPVEKSGKIGDYLQVGQNIMVQIAKEAISTKGPRLTADISLAGRNVVLVPFSSK 156 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + ++ + A L P GVI+RTA +I+ D + + W Sbjct: 157 VFLSQKIRSVDEKKRLKRIAAAVL--PKNFGVIIRTAAMEAKDEDIEHDIQTQIDRWRKT 214 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + AP + E N IRD S+I V E Y + + +++ + P +I Sbjct: 215 CAAIKKNTAPAQLMSEMNRANTIIRDSLNGSFSQIAVDDEAMYNDIRGYIRQIEPEKEKI 274 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-EHC 394 V+ Y PIF I Q+ SL V+L Y+II TEA+ IDVNSG T+ E Sbjct: 275 VKLYRGNVPIFDNFDISKQIKSLFAKYVSLRRGAYLIIEHTEAMNVIDVNSGNRTKAEDN 334 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 E TA+ NL AA EIARQLRLRDL G++++DFID+ + +N +++ ++ + + D+A+ Sbjct: 335 QEQTAMDVNLAAAAEIARQLRLRDLGGIVIIDFIDLRKAQNRQALYDEMVKLMATDKAKH 394 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 V ++ FGL++++RQR+R +E + VC C G+G I + I + Sbjct: 395 TVLPLTKFGLMQITRQRVRPVAVEEVSDVCPTCNGSGKIEPTVLLDKKIENQISFLTHDR 454 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 I + V +L + ++ ++ V ++VV L Sbjct: 455 GHKYIKLVVSPYVASFLKQGLWSLRRRWQWKYKVRLHVVADQSLGI 500 >gi|254796520|ref|YP_003081356.1| ribonuclease, Rne/Rng family [Neorickettsia risticii str. Illinois] gi|254589758|gb|ACT69120.1| ribonuclease, Rne/Rng family [Neorickettsia risticii str. Illinois] Length = 549 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 136/452 (30%), Positives = 222/452 (49%), Gaps = 5/452 (1%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 E + + EVIK +L VQ+ KE+R K +T Y+ L GRY VLMP K Sbjct: 90 EGKHINLYKHFNATEVIKKGLVLFVQVTKEKRRTKDVTLTAYVKLPGRYCVLMPFL-KDL 148 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 +S++I + L GV+ + A K I D+ L+ W+ V Sbjct: 149 ILSKQIVDEQAVSRLTHFVEEEMANRKYGVVFKPYCADADKKNIFGDYCSLLSEWEKVVS 208 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 S AP LV+ E NL+K+ +RD Y + E+IV+ Y+EAKD+++ + + Sbjct: 209 QNDKSKAPRLVFREANLVKKFLRDSYDASVGEVIVNHSDVYQEAKDYIENSLHFENPNIT 268 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 Y D P+F + +E Q++SL++ + L + Y++IN TEAL ++DVNSGR +E IE+ Sbjct: 269 LYSDTFPVFDKYKVEPQVESLYEETIYLRNGAYIVINTTEALTAVDVNSGRMKKESNIEE 328 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 TA + N+EA EI R L LR +AG++V+DFIDM K +VE+ L ++ K+ R+RVQ+ Sbjct: 329 TAYKVNMEAVGEIVRHLELRGIAGIVVIDFIDMNNSKYMLNVERALLDAFKRYRSRVQIA 388 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 I+ FGL+ +S+QR + ++L+S T C C+G G + + ++ Sbjct: 389 PINKFGLIALSKQRTKHNILDSHTVKCPCCEGKGKVLKLEHQVRKVFSAIY---TAPRCK 445 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIEKGSPVQALVN 576 + V + ++ + + N R + + E G SI I +L F I + Sbjct: 446 EVTVTANPELAVAIFNGYRKMLAQAEEVVGGSIVFKIDEKLGLAKGFEIAFNEKDDVQIL 505 Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 +V + + S +K + + Sbjct: 506 RDDQVVTTVEEQSNEKTVTKGSAVVEVESRRS 537 Score = 92.0 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K+LID+ ETR+ +LR + D E KGNIY V +V+ SLQAAFV+Y Sbjct: 2 KKILIDSREG-ETRLAILRSGLLVGYDCEHTSSLPQKGNIYQGIVFKVDDSLQAAFVEYL 60 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKE 92 +GFLPF EI Y+ + + + E Sbjct: 61 PGEYGFLPFSEIPVVYFDLLEEVKANAIAE 90 >gi|332184903|gb|AEE27157.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Francisella cf. novicida 3523] Length = 498 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 122/422 (28%), Positives = 223/422 (52%), Gaps = 2/422 (0%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V +E S E+ K I + ++ Q +LVQ+VKE GNKG +T++LS++ Sbjct: 74 EVIPLEKDDEDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P+ + ++ L+ I + + G ILRTA + E++ D Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 ++L LW ++ +++ + P +VYE+ +LI + I ++ +I+V Y+E F Sbjct: 194 IKFLNNLWQDILDISSTIIRPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 +P + Y H IF IE +++ V L S GY++I QTEA+++ID+ Sbjct: 254 ADKYIPGLRDKIELY-QKHSIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G +E+T +TNLEA +EIARQLRLR+L G+I++DFIDM ++ + V + LK Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHKNQVLEALK 372 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + L+ D+A+ V IS GL+EM+R+R+ S+L + + C +C G G +++ ++ I Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVKTLQTICYDIF 432 Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R ++ Y + ++ ++ + ++ Y+ ++ + E E +I++ + + Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQY 492 Query: 564 YI 565 I Sbjct: 493 DI 494 >gi|331695829|ref|YP_004332068.1| ribonuclease, Rne/Rng family [Pseudonocardia dioxanivorans CB1190] gi|326950518|gb|AEA24215.1| ribonuclease, Rne/Rng family [Pseudonocardia dioxanivorans CB1190] Length = 1200 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 200/371 (53%), Gaps = 9/371 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + +LVQ+ K+ G+KGA +TT +SLAGR+ V +P+ Sbjct: 482 GEVDWDAAGLNGKARRIEQALSTGDSVLVQVTKDPIGHKGARLTTQISLAGRFLVYVPSG 541 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ LK++ + + GVI+RTA T+ ++RD L W+ Sbjct: 542 GTAG-ISRKLPDTERKR-LKDMLKEIVPA-EAGVIIRTASEGVTQEALERDVRRLQAQWE 598 Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 VR AP L+YEE +L+ + +RD + +D S ++VSG+ + +++ + Sbjct: 599 VVRSKADATGPNKVKAPALLYEEPDLLVKVVRDQFNEDFSRLVVSGDDAWDTVSNYIGHV 658 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P + + ++ P +F I+ QL +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 659 APELSDRLHRHVGPTDVFTEYRIDEQLLKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK 718 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L Sbjct: 719 FTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLTECL 778 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 +DR R QV +++ GL++M+R+R+ +LE + C +C+G G I S V Sbjct: 779 ARDRTRHQVAEVTSLGLVQMTRKRVGGGLLEHFSTQCEHCRGRGVIVSTEGVEAKGEHKQ 838 Query: 508 EEYLLQYTAHN 518 Sbjct: 839 GGDRQHERDGK 849 Score = 91.6 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 11 HVEETRVVVLRDNRVEELDFES------EHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 H + + VL D + E + GNI+L +V V PS++AAFVD G Sbjct: 415 HGDRVEIAVLEDGVLVEHFVADGPASSGSAASSMVGNIHLGRVQNVLPSMEAAFVDIGRG 474 Query: 65 RHGFLPFLEIHPD 77 R+ L E+ D Sbjct: 475 RNAVLYAGEVDWD 487 >gi|297160532|gb|ADI10244.1| ribonuclease, Rne/Rng family [Streptomyces bingchenggensis BCW-1] Length = 1410 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 155/600 (25%), Positives = 266/600 (44%), Gaps = 36/600 (6%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + S V + + S+ +A D+ V G + Sbjct: 729 EDNVLVEHFVNKEQSNSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 788 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 789 LANGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 847 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E+ RD + L W+ +++ A N Sbjct: 848 LPDTERAR--LKQILKKIVPEDAGVIVRTAAEGASEDELSRDVQRLQAQWEEIQKKAKNG 905 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P A ++++ Sbjct: 906 GAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWDTIHGYVSHVAPDLADRLQRWTSD 965 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T + +E+T + Sbjct: 966 VDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTR 1025 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 1026 NNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 1085 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS-------------------SVALS 502 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 1086 LGLVQMTRKRVGQGLLESFSEPCVHCNGRGLIVHVDQPTAVGGGGGKRKKKKGAAGHLAE 1145 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL-ADK 561 + E + A +V + V ++ E + EL + Sbjct: 1146 PEQVPETAEVVEAAAAAVVEAEPETVAEAAHEAAEHKTMPE-----PVTFAADEELYSSA 1200 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW-----QDEALLPIPKSESLEDIQ 616 + + KV + + AP + E ++ P P E + + Sbjct: 1201 AEAEAAATRGRTRRRATRKVTAPAGAPKAAERPEAAVVVVPAEEPKEAPAPAEEPKAEAE 1260 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 E + +RR R+ PA + + V D + + EP + Sbjct: 1261 PVAAPEPVSAPRARRRVTRKVTAPAGSPSGSEEAAVVVVSAAAQDSAPESAPEPVAVEPE 1320 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ + E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 711 ERVMVVRQNGERTQIGVLEDNVLVEHFVNKEQSNSYVGNVYLGKVQNVLPSMEAAFVDIG 770 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 771 KGRNAVLYAGEV 782 >gi|290969207|ref|ZP_06560732.1| S1 RNA binding domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290780713|gb|EFD93316.1| S1 RNA binding domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 477 Score = 227 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 116/555 (20%), Positives = 215/555 (38%), Gaps = 92/555 (16%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71 EETR+ VL D ++ + E + + I +IY + + P+LQAAFV+ G ++ F+ Sbjct: 10 PEETRLAVLEDGKLRDYAVERDDESHIVNHIYAGTIQNILPALQAAFVNIGRKKNAFIYM 69 Query: 72 LEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQ 131 ++ P R A +E + ++ G + E+ A + Sbjct: 70 GDLFP---------RAATKEEIQQTR---------ISVGQHILVQVVKEEQGGKGAKVTA 111 Query: 132 ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGN 191 + V V K E+ + +R + V ++++ V E Sbjct: 112 NISLPGRYAVLMPTVDYVGVSKKIRQEEERDRLRR--IVGHVKPPGMGVIIRTVAEG--- 166 Query: 192 KGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRT 251 VT A +L + + ++ L +++RT Sbjct: 167 ----VTEEALQADITYLLHT------------WDSIRQRYKLAKKNQLLYR-EADLVMRT 209 Query: 252 AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311 T ++ + +R + E + Sbjct: 210 VRDHVTADI------------------------EKIIVNHPDTYERIRQVFPDPTWQEKL 245 Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371 + Y P+F IE ++ L +V LPS G + Sbjct: 246 I-------------------------YYTGKEPVFEAYHIEDEVRHLWSRQVALPSGGNL 280 Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431 I + TEAL IDVNS + T +++T N EAA+EIARQLRLRD+ G+I+VDFIDM Sbjct: 281 IFDYTEALTVIDVNSSKYTGNSTLQETIFHVNKEAAKEIARQLRLRDIGGIILVDFIDMA 340 Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 ++ ++ L D + +V ++ L+E++R++ R S+ + CT C G G Sbjct: 341 RAEDREAILAILSRETASDTRKTRVMGMTALNLVEITRKKSRQSLFQVQYTPCTVCGGTG 400 Query: 492 YIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 Y+ + SVAL I+R + + + + ++++ H+ V+ + ++ + +E S+ Sbjct: 401 YLYAAESVALQIMRRLRQLVRERRLRGDVLIVAHASVLAVMR--EKKQVARWERELARSL 458 Query: 551 NVVIGIELADKLFYI 565 + + ++F I Sbjct: 459 HFEESVHANREVFSI 473 >gi|260888407|ref|ZP_05899670.1| cytoplasmic axial filament protein [Selenomonas sputigena ATCC 35185] gi|330838279|ref|YP_004412859.1| ribonuclease, Rne/Rng family [Selenomonas sputigena ATCC 35185] gi|260861943|gb|EEX76443.1| cytoplasmic axial filament protein [Selenomonas sputigena ATCC 35185] gi|329746043|gb|AEB99399.1| ribonuclease, Rne/Rng family [Selenomonas sputigena ATCC 35185] Length = 479 Score = 227 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 130/435 (29%), Positives = 221/435 (50%), Gaps = 3/435 (0%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 + A+ + V + + V I + + +A D+ Sbjct: 9 APEETRMAIVESDELLAVEVERESQSHLVGNIYKGQVQNVLPGMQAAFVDIGWEKNAFLY 68 Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 + ++ + I Q L VQI K+ G KG T +LS+ GR VLMP + Sbjct: 69 IGDGVPHEGAQKTTPV-ARIHIGQRLPVQITKDAIGTKGPRATMHLSIPGRNVVLMPTAA 127 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 ISR+I +R L+EIA + GMG+I+RTA +T+ + D + L+RLW Sbjct: 128 YIG-ISRRIEGEAERARLREIAARICPA-GMGLIIRTAAHGQTEESFQEDVDRLVRLWQT 185 Query: 275 VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 ++ + AP L+Y + +LI R +RD + ++I + + R K+ ++ + P A+ Sbjct: 186 LQAKNKMAKAPALLYRDADLIVRLVRDSFTEEIDALYIDDADACRRVKELVESISPELAQ 245 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 V YE+ P+F R G+E +++ L + EV LPS G ++I++TEAL +IDVN+GR + Sbjct: 246 RVHLYEEREPLFRRYGVEGEIERLGEREVVLPSGGSIVIDKTEALTAIDVNTGRYVGKAN 305 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 + DT +TNLEAA EI +Q+RLRD+ G+I+VDFIDM+ + + L++ ++ DR + Sbjct: 306 LGDTVYRTNLEAAAEILKQIRLRDIGGIILVDFIDMDTDEQKEKLLAFLRDRVRFDRTKT 365 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 + I+ GL+E++R++ R ++ C YC G G + S ++A+ I R + + Sbjct: 366 NIVDITALGLIEITRKKSRQNLESIIYSPCPYCHGRGRVESPETIAIRICRDIRRLESKA 425 Query: 515 TAHNIIVHTHSDVVL 529 A + S + Sbjct: 426 HAGAYEIEVASRIAR 440 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +L++ + EETR+ ++ + + ++ E E + + GNIY +V V P +QAAFVD G Sbjct: 2 KTILVNCA-PEETRMAIVESDELLAVEVERESQSHLVGNIYKGQVQNVLPGMQAAFVDIG 60 Query: 63 GNRHGFLPFLE 73 ++ FL + Sbjct: 61 WEKNAFLYIGD 71 >gi|56708790|ref|YP_170686.1| ribonuclease G [Francisella tularensis subsp. tularensis SCHU S4] gi|110671262|ref|YP_667819.1| ribonuclease G [Francisella tularensis subsp. tularensis FSC198] gi|118498334|ref|YP_899384.1| ribonuclease G [Francisella tularensis subsp. novicida U112] gi|134302803|ref|YP_001122771.1| ribonuclease [Francisella tularensis subsp. tularensis WY96-3418] gi|187932318|ref|YP_001892303.1| ribonuclease G [Francisella tularensis subsp. mediasiatica FSC147] gi|194323921|ref|ZP_03057696.1| ribonuclease, Rne/Rng family [Francisella tularensis subsp. novicida FTE] gi|208780100|ref|ZP_03247443.1| ribonuclease, Rne/Rng family [Francisella novicida FTG] gi|224458006|ref|ZP_03666479.1| ribonuclease G [Francisella tularensis subsp. tularensis MA00-2987] gi|254372002|ref|ZP_04987495.1| ribonuclease G [Francisella tularensis subsp. novicida GA99-3549] gi|254375144|ref|ZP_04990624.1| hypothetical protein FTDG_01334 [Francisella novicida GA99-3548] gi|254875661|ref|ZP_05248371.1| ribonuclease G [Francisella tularensis subsp. tularensis MA00-2987] gi|56605282|emb|CAG46437.1| Ribonuclease G [Francisella tularensis subsp. tularensis SCHU S4] gi|110321595|emb|CAL09820.1| Ribonuclease G [Francisella tularensis subsp. tularensis FSC198] gi|118424240|gb|ABK90630.1| ribonuclease G [Francisella novicida U112] gi|134050580|gb|ABO47651.1| Ribonuclease, Rne/Rng family [Francisella tularensis subsp. tularensis WY96-3418] gi|151569733|gb|EDN35387.1| ribonuclease G [Francisella novicida GA99-3549] gi|151572862|gb|EDN38516.1| hypothetical protein FTDG_01334 [Francisella novicida GA99-3548] gi|187713227|gb|ACD31524.1| ribonuclease G [Francisella tularensis subsp. mediasiatica FSC147] gi|194321818|gb|EDX19301.1| ribonuclease, Rne/Rng family [Francisella tularensis subsp. novicida FTE] gi|208744104|gb|EDZ90405.1| ribonuclease, Rne/Rng family [Francisella novicida FTG] gi|254841660|gb|EET20096.1| ribonuclease G [Francisella tularensis subsp. tularensis MA00-2987] gi|282160122|gb|ADA79513.1| Ribonuclease, Rne/Rng family protein [Francisella tularensis subsp. tularensis NE061598] gi|332679075|gb|AEE88204.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Francisella cf. novicida Fx1] Length = 498 Score = 227 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 122/422 (28%), Positives = 223/422 (52%), Gaps = 2/422 (0%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V +E S E+ K I + ++ Q +LVQ+VKE GNKG +T++LS++ Sbjct: 74 EVIPLEKEDDDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P+ + ++ L+ I + + G ILRTA + E++ D Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 ++L LW ++ +++ + P +VYE+ +LI + I ++ +I+V Y+E F Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 +P + Y H IF IE +++ V L S GY++I QTEA+++ID+ Sbjct: 254 ADKYIPGLREKIELY-QKHNIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G +E+T +TNLEA +EIARQLRLR+L G+I++DFIDM ++ + V + LK Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALK 372 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + L+ D+A+ V IS GL+EM+R+R+ S+L + + C +C G G +++ ++ I Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIF 432 Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R ++ Y + ++ ++ + ++ Y+ ++ + E E +I++ + + Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQY 492 Query: 564 YI 565 I Sbjct: 493 DI 494 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 41/63 (65%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E R+ + +N ++E+ E +++K+I GNIY K+ RV P +QAAFVD G + GFL E Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74 Query: 74 IHP 76 + P Sbjct: 75 VIP 77 >gi|312621612|ref|YP_004023225.1| ribonuclease, rne/rng family [Caldicellulosiruptor kronotskyensis 2002] gi|312202079|gb|ADQ45406.1| ribonuclease, Rne/Rng family [Caldicellulosiruptor kronotskyensis 2002] Length = 571 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 141/477 (29%), Positives = 232/477 (48%), Gaps = 14/477 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA--NNDVVSNVEDVKGGSPEDVPK 162 +D ++ I + S V I E + +A N N G Sbjct: 20 EDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVNIGQEKNAFLYLGDVNRLEFG 79 Query: 163 KFKRQYCIQEVI---KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 Y I+ + Q ++VQ++KE KG VTT ++L GRY VL+P T Sbjct: 80 DTDEYYEIKTNPLALRCGQEIVVQVIKEGYDQKGPRVTTNITLPGRYLVLLPCTEYVGVS 139 Query: 220 SRKITNPVDRKNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R + ++ + + P GMG+I+RTA S+++ +K + E+L +W +R Sbjct: 140 KRIESEEERQR-----LKEIACRIRPEGMGLIVRTAAESKSEEILKSELEFLKNMWKKIR 194 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 + + S AP L+Y++ +L+ +A+RD++ + +++ K Y + +F+ PS V Sbjct: 195 QKSCQS-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSSYAPSLKSKV 253 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 + IF IE +L V L S GY++I++TEAL IDVN+G+ + + Sbjct: 254 EYFNLATNIFEYFQIEQKLSKALSKRVWLKSGGYIVIDETEALTVIDVNTGKYVGKTDVA 313 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T L+TNLEAA+EIARQLRLRD+ G+I++DFIDM+ + + V LKE+LK+D+ + V Sbjct: 314 ETILKTNLEAAQEIARQLRLRDIGGIIIIDFIDMKNPDHQKIVLDALKEALKRDKTKTVV 373 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 I+ GL+EM+R+++R + C YC+G G I S SVA +L+ +E Y Sbjct: 374 VDITPLGLVEMTRKKVRQRLSCVMQSNCPYCEGTGKILSPESVAFKVLKEIEWYCKNKVE 433 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 V ++ V L + I + E ++ I + + F I Sbjct: 434 DKFFVEINTKVCEILRKGEIDRIKDLEQKYKKKIYIKASSNIHINKFTICPVKDEDH 490 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D S +TRV VL D + E+ E E + I GNIY V + P + AAFV+ Sbjct: 1 MQSEIIVDVSF-NQTRVAVLEDKELVEIYIEREDSQSIVGNIYKGVVENILPGMDAAFVN 59 Query: 61 YGGNRHGFLPFLEIHP-------DYYQI 81 G ++ FL +++ +YY+I Sbjct: 60 IGQEKNAFLYLGDVNRLEFGDTDEYYEI 87 >gi|330995081|ref|ZP_08318998.1| S1 RNA binding domain protein [Paraprevotella xylaniphila YIT 11841] gi|329576657|gb|EGG58160.1| S1 RNA binding domain protein [Paraprevotella xylaniphila YIT 11841] Length = 525 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 122/401 (30%), Positives = 202/401 (50%), Gaps = 4/401 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + +Q ++ Q +LVQIVKE KG +T LS GR+ VLMP K S+ + Sbjct: 108 KDGSVQTTLQQGQEILVQIVKEPISTKGPRLTCELSFPGRFLVLMPFQDKVSVSSKIKSA 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVA 284 + + P GVI+RT + E+ + + L++ ++ A S Sbjct: 168 EERAR--LKQLIQSIKPKNFGVIVRTVAEGKRVAELDSELKVLVKRCEDAFIKAQKASKL 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LV+EE + +RDL+ I ++ + E KD++ L+ P A IV+QY P Sbjct: 226 PELVFEETSRTVAMLRDLFNPSYENIYINDTDIFNEVKDYVTLIAPESAGIVKQYTGKLP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTN 403 IF + Q+ S V+ Y+II TEAL +DVNSG ++ ++ AL N Sbjct: 286 IFDNFDVTKQIKSSFGKTVSYKHGAYLIIEHTEALHVVDVNSGNRSKSKDGQEANALDVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + +++ E++KKDRAR + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQKLYERMCENMKKDRARHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R + + +VC C G G ++S + + + N +H Sbjct: 406 LMQITRQRVRPVMDVNVDEVCPTCFGKGTVKSSFLFTDVLESKISTMANKLGIKNFTLHV 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 H V Y+ + +++ ++G + V+ +L + Sbjct: 466 HPYVAAYINQGIVSLKRKWQVKYGFGLKVIPSQKLGFLQYE 506 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D +E + +L D R+ E E + GNIYLAKV ++ P L A FV+ Sbjct: 1 MTSEVIVDV-QPKEISIALLEDKRLVEFQKEGRSASFVVGNIYLAKVRKLMPGLNACFVN 59 Query: 61 YGGNRHGFLPFLEIHP------DYYQIPFSDRQAL 89 G R FL +L++ P Y + SD++ L Sbjct: 60 VGYERDAFLHYLDLGPKFNSYTKYLKQVTSDKKKL 94 >gi|256824998|ref|YP_003148958.1| RNAse G [Kytococcus sedentarius DSM 20547] gi|256688391|gb|ACV06193.1| RNAse G [Kytococcus sedentarius DSM 20547] Length = 959 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 131/495 (26%), Positives = 225/495 (45%), Gaps = 9/495 (1%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 Q I+ ++ Q +LVQ+ K+ G+KGA +T +SL GRY V +P + ISRK Sbjct: 394 PKGEQKRIESALQPGQPVLVQVTKDPIGHKGARLTGQISLPGRYLVYVPGNTTTG-ISRK 452 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + K VPA GVI+RTA + E++ D E L W+ + Sbjct: 453 LPDTERARLKK--ILKDVVPADAGVIVRTAAEGAAEAELRADVERLTTQWERIAAAQAKG 510 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP LV+ E +L R IRD++ +D ++++VSG + ++ + P + ++E Sbjct: 511 SAPTLVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESVTSYIDAVAPDLTPKLERWEGE 570 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F IE Q+ +V LPS G +I ++TEA+ +DVN+G+ +E+T + Sbjct: 571 QDVFEHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMTVVDVNTGKFVGSGGNLEETVTK 630 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 N+EAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +DR + QV +++ Sbjct: 631 NNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLARDRTKHQVAEVTS 690 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++M+R+R+ S ++E + C +C G G + + VA+ S + Sbjct: 691 LGLVQMTRKRVGSGLVEVYGETCEHCDGHGLVVQDAPVAVRGGGSGGGRRSGRQSGKEGR 750 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 ++ + + + E + G ++ Sbjct: 751 QQGEAQAAP--RSSGPSVAQIARAVHAA-ALKGDEEGLPEEQA--AGGTDESAPQAPAAA 805 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + + + E +++ P + + ++ ++G R RR A Sbjct: 806 AEGATDDAAEGVAEQAPREQTRAEQPATAPKAAAETASPAQATSGDAPAVTGRIGRRSAA 865 Query: 642 TDHHDAGVVSDVSSI 656 V + SS Sbjct: 866 PVESAPQVGDEESSS 880 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71 E T+V VL D + E + + + + GN+YL +V V PS++AAFVD G R+G L Sbjct: 324 AEYTQVGVLEDGVLVEHYIDRQQQTTMVGNVYLGRVQNVLPSMEAAFVDIGKGRNGVLYA 383 Query: 72 LEIHPDYYQIPFSDRQAL 89 E++ D +P +++ + Sbjct: 384 GEVNWDAAGLPKGEQKRI 401 >gi|294629329|ref|ZP_06707889.1| ribonuclease, Rne/Rng family domain-containing protein [Streptomyces sp. e14] gi|292832662|gb|EFF91011.1| ribonuclease, Rne/Rng family domain-containing protein [Streptomyces sp. e14] Length = 813 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 134/427 (31%), Positives = 224/427 (52%), Gaps = 8/427 (1%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + ++ V + + S+ +A D+ V G + Sbjct: 294 EDDVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 353 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 354 MSGGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 412 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W+ +++ + N Sbjct: 413 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIKKKSKNG 470 Query: 283 -VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 AP L+Y E ++ R +RD++ +D S++IVSG++ + ++ + P A + ++ Sbjct: 471 GSAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLAPRLSRWTS 530 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTAL 400 +F I+ QL +V LPS G ++I++TEA+V IDVN+G+ T + +E+T Sbjct: 531 EVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVT 590 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 + NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV ++ Sbjct: 591 RNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVT 650 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 + GL++M+R+R+ +LES ++ C +C G G I + + A Sbjct: 651 SLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSAGAAGGKRRKRARAGA-EPH 709 Query: 521 VHTHSDV 527 H H V Sbjct: 710 EHEHEAV 716 Score = 93.9 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ H + T++ VL D+ + E E GN+YL KV V PS++AAF+D G Sbjct: 276 ERVMVVRQHGDRTQIGVLEDDVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIG 335 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 336 KGRNAVLYAGEV 347 >gi|254368431|ref|ZP_04984448.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC022] gi|157121325|gb|EDO65526.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC022] Length = 498 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 121/417 (29%), Positives = 221/417 (52%), Gaps = 2/417 (0%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 E S E+ K I + ++ Q +LVQ+VKE GNKG +T++LS++ R+ V Sbjct: 79 EKEDDDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSSRFLVF 138 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 +P+ + ++ L+ I + + G ILRTA + E++ D ++L Sbjct: 139 LPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELENDIKFLN 198 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 LW ++ +++ + P +VYE+ +LI + I ++ +I+V Y+E F + Sbjct: 199 NLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHFADKYI 258 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P + Y H IF IE +++ V L S GY++I QTEA+++ID+N+G Sbjct: 259 PGLREKIELY-QKHNIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDINTGGF 317 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 +E+T +TNLEA +EIARQLRLR+L G+I++DFIDM ++ + V + LK+ L+ Sbjct: 318 IGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALKKELEL 377 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 D+A+ V IS GL+EM+R+R+ S+L + + C +C G G +++ ++ I R ++ Sbjct: 378 DKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIFREIKS 437 Query: 510 YLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + ++ ++ + ++ Y+ ++ + E E +I++ + + I Sbjct: 438 ESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQYDI 494 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 41/63 (65%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E R+ + +N ++E+ E +++K+I GNIY K+ RV P +QAAFVD G + GFL E Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74 Query: 74 IHP 76 I P Sbjct: 75 IIP 77 >gi|309389483|gb|ADO77363.1| ribonuclease, Rne/Rng family [Halanaerobium praevalens DSM 2228] Length = 560 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 132/442 (29%), Positives = 222/442 (50%), Gaps = 2/442 (0%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + K ++ I+ V++ Q L+VQ+VKE G+KGA VT +S+ GR+ V +P+ +K Sbjct: 79 NDQKKKLSQKDLNIKHVLQPGQWLMVQVVKEPMGSKGAKVTCKISIPGRFFVYIPSDNKI 138 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 R + + + G+I+RT + +++ D+ +L W +R Sbjct: 139 GISRRIDDDGERGR--LKSIAQDLKNGKEGLIIRTNARDESYTKLQNDYNFLSGTWKRIR 196 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 ++Y+E +L+K IRD + I ++V +K Y+ D + P + Sbjct: 197 NDFFKKNNIDILYQEEDLLKNLIRDYLDEKIDRVVVDDKKDYQRLIDLTSVFAPDLKNRI 256 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 Y+ PI IE +++SL Q +V L S GY++I+QTEALVSID+N+G+ T + ++ Sbjct: 257 ALYQRNIPILAAYNIEKEIESLLQRKVWLKSGGYLVIDQTEALVSIDINTGKFTGKKNLQ 316 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 DT ++TN EA EIARQ++LRD+ G+I++DFIDM + +SV L L+KDR + + Sbjct: 317 DTIVKTNKEAVAEIARQIKLRDIGGIIIIDFIDMNNHSDQQSVTDLLANELEKDRTKTSI 376 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 + GLLEM+R+++R K C C G G + S+S+VA+ ++R ++E + + Sbjct: 377 LGFTQLGLLEMTRKKVREGFGTLMQKDCPVCGGTGKVLSESTVAMKVIRKIDEIISRKKY 436 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576 + + H +V L+ + E E +F V I + EL + IEKGS Sbjct: 437 PAVSLEVHPEVAAVLIGAGGEKLQELEEKFEVDIFISGNAELKYEDIIIEKGSKEDLQPE 496 Query: 577 TGHKVGSDSQAPSYDKNIECVW 598 D + Sbjct: 497 ILDLDAGDRITVKIEDQHASNE 518 >gi|302551388|ref|ZP_07303730.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736] gi|302469006|gb|EFL32099.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736] Length = 782 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 131/420 (31%), Positives = 222/420 (52%), Gaps = 6/420 (1%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + S V + + S+ +A D+ V G + Sbjct: 152 EDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 211 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 212 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 270 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W+ +++ A + Sbjct: 271 LPDTERSR--LKSILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIQKKAKSG 328 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S+++VSG++ + ++ + P A + ++ Sbjct: 329 NAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAERLSKWTSE 388 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T + +E+T + Sbjct: 389 VDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTR 448 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 449 NNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 508 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++M+R+R+ +LES ++ C +C G G I S + + A + Sbjct: 509 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSSGGGGKRKKRARAGAAELPH 568 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ H + T++ VL DN + E E GN+YL KV V PS++AAF+D G Sbjct: 134 ERVMVVRQHGDRTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIG 193 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 194 KGRNAVLYAGEV 205 >gi|89257202|ref|YP_514564.1| ribonuclease G [Francisella tularensis subsp. holarctica LVS] gi|115315536|ref|YP_764259.1| ribonuclease G [Francisella tularensis subsp. holarctica OSU18] gi|167011106|ref|ZP_02276037.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC200] gi|169656789|ref|YP_001429513.2| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953776|ref|ZP_06558397.1| ribonuclease G [Francisella tularensis subsp. holarctica URFT1] gi|295312854|ref|ZP_06803585.1| ribonuclease G [Francisella tularensis subsp. holarctica URFT1] gi|89145033|emb|CAJ80407.1| Ribonuclease G [Francisella tularensis subsp. holarctica LVS] gi|115130435|gb|ABI83622.1| ribonuclease G [Francisella tularensis subsp. holarctica OSU18] gi|164551857|gb|ABU62557.2| ribonuclease, Rne/Rng family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 498 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 122/422 (28%), Positives = 223/422 (52%), Gaps = 2/422 (0%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V +E S E+ K I + ++ Q +LVQ+VKE GNKG +T++LS++ Sbjct: 74 EVIPLEKEDDDSDENFKLKKLNTKDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P+ + ++ L+ I + + G ILRTA + E++ D Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 ++L LW ++ +++ + P +VYE+ +LI + I ++ +I+V Y+E F Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 +P + Y H IF IE +++ V L S GY++I QTEA+++ID+ Sbjct: 254 ADKYIPGLREKIELY-QKHNIFEEYDIENEINKALDKMVYLKSGGYLVIEQTEAMITIDI 312 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G +E+T +TNLEA +EIARQLRLR+L G+I++DFIDM ++ + V + LK Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALK 372 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + L+ D+A+ V IS GL+EM+R+R+ S+L + + C +C G G +++ ++ I Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIF 432 Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R ++ Y + ++ ++ + ++ Y+ ++ + E E +I++ + + Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHLKVENSHIYNQY 492 Query: 564 YI 565 I Sbjct: 493 DI 494 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 41/63 (65%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E R+ + +N ++E+ E +++K+I GNIY K+ RV P +QAAFVD G + GFL E Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74 Query: 74 IHP 76 + P Sbjct: 75 VIP 77 >gi|330469631|ref|YP_004407374.1| ribonuclease [Verrucosispora maris AB-18-032] gi|328812602|gb|AEB46774.1| ribonuclease [Verrucosispora maris AB-18-032] Length = 1028 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 130/478 (27%), Positives = 231/478 (48%), Gaps = 9/478 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ +K+ +LVQ+ K+ G+KGA +T++++L+GR+ V +P Sbjct: 559 GEVNWDTSGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPG- 617 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ L+++ + L G GVI+RTA ++ E+ RD + L W+ Sbjct: 618 GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 675 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A AP L+YEE +L+ R +RDL+ +D E+++ G++ Y + ++ + P Sbjct: 676 DIQAKAAEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDQSYDMVESYLSHVSPDLL 735 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +R++ +F I+ Q+ +V LPS G+++I++TEA+ +DVN+G+ T Sbjct: 736 ARLRRHVGTTDVFAEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 795 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V ++L E L +DR Sbjct: 796 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 855 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + QV I++ GL++M+R+RI + +LE+ ++ C CKG G + V Sbjct: 856 KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGLVIHTEPVP-----EKPRSGG 910 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + + +R R V + V AD ++ G + Sbjct: 911 AEKVKAVASAAAPTTEQPTASSRRRARKSAAERTVVEVAEVDDTSSADADYHDTMGYDLS 970 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + + D L + + + R Sbjct: 971 RYEAETPATPDIADSQQGESARLAAPDDPDALAEDDEDDSGSGRRRSRRAGARRRTRP 1028 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 502 TQIAVLEDGVLVEHYVTRSSTGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 561 Query: 75 HPD 77 + D Sbjct: 562 NWD 564 >gi|296270425|ref|YP_003653057.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833] gi|296093212|gb|ADG89164.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833] Length = 990 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 127/415 (30%), Positives = 224/415 (53%), Gaps = 6/415 (1%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + ++ A AV +D + + + + V + + S+ +A D+ Sbjct: 507 ERIMIIRRNAGRTQVAVLEDGVLVEHYVDRESNRSYVGNVYLGKVQNVLPSMEAAFVDIG 566 Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V G D + I+ +K+ Q +LVQ+ K+ G+KGA +T+ ++L G Sbjct: 567 KGRNAVLYAGEVNFDSAGLEGQPKRIEAALKSGQSVLVQVTKDPIGHKGARLTSQITLPG 626 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RY V +P+ S ISRK+ + + + +P GVI+RTA T+ E+ RD Sbjct: 627 RYLVYVPDGSMTG-ISRKLPDKERAR--LKQILRKVMPENAGVIVRTAAEGATEEELSRD 683 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 L W++++ A + P L+ E +L+ R +RD++ +D S +IV G++ + +++ Sbjct: 684 VARLAAQWESIQRKAKTASPPELLLGEPDLMIRVVRDIFNEDFSTLIVQGDEAWNTVEEY 743 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 ++ + P ++++++ +F I+ Q+ + +V LPS G ++I+QTEA+ IDV Sbjct: 744 VRYVAPHLLDRLKKWDEETDVFTAYRIDEQIAKALERKVWLPSGGSLVIDQTEAMTVIDV 803 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T + +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L Sbjct: 804 NTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRL 863 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 E L +DR + QV +++ GL++M+R+R+ +LE+ + C C G G I S Sbjct: 864 LECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSTPCECCNGRGIIISSEP 918 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 41/75 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +++I + T+V VL D + E + E + GN+YL KV V PS++AAFVD G Sbjct: 507 ERIMIIRRNAGRTQVAVLEDGVLVEHYVDRESNRSYVGNVYLGKVQNVLPSMEAAFVDIG 566 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 567 KGRNAVLYAGEVNFD 581 >gi|145640375|ref|ZP_01795959.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae R3021] gi|145274961|gb|EDK14823.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 22.4-21] Length = 705 Score = 226 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 129/430 (30%), Positives = 202/430 (46%), Gaps = 27/430 (6%) Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371 + +K + +AK+ +KL+ P + V+ Y+ P+F IE Q++S Q EV LPS G + Sbjct: 1 MIAQKIFEKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSI 60 Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431 +I+ TEAL +ID+NS RSTR IE+TAL TNLEAA+EIARQLRLRDL GL+V+DFIDM Sbjct: 61 VIDVTEALTAIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMT 120 Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 ++ R VE +++++++ DRAR+Q+ IS FGLLEMSRQR+ S+ ES+ +C C+G G Sbjct: 121 PIRHQREVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTG 180 Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 +R S++LSILR +EE L+ + + YLLN+KR I E R V I Sbjct: 181 KVRDNESLSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDII 240 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGS---DSQAPSYDKNIECVWQDEALLPIPK 608 V + F + + + + + + + + + + A++ P Sbjct: 241 VAPNEAMETPHFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPA 300 Query: 609 SESL-------EDIQDNIVSEEST-----------------GVIRKRRRRRRRRRPATDH 644 ES E + + + + + R R + Sbjct: 301 VESAVVALSISEAAPTPVERKSNESSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRN 360 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 S ++ + E E STP E+ Sbjct: 361 QRRSQDRRSSRRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEA 420 Query: 705 SNSSSDPIVK 714 ++P+ + Sbjct: 421 KEERTEPVTQ 430 >gi|302391355|ref|YP_003827175.1| RNAse G [Acetohalobium arabaticum DSM 5501] gi|302203432|gb|ADL12110.1| RNAse G [Acetohalobium arabaticum DSM 5501] Length = 561 Score = 226 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 139/510 (27%), Positives = 251/510 (49%), Gaps = 6/510 (1%) Query: 102 AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVP 161 A+ +D ++ ++ + V I + +A +V S Sbjct: 17 AIVEDNELSEIYFERENEQQVVGNIYKGIVADVLPGMQAAFVNVGLEKNVFLHVSDALAL 76 Query: 162 KKFKRQYC---IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 +++ IQEV++ Q ++VQI KE G+KGA VT L+L GRY VLM Sbjct: 77 VSEEKRKNKLSIQEVVQPGQKIMVQITKEPLGSKGARVTCDLNLPGRYLVLMITMDHIGI 136 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 R + + + P G+I+RTA A+++ ++KRDF +L++LW+ + Sbjct: 137 SRRITDDQERNR--LKGITQEIKPEDKGLIVRTAAANKSGADLKRDFNFLIKLWEKIIHH 194 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 N AP L++ + NL+ R +RD + K++ ++++ K + E + + + P+ V+ Sbjct: 195 YHNRQAPDLLHSDLNLVSRIVRDKFTKEVDRMLINDRKEFEETMELLDFISPNLKSKVQL 254 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y PIF +E +D + +V L GY+I + TEAL ++DVN+G+ + DT Sbjct: 255 YNRSKPIFEYYDLETAIDKTLKRKVWLDCGGYIIFDVTEALTAVDVNTGKYVGSTDLADT 314 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 L+TN EAA+EIA+QL+LRD+ G+I++DFIDM+ K++ + V + L E+L+KD+ + + Sbjct: 315 VLKTNKEAAKEIAKQLKLRDIGGIIIIDFIDMDNKQDQQEVLETLDEALQKDKTKTTILG 374 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY-LLQYTAH 517 ++ GL+EM+R++ + V E K C YC+G+G + S+ +VAL +R + + Sbjct: 375 LTELGLVEMTRKKEKEGVEEFLQKSCPYCEGSGRVLSEDTVALRAIRKLRNLFANRDDEE 434 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 +++ H V L+ ++ E EA I V +L + I + + + Sbjct: 435 AVLLEVHPQVAARLIGLGGNSLKELEAELDRHIYVKGSKKLHIEEIDIVETGSKETIAEL 494 Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 V + + + + + I Sbjct: 495 ASPVEVGERKVLEIEETHVTNKQDGISRIE 524 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L+D + TRV ++ DN + E+ FE E+++Q+ GNIY V V P +QAAFV+ Sbjct: 1 MVKEILVDVDFKD-TRVAIVEDNELSEIYFERENEQQVVGNIYKGIVADVLPGMQAAFVN 59 Query: 61 YGGNRHGFLPFLE 73 G ++ FL + Sbjct: 60 VGLEKNVFLHVSD 72 >gi|295097734|emb|CBK86824.1| RNAse G [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 357 Score = 226 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 103/356 (28%), Positives = 166/356 (46%), Gaps = 2/356 (0%) Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MP S R + + K G I+RTA ++ ++ D YL Sbjct: 1 MPGASHVGVSQRIESESERERLKK--VVSAYCDEQGGFIIRTAAEGISEEDLASDAAYLK 58 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 R+W V E + + +Y E L +R +RD + I V Y +F + Sbjct: 59 RVWTKVMERKKRNQTRYRLYGELALAQRVLRDFADAQLDRIRVDSRLTYEALLEFTAEYI 118 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P ++ Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 119 PEMPGLLEHYTGRQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAF 178 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L K Sbjct: 179 VGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 238 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DR + + S GL+EM+R+R R SV C C G G +++ +V I+R + Sbjct: 239 DRVKTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVR 298 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y + +V+ V L ++ + E E G + V I + F + Sbjct: 299 VHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVKVQIEPLYNQEQFDV 354 >gi|297194393|ref|ZP_06911791.1| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486] gi|297152254|gb|EDY62707.2| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486] Length = 603 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 127/396 (32%), Positives = 219/396 (55%), Gaps = 6/396 (1%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 124 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 183 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 184 MSGGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 242 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA ++ E++RD E L W+++++ A + Sbjct: 243 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSG 300 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E ++ R +RD++ +D S+++VSG++ + ++ + P A ++++ Sbjct: 301 NAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWDTIHGYVSHVAPDLADRLQRWTSE 360 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 361 TDVFAVHRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 420 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L +DR + QV +++ Sbjct: 421 NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTS 480 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 481 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 516 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 106 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 165 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 166 KGRNAVLYAGEV 177 >gi|167627065|ref|YP_001677565.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597066|gb|ABZ87064.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 509 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 122/422 (28%), Positives = 217/422 (51%), Gaps = 2/422 (0%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V +E S E+ I + ++ Q +LVQ+VKE GNKG +T++LS++ Sbjct: 85 EVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 144 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P+ + ++ L I + + G ILRTA + E++ D Sbjct: 145 RFLVFLPDLDHIGISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAAEGASYEELEND 204 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 ++L LW ++ +++ + P +VYE+ +LI + I + +I V Y+E F Sbjct: 205 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVDDIDSYKEICQF 264 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 +P + Y H IF I+V+++ V L S GY++I QTEA+++ID+ Sbjct: 265 ADKYIPGLRDKIELY-QKHNIFEEYDIDVEINKALDKTVYLKSGGYLVIEQTEAMITIDI 323 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G +E+T +TNLEA +EIARQLRLR+L G+I++DFIDM ++ + V + LK Sbjct: 324 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDESHKNQVLEALK 383 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + L+ D+A+ V IS GL+EM+R+R+ S+L + + C +C G G +++ ++ I Sbjct: 384 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVKTLQTICYDIF 443 Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R ++ Y +N ++ + ++ Y+ ++ + E E +I + + Sbjct: 444 REIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDKNIYLKAESNHIYNQY 503 Query: 564 YI 565 I Sbjct: 504 DI 505 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 41/63 (65%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E R+ + +N ++E+ E +++K+I GNIY K+ RV P +QAAFVD G + GFL E Sbjct: 26 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 85 Query: 74 IHP 76 + P Sbjct: 86 VIP 88 >gi|313891808|ref|ZP_07825413.1| putative ribonuclease G [Dialister microaerophilus UPII 345-E] gi|313119802|gb|EFR42989.1| putative ribonuclease G [Dialister microaerophilus UPII 345-E] Length = 473 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 124/462 (26%), Positives = 208/462 (45%), Gaps = 9/462 (1%) Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 + + D L ++ N S+E E + +VV+++ V + Sbjct: 13 SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLDIGGGKNAYLRY 72 Query: 167 QYCIQEV--IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I + LLVQI KE KG VT +S G+Y+VL+ T+ K Sbjct: 73 DDIINRDTLPTEGETLLVQIKKESTYTKGPLVTEKISFKGKYAVLIKGTNYIGVS--KKI 130 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + D + +P G G I+RT + ++ + L+ D V++ Sbjct: 131 HDEDLREKFRNITKTILPEGYGAIIRTESIETSVESFLKELKKLIYESDVVQKRFKREKN 190 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 L+Y +L R IRD KD+ ++++ + Y + P Y++ + Y + P Sbjct: 191 TGLLYRNSDLSMRCIRDYLDKDVKKLLIDDKSTYNRMNKLISEYFPEYSKTITFYNEKKP 250 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F IE ++ L++ ++ L S G +I + EAL IDVNSG + ED A N Sbjct: 251 LFEVFNIEDEIQKLYKRKIELKSGGSIIFDYAEALTVIDVNSGSFNKNMSHEDVAFFVNK 310 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA EIARQLRLR + G+I++DFIDM++ K + LK+ LKKD + + +++ GL Sbjct: 311 EAACEIARQLRLRGIGGIIMIDFIDMKDLKRREQLIGYLKKELKKDFVKTVICGMTSLGL 370 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHT 523 +EM+R+R S+L C+ C G G + + ++ I + +E + ++ + Sbjct: 371 VEMTRERTVHSLLYKYYDDCSVCGGVGKVFTLKRISNKIHKDLEFMRKTGNSSFDLTIEC 430 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V YL R I +E FG I + L ++ I Sbjct: 431 QVEVANYL----RKYIDLWEKEFGKKIFIKENKSLHRDVYSI 468 Score = 73.1 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L+ S EE+ + V+ D + +L E +++ G IY+ V V S+ F+D Sbjct: 3 MNKYLLLSVS-SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLD 61 Query: 61 YGGNRHGFLPFLEI 74 GG ++ +L + +I Sbjct: 62 IGGGKNAYLRYDDI 75 >gi|297199646|ref|ZP_06917043.1| predicted protein [Streptomyces sviceus ATCC 29083] gi|297147454|gb|EDY57460.2| predicted protein [Streptomyces sviceus ATCC 29083] Length = 1115 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 123/346 (35%), Positives = 205/346 (59%), Gaps = 4/346 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 383 GEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 442 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L W+ Sbjct: 443 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWE 499 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++++ A + AP L+Y E ++ R +RD++ +D S+++VSG++G+ ++ + P A Sbjct: 500 DIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEGWETIHGYVSHVAPDLA 559 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 ++++ +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T + Sbjct: 560 DRLQRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQG 619 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR Sbjct: 620 GNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRT 679 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 + QV +++ GL++M+R+R+ +LES ++ C +C G G I + Sbjct: 680 KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 725 Score = 92.3 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D + E E GN+YL KV V PS++AAF+D G Sbjct: 314 ERVMVVRQSGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 373 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 374 KGRNAVLYAGEV 385 >gi|329121085|ref|ZP_08249716.1| ribonuclease G [Dialister micraerophilus DSM 19965] gi|327471247|gb|EGF16701.1| ribonuclease G [Dialister micraerophilus DSM 19965] Length = 471 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 124/462 (26%), Positives = 208/462 (45%), Gaps = 9/462 (1%) Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 + + D L ++ N S+E E + +VV+++ V + Sbjct: 11 SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLDIGGGKNAYLRY 70 Query: 167 QYCIQEV--IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I + LLVQI KE KG VT +S G+Y+VL+ T+ K Sbjct: 71 DDIINRGTLPTEGETLLVQIKKESTYTKGPLVTEKISFKGKYAVLIKGTNYIGVS--KKI 128 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + D + +P G G I+RT + ++ + L+ D V++ Sbjct: 129 HDEDLREKFRNITKTILPEGYGAIIRTESIETSVESFLKELKKLIYESDVVQKRFKREKN 188 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 L+Y +L R IRD KD+ ++++ + Y + P Y++ + Y + P Sbjct: 189 TGLLYRNSDLSMRCIRDYLDKDVKKLLIDDKSTYNRMNKLISEYFPEYSKTITFYNEKKP 248 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 +F IE ++ L++ ++ L S G +I + EAL IDVNSG + ED A N Sbjct: 249 LFEVFNIEDEIQKLYKRKIELKSGGSIIFDYAEALTVIDVNSGSFNKNMSHEDVAFFVNK 308 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA EIARQLRLR + G+I++DFIDM++ K + LK+ LKKD + + +++ GL Sbjct: 309 EAACEIARQLRLRGIGGIIMIDFIDMKDLKRREQLIGYLKKELKKDFVKTVICGMTSLGL 368 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NIIVHT 523 +EM+R+R S+L C+ C G G + + ++ I + +E + ++ + Sbjct: 369 VEMTRERTVHSLLYKYYDDCSVCGGVGKVFTLKRISNKIHKDLEFMRKTGNSSFDLTIEC 428 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V YL R I +E FG I + L ++ I Sbjct: 429 QVEVANYL----RKYIDLWEKEFGKKIFIKENKSLHRDVYSI 466 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L+ S EE+ + V+ D + +L E +++ G IY+ V V S+ F+D Sbjct: 1 MNKYLLLSVS-SEESMLAVVEDEILNDLIIEDNSSEEVAGEIYVGIVKNVVNSINGVFLD 59 Query: 61 YGGNRHGFLPFLEI 74 GG ++ +L + +I Sbjct: 60 IGGGKNAYLRYDDI 73 >gi|297571631|ref|YP_003697405.1| ribonuclease, Rne/Rng family [Arcanobacterium haemolyticum DSM 20595] gi|296931978|gb|ADH92786.1| ribonuclease, Rne/Rng family [Arcanobacterium haemolyticum DSM 20595] Length = 839 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 136/531 (25%), Positives = 232/531 (43%), Gaps = 23/531 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ +K+ +LVQ+ K+ G+KGA +T ++LAGR+ VL+P Sbjct: 322 GEVNWDATGLEGKPRKIEQALKSGDPVLVQVTKDPIGHKGARLTAQITLAGRHLVLVPGG 381 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + + P + + VPA GVI+RTA T+ ++K+D E LM+ W Sbjct: 382 AMTGISRKL---PERERTRLKKILKEVVPAEHGVIVRTAAEGATEEQLKQDVERLMKSWA 438 Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + +S P L+ E L R +RD++ +D + +SG+ + ++ L P Sbjct: 439 DIEAKSKSSKNAPSLLKGEPELAVRVVRDIFNEDFRTLRISGDNAWETISHYVSDLSPEL 498 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + +++ IF + ++ QL +V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 499 IDRLEKWDSNADIFQENRVDEQLQKAFDRKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGS 558 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +DR Sbjct: 559 GGSLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRDLVLRRLIECLGRDR 618 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 R QV +++ GL++M+R+R+ ++E+ + C C+G GYI + EE Sbjct: 619 TRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTTCECCEGRGYISHD-----HPVERDEEKP 673 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + T+ + + K + A + Sbjct: 674 ARQTSKKEAKKKDAAKNTAESDSKHEEVKAALASIAAAATTKHEEM------------AA 721 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + +K E D P+ + D D SE + K+ Sbjct: 722 EGGAPDADSADVPAAEKAVEKASEDAQADRPKRGRPRKKKTSDRSDTHESESAERDTPKK 781 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 R R+R + + + IT + Sbjct: 782 RGRKRATSADA-AQPDSAEKPREKSETPVKKTKKRVTSSGTITPTQRASSA 831 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ V+ D + E + + GN+YL +V V PS++AAFVD G R+ L E++ Sbjct: 266 QIAVIEDGVLVEHYVARHTQASMVGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVN 325 Query: 76 PD 77 D Sbjct: 326 WD 327 >gi|256375324|ref|YP_003098984.1| ribonuclease, Rne/Rng family [Actinosynnema mirum DSM 43827] gi|255919627|gb|ACU35138.1| ribonuclease, Rne/Rng family [Actinosynnema mirum DSM 43827] Length = 974 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 119/352 (33%), Positives = 197/352 (55%), Gaps = 6/352 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + + +LVQ+ K+ G+KGA +TT +SL GR+ V +P Sbjct: 381 GEVDWDAAGLEGKARKIEQALSSGDSVLVQVTKDPIGHKGARLTTQISLPGRFLVYVPGG 440 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ + VP GVI+RTA + E+ RD L W Sbjct: 441 G-ATGISRKLPDNERKR--LKDILKRVVPDDAGVIIRTASEGVAEEELARDVTRLQAQWQ 497 Query: 274 NVREL--ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 +++ + AP L+YEE +L+ + +RDL+ +D S ++V G + + +++ + P Sbjct: 498 IIKDKAATPKAQAPQLLYEEPDLLVKVVRDLFTEDFSGLVVQGSEAWDTIDGYVRHVAPD 557 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 + ++ F I+ QL +V LPS GY++I++TEA+ IDVN+G+ T Sbjct: 558 LQERLHRHVGNSDAFGEYRIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTG 617 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +D Sbjct: 618 SGGNLEETVTRNNLEAAEEIVRQLRLRDVGGIIVIDFIDMVLESNRDLVLRRLTECLGRD 677 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 R R QV +++ GL++M+R+R+ + +LE+ + C +C+G G + + A S Sbjct: 678 RTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSSTCEHCRGRGLVVTTDPTAHS 729 Score = 99.3 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E S + GN+YL +V V PS++AAF+D G R+ L E+ Sbjct: 324 TQIGVLEDGVLVEHFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEV 383 Query: 75 HPD 77 D Sbjct: 384 DWD 386 >gi|241667604|ref|ZP_04755182.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876149|ref|ZP_05248859.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842170|gb|EET20584.1| ribonuclease G [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 498 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 122/422 (28%), Positives = 217/422 (51%), Gaps = 2/422 (0%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V +E S E+ I + ++ Q +LVQ+VKE GNKG +T++LS++ Sbjct: 74 EVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P+ + ++ L I + + G ILRTA + E++ D Sbjct: 134 RFLVFLPDLDHIGISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAAEGASYEELEND 193 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 ++L LW ++ +++ + P +VYE+ +LI + I + +I V Y+E F Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVDDIDSYKEICQF 253 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 +P + Y H IF I+V+++ V L S GY++I QTEA+++ID+ Sbjct: 254 ADKYIPGLRDKIELY-QKHNIFEEYDIDVEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G +E+T +TNLEA +EIARQLRLR+L G+I++DFIDM ++ + V + LK Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDESHKNQVLEALK 372 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + L+ D+A+ V IS GL+EM+R+R+ S+L + + C +C G G +++ ++ I Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVKTLQTICYDIF 432 Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R ++ Y +N ++ + ++ Y+ ++ + E E +I + + Sbjct: 433 REIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDKNIYLKAESNHIYNQY 492 Query: 564 YI 565 I Sbjct: 493 DI 494 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 41/63 (65%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E R+ + +N ++E+ E +++K+I GNIY K+ RV P +QAAFVD G + GFL E Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74 Query: 74 IHP 76 + P Sbjct: 75 VIP 77 >gi|305681139|ref|ZP_07403946.1| S1 RNA binding domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659344|gb|EFM48844.1| S1 RNA binding domain protein [Corynebacterium matruchotii ATCC 14266] Length = 929 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 135/562 (24%), Positives = 239/562 (42%), Gaps = 26/562 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ +LVQ+ K+ G KG +TT +SLAGRY V +P Sbjct: 363 GEVDWRAANLGGRHRKIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPG- 421 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 K ISRK+ P ++ + VPA VI+RTA + I D L LW+ Sbjct: 422 GKSAGISRKLPAPERKR--LKAILKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLWE 479 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++E L +YEE N++ + +RDL+ +D + ++V G + + +++ + Sbjct: 480 QIQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSV 539 Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P + +++ F ++ QL +V LPS G ++I++TEA+ IDV Sbjct: 540 APDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDV 599 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 600 NTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 659 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L +DR R Q+ +++ GL++++R+R+ + +LE+ C C G G + V Sbjct: 660 TEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVLIHDDPVEHHT 719 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + E ++ + H V+ + + Sbjct: 720 ISDRPERRGKHGVPHQDPTRHPAVLAMEHQDESDEPEPTDD-------FAEEPLFRPSET 772 Query: 564 YIEKGSP------VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 IE + + + ++ + S +N + + +P KS+ + Sbjct: 773 SIEGLAAAVVAPSAEDYLPATYEEAVSAYEASPRRNRKVRGNSLSDVPPQKSDFEPPTPE 832 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 E R+RRR ++ ++ A V + + + + Sbjct: 833 PEPEPEPESGSRRRRRAVHKKVTESEAAPAVDVDKLEETTHRTRKRRRVVRKTGSTATRR 892 Query: 678 LLENGAHGFTENYDVSIPPVST 699 + + S + Sbjct: 893 GATTQSRRSAASGKTSTDSATN 914 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E S+ + + GNIYL +V V P+++AAF+D G R+G L E+ Sbjct: 306 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 365 >gi|88801873|ref|ZP_01117401.1| Ribonuclease G [Polaribacter irgensii 23-P] gi|88782531|gb|EAR13708.1| Ribonuclease G [Polaribacter irgensii 23-P] Length = 509 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 119/563 (21%), Positives = 222/563 (39%), Gaps = 62/563 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 LI S+ + +LRD ++ EL+ E+ K G+I+LAK+ +V L AAFV+ G Sbjct: 2 KTELIIRSNSSDIDFALLRDGKLIELNNETTGNKFSVGDIFLAKIGKVLTGLNAAFVNVG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 + GFL + ++ A V+ G + Sbjct: 62 YPKDGFLHYHDLG-------------------AQVNSLNAFIKKVSTGKYKEFTLKNFRF 102 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 I + + G ++ + NR + Sbjct: 103 EEDINKNGSINDTLKTGQNLLVQIVKEPISTKGPRLSSELSIAGRFLVLVPFSNRVSVSQ 162 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 +I + + + + G +L ++G+ ++ + + + + Sbjct: 163 KIEDPKEKERLKRLAKSIKPKGFGVILRT-VAQGKKVAELDKDLQNSLDRWK-------- 213 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDL 302 + ++ + T +I + + +V + S+ Sbjct: 214 ----TMCKSIANTNTPTKILSELNRASSILRDVMNESFTSI------------------- 250 Query: 303 YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTE 362 + + E E K++++ + P IV+ + PIF + GIE Q+ + Sbjct: 251 --------VTNDETLKVEIKEYLQEIYPEKEEIVKLHTSEVPIFEKYGIERQIKTSFGKT 302 Query: 363 VTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 V++ Y++I TEAL IDVNSG RS + EDTAL+ NL +A E+ARQL+LRD+ G Sbjct: 303 VSMSKGAYLVIEHTEALHVIDVNSGNRSNKAGSQEDTALEVNLISATEVARQLQLRDMGG 362 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 +IVVDFIDM + +N + + LKE + DR + ++ S FGL++++RQR+R + TT Sbjct: 363 IIVVDFIDMHKVENRNKLFQHLKEQMAFDRTKHKILPPSKFGLVQITRQRVRPELSIKTT 422 Query: 482 KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE 541 + G + + + I +E+++ I +H H + YLL + + Sbjct: 423 EANPNKNGE--VEAPIVLLDKIEADLEKFISNPKNKKIQLHLHPFIAAYLLKGVNSIRFK 480 Query: 542 YEARFGVSINVVIGIELADKLFY 564 + + I ++ + Sbjct: 481 WYLKHKKWITIIPRDAYTYLHYR 503 >gi|291515894|emb|CBK65104.1| ribonuclease, Rne/Rng family [Alistipes shahii WAL 8301] Length = 501 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 116/541 (21%), Positives = 209/541 (38%), Gaps = 59/541 (10%) Query: 21 RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80 D + EL+ E G+IYL KV ++ P L AAFV+ G + F+ +L++ P Q Sbjct: 3 EDKVLVELNKEQCQTGFAVGDIYLGKVRKIMPGLNAAFVNIGHEKDAFIHYLDLGP---Q 59 Query: 81 IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 P Q L+ + + + P + + E + Sbjct: 60 FPS--LQKLVASQQPGKRGFRVESMKLE----------------PPVEKTGKIGEYLQVG 101 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 V E + P + V ++ L Q ++ K Sbjct: 102 QQIMVQVAKEAISTKGPRLTADISLAGRNVVLVPFTSKVFLSQKIRSADEKKRLKRIAAA 161 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 L + V++ R ++++ + A+ + Sbjct: 162 VLPKNFGVII----------RTAAMEAKDEDIEHDIQTQIDRWRKTCAAIKKNAASAPAQ 211 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 + + + + + + +A E + + +GY Sbjct: 212 LMSEMNRANTIIRDSLNGSFSQIAV---------------------DDEAMYNEIRGYIR 250 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 + K +IV+ Y+ PIF I Q+ SL V+L Y+II +TEA+ Sbjct: 251 QIEPEKE------KIVKLYKGNVPIFDNFDISKQIKSLFAKYVSLKRGAYLIIERTEAMN 304 Query: 381 SIDVNSGRSTR-EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVNSG T+ E E TA+ NL AA+EIARQLRLRDL G++++DFID+ + +N +++ Sbjct: 305 VIDVNSGNRTKAEDNQEQTAMDVNLAAAKEIARQLRLRDLGGIVIIDFIDLHKAQNKQAL 364 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 ++ + + D+A+ V ++ FGL++++RQR+R +ES + VC C G+G I + Sbjct: 365 FDEMVKLMATDKAKHTVLPLTKFGLMQITRQRVRPVAVESVSDVCPTCNGSGKIEPTVLL 424 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 I + I + V +L + +E ++ V + + + Sbjct: 425 DKKIENQISFLTQDRGHKFIKLVVSPYVAAFLRKGLWSLRRRWEWKYKVRLEIAEDQSIG 484 Query: 560 D 560 Sbjct: 485 I 485 >gi|269794462|ref|YP_003313917.1| ribonuclease, Rne/Rng family [Sanguibacter keddieii DSM 10542] gi|269096647|gb|ACZ21083.1| ribonuclease, Rne/Rng family [Sanguibacter keddieii DSM 10542] Length = 1265 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 132/489 (26%), Positives = 236/489 (48%), Gaps = 9/489 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ +K+ +LVQ+ K+ G KGA +T+ ++LAGRY V +P Sbjct: 755 GEVNWDAAGMEGQPRRIEQALKSGDSVLVQVTKDPIGQKGARLTSQVTLAGRYLVYVPGG 814 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + + K VP GVI+RTA ++ E++ D L W+ Sbjct: 815 GMTG-ISRKLPDTERARLKK--ILREVVPETAGVIVRTAAEGASEEELRADIARLQGQWE 871 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + + + + AP L+ E +L R +RD++ D + + VSG+ + E +++ L P A Sbjct: 872 AIEKKSKTASAPALLQGEPDLAIRVVRDIFNDDFTSLTVSGDGAWSEISEYVNALAPDLA 931 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 V+++ +F + I+ QL +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 932 ERVKRWTSDKDVFAEARIDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSG 991 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V +++ E L +DR Sbjct: 992 GTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLGRDRT 1051 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + QV +++ GL++M+R+R+ ++E+ ++ C +C G G+I + Sbjct: 1052 KHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCDHCNGRGFIVHDEPNEKHFQGGSQPSGA 1111 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 Q A + +D ++++ + V + + L I + Sbjct: 1112 QVAAQS---SAPADGGDSKRSRRKRGGAKETESTTVPVLPEAREAVKATLATIAAAAAHA 1168 Query: 573 ALVNTG--HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + H GS Q + V ++ + + ++E +D+ + E+ Sbjct: 1169 HEHDDEHGHAAGSAEQGELAVVEVTVVETEQVVDEVEQAEPADDVTVGEQATETETGAED 1228 Query: 631 RRRRRRRRR 639 + +R Sbjct: 1229 SDEQEPKRP 1237 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + + + GN+YL +V V PS++AAF+D G R+ L E+ Sbjct: 698 TQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEV 757 Query: 75 HPD 77 + D Sbjct: 758 NWD 760 >gi|257055293|ref|YP_003133125.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017] gi|256585165|gb|ACU96298.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017] Length = 1093 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 160/664 (24%), Positives = 285/664 (42%), Gaps = 38/664 (5%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHK---KQIKGNIYL-AKVTRVEPSLQAAFVDYGGN 64 A T VV +RD + E + E++ + + ++G+ L AK R +A G Sbjct: 425 ADDPPNT-VVHVRDGKPAE-EKETKAEDGVRSVRGSTRLEAKRQRRRDGREA-----GRR 477 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 R L E + + + + + V +D + + + S V Sbjct: 478 RAPILSEAE-----FLARRESVERTMVVAERGDSTQIGVLEDGVLVEHFVTSSDSGSIVG 532 Query: 125 PIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLV 182 + + S+ +A D+ V G D + I++ + +LV Sbjct: 533 NVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALTTGDHVLV 592 Query: 183 QIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVP 242 Q+ K+ G+KGA +TT +SL GR+ V +P+ ISRK+ R+ + VP Sbjct: 593 QVTKDPVGHKGARLTTQISLPGRFLVYVPSGG-ATGISRKLPENERRR--LKDILKRIVP 649 Query: 243 AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGNLIKR 297 + GVI+RTA ++ E+ RD L W+ ++E A S AP L+Y+E +L+ + Sbjct: 650 SDAGVIIRTASEGISEEELARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVK 709 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 IRDL+ +D +++V G+ + +++++ + P V +Y +F I+ QL Sbjct: 710 VIRDLFTEDFKKLVVQGDTAWETIRNYVEHVAPDLLDRVERYVGTGDVFADYRIDEQLMK 769 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRL 416 +V LPS GY++I++TEA+ IDVN+G+ T +E+T + NLE+AEEI RQLRL Sbjct: 770 ALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRL 829 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RD+ G+IV+DFIDM + N V ++L E L +DR R QV +++ GL++M+R+R+ + + Sbjct: 830 RDIGGIIVIDFIDMVLESNRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTRKRVGTGL 889 Query: 477 LESTTKVCTYCKGAGYIRSQSSV----ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 LE+ + C +CKG G I S + + A + Sbjct: 890 LEAFSTTCEHCKGRGVIVSTDPHRGNGHGNGHHGSRRSRNKSKAGEQHGTKAVEQAAQGP 949 Query: 533 NQKRAT-----IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 ++ + V++ E + ++ S + Sbjct: 950 TPEQRESAVSAVQAMANASKVALTKTSESESDAE--RADRSGEDTRTTVEAQPDESAAVD 1007 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 + + ++EA + + + +R +R A + Sbjct: 1008 GQRNGAVPVRPEEEAASTLSSVAKTSTSAEESAEDRPESTADGQREQRPTTTAAAAVSEP 1067 Query: 648 GVVS 651 V + Sbjct: 1068 AVRT 1071 >gi|227824837|ref|ZP_03989669.1| ribonuclease [Acidaminococcus sp. D21] gi|226905336|gb|EEH91254.1| ribonuclease [Acidaminococcus sp. D21] Length = 468 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 127/398 (31%), Positives = 201/398 (50%), Gaps = 7/398 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 Q+ + Q+LLVQ+VK+ RG KG VT ++L GRY VL P ++ + Sbjct: 70 HKQDRLTEGQMLLVQVVKDCRGTKGPGVTRNVTLPGRYIVLEPFGNRISLSRKIT--CKS 127 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 + +P GMGV++RTA A EI+ D L+ W + + P L+ Sbjct: 128 LRTRLRTLVQKSLPEGMGVVIRTAAAKAAAEEIENDLRQLLASWQVLLRRSKVGRGPQLL 187 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 Y E +L R IRD KD+ +IIV E Y ++ ++ + + R Y++ +F Sbjct: 188 YRELDLSIRMIRDYVTKDVQKIIVDDEATYHTVEELLQDMGLTEIR-TEWYQEKEDLFTH 246 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 G+ ++ S+ V LP G ++ + TEA+ IDVNSG + E+T+L TN EAA Sbjct: 247 YGLNEEIASISDRVVPLPGGGSLVFDYTEAMTVIDVNSGHYSTGSDREETSLATNREAAL 306 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 EIARQLRLRD+ G+IV DFIDME K+ + L+ DR + +V ++ L+EM+ Sbjct: 307 EIARQLRLRDIGGIIVADFIDMERKEEQEEILDLLRREFAMDRMKPRVMGMTALNLVEMT 366 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE-YLLQYTAHNIIVHTHSDV 527 R + R ++ + C C+G+G + S +V + I R + YL A ++++ H V Sbjct: 367 RMKARRNLFGTVYTTCPMCQGSGRVESPETVYVEIRRRLRSLYLDHAMARSLVLSVHPLV 426 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ + + E FG I +V LA +F + Sbjct: 427 EEWIRIHG---MKDMEQEFGAKIRLVSNPSLAVGVFTL 461 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69 EETR+ ++ D+++ + E + + GNIY +V+ V P +QAAF+D ++GFL Sbjct: 10 PEETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDLNVGKNGFL 67 >gi|318081174|ref|ZP_07988506.1| ribonuclease E [Streptomyces sp. SA3_actF] Length = 826 Score = 224 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 200 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 258 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + VP GVI+RTA ++ E++RD E L W+++++ A Sbjct: 259 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 316 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+Y E ++ R +RD++ +D ++++VSG++ + ++ + P + ++ Sbjct: 317 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 376 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 377 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 436 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 437 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 496 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 497 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 531 Score = 92.7 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D+ + E GN+YL KV V PS++AAF+D G Sbjct: 122 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 181 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 182 KGRNAVLYAGEV 193 >gi|91217977|ref|ZP_01254929.1| Ribonuclease G [Psychroflexus torquis ATCC 700755] gi|91183835|gb|EAS70226.1| Ribonuclease G [Psychroflexus torquis ATCC 700755] Length = 513 Score = 224 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 240/564 (42%), Gaps = 64/564 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + LI S + +L+D R+ EL E+E G+I Sbjct: 1 MDKE-LIVRSSSDAVDFALLKDGRLIELHKETEGFDFSVGDI------------------ 41 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 FL + + + Sbjct: 42 -------FLA------------------------KIRKALPGLNAAFVNVGYEKDGFLHY 70 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ P + +++ + + + + I + + + Q + Sbjct: 71 HDLGPNVKTMLKFVKKATSNQMKNFSLRDYPFEQE--------IDKNGSIADTLHSNQSI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ+VKE KG +++ LSLAGRY VL+P + + ++S+KI + ++ LK + + ++ Sbjct: 123 LVQVVKEPISTKGPRLSSELSLAGRYIVLVPFSDR-VSVSQKIESKEEKSRLKRLVKSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G VI+RT + +I +D + LM+ W+N+ + P V E N +R Sbjct: 182 PK-GFSVIIRTVAEGKKVADIDKDLQNLMKRWENMCRKLSKAHQPSKVLGELNKASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I + + Y + KD++ + P IV Y+ PIF + GIE Q+ + Sbjct: 241 DIFNDSFTSICIDDDVIYTQIKDYVGKISPDKESIVSNYDSKVPIFEKYGIERQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 VT+ Y++I TEA+ IDVNSG RS + EDTAL+ N+ +A EIARQLRLRD+ Sbjct: 301 KTVTMKKGAYLVIEHTEAMHVIDVNSGNRSNKAKNQEDTALEVNMISATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM N R + + LK+ + DRA+ ++ S FGL++++RQR+R + Sbjct: 361 GGIIVVDFIDMNNPDNRRKLYEHLKDEMSDDRAKHKILPPSKFGLIQITRQRVRPEMNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + G I + + I + +L+ I + H + YL+ + Sbjct: 421 TREKDP--NADGEIEAPIVIVNKI-NIDLQKILKKGTKKITLTAHPFIAAYLMKGFPSPR 477 Query: 540 VEYEARFGVSINVVIGIELADKLF 563 ++ + + + Sbjct: 478 SKWFFDSKKWVKIQPRDAYNYLEY 501 >gi|284990123|ref|YP_003408677.1| ribonuclease, Rne/Rng family [Geodermatophilus obscurus DSM 43160] gi|284063368|gb|ADB74306.1| ribonuclease, Rne/Rng family [Geodermatophilus obscurus DSM 43160] Length = 1048 Score = 224 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 117/351 (33%), Positives = 195/351 (55%), Gaps = 5/351 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D +Q I++ +K+ +LVQ+ K+ G+KGA +T ++L GR+ V +P Sbjct: 454 GEVNWDAAGLSGKQRSIEQALKSGDKVLVQVTKDPIGHKGARLTQQVNLPGRFLVYVPGG 513 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP GVI+RTA ++ E+ RD L WD Sbjct: 514 SMTG-ISRKLPDTERQR--LKDVLKKIVPEDAGVIIRTAAEGASEEELTRDVNRLQAQWD 570 Query: 274 NVREL-ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ +S AP L+Y E +L R IRD++ +D E++V G+ + + ++ + P Sbjct: 571 VIQRKAESSSNAPSLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWDTVEAYVAHVSPEL 630 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + ++ +F I+ QL +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 631 VGRLTRHTGEGDVFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGS 690 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E T + N+EAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 691 GGNLEQTVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDR 750 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 + QV +++ GL++M+R+R+ +LE ++ C +C+G G + V Sbjct: 751 TKHQVAEVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGVVVHIDPVDEK 801 Score = 98.5 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM+I E T++ VL D+ + E GN+YL +V V PS++AAF+D G Sbjct: 386 RKMVI-RQRGERTQIAVLEDDVLVEHYVTQAQATSFAGNVYLGRVQNVLPSMEAAFIDIG 444 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 445 KGRNAVLYAGEVNWD 459 >gi|220932249|ref|YP_002509157.1| ribonuclease, Rne/Rng family [Halothermothrix orenii H 168] gi|219993559|gb|ACL70162.1| ribonuclease, Rne/Rng family [Halothermothrix orenii H 168] Length = 489 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 152/410 (37%), Positives = 234/410 (57%), Gaps = 2/410 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + + K + + IQ V++ Q L+VQ+VKE KGA VT +SL GRY VL+P Sbjct: 78 DEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTCKISLPGRYLVLLPGE-Y 136 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 ISRKI + +R LK+I L+ P MG+I+RT + ++ D+ YL R W + Sbjct: 137 RTAISRKIKDFDERDRLKKIVGKLKDP-DMGLIIRTNSRYKKADLLELDYSYLKRTWTQI 195 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 +E NS AP L+YE +L+K +RD KD+ ++++ E YR + + L P Sbjct: 196 KENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYRVLLELSEKLAPDLKNR 255 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 + Y PIF GIE +L+ + ++ L S G+++I QTEALV+IDVN+G+ T + Sbjct: 256 INLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEALVAIDVNTGKYTGKKNA 315 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 T L+TNLEAA EIARQLRLRD+ G+I++DFIDM+E+++ + V + ++ L KDR+ Sbjct: 316 ARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEVLETFEKELAKDRSVTS 375 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 + ++ GLLEM+RQ++R + E K C+YC+G G I S +SVA SI+R+++ Sbjct: 376 IQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSANSVAESIIRNIQLKKASEE 435 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 +V H VV L + + + GVS+ + L + + I Sbjct: 436 FSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLHIEKYRI 485 Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N+++I+ S ++E R +L DN +E++ E + K+I GN+Y A+V V P +QAAFVD Sbjct: 1 MVNQIIIN-SGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G +++ FL +I+P Sbjct: 60 IGYDKNAFLHVSDIYP 75 >gi|302534384|ref|ZP_07286726.1| predicted protein [Streptomyces sp. C] gi|302443279|gb|EFL15095.1| predicted protein [Streptomyces sp. C] Length = 1071 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 124/399 (31%), Positives = 219/399 (54%), Gaps = 8/399 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 321 EDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 380 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 381 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 439 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN- 281 + + + + VP GVI+RTA ++ E++RD E L W+++++ + Sbjct: 440 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQI 497 Query: 282 -SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 + +P L+Y E ++ R +RD++ +D S++I+SG++ + ++ + P A + ++ Sbjct: 498 TTSSPSLLYGEPDMTVRVVRDIFNEDFSKVIISGDQAWETIHGYVNHVAPDLADRLSRWT 557 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTA 399 +F I+ QL +V LPS G ++I++TEA++ IDVN+G+ T + +E+T Sbjct: 558 SEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGKFTGQGGNLEETV 617 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 + NLEAAEEI RQLRLRDL G++V+DFIDM + N V +++ E L +DR + QV + Sbjct: 618 TRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEV 677 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++ GL++M+R+R+ +LES ++ C +C G G I + Sbjct: 678 TSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 716 Score = 93.5 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAF+D G Sbjct: 303 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIG 362 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 363 KGRNAVLYAGEV 374 >gi|227503064|ref|ZP_03933113.1| ribonuclease E [Corynebacterium accolens ATCC 49725] gi|227076125|gb|EEI14088.1| ribonuclease E [Corynebacterium accolens ATCC 49725] Length = 1285 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 144/589 (24%), Positives = 252/589 (42%), Gaps = 36/589 (6%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K R ++ +K+ +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 473 GEIDWRKTKLHGRSRKVENTLKSGDQILVQVAKDPIGHKGARLTTRISLAGRYLVYVPG- 531 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + G VP G I+RTA + + I D + L W+ Sbjct: 532 GRSAGISRKLPAPERKR--LKDILGRVVPGDGGAIIRTAAENVPEEAIATDVQRLHNRWE 589 Query: 274 N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + +E + P +YEE N++ + +RDL+ +D +IV G++ + +++ + Sbjct: 590 DISAQAKKEKSSKGAKPVTLYEEPNMLIKVVRDLFNEDFHRLIVDGKRSFNTVNAYVESM 649 Query: 329 MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P A V +Y+ F I+ QL +V LPS G ++I++TEA+ IDV Sbjct: 650 APDLADRVVRYKPKDHGGQDAFAAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 709 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 710 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 769 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499 KE+L +DR R QV +++ GL++M+R+R+ + ++E+ + C +C G G I + Sbjct: 770 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECEHCHGRGIIIHEYPVDEAE 829 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 + H ++++ E + Sbjct: 830 DNHSGHHSHGSSKAHKKPEHDPQQHP--AAVVMHEHDDEDERAEKKGQKGRKGRRNATSQ 887 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + + + D Q+PS ++ + V D+ + +S + + Sbjct: 888 PQKYQ---------KTDAPLYGNEDEQSPSLEELVANVVVDDETGDSEQKDSQKRADNAR 938 Query: 620 VSEESTGVIRKRRRRRRRRRPATD--------HHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + G ++++RRR + ++ + A ++ +Q D P+ Sbjct: 939 GHRDDRGRSEGKQKKRRRAQKKSEVSEIEAIAYAAADNAAESDEVQEFNSYVPDGREAPA 998 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 T + P + KK Sbjct: 999 KEKKRTQRGKKPRRATRTSPATRRAQEQPNKRQQAAEGKAEEKKAEVAD 1047 Score = 86.6 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E +E + + GNIYL +V V PS++AAFVD G R+G L EI Sbjct: 416 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 475 >gi|86605526|ref|YP_474289.1| ribonuclease [Synechococcus sp. JA-3-3Ab] gi|86554068|gb|ABC99026.1| ribonuclease, Rne/Rng family [Synechococcus sp. JA-3-3Ab] Length = 711 Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats. Identities = 146/561 (26%), Positives = 244/561 (43%), Gaps = 31/561 (5%) Query: 132 ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY-CIQEVIKNRQILLVQIVKEERG 190 E SI +A ++ S + + P + KR + I E++ +Q +LVQ++KE G Sbjct: 43 ENVLPSIDAAFVNIGSGERNGFIHVSDLGPLRLKRNHASISELVLPQQKVLVQVMKEPTG 102 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250 NKG +T L+ GRY VL P KG +SR+I + +R LK L P MG+++R Sbjct: 103 NKGPRLTGDLAFPGRYLVLRP-YGKGVHLSRRIEDREERNRLKS-LAILIKPPQMGLLVR 160 Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310 T ++ + D E L +LW+++++ + P L+ + + I+R +RD+Y +D++ I Sbjct: 161 TEAEGVSEEAMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFIQRVLRDVYSEDVNRI 220 Query: 311 IVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 + G + + +++ V + +P PI + + + V LPS Sbjct: 221 VTDSPAGAKRVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVNAVIRQALRPRVDLPS 280 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 GY++I TEAL IDVNSG T+ +T L TN EAA EIARQLRLR++AG+IVVDF Sbjct: 281 GGYIVIEPTEALTVIDVNSGSFTQSATSRETVLWTNCEAATEIARQLRLRNIAGVIVVDF 340 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM+ +++ V + ++L D+AR QV +S GL+E++R+R S+ E C C Sbjct: 341 IDMDSRRDQLLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQGQSLYEIFGHSCPTC 400 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--- 544 +G G + + V + V L + ++ + Sbjct: 401 EGLGIL--------------ARLPGAEPGRLLTVESGLPVTLPTEGEDGSSPSLLQEGDS 446 Query: 545 -RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 R G+ + ++ + A S + E V Sbjct: 447 QRAGLRL---GSNGVSRTEGRVSLSRSRTAPEQRPDLEESRIEVGRKRSRDEWVDPRVGQ 503 Query: 604 LPIPKSESLEDIQDNIVSEE----STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 P+ +S E + E+ + G ++R+ RR D + G D + Sbjct: 504 RPVSRSGEAEGGSLEVPGEDLLQPAGGGAEQKRKESRRPSRGEDGEEQGSHRDQPTAGRS 563 Query: 660 IDDSFDMYMEPSDITNHNLLE 680 E +E Sbjct: 564 ARAGGVESSESRPARQAITVE 584 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++ID H RV V +++V+EL G++Y+ V V PS+ AAFV Sbjct: 1 MPRQIVIDEQH----RVAAVFAEDQVQELIV--ASGTYQVGDVYVGIVENVLPSIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G G R+GF+ ++ P Sbjct: 55 NIGSGERNGFIHVSDLGP 72 >gi|323141407|ref|ZP_08076298.1| S1 RNA binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322414156|gb|EFY04984.1| S1 RNA binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 471 Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 202/391 (51%), Gaps = 6/391 (1%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q L+VQI K+ RG KG T ++L GRY VL+P ISRKIT+ + + Sbjct: 78 EGQSLIVQISKDARGTKGPTATREITLPGRYVVLLPQADYVG-ISRKITDKEE-RERLNT 135 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 P GMG+++RTA + ++RD + L W + + AP L+ E +L Sbjct: 136 ICEGVRPVGMGIVVRTAATGVARELLERDVQELAADWKVLAARERVAKAPCLLRRELDLP 195 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 R +RD +++EI++ Y+ ++ + + + V Y+ IF + Sbjct: 196 IRIVRDYLRPELTEIVIDNLPIYKRVEELLAEMPQAQDIRVTLYQGLEDIFEYHKQGEAV 255 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + +VTLPS GY++I+ TEA+ IDVNSG+ + +E+T +Q N EAA EIARQLR Sbjct: 256 AGISDRQVTLPSGGYLVIDHTEAMTVIDVNSGKFSGRENLEETIMQINREAALEIARQLR 315 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LRD+ G+IVVDFIDM + R + L+++LK D+ +V I+ L+E++R++ R + Sbjct: 316 LRDIGGIIVVDFIDMHTDNHKREIINSLQQALKGDKMHPKVQDITVLNLVEITRKKSRQN 375 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSI-LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 + C C G+G ++S+ +++L I R + ++ N+++ + + +L+ Sbjct: 376 LSSVLYTPCPVCNGSGRVQSRENLSLEIKRRLRTLLKRRSSSKNLLITANPWLAEWLV-- 433 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +E ++ V L + F I Sbjct: 434 -SKDLRAWERELACTLKVEADASLHVESFMI 463 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K++I A+ +E R+ +L + + E E + ++ + G+++ KV V +QAAFVD Sbjct: 1 MIAKIIISANE-DENRMGLLENGILMEYLVERKEEQHLVGSVFKGKVCNVVRGIQAAFVD 59 Query: 61 YGGNRHGFLPF 71 G ++ FL Sbjct: 60 IGLEQNAFLYL 70 >gi|306836703|ref|ZP_07469666.1| ribonuclease E [Corynebacterium accolens ATCC 49726] gi|304567381|gb|EFM42983.1| ribonuclease E [Corynebacterium accolens ATCC 49726] Length = 1230 Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 144/592 (24%), Positives = 246/592 (41%), Gaps = 39/592 (6%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K R ++ +K+ +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 473 GEIDWRKTKLHGRSRKVENTLKSGDQILVQVAKDPIGHKGARLTTRISLAGRYLVYVPG- 531 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + G VP G I+RTA + + I D + L W+ Sbjct: 532 GRSAGISRKLPAPERKR--LKEILGRVVPGDGGAIIRTAAENVPEEAIATDVQRLHNRWE 589 Query: 274 N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + +E + P +YEE N++ + +RDL+ +D +IV G++ + +++ + Sbjct: 590 DISAQAKKEKSSKGAKPVTLYEEPNMLIKVVRDLFNEDFHRLIVDGKRSFNTVNAYVESM 649 Query: 329 MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P A V +Y+ F I+ QL +V LPS G ++I++TEA+ IDV Sbjct: 650 APDLADRVVRYKPKDHGGQDAFAAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 709 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 710 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 769 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499 KE+L +DR R QV +++ GL++M+R+R+ + ++E+ + C +C G G I + Sbjct: 770 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECEHCHGRGIIIHEYPVDEAE 829 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 + H V + E + Sbjct: 830 DNHSGHHSHGSAKAHKKPEHDPQQHPAAVAMHEHDDEDERA--EEKGQKGRKGRRNATSQ 887 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + + + D Q+PS ++ + V D+ + +S + D Sbjct: 888 PQKYQ---------KTDAPLYGNEDEQSPSLEELVANVVVDDETGDPEQKDSRKRADDRD 938 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAG-----------VVSDVSSIQNVIDDSFDMYM 668 + + ++++RR A + ++ +Q D Sbjct: 939 RAHRDERSRDRGEGKQKKRRRAQKKSEVSEIEAIAYAAADNAAESDEVQEFNSYVPDGRE 998 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 P+ T + P + KK Sbjct: 999 APAKEKKRTQRGKKPRRATRTSPATRRAQEQPNKRQQAAEGKAEEKKAEVAD 1050 Score = 86.2 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E +E + + GNIYL +V V PS++AAFVD G R+G L EI Sbjct: 416 TQVGVLEDDLLVEHFVTTEAQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 475 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 2/145 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK + S + + ++ + E K+E + EE+ Sbjct: 1003 EKKRTQRGKKPRRATRTSPATRRAQEQPNKRQQAAEGKAEEKKAEVAD--APEKTYEEAV 1060 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 RR+RR R + + D + Q S D+ + + G Sbjct: 1061 AEFEASPRRKRRTRGNSRSDNRPRPEDFAQPQQAESASSSDKARGDDVAQQEGEQQQSRG 1120 Query: 686 FTENYDVSIPPVSTPEMESSNSSSD 710 + P + + Sbjct: 1121 KARGRGRRRSVRTQPNSRRATVQAS 1145 >gi|329934590|ref|ZP_08284631.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Streptomyces griseoaurantiacus M045] gi|329305412|gb|EGG49268.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Streptomyces griseoaurantiacus M045] Length = 1455 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 142/554 (25%), Positives = 250/554 (45%), Gaps = 11/554 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ + Sbjct: 771 GPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLPD 829 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS-VA 284 + + VP GVI+RTA ++ E++RD E L W+ +++ + N A Sbjct: 830 TERAR--LKSILKKVVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNGGTA 887 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+Y E ++ R +RD++ +D S+++VSG++ + ++ + P A + ++ Sbjct: 888 PTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAPRLSRWTSETD 947 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403 +F I+ QL +V LPS G ++I++TEA+V IDVN+G+ T + +E+T + N Sbjct: 948 VFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNN 1007 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV +++ G Sbjct: 1008 LEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 1067 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS--SVALSILRSVEEYLLQYTAHNIIV 521 L++M+R+R+ +LES ++ C +C G G I S + + + Sbjct: 1068 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSASGGGGGGGKRRKRGRGGADQPH 1127 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI-EKGSPVQALVNTGHK 580 + + E A + E + E +P + L ++ + Sbjct: 1128 EHETHETHETHDTHETHEHETHAAAVATAVEEAEPERRQPAAEVPEAFAPDEELYSSVAE 1187 Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 + + + A P + Q+ V EE+ +R + P Sbjct: 1188 AEAAATRGRSRRRATRRSSAPAGAPKRAEAEVPTAQEVTVEEETARPVRPEPAEAVQAEP 1247 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 A + ++ + + E T P + Sbjct: 1248 AAAEDPVVEAPEEAAPAAPKGRTRRRAVRKVSAPVTAPEE---AVVTVAEPAPAPVEAPE 1304 Query: 701 EMESSNSSSDPIVK 714 + +++ P + Sbjct: 1305 QAAPEQTAAQPAEQ 1318 Score = 92.0 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAF+D G Sbjct: 690 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIG 749 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 750 KGRNAVLYAGEV 761 >gi|318060733|ref|ZP_07979456.1| ribonuclease E [Streptomyces sp. SA3_actG] Length = 881 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 141 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 199 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + VP GVI+RTA ++ E++RD E L W+++++ A Sbjct: 200 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 257 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+Y E ++ R +RD++ +D ++++VSG++ + ++ + P + ++ Sbjct: 258 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 317 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 318 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 377 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 378 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 437 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 438 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 472 Score = 92.3 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D+ + E GN+YL KV V PS++AAF+D G Sbjct: 63 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 122 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 123 KGRNAVLYAGEV 134 >gi|50954527|ref|YP_061815.1| ribonuclease G [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951009|gb|AAT88710.1| ribonuclease G [Leifsonia xyli subsp. xyli str. CTCB07] Length = 847 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 122/476 (25%), Positives = 214/476 (44%), Gaps = 23/476 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ +K +LVQ+ K+ G+KGA +T+ +SL G Y V +PN Sbjct: 319 GEVDWDAVETGNQPRRIELALKPGDRVLVQVTKDPVGHKGARLTSQISLPGHYLVYVPNG 378 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K +P GVI+RTA T+ ++ D L W Sbjct: 379 SMNG-ISRKLPDTERSRLKK--ILKEVLPESAGVIVRTAAEGATEEQLTLDVTRLTAQWA 435 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ AP L++ E +L+ + IRD++ +D +++++G+ + + +++ + P Sbjct: 436 DISRQNETQQAPALLHSEPDLLIKIIRDVFNEDFQKLVIAGDDARQTIESYLRQVAPDLL 495 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 V Y F I Q++ + +V LPS G ++I++TEA+ +DVN+G+ Sbjct: 496 DRVEAYTGERDAFDEHRITEQIEKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSG 555 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +DR Sbjct: 556 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRT 615 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS-----VALSILRSV 507 + QV +++ GL++M+R+++ +LE+ ++ C C G G I Sbjct: 616 KHQVAEVTSLGLVQMTRKKLSLGLLETFSEACEVCAGRGVIVHHDPVVKSRQPQQPQNER 675 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 + + + + + + + A E Sbjct: 676 RRGRGGNGSGSSAPAHSGSGTHAITDDAKNALAQIAA------------STIHAHAVDEG 723 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 PV+ + ++ AP + Q + S ED+ + Sbjct: 724 AKPVEGAASVAEAQ--ETPAPKKRRRKGKSAQRDEQKTAAAGTSGEDVPAAAGPDR 777 Score = 87.7 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY-- 61 + ++ S ++ VL D + E + + GN+YL +V V PS++AAFVD Sbjct: 249 RQMVVRSKGGRIQIGVLEDKVLVEHYVARSQEASLIGNVYLGRVQNVLPSMEAAFVDIGR 308 Query: 62 GGNRHGFLPFLEIHPD 77 G R+ L E+ D Sbjct: 309 GRGRNAVLYSGEVDWD 324 >gi|119962820|ref|YP_948103.1| ribonuclease Rne/Rng family protein [Arthrobacter aurescens TC1] gi|119949679|gb|ABM08590.1| putative ribonuclease, Rne/Rng family domain protein [Arthrobacter aurescens TC1] Length = 1109 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 132/561 (23%), Positives = 245/561 (43%), Gaps = 7/561 (1%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ ++++ + + V+ SL + + Sbjct: 404 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 463 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 464 RGRNAVLYAGEVNWDAVNLEGQPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPG 523 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RY V +P S ISRK+ + + + +P GVI+RTA ++ E+ D Sbjct: 524 RYLVYVPGGSMTG-ISRKLPDVERNRLKR--ILKDRLPENAGVIVRTAAEGASEEELTHD 580 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ + A ++ L+Y E +L + +RD++ +D S++IVSG+ + + Sbjct: 581 INRLRAQWEGIEGQASSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGDDAWDTIE 640 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P + ++ IF I+ Q+ + +V LPS G ++I++TEA+ + Sbjct: 641 AYVTYVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVV 700 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEE+ RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 701 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 760 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++ E L +DR + QV +++ GL++M+R+R+ + +LE + C +C G G + V Sbjct: 761 RMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEHCAGRGVVTHDEPVEH 820 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 V + A ++ I E A+ + + + Sbjct: 821 RRANVVAAEHHRPHAEAQQPAARTERKRRRGKGGGQAIAEAPAQVHTTTSAPAAPSAPVE 880 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + +A + + + A + +++A + + S Sbjct: 881 AQDPARQAKAEATRAALATIAAAAHAAHLHDDEVHRAEEQARAAGHEPA-VSPASGTAAS 939 Query: 622 EESTGVIRKRRRRRRRRRPAT 642 E+ R+ +R + A Sbjct: 940 GEAGATAREAEKREAAVQEAR 960 Score = 93.9 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 + +I + ++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 405 RQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 464 Query: 64 NRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 465 GRNAVLYAGEVNWD 478 >gi|319779488|ref|YP_004130401.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Taylorella equigenitalis MCE9] gi|317109512|gb|ADU92258.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Taylorella equigenitalis MCE9] Length = 420 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 2/399 (0%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+++ Q LLVQ++K +KGA ++ +++AGR V MP IS++I Sbjct: 20 PKIEKLFFEGQTLLVQVIKNPVNDKGARLSNQINIAGRIMVYMPFNEHIG-ISQRIEIEE 78 Query: 228 DRKNLKEIARGLEVPAGMG-VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +R+ L++ + L +G I+RT + + ++KRD +YL W+ +++ A NS AP Sbjct: 79 EREKLRDWVQNLRGSDDVGGYIIRTFAETCEESDLKRDMDYLRLQWEAIQKRAKNSKAPK 138 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 LVYEE +L R +RD + + I + E K + P+ + Y+ PIF Sbjct: 139 LVYEELSLTHRVLRDFANANTTNIEIDSEPELERMKAWSTEYTPAVTEKLNLYKASRPIF 198 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + IE ++ V LPS GY+I + TEAL SIDVN+G DT L+TNLEA Sbjct: 199 DLNNIEEDIEIALSQRVNLPSGGYLIFDSTEALTSIDVNTGSFLGSRNFNDTILKTNLEA 258 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 + EIARQLRLR++ G+I++DFIDM + + V LK +L +DR R V S FGL+E Sbjct: 259 SLEIARQLRLRNVGGIIIIDFIDMVDNGHKEQVMCSLKNALSRDRVRTTVNDFSCFGLVE 318 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R SS+ + C C+G G +++ ++ I+R ++ + + S Sbjct: 319 MTRKRAHSSLASMLMEKCPTCEGRGSVKTAKTIVYQIMREIQREAKLFNPTEFRLILSSQ 378 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ L+++ G I++ + + +++ I Sbjct: 379 VLDLFLDEESQYFTALSDAIGKPISLEVDDHYSQEMYDI 417 >gi|145595994|ref|YP_001160291.1| ribonuclease [Salinispora tropica CNB-440] gi|145305331|gb|ABP55913.1| ribonuclease, Rne/Rng family [Salinispora tropica CNB-440] Length = 1024 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 131/462 (28%), Positives = 227/462 (49%), Gaps = 12/462 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ +K+ +LVQ+ K+ G+KGA +T++++L+GR+ V +P Sbjct: 547 GEVNWDATGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPG- 605 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ L++ + L G GVI+RTA T+ E+ RD + L W+ Sbjct: 606 GNASGISRKLPDNERKR-LRDALKKLVPE-GAGVIVRTAAEGATEDELARDVKRLQAQWE 663 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A AP L+YEE +L+ R +RDL+ +D E+++ GE Y + ++ + P Sbjct: 664 DIQAKAGRGGAPVLLYEEPDLVIRVVRDLFNEDFRELMIEGEGAYDLVESYLSHVSPDLV 723 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +R++ +F I+ Q+ +V LPS G+++I++TEA+ +DVN+G+ T Sbjct: 724 ARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 783 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V ++L E L +DR Sbjct: 784 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 843 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + QV I++ GL++M+R+RI + +LE+ ++ C CKG G I V + Sbjct: 844 KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGLILHTEPVPEKPRAGGTGEKV 903 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG--------IELADKLFY 564 + A + T+VE E + Sbjct: 904 KAVASAEAGGSSRRRARKGAVAAERTVVESEEAQDAGTTDTPEVTATTPGADYYDTMGYD 963 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 + + + D+ + + + V D+ Sbjct: 964 LSRYEVETPAPSVVASQSGDTARLAAPDDPDAVGGDDGEESE 1005 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 490 TQIAVLEDGVLVEHYVTRNSAVTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 549 Query: 75 HPD 77 + D Sbjct: 550 NWD 552 >gi|330937967|gb|EGH41754.1| ribonuclease G [Pseudomonas syringae pv. pisi str. 1704B] Length = 455 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 5/373 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++I+ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 +M+R+R R S+ + + C C G G +++ ++ I R + Y A V + Sbjct: 383 QMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQ 442 Query: 526 DVVLYLLNQKRAT 538 VV LL+++ Sbjct: 443 RVVDRLLDEESGN 455 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|269125790|ref|YP_003299160.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183] gi|268310748|gb|ACY97122.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183] Length = 1041 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 127/490 (25%), Positives = 229/490 (46%), Gaps = 26/490 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G DV + I++ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 577 GEVNWDVAGLVGQPRRIEQALKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDG 636 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + +P GVI+RTA T+ E+ D L W+ Sbjct: 637 SMTG-ISRKLPDKERSR--LKQVLKKIMPDNAGVIVRTAAEGATEEELAGDIARLSAQWE 693 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ + A + AP L++ E +L R +RD++ +D S+++VSG+ + +++ + P A Sbjct: 694 HIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMVSEYVGYVAPHLA 753 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 + ++E + I+ Q+ + +V LPS G ++I++TEA+ +DVN+G+ T + Sbjct: 754 ERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQG 813 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 814 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLLECLSRDRT 873 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + QV +++ GL++M+R+R+ +LE+ ++ C C G G + + Sbjct: 874 KHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRGI--HIQTTPVEHGSDKSGGRR 931 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 + ++ + + ++ A E E + + Sbjct: 932 RKRKGDVERAVEEKLAKHEAEKRAAAKREQETQ--------------------AASAEPA 971 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + A V EA P E + N + + Sbjct: 972 QPAGEPAQEPAQTVAEVPQAAPAAVETAEAETAEPPVEVPDAAAGNGRRRVRRSRAKTKD 1031 Query: 633 RRRRRRRPAT 642 + + Sbjct: 1032 KAEVAGSAES 1041 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 40/75 (53%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 508 ERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDIG 567 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 568 KGRNAVLYAGEVNWD 582 >gi|284030265|ref|YP_003380196.1| ribonuclease, Rne/Rng family [Kribbella flavida DSM 17836] gi|283809558|gb|ADB31397.1| ribonuclease, Rne/Rng family [Kribbella flavida DSM 17836] Length = 1119 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 142/589 (24%), Positives = 250/589 (42%), Gaps = 19/589 (3%) Query: 102 AVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPED 159 AV++D + + + + + + + S+ +A D+ V G + Sbjct: 544 AVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVDWN 603 Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 I+ V+K+ Q +LVQ+ K+ G+KGA +T +SL GRY V +P G I Sbjct: 604 TLGGGNGPRKIESVLKSGQAVLVQVTKDPIGHKGARLTNQISLPGRYVVYVPRGGNGG-I 662 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SRK+ + + + VP GVI+RTA T+ E+ D L W+++ + + Sbjct: 663 SRKLPDTERSR--LKGILKDIVPDEAGVIVRTAAEGATEEELTADVSRLQAYWEDIDKKS 720 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 + AP L++ E +L+ R +RDL+ +D +++++SG+ + + +++ + P A V ++ Sbjct: 721 KSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQVSEYVSAVAPHLAERVAKW 780 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDT 398 +F I+ Q+ +V LPS G +II++TEA+ +DVN+G+ T +E+T Sbjct: 781 TGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGGNLEET 840 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR + QV Sbjct: 841 VTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAE 900 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 +++ GL++M+R+RI + +LE+ + C +C G G I + A Sbjct: 901 VTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLILHDEPKESR-----RRQDGRGGAEQ 955 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 H H + +K + + R ++ S + Sbjct: 956 KNGHDHKNGTGDGEGKKGSRRNRGKGR-------RDDEHTETPE-PVQHNSDAAQRLAQI 1007 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + A + E + P + S S Sbjct: 1008 AAATVNGNAGNGHGTSEPATEPATEAPAAEDRGNGPADRTDGSAGSGAEAGADAGTGEAT 1067 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 TD + S S + + + E + Sbjct: 1068 AEPTDAAEPNGSSRSSRRRRSSRSRSKSAGDEGGSAPDSGGEAPVELVS 1116 Score = 90.4 bits (222), Expect = 9e-16, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 M+I A + T++ V DN + E E + + GN+YL +V V PS++AAF+D G Sbjct: 532 MVIRA-RGDLTQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIGKG 590 Query: 65 RHGFLPFLEI 74 R+ L E+ Sbjct: 591 RNAVLYAGEV 600 >gi|302560669|ref|ZP_07313011.1| ribonuclease, Rne/Rng family domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302478287|gb|EFL41380.1| ribonuclease, Rne/Rng family domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 556 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 121/347 (34%), Positives = 201/347 (57%), Gaps = 6/347 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 180 GEVNFEALGMGHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 239 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L W+ Sbjct: 240 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWE 296 Query: 274 NVRELALNS--VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 +++ + N AP L+Y E ++ R +RD++ +D S+++VSG++ + ++ + P Sbjct: 297 EIKKKSKNGAGSAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWETVHGYVSHVAPD 356 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 A + ++ +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T Sbjct: 357 LAERLSRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGKFTG 416 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 + +E+T + NLEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +D Sbjct: 417 QGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRD 476 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 R + QV +++ GL++M+R+R+ +LES ++ C +C G G I Sbjct: 477 RTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 523 Score = 95.8 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ H + T++ VL D + E E GN+YL KV V PS++AAF+D G Sbjct: 111 ERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 170 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 171 KGRNAVLYAGEV 182 >gi|295838917|ref|ZP_06825850.1| ribonuclease, Rne/Rng family domain-containing protein [Streptomyces sp. SPB74] gi|295827249|gb|EDY42405.2| ribonuclease, Rne/Rng family domain-containing protein [Streptomyces sp. SPB74] Length = 713 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 118/335 (35%), Positives = 198/335 (59%), Gaps = 4/335 (1%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 235 HHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 293 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + VP GVI+RTA ++ E++RD E L W+++R+ A Sbjct: 294 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIRKKAKTGN 351 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+Y E ++ R +RD++ +D ++++VSG++ + ++ + P + ++ Sbjct: 352 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETVHGYVSHVAPDLVGRLSRWTSEV 411 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 412 DVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 471 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 472 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 531 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 532 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 566 Score = 92.0 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D+ + E GN+YL KV V PS++AAF+D G Sbjct: 157 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 216 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 217 KGRNAVLYAGEV 228 >gi|304382112|ref|ZP_07364623.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973] gi|304336710|gb|EFM02935.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973] Length = 524 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 136/502 (27%), Positives = 240/502 (47%), Gaps = 20/502 (3%) Query: 81 IPFSDRQ---ALLKESNIAQTDSEAVADDVTHGDVTIPN-------------DHSLEEVA 124 I D++ ALL++ + + +E + + G++ + D E A Sbjct: 7 IDVRDKEISIALLEDKRLVEYQNEPRSASFSVGNIYVAKVKKLMPGLNASFVDVGYERDA 66 Query: 125 PIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQI 184 + + S V ++ + + S K+ + + + Q +LVQ+ Sbjct: 67 FLHYLDLGGQFNSYGKYLKQVEADRKKLYPFSKATRLPDLKKDGSVTQTLTIGQEVLVQV 126 Query: 185 VKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAG 244 VKE KG +T LS AGRY VL+P K S+ + + LK++ ++ Sbjct: 127 VKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSSKIKSGEERAR-LKQLIHSIKPK-N 184 Query: 245 MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLY 303 G+I+RT R E+ + + L++ WD+ P L++EE +RDL+ Sbjct: 185 FGIIVRTVAEGRRVAELDTELKVLLKRWDDAIAKVQKTQKRPQLIFEETGRAVAMLRDLF 244 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 I ++ E+ + E K ++ L+ P A IV+QY PIF I Q+ S V Sbjct: 245 DPTYENIYINNEEVFNEVKQYVTLIAPEKAAIVKQYTGNVPIFDNFNITKQIKSGFGKAV 304 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGL 422 Y+II TEAL +DVNSG TR ++ AL+ NL AA+E+ARQLRLRD+ G+ Sbjct: 305 NYKHGAYLIIEHTEALHVVDVNSGNRTRSENGQEANALEVNLGAADELARQLRLRDMGGI 364 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 IVVDFIDM ++ + + +++ ++++KDRAR + +S FGL++++RQR+R ++ + + Sbjct: 365 IVVDFIDMNVAEDRQLLYERMCKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDVNVDE 424 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 C C G G I+S + ++ + + +H H V Y+ + ++ Sbjct: 425 TCPTCFGKGKIKSSFLFTDQLEGKIDHLVNKIGITKFYLHVHPYVAAYINQGIVSLKRKW 484 Query: 543 EARFGVSINVVIGIELADKLFY 564 + R+G ++++ +LA + Sbjct: 485 QLRYGWGVHIIPSQKLAFLQYE 506 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D R+ E E GNIY+AKV ++ P L A+FVD Sbjct: 1 MTSEVVIDVRD-KEISIALLEDKRLVEYQNEPRSASFSVGNIYVAKVKKLMPGLNASFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQALLKESNIAQTDSEAVA 104 G R FL +L++ Y + +DR+ L S + Sbjct: 60 VGYERDAFLHYLDLGGQFNSYGKYLKQVEADRKKLYPFSKATRLPDLKKD 109 >gi|323345438|ref|ZP_08085661.1| ribonuclease G [Prevotella oralis ATCC 33269] gi|323093552|gb|EFZ36130.1| ribonuclease G [Prevotella oralis ATCC 33269] Length = 524 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 120/401 (29%), Positives = 207/401 (51%), Gaps = 4/401 (0%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + +Q+ + Q +LVQIVKE KG +T LS AGR+ VL+P K S+ + Sbjct: 108 KSGSVQQTLTVGQEVLVQIVKEPISTKGPRLTGELSFAGRFLVLIPFGDKVSVSSKIKSG 167 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN-SVA 284 + + P GVI+RT + E+ + + L + W++ Sbjct: 168 EERAR--LKQLIHSVRPKNCGVIVRTVAEGKRVAELDAELKVLAKRWEDALVKVQKTQKR 225 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P LV+EE IRD++ + I V+ + + E KD++ L+ P+ A IV+ Y P Sbjct: 226 PQLVFEEKGRAIALIRDIFNPNFENIYVNDKDAFNEIKDYVTLIAPAKAGIVKMYTGKVP 285 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTN 403 IF + Q+ + V Y+II TEAL +DVNSG R+ E E AL+ N Sbjct: 286 IFDNFNVTKQIKASFGKTVNYKHGSYLIIEHTEALHVVDVNSGNRARNEKGQEANALEVN 345 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 L AA+E+ARQLRLRD+ G+IVVDFIDM ++ + + +++ +++++DRAR + +S FG Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQQDRARHNILPLSKFG 405 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++++RQR+R ++ + + C C G+G IRS + +++ + + +H Sbjct: 406 LMQITRQRVRPAMDVNVEENCPTCFGSGKIRSSILFTERLESKIDQLVNKIGVKKFYLHV 465 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 H V Y+ + +++ ++G ++++ +LA + Sbjct: 466 HPYVAAYINQGVFSLKRKWQLKYGWGVHIISSQKLAFLQYE 506 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E +L D R+ E E + GNIY+AK+ ++ P L A FVD Sbjct: 1 MTSEVVIDV-QEKEISTALLEDKRLVEYQNEPKSASFSVGNIYIAKIKKLMPGLNACFVD 59 Query: 61 YGGNRHGFLPFLEIHPD------YYQIPFSDRQAL 89 G R FL +L++ Y + SDR+ L Sbjct: 60 VGYERDAFLHYLDLGSQFNSYAKYLKQVQSDRKRL 94 >gi|170782192|ref|YP_001710525.1| putative ribonuclease [Clavibacter michiganensis subsp. sepedonicus] gi|169156761|emb|CAQ01923.1| putative ribonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 1015 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 126/585 (21%), Positives = 239/585 (40%), Gaps = 60/585 (10%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+ +K +LVQ+ K+ G+KGA +T+ +SL GRY V +PN S ISRK+ + Sbjct: 442 RRIEVALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNG-ISRKLPDTE 500 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + LK+ + + +GVI+RTA T+ ++K D E L W + + AP L Sbjct: 501 RAR-LKKTLKEVLPE-NVGVIVRTAAEGATEEQLKLDVERLTSQWAEISRQVEKAQAPAL 558 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 ++ E +L+ + IRD++ +D E+++ G + +++ + P V+ Y F Sbjct: 559 LHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQAYSGEKDSFD 618 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEA 406 + Q++ +V LPS G ++I++TEA+ +DVN+G+ +E+T + NLEA Sbjct: 619 HYRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEA 678 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E L +DR + QV +++ GL++ Sbjct: 679 AEEIVRQMRLRDIGGIIVVDFIDMVLETNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQ 738 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS------------------------ 502 M+R+++ +LES ++ C C G G I + Sbjct: 739 MTRKKLGLGLLESFSENCETCAGRGIIIHHDPLMAHKQTPQEPVQGQGRRRGGKGQQEHG 798 Query: 503 ---ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 + T + + R+ + + + Sbjct: 799 TGGGNGNGGGRGNGGGQAQQQQRTPAASTHSITEDARSALAKI-----------ATSTIQ 847 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 I++ V + + + ++ + + ++ S+ Sbjct: 848 TVNEAIDRVEDVVRTPDETTEAAAPAEGAPVAEQPRGDRPRRSRGGRGRASSVVADATEQ 907 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ + D + +++S +EP + + Sbjct: 908 QPPQAPVAE----------------DPSAPAEDPTPADAPVEESARSTLEPREAIRLEPV 951 Query: 680 E--NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + ++ S + P K+ + R Sbjct: 952 QILDIPVASARTAPRRVSSADAEQLLGSVLDALPQPKEPGQGRSR 996 Score = 92.0 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 I S + ++ VL D + E + + GN+YL +V V PS++AAF+D G R+ Sbjct: 359 IVRSRDGKIQIGVLEDQVLVEHYVARADEASLIGNVYLGRVQNVLPSMEAAFIDIGRGRN 418 Query: 67 GFLPFLEI 74 L E+ Sbjct: 419 AVLYSGEV 426 >gi|311896012|dbj|BAJ28420.1| putative ribonuclease [Kitasatospora setae KM-6054] Length = 1238 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 4/335 (1%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 I+ V+K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 604 HGGSRRIESVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPEGSMTG-ISRKL 662 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + VP GVI+RTA ++ E+ RD + L + W+ +++ A Sbjct: 663 PENERTR--LKQILKKIVPDDAGVIVRTAAEGASEEELTRDVQRLQQQWEEIQKKAATGN 720 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+Y E ++ R +RD++ +D +++IVSG + D++ + P ++++ Sbjct: 721 APALLYGEPDMTVRVVRDIFNEDFTKVIVSGTDAWNTIHDYVSNVAPDLTERLQRWTSDV 780 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ + +E+T + Sbjct: 781 DVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGKFVGQGGNLEETVTRN 840 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 N+EAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 841 NIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 900 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 901 GLVQMTRKRVGQGLLESFSEPCVHCNGRGVIVHMD 935 Score = 92.0 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E E GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 537 TQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV 596 >gi|311743037|ref|ZP_07716845.1| possible ribonuclease G [Aeromicrobium marinum DSM 15272] gi|311313717|gb|EFQ83626.1| possible ribonuclease G [Aeromicrobium marinum DSM 15272] Length = 865 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 129/429 (30%), Positives = 216/429 (50%), Gaps = 27/429 (6%) Query: 75 HPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETE 134 H DY QI + +L E +A+ ++ +V G V I Sbjct: 310 HDDYTQIAVLE-DKVLVEHYVARESQTSLIGNVYLGKVQNVLPSMEAAFIDIGAG----- 363 Query: 135 EESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194 + G + +Q I++V+ + Q +LVQ+ K+ G KGA Sbjct: 364 -------------RNAVIYAGEIDWSGLGNGKQRKIEDVLTSGQTVLVQVSKDPVGQKGA 410 Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254 +T+ +SL GR+ V +P + ISRK+ + + + +PA GVI+RTA Sbjct: 411 RLTSQVSLPGRFLVYVPG-GQTNGISRKLPDTERTR--LKTLLKEVLPADAGVIVRTAAE 467 Query: 255 SRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314 ++ ++ RD L W+++ AP L+Y E +L+ + +RDL+ +D + ++V G Sbjct: 468 GASEDQLTRDVASLKARWEDIERKVEAGKAPELLYSEPDLMIKVVRDLFNEDFTSLVVEG 527 Query: 315 EKGYREAKDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGY 370 + +++ + P A + ++E F IE Q+ +V LPS G Sbjct: 528 RDAWDNISGYVQHVAPDLAERLERWEPEEHDGRHAFAGFRIEEQIHKALDRKVWLPSGGS 587 Query: 371 VIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429 ++I++TEA+ +DVN+G+ T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFID Sbjct: 588 LVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFID 647 Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489 M + N V ++L E L +DR R QV +++ GL++M+R+RI + ++ES + C +CKG Sbjct: 648 MVLESNRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGLVESFSTDCEHCKG 707 Query: 490 AGYIRSQSS 498 G + Sbjct: 708 RGIVIQAEP 716 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 H + T++ VL D + E E + + GN+YL KV V PS++AAF+D G R+ + Sbjct: 310 HDDYTQIAVLEDKVLVEHYVARESQTSLIGNVYLGKVQNVLPSMEAAFIDIGAGRNAVIY 369 Query: 71 FLEI 74 EI Sbjct: 370 AGEI 373 >gi|297616890|ref|YP_003702049.1| ribonuclease, Rne/Rng family [Syntrophothermus lipocalidus DSM 12680] gi|297144727|gb|ADI01484.1| ribonuclease, Rne/Rng family [Syntrophothermus lipocalidus DSM 12680] Length = 474 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 126/406 (31%), Positives = 222/406 (54%), Gaps = 6/406 (1%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 ++F+ + + ++K Q +LVQ+ KE KGA VT +S+ GR+ VL+PN +G ++ Sbjct: 72 ENERFRNRGSVFSMLKKGQTVLVQVKKEAVAEKGARVTQDISIPGRHLVLLPNQ-EGVSV 130 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 SR+IT R++LK + + P G+GVI RT A EI + L+ LW+ ++ Sbjct: 131 SRRITCDSRRRDLKRLLEEAK-PQGVGVIARTNSAEAPNEEILAELRELLDLWERIKRSY 189 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 ++ P ++YE+ +I+ ++R+ + ++++ + ++ ++ P +A ++R Sbjct: 190 ESTRGPGVIYEDLGIIECSLREYLDVNTKAVLINHYEEKLRLEELLQDKHPDFAFLLRYE 249 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 E F + G+E +L V L GY++I++TEAL IDVNSG+ T E+TA Sbjct: 250 EGDL--FDKYGLEKELKHALGRRVWLRHGGYLVIDETEALTVIDVNSGKYTSNSEFEETA 307 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+TNL+AA EI RQLRLR + G+I++DFIDM++ + V +L++ L KD+A +V Sbjct: 308 LRTNLDAAAEIPRQLRLRRIGGIILIDFIDMKKPGHQEEVLNRLQQELSKDKAHTRVMGF 367 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 + G+LEM+RQ+ R + + T+ C +C+ G + + SVA I R + A+ I Sbjct: 368 TRLGILEMTRQKSRHRLRQLFTEGCRWCRSEGRLPAVGSVANEIRRKLVSMDYIL-ANTI 426 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + +V+ L R +++ E R G I + + + Sbjct: 427 LCQANPEVIRELSG-DRNSMIYIEERLGKRIVLEEEPGYDVATYKL 471 Score = 78.9 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 +I + ETRV + D ++ E+ +E+ K G IY V V L AFVD G NR Sbjct: 7 IIIEIYPWETRVGITEDGKLVEVFWENPESK--VGKIYKGIVKDVVRGLSCAFVDLGFNR 64 Query: 66 HGFLP 70 FL Sbjct: 65 SAFLY 69 >gi|238898798|ref|YP_002924480.1| RNase G (ribonuclease G) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466558|gb|ACQ68332.1| RNase G (ribonuclease G) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 495 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 118/411 (28%), Positives = 214/411 (52%), Gaps = 8/411 (1%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++ I E+I Q ++VQ++K+ G+KGA +TT+++LA RY VL + I Sbjct: 80 PPENEDQRQDIAELIHLGQNVMVQVIKDPLGSKGARLTTHITLASRYLVLT--MTPEVAI 137 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 S+++ N +R+ LK I G I+RTA + + D +L LW N+ Sbjct: 138 SQRLENEQERERLKNIVSSYCDKKN-GFIVRTAAEGMDEKALASDAAFLKSLWANIIAGK 196 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLY-----CKDISEIIVSGEKGYREAKDFMKLLMPSYAR 334 + + +++Y E L KR +RD + + + +++++ ++P Sbjct: 197 TQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQTYNSLKAFSEEYIPEMLPKLEH 256 Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 + ++ +F +E ++ SL +V L S G +II QTEA+ +ID+N+ Sbjct: 257 YPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLIIEQTEAMTTIDINTAGFVGYKN 316 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +E+T TN+EA IARQLRLR+L G+I++DFIDM+ +++ ++V LK++L +DR + Sbjct: 317 LEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKNEEHKKNVLSSLKKALNQDRVKT 376 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY 514 VG S GL+E++R+R ++ + C C+G G+ +S +V I R + + Sbjct: 377 TVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGWFKSPETVCHEIFRKMIQLHHSS 436 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + ++V+ + V +LL+QK T+ + + G I + I F+I Sbjct: 437 DSQQMLVYVSNRVSDFLLHQKAETLAKIQCLLGKKIQIKIDPLYTQNQFHI 487 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK--QIKGNIYLAKVTRVEPSLQAAF 58 M +++LI+ + ETRV + DN ++E+ E E++ + GNIY +VTR+ P +QAAF Sbjct: 1 MTSELLINVT-PFETRVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAF 59 Query: 59 VDYGGNRHGFLPFLEIHP 76 +D + FL +I Sbjct: 60 IDIQLEKAAFLHASDILS 77 >gi|251798390|ref|YP_003013121.1| ribonuclease, Rne/Rng family [Paenibacillus sp. JDR-2] gi|247546016|gb|ACT03035.1| ribonuclease, Rne/Rng family [Paenibacillus sp. JDR-2] Length = 411 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 183/344 (53%), Gaps = 5/344 (1%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + K+ + + I E++K Q L+VQ++KE G+KGA VTT+ +L GR+ V MP Sbjct: 64 IDDLLHPHLEKQPEHKPSITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWLVYMP 123 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + + + + G+I+RTA + + D + L +L Sbjct: 124 IAGYIGVSKKIMAESERSRIR--MIGERLRQGEEGIIMRTAAEGECEESLGADVDQLRQL 181 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W +V + A ++ AP ++ E L++RA+RD D+ E+ + Y EA +K + P Sbjct: 182 WTSVLQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEMTPH 241 Query: 332 YA---RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 A ++ ++ +F R G+ Q+++ + + L S G ++ ++TEAL IDVN+ + Sbjct: 242 LAGRLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVNTAK 301 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +EDT +TN+EAA+EIAR LR+RD+ G+IV+DFIDME + N V +L + K Sbjct: 302 YIGATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSDWAK 361 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 KDR + V + GLLE++R++ R + T+ C C G G Sbjct: 362 KDRTKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTGK 405 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 H E + VL D R+ + E + GN+Y +V V P +QAAFVD G ++ FL Sbjct: 4 HGELLQTAVLMDGRLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLY 63 Query: 71 FLE-IHPDYYQIP 82 + +HP + P Sbjct: 64 IDDLLHPHLEKQP 76 >gi|238060599|ref|ZP_04605308.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149] gi|237882410|gb|EEP71238.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149] Length = 1086 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 120/350 (34%), Positives = 209/350 (59%), Gaps = 4/350 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ +++ +LVQ+ K+ G+KGA +T++++L+GR+ V +PN Sbjct: 605 GEVNWDTTGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPN- 663 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ L+++ + L G GVI+RTA ++ E+ RD + L W+ Sbjct: 664 GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 721 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ + AP L+YEE +L+ R +RDL+ +D E+++ G++ Y + ++ + P Sbjct: 722 DIQAKVASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMVESYLSHVSPDLV 781 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 VR++ +F I+ Q+ +V LPS G+++I++TEA+ +DVN+G+ T Sbjct: 782 DRVRRHVGTSDVFATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 841 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V ++L E L +DR Sbjct: 842 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 901 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 + QV I++ GL++M+R+RI + +LE+ ++ C CKG G + V Sbjct: 902 KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGVVIHTEPVPEK 951 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 548 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 607 Query: 75 HPD 77 + D Sbjct: 608 NWD 610 >gi|255326316|ref|ZP_05367401.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296] gi|255296610|gb|EET75942.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296] Length = 1148 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 145/642 (22%), Positives = 257/642 (40%), Gaps = 44/642 (6%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ L+++ + + V+ SL + + Sbjct: 272 DRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 331 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G DV I+ +K +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 332 RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 391 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P S ISRK+ + + K + L P G GVI+RTA ++ E+ D Sbjct: 392 RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PEGAGVIVRTAAEGASEEELTHD 448 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ ++E A + ++Y+E +L+ + +RD++ +D + +IV GE + + Sbjct: 449 INRLRAQWEEIQEKANSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIE 508 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P +++++ +F I QL +V LPS G ++I++TEA+ + Sbjct: 509 AYVTYVAPDLVSRLQKWDSADDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 568 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 569 DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 628 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +L E L +DR + QV +++ GL++M+R+R+ + +LE ++ C C G G + ++ Sbjct: 629 RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEQCAGRGLVVHDQPLSG 688 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + + + R Sbjct: 689 RSGGASDYIHRHERNDRKRSRAAA------REDSRDQ----------------------- 719 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +K +++ + A S + + + +S Sbjct: 720 ----QKQDALESKKAERRNAMAAVAAASAQSEDVSEETASTRKKRKRRKRSRRAETAELS 775 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E + D V++V+ N I + +E E Sbjct: 776 LEQEIQGIAEAASEQAHAEVAQREDK--VAEVTE-GNWIGEQGGFSLEQLASAFDRAEEE 832 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 A + D + E SS K +R +RR+ Sbjct: 833 SAEDSS--KDSAEGRSDQDRSEERRSSKRGEKKSSRNRQRRE 872 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 ++ VL D + E + + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 284 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 343 Query: 75 HPD 77 + D Sbjct: 344 NWD 346 >gi|154250984|ref|YP_001411808.1| ribonuclease [Parvibaculum lavamentivorans DS-1] gi|154154934|gb|ABS62151.1| ribonuclease, Rne/Rng family [Parvibaculum lavamentivorans DS-1] Length = 506 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 113/406 (27%), Positives = 198/406 (48%), Gaps = 10/406 (2%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I ++ Q +LVQ VK+ +KGA ++ +++ GR VL+PN S G +SR+I + Sbjct: 99 PPISACVQEGQTILVQAVKDPISDKGARLSANVTIPGRLLVLVPNQS-GVALSRRIEDEP 157 Query: 228 DRKNLKEIARGLEVPAGM--------GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA 279 +R+ L + + G I+RTA T +I D L W VRE Sbjct: 158 ERERLAALVEEMVERFNPMGVTGEPAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETE 217 Query: 280 LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 S AP +V+ + + + + +RD D S +++ + EA+ + + MP ++ + Sbjct: 218 KRSTAPCVVFHDLDPVSKTLRDCVSADTSRVLIDCADAFGEAQRYCRRAMPEMLDRIQLF 277 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 P +F ++ ++++ + LPS G++ + TEAL +IDVNSGR T +E+T+ Sbjct: 278 NGPGQLFSLYDVDGEIEAALEPRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETS 337 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 ++ NLEA EI QLRLR GLIV+DFI + + N + V L E KDR Q+ + Sbjct: 338 VKINLEAVHEIVYQLRLRGTGGLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGM 397 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGL+EM+R+R+R + + T+ Y G ++ +++A +LR + + Sbjct: 398 SEFGLVEMTRKRVREPLDKLLTEP-AYPHGRPRRKTCATMANDLLRRIAREAQATPGRPL 456 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +VV +L + + I+++ + + Sbjct: 457 VARASVEVVDWLERGNPYLVERLRRKVPADISLIGEPAFPRERIDV 502 Score = 113 bits (283), Expect = 7e-23, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 12/80 (15%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIK-----------GNIYLAKVTR 49 M+ ++LI+ ETRV ++ D R EL E + +K GNI+L +V R Sbjct: 1 MSEEVLINV-GPGETRVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQR 59 Query: 50 VEPSLQAAFVDYGGNRHGFL 69 V P +QAAFV+ G R GFL Sbjct: 60 VLPGMQAAFVEVGLERAGFL 79 >gi|302545435|ref|ZP_07297777.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302463053|gb|EFL26146.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces himastatinicus ATCC 53653] Length = 953 Score = 220 bits (559), Expect = 7e-55, Method: Composition-based stats. Identities = 121/334 (36%), Positives = 198/334 (59%), Gaps = 4/334 (1%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 342 NGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 400 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + VP GVI+RTA ++ E+ RD + L W+ +++ A + A Sbjct: 401 DTERAR--LKQILKKIVPEDAGVIVRTAAEGASEDELARDVQRLQAQWEEIKKKAKSGNA 458 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+Y E ++ R +RD++ +D S++IVSGE ++ ++ + P ++++ Sbjct: 459 PTLLYGEPDMTVRVVRDIFNEDFSKVIVSGEDAWQTIHGYVSHVAPDLVDRLQKWNSDVD 518 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403 +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T + +E+T + N Sbjct: 519 VFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNN 578 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV +++ G Sbjct: 579 LEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 638 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 L++M+R+R+ +LES ++ C +C G G I Sbjct: 639 LVQMTRKRVGQGLLESFSESCVHCNGRGVIVHMD 672 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ + E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 262 ERVMVVRQNGERTQIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 321 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 322 KGRNAVLYAGEV 333 >gi|307152015|ref|YP_003887399.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7822] gi|306982243|gb|ADN14124.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7822] Length = 654 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 135/555 (24%), Positives = 237/555 (42%), Gaps = 34/555 (6%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T ++L GRY VLMP +G +SR+I N +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIRNEDER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ +++ A ++ P L+ Sbjct: 141 SRLRA-LAILVKPAGMGLLVRTEAEGKAEEAIMEDLEVLQKQWELIQQQAASTRPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + I+R +RD+Y D++ I+V + K + + + + + + Sbjct: 200 RDDDFIQRVLRDMYTSDVNRIVVDTPASVKRVKQHLIGWSGGRSPEGVVIDYHRESQSVL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G+IVVDFIDM+ +++ + + ++LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVIVVDFIDMDSRRDQLKLLEHFNKALKADKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E + C C G G++ + + + + Sbjct: 380 LTRKRQGKNIYELFGQPCPTCSGLGHLAHLPGESDVV-----------SLETLSFSPPPT 428 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 V R + + G ++ + Q Sbjct: 429 VPAVTHAP----------RLPEKPIIEPEPSFDANY---DDGDETSQQMDLLYHPNYQDQ 475 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + + ++ + ++ L I + + E RR R R + + Sbjct: 476 GLAAARRRRRRRSNDLIKEEGGTKILPGIPERELDLEYEPPREDRRERGVRNQRRDEMPL 535 Query: 647 AGVVSDVSSIQNVIDDSFDMY-----MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 V ++S ++ + + ++ I VS P Sbjct: 536 ERVSVEMSDLEQDVYSEMGISPLILLEREFKDPRTVIVSVKPKDKETREIREITSVSEPV 595 Query: 702 MESSNSSSDPIVKKT 716 + S + S+ +T Sbjct: 596 VNSVSPISEIAQPET 610 Score = 76.2 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I E+ + + D +++EL Q G+IYL V V P + AAF Sbjct: 1 MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVGDIYLGLVENVIPGIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 V+ G R+GF+ ++ P Sbjct: 54 VNIGDAERNGFIHVTDLGP 72 >gi|88855100|ref|ZP_01129765.1| ribonuclease G [marine actinobacterium PHSC20C1] gi|88815628|gb|EAR25485.1| ribonuclease G [marine actinobacterium PHSC20C1] Length = 944 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 131/562 (23%), Positives = 244/562 (43%), Gaps = 11/562 (1%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I+ +K +LVQ+ K+ G+KGA +T+ +SL GRY V +PN S ISRK+ Sbjct: 371 PQARRIELALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMSG-ISRKLP 429 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + K +P +GVI+RTA T+ ++ D L W ++ A Sbjct: 430 DTERSRLKK--ILKGVLPENVGVIVRTAAEGATEEQLTLDVSRLTNQWADISAQVDKVQA 487 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L++ E +L+ + IRD++ +D ++++ G+ + +++++ + P ++ +E Sbjct: 488 PALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARKTIENYVRSVAPDLLDRLQPHESTVD 547 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403 F + Q++ +V LPS G ++I++TEA+ +DVN+G+ +E+T + N Sbjct: 548 SFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNN 607 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 +EAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +DR + QV +++ G Sbjct: 608 VEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLG 667 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L++M+R+++ +LE+ ++ C C G G + V R Q + + Sbjct: 668 LVQMTRKKLGLGLLETFSENCEVCAGRGVVVHHDPVTKH--RQQPTQNEQAGSGRRGRNR 725 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 + + + G+ N H + Sbjct: 726 GGNGNGSGNGSGNGGNSGGGNSGSGANGGSQNQQSNSPS-KSSNGASSNGAGNGTHAITE 784 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 D + V + + E + S +S ++ ++ A Sbjct: 785 DVRNALARVAASTVLSATEHPAEERVPAAEAPETTQKSGKSAKSDAPQKSDAPQKTAAPQ 844 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 +G S+ + + + S + + + ++ + P +ST + E Sbjct: 845 KSSSGSKSNTAKAEKKANTSATQTADVVEGAAETAVAIFDIPISKTSQAA-PKISTQDAE 903 Query: 704 S---SNSSSDPIVKKTRWWKRR 722 S + P K+ K R Sbjct: 904 QILGSVLEALPEPKQPGHGKAR 925 Score = 93.9 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 ++ VL D + E + GN+YL +V V PS++AAFVD G R+ L E+ Sbjct: 298 IQIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEV 357 Query: 75 HPD 77 D Sbjct: 358 DWD 360 >gi|310779299|ref|YP_003967632.1| RNAse G [Ilyobacter polytropus DSM 2926] gi|309748622|gb|ADO83284.1| RNAse G [Ilyobacter polytropus DSM 2926] Length = 488 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 133/493 (26%), Positives = 245/493 (49%), Gaps = 15/493 (3%) Query: 74 IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133 I+ D +Q R ALL++ + + E + G++ ++ A Sbjct: 6 INVDDFQT----RAALLEDDKLTEFFIERSDEVKVTGNIYKGRVANVLPGMESAFLDIGL 61 Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193 E+ + + V+D++ + I++++ ++VQI+K+ RG KG Sbjct: 62 EKNAFL--------YVKDLREFEEMYLDGIENSDRPIEDLLNVGDEVVVQILKDPRGTKG 113 Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253 A VTT+ ++ G+Y VLMPN + + ++ E P MG I+RTA Sbjct: 114 ARVTTHYTIPGKYLVLMPNNDYVAISQKIKNDKERKR--LEELLKEIKPDNMGFIIRTAA 171 Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313 + ++ +R+ EYL++ W ++ S ++Y + L+K +RD++ +I E+++ Sbjct: 172 EGKNELHFEREVEYLVKKWHDIERKISTSKPGDIIYRDNELVKTVLRDIFSSNIEELVID 231 Query: 314 GEKGYREAKDFMKLLMPSYARIV-RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVI 372 EK Y E D++ S + + Y + P+F G+ QLD + V L GY++ Sbjct: 232 NEKKYWEIIDYINAFSESSMKTKIKLYNENLPVFETYGVNSQLDKALKEVVWLDCGGYLV 291 Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 I +TEALVSID+N+G++T +EDT +TN+EAA+EI RQLRLR+++G+I++DFIDM+ Sbjct: 292 IQRTEALVSIDINTGKNTGRMNLEDTVFETNIEAAKEIPRQLRLRNMSGIIIIDFIDMKH 351 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 +++ V + L+E LKKDR + + ++ GL+EM+R+R+ + + C +C G G Sbjct: 352 EEDKLKVTEVLEEHLKKDRIKNNIIHFTDLGLIEMTRKRVGKPLSHYYQEECVHCNGTGK 411 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 I+S+ SV ++ ++ + + + ++ + I Y G V Sbjct: 412 IKSKDSVINEVITEIKIVSDEKDISTVRLKISKELNGFFKGIYDEFIKVYLKSKGKFFKV 471 Query: 553 VIGIELADKLFYI 565 + + + I Sbjct: 472 EVDPLKDNYDYEI 484 Score = 98.5 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+++I+ +TR +L D+++ E E + ++ GNIY +V V P +++AF+D G Sbjct: 2 NQIIINVDD-FQTRAALLEDDKLTEFFIERSDEVKVTGNIYKGRVANVLPGMESAFLDIG 60 Query: 63 GNRHGFLPFLEI 74 ++ FL ++ Sbjct: 61 LEKNAFLYVKDL 72 >gi|229496574|ref|ZP_04390288.1| ribonuclease, Rne/Rng family [Porphyromonas endodontalis ATCC 35406] gi|229316471|gb|EEN82390.1| ribonuclease, Rne/Rng family [Porphyromonas endodontalis ATCC 35406] Length = 522 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 213/405 (52%), Gaps = 7/405 (1%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 R+ I+ V+ Q LLVQ+ KE KGA ++T LSLAGR VL P ++S+KI+ Sbjct: 106 PREGKIENVLSAGQTLLVQVTKEPISTKGARLSTTLSLAGRSMVLFPF-GNKVSVSKKIS 164 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + K LK + + ++ G V++RT+ + +E+ + L+ W++ + + A Sbjct: 165 SKEEGKRLKSLIQSIKPE-GFTVVIRTSAIGKKALELHAELNRLVNRWNDSVKKLPRAKA 223 Query: 285 PHLVYEEGNLIKRAIRDLYCK-DISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 P L+ E N +RD + +EI ++ + Y KD++ + P IV Y++ Sbjct: 224 PALICAEPNRALSLLRDTFSAATYTEIAINDKDMYGAIKDYISTIAPDSTDIVSYYDNSK 283 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQT 402 PIF + Q+ SL VT Y+II +TEA+ +DVNSG +R+ EDTAL Sbjct: 284 PIFDHYDVTRQVKSLFGRTVTYKGGAYLIIEKTEAMHVVDVNSGNRSRKSNAQEDTALDV 343 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NL AAEE+ARQLRLRD+ G+IVVDFIDM + ++ + + ++ +K DRA+ + +S F Sbjct: 344 NLSAAEELARQLRLRDMGGIIVVDFIDMNDPQHCKQLYDHMRALMKTDRAKHNILPLSKF 403 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 +++++RQR+R + E T + C C G G +++ + I + V + + + +H Sbjct: 404 CVMQITRQRVREATTEHTEETCPTCMGTGKMQASILLVEQIEKKVADLIENHNVRQCNLH 463 Query: 523 THSDVVLYLLNQKR---ATIVEYEARFGVSINVVIGIELADKLFY 564 + V YL + + + ++ + +V +A + Sbjct: 464 VNPYVAAYLQRHEIFSPSEFSRWRKKYSRGLKLVEDQSIAFLDYK 508 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + +L D ++ E E + G+IYL KV ++ P L AAFVD Sbjct: 1 MDSQLIIDV-RPKEVAMALLEDRKLVEFQREKSNSSCAVGDIYLGKVRKIMPGLNAAFVD 59 Query: 61 YGGNRHGFLPFLEIH 75 G + FL + ++ Sbjct: 60 IGSGQDAFLHYYDLG 74 >gi|320531422|ref|ZP_08032387.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136361|gb|EFW28344.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 832 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 135/580 (23%), Positives = 240/580 (41%), Gaps = 24/580 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ + + +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 248 GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 307 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + K VP GVI+RTA T+ ++ D E L+ W+ Sbjct: 308 TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGATQEQLTADVERLVNQWE 364 Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + + AP L+ E L R IRD++ +D +++VSG+ + ++ + Sbjct: 365 AIDKKASSIMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLVVSGDNTWSTISQYIDDV 424 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P + + + P +F ++ QL +V LPS G ++I++TEA+ IDVN+GR Sbjct: 425 SPDLSERLEHWVGPEDVFTAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 484 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L Sbjct: 485 FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 544 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 +DR R QV +++ GL++M+R+R+ ++E+ + C +CKG G+I V + Sbjct: 545 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQ-QVDM 603 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-----------FGVSINVVIGI 556 + + + +K A E + G + Sbjct: 604 SASASRGGGRSRGRKNREEQAAAGGGRKEAKKDSQETKGSKSSGHGKGSAGRDVAGSPES 663 Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 D+ +G+ Q + + + + ++ +E Sbjct: 664 GADDEARAAVRGALAQIAAAAEQAHNAQIEGQGSHERQGDAEGSATGVSGSVNDVVETEG 723 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + + R R+ V + D + Sbjct: 724 PASGQDAQVPPVEDEPVKTRSRKAT---EKKSSKKAVEKSGDKADKKPEKKAGGKPEKKT 780 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 G + S P P + ++ + Sbjct: 781 AKKSEGPAEPQPDEAPSEPAGEKPARRTRRRATAKSTAPS 820 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ VL D + E + + GN+Y+ +V V PS++AAFVD G R+ L E++ Sbjct: 192 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 251 Query: 76 PD 77 D Sbjct: 252 WD 253 >gi|166364261|ref|YP_001656534.1| ribonuclease E [Microcystis aeruginosa NIES-843] gi|166086634|dbj|BAG01342.1| ribonuclease E [Microcystis aeruginosa NIES-843] Length = 719 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 135/477 (28%), Positives = 226/477 (47%), Gaps = 14/477 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T ++L GRY VLMPN +G +SR+I + +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGNKGPRLTGNVTLPGRYLVLMPN-GRGVNLSRRIRSEDER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E+L + W++++++A+++ AP L+ Sbjct: 141 SRLRA-LAILVKPAGMGLLVRTEAEGKAEEAIIEDLEFLQKQWESIQQMAVSTRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ---YEDPHPIF 346 + + I+R +RD+Y D++ I+V + K + A + + PI Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPVAVKRVKQQLTNWGGGKALEGVYIDSHRETQPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G++VVDFIDM+ +++ + + ++LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVVVVDFIDMDSRRDQLKLLELFNKALKSDKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E K C +C G G++ +I I+ T++ Sbjct: 380 LTRKRQGKNIYELFGKTCDHCGGLGHLAHLPGEGNAIALETPTVSRAEKETFIVAPTNTK 439 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 V L ++ ++ E V Q + + S+ Sbjct: 440 V---LPDKSAPSVAAAEPYLEVFSEFEAEENAQGMDLSFHPNYQEQVNNSRRRRRRRPSE 496 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 ++ E + I E + EE + +R A + Sbjct: 497 LLLKEERSEKASTNGVNNEI------EPESEPQRFEEKRERPARLSKRGEDASAAKN 547 Score = 71.9 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I E+ + + D +++EL Q +IYL V V P + AAF Sbjct: 1 MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVADIYLGLVENVIPGIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 V+ G R+GF+ ++ P Sbjct: 54 VNIGDAERNGFIHVTDLGP 72 >gi|254382749|ref|ZP_04998106.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341651|gb|EDX22617.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 923 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 125/399 (31%), Positives = 219/399 (54%), Gaps = 8/399 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 197 EDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG 256 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 257 MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 315 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL--AL 280 + + + + VP GVI+RTA ++ E++RD E L W+++++ + Sbjct: 316 LPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQI 373 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 ++ +P L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P A + ++ Sbjct: 374 STSSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWETIHGYVNHVAPDLADRLSRWT 433 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTA 399 +F I+ QL +V LPS G ++I++TEA++ IDVN+G+ T + +E+T Sbjct: 434 SEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGKFTGQGGNLEETV 493 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 + NLEAAEEI RQLRLRDL G++V+DFIDM + N V +++ E L +DR + QV + Sbjct: 494 TRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEV 553 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++ GL++M+R+R+ +LES ++ C +C G G I + Sbjct: 554 TSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 592 Score = 92.0 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 34/63 (53%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71 E T++ VL DN + E E GN+YL KV V PS++AAF+D G R+ L Sbjct: 188 GERTQIGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYA 247 Query: 72 LEI 74 E+ Sbjct: 248 GEV 250 >gi|15615576|ref|NP_243880.1| cytosolic axial filament protein [Bacillus halodurans C-125] gi|10175636|dbj|BAB06733.1| ribonuclease G (cytosolic axial filament protein) [Bacillus halodurans C-125] Length = 500 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 118/416 (28%), Positives = 215/416 (51%), Gaps = 4/416 (0%) Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 +++ + + K++ I + ++ + LLVQ+ KE G KG +T ++ GRY V Sbjct: 70 DELLSFHLSNEEEDEKKKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGVVAFPGRYVVY 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MP + + E + L G+I+RTA + E +++ + Sbjct: 130 MPQAGYVGVSKKIFPEEERERWRSEWEQLLLN--DEGLIIRTACKKEVRHEAEQEILFFR 187 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 ++W+ +++ + AP L+Y+ LI+R +RD ++ EI+V + Y K + Sbjct: 188 QMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEYHFIKQLLASY- 246 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P+ V Y+ +F +E +++ + +V L + GY++++ EAL IDVNSG+ Sbjct: 247 PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAEALTVIDVNSGKF 306 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + ++DT ++ N+EAA+EIA QLRLRD++G+I++DFIDM+ +++ + V L+++LK Sbjct: 307 IGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQLVLHTLEQALKT 366 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DR + V ++ GL+EM+R+++R S+ S +K C C+G G + S + A I R + E Sbjct: 367 DRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDEAQAFKIERELWE 426 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A I++ S + L Q + E G I V L ++ + I Sbjct: 427 Y-RGSDAEAIVLELPSHIAPVLFGQDGGHLKRLETAIGSRILAVPKKTLKEEQYEI 481 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 14/119 (11%) Query: 3 NKMLID-ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +L + A+ E R V+ + +V EL E +++I GN+Y +V V P +QA FVD Sbjct: 2 KSILFNMATR--ERRAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDI 59 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++GFL E+ L + ++D V G+ + Sbjct: 60 GREKNGFLYRDELLS-----------FHLSNEEEDEKKKRNISDFVQEGEELLVQVTKE 107 >gi|315604383|ref|ZP_07879449.1| ribonuclease G [Actinomyces sp. oral taxon 180 str. F0310] gi|315314089|gb|EFU62140.1| ribonuclease G [Actinomyces sp. oral taxon 180 str. F0310] Length = 924 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 159/570 (27%), Positives = 253/570 (44%), Gaps = 39/570 (6%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 293 GEVNWDAVGMEGKPRRIEAALKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPGG 352 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K VPAG GVI+RTA T+ +I+ D L R W+ Sbjct: 353 SMMG-ISRKLPDKERARLKK--ILKAVVPAGSGVIVRTAAEGATEAQIRDDVARLTRQWE 409 Query: 274 NVRELALNSVA-PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + ++ P L+ E L R +RD++ +D +++++ G Y KD++ L P Sbjct: 410 EIDKKRSSTKNAPVLLRGEPELAVRVVRDIFNEDFTKLVIQGRNTYATVKDYVDELSPEL 469 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + V Q+ +F I+ QL +V LPS G +II++TEA+ IDVN+G+ Sbjct: 470 SDRVEQWVGTEDVFHAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKFIGA 529 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++++DF+DM + N V ++L E L +DR Sbjct: 530 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 589 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 R QV I++ GL++M+R+R+ ++E+ + C C+G G+I V S S + Sbjct: 590 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSSPCEACEGRGFIVHHHPVEASGADSSSKGA 649 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 QKRA EA GV K + Sbjct: 650 KSAKKS----------------QKRAEPRRIEA--GV-------EHERAKEALSAIAAAS 684 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + A + +D + + S D ++ S+ S KR Sbjct: 685 SRKDDDAPSEAPVPAAKGTAQAAAREVEDASSATGTEQASAPDQAESKASDASAQEATKR 744 Query: 632 RRRRRRRRPAT---------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 RRRRR AT D D ++ + +N +D E + Sbjct: 745 PRRRRRVAEATPVPDLPVHIDLPDPVETAEQAPAKNAVDIELPERQEKAPANRRRASHKA 804 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 A + + P P +S S+ Sbjct: 805 ATAASGEPSSAPSPAEPPAHPASQESAPRN 834 Score = 97.0 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ +L D + E + + GNIYL +V V PS++AAFVD G R+ L E++ Sbjct: 237 QIALLEDGLLVEHYVARRTQSSMVGNIYLGRVQNVLPSMEAAFVDVGRGRNAVLYAGEVN 296 Query: 76 PD 77 D Sbjct: 297 WD 298 >gi|315504188|ref|YP_004083075.1| ribonuclease, rne/rng family [Micromonospora sp. L5] gi|315410807|gb|ADU08924.1| ribonuclease, Rne/Rng family [Micromonospora sp. L5] Length = 1089 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 128/461 (27%), Positives = 220/461 (47%), Gaps = 24/461 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ +++ +LVQ+ K+ G+KGA +T++++L+GR+ V +PN Sbjct: 602 GEVNWDATGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPN- 660 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ L+++ + L G GVI+RTA ++ E+ RD + L W+ Sbjct: 661 GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 718 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A AP L+YEE +L+ R +RDL+ +D E+++ GE Y + ++ + P Sbjct: 719 DIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLV 778 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +R++ +F I+ Q+ +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 779 ARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSG 838 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR Sbjct: 839 GNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 898 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI--------- 503 + QV I++ GL++M+R+RI + +LE+ ++ C CKG G I V Sbjct: 899 KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPVPEKPRGGAGEKVK 958 Query: 504 ----------LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 + A V + E R + Sbjct: 959 AVASAVAAPAEEKGRRRGRKAAAEKPAVEAAPEQPSAQPQAVTEAPAAPE-RTVAEVVET 1017 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 + + + + A + Sbjct: 1018 DDDYYDTQGYDLSRFETDTPAAPAIADSQEGDSARLAAADD 1058 Score = 101 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 545 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 604 Query: 75 HPD 77 + D Sbjct: 605 NWD 607 Score = 37.6 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 1/151 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 G + A + + A + E+ RKR Sbjct: 3 ENEPEGGERTGAEPAGTTADSATTASGSAASATSAGAGGATTEGTVEGVAETKPPARKRA 62 Query: 633 RRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 RR+ + DA V + + + ++ + + Sbjct: 63 SRRKAAPLNQPEQTDAPVEASTTVTGSGESPQAEVLAPVAGELDTAPKTTRRRRKATPAK 122 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 PV+ +E+++ P VK TR +R+ Sbjct: 123 AVEEPVAAAGVEAASEEVVPPVKVTRTRRRK 153 >gi|309810421|ref|ZP_07704252.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185] gi|308435618|gb|EFP59419.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185] Length = 784 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 218/413 (52%), Gaps = 6/413 (1%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 +T + D V + + + + S+ +A D+ V Sbjct: 200 EQEGRTQIGVLEDGVLAEHYVSRQEQASSMAGNVYLGRVQNVLPSMEAAFVDIGRGRNAV 259 Query: 153 --KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 G D + I+ +K + +LVQ+ K+ G+KGA +T+ +SL GR+ V + Sbjct: 260 LYAGEVNWDAAGLDNQPKRIEHALKAGESVLVQVTKDPIGHKGARLTSQISLPGRFVVFV 319 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 P S ISRK+ + + + VPA GVI+RTA ++ E++ D E LM+ Sbjct: 320 PGNSMTG-ISRKLPDTERARLKR--ILKEVVPADAGVIVRTAAEGASEEELRADVERLMK 376 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +W+ ++ A + AP L++ E +L R IRD++ +D ++++VSGE+ + E ++ + P Sbjct: 377 MWERIQAKAETANAPSLLHGEPDLTVRVIRDVFNEDFAKMVVSGERAWNEVHTYISEVAP 436 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++E +F I+ QL +V LPS G ++I++TEA+ +DVN+G+ Sbjct: 437 DLVERLEKWEGDEDVFAEHRIDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFV 496 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 +E+T + N+EAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L + Sbjct: 497 GSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRELVVRRLLECLGR 556 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 DR + QV +++ GL++M+R+R+ + ++E ++ C C+G G + V Sbjct: 557 DRTKHQVAEVTSLGLVQMTRKRVGAGLVEVFSETCESCQGRGIVIHDHPVENR 609 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 15 TRVVVLRDNRVEELDFESEHK-KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 T++ VL D + E + + + GN+YL +V V PS++AAFVD G R+ L E Sbjct: 205 TQIGVLEDGVLAEHYVSRQEQASSMAGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGE 264 Query: 74 IHPD 77 ++ D Sbjct: 265 VNWD 268 >gi|239987588|ref|ZP_04708252.1| hypothetical protein SrosN1_09814 [Streptomyces roseosporus NRRL 11379] Length = 692 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 217/399 (54%), Gaps = 9/399 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 188 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 247 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 248 MAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 306 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN- 281 + + + + VP GVI+RTA ++ E++RD E L + W+++++ A Sbjct: 307 LPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAKGT 364 Query: 282 --SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 S AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P + ++ Sbjct: 365 SGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRW 424 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDT 398 +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T + +E+T Sbjct: 425 TSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEET 484 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 + NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L +DR + QV Sbjct: 485 VTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAE 544 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 +++ GL++M+R+R+ +LES ++ C +C G G I Sbjct: 545 VTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 583 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ + E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 170 ERVMVVRQNGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 229 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 230 KGRNAVLYAGEV 241 >gi|167630753|ref|YP_001681252.1| ribonuclease, rne/rng family [Heliobacterium modesticaldum Ice1] gi|167593493|gb|ABZ85241.1| ribonuclease, rne/rng family [Heliobacterium modesticaldum Ice1] Length = 418 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 115/328 (35%), Positives = 195/328 (59%), Gaps = 3/328 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I +++K Q + VQ++KE G KG VT +L+L GR+ VL+P+ +G +SR+I +P +R Sbjct: 87 IGDILKPGQEVTVQVLKEGIGGKGPRVTCHLTLPGRWVVLLPDGDQGG-VSRRIEDPAER 145 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L+++A L P GMG+I+RT A ++ E+ D L + W ++E A AP L+ Sbjct: 146 ERLRKLADRLRQP-GMGLIVRTTAAGASEEELAADVARLGQRWARIQEKASRRPAPCLIE 204 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 G+L++R +RD + +I V+ Y ++ +P+ +R E+ + Sbjct: 205 SSGDLVERLLRDRIDDGVEQIRVNDRDVYSRMWEWAGENLPALRPRLRL-EEGRDFWAEQ 263 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + +++ + +V L S GY++I +TEAL IDVN+GR T +E+T QTN+EAA+E Sbjct: 264 NLHSEIEKALRPKVWLKSGGYLVIEETEALTVIDVNTGRFTGTVNLEETIRQTNIEAAQE 323 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 ++RQLRLR++ G+IV+DFIDM + ++ V + L+ L +D+AR V ++ GL+EM+R Sbjct: 324 VSRQLRLREIGGIIVIDFIDMRDDRHRAEVLETLEAHLARDKARTSVLGLTALGLVEMTR 383 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQS 497 +++R S+ T C C+G G + Sbjct: 384 KKVRQSLGALLTVPCECCEGRGRVVKGE 411 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L+ E T+V VL ++R+ E+ +E + + GNIY +V V P +QAAFVD Sbjct: 1 MNKTVLVQV-DKEWTKVAVLEEDRLVEVHWEQNDRGAMVGNIYRGRVENVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLE 73 G R+ FL + Sbjct: 60 IGWERNAFLVLAD 72 >gi|148272667|ref|YP_001222228.1| putative ribonuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830597|emb|CAN01533.1| putative ribonuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1006 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 129/559 (23%), Positives = 236/559 (42%), Gaps = 9/559 (1%) Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 I+ +K +LVQ+ K+ G+KGA +T+ +SL GRY V +PN S ISRK+ + Sbjct: 434 RRIEVALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNG-ISRKLPDTE 492 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 + LK+ + + +GVI+RTA T+ ++K D E L W + + AP L Sbjct: 493 RAR-LKKTLKEVLPE-NVGVIVRTAAEGATEEQLKLDVERLTSQWAEISRQVEKAQAPAL 550 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 ++ E +L+ + IRD++ +D E+++ G + +++ + P V+ Y F Sbjct: 551 LHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQTYSGEKDSFD 610 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEA 406 + Q++ +V LPS G ++I++TEA+ +DVN+G+ +E+T + NLEA Sbjct: 611 HHRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEA 670 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E L +DR + QV +++ GL++ Sbjct: 671 AEEIVRQMRLRDIGGIIVVDFIDMVLETNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQ 730 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+++ +LES ++ C C G G I + + + +Q + Sbjct: 731 MTRKKLGLGLLESFSENCETCAGRGIIIHHDPLMAH--KQTPQEPVQGQGRRRGGKGQQE 788 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY--IEKGSPVQALVNTGHKVGSD 584 + K + + Sbjct: 789 HGNGSGGNGGGRGNGGGQAQQQQRTPAASTHSITDDARSALAKIATSTIQTVNEAIDRVE 848 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 + D++ + Q E+ ++ + ++ + + R + PA + Sbjct: 849 DVVRTPDESTDAAVQPESAPLEEQTRGDRPRRSRGGRGRASSATVEAQDRSEPQAPAAEA 908 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH-GFTENYDVSIPPVSTPEME 703 A V + V + + I + + ++ Sbjct: 909 ASAPVEDPTPADAPVEEPALSTLEPREAIRLEPVQILDIPVASARTAPRRVSSADAEQLL 968 Query: 704 SSNSSSDPIVKKTRWWKRR 722 S + P K+ + R Sbjct: 969 GSVLDALPQPKEPGQGRSR 987 Score = 91.2 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 I S + ++ VL D + E + + GN+YL +V V PS++AAF+D G R+ Sbjct: 351 IVRSRDGKIQIGVLEDQVLVEHYVARADEASLIGNVYLGRVQNVLPSMEAAFIDIGRGRN 410 Query: 67 GFLPFLEI 74 L E+ Sbjct: 411 AVLYSGEV 418 >gi|296130124|ref|YP_003637374.1| ribonuclease, Rne/Rng family [Cellulomonas flavigena DSM 20109] gi|296021939|gb|ADG75175.1| ribonuclease, Rne/Rng family [Cellulomonas flavigena DSM 20109] Length = 1117 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 118/373 (31%), Positives = 201/373 (53%), Gaps = 14/373 (3%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY V +P ISRK+ + Sbjct: 586 QPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVYVPGGGMTG-ISRKLPD 644 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK+I R L GVI+RTA ++ E++ D L W+ + + + AP Sbjct: 645 TERSR-LKKILRDLVPD-SAGVIVRTAAEGASEEELRADVARLQGQWEAIEKKRRTANAP 702 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+ E ++ R +RD++ D S ++V G+ + ++ L P A V ++ + Sbjct: 703 ALLQGEPDMAIRVVRDIFNDDFSSLVVQGDDAWSTISTYVGELAPDLAARVEKWTGTQDV 762 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNL 404 F ++ QL +V LPS G ++I++TEA+ +DVN+G+ T +E+T + NL Sbjct: 763 FSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGAGGTLEETVTRNNL 822 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR + QV +++ GL Sbjct: 823 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 882 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYI----------RSQSSVALSILRSVEEYLLQY 514 ++M+R+R+ ++E+ ++ C +C G G+I R + + + + Sbjct: 883 VQMTRKRVGQGLVEAFSETCEHCHGRGFIVHADPVGKGGRPEQHAPPAPEAGESKRSRRK 942 Query: 515 TAHNIIVHTHSDV 527 A H V Sbjct: 943 RAEASTAAVHPAV 955 Score = 99.3 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E ++ + + GN+YL +V V PS++AAFVD G R+ L E+ Sbjct: 516 TQIAVLEDGVLVEHYVSNQAQASMVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV 575 Query: 75 HPD 77 + D Sbjct: 576 NWD 578 >gi|325285939|ref|YP_004261729.1| ribonuclease, Rne/Rng family [Cellulophaga lytica DSM 7489] gi|324321393|gb|ADY28858.1| ribonuclease, Rne/Rng family [Cellulophaga lytica DSM 7489] Length = 516 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 241/566 (42%), Gaps = 62/566 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + LI S + +D ++ EL E ++ G D Sbjct: 1 MNKE-LIVRSGSNAVDFALTKDGKLIELHKEEDNNNFSVG-------------------D 40 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 FL + + Sbjct: 41 I------FLA------------------------KIRKPVTGLNAAFVDVGYEKDAFLHY 70 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ P + + + + D + + I +VIK+ Q L Sbjct: 71 HDLGPQLSSMLKFVKGASTGKLKDFSLKDFPFEKD--------IDKDGSINDVIKSNQSL 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQIVKE KG +++ LSLAGRY V++P + + ++S+KI + +++ LK + R ++ Sbjct: 123 LVQIVKEPISTKGPRISSELSLAGRYVVMVPFSDR-VSVSQKIESKEEKERLKRLVRSIK 181 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 G GVI+RT + E+ +D E L+ W + + + P V E N +R Sbjct: 182 PK-GFGVIIRTVAEGKKVAELDKDLENLLTKWTVMCKKLYKAPHPSKVLVELNRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D++ + I V Y E KD+++ + P IV+ YE PIF + GIE Q+ + Sbjct: 241 DVFNDTFTGIHVDDTTLYNEIKDYVQEIAPKKESIVKLYESSVPIFEKFGIERQIKTSFG 300 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 ++ Y+II TEAL IDVNSG RS + EDTAL+ N+ +A EIARQLRLRD+ Sbjct: 301 RTASMSKGAYLIIEHTEALHVIDVNSGNRSNKAKNQEDTALEVNMISATEIARQLRLRDM 360 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+IVVDFIDM + + + + L++ +K DRA+ ++ S FGL++++RQR+R Sbjct: 361 GGIIVVDFIDMGKPDHRKKLFDHLRDEMKDDRAKHKILPPSKFGLIQITRQRVRPERNIK 420 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRAT 538 T + + + + I +E+ L +++I+H H + YL ++ Sbjct: 421 TMEKNPSGLNGAEVEAPIVLIDKIKSDLEKLLNGPAKDNDVILHIHPFIAAYLTKGLQSI 480 Query: 539 IVEYEARFGVSINVVIGIELADKLFY 564 ++ + + V + Sbjct: 481 RFKWFMEYKKWVKVQPRDAYTYLEYR 506 >gi|159904165|ref|YP_001551509.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9211] gi|159889341|gb|ABX09555.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. MIT 9211] Length = 624 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 137/527 (25%), Positives = 243/527 (46%), Gaps = 13/527 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G+KG +T L+L GRY +L PN +G ISRK N + Sbjct: 82 INELLEPRQKVLVQVMKEPTGSKGPRLTGNLALPGRYLILQPN-GQGVNISRK-INSENE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++R+ + + D E L++ W+++++ + S P L+ Sbjct: 140 RNRLRALGVLIKPPGTGLLIRSEAKGINEELLITDLEALLKQWESIQQASEQSSPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 E + I R +RD +++ +IV G AK F+ + ++ P + Sbjct: 200 REEDFINRILRDHVSPELTSVIVETPGGVERAKGFLGVDSNIIVES---HDQPTNLLDHY 256 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 I + + V LPS GY+II TEAL IDVNSG TR +T L TN EAA E Sbjct: 257 KINKTIFESLKPRVELPSGGYIIIEPTEALTVIDVNSGSFTRSSNSRETVLWTNCEAAIE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDME +++ + + ++K D +R Q+ ++ GL+E++R Sbjct: 317 IARQLKLRNIGGVIIIDFIDMESRRDQLQLLEYFTSAIKNDSSRPQIAQLTELGLVELTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R ++ E +K CT C G G+ ++ I S L T + S Sbjct: 377 KRQGQNIYELFSKTCTTCNGLGHT-AEIPGKEEIQTSATIGGLIQTEDSSKKILPSK--E 433 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN----TGHKVGSDS 585 + K + + ++IN + ++ + P VN + S Sbjct: 434 VISKAKNPDLAQESESSTLAINSEANNQESESESTNPRQEPELIAVNMSPDEEYVFSSLG 493 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 P + ++ ++ + E ++I + + S ++RR+ + +T Sbjct: 494 LNPILLLETQPTNENLSVHVVRPGEDAKNILEEAKQQLSQNTNKRRRKTKNGASRSTKTT 553 Query: 646 -DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + ++ + + +D + + D N+ G+ E D Sbjct: 554 LENSLLVNNQEVITASEDEVLIDIAKEDTPNNMPENIGSVEELERVD 600 Score = 78.5 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++I E+ R+ +L D RV+EL G+IYL + V P + AAFV Sbjct: 1 MPQKVVI----AEQVRIAALLTDERVDELIV--AQGHYQIGDIYLGTIENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGASEKNGFIHVTDLGP 72 >gi|307330530|ref|ZP_07609672.1| ribonuclease, Rne/Rng family [Streptomyces violaceusniger Tu 4113] gi|306883865|gb|EFN14909.1| ribonuclease, Rne/Rng family [Streptomyces violaceusniger Tu 4113] Length = 991 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 120/334 (35%), Positives = 197/334 (58%), Gaps = 4/334 (1%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 389 NGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 447 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + VP GVI+RTA ++ E+ RD L W+ +++ + + A Sbjct: 448 DTERAR--LKQILKKIVPEDAGVIVRTAAEGASEDELSRDVARLQAQWEEIKKKSKSGNA 505 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P A ++++ Sbjct: 506 PSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLQRWTSDVD 565 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTN 403 +F I+ QL +V LPS G ++I++TEA++ IDVN+G+ T + +E+T + N Sbjct: 566 VFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVIDVNTGKFTGQGGNLEETVTRNN 625 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 LEAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV +++ G Sbjct: 626 LEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 685 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 L++M+R+R+ +LES ++ C +C G G I Sbjct: 686 LVQMTRKRVGQGLLESFSESCVHCNGRGVIVHMD 719 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ + + T++ VL D+ + E E GN+YL KV V PS++AAFVD G Sbjct: 309 ERVMVVRQNGDRTQIGVLEDDVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 368 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 369 KGRNAVLYAGEV 380 >gi|302869337|ref|YP_003837974.1| ribonuclease, Rne/Rng family [Micromonospora aurantiaca ATCC 27029] gi|302572196|gb|ADL48398.1| ribonuclease, Rne/Rng family [Micromonospora aurantiaca ATCC 27029] Length = 1092 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 128/460 (27%), Positives = 223/460 (48%), Gaps = 22/460 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ +++ +LVQ+ K+ G+KGA +T++++L+GR+ V +PN Sbjct: 605 GEVNWDATGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPN- 663 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ L+++ + L G GVI+RTA ++ E+ RD + L W+ Sbjct: 664 GNASGISRKLPDTERKR-LRDVLKKLVPD-GAGVIVRTAAEGASEDELARDVKRLQAQWE 721 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A AP L+YEE +L+ R +RDL+ +D E+++ GE Y + ++ + P Sbjct: 722 DIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLV 781 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +R++ +F I+ Q+ +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 782 ARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSG 841 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR Sbjct: 842 GNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 901 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI--------- 503 + QV I++ GL++M+R+RI + +LE+ ++ C CKG G I V Sbjct: 902 KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPVPEKPRGGAGEKVK 961 Query: 504 ------LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE---ARFGVSINVVI 554 EE + + + + + E R + Sbjct: 962 AVASAVAAPAEEKGRRRGRKAAAEKPAVEAAPEQPSAQPQAVTEATAAPERTVAEVVETD 1021 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 + + + + A + Sbjct: 1022 DDYYDTQGYDLSRFETDTPAAPAIADSQEGDSARLAAADD 1061 Score = 101 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 548 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 607 Query: 75 HPD 77 + D Sbjct: 608 NWD 610 Score = 37.6 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 1/151 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 G + A + + A + E+ RKR Sbjct: 3 ENEPEGGERTGAEPAGTTADSATTASGSAASATSAGAGGATTEGTVEGVAETKPPARKRA 62 Query: 633 RRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 RR+ + DA V + + + ++ + + Sbjct: 63 SRRKAAPLNQPEQTDAPVEASTTVTGSGESPQAEVLAPVAGELDTAPKTTRRRRKATPAK 122 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 PV+ +E+++ P VK TR +R+ Sbjct: 123 AVEEPVAAAGVEAASEEVVPPVKVTRTRRRK 153 >gi|325278966|ref|YP_004251508.1| ribonuclease, Rne/Rng family [Odoribacter splanchnicus DSM 20712] gi|324310775|gb|ADY31328.1| ribonuclease, Rne/Rng family [Odoribacter splanchnicus DSM 20712] Length = 514 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 120/404 (29%), Positives = 206/404 (50%), Gaps = 3/404 (0%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 + + I +++ Q + VQ+ KE KG +T+ LS+AGR VLMP K ++S Sbjct: 101 EPEIPKNGKIADILTVGQWVAVQVAKEPISTKGPRLTSELSIAGRNLVLMPFADK-VSVS 159 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 +KI +P +RK LK + ++ GVI+RT + + + L+ ++ + Sbjct: 160 QKIKSPEERKRLKRLIESIKPK-NYGVIVRTVAEGKKVAVFDSELKELVERFEMAFKHIR 218 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 P L+ E + +RD+ + V+ +E + F+ + P IV+ Sbjct: 219 EIEPPKLILGEIDRTSAILRDILNPSFENVYVNDITLSKEIRHFLTTIAPEKQDIVKYVS 278 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-A 399 PI G++ Q+ S V+ + Y+II TEA IDVNSG T+ ++T A Sbjct: 279 PEIPILDHFGVDKQIKSSLGKTVSFKNGAYLIIEHTEAFHVIDVNSGNRTKLGDDQETNA 338 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 L+ NL AAEE+ARQL+LRD+ G+IV+DFIDM++ +N + + K+KE ++ DRA+ + + Sbjct: 339 LEVNLAAAEEVARQLQLRDMGGIIVIDFIDMQKAENRQKLFDKMKECMEIDRAKHTILPL 398 Query: 460 SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNI 519 S FGL++++RQR+R ++ TT++C C G G + V I +E ++ + I Sbjct: 399 SKFGLMQITRQRVRPAMTVDTTELCPVCHGTGKAEAAILVIDKIEDELEFFVYEKKNKRI 458 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 I+ H V YL + ++ R+ +S+ +V + Sbjct: 459 ILKVHPFVGAYLKKGLLSMRRKWAFRYHISLKIVDVPSYYIYEY 502 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+++++ID +E + +LR+ ++ EL E + G+IYL KV ++ P L AAFV+ Sbjct: 1 MSSELVIDVK-ADEIVIALLREKKLIELTKEKTSMQFAVGDIYLGKVKKIMPGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDY 78 G + FL +L++ P + Sbjct: 60 VGYEKDAFLHYLDLSPQF 77 >gi|150025717|ref|YP_001296543.1| ribonuclease G [Flavobacterium psychrophilum JIP02/86] gi|149772258|emb|CAL43734.1| Ribonuclease G [Flavobacterium psychrophilum JIP02/86] Length = 514 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 119/577 (20%), Positives = 226/577 (39%), Gaps = 65/577 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S + +L+D ++ EL E E G+I++AK+ + L AAFV+ Sbjct: 1 MNKELII-RSSSDAVDFALLKDGKLIELHKEEETSNFQVGDIFIAKIRKPVAGLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G + FL + ++ P+ VT G + + S Sbjct: 60 VGFEKDAFLHYHDLGPN-------------------LASQMKFIKLVTTGKIKDFSLKSF 100 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + I T+ ++ + V G +Y + +R + Sbjct: 101 QFEKEIDKDGTITDVIAVNQSILVQVVKEPISTKGPRISSELSLAGRYIVLVPFSDRVSI 160 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I +E ++ + + G I R + + + + L Sbjct: 161 SQKIDSKEEKDRLKRLVQSIKPKGF-----------GVIVRTVAEGKKVAEIDKDLQNLM 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 ++ + + P V E N +R Sbjct: 210 DKW-----------------------------TSMCKRIPTAHHPSKVLGELNRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSGIEVQLDSLH 359 D++ S II+ E+ + E K++++ + PS +V+ Y+ F + IE Q+ + Sbjct: 241 DVFNDTFSGIIIDDEELFNETKEYIQQIAPSKESMVKLYQSKDTPIFEKYSIERQIKTSF 300 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 V++ Y+II TEA+ IDVNSG RS + EDTAL+ N+ AA E+ARQLRLRD Sbjct: 301 GKSVSMSKGAYLIIEHTEAMHVIDVNSGNRSNKATNQEDTALEVNMIAAAEVARQLRLRD 360 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+I VDFIDM N + + L+E + D+A+ ++ S FG+++++RQR+R V Sbjct: 361 MGGIICVDFIDMSNPDNRKVLFDFLREEMSDDKAKHKILPPSKFGIVQITRQRVRPEVNI 420 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 T + + I + + I +E + + ++++ H + YL+ + Sbjct: 421 ETREENPNNE-NSDIEAPILIIDRIASDLERIIKLHK--KVVLNVHPFIAAYLVKGYPSI 477 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++ + I ++ ++ + Sbjct: 478 RSKWFFEYKKWIKIIPRDSYTYLEYHFNDNQGKEIKD 514 >gi|159039391|ref|YP_001538644.1| ribonuclease [Salinispora arenicola CNS-205] gi|157918226|gb|ABV99653.1| ribonuclease, Rne/Rng family [Salinispora arenicola CNS-205] Length = 1058 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 135/465 (29%), Positives = 228/465 (49%), Gaps = 8/465 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ +K+ +LVQ+ K+ G+KGA +T++++L+GR+ V +P Sbjct: 578 GEVNWDATGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPG- 636 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + R+ L++ + L G GVI+RTA ++ E+ RD + L W+ Sbjct: 637 GNTSGISRKLPDNERRR-LRDALKKLVPE-GAGVIVRTAAEGASEDELARDVKRLQAQWE 694 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +++ A AP L+YEE +L+ R +RDL+ +D E+++ GE Y + ++ + P Sbjct: 695 DIQAKAGKGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDMVESYLSHVSPDLV 754 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +R++ +F I+ Q+ +V LPS G+++I++TEA+ +DVN+G+ T Sbjct: 755 ARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAG 814 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V ++L E L +DR Sbjct: 815 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRT 874 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + QV I++ GL++M+R+RI + +LE+ ++ C CKG G I V + Sbjct: 875 KHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIVHTEPVPEKPRTGGTGERV 934 Query: 513 QYTAHNIIVHTH---SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + A + + +VE E G + +Y G Sbjct: 935 KAVASAETGTAPRRRTRKGSVTAERTSVEVVEGERDAGTTDTPGAAPTTPGADYYDTMGY 994 Query: 570 PVQALVNT-GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + + P D D + E E Sbjct: 995 DLSRYETETPAAPSVAASQPGDDPARLAAPDDPDAVGGDDGEEPE 1039 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 521 TQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 580 Query: 75 HPD 77 + D Sbjct: 581 NWD 583 >gi|33241106|ref|NP_876048.1| ribonuclease G/E [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238636|gb|AAQ00701.1| Ribonucleases G/E [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 611 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 141/538 (26%), Positives = 246/538 (45%), Gaps = 21/538 (3%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ Q +LVQ++KE GNKG +T +SL GRY VL P T +G +SR N Sbjct: 82 INELLRPSQPVLVQVLKEPTGNKGPRLTGNISLPGRYLVLQP-TGQGVNVSR-QINTETE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N + L P G G+ +R+ A T+ I D E L++ W+ +++ + P L+ Sbjct: 140 RNRLKALGVLIKPPGTGLTVRSEAAEVTEELIIDDLENLLKKWELIQQTRDRANPPSLLS 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D+SE+IV + +AK F+ + V + + Sbjct: 200 RDEDFIHRVLRDNTNSDLSEVIVETTEASDKAKRFL--TPSNKNVTVECLSESVNLLQHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 I++ + + + V LPS GY+II TEAL IDVNSG +T L TN EAA E Sbjct: 258 QIDIAILNALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFAS-ANSSETVLWTNCEAAIE 316 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I+VDFIDM+ +++ + + ++K D +R ++ ++ GL+E++R Sbjct: 317 IARQLKLRNIGGIIIVDFIDMDSRRDQLQLLEYFTSAIKDDSSRPKISQLTELGLVELTR 376 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R ++ E +K C+ C G G+I S I S L + + + Sbjct: 377 KRQGQNIYELFSKECSACSGLGHI-SNIPQKNQIQPSALNLGLVESTPVLQNEVKLNNNN 435 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL--VNTGHKVGSDSQA 587 N + + + +S NV L I K ++ + + S Sbjct: 436 KSKNNDQNELSD---SINLSKNVNRDNNLDQP---IIKQEQIEIKMNEDEEYVFSSLGLN 489 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 P+ + + ++ + I K+ES + I N E+ + K+ + R + + + Sbjct: 490 PTLMLDNQTNHEN-LSIQIIKAESHKKITTNKTEEKQSSSEIKKEKGNSRVFSSLEEDEE 548 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 ++ D + ++ DS +N +E P S ++E + Sbjct: 549 SILDDSNKDNELVSDS------SKQDEINNQIETSVELINSQSTSIDPESSEQDLEET 600 Score = 72.3 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K++I E+ R+ +L D RV++L G+IYL + V+P + AAFV Sbjct: 1 MPQKIII----AEQERIAALLTDGRVDKLIV--AQCHYQIGDIYLGIIENVKPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GFL ++ P Sbjct: 55 NIGPSEKNGFLNVNDLGP 72 >gi|227494687|ref|ZP_03925003.1| ribonuclease E [Actinomyces coleocanis DSM 15436] gi|226831869|gb|EEH64252.1| ribonuclease E [Actinomyces coleocanis DSM 15436] Length = 819 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 138/569 (24%), Positives = 242/569 (42%), Gaps = 60/569 (10%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + R I++ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 251 GEVNWEAVGLAGRPRRIEQALKSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVP-A 309 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P + + VP GVI+RTA T+ +++ D L W+ Sbjct: 310 GQMTGISRKL--PERERTRLKKLLSKIVPKDYGVIVRTAAEGATEEQLRDDVTRLQAQWE 367 Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + P L+ E L R +RD++ +D + V GE+ ++ ++++ L P Sbjct: 368 EIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQTVQEYVDELAPDL 427 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 +R++ + +F I+ QL +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 428 RDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFIGS 487 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L +DR Sbjct: 488 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRDLVLRRLVECLGRDR 547 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYL 511 R QV I++ GL++M+R+R+ ++E+ + C C G G+I Q+ + R + Sbjct: 548 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFIVHQNP----VERDHTGHA 603 Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + + VV K + Sbjct: 604 IMPKT--LRQVQPETVVDPEAEAKHEEVR------------------------------- 630 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + A K+++ + VS + + +KR Sbjct: 631 ------------------SALSAIAAAAASAHASEEKNDNHSEGDKADVSTDKVELPQKR 672 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + R RR D + + + + DS ++ E GA T + Sbjct: 673 TKNERGRRGLKDRRNKQARNQMLDDAEALLDSIGSVLDAKAERKSGEAEVGAGESTVVAE 732 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + T ++ + K + Sbjct: 733 PVVSGKETVFTAETSVGAQRAPKHRGARR 761 Score = 92.7 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 38/75 (50%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + +I ++ VL D + E ++ + GNIYL +V V PS++AAFVD G Sbjct: 182 KREMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDLG 241 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ + Sbjct: 242 KGRNAVLYAGEVNWE 256 >gi|170077410|ref|YP_001734048.1| ribonuclease E [Synechococcus sp. PCC 7002] gi|169885079|gb|ACA98792.1| ribonuclease E [Synechococcus sp. PCC 7002] Length = 693 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 152/618 (24%), Positives = 256/618 (41%), Gaps = 34/618 (5%) Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167 I ++V I E I +A ++ ++ + P + ++ Sbjct: 19 EDQIQEIVVSTGAQQVGDIYLGIVENVIPGIDAAFVNIGDTEKNGFIHVSDLGPIRLRKN 78 Query: 168 YC-IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I E+++ +Q LVQ++KE GNKG +T ++L GRY VLMP SKG +SR+I++ Sbjct: 79 SSSITELLEPQQKALVQVMKEPTGNKGPRLTGNITLPGRYVVLMP-YSKGVNLSRRISSD 137 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +R L+ L P GMG+++RT + I D E L + W+ +++ A P Sbjct: 138 SERNRLRA-LAVLMKPPGMGLLVRTEAEGTDEEAIIEDLELLQKQWEAIQQQANYGRPPT 196 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPH 343 L+ + + I+R +RD+Y +++ I+V G + K + A + + + Sbjct: 197 LINRDDDFIQRVLRDMYSDEVNRIVVDSASGMKRVKSQLMNWEGGKAPDGLLIDHHREKQ 256 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 I + + + V LPS GY+II TEAL IDVNSG T+ +T L TN Sbjct: 257 SILDYFRVNAAIREALKPRVELPSGGYIIIEPTEALTVIDVNSGSFTKSATARETVLWTN 316 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 EAA EIARQLRLR++ G+IVVDFIDM+ + + + + LK D+AR Q+ +S G Sbjct: 317 YEAATEIARQLRLRNIGGVIVVDFIDMDSRHDQLKLLEHFTSILKADKARPQIAQLSELG 376 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSVALSILRSVEEYLLQYTAHNI 519 L+E++R+R ++ E K C +C G G++ + V L L + LQ A Sbjct: 377 LVELTRKRQGQNIYELFGKPCAHCNGLGHLVHLPGEEEPVPLQ-LNILSSLSLQGGARTP 435 Query: 520 IVHTHSDVVLYLLNQKR---ATIVEYEARFGVSINVVIGIE--------LADKLFYIEKG 568 L +R + +R S + G + + + Sbjct: 436 GESRPV-----LSGGRRGTTSHGRRITSRVARSKLINAGNTPAAEPLNLVHHPDYQEQSS 490 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + S +K + D P E + ++++ Sbjct: 491 NNNNRRRRRRSPEVSSKPVLRDEKETQDNGGDRPSAETPTKE--KKETKTSSPQDNSNTS 548 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-----IDDSFDMYMEPSDITNHNLLENGA 683 + RR R R + + V +NV + + ++E Sbjct: 549 SRYDRRERSRYRRDEPKETVQVEMTEQEKNVYALIGVSPLVRLDAAGKKDPRSTIIEIVR 608 Query: 684 HGFTENYDVSIPPVSTPE 701 G + D + V+ E Sbjct: 609 PGSAKETDATSEKVTPVE 626 Score = 76.9 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I E+ ++ + D +++E+ Q G+IYL V V P + AAF Sbjct: 1 MPKQIII----AEQHQIAAVFWED-QIQEIVV--STGAQQVGDIYLGIVENVIPGIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 V+ G ++GF+ ++ P Sbjct: 54 VNIGDTEKNGFIHVSDLGP 72 >gi|291008538|ref|ZP_06566511.1| ribonuclease [Saccharopolyspora erythraea NRRL 2338] Length = 685 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 140/553 (25%), Positives = 241/553 (43%), Gaps = 34/553 (6%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + +LVQ+ K+ G+KGA +TT +SL GR+ V +P Sbjct: 131 GEVDWDAAGLAGKARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPGG 190 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ + VP GVI+RTA ++ + RD L W+ Sbjct: 191 G-ATGISRKLPDNERKR--LKEILKRIVPENAGVIIRTASEGTSEEALDRDVRRLQAQWE 247 Query: 274 NVREL--ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 ++E + + AP L+YEE +L+ + +RDL+ +D S + V G + + + ++K + P Sbjct: 248 VIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWDTIEAYVKHVAPD 307 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 A + ++ + +F I Q+ +V LPS GY++I++TEA+ IDVN+G+ T Sbjct: 308 LAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTG 367 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +D Sbjct: 368 SGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRD 427 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL--------- 501 R R QV +++ GL++M+R+R+ + +LE+ + C +C+G G + S V Sbjct: 428 RTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTDPVTHAHTNGSGGG 487 Query: 502 ---SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN------- 551 + + ++ A E + + Sbjct: 488 GGGGRRNRNRGKSQEPETPVVEAAPAAEPEAKAEPAAEAPKPEKQEKPQKQEKAERKAAA 547 Query: 552 -----VVIG----IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 V A++ E+ PV+A + + + Sbjct: 548 AAEQPVRADKAPEPAKAEQPVEAERAEPVKATEPAPAPEAVEEPVAEQPEAAAPAAEPVR 607 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ Q +EES+ R RRR+ A V ++ + Sbjct: 608 ASQPEEAAPTPASQPEPAAEESSEPAVNGRARRRKVSRPAGSAGAPAAPVVVAVPAKPAE 667 Query: 663 SFDMYMEPSDITN 675 S + T Sbjct: 668 SSESQDNGVPSTP 680 Score = 96.6 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 + ++T++ VL DN + E S + GN+YL +V V PS++AAFVD G R+ L Sbjct: 70 NGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLY 129 Query: 71 FLEIHPD 77 E+ D Sbjct: 130 AGEVDWD 136 >gi|302519047|ref|ZP_07271389.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302427942|gb|EFK99757.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 1045 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 419 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 477 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + VP GVI+RTA ++ E++RD E L W+++++ A Sbjct: 478 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 535 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+Y E ++ R +RD++ +D ++++VSG++ + ++ + P + ++ Sbjct: 536 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 595 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 596 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 655 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 656 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 715 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 716 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 750 Score = 90.4 bits (222), Expect = 9e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D+ + E GN+YL KV V PS++AAF+D G Sbjct: 341 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 400 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 401 KGRNAVLYAGEV 412 >gi|312898778|ref|ZP_07758166.1| ribonuclease, Rne/Rng family [Megasphaera micronuciformis F0359] gi|310619940|gb|EFQ03512.1| ribonuclease, Rne/Rng family [Megasphaera micronuciformis F0359] Length = 479 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 142/479 (29%), Positives = 228/479 (47%), Gaps = 7/479 (1%) Query: 88 ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147 LL I + AV ++ D + + V I + ++ +A D+ Sbjct: 2 KLLVADVIPEETRMAVIENGKLTDYAVERNDEAHIVNHIYKGVIQNILPAMQAAFVDIGR 61 Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 ++ + P+ ++ Q I Q +LVQ+VK+E+ KGA VT +S+AGRY+ Sbjct: 62 K-KNAFLYLGDLFPRAATKEEIQQTHISVGQSVLVQVVKDEQPMKGAKVTANVSIAGRYA 120 Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267 VLMP + + +N P G+G+I+RT ++ E+ D Y Sbjct: 121 VLMPTVDYVGVSKKIQ--DEEERNRLRTIVSAVKPEGIGMIVRTVAKDVSEEELAADLHY 178 Query: 268 LMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327 L+R W+++R + P L+Y E +L+ R IRD D++ +IV + Y F Sbjct: 179 LLRTWESIRARYKTTRKPKLLYREADLLMRMIRDYCTDDVNTVIVDNKDAYERLSSFFSE 238 Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 R + YE P+F IE +L ++ +V LPS G +I + TEAL IDVNSG Sbjct: 239 DEIDRER-LILYEGEDPVFDYYHIEDELQNVMSRQVMLPSGGTLIFDHTEALTVIDVNSG 297 Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 + +E+T N EAA EIARQLRLRD+ G+I+VDFIDM + + L+ Sbjct: 298 KYVGNSTLEETLFHVNREAAVEIARQLRLRDIGGIILVDFIDMPRSDRRDELLRILQRET 357 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 DRARV V ++ L+E++R++ R S+ S CT C G G + S SV + I+R + Sbjct: 358 AADRARVHVFGMTALNLVEITRKKSRQSIHLSQFSPCTVCGGTGVLASPESVYIQIVRQL 417 Query: 508 EEYLLQYTAH-NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + +I++ H+DV+ ++KR E S+ ++F + Sbjct: 418 RHMMKVHPIKGDILISAHADVLALFKDKKRKE--SLERELNRSLYFEDSHHANREVFSV 474 >gi|254819897|ref|ZP_05224898.1| Rne [Mycobacterium intracellulare ATCC 13950] Length = 709 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 132/485 (27%), Positives = 223/485 (45%), Gaps = 55/485 (11%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 184 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 243 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W Sbjct: 244 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRNDVTRLQERWK 300 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A+ YEE +++ + IRDL+ +D + ++VSG++ + +++ + Sbjct: 301 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDEAWNTINEYVNSV 360 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE P F I+ QL +V LPS G ++I++TEA+ Sbjct: 361 APDLVSKLSKYEPPAGPDGSSGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 420 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +DVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 421 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 480 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 481 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHTDPV 540 Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 A S R E + V V ++ Sbjct: 541 DSAPSNGRKSESGGRRGRRKKNKAEEPV-VA------------------KVPVH------ 575 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 SP + + GS +QA S D + ++ + K+ ED+ D Sbjct: 576 -----------SPGEHPMFKAMAAGSSTQAASEDDESDEATEETSDEFDEKARRDEDVSD 624 Query: 618 NIVSE 622 + Sbjct: 625 ADQED 629 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 127 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 186 Query: 75 HPDYYQIPFSDRQ 87 + + + SDR+ Sbjct: 187 NWEAAGLGGSDRK 199 >gi|67922279|ref|ZP_00515792.1| Ribonuclease E and G [Crocosphaera watsonii WH 8501] gi|67855855|gb|EAM51101.1| Ribonuclease E and G [Crocosphaera watsonii WH 8501] Length = 678 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 132/561 (23%), Positives = 232/561 (41%), Gaps = 40/561 (7%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T +SL GRY VLMP+ KG +SR++ N +R Sbjct: 82 ITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYIVLMPH-GKGVNLSRRMRNDDER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W++++ A ++ AP L+ Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEGKAEEAIMEDLESLQKQWESIQVQATSTRAPSLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346 + + I++ +RD+Y D++ I+V + K + + Sbjct: 200 RDDDFIQKVLRDMYSADVNRIVVDNPNSVKRVKQHLMNWSGGRPPEGVLIDHHQESMSVL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAVREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G+I+VDFIDM+ +++ + + ++LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKVDKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS---------QSSVALSILRSVEEYLLQYTAH 517 ++R+R ++ E + C C G G++ SV+ + L Sbjct: 380 LTRKRQGKNIYELFGQPCPQCGGLGHLAHLPGESKLVALESVSNNPLPLPIPAPNAKPVE 439 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 S L ++ + E L + + N Sbjct: 440 KPSEANDSAWDSLLEDEDSDNPDQLEL-------------LHHPSYQ-------EQNNNA 479 Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 ++ + ++ + S+ + ++ E RR R R Sbjct: 480 TNRRRRRRPPTQAPNLVNKEKEETPV----PSKPVTNVAVKETEENKESSNENRRERVPR 535 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 D V +++ + + + P + + + + Sbjct: 536 HLRREDAPVERVSVEMTPTEQNVYALMGIS--PLVRVDQEFKDPKSVLVSVKSPEGFERK 593 Query: 698 STPEMESSNSSSDPIVKKTRW 718 + + ++ + Sbjct: 594 KVEKTPQKSKQTETATPSQKQ 614 Score = 70.0 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I E+ + + D +++EL Q +I+L V V P + AAF Sbjct: 1 MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 V+ G R+GF+ ++ P Sbjct: 54 VNIGDAERNGFIHVTDLGP 72 >gi|326330750|ref|ZP_08197053.1| ribonuclease, Rne/Rng family [Nocardioidaceae bacterium Broad-1] gi|325951455|gb|EGD43492.1| ribonuclease, Rne/Rng family [Nocardioidaceae bacterium Broad-1] Length = 624 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 145/563 (25%), Positives = 244/563 (43%), Gaps = 45/563 (7%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 K + I+ V+ + Q +LVQ+ K+ G+KGA +T+ +SLAGR+ V +P+ ISRK Sbjct: 93 KEGQPRKIESVLTSGQKVLVQVTKDPIGHKGARLTSQISLAGRFLVYVPD-GTTSGISRK 151 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + + + VP GVI+RTA + E+ RD E L W++ E Sbjct: 152 LPDTERNR--LKTLLKEIVPDTAGVIVRTAAEGAAEEELTRDVERLKARWED-IEKRAGG 208 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+Y E +L + +RDL+ +D +++++SG+ + KD+++ + P V +Y+ Sbjct: 209 NAPQLLYGEPDLTLKVVRDLFTEDFAKLVISGDSSWETVKDYVQSVAPDLEERVEKYDGE 268 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 F I+ Q+ +V LPS G +II++TEA+ +DVN+G+ T +E+T + Sbjct: 269 ADAFAAYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGGNLEETVTK 328 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +DR R QV +++ Sbjct: 329 NNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQVAEVTS 388 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++M+R+RI + +LE+ ++ C C G G + + V + + Sbjct: 389 LGLVQMTRKRIGTGLLEAFSENCDACGGRGLVIHEHPVEP------------GKSSGVAP 436 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 + E Q Sbjct: 437 DEPRSRRRGGRGGRGKGRDEI--------------------------GGEQRTEPVEESA 470 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + S A + DE E+ + + + R R RR + Sbjct: 471 RTPSPAEFAAMAGQTEKVDEPAAAAESVETPVETVPSEPETAEAPKVTTRTRSRRSKAVT 530 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 T+ ++ + ++ + + P T + A + P Sbjct: 531 TEEPTVAESTEPAETAQPVETAPEQVEAPKVTTRTRSRRSKASTPAPEPVEAETPAEPVA 590 Query: 702 MESSNSSSDPIVKK--TRWWKRR 722 + + ++P K TR RR Sbjct: 591 EAPAAAPAEPEAPKVTTRNRTRR 613 Score = 95.4 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E E + + GN+YL +V V PS++AAF+D G R+ L E+ Sbjct: 26 TQIAVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV 85 Query: 75 HP 76 + Sbjct: 86 NW 87 >gi|239941109|ref|ZP_04693046.1| hypothetical protein SrosN15_08946 [Streptomyces roseosporus NRRL 15998] gi|291444550|ref|ZP_06583940.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347497|gb|EFE74401.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 711 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 217/399 (54%), Gaps = 9/399 (2%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + + + V + + S+ +A D+ V G + Sbjct: 225 EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG 284 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK Sbjct: 285 MAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRK 343 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN- 281 + + + + VP GVI+RTA ++ E++RD E L + W+++++ A Sbjct: 344 LPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAKGT 401 Query: 282 --SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 S AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P + ++ Sbjct: 402 SGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRW 461 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDT 398 +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T + +E+T Sbjct: 462 TSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEET 521 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 + NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L +DR + QV Sbjct: 522 VTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAE 581 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 +++ GL++M+R+R+ +LES ++ C +C G G I Sbjct: 582 VTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 620 Score = 93.5 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ + E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 207 ERVMVVRQNGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 266 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 267 KGRNAVLYAGEV 278 >gi|182438733|ref|YP_001826452.1| hypothetical protein SGR_4940 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467249|dbj|BAG21769.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1415 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 142/536 (26%), Positives = 238/536 (44%), Gaps = 32/536 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 719 GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 778 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L + W+ Sbjct: 779 SMTG-ISRKLPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWE 835 Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++R+ A S AP L+Y E ++ R +RD++ +D S++IVSG++ + ++ + P Sbjct: 836 DIRKKAKGTSGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAP 895 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T Sbjct: 896 DLTERLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGKFT 955 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + +E+T + NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L + Sbjct: 956 GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 1015 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 DR + QV +++ GL++M+R+R+ +LES ++ C +C G G I S+ Sbjct: 1016 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME-QPTSVGGGGGG 1074 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY-----------------------EARF 546 + H H + E + Sbjct: 1075 KKSKKRGRGGAGHDHEHAQDHEHGHDEHAAEPAETEAEVAAEVAAPVAVEPEVTADEEFY 1134 Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 + + A ++AP + E V A Sbjct: 1135 SSPAEAEAAATRGRGRRRASRKASAPAGAPKTEASAPVAEAPVEEARPEPVLDTPAEAAA 1194 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ + + E + +RR R+ PA A V + D Sbjct: 1195 VEAPETPETPEA-PVEAAPQGRPRRRATRKATAPAGSPKQAEAAEPVRPAEPATDP 1249 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 650 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 709 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 710 KGRNAVLYAGEV 721 >gi|21325135|dbj|BAB99757.1| Ribonucleases G and E [Corynebacterium glutamicum ATCC 13032] Length = 756 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 149/627 (23%), Positives = 260/627 (41%), Gaps = 54/627 (8%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + +D + V I + S+ +A D+ V G Sbjct: 26 EDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKAAG 85 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 R I++ +K +LVQ+ K+ G+KGA +TT +SLAGRY V +P + ISRK Sbjct: 86 LGGRGRRIEQALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPG-GRSAGISRK 144 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + P ++ LKEI + G G I+RTA ++ I D L LW+ ++E Sbjct: 145 LPGPERKR-LKEILGRVVPAQG-GTIIRTAAEGVSEENIAADVNRLHTLWEQIKERTAEE 202 Query: 283 VAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 +YEE +++ + IRDL+ +D + +IV G++ + + +++ + P V Sbjct: 203 KKSRGSKPITMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSVAPDLVSRVE 262 Query: 338 QYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR-- 391 + F + QL+ +V LPS G +II++TEA+ IDVN+GR T Sbjct: 263 HFNRADFDGKDAFEAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDVNTGRYTGKG 322 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T N+EAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L E+L+ DR Sbjct: 323 GGNLEETVTLNNIEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLNEALENDR 382 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR------ 505 R QV +++ GL++M+R+RI + +LE+ + C +C+G G I V R Sbjct: 383 TRHQVSEVTSLGLVQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTVDERVEAKAE 442 Query: 506 -SVEEYLLQYTAHNIIVHTHSDVVLY-LLNQKRATIVEYEARFGVSI------------- 550 + + + V + L+ + + S+ Sbjct: 443 ERSRRHQRSNSTNKAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLDDSDLDDVVN 502 Query: 551 -------NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW----- 598 ++ + + + + + A + Sbjct: 503 DKLDEPERILAESTVEPEEGPRRRARRQRQESAADDIAAIAAAAVDIASEEDPDEPSGSS 562 Query: 599 -----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + E + P+ + + + E++ RRRR+ R + A D Sbjct: 563 YVSDFEAEPIAPVVEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRSDHAPKPEDF 622 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLE 680 + + + ++ + E Sbjct: 623 APVVEEVAETPVKTPARKAPRRNRPSE 649 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%) Query: 1 MANKMLIDAS----HVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55 M +M++ H T+V VL D+++ E S+ + + GNIYL +V V PS++ Sbjct: 1 MERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSME 60 Query: 56 AAFVDYGGNRHGFLPFLEI 74 AAF+D G R+G L E+ Sbjct: 61 AAFIDIGKGRNGVLYAGEV 79 >gi|89889612|ref|ZP_01201123.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium BBFL7] gi|89517885|gb|EAS20541.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium BBFL7] Length = 512 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 221/565 (39%), Gaps = 65/565 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I S + + ++ R+ EL + + K +I++AK +V L A+FV+ Sbjct: 1 MDKEIII-RSGSTKVDYALTKNGRLVELHQDEDENKFAVSDIFIAKSRKVLSGLNASFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT-HGDVTIPNDHS 119 G + GFL + ++ P Y +Q L + ++ G +T + Sbjct: 60 VGYEKDGFLHYHDLGPQYLTQFKFTKQILSGRRKNYALKDIKLEKELEKSGSITDVVAPN 119 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 + + T+ + + +Y + +R Sbjct: 120 QPILVQVVKEPISTKGPRLSAE--------------------LSIPGRYVVLVPFSDRIS 159 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 + +I E ++ + + AG I R + L + + L Sbjct: 160 ISQKIEDREEKSRLKRLVKSIKPAGF-----------GVIVRTVAKGKLVAELDQDLQNL 208 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 A N I R Sbjct: 209 ITKWEN--------------------------MCAKLHKANFPSKVMTEVSRTNSIMR-- 240 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 D++ + I+V E+ E KD++K + P IV+ + P+F + GIE Q+ + Sbjct: 241 -DVFNDTYTSIVVDDEEVCSEIKDYLKTIAPHKESIVKYHNPRTPVFEKYGIERQIKTSF 299 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLRD 418 V++ Y+II TEA+ IDVNSG + + EDTAL+TNL AA EIARQLRLRD Sbjct: 300 GRTVSMSKGAYLIIEHTEAMHVIDVNSGNRSNKANSQEDTALETNLIAASEIARQLRLRD 359 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM + +N + + + +++ + +DRA+ ++ S FGL++++RQR+R + Sbjct: 360 MGGIIVVDFIDMRQAENRKKLYEHMRDEMSEDRAKHKILPPSKFGLIQITRQRVRQEMNI 419 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 T + G I++ V I + E L+ I ++ H V ++ + Sbjct: 420 KTREENPDGNGN-EIQAPILVIYKI-KEELEKHLKNGHKKITLNAHPFVAAFITKGYPSI 477 Query: 539 IVEYEARFGVSINVVIGIELADKLF 563 ++ I V + Sbjct: 478 RSKWFMNHKKWIKVSPRDAYTYLEY 502 >gi|318042660|ref|ZP_07974616.1| ribonucleases G and E [Synechococcus sp. CB0101] Length = 688 Score = 217 bits (551), Expect = 6e-54, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 171/324 (52%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GR+ +L P+ +G ISR+ N Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLTLPGRFLILQPH-GQGVNISRR-INAESE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++RT ++ + D E L+R W+ ++ A ++ P L+ Sbjct: 140 RNRLRALGVLIKPPGAGLLIRTEAEGVSEELLIDDLEALLRQWEAIQTAAESATPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD Y D++ I++ G F+ Sbjct: 200 RDEDFIHRILRDHYSPDVARIVLDSADGVSRVNAFLGPDQSQVQVEQHLDSSEIL--EAF 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNYEAATE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G++++DFIDME +++ V + +++ D AR Q+ IS GL+E++R Sbjct: 318 IARQLKLRNIGGVVIIDFIDMESRRDQLQVLEHFTAAMRPDSARPQIAQISELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 88.5 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D+RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDDRVDELVV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G G ++GF+ ++ P Sbjct: 55 NIGEGEKNGFIHVTDLGP 72 >gi|271968506|ref|YP_003342702.1| ribonuclease E [Streptosporangium roseum DSM 43021] gi|270511681|gb|ACZ89959.1| Ribonuclease E [Streptosporangium roseum DSM 43021] Length = 922 Score = 217 bits (551), Expect = 6e-54, Method: Composition-based stats. Identities = 120/350 (34%), Positives = 203/350 (58%), Gaps = 4/350 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P+ Sbjct: 505 GEVNFDTAGLEGQPKRIEVALKSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPDG 564 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + +P GVI+RTA ++ E+ RD L W+ Sbjct: 565 SMTG-ISRKLPDKERTR--LKSILKKVMPENAGVIVRTAAEGASEEELGRDVARLSAQWE 621 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 N++ A ++ AP L+ E +L R +RD++ +D + ++V+G+ + ++++ + P A Sbjct: 622 NIQRKAKSASAPELLSSEPDLTVRVVRDVFNEDFTSLVVAGDDVWETVDEYVRYVAPHLA 681 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 + ++ED +F I+ Q+ + +V LPS G ++I++TEA+ +DVN+G+ T + Sbjct: 682 DRLSRWEDGADVFAAYRIDEQIAKAMERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQG 741 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 742 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLENNRDLVLRRLLECLARDRT 801 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 + QV +++ GL++M+R+R+ +LE+ + VC C G G S V Sbjct: 802 KHQVAEVTSLGLVQMTRKRVGQGLLEAFSTVCECCNGRGLHVSTEPVESK 851 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ D + E E + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 448 TQIAVMEDGVLVEHYVNREASQSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV 507 Query: 75 HPD 77 + D Sbjct: 508 NFD 510 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 3/132 (2%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 AP + V E P +E E+ +R RR+ Sbjct: 49 AAVEQPSAPVATEPETPVVTAEPEAPAVTAEPEP--ATAQPEPETAQETAPKRATRRKAA 106 Query: 640 PATDHHDAGVVSDVSSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 A + S + + + EP T + A + V Sbjct: 107 TTASTAPATTPARRSRAKKAAPEPVAEEAPEPVVETAPEPVAEEAPAPVKRSRTRRKAVQ 166 Query: 699 TPEMESSNSSSD 710 +D Sbjct: 167 QDVPAEPEPVAD 178 >gi|116670939|ref|YP_831872.1| ribonuclease [Arthrobacter sp. FB24] gi|116611048|gb|ABK03772.1| ribonuclease, Rne/Rng family [Arthrobacter sp. FB24] Length = 1113 Score = 217 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 122/444 (27%), Positives = 212/444 (47%), Gaps = 9/444 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ ++++ + + V+ SL + + Sbjct: 382 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 441 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D +Q I+ +K+ +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 442 RGRNAVLYAGEVNWDAVNLEGKQRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPG 501 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RY V +P S ISRK+ + + + +P GVI+RTA ++ E+ D Sbjct: 502 RYLVYVPGGSMTG-ISRKLPDVERNRLKR--ILKDRLPEDAGVIVRTAAEGASEEELTHD 558 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ + A ++ L+Y E +L + +RD++ +D S++IVSGE+ + + Sbjct: 559 INRLRAQWEGIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIE 618 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P + ++ IF I+ Q+ +V LPS G ++I++TEA+ + Sbjct: 619 AYVTYVAPDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEAMTVV 678 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEE+ RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 679 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 738 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 ++ E L +DR + QV +++ GL++M+R+R+ + +LE + C C G G + V Sbjct: 739 RMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDEPVEH 798 Query: 502 SILRSVEEYLLQYTAHNIIVHTHS 525 R ++ Sbjct: 799 ---RRANTVAAEHHVQRTEAQQPP 819 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 + +I + ++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 383 RQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 442 Query: 64 NRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 443 GRNAVLYAGEVNWD 456 >gi|184200774|ref|YP_001854981.1| putative ribonuclease [Kocuria rhizophila DC2201] gi|183581004|dbj|BAG29475.1| putative ribonuclease [Kocuria rhizophila DC2201] Length = 1145 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 114/348 (32%), Positives = 198/348 (56%), Gaps = 6/348 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 400 GEVDWDAAEMGHKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGG 459 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ K +P G GVI+RTA ++ E+ D L W+ Sbjct: 460 SMTG-ISRKLPDVERQRLKK--ILKDRLPEGAGVIVRTAAEGASETELTNDINRLRSQWE 516 Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 ++E A ++ L+Y E +L + +RD++ +D + ++V GE+ + + ++ + P Sbjct: 517 QIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWDNIEAYVTYVAPD 576 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 ++++ + +F +E Q+ + +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 577 LLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTG 636 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +D Sbjct: 637 SGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRD 696 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 R + QV +++ GL++M+R+R+ + +LE ++ C C G G + Sbjct: 697 RTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRGVLVHDHP 744 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 ++ VL D + E + + GN+Y+ KV V PS++AAFVD G R+ L E+ Sbjct: 343 IQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 402 Query: 75 HPD 77 D Sbjct: 403 DWD 405 >gi|258651734|ref|YP_003200890.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233] gi|258554959|gb|ACV77901.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233] Length = 1080 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 118/354 (33%), Positives = 194/354 (54%), Gaps = 10/354 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ + + +L Q+ K+ G+KGA +TT +SL GR+ V +P Sbjct: 436 GEVNWDAAGLGGKARRIESALSSGDTILAQVSKDPVGHKGARLTTQISLPGRFLVYVPGG 495 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ + VP GVI+RTA ++ E+ RD E L W+ Sbjct: 496 G-ATGISRKLPDTERKR--LKAILDRIVPEDAGVIIRTAAEGVSEEELARDVERLKAQWE 552 Query: 274 NVRELAL-NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + A AP L+Y E + + +RDL+ DI+ ++V G+ G + + + Sbjct: 553 EISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDTVWGPVSDYVNAV 612 Query: 333 ARI-----VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 A VR D +F I+ Q+ + +V LPS G ++I++TEA+ +DVN+G Sbjct: 613 APELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVIDRTEAMTVVDVNTG 672 Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 + T +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E+ Sbjct: 673 KYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRELVMRRLTEA 732 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR R QV +++ GL++M+R+R+ + ++E+ ++ C +C G G + + +A Sbjct: 733 LGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIVLHEMPLA 786 Score = 90.4 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 +V +L D + E + G+++L KV V PS++AAFVD G R+ + E++ Sbjct: 380 QVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIGRGRNAVIYAGEVN 439 Query: 76 PD 77 D Sbjct: 440 WD 441 >gi|324999856|ref|ZP_08120968.1| ribonuclease, Rne/Rng family protein [Pseudonocardia sp. P1] Length = 804 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 119/355 (33%), Positives = 200/355 (56%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + + +LVQ+ K+ G+KGA +TT +SLAGR+ V +P+ Sbjct: 300 GEVNWDAAGLNGKARKIEQALSSGDQVLVQVTKDPVGHKGARLTTQISLAGRFLVYVPSG 359 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ LKE+ + + GVI+RTA + ++RD L W+ Sbjct: 360 GAAG-ISRKLPDTERKR-LKEMLKEIVPS-EAGVIIRTASEGVSHDALERDVRRLQAQWE 416 Query: 274 NVRELALNS-----VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 V+E + + AP L+YEE +++ + +RD + +D S++IVSG + +++ + Sbjct: 417 VVKEKSEKTGPGAPKAPTLLYEEPDMLVKVVRDQFNEDFSKLIVSGADAWDTVSGYVEHV 476 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + ++ P +F I+ QL +V LPS G ++I++TEA+ +DVN+G+ Sbjct: 477 ASELTERMHRHTGPSDVFTEYRIDEQLLKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGK 536 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLEAAEE+ RQLRLRD+ G+IVVDFIDM + N V ++L E L Sbjct: 537 FTGSGGNLEETVTRNNLEAAEEVVRQLRLRDIGGIIVVDFIDMVLEANRDLVLRRLTECL 596 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R+R+ +LE + C +C+G G + S Sbjct: 597 ARDRTRHQVAEVTSLGLVQMTRKRVGGGLLEHFSTPCEHCRGRGVVISTDPAEQH 651 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQ-IKGNIYLAKVTRVEPSLQAAFVDY 61 +M+I + T + VL D+ + E + GNIYL +V V PS++AAFVD Sbjct: 231 RQMVI-RQLADRTEIGVLEDSVLVEHFITGGGSGSSMVGNIYLGRVQNVLPSMEAAFVDI 289 Query: 62 GGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 290 GRGRNAVLYAGEVNWD 305 >gi|227833691|ref|YP_002835398.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975] gi|262184697|ref|ZP_06044118.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975] gi|227454707|gb|ACP33460.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975] Length = 1062 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 149/615 (24%), Positives = 252/615 (40%), Gaps = 49/615 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R ++ +K+ +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 425 GDIDWRALGIGGRSRKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYVPG- 483 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + +P G I+RTA + ++ +I D L LW+ Sbjct: 484 GRSAGISRKLPAPERKR--LKGILERVIPGDGGAIIRTAAENVSEEDIASDVNRLHSLWE 541 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++ A + A +YEE +L+ + +RDL+ +D S ++V G++ Y ++ + Sbjct: 542 DISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDSM 601 Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 A V +Y+ F I+ QL +V LPS G ++I++TEA+ IDV Sbjct: 602 AHDLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVIDV 661 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM +N V ++L Sbjct: 662 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRRL 721 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 KE+L +DR R QV +++ GL++M+R+R+ + ++E+ + C C G G I + V Sbjct: 722 KEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGIIIHEYPVDEDP 781 Query: 504 LRS----VEEYLLQYTAHNIIVHTHSDVVLYLLNQK---------------RATIVEYEA 544 + A H V + + R E Sbjct: 782 EEENSKPQRRGRKERRAPQRDPKKHPAAVRMHRDDEDAAAEHETATEKETSRDDDSSLEE 841 Query: 545 RFGVSINVVIGIELADKL-----FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 ++ VV E + + + + S+ P Q Sbjct: 842 LV-ANVVVVDEDEPETPDSASIGYAVAESLDAKRSKPKPKSKAKRSRKPRRATRTFREPQ 900 Query: 600 DEAL-----------LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 E +E + EE+ K RR+RR R + Sbjct: 901 REETSEGSRAKHGKRDEHADAEKASPQRSEQTYEEAVEAFEKSPRRKRRTRGNSRSDIRP 960 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 D + + D+ + E G + +M S S+ Sbjct: 961 KREDFAQDETSAKDAQLATSKKEAKAERKGAEPGENTSVRATRSRGRRRVVRKMAQSQST 1020 Query: 709 SDPIVKKTRWWKRRK 723 ++ +R+ Sbjct: 1021 PASNDREQGSEAQRR 1035 Score = 87.7 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E +E GNIYL +V V PS++AAFVD G R+G L +I Sbjct: 368 TQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI 427 >gi|226307282|ref|YP_002767242.1| ribonuclease [Rhodococcus erythropolis PR4] gi|226186399|dbj|BAH34503.1| putative ribonuclease [Rhodococcus erythropolis PR4] Length = 1099 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 140/554 (25%), Positives = 239/554 (43%), Gaps = 42/554 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 526 GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 584 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272 ISRK+ + ++ LKEI R + GVI+RTA ++ E+ RD L W Sbjct: 585 GTSTGISRKLPDTERKR-LKEILRDIVPA-DAGVIIRTASEGVSEEELARDVTRLQAQWA 642 Query: 273 ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 S P +YEE +++ + IRDL+ +D S++++ GEK + ++++ + Sbjct: 643 GIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFNEDFSKLVIEGEKAHTTVENYINSV 702 Query: 329 MPSYARIVRQYEDP--HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 P + +Y +F I+ QL +V LPS G ++I++TEA+ +DVN+ Sbjct: 703 APDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 762 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 G+ T +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E Sbjct: 763 GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 822 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 L +DR R QV +++ GL++M+R+++ + ++E+ + C +C G G I V + Sbjct: 823 CLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHSEPVEVKSSD 882 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + KR + + Sbjct: 883 DGGSRSGSQRSESGTS----------RKNKRG---------------RGDKSPSTE---- 913 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 G A P D+ + ES D ++++ Sbjct: 914 SNGQEAPAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSIES--DSTGTSSGDDAS 971 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +++ R AT+ HD VV + + +D+ + + Sbjct: 972 KSADRQQDRPIDTPAATERHDVPVVDSAAEEVSAVDNESAAASTEAAPRGRRRSRRASRA 1031 Query: 686 FTENYDVSIPPVST 699 + + P V T Sbjct: 1032 ASAPVAEAAPEVGT 1045 Score = 97.0 bits (239), Expect = 9e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E + + GN+YL +V V PS++AAF+D G R+G L E+ Sbjct: 469 TQVAVLEDGVLVEHFVTNSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 528 Query: 75 HPD 77 + + Sbjct: 529 NWE 531 >gi|145296333|ref|YP_001139154.1| hypothetical protein cgR_2248 [Corynebacterium glutamicum R] gi|140846253|dbj|BAF55252.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1021 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 141/576 (24%), Positives = 243/576 (42%), Gaps = 52/576 (9%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 342 GEVDWKAAGLGGRGRRIEQALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPG- 400 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ LKEI + G G I+RTA ++ I D L LW+ Sbjct: 401 GRSAGISRKLPGPERKR-LKEILGRVVPAQG-GTIIRTAAEGVSEENIAADVNRLHTLWE 458 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++E +YEE +++ + IRDL+ +D + +IV G++ + + +++ + Sbjct: 459 QIKERTAKEKKSRGSKPITMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSV 518 Query: 329 MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P V ++ F + QL+ +V LPS G +II++TEA+ IDV Sbjct: 519 APDLVSRVEHFDRADFDGKDAFEAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDV 578 Query: 385 NSGRSTR--EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 N+GR T +E+T N+EAAEEI RQ+RLRDL G+IVVDFIDM +N V ++ Sbjct: 579 NTGRYTGKGGGNLEETVTLNNIEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRR 638 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L E+L+ DR R QV +++ GL++M+R+RI + +LE+ + C +C+G G I V Sbjct: 639 LNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTV 698 Query: 503 ILR-------SVEEYLLQYTAHNIIVHTHSDVVLY-LLNQKRATIVEYEARFGVSI---- 550 R + + V + L+ + + S+ Sbjct: 699 DERVEAKAEERSRRHQRSNSTKKAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLD 758 Query: 551 ----------------NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 ++ + + + + + A Sbjct: 759 DSDLDDVVNDKLDEPERILAESTVEPEEGPRRRARRQRQKSAADDIAAIAAAAVDIASEE 818 Query: 595 ECVW----------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 + + E + P+ + + + E++ RRRR+ R + Sbjct: 819 DPDEPSGSLYVSDFEAEPIAPVVEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRS 878 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 A D + + + ++ + E Sbjct: 879 DHAPKPEDFAPVVEEVAETPVKTPARKAPRRNRPSE 914 Score = 87.7 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%) Query: 1 MANKMLIDAS----HVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55 M +M++ H T+V VL D+++ E S+ + + GNIYL +V V PS++ Sbjct: 266 MERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSME 325 Query: 56 AAFVDYGGNRHGFLPFLEI 74 AAF+D G R+G L E+ Sbjct: 326 AAFIDIGKGRNGVLYAGEV 344 >gi|126654720|ref|ZP_01726254.1| Ribonuclease E and G [Cyanothece sp. CCY0110] gi|126623455|gb|EAZ94159.1| Ribonuclease E and G [Cyanothece sp. CCY0110] Length = 669 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 141/549 (25%), Positives = 236/549 (42%), Gaps = 29/549 (5%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T +SL GRY VLMPN KG +SR+I N +R Sbjct: 82 ITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMPN-GKGVNLSRRIRNDDER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E+L R W++++ A ++ AP L+ Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQRQWESIQVQATSTRAPSLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346 + + I+R +RD+Y D++ I+V G + K + + Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPSGVKRVKHHLMNWSGGRPPEGVLIDHHRESMSVL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAVREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G+I+VDFIDM+ +++ + + ++LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKVDKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E + C C G G++ + ++ T Sbjct: 380 LTRKRQGKNIYELFGQPCPQCGGLGHLAHLPGES-QLVALESSANPTLPIPAPTPVTPKP 438 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 V + + +E ++ + + H Q Sbjct: 439 VEKPVEVNDSSWDSSFE----------------------DEDNDNSDELELLHHPSYQEQ 476 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + + Q L+ S + + +++ + RR R R + Sbjct: 477 NSNANNRRRRRRQTPNLVIKEDSPKPSNNGGSKEGDDNNESSYENRRERLPRHLRREESP 536 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 VS V D M + P + + + + + + E+S Sbjct: 537 VEKVS-VEMTPLEQDVYALMGISPLVRLDKEFKDPKSVVVSVKSPDGVERKTIELTETST 595 Query: 707 SSSDPIVKK 715 + K+ Sbjct: 596 PEVETPAKE 604 Score = 71.2 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I H V +++++EL Q +I+L V V P + AAFV+ Sbjct: 1 MPKQIIIAEKHHI---AAVFWEDQIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAFVN 55 Query: 61 YG-GNRHGFLPFLEIHP 76 G R+GF+ ++ P Sbjct: 56 IGDAERNGFIHVTDLGP 72 >gi|325068506|ref|ZP_08127179.1| ribonuclease, Rne/Rng family protein [Actinomyces oris K20] Length = 844 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 142/587 (24%), Positives = 242/587 (41%), Gaps = 30/587 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ + + +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 256 GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 315 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + K VP GVI+RTA T+ ++ D E L+ W+ Sbjct: 316 TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGATQEQLTADVERLVAQWE 372 Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + + AP L+ E L R IRD++ +D ++IVSG+ + ++ + Sbjct: 373 AIDKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLIVSGDNTWSTISQYIDEV 432 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P + + + P +F ++ QL +V LPS G ++I++TEA+ IDVN+GR Sbjct: 433 SPDLSERLEHWVGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 492 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L Sbjct: 493 FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 552 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS----- 502 +DR R QV +++ GL++M+R+R+ ++E+ + C +CKG G+I V Sbjct: 553 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQQIDMS 612 Query: 503 ----------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 R E + ++ G + Sbjct: 613 ASASRGGGRSRGRKNREEQATGGGKKETKKDSQETKGSKSSKGSGRGKAL---AGRDVAA 669 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI--PKSE 610 + D+ +G+ Q Q + + + + Sbjct: 670 SPESGVDDEARAAVRGALAQIAAAAEQAHKDSQQEGQDPHEGQGAVEVAGVSNSVHDAAG 729 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV-VSDVSSIQNVIDDSFDMYME 669 + ED++ E S + + + R R+ A E Sbjct: 730 AAEDVEPVGGQEVSDSLAEDKPVKTRSRKAADKKSAKKTGEKKGDKADKKSGRKTGKKAE 789 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 T G V PV ++ S+ P + + Sbjct: 790 KKVATTSEDPAEPQPGEASAEPVEEKPVRRTRRRATAKSAAPSPENS 836 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ VL D + E + + GN+Y+ +V V PS++AAFVD G R+ L E++ Sbjct: 200 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 259 Query: 76 PD 77 D Sbjct: 260 WD 261 >gi|116075703|ref|ZP_01472962.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9916] gi|116067018|gb|EAU72773.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9916] Length = 672 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P + +G ISR+ + Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRR-ISAEGE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++RT ++ + D E L+R W+ +++ A ++V P L+ Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEAEGVSEELLIDDLETLLRQWEAIQKAAESAVPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D+ +++ +DF+ + V + +P I Sbjct: 200 RDEDFIHRILRDHAGPDLVRVVLDDPGAVDRVRDFLGQDDNNVL--VEAHSEPAEILEHF 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I+VDFIDM+ +++ + + +++ D AR Q+ +S GL+E++R Sbjct: 318 IARQLKLRNIGGVIIVDFIDMDSRRDQLQLLEHFTAAIRDDAARPQIAQLSELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIII----AEQLRIAAVLSDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|317968684|ref|ZP_07970074.1| ribonucleases G and E [Synechococcus sp. CB0205] Length = 467 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 116/366 (31%), Positives = 190/366 (51%), Gaps = 5/366 (1%) Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQILLVQIVKE 187 + E I +A ++ ++ + P + K+ I E+++ RQ +LVQ++KE Sbjct: 40 GTIENVLPGIDAAFVNIGEGEKNGFIHVTDLGPLRLKKGTVGITELLEPRQKVLVQVMKE 99 Query: 188 ERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGV 247 G KG +T L+L GR+ VL P+ +G ISR+IT +R L+ L P G G+ Sbjct: 100 PTGTKGPRLTGNLTLPGRFLVLQPH-GQGVNISRRITAESERNRLRA-LGVLIKPPGAGL 157 Query: 248 ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDI 307 ++RT ++ ++ D E L+R W+ ++ A + P L+ + + I R +RD Y ++ Sbjct: 158 LIRTEAEGISEEQLIDDLEALLRQWEAIQTAAEAATPPVLLNRDDDFIHRILRDHYTPEL 217 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 + I+V F+ +V + +P I + + LPS Sbjct: 218 ARIVVDAPDAVARVNTFLS--SDHQQVLVEHHSEPTEILEHYKVNAAIRDALTPRADLPS 275 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 GYVII TEAL IDVNSG TR +T L TN EAA EIARQL+LR++ G++++DF Sbjct: 276 GGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNYEAATEIARQLKLRNIGGVVIIDF 335 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDME +++ + + ++ D AR Q+ IS GL+E++R+R ++ E + C C Sbjct: 336 IDMESRRDQLQLLEHFTSEVRSDSARPQIAQISELGLVELTRKRQGQNIYELFGRACPSC 395 Query: 488 KGAGYI 493 G G++ Sbjct: 396 GGLGHV 401 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL + V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDERVDELVV--AQGRYQIGDVYLGTIENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G G ++GF+ ++ P Sbjct: 55 NIGEGEKNGFIHVTDLGP 72 >gi|158334868|ref|YP_001516040.1| ribonuclease E [Acaryochloris marina MBIC11017] gi|158305109|gb|ABW26726.1| ribonuclease E [Acaryochloris marina MBIC11017] Length = 674 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 147/616 (23%), Positives = 247/616 (40%), Gaps = 27/616 (4%) Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 + +V I E I +A ++ + + P + KR Sbjct: 18 SEDQIQELIVATGSHQVGDIYLGIVENVLPGIDAAFVNIGDAERNGFIHVSDLGPVRLKR 77 Query: 167 QYC-IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 I E++ +Q +LVQI+KE G KG +T +SL GRY VLMP + +G +SR+I Sbjct: 78 NSGAITELLAPQQKVLVQIMKEPTGTKGPRLTGNISLPGRYLVLMP-SGRGVNLSRRIR- 135 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 D ++ L PAGMG+++RT + I D E L R W++V++ A ++ AP Sbjct: 136 AEDERSRLRALGILIKPAGMGLLVRTEAEGVAEEAIIEDLELLQRQWESVQQQAASTRAP 195 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV----RQYED 341 L+ + + I+R +RD+Y +++ I+V G + K + + Q+ + Sbjct: 196 ALLDRDTDFIQRVLRDVYSSNVNRIVVDSTPGLKRVKQHLVNWNNTNKLPQGVLVDQHRE 255 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 I + + + V LPS GY+II +TEAL +DVNSG TR +T L Sbjct: 256 STSILEYFRVNAAIREALKPRVDLPSGGYIIIEKTEALTVVDVNSGSFTRSATARETVLW 315 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TN EAA EIARQLRLR++AG+I++DFIDM+ +++ V + ++LK D+AR Q+ ++ Sbjct: 316 TNCEAAAEIARQLRLRNIAGVIIIDFIDMDSRRDQLQVLEHFNKALKADKARPQIAQLTE 375 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL+E++R+R ++ E C C G G++ A + VE + Sbjct: 376 LGLVELTRKRQGQNIYELFGTPCPACSGLGHLVHLPGEAAPTVGEVEWSEPSKPSPTSTS 435 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 + LN I++ +L E Sbjct: 436 GVPLPGISANLND--------------QIHLDPSDDLQ------ELDLTNHPSYQERGNR 475 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 ++ D + S+S N + ++ R R R Sbjct: 476 RRRRRSRLGDNLSRESLSPRLVRNGSASDSKPVKSTNDTNGSTSSKSGGNERSRGRSSTR 535 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 V V+ D M + P+ + + + + Sbjct: 536 QRQDTPPEVISVTMTPEEQDIYAFMGISPTVLFPGEIKKPKSAIVEILAPGETSSTPNTT 595 Query: 702 MESSNSSSDPIVKKTR 717 + + K T+ Sbjct: 596 ATKVITKELVVAKDTK 611 Score = 88.1 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ V +++++EL + G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHRIAAVFSEDQIQELIVATGSH--QVGDIYLGIVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDAERNGFIHVSDLGP 72 >gi|284049151|ref|YP_003399490.1| ribonuclease, Rne/Rng family [Acidaminococcus fermentans DSM 20731] gi|283953372|gb|ADB48175.1| ribonuclease, Rne/Rng family [Acidaminococcus fermentans DSM 20731] Length = 476 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 134/392 (34%), Positives = 211/392 (53%), Gaps = 7/392 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 Q+LLVQ+VK+ RG+KG AVT ++L GRY VL P S+ ++SRKI+ RK L++ Sbjct: 76 SEGQMLLVQVVKDARGSKGPAVTRDITLPGRYVVLEPYGSR-VSLSRKISCKTKRKELRD 134 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 AR L MG++LRTA A + EI+ D E L+R WD + + P L+Y E +L Sbjct: 135 WARELLPDH-MGLVLRTAAAHAEEDEIRADLEQLLRNWDVLVRRSKVGRGPQLLYRELDL 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 R +RD + IIV EK R ++ ++ + V+ Y +F ++ Sbjct: 194 AIRLVRDYVTDRVERIIVDEEKTCRRLQEMLRDMGLPGI-QVKLYRGKEDLFTFYRLDED 252 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++SL V LP GY++I+ TEA+ IDVNSG+ + + T++ TN EAA EIARQL Sbjct: 253 IESLSDRVVWLPGGGYLVIDCTEAMTVIDVNSGKFSTGADRDATSMATNREAAREIARQL 312 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRD+ G+IV DFIDM+ ++ + + LK+ D+ + +V ++ L+EM+R + R Sbjct: 313 RLRDIGGIIVADFIDMDREEEQEEILQILKKEFASDKMKPKVIDLTQLNLVEMTRMKARK 372 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLN 533 ++ C C G+G + S +V + I R + LQ +H +++ H V +L Sbjct: 373 NLAGILYTTCPLCGGSGRVESPETVYVEIRRRLRSTFLQGKMSHALLLTVHPLVYSWLRQ 432 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Q + + E F S+ + L +F + Sbjct: 433 QG---LRDMEQEFHCSLKLASDPSLEVGVFTL 461 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 + EETR+ + D+++ + E + GN+Y A+V V P +QAAFVD ++GF Sbjct: 7 SVRPEETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDLNTGKNGF 66 Query: 69 L 69 L Sbjct: 67 L 67 >gi|325963637|ref|YP_004241543.1| ribonuclease, Rne/Rng family [Arthrobacter phenanthrenivorans Sphe3] gi|323469724|gb|ADX73409.1| ribonuclease, Rne/Rng family [Arthrobacter phenanthrenivorans Sphe3] Length = 1197 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 120/417 (28%), Positives = 210/417 (50%), Gaps = 6/417 (1%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ ++++ + + + V+ SL + + Sbjct: 454 DRQMIVRQRDDRIQIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 513 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D +Q I+ +K+ +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 514 RGRNAVLYAGEVNWDAVNLEGKQRRIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPG 573 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RY V +P S ISRK+ + + + + L GVI+RTA ++ E+ D Sbjct: 574 RYLVYVPGGSMTG-ISRKLPDVERNRLKRILKDRLPEQ--AGVIVRTAAEGASEEELTHD 630 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ + + ++ L+Y E +L + +RD++ +D S++IVSGE+ + + Sbjct: 631 INRLRAQWEGIESQSQSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIE 690 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P + ++ IF I+ Q+ + +V LPS G ++I++TEA+ + Sbjct: 691 AYVTYVAPDLVGRLEKWTKDQDIFSAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVV 750 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEE+ RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 751 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 810 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 +L E L +DR + QV +++ GL++M+R+R+ + +LE + C C G G + Sbjct: 811 RLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDDP 867 Score = 98.1 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 + +I + ++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 455 RQMIVRQRDDRIQIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 514 Query: 64 NRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 515 GRNAVLYAGEVNWD 528 >gi|16329250|ref|NP_439978.1| ribonuclease E [Synechocystis sp. PCC 6803] gi|6094111|sp|P72656|RNE_SYNY3 RecName: Full=Ribonuclease E homolog; Short=RNase E gi|1651730|dbj|BAA16658.1| ribonuclease E [Synechocystis sp. PCC 6803] Length = 674 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 110/327 (33%), Positives = 177/327 (54%), Gaps = 5/327 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T +S+ GRY VLMP +G +SR+ N + Sbjct: 82 ISELLSPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMVLMP-YGRGVNLSRR-INREEE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 ++ L P GMG+++RT + I D E L + W+ V++ A+ AP L+ Sbjct: 140 RSRLRALAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQKQWELVQQQAMTRSAPMLLD 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + IKR +RD+Y +++ I+V G + K + + + + I Sbjct: 200 RDDDFIKRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQGRLPEGVLIDCHRESLSIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG T +T L TN EA Sbjct: 260 EYFRVNATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTHSANSRETVLWTNYEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQL+LR++ G+I++DFIDM+ K+ + + L+ D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCLETDKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI 493 ++R+R ++ E + C C G G++ Sbjct: 380 LTRKRQGQNLYELFGQPCPECGGLGHL 406 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I H +V + +D +++EL + Q G+IYL V + PS+ AAF Sbjct: 1 MPKQIVIAEKH----QVAAVFWKD-QIQELVVSTGS--QQVGDIYLGLVDNILPSIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 ++ G ++GF+ ++ P Sbjct: 54 INIGDTEKNGFIHVSDLGP 72 >gi|256396379|ref|YP_003117943.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928] gi|256362605|gb|ACU76102.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928] Length = 1334 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 123/356 (34%), Positives = 201/356 (56%), Gaps = 6/356 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I+ V+K+ Q +L Q+ K+ G+KGA +T+ +SL GRY V +P ISRK+ Sbjct: 763 QAKRIESVLKSGQAVLTQVTKDPIGHKGARLTSQISLPGRYLVYVP-EGTMTGISRKLPE 821 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS--V 283 + + VP GVI+RTA T+ E++RD E L W+ ++ A S Sbjct: 822 NERNR--LKTILKAVVPEHAGVIVRTAAEGATEDELRRDVERLSAQWEEIQRKAKTSAGS 879 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+Y E +L R +RD++ +D S+++VSG++ + ++++ + P A + ++ Sbjct: 880 APTLLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAWDTIREYVGGVAPDLAPRLERWTSEQ 939 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 IF ++ QL +V LPS G ++I++TEA+V IDVN+G+ T +E+T + Sbjct: 940 DIFAVHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGSGGNLEETVTRN 999 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 N+EAAEEI RQLRLRDL G+IV+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 1000 NIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSL 1059 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 GL++M+R+R+ +LE+ ++ C C G G + V E+ + Sbjct: 1060 GLIQMTRKRVGQGLLEAFSETCDKCNGRGVLVHMEPVPHGHGHGSEDADRDGRSQQ 1115 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 694 TQIGVLEDGVLVEHYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV 753 >gi|308177601|ref|YP_003917007.1| ribonuclease [Arthrobacter arilaitensis Re117] gi|307745064|emb|CBT76036.1| putative ribonuclease [Arthrobacter arilaitensis Re117] Length = 946 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 138/600 (23%), Positives = 247/600 (41%), Gaps = 47/600 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G DV I+ +K +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 313 GEVNWDVAALEGAPRRIENALKAGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGG 372 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ K +P GVI+RTA ++ E+ D L W+ Sbjct: 373 SMTG-ISRKLPDVERQRLKK--ILKDHLPENAGVIVRTAAEGASEEELTNDINRLRAQWE 429 Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 + E A ++ L+Y E +L + +RD++ +D +++IVSGE + + ++ + P Sbjct: 430 GIEEQANSTKTLAPELLYSEPDLTIKVVRDVFNEDFTKLIVSGEHAWDTIEAYVMYVAPD 489 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 + ++E IF ++ Q+ +V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 490 LMGRLEKWEAEEDIFTNFRVDEQIAKALDRKVFLPSGGSLVIDRTEAMTVIDVNTGKFTG 549 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEE+ RQLRLRD+ G+IV+DFIDM + N V ++L E L +D Sbjct: 550 SGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRD 609 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS------------ 498 R + QV +++ GL++M+R+R+ + +LE + C +C GAG I Sbjct: 610 RTKHQVAEVTSLGLIQMTRKRMGTGLLEVFGEECEHCAGAGVITHDEPVETRKTFNSAGE 669 Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK----RATIVEYEARFGVSINVV 553 + + + +K R + A + Sbjct: 670 QHTKKFNDKPSRNSRRRRGGEKDEAKPVEKKEPVSEEKDEATRHALANIAAASHLDAAAD 729 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW--------------- 598 + + + + K + ++ P ++ E Sbjct: 730 NAVSIDGEQIPVTKAQASDSEAAAVTLEALEAALPGKGESSEEQDGSRKPRRRSRSRGRN 789 Query: 599 ----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-----AGV 649 ++ S +LE + S + R+R RR RP G+ Sbjct: 790 RNQLEESTSGNDEASATLEQPAAPGPEQASKSEEQPRKRSRRASRPQAAAQQDQPVITGL 849 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 +S + S + + + + + + + S++ Sbjct: 850 AMPAASAPAAAETSTAVSAPVAAPAATTQNSTKPKRRSRRATSAQGDATAEVLVAEVSAA 909 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 KM I + ++ VL D + E + + GN+Y+ KV V PS++AAFVD Sbjct: 244 ERKM-IVRQREDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYVGKVQNVLPSMEAAFVDI 302 Query: 62 GGNRHGFLPFLEIHPD 77 G R+ L E++ D Sbjct: 303 GRGRNAVLYAGEVNWD 318 >gi|254430473|ref|ZP_05044176.1| ribonuclease E [Cyanobium sp. PCC 7001] gi|197624926|gb|EDY37485.1| ribonuclease E [Cyanobium sp. PCC 7001] Length = 688 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 184/324 (56%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P+ +G TISR++ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVTISRRVNGDNER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT ++ + D E L+R W+ ++ A + P L+ Sbjct: 141 NRLRA-LGVLIKPPGAGLLVRTEAEGVSEELLIEDLESLLRQWEAIQTAAETASPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RDLY +++ ++V +G AK F+ + V ++ P I Sbjct: 200 RDEDFIHRILRDLYSQELVRVVVDSPEGVSRAKAFLGADHSNVL--VEAHDAPSDILEAY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVSAAIHDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G++V+DFIDME +++ V + ++++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVVVIDFIDMESRRDQLQVLEHFTQAVRDDAARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 87.7 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLNDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHITDLGP 72 >gi|159028468|emb|CAO87275.1| rne [Microcystis aeruginosa PCC 7806] Length = 724 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 135/486 (27%), Positives = 228/486 (46%), Gaps = 16/486 (3%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T ++L GRY VLMPN +G +SR+I + +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGNKGPRLTGNVTLPGRYLVLMPN-GRGVNLSRRIRSEDER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E+L + W++++++A++S AP L+ Sbjct: 141 SRLRA-LGILVKPAGMGLLVRTEAEGKAEEAIIEDLEFLQKQWESIQQMAVSSRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ---YEDPHPIF 346 + + I+R +RD+Y D++ I+V + K + A + + PI Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPMAVKRVKQQLTNWGGGKALEGVYIDSHRETQPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAIREALKLRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G++VVDFIDM+ +++ + + ++LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVVVVDFIDMDSRRDQLKLLELFNKALKSDKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E K C +C G G++ +I +I T++ Sbjct: 380 LTRKRQGKNIYELFGKTCDHCGGLGHLAHLPGEGSAIALETPTLSRGEKETLVIAPTNTK 439 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 V L ++ ++ E V + Q + + S+ Sbjct: 440 V---LPDKSAPSVAAAEPYLEVFSEFEAEENAQEMDLSFHPNYQEQVNNSRRRRRRRPSE 496 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 ++ E + I ++ R R +R +T + Sbjct: 497 LLLKEERGEKASTNGVNNEIE--------PESEPQRLEEKRERPARLSKRGEDASTAKNI 548 Query: 647 AGVVSD 652 + Sbjct: 549 PVTERE 554 Score = 71.9 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I E+ + + D +++EL Q +IYL V V P + AAF Sbjct: 1 MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVADIYLGLVENVIPGIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 V+ G R+GF+ ++ P Sbjct: 54 VNIGDAERNGFIHVTDLGP 72 >gi|291302927|ref|YP_003514205.1| ribonuclease Rne/Rng family [Stackebrandtia nassauensis DSM 44728] gi|290572147|gb|ADD45112.1| ribonuclease, Rne/Rng family [Stackebrandtia nassauensis DSM 44728] Length = 717 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 119/349 (34%), Positives = 198/349 (56%), Gaps = 4/349 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ + +LVQ+ K+ G+KGA +T++++L+GR+ V +P+ Sbjct: 313 GEVNWDRTGLSGRTRTIEQAMNAGDSVLVQVTKDPVGHKGARLTSHIALSGRHLVYVPH- 371 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + R+ L+ + L G GVI+RTA +++RD L W+ Sbjct: 372 GNASGISRKLPDSERRR-LRSTLKKLVPE-GAGVIVRTAAEGADTDDLERDIARLQSEWE 429 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + A AP L++ E +L+ R +RD++ +D +E+IV + Y E + ++ + P Sbjct: 430 AIEAKAAKGGAPALLHAEPDLLVRVVRDVFNEDFNEVIVDDDAAYAEVEKYLSSVSPDLV 489 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 ++++ IF ++ QL +V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 490 SRLKRHTGTGDIFAEQRVDEQLLKALDRKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGAG 549 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 550 GNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRT 609 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + QV I++ GL++M+R+R+ +LE+ ++ C +CKG G I Sbjct: 610 KHQVTEITSLGLVQMTRKRVGQGLLEAFSEPCEHCKGRGVIVDTDLSGN 658 Score = 99.3 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 L+ H + T++ VL D+ + E + + GN+YL KV + PS++AAF+D G R Sbjct: 247 LVVRGHGDRTQIAVLEDDLLVEHFVTRAGGQGMAGNVYLGKVQNILPSMEAAFIDIGRGR 306 Query: 66 HGFLPFLEIHPD 77 + L E++ D Sbjct: 307 NAVLYAGEVNWD 318 >gi|295395000|ref|ZP_06805212.1| ribonuclease G and E [Brevibacterium mcbrellneri ATCC 49030] gi|294972159|gb|EFG48022.1| ribonuclease G and E [Brevibacterium mcbrellneri ATCC 49030] Length = 924 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 125/485 (25%), Positives = 228/485 (47%), Gaps = 9/485 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G DV + + I+ + +LVQ+ K+ G+KGA +T+ +SL GR+ V +PN Sbjct: 427 GEVNWDVLGMDGKPHRIEVALNPGDSVLVQVTKDPIGHKGARLTSQISLPGRFLVYVPNN 486 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + ++ K G VP G GVI+RTA ++ E+ RD + L + W Sbjct: 487 AMTG-ISRKLPDKERQRLRK--LLGDAVPEGNGVIVRTAAEGASEEELTRDIDRLAKRWQ 543 Query: 274 NVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 + + + ++ P L+Y E ++I R IRD++ +D +++++ G+ Y ++++L+ P Sbjct: 544 TIEKRSTSTKVLAPQLLYSEPDMIVRIIRDVFNEDFTKLVIDGDGVYDTIHEYVELVAPD 603 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 V +Y +F + Q++ +V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 604 LVDRVERYTGDDDVFDHFRVSEQIEKALSRKVNLPSGGSLVIDRTEAMTVIDVNTGKFTG 663 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEE+ RQLRLRD+ G+IVVDFIDM + N V ++L E L +D Sbjct: 664 SGGNLEETVTKNNLEAAEEVIRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRD 723 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS---QSSVALSILRSV 507 R + QV +++ GL++M+R+RI + + ES G G + + R Sbjct: 724 RTKHQVAEVTSLGLVQMTRKRIGTGLAESLVAAGEDLSGRGLVLPGTEVDNSKQYKSRKK 783 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 + ++ + + + + ++ E + + + Sbjct: 784 RTRSNEKSSAKPSSNELTAIAAATMRSRQDENAEAQEEAPAQATDKETTVAQKPVADEQT 843 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + AP + D+ I K+E + + + Sbjct: 844 TTAQTQQTQEETQEAPPEAAPIVHAPGTVMIGDDTETKIQKAEPKKRPTVTPKEQRTEDT 903 Query: 628 IRKRR 632 ++ Sbjct: 904 TERKP 908 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 7 IDASHVEETRVVVLRDNRVEELDF-ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 I H T++VV D E E++ + + GN+YL KV V PS++AAFVD G R Sbjct: 361 IVREHDGRTQLVVTEDGIAVEHYLSEAKAQASLIGNVYLGKVQNVLPSMEAAFVDIGKGR 420 Query: 66 HGFLPFLEIHPD 77 + L E++ D Sbjct: 421 NAVLYAGEVNWD 432 >gi|323359799|ref|YP_004226195.1| ribonuclease G and E [Microbacterium testaceum StLB037] gi|323276170|dbj|BAJ76315.1| ribonuclease G and E [Microbacterium testaceum StLB037] Length = 871 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 113/350 (32%), Positives = 194/350 (55%), Gaps = 4/350 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +PN Sbjct: 359 GEVDWDGIDTGNQPRRIELALKSGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPNG 418 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + K +P GVI+RTA T+ ++ RD + L W+ Sbjct: 419 TMNG-ISRKLPDTERARLKK--ILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTSQWE 475 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +V AP L++ E +L+ + +RD++ +D + +++ G++ + +++ + P Sbjct: 476 HVSTQLKTIQAPALLHSEPDLLVKIVRDVFNEDFTRMLIQGDEALQTISNYLAGVAPDLL 535 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 V +YE F + Q++ +V LPS G ++I++TEA+ +DVN+G+ Sbjct: 536 ERVEKYEGDQDPFDAFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSG 595 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +DR Sbjct: 596 GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRT 655 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 + QV +++ GL++M+R+++ +LE+ ++ C C G G + V Sbjct: 656 KHQVAEVTSLGLVQMTRKKLGLGLLETFSEACEVCAGRGVVVHHDPVVRH 705 Score = 97.4 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++++ S ++ VL DN + E + GN+YL +V V PS++AAFVD G Sbjct: 291 RVMVVRSKAGRIQIAVLEDNVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAAFVDIGR 350 Query: 64 NRHGFLPFLEIHPD 77 R+ L E+ D Sbjct: 351 GRNAVLYSGEVDWD 364 >gi|311113740|ref|YP_003984962.1| ribonuclease [Rothia dentocariosa ATCC 17931] gi|310945234|gb|ADP41528.1| probable ribonuclease [Rothia dentocariosa ATCC 17931] Length = 1204 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 148/638 (23%), Positives = 256/638 (40%), Gaps = 26/638 (4%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ L+++ + V+ SL + + Sbjct: 427 DRQMLVRQKEGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 486 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G DV I+ +K +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 487 RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 546 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P S ISRK+ + + K + L P G GVI+RTA ++ E+ D Sbjct: 547 RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PDGAGVIVRTAAEGASEEELTHD 603 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ ++E A + ++Y+E +L+ + +RD++ +D + +IV G+ + + Sbjct: 604 INRLRAQWEEIQEKANSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIE 663 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P ++++ED +F I QL +V LPS G ++I++TEA+ + Sbjct: 664 AYVTYVAPDLLSRLQKWEDEDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 723 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 724 DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 783 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +L E L +DR + QV +++ GL++M+R+R+ + +LE ++ C C G G + ++ Sbjct: 784 RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEQCDSCGGRGLLVHDQPLSG 843 Query: 502 S-------ILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 I R + A +D V ++K+A E R + Sbjct: 844 RSGGASDFIHRQERTERKRSRAASRNNTRDAADGVDSEKDEKKA-----ERRNAM----A 894 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + +E K ++ E + S E Sbjct: 895 SIAAASHSADELEAEDQANRKKRKRRKRSRRTETAELSLEQEIQGIKAGAKAHREVSSRE 954 Query: 614 DIQDNIVSEE---STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 D + + G + R HDA + S + + Sbjct: 955 DKVAEVTETDWIGEQGDFTLEQLAGAFDRDLNPEHDARFTRESSRSEAIRAGEAKARASQ 1014 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 G + + E E+ Sbjct: 1015 KAGRITRSESGGFKSNQGDQSSAEQKSPRAERENLQVE 1052 Score = 87.7 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 ++ VL D + E + + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 439 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 498 Query: 75 HPD 77 + D Sbjct: 499 NWD 501 >gi|284054075|ref|ZP_06384285.1| ribonuclease [Arthrospira platensis str. Paraca] Length = 448 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 204/413 (49%), Gaps = 10/413 (2%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 +Q ++ E + + D++ V N + I + + ++ + Sbjct: 3 KQIIIAEQ--HRIAAVFSEDEIQELVVATGNQQVSDIYLGIVENVLPGIDAAFVNIGDPE 60 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + V P + + I E++ +Q +LVQ++KE G KG +T ++L GR Sbjct: 61 RNGFIHVSDLGPLRLKRSS---GSITELLMPQQKVLVQVMKEPTGTKGPRLTGNITLPGR 117 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMP +G +SR+I + +R L+ L P+GMG+++RT + I D Sbjct: 118 YLVLMP-YGRGVNLSRRIRSEAERNRLRA-LAILIKPSGMGLLVRTEAEGMAEDAILEDL 175 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 E L + W+ V++ A ++ P L+ + + I+R +RD+Y +++ I+V G + K + Sbjct: 176 EALQKQWEEVQQEATSTRPPALLNRDNDFIQRVLRDMYSTEVNRIVVDSADGIKRVKQHL 235 Query: 326 KLLMPSYARIVRQYEDPHPIF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 + + + + V LPS GY+II TEAL I Sbjct: 236 VNWSVGKTPQGVLIDHHRERIPILEYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSG TR +T L TN EAA EIARQLRLR++AG+I+VDFIDM+ +++ V + Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEH 355 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 + LK D++R Q+ +S GL+E++R+R ++ E + C C G G++ Sbjct: 356 FNKVLKADKSRPQIAQLSELGLVELTRKRQGQNIYELFGRSCPTCNGLGHLIH 408 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ V ++ ++EL Q +IYL V V P + AAFV Sbjct: 1 MSKQIII----AEQHRIAAVFSEDEIQELVV--ATGNQQVSDIYLGIVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVSDLGP 72 >gi|87125029|ref|ZP_01080876.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9917] gi|86167349|gb|EAQ68609.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. RS9917] Length = 655 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 168/324 (51%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P + +G ISR+ + Sbjct: 82 ITELLEPRQRVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRR-ISAEGE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++RT ++ + D E L+R W+ ++ A + P L+ Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEAEGISEELLIDDLEALLRQWEAIQRAAETATPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD ++ ++V F+ + Sbjct: 200 RDEDFIHRILRDHTGPELVRVVVDDPAAVERVSSFLGEEGANVLVESHPEPGELL--EHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I+VDFIDM+ +++ + + +++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIVDFIDMDSRRDQLQLLEYFTAAIRNDSARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 86.6 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|78211865|ref|YP_380644.1| RNAse E [Synechococcus sp. CC9605] gi|78196324|gb|ABB34089.1| ribonuclease, Rne/Rng family [Synechococcus sp. CC9605] Length = 646 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 180/324 (55%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P+ +G ISR+I++ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVNISRRISSDAER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT S ++ + D E L+R W+ +++ A + P L+ Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEADSISEELLIEDLESLLRQWEAIQQAAETAAPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D++ ++V F+ + V + +P + Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVEDAAAVGRVSSFLGADASNVL--VEAHSEPSELLEHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDM+ +++ + + +++ D AR Q+ +S GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEYFTTAVRDDSARPQIAQLSELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 87.0 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|260434465|ref|ZP_05788435.1| putative Ribonuclease E family protein [Synechococcus sp. WH 8109] gi|260412339|gb|EEX05635.1| putative Ribonuclease E family protein [Synechococcus sp. WH 8109] Length = 646 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P+ +G ISR+I++ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVNISRRISSDAER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT ++ + D E L+R W+ +++ A + P L+ Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEADGISEELLIEDLESLLRQWEAIQQAAETAAPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D++ ++V F+ + V + + + Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVDDAAAVGRVSSFLGAEAGNVL--VEAHSESSELLEHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDM+ +++ + + +++ D AR Q+ +S GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAVRDDSARPQIAQLSELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|218245924|ref|YP_002371295.1| Rne/Rng family ribonuclease [Cyanothece sp. PCC 8801] gi|257058972|ref|YP_003136860.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 8802] gi|218166402|gb|ACK65139.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 8801] gi|256589138|gb|ACV00025.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 8802] Length = 653 Score = 213 bits (542), Expect = 7e-53, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 205/467 (43%), Gaps = 22/467 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T ++L GRY VLMP R T+ Sbjct: 82 ITELLTPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLVLMPYGKGVNLSRRIKTDDERS 141 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L PAGMG+++RT + + I D E+L R W++++ A ++ P L+ Sbjct: 142 R--LRALAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQRQWESIQVQATSTRPPSLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346 + + I+R +RD+Y D++ I+V G + K + + + P+ Sbjct: 200 RDDDFIQRVLRDMYSGDVNRIVVDSPAGVKRVKQQLMTWSGGRSPEGVLIDHHRETLPVL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G+I+VDFIDM+ +++ + + ++L+ D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKTLRADKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSVALSILRSVEEYLLQYTAHNIIVH 522 ++R+R ++ E + C C G G++ +AL + + Sbjct: 380 LTRKRQGKNIYELFGQPCPNCGGLGHLVHLPGQSELIALETVTVAPPIPVAKPIEKPTEV 439 Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 + + + E L + + P Sbjct: 440 SEPFGESFFEEDMIDIPRQLEL-------------LHHPSYQEQGNIPNTRRRRRRQPQL 486 Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + ++ + E ++ + E T + R Sbjct: 487 KEESTSNPKVILSTPTKEVDYSTDTEVEPRKERTPRHLRREETPIER 533 Score = 76.9 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I E+ + + D +++EL Q G+IYL V V P + AAF Sbjct: 1 MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVGDIYLGLVENVIPGIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 V+ G R+GF+ ++ P Sbjct: 54 VNIGDAERNGFIHVTDLGP 72 >gi|333027124|ref|ZP_08455188.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071] gi|332746976|gb|EGJ77417.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071] Length = 1349 Score = 213 bits (542), Expect = 7e-53, Method: Composition-based stats. Identities = 117/335 (34%), Positives = 198/335 (59%), Gaps = 4/335 (1%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 610 YHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKL 668 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + VP GVI+RTA ++ E++RD E L W+++++ A Sbjct: 669 PDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKTGN 726 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 AP L+Y E ++ R +RD++ +D ++++VSG++ + ++ + P + ++ Sbjct: 727 APTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEV 786 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 787 DAFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRN 846 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 847 NLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSL 906 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 907 GLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 941 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D+ + E GN+YL KV V PS++AAF+D G Sbjct: 532 ERVMVVREQGERTQIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIG 591 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 592 KGRNAVLYAGEV 603 >gi|317129727|ref|YP_004096009.1| ribonuclease, Rne/Rng family [Bacillus cellulosilyticus DSM 2522] gi|315474675|gb|ADU31278.1| ribonuclease, Rne/Rng family [Bacillus cellulosilyticus DSM 2522] Length = 495 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 213/464 (45%), Gaps = 9/464 (1%) Query: 98 TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157 D++ V D + E +I + N + E + + Sbjct: 19 EDNKVVEWLFEQEDEHSRTSNVFIGRVEDIVPGMEAAFVNIGADKNGFLYRNELIAYDTL 78 Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 +D + +Q I ++K Q ++VQ+ KE G KG +T +SL G+Y V +P Sbjct: 79 KDDKEPDVKQPTIASMLKEGQSIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLP-YGNYV 137 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 +S+K+ + ++ + G+I+RT + EI +F L + + Sbjct: 138 AVSKKMNEENRKGWREK--AREWIEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQ 195 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 A P+++ + +LI R RD SEI+V + Y + + + Sbjct: 196 QAEKVNVPNVLLNQSSLISRVQRDYLTNKNSEIVVDHFESYEQLLNSSLEGCNIH----- 250 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 Y++ IF IE L+ +V L S G++II +TEAL IDVN+G+ T +H + D Sbjct: 251 LYQEKEDIFSYYDIEKHLEKALHEKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRD 310 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 T ++TN+EAA +A+QLRLR++ G+I++DFIDM+ + + +SV K LKE+ K DR V Sbjct: 311 TVVKTNIEAAYAVAQQLRLRNIGGIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVA 370 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 +NFGL+EM+R++ R + + + C+ CKG G + S S + R V L Sbjct: 371 GFTNFGLVEMTRKKARKPLHDIMMESCSVCKGTGQVLSLKSKIAHLEREVF-ALRYIDQD 429 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 I+V S V LL + E +I +V G Sbjct: 430 AILVEVDSAVYESLLQNNNDLLTSMEQVVNKTIYLVNGENGHLP 473 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 R VL DN+V E FE E + N+++ +V + P ++AAFV+ G +++GFL E+ Sbjct: 14 RGAVLEDNKVVEWLFEQEDEHSRTSNVFIGRVEDIVPGMEAAFVNIGADKNGFLYRNEL 72 >gi|15841967|ref|NP_337004.1| cytoplasmic axial filament protein, putative [Mycobacterium tuberculosis CDC1551] gi|13882240|gb|AAK46818.1| cytoplasmic axial filament protein, putative [Mycobacterium tuberculosis CDC1551] Length = 621 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 198/377 (52%), Gaps = 19/377 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 76 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 135 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ LKEI R + GVI+RTA + +I+ D L W+ Sbjct: 136 SSTG-ISRKLPDTERQR-LKEILREVVPS-DAGVIIRTASEGVKEDDIRADVARLRERWE 192 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A + YEE +++ + IRDL+ +D +IVSG++ + +++ + Sbjct: 193 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 252 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 253 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 312 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 313 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 372 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L ESL +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 373 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 432 Query: 499 -VALSILRSVEEYLLQY 514 A + R E + Sbjct: 433 DSAAATGRKSEPGARRG 449 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 19 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 78 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 79 NWDAAGLGGADRK 91 >gi|332670933|ref|YP_004453941.1| ribonuclease, Rne/Rng family [Cellulomonas fimi ATCC 484] gi|332339971|gb|AEE46554.1| ribonuclease, Rne/Rng family [Cellulomonas fimi ATCC 484] Length = 1127 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 115/346 (33%), Positives = 195/346 (56%), Gaps = 4/346 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY V +P Sbjct: 599 GEVNWDAAGLEGQPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVFVPGG 658 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + + K VP GVI+RTA ++ E++ D L W+ Sbjct: 659 GMTG-ISRKLPDTERNRLKK--ILREVVPDSAGVIVRTAAEGASEEELRADVARLQGQWE 715 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + + A + AP L+ E ++ R +RD++ D S ++V G++ + ++ L P A Sbjct: 716 AIEKKARTASAPALLQGEPDMAIRVVRDIFNDDFSALVVQGDEAWSTISSYIDELAPDLA 775 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 + V ++ +F ++ QL +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 776 QKVSKWTGTQDVFTVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSG 835 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 836 GTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRT 895 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 + QV +++ GL++M+R+R+ ++E+ ++ C +C G G+I Sbjct: 896 KHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCHGRGFIVHADP 941 Score = 97.4 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E ++ + + GN+YL +V V PS++AAFVD G R+ L E+ Sbjct: 542 TQIAVLEDGVLVEHYVSNQAQTSMVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV 601 Query: 75 HPD 77 + D Sbjct: 602 NWD 604 >gi|148238708|ref|YP_001224095.1| ribonucleases G and E [Synechococcus sp. WH 7803] gi|147847247|emb|CAK22798.1| Ribonucleases G and E [Synechococcus sp. WH 7803] Length = 646 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P + +G ISR+I++ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRRISSEGER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT ++ + D E L+R W+ +++ A + P L+ Sbjct: 141 NRLRA-LGVLVKPPGAGLLIRTEAEEVSEELLIDDLESLLRQWEAIQKAAETASPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD ++S ++V F+ + V + +P + Sbjct: 200 RDEDFIHRILRDHTDPELSRVVVDDPTAVERVSGFLGGDGAHVS--VEAHSEPDELLEHF 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I+VDFIDM+ +++ + + +++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIVDFIDMDSRRDQLQLLEHFTTAIRDDSARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D+RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDDRVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|228469622|ref|ZP_04054602.1| ribonuclease, Rne/Rng family [Porphyromonas uenonis 60-3] gi|228308815|gb|EEK17516.1| ribonuclease, Rne/Rng family [Porphyromonas uenonis 60-3] Length = 524 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 138/572 (24%), Positives = 247/572 (43%), Gaps = 67/572 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + VL D + EL + I+ Y Sbjct: 1 MNSELIIDVK-PKEVSMAVLEDGELVEL---RTENRNIR---Y----------------- 36 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +I LL E + + A ++ + + L Sbjct: 37 ---------AVGDI--------------LLGEVDNVVRGNNAAFVNIGPMKNGFLHYNDL 73 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +V E E D V E + I +K + Sbjct: 74 GKVFGATTHLLEDIAEKKKVPPIDKVKEGEPLPKDGN-----------IINSGLKKGDKI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LV++ +E G KG +++ LS+AGR+ VL+P + + S + + + Sbjct: 123 LVKVTREAFGTKGPSLSAELSIAGRFLVLVPFSDQVAISSEIRSTEERTR--LKTIVHSV 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + +G G I+RT A + E+ + L+ ++ + + + AP +YEE N IR Sbjct: 181 IKSGYGAIIRTQAAGKKTQELVEEMMDLIDRFETSIKKLVRAKAPTQIYEERNRAINLIR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY--EDPHPIFFRSGIEVQLDSL 358 D Y K ++I+V+ Y+E + ++ + P +IV Y + P+F G+ Q +L Sbjct: 241 DSYNKSFTKIVVNDPDYYKELRGYVADIDPGREQIVTLYEDDAKRPLFDACGVTKQKKTL 300 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLR 417 +VTL S +II QTEA+ IDVNS + R E+TA N+ A+ IARQ+RLR Sbjct: 301 FGRKVTLRSGANIIIEQTEAMHVIDVNSSKKARRTSGQEETAFDVNMAVADLIARQIRLR 360 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL G+IV+DFIDM E +N+ + + + + + DRA ++ +S FGL++++RQR+R + + Sbjct: 361 DLGGIIVIDFIDMNEAAHNKELYEHMVKLMANDRATHKILPLSKFGLMQITRQRVRQATI 420 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQ-- 534 T + C C+G G I++ + + + + N +H H VV Y+ Sbjct: 421 IRTEETCPTCQGTGKIKTSITFTDDLEEMIAQLTTGDKPIRNFAMHLHPYVVAYIKKAPL 480 Query: 535 -KRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +++ ++ +I ++ ++A I Sbjct: 481 LGSSLFTKWKKKYSKNIKLIEDQDVALLDCKI 512 >gi|218437054|ref|YP_002375383.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7424] gi|218169782|gb|ACK68515.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7424] Length = 645 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 126/494 (25%), Positives = 225/494 (45%), Gaps = 36/494 (7%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I +++ +Q +LVQ++KE GNKG +T ++L GRY VLMP +G +SR+I N +R Sbjct: 82 ITDLLAPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIRNDDER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P+GMG+++RT + + I D E L + W+ +++ A ++ P L+ Sbjct: 141 SRLRA-LAILVKPSGMGLLVRTEAEGKAEEAIIEDLETLQKQWELIQQQAASTRPPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + I+R +RD+Y D++ I+V + K + + + + + + Sbjct: 200 RDDDFIQRVLRDMYTSDVNRIVVDNPNSVKRVKQHLMGWSGGRSPEGVVIDHHRESQSVL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G+IVVDFIDM+ +++ + + ++LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVIVVDFIDMDSRRDQLKLLEHFNKALKADKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E + C C G G++ + +I + + Sbjct: 380 LTRKRQGKNIYELFGQPCHTCGGLGHLVHLPGESNAI------------SLETSSFSTPA 427 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 + L +K + ++ + + + Q Sbjct: 428 IATPRLPEKP--------------IIEPE-----PVYEAGFDEVDEGSQHLDLLYHPNYQ 468 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + ++ + ++ L I + + E RR R R + + Sbjct: 469 DQGLARRRRRRRSNDLVKEETGTKILPGIPERELDVEYESPREDRRDRSLRNQRRDEMSL 528 Query: 647 AGVVSDVSSIQNVI 660 V ++S ++ + Sbjct: 529 ERVSVEMSDLEQNV 542 Score = 75.0 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I H V +++++EL Q G+IYL V V P + AAFV+ Sbjct: 1 MPKQIIIAEQHHL---AAVFWEDQIQELVV--ATGNQQVGDIYLGLVENVIPGIDAAFVN 55 Query: 61 YG-GNRHGFLPFLEIHP 76 G R+GF+ ++ P Sbjct: 56 IGDAERNGFIHVTDLGP 72 >gi|154486651|ref|ZP_02028058.1| hypothetical protein BIFADO_00470 [Bifidobacterium adolescentis L2-32] gi|154084514|gb|EDN83559.1| hypothetical protein BIFADO_00470 [Bifidobacterium adolescentis L2-32] Length = 464 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 112/355 (31%), Positives = 194/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 49 GEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 108 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + + + P MGVI+RTA ++ I +D E L+R W+ Sbjct: 109 GMTGVSRKL---SERERARLKNIVSKIAPKDMGVIIRTAAEGASEEAITKDLENLVRQWE 165 Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ D S++IV G++ Y ++++ + P Sbjct: 166 RITAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAP 225 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 226 DLKDKLEKWDPAEHDGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 285 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR R +E+T + NLEAAEEIARQLRLRD+ G++++DF+DM N V ++L E Sbjct: 286 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 345 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 346 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTV 400 Score = 84.3 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 25 VEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 + E + GNIYL +V V PS++AAFVD G R+G L E++ D Sbjct: 2 LVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWD 54 >gi|86609280|ref|YP_478042.1| ribonuclease [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557822|gb|ABD02779.1| ribonuclease, Rne/Rng family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 723 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 142/530 (26%), Positives = 231/530 (43%), Gaps = 31/530 (5%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I E++ +Q +LVQ++KE GNKG +T L+ GRY VL P KG +SR+I + Sbjct: 79 HASISELVLPQQKVLVQVMKEPTGNKGPRLTGDLAFPGRYLVLRP-YGKGVHLSRRIEDR 137 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +R LK L P MG+++RT ++ + D E L +LW+++++ + P Sbjct: 138 EERNRLKS-LAILIKPPQMGLLVRTEAEGVSEEAMIDDLEQLKKLWEDIQQQYQAARGPG 196 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPH 343 L+ + + I+R +RD+Y D++ I+ G + + +++ V + +P Sbjct: 197 LLNRDDDFIQRVLRDVYSDDVNRIVTDSAAGAKRVRSYLQGWNKGQMPPGVVVDAHREPT 256 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 PI + + + V LPS GY+II TEAL IDVNSG T+ +T L TN Sbjct: 257 PILEYFRVNAVIRQALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTQSATSRETVLWTN 316 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 EAA EIARQLRLR++AG+IVVDFIDM+ +++ V + ++L D+AR QV +S G Sbjct: 317 CEAATEIARQLRLRNIAGVIVVDFIDMDSRRDQLLVLEHFNKALSSDKARPQVVQLSELG 376 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAG---YIRSQSSVALSILRSVEEYLLQYTAHNII 520 L+E++R+R S+ E C C+G G + L + S L A Sbjct: 377 LVELTRKRQGQSLYEIFGYSCPTCEGLGILARLPGAEPGHLLTIESGLTVTLPTEAEGGD 436 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALVN 576 ++ N +RA + V L+ + +P Q + Sbjct: 437 EEEAGPILPRDGNPQRARLR------------VGSDGLSRGDSRALLRRSRSAPGQRRPS 484 Query: 577 TGHKVGSD--SQAPSYDKNIECVWQD--EALLPIPKSESLEDIQDNIVSEES---TGVIR 629 SD + P + + +D + D + E G Sbjct: 485 PDPFTTSDDLEEEPRVETGRKRPREDWGDPRTGQRLVARSLDTPVEEEAPEPMQLPGGGA 544 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 +R+ RR + ++ D +S + S E + Sbjct: 545 DLKRQEPRRSGPGEEAESASRKDHTSPARTVRASGTESSEGRPAPVRQTV 594 Score = 77.3 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ RV V +++V+EL S G++Y+ + V PS+ AAFV Sbjct: 1 MPRQIVI----AEQHRVAAVFAEDQVQELIVASGAH--QVGDVYVGIIENVLPSIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGPAERNGFIHVSDLGP 72 >gi|19553563|ref|NP_601565.1| ribonuclease E [Corynebacterium glutamicum ATCC 13032] gi|62391207|ref|YP_226609.1| ribonuclease E protein [Corynebacterium glutamicum ATCC 13032] gi|41326547|emb|CAF21029.1| PROBABLE RIBONUCLEASE E (RNASE E) PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 1021 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 141/576 (24%), Positives = 243/576 (42%), Gaps = 52/576 (9%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 342 GEVDWKAAGLGGRGRRIEQALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPG- 400 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ LKEI + G G I+RTA ++ I D L LW+ Sbjct: 401 GRSAGISRKLPGPERKR-LKEILGRVVPAQG-GTIIRTAAEGVSEENIAADVNRLHTLWE 458 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++E +YEE +++ + IRDL+ +D + +IV G++ + + +++ + Sbjct: 459 QIKERTAEEKKSRGSKPITMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSV 518 Query: 329 MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P V + F + QL+ +V LPS G +II++TEA+ IDV Sbjct: 519 APDLVSRVEHFNRADFDGKDAFEAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDV 578 Query: 385 NSGRSTR--EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 N+GR T +E+T N+EAAEEI RQ+RLRDL G+IVVDFIDM +N V ++ Sbjct: 579 NTGRYTGKGGGNLEETVTLNNIEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRR 638 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L E+L+ DR R QV +++ GL++M+R+RI + +LE+ + C +C+G G I V Sbjct: 639 LNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTV 698 Query: 503 ILR-------SVEEYLLQYTAHNIIVHTHSDVVLY-LLNQKRATIVEYEARFGVSI---- 550 R + + + V + L+ + + S+ Sbjct: 699 DERVEAKAEERSRRHQRSNSTNKAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLD 758 Query: 551 ----------------NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 ++ + + + + + A Sbjct: 759 DSDLDDVVNDKLDEPERILAESTVEPEEGPRRRARRQRQESAADDIAAIAAAAVDIASEE 818 Query: 595 ECVW----------QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 + + E + P+ + + + E++ RRRR+ R + Sbjct: 819 DPDEPSGSSYVSDFEAEPIAPVVEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRS 878 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 A D + + + ++ + E Sbjct: 879 DHAPKPEDFAPVVEEVAETPVKTPARKAPRRNRPSE 914 Score = 87.3 bits (214), Expect = 7e-15, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%) Query: 1 MANKMLIDAS----HVE-ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55 M +M++ H T+V VL D+++ E S+ + + GNIYL +V V PS++ Sbjct: 266 MERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTSDAQMSMVGNIYLGRVQNVLPSME 325 Query: 56 AAFVDYGGNRHGFLPFLEI 74 AAF+D G R+G L E+ Sbjct: 326 AAFIDIGKGRNGVLYAGEV 344 >gi|148243276|ref|YP_001228433.1| ribonucleases G and E [Synechococcus sp. RCC307] gi|147851586|emb|CAK29080.1| Ribonucleases G and E [Synechococcus sp. RCC307] Length = 642 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 111/324 (34%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T LSL GR+ VL P+ +G +SR+ Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLSLPGRFLVLQPH-GQGVNVSRR-IGAETE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++RT ++ +I D E L+R W+ +++ A + P L+ Sbjct: 140 RNRLRALAVLIKPPGTGLLVRTEADGVSEEQIIDDLESLLRQWEAIQQAAETAHPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RDLY D+ ++V E F+ + V +ED I Sbjct: 200 RDEDFIHRVLRDLYSTDVLRVVVDSEDAVARVNRFLGPDQANLI--VEHHEDASEILEHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL +DVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVVDVNSGSFTRSANARETVLWTNCEAATE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G++++DFIDME +++ + + ++++ D+AR Q+ I+ GL+E++R Sbjct: 318 IARQLKLRNIGGVVIIDFIDMESRRDQLMLLEHFTQAMRDDQARPQIAQITELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLNDERVDELIV--AQGRHQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHITDLGP 72 >gi|229820110|ref|YP_002881636.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333] gi|229566023|gb|ACQ79874.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333] Length = 944 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 122/366 (33%), Positives = 203/366 (55%), Gaps = 14/366 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + + +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P+ Sbjct: 442 GEVNWDAAGLEGQPRRIEQALSSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPSG 501 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + K VP G GVI+RTA ++ E++RD E L + W Sbjct: 502 AMTG-ISRKLPDTERARLKK--LLKEIVPDGQGVIVRTAAEGASEDELRRDVERLTKQWA 558 Query: 274 NVR----------ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 +++ AP L+ E L R +RD++ +D S + VSG++ + D Sbjct: 559 DIQTKVNGSGGTGRKPQKVTAPALLKGEPELALRVVRDVFNEDFSSLTVSGDEAWHTISD 618 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 ++ + P A+ + + D +F R I+ QL +V LPS G ++I++TEA+ +D Sbjct: 619 YLTTVAPDLAQRLTHWTDDADVFARFRIDEQLAKGLDRKVWLPSGGSLVIDRTEAMTVVD 678 Query: 384 VNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 VN+G+ T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++ Sbjct: 679 VNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRR 738 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L E L +DR R QV +++ GL++M+R+R+ ++E+ ++ C +C G G++ Sbjct: 739 LIECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCHGRGFVVHTEPFEAQ 798 Query: 503 ILRSVE 508 + E Sbjct: 799 PVAEEE 804 Score = 98.1 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + + + GN+YL +V V PS++AAFVD G R+ L E+ Sbjct: 385 TQIAVLEDGVLVEHYVARKQQSSMVGNVYLGRVQNVLPSMEAAFVDLGKGRNAVLYAGEV 444 Query: 75 HPD 77 + D Sbjct: 445 NWD 447 >gi|229493246|ref|ZP_04387038.1| possible ribonuclease E Rne [Rhodococcus erythropolis SK121] gi|229319977|gb|EEN85806.1| possible ribonuclease E Rne [Rhodococcus erythropolis SK121] Length = 1081 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 140/554 (25%), Positives = 239/554 (43%), Gaps = 42/554 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 508 GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 566 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272 ISRK+ + ++ LKEI R + GVI+RTA ++ E+ RD L W Sbjct: 567 GTSTGISRKLPDTERKR-LKEILRDIVPA-DAGVIIRTASEGVSEEELARDVTRLQAQWA 624 Query: 273 ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 S P +YEE +++ + IRDL+ +D S++++ GEK + ++++ + Sbjct: 625 GIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFNEDFSKLVIEGEKAHTTVENYINSV 684 Query: 329 MPSYARIVRQYEDP--HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 P + +Y +F I+ QL +V LPS G ++I++TEA+ +DVN+ Sbjct: 685 APDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 744 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 G+ T +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E Sbjct: 745 GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 804 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 L +DR R QV +++ GL++M+R+++ + ++E+ + C +C G G I V + Sbjct: 805 CLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHSEPVEVKSSD 864 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + KR + + Sbjct: 865 DGGSRSGSQRSDSGTS----------RKNKRG---------------RGDKSASTE---- 895 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 G A P D+ + ES D ++++ Sbjct: 896 SNGQEAPAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSIES--DSAGTSSGDDAS 953 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +++ R A +HHD VV + + +D+ + + Sbjct: 954 KSADRQQDRPIDTPAAAEHHDVPVVDSAAEEVSAVDNESAAASTEATPRGRRRSRRASRA 1013 Query: 686 FTENYDVSIPPVST 699 + + P V T Sbjct: 1014 ASAPVAEAAPEVGT 1027 Score = 96.2 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E + + GN+YL +V V PS++AAF+D G R+G L E+ Sbjct: 451 TQVAVLEDGVLVEHFVTNSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 510 Query: 75 HPD 77 + + Sbjct: 511 NWE 513 >gi|89895913|ref|YP_519400.1| hypothetical protein DSY3167 [Desulfitobacterium hafniense Y51] gi|89335361|dbj|BAE84956.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 411 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 184/338 (54%), Gaps = 3/338 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 ED + +++V+K RQ LL Q+ KE G+KGA +TT L++ GRY+VLMPNT Sbjct: 77 YEEDERLPPSNELRVEQVLKPRQELLAQVTKEPVGSKGARITTNLTIPGRYAVLMPNTKY 136 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + P G+I+RT E+ DF L+ LW+ + Sbjct: 137 IGVSRKITEEAERTR--LREIAREACPEDKGIIVRTLAKGIEAKELAADFRELVALWERL 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + + P LV+++ +L+ RAIRD +++ I V+ + ++ ++ L Sbjct: 195 EKKIPHVSIPGLVHQDVDLVSRAIRDWVDQEVKIITVNQPEVAEGMRNALRELGHPAVNH 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 V+ IF GI+ ++ Q +V L S GY++I QTEAL IDVN+G+ + + Sbjct: 255 VQLV-YKEDIFSDYGIDDKIRQALQPKVWLKSGGYLVIQQTEALTVIDVNTGKYVGDKSL 313 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT L N EAA EIARQLRLR+L G+IV+DFIDM +++ + + L++++ +D+ + Q Sbjct: 314 QDTILHINQEAALEIARQLRLRNLGGIIVIDFIDMASEEDKEQLLQVLEKAVARDKLKCQ 373 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 V ++ GL+EM+R+++ ++ C +C G+G I Sbjct: 374 VMGLTQLGLVEMTRKKVGQTLEVRYGHPCPHCDGSGKI 411 Score = 97.0 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 R VL D + E+ E ++ GNIY +V V P +QAAFVD G ++ +L + Sbjct: 14 RAAVLEDGELVEVYEEEGLISRLVGNIYRGRVINVLPGMQAAFVDIGLEKNAYLYVGDAV 73 Query: 76 PDYY 79 P Y Sbjct: 74 PFQY 77 >gi|219670345|ref|YP_002460780.1| ribonuclease, Rne/Rng family [Desulfitobacterium hafniense DCB-2] gi|219540605|gb|ACL22344.1| ribonuclease, Rne/Rng family [Desulfitobacterium hafniense DCB-2] Length = 411 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 112/338 (33%), Positives = 185/338 (54%), Gaps = 3/338 (0%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 ED + +++V+K RQ LL Q+ KE G+KGA +TT L++ GRY+VLMPNT Sbjct: 77 YEEDERLPPSNELRVEQVLKPRQELLAQVTKEPVGSKGARITTNLTIPGRYAVLMPNTKY 136 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + P G+I+RT E+ DF L+ LW+ + Sbjct: 137 IGVSRKITEEAERTR--LREIAREACPEDKGIIVRTLAKGIEAKELATDFRELVALWERL 194 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + + P LV+++ +L+ RAIRD +++ I V+ + ++ ++ L A Sbjct: 195 EKKIPHVSIPGLVHQDVDLVSRAIRDWVDQEVKIITVNQPEVAEGMRNALRELGHPAANH 254 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 V+ IF GI+ ++ Q +V L S GY++I QTEAL IDVN+G+ + + Sbjct: 255 VQLV-YKEDIFSDYGIDDKIRQALQPKVWLKSGGYLVIQQTEALTVIDVNTGKYVGDKSL 313 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 +DT L N EAA EIARQLRLR+L G+IV+DFIDM +++ + + L++++ +D+ + Q Sbjct: 314 QDTILHINQEAALEIARQLRLRNLGGIIVIDFIDMTSEEDKEQLLQVLEKAVARDKLKCQ 373 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 V ++ GL+EM+R+++ ++ C +C G+G I Sbjct: 374 VMGLTQLGLVEMTRKKVGQTLEVRYGHPCPHCDGSGKI 411 Score = 95.8 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 R VL D + E+ E ++ GNIY +V V P +QAAF+D G ++ +L + Sbjct: 14 RAAVLEDGELVEVYEEEGLISRLVGNIYRGRVINVLPGMQAAFIDIGLEKNAYLYVGDAV 73 Query: 76 PDYY 79 P Y Sbjct: 74 PFQY 77 >gi|22298140|ref|NP_681387.1| ribonuclease E [Thermosynechococcus elongatus BP-1] gi|22294319|dbj|BAC08149.1| ribonuclease E [Thermosynechococcus elongatus BP-1] Length = 668 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 120/328 (36%), Positives = 191/328 (58%), Gaps = 4/328 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T +SL GRY VLMP +G +SR+ITN +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGTKGPRLTGNISLPGRYLVLMP-YGRGVNLSRRITNEAER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT ++ I D E L R W+ +++ A S P L+ Sbjct: 141 HRLRA-LGILVKPAGMGLLVRTEAEGVSEEAILEDLELLQRQWETIQQQAAASRPPQLLG 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYAR--IVRQYEDPHPIFF 347 + + I++ +RD+Y D++ I+V G + K +K + ++ +++P PI Sbjct: 200 RDDDFIQKVLRDVYSSDVNRIVVDTPDGVKRVKQHLKNWNVNRPVGVLIDYHQEPIPILD 259 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 + + + V LPS GY+II TEAL IDVNSG T +T L TN EAA Sbjct: 260 YFRVNAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSGSFTSSATSRETVLWTNCEAA 319 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 EIARQLRLR++AG+I+VDFIDM+ +++ + + ++L+ D+AR Q+ +S GL+E+ Sbjct: 320 TEIARQLRLRNIAGVIIVDFIDMDSRRDQLLLLEHFSKALRADKARPQIAQLSELGLVEL 379 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRS 495 +R+R ++ E + C+ C G G++ Sbjct: 380 TRKRQGQNIYELFGRPCSACGGLGHLVH 407 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I EE R V +++++EL + G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEEHRLAAVFAEDQIQELIVATGTH--QVGDIYLGVVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G +R+GF+ ++ P Sbjct: 55 NLGDASRNGFIHVSDLGP 72 >gi|134097992|ref|YP_001103653.1| ribonuclease [Saccharopolyspora erythraea NRRL 2338] gi|133910615|emb|CAM00728.1| ribonuclease, Rne/Rng family [Saccharopolyspora erythraea NRRL 2338] Length = 1075 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 135/552 (24%), Positives = 238/552 (43%), Gaps = 8/552 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + +LVQ+ K+ G+KGA +TT +SL GR+ V +P Sbjct: 471 GEVDWDAAGLAGKARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPGG 530 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ + VP GVI+RTA ++ + RD L W+ Sbjct: 531 G-ATGISRKLPDNERKR--LKEILKRIVPENAGVIIRTASEGTSEEALDRDVRRLQAQWE 587 Query: 274 NVREL--ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 ++E + + AP L+YEE +L+ + +RDL+ +D S + V G + + + ++K + P Sbjct: 588 VIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWDTIEAYVKHVAPD 647 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 A + ++ + +F I Q+ +V LPS GY++I++TEA+ IDVN+G+ T Sbjct: 648 LAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTG 707 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +D Sbjct: 708 SGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRD 767 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS--VALSILRSVE 508 R R QV +++ GL++M+R+R+ + +LE+ + C +C+G G + S A + Sbjct: 768 RTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTDPVTHAHTNGSGGG 827 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 + + V+ A + +K Sbjct: 828 GGGGRRNRNRGKSQEPETPVVEAAPAAEPEAKAEPAAEAPKPEKQEKPQKQEKAERKAAA 887 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + Q + + ++ P + E V E E Q + + V Sbjct: 888 AAEQPVRADKAPEPAKAEQPVEAERAEPVKATEPAPAPEAVEEPVAEQPEAAAPAAEPVR 947 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + A S+ + + ++ E Sbjct: 948 ASQPEEAAPTPASQPEPAAEESSEPAVNGRARRRKVSRPAGSAGAPAAPVVVAVPAKPAE 1007 Query: 689 NYDVSIPPVSTP 700 + + V + Sbjct: 1008 SSESQDNGVPST 1019 Score = 95.4 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 + ++T++ VL DN + E S + GN+YL +V V PS++AAFVD G R+ L Sbjct: 410 NGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLY 469 Query: 71 FLEIHPD 77 E+ D Sbjct: 470 AGEVDWD 476 >gi|172035193|ref|YP_001801694.1| ribonuclease E [Cyanothece sp. ATCC 51142] gi|171696647|gb|ACB49628.1| ribonuclease E [Cyanothece sp. ATCC 51142] Length = 671 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 139/549 (25%), Positives = 232/549 (42%), Gaps = 37/549 (6%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE GNKG +T +SL GRY VLMPN KG +SR+I N +R Sbjct: 82 ITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMPN-GKGVNLSRRIRNDDER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E+L R W++++ A ++ AP L+ Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQRQWESIQVQATSTRAPSLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346 + + I+R +RD+Y D++ I+V G + K + + Sbjct: 200 RDDDFIQRVLRDMYSADVNRIVVDNPSGVKRVKHHLMNWSGGRPPEGVLIDHHRESMSIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAVREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G+I+VDFIDM+ +++ + + ++LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKVDKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E + C C G G++ + + + + + Sbjct: 380 LTRKRQGKNIYELFGQPCPQCGGLGHLAHLP----------------GESQLVALESAAT 423 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 L + T E V+ F E L H + Sbjct: 424 TPLPVPAPTPVTPKPIEKPLEVN-----DSGWDSP-FEDEDSDNSDQLELLHHPSYQEQN 477 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + + ++ ++ ++S ++ + + RR R R + Sbjct: 478 SNANNRRRRRRQTPNLVIKEDSTKSSSNVGIKETDDNNNESGNDNRRERLPRHLRREEGP 537 Query: 647 AGVVSDVSSIQNV----------IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 VS + + + +P + G T + P Sbjct: 538 VERVSVEMTPLEQDVYALMGISPLVRVDKEFKDPKSVVVSVKSPEGIERKTIEKTSATTP 597 Query: 697 VSTPEMESS 705 + Sbjct: 598 ETQTPTSEE 606 Score = 70.8 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%) Query: 1 MANKMLIDASHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M +++I E+ + + D +++EL Q +I+L V V P + AAF Sbjct: 1 MPKQIII----AEQHHIAAVFWED-QIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAF 53 Query: 59 VDYG-GNRHGFLPFLEIHP 76 V+ G R+GF+ ++ P Sbjct: 54 VNIGDAERNGFIHVTDLGP 72 >gi|113953943|ref|YP_729606.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. CC9311] gi|113881294|gb|ABI46252.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. CC9311] Length = 667 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 107/324 (33%), Positives = 173/324 (53%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P + +G ISR+ Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISRR-IGSEGE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++RT ++ + D E L+R W+ +++ + + P L+ Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEADGISEELLIDDLESLLRQWEAIQKASEAASPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D+ ++V + F+ V + +P + Sbjct: 200 RDEDFIHRILRDHTGLDLDRVVVESPAAVERVRSFLGDEGSHVV--VEAHPEPSELLEDY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNGAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR++ G+I+VDFIDM+ +++ + + +++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLRLRNIGGVIIVDFIDMDSRRDQLQLLEHFTGAIRDDAARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 82.7 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D V+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDECVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|282861864|ref|ZP_06270928.1| ribonuclease, Rne/Rng family [Streptomyces sp. ACTE] gi|282563680|gb|EFB69218.1| ribonuclease, Rne/Rng family [Streptomyces sp. ACTE] Length = 1127 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 123/348 (35%), Positives = 200/348 (57%), Gaps = 7/348 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 437 GEVNFEALGMAHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 496 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L WD Sbjct: 497 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWD 553 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +++ +S AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P Sbjct: 554 EIQQKAKGTTSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSQVAP 613 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + + ++ +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T Sbjct: 614 DLSDRLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFT 673 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + +E+T + NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L + Sbjct: 674 GQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 733 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 DR + QV +++ GL++M+R+R+ +LES ++ C +C G G I Sbjct: 734 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 781 Score = 91.2 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 368 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 427 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 428 KGRNAVLYAGEV 439 >gi|209527546|ref|ZP_03276048.1| ribonuclease, Rne/Rng family [Arthrospira maxima CS-328] gi|209492034|gb|EDZ92387.1| ribonuclease, Rne/Rng family [Arthrospira maxima CS-328] Length = 748 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 136/574 (23%), Positives = 237/574 (41%), Gaps = 10/574 (1%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 +Q ++ E + + D++ V N + I + + ++ + Sbjct: 3 KQIIIAEQ--HRIAAVFSEDEIQELVVATGNQQVSDIYLGIVENVLPGIDAAFVNIGDPE 60 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + V P + + I E++ +Q +LVQ++KE G KG +T ++L GR Sbjct: 61 RNGFIHVSDLGPLRLKRSS---GSITELLMPQQKVLVQVMKEPTGTKGPRLTGNITLPGR 117 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMP +G +SR+I +R L+ L P+GMG+++RT + I D Sbjct: 118 YLVLMPF-GRGVNLSRRIRLETERNRLRA-LAILIKPSGMGLLVRTEAEGMAEDAILEDL 175 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 E L + W+ +++ A ++ P L+ + + I+R +RD+Y +++ I+V G R K + Sbjct: 176 EALQKQWEEIQQEATSTRPPALLNRDNDFIQRVLRDMYSTEVNRIVVDSADGIRRVKQHL 235 Query: 326 KLLMPSYARIVRQYEDPHPIF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 + + + + V LPS GY+II TEAL I Sbjct: 236 VNWSVGKTPQGVLIDHHRERIPILEYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSG TR +T L TN EAA EIARQLRLR++AG+I+VDFIDM+ +++ V + Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEH 355 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 + LK D++R Q+ +S GL+E++R+R ++ E + C C G G++ + + Sbjct: 356 FNKVLKADKSRPQIAQLSELGLVELTRKRQGQNIYELFGRSCPTCNGLGHLIHLPGESAA 415 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 E + L Q+ + + + E+ Sbjct: 416 DSAEASERFMVSPKSLSNPPGFDTGTRTALGQETRRVQTLSSASSTEPLMRDDSEMVSGE 475 Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 P L+N + + + E L+ + + Sbjct: 476 LDTGGNFPELELLNHPSYQDIGGGSNIRRRRRRRIGDIEPLVKGEEGNRSIRVNSANTYN 535 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 ++T R+ T+ V SD Sbjct: 536 DTTRTEANTDVLLNDRQELTERFPKSVKSDSIKA 569 Score = 87.3 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ V ++ ++EL Q +IYL V V P + AAFV Sbjct: 1 MSKQIII----AEQHRIAAVFSEDEIQELVV--ATGNQQVSDIYLGIVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVSDLGP 72 >gi|119510874|ref|ZP_01629998.1| Ribonuclease E and G [Nodularia spumigena CCY9414] gi|119464483|gb|EAW45396.1| Ribonuclease E and G [Nodularia spumigena CCY9414] Length = 723 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 119/327 (36%), Positives = 184/327 (56%), Gaps = 5/327 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++ GRY VLMP +G +SR+I + +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITSPGRYVVLMP-YGRGVNLSRRIKSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ +++ A ++ AP L+ Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGKPEEAIIEDLELLQKQWEAIQQEAHSTRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346 + + I+R +RD+Y D++ I+V G + K +++ + PI Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKHYLQNWSGGQTPQGVLIDHHRDRSPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I + + V LPS GY+II TEAL +DVNSG TR +T L TN EA Sbjct: 260 EYFRISAAIKEALKPRVDLPSGGYIIIEPTEALTVVDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+IVVDFIDME +++ V + +LK D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNYALKADKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI 493 ++R+R ++ E C C G G+I Sbjct: 380 LTRKRQGQNIYELFGHTCPTCGGLGHI 406 Score = 78.5 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ ++ V +++++EL + H G++YL V V P + AAFV Sbjct: 1 MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDVYLGVVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVTDLGP 72 >gi|15827770|ref|NP_302033.1| ribonuclease [Mycobacterium leprae TN] gi|221230247|ref|YP_002503663.1| putative ribonuclease [Mycobacterium leprae Br4923] gi|13093322|emb|CAC30418.1| possible ribonuclease [Mycobacterium leprae] gi|219933354|emb|CAR71562.1| possible ribonuclease [Mycobacterium leprae Br4923] Length = 924 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 116/381 (30%), Positives = 195/381 (51%), Gaps = 19/381 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 390 GEVNWEAAGLGGADRKIEQALKPGDYIVVQVNKDPVGHKGARLTTQVSLAGRYLVYVPGA 449 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP GVI+RTA + +I++D L W+ Sbjct: 450 SSTG-ISRKLPDTERQR--LKEILREVVPPDAGVIIRTASEGVKEEDIRKDVTRLQEHWE 506 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + + YEE +++ + IRDL+ D S ++VSG++ + +++ + Sbjct: 507 QIEAKTIQTKEKAAGAAVALYEEPDVLVKVIRDLFNDDFSGLVVSGDEAWNTINEYVNSV 566 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +Y+ P F I+ QL +V LPS G ++I++TEA+ Sbjct: 567 APELVSKLTKYDPPIGPDGQHGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 626 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 627 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 686 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 ++L E L +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 687 LRRLTEVLARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCTGRGILLHTDPA 746 Query: 500 AL--SILRSVEEYLLQYTAHN 518 + R E + Sbjct: 747 NSTPMVGRKSESGGRRSKRSK 767 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 333 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 392 Query: 75 HPDYYQIPFSDRQ 87 + + + +DR+ Sbjct: 393 NWEAAGLGGADRK 405 >gi|158320783|ref|YP_001513290.1| ribonuclease [Alkaliphilus oremlandii OhILAs] gi|158140982|gb|ABW19294.1| ribonuclease, Rne/Rng family [Alkaliphilus oremlandii OhILAs] Length = 501 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 147/482 (30%), Positives = 254/482 (52%), Gaps = 11/482 (2%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 +R A+L++ + + E + G++ ++ A E+ Sbjct: 11 SENRLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDIGLEK------- 63 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 + V+D G + R+ I++V+K Q ++VQ++KE +KGA VTT ++L Sbjct: 64 -NCFLYVKDALGQEYFNKKDFVDREISIKDVVKQGQEIIVQVIKEPIADKGARVTTNITL 122 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 GRY VLMP+T + +SRKI + +R+ LK L+ MGVILRT ++K + + Sbjct: 123 PGRYLVLMPDT-QYIGVSRKIGSAEERERLKAEIEALKPE-NMGVILRTVAEGKSKDDFR 180 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 D ++L++LW + + AP L+Y++ +LI + IRD + K+I E I++ E Y+ A Sbjct: 181 EDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENEYKSAM 240 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 D ++LL P+ + +E+ H IF IE Q+ + ++ L S GY++I+ TEAL + Sbjct: 241 DLVELLSPNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTEALTVV 300 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVN+G+ +EDT L+TNLEAA EIA+QLRLRD+ G+I++DFIDM +++ + V Sbjct: 301 DVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQKVLNL 360 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L++SL KDR + ++ ++ GL+EM+R+++R + K C C G+G + ++ ++ Sbjct: 361 LEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEYTLLQR 420 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 + + L + +I H + ++ T E E V +V L Sbjct: 421 FEKEMRRIALHTSCEAVIFEVHP-TAFKIFEEEFITRKEIEGLTKVQSFIVPNPSLNFDD 479 Query: 563 FY 564 Sbjct: 480 LK 481 Score = 111 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N++++D E R+ +L D + EL E + K+I GNIY +V V P +QAAFVD G Sbjct: 2 NQIIVDVGISEN-RLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDIG 60 Query: 63 GNRHGFLPFLE-IHPDYY-QIPFSDRQALLKESNIAQTD 99 ++ FL + + +Y+ + F DR+ +K+ + Sbjct: 61 LEKNCFLYVKDALGQEYFNKKDFVDREISIKDVVKQGQE 99 >gi|225351141|ref|ZP_03742164.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158597|gb|EEG71839.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 455 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 195/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 43 GEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 102 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA ++ I +D E L+R W+ Sbjct: 103 GMTGVSRKL---SERERSRLKNIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWE 159 Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ D S++IV G++ Y ++++ + P Sbjct: 160 RITSKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAP 219 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 220 DLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 279 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR R +E+T + NLEA+EEIARQLRLRD+ G++++DF+DM N V ++L E Sbjct: 280 GRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 339 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 340 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTV 394 Score = 78.5 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 26/39 (66%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 GNIYL +V V PS++AAFVD G R+G L E++ D Sbjct: 10 VGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWD 48 >gi|325954784|ref|YP_004238444.1| ribonuclease, Rne/Rng family [Weeksella virosa DSM 16922] gi|323437402|gb|ADX67866.1| ribonuclease, Rne/Rng family [Weeksella virosa DSM 16922] Length = 522 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 143/569 (25%), Positives = 246/569 (43%), Gaps = 68/569 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I ++ ++ R+ VL D R+ EL +S ++ Sbjct: 1 MNKELVI-STEGQDVRIAVLEDGRLMELHQDSSNQ------------------------- 34 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 GF +I+ L K +A + + D D + Sbjct: 35 ------GF-AVGDIY-------------LGKIKKLAPSLNACFVDIGYSKDAFLHYHDLG 74 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 ++ FS + N K + I +V + + Sbjct: 75 PQIRSSFKFSH------------LSMKNKHQTHWLKHFKTEKDINKDGSIADVFQPGDSV 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +VQI KE KG +T+ +S+AGRY VL+P +++ + + L Sbjct: 123 MVQITKEPIHTKGPRITSEISIAGRYIVLVPFSNRVSISQKIKNKEERERLL--GILEAI 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G GVI+RT + E++ D YL+ W V + + AP L+ +E + +R Sbjct: 181 KPEGFGVIIRTVAEEKNTEELQDDLNYLLNKWKVVHRNLVKNTAPALILDEMDRASSILR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH-PIFFRSGIEVQLDSLH 359 D + D +I V E Y + +D++K + P +IV+ YEDP PIF + IE Q+ Sbjct: 241 DNFNDDFIKISVDDESLYNDMRDYLKYIAPDKIKIVKLYEDPIVPIFEKYNIERQIKLAF 300 Query: 360 QTEVTLPS--RGYVIINQTEALVSIDVNSGR-STREHCIEDTALQTNLEAAEEIARQLRL 416 VT+P Y++I TEAL IDVNSG S ED+A N AA EIARQL+L Sbjct: 301 GRTVTIPQSKGAYLVIEHTEALHVIDVNSGNISRNSRNQEDSAFTVNKVAATEIARQLKL 360 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 RD+ G++V+DFIDM ++ + + + L+ ++KD+A+ ++ S FGL++++RQR+R + Sbjct: 361 RDMGGIVVIDFIDMTSAEHKKQLFEHLRSEMQKDKAKHKILPPSRFGLIQITRQRVRPEL 420 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQ 534 +TT+ I + + I ++++ + + + +H H V YL Sbjct: 421 NYTTTEENPNHDDE--IEAPIVLIDRINQTLQGIVDRKDKDLSKMSLHVHPFVAAYLKQG 478 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLF 563 + +++ R+ I +V F Sbjct: 479 IPSIQMKWFMRYKKWIKIVPRDAYKYLQF 507 >gi|320010838|gb|ADW05688.1| ribonuclease, Rne/Rng family [Streptomyces flavogriseus ATCC 33331] Length = 1397 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 124/348 (35%), Positives = 201/348 (57%), Gaps = 7/348 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 717 GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 776 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L + W+ Sbjct: 777 SMTG-ISRKLPDTERAR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWE 833 Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 +++ A N S AP L+Y E ++ R +RD++ +D S++IVSG+ + ++ + P Sbjct: 834 EIQKKAKNTSSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAP 893 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ +F I+ QL +V LPS G ++I++TEA+V +DVN+G+ T Sbjct: 894 DLTDRLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFT 953 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + +E+T + NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L + Sbjct: 954 GQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 1013 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 DR + QV +++ GL++M+R+R+ +LES ++ C +C G G I Sbjct: 1014 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 1061 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 648 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 707 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 708 KGRNAVLYAGEV 719 >gi|33866677|ref|NP_898236.1| ribonuclease E [Synechococcus sp. WH 8102] gi|33633455|emb|CAE08660.1| ribonuclease E [Synechococcus sp. WH 8102] Length = 663 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 177/324 (54%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P+ +G ISR+I++ +R Sbjct: 95 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GQGVNISRRISSEAER 153 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT + ++ D E L+R W+ +++ A + P L+ Sbjct: 154 NRLRA-LGVLIKPPGAGLLIRTEADGIAEDQLIDDLESLLRQWEAIQQAAETAAPPVLLN 212 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D+ ++V F+ V + +P + Sbjct: 213 RDEDFINRILRDHTSTDLVRVVVDEPAAVARVSSFLGAEADKVL--VEAHSEPSELLEHF 270 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 271 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 330 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDM+ +++ + + +++ D AR Q+ ++ GL+E++R Sbjct: 331 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAVRDDAARPQIAQLTELGLVELTR 390 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 391 KRQGQNIYELFGRACPSCGGLGHV 414 Score = 86.6 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 14 MPQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 67 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 68 NIGESEKNGFIHVTDLGP 85 >gi|172041049|ref|YP_001800763.1| ribonuclease E [Corynebacterium urealyticum DSM 7109] gi|171852353|emb|CAQ05329.1| ribonuclease E [Corynebacterium urealyticum DSM 7109] Length = 1190 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 139/574 (24%), Positives = 236/574 (41%), Gaps = 24/574 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 P + I + +++ ++VQ++K+ G+KGA +T +S AGRY V P Sbjct: 453 SEVNWHSPHLHSKSRRIDQALRSGDQVMVQVIKDPVGHKGARLTNRISFAGRYLVYFPG- 511 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272 ISRK+ ++ LKEI + + G G I+RTA + + I+ D L + W Sbjct: 512 GTTAGISRKLPEAERKR-LKEILQRVVPGQG-GAIIRTAAENVAEELIEEDVNRLHKQWL 569 Query: 273 ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 +E P +YEE N++ IRDL+ +D SE++V G+K +R +D+M + Sbjct: 570 NIEKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSELLVEGDKSWRMVRDYMGRM 629 Query: 329 MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P V ++ +F ++ QL +V LPS G+++I+ TEA+ IDV Sbjct: 630 APELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLPSGGHLVIDHTEAMTVIDV 689 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM ++N V ++L Sbjct: 690 NTGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLEENQDLVLRRL 749 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E L +DR +V +++ GL++++R+R+ + +LE+ + C C G G I V Sbjct: 750 IEYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCECCDGRGVIVHPDPVEQDF 809 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 E + +++ E R G Sbjct: 810 SEEPERRRRSSRGNGRGRDERGS-------KEQRNGQGTEQRQGGR-GDQGSKNHGRDEQ 861 Query: 564 YIEKGSPVQALV---NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++G + + + D + + S++ + ++ Sbjct: 862 RDQRGKNATRHEDKGSKSKVANGKGREDAQDHRNSEGQERRSGKQRQDSQAGSESAADLG 921 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E+ RR RR + T + S D E S Sbjct: 922 GEQKQETRTSRRGGRRSVQRRTSSSVKDATARTEQGSAEKKQSADRSDEASQSGQERAPR 981 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 S + S+ ++ P +K Sbjct: 982 RVVRRIVRRTAPSQQRGGAAQRRSAANADAPELK 1015 Score = 87.3 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V V+ D ++ E S+ ++ + GNIYL +V V S++AAF+D G R+ L E+ Sbjct: 396 TQVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAAFIDIGTGRNAVLYASEV 455 Query: 75 HP 76 + Sbjct: 456 NW 457 >gi|81299687|ref|YP_399895.1| ribonuclease [Synechococcus elongatus PCC 7942] gi|81168568|gb|ABB56908.1| ribonuclease, Rne/Rng family [Synechococcus elongatus PCC 7942] Length = 808 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 119/345 (34%), Positives = 186/345 (53%), Gaps = 7/345 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE +KG +T +SL GRY VLMP +S R ++ Sbjct: 136 ITELLAPQQKVLVQVMKEPTSSKGPRLTGNISLPGRYLVLMPYSSGVSLSRRIMSESERN 195 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L PAGMG+++RT + I D E L R W+ +LA ++ AP L+ Sbjct: 196 R--LRALSVLIKPAGMGLLVRTEADGIAEELIIEDLESLQRQWEQTLQLADSTPAPALLT 253 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + I+R +RD+Y + ++ I+V G + K + + QY D I Sbjct: 254 RDDDFIQRVLRDMYDEGVNRIVVDSHTGLKRVKQHLSAWGAGEIAPGLLIEQYRDRSSIL 313 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GYVII +TEAL +DVNSG TR +T L TN EA Sbjct: 314 DYFRVNAAIREALKPRVDLPSGGYVIIEKTEALTVVDVNSGSFTRSATARETVLWTNCEA 373 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+I+VDFIDM+ +++ V + +L+ D++R Q+ +S GL+E Sbjct: 374 AAEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFTRALRHDKSRPQISQLSELGLVE 433 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEE 509 ++R+R ++ E + CT C G G++ A I+R+ + Sbjct: 434 LTRKRQGQNIYELFSTPCTTCGGLGHVAHLPGEVGAQPIVRTSDR 478 Score = 85.8 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ V ++++EE G+IYL V V P + AAFV Sbjct: 55 MPKQIVI----AEQHRIAAVFAEDQIEEFIV--AKGTHQIGDIYLGVVENVLPGIDAAFV 108 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 109 NIGDSEKNGFIHVTDLGP 126 >gi|56750671|ref|YP_171372.1| ribonuclease E [Synechococcus elongatus PCC 6301] gi|56685630|dbj|BAD78852.1| ribonuclease E [Synechococcus elongatus PCC 6301] Length = 808 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 119/345 (34%), Positives = 186/345 (53%), Gaps = 7/345 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE +KG +T +SL GRY VLMP +S R ++ Sbjct: 136 ITELLAPQQKVLVQVMKEPTSSKGPRLTGNISLPGRYLVLMPYSSGVSLSRRIMSESERN 195 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L PAGMG+++RT + I D E L R W+ +LA ++ AP L+ Sbjct: 196 R--LRALSVLIKPAGMGLLVRTEADGIAEELIIEDLESLQRQWEQTLQLADSTPAPALLT 253 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + I+R +RD+Y + ++ I+V G + K + + QY D I Sbjct: 254 RDDDFIQRVLRDMYDEGVNRIVVDSHTGLKRVKQHLSAWGAGEIAPGLLIEQYRDRSSIL 313 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GYVII +TEAL +DVNSG TR +T L TN EA Sbjct: 314 DYFRVNAAIREALKPRVDLPSGGYVIIEKTEALTVVDVNSGSFTRSATARETVLWTNCEA 373 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+I+VDFIDM+ +++ V + +L+ D++R Q+ +S GL+E Sbjct: 374 AAEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFTRALRHDKSRPQISQLSELGLVE 433 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEE 509 ++R+R ++ E + CT C G G++ A I+R+ + Sbjct: 434 LTRKRQGQNIYELFSTPCTTCGGLGHVAHLPGEVGAQPIVRTSDR 478 Score = 85.8 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ V ++++EE G+IYL V V P + AAFV Sbjct: 55 MPKQIVI----AEQHRIAAVFAEDQIEEFIV--AKGTHQIGDIYLGVVENVLPGIDAAFV 108 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 109 NIGDSEKNGFIHVTDLGP 126 >gi|317507074|ref|ZP_07964836.1| rne/Rng family ribonuclease [Segniliparus rugosus ATCC BAA-974] gi|316254617|gb|EFV13925.1| rne/Rng family ribonuclease [Segniliparus rugosus ATCC BAA-974] Length = 553 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 11/372 (2%) Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 +N G + I+ IK LLVQ+ K+ G+KGA +TT ++LAGRY Sbjct: 128 NNAVLYAGEVNWEGVGLGGDARKIEHAIKPGDYLLVQVNKDPVGHKGARLTTQIALAGRY 187 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF- 265 V +P S + ISRK+ + + L+EI G+ GVI+RTA + ++ D Sbjct: 188 LVFVPGAS-AKGISRKLPDTERNR-LREILAGIVPE-DAGVIVRTASEGVSAEQLTEDVT 244 Query: 266 ---EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 E R+ + P +Y E +L+ + IRD++ +D ++++V GE + + Sbjct: 245 RLAEQWQRIQKAAEDAKGQGGGPRSLYREPDLLVKLIRDVFNEDFAKLVVQGENSHEVVQ 304 Query: 323 DFMKLLMPSYARIVRQYEDP---HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +++ + P + ++E +F ++ QL +V LPS G ++I++TEA+ Sbjct: 305 EYLSAIAPDLGERLERFEPKAEGQDVFSEYRVDEQLAKALGRKVWLPSGGTLVIDRTEAM 364 Query: 380 VSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 +DVN+G+ +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N Sbjct: 365 TVVDVNTGKFVGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNREL 424 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 V ++L E L +DR R QV +++ GL++M+R+RI + +LE+ + C++C+G G I Sbjct: 425 VLRRLTECLARDRTRHQVSEVTSLGLVQMTRKRIGTGLLEAFSSKCSHCEGRGVIVHPDP 484 Query: 499 VALSILRSVEEY 510 + + Sbjct: 485 LGTELPEEGRHE 496 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL DN + E + + GNIYL +V V PS++AAFVD G + L E+ Sbjct: 78 TQIGVLEDNVLVEHFVTTSASASMVGNIYLGRVQNVLPSMEAAFVDIGRGNNAVLYAGEV 137 Query: 75 HPD 77 + + Sbjct: 138 NWE 140 >gi|260655698|ref|ZP_05861171.1| ribonuclease G [Jonquetella anthropi E3_33 E1] gi|260629615|gb|EEX47809.1| ribonuclease G [Jonquetella anthropi E3_33 E1] Length = 495 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 124/491 (25%), Positives = 226/491 (46%), Gaps = 8/491 (1%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 D V + D L ++ + + ++ +VS + + Sbjct: 13 DEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGDGRNGFLY 72 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + L+VQ+ K R +KGA VT +SL GR+ V +P +SRKI + Sbjct: 73 LADAKGFSVHENGELIVQVTKTPRRSKGARVTPQVSLPGRFFVYLPFAG-SVGVSRKIGS 131 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 DR+ L+ + +E GVI+RTA ++ D L W+ + + A ++P Sbjct: 132 AKDRQRLRALVGSVERG---GVIIRTAAQDAADEDLAADLAQLQEQWERIEQSAKLRMSP 188 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++++E + RA+RD ISE++ + + K F+ ++ V E + Sbjct: 189 GVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAVKGFVSAAGAGWSGQVSLLEKGIDL 248 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+ +++SL + +V LPS GY++I+QTEAL +IDVNSG+ + T TNLE Sbjct: 249 FEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTAIDVNSGKCVDGSSLSATVKTTNLE 308 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA EIARQ+RLR + G+++VDFIDME + + +V LK++ D +V+V +++ GL Sbjct: 309 AAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLDALKDASAADPNKVRVYGMTSLGLA 368 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E++R+R R + T+ C+ C G ++A S+ R + + ++ +V + Sbjct: 369 EVTRKRTRLDLRSQMTQPCSSCC-EGRTWKDEALAASVKRRLRKAFAGSSSGWALVAMND 427 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 ++ + + + +E FG I + + + IE + ++ Sbjct: 428 ELAQIVA---QKWLKGWEETFGRRIVLRGLPGASRTDWRIEALGDSRKILTQAQSPWERE 484 Query: 586 QAPSYDKNIEC 596 + + + Sbjct: 485 EPSRVYRTTDS 495 Score = 93.9 bits (231), Expect = 8e-17, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 1 MAN--KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 M K+ + EE RV V+ D R+ +L E Q G+IYLA+V + + AAF Sbjct: 1 MTQDVKIYANMLDEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAF 60 Query: 59 VDYGGNRHGFLPFLE 73 ++ G R+GFL + Sbjct: 61 LNLGDGRNGFLYLAD 75 >gi|326779383|ref|ZP_08238648.1| ribonuclease, Rne/Rng family [Streptomyces cf. griseus XylebKG-1] gi|326659716|gb|EGE44562.1| ribonuclease, Rne/Rng family [Streptomyces cf. griseus XylebKG-1] Length = 964 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 123/348 (35%), Positives = 202/348 (58%), Gaps = 7/348 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 268 GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG 327 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + VP GVI+RTA ++ E++RD E L + W+ Sbjct: 328 SMTG-ISRKLPDTERSR--LKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWE 384 Query: 274 NVRELALN---SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++R+ A S AP L+Y E ++ R +RD++ +D S++IVSG++ + ++ + P Sbjct: 385 DIRKKAKGTSGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAP 444 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ +F I+ QL +V LPS G ++I++TEA++ +DVN+G+ T Sbjct: 445 DLTERLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGKFT 504 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 + +E+T + NLEAAEEI RQLRLRDL G++VVDFIDM + N V ++L E L + Sbjct: 505 GQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGR 564 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 DR + QV +++ GL++M+R+R+ +LES ++ C +C G G I Sbjct: 565 DRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 612 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL DN + E E GN+YL KV V PS++AAFVD G Sbjct: 199 ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG 258 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 259 KGRNAVLYAGEV 270 >gi|313887009|ref|ZP_07820709.1| S1 RNA binding domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332299883|ref|YP_004441804.1| ribonuclease, Rne/Rng family [Porphyromonas asaccharolytica DSM 20707] gi|312923535|gb|EFR34344.1| S1 RNA binding domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176946|gb|AEE12636.1| ribonuclease, Rne/Rng family [Porphyromonas asaccharolytica DSM 20707] Length = 527 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 132/572 (23%), Positives = 246/572 (43%), Gaps = 67/572 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ID +E + VL D+ + EL + I+ Y Sbjct: 1 MNSELIIDVK-PKEVSMAVLEDDELVEL---RTENRNIR---Y----------------- 36 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +I D+V G+ + Sbjct: 37 ---------AVGDI-------------------------LLGEVDNVVRGNNAAFVNIGP 62 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + D+ + ++ K I +K + Sbjct: 63 MKNGFLHYNDLGKVFGATTHLLEDIAEKKKVPPIDKVKEGTPLPKDGNIINSGLKKGDKI 122 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LV++ +E G KG +++ LS+AGR+ VL+P + + S + + + Sbjct: 123 LVKVTREAFGTKGPSLSAELSIAGRFLVLVPFSDQVAISSEIRSTEERTR--LKTIVQSV 180 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + +G G I+RT A + E+ + L+ ++ + + + AP +YEE N IR Sbjct: 181 IKSGYGAIIRTQAAGKKTQELVEEMMDLIDRFETSIKKLVRAKAPTQIYEERNRAINLIR 240 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY--EDPHPIFFRSGIEVQLDSL 358 D Y K ++IIV+ Y+E + ++ + P +IV Y + P+F G+ Q +L Sbjct: 241 DSYNKTFTKIIVNDPDYYKELRGYVADIDPGREQIVTLYEDDSKRPLFDACGVTKQKKTL 300 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC-IEDTALQTNLEAAEEIARQLRLR 417 +VTL + +II QTEA+ IDVNS + R E+TA N+ A+ IARQ+RLR Sbjct: 301 FGRKVTLRNGANIIIEQTEAMHVIDVNSSKKARRTSGQEETAFDVNMAVADLIARQIRLR 360 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 DL G+IV+DFIDM E +N+ + + + + + DRA ++ +S FGL++++RQR+R + + Sbjct: 361 DLGGIIVIDFIDMNEAAHNKELYEHMVKLMANDRATHKILPLSKFGLMQITRQRVRQATI 420 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT-AHNIIVHTHSDVVLYLLNQ-- 534 T + C C+G+G I++ + + + + N +H H VV Y+ Sbjct: 421 IRTEETCPTCQGSGKIKTSITFTDDLEEIIAQLTSGDKPIRNFAMHLHPYVVAYIKKAPL 480 Query: 535 -KRATIVEYEARFGVSINVVIGIELADKLFYI 565 + +++ ++ +I ++ ++A + I Sbjct: 481 LGSSIFTKWKKKYSKNIKLIEDQDVALLDYKI 512 >gi|300741647|ref|ZP_07071668.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567] gi|300380832|gb|EFJ77394.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567] Length = 1171 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 142/630 (22%), Positives = 251/630 (39%), Gaps = 10/630 (1%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ L+++ + V+ SL + + Sbjct: 394 DRQMLVRQKEGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 453 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G DV I+ +K +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 454 RGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPG 513 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P S ISRK+ + + K + L P G GVI+RTA ++ E+ D Sbjct: 514 RFLVYVPGGSMTG-ISRKLPDTERARLKKILKDKL--PDGAGVIVRTAAEGASEEELTHD 570 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ ++E A + ++Y+E +L+ + +RD++ +D + +IV G+ + + Sbjct: 571 INRLRTQWEEIQEKANSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIE 630 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P ++++ED +F I QL +V LPS G ++I++TEA+ + Sbjct: 631 AYVTYVAPDLLSRLQKWEDEDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVV 690 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 691 DVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 750 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 +L E L +DR + QV +++ GL++M+R+R+ + +LE ++ C C G G + ++ Sbjct: 751 RLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEQCDSCGGRGLLVHDQPLSG 810 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + + Q S + + + E + + + Sbjct: 811 RSGGASDFIHRQERTERKRSRAASRNNTRDAAEGVDSEKD-EKKAERRNAMASIAAASHS 869 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +E K ++ E + S ED + Sbjct: 870 ADELEAEDQANRKKRKRRKRSRRTETAELSLEQEIQGIKAGAKAHREVSSREDKVAEVTE 929 Query: 622 EE---STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + G + R HDA + S + + Sbjct: 930 TDWIGEQGDFTLEQLAVAFDRDLNPEHDARFTRESSRSEAIRAGEAKARASQKAGRITRS 989 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSS 708 G + + E E+ Sbjct: 990 ESGGFKSNQGDQSSAEQKSPRAERENLQVE 1019 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 ++ VL D + E + + GN+YL KV V PS++AAFVD G R+ L E+ Sbjct: 406 IQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 465 Query: 75 HPD 77 + D Sbjct: 466 NWD 468 >gi|220912895|ref|YP_002488204.1| ribonuclease, Rne/Rng family [Arthrobacter chlorophenolicus A6] gi|219859773|gb|ACL40115.1| ribonuclease, Rne/Rng family [Arthrobacter chlorophenolicus A6] Length = 1151 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 118/417 (28%), Positives = 209/417 (50%), Gaps = 6/417 (1%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DRQ ++++ + + V+ SL + + Sbjct: 432 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 491 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G + +Q I+ +K+ +LVQ+ K+ G+KGA +T+ +SL G Sbjct: 492 RGRNAVLYAGEVNWEAVNLEGKQRRIENALKSGDTVLVQVTKDPVGHKGARLTSQISLPG 551 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RY V +P S ISRK+ + + + +P GVI+RTA ++ E+ D Sbjct: 552 RYLVYVPGGSMTG-ISRKLPDVERNRLKR--ILKDRLPEQAGVIVRTAAEGASEEELTHD 608 Query: 265 FEYLMRLWDNVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 L W+ + + ++ L+Y E +L + +RD++ +D S++IVSGE+ + + Sbjct: 609 INRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIE 668 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + P + ++ IF I+ Q+ + +V LPS G ++I++TEA+ + Sbjct: 669 AYVTYVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVV 728 Query: 383 DVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 DVN+G+ T +E+T + NLEAAEE+ RQLRLRD+ G+IV+DFIDM + N V + Sbjct: 729 DVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLR 788 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++ E L +DR + QV +++ GL++M+R+R+ + +LE + C C G G + Sbjct: 789 RMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDDP 845 Score = 90.8 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 + +I + ++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 433 RQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGR 492 Query: 64 NRHGFLPFLEIHPD 77 R+ L E++ + Sbjct: 493 GRNAVLYAGEVNWE 506 >gi|315656600|ref|ZP_07909487.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492555|gb|EFU82159.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 602 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 124/420 (29%), Positives = 216/420 (51%), Gaps = 10/420 (2%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 + R+ + +E + + D+ + G + + + N + + S Sbjct: 28 ARRENVKREMVVRERDNLNQIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEA 87 Query: 144 -----DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N G D + I+E + ++LVQ+ K+ G+KGA +T+ Sbjct: 88 AFVDIGKGRNAVLYAGEVNWDAAGLNAKTGRIEEALNPGDLVLVQVTKDPIGHKGARLTS 147 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 ++LAGR+ VL+P+ + ISRK+ ++ + +PAG GVI+RTA T+ Sbjct: 148 QITLAGRHLVLVPSGAMTG-ISRKLPEEERKR--LKALLKTMIPAGYGVIVRTAAEGATE 204 Query: 259 IEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 +++ D E L R+W+ + P L++ E L R +RD++ +D + + G+ Sbjct: 205 EQLRADVERLTRIWEEIETKQRKTRNGPVLLHGEPELAVRVVRDIFNEDFRSLTIQGDNA 264 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++ +++ L P ++ +E IF I+ QL + +V LPS GY+II++TE Sbjct: 265 WKTISKYVRDLSPELKDRLKHWEGEDDIFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTE 324 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ IDVN+GR +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N Sbjct: 325 AMTVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNR 384 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR R QV +++ GL++M+R+R+ ++E+ + C C G G+I Sbjct: 385 DLVLRRLVECLGRDRTRHQVTEVTSLGLIQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 444 Score = 91.2 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ VL D + E ++ GN+YL KV V S++AAFVD G R+ L E++ Sbjct: 47 QIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 106 Query: 76 PD 77 D Sbjct: 107 WD 108 >gi|212716706|ref|ZP_03324834.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM 16992] gi|212660410|gb|EEB20985.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM 16992] Length = 483 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 117/424 (27%), Positives = 211/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + + Sbjct: 2 DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 62 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 122 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKVAPKDMGVIIRTAAEGASEEAITKD 178 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G++ Y Sbjct: 179 LESLVRQWERITAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRI 238 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 239 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 298 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++DF+DM N Sbjct: 299 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 358 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 359 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 418 Query: 497 SSVA 500 Sbjct: 419 EPTV 422 Score = 95.8 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 14 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 73 Query: 75 HPD 77 + D Sbjct: 74 NWD 76 >gi|269957053|ref|YP_003326842.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM 15894] gi|269305734|gb|ACZ31284.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM 15894] Length = 1043 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 119/336 (35%), Positives = 197/336 (58%), Gaps = 6/336 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P ISRK+ + Sbjct: 634 QPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVLVPGGGMTG-ISRKLPD 692 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA- 284 + LK++ R + G GVI+RTA ++ E++ D E L W + A + Sbjct: 693 VERNR-LKKVLRDIVPE-GAGVIVRTAAEGASEEELRADVERLQNQWTGITTKAGRASTS 750 Query: 285 -PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 P L+ E +L R +RD++ D S +IV G+ ++E +++ L P V + + Sbjct: 751 APALLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAWQEVAGYVEELAPDLRERVTSWTENT 810 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQT 402 +F ++ QL +V LPS G ++I++TEA+ IDVN+G+ T +E+T + Sbjct: 811 DVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGAGGTLEETVTRN 870 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 871 NLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSL 930 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 GL++M+R+R+ ++E+ ++ C +CKG G+I Sbjct: 931 GLVQMTRKRVGQGLVEAFSETCEHCKGRGFIVHAEP 966 Score = 98.1 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + + + GN+YL +V V PS++AAFVD G R+ L E+ Sbjct: 564 TQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV 623 Query: 75 HPD 77 + D Sbjct: 624 NWD 626 >gi|298346947|ref|YP_003719634.1| ribonuclease E and G [Mobiluncus curtisii ATCC 43063] gi|304389342|ref|ZP_07371307.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298237008|gb|ADI68140.1| ribonuclease E and G [Mobiluncus curtisii ATCC 43063] gi|304327460|gb|EFL94693.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 602 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 124/420 (29%), Positives = 216/420 (51%), Gaps = 10/420 (2%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 + R+ + +E + + D+ + G + + + N + + S Sbjct: 28 ARRENVKREMVVRERDNLNQIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEA 87 Query: 144 -----DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N G D + I+E + ++LVQ+ K+ G+KGA +T+ Sbjct: 88 AFVDIGKGRNAVLYAGEVNWDAAGLNAKTGRIEEALNPGDLVLVQVTKDPIGHKGARLTS 147 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 ++LAGR+ VL+P+ + ISRK+ ++ + +PAG GVI+RTA T+ Sbjct: 148 QITLAGRHLVLVPSGAMTG-ISRKLPEEERKR--LKALLKTMIPAGYGVIVRTAAEGATE 204 Query: 259 IEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 +++ D E L R+W+ + P L++ E L R +RD++ +D + + G+ Sbjct: 205 EQLRADVERLTRIWEEIETKQRKTRNGPVLLHGEPELAVRVVRDIFNEDFRSLTIQGDNA 264 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++ +++ L P ++ +E IF I+ QL + +V LPS GY+II++TE Sbjct: 265 WKTISKYVRDLSPELKDRLKHWEGEDDIFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTE 324 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ IDVN+GR +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N Sbjct: 325 AMTVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNR 384 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR R QV +++ GL++M+R+R+ ++E+ + C C G G+I Sbjct: 385 DLVLRRLVECLGRDRTRHQVTEVTSLGLIQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 444 Score = 91.2 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ VL D + E ++ GN+YL KV V S++AAFVD G R+ L E++ Sbjct: 47 QIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 106 Query: 76 PD 77 D Sbjct: 107 WD 108 >gi|282896398|ref|ZP_06304419.1| Ribonuclease E and G [Raphidiopsis brookii D9] gi|281198686|gb|EFA73566.1| Ribonuclease E and G [Raphidiopsis brookii D9] Length = 691 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 123/329 (37%), Positives = 187/329 (56%), Gaps = 5/329 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T +++ GRY VLMP KG +SR+I N +R Sbjct: 82 ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITMPGRYVVLMP-YGKGVNLSRRIKNESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ +++ A ++ AP L+ Sbjct: 141 NRLRA-LAILIKPAGMGILVRTEAEGKPEEAIIEDLELLQKQWEVIQQEAASTRAPSLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346 + + I+R +RD+Y D++ I+V G R K +++ + PI Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLRRVKQYLQNWSGGQTPQGVLLDHHRDRSPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+IVVDFIDME +++ V + ++LK D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKTLKADKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 ++R+R ++ E + C C G G+I Sbjct: 380 LTRKRQGQNIYELFGESCPTCGGLGHIVH 408 Score = 80.8 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ ++ V +++++EL + H G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVTDLGP 72 >gi|27904808|ref|NP_777934.1| ribonuclease G [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396629|sp|Q89AH3|RNE_BUCBP RecName: Full=Putative truncated ribonuclease E; Short=RNase E gi|27904206|gb|AAO27039.1| ribonuclease G [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 410 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 155/394 (39%), Positives = 221/394 (56%), Gaps = 7/394 (1%) Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---- 150 + A+ D D+ + N + + I E S+ +A D Sbjct: 10 EIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYGEKKNGFLP 69 Query: 151 -DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + R I+ ++K Q +VQI KEERG KGA +TT++SLAG Y VL Sbjct: 70 LKEISRNYFPNNCSNYRHLHIKNILKEGQECIVQIDKEERGTKGALLTTFISLAGNYLVL 129 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN E ISRKI +LK+I L VP MG+I+RT+G R+ ++ D + + Sbjct: 130 MPNCPHLEGISRKIEGIDR-FHLKKIISMLMVPENMGIIIRTSGVGRSIETLQLDLNFRV 188 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + W +++ A + AP L+++E N++ R +RD KDI EIIV + A+D+M + Sbjct: 189 KNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDNPEILELARDYMFNMN 248 Query: 330 PSY-ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 SY + ++ Y P+F IE Q+++L + V LPS G +II+ TEAL +ID+NS + Sbjct: 249 CSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDYTEALTAIDINSSQ 308 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 ST+ IE+TA TN EA EIARQLRLRDL GLIV+DFIDM K+ + +E L + L+ Sbjct: 309 STKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKHQKMIELHLHQVLQ 368 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 KDRARVQVG+IS FGLLEMSRQ + S + + Sbjct: 369 KDRARVQVGSISQFGLLEMSRQCLGSPLKKINHN 402 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A +++ R+ ++ ++ +L+ E+ KKQ K NIY K+ R+EPSL+AAFVDYG Sbjct: 2 RRMLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 ++GFLP EI +Y+ Sbjct: 62 EKKNGFLPLKEISRNYF 78 >gi|33864056|ref|NP_895616.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9313] gi|33635640|emb|CAE21964.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. MIT 9313] Length = 647 Score = 210 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 177/324 (54%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G+KG +T L+L GRY VL P+ +G ISR+ N Sbjct: 82 ITELLEPRQQVLVQVMKEPTGSKGPRLTGNLALPGRYLVLQPH-GQGVNISRR-INSEGE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++RT ++ + D E L+R W+ +++ A N++ P L+ Sbjct: 140 RNRLRALGVLVKPPGAGLLIRTEADGISEDLLIDDLEVLLRQWEAIQQAADNALPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D+ ++V+ F+ P+ V + + + Sbjct: 200 RDEDFIHRVLRDHVGPDLVRVVVNDAAAIERVSSFLGQEGPNVL--VEAHNESTELLEHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR T L TN EAA E Sbjct: 258 RVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARQTVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDME +++ + + +++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMESRRDQLQLLEHFTAAVRDDAARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPACGGLGHV 401 Score = 85.8 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ +L D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----SEQLRIAALLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|269218644|ref|ZP_06162498.1| putative S1 RNA binding domain protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269211755|gb|EEZ78095.1| putative S1 RNA binding domain protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 940 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 147/618 (23%), Positives = 253/618 (40%), Gaps = 47/618 (7%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R+ L++E + + D + V S+ + + Sbjct: 329 REMLIREQDGLNQIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIGK 388 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 N G + R I++ +K+ ++VQ+ K+ G+KGA +T ++LAGR Sbjct: 389 GRNAVLYAGEVNWEAAGLEGRPRRIEQALKSGDTVVVQVTKDPIGHKGARLTAQITLAGR 448 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VL+P+ + ISRK+ + ++ + VPA GVI+RTA ++ +++ D Sbjct: 449 HLVLVPSGAMTG-ISRKLPDKERQRLKR--LLREIVPAEHGVIVRTAAEGTSEDQLRADV 505 Query: 266 EYLMRLWDNVRELALNSV-APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 E L + W +++ A N+ AP L+ E L R +RD++ +D + + G K +R ++ Sbjct: 506 ERLAKTWQDIQTKAKNTKGAPMLLKGEPELAVRVVRDIFNEDFQSLKIQGAKAWRTISEY 565 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 + L P ++ + + IF ++ QL +V LPS G ++I++TEA+ IDV Sbjct: 566 VAELSPELSQRLEHWTGASDIFASHRVDEQLAKAFDRKVWLPSGGTLVIDRTEAMTVIDV 625 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L Sbjct: 626 NTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRELVLRRL 685 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E L +DR R QV +++ GL++M+R+R+ ++E+ + VC C+G GYI + V Sbjct: 686 VECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYIIHSNPVERGD 745 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + + + A + Sbjct: 746 GGADKRARNKQAAKQSASEPRDE------------------------------------- 768 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 P V + + +D+N E D A ++ E + Sbjct: 769 -----GPKHDDVKAALHSIAAAAQSKHDENSEPGDSDSAQDSAKSADDAEGRTAEDGEDS 823 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 G + R R + + GV +V D Sbjct: 824 KPGTAKARNRTKASAKKQGTKKAKGVQGKRGKAASVQAAEADEADGAGQADIPGEASEQG 883 Query: 684 HGFTENYDVSIPPVSTPE 701 S P PE Sbjct: 884 QAEFAERAESFSPGDAPE 901 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI ++ VL D+ + E + + GN+YL +V V PS++AAFVD G Sbjct: 329 REMLIREQDGLN-QIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIG 387 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ + Sbjct: 388 KGRNAVLYAGEVNWE 402 >gi|17231823|ref|NP_488371.1| ribonuclease E [Nostoc sp. PCC 7120] gi|17133467|dbj|BAB76030.1| ribonuclease E [Nostoc sp. PCC 7120] Length = 687 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 120/326 (36%), Positives = 187/326 (57%), Gaps = 5/326 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++L GRY VLMP +G +SR+I + +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ +++ A ++ AP L+ Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQKQWEAIQQEAQSTRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + I+R +RD+Y D++ I+V G + K +++ + + D PI Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSGGQTPQGLLIDHHRDRSPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+IVVDFIDME +++ V + ++L+ D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKALRADKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGY 492 ++R+R ++ E C C G G+ Sbjct: 380 LTRKRQGQNIYELFGDTCPACGGLGH 405 Score = 80.8 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ ++ V +++++EL + H G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVTDLGP 72 >gi|261405390|ref|YP_003241631.1| ribonuclease, Rne/Rng family [Paenibacillus sp. Y412MC10] gi|261281853|gb|ACX63824.1| ribonuclease, Rne/Rng family [Paenibacillus sp. Y412MC10] Length = 411 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 180/342 (52%), Gaps = 2/342 (0%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + K+ K++ I +++ Q L+VQ++KE RG KGA VTT+ SL GR V MP Sbjct: 69 IDDVLHPHLEKQPKQKPSISQLLTAGQELIVQVMKEPRGGKGARVTTHFSLPGRCMVYMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + + + + G+I+RT IK D EYL + Sbjct: 129 TADYVAVSKKIGRDAERAR--LKSIGEQLRTDEEGIIIRTVSEDEPLEFIKGDLEYLRKE 186 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + + A ++ P L++ + L++R +RD + E+++ ++ E K ++K +P Sbjct: 187 WARILDKAESAPVPALLHRDLGLLQRFLRDAFDPLHDELVIDSKQKGEETKSYLKETVPG 246 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V Y + PIF G++ Q+ + ++TLP ++++QTEA+ IDVN+ + Sbjct: 247 MEPKVTYYSEGGPIFQAYGLDEQMRASFARKITLPEGVTIVVDQTEAMTIIDVNTAKYIG 306 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 E+T L+TNL AA++IAR LRL D+ G+I+VDFIDM+ +++ + V ++ ++KDR Sbjct: 307 GDNFEETVLKTNLLAAQQIARILRLWDIGGIIIVDFIDMDHEEHRQQVVSVMEAVMRKDR 366 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 + V + GLLEM+R++ R S K C C G G + Sbjct: 367 TKSFVVGWTKLGLLEMTRKKARESSSLPFAKPCGTCGGRGVV 408 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 11 HVE-ET-RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 H E ET ++ ++ D R+ E E ++ + G+ Y +V V P +QAAFVD G ++ F Sbjct: 7 HCEHETIQMALIEDGRLAEFAVERSREQSVVGSFYKGRVVNVLPGMQAAFVDIGLKKNAF 66 Query: 69 LPFLEI-HPDYYQIPF 83 L ++ HP + P Sbjct: 67 LYIDDVLHPHLEKQPK 82 >gi|75907504|ref|YP_321800.1| ribonuclease E and G [Anabaena variabilis ATCC 29413] gi|75701229|gb|ABA20905.1| Ribonuclease E and G [Anabaena variabilis ATCC 29413] Length = 687 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 120/326 (36%), Positives = 187/326 (57%), Gaps = 5/326 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++L GRY VLMP +G +SR+I + +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ +++ A ++ AP L+ Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQKQWEAIQQEAQSTRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + I+R +RD+Y D++ I+V G + K +++ + + D PI Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSGGQTPQGLLIDHHRDRSPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+IVVDFIDME +++ V + ++L+ D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKALRADKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGY 492 ++R+R ++ E C C G G+ Sbjct: 380 LTRKRQGQNIYELFGDTCPACGGLGH 405 Score = 80.8 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ ++ V +++++EL + H G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVTDLGP 72 >gi|213966157|ref|ZP_03394343.1| ribonuclease E [Corynebacterium amycolatum SK46] gi|213951172|gb|EEB62568.1| ribonuclease E [Corynebacterium amycolatum SK46] Length = 1236 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 145/582 (24%), Positives = 243/582 (41%), Gaps = 49/582 (8%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + R I+ +K +LVQ+ K+ G+KGA +TT++S+AGR+ V +P Sbjct: 508 GDLNWKLLGTKSRSRKIEHALKAGDQILVQVSKDPIGHKGARLTTHISMAGRFLVYVPG- 566 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + P G G I+RTA +K I+ D + L W Sbjct: 567 GRSAGISRKLPEPERKR--LKSILSEVTPEGSGTIIRTAAEGVSKEAIEADIKRLESQWQ 624 Query: 274 NVRELALNSV-----APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + E + + P +YEE +++ + +RD++ +D S ++V G++ + D++ L Sbjct: 625 EIWEASEAAKAKRGAKPIALYEEPDMLVKVVRDVFNEDFSRLVVEGDRPWNTVTDYIGDL 684 Query: 329 MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P +++Y +F I+ QL +V LPS G ++I++TEA+ IDV Sbjct: 685 APELEPRLQRYFAKEHGGADVFEHFRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDV 744 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 745 NTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 804 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 KE+L +DR+R +V +++ GL++M+R+R+ + +LE+ + C+ C G G I V Sbjct: 805 KEALGRDRSRHEVSEVTSLGLVQMTRKRLGTGLLETFSTPCSCCNGRGLIIHIDPV---- 860 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 E Q H N +R R S Sbjct: 861 -----EQDNQGRGHK--------------NGRRNEEQGKSKRRNKS-RSEHNPANHPAAL 900 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + QA +T + I SE+ E Sbjct: 901 AMHRNQGDQAGSSTATLDDDAETNQRDRDAADKRVAAAVEAVIVSSENDEPKPPRRRRVR 960 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVS------------SIQNVIDDSFDMYMEPS 671 + +R+ R R + + ++ + S D YM Sbjct: 961 KSQSRDDEQRQNGRGRQERRERNEQSDNSNDLAALAAAAVAEAREKDPEEPSDDRYMPKE 1020 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 D + P + + S+ +P Sbjct: 1021 GQRRRRRATRRRAVRRTAVDETTAPQAESQTASTTDVREPAK 1062 Score = 81.6 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T V VL D+ + E S+ + GNIYL +V V PS++AAF+D G +R+G + ++ Sbjct: 451 TEVGVLEDDLLVEHFVTSDTQTTQIGNIYLGRVQNVLPSMEAAFIDIGTDRNGVIYVGDL 510 Query: 75 HP 76 + Sbjct: 511 NW 512 >gi|291569312|dbj|BAI91584.1| ribonuclease E [Arthrospira platensis NIES-39] Length = 750 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 204/413 (49%), Gaps = 10/413 (2%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 +Q ++ E + + D++ V N + I + + ++ + Sbjct: 3 KQIIIAEQ--HRIAAVFSEDEIQELVVATGNQQVSDIYLGIVENVLPGIDAAFVNIGDPE 60 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + V P + + I E++ +Q +LVQ++KE G KG +T ++L GR Sbjct: 61 RNGFIHVSDLGPLRLKRSS---GSITELLMPQQKVLVQVMKEPTGTKGPRLTGNITLPGR 117 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VLMP +G +SR+I + +R L+ L P+GMG+++RT + I D Sbjct: 118 YLVLMP-YGRGVNLSRRIRSEAERNRLRA-LAILIKPSGMGLLVRTEAEGMAEDAILEDL 175 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 E L + W+ V++ A ++ P L+ + + I+R +RD+Y +++ I+V G + K + Sbjct: 176 EALQKQWEEVQQEATSTRPPALLNRDNDFIQRVLRDMYSTEVNRIVVDSADGIKRVKQHL 235 Query: 326 KLLMPSYARIVRQYEDPHPIF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 + + + + V LPS GY+II TEAL I Sbjct: 236 VNWSVGKTPQGVLIDHHRERIPILEYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSG TR +T L TN EAA EIARQLRLR++AG+I+VDFIDM+ +++ V + Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEH 355 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 + LK D++R Q+ +S GL+E++R+R ++ E + C C G G++ Sbjct: 356 FNKVLKADKSRPQIAQLSELGLVELTRKRQGQNIYELFGRSCPTCNGLGHLIH 408 Score = 87.3 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ V ++ ++EL Q +IYL V V P + AAFV Sbjct: 1 MSKQIII----AEQHRIAAVFSEDEIQELVV--ATGNQQVSDIYLGIVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVSDLGP 72 >gi|167947753|ref|ZP_02534827.1| Ribonuclease E and G [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 290 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 88/279 (31%), Positives = 156/279 (55%) Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 LV+E+ L R++RDL D+ ++ + + +A +F++ +P R V Y P+F Sbjct: 9 LVHEDLPLALRSLRDLVGPDVEKVRIDSRSTHGKAIEFVQQFIPEIKRQVEYYPGERPVF 68 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G+E ++ + +V L S G+++I+QTEA+ +IDVN+G +E+T +TNLEA Sbjct: 69 ELYGVEDEIQKALERQVQLKSGGHLVIDQTEAMTTIDVNTGAFVGHRNLEETIFKTNLEA 128 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+ I RQLRLR+L G+I++DFIDM + ++ R V + L+ L D AR + +S+ GL+E Sbjct: 129 AQAICRQLRLRNLGGIIIIDFIDMTDPEHRRQVLRALERCLSHDHARTHITEVSSLGLVE 188 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R R S+ + C C G G ++ ++ I R + Q+ +++V + Sbjct: 189 MTRKRTRDSLEHILCQPCPCCAGRGSTKTAETICYEIFREILREARQFDVESLLVIASQE 248 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V+ LL+++ + + E E G I + + + F + Sbjct: 249 VIDRLLDEEASHLAELEQFIGRPIRLQAEVLYGQEHFDV 287 >gi|319949123|ref|ZP_08023215.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4] gi|319437195|gb|EFV92223.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4] Length = 1044 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 116/352 (32%), Positives = 200/352 (56%), Gaps = 10/352 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + + I++ +K+ ++LVQ+ K+ G KGA ++T +SLAGR+ V +P+ Sbjct: 565 GEVNWEAAGLGGKARRIEQALKSGDMVLVQVTKDPVGQKGARLSTQISLAGRFLVYVPD- 623 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + R+ + VP G GVI+RTA + EI RD E L W Sbjct: 624 GNSTGISRKLPDTERRR--LKGILKEVVPEGSGVIIRTAAEGVSAEEIGRDVERLAAQWT 681 Query: 274 NVRELALNSVA-----PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + E A P +YEE +L+ + +RDL+ +D S++++ GE + ++ + Sbjct: 682 EISEAAAKRTESGSGTPVALYEEPDLLVKVVRDLFNEDFSKLVIQGETSWNTVHGYVSRV 741 Query: 329 MPSYARIVRQYEDPH-PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 P + ++++P +F ++ QL +V LPS G ++I++TEA+ IDVN+G Sbjct: 742 APEMVDRLERHDNPDVDVFATHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTG 801 Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 + T +E+T + NLEAAEEI RQLRLRD+ G++++DFIDM + N V ++L E+ Sbjct: 802 KYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDVGGMVIIDFIDMVLEANRDLVLRRLTEA 861 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 L +DR R QV +++ GL++++R+++ + ++E+ + C +C+G G I Sbjct: 862 LGRDRTRHQVSEVTSLGLVQLTRKKLGTGLVEAFSTPCEHCQGRGLIVHADP 913 Score = 96.2 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 T+V VL D + E +E + + GN+YL +V V PS++AAFVD G R+G L E Sbjct: 507 MTQVGVLEDKVLVEHFVTTESARSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGE 566 Query: 74 IHPD 77 ++ + Sbjct: 567 VNWE 570 >gi|262201995|ref|YP_003273203.1| ribonuclease, Rne/Rng family [Gordonia bronchialis DSM 43247] gi|262085342|gb|ACY21310.1| ribonuclease, Rne/Rng family [Gordonia bronchialis DSM 43247] Length = 1123 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 126/376 (33%), Positives = 198/376 (52%), Gaps = 14/376 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 569 GEVNWDAAGLDGGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGG 628 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ LK+I L GVI+RTA + E+ D L W Sbjct: 629 SSTG-ISRKLPDVERKR-LKQILAKLVPA-DAGVIIRTASEGVSAEELGADIARLEAKWR 685 Query: 274 NVRELALNSVAPH------LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327 ++ E + +YEE +L+ R +RDL+ +D +++V G K + + ++ Sbjct: 686 SIDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAWNLVEGYVGS 745 Query: 328 LMPSYARIVRQYEDPH----PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + P V ++E PH F I+ QL +V LPS G +II TEA+ +D Sbjct: 746 VAPDLMDRVEKFEKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVD 805 Query: 384 VNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 VN+G+ T +E+T + NLEAAEEI RQ+RLRD+ G+I+VDFIDM + N V ++ Sbjct: 806 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRR 865 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L E+L +DR R QV +++ GL++M+R+R+ + +LE+ + CT C G G I + V + Sbjct: 866 LTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRGVIVHANPVEVR 925 Query: 503 ILRSVEEYLLQYTAHN 518 + + Sbjct: 926 SEEAGRVEGGSKRSRR 941 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E + + GNIYL +V V P ++AAFVD G R+G L E+ Sbjct: 512 TQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEV 571 Query: 75 HPD 77 + D Sbjct: 572 NWD 574 >gi|20807392|ref|NP_622563.1| ribonuclease G and E [Thermoanaerobacter tengcongensis MB4] gi|20515912|gb|AAM24167.1| Ribonucleases G and E [Thermoanaerobacter tengcongensis MB4] Length = 472 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 136/455 (29%), Positives = 227/455 (49%), Gaps = 15/455 (3%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED-------VKGGSPE 158 D + D L+E P + +V+ ++ K Sbjct: 12 DEKLCQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIGLNKNAFLF 71 Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 + I +V+K Q ++VQ+ KE G K VTT +S+ G Y VLMP Sbjct: 72 LEDVVGREDKSITQVLKPGQEVMVQVTKEAIGLKSPRVTTNISIPGEYVVLMPFM-NYVN 130 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 +S +I NP DR L EIAR L+ GMG+I+RT+ + + EIK D E L+ +++ ++E Sbjct: 131 VSHRIENPADRAKLAEIARRLKPE-GMGLIMRTSSKNAKEEEIKEDIEKLLSVYEKIKEN 189 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 +P L+Y E ++ + +RD D+ EI+++ E+ Y + ++K + ++ + Sbjct: 190 FKLLPSPSLIYSEESIAVKYLRDFLSYDVDEIVINDEEEYEKVNQYLKKIGKDIEIVLER 249 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 + G++ Q++ L V L S G+++I+QTEAL IDVN+G+ + +E+T Sbjct: 250 GDVSGI----YGVDFQVEKLLNKRVWLKSGGFLVIDQTEALTVIDVNTGKYVGKSSLEET 305 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TNLEAAEEIA QL+LRD+ G+I++DFIDM+ + + + + KE LK+DRA+ V Sbjct: 306 IFKTNLEAAEEIALQLKLRDIGGIILIDFIDMKNENFKKELLEFFKEKLKQDRAKCTVLG 365 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 + GL+EM+R+++R + C C G G + S+ + + +E L Sbjct: 366 FTQLGLVEMTRKKVREEISSFLKVKCPVCGGTGTVYSEEYIYKRLKNQIERILRHVLVKK 425 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 +IV V L ++ I EYE G+ + Sbjct: 426 VIVKGDKKVGEIL--SRKKLIEEYEKSRGIKLIFE 458 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +++ID ++ L D +++E E ++ K I GNIY KV V +QAAFVD G Sbjct: 5 KRLIIDIDEKL-CQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIG 63 Query: 63 GNRHGFLPFLEI 74 N++ FL ++ Sbjct: 64 LNKNAFLFLEDV 75 >gi|118472999|ref|YP_888890.1| ribonuclease, Rne/Rng family protein [Mycobacterium smegmatis str. MC2 155] gi|118174286|gb|ABK75182.1| ribonuclease, Rne/Rng family protein [Mycobacterium smegmatis str. MC2 155] Length = 1037 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 130/428 (30%), Positives = 219/428 (51%), Gaps = 15/428 (3%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 D+ A+ AV +D + + + S V I + S+ +A Sbjct: 386 VRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAF 445 Query: 143 NDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 D+ V G + + I++ +K ++VQ+ K+ G+KGA +TT + Sbjct: 446 VDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQV 505 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGRY V +P S ISRK+ + ++ + VP+ GVI+RTA + + Sbjct: 506 SLAGRYLVYVPGASSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEED 562 Query: 261 IKRDFEYLMRLWDNVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 I+ D E L + W + + A +YEE +++ + IRDL+ +D S +IVSG+ Sbjct: 563 IRSDVERLQKRWSEIEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSSLIVSGD 622 Query: 316 KGYREAKDFMK----LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371 + + +++ LMP + D +F I+ QL +V LPS G + Sbjct: 623 EAWNTINSYVEAVAPDLMPRLTKYEPAGPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTL 682 Query: 372 IINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 +I++TEA+ +DVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM Sbjct: 683 VIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDM 742 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 + N V ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + CT+C G Sbjct: 743 VLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTACTHCGGR 802 Query: 491 GYIRSQSS 498 G + Sbjct: 803 GIVLHGDP 810 Score = 101 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 402 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 461 Query: 75 HPD 77 + + Sbjct: 462 NWE 464 >gi|227548738|ref|ZP_03978787.1| ribonuclease E [Corynebacterium lipophiloflavum DSM 44291] gi|227079205|gb|EEI17168.1| ribonuclease E [Corynebacterium lipophiloflavum DSM 44291] Length = 743 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 15/406 (3%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV--KGGSPEDVPK 162 +D + + +D + + I + S+ +A D+ N V G Sbjct: 258 EDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGVLYAGEVDWKAAG 317 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 R I++ +K+ ++VQ+ K+ G+KGA +TT +SLAGRY V +P + ISRK Sbjct: 318 LGGRSRRIEQALKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYLVYVPG-GRSAGISRK 376 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE----- 277 + P ++ LKEI + G G I+RTA ++ I D L W+ ++E Sbjct: 377 LPAPERKR-LKEILAKVVPGKG-GAIIRTAAEGVSEEAIAADVTRLHNQWETLQEQAERE 434 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 + P +YEE NL+ + +RDL+ +D S++IV G++ + ++ + P + Sbjct: 435 KSSKGAKPVTLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHAYVSSVAPDLEDRLV 494 Query: 338 QYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-RE 392 +Y+ F ++ Q+ V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 495 RYDRAAHDGQDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSG 554 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 +E+T + NLEAAEEI RQ+RLRD+ G+I+VDFIDM +N V ++LKE+L +DR Sbjct: 555 GSLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRRLKEALGRDRT 614 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 R QV +++ GL++M+R+R+ + +LE+ + C C G G I + Sbjct: 615 RHQVSEVTSLGLVQMTRKRLGTGLLETFSTPCECCGGRGIIVADDP 660 Score = 96.6 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 37/64 (57%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 H T+V VL D + E S+ + GNIYL +V V PS++AAF+D G NR+G L Sbjct: 248 HGTITQVGVLEDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGVLY 307 Query: 71 FLEI 74 E+ Sbjct: 308 AGEV 311 >gi|87301874|ref|ZP_01084708.1| ribonuclease E [Synechococcus sp. WH 5701] gi|87283442|gb|EAQ75397.1| ribonuclease E [Synechococcus sp. WH 5701] Length = 713 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 180/324 (55%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GR+ VL P +G +ISR+I+ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLTLPGRFLVLQP-QGQGVSISRRISGENER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT ++ ++ D E L+R W+ ++E A + P L+ Sbjct: 141 NRLRA-LGVLIKPPGAGLLVRTEAEGVSEDQLIDDLETLLRQWEGIQEAAETATPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RDLY ++ ++V F+ + V + D + Sbjct: 200 RDEDFIHRVLRDLYSPEVWRVVVDTPAAVARVNAFLGADQANLL--VEHHGDGTDVLEHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 RVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSASSRETVLWTNCEAAAE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G++++DFIDME +++ + + +S++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVVIIDFIDMESRRDQLMLLEHFTQSVQDDAARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D RV+EL + G++YL +V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLNDERVDELVV--AQGRYQIGDVYLGRVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|119485463|ref|ZP_01619791.1| ribonuclease E [Lyngbya sp. PCC 8106] gi|119457219|gb|EAW38345.1| ribonuclease E [Lyngbya sp. PCC 8106] Length = 724 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 134/548 (24%), Positives = 239/548 (43%), Gaps = 22/548 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++L GRY VLMP +G +SR+I + Sbjct: 82 ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIRS-ETE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N + L P+GMG+++RT + I D E L + W+NV++ A ++ P L+ Sbjct: 140 RNRLKALAILIKPSGMGLLVRTEAEGMAEDAILEDLESLQKQWENVQQEASSTRPPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346 + + I+R +RD+Y D++ I+V G + K + A + Sbjct: 200 RDDDFIQRVLRDMYSGDVNRIVVDVHTGIKRVKQHLMNWSVGKAPQGVLIDHHRERIPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY++I TEAL IDVNSG TR +T L TN E+ Sbjct: 260 EYFRVNAAIREALRPRVDLPSGGYIVIEPTEALTVIDVNSGSFTRSATSRETVLWTNCES 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+I+VDFIDM+ +++ V + + LK D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNKVLKADKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E + C C G G++ + + E + ++ + + Sbjct: 380 LTRKRQGQNIYELFGRPCPTCSGLGHLVHLPGELAEV--ELPESSISSSSSSNSSSSAER 437 Query: 527 VVLYLLNQKR-ATIVEYEARFGVSINVVIGIELADKL----------FYIEKGSPVQALV 575 +VL N ++ E + ++ + ++ +E + Sbjct: 438 IVLTPRNSLSVSSPETTEQQLAKTVILDAPQTRSEPETVELDAVSNLQELELINHPSYQD 497 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 +TG + D + + + + + + ++ + S G+ + Sbjct: 498 HTGSNARRRRRRRIGDLDSLVREDEPSRNNLRLTPTSGYNENRSEIQLSEGLPSRSGLAE 557 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM----EPSDITNHNLLENGAHGFTENYD 691 R R ++ + D MY P +++ + T Sbjct: 558 RSRTAKSETLKPTTEPPEVVSVEMTTDEQQMYAMMGISPLMLSSQTPKNSRNVIVTVCLP 617 Query: 692 VSIPPVST 699 PP Sbjct: 618 GEEPPEPK 625 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ V +++++EL + +IYL V V P + AAFV Sbjct: 1 MSKQIII----AEQHRIAAVFSEDQIQELVVATGSH--QVSDIYLGVVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDAERNGFIHVSDLGP 72 >gi|254774544|ref|ZP_05216060.1| Rne protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 749 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 119/388 (30%), Positives = 195/388 (50%), Gaps = 19/388 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 204 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 263 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W Sbjct: 264 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWK 320 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A+ YEE +++ + IRDL+ +D + +IVSG+ + +++ + Sbjct: 321 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSV 380 Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P V +YE +F I+ QL +V LPS G ++I++TEA+ Sbjct: 381 APDLVSKVTKYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 440 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEA EEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 441 VIDVNTGKFTGSGGNLEQTVTKNNLEAVEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 500 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 501 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPV 560 Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHS 525 A S R E + Sbjct: 561 DSAPSNGRKSESGGRRGRRKKSKAEEPV 588 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 147 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 206 Query: 75 HPDYYQIPFSDRQ 87 + + + SDR+ Sbjct: 207 NWEAAGLGGSDRK 219 >gi|84498597|ref|ZP_00997360.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649] gi|84381130|gb|EAP97015.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649] Length = 1003 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 195/344 (56%), Gaps = 12/344 (3%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 R I+ + + +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 463 QNRAKRIENAMGSGDTVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTG-ISRKL 521 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 + + + VP GVI+RTA ++ E++ D E L + W+ +++ + Sbjct: 522 PDTERAR--LKAILKEVVPEHAGVIVRTAAEGASEEELRADVERLTKAWEKIQQKVAAAS 579 Query: 284 APH--------LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + L++ E +L R IRD++ +D SE+IVSG++ + E +++ + P A+ Sbjct: 580 SKKAGSGGAPVLLHGEADLTVRVIRDVFTEDFSELIVSGDQAWAEVSGYVEDVAPDLAKR 639 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHC 394 + + +F ++ Q+ +V LPS G ++I++TEA+ +DVN+G+ Sbjct: 640 LTHWTSEEDLFSHHRVDEQISKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGN 699 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +E+T + N+EAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR + Sbjct: 700 LEETVTKNNIEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKH 759 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 QV +++ GL++M+R+R+ S ++E ++ C +C G G I Sbjct: 760 QVAEVTSLGLVQMTRKRVGSGLIEVFSEQCEHCAGRGIIVQSEP 803 Score = 96.2 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E E + GN+YL +V V PS++AAFVD G R+ L E+ Sbjct: 395 TQIGVLEDGVLVEHYVSRETNASMAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV 454 Query: 75 HPD 77 + D Sbjct: 455 NWD 457 >gi|254414757|ref|ZP_05028522.1| ribonuclease, Rne/Rng family protein [Microcoleus chthonoplastes PCC 7420] gi|196178605|gb|EDX73604.1| ribonuclease, Rne/Rng family protein [Microcoleus chthonoplastes PCC 7420] Length = 689 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 136/494 (27%), Positives = 219/494 (44%), Gaps = 30/494 (6%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 +R I E++ +Q +LVQ++KE GNKG +T +SL GRY VLMP +G +SR+I Sbjct: 77 RRSGAITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMP-YGRGVNLSRRIK 135 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 N +R L+ L PAGMG+++RT R + I D E L R W+ +++ A ++ A Sbjct: 136 NENERNRLRA-LAVLIKPAGMGLLVRTEAEGRAEEAIMEDLEALQRQWEAIQQEATSTRA 194 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+ + + I+R +RD+Y D++ I+V G + K + + + Sbjct: 195 PALLNRDDDFIQRVLRDMYTADVNRIVVDSNTGVKRVKQQLVSWSGGRSPEGVLIDHHRD 254 Query: 345 IF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 I + + V LPS GY+II TEAL IDVNSG TR +T L Sbjct: 255 RLSILDYFRINAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSGSFTRSATARETVLW 314 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TN EAA EIARQLRLR++AG+I+VDFIDM+ +++ V + ++LK D+AR Q+ +S Sbjct: 315 TNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNKALKMDKARPQIAQLSE 374 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL-SILRSVEEYLLQYTAHNII 520 GL+E++R+R ++ E + C C G G++ + + E Sbjct: 375 LGLVELTRKRQGQNIYELFGRTCPSCGGLGHLVHLPGEPEPQVQQEPETISRVEIPETPD 434 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG---SPVQALVNT 577 + D+ + E E L + E+G + Sbjct: 435 LPEPLDIPGF------NEPDELE--------------LNHPSYQ-ERGIPNGTNRRRRRR 473 Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + P N+ + + + + V +R + + Sbjct: 474 RLEDVISKDEPVAKSNVRPITLSQRSSDVSEDVEGMRRDTTSVERPIVSDSSERVGKPQL 533 Query: 638 RRPATDHHDAGVVS 651 R + V+ Sbjct: 534 IRSVVEMEPPEVIQ 547 Score = 82.3 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 MA +++I E+ R V +++++EL + G+IYL V V P + AAFV Sbjct: 1 MAKQIII----AEQYRLAAVFSEDQIQELVVATGSH--QVGDIYLGIVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDAERNGFIHVTDLGP 72 >gi|320093915|ref|ZP_08025753.1| ribonuclease E and G [Actinomyces sp. oral taxon 178 str. F0338] gi|319979152|gb|EFW10657.1| ribonuclease E and G [Actinomyces sp. oral taxon 178 str. F0338] Length = 668 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 122/347 (35%), Positives = 197/347 (56%), Gaps = 5/347 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY VL+PN Sbjct: 280 GEVNWDAVGLDGKPRRIESALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPNG 339 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K VP+G GVI+RTA ++ +I+ D L + W+ Sbjct: 340 SMMG-ISRKLPDKERARLKK--ILKQVVPSGSGVIVRTAAEGASEEQIRADVARLTKQWE 396 Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 +VR + AP L+ E L R +RD++ +D + +++ G Y K+++ L P Sbjct: 397 DVRAKQKSTRSAPALMRGEPELAVRVVRDIFNEDFTSLVIQGRGTYATVKEYVDELSPEL 456 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + V Q+ +F I+ QL +V LPS G +II++TEA+ IDVN+G+ Sbjct: 457 SDRVEQWVGADDVFHAHRIDEQLAKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGKYIGA 516 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++++DF+DM + N V ++L E L +DR Sbjct: 517 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIVIIDFVDMVLESNRDLVLRRLVECLGRDR 576 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 R QV I++ GL++M+R+R+ ++E+ + C C+G G+I Sbjct: 577 TRHQVTEITSLGLVQMTRKRVGEGLVEAFSTQCGACEGRGFIVHSHP 623 Score = 99.7 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 38/75 (50%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ H ++ +L D+ + E K GNIYL +V V PS++AAFVD G Sbjct: 211 KRTMVIRDHEGLDQIAILEDDLLVEHYVARRTSKSAVGNIYLGRVQNVLPSMEAAFVDIG 270 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 271 RGRNAVLYAGEVNWD 285 Score = 39.6 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 31/148 (20%), Gaps = 2/148 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P A + A K + + + + Sbjct: 26 EPAGAGGPDEAPSRRSADAGDEPKEASPRRRRSSRTAPEDGAGADAKGVPDDDGAAGAPP 85 Query: 629 RKRRRRRRRR--RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +KRR R+R P+ D G D + +D + E G Sbjct: 86 KKRRTRKRSSAEAPSADGEGTGPQEDGEAPAPKRRRRAKKEDSAADPQEQDAHEAEGEGG 145 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK 714 E + +K Sbjct: 146 RRRRRRRPRSSDEAEAGGDLTDQVKALK 173 >gi|226360450|ref|YP_002778228.1| ribonuclease [Rhodococcus opacus B4] gi|226238935|dbj|BAH49283.1| putative ribonuclease [Rhodococcus opacus B4] Length = 1110 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 119/357 (33%), Positives = 202/357 (56%), Gaps = 11/357 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 500 GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 558 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272 ISRK+ + ++ LK+I R + GVI+RTA ++ E+ RD L W Sbjct: 559 GTSTGISRKLPDTERKR-LKDILRDIVPS-DAGVIIRTASEGVSEEELARDVTRLQEQWA 616 Query: 273 ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + S P +YEE +L+ + IRDL+ +D S++++ GEK + + +++ + Sbjct: 617 GIEAQAAKAESGKSGNPQALYEEPDLLVKVIRDLFNEDFSKLVIEGEKAWSTVESYIQSV 676 Query: 329 MPSYARIVRQYEDPH--PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 P ++Q+ + +F I+ QL +V LPS G ++I++TEA+ +DVN+ Sbjct: 677 APDLMPRLKQHTSDNGVDVFEAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 736 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 G+ T +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E Sbjct: 737 GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 796 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +L +DR R QV +++ GL++M+R+++ + ++E+ + C +C G G I + + Sbjct: 797 ALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHAEPIEVK 853 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E + + GN+YL +V V PS++AAF+D G R+G L E+ Sbjct: 443 TQVAVLEDGVLVEHFVTTSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 502 Query: 75 HPD 77 + + Sbjct: 503 NWE 505 >gi|296170489|ref|ZP_06852076.1| ribonuclease E [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894841|gb|EFG74563.1| ribonuclease E [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 945 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 122/391 (31%), Positives = 200/391 (51%), Gaps = 19/391 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 402 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 461 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W Sbjct: 462 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWR 518 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A YEE +++ + IRDL+ +D + +IVSG++ + D++ + Sbjct: 519 QIEAKATEITEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDEAWTTITDYVNSV 578 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE P F I+ QL + +V LPS G ++I++TEA+ Sbjct: 579 APDLVPKLSKYEPPSGPEGQAGPDVFAVHRIDEQLAKAMERKVWLPSGGTLVIDRTEAMT 638 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +DVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 639 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 698 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + CT+C G G + Sbjct: 699 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCTHCGGRGIVLHTDPV 758 Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 A S R E + V Sbjct: 759 DSAPSNGRKSESGGRRGRRSKKNRAEEPVVA 789 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 345 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 404 Query: 75 HPDYYQIPFSDRQ 87 + + + SDR+ Sbjct: 405 NWEAAGLGGSDRK 417 >gi|215412203|ref|ZP_03420965.1| ribonuclease E rne [Mycobacterium tuberculosis 94_M4241A] Length = 915 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 120/377 (31%), Positives = 197/377 (52%), Gaps = 19/377 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 370 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 429 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 430 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 486 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A + YEE +++ + IRDL+ +D +IVSG++ + +++ + Sbjct: 487 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 546 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 547 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 606 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 607 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 666 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L ESL +DR R QV +++ GL++++R+R+R+ ++E+ + C C G G + Sbjct: 667 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLRTGLIEAFSTSCPNCSGRGILLHADPV 726 Query: 499 -VALSILRSVEEYLLQY 514 A + R E + Sbjct: 727 DSAAATGRKSEPGARRG 743 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 313 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 372 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 373 NWDAAGLGGADRK 385 >gi|171741361|ref|ZP_02917168.1| hypothetical protein BIFDEN_00442 [Bifidobacterium dentium ATCC 27678] gi|171276975|gb|EDT44636.1| hypothetical protein BIFDEN_00442 [Bifidobacterium dentium ATCC 27678] Length = 482 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + + Sbjct: 2 DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 62 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 121 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 122 RFLVLVPSGGMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAITKD 178 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D ++IV GE+ Y Sbjct: 179 LESLVRQWERISAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRI 238 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 239 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 298 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++DF+DM N Sbjct: 299 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 358 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 359 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 418 Query: 497 SSVA 500 Sbjct: 419 EPTV 422 Score = 95.4 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 14 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 73 Query: 75 HPD 77 + D Sbjct: 74 NWD 76 >gi|124024063|ref|YP_001018370.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9303] gi|123964349|gb|ABM79105.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. MIT 9303] Length = 647 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 177/324 (54%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G+KG +T L+L GRY VL P+ +G ISR+ N Sbjct: 82 ITELLEPRQQVLVQVMKEPTGSKGPRLTGNLALPGRYLVLQPH-GQGVNISRR-INSEGE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 +N L P G G+++RT ++ + D E L+R W+ +++ A N++ P L+ Sbjct: 140 RNRLRALGVLVKPPGAGLLVRTEADGISEDLLIDDLEVLLRQWEAIQQAADNALPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D+ ++V+ F+ P+ V + + + Sbjct: 200 RDEDFIHRVLRDHVGPDLVRVVVNDAAAIERVSSFLGQEGPNVL--VEAHNESTELLEHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR T L TN EAA E Sbjct: 258 RVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARQTVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDME +++ + + +++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMESRRDQLQLLEHFTAAVRDDAARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPACGGLGHV 401 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ +L D RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----SEQLRIAALLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|329947026|ref|ZP_08294438.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526837|gb|EGF53850.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 986 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 144/586 (24%), Positives = 256/586 (43%), Gaps = 30/586 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ + + +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 397 GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 456 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + K VP GVI+RTA ++ ++ D E L+ W+ Sbjct: 457 TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGASQEQLTADVERLVAQWE 513 Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++ + + AP L+ E L R IRD++ +D +IVSG+ + ++ + Sbjct: 514 SIDKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRRLIVSGDTTWSTISQYVDEV 573 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P A + + P +F ++ QL +V LPS G ++I++TEA+ IDVN+GR Sbjct: 574 SPDLAERLEHWTGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 633 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L Sbjct: 634 FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 693 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 +DR R QV +++ GL++M+R+R+ ++E+ + C +CKG G+I V + Sbjct: 694 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQ-QADM 752 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE--------------ARFGVSINVV 553 + + + + +K A E G + Sbjct: 753 SASASRGGGRSRGRKNREEQAVAGGGKKGAKKDSQETKGSKSAKSSGGGKGAGGSDVVGS 812 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK---SE 610 D+ +G+ Q Q + + + + S+ Sbjct: 813 PEPGADDEARAAVRGALAQIAAAAEQAHKDAQQEGQESREAQDAKSPQGAVEDSAKSVSD 872 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 S++D+ + +E + + + R R AT+ A D + + + + Sbjct: 873 SVDDMVEPDGGQEGQVSPVEDKPVKTRARKATERKSARKSGDRADRKPGKKTAKKAEKKA 932 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + ++G S PV ++ S+ P + + Sbjct: 933 GNKPEELAEQSGE---APEEPTSEKPVRRTRRRATAKSAAPSPENS 975 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ VL D + E + + GN+Y+ +V V PS++AAFVD G R+ L E++ Sbjct: 341 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 400 Query: 76 PD 77 D Sbjct: 401 WD 402 >gi|88807951|ref|ZP_01123462.1| ribonuclease E [Synechococcus sp. WH 7805] gi|88787990|gb|EAR19146.1| ribonuclease E [Synechococcus sp. WH 7805] Length = 647 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 180/324 (55%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P + +G IS++I++ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQP-SGQGVNISKRISSEGER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT ++ + D E LMR W+ +++ A + P L+ Sbjct: 141 NRLRA-LGVLVKPPGAGLLIRTEADEVSEELLIDDLESLMRQWEAIQKAAETASPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD ++S ++V F+ ++ V + +P + Sbjct: 200 RDEDFIHRILRDHIAPELSRVVVDDPAAVERVTGFLGEEATHFS--VEAHGEPDELLEHF 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAVE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDM+ +++ + + +++ D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAIRDDSARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACASCGGLGHV 401 Score = 85.8 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL D+RV+EL + G++YL V V P + AAFV Sbjct: 1 MPQQIVI----AEQLRIAAVLTDDRVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|78185596|ref|YP_378030.1| ribonuclease E and G [Synechococcus sp. CC9902] gi|78169890|gb|ABB26987.1| RNAse E [Synechococcus sp. CC9902] Length = 646 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P+ G ISR+I+ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GLGVNISRRISAEAER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT ++ + D E L+R W+ +++ A +V P L+ Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEAEGISEELLIDDLEALLRQWEAIQQAAETAVPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D++ ++V F+ + + V +++ + Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVDEPAAVSRVGSFLGSELGNVV--VECHDESTELLEHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 I + + V LPS GYVII TEAL IDVNSG TR +T L TN+EAA E Sbjct: 258 KINAAIRDALRPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNVEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDM+ +++ + + + + D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTATRDDSARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFGRACPSCGGLGHV 401 Score = 87.7 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MSQQIVI----AEQLRIAAVLSDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|298490082|ref|YP_003720259.1| ribonuclease, Rne/Rng family ['Nostoc azollae' 0708] gi|298232000|gb|ADI63136.1| ribonuclease, Rne/Rng family ['Nostoc azollae' 0708] Length = 713 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 123/326 (37%), Positives = 186/326 (57%), Gaps = 5/326 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++L GRY VLMP +G +SR+I + +R Sbjct: 82 ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMGV++RT + + I D E L + W+ +++ A ++ AP L+ Sbjct: 141 NRLRA-LAILIKPAGMGVLVRTEAEGKPEEAIIEDLELLQKQWEVIQQEAQSTRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346 + + I+R +RD+Y D++ I+V G R K +++ + PI Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLRRVKQYLQNWSGGQTPQGVLIDHHRDRSPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+IVVDFIDME +++ V + +SLK D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKSLKADKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGY 492 ++R+R ++ E + C C G G+ Sbjct: 380 LTRKRQGQNIYELFGETCPTCGGLGH 405 Score = 80.8 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ ++ V +++++EL + H G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVTDLGP 72 >gi|111018324|ref|YP_701296.1| ribonuclease E/ G [Rhodococcus jostii RHA1] gi|110817854|gb|ABG93138.1| probable ribonuclease E/ G [Rhodococcus jostii RHA1] Length = 1134 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 202/357 (56%), Gaps = 11/357 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 508 GEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 566 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW- 272 ISRK+ + ++ LK+I R + GVI+RTA ++ E+ RD + L W Sbjct: 567 GTSTGISRKLPDTERKR-LKDILRDIVPS-DAGVIIRTASEGVSEEELARDVKRLQDQWA 624 Query: 273 ----DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + S P +YEE +L+ + IRDL+ +D S++++ G+K + + +++ + Sbjct: 625 GIEAQAAKAESGKSGNPQALYEEPDLLVKVIRDLFNEDFSKLVIEGDKAWSTVESYIRSV 684 Query: 329 MPSYARIVRQYEDPH--PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 P + Q+ + +F I+ QL +V LPS G ++I++TEA+ +DVN+ Sbjct: 685 APDLMPRLEQHTSDNGVDVFEAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 744 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 G+ T +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E Sbjct: 745 GKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTE 804 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +L +DR R QV +++ GL++M+R+++ + ++E+ + C +C G G + + + Sbjct: 805 ALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIVVHAEPIEVK 861 Score = 97.4 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E + + GN+YL +V V PS++AAF+D G R+G L E+ Sbjct: 451 TQVAVLEDGVLVEHFVTTSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 510 Query: 75 HPD 77 + + Sbjct: 511 NWE 513 >gi|169628697|ref|YP_001702346.1| ribonuclease E [Mycobacterium abscessus ATCC 19977] gi|169240664|emb|CAM61692.1| Possible ribonuclease E Rne [Mycobacterium abscessus] Length = 959 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 131/486 (26%), Positives = 229/486 (47%), Gaps = 20/486 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K+ +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 441 GEVNWDAAGLGGSNRKIEQALKSGDYVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGA 500 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ LKEI R + GVI+RTA + +I+ D + L W Sbjct: 501 SSTG-ISRKLPDTERQR-LKEILRDIVPA-DAGVIIRTASEGVREEDIRADVQRLQEQWQ 557 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + A + + +YEE +++ + +RDL+ +D S++I+ G+ + D++K + Sbjct: 558 GIEQSATDLTSKASGAAVALYEEPDVLVKVVRDLFNEDFSKLIIEGDAAWDTIDDYVKTV 617 Query: 329 MPSYARIVRQYEDPHPI--FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 P + +YE F I+ QL +V LPS G ++I++TEA+ +DVN+ Sbjct: 618 APDLLSRIERYESGEGPDVFAVHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNT 677 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 G+ T +E+T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V ++L E Sbjct: 678 GKFTGAGGNLEETVTRNNLEAAEEIVRQLRLRDVGGIVVIDFIDMVLESNRDLVLRRLTE 737 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS-----VA 500 +L +DR R QV +++ GL++++R+++ + ++E+ + CT+C G G + A Sbjct: 738 ALGRDRTRHQVSEVTSLGLVQLTRKKLGTGLIEAFSSTCTHCAGRGIVLHVDPVDNASNA 797 Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINVVIGIEL 558 S + E + V + + A G ++ Sbjct: 798 SSPAKKAETGRRAKRSRK-GKTDDVVVARTPSHPQGEHPMFKAMAAANGHH-EDDEDADV 855 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + V+ + + S + E + + SE + Sbjct: 856 NEDALDDDALEEVEEVEEIVETIQSAETPDNVPDQDEPEHEPASAGSNAASEPWAEGAPE 915 Query: 619 IVSEES 624 + E Sbjct: 916 AAATEP 921 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 384 TQIAVLEDGVLVEHFVTSAASASLVGNIYLGVVQNVLPSMEAAFVDIGRGRNGVLYAGEV 443 Query: 75 HPD 77 + D Sbjct: 444 NWD 446 >gi|298525924|ref|ZP_07013333.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298495718|gb|EFI31012.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 953 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 120/377 (31%), Positives = 197/377 (52%), Gaps = 19/377 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 408 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 467 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 468 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 524 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A + YEE +++ + IRDL+ +D +IVSG++ + +++ + Sbjct: 525 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 584 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 585 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 644 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 645 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 704 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L ESL +DR R QV +++ GL++++R+R+R+ ++E+ + C C G G + Sbjct: 705 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLRTGLIEAFSTSCPNCSGRGILLHADPV 764 Query: 499 -VALSILRSVEEYLLQY 514 A + R E + Sbjct: 765 DSAAATGRKSEPGARRG 781 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 351 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 410 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 411 NWDAAGLGGADRK 423 >gi|167969768|ref|ZP_02552045.1| ribonuclease E rne [Mycobacterium tuberculosis H37Ra] gi|215404382|ref|ZP_03416563.1| ribonuclease E rne [Mycobacterium tuberculosis 02_1987] gi|215427829|ref|ZP_03425748.1| ribonuclease E rne [Mycobacterium tuberculosis T92] gi|215431392|ref|ZP_03429311.1| ribonuclease E rne [Mycobacterium tuberculosis EAS054] gi|215446691|ref|ZP_03433443.1| ribonuclease E rne [Mycobacterium tuberculosis T85] gi|219558442|ref|ZP_03537518.1| ribonuclease E rne [Mycobacterium tuberculosis T17] gi|254551494|ref|ZP_05141941.1| ribonuclease E rne [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187453|ref|ZP_05764927.1| ribonuclease E rne [Mycobacterium tuberculosis CPHL_A] gi|260201572|ref|ZP_05769063.1| ribonuclease E rne [Mycobacterium tuberculosis T46] gi|260205750|ref|ZP_05773241.1| ribonuclease E rne [Mycobacterium tuberculosis K85] gi|294994446|ref|ZP_06800137.1| ribonuclease E rne [Mycobacterium tuberculosis 210] gi|297635052|ref|ZP_06952832.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 4207] gi|297732043|ref|ZP_06961161.1| ribonuclease E rne [Mycobacterium tuberculosis KZN R506] gi|306776715|ref|ZP_07415052.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu001] gi|306785241|ref|ZP_07423563.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu003] gi|306804196|ref|ZP_07440864.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu008] gi|306968599|ref|ZP_07481260.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu009] gi|307080531|ref|ZP_07489701.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu011] gi|313659379|ref|ZP_07816259.1| ribonuclease [Mycobacterium tuberculosis KZN V2475] gi|308214876|gb|EFO74275.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu001] gi|308330063|gb|EFP18914.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu003] gi|308349184|gb|EFP38035.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu008] gi|308353805|gb|EFP42656.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu009] gi|308361699|gb|EFP50550.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu011] Length = 915 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 370 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 429 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 430 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 486 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A + YEE +++ + IRDL+ +D +IVSG++ + +++ + Sbjct: 487 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 546 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 547 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 606 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 607 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 666 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L ESL +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 667 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 726 Query: 499 -VALSILRSVEEYLLQY 514 A + R E + Sbjct: 727 DSAAATGRKSEPGARRG 743 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 313 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 372 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 373 NWDAAGLGGADRK 385 >gi|118465085|ref|YP_880955.1| Rne protein [Mycobacterium avium 104] gi|118166372|gb|ABK67269.1| Rne protein [Mycobacterium avium 104] Length = 949 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 120/388 (30%), Positives = 196/388 (50%), Gaps = 19/388 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 401 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 460 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W Sbjct: 461 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWK 517 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A+ YEE +++ + IRDL+ +D + +IVSG+ + +++ + Sbjct: 518 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSV 577 Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P V +YE +F I+ QL +V LPS G ++I++TEA+ Sbjct: 578 APDLVSKVTKYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 637 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 638 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 697 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 698 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPV 757 Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHS 525 A S R E + Sbjct: 758 DSAPSNGRKSESGGRRGRRKKSKAEEPV 785 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 344 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 403 Query: 75 HPDYYQIPFSDRQ 87 + + + SDR+ Sbjct: 404 NWEAAGLGGSDRK 416 >gi|329928506|ref|ZP_08282374.1| putative ribonuclease G [Paenibacillus sp. HGF5] gi|328937765|gb|EGG34173.1| putative ribonuclease G [Paenibacillus sp. HGF5] Length = 416 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 180/342 (52%), Gaps = 2/342 (0%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + K+ K++ I +++ Q L+VQ++KE RG KGA VTT+ SL GR V MP Sbjct: 74 IDDVLHPHLEKQPKQKPSISQLLTAGQELIVQVMKEPRGGKGARVTTHFSLPGRCMVYMP 133 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + + + + G+I+RT IK D EYL + Sbjct: 134 TADYVAVSKKIGRDAERAR--LKSIGEQLRTDEEGIIIRTVSEDEPLEFIKGDLEYLRKE 191 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + + A +++ P L++ + L++R +RD + E+++ + E K ++K +P Sbjct: 192 WARILDKAESALVPALLHRDLGLLQRFLRDAFDPLHDELVIDSKLKGEETKSYLKETVPG 251 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V Y + PIF G++ Q+ + ++TLP ++++QTEA+ IDVN+ + Sbjct: 252 MEPKVTYYSEGGPIFQAYGLDEQMRASFARKITLPEGVTIVVDQTEAMTIIDVNTAKYIG 311 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 E+T L+TNL AA++IAR LRL D+ G+I+VDFIDM+ +++ + V ++ ++KDR Sbjct: 312 GDNFEETVLKTNLLAAQQIARILRLWDIGGIIIVDFIDMDHEEHRQQVVSVMEAVMRKDR 371 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 + V + GLLEM+R++ R S K C C G G + Sbjct: 372 TKSFVVGWTKLGLLEMTRKKARESSSLPFAKPCGTCGGRGVV 413 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 11 HVE-ET-RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 H E ET ++ ++ D R+ E E ++ + G+ Y +V V P +QAAFVD G ++ F Sbjct: 12 HCEHETIQMALIEDGRLAEFAVERSREQSVVGSFYKGRVVNVLPGMQAAFVDIGLKKNAF 71 Query: 69 LPFLEI-HPDYYQIPF 83 L ++ HP + P Sbjct: 72 LYIDDVLHPHLEKQPK 87 >gi|183983748|ref|YP_001852039.1| ribonuclease E Rne [Mycobacterium marinum M] gi|183177074|gb|ACC42184.1| ribonuclease E Rne [Mycobacterium marinum M] Length = 1017 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 114/359 (31%), Positives = 193/359 (53%), Gaps = 17/359 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 419 GEVNWDAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 478 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 479 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERWN 535 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A+ YEE +++ + IRDL+ +D + ++VSG+ + +++ + Sbjct: 536 QIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSV 595 Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE +F I+ QL +V LPS G ++I++TEA+ Sbjct: 596 APDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 655 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +DVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 656 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 715 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C +C G G + Sbjct: 716 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILLHADP 774 Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 362 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 421 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 422 NWDAAGLGGADRK 434 >gi|306780489|ref|ZP_07418826.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu002] gi|306789600|ref|ZP_07427922.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu004] gi|306793927|ref|ZP_07432229.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu005] gi|308326638|gb|EFP15489.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu002] gi|308333903|gb|EFP22754.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu004] gi|308337706|gb|EFP26557.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu005] Length = 915 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 370 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 429 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 430 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 486 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A + YEE +++ + IRDL+ +D +IVSG++ + +++ + Sbjct: 487 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 546 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 547 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 606 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 607 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 666 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L ESL +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 667 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 726 Query: 499 -VALSILRSVEEYLLQY 514 A + R E + Sbjct: 727 DSAAATGRKSEPGARRG 743 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 313 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 372 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 373 NWDAAGLGGADRK 385 >gi|25028828|ref|NP_738882.1| putative ribonuclease [Corynebacterium efficiens YS-314] gi|259507890|ref|ZP_05750790.1| ribonuclease E [Corynebacterium efficiens YS-314] gi|23494114|dbj|BAC19082.1| putative ribonuclease [Corynebacterium efficiens YS-314] gi|259164524|gb|EEW49078.1| ribonuclease E [Corynebacterium efficiens YS-314] Length = 1148 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 139/586 (23%), Positives = 242/586 (41%), Gaps = 29/586 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ Q +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 426 GEVDWKAAGLGGRGRRIEQALKSGQKVLVQVTKDPVGHKGARLTTQISLAGRYLVYVPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ LKEI + P G G I+RTA ++ I D L LW+ Sbjct: 485 GRSAGISRKLPGPERKR-LKEILGRVVPPQG-GTIIRTAAEGVSEENIAADVNRLHTLWE 542 Query: 274 NVRELALNSV-----APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++E P +YEE +++ + IRDL+ +D + +IV G++ + + +++ + Sbjct: 543 QIQERTKQEKKSRNTRPVTMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSV 602 Query: 329 MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P V ++ F G+ QL+ +V LPS G +II++TEA+ ID+ Sbjct: 603 APDLVSRVEHFDRADYDGKDAFEAFGLNTQLEEAMSRKVNLPSGGSLIIDKTEAMTVIDI 662 Query: 385 NSGRSTREH--CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 N+GR + +E+T N+EAAEEI RQLRLRD+ G+IV+DFIDM +N V ++ Sbjct: 663 NTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGMIVIDFIDMVLPENRDLVLRR 722 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L E+L+ DR R QV +++ GL++M+R+RI + +LE+ + C +C G G + V Sbjct: 723 LNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSECEHCAGRGLVIHPDPVDNV 782 Query: 503 ILR---SVEEYLLQYTAHNIIVHTHSDV-----------VLYLLNQKRATIVEYEARFGV 548 R EE ++ V + L+ + + + Sbjct: 783 DERVEAKAEERARRHKNQQEDSRPQQPVRDPARHPMVVAMQDLVEDEDHDLDKEFEDLAA 842 Query: 549 SINVVIGIELADKLF-YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 S+ + E ++ + + + + + + P Sbjct: 843 SVIITDDAEDTADTAGTVDTADDTEPEITADEVISTVEPEEGPRRRARRRRGRQQETPET 902 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 E + + + + ++ F+ Sbjct: 903 PVEPEATGDTTADDIAAIAAAAVDIADAEDPDEPSGANYVSDAAGAATSYEQALAEFEAS 962 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 T N + A + P ++ Sbjct: 963 PRRRRATRGNSRSDHAPKPEDFKSEPARREVEPIPVEEIGEAEEKP 1008 Score = 87.3 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%) Query: 1 MANKMLIDASHVEE-----TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55 M +M++ + T+V VL D+ + E S+ + + GNIYL +V V PS++ Sbjct: 350 MERRMIVRERQRTDGTGLVTQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSME 409 Query: 56 AAFVDYGGNRHGFLPFLEI 74 AAF+D G R+G L E+ Sbjct: 410 AAFIDIGKGRNGVLYAGEV 428 >gi|326382839|ref|ZP_08204529.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395] gi|326198429|gb|EGD55613.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395] Length = 1039 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 139/526 (26%), Positives = 236/526 (44%), Gaps = 25/526 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 500 GEVNWEAAGLDGGSRKIEQALKPGDYVLVQVSKDPIGHKGARLTTQISLAGRYLVYVPG- 558 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ + VP GVI+RTA + E+ D E L W Sbjct: 559 GTSTGISRKLPDTERKR--LKQILAKLVPDEAGVIIRTASEGVSAEELGADIERLEAQWK 616 Query: 274 NVR-----ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++ + S P +YEE +L+ R +RDL+ +D +++V G++ + + +++ + Sbjct: 617 SIEAAADGHRSKASGTPKALYEEPDLLVRVVRDLFNEDFRKLVVEGDRAWSQVSGYVRDV 676 Query: 329 MPSYARIVRQYEDPH----PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P + + ++ H F I+ QL +V LPS G +II TEA+ +DV Sbjct: 677 APDLSERLEEFTKNHADAPDSFAVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDV 736 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRD+ G+I+VDFIDM + N V ++L Sbjct: 737 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRL 796 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L +DR R QV +++ GL++M+R+R+ + +LE+ + CT C G G I + V + Sbjct: 797 TEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTACSGRGVIVHANPVEVRP 856 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + + + T + +F Sbjct: 857 SEDSNRGGGSGESGSRRSRRSRKRGGDQPQSQTPTQQPESPKAAHK------PAAEHPMF 910 Query: 564 YI----EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 ++ +V + P + E V ++A ++ + E Sbjct: 911 RAMAHPDEHDEATEVVEHADTAVVEQAEPVVAEQAEPVAVEQA--ERVETPAPEPSAPEA 968 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 E + R+RR RR P T V+ + + V S + Sbjct: 969 PEEPAVVTRRRRRAVRRAAAPTTVAEPVAEVARQAPVTTVAQQSSE 1014 Score = 101 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 12 VEE--TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69 E T++ VL D + E +E + + GNIYL +V V P ++AAFVD G R+G L Sbjct: 438 PTEDYTQIAVLEDGVLVEHFVTTETSQSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVL 497 Query: 70 PFLEIHPD 77 E++ + Sbjct: 498 YAGEVNWE 505 >gi|227547009|ref|ZP_03977058.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212541|gb|EEI80430.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 477 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 195/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 67 GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 126 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA ++ I +D E L+R W+ Sbjct: 127 GMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWE 183 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ D S++IV G+K Y ++++ + P Sbjct: 184 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAP 243 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 244 DLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 303 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N V ++L E Sbjct: 304 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 363 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 364 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTV 418 Score = 99.3 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 10 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 69 Query: 75 HPD 77 + D Sbjct: 70 NWD 72 >gi|15609581|ref|NP_216960.1| ribonuclease E [Mycobacterium tuberculosis H37Rv] gi|31793625|ref|NP_856118.1| ribonuclease E [Mycobacterium bovis AF2122/97] gi|121638327|ref|YP_978551.1| putative ribonuclease E rne [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662279|ref|YP_001283802.1| putative cytoplasmic axial filament protein [Mycobacterium tuberculosis H37Ra] gi|148823646|ref|YP_001288400.1| ribonuclease E rne [Mycobacterium tuberculosis F11] gi|224990821|ref|YP_002645508.1| putative ribonuclease E [Mycobacterium bovis BCG str. Tokyo 172] gi|253798476|ref|YP_003031477.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 1435] gi|254232579|ref|ZP_04925906.1| ribonuclease E rne [Mycobacterium tuberculosis C] gi|289443970|ref|ZP_06433714.1| ribonuclease E rne [Mycobacterium tuberculosis T46] gi|289448088|ref|ZP_06437832.1| ribonuclease E rne [Mycobacterium tuberculosis CPHL_A] gi|289553764|ref|ZP_06442974.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 605] gi|289570599|ref|ZP_06450826.1| ribonuclease E rne [Mycobacterium tuberculosis T17] gi|289575139|ref|ZP_06455366.1| ribonuclease E rne [Mycobacterium tuberculosis K85] gi|289746227|ref|ZP_06505605.1| ribonuclease E rne [Mycobacterium tuberculosis 02_1987] gi|289751051|ref|ZP_06510429.1| ribonuclease E rne [Mycobacterium tuberculosis T92] gi|289754553|ref|ZP_06513931.1| ribonuclease E [Mycobacterium tuberculosis EAS054] gi|289758576|ref|ZP_06517954.1| ribonuclease E [Mycobacterium tuberculosis T85] gi|308374581|ref|ZP_07667816.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu006] gi|308375892|ref|ZP_07668143.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu007] gi|308379205|ref|ZP_07485488.2| ribonuclease E rne [Mycobacterium tuberculosis SUMu010] gi|308405114|ref|ZP_07494244.2| ribonuclease E rne [Mycobacterium tuberculosis SUMu012] gi|1666140|emb|CAB03775.1| POSSIBLE RIBONUCLEASE E RNE [Mycobacterium tuberculosis H37Rv] gi|31619218|emb|CAD97332.1| POSSIBLE RIBONUCLEASE E RNE [Mycobacterium bovis AF2122/97] gi|121493975|emb|CAL72452.1| Possible ribonuclease E rne [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601638|gb|EAY60648.1| ribonuclease E rne [Mycobacterium tuberculosis C] gi|148506431|gb|ABQ74240.1| putative cytoplasmic axial filament protein [Mycobacterium tuberculosis H37Ra] gi|148722173|gb|ABR06798.1| ribonuclease E rne [Mycobacterium tuberculosis F11] gi|224773934|dbj|BAH26740.1| putative ribonuclease E [Mycobacterium bovis BCG str. Tokyo 172] gi|253319979|gb|ACT24582.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 1435] gi|289416889|gb|EFD14129.1| ribonuclease E rne [Mycobacterium tuberculosis T46] gi|289421046|gb|EFD18247.1| ribonuclease E rne [Mycobacterium tuberculosis CPHL_A] gi|289438396|gb|EFD20889.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 605] gi|289539570|gb|EFD44148.1| ribonuclease E rne [Mycobacterium tuberculosis K85] gi|289544353|gb|EFD48001.1| ribonuclease E rne [Mycobacterium tuberculosis T17] gi|289686755|gb|EFD54243.1| ribonuclease E rne [Mycobacterium tuberculosis 02_1987] gi|289691638|gb|EFD59067.1| ribonuclease E rne [Mycobacterium tuberculosis T92] gi|289695140|gb|EFD62569.1| ribonuclease E [Mycobacterium tuberculosis EAS054] gi|289714140|gb|EFD78152.1| ribonuclease E [Mycobacterium tuberculosis T85] gi|308341387|gb|EFP30238.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu006] gi|308344874|gb|EFP33725.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu007] gi|308357755|gb|EFP46606.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu010] gi|308365309|gb|EFP54160.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu012] gi|323718952|gb|EGB28102.1| ribonuclease E rne [Mycobacterium tuberculosis CDC1551A] gi|326904059|gb|EGE50992.1| ribonuclease E rne [Mycobacterium tuberculosis W-148] gi|328458244|gb|AEB03667.1| ribonuclease E rne [Mycobacterium tuberculosis KZN 4207] Length = 953 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 408 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 467 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 468 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 524 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A + YEE +++ + IRDL+ +D +IVSG++ + +++ + Sbjct: 525 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 584 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 585 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 644 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 645 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 704 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L ESL +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 705 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 764 Query: 499 -VALSILRSVEEYLLQY 514 A + R E + Sbjct: 765 DSAAATGRKSEPGARRG 781 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 351 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 410 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 411 NWDAAGLGGADRK 423 >gi|332711238|ref|ZP_08431171.1| ribonuclease, Rne/Rng family [Lyngbya majuscula 3L] gi|332350052|gb|EGJ29659.1| ribonuclease, Rne/Rng family [Lyngbya majuscula 3L] Length = 662 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 143/472 (30%), Positives = 228/472 (48%), Gaps = 21/472 (4%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 +R I E++ +Q +LVQ++KE GNKG +T +SL GRY VLMP +G +SR+I Sbjct: 77 RRSGAITELLTPQQKVLVQVMKEPTGNKGPRLTGNISLPGRYLVLMP-YGRGVNLSRRIK 135 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + +R L+ L P+GMGV++RT R + I D E L + W+ V+ A ++ A Sbjct: 136 SESERNRLRA-LAILIKPSGMGVLVRTEAEGRAEEAIMEDLENLQKQWEAVQLEATSTRA 194 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+ + + I+R +RD+Y D++ I+V + K + A + Sbjct: 195 PALLNRDDDFIQRVLRDMYTADVNRIVVDSSTAVKRVKQHLLSWSGGQAPEGVLIDHHRD 254 Query: 345 IF---FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 + + + V LPS GY+II TEAL IDVNSG TR +T L Sbjct: 255 RMPILAYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLW 314 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TN EAA EIARQLRLR+LAG+IVVDFIDM+ +++ V + ++LK+D+AR Q+ +S Sbjct: 315 TNCEAATEIARQLRLRNLAGVIVVDFIDMDTRRDQLQVLEHFNQALKEDKARPQIAQLSE 374 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGY-------IRSQSSVALSILRSVEEYLLQY 514 GL+E++R+R ++ E K C C G G+ + +++ L+ + S E + Sbjct: 375 LGLVELTRKRQGQNIYELFGKACATCGGLGHLVHLPGEVEAEALETLAPIPSPTERSIPE 434 Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 + + +D L LLN + + + P+ Sbjct: 435 FPEPVELSPENDQELDLLNHPSYQERGAVNNRRRRRRRIDDP--------VIREEPITRG 486 Query: 575 VNTGHKVGSDSQA-PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 VN V S+ A + + V + + + + E E ++ + EE Sbjct: 487 VNRVISVSSNFDAITEAEVSTSGVEKPQLVKFAQEKEPPELVRVEMSPEEQD 538 Score = 77.3 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I H V +++++EL + + G+IYL V V P + AAFV+ Sbjct: 1 MPKQIIIAEQHQL---AAVFWEDQIQELVVATGNH--QVGDIYLGVVENVLPGIDAAFVN 55 Query: 61 YGG-NRHGFLPFLEIHP 76 G +R+GF+ ++ P Sbjct: 56 IGDPDRNGFIHVTDLGP 72 >gi|254365221|ref|ZP_04981267.1| ribonuclease E rne [Mycobacterium tuberculosis str. Haarlem] gi|134150735|gb|EBA42780.1| ribonuclease E rne [Mycobacterium tuberculosis str. Haarlem] Length = 953 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 196/377 (51%), Gaps = 19/377 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 408 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGA 467 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 468 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWE 524 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A + YEE +++ + IRDL+ +D +IVSG++ + +++ + Sbjct: 525 QIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSV 584 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 585 APELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 644 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 645 VIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 704 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L ESL +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 705 LRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 764 Query: 499 -VALSILRSVEEYLLQY 514 A + R E + Sbjct: 765 DSAAATGRKSEPGARRG 781 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 351 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 410 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 411 NWDAAGLGGADRK 423 >gi|282899031|ref|ZP_06307013.1| Ribonuclease E and G [Cylindrospermopsis raciborskii CS-505] gi|281196171|gb|EFA71086.1| Ribonuclease E and G [Cylindrospermopsis raciborskii CS-505] Length = 699 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 122/329 (37%), Positives = 187/329 (56%), Gaps = 5/329 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T +++ GRY VLMP KG +SR+I + +R Sbjct: 82 ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITMPGRYVVLMP-YGKGVNLSRRIKSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ +++ A ++ AP L+ Sbjct: 141 NRLRA-LAILIKPAGMGILVRTEAEGKPEEAIIEDLELLQKQWEVIQQEAASTRAPSLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346 + + I+R +RD+Y D++ I+V G R K +++ + PI Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLRRVKQYLQNWSGGQTPQGVLLDHHRDRSPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+IVVDFIDME +++ V + ++LK D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKTLKADKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 ++R+R ++ E + C C G G+I Sbjct: 380 LTRKRQGQNIYELFGESCPTCGGLGHIVH 408 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ ++ V +++++EL + H G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVTDLGP 72 >gi|302206708|gb|ADL11050.1| Ribonuclease E/G family [Corynebacterium pseudotuberculosis C231] gi|308276950|gb|ADO26849.1| Ribonuclease E/G family [Corynebacterium pseudotuberculosis I19] Length = 1134 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 142/594 (23%), Positives = 245/594 (41%), Gaps = 31/594 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ +LVQ+ K+ G+KGA +TT +S AGRY V +PN Sbjct: 415 GEVDWRAAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPN- 473 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P + + VP G I+RTA + + I D L +LW+ Sbjct: 474 GRTAGISRKLPAPERTR--LKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWN 531 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326 ++EL +YEE N++ + +RDL+ +D SE+IV G++ + +++ Sbjct: 532 QIQELTEKEKNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSV 591 Query: 327 --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 L + R+ + F ++ QL +V LPS G ++I++TEA+ IDV Sbjct: 592 APELQDRLIKFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 651 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 652 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMALSENQDLVLRRL 711 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L +DR R Q+ +++ GL++M+R+R+ + +LE+ C +C+G G I V S+ Sbjct: 712 TEALGRDRTRHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSV 771 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + E + + V + G +D Sbjct: 772 SDAAIEKSSRARSGKAKAARKHGVA---HQDPAQHPAAIAMQHHEEAGSAAGSNTSDAST 828 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + +K ++ V D A + + + + Sbjct: 829 ADTSLAADTRTSIDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLR 888 Query: 624 STGVIRKRRRRRR--------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI-- 673 ++ + R D + + N + S + Sbjct: 889 NSKRKDRGAADDVMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAA 948 Query: 674 -TNHNLLENGAHGFTENYDVSIP----PVSTPEMESSNSSSDPIVKKTRWWKRR 722 N + G + + P + E ++ + ++T RR Sbjct: 949 FENSPRRKRAVRGNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRR 1002 Score = 85.0 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E S+ + + GNIYL +V V PS++AAF+D G R+G L E+ Sbjct: 358 TQVGVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEV 417 >gi|302528915|ref|ZP_07281257.1| predicted protein [Streptomyces sp. AA4] gi|302437810|gb|EFL09626.1| predicted protein [Streptomyces sp. AA4] Length = 1054 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 220/477 (46%), Gaps = 15/477 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + +LVQ+ K+ G+KGA +TT +SL GR+ V +P Sbjct: 523 GEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAG 582 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ R+ + VP GVI+RTA ++ E+ RD + L WD Sbjct: 583 G-ATGISRKLPENERRR--LKDILKRIVPEDAGVIIRTASEGISEEELDRDVQRLKAQWD 639 Query: 274 NVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++E A AP ++YEE +L+ + +RDL+ +D +++ V G + +++ + Sbjct: 640 VIKEKASAGSAKKGGAPTMLYEEPDLLVKVVRDLFTEDFAKLEVQGSTAWETIHGYVQHV 699 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P +++Y F I+ Q+ +V LPS GY++I++TEA+ IDVN+G+ Sbjct: 700 APDLTDRLKRYTGNGDAFADHRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK 759 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLE+AEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L Sbjct: 760 FTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECL 819 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV-----ALS 502 +DR R QV +++ GL++M+R++I + +LE+ + C +CKG G + S Sbjct: 820 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPCEHCKGRGVVVSTEPQRTAGGGTG 879 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 + ++ + +++ + E V + + Sbjct: 880 NGHNGGNGHNGHSHGGGDTKSSRRSRGRGKGEEQHHEPKPEPAAPAPTPVQRE-SVVSAV 938 Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + S + + + + + + Q E P + Sbjct: 939 QAMANASKAKHEHHAPEAAEAKEPETAAQPSEQGEQQPEPKTEAPAPVQQPEPTQPE 995 Score = 96.2 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E S I GN+YL +V V PS++AAF+D G R+ L E+ Sbjct: 466 TQIAVLEDGVLVEHFVTSSGTGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEV 525 Query: 75 HPD 77 D Sbjct: 526 DWD 528 >gi|254371401|ref|ZP_04987402.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|151569640|gb|EDN35294.1| hypothetical protein FTBG_01460 [Francisella tularensis subsp. tularensis FSC033] Length = 464 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 119/390 (30%), Positives = 212/390 (54%), Gaps = 2/390 (0%) Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V +E S E+ K I + ++ Q +LVQ+VKE GNKG +T++LS++ Sbjct: 74 EVIPLEKEDDDSDENFKLKKLNTEDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSS 133 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ V +P+ + ++ L+ I + + G ILRTA + E++ D Sbjct: 134 RFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRTAAEGASYEELEND 193 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 ++L LW ++ +++ + P +VYE+ +LI + I ++ +I+V Y+E F Sbjct: 194 IKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILVDNIDSYKEICHF 253 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 +P + Y H IF IE +++ V L S GY++I QTEA+++ID+ Sbjct: 254 ADKYIPGLREKIELY-QKHNIFEEYDIENEINKALDKTVYLKSGGYLVIEQTEAMITIDI 312 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G +E+T +TNLEA +EIARQLRLR+L G+I++DFIDM ++ + V + LK Sbjct: 313 NTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALK 372 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + L+ D+A+ V IS GL+EM+R+R+ S+L + + C +C G G +++ ++ I Sbjct: 373 KELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGSVKTLQTICYDIF 432 Query: 505 RSVEEYLLQYTA-HNIIVHTHSDVVLYLLN 533 R ++ Y + ++ ++ + ++ Y+ N Sbjct: 433 REIKSESKNYPSYNDFLLISSEKIIDYIEN 462 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 41/63 (65%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E R+ + +N ++E+ E +++K+I GNIY K+ RV P +QAAFVD G + GFL E Sbjct: 15 EQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSE 74 Query: 74 IHP 76 + P Sbjct: 75 VIP 77 >gi|41408365|ref|NP_961201.1| Rne [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396721|gb|AAS04584.1| Rne [Mycobacterium avium subsp. paratuberculosis K-10] Length = 946 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 120/388 (30%), Positives = 196/388 (50%), Gaps = 19/388 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 401 GEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 460 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W Sbjct: 461 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWK 517 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A+ YEE +++ + IRDL+ +D + +IVSG+ + +++ + Sbjct: 518 QIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSV 577 Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P V +YE +F I+ QL +V LPS G ++I++TEA+ Sbjct: 578 APDLVSKVTKYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 637 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 638 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 697 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS- 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 698 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPV 757 Query: 499 -VALSILRSVEEYLLQYTAHNIIVHTHS 525 A S R E + Sbjct: 758 DSAPSNGRKSESGGRRGRRKKSKAEEPV 785 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 344 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 403 Query: 75 HPDYYQIPFSDRQ 87 + + + SDR+ Sbjct: 404 NWEAAGLGGSDRK 416 >gi|86134969|ref|ZP_01053551.1| ribonuclease, Rne/Rng family [Polaribacter sp. MED152] gi|85821832|gb|EAQ42979.1| ribonuclease, Rne/Rng family [Polaribacter sp. MED152] Length = 516 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 119/422 (28%), Positives = 203/422 (48%), Gaps = 10/422 (2%) Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + I++V+K Q LLVQIVKE KG +++ LS+AGR+ VL+P +++ Sbjct: 98 KNFRKEADINKDGSIKDVLKTGQNLLVQIVKEPISTKGPRLSSELSIAGRFLVLVPFSNR 157 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 + + + P G GVILRT + E+ +D + + W + Sbjct: 158 VSVSQKIADPKEKERLKR--LAKSIKPKGFGVILRTVAEGKKVAELDKDLQNSLERWKTM 215 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 + N+ P + E N +RD+ + + I+ + E E K++++ + P +I Sbjct: 216 CKRIPNTNTPTKILSELNRASSILRDVMNESFTNIVTNDETLKVEIKEYLQEIYPEKEKI 275 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG-RSTREHC 394 V+ ++ PIF + GIE Q+ + V++ Y++I TEAL IDVNSG RS + Sbjct: 276 VKLHKSTVPIFEKYGIERQIKTSFGKTVSMSKGAYLVIEHTEALHVIDVNSGNRSNKAGS 335 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 EDTAL+ NL +A EIARQL+LRD+ G+IVVDFIDM + +N + + LKE + DR + Sbjct: 336 QEDTALEVNLISATEIARQLQLRDMGGIIVVDFIDMHKAENRNKLFQHLKEQMALDRTKH 395 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE----- 509 ++ + FGL++++RQR+R + TT+ G + + + I +E+ Sbjct: 396 KILPPTKFGLVQITRQRVRPELSIKTTEPNPNKDGQ--VEAPIVLLDKIEADLEKFISKL 453 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + T I +H H + YL + ++ + I ++ + Sbjct: 454 ESSKSTNKKIQLHIHPFIAAYLTKGVNSVRFKWYLKHKKWITIIPRDAYTYLYYKFTSVK 513 Query: 570 PV 571 Sbjct: 514 EE 515 >gi|317124517|ref|YP_004098629.1| RNAse G [Intrasporangium calvum DSM 43043] gi|315588605|gb|ADU47902.1| RNAse G [Intrasporangium calvum DSM 43043] Length = 1012 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 119/358 (33%), Positives = 197/358 (55%), Gaps = 27/358 (7%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I+ + + Q +LVQ+ K+ G+KGA +T+ +SL GRY V +PN+S ISRK+ Sbjct: 472 NEPRRIENALSSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPNSSMTG-ISRKLP 530 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELA----- 279 + + K VP GVI+RTA ++ E++ D E L R W+++R A Sbjct: 531 DTERARLKK--ILREVVPDSAGVIVRTAAEGASEEELRADVERLSRTWEDIRARAELSGT 588 Query: 280 ------------------LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 AP L++ E +L R IRD++ +D +++V+G++ + E Sbjct: 589 PRAGKSKGRKKNGSPGSAPTGSAPLLLHGEPDLTVRVIRDVFNEDFKQLVVAGDQAWNEI 648 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 ++ + P A V ++ +F ++ QL +V LPS G ++I++TEA+ Sbjct: 649 HPYISSVAPDLADRVSRWTAEEDLFTHHRVDEQLAKAMDRKVWLPSGGSLVIDRTEAMTV 708 Query: 382 IDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +DVN+G+ +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V Sbjct: 709 VDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVV 768 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++L E L +DR + QV +++ GL++M+R+R+ S ++E ++ C +C G GY+ Sbjct: 769 RRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLIEVFSETCEHCNGRGYVIHADP 826 Score = 97.0 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + + GNIYL +V V PS++AAFVD G R+ L E+ Sbjct: 403 TQMGVLEDGVLVEHYIDQATNVSMAGNIYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV 462 Query: 75 HPD 77 + D Sbjct: 463 NWD 465 >gi|315645759|ref|ZP_07898883.1| ribonuclease, Rne/Rng family protein [Paenibacillus vortex V453] gi|315279237|gb|EFU42547.1| ribonuclease, Rne/Rng family protein [Paenibacillus vortex V453] Length = 396 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 105/342 (30%), Positives = 175/342 (51%), Gaps = 2/342 (0%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + K+ K++ I +++ Q L VQ++KE RG KGA VTT+ SL GR V MP Sbjct: 55 IDDVLHPHLEKQPKQKPSISQLLTVGQELTVQVMKEPRGGKGARVTTHFSLPGRCMVYMP 114 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + + + G+I+RT + D EYL + Sbjct: 115 TADYVAVSKKIGREAERAR--LKSIGEQLRTDEEGIIIRTVSEDEPLEFLSGDLEYLRKE 172 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W + E A +S AP L++ + L++R IRD + E+++ E K ++K +P Sbjct: 173 WTRILEKAESSSAPALLHRDLGLLQRFIRDSFDPLHDELVIDSLLKGEETKSYLKETVPG 232 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 V + PIF G++ Q+ + ++TLP ++++QTEA+ +DVN+ + Sbjct: 233 MEPKVTYHTGGGPIFQAYGLDEQMKAGFARKITLPEGVTIVVDQTEAMTIMDVNTAKYIG 292 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 E+T L+TNL AA++IAR LRL D+ G+I+VDFIDM+ +++ + V ++ ++KDR Sbjct: 293 GDNFEETVLKTNLMAAQQIARTLRLWDIGGIIIVDFIDMDREEHRQQVVSVMEAVMRKDR 352 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 + V + GLLEM+R++ R + K C C G G + Sbjct: 353 TKSFVVGWTKLGLLEMTRKKARENSSLPFAKPCVNCGGKGIV 394 Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI-H 75 + ++ D R+ E E ++ + G+ Y +V V P +QAAFVD G ++ FL ++ H Sbjct: 1 MALIEDGRLAEFAVERSREESVVGSFYKGRVVNVLPGMQAAFVDIGLKKNAFLYIDDVLH 60 Query: 76 PDYYQIPF 83 P + P Sbjct: 61 PHLEKQPK 68 >gi|312140345|ref|YP_004007681.1| ribonuclease e and g [Rhodococcus equi 103S] gi|311889684|emb|CBH49001.1| putative ribonuclease E and G [Rhodococcus equi 103S] Length = 1157 Score = 207 bits (525), Expect = 6e-51, Method: Composition-based stats. Identities = 133/502 (26%), Positives = 230/502 (45%), Gaps = 29/502 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + R+ I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 568 GEVNWEAAGLGGRERKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 626 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ LKEI R + GVI+RTA ++ E+ RD L W Sbjct: 627 GTSTGISRKLPDTERKR-LKEILREIVPA-DAGVIIRTASEGVSEEELSRDVTRLQTQWA 684 Query: 274 NVRELALNSVA-----PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + E A + P +YEE +L+ + +RDL+ +D S++++ GEK + + ++K + Sbjct: 685 TIEEQAAKAKDGKSGSPQALYEEPDLLVKVVRDLFNEDFSKLVIEGEKAWNTVETYIKTV 744 Query: 329 MPSYARIVRQYED---PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 P V +++ +F I+ QL +V LPS G ++I++TEA+ +DVN Sbjct: 745 APDLLPRVERHDPAPGTPDVFETHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVN 804 Query: 386 SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 +G+ T +E+T + NLEAAEEI RQ+RLRD+ G+IV+DFIDM + N V ++L Sbjct: 805 TGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVIDFIDMVLESNRDLVLRRLT 864 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS-- 502 ESL +DR R QV +++ GL++++R+++ + ++E+ + C +C G G I V Sbjct: 865 ESLGRDRTRHQVSEVTSLGLVQVTRKKLGTGLVEAFSTTCEHCHGRGIIVHTEPVETKSS 924 Query: 503 ---------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 S + T + N + A EA ++ Sbjct: 925 DDGGRGQGQGKESGGGGRKKRGRDRAAAATPAPTPEPESNGQHAHPSAEEAAADATVK-R 983 Query: 554 IGI-----ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 G + + ++ + + D P + Sbjct: 984 AHPVALAMASHHPDHDPSGGPAAEEAAPAAEEAAPAAEDATQTSPADVAQPDTVETPRTE 1043 Query: 609 SESLEDIQDNIVSEESTGVIRK 630 E+ + Q + + Sbjct: 1044 PEATPEPQATAEPTSESAPEPE 1065 Score = 96.6 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E + GN+YL +V V PS++AAF+D G R+G L E+ Sbjct: 511 TQVAVLEDGVLVEHFVTGSSSTSMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 570 Query: 75 HPD 77 + + Sbjct: 571 NWE 573 >gi|296394163|ref|YP_003659047.1| ribonuclease, Rne/Rng family [Segniliparus rotundus DSM 44985] gi|296181310|gb|ADG98216.1| ribonuclease, Rne/Rng family [Segniliparus rotundus DSM 44985] Length = 827 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 192/365 (52%), Gaps = 11/365 (3%) Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 +N G + I+ IK LLVQ+ K+ G+KGA +TT ++LAGRY Sbjct: 386 NNAVLYAGEVNWEGVGLGGDARKIEHAIKPGDYLLVQVNKDPVGHKGARLTTQIALAGRY 445 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF- 265 V +P S + ISRK+ + + VP GVI+RTA + + D Sbjct: 446 LVFVPGAS-AKGISRKLPDTERNR--LREILSGIVPEDAGVIVRTASEGVSAEHLTEDVT 502 Query: 266 ---EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 E R+ E P +Y E +L+ + IRD++ +D + ++V GE Y + Sbjct: 503 RLAEQWQRIQQLAEEAKAQGGGPRSLYREPDLLVKLIRDVFNEDFARLVVQGEGPYEVVQ 562 Query: 323 DFMKLLMPSYARIVRQYED---PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 +++ + P + ++E +F ++ QL +V LPS G ++I++TEA+ Sbjct: 563 EYLSAIAPELGERLERFEPAEDGQDVFSAYRVDEQLAKALGRKVWLPSGGTLVIDRTEAM 622 Query: 380 VSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 +DVN+G+ +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N Sbjct: 623 TVVDVNTGKFVGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNREL 682 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 V ++L E L +DR R QV +++ GL++M+R+RI + +LE+ + C++C+G G + Sbjct: 683 VLRRLTECLARDRTRHQVSEVTSLGLVQMTRKRIGTGLLEAFSNKCSHCEGRGVVVHSDP 742 Query: 499 VALSI 503 + + Sbjct: 743 LGTEL 747 Score = 91.6 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL DN + E + + GNIYL +V V PS++AAFVD G + L E+ Sbjct: 336 TQIGVLEDNILVEHFVTTSASASMVGNIYLGRVQNVLPSMEAAFVDIGRGNNAVLYAGEV 395 Query: 75 HPD 77 + + Sbjct: 396 NWE 398 >gi|315655494|ref|ZP_07908393.1| ribonuclease E and G [Mobiluncus curtisii ATCC 51333] gi|315490149|gb|EFU79775.1| ribonuclease E and G [Mobiluncus curtisii ATCC 51333] Length = 804 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 139/566 (24%), Positives = 252/566 (44%), Gaps = 26/566 (4%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 + R+ + +E + + D+ + G + + + N + + S Sbjct: 230 ARRENVKREMVVRERDNLNQIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEA 289 Query: 144 -----DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTT 198 N G D + I+E + ++LVQ+ K+ G+KGA +T+ Sbjct: 290 AFVDIGKGRNAVLYAGEVNWDAAGLNAKTGRIEEALNPGDLVLVQVTKDPIGHKGARLTS 349 Query: 199 YLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTK 258 ++LAGR+ VL+P+ + ISRK+ ++ + +PAG GVI+RTA T+ Sbjct: 350 QITLAGRHLVLVPSGAMTG-ISRKLPEEERKR--LKALLKTMIPAGYGVIVRTAAEGATE 406 Query: 259 IEIKRDFEYLMRLWDNVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 +++ D E L R+W+ + P L++ E L R +RD++ +D + + G+ Sbjct: 407 EQLRADVERLTRIWEEIETKQRKTRNGPVLLHGEPELAVRVVRDIFNEDFRSLTIQGDNA 466 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++ +++ L P ++ +E IF I+ QL + +V LPS GY+II++TE Sbjct: 467 WKTISKYVRDLSPELKDRLKHWEGEDDIFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTE 526 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ IDVN+GR +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N Sbjct: 527 AMTVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNR 586 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR R QV +++ GL++M+R+R+ ++E+ + C C G G+I Sbjct: 587 DLVLRRLVECLGRDRTRHQVTEVTSLGLIQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 646 Query: 497 SSVALS-------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 V + + S + + + V + R T+ ++ Sbjct: 647 VPVENNGQAPEDVVSHSSGRRGSTSGTSSKRGRSRAKSVKETNPEVRQTMAA------IA 700 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 E + + S ++ PS +K E + Sbjct: 701 TAAHASEEHEPPA---TALESHSSRSVEPKLLTSSTEKPSLEKAAEKPSIERGTEKPALD 757 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRR 635 + ++ + + +RR RR Sbjct: 758 GAQARLELTEAETPAENTVPRRRHRR 783 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ VL D + E ++ GN+YL KV V S++AAFVD G R+ L E++ Sbjct: 249 QIAVLEDGLLVEHYVSRHTQETAVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 308 Query: 76 PD 77 D Sbjct: 309 WD 310 >gi|300859010|ref|YP_003783993.1| ribonuclease E [Corynebacterium pseudotuberculosis FRC41] gi|300686464|gb|ADK29386.1| ribonuclease E [Corynebacterium pseudotuberculosis FRC41] gi|302331261|gb|ADL21455.1| Ribonuclease E/G family [Corynebacterium pseudotuberculosis 1002] Length = 1134 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 142/594 (23%), Positives = 245/594 (41%), Gaps = 31/594 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ +LVQ+ K+ G+KGA +TT +S AGRY V +PN Sbjct: 415 GEVDWRAAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPN- 473 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P + + VP G I+RTA + + I D L +LW+ Sbjct: 474 GRTAGISRKLPAPERTR--LKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWN 531 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326 ++EL +YEE N++ + +RDL+ +D SE+IV G++ + +++ Sbjct: 532 QIQELTEKEKNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSV 591 Query: 327 --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 L + R+ + F ++ QL +V LPS G ++I++TEA+ IDV Sbjct: 592 APELQDRLIKFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 651 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 652 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMALSENQDLVLRRL 711 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E+L +DR R Q+ +++ GL++M+R+R+ + +LE+ C +C+G G I V S+ Sbjct: 712 TEALGRDRTRHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSV 771 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + E + + V + G +D Sbjct: 772 SDAAIEKSSRARSGKAKAARKHGVA---HQDPAQHPAAIAMQHHEEAGSAAGSNTSDAST 828 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + +K ++ V D A + + + + Sbjct: 829 ADTSPAADTRTSIDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLR 888 Query: 624 STGVIRKRRRRRR--------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI-- 673 ++ + R D + + N + S + Sbjct: 889 NSKRKDRGAADDVMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAA 948 Query: 674 -TNHNLLENGAHGFTENYDVSIP----PVSTPEMESSNSSSDPIVKKTRWWKRR 722 N + G + + P + E ++ + ++T RR Sbjct: 949 FENSPRRKRAVRGNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRR 1002 Score = 85.0 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E S+ + + GNIYL +V V PS++AAF+D G R+G L E+ Sbjct: 358 TQVGVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEV 417 >gi|300869451|ref|ZP_07114035.1| ribonuclease [Oscillatoria sp. PCC 6506] gi|300332543|emb|CBN59233.1| ribonuclease [Oscillatoria sp. PCC 6506] Length = 797 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 117/327 (35%), Positives = 185/327 (56%), Gaps = 5/327 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++L GRY VLMP +G +SR+I + +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRIKSENER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT T+ I D E L + W+ V++ ++ AP L+ Sbjct: 141 NRLRA-LAILVKPAGMGLLVRTEAEGMTEEAIIEDLEVLQKQWEAVQQEGSSTRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346 + + I+R +RD++ D++ I+V + G + K + + + P+ Sbjct: 200 RDDDFIQRVLRDMFSNDVNRIVVDSQNGIKRVKQHLMAWNGNKLPPGVLIDHHRERIPML 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRVNPAIREALRPRVDLPSGGYIIIQPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+I+VDFIDME +++ V + ++L+ D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIAGVIIVDFIDMESRRDQLQVLEHFNKALRADKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI 493 ++R+R ++ E C C G G++ Sbjct: 380 LTRKRQGQNIYELFGHTCPSCGGLGHL 406 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R V +++++EL + +IYL V V P + AAFV Sbjct: 1 MPKQIVI----AEQHRLAAVFSEDQIQELVVATGSH--QVSDIYLGIVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G +R+GF+ ++ P Sbjct: 55 NIGDPDRNGFMHVTDLGP 72 >gi|291457090|ref|ZP_06596480.1| putative cytoplasmic axial filament protein [Bifidobacterium breve DSM 20213] gi|291380925|gb|EFE88443.1| putative cytoplasmic axial filament protein [Bifidobacterium breve DSM 20213] Length = 477 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 109/355 (30%), Positives = 194/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 67 GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 126 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA ++ I +D E L+R W+ Sbjct: 127 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWE 183 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ D ++IV G+K Y ++++ + P Sbjct: 184 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYGRIEEYLDTMAP 243 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 244 DLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 303 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N V ++L E Sbjct: 304 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 363 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 364 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTV 418 Score = 98.9 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 10 TQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 69 Query: 75 HPD 77 + D Sbjct: 70 NWD 72 >gi|153847015|ref|ZP_01993907.1| ribonuclease E [Vibrio parahaemolyticus AQ3810] gi|149744847|gb|EDM56227.1| ribonuclease E [Vibrio parahaemolyticus AQ3810] Length = 211 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 102/208 (49%), Positives = 141/208 (67%) Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 + Q++S Q EV LPS G ++I+ TEAL SID+NS R+T+ IE+TAL TNLEAA+EI Sbjct: 4 AQSQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEI 63 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQLRLRDL GL+V+DFIDM ++ R VE +L+E+++ DRARVQ+G IS FGLLEMSRQ Sbjct: 64 ARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMSRQ 123 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R+ S+ E++ +C C G G +R S+ALS+LR +EE L+ ++ + Y Sbjct: 124 RLSPSLAEASHHICPRCSGTGVVRDNESLALSVLRLIEEEALKDNTAQVLAVVPVPIASY 183 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIEL 558 LLN+KR ++ E V I VV ++ Sbjct: 184 LLNEKRRSVNHIERIQEVKITVVPNSDM 211 >gi|325677079|ref|ZP_08156748.1| rne/Rng family ribonuclease [Rhodococcus equi ATCC 33707] gi|325552064|gb|EGD21757.1| rne/Rng family ribonuclease [Rhodococcus equi ATCC 33707] Length = 1078 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 121/354 (34%), Positives = 202/354 (57%), Gaps = 12/354 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + R+ I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 489 GEVNWEAAGLGGRERKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 547 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ LKEI R + GVI+RTA ++ E+ RD L W Sbjct: 548 GTSTGISRKLPDTERKR-LKEILREIVPA-DAGVIIRTASEGVSEEELSRDVTRLQTQWA 605 Query: 274 NVRELALNSVA-----PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + E A + P +YEE +L+ + +RDL+ +D S++++ GEK + + ++K + Sbjct: 606 TIEEQAAKAKDGKSGSPQALYEEPDLLVKVVRDLFNEDFSKLVIEGEKAWNTVETYIKTV 665 Query: 329 MPSYARIVRQYED---PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 P V +++ +F I+ QL +V LPS G ++I++TEA+ +DVN Sbjct: 666 APDLLPRVERHDPAPGTPDVFETHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVN 725 Query: 386 SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 +G+ T +E+T + NLEAAEEI RQ+RLRD+ G+IV+DFIDM + N V ++L Sbjct: 726 TGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVIDFIDMVLESNRDLVLRRLT 785 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ESL +DR R QV +++ GL++++R+++ + ++E+ + C +C G G I Sbjct: 786 ESLGRDRTRHQVSEVTSLGLVQVTRKKLGTGLVEAFSTTCEHCHGRGIIVHTEP 839 Score = 96.6 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E + GN+YL +V V PS++AAF+D G R+G L E+ Sbjct: 432 TQVAVLEDGVLVEHFVTGSSSTSMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEV 491 Query: 75 HPD 77 + + Sbjct: 492 NWE 494 >gi|108800517|ref|YP_640714.1| ribonuclease [Mycobacterium sp. MCS] gi|119869656|ref|YP_939608.1| ribonuclease [Mycobacterium sp. KMS] gi|108770936|gb|ABG09658.1| ribonuclease, Rne/Rng family [Mycobacterium sp. MCS] gi|119695745|gb|ABL92818.1| ribonuclease, Rne/Rng family [Mycobacterium sp. KMS] Length = 991 Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats. Identities = 130/431 (30%), Positives = 218/431 (50%), Gaps = 18/431 (4%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 D+ A+ AV +D + + + S V I + S+ +A Sbjct: 356 VRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAF 415 Query: 143 NDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 D+ V G + + I++ +K ++VQ+ K+ G+KGA +TT + Sbjct: 416 VDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQV 475 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGRY V +P S ISRK+ + ++ + VPA GVI+RTA + + Sbjct: 476 SLAGRYLVYVPGASSTG-ISRKLPDTERQR--LKEILREVVPADAGVIIRTASEGVKEDD 532 Query: 261 IKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 I+ D L W + A + A +YEE +++ + IRDL+ +D S +IVSG+ Sbjct: 533 IRSDVNRLQERWTQIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGD 592 Query: 316 KGYREAKDFMKLLMPSYARIVRQYED-------PHPIFFRSGIEVQLDSLHQTEVTLPSR 368 + + +++ + P + +YE +F I+ QL +V LPS Sbjct: 593 EAWNTINSYVESVAPDLMPRLTKYEPAGNPNGEGPDVFAVHRIDEQLAKAMDRKVWLPSG 652 Query: 369 GYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G ++I++TEA+ +DVN+G+ T +E T + NLEAAEEI RQLRLRD+ G+IV+DF Sbjct: 653 GTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDF 712 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM + N V ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C +C Sbjct: 713 IDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHC 772 Query: 488 KGAGYIRSQSS 498 G G + Sbjct: 773 AGRGIVLHGDP 783 Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 372 TQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 431 Query: 75 HPD 77 + + Sbjct: 432 NWE 434 >gi|256832877|ref|YP_003161604.1| ribonuclease, Rne/Rng family [Jonesia denitrificans DSM 20603] gi|256686408|gb|ACV09301.1| ribonuclease, Rne/Rng family [Jonesia denitrificans DSM 20603] Length = 1018 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 121/350 (34%), Positives = 197/350 (56%), Gaps = 4/350 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G DV + I+E +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY V +P Sbjct: 516 GEVNWDVHGIEGQPRRIEEALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVYVPGG 575 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + + + V G GVI+RTA ++ E++ D E L + W Sbjct: 576 GMTG-ISRKLPDTERARLKR--ILKELVDEGSGVIVRTAAEGASETELRADVERLKKQWA 632 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + + N+ AP L+ E +L R +RD++ D +++ V G++ + E +++ L P A Sbjct: 633 AIEKKRKNANAPALLQGEPDLAIRVVRDIFNDDFTQLSVQGDQAWGEISEYVGDLAPDLA 692 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 + ++ IF + I+ QL +V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 693 NKMSRWTSEDDIFAAARIDEQLAKGLDRKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGTG 752 Query: 394 CI-EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L +DR Sbjct: 753 GTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRT 812 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 + QV +++ GL++M+R+R+ ++E+ + C +C G GY V Sbjct: 813 KHQVAEVTSLGLVQMTRKRVGQGLIEAFSTACDHCSGRGYTIHTDPVERH 862 Score = 97.4 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + + I GN+YL +V V PS++AAFVD G R+ L E+ Sbjct: 459 TQIAVLEDGILVEHYVSQQEQASIAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV 518 Query: 75 HPDYYQI---PFSDRQALL 90 + D + I P +AL Sbjct: 519 NWDVHGIEGQPRRIEEALK 537 >gi|116072123|ref|ZP_01469391.1| Ribonuclease E and G [Synechococcus sp. BL107] gi|116065746|gb|EAU71504.1| Ribonuclease E and G [Synechococcus sp. BL107] Length = 651 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 173/324 (53%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P+ G ISR+I+ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPH-GLGVNISRRISAEAER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G G+++RT ++ + D E L+R W+ +++ A SV P L+ Sbjct: 141 NRLRA-LGVLIKPPGAGLLIRTEAEGISEELLIDDLEALLRQWEAIQQAAETSVPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD D++ ++V F+ + Sbjct: 200 RDEDFIHRILRDHMGPDLARVVVDDPAAVSRVGSFLGSEHGNVVVESHDESTELL--EHY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 I + + V LPS GYVII TEAL IDVNSG TR +T L TN+EAA E Sbjct: 258 KINAAIRDALRPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNVEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDM+ +++ + + + + D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTATRDDSARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E + C C G G++ Sbjct: 378 KRQGQNIYELFARACPSCGGLGHV 401 Score = 84.6 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ VL D RV+EL + G++YL V V P + AAFV Sbjct: 1 MSQQIVI----AEQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVTDLGP 72 >gi|126436133|ref|YP_001071824.1| ribonuclease [Mycobacterium sp. JLS] gi|126235933|gb|ABN99333.1| ribonuclease, Rne/Rng family [Mycobacterium sp. JLS] Length = 987 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 130/431 (30%), Positives = 218/431 (50%), Gaps = 18/431 (4%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 D+ A+ AV +D + + + S V I + S+ +A Sbjct: 356 VRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAF 415 Query: 143 NDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 D+ V G + + I++ +K ++VQ+ K+ G+KGA +TT + Sbjct: 416 VDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQV 475 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 SLAGRY V +P S ISRK+ + ++ + VPA GVI+RTA + + Sbjct: 476 SLAGRYLVYVPGASSTG-ISRKLPDTERQR--LKEILREVVPADAGVIIRTASEGVKEDD 532 Query: 261 IKRDFEYLMRLWDNVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 I+ D L W + A + A +YEE +++ + IRDL+ +D S +IVSG+ Sbjct: 533 IRSDVNRLQERWTQIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGD 592 Query: 316 KGYREAKDFMKLLMPSYARIVRQYED-------PHPIFFRSGIEVQLDSLHQTEVTLPSR 368 + + +++ + P + +YE +F I+ QL +V LPS Sbjct: 593 EAWNTINSYVESVAPDLMPRLTKYEPAGNPNGEGPDVFAVHRIDEQLAKAMDRKVWLPSG 652 Query: 369 GYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G ++I++TEA+ +DVN+G+ T +E T + NLEAAEEI RQLRLRD+ G+IV+DF Sbjct: 653 GTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDF 712 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 IDM + N V ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C +C Sbjct: 713 IDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHC 772 Query: 488 KGAGYIRSQSS 498 G G + Sbjct: 773 AGRGIVLHGDP 783 Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 372 TQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 431 Query: 75 HPD 77 + + Sbjct: 432 NWE 434 >gi|113474351|ref|YP_720412.1| ribonuclease [Trichodesmium erythraeum IMS101] gi|110165399|gb|ABG49939.1| ribonuclease, Rne/Rng family [Trichodesmium erythraeum IMS101] Length = 682 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 121/360 (33%), Positives = 194/360 (53%), Gaps = 4/360 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++L GRY VLMP +G +SR+I++ +R Sbjct: 82 ITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLVLMP-YGRGVNLSRRISSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + I D E L + W+ ++ A ++ AP L+ Sbjct: 141 NRLRA-LAILIKPAGMGLLVRTEAEGMEEEAILEDLEVLQQQWEIIQIEANSNRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS--YARIVRQYEDPHPIFF 347 + + I+R +RD+Y D++ I+V +G + K + ++ + D PI Sbjct: 200 RDNDFIQRVLRDMYSTDVNRIVVDYSEGVKRVKQHLLNWSGGKPLQVLIDHHGDRIPILE 259 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 + + + V LPS GYVII TEAL IDVNSG TR +T L TN EAA Sbjct: 260 YFRVNAAIREALRPRVDLPSGGYVIIQPTEALTVIDVNSGSFTRSATARETVLWTNCEAA 319 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 EIARQLRLR++AG+I+VDFIDM+ +++ V + + L+ D+AR Q+ +S GL+E+ Sbjct: 320 TEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNQVLRADKARPQIAQLSELGLVEL 379 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R+R ++ E + C C G G++ + + V ++ + V Sbjct: 380 TRKRQGQNIYELFGRNCPSCNGLGHLVHLPGESEVSIGDVNLSVVNRNVDAEELTKPVAV 439 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ V +++++EL +IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHRIAAVFSEDQIQELVV--AKGSHQVSDIYLGTVENVIPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVSDLGP 72 >gi|186684021|ref|YP_001867217.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466473|gb|ACC82274.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102] Length = 719 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 145/574 (25%), Positives = 242/574 (42%), Gaps = 40/574 (6%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +LVQ++KE G KG +T ++L GRY VLMP +G +SR+I + +R Sbjct: 82 ITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVVLMP-YGRGVNLSRRIKSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ +++ A ++ AP L+ Sbjct: 141 NRLRA-LAILVKPAGMGLLVRTEAEGKPEEAIMEDLELLQKQWEAIQQEAHSTRAPALLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI---VRQYEDPHPIF 346 + + I+R +RD+Y D++ I+V G + K +++ + + D PI Sbjct: 200 RDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSGGQTPQGLLIDHHRDRSPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRISAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+IVVDFIDME +++ V + + LK D+AR Q+ ++ GL+E Sbjct: 320 ATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKGLKADKARPQIAQLTELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R+R ++ E + C C G G+ + L E + ++ Sbjct: 380 LTRKRQGQNIYELFGETCPTCGGLGHTVRLPGELENRLPIPAETPERERFVSLPHREPRQ 439 Query: 527 VVLYLLNQKRATIVEYEARFG----VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 + + EA G ++N++ T + Sbjct: 440 PSARVPEPRETYDGFGEAFDGDSESTNLNLINHPSYQ---------ELNDNKRRTRTRRS 490 Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR---RRRRRRR 639 K+ V + L+ + V+ E + R R Sbjct: 491 RIGINGLNGKDESRVIANPLAFANEPDLDLDIEPELGVTPEIPSPTLGKPGWNERVERTV 550 Query: 640 PATDHHDAGVVSDVSSIQNVID-------------------DSFDMYMEPSDITNHNLLE 680 V V + + ++ + N+++ Sbjct: 551 ERAKVIKPEPVKPVVEPPEIRTVEMSLQEQDMFALMGISPLVKLEQEVKNTKSVIINVIQ 610 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 G T +S P++ + ++ PI K Sbjct: 611 PGQVRTTPTESISESPIAQKVIPEVVATKSPIPK 644 Score = 79.6 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ ++ V +++++EL + H G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHQIAAVFSEDQIQELVVATGHH--QIGDIYLGVVENVLPGIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDPERNGFIHVTDLGP 72 >gi|24460044|dbj|BAC22655.1| C-terminal reagion of putative cytoplasmic axial filament protein [Comamonas sp. NCIMB 9872] Length = 234 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 120/229 (52%) Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 R + PIF I+ ++ V L S GY+I++QTEAL +IDVN+G + Sbjct: 3 RCNKGERPIFDLYNIDEEIARALGRRVDLKSGGYLIVDQTEALTTIDVNTGGYVGARNFD 62 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 DT +TNLEAA+ IARQLRLR+L G+++VDFIDM +++ V + + L +DR + Sbjct: 63 DTIFKTNLEAAQAIARQLRLRNLGGIVIVDFIDMVREEHQGEVLSEFRRQLARDRVKTMA 122 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 G S GL+EM+R+R R S+ + C C G G +++ S+ +LR + Q+ Sbjct: 123 GGFSQLGLVEMTRKRTRESLAHMLCEPCAACSGKGNVKTARSICYEVLREILREARQFNP 182 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 H V VV L+++ + G I++ +A + + I Sbjct: 183 HEFRVVASPKVVEMFLDEESQHLASLSDFIGKPISLQAETAMAQEQYDI 231 >gi|294791357|ref|ZP_06756514.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304] gi|294457828|gb|EFG26182.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304] Length = 941 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 121/424 (28%), Positives = 215/424 (50%), Gaps = 13/424 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 L+ + +V +D + I + + V I + S+ +A D+ Sbjct: 431 DRLMVVRERGRHSQVSVIEDNVLVEHYISDIEEVSSVGNIYQGRVQNVLPSMEAAFVDIG 490 Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V G D + + ++ + +LVQ+ K+ G+KGA +T +++AG Sbjct: 491 QYRNGVLYAGEVNWDTTRLEGQPRLVEHAFRPGDNVLVQVTKDPIGHKGARLTAQITVAG 550 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 RY VL+P + P + + P MGVI+RTA ++ I+ D Sbjct: 551 RYLVLVPAGGITGVSRKL---PERERTRLKNIVSKIAPDNMGVIIRTAADGASEEAIQHD 607 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E+L++ W+NV + +S PHL+ E +++ R IRD++ D +++V G+ Y Sbjct: 608 LEHLVKKWENVEKKLKEYQSSKRPHLLQGEPDVVIRVIRDIFNDDFKKLVVEGDSVYNRI 667 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 K++++ P + +++ F + I+ QL + +V LPS G +I+++TE Sbjct: 668 KEYLEEAAPDMLDRLEKWDPEEHEGKDVFDKWSIDSQLRKGMERKVYLPSGGSLIVDRTE 727 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E T + NLEAAEEI RQLRLRD+ G+I++DF+DM +N Sbjct: 728 AMTTIDVNTGRFIGKGQSLEATVTKCNLEAAEEIVRQLRLRDIGGMIMIDFVDMVMPQNR 787 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C C G G+I Sbjct: 788 DLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCAGRGFILHT 847 Query: 497 SSVA 500 Sbjct: 848 EPTV 851 Score = 87.3 bits (214), Expect = 7e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 +V V+ DN + E + GNIY +V V PS++AAFVD G R+G L E++ Sbjct: 444 QVSVIEDNVLVEHYISDIEEVSSVGNIYQGRVQNVLPSMEAAFVDIGQYRNGVLYAGEVN 503 Query: 76 PD 77 D Sbjct: 504 WD 505 >gi|326773628|ref|ZP_08232911.1| ribonuclease [Actinomyces viscosus C505] gi|326636858|gb|EGE37761.1| ribonuclease [Actinomyces viscosus C505] Length = 1090 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 135/582 (23%), Positives = 235/582 (40%), Gaps = 22/582 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D R I++ + + +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 500 GEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 559 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + + K VP GVI+RTA T+ ++ D E L+ W+ Sbjct: 560 TMTG-ISRKLPDTERSRLKK--ILKRIVPDSAGVIVRTAAEGATQEQLTADVERLVAQWE 616 Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + + AP L+ E L R IRD++ +D ++IVSG+ + ++ + Sbjct: 617 AIDKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLIVSGDNTWSTVSQYIDEV 676 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P + + + P +F ++ QL +V LPS G ++I++TEA+ IDVN+GR Sbjct: 677 SPDLSERLEHWVGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR 736 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L Sbjct: 737 FTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 796 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 +DR R QV +++ GL++M+R+R+ ++E+ + C +CKG G+I V + Sbjct: 797 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFIVHDEPVENQQVDMS 856 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY------------EARFGVSINVVIG 555 + + + E +A G + Sbjct: 857 ASASRGGGRSRGRKNREEQAAGGGKKETKQDSQETKGSKSPKGSGRGKASAGRDVAASPE 916 Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLED 614 D+ +G+ Q Q + V EA + + + Sbjct: 917 PGADDEARAAVRGALAQIAAAAEQAHKDSQQEGQESHEDQGAVEAPEAGVSDTADAAAQT 976 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 ++ ++ + + R + D Sbjct: 977 AENGQPADGQDASDVPVEDKPVKSRSRKAADKKPAKKSSEKKGDKADKKSGRKTGKKADK 1036 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 S P P + ++ + Sbjct: 1037 KAAATSEDPAEPQPGEAPSEPAEDKPARRTRRRATAKSAAPS 1078 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ VL D + E + + GN+Y+ +V V PS++AAFVD G R+ L E++ Sbjct: 444 QIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 503 Query: 76 PD 77 D Sbjct: 504 WD 505 >gi|260906318|ref|ZP_05914640.1| putative ribonuclease [Brevibacterium linens BL2] Length = 1076 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 126/566 (22%), Positives = 229/566 (40%), Gaps = 27/566 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ + +LVQ+ K+ G+KGA +T+ +SL GR+ V +P Sbjct: 505 GEVNWDALGMDGKARRIEVALSPGDAVLVQVTKDPIGHKGARLTSQISLPGRFLVYVPGN 564 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K V GVI+RTA + E+ D E L + W+ Sbjct: 565 SMTG-ISRKLPDVERNRLKK--LLKELVGDSNGVIVRTAAEGASDKELSTDVERLAKRWE 621 Query: 274 NVRELALNSVA--PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 + + + ++ P L+Y E ++I R IRD++ +D S +++ G+ + ++++ + P Sbjct: 622 TIEKKSKSTKVLAPQLLYSEPDMIVRIIRDVFNEDFSSLVIDGDGAWNTIHEYVEAVAPD 681 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 V +Y + IF +E Q+ Q V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 682 LLDRVHRYSEDEDIFDHYRVEEQVQKALQRTVNLPSGGSLVIDRTEAMTVIDVNTGKFTG 741 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEE+ RQ+RLRD+ G+IVVDFIDM + N V ++L E L +D Sbjct: 742 SGGNLEETVTRNNLEAAEEVIRQVRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRD 801 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS-------- 502 R + QV +++ GL++M+R+RI + + ES G G + S S Sbjct: 802 RTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGADLSGRGLLLPGSEEDGSKAHHGNRS 861 Query: 503 ------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 R + + + + + R+ + Sbjct: 862 SNNDGGNSRRDRKRRGDNKSSSKSNDSDGQSDTVANDASRSAVAAIAKATLKKDEAESKE 921 Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 + + + + A ++ + + S + + +++S + Sbjct: 922 PGSSQDASVSDNASSSANTDSSKDSQGNEPSDSAGNGGSGRSRTRSNRRRSQAKSADSSD 981 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN-------VIDDSFDMYME 669 + + + + + E Sbjct: 982 SAQDQSAQDTTVDETPAPEQPAQEQPAQAKPARAKKPEVPAAELPLMIGADSATKVAKAE 1041 Query: 670 PSDITNHNLLENGAHGFTENYDVSIP 695 P + +E S+P Sbjct: 1042 PVKAAPRRKPAAKSEAKSETAQPSLP 1067 Score = 91.6 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDF-ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ML+ S E+T++VV+ D E E+ + + GN+YL KV V PS++AAF+D G Sbjct: 438 MLVRES-GEQTQLVVVEDGITVEHYLKENRQQSSLIGNVYLGKVQNVLPSMEAAFIDIGK 496 Query: 64 NRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 497 GRNAVLYAGEVNWD 510 >gi|229817136|ref|ZP_04447418.1| hypothetical protein BIFANG_02394 [Bifidobacterium angulatum DSM 20098] gi|229784925|gb|EEP21039.1| hypothetical protein BIFANG_02394 [Bifidobacterium angulatum DSM 20098] Length = 479 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 194/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 67 GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 126 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA ++ I +D E L+R W+ Sbjct: 127 GMTGVSRKL---SERERSRLKNIVSKVAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWE 183 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ D +++IV G+K Y ++++ + P Sbjct: 184 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFTKLIVEGDKVYERIEEYLDTMAP 243 Query: 331 SYA----RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + + +F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 244 DLKTKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 303 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR R +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N V ++L E Sbjct: 304 GRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 363 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 364 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDKPTV 418 Score = 98.5 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 10 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 69 Query: 75 HPD 77 + D Sbjct: 70 NWD 72 >gi|149183736|ref|ZP_01862144.1| cytosolic axial filament protein [Bacillus sp. SG-1] gi|148848557|gb|EDL62799.1| cytosolic axial filament protein [Bacillus sp. SG-1] Length = 494 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 101/407 (24%), Positives = 199/407 (48%), Gaps = 4/407 (0%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 +K ++ I ++ Q L+VQ+ K+ G KG VT + + G V +P+ + +S+ Sbjct: 89 EKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGIIEMKGTSLVYLPH-GRYTAVSK 147 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 K ++ +K + ++ G++ RTA + + EI+ ++ L + + + +L+ Sbjct: 148 KASSEEQKKKWRRFGSRIKEE-EEGIVFRTAALGKAEKEIQNEYLGLKKQYQELYSSSLS 206 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 AP L++ + + + + ++ +EII E ++F+ S + ++ Sbjct: 207 KKAPFLLHRQDVMKEDILEEIKKVKQAEIITDDYSWKNEFQEFLHNNKASLGGEITHFQS 266 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF +E Q++ + V L + ++I TEAL IDVN+G+ T + + T L+ Sbjct: 267 HENIFVHYRVETQIEKAMKKVVWLDNGATIVIEPTEALTVIDVNTGKFTGKSDLSQTVLK 326 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TN AA+EIARQL++R+L+G+I++DFI+M+ +++ V LKE LK+D R + + Sbjct: 327 TNELAAKEIARQLKIRNLSGIILIDFIEMKSEQHQTEVVNALKEGLKEDGKRTTIVGFTE 386 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 G+L+++R++ + +LE + C C G G + S S+A + R + E +I+ Sbjct: 387 LGILQLTRKKTKPPLLEYISCRCPICSGYGMVESAESMAYKLERELYELYPADEDK-VII 445 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 DV + + E E I + + + I++ Sbjct: 446 EATEDVQKVFKGESSQYLKEMEKSINKKIEFQP-VSQSHPFYRIKRL 491 Score = 83.9 bits (205), Expect = 8e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+++++A E R LRD +E K+ I GNIY+ +V +VE L AAF++ G Sbjct: 11 NRIIVNA-LGREKRWARLRDGIMESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINIG 69 Query: 63 GNRHGFLPFLEI 74 ++GFL ++ Sbjct: 70 EGKNGFLHIEDL 81 >gi|227875309|ref|ZP_03993451.1| ribonuclease G [Mobiluncus mulieris ATCC 35243] gi|306818571|ref|ZP_07452294.1| ribonuclease G [Mobiluncus mulieris ATCC 35239] gi|227844214|gb|EEJ54381.1| ribonuclease G [Mobiluncus mulieris ATCC 35243] gi|304648744|gb|EFM46046.1| ribonuclease G [Mobiluncus mulieris ATCC 35239] Length = 817 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 120/345 (34%), Positives = 202/345 (58%), Gaps = 5/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+E + ++LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 299 GEVNWDAAGLNSKTGRIEEALSPGDMVLVQVTKDPIGHKGARLTSQITLAGRHLVLVPSG 358 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ ++ + +PAG GVI+RTA T+ +++ D E L+++W+ Sbjct: 359 AMTG-ISRKLPEEERKR--LKTVLKTMIPAGFGVIVRTAAEGATEEQLRVDVERLVKIWE 415 Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + +P L++ E L R +RD++ +DIS + + GE+ + ++K L P Sbjct: 416 DIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHTISKYVKELSPEL 475 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + +ED +F I+ QL + +V LPS GY+II++TEA+ IDVN+GR Sbjct: 476 GERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGA 535 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L +DR Sbjct: 536 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDR 595 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 R QV +++ GL++M+R+R+ ++E+ + C C G G+I Sbjct: 596 TRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 640 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 +V +L D + E + + GN+YL KV V S++AAFVD G R+ L E++ Sbjct: 243 QVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 302 Query: 76 PD 77 D Sbjct: 303 WD 304 >gi|54023319|ref|YP_117561.1| hypothetical protein nfa13520 [Nocardia farcinica IFM 10152] gi|54014827|dbj|BAD56197.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 1145 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 126/347 (36%), Positives = 208/347 (59%), Gaps = 7/347 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + ++ I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 468 GEVNWEAAGLGGKERKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPG- 526 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ LKEI R + P GVI+RTA ++ E+ RD E L W Sbjct: 527 GTSTGISRKLPDTERKR-LKEILREIVPP-DAGVIIRTASEGVSEAELARDVERLQSTWR 584 Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 +++E A AP +YEE +L+ + IRDL+ +D S++++ GE+ + +++++ + P Sbjct: 585 SIQEQADKDGGAPKTLYEEPDLLVKVIRDLFNEDFSQLVIEGERAWTTVQNYIRTVAPDL 644 Query: 333 -ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 AR+ R + +F I+ QL +V LPS G ++I++TEA+ IDVN+G+ T Sbjct: 645 LARVSRHENNGVDVFETYRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG 704 Query: 392 --EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E+L + Sbjct: 705 SGGSNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGR 764 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 DR R QV +++ GL++M+R+++ + ++E+ + C +C G G I Sbjct: 765 DRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHN 811 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 38/67 (56%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 H T+V VL DN + E + + GN+YL KV V PS++AAFVD G R+G L Sbjct: 407 HPNITQVAVLEDNILVEHFVTDTGQPSMVGNVYLGKVQNVLPSMEAAFVDIGRGRNGVLY 466 Query: 71 FLEIHPD 77 E++ + Sbjct: 467 AGEVNWE 473 >gi|260578302|ref|ZP_05846218.1| ribonuclease E [Corynebacterium jeikeium ATCC 43734] gi|258603604|gb|EEW16865.1| ribonuclease E [Corynebacterium jeikeium ATCC 43734] Length = 1027 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 142/580 (24%), Positives = 240/580 (41%), Gaps = 36/580 (6%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G P + I + ++ +LVQ++K+ G+KGA +T +S AGRY V P Sbjct: 421 GEMDWRSPHLHSKSRKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYLVYFP-A 479 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ ++ LK+I + G G I+RTA + T+ +I D + L + W Sbjct: 480 GTTAGISRKLPAGERKR-LKDILGEVITGDG-GAIIRTAAENATEEQITEDVQRLEKRWQ 537 Query: 274 NVR-----ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326 ++ E P +YEE N++ + +RD++ D SE+I+ G+K ++ +D++ Sbjct: 538 EIQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDYLGRT 597 Query: 327 --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 LM + R D F ++ QL+ +V LPS GY+II+ TEA+ IDV Sbjct: 598 SPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMTVIDV 657 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G +E T + NLEAAEEI RQLRLRD+ G+IVVDFIDM ++N V ++L Sbjct: 658 NTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLVLRRL 717 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E L +DR R ++G +++ GL++++R+R+ + +LE+ + C C G G+I V Sbjct: 718 SEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFIMHPDPVEQKD 777 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 ++ + + L + + + Sbjct: 778 PEPRRDHGHRKERQQAKNQGKNQSKGQLKERGQG---------------KAPERSQREDK 822 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKN-------IECVWQDEALLPIPKSESLEDIQ 616 +E+ + T + + + P PK E + Sbjct: 823 QVERTPQTEQTEQTQRPQSPQGTRRRVRRVVRRGTPLAAQGSERQEEQPEPKQEQSQKRG 882 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI-QNVIDDSFDMYMEPSDITN 675 N + I R+R D + + QN + + + Sbjct: 883 GNAKARNRASDIEGIVASARKRSAQEDPDEPSAADNAERPEQNKVAANRVRRRRRVVRSA 942 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 H + + S S+ E P K+ Sbjct: 943 HTNARSARSSSGRDAHSSAANQSSYEEAKRKFEESPRRKR 982 Score = 79.6 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 T+V V+ D ++ E + + GN+YL +V V S++AAFVD G R+ L E Sbjct: 363 MTQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGE 422 Query: 74 I 74 + Sbjct: 423 M 423 >gi|289668275|ref|ZP_06489350.1| ribonuclease G [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 427 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 113/319 (35%), Positives = 185/319 (57%), Gaps = 2/319 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++ Q ++VQ+VK+ G KGA +TT +S+ RY VL+P SK +S +I + +R LK Sbjct: 106 RDGQDIVVQVVKDPIGTKGARLTTQISIPSRYLVLLP-QSKVVGVSARIEDEAERLRLKT 164 Query: 235 IARGLEVPAG-MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + G G I+RT + + D YL R+W+ V + ++YE+ + Sbjct: 165 IVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLS 224 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L RA+RDL +D+ ++ V + + + + F+ MP A + Y PIF G+E Sbjct: 225 LPLRAVRDLIRRDVEKVKVDSNETFVQLEAFVAKYMPVLAERLELYTGDRPIFDLYGVED 284 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ +V L S GY++I+QTEA+ +IDVN+G + +E+T +TNLEAA+ +ARQ Sbjct: 285 EIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQ 344 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L G+I++DFIDM++ ++ R V + L+++L +D A+ V S GL+EM+R+R Sbjct: 345 LRLRNLGGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTV 404 Query: 474 SSVLESTTKVCTYCKGAGY 492 S+ ++ C C G G Sbjct: 405 ESLERQLSETCGQCGGRGT 423 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV V+ + ++EL E ++ + GNIY KV RV P +QAAFV+ Sbjct: 1 MSEEILVNVT-PRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G R FL ++ Sbjct: 60 VGLERAAFLHANDV 73 >gi|229543690|ref|ZP_04432750.1| ribonuclease, Rne/Rng family [Bacillus coagulans 36D1] gi|229328110|gb|EEN93785.1| ribonuclease, Rne/Rng family [Bacillus coagulans 36D1] Length = 492 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 115/490 (23%), Positives = 205/490 (41%), Gaps = 13/490 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR ++ + + AV ++ + I +V I + I +A D Sbjct: 2 DRSIII--NVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFID 59 Query: 145 VVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 + S K I + Q ++VQ+ K+E G KG +T + L+ Sbjct: 60 IGGIRHGYLHISRLPAFANSKNSNPTISAYLSPGQTVMVQVKKDETGQKGPLLTGIIELS 119 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 G V +P K +S+K + + + + LE G+I+RTA + Sbjct: 120 GEQIVYLP-EGKYTAVSKKADDADRNRWRNRVRKALEPQ--EGIIVRTAAIHAGGDGWRD 176 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 + + L + + E A AP +++E+ + R+L S ++ + Sbjct: 177 ELKCLRLRYKCLLEKAAQLKAPAVLHEKSTVEAEIFRELVRL-KSGTVIVDDAEALARLK 235 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + P Y IF R I+ L+ + V L + Y++I++TEAL ID Sbjct: 236 ALLAGRPELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEALTIID 295 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 VN+G+ T +T L+TNL AA+EI RQL+LRD G+I+VDFIDM+ + V L Sbjct: 296 VNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQVRAVL 355 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 ++ L+ D + ++ + G+L+M+R++ R S+ E+ VC C G+G I S ++A + Sbjct: 356 EKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPETLAFRL 415 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN--VVIGIELADK 561 R + E +++ DV + + E G+ + + Sbjct: 416 ERELWEAPYA-DYEAVLIECTQDVKDCFCGETDVHLKRLENLLGMKLIFHITRDPH---P 471 Query: 562 LFYIEKGSPV 571 + I + Sbjct: 472 FYAIRQFGTA 481 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++I+ E R V+ + +V + GNIYL KV V+P + AAF+D Sbjct: 1 MDRSIIINVKT-REKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFID 59 Query: 61 YGGNRHGFLPFL 72 GG RHG+L Sbjct: 60 IGGIRHGYLHIS 71 >gi|284928630|ref|YP_003421152.1| ribonuclease, Rne/Rng family [cyanobacterium UCYN-A] gi|284809089|gb|ADB94794.1| ribonuclease, Rne/Rng family [cyanobacterium UCYN-A] Length = 654 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 218/466 (46%), Gaps = 16/466 (3%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I +++ +Q +LVQ++KE GNKG +T +SL GR+ VLMPN KG +SR+I N +R Sbjct: 82 IIDLLTPQQKVLVQVMKEPTGNKGPRLTGNVSLPGRFLVLMPN-GKGVNLSRRIGNDNER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E+L + W+ V+ A + AP L+ Sbjct: 141 SRLRA-LAILIKPAGMGLLVRTEAEDQAEEAIMEDLEFLQKQWETVQIQATATRAPSLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346 + + I+R +RD+Y D++ I+V G + K + + Sbjct: 200 RDDDFIQRVLRDIYSADVNRIVVDSTSGVKRVKHHLMNWSGGRPPEGVLIDHHQESMPIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL +DVNSG TR +T L TN EA Sbjct: 260 DYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVVDVNSGSFTRSATSRETVLWTNSEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++ G+I+VDFIDM+ +++ + + ++LK+D+AR Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKALKEDKARPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 ++R+R +V E + C+ C G G++ S + + + ++ + + Sbjct: 380 LTRKRQGKNVYELFGQPCSNCGGLGHLAFLPGESQLVPLELASSSIPQAFSNKSSESSSE 439 Query: 525 SDVVLYLLNQKRATIVEY-----EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 + + + + + N I +A + Sbjct: 440 QTWESSFEEDNSSELELLFHPSYQEQNNTATNSRRRRRRQSPNLVI----KEEAPTKIAN 495 Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + ++ +E + + + +E + + S E Sbjct: 496 NLSNKEIEDDNEQIVESRRERLPRHLVREESPIEKVSVEMTSLEQD 541 Score = 72.7 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I H V +++++EL Q +I+L V V P + AAFV+ Sbjct: 1 MPKQIIITEQHHI---AAVFWEDQIQELVV--ATGNQQVSDIFLGVVENVIPGIDAAFVN 55 Query: 61 YG-GNRHGFLPFLEIHP 76 G R+GF+ ++ P Sbjct: 56 IGDAERNGFIHVTDLGP 72 >gi|68535628|ref|YP_250333.1| ribonuclease E [Corynebacterium jeikeium K411] gi|68263227|emb|CAI36715.1| ribonuclease E [Corynebacterium jeikeium K411] Length = 1013 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 143/580 (24%), Positives = 241/580 (41%), Gaps = 36/580 (6%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G P + I + ++ +LVQ++K+ G+KGA +T +S AGRY V P Sbjct: 407 GEMDWRSPHLHSKSRKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYLVYFP-A 465 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ ++ LK+I + G G I+RTA + T+ +I D + L + W Sbjct: 466 GTTAGISRKLPAGERKR-LKDILGEVITGDG-GAIIRTAAENATEEQITEDVQRLEKRWQ 523 Query: 274 NVR-----ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-- 326 ++ E P +YEE N++ + +RD++ D SE+I+ G+K ++ +D++ Sbjct: 524 EIQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDYLGRT 583 Query: 327 --LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 LM + R D F ++ QL+ +V LPS GY+II+ TEA+ IDV Sbjct: 584 SPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMTVIDV 643 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G +E T + NLEAAEEI RQLRLRD+ G+IVVDFIDM ++N V ++L Sbjct: 644 NTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLVLRRL 703 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E L +DR R ++G +++ GL++++R+R+ + +LE+ + C C G G+I V Sbjct: 704 SEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFIMHPDPVEQKD 763 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 ++ + + L + + + Sbjct: 764 PEPRRDHGHRKERQQAKNQGKNQSKGQLKERGQG---------------KAPERSQREDK 808 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKN-------IECVWQDEALLPIPKSESLEDIQ 616 +E+ V+ T + + + P PK E + Sbjct: 809 QVERTPQVEQTEQTQRPQSPQGTRRRVRRVVRRGTPLAAQGSERQEEQPEPKQEQSQKRG 868 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI-QNVIDDSFDMYMEPSDITN 675 N + I R+R D + + QN + + + Sbjct: 869 GNAKARNRASDIEGIVASARKRSAQEDPDEPSAADNAERPEQNKVAANRVRRRRRVVRSA 928 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 H + + S S+ E P K+ Sbjct: 929 HTNARSARSSSGRDAHSSAANRSSYEEAKRKFEESPRRKR 968 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 T+V V+ D ++ E + + GN+YL +V V S++AAFVD G R+ L E Sbjct: 349 MTQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGE 408 Query: 74 I 74 + Sbjct: 409 M 409 >gi|227495878|ref|ZP_03926189.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226834555|gb|EEH66938.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 1047 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 118/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ +K+ +LVQ+ K+ G+KGA +T+ ++LAGRY VL+P Sbjct: 607 GEVNWDAAGMEGKPRRIEDALKSGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGG 666 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ + ++ + VP GVI+RTA ++ +++ D E L W Sbjct: 667 TMTG-ISRKLPDTE--RHRLKGILKRIVPDDAGVIVRTAAEGASEEQLRADVERLATQWA 723 Query: 274 NVRELALN-----SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + + AP L+ E L R +RD++ +D ++IV G ++ +++ L Sbjct: 724 AIDKKSKQILSGSGRAPVLLKGEPELAVRVVRDVFNEDFRKLIVQGPDAWKTISEYVTEL 783 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P A + + P +F I+ QL +V LPS G +II++TEA+ IDVN+GR Sbjct: 784 SPDLADRLEHWVSPEDVFSAHRIDEQLAKGFDRKVWLPSGGTLIIDRTEAMTVIDVNTGR 843 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + N+EAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L Sbjct: 844 FTGAGGTLEETVTRNNIEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECL 903 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R+R+ ++E+ + C C G G+I + V Sbjct: 904 GRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTPCECCGGRGFIVHDNPVENQ 958 Score = 88.5 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 ++ +L D + E + + GN+Y+ +V V PS++AAFVD G R+ L E++ Sbjct: 551 QIAILEDGMLVEHYVARHTQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVN 610 Query: 76 PD 77 D Sbjct: 611 WD 612 >gi|256371567|ref|YP_003109391.1| ribonuclease, Rne/Rng family [Acidimicrobium ferrooxidans DSM 10331] gi|256008151|gb|ACU53718.1| ribonuclease, Rne/Rng family [Acidimicrobium ferrooxidans DSM 10331] Length = 457 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 117/336 (34%), Positives = 190/336 (56%), Gaps = 6/336 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I+++++ +Q+++ Q VK +KGA +T +SL GR++VL+P + IS+++ + R Sbjct: 125 IEQLLRPKQVIVCQAVKNPIAHKGARLTQEVSLPGRFAVLVPGQ-RSVGISKRLPDQERR 183 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + VP G GVILRTA T+ E++RD L+ +W + ELA AP L+Y Sbjct: 184 R--LRGLVEDLVPEGFGVILRTAAEGATRAELERDITQLVGMWQRIDELARTEHAPALLY 241 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH---PIF 346 +E R IR+ + ++ + + Y + +++ + P A V Y+ PIF Sbjct: 242 QEPPAAVRVIREEFSQEFRSVAIDDRALYEDVARYVQTISPELADRVEYYDAEAEGVPIF 301 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 R ++ QL + V LPS G ++I++ EAL IDVN+ R+ +E+T + NLEA Sbjct: 302 QRYHVQHQLAKALERTVWLPSGGSLVIDRAEALTVIDVNTARNVGAVSLEETIHRNNLEA 361 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 EEIARQLRLRD+ G+IV+D +DM + +N V + + +L +D+ R V +S GL++ Sbjct: 362 VEEIARQLRLRDIGGIIVIDVVDMVDPQNRDDVMRAFRAALARDKTRTHVYDMSPLGLIQ 421 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 M+RQRI ++ES + C C G GY+ + VA Sbjct: 422 MTRQRISEGLVESLSSTCPTCHGQGYVLDEDVVASR 457 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 11 HVEETRVVVLRDNRVEELDFESEH--KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 H + T V +L + + + + GNIYL +V V P ++AAF+D G ++ Sbjct: 44 HGDVTHVAILEGRSLIQHAVSRASDTETSVVGNIYLGRVVNVLPGMEAAFIDIGTAKNAV 103 Query: 69 LPFLEI 74 L ++ Sbjct: 104 LYRGDV 109 >gi|262341298|ref|YP_003284153.1| ribonuclease G [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272635|gb|ACY40543.1| ribonuclease G [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 510 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 120/574 (20%), Positives = 213/574 (37%), Gaps = 86/574 (14%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I+A +E + +L + ++ EL + +KK G+IYL V ++ L AA +D Sbjct: 1 MNKELIINA-EEQEVEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + ++ +QI +L+ ++ + + + + H Sbjct: 60 IGHSKGAFLHYNDLG---FQI-----NKILELISMNRKFFSNNFEKKENRNSIDKILHPG 111 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + + + G +Y I + + Sbjct: 112 QRILVQISKE-------------------PISNKGPKLTSKICIPGRYLILIPFSEKISI 152 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +I + ++ + + E Sbjct: 153 SKKIKNAKEESR------------------------------------LLSYIRKIKPHE 176 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 + E+ + + N+ +L P V E + +R Sbjct: 177 FGIIIRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLP---PPPVRVLSEISKTSCLLR 233 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + D I + +E ++ L+ P I++ Y+ PIF + GIE Q+ Sbjct: 234 DTFNDDFKSIYCNNNFLCQEIHSYLSLIAPEKINIIKYYKGNIPIFEKYGIEKQIQIFLG 293 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI------EDTALQTNLEAAEEIARQL 414 V L + Y+II TEAL IDVNSG + D L+ NL AA EIARQL Sbjct: 294 RNVPLENGAYLIIEHTEALHVIDVNSGMNNHMKKNCTESERIDNILKINLLAATEIARQL 353 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLRD+ G+IVVDFIDM E + + + LKE +K DRA+ ++ + FGL++ +R R+R Sbjct: 354 RLRDMGGIIVVDFIDMSEPIQRKQLYEHLKEKMKNDRAKHKILPPNKFGLVQFTRHRVRP 413 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSV---EEYLLQYTAHNIIVHTHSDVVLYL 531 + + +S+ S I R E + I +H HS V YL Sbjct: 414 ELKVNINNE----------KSKDSPIHYIHRLEFVLESIIKNKNHQKIQLHIHSFVSAYL 463 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + ++ ++ I ++ + I Sbjct: 464 KKGFPSIQQKWLLKYKKWIQIIPRDSFGYTEYKI 497 >gi|300788544|ref|YP_003768835.1| ribonuclease [Amycolatopsis mediterranei U32] gi|299798058|gb|ADJ48433.1| ribonuclease [Amycolatopsis mediterranei U32] Length = 980 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 138/565 (24%), Positives = 239/565 (42%), Gaps = 43/565 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I++ + +LVQ+ K+ G+KGA +TT +SL GR+ V +P Sbjct: 426 GEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAG 485 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ R+ + VP GVI+RTA + E+ RD + L WD Sbjct: 486 G-ATGISRKLPENERRR--LKDILKRIVPEDAGVIIRTASEGIGEEELGRDVDRLKAQWD 542 Query: 274 NVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++E A AP ++YEE +L+ + +RDL+ +D +++ + G + + ++ + Sbjct: 543 VIKEKAAAGSGKKGGAPTMLYEEPDLLVKVVRDLFTEDFTKLEIQGNRSWETINGYVSHV 602 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P +R+Y F I+ Q+ +V LPS GY++I++TEA+ IDVN+G+ Sbjct: 603 APELTERLRRYTGTGDAFADHRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E+T + NLE+AEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L Sbjct: 663 FTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSV 507 +DR R QV +++ GL++M+R++I + +LE+ + C +CKG G + S + R+ Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPCEHCKGRGVLVSTE-----VQRTA 777 Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 + + R + + Sbjct: 778 GNATQSPGGNGNGGGNNGGNSGGGEKSSRRS----------------------------R 809 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G + + E + + + S + + + G Sbjct: 810 GRGKSEEAAKEAAAEAAKAEVHAVPSPEQRESIASAVAAMANASKAAKEHDHGALNGNGP 869 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R PAT D V+ + + + +D E + Sbjct: 870 AP-EPAREIADVPATTEADETPVAAEPPAEPAQEVAGIPVTTEADEVPVPQDEEPEVEQS 928 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPI 712 + + PV+ P + + +P Sbjct: 929 SAPEPAEEPVTEPVADPEVNVPEPA 953 Score = 98.1 bits (242), Expect = 4e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 + A H + T++ VL D + E I GN+YL +V V PS++AAF+D G R+ Sbjct: 361 VVAEHGDSTQIAVLEDGVLVEHFVTQSGSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRN 420 Query: 67 GFLPFLEIHPD 77 L E+ D Sbjct: 421 AVLYAGEVDWD 431 >gi|319440897|ref|ZP_07990053.1| ribonuclease E [Corynebacterium variabile DSM 44702] Length = 1295 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 137/570 (24%), Positives = 233/570 (40%), Gaps = 30/570 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I+ +K +LVQ +K+ G+KGA +T LS AGRY V +P Sbjct: 555 GEVDWRNKHLHTRTRRIEAALKPGDQVLVQAIKDPLGHKGARLTNRLSFAGRYLVYVPG- 613 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 K + ISRK+ ++ + G VP G I+RTA ++ I D L + W Sbjct: 614 GKTQGISRKLPESERKR--LKDILGRVVPDNGGTIIRTAAEGVSEELIAEDVNRLHQRWL 671 Query: 274 NVRE-----LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++++ A P +YEE N++ + IRD++ +D +E++V GEK + +D++ + Sbjct: 672 DIQDAEEKARARKGSHPVTMYEEPNMLVKVIRDIFNEDFNELVVDGEKSWAVVRDYVHRI 731 Query: 329 MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P V +Y +F ++ QL +V LPS GY+II++TEA+ IDV Sbjct: 732 APDLESRVVRYHPEQHGGRDVFEDRQLDEQLAKALSRKVWLPSGGYLIIDRTEAMTVIDV 791 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G +E+T NLEAAEEI RQ+RLRD+ G+IVVDFIDM +N + ++L Sbjct: 792 NTGSFVGSGGNLEETVTLNNLEAAEEIVRQMRLRDMGGMIVVDFIDMVLPENRDLMLRRL 851 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E L +DR R +V +++ GL++M+R+R+ + +LE+ + C C+G G I + Sbjct: 852 SEFLGRDRTRHKVSEVTSLGLVQMTRKRLGTGLLETFSTECPTCEGRGVIIHDDP----V 907 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 EE + + + +R E Sbjct: 908 EHVEEEDGHHHERRDHGRRSEKRQARDQQETRRRHEKNRE-----------DATSDHPEK 956 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +K +P + K + ++ + + + +E + + Sbjct: 957 IGQKEAPA--KESQDAKEVKEDKSEVEQQRRSRRTRRGSRAGGQVAEKAPEKAQEQSRPK 1014 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + + + A +H + + V + EP + Sbjct: 1015 TESTVEPKAEFKAESEAAPEHSGESQGARRGRRRVVRSNETGHQDEPRRDHSSARDARDD 1074 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 E DP Sbjct: 1075 RRSHGAGSAGDVAAIAAEAVQHAGIEDPDE 1104 Score = 81.6 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 9 ASHVEET-RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHG 67 + H T +V + D + E SE + I GNIYL +V V S++AAFVD G R+ Sbjct: 491 SDHPGMTTQVGITEDGMLVEHFVTSETQSSIIGNIYLGRVQNVLSSMEAAFVDIGTGRNA 550 Query: 68 FLPFLEI 74 L E+ Sbjct: 551 VLYAGEV 557 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 3/155 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G+P + K + + A K ED + + E Sbjct: 55 GAPAETAKKAPAKRTRKAAPKKSAATKSTAKKAPATKTATKDVPAEDAPVDATAAEKNTD 114 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++ PA + A T Sbjct: 115 APAETAKK---APAKRTRKTTAKKAAPKKDESQQPEATTAEPKKSRARKAPAKKTATTQT 171 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 TPE+ ++ K T RR Sbjct: 172 AAKKEEPTTPETPEVAEPSAEEKSTTKTTSRRPRR 206 >gi|294501399|ref|YP_003565099.1| ribonuclease, Rne/Rng family [Bacillus megaterium QM B1551] gi|294351336|gb|ADE71665.1| ribonuclease, Rne/Rng family [Bacillus megaterium QM B1551] Length = 489 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 103/433 (23%), Positives = 202/433 (46%), Gaps = 13/433 (3%) Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 + + S + K Q + I+ + +LVQ+VKE G KG +T + + V Sbjct: 69 IHRNELVSYQQSENPHKDQQPMSAFIREGEKVLVQVVKEGIGTKGPKLTGIIEFSSDELV 128 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 +P+ +S+KI P ++ + G + RTA A +++ ++ + L Sbjct: 129 YLPH-GNYVAVSKKIAEPKRQQW--KQLGERLKQGMEGFLFRTAIAEKSEAAVQHKIKEL 185 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + ++ + AP LV + + ++ ++ + I I+V Y+ L Sbjct: 186 QKKYERLERQTQGMKAPALVSKGQDFLETRVQAALQQGIDGIVVDDFDLYQHLHTTYSNL 245 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + Y+ IF +E Q++ L + V L S GY++I++TEA+ +DVN+G+ Sbjct: 246 S------IEYYKGNENIFSFYDLERQIEKLLKRIVWLKSGGYIVIDETEAMTVVDVNTGK 299 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 + + I T LQTN+EAA E+++Q++LR L G+I++DFI+M K++ VE+ +K+ + Sbjct: 300 FSGKDNIRKTMLQTNMEAAYELSKQMQLRHLGGMILIDFINMPHKEDRTEVERYMKKLCE 359 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 +D R + + G+L+++R+++R+S+ + T C C+G G + + A I R + Sbjct: 360 QDEVRTNIVGFTELGILQLTRKKVRNSIGSTLTMPCEVCEGTGKMIDSKTAAFQIERVIW 419 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 E+ I + T SDV+ + Q + E +I + + F + + Sbjct: 420 EHRGAEE-EAIWIETRSDVINEMKAQ--GFLNALEKMVKKTIYLTPSDDY-TNAFVLRQL 475 Query: 569 SPVQALVNTGHKV 581 + + Sbjct: 476 GSNEQIQKRVSAS 488 Score = 93.1 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 +I+A+ R+ V+ D +E++ E + + QI G+IY KV +V P +QAAF+D G + Sbjct: 7 IINAATSS-KRIAVINDKALEKIYLEEQSENQIIGDIYWGKVVKVLPHMQAAFIDIGLSM 65 Query: 66 HGFLPFLEIHPDYYQI---PFSDRQALLKESNIAQTDSEAVADD 106 +GF+ E+ YQ P D+Q + + V + Sbjct: 66 NGFIHRNELVS--YQQSENPHKDQQPMSAFIREGEKVLVQVVKE 107 >gi|295706747|ref|YP_003599822.1| ribonuclease, Rne/Rng family [Bacillus megaterium DSM 319] gi|294804406|gb|ADF41472.1| ribonuclease, Rne/Rng family [Bacillus megaterium DSM 319] Length = 489 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 103/433 (23%), Positives = 202/433 (46%), Gaps = 13/433 (3%) Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 + + S + K Q + I+ + +LVQ+VKE G KG +T + + V Sbjct: 69 IHRNELVSYQQSENPHKDQQPMSAFIREGEKVLVQVVKEGIGTKGPKLTGIIEFSSDELV 128 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 +P+ +S+KI P ++ + G + RTA A +++ ++ + L Sbjct: 129 YLPH-GNYVAVSKKIAEPKRQQW--KQLGERLKQGMEGFLFRTAIAEKSEAAVQHKIKEL 185 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + ++ + AP LV + + ++ ++ + I I+V Y+ + Sbjct: 186 QKKYERLERQTQGMKAPTLVSKGQDFLETRVQAALQQGIDGIVVDDFDLYQHLQTTYPNS 245 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + Y+ IF +E Q++ L + V L S GY++I++TEA+ +DVN+G+ Sbjct: 246 S------IEYYKGNENIFSFYDVERQIEKLLKRIVWLKSGGYIVIDETEAMTIVDVNTGK 299 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 + + I T LQTN+EAA E+++Q++LR L G+I++DFI+M K++ VE+ +K+ + Sbjct: 300 FSGKDNIRKTMLQTNMEAAYELSKQMQLRHLGGMILIDFINMPHKEDRTEVERYMKKLCE 359 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 +D R V + G+L+++R+++R+S+ + T C C+G G + + A I R + Sbjct: 360 QDEVRTNVVGFTELGILQLTRKKVRNSIGSTLTMPCEVCEGTGKVIDSKTAAFQIERVIW 419 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 E+ I + T SDV+ + Q + E +I + + F + + Sbjct: 420 EHRGAEE-EAIWIETRSDVINEIKAQ--GFLNALEKMAKKTIYLTPSDDY-TNAFVLRQL 475 Query: 569 SPVQALVNTGHKV 581 + + Sbjct: 476 GSNEQIQKRVSAS 488 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 +I+A+ R+ V+ D +E++ + + + QI G+IY KV +V P +QAAF+D G + Sbjct: 7 IINAATSS-KRIAVINDKALEKIYLQEQSENQIIGDIYWGKVVKVLPHMQAAFIDIGLSM 65 Query: 66 HGFLPFLEIHPDYYQI---PFSDRQALLKESNIAQTDSEAVADD 106 +GF+ E+ YQ P D+Q + + V + Sbjct: 66 NGFIHRNELVS--YQQSENPHKDQQPMSAFIREGEKVLVQVVKE 107 >gi|303241620|ref|ZP_07328119.1| ribonuclease, Rne/Rng family [Acetivibrio cellulolyticus CD2] gi|302590840|gb|EFL60589.1| ribonuclease, Rne/Rng family [Acetivibrio cellulolyticus CD2] Length = 403 Score = 203 bits (516), Expect = 7e-50, Method: Composition-based stats. Identities = 104/481 (21%), Positives = 203/481 (42%), Gaps = 79/481 (16%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++++D E RV +L D + E+ E +++ GNIY KV+ V P +QAAF+D Sbjct: 1 MVSEIIVDVGL-NEKRVALLEDKELVEVFIERNDSERLAGNIYRGKVSSVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + D E + +D+ ++ Sbjct: 60 IGYEKNAFLYVGDAVSQ----------------KEFSEDEEEMYNDMKSYNIEELLRPGQ 103 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 E + T+ + + RQ++ Sbjct: 104 EITVQVTKEPIGTKGP------------------------------RVTTHITLPGRQLV 133 Query: 181 LVQIVKEERGNKGAA-VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 L+ ++ + L + P I R ++ ++ K L Sbjct: 134 LLPNADYIGISRRIEDEEERVKLKKIAEKVKP--KNMGLIVRTVSEGKREEDFKNDINFL 191 Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 I ++ + I + + N++ RA+ Sbjct: 192 VKLWEK--IKKSEQSGPVPRCI---------------------------HRDLNIVYRAV 222 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 RD++ +I + I++ + Y + + +++ P+ V + ++ I+ + Sbjct: 223 RDMFTWNIDKFIINDRQEYNKVLELVEMSSPALKLRVECFNKNIDLYEHFQIDSMIAKAL 282 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 +V L GY+II +TEAL +DVN+G+ + +E+T L+TN++AA+EIA+QLRLRD+ Sbjct: 283 SKKVWLKCGGYLIIERTEALTVVDVNTGKYVGNNNLEETVLRTNIDAAKEIAKQLRLRDI 342 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 G+I++DFIDM E ++ + + + L+++LKKDR + V ++ GL+EM+R+++R+S+ Sbjct: 343 GGIIIIDFIDMHEPEHQKQIIETLRQALKKDRTKTTVVGMTGLGLIEMTRKKVRTSLYCI 402 Query: 480 T 480 Sbjct: 403 M 403 >gi|119717674|ref|YP_924639.1| ribonuclease G [Nocardioides sp. JS614] gi|119538335|gb|ABL82952.1| RNAse G [Nocardioides sp. JS614] Length = 1070 Score = 203 bits (516), Expect = 7e-50, Method: Composition-based stats. Identities = 120/343 (34%), Positives = 199/343 (58%), Gaps = 12/343 (3%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 K + I+ V+ + Q +LVQ+ K+ G+KGA +T+ +SLAGR+ V +P+ ISR Sbjct: 472 HKDGQPRKIESVLSSGQSVLVQVTKDPIGHKGARLTSQISLAGRFLVYVPD-GTTSGISR 530 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 K+ + + + VP GVI+RTA ++ E+ RD E L W+++ A Sbjct: 531 KLPDTERTR--LKALLKEIVPDSAGVIVRTAAEGASEEELTRDVERLKARWEDIEGKA-K 587 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 AP L+Y E +L + +RDL+ +D S++++ GE + + ++ + P + +Y+ Sbjct: 588 GSAPQLLYGEPDLTLKVVRDLFTEDFSKLVIQGEDAWDTVQGYVHHVAPDLEARLERYDP 647 Query: 342 -------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REH 393 +F I+ Q+ +V LPS G +II++TEA+ +DVN+G+ T Sbjct: 648 GADGAGGKADVFAEYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGG 707 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 +E+T + NLEAAEEI RQLRLRD+ G+IVVDFIDM + N V ++L E L +DR R Sbjct: 708 NLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTR 767 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 QV +++ GL++M+R+RI + +LE+ ++ C +C+G G + + Sbjct: 768 HQVAEVTSLGLVQMTRKRIGTGLLEAFSETCEHCQGRGVLVHE 810 Score = 91.6 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E E + + GN+YL +V V PS++AAF+D G R+ L E+ Sbjct: 406 TQIGVLEDRVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV 465 Query: 75 HP 76 + Sbjct: 466 NW 467 >gi|225850550|ref|YP_002730784.1| ribonuclease G [Persephonella marina EX-H1] gi|225645581|gb|ACO03767.1| ribonuclease G [Persephonella marina EX-H1] Length = 467 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 125/469 (26%), Positives = 217/469 (46%), Gaps = 25/469 (5%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 +D +V + +++ I + ++ +A D+ + E + Sbjct: 20 EDNEPVEVRVEYKDIIKQSGNIYKGKIKRLIPAMNAAFVDIGEDREAFLPIKDIEE---- 75 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + +K ++VQ+ + KGA +T ++L G+Y VLMP +IS KI Sbjct: 76 ------CKNLKVGSPVVVQVKRAPINTKGAKLTCKITLPGKYLVLMPTV-NTVSISSKIE 128 Query: 225 NPVDRKNLKEIARGLEVPA---GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 +P R L+E + + P G I+RT A+ ++ I DF L LW+N+ E + + Sbjct: 129 DPELRDRLREKIKDILKPFNEEDYGFIIRTVAATASEEAIIEDFLNLKHLWENIIERSKS 188 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 P L++EE + I +RD + K ++ Sbjct: 189 KRTPSLLFEENHKIFSILRDYAGDFSKITTDNLHILKEIKDYISKHFPDKNIKLEIYKNR 248 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 + ++ ++ + V L + GY++I +TEALV+IDVNSG + +E+TA Sbjct: 249 KVSPYTYYQVDKLINKILSPYVWLRNGGYIVIEETEALVAIDVNSGSHCKHKSLEETAYH 308 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TN+EAA EIARQLRLRDL G+IV+DFIDM+ ++ +++ + +KKD+ +++ ++ Sbjct: 309 TNVEAAREIARQLRLRDLGGIIVIDFIDMKSEERKKALIDFFRSEVKKDKRPIKIKEFTS 368 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH-NII 520 GLLE++R+++ S++ + +C YCKG GYI++ S V I +EE I Sbjct: 369 LGLLELTRKKMEESLINQLSDMCEYCKGKGYIKNVSLVIFEIENKLEELKPFVKIKIRIN 428 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + N+ I E I++ I L +YIE+ Sbjct: 429 PRLSESI-----NRFIKAINMEEQ-----IDIEYDINLPMDKYYIERVE 467 Score = 78.5 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%) Query: 1 MANKMLIDASHVEETR----VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56 M+ ++L+ +S R V+ DN E+ E + + GNIY K+ R+ P++ A Sbjct: 1 MSRELLVISS-----RHLYLYVIYEDNEPVEVRVEYKDIIKQSGNIYKGKIKRLIPAMNA 55 Query: 57 AFVDYGGNRHGFLPFLEI 74 AFVD G +R FLP +I Sbjct: 56 AFVDIGEDREAFLPIKDI 73 >gi|50842313|ref|YP_055540.1| putative ribonuclease [Propionibacterium acnes KPA171202] gi|282854195|ref|ZP_06263532.1| S1 RNA binding domain protein [Propionibacterium acnes J139] gi|50839915|gb|AAT82582.1| conserved protein, putative ribonuclease [Propionibacterium acnes KPA171202] gi|282583648|gb|EFB89028.1| S1 RNA binding domain protein [Propionibacterium acnes J139] Length = 874 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 497 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 555 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 556 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 613 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 614 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 673 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 674 PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 733 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 734 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 793 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 794 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 848 Score = 95.8 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 429 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 487 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 488 RGRNAVLYAGEVDWAKYGKEGEDK 511 >gi|291451299|ref|ZP_06590689.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354248|gb|EFE81150.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 982 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 6/336 (1%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 511 HGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 569 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL--NS 282 + + + VP GVI+RTA ++ E++RD E L W +++ A N+ Sbjct: 570 DTERAR--LKGILKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNA 627 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 +P L+Y E ++ R +RD++ +D S++IVSG++ ++ ++ + P ++++ Sbjct: 628 SSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSE 687 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ L +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 688 TDVFATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 747 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 748 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 807 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 808 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 843 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D+ + E E GN+YL KV V PS++AAF+D G Sbjct: 431 ERVMVVRQSGERTQIGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 490 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 491 KGRNAVLYAGEV 502 >gi|289426168|ref|ZP_06427914.1| S1 RNA binding domain protein [Propionibacterium acnes SK187] gi|289427160|ref|ZP_06428876.1| S1 RNA binding domain protein [Propionibacterium acnes J165] gi|295130397|ref|YP_003581060.1| ribonuclease, Rne/Rng family [Propionibacterium acnes SK137] gi|289153333|gb|EFD02048.1| S1 RNA binding domain protein [Propionibacterium acnes SK187] gi|289159629|gb|EFD07817.1| S1 RNA binding domain protein [Propionibacterium acnes J165] gi|291376539|gb|ADE00394.1| ribonuclease, Rne/Rng family [Propionibacterium acnes SK137] gi|332675236|gb|AEE72052.1| ribonuclease E [Propionibacterium acnes 266] Length = 874 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 497 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 555 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 556 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 613 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 614 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 673 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 674 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 733 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 734 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 793 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 794 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 848 Score = 95.8 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 429 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 487 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 488 RGRNAVLYAGEVDWAKYGKEGEDK 511 >gi|240170915|ref|ZP_04749574.1| ribonuclease E Rne [Mycobacterium kansasii ATCC 12478] Length = 966 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 117/359 (32%), Positives = 191/359 (53%), Gaps = 17/359 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 398 GEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 457 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W Sbjct: 458 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEGDIRADVTRLQERWQ 514 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A YEE +++ + IRDL+ +D + +IVSG++ + D++ + Sbjct: 515 QIEAKAAEVKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDEAWTTINDYVNSV 574 Query: 329 MPSYARIVRQYEDPH--------PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE +F I+ QL +V LPS G ++I++TEA+ Sbjct: 575 APDLVSKLTKYEPAELAEGQTRPDVFAVHRIDEQLTKAMDRKVWLPSGGTLVIDRTEAMT 634 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 635 VIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 694 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + Sbjct: 695 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSSSCPQCSGRGILLHADP 753 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 341 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 400 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 401 NWDAAGLGGADRK 413 >gi|220908778|ref|YP_002484089.1| Rne/Rng family ribonuclease [Cyanothece sp. PCC 7425] gi|219865389|gb|ACL45728.1| ribonuclease, Rne/Rng family [Cyanothece sp. PCC 7425] Length = 669 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 216/468 (46%), Gaps = 25/468 (5%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E++ +Q +L+Q++KE G+KG +T +S+ GRY VLMP +G +SR+I N +R Sbjct: 82 ITELLTPQQKVLIQVMKEPTGSKGPRLTGNISMPGRYLVLMPF-GRGVNLSRRIKNENER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L PAGMG+++RT + + I D E L + W+ ++ A ++ AP L+ Sbjct: 141 DRLRA-LGILIKPAGMGLLVRTEAENVPEKAIIEDLEALKKQWETIQLQASSTRAPALLG 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF--- 346 + + I+R +RD+Y D++ I+V G + K + + + Sbjct: 200 RDDDFIQRVLRDIYTADVNRIVVDSSLGLKRVKQQLMSWNGNKLPAGVLIDHHREPVSIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + + + V LPS GY+II TEAL IDVNSG TR +T L TN EA Sbjct: 260 EYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATARETVLWTNCEA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIARQLRLR++AG+I+VDFIDM+ +++ V + ++LK D++R Q+ +S GL+E Sbjct: 320 ATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFSKALKADKSRPQIAQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI-----RSQSSVALSILRSVEEYLLQYTAHNIIV 521 ++R+R ++ E + C C G G++ + S I R + + Sbjct: 380 LTRKRQGQNIYELFGRNCPTCGGLGHLVHLPGEPEDSTGEPIERYIPSRNADFAPSRRTP 439 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 + R+ ++E + +V ++ + + Sbjct: 440 ELP---------EPRSDEFDFETSEEPELELVNHPNYQERGNNRRRRRHQRVNDTPSRPP 490 Query: 582 G------SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + P+ + N E L P+ ++ + E Sbjct: 491 RSLVANLPTTAEPAVEVNGNPPVNGERLEPVERTRPTPVTKVKAEPPE 538 Score = 87.0 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ V +++++EL + G+IYL V V P + AAFV Sbjct: 1 MPKQIII----AEQHRIAAVFSEDQIQELIVATGSH--QVGDIYLGIVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G R+GF+ ++ P Sbjct: 55 NIGDSERNGFIHVSDLGP 72 >gi|281413991|ref|ZP_06245733.1| ribonuclease, Rne/Rng family protein [Micrococcus luteus NCTC 2665] Length = 777 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 111/350 (31%), Positives = 191/350 (54%), Gaps = 10/350 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 296 GEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDSVGHKGARLTSQVSLPGRYLVYVPGG 355 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K +P GVI+RTA ++ E++ D L W+ Sbjct: 356 SMTG-ISRKLPDVERSRLKK--ILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWE 412 Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 ++E A + L+Y E +L + +RD++ +D S ++V GE + + ++ + P Sbjct: 413 GIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWDNIEAYVTYVAPH 472 Query: 332 YARIVRQYEDPHPIFFR----SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 + + ++ QL + +V LPS G ++I++TEA+ +DVN+G Sbjct: 473 LLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTG 532 Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 + T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E Sbjct: 533 KFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVEC 592 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 L +DR + QV +++ GL++M+R+R+ + ++E ++ C +C G G + Sbjct: 593 LGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGILIQD 642 Score = 96.6 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KML+ + ++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 228 RKMLV-RQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 286 Query: 63 GNRHGFLPFLEIHPDYYQI 81 R+ L E++ D Q+ Sbjct: 287 RGRNAVLYAGEVNWDAAQL 305 >gi|239979426|ref|ZP_04701950.1| hypothetical protein SalbJ_08319 [Streptomyces albus J1074] Length = 879 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 6/336 (1%) Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 I+ +K+ Q +LVQ+ K+ G+KGA +T+ +SL GRY V +P S ISRK+ Sbjct: 408 HGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTG-ISRKLP 466 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL--NS 282 + + + VP GVI+RTA ++ E++RD E L W +++ A N+ Sbjct: 467 DTERAR--LKGILKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNA 524 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 +P L+Y E ++ R +RD++ +D S++IVSG++ ++ ++ + P ++++ Sbjct: 525 SSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSE 584 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQ 401 +F I+ L +V LPS G ++I++TEA++ +DVN+G+ T + +E+T + Sbjct: 585 TDVFATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTR 644 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 NLEAAEEI RQLRLRDL G++V+DFIDM + N V ++L E L +DR + QV +++ Sbjct: 645 NNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS 704 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 GL++M+R+R+ +LES ++ C +C G G I Sbjct: 705 LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLD 740 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ E T++ VL D+ + E E GN+YL KV V PS++AAF+D G Sbjct: 328 ERVMVVRQSGERTQIGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIG 387 Query: 63 GNRHGFLPFLEI 74 R+ L E+ Sbjct: 388 KGRNAVLYAGEV 399 >gi|269978196|ref|ZP_06185146.1| ribonuclease G [Mobiluncus mulieris 28-1] gi|269933705|gb|EEZ90289.1| ribonuclease G [Mobiluncus mulieris 28-1] Length = 806 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 199/345 (57%), Gaps = 5/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+E + ++LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 288 GEVNWDAAGLNSKTGRIEEALSPGDMVLVQVTKDPIGHKGARLTSQITLAGRHLVLVPSG 347 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + + P + + + +PAG GVI+RTA T+ +++ D E L+++W+ Sbjct: 348 AMTGISRKL---PEEERKRLKTVLKTMIPAGFGVIVRTAAEGATEEQLRVDVERLVKIWE 404 Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + +P L++ E L R +RD++ +DIS + + GE+ + ++K L P Sbjct: 405 DIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHTISKYVKELSPEL 464 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + +ED +F I+ QL + +V LPS GY+II++TEA+ IDVN+GR Sbjct: 465 GERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGA 524 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L +DR Sbjct: 525 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDR 584 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 R QV +++ GL++M+R+R+ ++E+ + C C G G+I Sbjct: 585 TRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 629 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 +V +L D + E + + GN+YL KV V S++AAFVD G R+ L E++ Sbjct: 232 QVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 291 Query: 76 PD 77 D Sbjct: 292 WD 293 >gi|253575701|ref|ZP_04853037.1| ribonuclease [Paenibacillus sp. oral taxon 786 str. D14] gi|251845039|gb|EES73051.1| ribonuclease [Paenibacillus sp. oral taxon 786 str. D14] Length = 405 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 183/329 (55%), Gaps = 2/329 (0%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + K+ K++ I E++K Q L+VQ+VKE GNKGA VTT+ SL GR+ V MP Sbjct: 79 IDDVLHPHLEKQPKQKPSIAELLKPGQELVVQVVKEAIGNKGARVTTHYSLPGRWLVYMP 138 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + + K ++ G+ILRT I D L + Sbjct: 139 TAGYVAVSKKIA--CEEEKQRLKLLGEELRSEEEGLILRTVAEEEDGKAIAEDLAQLRKQ 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 W ++E A ++ AP +++++ ++I+R +RD+Y + E+I+ + EA F++ ++P Sbjct: 197 WAAIQEKAKHAAAPVVLHQDLSMIQRLMRDVYSPETDELIMDCPEQAEEALAFLQAMLPG 256 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + +E PIF + Q++ Q ++ LP GY++ + TEAL IDVN+G+ T Sbjct: 257 ETPRIIVHESEVPIFDYYEVRPQMEKDFQRKIWLPGGGYLVWDTTEALTVIDVNTGKFTG 316 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +EDT +TNLEAA+E+AR +RLRD G+I+VDFIDM ++ +V ++L+++L DR Sbjct: 317 GDSLEDTVFRTNLEAAQEMARLIRLRDTGGIIIVDFIDMNSDEHRSAVWERLEQALAGDR 376 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLEST 480 + + + GLLEM+R+R+R + + Sbjct: 377 TQHHILGWTKLGLLEMTRKRMREEITVIS 405 Score = 98.9 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +M I T + +L + ++ E E + + G+ KV V P +QAAFVD G Sbjct: 12 KRM-IVHCGPGSTEIALLENGKLVEYAAERSQHRGLVGSFVKGKVVNVIPGMQAAFVDIG 70 Query: 63 GNRHGFLPFLEI-HPDYYQIPF 83 ++ FL ++ HP + P Sbjct: 71 QKKNAFLYIDDVLHPHLEKQPK 92 >gi|294787320|ref|ZP_06752573.1| putative ribonuclease, Rne/Rng family domain protein [Parascardovia denticolens F0305] gi|294484676|gb|EFG32311.1| putative ribonuclease, Rne/Rng family domain protein [Parascardovia denticolens F0305] Length = 1028 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 127/436 (29%), Positives = 227/436 (52%), Gaps = 16/436 (3%) Query: 80 QIPFSDRQA---LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 Q + R+ L+ +V +D + I + + V I + Sbjct: 497 QDFLARREKVDRLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLP 556 Query: 137 SIISANNDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194 S+ +A D+ + V G D + + ++ + +LVQ+ K+ G+KGA Sbjct: 557 SMEAAFVDIGQHRNGVLYAGEVNWDATRLEGQPRLVEHAFRPGDDVLVQVTKDPIGHKGA 616 Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254 +T+ +++AGRY VL+P+ +SRK+ + + + P MGVI+RTA Sbjct: 617 RLTSQITVAGRYLVLVPSGG-ITGVSRKLPDRERTR--LKSIVSTISPDNMGVIIRTAAE 673 Query: 255 SRTKIEIKRDFEYLMRLWDNVRE---LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311 ++ +KRD +L+R W +V++ +S PHL+ E +++ R IRD++ D +++I Sbjct: 674 GVSEDALKRDMGHLVRQWQSVQDNLKKYESSKRPHLLLGEPDVVIRVIRDIFNDDFNKLI 733 Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPS 367 V G+ Y ++++ P + +++ F R I+ QL + +V LPS Sbjct: 734 VEGDGVYERIARYLEVAAPDLKDRLEKWDPEEHEGKDVFDRWSIDSQLRKGMERKVYLPS 793 Query: 368 RGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 G ++I++TEA+ +IDVN+GR + +E+T + NLEAAEEI RQLRLRD+ G+I++D Sbjct: 794 GGSLVIDRTEAMTTIDVNTGRFIGKGQSLEETVTKCNLEAAEEIVRQLRLRDIGGMIMID 853 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 F+DM +N V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C Sbjct: 854 FVDMVMPQNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPT 913 Query: 487 CKGAGYIRSQSSVALS 502 C G G+I S Sbjct: 914 CGGRGFILHDEPTVSS 929 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++++ H ++V VL DN + E + GNIY +V V PS++AAFVD G Sbjct: 508 RLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLPSMEAAFVDIGQ 567 Query: 64 NRHGFLPFLEIHPD 77 +R+G L E++ D Sbjct: 568 HRNGVLYAGEVNWD 581 >gi|315227119|ref|ZP_07868906.1| ribonuclease G [Parascardovia denticolens DSM 10105] gi|315119569|gb|EFT82702.1| ribonuclease G [Parascardovia denticolens DSM 10105] Length = 1035 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 127/436 (29%), Positives = 227/436 (52%), Gaps = 16/436 (3%) Query: 80 QIPFSDRQA---LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 Q + R+ L+ +V +D + I + + V I + Sbjct: 504 QDFLARREKVDRLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLP 563 Query: 137 SIISANNDVVSNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194 S+ +A D+ + V G D + + ++ + +LVQ+ K+ G+KGA Sbjct: 564 SMEAAFVDIGQHRNGVLYAGEVNWDATRLEGQPRLVEHAFRPGDDVLVQVTKDPIGHKGA 623 Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGA 254 +T+ +++AGRY VL+P+ +SRK+ + + + P MGVI+RTA Sbjct: 624 RLTSQITVAGRYLVLVPSGG-ITGVSRKLPDRERTR--LKSIVSTISPDNMGVIIRTAAE 680 Query: 255 SRTKIEIKRDFEYLMRLWDNVRE---LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311 ++ +KRD +L+R W +V++ +S PHL+ E +++ R IRD++ D +++I Sbjct: 681 GVSEDALKRDMGHLVRQWQSVQDNLKKYESSKRPHLLLGEPDVVIRVIRDIFNDDFNKLI 740 Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPS 367 V G+ Y ++++ P + +++ F R I+ QL + +V LPS Sbjct: 741 VEGDGVYERIARYLEVAAPDLKDRLEKWDPEEHEGKDVFDRWSIDSQLRKGMERKVYLPS 800 Query: 368 RGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 G ++I++TEA+ +IDVN+GR + +E+T + NLEAAEEI RQLRLRD+ G+I++D Sbjct: 801 GGSLVIDRTEAMTTIDVNTGRFIGKGQSLEETVTKCNLEAAEEIVRQLRLRDIGGMIMID 860 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 F+DM +N V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C Sbjct: 861 FVDMVMPQNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPT 920 Query: 487 CKGAGYIRSQSSVALS 502 C G G+I S Sbjct: 921 CGGRGFILHDEPTVSS 936 Score = 90.8 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++++ H ++V VL DN + E + GNIY +V V PS++AAFVD G Sbjct: 515 RLMVVREHGHHSQVSVLEDNVLVEHYISDIDEVASVGNIYQGRVQNVLPSMEAAFVDIGQ 574 Query: 64 NRHGFLPFLEIHPD 77 +R+G L E++ D Sbjct: 575 HRNGVLYAGEVNWD 588 >gi|120404901|ref|YP_954730.1| ribonuclease [Mycobacterium vanbaalenii PYR-1] gi|119957719|gb|ABM14724.1| ribonuclease, Rne/Rng family [Mycobacterium vanbaalenii PYR-1] Length = 961 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 197/355 (55%), Gaps = 13/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + Q I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 422 GEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 481 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D E L + W Sbjct: 482 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEEDIRSDVERLQKRWT 538 Query: 274 NVREL-----ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + A +YEE +++ + IRDL+ +D + + VSG+ ++ D++ + Sbjct: 539 EIEAKAAEITEKKAGAAVALYEEPDVLVKVIRDLFNEDFTGLTVSGDHAWKTINDYVTAV 598 Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P + QYE P F I+ QL +V LPS G ++I++TEA+ +DV Sbjct: 599 APELLPRMTQYEPASPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDV 658 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V ++L Sbjct: 659 NTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRL 718 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 E+L +DR R QV +++ GL++++R+++ + ++E+ + C++C G G + Sbjct: 719 TEALARDRTRHQVSEVTSLGLVQLTRKKLGTGLIEAFSTTCSHCAGRGIMLHGDP 773 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 35/63 (55%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 365 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 424 Query: 75 HPD 77 + + Sbjct: 425 NWE 427 >gi|307700936|ref|ZP_07637961.1| S1 RNA binding domain protein [Mobiluncus mulieris FB024-16] gi|307613931|gb|EFN93175.1| S1 RNA binding domain protein [Mobiluncus mulieris FB024-16] Length = 806 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 198/345 (57%), Gaps = 5/345 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+E + ++LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 288 GEVNWDAAGLNSKTGRIEEALSPGDMVLVQVTKDPIGHKGARLTSQITLAGRHLVLVPSG 347 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + + P + + + +PAG GVI+RTA T+ ++ D E L+++W+ Sbjct: 348 AMTGISRKL---PEEERKRLKTVLKTMIPAGFGVIVRTAAEGATEEQLCVDVERLVKIWE 404 Query: 274 NVRELALN-SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ + +P L++ E L R +RD++ +DIS + + GE+ + ++K L P Sbjct: 405 DIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHTISKYVKELSPEL 464 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-R 391 + +ED +F I+ QL + +V LPS GY+II++TEA+ IDVN+GR Sbjct: 465 GERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGA 524 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 +E+T + NLEAAEEI RQLRLRD+ G++V+DF+DM + N V ++L E L +DR Sbjct: 525 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDR 584 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 R QV +++ GL++M+R+R+ ++E+ + C C G G+I Sbjct: 585 TRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 629 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 +V +L D + E + + GN+YL KV V S++AAFVD G R+ L E++ Sbjct: 232 QVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 291 Query: 76 PD 77 D Sbjct: 292 WD 293 >gi|296139195|ref|YP_003646438.1| ribonuclease, Rne/Rng family [Tsukamurella paurometabola DSM 20162] gi|296027329|gb|ADG78099.1| ribonuclease, Rne/Rng family [Tsukamurella paurometabola DSM 20162] Length = 1040 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 137/562 (24%), Positives = 238/562 (42%), Gaps = 30/562 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K +LVQ+ K+ G+KGA +TT +SLAGR+ V +P Sbjct: 456 GEVNWDAAGLDGNARKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGG 515 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ LKEI + + GVI+RTA + E+ D L W Sbjct: 516 GSAG-ISRKLPDTERKR-LKEILKEIVPA-DAGVIIRTASEGVSAEELAGDVSRLQAQWA 572 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 E A + +YEE +L+ + +RDL+ +D S++++ G + + ++ + P Sbjct: 573 E-IEEASKAKGVRALYEEPDLLVKVVRDLFNEDFSKLVIEGGTAWGTVEKYVSTVAPDLM 631 Query: 334 RIVRQYEDPH----PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 V ++E H +F I+ QL +V LPS G ++I++TEA+ +DVN+G+ Sbjct: 632 PRVERFEKRHADAPDVFAAYRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKF 691 Query: 390 T-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 T +E+T + NLEAAEEI RQ+RLRD+ G+IVVDFIDM + N V ++L E+L Sbjct: 692 TGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALG 751 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 +DR R QV +++ GL++M+R+RI + ++E+ + C C G G I V + Sbjct: 752 RDRTRHQVSEVTSLGLVQMTRKRIGTGLVEAFSTPCQACSGRGIIIHADPVETAGGDDSG 811 Query: 509 EYLLQYTAHNIIVHTHSDVVLYL-----LNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + + K A E ++ E + Sbjct: 812 RSGEKSEGSRKKRKRSKSDGAQQPVVAPKDDKAAHKS--EHPMFKAMAQHHDDEDSTP-- 867 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++ +A+ G ++ + + P + S ++ +E Sbjct: 868 -VDGAQDGEAVAEAPADAGKPAEQSTEPTQEPKRERRRRREPKQDAPSQAATIESAPTET 926 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + A + A V+ + + A Sbjct: 927 APAP-----------QAAAESTPAAPVAAEPAAAEPASAVAPSAPRRRRVARKAPTTTSA 975 Query: 684 HGFTENYDVSIPPVSTPEMESS 705 T D++ P + + Sbjct: 976 AAQTIVVDLAQEAPGAPAVTAP 997 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D + E S + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 399 TQVAVLEDGVLVEHFVTSSSSASMVGNIYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEV 458 Query: 75 HPD 77 + D Sbjct: 459 NWD 461 >gi|163841977|ref|YP_001626382.1| ribonuclease E [Renibacterium salmoninarum ATCC 33209] gi|162955453|gb|ABY24968.1| ribonuclease E [Renibacterium salmoninarum ATCC 33209] Length = 971 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 131/565 (23%), Positives = 242/565 (42%), Gaps = 26/565 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D K I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 412 GEVNWDAAKLDGAPRRIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGG 471 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + + +P GVI+RTA ++ E+ D L W+ Sbjct: 472 SMTG-ISRKLPDVERNRLKR--ILKDNLPENAGVIVRTAAEGASEEELTHDINRLRVQWE 528 Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 + A ++ ++Y E +L + +RD++ +D +++IVSGE+ + + ++ + P Sbjct: 529 GIESQASSTKTLAPEMLYGEPHLTIKVVRDVFNEDFAKLIVSGEEAWDTVEAYVTYVAPD 588 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST- 390 + ++ IF I+ Q+ + +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 589 LVDRLEKWTSNEDIFAAHRIDEQISKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTG 648 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +E+T + NLEAAEE+ RQLRLRD+ G+IV+DFIDM + N V ++L E L +D Sbjct: 649 SGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRD 708 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 R + QV +++ GL++M+R+R+ + +LE + C C G G + + V R Sbjct: 709 RTKHQVAEVTSLGLIQMTRKRMGTGLLEVFGEQCEACAGRGVVTHEEPVEH---RRTTHT 765 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + + N+ R ++ + + + Sbjct: 766 IAAEQHNPRAENQRPSRGERKRNRNRQQ-----------------NQVEPEAEELTEDEK 808 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + + A + +A+ + K ++ D + E + R Sbjct: 809 SAKASAARAALANIAAAAQAAHEHDGEEPIDAVDSVVKPQASHDAAVLTIGGEKVEIPRG 868 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 P V + ++ S ++ Sbjct: 869 EHVDDAPHMPELTLDGLADVFNHLVPEDSEPKSRSRRPRRHRAAGRAQGAANSNEIQSIE 928 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKK 715 S + P ++ ++ DP KK Sbjct: 929 GESAGGKTVPVAKAPSAKVDPESKK 953 Score = 85.8 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 13 EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72 E ++ VL D + E + + GN+YL KV V PS++AAFVD R+ L Sbjct: 353 ERIQIGVLEDGILAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDICRGRNAVLYAG 412 Query: 73 EIHPDYYQIPFSDR 86 E++ D ++ + R Sbjct: 413 EVNWDAAKLDGAPR 426 >gi|118618976|ref|YP_907308.1| ribonuclease E Rne [Mycobacterium ulcerans Agy99] gi|118571086|gb|ABL05837.1| ribonuclease E Rne [Mycobacterium ulcerans Agy99] Length = 988 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 112/359 (31%), Positives = 191/359 (53%), Gaps = 17/359 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V + Sbjct: 416 GEVNWDAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVAGA 475 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D L W+ Sbjct: 476 SSTG-ISRKLPDTERQR--LKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERWN 532 Query: 274 NVRELALNSVAPHLV-----YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + A+ YEE +++ + IRDL+ +D + ++VSG+ + +++ + Sbjct: 533 QIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSV 592 Query: 329 MPSYARIVRQYED--------PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE +F I+ L +V LPS G ++I++TEA+ Sbjct: 593 APDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEHLAKAMDRKVWLPSGGTLVIDRTEAMT 652 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +DVN+G+ T +E T + NLEAAEEI RQLRLRD+ G++V+DFIDM + N V Sbjct: 653 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 712 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + C +C G G + Sbjct: 713 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPHCSGRGILLHADP 771 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 359 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 418 Query: 75 HPDYYQIPFSDRQ 87 + D + +DR+ Sbjct: 419 NWDAAGLGGADRK 431 >gi|311741290|ref|ZP_07715114.1| ribonuclease E [Corynebacterium pseudogenitalium ATCC 33035] gi|311303460|gb|EFQ79539.1| ribonuclease E [Corynebacterium pseudogenitalium ATCC 33035] Length = 1294 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 140/581 (24%), Positives = 240/581 (41%), Gaps = 23/581 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K R ++ +K+ +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 479 GEIDWRKTKLHGRARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPG- 537 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + G VP G I+RTA + + I D L W+ Sbjct: 538 GRSAGISRKLPAPERKR--LKDILGRVVPGDGGAIIRTAAENVPEEAIATDVNRLHSRWE 595 Query: 274 N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + +E + P +YEE N++ + +RDL+ +D +E+IV G++ + + ++ + Sbjct: 596 DIVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSM 655 Query: 329 MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P A V +Y F I+ QL +V LPS G ++I++TEA+ IDV Sbjct: 656 APDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 715 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 716 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 775 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499 KE+L +DR R QV +++ GL++M+R+R+ + ++E+ + C C G G I + + Sbjct: 776 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECECCNGRGIIIHQYPVEEAE 835 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 + + + H + + + E ++ Sbjct: 836 DEQRSKHSGRKPKAHKKQHHDPQQHPA-AVAMHKHELDDAAESSSKPKRFKKTQA-PVYG 893 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK-NIECVWQDEALLPIPKSESLEDIQDN 618 + + S +L + V D + P+ E D Sbjct: 894 TESEEAARESAKTSLEDLVANVVVDERGPAQSHGGSEEHSGDHDRSKERGRGRGRRRARK 953 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGV---VSDVSSIQNVIDDSFDMYMEPSDITN 675 E + + + + + +D + + + S Sbjct: 954 RTQTEVSDIEAIAYAAADNAAESDEVQEFNSYVPDADTDADSGAVAKAHPGAGARSKRGK 1013 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 T E ++ + KT Sbjct: 1014 KPRRATRRSKATHTVAGGEQKAPEKETAPEKTAPEKATGKT 1054 Score = 88.1 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E +E + + GNIYL +V V PS++AAFVD G R+G L EI Sbjct: 422 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 481 >gi|289704627|ref|ZP_06501057.1| S1 RNA binding domain protein [Micrococcus luteus SK58] gi|289558660|gb|EFD51921.1| S1 RNA binding domain protein [Micrococcus luteus SK58] Length = 1149 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 111/350 (31%), Positives = 191/350 (54%), Gaps = 10/350 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 338 GEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGG 397 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K +P GVI+RTA ++ E++ D L W+ Sbjct: 398 SMTG-ISRKLPDVERSRLKK--ILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWE 454 Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 ++E A + L+Y E +L + +RD++ +D S ++V GE + + ++ + P Sbjct: 455 GIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGETTWDNIEAYVTYVAPH 514 Query: 332 YARIVRQYEDPHPIFFR----SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 + + ++ QL + +V LPS G ++I++TEA+ +DVN+G Sbjct: 515 LLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTG 574 Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 + T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E Sbjct: 575 KFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVEC 634 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 L +DR + QV +++ GL++M+R+R+ + ++E ++ C +C G G + Sbjct: 635 LGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGILIQD 684 Score = 96.2 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KML+ + ++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 270 RKMLV-RQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 328 Query: 63 GNRHGFLPFLEIHPDYYQI 81 R+ L E++ D Q+ Sbjct: 329 RGRNAVLYAGEVNWDAAQL 347 >gi|123969236|ref|YP_001010094.1| ribonuclease E/G [Prochlorococcus marinus str. AS9601] gi|123199346|gb|ABM70987.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. AS9601] Length = 606 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 130/586 (22%), Positives = 252/586 (43%), Gaps = 15/586 (2%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180 ++ I + E I +A ++ + ++ + P + K+ + I E+++ +Q + Sbjct: 33 QIGDIFLGTVENVLPGIDAAFINIGESEKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE G+KG +T +S+ G+Y +L P +G ISRK N ++ + L Sbjct: 93 LVQVIKEPTGSKGPRLTGSISIPGKYLILQP-YGQGVNISRK-INTETERSRLKALGVLI 150 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G++ RT + + D E+L++ W+N+ +++ S P+L+ + + + +R Sbjct: 151 KPPSTGLLFRTEAEKIKEELLIEDLEHLIQQWENILKVSEASNPPNLIKRDDDFSLKILR 210 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + +I+ + AKDF+ + I + I+ + Q Sbjct: 211 DYIKESTKSLIIDSKFSVIRAKDFLINYESNVDIEFHDNSLNQHILEKYEIKKTIQKALQ 270 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY+II TEAL IDVNSG TR T L TN EAA EI+RQ++LR++ Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDME +++ + + ++K D AR Q+ ++ GL+E++R+R ++ E Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 K C+ C G G++ + + +S L+ ++N+ D+V ++ I+ Sbjct: 391 GKKCSSCDGTGHVENILNHEISYLKIKNVENKSNQSNNLT---SLDIVTSQSTDEQEKII 447 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + E ++ K +N + + + V+ + Sbjct: 448 DKELLNSKDLSKENSSN---------KKENENDNLNQSNSKEKNIITVDLTNEEKIVFSE 498 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + P+ K +N V + + ++ ++ + + I+ Sbjct: 499 LGINPLIKLGKEYLTSNNFVRLKESNKETEKPLDNKKATSKKTKKISQSGEEKIQIKIEA 558 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + S ++ ++ E D S++ Sbjct: 559 NASSKDKTSNKTNESNEVVSTDKKDQIELTDELNNARKKRRRSSAS 604 Score = 75.4 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ +L D+RV+EL + G+I+L V V P + AAF+ Sbjct: 1 MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVSDLGP 72 >gi|194477012|ref|YP_002049191.1| ribonuclease E [Paulinella chromatophora] gi|171192019|gb|ACB42981.1| ribonuclease E [Paulinella chromatophora] Length = 646 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 111/324 (34%), Positives = 183/324 (56%), Gaps = 4/324 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T L+L GRY VL P+ S+G ISR+I + +R Sbjct: 82 ITELLEPRQKVLVQVIKEPTGTKGPRLTGNLTLPGRYLVLQPH-SRGVNISRRIRSESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G +++RT ++ + D E L+ W+ +++ A ++ P L+ Sbjct: 141 NRLRA-LGVLIKPPGASLLIRTEAEEVSEELLIEDLESLLHQWEAIQQAAETAIPPVLLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RDLY ++ +++V K F+ ++ + V + D I Sbjct: 200 RDQDFINRILRDLYSPELLKVVVDSSDAVNRVKGFLGVVQTNLL--VEHHNDSKEILESY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + + V LPS GY+II EAL IDVNSG TR +T L TN EAA E Sbjct: 258 RVNAAIRDALKPRVELPSGGYIIIEPMEALTVIDVNSGSFTRSANARETVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I+VDFIDME +++ + + ++ + D AR Q+ ++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIVDFIDMELRRDQLQLLEHFIQATRDDTARPQIAQLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYI 493 +R ++ E +VC+ C G G++ Sbjct: 378 KRQGQNIYELFGRVCSTCSGLGHV 401 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R+ VL + RV+EL + G++YL V V P + AAF+ Sbjct: 1 MPQQIII----AEQLRIAAVLNEERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVSDLGP 72 >gi|297626046|ref|YP_003687809.1| ribonuclease, Rne/Rng family [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921811|emb|CBL56371.1| Ribonuclease, Rne/Rng family [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 928 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 118/345 (34%), Positives = 190/345 (55%), Gaps = 9/345 (2%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 K I++ +K Q +LVQ K+ G KGA +T ++SL GRY V P+ ISRK+ Sbjct: 566 HKGSRRIEDALKPGQTVLVQASKDPIGAKGARLTGHISLPGRYVVYSPD-GHLSGISRKL 624 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 ++ ++ + + VI+RTA T+ +++D + L WD + + Sbjct: 625 SDTE--RHRLKNIVNDAIDDSSSVIVRTAAEGVTEEALRQDVDRLKAHWDVIEKKVAEGH 682 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI-----VRQ 338 +P +Y E +L R +RDL+ +D +E+IV G+ G +A + + + A Sbjct: 683 SPQQLYVEPDLTLRIVRDLFTEDFNELIVEGDGGPEDAFETVHEYVEHVAPNLADRLEHW 742 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIED 397 +F + I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ T +E+ Sbjct: 743 DTTKGDLFTKYRIDEQISKALERKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGAGGNLEE 802 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 T + NLEAA+EI RQ+RLRDL G+IVVDFIDM N + ++L E L +DR R QV Sbjct: 803 TVTKNNLEAADEIVRQMRLRDLGGMIVVDFIDMVLPANRELLLRRLVECLGRDRTRHQVS 862 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +++ GL++M+R+RI + + E+ T+ C C G GY+R VA Sbjct: 863 EVTSLGLVQMTRKRIGTGLAEAFTEECETCGGRGYVRHDEPVASQ 907 Score = 96.6 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM+I + T++ VL D + E + + + GNIYL KV V PS++AAF+D G Sbjct: 487 RKMII-RQREDYTQLAVLEDGLLVEHYVDRKASASLIGNIYLGKVQNVLPSMEAAFIDIG 545 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 546 RGRNAVLYAGEVNWD 560 >gi|258645285|ref|ZP_05732754.1| cytoplasmic axial filament protein [Dialister invisus DSM 15470] gi|260402635|gb|EEW96182.1| cytoplasmic axial filament protein [Dialister invisus DSM 15470] Length = 472 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 111/391 (28%), Positives = 191/391 (48%), Gaps = 5/391 (1%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +L Q++K + KGA +T +S+ G+Y+V + T + + + + Sbjct: 81 EGSPILAQVIKSDTDMKGALITEKISMLGKYAVTLSGTGYIGVSKKIRS--ESVRKRLKE 138 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 MG+I+RTA + E ++D L WD +++ +P L+Y E ++I Sbjct: 139 IGKEICAEHMGLIIRTAAENADMDEFRKDITRLKENWDIIQKRFRMEKSPTLLYRESDII 198 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 +A+RD K +I K Y + + Y++ P+ + IE Q+ Sbjct: 199 VKALRDYVNKGTEILITDNRKIYERICKLNESEHTIEPDKISLYKERMPLLKKEEIEEQI 258 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA-LQTNLEAAEEIARQL 414 L + V LPS G +II TEAL IDVNSG R+ + A N EAA EIARQ+ Sbjct: 259 HLLFKRRVELPSGGSLIIEDTEALTVIDVNSGAFNRQGIPHEEAVYLINQEAAIEIARQV 318 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR + G+I++DFIDM+++ + + L+ LKKD+ + V +++ GL+EM+R+R Sbjct: 319 RLRGIGGMILIDFIDMQKENQKKDIVGILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTH 378 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S++++ +C C G G+I S SV I R +E A ++++ H +V L + Sbjct: 379 SLIKNYCDICPICNGTGHILSVQSVIQQIHRELETVKRYGGARDLVIRCHPEVAARLKEE 438 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++A + F I + L +++ + Sbjct: 439 QKAG--YFMKYFNREIMIEENDHLNREVYSV 467 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L D++ +ET + V R +++ +L+ E + +I G IY V + P++ FVD Sbjct: 1 MNRVILSDST--DETILAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVD 58 Query: 61 YGGNRHGFL 69 G ++ FL Sbjct: 59 IGIGKNAFL 67 >gi|284099270|ref|ZP_06385987.1| ribonuclease, Rne/Rng family [Candidatus Poribacteria sp. WGA-A3] gi|283830400|gb|EFC34610.1| ribonuclease, Rne/Rng family [Candidatus Poribacteria sp. WGA-A3] Length = 327 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 90/319 (28%), Positives = 170/319 (53%) Query: 247 VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 + ++ ++K D +L +W ++ + AP ++ + +L R +RDL+ K+ Sbjct: 1 IHCPDGEQGVSEEDLKSDVGFLTAMWQDIVKKQDIYPAPAALHTDLDLTLRVVRDLFTKN 60 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 + +++ ++ K+F++ +P + Y+ +F GIE+++ +V L Sbjct: 61 VKRLLIDSKEECAAVKEFVRRYLPDQTSRIVHYDKDESLFDHLGIEMEISRALSRKVWLK 120 Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 S G+++I+ TEA+ +DVN+GR + E+T L+ NLEAA EIA Q++LR + G+I++D Sbjct: 121 SGGHIVIDHTEAMTVVDVNTGRYVGKRDQEETILRNNLEAAREIAYQIKLRGIGGIIIID 180 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDME +N V + L +++ D+AR ++ IS+ GL+E+SR+R+R +L + + VC+ Sbjct: 181 FIDMERGRNRDKVYQALVDAMGNDKARTRISRISDLGLIEISRERVREDLLRTLSDVCSD 240 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G GY RS +V +LR + ++V H +V L + + + + F Sbjct: 241 CDGRGYTRSALTVVYDMLRDIRRIGRAAGQQTVVVGAHPHIVEMLQETEPEALEQLQREF 300 Query: 547 GVSINVVIGIELADKLFYI 565 I V L + + + Sbjct: 301 HYQIIVNADPLLPLEQYDL 319 >gi|56964368|ref|YP_176099.1| ribonuclease G [Bacillus clausii KSM-K16] gi|56910611|dbj|BAD65138.1| ribonuclease G [Bacillus clausii KSM-K16] Length = 497 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 186/402 (46%), Gaps = 12/402 (2%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I + + + VQ+ KE KG ++ +S+ G+Y V MP + R Sbjct: 87 QTKSISQFVSPGDTIAVQVTKEGTNEKGPRLSGVVSIPGKYVVYMPEGAYVAVSRRI--E 144 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + A ++ G I+RTA A+ E++RD +L LW + Sbjct: 145 SEHVRASLHTALENKLQHNEGAIVRTAAANAPLEEVERDLVFLRTLWQKTLRHQEQAP-- 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L+Y L++ + + ++E++V YR K ++ + Y Sbjct: 203 ALIYRAATLVETLLLGYLNEQVTEVVVDDIDDYRLMKQLVQTDDKDKVK---LYAHKGSS 259 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F + I QL + + L + +++I++TEA+ IDVN+G+ T + +T L N Sbjct: 260 FQSARISAQLAKAQKRRIWLKNGAFLVIDETEAMTVIDVNTGKFTGKFAQSETVLAVNKL 319 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA E A+Q+RLR+ +G+IV+DFIDM+ + +V++ ++ +LKKDR + V + GLL Sbjct: 320 AAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLAVQQTMERALKKDRVKTSVRGFTKLGLL 379 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EM+R++ R S+ ++ T C C G G + + A + R + E A ++V + Sbjct: 380 EMTRKKTRLSMAKTVTVECKACAGTGAVLAGHGHAFMLERLILEE----QAEALVVAVTA 435 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIE 566 ++ L+ E+ GV++ +V L + I+ Sbjct: 436 ELRSLLVGVGDLYKERLESLAGVTLFLVTDNSLPQAKPYSID 477 Score = 101 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 1 MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M ++I + R V+L +N V E FES + Q+ G+++L KV RV P ++AAFV Sbjct: 1 MEQSIVI--TKGINKREAVLLENNEVVEWFFESNDRPQMVGSVFLGKVERVLPGMEAAFV 58 Query: 60 DYGGNRHGFLPFLEI 74 D G ++GFL E+ Sbjct: 59 DIGTGKNGFLHRDEL 73 >gi|328907072|gb|EGG26838.1| S1 RNA binding domain protein [Propionibacterium sp. P08] Length = 878 Score = 200 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ +K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 501 GEVDWAKYGKEGEDKRIEHALKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 559 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 560 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLIRDINRLKAQWE 617 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + A NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 618 VIERKASNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPNDAYDTIKAYVDHVA 677 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + D F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 678 PEMVSRLTHWKHDDKDPFAEYRIDEQIAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 737 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IVVDFIDM N + ++L E L Sbjct: 738 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLPTNRELLVRRLTECL 797 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 798 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEECEACGGRGYHRFDKPVDSQ 852 Score = 90.4 bits (222), Expect = 9e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V S++AAF+D G Sbjct: 433 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLSSMEAAFIDIG 491 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 492 RGRNAVLYAGEVDWAKYGKEGEDK 515 >gi|257068982|ref|YP_003155237.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810] gi|256559800|gb|ACU85647.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810] Length = 952 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 192/353 (54%), Gaps = 7/353 (1%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 508 GEVNWDAVGLEGQPRRIELALKSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFVPGG 567 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K +P GVI+RTA ++ E+ D E L W+ Sbjct: 568 SMTG-ISRKLPDTERARLKK--IMRQIIPEDAGVIVRTAAEGASEEELTHDVERLRAQWE 624 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + + + AP + +E ++ + +RD++ +D + +IV G+K + E ++ + P Sbjct: 625 KITKAQKSRSAPVALSQEPDIAIKVVRDVFNEDFTSLIVEGDKVHDEVHSYVSDVAPDLL 684 Query: 334 RIVRQY---EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 V ++ +F + I+ QL +V LPS G ++I++TEA+ +DVN+G+ T Sbjct: 685 DRVTRHVPTSPGKDVFAKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGKFT 744 Query: 391 -REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L + Sbjct: 745 GSGGSLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGR 804 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 DR + QV +++ GL++M+R+R+ ++E+ + C +C G G + Sbjct: 805 DRTKHQVAEVTSLGLVQMTRKRVGQGLVETFSHSCEHCNGRGLLVDMDGEHQH 857 Score = 92.7 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ T++ VL D+ + E + + + GN+Y+ KV V PS++AAFVD G Sbjct: 439 KRSMVVRERPGRTQIAVLEDDVLVEHYVAQKSQTSMVGNVYMGKVQNVLPSMEAAFVDIG 498 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 499 KGRNAVLYAGEVNWD 513 >gi|315093134|gb|EFT65110.1| S1 RNA binding domain protein [Propionibacterium acnes HL060PA1] Length = 800 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 423 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 481 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 482 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 539 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 540 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 599 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 600 PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 659 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 660 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 719 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 720 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 774 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 355 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 413 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 414 RGRNAVLYAGEVDWAKYGKEGEDK 437 >gi|239917521|ref|YP_002957079.1| ribonuclease, Rne/Rng family [Micrococcus luteus NCTC 2665] gi|239838728|gb|ACS30525.1| ribonuclease, Rne/Rng family [Micrococcus luteus NCTC 2665] Length = 1091 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 111/350 (31%), Positives = 191/350 (54%), Gaps = 10/350 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 296 GEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDSVGHKGARLTSQVSLPGRYLVYVPGG 355 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K +P GVI+RTA ++ E++ D L W+ Sbjct: 356 SMTG-ISRKLPDVERSRLKK--ILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWE 412 Query: 274 NVRELALNSVAPH--LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 ++E A + L+Y E +L + +RD++ +D S ++V GE + + ++ + P Sbjct: 413 GIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWDNIEAYVTYVAPH 472 Query: 332 YARIVRQYEDPHPIFFR----SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 + + ++ QL + +V LPS G ++I++TEA+ +DVN+G Sbjct: 473 LLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTG 532 Query: 388 RST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 + T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E Sbjct: 533 KFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVEC 592 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 L +DR + QV +++ GL++M+R+R+ + ++E ++ C +C G G + Sbjct: 593 LGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGILIQD 642 Score = 95.4 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KML+ + ++ VL D + E + + GN+YL KV V PS++AAFVD G Sbjct: 228 RKMLV-RQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 286 Query: 63 GNRHGFLPFLEIHPDYYQI 81 R+ L E++ D Q+ Sbjct: 287 RGRNAVLYAGEVNWDAAQL 305 >gi|314923179|gb|EFS87010.1| S1 RNA binding domain protein [Propionibacterium acnes HL001PA1] gi|314966947|gb|EFT11046.1| S1 RNA binding domain protein [Propionibacterium acnes HL082PA2] gi|314981288|gb|EFT25382.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA3] gi|315091708|gb|EFT63684.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA4] gi|315103219|gb|EFT75195.1| S1 RNA binding domain protein [Propionibacterium acnes HL050PA2] gi|315107020|gb|EFT78996.1| S1 RNA binding domain protein [Propionibacterium acnes HL030PA1] gi|327327768|gb|EGE69544.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes HL103PA1] Length = 803 Score = 200 bits (507), Expect = 8e-49, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|169831609|ref|YP_001717591.1| ribonuclease [Candidatus Desulforudis audaxviator MP104C] gi|169638453|gb|ACA59959.1| ribonuclease, Rne/Rng family [Candidatus Desulforudis audaxviator MP104C] Length = 416 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 116/330 (35%), Positives = 182/330 (55%), Gaps = 3/330 (0%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I++++ Q ++VQ+ K+ GNKG VT ++L G Y+VLMP + ISR+I + +R Sbjct: 88 IRDLLHPGQEVIVQVAKDPLGNKGPRVTMRVNLPGHYTVLMPTVNHVG-ISRRIEDESER 146 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L+E+ GMG I+RTA + D L +LW ++++ + AP L+Y Sbjct: 147 ERLREVVHRARPE-GMGAIVRTAARGIAAEVLADDIRELEKLWRDIQKREAGAAAPSLLY 205 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 E L+ R IRDL+ ++I E +V + + + +ED IF Sbjct: 206 RECGLLPRIIRDLFTEEI-ERLVLDSFTSYARSLTILDTVNPQLKSRVFWEDKPDIFEAY 264 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + +++ Q + L GY+I +Q EAL IDVN+GR T +EDT +TNLEAA E Sbjct: 265 NVNQEINKALQRKTWLRCGGYLIFDQAEALTVIDVNTGRFTGRVDLEDTVYKTNLEAAVE 324 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQLRLR+L G+I++DFIDM +++ V + L E +KKDR R + ++ GL+E++R Sbjct: 325 IARQLRLRNLGGIIIIDFIDMSHEEHRNRVLEVLGEEIKKDRRRTHIMGLTRLGLVELTR 384 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 +++ S+ E C C G G I+ Q Sbjct: 385 KKVHPSLAELLLTNCPQCGGTGKIQGQRKD 414 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 41/77 (53%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + +I ++ TRV +L + E+ E + + + G+I+ V V P ++AAFV+ Sbjct: 1 MLKREIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVN 60 Query: 61 YGGNRHGFLPFLEIHPD 77 G +R+ FL ++ P Sbjct: 61 VGLDRNAFLYVNDVLPQ 77 >gi|314968157|gb|EFT12256.1| S1 RNA binding domain protein [Propionibacterium acnes HL037PA1] Length = 803 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G+ G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGDGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|314987656|gb|EFT31747.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA2] gi|314990136|gb|EFT34227.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA3] Length = 803 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 V NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VVERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|315100973|gb|EFT72949.1| S1 RNA binding domain protein [Propionibacterium acnes HL046PA1] Length = 803 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|313833950|gb|EFS71664.1| S1 RNA binding domain protein [Propionibacterium acnes HL056PA1] Length = 802 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 425 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 483 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 484 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 541 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 542 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 601 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 602 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 661 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 662 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 721 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 722 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 776 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 357 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 415 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 416 RGRNAVLYAGEVDWAKYGKEGEDK 439 >gi|313764664|gb|EFS36028.1| S1 RNA binding domain protein [Propionibacterium acnes HL013PA1] gi|313772478|gb|EFS38444.1| S1 RNA binding domain protein [Propionibacterium acnes HL074PA1] gi|313807312|gb|EFS45799.1| S1 RNA binding domain protein [Propionibacterium acnes HL087PA2] gi|313809819|gb|EFS47540.1| S1 RNA binding domain protein [Propionibacterium acnes HL083PA1] gi|313815731|gb|EFS53445.1| S1 RNA binding domain protein [Propionibacterium acnes HL059PA1] gi|313818358|gb|EFS56072.1| S1 RNA binding domain protein [Propionibacterium acnes HL046PA2] gi|313825653|gb|EFS63367.1| S1 RNA binding domain protein [Propionibacterium acnes HL063PA1] gi|313827897|gb|EFS65611.1| S1 RNA binding domain protein [Propionibacterium acnes HL063PA2] gi|313830732|gb|EFS68446.1| S1 RNA binding domain protein [Propionibacterium acnes HL007PA1] gi|314915159|gb|EFS78990.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA4] gi|314918387|gb|EFS82218.1| S1 RNA binding domain protein [Propionibacterium acnes HL050PA1] gi|314919876|gb|EFS83707.1| S1 RNA binding domain protein [Propionibacterium acnes HL050PA3] gi|314931891|gb|EFS95722.1| S1 RNA binding domain protein [Propionibacterium acnes HL067PA1] gi|314955959|gb|EFT00357.1| S1 RNA binding domain protein [Propionibacterium acnes HL027PA1] gi|314958443|gb|EFT02546.1| S1 RNA binding domain protein [Propionibacterium acnes HL002PA1] gi|314960206|gb|EFT04308.1| S1 RNA binding domain protein [Propionibacterium acnes HL002PA2] gi|314973158|gb|EFT17254.1| S1 RNA binding domain protein [Propionibacterium acnes HL053PA1] gi|314976327|gb|EFT20422.1| S1 RNA binding domain protein [Propionibacterium acnes HL045PA1] gi|314978192|gb|EFT22286.1| S1 RNA binding domain protein [Propionibacterium acnes HL072PA2] gi|314983464|gb|EFT27556.1| S1 RNA binding domain protein [Propionibacterium acnes HL005PA1] gi|315080261|gb|EFT52237.1| S1 RNA binding domain protein [Propionibacterium acnes HL078PA1] gi|315084523|gb|EFT56499.1| S1 RNA binding domain protein [Propionibacterium acnes HL027PA2] gi|315085860|gb|EFT57836.1| S1 RNA binding domain protein [Propionibacterium acnes HL002PA3] gi|315088723|gb|EFT60699.1| S1 RNA binding domain protein [Propionibacterium acnes HL072PA1] gi|315096353|gb|EFT68329.1| S1 RNA binding domain protein [Propionibacterium acnes HL038PA1] gi|315098332|gb|EFT70308.1| S1 RNA binding domain protein [Propionibacterium acnes HL059PA2] gi|315108255|gb|EFT80231.1| S1 RNA binding domain protein [Propionibacterium acnes HL030PA2] gi|327325986|gb|EGE67776.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes HL096PA2] gi|327330687|gb|EGE72433.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes HL097PA1] gi|327332143|gb|EGE73880.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes HL096PA3] gi|327442763|gb|EGE89417.1| S1 RNA binding domain protein [Propionibacterium acnes HL013PA2] gi|327446134|gb|EGE92788.1| S1 RNA binding domain protein [Propionibacterium acnes HL043PA2] gi|327447887|gb|EGE94541.1| S1 RNA binding domain protein [Propionibacterium acnes HL043PA1] gi|327450986|gb|EGE97640.1| S1 RNA binding domain protein [Propionibacterium acnes HL087PA3] gi|327453665|gb|EGF00320.1| S1 RNA binding domain protein [Propionibacterium acnes HL083PA2] gi|328754995|gb|EGF68611.1| S1 RNA binding domain protein [Propionibacterium acnes HL025PA2] gi|328760515|gb|EGF74083.1| ribonuclease, Rne/Rng family protein [Propionibacterium acnes HL099PA1] Length = 803 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|188996908|ref|YP_001931159.1| ribonuclease, Rne/Rng family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931975|gb|ACD66605.1| ribonuclease, Rne/Rng family [Sulfurihydrogenibium sp. YO3AOP1] Length = 470 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 112/402 (27%), Positives = 199/402 (49%), Gaps = 12/402 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 + + I +LVQ+ + KGA ++ +SL G+Y VL+P + +IS K + +R Sbjct: 77 VCKNIDKGSSILVQVKRSPVSTKGAKLSCKISLPGKYLVLLPQSKGKISISSKYEDNDER 136 Query: 230 KNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +KE + L G+I+RTA I DF++L+ LW+ +++ AP Sbjct: 137 NEIKERIKNLLHEINQENFGLIIRTAAKDAPDEAILEDFKFLIELWNQIQKDYNKKKAPS 196 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YEE +RD I K ++ + ++ + +F Sbjct: 197 VIYEEPFKAFAILRDYAGSFSEIISDDVSILKLIKKFVLENFTNANIKMTPYRKRKESLF 256 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + ++ ++ + L S Y++I +TEALV IDVNSG ++ +E+TA + NLEA Sbjct: 257 YEYELDKLINKILSPYAYLKSGSYLVIQETEALVVIDVNSGSCHKQKNLEETAFRINLEA 316 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 EI RQ+RLRDL+G++V+DFIDM +++ ++ ++LKE KKD+ V++ ++ GLLE Sbjct: 317 IPEIVRQIRLRDLSGIVVIDFIDMINQEHKEAIVERLKEEFKKDKRPVKIKGLTQLGLLE 376 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 +SR+++ S+++ + C +C G GYI+SQ V + +++ + II S Sbjct: 377 LSRKKLEESLIKQLSDYCQHCYGRGYIKSQDVVIFELEKTINKLKPFAKMKIIINPKLSK 436 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 V LL + + + ++ F +EK Sbjct: 437 AVDNLLENLKLK---------ELVEIEYNNKMQLDKFEVEKV 469 Score = 61.5 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 +L DN EL E + G+IY KV R +++A FVD G ++ FLP +I Sbjct: 18 ILEDNIPVELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDIGEDKEAFLPKKDI 73 >gi|145223221|ref|YP_001133899.1| ribonuclease [Mycobacterium gilvum PYR-GCK] gi|315443679|ref|YP_004076558.1| ribonuclease, Rne/Rng family [Mycobacterium sp. Spyr1] gi|145215707|gb|ABP45111.1| ribonuclease, Rne/Rng family [Mycobacterium gilvum PYR-GCK] gi|315261982|gb|ADT98723.1| ribonuclease, Rne/Rng family [Mycobacterium sp. Spyr1] Length = 1016 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 119/359 (33%), Positives = 199/359 (55%), Gaps = 17/359 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + Q I++ +K ++VQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 445 GEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 504 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + ++ + VP+ GVI+RTA + +I+ D E L + W Sbjct: 505 SSTG-ISRKLPDTERQR--LKEILREVVPSNAGVIIRTASEGVKEDDIRTDVERLQKRWT 561 Query: 274 NVRELA-----LNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++ A + A +YEE +++ + IRDL+ +D S +IVSG++ ++ D++ + Sbjct: 562 DIEAKAAEVTAKKAGAAVALYEEPDVLVKVIRDLFNEDFSNLIVSGDQAWKTIDDYVTAV 621 Query: 329 MPSYARIVRQYEDPHPI--------FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 P + +YE F I+ QL +V LPS G ++I++TEA+ Sbjct: 622 APELLPRITRYEPAGSPEAGTAPDVFAVHRIDEQLAKAMDRKVYLPSGGTLVIDRTEAMT 681 Query: 381 SIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 +DVN+G+ T +E T + NLEAAEE RQLRLRD+ G++V+DFIDM + N V Sbjct: 682 VVDVNTGKFTGSGGNLEQTVTRNNLEAAEETVRQLRLRDIGGIVVIDFIDMVLESNRDLV 741 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 ++L E+L +DR R QV +++ GL++++R+R+ + ++E+ + CT+C G G + Sbjct: 742 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTTCTHCSGRGIMLHGDP 800 Score = 99.7 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D V E S + + GNIYL V V PS++AAFVD G R+G L E+ Sbjct: 388 TQIAVLEDGVVVEHFVTSAAQVSLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 447 Query: 75 HPD 77 + + Sbjct: 448 NWE 450 >gi|328753674|gb|EGF67290.1| S1 RNA binding domain protein [Propionibacterium acnes HL020PA1] Length = 803 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 121/355 (34%), Positives = 188/355 (52%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KG +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGPLLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|313791713|gb|EFS39824.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA1] gi|313802203|gb|EFS43435.1| S1 RNA binding domain protein [Propionibacterium acnes HL110PA2] gi|313838530|gb|EFS76244.1| S1 RNA binding domain protein [Propionibacterium acnes HL086PA1] gi|314963012|gb|EFT07112.1| S1 RNA binding domain protein [Propionibacterium acnes HL082PA1] gi|315077657|gb|EFT49713.1| S1 RNA binding domain protein [Propionibacterium acnes HL053PA2] gi|327452935|gb|EGE99589.1| S1 RNA binding domain protein [Propionibacterium acnes HL092PA1] Length = 803 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLAECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.3 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|313837377|gb|EFS75091.1| S1 RNA binding domain protein [Propionibacterium acnes HL037PA2] gi|314927950|gb|EFS91781.1| S1 RNA binding domain protein [Propionibacterium acnes HL044PA1] gi|314971761|gb|EFT15859.1| S1 RNA binding domain protein [Propionibacterium acnes HL037PA3] Length = 800 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ +K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 423 GEVDWAKYGKEGEDKRIEHALKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 481 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 482 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLIRDINRLKAQWE 539 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + A NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 540 VIERKASNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPNDAYDTIKAYVDHVA 599 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + D F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 600 PEMVSRLTHWKHDDKDPFAEYRIDEQIAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 659 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IVVDFIDM N + ++L E L Sbjct: 660 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLPTNRELLVRRLTECL 719 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 720 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEECEACGGRGYHRFDKPVDSQ 774 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V S++AAF+D G Sbjct: 355 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLSSMEAAFIDIG 413 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 414 RGRNAVLYAGEVDWAKYGKEGEDK 437 >gi|313820120|gb|EFS57834.1| S1 RNA binding domain protein [Propionibacterium acnes HL036PA1] gi|313823071|gb|EFS60785.1| S1 RNA binding domain protein [Propionibacterium acnes HL036PA2] gi|314925348|gb|EFS89179.1| S1 RNA binding domain protein [Propionibacterium acnes HL036PA3] Length = 803 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 94.3 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|313813141|gb|EFS50855.1| S1 RNA binding domain protein [Propionibacterium acnes HL025PA1] Length = 803 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K I+ V+K+ +LVQ+ K+ G KGA +T+++S+ GR+ V P Sbjct: 426 GEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPG- 484 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ + ++ K +P+ VI+RTA T+ ++ RD L W+ Sbjct: 485 GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWE 542 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + NS AP ++Y E +L R IRDL+ D SE++++G G +A D +K + A Sbjct: 543 VIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA 602 Query: 334 RIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + F I+ Q+ + +V LPS G ++I++TEA+ IDVN+G+ Sbjct: 603 PEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGK 662 Query: 389 ST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 T +E T NLEAAEEI RQLRLRD+ G+IV+DFIDM N + ++L E L Sbjct: 663 FTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECL 722 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 +DR R QV +++ GL++M+R++I + + E+ T+ C C G GY R V Sbjct: 723 GRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQ 777 Score = 93.9 bits (231), Expect = 8e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 KM++ S + +++ VL D + E + GNIYL KV V PS++AAF+D G Sbjct: 358 RKMIVRQSD-DYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 416 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDR 86 R+ L E+ Y D+ Sbjct: 417 RGRNAVLYAGEVDWAKYGKEGEDK 440 >gi|152967401|ref|YP_001363185.1| ribonuclease, Rne/Rng family [Kineococcus radiotolerans SRS30216] gi|151361918|gb|ABS04921.1| ribonuclease, Rne/Rng family [Kineococcus radiotolerans SRS30216] Length = 1244 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 110/328 (33%), Positives = 185/328 (56%), Gaps = 8/328 (2%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + I+ +K+ +LVQ+ K+ G+KGA +T+ +SL GRY V +P Sbjct: 802 GEVNWDAAGLEGQPRRIEAALKSGDPVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPRG 861 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S ISRK+ + + K VP G GVI+RTA + E+ D + L W+ Sbjct: 862 SMTG-ISRKLPDTERARLKK--VLKQVVPEGAGVIVRTAAEGVAEEELAADVQRLQATWE 918 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ A + AP L++ E +L R +RD++ +D +++++SG++ + + ++ + P A Sbjct: 919 AIQAKASSKNAPVLLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWETVRGYVDDVAPDLA 978 Query: 334 RIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 + +++ +F I+ QL +V LPS G ++I+ TEA+ +DVN+G+ Sbjct: 979 ERLERWDGGAGGAEDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPTEAMHVVDVNTGKF 1038 Query: 390 T-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 T +E+T + NLEAAEEI RQLRLRD+ G+IV+DFIDM + N V ++L E L Sbjct: 1039 TGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLG 1098 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSV 476 +DR + QV +++ GL++M+R+R + Sbjct: 1099 RDRTKHQVAEVTSLGLVQMTRKRTGQGL 1126 Score = 90.8 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 41/75 (54%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++ ++T++ VL D + E + + GN+YL +V V PS++AAF+D G Sbjct: 733 ERVMVVRQQADKTQIGVLEDGILVEHYGAKLAQTTMVGNVYLGRVQNVLPSMEAAFIDVG 792 Query: 63 GNRHGFLPFLEIHPD 77 R+ L E++ D Sbjct: 793 KGRNAVLYAGEVNWD 807 >gi|254424128|ref|ZP_05037846.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. PCC 7335] gi|196191617|gb|EDX86581.1| ribonuclease, Rne/Rng family protein [Synechococcus sp. PCC 7335] Length = 785 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 147/564 (26%), Positives = 250/564 (44%), Gaps = 15/564 (2%) Query: 107 VTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 I +V I + E SI +A ++ + ++ + P K KR Sbjct: 18 SEDQIQEIIVATGSHQVGDIYLGTVENILPSIDAAFINIGDSDKNGFMHVSDLGPLKLKR 77 Query: 167 Q-YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 I E++ +Q +LVQI+KE GNKG +T ++L GRY VLMP KG +SR+I N Sbjct: 78 MAGSITELLAPQQKVLVQIMKEPTGNKGPRLTGKVTLPGRYLVLMP-YGKGVNLSRRIRN 136 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 +R L+ L PAGMG+++RT + I D E L R W+++++ A+ + P Sbjct: 137 EAERNRLRA-LGILVKPAGMGLLIRTEAEGVPEDAIIEDLESLQRSWEDIQQEAMATRPP 195 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV---RQYEDP 342 L+ + + I++ +RD Y D++ I+ E G + K + + +P Sbjct: 196 SLLNRDDDFIQKVLRDGYNDDVNRIVTDTESGLQRTKKHLTSWNNGRIPSNVLVDYHNEP 255 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 + + + + V LPS GY+II TEAL IDVNSG TR +T L T Sbjct: 256 THVLEYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSATSRETVLWT 315 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 N EAA EIARQLRLR++AG+IVVDFIDM+ K+ V ++ ++++ D++R Q+ ++ Sbjct: 316 NCEAAVEIARQLRLRNIAGVIVVDFIDMDSLKDKMQVLEQFGKAIRADKSRPQISQLTEL 375 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAG---YIRSQSSVALSILRSVEEYLLQYTAHNI 519 GL+E++R+R ++ E + C+ C G G ++ + S L SV + Sbjct: 376 GLVELTRKRQGQNIYELFGQPCSTCGGLGHLAHLPGEDPEKSSQLESVSSPRSAGYSSPS 435 Query: 520 IVHTHSDVVLYLLNQK----RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++ L + ++ E E S N G + +G+ L Sbjct: 436 QSFSNRPTARELRSSSSSSPQSEFQELELLNHPSYNDKNGRGGRRRRRRGAEGASSNRLS 495 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 +G + + E + + + E ++ + +R + Sbjct: 496 RSGSPLPVTVDKGADRNGDERRRRRGSSRGSERVELERTGREAQQDRSQEAQLSDQREEQ 555 Query: 636 RRRRPATD--HHDAGVVSDVSSIQ 657 + + + V +D + Sbjct: 556 NGKPANAEVGSRNKRVRNDRRKSE 579 Score = 80.8 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ V +++++E+ + G+IYL V + PS+ AAF+ Sbjct: 1 MSKQIVI----AEQHRIAAVFSEDQIQEIIVATGSH--QVGDIYLGTVENILPSIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G +++GF+ ++ P Sbjct: 55 NIGDSDKNGFMHVSDLGP 72 >gi|300780654|ref|ZP_07090509.1| ribonuclease E [Corynebacterium genitalium ATCC 33030] gi|300533640|gb|EFK54700.1| ribonuclease E [Corynebacterium genitalium ATCC 33030] Length = 1040 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 147/611 (24%), Positives = 253/611 (41%), Gaps = 45/611 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 414 GEVDWKAAGLGGRARRIEQALKSGDQVLVQVTKDPVGHKGARLTTQISLAGRYLVYVPG- 472 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ P ++ LK+I + G G I+RTA + I D + L W Sbjct: 473 GHSAGISRKLPAPERKR-LKDILVKVVPGKG-GAIIRTAAEGVPEEAIAADVKRLHTQWQ 530 Query: 274 -----NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + +E P +YEE L+ + +RDL+ +D +++V G+K + ++++ + Sbjct: 531 TIRQQSEQEKKSKGSKPVTLYEEPRLLVKVVRDLFNEDFQQLVVDGKKPWNVVSNYVESV 590 Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P A + ++ F ++ Q+ V LPS G ++I++TEA+ IDV Sbjct: 591 APDLADRLELFDRGDHDGQDVFEVYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVIDV 650 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T N+EAAEEI RQLRLRD+ G+I++DFIDM +N V ++ Sbjct: 651 NTGKFTGSGGSLEETVTSNNMEAAEEIVRQLRLRDIGGMIIIDFIDMILPENQELVLRRF 710 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL-- 501 KE+L +DR R QV +++ GL++++R+R+ + ++E+ + C C G G + S V+ Sbjct: 711 KEALGRDRTRHQVSEVTSLGLVQLTRKRLGTGLVETFSTKCECCDGRGIVLSDDPVSATD 770 Query: 502 -------SILRSVEEYLLQYTAHNIIVH------------THSDVVLYLLNQKRATIVEY 542 R + + A + H + N + + Sbjct: 771 SRDDASGRGGRRGNQSRRRKPAQDPAGHPAALAMQGRDDDPSQESGRDTENDVEKDVEQL 830 Query: 543 EARFGVSINVVIGI-ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 E ++ + E D + + S + Sbjct: 831 EELAD-AVVITNDPVEPIDTSDTSDTDDSSDEDRPKRRSSRRRGRRGSGRGKGRPQQETT 889 Query: 602 ALLPIPKSESLEDIQDNIVS----EESTGVIRKRRRRRRRRR--PATDHHDAGVVSDVSS 655 P+ S D +D EE+ + RR+R R +DH + + Sbjct: 890 DAQDTPEDSSGRDDEDASEPAKTYEEAVEEFERSPRRKRNTRGNSTSDHRPRREDYEQAE 949 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPI 712 ++ D +P E G+ G + T P E DP Sbjct: 950 AEDDQPDDSAESAQPRTSDPGRAPERGSRGRRRATRRTTAGRDTARQPVNEKPMQRQDPA 1009 Query: 713 VKKTRWWKRRK 723 K + ++ Sbjct: 1010 KKSSGKAAPQQ 1020 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T V VL D + E +S+ + GNIYL +V V PS++AAF+D G R+G L E+ Sbjct: 357 TEVGVLEDGLLVEHFVDSDDSASMIGNIYLGRVQNVLPSMEAAFIDIGQGRNGVLYAGEV 416 >gi|310286793|ref|YP_003938051.1| ribonuclease, Rne/Rng family [Bifidobacterium bifidum S17] gi|309250729|gb|ADO52477.1| ribonuclease, Rne/Rng family [Bifidobacterium bifidum S17] Length = 960 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 550 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 609 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA + I +D E L+R W+ Sbjct: 610 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWE 666 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ + E+IV G+K Y ++++ + P Sbjct: 667 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAP 726 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 727 DLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 786 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR R +E+T + NLEAAEEIARQLRLRD+ G++++DF+DM N V ++L E Sbjct: 787 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 846 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C C G G+I Sbjct: 847 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPTV 901 Score = 92.0 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 42/75 (56%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N++++ T++ V+ DN + E + GNIYL +V V PS++AAFVD G Sbjct: 481 NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 540 Query: 63 GNRHGFLPFLEIHPD 77 +R+G L E++ D Sbjct: 541 QSRNGVLYAGEVNWD 555 >gi|311063689|ref|YP_003970414.1| ribonuclease G [Bifidobacterium bifidum PRL2010] gi|310866008|gb|ADP35377.1| Rne Ribonuclease G [Bifidobacterium bifidum PRL2010] Length = 955 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 545 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 604 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA + I +D E L+R W+ Sbjct: 605 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWE 661 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ + E+IV G+K Y ++++ + P Sbjct: 662 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAP 721 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 722 DLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 781 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR R +E+T + NLEAAEEIARQLRLRD+ G++++DF+DM N V ++L E Sbjct: 782 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 841 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C C G G+I Sbjct: 842 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPTV 896 Score = 92.0 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 42/75 (56%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N++++ T++ V+ DN + E + GNIYL +V V PS++AAFVD G Sbjct: 476 NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 535 Query: 63 GNRHGFLPFLEIHPD 77 +R+G L E++ D Sbjct: 536 QSRNGVLYAGEVNWD 550 >gi|227504028|ref|ZP_03934077.1| ribonuclease E [Corynebacterium striatum ATCC 6940] gi|227199358|gb|EEI79406.1| ribonuclease E [Corynebacterium striatum ATCC 6940] Length = 1132 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 138/589 (23%), Positives = 241/589 (40%), Gaps = 35/589 (5%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I+ +K+ +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 417 GEVDWRAAGLGGRGRKIENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPG- 475 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + +P G I+RTA + ++ I D L LW+ Sbjct: 476 GRSAGISRKLPVPERKR--LKGILERVIPGDGGAIIRTAAENVSEEAIATDVNRLHNLWE 533 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 ++ + + + + +YEE +L+ + +RDL+ +D +++IV G + Y ++ + Sbjct: 534 DITKRSDHEKSTKGAKPVTLYEEPDLLVKVVRDLFNEDFTKLIVDGRRSYNTVSAYVDSM 593 Query: 329 MPSYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 A V +Y+ F I+ QL +V LPS G ++I++TEA+ IDV Sbjct: 594 AHDLADRVEKYDAREHGGEDAFVTYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 653 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 654 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRL 713 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS-----QSS 498 KE+L +DR R QV +++ GL++M+R+R+ + ++E+ + C C G G I + Sbjct: 714 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLIETFSTECEACHGRGIIIHEYPVDEEQ 773 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK---------RATIVEYEARFGVS 549 + + H V +++ E + + Sbjct: 774 ENDAHEHKGRRPRRERRKPEHDPQQHPAAVAMHRHEEAEEARAAASNDAESHVEQKTSIE 833 Query: 550 -----INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 I V + + + + S+ Q K + D A + Sbjct: 834 DLVAGIIVNDDKDEKREHN--DSQENNRKQRRGRRSRRSNRQEGHTYKEQQDSADDIARI 891 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 +++ ++ D + + + + G + + Sbjct: 892 GYAAADNAAELDDVAEFNSYVADEEPQVEAQVENQEKEQRENEGAKRSRGRGRRRSARTN 951 Query: 665 D-MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 EP + E T S+ P Sbjct: 952 APQKSEPRKSEPRKSEQTYEEAVAEFEASPRRKRRTRGNSRSDHRPQPQ 1000 Score = 83.9 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E +E + + GNIYL +V V PS++AAF+D G R+G L E+ Sbjct: 360 TQVGVLEDDLLVEHFVTTEAQASLIGNIYLGRVQNVLPSMEAAFIDIGQGRNGVLYAGEV 419 >gi|296534857|ref|ZP_06897191.1| ribonuclease E [Roseomonas cervicalis ATCC 49957] gi|296264815|gb|EFH11106.1| ribonuclease E [Roseomonas cervicalis ATCC 49957] Length = 159 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 74/147 (50%), Positives = 89/147 (60%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +MLIDASH EETRVVVL NR+EE D E+E+K+ +KGNIYLAKV RVEPSLQAAFV+ Sbjct: 1 MTKRMLIDASHAEETRVVVLDGNRLEEFDIETENKRPLKGNIYLAKVVRVEPSLQAAFVE 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DR+ LL D E D + + Sbjct: 61 YGGNRHGFLAFGEIHPDYYQIPVADRERLLALQAEESQDEEEDEVSEADADAMVAAIERM 120 Query: 121 EEVAPIANFSQETEEESIISANNDVVS 147 + + S A+ + S Sbjct: 121 ADADEAGDAPDGAAPRSQAMASGESRS 147 >gi|224282348|ref|ZP_03645670.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171] gi|313139492|ref|ZP_07801685.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171] gi|313132002|gb|EFR49619.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171] Length = 952 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 542 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 601 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA + I +D E L+R W+ Sbjct: 602 GMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWE 658 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 + + P L+ E ++ R +RD++ + E+IV G+K Y ++++ + P Sbjct: 659 RINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAP 718 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 719 DLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 778 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR R +E+T + NLEAAEEIARQLRLRD+ G++++DF+DM N V ++L E Sbjct: 779 GRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVE 838 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C C G G+I Sbjct: 839 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPTV 893 Score = 92.0 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 42/75 (56%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N++++ T++ V+ DN + E + GNIYL +V V PS++AAFVD G Sbjct: 473 NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 532 Query: 63 GNRHGFLPFLEIHPD 77 +R+G L E++ D Sbjct: 533 QSRNGVLYAGEVNWD 547 >gi|289548800|ref|YP_003473788.1| ribonuclease, Rne/Rng family [Thermocrinis albus DSM 14484] gi|289182417|gb|ADC89661.1| ribonuclease, Rne/Rng family [Thermocrinis albus DSM 14484] Length = 453 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 19/395 (4%) Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 +K LLVQ V+EE G KG +T + + G+Y V P+ + S+ Sbjct: 74 QVKVGDTLLVQAVREEVGQKGVRLTDKIRIPGKYIVYFPSLGEIRCSSKLDKEG----RC 129 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + ++ G GVI+RT ++ E+ ++ L L+ ++ P +V EE Sbjct: 130 RWVSVLSPHLEGEGVIVRTGSVYASEEEVLQELAQLRNLYRELQNRVKRLKKPKMVLEEY 189 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 KR IRD + ++ EI + + F+ P DP P+ R I Sbjct: 190 PCYKRFIRDHWH-ELEEIYCDDPVLWNDIASFLDSFHPPLLERSVYVRDPTPLINRYHIR 248 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 L V L S GY++I +TEA+ IDVNSG + E++AL+TNLEAA+EIA+ Sbjct: 249 ELFRRLFSKYVWLKSGGYIVIEETEAMTVIDVNSGEP-CGNSQEESALRTNLEAAKEIAK 307 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 Q+ LR+L G+I+VDFIDM+ +N +V K LKE+ +D VQ + GL EM R++ Sbjct: 308 QVILRNLGGIIIVDFIDMKRPENREAVTKALKEAFGEDGCNVQFYGFTRLGLFEMVRRKT 367 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 + S + C C G+G I++++ + + ++ + + Sbjct: 368 KESFPHLLSSSCPVCGGSGRIKAENLFLFELEKDLKSVVASRMRVRVRP----------- 416 Query: 533 NQKRATIVEYEARFGVS-INVVIGIELADKLFYIE 566 ++ + + R GV V ++ + +E Sbjct: 417 -ERSKEVEKLLERLGVRSAEVEATEDVDYNDYEVE 450 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 7/78 (8%) Query: 1 MANKMLIDASHVEETRVV---VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAA 57 MA K+LI +S R V +L V ++D E +I G+I+ KV RV L+ A Sbjct: 1 MAKKLLILSSD----RYVFAFLLEGFDVVKMDMEDRKAPRILGSIFKGKVLRVVKGLEGA 56 Query: 58 FVDYGGNRHGFLPFLEIH 75 FVD G + +LP ++ Sbjct: 57 FVDIGLGKEAYLPLKDLQ 74 >gi|289676060|ref|ZP_06496950.1| ribonuclease G [Pseudomonas syringae pv. syringae FF5] Length = 299 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 162/296 (54%) Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 RLWD + E P ++YE+ L R +RDL I +I + + +++ F+ LM Sbjct: 1 RLWDQIGEQIKTVSPPTVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELM 60 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 P A + Y PIF G+E ++ + +V L S GY++I+ EA+ +IDVN+G Sbjct: 61 PEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAF 120 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 +E+T +TNLEAA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++ Sbjct: 121 VGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLER 180 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 D A+ + I+ GL++M+R+R R S+ + + C C G G +++ ++ I R + Sbjct: 181 DHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILR 240 Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 Y A V + VV LL+++ + E E+ G +I + + + + + Sbjct: 241 EARAYQAVGYRVLANQRVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDV 296 >gi|126697030|ref|YP_001091916.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9301] gi|126544073|gb|ABO18315.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. MIT 9301] Length = 602 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 130/572 (22%), Positives = 240/572 (41%), Gaps = 10/572 (1%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180 ++ I + E I +A ++ + ++ + P + K+ + I E+++ +Q + Sbjct: 33 QIGDIFLGTVENVLPGIDAAFINIGESDKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE G+KG +T +S+ G+Y +L P +G ISRK N +N + L Sbjct: 93 LVQVIKEPTGSKGPRLTGSISIPGKYMILQP-YGQGVNISRK-INTETERNRLKALGVLI 150 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G++ RT + + D E +++ W+N+ +++ S P+LV + + + +R Sbjct: 151 KPPSTGLLFRTEAEKIKEELLIEDLEQIIQQWENILKVSEASHPPNLVKRDEDFSLKILR 210 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D + II+ + AKD++K + I+ + + Q Sbjct: 211 DHIKESTKSIIIDSKFSVARAKDYLKNYESDINIEFHDNNSSPHVLDEYKIKKTIQTALQ 270 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY+II TEAL IDVNSG TR T L TN EAA EI+RQ++LR++ Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDME +++ + + ++K D AR Q+ ++ GL+E++R+R ++ E Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-----TAHNIIVHTHSDVVLYLLNQK 535 K C+ C G G++ + + +S L+ + + NI +D ++N++ Sbjct: 391 GKKCSTCDGTGHVENILNQEISNLKIKNDENKFNQSDNLKSQNIYTSQSTDEQEKIINKE 450 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + L + V P E Sbjct: 451 LLNSKDLSKENSSYKKENDNDNLNQSNSKEKNTITVDLTNEEKIVFSQLGINPLIKLGKE 510 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + + + ++ E D + K + + + + + Sbjct: 511 YLTSNNFVRLKDSNKEKEKTLDKKTKSKQIKKSSKSGEEKI--QITIEDKANSKDNSTNK 568 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 I VI +E +D + + + Sbjct: 569 INEVIFTEEKDEIEATDDLKNARKKRRRSSAS 600 Score = 72.7 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ +L D+RV+EL G+I+L V V P + AAF+ Sbjct: 1 MSQQIII----AEQARIAALLTDDRVDELIV--AQGHYQIGDIFLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G +++GF+ ++ P Sbjct: 55 NIGESDKNGFIHVSDLGP 72 >gi|226311431|ref|YP_002771325.1| ribonuclease G [Brevibacillus brevis NBRC 100599] gi|226094379|dbj|BAH42821.1| putative ribonuclease G [Brevibacillus brevis NBRC 100599] Length = 491 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 113/401 (28%), Positives = 190/401 (47%), Gaps = 8/401 (1%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 + I E + Q +LVQ+ KE K +T +SL GRY V +P + + Sbjct: 82 KPNIAERVHVGQKVLVQVSKEAMEMKAPKITMRISLQGRYLVYLPTEESISLSRKISDDT 141 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 ++ + V G G ILRT A + + R+ YL W ++R A + Sbjct: 142 KRKR--LQQVISSTVEQGEGCILRTEAAEAEEQTLIRELTYLRNRWQDMRRTAEGLRSTG 199 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++++ LI+ A+RD + E++V G +++ K + P +R Y+ P+F Sbjct: 200 RIFQDAELIEVALRDGLANGMDELLVEGAATHQQVKAALAAFAPEVQEKLRWYQGKQPLF 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE--DTALQTNL 404 G+E +L +V L S G ++I++TEA+ IDVN+G T + TNL Sbjct: 260 DYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMTVIDVNTGSFTGAGGQQREQAVTATNL 319 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EA EIARQLRLRD+ G++++DFIDM+E+ N V +LK+ L KD V +++ GL Sbjct: 320 EAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKERVISRLKQELAKDPVPSTVLGMTSLGL 379 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R+R+S++E T+ C C G G + + + V A +V Sbjct: 380 VEMTRKRVRASLMERLTEPCEACAGRGRVWRVDELLRRLYVEVTALAKSQDAEAALVDMP 439 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ + ++A V + + ++ F I Sbjct: 440 PRLLDMIEAWEKAEAVTWPVHVYKRLV----PSMSPDEFRI 476 Score = 72.7 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%) Query: 8 DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHG 67 ++ R+ + + +++E + G+IY ++ V+P +Q+AFVD G ++ Sbjct: 6 ISTQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDIGTGQNA 65 Query: 68 FLPFLE 73 +L + Sbjct: 66 YLYVDD 71 >gi|213693152|ref|YP_002323738.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524613|gb|ACJ53360.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459332|dbj|BAJ69953.1| ribonuclease G [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 977 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 498 DRLMVVREKEQHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 557 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 558 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 617 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 618 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 674 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 675 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYGRI 734 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 735 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 794 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 795 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 854 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 855 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 914 Query: 497 SSVA 500 Sbjct: 915 QPTV 918 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 510 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 569 Query: 75 HPD 77 + D Sbjct: 570 NWD 572 >gi|23465843|ref|NP_696446.1| ribonuclease G [Bifidobacterium longum NCC2705] gi|23326541|gb|AAN25082.1| ribonuclease G [Bifidobacterium longum NCC2705] Length = 1003 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 524 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 583 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 584 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 643 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 644 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 700 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 701 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 760 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 761 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 820 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 821 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 880 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 881 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 940 Query: 497 SSVA 500 Sbjct: 941 QPTV 944 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 536 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 595 Query: 75 HPD 77 + D Sbjct: 596 NWD 598 >gi|119025257|ref|YP_909102.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703] gi|118764841|dbj|BAF39020.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703] Length = 937 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 121/424 (28%), Positives = 216/424 (50%), Gaps = 13/424 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + L+ + +V +D + + + + V I + S+ +A D+ Sbjct: 453 ERLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 512 Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 513 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 572 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + + + P MGVI+RTA ++ I +D Sbjct: 573 RFLVLVPSGGMTGVSRKL---SERERARLKNIVSKIAPKDMGVIIRTAAEGASEEAITKD 629 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G++ Y Sbjct: 630 LENLVRQWERITAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERI 689 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 690 EEYLDTMAPDLKDKLEKWDPAEHDGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 749 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEAAEEIARQLRLRD+ G++++DF+DM N Sbjct: 750 AMTTIDVNTGRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANR 809 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 810 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 869 Query: 497 SSVA 500 Sbjct: 870 EPTV 873 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 465 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 524 Query: 75 HPD 77 + D Sbjct: 525 NWD 527 >gi|255325498|ref|ZP_05366600.1| ribonuclease E [Corynebacterium tuberculostearicum SK141] gi|255297436|gb|EET76751.1| ribonuclease E [Corynebacterium tuberculostearicum SK141] Length = 1290 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 138/580 (23%), Positives = 235/580 (40%), Gaps = 26/580 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G K R ++ +K+ +LVQ+ K+ G+KGA +TT +SLAGRY V +P Sbjct: 480 GEIDWRKTKLHGRARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPG- 538 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ + G VP G I+RTA + + I D L W+ Sbjct: 539 GRSAGISRKLPAPERKR--LKDILGRVVPGDGGAIIRTAAENVPEEAIATDVNRLHSRWE 596 Query: 274 N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + +E + P +YEE N++ + +RDL+ +D +E+IV G++ + + ++ + Sbjct: 597 DIVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSM 656 Query: 329 MPSYARIVRQYEDP----HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P A V +Y F I+ QL +V LPS G ++I++TEA+ IDV Sbjct: 657 APDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 716 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 717 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 776 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS----QSSV 499 KE+L +DR R QV +++ GL++M+R+R+ + ++E+ + C C G G I + Sbjct: 777 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECECCNGRGIIIHQYPVDEAE 836 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG--IE 557 + + + H V + + + Sbjct: 837 DDQRSKHSGRKSKAHKKQHHDPQQHPTAVAMH----KHELDDAPESSSKPKRFKKTQAPV 892 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQ 616 + + S +L + V D + P+ E D Sbjct: 893 YGTESEEAARESAKTSLEDLVANVVVDERGPAQSHAGSEEHSGDHDRSKERGRGRGRRRA 952 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 E + + + + + + D P Sbjct: 953 RKRTQTEVSDIEAIAYAAADNAAESDEVQEFNSYVPDADTD--ADSGAVAQAHPGAAARS 1010 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + + ++ + KT Sbjct: 1011 KRGKKPRRATRRSKVTREAVGGEQKAPEKKAAPEKATGKT 1050 Score = 87.3 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 37/60 (61%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V VL D+ + E +E + + GNIYL +V V PS++AAFVD G R+G L EI Sbjct: 423 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 482 >gi|123966914|ref|YP_001011995.1| ribonuclease E/G [Prochlorococcus marinus str. MIT 9515] gi|123201280|gb|ABM72888.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. MIT 9515] Length = 608 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 127/525 (24%), Positives = 227/525 (43%), Gaps = 14/525 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ +Q +LVQ++KE GNKG +T +SL G+Y +L P +G ISRK N Sbjct: 82 ITELLEPKQKVLVQVMKEPTGNKGPRLTGNISLPGKYLILQPF-GQGVNISRK-INTDTE 139 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 ++ L P G++ RT + + D E L++ WD V +++ P+L+ Sbjct: 140 RSRLRALGVLIKPPSTGLLFRTEAEKIKEELLIEDLENLIQQWDQVLKISETCQPPNLIN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + + +RD S++++ + +AKDF+ + ++ + I + Sbjct: 200 RDEDFSLKILRDCIKASTSKVVIDNKVALEKAKDFLINNDSNVDLVLHNNDINEHILEKY 259 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 I + + V LPS GY+II TEAL IDVNSG TR T L TN EAA E Sbjct: 260 QINKTIQKALEPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVE 319 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I+RQ++LR++ G++V+DFIDME +++ + ++ ++K D AR Q+ ++ GL+E++R Sbjct: 320 ISRQMKLRNIGGVLVIDFIDMESRRDQFQLLEQFTLAIKDDSARPQIAELTELGLVELTR 379 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R ++ E K C C G G+I+S + S + + N T + Sbjct: 380 KRQGQNIYELFGKKCNACNGLGHIKSLPNYQNSNS-ETNHSAKKSSRLNNTKFTDLEPSE 438 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 + NQ++ E ++ +K K + H Sbjct: 439 VIENQEKIVKKEL-----------PNSKILNKDDDPAKQKENDNEIVNTHNSKEKKVITV 487 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 +E + + + + + +N + ++ ++ + A Sbjct: 488 ELSEVEKIVYSQLGINPLIKLGKQYLTNNHLVRLENSNNNEKELSLQKNKKAKTKVSNKK 547 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 + SS N I+ S E +I + + L E Sbjct: 548 TNKKSSTSNSIEKSEVEVNESKEINHESKLPKITTANEEVEITDE 592 Score = 72.3 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ +L D+RV+EL + G+I+L V V P + AAF+ Sbjct: 1 MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 G ++GF+ ++ P Sbjct: 55 HIGESEKNGFIHVSDLGP 72 >gi|291516541|emb|CBK70157.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. longum F8] Length = 1011 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 532 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 591 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 592 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 651 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 652 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 708 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 709 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 768 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 769 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 828 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 829 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 888 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 889 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 948 Query: 497 SSVA 500 Sbjct: 949 QPTV 952 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 544 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 603 Query: 75 HPD 77 + D Sbjct: 604 NWD 606 >gi|312133798|ref|YP_004001137.1| cafa [Bifidobacterium longum subsp. longum BBMN68] gi|311773082|gb|ADQ02570.1| CafA [Bifidobacterium longum subsp. longum BBMN68] Length = 1022 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 899 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 900 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 959 Query: 497 SSVA 500 Sbjct: 960 QPTV 963 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614 Query: 75 HPD 77 + D Sbjct: 615 NWD 617 >gi|326391428|ref|ZP_08212964.1| ribonuclease, Rne/Rng family [Thermoanaerobacter ethanolicus JW 200] gi|325992507|gb|EGD50963.1| ribonuclease, Rne/Rng family [Thermoanaerobacter ethanolicus JW 200] Length = 477 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 126/400 (31%), Positives = 215/400 (53%), Gaps = 7/400 (1%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I +V+K Q ++VQ+ KE G K VT +SL G+Y VLMPN R Sbjct: 83 PKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYVGISHRIEEEG 142 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 ++ + P GMG+I+RTA T+ +++ D + L+RL++ +++ N+ P Sbjct: 143 ERKR--LQEIVKELKPDGMGIIVRTAALEATEQQMREDLDELIRLYEKIQKDFQNAPLPS 200 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y+E + + +RDL ++ EI+V+ ++ Y K ++K + + + + Sbjct: 201 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLM 257 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G + Q++ L + +V L S G+VII+QTEAL IDVN+G+ + +E+T +TNLEA Sbjct: 258 GIYGADFQVEKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 317 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEIA QL+LRD+ G+I++DFIDM+ + + + + K+ L+KDR + V + GL+E Sbjct: 318 AEEIALQLKLRDIGGIIIIDFIDMKNENFRKDLLEFFKKELQKDRTKCSVLGYTQLGLVE 377 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R+RS V + C C+G G + S + + ++E L I + + Sbjct: 378 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYKRLRNNIERVLRHIKVRKIYIKGNDK 437 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 VV + ++ + Y+ +F V + VV+ F IE Sbjct: 438 VVK--IAAEKEIVKFYKEKFNVDLEVVVDNNKKYGHFEIE 475 Score = 93.5 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++D +++ +L + +++E E K I GNIY K+ V +QAAFVD G Sbjct: 5 KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63 Query: 63 GNRHGFLPFLE 73 ++ FL F + Sbjct: 64 IGKNAFL-FSD 73 >gi|296454938|ref|YP_003662082.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. longum JDM301] gi|296184370|gb|ADH01252.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. longum JDM301] Length = 1051 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 572 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 631 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 632 QSRNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 691 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 692 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 748 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 749 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 808 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 809 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 868 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 869 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 928 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 929 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 988 Query: 497 SSVA 500 Sbjct: 989 QPTV 992 Score = 95.4 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 38/63 (60%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G +R+G L E+ Sbjct: 584 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQSRNGVLYAGEV 643 Query: 75 HPD 77 + D Sbjct: 644 NWD 646 >gi|322690004|ref|YP_004209738.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F] gi|320461340|dbj|BAJ71960.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F] Length = 1014 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 535 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 594 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 595 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 654 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 655 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 711 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 712 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 771 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 772 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 831 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 832 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 891 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 892 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 951 Query: 497 SSVA 500 Sbjct: 952 QPTV 955 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 547 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 606 Query: 75 HPD 77 + D Sbjct: 607 NWD 609 >gi|328754410|gb|EGF68026.1| ribonuclease, Rne/Rng family [Propionibacterium acnes HL087PA1] Length = 339 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 171/316 (54%), Gaps = 9/316 (2%) Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 GA + +++S+ GR+ V P ISRK+ + ++ K +P+ VI+RTA Sbjct: 1 GARLPSHISVPGRFVVYSPG-GHLSGISRKLADSERKRLKK--IVENNIPSDASVIVRTA 57 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 T+ ++ RD L W+ + NS AP ++Y E +L R IRDL+ D SE+++ Sbjct: 58 AEGATEEDLVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVI 117 Query: 313 SGEKGYREAKDFMKLLMPSYARIV-----RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 +G G +A D +K + A + F I+ Q+ + +V LPS Sbjct: 118 AGNGGPDDAYDTIKAYVDHVAPEMTSRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPS 177 Query: 368 RGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 G ++I++TEA+ IDVN+G+ T +E T NLEAAEEI RQLRLRD+ G+IV+D Sbjct: 178 GGSLVIDRTEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVID 237 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDM N + ++L E L +DR R QV +++ GL++M+R++I + + E+ T+ C Sbjct: 238 FIDMVLPTNRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEA 297 Query: 487 CKGAGYIRSQSSVALS 502 C G GY R V Sbjct: 298 CGGRGYRRFDKPVDSQ 313 >gi|239620892|ref|ZP_04663923.1| ribonuclease G [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516153|gb|EEQ56020.1| ribonuclease G [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1023 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 544 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 603 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 604 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 663 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 664 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 720 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 721 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 780 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 781 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 840 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 841 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 900 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 901 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 960 Query: 497 SSVA 500 Sbjct: 961 QPTV 964 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 556 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 615 Query: 75 HPD 77 + D Sbjct: 616 NWD 618 >gi|189440477|ref|YP_001955558.1| ribonuclese G and E [Bifidobacterium longum DJO10A] gi|189428912|gb|ACD99060.1| Ribonuclese G and E [Bifidobacterium longum DJO10A] Length = 1022 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 899 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 900 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 959 Query: 497 SSVA 500 Sbjct: 960 QPTV 963 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614 Query: 75 HPD 77 + D Sbjct: 615 NWD 617 >gi|322691938|ref|YP_004221508.1| ribonuclease G [Bifidobacterium longum subsp. longum JCM 1217] gi|320456794|dbj|BAJ67416.1| ribonuclease G [Bifidobacterium longum subsp. longum JCM 1217] Length = 1022 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 899 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 900 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 959 Query: 497 SSVA 500 Sbjct: 960 QPTV 963 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614 Query: 75 HPD 77 + D Sbjct: 615 NWD 617 >gi|317482959|ref|ZP_07941963.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|316915566|gb|EFV36984.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA] Length = 1003 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 116/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 524 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 583 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 584 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 643 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 644 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 700 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 701 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 760 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 761 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 820 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 821 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 880 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 881 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 940 Query: 497 SSVA 500 Sbjct: 941 QPTV 944 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 536 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 595 Query: 75 HPD 77 + D Sbjct: 596 NWD 598 >gi|300914782|ref|ZP_07132098.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X561] gi|307723984|ref|YP_003903735.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X513] gi|320116264|ref|YP_004186423.1| ribonuclease, Rne/Rng family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|300889717|gb|EFK84863.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X561] gi|307581045|gb|ADN54444.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X513] gi|319929355|gb|ADV80040.1| ribonuclease, Rne/Rng family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 477 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 130/400 (32%), Positives = 215/400 (53%), Gaps = 7/400 (1%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I +V+K Q ++VQ+ KE G K VT +SL G+Y VLMPN R Sbjct: 83 PKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYIGISHRIEEEV 142 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 ++ + P G+G+I+RTA T+ +I+ D E L+RL++ +++ N+ P Sbjct: 143 ERKR--LQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELIRLYEKIQKDFQNAPLPS 200 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y+E + + +RDL ++ EI+V+ ++ Y K ++K + + + + Sbjct: 201 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLL 257 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G + Q+D L + +V L S G+VII+QTEAL IDVN+G+ + +E+T +TNLEA Sbjct: 258 GIYGADFQVDKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 317 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEIA QL+LRD+ G+I++DFIDM+ + R + + K L+KDR + V + GL+E Sbjct: 318 AEEIALQLKLRDIGGIIIIDFIDMKNENFKRDLLEFFKRELQKDRTKCTVLGYTQLGLVE 377 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R+RS V + C C+G G + S + + ++E L A I + + Sbjct: 378 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYRRLRNNIERVLRHVNARKIYIKGNDK 437 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 VV + ++ I Y+ +F V + +V+ F IE Sbjct: 438 VVK--IASEKGIIKFYKEKFNVDLELVVDNNKKYGHFEIE 475 Score = 98.5 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 11/258 (4%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++D +++ +L + +++E E K I GNIY K+ V +QAAFVD G Sbjct: 5 KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI----AQTDSEAVADDVTHGDVTIPNDH 118 ++ FL F ++ +P S Q L I ++ VT Sbjct: 64 IGKNAFLFFDDVLFQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYV 123 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 L S EEE ++V ++ G + I+E ++ Sbjct: 124 VLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELI 183 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 L +I K+ + ++ + + E + + + +N+K + Sbjct: 184 RLYEKIQKDFQNAPLPSLI--YKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKN 241 Query: 239 LEVPAGMGVILRTAGASR 256 + G I T Sbjct: 242 V----GKENISVTYEEGD 255 >gi|167037847|ref|YP_001665425.1| ribonuclease [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040744|ref|YP_001663729.1| ribonuclease [Thermoanaerobacter sp. X514] gi|166854984|gb|ABY93393.1| ribonuclease, Rne/Rng family [Thermoanaerobacter sp. X514] gi|166856681|gb|ABY95089.1| ribonuclease, Rne/Rng family [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 474 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 130/400 (32%), Positives = 215/400 (53%), Gaps = 7/400 (1%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I +V+K Q ++VQ+ KE G K VT +SL G+Y VLMPN R Sbjct: 80 PKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYIGISHRIEEEV 139 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 ++ + P G+G+I+RTA T+ +I+ D E L+RL++ +++ N+ P Sbjct: 140 ERKR--LQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELIRLYEKIQKDFQNAPLPS 197 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y+E + + +RDL ++ EI+V+ ++ Y K ++K + + + + Sbjct: 198 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLL 254 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G + Q+D L + +V L S G+VII+QTEAL IDVN+G+ + +E+T +TNLEA Sbjct: 255 GIYGADFQVDKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 314 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEIA QL+LRD+ G+I++DFIDM+ + R + + K L+KDR + V + GL+E Sbjct: 315 AEEIALQLKLRDIGGIIIIDFIDMKNENFKRDLLEFFKRELQKDRTKCTVLGYTQLGLVE 374 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R+RS V + C C+G G + S + + ++E L A I + + Sbjct: 375 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYRRLRNNIERVLRHVNARKIYIKGNDK 434 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 VV + ++ I Y+ +F V + +V+ F IE Sbjct: 435 VVK--IASEKGIIKFYKEKFNVDLELVVDNNKKYGHFEIE 472 Score = 98.5 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 11/258 (4%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++D +++ +L + +++E E K I GNIY K+ V +QAAFVD G Sbjct: 2 KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 60 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI----AQTDSEAVADDVTHGDVTIPNDH 118 ++ FL F ++ +P S Q L I ++ VT Sbjct: 61 IGKNAFLFFDDVLFQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYV 120 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 L S EEE ++V ++ G + I+E ++ Sbjct: 121 VLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELI 180 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 L +I K+ + ++ + + E + + + +N+K + Sbjct: 181 RLYEKIQKDFQNAPLPSLI--YKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKN 238 Query: 239 LEVPAGMGVILRTAGASR 256 + G I T Sbjct: 239 V----GKENISVTYEEGD 252 >gi|157414102|ref|YP_001484968.1| ribonuclease G and E [Prochlorococcus marinus str. MIT 9215] gi|157388677|gb|ABV51382.1| Ribonuclease G and E [Prochlorococcus marinus str. MIT 9215] Length = 606 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 133/576 (23%), Positives = 238/576 (41%), Gaps = 11/576 (1%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180 ++ I + E I +A ++ + ++ + P + K+ + I E+++ +Q + Sbjct: 33 QIGDIFLGTVENVLPGIDAAFINIGESEKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE G+KG +T +S+ G+Y VL P +G ISRK N ++ + L Sbjct: 93 LVQVIKEPTGSKGPRLTGSISIPGKYLVLQP-YGQGVNISRK-INTETERSRLKALGVLI 150 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 PA G++ RT + + D E+L++ W+NV +++ S P+LV + + + +R Sbjct: 151 KPASTGLLFRTEAEKIKEELLIEDLEHLIQQWENVLKVSEVSNPPNLVKRDDDFSLKILR 210 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D II+ + AKDF+ IF + I+ + Q Sbjct: 211 DHIKASTKSIIIDSKLSVARAKDFLINCESDIDITFHDNSLNQHIFEKYEIKKTIQKALQ 270 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY+II TEAL IDVNSG TR T L TN EAA EI+RQ++LR++ Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDME +++ + + ++K D AR Q+ ++ GL+E++R+R ++ E Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDFARPQIAQLTELGLVELTRKRQGQNIYELF 390 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY-----TAHNIIVHTHSDVVLYLLNQK 535 K + C +I + + +S L+ + +I +D +++++ Sbjct: 391 GKKSSKCDDTEHIENILNQEISNLKIKNVENKSNQSNDLKSIDIDASQSTDEQEKIMDKE 450 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + L + V P E Sbjct: 451 LLNFKDLSKENSSYKKENDNDNLIQSNLKEKNIITVDLTNEEKIVFSQLGINPLIKLGKE 510 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---RRRPATDHHDAGVVSD 652 + + + ++ E DN ++ + + + + D Sbjct: 511 YLTSNNFVRLKDSNKEKEKTLDNKKTKSKQIKKTSKPGEEKIQLKIEAKANSKDKSTNKI 570 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 S + + D D +TN + E Sbjct: 571 NESNEVIFSDKKDEIELSDVLTNARKKRRRSSASIE 606 Score = 75.4 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ +L D+RV+EL + G+I+L V V P + AAF+ Sbjct: 1 MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVSDLGP 72 >gi|28493441|ref|NP_787602.1| ribonuclease G [Tropheryma whipplei str. Twist] gi|28476482|gb|AAO44571.1| ribonuclease G [Tropheryma whipplei str. Twist] Length = 549 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 8/354 (2%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I+ ++ +LVQ+ K+ NKG VT LSLAGRY V P + +SR+I Sbjct: 143 KAQSIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLAGRYLVYAPGSG---GVSRRIAP 199 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + K + +E +I+RTA T ++ D + L + ++E + N+ AP Sbjct: 200 SERARLQKSLKAAVEDV--SSLIIRTAAVGATSEQLGNDAKMLCEAYRAIKEKSENATAP 257 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++Y E +L+ R +RD + D E+IV G + Y +++ + P V + + Sbjct: 258 SIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSYLQDVSPEMLGKVSK-SSEEDL 316 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNL 404 F I Q+D +V LPS G ++++ TEA+ IDVN+G+ + T NL Sbjct: 317 FDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVIDVNTGKFVGTSSSLEQTVTDNNL 376 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EA +EI RQ+RLRDL G++V+DFIDM ++N V +L E+L DR+R +V I++ GL Sbjct: 377 EAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNRLLEALSLDRSRHKVAEITSLGL 436 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 ++M+R+++ ++ E +++C C G G + + + + A + Sbjct: 437 VQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPNKPRARKKHRLRQVNKEASD 489 Score = 94.7 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML+ S + +V +L + + E + GNIY+ +V V P ++AAFVD G Sbjct: 68 MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127 Query: 65 RHGFLPFLE 73 R+ L E Sbjct: 128 RNAVLYSGE 136 >gi|28572447|ref|NP_789227.1| ribonuclease E [Tropheryma whipplei TW08/27] gi|28410579|emb|CAD66965.1| ribonuclease E [Tropheryma whipplei TW08/27] Length = 549 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 8/354 (2%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I+ ++ +LVQ+ K+ NKG VT LSLAGRY V P + +SR+I Sbjct: 143 KAQSIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLAGRYLVYAPGSG---GVSRRIAP 199 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + K + +E +I+RTA T ++ D + L + ++E + N+ AP Sbjct: 200 SERARLQKSLKAAVEDV--SSLIIRTAAVGATSEQLGNDAKMLCEAYRAIKEKSENATAP 257 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++Y E +L+ R +RD + D E+IV G + Y +++ + P V + + Sbjct: 258 SIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSYLQDVSPEMLGKVSK-SSEEDL 316 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNL 404 F I Q+D +V LPS G ++++ TEA+ IDVN+G+ + T NL Sbjct: 317 FDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVIDVNTGKFVGTSSSLEQTVTDNNL 376 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EA +EI RQ+RLRDL G++V+DFIDM ++N V +L E+L DR+R +V I++ GL Sbjct: 377 EAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNRLLEALSLDRSRHKVAEITSLGL 436 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 ++M+R+++ ++ E +++C C G G + + + + A + Sbjct: 437 VQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPNKPRARKKHRLRQVNKEASD 489 Score = 94.7 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML+ S + +V +L + + E + GNIY+ +V V P ++AAFVD G Sbjct: 68 MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127 Query: 65 RHGFLPFLE 73 R+ L E Sbjct: 128 RNAVLYSGE 136 >gi|33862057|ref|NP_893618.1| ribonuclease E/G [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634275|emb|CAE19960.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 605 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 132/571 (23%), Positives = 238/571 (41%), Gaps = 13/571 (2%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC-IQEVIKNRQIL 180 ++ I + E I +A D+ + ++ + P + K+ I E+++ +Q + Sbjct: 33 QIGDIFLGTVENVLPGIDAAFIDIGESEKNGFIHVSDLGPLRLKKGVVGITELLEPKQKV 92 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE GNKG +T +SL G+Y +L P +G ISRK N ++ L Sbjct: 93 LVQVMKEPTGNKGPRLTGNISLPGKYLILQP-YGQGVNISRK-INTETERSRLRALGVLI 150 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G++ RT + + D E+L++ WD V + + N+ P+L+ + N + +R Sbjct: 151 KPPSTGLLFRTEAEQIKEEFLIEDLEHLIQQWDQVLKNSENNHPPNLISRDENFSLKILR 210 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D S+I++ + +AKDF+ + + E I + I + Q Sbjct: 211 DYIKSSTSKIVIDNKIALEKAKDFLVNNDSNLDLVFHNNEINEHILEKYQINKTIQKALQ 270 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY+II TEAL IDVNSG TR T L TN EAA EI+RQ++LR++ Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAIEISRQMKLRNIG 330 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G++V+DFIDME +++ + + ++K D AR Q+ ++ GL+E++R+R ++ E Sbjct: 331 GVLVIDFIDMESRRDQFQLLEHFTLAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390 Query: 481 TKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV 540 + C C G G+ + L++ + + I SD L + + TI+ Sbjct: 391 STKCNNCNGLGHKEKLPNYKNISLKTNQ---NAKKSSKINDTKISDSTPIQLIENQETII 447 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 E + ++G+ + + Q Sbjct: 448 G-EELTKTKNTIKDDDHSN------KRGNDNELPNTNNRSEKKVITVELSNDEKIVYSQL 500 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 I + + E+ + + + + ++ + + Sbjct: 501 GINPLIKLGKEYLSSNHLVRLEDVKNKEKDDSEQNVKTNNKVTSKNTNKITSTFDSKEEV 560 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + + + P EN T+ D Sbjct: 561 EADYSKEVNPDKKLPKVTNENEVIETTDEMD 591 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ +L D++V+EL + G+I+L V V P + AAF+ Sbjct: 1 MSQQIVI----AEQARIAALLTDDQVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 D G ++GF+ ++ P Sbjct: 55 DIGESEKNGFIHVSDLGP 72 >gi|307266676|ref|ZP_07548204.1| ribonuclease, Rne/Rng family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918278|gb|EFN48524.1| ribonuclease, Rne/Rng family [Thermoanaerobacter wiegelii Rt8.B1] Length = 477 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 126/400 (31%), Positives = 215/400 (53%), Gaps = 7/400 (1%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 I +V+K Q ++VQ+ KE G K VT +SL G+Y VLMPN R Sbjct: 83 PKNITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYVGISHRIEEEG 142 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 ++ + P GMG+I+RTA T+ +++ D + L+RL++ +++ N+ P Sbjct: 143 ERKR--LQEIVKELKPDGMGIIVRTAALEATEQQMREDLDELIRLYEKIQKDFQNAPLPS 200 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y+E + + +RDL ++ EI+V+ ++ Y K ++K + + + + Sbjct: 201 LIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKNVGKENISVTY---EEGDLM 257 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 G + Q++ L + +V L S G+VII+QTEAL IDVN+G+ + +E+T +TNLEA Sbjct: 258 GIYGADFQVEKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNLEA 317 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEIA QL+LRD+ G+I++DFIDM+ + + + + K+ L+KDR + V + GL+E Sbjct: 318 AEEIALQLKLRDIGGIIIIDFIDMKNENFRKDLLEFFKKELQKDRTKCSVLGYTQLGLVE 377 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M+R+R+RS V + C C+G G + S + + ++E L I + + Sbjct: 378 MTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYKRLRNNIERVLRHIKVRKIYIKGNDK 437 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 VV + ++ + Y+ +F V + VV+ F IE Sbjct: 438 VVK--IAAEKEIVKFYKEKFNVDLEVVVDNNKKYGYFEIE 475 Score = 93.9 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++D +++ +L + +++E E K I GNIY K+ V +QAAFVD G Sbjct: 5 KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63 Query: 63 GNRHGFLPFLE 73 ++ FL F + Sbjct: 64 IGKNAFL-FSD 73 >gi|261749191|ref|YP_003256876.1| ribonuclease G [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497283|gb|ACX83733.1| ribonuclease G [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 507 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 196/409 (47%), Gaps = 16/409 (3%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 K + + I++++ Q +LVQI KE NKG +T L + GR VL+P + K +IS+K Sbjct: 94 KKEDRSSIEKILYPGQKILVQISKESISNKGPKLTAKLCIPGRNLVLIPFSEK-ISISKK 152 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 I N ++ L + + P G+I+RTA S+ + K++ +L + W N+ + Sbjct: 153 IKNTKEKSRLISCIKKI-QPKEFGIIIRTAAYSKKEQVFKKELFFLRKKWKNILSNIIKI 211 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 ++ E + +RD + D I + +E ++ L+ P I++ Y Sbjct: 212 PPIRVL-SESSKTSCLLRDTFNDDFKSIYCNNRFLCQEIHSYLSLIAPEKTSIIKHYRGD 270 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG------RSTREHCIE 396 PIF + GIE Q+ + V L + Y++I TEAL IDVNSG ++ E Sbjct: 271 IPIFEKYGIEKQIQTSLGKNVPLANGAYLVIEHTEALHVIDVNSGMINHIKKNCTESERI 330 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 DT L+ NL AA EIARQLRLRD+ G+IVVDFIDM E + + + LKE +K DRA+ Q+ Sbjct: 331 DTILKVNLLAATEIARQLRLRDMGGIIVVDFIDMSEPYQRKKLYEHLKEKMKNDRAKHQI 390 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 + FGL++ +R R+R + + S + +E + Sbjct: 391 LPPNEFGLVQFTRHRVRPELKANHHDKKPQ-------ESPIVYIHHLEFILETLVKDKFH 443 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 I +H H+ V YL + ++ ++ I ++ + I Sbjct: 444 KGIQLHIHTFVAAYLKKGFPSIQHKWLFKYKKWIKIIPRDSFKYTEYKI 492 >gi|237755665|ref|ZP_04584276.1| ribonuclease G [Sulfurihydrogenibium yellowstonense SS-5] gi|237692177|gb|EEP61174.1| ribonuclease G [Sulfurihydrogenibium yellowstonense SS-5] Length = 470 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 112/402 (27%), Positives = 196/402 (48%), Gaps = 12/402 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 + + +LVQ+ + KGA ++ +SL G+Y VL+P + +IS K N +R Sbjct: 77 VCKNTDKGSSILVQVKRSPVSTKGAKLSCKISLPGKYLVLLPQSKGKVSISSKYENNDER 136 Query: 230 KNLKEIARGLEV---PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +KE + L G+I+RTA I DF++L+ LW+ +++ AP Sbjct: 137 NEIKERIKNLLHKINQENYGLIIRTAAKDAPDEAILEDFKFLIELWNQIQKDYNKKKAPS 196 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++YEE +RD I K + + ++ + +F Sbjct: 197 IIYEEPFKAFAILRDYAGSFSEIISDDVSILKMIKKFVSENFPNANIKMTPYRKRKESLF 256 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + ++ ++ + L S Y++I +TEALV IDVNSG ++ +E+TA + NLEA Sbjct: 257 YEYELDKLINKILSPYAYLKSGSYLVIQETEALVVIDVNSGSCHKQKNLEETAFRINLEA 316 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 EI RQ+RLRDL+G++V+DFIDM +++ + ++LKE KKD+ V++ ++ GLLE Sbjct: 317 IPEIVRQIRLRDLSGIVVIDFIDMVNQEHKEVIVERLKEEFKKDKRPVKIKGLTQLGLLE 376 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 +SR+++ S+++ + C +C G GYI+SQ V + +++ + II S Sbjct: 377 LSRKKLEESLIKQLSDYCQHCYGRGYIKSQDVVMFELEKTINKLKPFAKMKIIINPKLSR 436 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 V LL + + + ++ F +EK Sbjct: 437 AVDSLLENLKLK---------ELVEIEYNNKMQLDKFEVEKV 469 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K++I ++ T ++L +N E E + G+IY KV R +++A FVD Sbjct: 1 MDRKLII-TKGIKNTFYLILENNIPVEFKIEDIEISKQTGSIYKGKVLRYSHAMEAFFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G ++ FLP ++ Sbjct: 60 IGEDKEAFLPKKDV 73 >gi|78779977|ref|YP_398089.1| ribonuclease [Prochlorococcus marinus str. MIT 9312] gi|78713476|gb|ABB50653.1| ribonuclease, Rne/Rng family [Prochlorococcus marinus str. MIT 9312] Length = 605 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 118/424 (27%), Positives = 205/424 (48%), Gaps = 6/424 (1%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR-QYCIQEVIKNRQIL 180 ++ I + E I +A ++ + ++ + P + K+ + I E+++ +Q + Sbjct: 33 QIGDIFLGTVENVLPGIDAAFINIGESDKNGFIHVSDLGPLRLKKGTFGITELLEPKQKV 92 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 LVQ++KE G+KG +T +S+ G+Y +L P +G ISRK N ++ + L Sbjct: 93 LVQVIKEPTGSKGPRLTGNISIPGKYIILQP-YGQGVNISRK-INTETERSRLKALGVLI 150 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 P G++ RT + + D E L++ W+N+ +++ S P+LV + + + +R Sbjct: 151 KPPSTGLVFRTEAEKIKEELLIDDLEKLIQQWENILKISEASNPPNLVKRDDDFSLKILR 210 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D II+ + AKDF+ + I + I+ + Q Sbjct: 211 DHIKSSTKSIIIDSKFSVERAKDFLINYESNIGIEFHDNNLNQNILEKYEIKKTIQKALQ 270 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V LPS GY+II TEAL IDVNSG TR T L TN EAA EI+RQ++LR++ Sbjct: 271 PRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIG 330 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+IVVDFIDME +++ + + ++K D AR Q+ ++ GL+E++R+R ++ E Sbjct: 331 GVIVVDFIDMESRRDQFQLLEHFTSAIKDDSARPQIAQLTELGLVELTRKRQGQNIYELF 390 Query: 481 TKVCTYCKGAGY---IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 K C+ C G G+ I + + L I E+ + + T ++ Sbjct: 391 GKKCSICNGTGHVENILNNENPNLKIKNIDEKSNQSNIIKPLDIDTSKSAENQEKIIEKE 450 Query: 538 TIVE 541 + + Sbjct: 451 LLNQ 454 Score = 75.0 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ +L+D+RV+EL + G+I+L V V P + AAF+ Sbjct: 1 MSQQIII----AEQARIAALLKDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G +++GF+ ++ P Sbjct: 55 NIGESDKNGFIHVSDLGP 72 >gi|283455282|ref|YP_003359846.1| ribonuclease G [Bifidobacterium dentium Bd1] gi|283101916|gb|ADB09022.1| rne Ribonuclease G [Bifidobacterium dentium Bd1] Length = 926 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + + Sbjct: 446 DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 505 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 506 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 565 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 566 RFLVLVPSGGMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAITKD 622 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D ++IV GE+ Y Sbjct: 623 LESLVRQWERISAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRI 682 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 683 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 742 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++DF+DM N Sbjct: 743 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 802 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 803 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 862 Query: 497 SSVA 500 Sbjct: 863 EPTV 866 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 458 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 517 Query: 75 HPD 77 + D Sbjct: 518 NWD 520 >gi|288818732|ref|YP_003433080.1| ribonuclease G and E [Hydrogenobacter thermophilus TK-6] gi|288788132|dbj|BAI69879.1| ribonuclease G and E [Hydrogenobacter thermophilus TK-6] gi|308752319|gb|ADO45802.1| ribonuclease, Rne/Rng family [Hydrogenobacter thermophilus TK-6] Length = 466 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 113/413 (27%), Positives = 193/413 (46%), Gaps = 13/413 (3%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + + + K+ + ++ + +LVQ+V+E G KGA +T+ + L G+Y + +PN Sbjct: 63 EKEAYLPIKQNCKKNGEEIKPVRVGEEVLVQVVREPVGEKGAKLTSRIRLVGKYLIYLPN 122 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 + + SR +R I GVI R + ++ EI +D + L RLW Sbjct: 123 ANDVKFSSRLEEEDRERLKAIAIEVLPRYGFSCGVIFRRHASKASEEEIIKDIDSLKRLW 182 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + P L+ EE + I+D + ++ E++V + + F++ PS Sbjct: 183 LKILKKFSAQKKPGLLLEEYPNYIKMIKDHW-YELGEMVVDNPYVWNDIVSFLEEFEPSL 241 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + V +D R I + V L GY++I +TEA+ IDVNSG Sbjct: 242 VKKVVYVKDVSAYINRYRIHDTFRKMLSKYVWLRGGGYIVIEETEAMTVIDVNSGEP-YG 300 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 E+ AL TNLEAA+EIA+ + LRD+ G+IV+DFIDM+ ++N V + L+ES ++ Sbjct: 301 ESHEENALNTNLEAAKEIAKHIMLRDIGGIIVIDFIDMKRQENRDLVIRTLQESFGEEAC 360 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 VQ+ + GLLEM+R++ SV T+ C CKG G +R +S +A + + + Sbjct: 361 NVQIYGFTRLGLLEMARKKSGESVSSLLTESCPLCKGRGKVRGKSLLAFELEKDLRRESH 420 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 I +H + + E +N+V + + I Sbjct: 421 ----GVIDLHVNPQSADTVR-------SVIEKNGFKYVNMVEDANVEYNDYEI 462 >gi|309802884|ref|ZP_07696985.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022] gi|308220351|gb|EFO76662.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022] Length = 917 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 11/424 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + + Sbjct: 437 DRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 496 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 497 QARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 556 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 557 RFLVLVPSGGMTGVSRKL---SERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAITKD 613 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D ++IV GE+ Y Sbjct: 614 LESLVRQWERISAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRI 673 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 674 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE 733 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++DF+DM N Sbjct: 734 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANR 793 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 794 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD 853 Query: 497 SSVA 500 Sbjct: 854 EPTV 857 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 449 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 508 Query: 75 HPD 77 + D Sbjct: 509 NWD 511 >gi|289578060|ref|YP_003476687.1| ribonuclease, Rne/Rng family [Thermoanaerobacter italicus Ab9] gi|297544331|ref|YP_003676633.1| ribonuclease, Rne/Rng family [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527773|gb|ADD02125.1| ribonuclease, Rne/Rng family [Thermoanaerobacter italicus Ab9] gi|296842106|gb|ADH60622.1| ribonuclease, Rne/Rng family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 476 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 130/462 (28%), Positives = 231/462 (50%), Gaps = 9/462 (1%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 ++ + + I + + + +A D+ + Sbjct: 22 ENGKLKEYHPEKSDGKNILGNIYKGKIQNVLKGMQAAFVDIGIGKNAFLFFDDVFQHENL 81 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I +V+K Q ++VQ+ KE G K VT +SL G+Y VLMPN R Sbjct: 82 PKS--ITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYVVLMPNVDYLGISHR--I 137 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + P GMG+I+RTA T+ +++ D E L+ L++ +++ N+ Sbjct: 138 EKEEERKKLQDIAKKLKPEGMGLIVRTAALEATEQQMREDLEELIHLYEKIQKDFQNASL 197 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 P L+Y+E + + + ++DL ++I EI+V+ + Y K ++K + + + Sbjct: 198 PSLIYKEEDFVIKYLKDLLSEEIDEIVVNDKDEYENIKRYLKNVAKENISVTY---EEGD 254 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 + G++ Q++ L + +V L S G+VII+QTEAL IDVN+G+ + +E+T +TNL Sbjct: 255 LMGIYGVDFQVEKLLEKKVWLKSGGFVIIDQTEALTVIDVNTGKYVGKSSLEETIYKTNL 314 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAAEEIA QL+LR++ G+I++DFIDM+ + R++ + K+ L+KDR + V + GL Sbjct: 315 EAAEEIALQLKLRNIGGIIIIDFIDMKNENFKRNLLEFFKKELQKDRTKCTVLGYTQLGL 374 Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 +EM+R+R+RS V + C CKG G + S + + ++E L I + + Sbjct: 375 VEMTRKRVRSQVGSYLKEKCPTCKGEGVVYSTEYIYKRLRNNIERVLRHVNVQKIYIKGN 434 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 VV + ++ I Y+ +F V + +V+ F IE Sbjct: 435 DKVVK--IAAEKGIIKFYKEKFNVDLELVVDNNKEYGYFEIE 474 Score = 96.6 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++D +++ +L + +++E E K I GNIY K+ V +QAAFVD G Sbjct: 5 KRLILDIDE-NLSQIALLENGKLKEYHPEKSDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63 Query: 63 GNRHGFLPFLEI 74 ++ FL F ++ Sbjct: 64 IGKNAFLFFDDV 75 >gi|257468861|ref|ZP_05632955.1| ribonuclease [Fusobacterium ulcerans ATCC 49185] gi|317063111|ref|ZP_07927596.1| ribonuclease G and E [Fusobacterium ulcerans ATCC 49185] gi|313688787|gb|EFS25622.1| ribonuclease G and E [Fusobacterium ulcerans ATCC 49185] Length = 489 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 126/495 (25%), Positives = 237/495 (47%), Gaps = 18/495 (3%) Query: 74 IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133 I+ D +Q R A++++ + + E + +G + ++ A + Sbjct: 6 INIDEFQ----SRAAIIEDGKVVEILVEREEEGRINGSIYKGKVANVLPGMESAFVNIGL 61 Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193 E+ + V D++ + + I++++ ++VQI+ E RG KG Sbjct: 62 EKNGFL--------YVNDLREFEEKYLDGILNSSRPIEDILNVGDDVVVQILNEPRGTKG 113 Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253 A VTT+ ++ G+Y VLMPN + + E P MGVI+RTA Sbjct: 114 ARVTTHFTIPGKYLVLMPNNDHIAISKKIRDEEERERL--ENIFKEIKPENMGVIIRTAA 171 Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313 +++ +R+ EYL++ W+++ + + ++Y++ +I +RD++ DI E+IV Sbjct: 172 FGKSEFHFEREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVD 231 Query: 314 GEKGYREAKDFMKLLMPSYARIV---RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 E+ Y E D++ + + IF GI ++D V L GY Sbjct: 232 NEEVYWEVIDYINAFSEKTLKTKIKLYRDGKEKDIFDLYGINEEIDKALNEVVWLECGGY 291 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 ++I +TEAL+SIDVN+G++T +E+T + TN+EAA+EI RQLRLR+ G+I++DFIDM Sbjct: 292 LVIQKTEALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDM 351 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 +++ V + L++ L++DR + + ++ GL+EM+R+R + +VC +C G Sbjct: 352 RVEEDKIKVLEALEKHLQRDRIKNNIVHFTDLGLVEMTRKRAGKPLAYYFQEVCPHCNGT 411 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 G I+SQ ++ +++ ++ I V ++ I E+ +I Sbjct: 412 GKIKSQDALIHELMKEIKMCSEDKDISTIKVKLSKTLIESFKEIYFEIIKEFLKMKKKAI 471 Query: 551 NVVIGIELADKLFYI 565 + + + I Sbjct: 472 ELEVDTN-NSCQYEI 485 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+++I+ ++R ++ D +V E+ E E + +I G+IY KV V P +++AFV+ G Sbjct: 2 NQIVINIDE-FQSRAAIIEDGKVVEILVEREEEGRINGSIYKGKVANVLPGMESAFVNIG 60 Query: 63 GNRHGFLPFLEI 74 ++GFL ++ Sbjct: 61 LEKNGFLYVNDL 72 >gi|300933220|ref|ZP_07148476.1| ribonuclease E [Corynebacterium resistens DSM 45100] Length = 1210 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 134/568 (23%), Positives = 232/568 (40%), Gaps = 23/568 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G P + I + ++ +LVQ++K+ G+KGA ++ +S AGRY V P Sbjct: 471 GEMNWHSPHLHSKNRRIDQALRAGDQILVQVIKDPVGHKGARLSNRVSFAGRYLVYFP-E 529 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 ISRK+ P ++ + +P G I+RTA + + +I D L LW+ Sbjct: 530 GTTAGISRKLPEPERKR--LKEILANVIPGDGGAIIRTAAENVPEEQIGEDVARLHSLWE 587 Query: 274 NVRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 V + + + +YEE N++ + +RD++ +D E+IV G K ++ +D++ + Sbjct: 588 KVSKEENKARSRKGAKPITLYEEPNMLVKVVRDIFNEDFKELIVDGAKSWQVVRDYVARM 647 Query: 329 MPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P + ++ F ++ QL +V LPS GY+II+ TEA+ IDV Sbjct: 648 APDLQDRLTKWNPNKHEGEDVFAAMHLDEQLTKALSRKVWLPSGGYLIIDPTEAMTVIDV 707 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G +E+T Q NLEAAEEI RQ+RLRDL G+IVVDFIDM ++N V ++L Sbjct: 708 NTGSFVGAGGNLEETVTQNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLEENRDLVLRRL 767 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 E L +DR R +V +++ GL++M+R+R+ + +LE+ + VC C+G G I V Sbjct: 768 TEYLGRDRTRHKVSEVTSLGLVQMTRKRLGTGLLETFSTVCAECEGRGVIIHSDPVEQDF 827 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + + +T E Sbjct: 828 DEAPRRDHGGRKDRQQARRERATRENIRKGAAESTGDNAEH---------DDSGHGGSSH 878 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++ +P A +++ S + E Sbjct: 879 RGKRRAPGGAHGGHRDNEAGSARSERRRTAAHHESDRAGSARRQHDSSDQQSHGQDSPEN 938 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN-VIDDSFDMYMEPSDITNHNLLENG 682 + +R RRRR R ++ + +++ + + + Sbjct: 939 TKTTATRRVRRRRVVRSISEPRHQSENQSADEVLTHRRNENRKAHSDDRTQRRRGRQHDR 998 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSD 710 ++ S + E S +D Sbjct: 999 NSASIDDIAASALRTAKAEDPDEPSGAD 1026 Score = 83.9 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V V+ D + E SE ++ + GNIYL +V V S++AAFVD G R+ L E+ Sbjct: 414 TQVGVVEDGMLVEHFVTSETQQSMVGNIYLGRVQNVLSSMEAAFVDIGTGRNAVLYAGEM 473 Query: 75 HP 76 + Sbjct: 474 NW 475 >gi|254526459|ref|ZP_05138511.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. MIT 9202] gi|221537883|gb|EEE40336.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. MIT 9202] Length = 606 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 127/531 (23%), Positives = 216/531 (40%), Gaps = 10/531 (1%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I E+++ +Q +LVQ++KE G+KG +T +S+ G+Y VL P +G ISRK N Sbjct: 78 GTFGITELLEPKQKVLVQVIKEPTGSKGPRLTGSISIPGKYLVLQP-YGQGVNISRK-IN 135 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ + L PA G++ RT + + D E+L++ W+NV +++ S P Sbjct: 136 TETERSRLKALGVLIKPASTGLLFRTEAEKIKEELLIEDLEHLIQQWENVLKVSEVSNPP 195 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 +LV + + + +RD II+ + AKDF+ I Sbjct: 196 NLVKRDEDFSLKILRDHIKASTKSIIIDSKLSVARAKDFLINCESDIDITFHDNSLNQHI 255 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F + I+ + Q V LPS GY+II TEAL IDVNSG TR T L TN E Sbjct: 256 FEKYEIKKTIQKALQPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCE 315 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA EI+RQ++LR++ G+IVVDFIDME +++ + + ++K D AR Q+ ++ GL+ Sbjct: 316 AAVEISRQMKLRNIGGVIVVDFIDMESRRDQFQLLEHFTSAIKDDFARPQIAQLTELGLV 375 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGY---IRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 E++R+R ++ E K + C + I +Q L I + +I + Sbjct: 376 ELTRKRQGQNIYELFGKKSSKCDDTEHIENILNQEISNLKIKNVANKSNQSNNLKSIDID 435 Query: 523 THSDVVLYLLNQKRATI--VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 + + + L + V Sbjct: 436 ASQSTDEQEKIMDKELLNFKDLSKENSSYKKENDNDNLIQSNLKEKNIITVDLTNEEKIV 495 Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---R 637 P E + + +L ++ E DN ++ + + + Sbjct: 496 FSQLGINPLIKLGKEYLTSNNFVLLKDSNKEKEKPLDNKKTKSKQIKKTSKTGEEKIQLK 555 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + +D S + + + D +TN + E Sbjct: 556 IEEKANSNDKSTNKINESNEVIFTNKKDEIELSDALTNARKKRRRSSASIE 606 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ +++I E+ R+ +L D+RV+EL + G+I+L V V P + AAF+ Sbjct: 1 MSQQIII----AEQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFI 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVSDLGP 72 >gi|313207045|ref|YP_004046222.1| ribonuclease, rne/rng family [Riemerella anatipestifer DSM 15868] gi|312446361|gb|ADQ82716.1| ribonuclease, Rne/Rng family [Riemerella anatipestifer DSM 15868] gi|325335518|gb|ADZ11792.1| Ribonucleases G and E [Riemerella anatipestifer RA-GD] Length = 519 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 103/574 (17%), Positives = 214/574 (37%), Gaps = 63/574 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI ++ +++ ++ D R+ EL + + + G+I+L K+ ++ P+L AAFV+ Sbjct: 1 MKKELLI-SNEGGASKIALIEDGRLFELHEQEQESDFVVGDIFLGKIKKLAPNLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + ++ P Y + ++ + S Sbjct: 60 IGYDKDAFLHYQDLGPQY-----------------------LTYRKFLNETLSKRKNDSG 96 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + PI + + A +DVV + S + + + R ++ Sbjct: 97 LKNFPIEKALDKNGMVDSVLAKDDVVLLQVTKEPISTKGARISTQ------VSLTGRFLV 150 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L+ ++ +K + + G I R + L L Sbjct: 151 LIPFDQKVSVSKKIKDSAERERLRTLIESIKPEGFGVII-RTVAEGKKVAELHNGMNQLI 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 T + + ++ + N+ ++ ++ ++++ Sbjct: 210 QKW------ETCFKNIQRGKVPSKILSEEEKASAILRDNFNADFVSIICDDEDMVQ---- 259 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 ++ + + +F + +P + + I Sbjct: 260 -----EMKNYLEVIAPERKNIVEFYEHHIPLLEYYNVEKQLKQSFGKHVNI--------- 305 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI--EDTALQTNLEAAEEIARQLRLRD 418 Y++I TEAL IDVNSG + ++ A N AA EIARQLRLRD Sbjct: 306 ---PSSKGAYLVIEHTEALHVIDVNSGNNITAGSQANKEHAFNVNRMAATEIARQLRLRD 362 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM + ++ R + + LK +K+D+A+ ++ S FGL++++RQR+RS + Sbjct: 363 MGGIIVVDFIDMRDAEHRRELYEHLKNEMKRDKAKHKILPPSKFGLIQITRQRVRSETVI 422 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 T + G ++ V + L+Q + +H H V YL + Sbjct: 423 ETKEENPNKDGEILAPVVIVEKMT---EVLKGLMQKEKGRLYLHAHPFVEAYLTKGLMSI 479 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 ++ ++ + ++ + + + Sbjct: 480 QTKWYLKYKKWVTIIPRDSFKYLEYRVYNSQKQE 513 >gi|255534617|ref|YP_003094988.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Flavobacteriaceae bacterium 3519-10] gi|255340813|gb|ACU06926.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [Flavobacteriaceae bacterium 3519-10] Length = 519 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 133/504 (26%), Positives = 227/504 (45%), Gaps = 22/504 (4%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN-- 143 + ALL++ + + + D GD+ I L A S E+++ + + Sbjct: 15 KIALLEDGRLFELHEQEDKSDFVVGDLFIGKVKKLAPNLNAAFVSIGYEKDAFLHYQDLG 74 Query: 144 -----------DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 D VS + ++ + + I +V+ +++QI KE K Sbjct: 75 PQYLTYKKFLKDTVSKKQQTTSLKNFEIQPEINKNGLIDKVLAKDDSVILQITKEPISTK 134 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 G ++T +SL GR+ VL+P K +IS+KI + +R+ L+ + ++ G GVI+RT Sbjct: 135 GPRISTQISLTGRFLVLIPF-DKSVSISKKIESAEERERLRTLIESIKPE-GFGVIIRTV 192 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIV 312 + E+ D L++ WD + + P V E + +RD + D II Sbjct: 193 AEGKKVAELHNDMNQLVQKWDTAFKNLQKNKVPSRVLSEEDKASAILRDNFNSDFVSIIC 252 Query: 313 SGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS--RGY 370 E+ + K +++++ P IV+ Y+ P P+ +E QL V +PS Y Sbjct: 253 DDEQMVDDMKAYIEVIAPERKNIVQFYDKPVPLMEYYNVEKQLKQSFGKHVNIPSSKGAY 312 Query: 371 VIINQTEALVSIDVNSGRSTREHCI--EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 ++I TEAL IDVNSG + + AL N AA EIARQLRLRD+ G+IVVDFI Sbjct: 313 LVIEHTEALHVIDVNSGNNISSGNSASREHALTVNKMAATEIARQLRLRDMGGIIVVDFI 372 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488 DM + R + LK + +D+AR ++ S FGL++++RQR R + T + Sbjct: 373 DMISADHRRELYDHLKNEMSRDKARHKILPPSKFGLIQLTRQRTRPENIIETKEENP--N 430 Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 AG I + V + V ++Q I +H H V YL + +++ ++ Sbjct: 431 AAGEILAPIVVVERME-EVIRNIIQTEKGKIFLHAHPFVEAYLTKGFMSIQMKWYLKYKK 489 Query: 549 SINVVIGIELADKLFYIEKGSPVQ 572 + ++ + + + Sbjct: 490 WVTIIPRDSFKYLEYKLINAKKEE 513 >gi|124026647|ref|YP_001015762.1| ribonuclease E/G [Prochlorococcus marinus str. NATL1A] gi|123961715|gb|ABM76498.1| S1 RNA binding domain:Ribonuclease E and G [Prochlorococcus marinus str. NATL1A] Length = 640 Score = 194 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 128/558 (22%), Positives = 242/558 (43%), Gaps = 26/558 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T ++L GRY VL P +G ISR+I+ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNIALPGRYLVLQP-YGQGVNISRRISTESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G+++RT + + D E L++ W+ +++ + + P L+ Sbjct: 141 NRLRA-LGVLVKPPSTGLLIRTEAEDICEEFLIDDLENLLKQWELIQQASESCSPPILLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD ++++EI+V + K+F+ + + D I + Sbjct: 200 RDEDFIHRILRDHTGQNLTEIVVDNSEAIGRVKNFLGKDSNEL--TIELHNDSENILEKY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + ++ + V LPS GY+II TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVISSINEALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRETVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQL+LR++ G+I++DFIDM+ K++ + + ++ D AR Q+ +++ GL+E++R Sbjct: 318 IARQLKLRNIGGVIIIDFIDMDTKRDQLQLLEHFTSAINGDSARPQIASLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS--------------ILRSVEEYLLQYT 515 +R ++ E K +G GY+ S + ++ I + L + Sbjct: 378 KRQGQNIYELFGKTSPNSQGQGYLPSITIQDINPTTPSEAGVINATLISGEDIQSLQETN 437 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++ D+ L N++ + + + I+ ++ Sbjct: 438 NKKKRINKTRDIEANLSNEENKSSTDNSKAISTD-TITEDIQKESNN-----KRKETTII 491 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-- 633 N + + + + L K + + E++ +++ Sbjct: 492 NINMNQNEEIVYSLMGLDPILLLEKPPLSENYKVNIIRPGKKEAREEKNNIPEDNQQKIV 551 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + ++ D + + S+I+ +S + N L + N++ Sbjct: 552 DDSISKHQNNNKDIIRLKNKSNIEQKSTNSDVKESIEEENINVALDQETNELININHNSI 611 Query: 694 IPPVSTPEMESSNSSSDP 711 P +S + DP Sbjct: 612 SEKNELPSTDSQEVNEDP 629 Score = 73.5 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E R+ +L D R++EL G+I+L V V P + AAFV Sbjct: 1 MPQQIVI----AEHLRIAALLTDERIDELIV--AQGSYQIGDIFLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVNDLGP 72 >gi|239616948|ref|YP_002940270.1| ribonuclease, Rne/Rng family [Kosmotoga olearia TBF 19.5.1] gi|239505779|gb|ACR79266.1| ribonuclease, Rne/Rng family [Kosmotoga olearia TBF 19.5.1] Length = 481 Score = 193 bits (490), Expect = 7e-47, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 216/464 (46%), Gaps = 8/464 (1%) Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 ++ + +T + + + I ++ ++EV ++ + +VV ++ Sbjct: 1 MEITKKKRTQAIVFSSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSL 60 Query: 150 EDVK-GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 E + + ++ + +LVQ+ K+ G+KG +T +S+ GR V Sbjct: 61 EAAFVNIGIGKNGFLRFKDTRNNQKLEKGKKVLVQVKKDPIGSKGPQLTLKISIPGRCLV 120 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 MP SK IS+KIT+ + + + G+I RTA + ++ + E L Sbjct: 121 YMPF-SKHVGISKKITDQAE-RERLISIAKGIIENDEGIIFRTAANGVGEDTLREELENL 178 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 +W + E + P ++YEE +L++ +R+ +D+ EI+V E + + + Sbjct: 179 RTIWKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDLWHDVVAGISKF 238 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + IVR F GI ++ L+ V LP+ G + I++TEA+ IDVNS Sbjct: 239 KSGFKPIVRY--VEEDAFLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMTVIDVNSAS 296 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +T + + +L TNLEAA EIARQLRLR++ G+IV+DFIDM+ + + + V L E LK Sbjct: 297 NTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVISLLSEELK 356 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 KD+A + + GLLEM+R+R +++ C C+G G I S ++ ++ Sbjct: 357 KDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITYQRLVSDLQ 416 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 + V + ++ L + + + +F I V Sbjct: 417 RLFKDKKIKSATVQVYQNLSGILTPEVQK---QLSKQFKREIKV 457 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 +S +E R+ +L + +++E+ FE + GNIYL K+ V PSL+AAFV+ G ++GF Sbjct: 15 SSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIGIGKNGF 74 Query: 69 LPFLE 73 L F + Sbjct: 75 LRFKD 79 >gi|218674495|ref|ZP_03524164.1| probable ribonuclease protein [Rhizobium etli GR56] Length = 97 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 78/95 (82%), Positives = 85/95 (89%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI 95 YGGNRHGFL F EIHPDYYQIP +DRQALL+ Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAE 95 >gi|315022561|gb|EFT35588.1| ribonuclease G [Riemerella anatipestifer RA-YM] Length = 519 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 103/574 (17%), Positives = 214/574 (37%), Gaps = 63/574 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++LI ++ +++ ++ D R+ EL + + + G+I+L K+ ++ P+L AAFV+ Sbjct: 1 MKKELLI-SNEGGASKIALIEDGRLFELHEQEQESDFVVGDIFLGKIKKLAPNLNAAFVN 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL + ++ P Y + ++ + S Sbjct: 60 IGYDKDAFLHYQDLGPQY-----------------------LTYRKFLNETLSKRKNDSG 96 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + PI + + A +DVV + S + + + R ++ Sbjct: 97 LKNFPIEKALDKNGMVDSVLAKDDVVLLQVTKEPISTKGARISTQ------VSLTGRFLV 150 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 L+ ++ +K + + G I R + L L Sbjct: 151 LIPFDQKVSVSKKIKDSAERERLRTLIESIKPEGFGVII-RTVAEGKKVAELHNGMNQLI 209 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 T + + ++ + N+ ++ ++ ++++ Sbjct: 210 QKW------ETCFKNIQRGKVPSKILSEEEKASAILRDNFNADFVSIICDDEDMVQ---- 259 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 ++ + + +F + +P + + I Sbjct: 260 -----EMKNYLEVIAPERKNIVEFYEHHIPLLEYYNVEKQLKQSFGKHVNI--------- 305 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRS--TREHCIEDTALQTNLEAAEEIARQLRLRD 418 Y++I TEAL IDVNSG + ++ A N AA EIARQLRLRD Sbjct: 306 ---PSSKGAYLVIEHTEALHVIDVNSGNNITAETKANKEHAFNVNRMAATEIARQLRLRD 362 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM + ++ R + + LK +K+D+A+ ++ S FGL++++RQR+RS + Sbjct: 363 MGGIIVVDFIDMRDAEHRRELYEHLKNEMKRDKAKHKILPPSKFGLIQITRQRVRSETVI 422 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 T + G ++ V + L+Q + +H H V YL + Sbjct: 423 ETKEENPNKDGEILAPVVIVEKMT---EVLKGLMQKEKGRLYLHAHPFVEAYLTKGLMSI 479 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 ++ ++ + ++ + + + Sbjct: 480 QTKWYLKYKKWVTIIPRDSFKYLEYRVYNSQKQE 513 >gi|227488343|ref|ZP_03918659.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091705|gb|EEI27017.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 203/373 (54%), Gaps = 13/373 (3%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 R+ I + +K+ +LVQ+ K+ G+KGA +T +SLAGRY V +P Sbjct: 345 DIDWRQMGLGGRKRRIDQALKSGDQVLVQVSKDIVGHKGARLTMQISLAGRYLVYVP-RG 403 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 + ISRK+ P ++ LK I + G G I+RTA ++ EI D E L LW++ Sbjct: 404 RNAGISRKLPEPERKR-LKAILNDVIPNEG-GAIVRTAAEGVSEKEIAADVERLHSLWED 461 Query: 275 VRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + + A +YEE +++ R +RDL+ +D S ++V G++ Y D++ + Sbjct: 462 IAQRTEEEKASKGAKPVTMYEEPDVLVRVVRDLFNEDFSTLVVEGDRAYNTVSDYVNTVA 521 Query: 330 PSYA----RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 P A + + D +F + I+ QL +V LPS G +II++TEA+ IDVN Sbjct: 522 PDLAERVVKYEAENNDGKDVFEKYRIDEQLQKALGRKVWLPSGGTLIIDRTEAMTVIDVN 581 Query: 386 SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 +G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++LK Sbjct: 582 TGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENRDLVLRRLK 641 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 E+L +DR R QV +++ GL++M+R+++ + +LE+ C C G G I + V Sbjct: 642 EALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLLETFATTCEACDGRGIILHEDPVEQQEK 701 Query: 505 RSVEEYLLQYTAH 517 R V + + Sbjct: 702 RPVYGRNKKRRSK 714 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E S GNIYL +V V S++AAF+D G R+G L +I Sbjct: 287 TQIGVLEDEMLVEHFVTSNTAASQVGNIYLGRVQNVLDSMEAAFIDIGTGRNGVLYSADI 346 >gi|289178080|gb|ADC85326.1| Ribonuclease G [Bifidobacterium animalis subsp. lactis BB-12] Length = 1127 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 645 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 704 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 +SRK+++ + + P MGVI+RTA ++ I +D E L W Sbjct: 705 GMTG-VSRKLSDRERNR--LKSIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWA 761 Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++ + P L+ E ++ R +RD++ D +++IV G+ Y ++++ + P Sbjct: 762 EIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAP 821 Query: 331 SYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ +F R I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 822 DLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 881 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N V ++L E Sbjct: 882 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 941 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 942 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGFIVHDEPTI 996 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 588 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 647 Query: 75 HPD 77 + D Sbjct: 648 NWD 650 >gi|170289058|ref|YP_001739296.1| ribonuclease [Thermotoga sp. RQ2] gi|170176561|gb|ACB09613.1| ribonuclease, Rne/Rng family [Thermotoga sp. RQ2] Length = 459 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 115/393 (29%), Positives = 199/393 (50%), Gaps = 14/393 (3%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 + +++ + +K Q +LVQ+ K+ G KG VT + +A R+ V+ P K +S Sbjct: 59 NEAYRKTVLKGQEVKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPFK-KVIGVS 117 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 RKI + +R+ L+ IA L G+GVI+RTA + EI ++FE + W+ V + Sbjct: 118 RKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVLQKFR 177 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 S P L+YEE + +++ I++ I ++I + ++ + + + Sbjct: 178 RSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLET----LQKYLQNLPKKPEIEY 232 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 +F + + +L L V L S G ++I++TEAL IDVNS T E+ AL Sbjct: 233 VEGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELAL 292 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 +TN+EA EEI RQL LR++ G++V+DFI ++ K+ + + KE K+D R+++ + Sbjct: 293 KTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFT 352 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNI 519 N GLLE++R+R + C C G G + SQ +L+ + E L + + Sbjct: 353 NLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKI----LLKRIREDLKKLKDFEEV 408 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 + H ++ Y KR I + + F V +N+ Sbjct: 409 TLKVHPNMSGYF---KREDIKKLQKEFKVKLNL 438 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 V+ D +EE+ F+ I G IYL ++ ++ P L+AAFV G R+ FL EI+ Sbjct: 4 AVMDDGELEEVFFDEIET--IAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINEA 61 Query: 78 Y 78 Y Sbjct: 62 Y 62 >gi|72382905|ref|YP_292260.1| RNAse E [Prochlorococcus marinus str. NATL2A] gi|72002755|gb|AAZ58557.1| RNAse E [Prochlorococcus marinus str. NATL2A] Length = 640 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 129/558 (23%), Positives = 246/558 (44%), Gaps = 26/558 (4%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I E+++ RQ +LVQ++KE G KG +T ++L GRY VL P +G ISR+I+ +R Sbjct: 82 ITELLEPRQKVLVQVMKEPTGTKGPRLTGNIALPGRYLVLQP-YGQGVNISRRISTESER 140 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L+ L P G+++RT ++ + D E L++ W+ +++ + + P L+ Sbjct: 141 NRLRA-LGVLVKPPSTGLLIRTEAEDISEEFLIDDLENLLKQWELIQQASESCTPPILLN 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + I R +RD +++++I+V + K+F+ + + D I + Sbjct: 200 RDEDFIHRILRDHTGQNLTQIVVDNSEAIGRVKNFLGKDSNEL--TIELHNDSENILEKY 257 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + ++ + V LPS GY+II TEAL IDVNSG TR +T L TN EAA E Sbjct: 258 KVISSINEALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRETVLWTNCEAAIE 317 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQL+LR++ G+I++DFIDM+ K++ + + ++ D AR Q+ +++ GL+E++R Sbjct: 318 IGRQLKLRNIGGVIIIDFIDMDTKRDQLQLLEHFTSAINGDSARPQIASLTELGLVELTR 377 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS--------------ILRSVEEYLLQYT 515 +R ++ E K +G GY+ S + ++ I + L + Sbjct: 378 KRQGQNIYELFGKTSPNSQGQGYLPSITIQDINPTTPSEAGVINATLISGEDIQSLQESN 437 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++ D+ L N++ + + + I+ ++ Sbjct: 438 NKKKRINKARDIEANLSNEEHKSSTDNSKAISTD-TITEDIQKESNN-----KRKETTII 491 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-- 633 N + + + + L K + ++ E+S +++ Sbjct: 492 NINMNQNEEIVYSLMGLDPILLLEKPPLSENYKVNIIRPGKEETREEKSNMPEGNQQKIV 551 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + ++ D + D S+I+ +S + + + N +L + N++ Sbjct: 552 DDSISKHQNNNKDIIRLKDKSNIEQKSTNSDEKESDEEEKINVDLDQETNELININHNSI 611 Query: 694 IPPVSTPEMESSNSSSDP 711 P ES + DP Sbjct: 612 SEKNELPSTESQEVNEDP 629 Score = 74.6 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%) Query: 1 MANKMLIDASHVEETRVV-VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E R+ +L D R++EL G+I+L V V P + AAFV Sbjct: 1 MPQQIVI----AEHLRIAALLTDERIDELIV--AQGSYQIGDIFLGTVENVLPGIDAAFV 54 Query: 60 DYG-GNRHGFLPFLEIHP 76 + G ++GF+ ++ P Sbjct: 55 NIGESEKNGFIHVNDLGP 72 >gi|213585877|ref|ZP_03367703.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 262 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 129/259 (49%) Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLP 366 + I V Y +F +P + Y PIF +E ++ + +V L Sbjct: 1 MDRIRVDSRLTYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYDVENEIQRALERKVELK 60 Query: 367 SRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVD 426 S GY+II+QTEA+ ++D+N+G ++DT TN+EA + IARQLRLR+L G+I++D Sbjct: 61 SGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIID 120 Query: 427 FIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 FIDM + + R V L+++L KDR + + S GL+EM+R+R R SV C Sbjct: 121 FIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRKRTRESVEHVLCNECPT 180 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 C G G +++ +V I+R + Y + +V+ V L ++ + E E Sbjct: 181 CHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFV 240 Query: 547 GVSINVVIGIELADKLFYI 565 G + V + + F + Sbjct: 241 GKQVKVQVEPLYNQEQFDV 259 >gi|227542956|ref|ZP_03973005.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51866] gi|227181178|gb|EEI62150.1| ribonuclease [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 203/373 (54%), Gaps = 13/373 (3%) Query: 155 GSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 R+ I + +K+ +LVQ+ K+ G+KGA +T +SLAGRY V +P Sbjct: 345 DIDWRQMGLGGRKRRIDQALKSGDQVLVQVSKDIVGHKGARLTMQISLAGRYLVYVP-RG 403 Query: 215 KGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 + ISRK+ P ++ LK I + G G I+RTA ++ EI D E L LW++ Sbjct: 404 RNAGISRKLPEPERKR-LKAILNDVIPNEG-GAIVRTAAEGVSEKEIAADVERLHSLWED 461 Query: 275 VRELALNSVAPH-----LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + + A +YEE +++ R +RDL+ +D S ++V G++ Y D++ + Sbjct: 462 IAQRTEEEKASKGAKPVTMYEEPDVLVRVVRDLFNEDFSTLVVEGDRAYNTVSDYVNTVA 521 Query: 330 PSYA----RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 P A + + D +F + I+ QL +V LPS G +II++TEA+ IDVN Sbjct: 522 PDLAERVVKYEAENNDGKDVFEKYRIDEQLQKALGRKVWLPSGGTLIIDRTEAMTVIDVN 581 Query: 386 SGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 +G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++LK Sbjct: 582 TGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENRDLVLRRLK 641 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 E+L +DR R QV +++ GL++M+R+++ + +LE+ C C G G I + V Sbjct: 642 EALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLLETFATTCEACDGRGIILHEDPVEQQEK 701 Query: 505 RSVEEYLLQYTAH 517 R V + + Sbjct: 702 RPVYGRNKKRRSK 714 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E S GNIYL +V V S++AAF+D G R+G L +I Sbjct: 287 TQIGVLEDEMLVEHFVTSNTAASQVGNIYLGRVQNVLDSMEAAFIDIGTGRNGVLYSADI 346 >gi|164687843|ref|ZP_02211871.1| hypothetical protein CLOBAR_01487 [Clostridium bartlettii DSM 16795] gi|164603118|gb|EDQ96583.1| hypothetical protein CLOBAR_01487 [Clostridium bartlettii DSM 16795] Length = 466 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 113/394 (28%), Positives = 208/394 (52%), Gaps = 3/394 (0%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 + IKN +LVQI KE G K +T +SL+GRY VL+P+ + ++ + + Sbjct: 73 DNIKNGMEVLVQINKEGVGTKAPKLTQEISLSGRYLVLIPSNDRITISNKILEEKERFRL 132 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 K +G+I+RT + ++K DF+ L++ + + + P L+Y E Sbjct: 133 KK--IVKSFNKEKLGIIIRTEAVNCDIDKLKEDFDLLIKRHQEILKQFKLGIGPKLLYRE 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 +L + I+D +DI +I+++ + Y E K + + Y + + E+ +F + Sbjct: 191 LDLDTKYIKDNINEDIDKIVINDKTKYDEIKSILSNINKDYIQKLVLEENK-DVFDLYKV 249 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 +++ +V L S GY+II +TEAL IDVN+G+ T E+T +TNLEA EEIA Sbjct: 250 SKEIEKALSKKVWLKSGGYLIIEKTEALTVIDVNTGKFTGSLSREETMYKTNLEACEEIA 309 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQL++RD+ G+I+VDFID+ +KK ++ KKL+E+LK D+ + +V I+ GL+E++R+R Sbjct: 310 RQLKIRDIGGIIIVDFIDLHKKKYKENLIKKLEEALKSDKRKSEVLGITRLGLVEIARRR 369 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + C CK +S + + + + + +NI++ + + Sbjct: 370 EKDSIDSYYLRACETCKSDFSQKSINYILDDLEKEIMRVKEHTNYNNILMELKPYIYNEM 429 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 L++ + I + + ++ ++I + + K I Sbjct: 430 LDKYKDCIKKLKNKYSINIEISKTENINQKDVKI 463 Score = 74.2 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 K +I S V T+ V++ N++ EL E K+ K NIY V ++P ++AAFVD G Sbjct: 2 KQIIVQSLVSSTQTAVIKGNKLVELLIEDNIHKKTKSNIYRGIVKNIKPGIEAAFVDIGF 61 Query: 64 NRHGFLPFL 72 + +LP Sbjct: 62 EKMAYLPIK 70 >gi|298252878|ref|ZP_06976672.1| ribonuclease G/E [Gardnerella vaginalis 5-1] gi|297533242|gb|EFH72126.1| ribonuclease G/E [Gardnerella vaginalis 5-1] Length = 1077 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 130/582 (22%), Positives = 258/582 (44%), Gaps = 27/582 (4%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + L+ + +V +D + + + + V I + S+ +A D+ Sbjct: 497 ERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIG 556 Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V G D+ + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 557 QARNGVLYAGEVNWDMARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 616 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ +SRK+++ + P MGVI+RTA ++ I++D Sbjct: 617 RFLVLVPSGGMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGVIIRTAADGASEESIEKD 673 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + L++ W+ + + P L+ E ++ R +RD++ D ++IV GE + Sbjct: 674 LDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRI 733 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++++ P V ++ F + I+ QL + +V LP+ G ++I++TE Sbjct: 734 DEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 793 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 794 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 853 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C CKG G+I Sbjct: 854 DLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 913 Query: 497 SSVALS------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 S L+ + ++ A + AR + Sbjct: 914 EPTVSSEYADPYALKGGDPFVKTNKYG--HGSATEQPAPVKQQGSSAEVRAKLARIAAAS 971 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + +++ + + A + + + + E Sbjct: 972 VITDAAHKSEEETQYSNFLNSDKESVSSKADETGETADAGETAETSEVAETSEADKTSEE 1031 Query: 611 SLEDIQDNIVSE------ESTGVIRKRRRRRRRRRPATDHHD 646 +E+ ++ E E + + + T++ D Sbjct: 1032 LIENNLEDTTQEIAGYTSEQPAQEPAQEPMQDATQETTENDD 1073 Score = 86.6 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL ++ V PS++AAFVD G R+G L E+ Sbjct: 509 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV 568 Query: 75 HPD 77 + D Sbjct: 569 NWD 571 >gi|330981114|gb|EGH79217.1| ribonuclease G [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 404 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 184/322 (57%), Gaps = 5/322 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + Q L+VQ+ K+ G+KGA +TT LS+ RY V MP T+ IS KI + +R Sbjct: 84 IASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVG-ISLKIEDEAER 142 Query: 230 KNLKEIARGLEVPAGM----GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LK++ G+ G ILRTA EI D YL RLWD + E P Sbjct: 143 ERLKKVVSDCVAQEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPP 202 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YE+ L R +RDL I +I + + +++ F+ LMP A + Y PI Sbjct: 203 TVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPI 262 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+E ++ + +V L S GY++I+ EA+ +IDVN+G +E+T +TNLE Sbjct: 263 FDLYGVEDEIQKALERKVPLKSGGYLVIDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLE 322 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA IARQLRLR+L G+I++DFIDME+ ++ R V + L++ L++D A+ + I+ GL+ Sbjct: 323 AATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382 Query: 466 EMSRQRIRSSVLESTTKVCTYC 487 +M+R+R R S+ + + C C Sbjct: 383 QMTRKRTRESLEQVLCEPCHCC 404 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|148270316|ref|YP_001244776.1| ribonuclease [Thermotoga petrophila RKU-1] gi|147735860|gb|ABQ47200.1| RNAse G [Thermotoga petrophila RKU-1] Length = 454 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 211/445 (47%), Gaps = 16/445 (3%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + +E+ IA + E I+ + + + + I Sbjct: 2 DDGELEEIFFDEIETIAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVYRETI 61 Query: 171 --QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 ++ +K Q +LVQ+ K+ G KG VTT + +A R+ V+ P K +SRKI + + Sbjct: 62 LKEQEVKEGQKILVQVKKDASGKKGPQVTTQIGIADRFVVIFPFK-KVIGVSRKIEDASE 120 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 R+ L+ A L G+GVI+RTA + EI ++FE + W+ V + S P L+ Sbjct: 121 RRRLRTTAFSLRKRHGVGVIVRTAAEGVDEEEIIKNFERALEKWNQVLQKFRRSRKPKLL 180 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 +EE + +++ I++ I +I + ++ + + + +F + Sbjct: 181 HEE-DPVEQIIKEKVNSKIDRLIYNNRSLLET----LQKYLQNLPKKPELEYVEGDLFEK 235 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 + ++ L V L S G ++I++TEAL IDVNS T E+ AL+TN+EA E Sbjct: 236 FSVYERMKKLLSRTVQLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELALKTNMEAIE 295 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 EI RQL LR++ G++V+DFI ++ K+ + + KE K+D R+++ +N GLLE++ Sbjct: 296 EIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFTNLGLLEIT 355 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDV 527 R+R + C C G G + SQ +L+ + E L + + + H ++ Sbjct: 356 RKRTTRPLDTLLFTRCPVCSGTGKVLSQKI----LLKRIREDLKKLKNFEEVTLKVHPNM 411 Query: 528 VLYLLNQKRATIVEYEARFGVSINV 552 Y KR I + + F V +N+ Sbjct: 412 SGYF---KREDIKKLQKEFKVKLNL 433 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79 + D +EE+ F+ I G IYL K+ ++ P L+AAFV G R+ FL EI+ Y Sbjct: 1 MDDGELEEIFFDEIET--IAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVY- 57 Query: 80 QIPFSDRQALLKESNIAQ 97 R+ +LKE + + Sbjct: 58 ------RETILKEQEVKE 69 >gi|217076233|ref|YP_002333949.1| cytoplasmic axial filament protein [Thermosipho africanus TCF52B] gi|217036086|gb|ACJ74608.1| cytoplasmic axial filament protein [Thermosipho africanus TCF52B] Length = 465 Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 120/435 (27%), Positives = 212/435 (48%), Gaps = 10/435 (2%) Query: 110 GDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYC 169 + + S EE N E+ + + + V+ E G + Y Sbjct: 20 ENNKLVELFSDEEKKLTGNIYLGRVEKVVNALDAIFVNIGEKKNGFLRIKDIPEKYYDYF 79 Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 + IK +L+Q+ K+ G KG +T +S+AGRY V+ P S +S+KI + +R Sbjct: 80 SVKEIKEGSKILIQVKKDPTGTKGPQLTANISIAGRYLVVFPF-SNVNGVSKKIESEDER 138 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L +IA + G GV++RTA + I + L D++ ++Y Sbjct: 139 QRLYKIANEISNNNGFGVVIRTAAEGLNEKYIYSEAITLKEKLDDLLSNFKRKRKIQILY 198 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 E +LI +R+ K+++++I + K + ++K+ + + + F + Sbjct: 199 TEESLIDYILRERLTKEVTQVITNNIKHIEVIRKYLKI----FPKRPKIEIIDGDSFEYT 254 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + L + +TLPS G +II++TEAL IDVNS T+ ++TA +TN EA EE Sbjct: 255 NVNKYFKELIKRTITLPSGGEIIIDKTEALTVIDVNSKHFTKGLNQQETAFKTNYEAVEE 314 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 I RQLRLR++ G++++DFIDM ++N + +K+ E +KKD++++++ + GLLE+SR Sbjct: 315 IFRQLRLRNIGGIVIIDFIDMNSEENKNKILEKVNEEIKKDKSKIEIFGFTKLGLLELSR 374 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 +R S E+ C C G+G+I+S + I +E A +I+ H + Sbjct: 375 KRTIKSFFENYVSTCPVCGGSGFIQSPRFLLKEIFAKIENAP--KEAKEVIIKLHPYMKN 432 Query: 530 YLLN---QKRATIVE 541 Y+ +KR + Sbjct: 433 YIDKSELKKRKDLNY 447 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 118/361 (32%), Gaps = 14/361 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L+ S + ++ +N++ EL S+ +K++ GNIYL +V +V +L A FV+ Sbjct: 1 MEK-ILVLNSIEDNLHYAIIENNKLVELF--SDEEKKLTGNIYLGRVEKVVNALDAIFVN 57 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++GFL +I YY D ++ + ++ + D + + S+ Sbjct: 58 IGEKKNGFLRIKDIPEKYY-----DYFSVKEIKEGSKILIQVKKDPTGTKGPQLTANISI 112 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 + S + D + + + I+ + Sbjct: 113 AGRYLVVFPFSNVNGVSKKIESEDERQRLYKIANEISNNNGF----GVVIRTAAEGLNEK 168 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 + K + + + +L S + I R+ + + + +E Sbjct: 169 YIYSEAITLKEKLDDLLSNFKRKRKIQILYTEESLIDYILRERLTKEVTQVITNNIKHIE 228 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 V I ++ + + + + + + + + + I Sbjct: 229 VIRKYLKIFPKRPKIEIIDGDSFEYTNVNKYFKELIKRTITLPSGGEIIIDKTEALTVI- 287 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 D+ K ++ + E ++ + ++ + R+ F E + + + Sbjct: 288 DVNSKHFTKGLNQQETAFKTNYEAVEEI-FRQLRLRNIGGIVIIDFIDMNSEENKNKILE 346 Query: 361 T 361 Sbjct: 347 K 347 >gi|15644354|ref|NP_229406.1| cytoplasmic axial filament protein, putative [Thermotoga maritima MSB8] gi|4982177|gb|AAD36673.1|AE001804_17 cytoplasmic axial filament protein, putative [Thermotoga maritima MSB8] Length = 454 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 115/393 (29%), Positives = 199/393 (50%), Gaps = 14/393 (3%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 + +++ + +K Q +LVQ+ K+ G KG VT + +A R+ V+ P K +S Sbjct: 54 NEAYRKTVLKGQEVKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPFK-KVIGVS 112 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 RKI + +R+ L+ IA L G+GVI+RTA + EI ++FE + W+ V + Sbjct: 113 RKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVLQKFR 172 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 S P L+YEE + +++ I++ I ++I + ++ + + + Sbjct: 173 RSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLET----LQKYLQNLPKKPEIEY 227 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 +F + + +L L V L S G ++I++TEAL IDVNS T E+ AL Sbjct: 228 VEGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELAL 287 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 +TN+EA EEI RQL LR++ G++V+DFI ++ K+ + + KE K+D R+++ + Sbjct: 288 KTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFT 347 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNI 519 N GLLE++R+R + C C G G + SQ +L+ + E L + + Sbjct: 348 NLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKI----LLKRIREDLKKLKDFEEV 403 Query: 520 IVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 + H ++ Y KR I + + F V +N+ Sbjct: 404 TLKVHPNMSGYF---KREDIKKLQKEFKVKLNL 433 Score = 71.9 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 + D +EE+ F+ I G IYL ++ ++ P L+AAFV G R+ FL EI+ Y Sbjct: 1 MDDGELEEVFFDEIET--IAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINEAY 57 >gi|296104960|ref|YP_003615106.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059419|gb|ADF64157.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 257 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 128/254 (50%) Query: 312 VSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371 + Y +F +P ++ Y PIF +E ++ + +V L S GY+ Sbjct: 1 MDSRLTYEALLEFTAEYIPEMPGLLEHYTGRQPIFDLYDVENEIQRALERKVELKSGGYL 60 Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431 II+QTEA+ ++D+N+G ++DT TN+EA + IARQLRLR+L G+I++DFIDM Sbjct: 61 IIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 120 Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 + + R V L+++L KDR + + S GL+EM+R+R R SV C C G G Sbjct: 121 NEDHRRRVLHSLEQALSKDRVKTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRG 180 Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 +++ +V I+R + Y + +V+ V L ++ + E E G + Sbjct: 181 TVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGKQVK 240 Query: 552 VVIGIELADKLFYI 565 V I + F + Sbjct: 241 VQIEPLYNQEQFDV 254 >gi|270284329|ref|ZP_06193944.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium gallicum DSM 20093] gi|270276653|gb|EFA22507.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium gallicum DSM 20093] Length = 898 Score = 191 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 113/355 (31%), Positives = 192/355 (54%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ ++ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 468 GEVNWDTTRLEGQPRRIEHAFRSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 527 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + P MGVI+RTA ++ I +D E LM W+ Sbjct: 528 GMTGVSRKL---SEHERSRLKSIVAKVAPKDMGVIIRTAAEGASEEAITKDLENLMHQWE 584 Query: 274 NVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++ N P L+ E ++ R +RD++ D S++IV GE Y +++ + P Sbjct: 585 HITAKREEFRNGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGETVYERIAEYLDTMAP 644 Query: 331 SYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + Q++ F + I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 645 DLKAKLEQWDPAEHQGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 704 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR + +E+T NLEAAEEIARQLRLRD+ G++++DF+DM N V ++L E Sbjct: 705 GRFIGKGRSLEETVTACNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLLE 764 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 765 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFIVHDEPTV 819 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 411 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 470 Query: 75 HPD 77 + D Sbjct: 471 NWD 473 >gi|297243303|ref|ZP_06927237.1| ribonuclease G/E [Gardnerella vaginalis AMD] gi|296888710|gb|EFH27448.1| ribonuclease G/E [Gardnerella vaginalis AMD] Length = 1079 Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats. Identities = 135/614 (21%), Positives = 270/614 (43%), Gaps = 46/614 (7%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + L+ + +V +D + + + + V I + S+ +A D+ Sbjct: 491 ERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIG 550 Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V G D+ + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 551 QARNGVLYAGEVNWDMARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 610 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ +SRK+++ + P MGVI+RTA ++ I++D Sbjct: 611 RFLVLVPSGGMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGVIIRTAADGASEESIEKD 667 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + L++ W+ + + P L+ E ++ R +RD++ D ++IV GE + Sbjct: 668 LDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRI 727 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++++ P V ++ F + I+ QL + +V LP+ G ++I++TE Sbjct: 728 DEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 787 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 788 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 847 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C CKG G+I Sbjct: 848 DLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 907 Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-----ARFGVSIN 551 ++ + ++ K E + G S Sbjct: 908 EPTV--------------SSEYADPYALKGGDPFVKTNKYGHGSATEQPAPVKQQGSSAE 953 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 V + + + + + HK ++Q ++ + + +A +++ Sbjct: 954 VRA---------KLARIAAASVITDAAHKSEEETQYSNFLNSDKESISSKADETGETADA 1004 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E + + V+E S +++ ++ Q + + D EP Sbjct: 1005 GETAETSEVAETSEADKTSEEL-----VENNLEDTTQEIAEYTAEQPTQEPAQDTTQEPM 1059 Query: 672 DITNHNLLENGAHG 685 + Sbjct: 1060 QDATQETTQETTEN 1073 Score = 86.2 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL ++ V PS++AAFVD G R+G L E+ Sbjct: 503 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV 562 Query: 75 HPD 77 + D Sbjct: 563 NWD 565 >gi|283798004|ref|ZP_06347157.1| cytoplasmic axial filament protein [Clostridium sp. M62/1] gi|291074307|gb|EFE11671.1| cytoplasmic axial filament protein [Clostridium sp. M62/1] Length = 441 Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats. Identities = 103/480 (21%), Positives = 189/480 (39%), Gaps = 57/480 (11%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +NK+LI + + + D + L+ E + I GNIY+ KV + ++ +AFVD Sbjct: 5 SNKLLITRWNGQIL-TALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAFVDL 63 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 G + G YY Sbjct: 64 GSGQIG----------YY------------------------------------------ 71 Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILL 181 T+E + A N + E+ + + K ++ Sbjct: 72 -SLKENKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKERLPKAGDEII 130 Query: 182 VQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEV 241 VQ+ ++ K +T+ L+ G+Y VL ++ + K + + Sbjct: 131 VQVERDAVKTKDPVLTSNLNFTGKYLVLTLGKNQIGFSGKIRDGA--WKESLKKILEEKK 188 Query: 242 PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRD 301 G+I+RT I R+ E L + A L+ +IRD Sbjct: 189 DDSFGIIVRTNAREADIQSILRELELLKERKSRLFATAGWRTCYSLLSSSEPSYVNSIRD 248 Query: 302 LYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYEDPHPIFFRSGIEVQLDSLHQ 360 Y +++ I+ Y + +M+ ++ + P+ ++ ++ Sbjct: 249 TYAENLEAIVTDDRDCYDALRTYMEENQREDLEKLSFYEDTMVPLAKLYSLDTAMEQALG 308 Query: 361 TEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 V L S GY++I TEAL IDVN+G+ + +T L+ N EAA EIARQ++LR+L+ Sbjct: 309 KHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVEIARQMQLRNLS 368 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 G+I+VDFIDM+ ++ + + + L+ L +D + + ++ GL+E++R++IR + E Sbjct: 369 GIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITRKKIRRPLAEQV 428 >gi|163782370|ref|ZP_02177368.1| cytoplasmic axial filament protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882403|gb|EDP75909.1| cytoplasmic axial filament protein [Hydrogenivirga sp. 128-5-R1-1] Length = 466 Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats. Identities = 130/457 (28%), Positives = 214/457 (46%), Gaps = 23/457 (5%) Query: 89 LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148 LLKE I++ E G + + A +E+ + + Sbjct: 18 LLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDIGIGKEAYLPLKAYENTA 77 Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 +E+ + + + +LVQ+ +E +KGA VT +S+ G++ V Sbjct: 78 LEEDES----------------CPLPEEGSEILVQMKREPIEDKGAKVTCRISIPGKFLV 121 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 +P + K S+ + R L+ GVI+RT+ T+ E+ + + L Sbjct: 122 YLPTSKKVFVSSKIEDENRRAFFKELFERALD---EEGVIVRTSAEFATEEELLAELQKL 178 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 W ++E + S+ LVYEE + +RD + D+SEIIV + + E ++ Sbjct: 179 RNTWKEIKERSA-SIKQGLVYEEVPAYVQLVRDYWN-DVSEIIVDDRELWSELLAELESY 236 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P VR ++ F + G++ L L V L + GY+II +TEA+ IDVNSG Sbjct: 237 FPELVGKVRYVKNISVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAMTVIDVNSGS 296 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 +ED ALQTNLEAAEEI RQ++LRD+ G++++DFIDM+ KKN + K++KE Sbjct: 297 G-CGDTLEDNALQTNLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKLVKRVKELFA 355 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 + ++V V I++ GLLE++R++ SV + C YCKG GYI+S V I + + Sbjct: 356 DEGSKVHVYGITHLGLLELTRKKETPSVTRLLSINCPYCKGKGYIKSPEVVLYEIEKEIN 415 Query: 509 EYLLQYTAHNIIVHTHSDVVLYL-LNQKRATIVEYEA 544 + +Y + V + + R + E Sbjct: 416 YFKGRYLEVRVNPALKERVENLIEKSNMRQWVSVKEE 452 Score = 61.5 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I AS +L++ + E+ E KK++ G+I+ +V R SL AFVD Sbjct: 1 MDVRLIISASRNLVLTF-LLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVD 59 Query: 61 YGGNRHGFLPFL 72 G + +LP Sbjct: 60 IGIGKEAYLPLK 71 >gi|307250032|ref|ZP_07532000.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857954|gb|EFM90042.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 241 Score = 190 bits (482), Expect = 6e-46, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 1/238 (0%) Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 MP V Y +F G+E + V L S GY+II QTEA+ +ID+N+G Sbjct: 1 MPELTENVSLYSGSQTLFDAYGVEDAIQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGA 60 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 + T TN+EA + IA QL+LR+L G+I++DFIDM+E+++ V + L+E+LK Sbjct: 61 FVGHRNLAHTIFNTNIEATQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALK 120 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVE 508 DR + V + GL+EM+R+R R S+ C CKG G I++ +V ILR + Sbjct: 121 GDRVKTNVNGFTQLGLVEMTRKRTRESLERVLCCDCPACKGRGTIKTVETVCYEILREIV 180 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQK-RATIVEYEARFGVSINVVIGIELADKLFYI 565 + + V+ +V YL+N++ A+I E EA G I + + F + Sbjct: 181 RVHHLFKTEKVRVYASKEVAEYLINEETHASIAELEAFIGKKIEIKLEPYYHQDQFDV 238 >gi|300775503|ref|ZP_07085364.1| ribonuclease E [Chryseobacterium gleum ATCC 35910] gi|300505530|gb|EFK36667.1| ribonuclease E [Chryseobacterium gleum ATCC 35910] Length = 519 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 119/434 (27%), Positives = 213/434 (49%), Gaps = 9/434 (2%) Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 D +S + ++ + + + +VI ++L+QI KE KG ++T +SL Sbjct: 85 KDTISKKQSTSSLKNFEIQPEIDKNGTVDKVIAKDDLVLLQITKEPISTKGPRISTQISL 144 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 GR+ VL+P +K +IS+KI + +++ L+ + ++ G GVI+RT + ++ Sbjct: 145 TGRFLVLIPFDNK-VSISKKIRSSEEKERLRTLIDSIKPE-GFGVIIRTVAEGKKVADLH 202 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 D L++ W++ + + P V E + +RD + +D II E+ E K Sbjct: 203 NDMNQLVQKWESTFKNIQRNKVPSKVLSEEDKASAILRDNFNQDFVNIICDDEQMVNEMK 262 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS--RGYVIINQTEALV 380 ++++++ P IV+ Y+ P+ +E QL V +PS Y++I TEAL Sbjct: 263 NYIEVIAPEKKNIVQFYDSHIPLLEYYNVEKQLKQSFGKHVNIPSSKGAYLVIEHTEALH 322 Query: 381 SIDVNSGRS--TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRS 438 +DVNSG + T ++ AL+ N AA EIARQLRLRD+ G+IV+DFIDM + R Sbjct: 323 VVDVNSGNNITTGTAVNKEHALKVNKMAATEIARQLRLRDMGGIIVIDFIDMPNSDHRRD 382 Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 + + LKE +K+D+AR ++ S FGL++++RQR R T + G I + Sbjct: 383 LYEHLKEEMKRDKARHKILPPSKFGLIQITRQRNRPEKQIETKEENPNKDGE--IVAPIV 440 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + + ++ L + I +H H V YL ++ +++ ++ + +V Sbjct: 441 IVERMGETLRNILQKEKGK-IYLHVHPFVEAYLTKGIKSIQMKWFMKYKKWVTIVPRDSF 499 Query: 559 ADKLFYIEKGSPVQ 572 + I + Sbjct: 500 KYLEYKIYNAKKEE 513 Score = 95.8 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 45/76 (59%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + + T++ +L D R+ EL + + I G++++ KV ++ P+L AAFV+ G Sbjct: 2 KKELIVSHEDDLTKIALLEDGRLCELHEQEDKSDFIVGDLFIGKVKKLAPNLNAAFVNIG 61 Query: 63 GNRHGFLPFLEIHPDY 78 ++ FL + ++ P Y Sbjct: 62 YDKDAFLHYQDLGPQY 77 >gi|281412622|ref|YP_003346701.1| ribonuclease, Rne/Rng family [Thermotoga naphthophila RKU-10] gi|281373725|gb|ADA67287.1| ribonuclease, Rne/Rng family [Thermotoga naphthophila RKU-10] Length = 454 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 212/445 (47%), Gaps = 16/445 (3%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 D + +E+ IA + E I+ + + + + I Sbjct: 2 DDGELEEIFFDEIETIAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVYRETI 61 Query: 171 --QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 ++ +K Q +LVQ+ K+ G KG VTT + +A R+ V+ P K +SRKI + + Sbjct: 62 LKEQEVKEGQKILVQVKKDASGKKGPQVTTQIGIADRFVVIFPFK-KVIGVSRKIEDASE 120 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 R+ L+ A L G+GVI+RTA + EI ++FE + W+ V + S P L+ Sbjct: 121 RRRLRTTAFSLRKRHGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVLQKFRRSRKPKLL 180 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 +EE + +++ I++ I +I + ++ + + + +F + Sbjct: 181 HEE-DPVEQIIKEKVNSKIDRLIYNNRSLLET----LQKYLQNLPKKPELEYVEGDLFEK 235 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 + ++ L V L S G ++I++TEAL IDVNS T E+ AL+TN+EA E Sbjct: 236 FSVYERMKKLLSRTVQLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELALKTNMEAIE 295 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 EI RQL LR++ G++V+DFI ++ K+ + + KE K+D R+++ +N GLLE++ Sbjct: 296 EIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFTNLGLLEIT 355 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA-HNIIVHTHSDV 527 R+R + C C G G + SQ +L+ + E L + +I+ H ++ Sbjct: 356 RKRTTRPLDTLLFTRCPVCSGTGKVFSQKI----LLKRIREDLKKLKNFEEVILKVHPNM 411 Query: 528 VLYLLNQKRATIVEYEARFGVSINV 552 Y K+ + + + F V +N+ Sbjct: 412 SGYF---KKEDLEKLQKEFKVKLNL 433 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 20 LRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79 + D +EE+ F+ I G IYL K+ ++ P L+AAFV G R+ FL EI+ Y Sbjct: 1 MDDGELEEIFFDEIET--IAGKIYLGKIEKIVPGLEAAFVKIGKGRNAFLKLSEINEVY- 57 Query: 80 QIPFSDRQALLKESNIAQ 97 R+ +LKE + + Sbjct: 58 ------RETILKEQEVKE 69 >gi|4689475|gb|AAD27911.1| putative ribonuclease E [Arabidopsis thaliana] Length = 502 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 184/372 (49%), Gaps = 12/372 (3%) Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 ++ P P ++ ++VQ+VKE G KG +T Y L R+ V Sbjct: 112 MDIKSNREPFIFPPFCDGSKKQAADVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWV 171 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 L+ + +S+KI+ + ++ P G G+ +RT A + E+++D + L Sbjct: 172 LLTRCKRIG-VSKKISGVERTR--LKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDGL 228 Query: 269 MRLWDNVRELALNS-------VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + W N+ + A ++ E+ + R + + I+S + Sbjct: 229 LLTWKNITDEAKSAALAADEGPFQRCYIEQWVKHYQLCRTISMTRLYIQIISLTSISLQV 288 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 +++ + P V ++ P+F IE +++ + V L + G ++I QTEALVS Sbjct: 289 THYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVS 348 Query: 382 IDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 IDVN G + + E L+ NL AA +IAR++RLRD+ G+IVVDFIDM ++ N R V Sbjct: 349 IDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLV 408 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 +++K+++++DR+ V+V +S GL+E++R+R+R SV ++ C+ C G + + + Sbjct: 409 YEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETT 468 Query: 500 ALSILRSVEEYL 511 I + + L Sbjct: 469 FSKIEQEICRQL 480 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +LI++S R+ VL ++ EL E ++YL +T+ P + AFV+ G Sbjct: 48 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 107 Query: 65 RHGFLPFLEIHPD---YYQIPFSD 85 RH F+ +I + + PF D Sbjct: 108 RHSFM---DIKSNREPFIFPPFCD 128 >gi|307297973|ref|ZP_07577777.1| ribonuclease, Rne/Rng family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916059|gb|EFN46442.1| ribonuclease, Rne/Rng family [Thermotogales bacterium mesG1.Ag.4.2] Length = 490 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 108/436 (24%), Positives = 192/436 (44%), Gaps = 4/436 (0%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 + ++ D E + T + N V S Sbjct: 18 EDEVRIASLDGDQLEEIFFEDMDSESVTGNIYLGKVENVVPSLEAAFVNIGIGRNAFLRF 77 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + Q ++ +LVQ+ K+ G+KG +T +S+ GR V P + + Sbjct: 78 KDASGQPKLEKNNKVLVQVSKDPIGSKGPQITLKVSIPGRSLVYTPFSKHIGISKKITDQ 137 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++ + GVI RTA IK + E L W+ + E S P Sbjct: 138 QERQR--LTAVAKSTLENKEGVIFRTAAFGVGDETIKEELESLRTNWNQICETFRRSRKP 195 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 ++YEE + ++ +R+ ++ EI+V E+ + + + + +VR E Sbjct: 196 KILYEEPSFVEYILRERLTENTKEIVVDSEELWHDVVAGISKFKSGFKPVVRYVEGD--A 253 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F + ++ L+ V+LP G + I++TEA+ IDVNS + + + +T+L TNLE Sbjct: 254 FASEEVYEKMKILYTRMVSLPGGGNIYIDRTEAMTVIDVNSASNVSGNDVSETSLNTNLE 313 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA EIARQL+LR++ G++V+DFIDM+ ++ + + L KKD+AR + + GLL Sbjct: 314 AASEIARQLKLRNIGGIVVIDFIDMKSDEDRQKIISSLTGEFKKDKARTMIMGFTRLGLL 373 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EM+R+R +++ C CKG G I S +V +L+ + T + V + Sbjct: 374 EMTRKRSSAAIGSKLYSSCPICKGTGRIESPRAVYQRLLKDLARGFEDETISSATVQVYQ 433 Query: 526 DVVLYLLNQKRATIVE 541 ++ L + + + + Sbjct: 434 NMSGILTPENQKNLAK 449 Score = 101 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 13 EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72 +E R+ L +++EE+ FE + + GNIYL KV V PSL+AAFV+ G R+ FL F Sbjct: 19 DEVRIASLDGDQLEEIFFEDMDSESVTGNIYLGKVENVVPSLEAAFVNIGIGRNAFLRFK 78 Query: 73 E 73 + Sbjct: 79 D 79 >gi|183601868|ref|ZP_02963237.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019] gi|219682782|ref|YP_002469165.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011] gi|241190358|ref|YP_002967752.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195764|ref|YP_002969319.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218753|gb|EDT89395.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019] gi|219620432|gb|ACL28589.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011] gi|240248750|gb|ACS45690.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250318|gb|ACS47257.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793345|gb|ADG32880.1| ribonuclease G [Bifidobacterium animalis subsp. lactis V9] Length = 1028 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 11/355 (3%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAGR+ VL+P+ Sbjct: 546 GEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG 605 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 +SRK+++ + + P MGVI+RTA ++ I +D E L W Sbjct: 606 GMTG-VSRKLSDRERNR--LKSIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWA 662 Query: 274 NVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 ++ + P L+ E ++ R +RD++ D +++IV G+ Y ++++ + P Sbjct: 663 EIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAP 722 Query: 331 SYARIVRQYEDPHP----IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + +++ +F R I+ QL + +V LPS G ++I++TEA+ +IDVN+ Sbjct: 723 DLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNT 782 Query: 387 GRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 GR + +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N V ++L E Sbjct: 783 GRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVE 842 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVA 500 L +DR + QV +++ GL++M+R+RI ++E+ ++ C CKG G+I Sbjct: 843 CLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGFIVHDEPTI 897 Score = 87.3 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 489 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 548 Query: 75 HPD 77 + D Sbjct: 549 NWD 551 >gi|296118763|ref|ZP_06837339.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306] gi|295968252|gb|EFG81501.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306] Length = 1374 Score = 189 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 143/579 (24%), Positives = 237/579 (40%), Gaps = 25/579 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G R I++ +K+ +LVQ+ K+ G+KG +TT +SL GR+ V +P Sbjct: 585 GEVNWRQAGLGGRARKIEQAMKSGDQVLVQVAKDPVGHKGPRLTTQVSLPGRFLVYVPG- 643 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISRK+ P ++ L+EI + G G I+RTA + + I D L W+ Sbjct: 644 GRNAGISRKLPAPERKR-LREILEKVVPEQG-GAIIRTAAENVAEEAIAADVNRLHDTWN 701 Query: 274 N-----VRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 +E A P +YEE ++ + +RDL+ +D ++V G++ Y ++ L Sbjct: 702 EIKEAAEKEKASKGTEPVALYEEPQMLVKVVRDLFNEDFDRLVVDGKRPYEVVSSYVNRL 761 Query: 329 MPSYARIVRQYED----PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 P A V +Y F I+ QL +V LPS G ++I++TEA+ +DV Sbjct: 762 APELADRVSRYNRADNGGIDAFETYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVVDV 821 Query: 385 NSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 N+G+ T +E+T + NLEAAEEI RQ+RLRDL G+IVVDFIDM +N V ++L Sbjct: 822 NTGKFTGTGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRL 881 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 KE+L +DR R QV +++ GL++M+R+R+ S +LE + C C+G G I + V Sbjct: 882 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGSGLLEIFSTECEVCQGRGLILHEDPVEEDP 941 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-- 561 + + H D + K A E E + Sbjct: 942 SEAHDHRHDARDDKRRSAKKHRD---HTRQDKHAHKDESEEAHDEQ---ASDEDKQTPTE 995 Query: 562 ----LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 S ++ + H S ++ + +D + S +E+ Sbjct: 996 SGGRRKARRSSSQRRSQDSRRHDSSRHDARRSDKRSDDSSLEDLIAGIVVDSSQVEEEAQ 1055 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 +++ + R + + VS D Y + + Sbjct: 1056 RDTKSDNSVTDIESIAYAASDRAESLDDVGEFSTYVSEDSADADTGGRSYEQALKEYEQS 1115 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 D E ++ + Sbjct: 1116 PRRKRKTRGNSRSDYPPRREDFASSEDRGTTQRDTSQSD 1154 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 36/66 (54%) Query: 11 HVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 H T+V VL D + E E I GNIYL +V V PS++AAF+D G R+G L Sbjct: 524 HGNITQVGVLEDGMLVEHFVTDETNTSIIGNIYLGRVQNVLPSMEAAFIDIGTGRNGVLY 583 Query: 71 FLEIHP 76 E++ Sbjct: 584 AGEVNW 589 >gi|228910281|ref|ZP_04074098.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 200] gi|228849341|gb|EEM94178.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 200] Length = 462 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 109/409 (26%), Positives = 193/409 (47%), Gaps = 21/409 (5%) Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 75 CYRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DQMRAVSRKIKNNKR-- 131 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 --RQQLLQIEVEGTGGYIFRSASEKGAIEEIQAEMQMLQQLYEELQRKEGQGKAPLLLHR 189 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + R ++ + I +++V +E ++ + S+ Y + +F G Sbjct: 190 PATFLDRVFQENPIETIEKVVVDTRSIVKELEENIGKEKVSF------YNEKSSMFNHFG 243 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 IE +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEI Sbjct: 244 IEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEI 303 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+ Sbjct: 304 ARQLRLRDIGGMILIDFINMKRREDKEMVRECLMAAMQNDRTYTRVLGFTELGILEMTRK 363 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R + S+ + + C CK GY+ S ++A + R + Y +++ D+ Sbjct: 364 RKKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPKDLQKQ 422 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + +V Sbjct: 423 FLQ------KELQKNIPFEIYFKDD---MIEKYAIVRFGSKTEIVERKK 462 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY ++ R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSCY 76 >gi|285808218|gb|ADC35752.1| ribonuclease Rne/Rng family protein [uncultured bacterium 293] Length = 728 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 101/419 (24%), Positives = 164/419 (39%), Gaps = 68/419 (16%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++++ A+ +ETRV +L D E E E + GNIY +VTRV P +Q+AFVD Sbjct: 1 MNKELIVSAT-SQETRVALLEDGLAAEXFIEREAHRGHVGNIYKGRVTRVLPGMQSAFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G R FL D LL E + + +P + L Sbjct: 60 IGLERDAFLH------------VEDVLELLGEEPSTEEGEAPPVAARPEAERELPIEERL 107 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQIL 180 +E + + + G+ +Y + + Sbjct: 108 KEGQEVVVQVVKEPLGT----------------KGARITSHISLPGRYLVFMPTVEHVGV 151 Query: 181 LVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLE 240 +IV+++ + L G L G Sbjct: 152 SRKIVEDDERRR---------LKGILKELRTQRGGGG----------------------- 179 Query: 241 VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIR 300 +I RT + + +++RD YL R WD VR P L++ E +L++R +R Sbjct: 180 ------LIARTVSLGKPREDLERDALYLSRAWDEVRARGARDRPPALLHREPSLVQRLLR 233 Query: 301 DLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF-FRSGIEVQLDSLH 359 DL +DIS+I + K Y+ + + L P VR ++ G+ +++ Sbjct: 234 DLLNEDISQIRIDSHKEYQRTVELVSQLAPELLPRVRHHQSNGAGILEEHGVAAEIERAL 293 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 + +V L S GY++INQTEALV+IDVN+GR T + +E+T L ZJ LRD Sbjct: 294 KPKVWLESGGYIVINQTEALVAIDVNTGRYTGKRDLEETILXXXXXXVXZJVXXXXLRD 352 >gi|89098979|ref|ZP_01171859.1| cytosolic axial filament protein [Bacillus sp. NRRL B-14911] gi|89086383|gb|EAR65504.1| cytosolic axial filament protein [Bacillus sp. NRRL B-14911] Length = 492 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 102/408 (25%), Positives = 199/408 (48%), Gaps = 10/408 (2%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I ++ + LLVQ+ K+ G KG +T + G + MP + +SRKI R Sbjct: 91 ISSFVREGEKLLVQVEKDAAGTKGPRLTNVIEFQGEKLIYMPF-GRYVAVSRKIEKDSAR 149 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + L+ + L+ G+I RT+ A ++ + +++ E L + + A + P + Sbjct: 150 EELRTLGMKLKEE-EEGLIFRTSAAGASEEDFQKELEELRAEHRELAKKAASVKKPAKLA 208 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 E+ ++ A ++ E++V + KL + +VR Y + IF Sbjct: 209 EKETFLEEAAAEMARLGAGEVVVDDLAVKQ------KLEKAAAESVVRYYNNKESIFSAY 262 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 ++ ++D + V L + Y+I ++ EAL IDVN+G+ + + DT L+TN AA E Sbjct: 263 NLDQEIDRALKKIVWLDNGAYLIFDEAEALTVIDVNTGKYSGRENLRDTVLRTNEWAAAE 322 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 ARQ+RLRD+ G+I++DFIDM+E+++ + + + +++ L+KD R ++ + G+L+++R Sbjct: 323 AARQIRLRDIGGMILIDFIDMKEERDRQHISRVMEKELRKDERRTRIVGFTPLGILQITR 382 Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 ++ R+++ ES T CT C+G G + S + A + R + E ++ +DV+ Sbjct: 383 KKTRAALSESLTVKCTACEGTGRMVSAETAAFRLEREIWEM-RGSDYEAALIRLSADVLD 441 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 ++ EA G+ + + I + ++ + Sbjct: 442 VFSGEQGIHRKRLEATCGLRLFFAAEDS-RIPFYEIRQLGSLKEIEAK 488 Score = 82.3 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 3 NKMLID-ASHVEETRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 K++I+ A+ E R VL + E+L + G+IYL V +V P + AAFV+ Sbjct: 2 KKLVINYATR--EKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVE 59 Query: 61 YGGNRHGFLP 70 G + GFL Sbjct: 60 IGEEKSGFLH 69 >gi|157363037|ref|YP_001469804.1| ribonuclease [Thermotoga lettingae TMO] gi|157313641|gb|ABV32740.1| ribonuclease, Rne/Rng family [Thermotoga lettingae TMO] Length = 470 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 121/437 (27%), Positives = 202/437 (46%), Gaps = 7/437 (1%) Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160 E + D + S E+ + N E+ I N V+ + G Sbjct: 11 EEKVNVAILSDGVLQEIFSEEDESLSGNIYVGRIEKIIPGLNAAFVNIGGNRNGFLKLTD 70 Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 K + +K +LVQ+ + G KG +T +SLAGR+ V P SK +S Sbjct: 71 ITKQYISEVTKSPVKEGIKILVQVKHDAIGTKGPQLTGKISLAGRFLVYFP-LSKVRGVS 129 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 +K+ P +R L+E++R L GV++RTA + + +F L W V + Sbjct: 130 KKVQEPKERVRLQELSRSL--AKNDGVVIRTAAEFVPEEYVAEEFNQLKSEWRKVLQSFK 187 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 + L+ E + +R+ KDI E+ V+ + Y + +K + A+ Y Sbjct: 188 RARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYEK----VKEVSKRLAKKPMIYF 243 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 +F + I Q+ L + + LPS GY+ ++ TEA+ DVNS E D A Sbjct: 244 FEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAMTVFDVNSASFVSEKNHADLAY 303 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 +TN+EAA EIARQLRLR++ G+++VDFIDM K + K+L+++++ D A +++ + Sbjct: 304 KTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRLTKELQQAIRNDSAHIELIGFT 363 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 GLLEM+R+R S+ + C CKG G + S V ++ + + ++ Sbjct: 364 KLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRVVSPHIVVRRVINELSKIENISEYSSVK 423 Query: 521 VHTHSDVVLYLLNQKRA 537 V H + Y K++ Sbjct: 424 VILHQRLSGYTEKIKKS 440 Score = 99.3 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MAN+++I+ E+ V +L D ++E+ E + + GNIY+ ++ ++ P L AAFV+ Sbjct: 1 MANQLVINI-QEEKVNVAILSDGVLQEIFSE--EDESLSGNIYVGRIEKIIPGLNAAFVN 57 Query: 61 YGGNRHGFLPFLEIHPDY 78 GGNR+GFL +I Y Sbjct: 58 IGGNRNGFLKLTDITKQY 75 >gi|126698755|ref|YP_001087652.1| ribonuclease g [Clostridium difficile 630] gi|255100174|ref|ZP_05329151.1| ribonuclease g [Clostridium difficile QCD-63q42] gi|255306063|ref|ZP_05350235.1| ribonuclease g [Clostridium difficile ATCC 43255] gi|115250192|emb|CAJ68013.1| Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) [Clostridium difficile] Length = 473 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 115/387 (29%), Positives = 199/387 (51%), Gaps = 3/387 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K+ Q +LVQI KEE G KGA + T +S++GRY V +P+ + ++ + K Sbjct: 76 KSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKK- 134 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 +G+I+RT T EIK+D E L ++N+ + + P L+Y+ + Sbjct: 135 -ITKAVNKENLGLIIRTEAQGCTHDEIKKDIEELKLKYENILKEYKLGIGPKLLYKSLDF 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + ++D DI II + Y E K ++ + +Y + E+ +F IE + Sbjct: 194 ATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCL-EENRDVFDLYRIESK 252 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++ L +V L S GY+II +TEAL IDVN+G+ +++T +TNLEAA+EI RQL Sbjct: 253 IEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQL 312 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 R+RD+AG+I++DFIDM +KK+ + + L+E KD+ + +V ++ GL+E++R+R + Sbjct: 313 RIRDIAGIIIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKE 372 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ + C C G I+S + SI + + NI+V + + + Sbjct: 373 SIDKYYLMSCPCCDGEQTIKSVHYILDSIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEY 432 Query: 535 KRATIVEYEARFGVSINVVIGIELADK 561 I + ++ + I++ L Sbjct: 433 YMDIIDKIGEKYNIKISLNANSTLKHN 459 Score = 70.4 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I++ + + VL D R+ EL E K+ NIY V +V P ++A FVD G Sbjct: 2 KKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIG 60 Query: 63 GNRHGFL 69 + +L Sbjct: 61 FKKLAYL 67 >gi|213622839|ref|ZP_03375622.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 225 Score = 187 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 119/222 (53%) Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G ++DT TN Sbjct: 1 PIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTN 60 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 +EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR + + S G Sbjct: 61 IEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLG 120 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 L+EM+R+R R SV C C G G +++ +V I+R + Y + +V+ Sbjct: 121 LVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYA 180 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V L ++ + E E G + V + + F + Sbjct: 181 SPAVAEALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDV 222 >gi|322647281|gb|EFY43779.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 395 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 162/322 (50%), Gaps = 2/322 (0%) Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 +K I E+++ Q L+VQ+VK+ G KGA +TT ++L RY V MP Sbjct: 76 HTECVAGDEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 S R + + LK++ G G I+RTA + ++ D YL R+W Sbjct: 136 ASHVGVSQRIESESERER-LKKVVAEYCDEQG-GFIIRTAAEGVCEEDLASDAAYLKRVW 193 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 V E + +Y E L +R +RD + I V Y +F +P Sbjct: 194 TKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEM 253 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 254 TSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + R V L+++L KDR Sbjct: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 Query: 453 RVQVGAISNFGLLEMSRQRIRS 474 + + S GL+EM+R+R R Sbjct: 374 KTSINGFSPLGLVEMTRKRTRE 395 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|254974694|ref|ZP_05271166.1| ribonuclease g [Clostridium difficile QCD-66c26] gi|255092083|ref|ZP_05321561.1| ribonuclease g [Clostridium difficile CIP 107932] gi|255313820|ref|ZP_05355403.1| ribonuclease g [Clostridium difficile QCD-76w55] gi|255516501|ref|ZP_05384177.1| ribonuclease g [Clostridium difficile QCD-97b34] gi|255649601|ref|ZP_05396503.1| ribonuclease g [Clostridium difficile QCD-37x79] gi|260682765|ref|YP_003214050.1| ribonuclease g [Clostridium difficile CD196] gi|260686363|ref|YP_003217496.1| ribonuclease g [Clostridium difficile R20291] gi|260208928|emb|CBA61933.1| ribonuclease g [Clostridium difficile CD196] gi|260212379|emb|CBE03209.1| ribonuclease g [Clostridium difficile R20291] Length = 473 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 198/387 (51%), Gaps = 3/387 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K+ Q +LVQI KEE G KGA + T +S++GRY V +P+ + ++ + K Sbjct: 76 KSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKK- 134 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 +G+I+RT T EIK+D E L ++N+ + + P L+Y+ + Sbjct: 135 -ITKAVNKENLGLIIRTEAQGCTHDEIKKDIEELKLKYENILKEYKLGIGPKLLYKSLDF 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + ++D DI II + Y E K ++ + +Y + E+ +F IE + Sbjct: 194 ATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCL-EENRDVFDLYRIESK 252 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++ L +V L S GY+II +TEAL IDVN+G+ +++T +TNLEAA+EI RQL Sbjct: 253 IEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQL 312 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 +RD+AG+I++DFIDM +KK+ + + L+E KD+ + +V ++ GL+E++R+R + Sbjct: 313 IIRDIAGIIIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKE 372 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ + C C G I+S + SI + + NI+V + + + Sbjct: 373 SIDKYYLMSCPCCDGEQTIKSVHYILDSIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEY 432 Query: 535 KRATIVEYEARFGVSINVVIGIELADK 561 I + ++ + I++ L Sbjct: 433 YMDIIDKIGEKYNIKISLNANSTLKHN 459 Score = 70.8 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I++ + + VL D R+ EL E K+ NIY V +V P ++A FVD G Sbjct: 2 KKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIG 60 Query: 63 GNRHGFL 69 + +L Sbjct: 61 FKKLAYL 67 >gi|255655161|ref|ZP_05400570.1| ribonuclease g [Clostridium difficile QCD-23m63] gi|296451149|ref|ZP_06892890.1| ribonuclease G and E [Clostridium difficile NAP08] gi|296880499|ref|ZP_06904461.1| ribonuclease G and E [Clostridium difficile NAP07] gi|296259970|gb|EFH06824.1| ribonuclease G and E [Clostridium difficile NAP08] gi|296428453|gb|EFH14338.1| ribonuclease G and E [Clostridium difficile NAP07] Length = 473 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 115/387 (29%), Positives = 197/387 (50%), Gaps = 3/387 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K+ Q +LVQI KEE G KGA + T +S++GRY V +P+ + ++ + K Sbjct: 76 KSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISNKITDEKERFRLKK- 134 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 +G+I+RT EIK+D E L ++N+ + + P L+Y+ + Sbjct: 135 -ITKAVNKENLGLIIRTEAQGCNHDEIKKDIEELKLKYENILKEYKLGIGPKLLYKSLDF 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + ++D DI II + Y E K ++ + +Y + E+ +F IE + Sbjct: 194 ATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCL-EENRDVFDLYRIESK 252 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++ L +V L S GY+II +TEAL IDVN+G+ +++T +TNLEAA+EI RQL Sbjct: 253 IEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYRTNLEAAKEIVRQL 312 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 R+RD+AG+I++DFIDM +KK+ V L+E KD+ + +V ++ GL+E++R+R + Sbjct: 313 RIRDIAGIIIIDFIDMHKKKHQNEVLNILEEEFNKDKRKAEVLGMTKLGLVEVARRREKE 372 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ + C C G I+S + +I + + NIIV + + + Sbjct: 373 SIDKYYLMSCPCCDGEQTIKSVHYILDNIEKEIMRISEHTVYKNIIVEFNDFIFEQIKGY 432 Query: 535 KRATIVEYEARFGVSINVVIGIELADK 561 I + ++ + I++ L Sbjct: 433 YMDIIDKIGEKYNIKISLNANSTLKHN 459 Score = 68.5 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I++ + + VL D R+ EL E K+ N+Y V +V P ++A FVD G Sbjct: 2 KKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNVYRGIVKKVIPGIEACFVDIG 60 Query: 63 GNRHGFL 69 + +L Sbjct: 61 FKKLAYL 67 >gi|228954729|ref|ZP_04116751.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229081711|ref|ZP_04214204.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock4-2] gi|228701556|gb|EEL54049.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock4-2] gi|228804927|gb|EEM51524.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 462 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|228960722|ref|ZP_04122361.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798938|gb|EEM45913.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pakistani str. T13001] Length = 462 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ P L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNYFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQGDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + I + + I + + +V Sbjct: 418 ELQKKFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462 Score = 84.6 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|229152648|ref|ZP_04280836.1| Ribonuclease, Rne/Rng [Bacillus cereus m1550] gi|228630794|gb|EEK87435.1| Ribonuclease, Rne/Rng [Bacillus cereus m1550] Length = 462 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLEIEVEGTGGYIFRSASEKGGIEEIQAEMQGLQQLYEELKRKEDQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L ++K DR ++ + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMKDDRTYTRILGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLEECVSCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 462 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ P Y Sbjct: 61 LEKHAYLSYDDVPPSY 76 >gi|229192657|ref|ZP_04319616.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 10876] gi|228590747|gb|EEK48607.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 10876] Length = 462 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+ KE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVAKEAIDTKGPKLTANIEFTGKYVVYMPF-GEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQELQQLYEELKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKIGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V L + Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLSNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462 Score = 83.1 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|229147016|ref|ZP_04275376.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST24] gi|228636404|gb|EEK92874.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST24] Length = 462 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ P L++ Sbjct: 132 -RKQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + I + + I + + +V Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462 Score = 84.3 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|206969681|ref|ZP_03230635.1| ribonuclease G [Bacillus cereus AH1134] gi|206735369|gb|EDZ52537.1| ribonuclease G [Bacillus cereus AH1134] Length = 462 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQELQQLYEALKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|37521075|ref|NP_924452.1| ribonuclease E [Gloeobacter violaceus PCC 7421] gi|35212071|dbj|BAC89447.1| ribonuclease E [Gloeobacter violaceus PCC 7421] Length = 662 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 205/409 (50%), Gaps = 10/409 (2%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 +Q ++ E + + D + V N + I + + + ++ N Sbjct: 3 KQIIIAEQ--YRLAAVFAEDQIQELIVASGNHQVGDIYLGIVENVLPSIDAAFVNIGNPE 60 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + V + + I E++ +Q +LVQ++KE GNKG +T +SL GR Sbjct: 61 RNGFIHVTDLGQIRLRRSSA---SISELVTPQQKVLVQVMKEPTGNKGPRLTGNVSLPGR 117 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + VLMP +G +SR+I + +R L+ L P GMG+++RT A + + D Sbjct: 118 FLVLMPF-GRGVNLSRRIRDDDERNRLRA-LAVLIKPPGMGLLVRTEAAGMDEQGVLEDL 175 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 E L++ W+ +++ + AP L+ + + I+R +RD Y ++ I+V G + K + Sbjct: 176 ESLLKQWEKIQKQTAETRAPALLNRDEDFIQRILRDAYGAQVNRIVVDSHVGVKRVKQHL 235 Query: 326 KLLMPSYAR---IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 V + +P I + + + V LPS GY+II TEAL I Sbjct: 236 LNWNGGRMPQGVYVEHHREPSSILDYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVI 295 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNSG TR +T L TN EAA EIARQLRLR++AG+I++DFIDM+ +++ V + Sbjct: 296 DVNSGSFTRSATSRETVLWTNCEAATEIARQLRLRNIAGIIIIDFIDMDARRDQLQVLEH 355 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 ++LK D++R Q+ ++ GL+E++R+R S+ E K C C G G Sbjct: 356 FSKALKADKSRPQIAQLTELGLVEITRKRQGQSIYEIFGKPCPTCDGLG 404 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 1 MANKMLIDASHVEETR-VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M +++I E+ R V +++++EL S + G+IYL V V PS+ AAFV Sbjct: 1 MPKQIII----AEQYRLAAVFAEDQIQELIVASGNH--QVGDIYLGIVENVLPSIDAAFV 54 Query: 60 DYGG-NRHGFLPFLEIH 75 + G R+GF+ ++ Sbjct: 55 NIGNPERNGFIHVTDLG 71 >gi|228941613|ref|ZP_04104160.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974542|ref|ZP_04135108.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981137|ref|ZP_04141437.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis Bt407] gi|228778337|gb|EEM26604.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis Bt407] gi|228784945|gb|EEM32958.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817825|gb|EEM63903.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942225|gb|AEA18121.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis serovar chinensis CT-43] Length = 462 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQAEMQGLQQLYEELKRKEDQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L ++K DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMKDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLEECVSCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDD---IIEKYTIIRFGSKKEIVERKK 462 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ P Y Sbjct: 61 LEKHAYLSYDDVPPSY 76 >gi|296504937|ref|YP_003666637.1| Rne/Rng family ribonuclease [Bacillus thuringiensis BMB171] gi|296325989|gb|ADH08917.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis BMB171] Length = 462 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ P L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNYFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQGDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + I + + I + + +V Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|30022520|ref|NP_834151.1| ribonuclease, Rne/Rng family [Bacillus cereus ATCC 14579] gi|229048158|ref|ZP_04193727.1| Ribonuclease, Rne/Rng [Bacillus cereus AH676] gi|229129724|ref|ZP_04258692.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-Cer4] gi|29898078|gb|AAP11352.1| Ribonuclease G [Bacillus cereus ATCC 14579] gi|228653841|gb|EEL09711.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-Cer4] gi|228723145|gb|EEL74521.1| Ribonuclease, Rne/Rng [Bacillus cereus AH676] Length = 462 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ P L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + I + + I + + +V Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462 Score = 84.3 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|218232321|ref|YP_002369253.1| ribonuclease G [Bacillus cereus B4264] gi|218160278|gb|ACK60270.1| ribonuclease G [Bacillus cereus B4264] Length = 462 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 193/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + I + + I + + +V Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462 Score = 84.3 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|229111917|ref|ZP_04241461.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-15] gi|228671481|gb|EEL26781.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-15] Length = 462 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ P L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKVPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNYFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + I + + I + + +V Sbjct: 418 ELQKQFLQKGLQKNIPFEIYFKDD---IIEKYAIVRFGSKKEIVERKK 462 Score = 84.3 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|150021634|ref|YP_001306988.1| ribonuclease [Thermosipho melanesiensis BI429] gi|149794155|gb|ABR31603.1| ribonuclease, Rne/Rng family [Thermosipho melanesiensis BI429] Length = 465 Score = 185 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 192/370 (51%), Gaps = 10/370 (2%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 +N +LVQ+ K+ G+KG +T+ +S+AGRY VL P S+ +S+KI + +RK L + Sbjct: 85 ENGGKILVQVKKDPVGDKGPQLTSNISVAGRYVVLFPF-SEVVGVSKKIEDEDERKRLYD 143 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 +A +GVI+RTA ++ I + + L + + + E ++Y+E NL Sbjct: 144 LAGRFSEKYNLGVIMRTASEGLDEVHIMSEIDILSKKINKIIESFKRKRKAQVLYKEENL 203 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + +R+ KD+ II + K + ++K+ + + F I Sbjct: 204 LDYILREKLTKDVKLIITNNFKHVELIRKYLKIFS----KRPKIEIIDGDSFDYMDIYKY 259 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L + +V LPS G +II++ EAL IDVNS + ++TA QTN EA EI RQL Sbjct: 260 FRELLKRKVLLPSGGEIIIDKAEALTVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQL 319 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR++ G+I++DFIDM+ + + + K++ E +KKD++++++ + GLLEMSR+R Sbjct: 320 RLRNIGGIILIDFIDMDSDEKKKLILKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVR 379 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN- 533 S E+ +C C G G+I S + + +EE A +I+ H L Sbjct: 380 SFFENYITICPICNGTGFIVSPKMTLKKLYQKIEEAP--EDAKEVIIKLHPYFKDKLEKS 437 Query: 534 --QKRATIVE 541 +KR IV Sbjct: 438 ELKKRKDIVY 447 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +L+ S ++ +NR+ EL S+ ++++ GNIYL ++ RV +L A FV+ Sbjct: 1 MEK-ILVLNSLDNGLHYAIIENNRLVEL--ASDEEEKLTGNIYLGRIERVVNALDALFVN 57 Query: 61 YGGNRHGFLPFLEIHPDYY 79 G ++GFL F ++ Y+ Sbjct: 58 IGTKKNGFLRFKDVPEKYF 76 >gi|75763217|ref|ZP_00742978.1| Ribonuclease G [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902975|ref|ZP_04067115.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 4222] gi|74489291|gb|EAO52746.1| Ribonuclease G [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856651|gb|EEN01171.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis IBL 4222] Length = 463 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 105/410 (25%), Positives = 189/410 (46%), Gaps = 21/410 (5%) Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 I Q +LVQ+VKE KG +T + G+Y V MP + N Sbjct: 75 CYRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPFDEMRAVSRKIKNNK---- 130 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 131 -KRQQLLQIEVEGTGGYIFRSASEKGAIEEIQAEMQMLQQLYEELKRKEGQGKAPLLLHR 189 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + R ++ + I +++V +E ++ + S+ Y + +F G Sbjct: 190 PATFLDRVFQENPIETIEKVVVDTRSIVKELEENIGKEKVSF------YNEKSSMFNHFG 243 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 IE +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEI Sbjct: 244 IEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEI 303 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+ Sbjct: 304 ARQLRLRDIGGMILIDFINMKRREDKEMVRECLMAAMQNDRTYTRVLGFTELGILEMTRK 363 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R + S+ + + C CK GY+ S ++A + R + Y +++ D+ Sbjct: 364 RKKHSLRDVLLEECVPCKATGYMMSYETIAYELERELITYGNIED-EAVLIAAPKDLQKQ 422 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 L E + I + + I + +V + Sbjct: 423 FLQ------KELQKNIPFEIYFKDD---MIEKYAIVRFGSKTEIVERKNS 463 Score = 81.6 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY ++ R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSCY 76 >gi|228923199|ref|ZP_04086489.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836405|gb|EEM81756.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 462 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A +I+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGEIEKIQAEMQRLQQLYEELKRKESQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|229071955|ref|ZP_04205165.1| Ribonuclease, Rne/Rng [Bacillus cereus F65185] gi|228711114|gb|EEL63079.1| Ribonuclease, Rne/Rng [Bacillus cereus F65185] Length = 462 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 195/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQGLQQLYEELKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ +V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKENVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGSIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|311114204|ref|YP_003985425.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019] gi|310945698|gb|ADP38402.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019] Length = 1176 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 216/426 (50%), Gaps = 11/426 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E + S + + V+ + + + + Sbjct: 584 DRLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 643 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + ++ K +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 644 QARNGVLYAGEVNWDTTRLEGQPRRMELAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAG 703 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + +SRK+++ + P MG+I+RTA ++ I++D Sbjct: 704 RFLVLVPSGAMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGIIIRTAADGASEDAIEKD 760 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L++ W+ + + P L+ E ++ R +RD++ D ++IV G+ Y Sbjct: 761 LESLVKQWERIEAKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRI 820 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++++ P + ++ F + I+ QL + +V LP+ G ++I++TE Sbjct: 821 CEYLEMMAPDLRSKIEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 880 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 881 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 940 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C CKG G+I Sbjct: 941 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 1000 Query: 497 SSVALS 502 S Sbjct: 1001 EPTVSS 1006 Score = 86.2 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 596 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 655 Query: 75 HPD 77 + D Sbjct: 656 NWD 658 >gi|154248834|ref|YP_001409659.1| ribonuclease [Fervidobacterium nodosum Rt17-B1] gi|154152770|gb|ABS60002.1| ribonuclease, Rne/Rng family [Fervidobacterium nodosum Rt17-B1] Length = 463 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 220/473 (46%), Gaps = 18/473 (3%) Query: 94 NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153 + +A A + +G + +E + N E+ I + V +D Sbjct: 6 KKDGENEKAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKLPDDEN 65 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 K + ++ Q +LVQI KE KG VTT + + GRY V MP Sbjct: 66 AFLRIKDIKNEYLNFFGISKLQECQKILVQIKKEGGNTKGPQVTTNIGIPGRYIVYMPF- 124 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 SK ISRKITN DRK+L+E+ L+ G ILRT+ + I+++ E L + W+ Sbjct: 125 SKSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEYIEKEAEELHKKWE 184 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + S L+++E + + +R+ K++ ++I + +K +K++ + Sbjct: 185 EIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNSQK--------LKVISKDFK 236 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 + F + Q+ + + LPS G ++I++TEAL IDVNSG T Sbjct: 237 PNIPVKLIESDPFEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEALTIIDVNSGHYTSSE 296 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 E+ + + N+EAA+EI R +RLR++ G+I++DFIDM+ ++N + +K KD+ + Sbjct: 297 SHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEILNAIKSETLKDKNK 356 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 ++V + GLLEM+R+R S+ E T +C C G G++ S V +L+ V+ Sbjct: 357 IEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHVMSPKFVIERLLKEVKNKP-- 414 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 A +I+ H + ++ F V I++ L + + I Sbjct: 415 KNAKEVIIKFHPSLKEFINKDL------LRKTFKVPIHIHF-THLDPESYEIT 460 Score = 65.4 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 ++ + + E+ + ++ I GNIY+ K+ + P+L+AAFV + + FL +I + Sbjct: 17 ALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKLPDDENAFLRIKDIKNE 76 Query: 78 Y 78 Y Sbjct: 77 Y 77 >gi|229087009|ref|ZP_04219163.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-44] gi|228696272|gb|EEL49103.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-44] Length = 463 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 113/409 (27%), Positives = 200/409 (48%), Gaps = 21/409 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 + Q LLVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRVHEGQALLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNYK---- 130 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ ++V G I R+A + E++ + +YL L++ ++ AP L++ Sbjct: 131 KRQELMDIQVEGTGGFIFRSACEKGSVSEVQSEMKYLQELFEKLKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + IS++++ +E +D + + V + + +F G+ Sbjct: 191 ETFLDRVFQENPVESISKVVIDSHTILKEVEDKVG------SDKVMLHNEKTSMFDHYGV 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+II Q E + IDVN+G+ T + ++DT LQTN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGSYLIIEQMETMTVIDVNTGKFTGKQNLQDTVLQTNEIAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M++++N V +KL SL+ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKRENKEKVREKLIFSLQGDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C +CK GY+ S ++A + R + Y +++ +V Sbjct: 365 KKHSLRDVLLEDCLHCKTTGYVLSNETIAYELERELITY-KHVEDEAVLIAAPKEVQKIF 423 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 L E I + + I + + ++N + Sbjct: 424 LQ------KELPKNIPFQIYFTDEK---AEKYAIIRFGTKKEMLNRKNS 463 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV V D + EL ++ ++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYINYT-GSEKRVAVEEDQEIVELLWKRNEAQEIVGHIYVGRVVRTLAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEI 74 +H +L + ++ Sbjct: 61 LEKHAYLSYDDV 72 >gi|228993185|ref|ZP_04153106.1| Ribonuclease, Rne/Rng [Bacillus pseudomycoides DSM 12442] gi|228999235|ref|ZP_04158815.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock3-17] gi|228760432|gb|EEM09398.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock3-17] gi|228766511|gb|EEM15153.1| Ribonuclease, Rne/Rng [Bacillus pseudomycoides DSM 12442] Length = 463 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 105/404 (25%), Positives = 189/404 (46%), Gaps = 21/404 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 + Q LLVQ+VKE KG +T + G+Y V MP + N Sbjct: 76 YRVHEGQALLVQVVKEAIDTKGPKLTANVEFTGKYVVYMPYDEMRAVSRKIKNNK----- 130 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ ++V G I R+A E++ + ++ L+ ++ + AP L++ Sbjct: 131 KRQQLLEIQVEGTGGYIFRSACDKGAIDEVQIEMQHFQDLYKELKRKEEHGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I ++IV E +D + S+ Y + +F G+ Sbjct: 191 ATFLDRVFKENPIETIEKVIVDTRSIVPELQDKVGKEKVSF------YNETTSMFIHYGV 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V L + Y+II Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLSNGSYLIIEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEIAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M++++N V ++L SL++DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKEENKEKVRERLISSLQRDRTYTRVLRFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + C+ C+ GY+ S S+A + R + Y +I + ++L Sbjct: 365 KKHSLRDVLLDDCSACQATGYVMSHESIAYELERELVTYSSSEDEAVLIAASKEVQKIFL 424 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 E + + + + I + Q ++ Sbjct: 425 Q-------KELQKNIPFQVYFTDEE---AEKYAIIRFGTRQEMM 458 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV V ++ EL ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYINYT-GSEKRVAVEEKQKIVELLWQRNQEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|283783663|ref|YP_003374417.1| S1 RNA binding domain protein [Gardnerella vaginalis 409-05] gi|283441778|gb|ADB14244.1| S1 RNA binding domain protein [Gardnerella vaginalis 409-05] Length = 1093 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 119/426 (27%), Positives = 222/426 (52%), Gaps = 13/426 (3%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + L+ + +V +D + + + + V I + S+ +A D+ Sbjct: 519 ERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIG 578 Query: 147 SNVEDV--KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 V G D+ + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 579 QARNGVLYAGEVNWDMARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 638 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ +SRK+++ + P MGVI+RTA ++ I++D Sbjct: 639 RFLVLVPSGGMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGVIIRTAADGASEESIEKD 695 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + L++ W+ + + P L+ E ++ R +RD++ D ++IV GE + Sbjct: 696 LDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRI 755 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++++ P V ++ F + I+ QL + +V LP+ G ++I++TE Sbjct: 756 DEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 815 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 816 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 875 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C CKG G+I Sbjct: 876 DLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 935 Query: 497 SSVALS 502 S Sbjct: 936 EPTVSS 941 Score = 84.6 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL ++ V PS++AAFVD G R+G L E+ Sbjct: 531 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV 590 Query: 75 HPD 77 + D Sbjct: 591 NWD 593 >gi|218899614|ref|YP_002448025.1| ribonuclease, Rne/Rng family [Bacillus cereus G9842] gi|218545527|gb|ACK97921.1| ribonuclease, Rne/Rng family [Bacillus cereus G9842] Length = 462 Score = 184 bits (465), Expect = 6e-44, Method: Composition-based stats. Identities = 105/409 (25%), Positives = 187/409 (45%), Gaps = 21/409 (5%) Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 I Q +LVQ+VKE KG +T + G+Y V MP + N Sbjct: 75 CYRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMPFDEMRAVSRKIKNNK---- 130 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 131 -KRQQLLQIEVEGTGGYIFRSASEKGAIEEIQAEMQMLQQLYEELKRKEGQGKAPLLLHR 189 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 + R ++ + I +++V +E + + S+ Y + +F G Sbjct: 190 PATFLDRVFQENPIETIEKVVVDTRSIVKELEGKIGKEKVSF------YNEKSSMFNHFG 243 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 IE +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEI Sbjct: 244 IEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEI 303 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+ Sbjct: 304 ARQLRLRDIGGMILIDFINMKRREDKEMVRECLMAAMQNDRTYTRVLGFTELGILEMTRK 363 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R + S+ + + C CK GY+ S ++A + R + Y +++ D+ Sbjct: 364 RKKHSLRDVLLEECVPCKATGYMMSYETIAYELERELITYGNIED-EAVLIAAPKDLQKQ 422 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + +V Sbjct: 423 FLQ------KELQKNIPFEIYFKDD---MIEKYAIVRFGSKTEIVERKK 462 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY ++ R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSCY 76 >gi|237737607|ref|ZP_04568088.1| ribonuclease G and E [Fusobacterium mortiferum ATCC 9817] gi|229419487|gb|EEO34534.1| ribonuclease G and E [Fusobacterium mortiferum ATCC 9817] Length = 488 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 138/482 (28%), Positives = 255/482 (52%), Gaps = 28/482 (5%) Query: 74 IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133 I+ D +Q R A++++ + + E + + ++ ++ A + Sbjct: 6 INIDEFQ----SRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNIGL 61 Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193 E+ + + V D++ + + + I++++ ++VQ++ E RG KG Sbjct: 62 EKNAFL--------YVNDLREFEEKYLDGICNSERPIEDILTVGDEVVVQVLSEPRGTKG 113 Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253 A VTT+ ++ G+Y VLMPN + IS+KI +R L+EI R L+ MGVI+RTA Sbjct: 114 ARVTTHYTIPGKYLVLMPNNNH-IAISKKIKEEEERNRLEEIVRDLKPE-NMGVIIRTAA 171 Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVS 313 ++ +R+ EYL++ W+++ + + ++Y++ ++ +RD++ +I E+++ Sbjct: 172 QGKSIFHFEREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVID 231 Query: 314 GEKGYREAKDFMKLLMPS--YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371 E+ Y E D++ +I +D IF R GIE ++++ + EV L GY+ Sbjct: 232 NEEVYWEVIDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYL 291 Query: 372 IINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431 +I +TEAL+SIDVN+G++T + +E T L TNLEAA EI RQLRLR+L G+I++DFIDM Sbjct: 292 VIQKTEALISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMR 351 Query: 432 EKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 +++ V + L+++L KDR + + ++ GL+EM+R+R + + C C+G G Sbjct: 352 LEEDKLKVLEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTG 411 Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD------------VVLYLLNQKRATI 539 I+S+ SV ++ ++E + I V V ++ N+K+ I Sbjct: 412 KIKSKDSVIHEMMTEIKECAKDEDINIIKVILSKKLKIAFKELYFDFVEDFVKNRKKKII 471 Query: 540 VE 541 +E Sbjct: 472 LE 473 Score = 92.0 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+++I+ ++R ++ D +V E+ E E +++I NIY KV V P +++AFV+ G Sbjct: 2 NQIVINIDE-FQSRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNIG 60 Query: 63 GNRHGFLPFLEI 74 ++ FL ++ Sbjct: 61 LEKNAFLYVNDL 72 >gi|327398514|ref|YP_004339383.1| ribonuclease, Rne/Rng family [Hippea maritima DSM 10411] gi|327181143|gb|AEA33324.1| ribonuclease, Rne/Rng family [Hippea maritima DSM 10411] Length = 468 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 189/393 (48%), Gaps = 15/393 (3%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + Q ++VQ++K KG V+ +++ G Y VL+ +S+ I++ K L++ Sbjct: 87 RENQEVMVQVLKPTVSAKGPKVSLNITIPGNYLVLLKGVD-FVGVSKHISDKQKNKELRD 145 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L+ +G I RTA + E++ + +L ++ + + + AP L+YEE L Sbjct: 146 MLSSLKED-DIGFIARTASRFASLEELEFEAHHLKKIARQIDKRYETAKAPSLIYEEPQL 204 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + IR+ + EII + +++ +++ + + V+ Y PIF GIE + Sbjct: 205 PLKVIREYCDDNTDEIIFDDIETFKKTTSYLQEMYNACKNKVKFYNGDKPIFEFFGIEDE 264 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH-CIEDTALQTNLEAAEEIARQ 413 + L V L S GY+II +TEA +IDVN+G ED + NLEAA E+ Q Sbjct: 265 IRQLQNNVVHLKSGGYLIIEKTEAFFAIDVNAGSYHYRDYNAEDAIFKVNLEAAYEVFNQ 324 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 + LRDL GLI+VDFIDM +++ + +E L + K D+ + V +S G++E+SR++ Sbjct: 325 INLRDLGGLIIVDFIDMNSQEHKKKIEDVLYKLAKDDKRKTYVSKMSELGVVEISRRKNN 384 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 + + + + C C G ++S S + I + + + V+ L Sbjct: 385 TDIFDEMFEKCPDCYNGGLVKSTSFICSEI----YQKIKYSKKKKFRLKATPGVIEQLRK 440 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 V++E + I+ I + + +E Sbjct: 441 Y-----VQFEDK---KIDYKISGSCNAEEYVLE 465 Score = 57.3 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK--QIKGNIYLAKVTRVEPSLQAAF 58 M ++LI +S + + + + + + K I GN+Y + V L AAF Sbjct: 1 MT-RLLI-SSDPFILKAAKIEQDNLTVFVMKRKDKSASSIVGNVYKGIIENVAIQLGAAF 58 Query: 59 VDYGGNRHGFL 69 V+ G +++ FL Sbjct: 59 VNIGLDKNAFL 69 >gi|218508583|ref|ZP_03506461.1| ribonuclease, Rne/Rng family protein [Rhizobium etli Brasil 5] Length = 257 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 85/166 (51%), Positives = 103/166 (62%), Gaps = 4/166 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 YGGNRHGFL F EIHPDYYQIP +DRQALL+ + +DV H + D S Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAE----AEEHRRDEDVEHVETAPMVDLST 116 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKR 166 ++ + E ++ + + +R Sbjct: 117 QDQPDVGIVPAEVPAPVAVADEPAPAAEAAPATAEEAPAKKARPRR 162 >gi|229006781|ref|ZP_04164414.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock1-4] gi|228754403|gb|EEM03815.1| Ribonuclease, Rne/Rng [Bacillus mycoides Rock1-4] Length = 463 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 105/404 (25%), Positives = 189/404 (46%), Gaps = 21/404 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 + Q LLVQ+VKE KG +T + G+Y V MP + N Sbjct: 76 YRVHEGQALLVQVVKEAIDTKGPKLTANVEFTGKYVVYMPYDEMRAVSRKIKNNK----- 130 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ ++V G I R+A E++ + ++ L+ ++ + AP L++ Sbjct: 131 KRQQLLEIQVEGTGGYIFRSACDKGAIDEVQIEMQHFQDLYKELKRKEEHGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I ++IV E +D + S+ Y + +F G+ Sbjct: 191 ATFLDRVFKENPIETIEKVIVDTRSIVPELQDKVGKEKVSF------YNETTSMFIHYGV 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V L + Y+II Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLSNGSYLIIEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEIAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M++++N V ++L SL++DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKEENKEKVRERLISSLQRDRTYTRVLRFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + C+ C+ GY+ S S+A + R + Y +I + ++L Sbjct: 365 KKHSLRDVLLDGCSACQATGYVMSHESIAYELERELVTYSSSEDEAVLIAASKEVQKIFL 424 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 E + + + + I + Q ++ Sbjct: 425 Q-------KELQKNIPFQVYFTDEE---AEKYAIIRFGTRQEMM 458 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV V ++ EL ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYINYT-GSEKRVAVEEKQKIVELLWQRNQEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|229180722|ref|ZP_04308060.1| Ribonuclease, Rne/Rng [Bacillus cereus 172560W] gi|228602700|gb|EEK60183.1| Ribonuclease, Rne/Rng [Bacillus cereus 172560W] Length = 462 Score = 183 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 193/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG + + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAILVQVVKEAIDTKGPKLKANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +E+ G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEIEGTGGYIFRSASEKGAIEEIQAEMQELQQLYEELKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E +D + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEDKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTIIDVNTGKFTGKQNLQDTVLRTNEMAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKKREDKEKVRECLIAAMQDDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + K C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLKECVPCKATGYVMSHETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDDN---IEKYAIVRFGSKKEIVERKK 462 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY+ +V R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|229019670|ref|ZP_04176478.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1273] gi|229025907|ref|ZP_04182302.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1272] gi|228735410|gb|EEL86010.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1272] gi|228741633|gb|EEL91825.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1273] Length = 469 Score = 183 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 83 YRIHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 138 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A T EI+ + + L +L++ ++ AP L++ Sbjct: 139 -RQQLLEIEVKGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEEQGKAPLLLHRP 197 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 198 ATFLDRVFQENPIETIEKVVVDTRSVVKELEEKVGEERVSF------YNEKSSMFNHFGI 251 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 252 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEAAAEEIA 311 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +L+ DR +V + G+LEM+R+R Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRESLMLALQDDRTYTRVLGFTELGILEMTRKR 371 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 372 KKHSLRDVVLEECVPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 424 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 + QK E + I + + I + + +V Sbjct: 425 ILQKHFLQKELQKNLPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV + ++ EL ++ +++I G+IY+ ++ R + AAFV+ G Sbjct: 9 KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 68 LEKHAYLSYDDVPSSY 83 >gi|229117947|ref|ZP_04247308.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-3] gi|228665518|gb|EEL20999.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock1-3] Length = 457 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQTEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E +D + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSVVKELEDKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V L + Y+I+ Q E + IDVN+G+ T + ++DT L+TN AA+EIA Sbjct: 240 EREIEKALQKIVWLQNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAADEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKKREDKEKVREGLIAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ D+ Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPQDLQKQF 418 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + +V Sbjct: 419 LQ------KELQKNIPFEIYFKDD---TIEKYAIIRFGSKKEIVERKK 457 Score = 80.8 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + N++ E ++ +++I G IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKNKIVEFLWKRNEEQEIVGYIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|49480672|ref|YP_038496.1| ribonuclease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332228|gb|AAT62874.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 462 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 196/408 (48%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I ++IV +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + +V Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKTEIVERKK 462 Score = 83.9 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSSY 76 >gi|229163402|ref|ZP_04291353.1| Ribonuclease, Rne/Rng [Bacillus cereus R309803] gi|228619971|gb|EEK76846.1| Ribonuclease, Rne/Rng [Bacillus cereus R309803] Length = 457 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPF-DEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A T EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQELLQIEVEGTGGYIFRSASEKGTIEEIQAEMQRLQQLYEELKRKESQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEIAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ K++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRKEDKEKVRECLIAAMQGDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 412 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + ++ Sbjct: 413 NLQKKFLQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 457 Score = 82.7 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWQRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + P Y Sbjct: 67 VPPSY 71 >gi|50725997|dbj|BAD33523.1| putative endoribonuclease E [Oryza sativa Japonica Group] Length = 898 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 99/471 (21%), Positives = 185/471 (39%), Gaps = 63/471 (13%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ++I++S R+ VL D ++ EL E +IYL VT++ P + AFVD G + Sbjct: 415 IVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTKLVPHMGGAFVDIGLS 474 Query: 65 RHGFLPFLEIHPD---YYQIPF-------------SDRQALLKESNIAQTDSEAVADDVT 108 R + + + D Y QI D ++ + TD E ++ Sbjct: 475 RPSLMSIKQ-NRDPFVYPQIVKNAKRDSANFSDYNDDSLPTYEDEDDDMTDGELADEEND 533 Query: 109 HGDVTIPNDHSLEEVA-------------------------------PIANFSQETEEES 137 P + E + E E+ Sbjct: 534 DESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEEKDDEIDDHMEDEYNEDL 593 Query: 138 IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT 197 + ++V ++++ + ++ ++VQ+VKE G+KG ++ Sbjct: 594 LPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQVVKEGLGSKGPTLS 653 Query: 198 TYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRT 257 + L R+ +L+ + +S+KIT + + L P G + RT A + Sbjct: 654 PFPCLRSRFWILV-SRGNKVGVSKKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHS 710 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPH----------LVYEEGNLIKRAIRDLYCKDI 307 E+++D + L+ W + E A ++ +++ ++D + + + Sbjct: 711 WEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNEKV 770 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 ++V + Y E ++++ + P V YE PIF IE ++D++ V L + Sbjct: 771 KRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHN 830 Query: 368 RGYVIINQTEALVSIDVNSGRST--REHCIEDTALQTNLEAAEEIARQLRL 416 G ++I QTEALVSIDVN G S + E L+ NLEAA+++ Sbjct: 831 GGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQVCPMFCF 881 >gi|229032097|ref|ZP_04188078.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1271] gi|228729237|gb|EEL80233.1| Ribonuclease, Rne/Rng [Bacillus cereus AH1271] Length = 457 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + V Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGK------EKVAFYNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEAAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L ++K DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLLAAMKNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGDIEDEAVL-------IAAPK 412 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + + +V Sbjct: 413 ELQKQFLQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + N++ E ++ +++I G+IY+ +V R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKNKIVEFLWKRNEEQEIVGHIYVGRVVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|52141060|ref|YP_085769.1| ribonuclease [Bacillus cereus E33L] gi|51974529|gb|AAU16079.1| ribonuclease, Rne/Rng family [Bacillus cereus E33L] Length = 463 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 109/409 (26%), Positives = 194/409 (47%), Gaps = 21/409 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEDQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSLFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQIDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 QK+ E + I + + I + + +V + Sbjct: 418 ELQKQFLQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKNS 463 Score = 83.9 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSSY 76 >gi|229175119|ref|ZP_04302635.1| Ribonuclease, Rne/Rng [Bacillus cereus MM3] gi|228608255|gb|EEK65561.1| Ribonuclease, Rne/Rng [Bacillus cereus MM3] Length = 457 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 191/408 (46%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ + V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALRKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ ++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRSEDKEKVRECLMAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 360 KKHSLRDVLLEECVSCKATGYVMSYETIAYELERELITYGNIEDEAVL-------IAAPK 412 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ E + I + + I + +V Sbjct: 413 ELQKQFLQKELQKNIPFEICFKDD---MIEKYAIVRFGSKTEIVERKK 457 Score = 80.8 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|229098919|ref|ZP_04229854.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-29] gi|228684417|gb|EEL38360.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-29] Length = 457 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 195/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQTEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E +D + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSVVKELEDKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V L + Y+I+ Q E + IDVN+G+ T + ++DT L+TN AA+EIA Sbjct: 240 EREIEKALQKIVWLQNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAADEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V ++L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKKREDKEKVRERLIAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ D+ Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPQDLQKQF 418 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + +V Sbjct: 419 LQ------KELQKNIPFEIYFKDD---TIEKYAIIRFGSKKEIVERKK 457 Score = 80.8 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + N++ E ++ +++I G IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKNKIVEFLWKRNEEQEIVGYIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|308234919|ref|ZP_07665656.1| ribonuclease G [Gardnerella vaginalis ATCC 14018] Length = 1137 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 216/426 (50%), Gaps = 11/426 (2%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E + S + + V+ + + + + Sbjct: 555 DRLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG 614 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + ++ K +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 615 QARNGVLYAGEVNWDTTRLEGQPRRMELAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAG 674 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + +SRK+++ + P MG+I+RTA ++ I++D Sbjct: 675 RFLVLVPSGAMTG-VSRKLSDRERSR--LRAIVSKIAPKDMGIIIRTAADGASEDAIEKD 731 Query: 265 FEYLMRLWDNVRELAL---NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L++ W+ + + P L+ E ++ R +RD++ D ++IV G+ Y Sbjct: 732 LESLVKQWERIEAKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRI 791 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++++ P + ++ F + I+ QL + +V LP+ G ++I++TE Sbjct: 792 CEYLEMMAPDLRSKIEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTE 851 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 A+ +IDVN+GR R +E+T + NLEA+EEIARQLRLRD+ G++++D++DM N Sbjct: 852 AMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR 911 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 V ++L E L +DR + QV +++ GL++M+R+R+ ++E+ ++ C CKG G+I Sbjct: 912 DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHD 971 Query: 497 SSVALS 502 S Sbjct: 972 EPTVSS 977 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 567 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 626 Query: 75 HPD 77 + D Sbjct: 627 NWD 629 >gi|229105083|ref|ZP_04235734.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-28] gi|228678264|gb|EEL32490.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-28] Length = 457 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 195/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLEIEVEGTGGYIFRSASEKGEIEEIQTEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E +D + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSVVKELEDKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V L + Y+I+ Q E + IDVN+G+ T + ++DT L+TN AA+EIA Sbjct: 240 EREIEKALQKIVWLQNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEMAADEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+++++ V ++L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKKREDKEKVRERLIAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ D+ Sbjct: 360 KKHSLRDVLLEECVPCKATGYVMSYETIAYELERELITYGNIED-EAVLIAAPQDLQKQF 418 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + +V Sbjct: 419 LQ------KELQKNIPFEIYFKDD---TIEKYTIIRFGSKKEIVERKK 457 Score = 82.3 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + N++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKNKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|237785940|ref|YP_002906645.1| ribonuclease E [Corynebacterium kroppenstedtii DSM 44385] gi|237758852|gb|ACR18102.1| ribonuclease E [Corynebacterium kroppenstedtii DSM 44385] Length = 1258 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 144/608 (23%), Positives = 254/608 (41%), Gaps = 45/608 (7%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 G + RQ I++ +K +LVQ+ K+ G+KG +T+++SLAGRY V +P Sbjct: 490 GDIDWRHTRHTGRQRKIEKALKPGDPILVQVTKDSVGHKGPRLTSHISLAGRYLVYVP-E 548 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + +SRK+ P ++ K A +P G I+RTA +I RD +WD Sbjct: 549 GRAHGVSRKLPEPERKRLKK--AVSGILPDEGGAIIRTAAEGVDTEDIARDVRRQQNVWD 606 Query: 274 NVREL------------------------------ALNSVAPHLVYEEGNLIKRAIRDLY 303 + E + P ++EE NL+ + +RDL+ Sbjct: 607 TILEKADELRTLPGSQASSGKGSGKKNSKGGKKGSKPHFDGPQTLHEEPNLLVKVVRDLF 666 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYA----RIVRQYEDPHPIFFRSGIEVQLDSLH 359 +D E+IV G + + ++ + P + RQ D F GI+ QL Sbjct: 667 NEDFDELIVDGGRSWSMVSSYIHRIAPDLEEKLSKYERQDHDGQDAFGHWGIDKQLKQAL 726 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRD 418 V LPS G ++I +TEA+ IDVN+GR T +E+T + NLEAA+EI RQ+RLRD Sbjct: 727 DRVVFLPSGGTLVIEKTEAMTVIDVNTGRFTGSSGSLEETVTRNNLEAADEIVRQMRLRD 786 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + G+IVVDFIDM ++N V ++L E+L KDR R Q+G +++ GL++++R+R+ ++E Sbjct: 787 IGGMIVVDFIDMVLEENQELVLRRLSEALAKDRTRHQLGEVTSLGLVQITRKRLGKGLVE 846 Query: 479 STTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT 538 + + C+ C G G+I + +L S ++ + + + +D+ Y + Sbjct: 847 TFSTPCSECHGRGFIVHDDPI---LLSSTDDDESDDDSAALQDNVDNDLPEYSFDDDTDD 903 Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 + + S + + +G + S+ Q S + Sbjct: 904 HADDTSSDSTSGDSKNDRSKGGRSGGGRSKKDHAGKGGSGKQGHSEKQGDSEEATTRRRS 963 Query: 599 QDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +E ED + ++ + A D+ +G + Sbjct: 964 IEEIAAAAVILADDEDPDEPSGADYLPAAQDSRSGGDDADNASAGDNGSSGDKDGRPRRR 1023 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVK 714 + + + + E+ + + T P+ ++ S D + Sbjct: 1024 RRRKTTRSSRSQHEEQVKADHTESDGAKTNPPENATKRDEETAHHPDADADKGSGDKTTR 1083 Query: 715 KTRWWKRR 722 + RR Sbjct: 1084 GKKQRGRR 1091 Score = 82.7 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T+V ++ D+++ E SE + + GNIYL +V V S++AAFVD G +R+G + +I Sbjct: 433 TQVAIMEDDQLVEHFVTSERTRTLVGNIYLGRVQNVLASMEAAFVDIGTDRNGVIYSGDI 492 >gi|49187338|ref|YP_030590.1| ribonuclease [Bacillus anthracis str. Sterne] gi|165871964|ref|ZP_02216605.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0488] gi|167636211|ref|ZP_02394515.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0442] gi|167640697|ref|ZP_02398957.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0193] gi|170688683|ref|ZP_02879888.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0465] gi|177654002|ref|ZP_02936043.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0174] gi|190566872|ref|ZP_03019788.1| ribonuclease, Rne/Rng family [Bacillus anthracis Tsiankovskii-I] gi|227817226|ref|YP_002817235.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. CDC 684] gi|229601191|ref|YP_002868730.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0248] gi|254687064|ref|ZP_05150922.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str. CNEVA-9066] gi|254736550|ref|ZP_05194256.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str. Western North America USA6153] gi|254741588|ref|ZP_05199275.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str. Kruger B] gi|254754814|ref|ZP_05206849.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str. Vollum] gi|254757646|ref|ZP_05209673.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str. Australia 94] gi|270000531|ref|NP_846891.2| ribonuclease [Bacillus anthracis str. Ames] gi|49181265|gb|AAT56641.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. Sterne] gi|164712254|gb|EDR17790.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0488] gi|167511269|gb|EDR86655.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0193] gi|167528432|gb|EDR91200.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0442] gi|170667369|gb|EDT18127.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0465] gi|172081057|gb|EDT66135.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0174] gi|190561863|gb|EDV15832.1| ribonuclease, Rne/Rng family [Bacillus anthracis Tsiankovskii-I] gi|227006547|gb|ACP16290.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. CDC 684] gi|229265599|gb|ACQ47236.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. A0248] gi|269850239|gb|AAP28377.2| ribonuclease, Rne/Rng family [Bacillus anthracis str. Ames] Length = 463 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 108/409 (26%), Positives = 195/409 (47%), Gaps = 21/409 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELLTYGNIED-EAVLISAPKELQKQF 423 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 L E + I + + I + + +V + Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKNS 463 Score = 80.8 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSAY 76 >gi|229158062|ref|ZP_04286132.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 4342] gi|228625381|gb|EEK82138.1| Ribonuclease, Rne/Rng [Bacillus cereus ATCC 4342] Length = 457 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 193/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I ++IV +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ + + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +I T +L Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISATKELQKQFL 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + +V Sbjct: 420 K-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|254724626|ref|ZP_05186409.1| ribonuclease, Rne/Rng family protein [Bacillus anthracis str. A1055] Length = 462 Score = 182 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELLTYGNIED-EAVLISAPKELQKQF 423 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + +V Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 80.8 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSAY 76 >gi|218905640|ref|YP_002453474.1| ribonuclease, Rne/Rng family [Bacillus cereus AH820] gi|218537839|gb|ACK90237.1| ribonuclease, Rne/Rng family [Bacillus cereus AH820] Length = 462 Score = 182 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GYI S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYIMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 423 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + +V Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSAY 76 >gi|228917084|ref|ZP_04080642.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842502|gb|EEM87592.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 462 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 423 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + +V Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 80.4 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSAY 76 >gi|42783583|ref|NP_980830.1| ribonuclease [Bacillus cereus ATCC 10987] gi|42739512|gb|AAS43438.1| ribonuclease, Rne/Rng family [Bacillus cereus ATCC 10987] Length = 462 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YHIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP LV+ Sbjct: 132 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLVHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ + + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELISYGNIED-EAVLISAPKELQKQF 423 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + ++ Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIEXKK 462 Score = 80.8 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSSY 76 >gi|90994402|ref|YP_536892.1| RNase E [Porphyra yezoensis] gi|122244629|sp|Q1XDS6|RNE_PORYE RecName: Full=Ribonuclease E homolog; Short=RNase E gi|90818966|dbj|BAE92335.1| RNase E [Porphyra yezoensis] Length = 509 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 173/328 (52%), Gaps = 5/328 (1%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 KK I ++ RQ +LVQI+KE NKG +T ++L+GRY VLMP S+ ISR Sbjct: 74 KKKYYVNNITNILTIRQKILVQIIKEPTLNKGPRLTANITLSGRYIVLMPF-SQSICISR 132 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + +R LK L PA MG++ R + + I + + L W+ V++ A+N Sbjct: 133 KIYDEDERHYLKS-LAILIKPATMGLLFRPSAVGVDEEIILSELKNLKEQWNFVQKSAIN 191 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY---ARIVRQ 338 S +P L+Y++ +++K+ IRD Y + + I++ G ++ ++ + ++ Sbjct: 192 SYSPVLLYKDEDIVKKVIRDFYNNNTNNIVIDSNLGLKQLNYYIHTWHCNNSSTVPKIKL 251 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y + I GI + +V L GY+ I EA IDVNSG +T Sbjct: 252 YSNNQCILDAFGINQAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGSFNNSTSARET 311 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 L+TN AA EIA QL++R++ G+I++DFIDME +++ + + + L D A+ Q+ Sbjct: 312 VLKTNCSAATEIAYQLQIRNITGVIIIDFIDMESQRDQLQLLEHFNKELSLDDAKPQIVQ 371 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTY 486 +S GL+E++R+R S+ E + Y Sbjct: 372 LSELGLVELTRRRQGKSLYELISSDSNY 399 Score = 55.0 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N ++I H +L ++++L + +IYL V ++ + AAF++ Sbjct: 1 MTNTIVISCLHNM---AAILYCGQIQKLVV--ANAHYQVSDIYLGCVDKIFSGINAAFIN 55 Query: 61 YGGNR-HGFLPFLEIHP---DYY 79 G N GF+ + P YY Sbjct: 56 LGKNEYSGFIHISDTGPLKKKYY 78 >gi|47566636|ref|ZP_00237458.1| cytoplasmic axial filament protein [Bacillus cereus G9241] gi|47556666|gb|EAL14998.1| cytoplasmic axial filament protein [Bacillus cereus G9241] Length = 457 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +IIV +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKIIVDTRSVVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVREYLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +I +L Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + +V Sbjct: 420 K-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|47529976|ref|YP_021325.1| ribonuclease [Bacillus anthracis str. 'Ames Ancestor'] gi|47505124|gb|AAT33800.1| ribonuclease, Rne/Rng family [Bacillus anthracis str. 'Ames Ancestor'] Length = 458 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 108/409 (26%), Positives = 195/409 (47%), Gaps = 21/409 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELLTYGNIED-EAVLISAPKELQKQF 418 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 L E + I + + I + + +V + Sbjct: 419 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKNS 458 Score = 80.4 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSAY 71 >gi|196039363|ref|ZP_03106669.1| ribonuclease, Rne/Rng family [Bacillus cereus NVH0597-99] gi|196029990|gb|EDX68591.1| ribonuclease, Rne/Rng family [Bacillus cereus NVH0597-99] Length = 462 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECALCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + + +V Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 82.3 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ ++++ G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEVVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSSY 76 >gi|225849251|ref|YP_002729415.1| ribonuclease G [Sulfurihydrogenibium azorense Az-Fu1] gi|225643933|gb|ACN98983.1| ribonuclease G [Sulfurihydrogenibium azorense Az-Fu1] Length = 470 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 120/401 (29%), Positives = 205/401 (51%), Gaps = 12/401 (2%) Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 + IK ++LVQ+ + KGA ++ LSL G++ VL+P +IS K + R+ Sbjct: 78 CKNIKKGSVILVQVKRSPVSTKGAKLSCKLSLPGKFLVLLPQNKGKVSISSKYEDQDVRE 137 Query: 231 NLKEIARGLE---VPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 +LK L P G+I+RT+ + T EI DF++L LW N+++ A AP + Sbjct: 138 SLKSRITNLIKDINPDNYGIIIRTSAINATDQEIIEDFKFLKELWSNIQKEAEKKKAPAI 197 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 +YEE IRD I + + + + +I + ++F Sbjct: 198 IYEEPFKAFTIIRDYAANFSEIISDDIKLLKQIKEFLNNNFPNNSIKITPYRKRKESLYF 257 Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAA 407 GI+ ++ + L S Y++I +TEALV IDVNSG ++ +E+TA + N EA Sbjct: 258 AYGIDKLINKILSPYAYLKSGSYLVIQETEALVVIDVNSGSCNKQKNLEETAFKINTEAV 317 Query: 408 EEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM 467 +EI RQ+RLRDLAG+I++DFIDM EK++ + + LKE KKD+ V++ ++ GL+E+ Sbjct: 318 KEIVRQIRLRDLAGIIIIDFIDMTEKEHKEKLLELLKEEFKKDKRPVKIKGLTQLGLVEL 377 Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 SR+++ S+++ ++ C C G GYIRS+ + + +++ + +I S Sbjct: 378 SRKKLEESIVKQLSQSCQTCYGKGYIRSEDILLFELEKTLLKAKPFVKLKLMINPKLSSG 437 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 V LL + + E+ + + ++ F +EK Sbjct: 438 VNQLL--ESLNLKEF-------VEIEYNNKMHIDKFEVEKV 469 Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M K++I + ++ ++L DN EL E + G+IY KV +++A FVD Sbjct: 1 MDRKLVI-TTGTKKIFYLILEDNVPVELKIEDIEISKQTGSIYKGKVLSYSSAMEAYFVD 59 Query: 61 YGGNRHGFLPFLEI 74 G ++ FLP +I Sbjct: 60 IGEDKEAFLPSKDI 73 >gi|228935765|ref|ZP_04098577.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823822|gb|EEM69642.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 457 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +I +L Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + +V Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSAY 71 >gi|228948160|ref|ZP_04110444.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811518|gb|EEM57855.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 457 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I ++IV +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 414 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + + +V Sbjct: 415 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|229093519|ref|ZP_04224621.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-42] gi|228689849|gb|EEL43654.1| Ribonuclease, Rne/Rng [Bacillus cereus Rock3-42] Length = 462 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------ISAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + + +V Sbjct: 418 ELQKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSAY 76 >gi|118479601|ref|YP_896752.1| ribonuclease [Bacillus thuringiensis str. Al Hakam] gi|196044728|ref|ZP_03111962.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB108] gi|225866427|ref|YP_002751805.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB102] gi|118418826|gb|ABK87245.1| ribonuclease, Rne/Rng family [Bacillus thuringiensis str. Al Hakam] gi|196024216|gb|EDX62889.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB108] gi|225790581|gb|ACO30798.1| ribonuclease, Rne/Rng family [Bacillus cereus 03BB102] Length = 462 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + + +V Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 83.1 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSSY 76 >gi|196034309|ref|ZP_03101718.1| ribonuclease, Rne/Rng family [Bacillus cereus W] gi|195992851|gb|EDX56810.1| ribonuclease, Rne/Rng family [Bacillus cereus W] Length = 462 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------ISAPK 417 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + + +V Sbjct: 418 ELQKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSAY 76 >gi|288871674|ref|ZP_06118545.2| cytoplasmic axial filament protein [Clostridium hathewayi DSM 13479] gi|288862484|gb|EFC94782.1| cytoplasmic axial filament protein [Clostridium hathewayi DSM 13479] Length = 403 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 3/305 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + ++VQ+ ++ K +T L+ GRY VL + S+ + ++ K + Sbjct: 90 RVGDEIVVQVERDAVKTKAPVLTGNLNFTGRYIVLTAGKRQLGFSSKL--SDMEWKKQIK 147 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 E G+I+RT + I + L L+ V A++ L+Y+ Sbjct: 148 PILEAEKEEDFGIIVRTNAPEASFDAILEELRSLKALYRKVMGDAVHRTCLSLLYQTPPA 207 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYEDPHPIFFRSGIEV 353 IRD + ++ Y K +++ P ++ + P+F +E Sbjct: 208 YLADIRDSLHGSLESVVTDEPDIYEAIKVYLETFQPEDLKKLTFYDDALLPLFKLFKVEK 267 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 +D V L S GY++I TEAL IDVN+G+ + + + DT ++ N EAA +IARQ Sbjct: 268 AMDEALGKRVWLKSGGYLVIEPTEALCVIDVNTGKYSGKKNLHDTIMKINTEAAVQIARQ 327 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L+G+I++DFIDME +++ + + L +L KD + V I+ L+E++R++IR Sbjct: 328 LRLRNLSGIIIIDFIDMETEEDRQELLTVLSRALSKDPVKTSVVEITKLNLVEVTRKKIR 387 Query: 474 SSVLE 478 E Sbjct: 388 RPFHE 392 Score = 61.5 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE--IH 75 V + L+ E ++ I GNIY+ KV + ++ AAFV+ G G+L + IH Sbjct: 20 VQSEGSAVSLNLEPGEERSILGNIYIGKVKNIVKNIGAAFVEIGDGCMGYLNLADGFIH 78 >gi|229123986|ref|ZP_04253178.1| Ribonuclease, Rne/Rng [Bacillus cereus 95/8201] gi|228659288|gb|EEL14936.1| Ribonuclease, Rne/Rng [Bacillus cereus 95/8201] Length = 457 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEERVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GYI S ++A + R + Y +I +L Sbjct: 360 KKYSLRDVLLEECAPCKATGYIMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + +V Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSAY 71 >gi|324328349|gb|ADY23609.1| ribonuclease E [Bacillus thuringiensis serovar finitimus YBT-020] Length = 462 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I + +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YHIHEGKAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + IF GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSIFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIMEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ + + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQNDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +I +L Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELISYGNIEDEAVLISAPKELQKQFL 424 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + ++ Sbjct: 425 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 462 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G Sbjct: 2 KTLYINYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSSY 76 >gi|163942194|ref|YP_001647078.1| ribonuclease [Bacillus weihenstephanensis KBAB4] gi|163864391|gb|ABY45450.1| ribonuclease, Rne/Rng family [Bacillus weihenstephanensis KBAB4] Length = 469 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 195/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 83 YRIHEGQAILVQVVKEAIDTKGPKLTAKIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 138 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ G+EV G I R+A T EI+ + + L +L++ ++ AP L+++ Sbjct: 139 -RQQLLGIEVEGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEDQGKAPLLLHQP 197 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E ++ + V Y + +F GI Sbjct: 198 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGK------ERVAFYNEKSSMFNHFGI 251 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 + +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT +TN AAEEIA Sbjct: 252 DREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVFRTNEMAAEEIA 311 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V ++L +L+ DR +V + G+LEM+R+R Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRERLMIALQDDRTYTRVLGFTELGILEMTRKR 371 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 372 KKHSLRDVLLEECAPCKATGYVISNETIAYELERELITYGNIEDEAVL-------IAASK 424 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK + E + I + + I + + +V Sbjct: 425 KVQKHFSQKELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469 Score = 86.2 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV + ++ EL ++ +++I G+IY+ ++ R + AAFV+ G Sbjct: 9 KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L F ++ Y Sbjct: 68 LEKHAYLSFDDVPSSY 83 >gi|206976100|ref|ZP_03237010.1| ribonuclease, Rne/Rng family [Bacillus cereus H3081.97] gi|217961935|ref|YP_002340505.1| ribonuclease, Rne/Rng family [Bacillus cereus AH187] gi|229141184|ref|ZP_04269723.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST26] gi|206745852|gb|EDZ57249.1| ribonuclease, Rne/Rng family [Bacillus cereus H3081.97] gi|217063348|gb|ACJ77598.1| ribonuclease, Rne/Rng family [Bacillus cereus AH187] gi|228642225|gb|EEK98517.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST26] Length = 462 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I + +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YHIHEGKAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP LV+ Sbjct: 132 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLVHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + IF GI Sbjct: 191 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSIFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ + + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 423 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + ++ Sbjct: 424 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 462 Score = 80.4 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSSY 76 >gi|218514553|ref|ZP_03511393.1| probable ribonuclease protein [Rhizobium etli 8C-3] Length = 290 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+KMLIDASH EETRVVV+R NR+EE DFES+HKKQI+GNIYLAKVTRVEPSLQAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALL--KESNIAQTDSEAVADDVTHGDVTIPNDH 118 YGGNRHGFL F EIHPDYYQIP +DRQALL + + + + D++ + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP 120 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQY 168 + V A +E +A D V V +P + + + Sbjct: 121 DVGIVPAEAPAPVAVADEPAPAAIADAVEAVPATAEEAPAKKARPRRSRK 170 >gi|228929491|ref|ZP_04092511.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830171|gb|EEM75788.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 457 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EIK + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIKAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +I +L Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + +V Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSAY 71 >gi|229198575|ref|ZP_04325277.1| Ribonuclease, Rne/Rng [Bacillus cereus m1293] gi|228584857|gb|EEK42973.1| Ribonuclease, Rne/Rng [Bacillus cereus m1293] Length = 457 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I ++IV +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ + + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKELQKQF 418 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 L E + I + + I + + ++ Sbjct: 419 LQ------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 457 Score = 83.1 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|229186687|ref|ZP_04313846.1| Ribonuclease, Rne/Rng [Bacillus cereus BGSC 6E1] gi|228596790|gb|EEK54451.1| Ribonuclease, Rne/Rng [Bacillus cereus BGSC 6E1] Length = 457 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGKIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y + + Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVL-------ISAPK 412 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + + +V Sbjct: 413 ELQKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 457 Score = 82.7 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|310658679|ref|YP_003936400.1| ribonuclease g [Clostridium sticklandii DSM 519] gi|308825457|emb|CBH21495.1| putative Ribonuclease g [Clostridium sticklandii] Length = 457 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 181/378 (47%), Gaps = 11/378 (2%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K LL+Q+ + NK +T LSL GRY V+ P K S +I + + LK Sbjct: 75 KKGDELLLQVKRPGIKNKMPKLTRELSLMGRYCVMFP-YGKDINFSNRIEDDSWKLELKA 133 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + + +G+++RT + ++ EIK D + L +W+ + + + + L+Y + + Sbjct: 134 YLKQ-SIGTSVGIVIRTLAYNVSESEIKSDIDKLFDIWNEIEKQSKLGLNNKLIYTQYDP 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I++ I + I ++I + ++ + ++ +K + +F + Q Sbjct: 193 IEQFIFKSNPESIDKLICNDKQLLKHIENSLKSKIQIITPTFID---TEFLFDYLKLTSQ 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + +L Q +V + + + + TEA IDVNSG + + E AL+ NL AA+E RQ+ Sbjct: 250 IRNLFQKKVEVNNNISLFVESTEACHIIDVNSGNANYKLGFEKNALEINLIAADEAVRQI 309 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 LRDL+G+I++DF+DM+E +N + K+ E LKKD + V +I+ G++++ R+R + Sbjct: 310 LLRDLSGIILIDFMDMKENQNKIKLINKVTELLKKDGKKSSVTSITELGIMQIIRKRDKE 369 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 ++ E TK C C G G + + + + + Y+LN+ Sbjct: 370 NIYERYTKSCPLCDGLGKVLTDELYFNQLFIELSNATKHTNQKQFKIKIP-----YILNE 424 Query: 535 -KRATIVEYEARFGVSIN 551 + + + E ++I Sbjct: 425 TTKQYLNDIENELNITIE 442 >gi|229013661|ref|ZP_04170790.1| Ribonuclease, Rne/Rng [Bacillus mycoides DSM 2048] gi|229062140|ref|ZP_04199464.1| Ribonuclease, Rne/Rng [Bacillus cereus AH603] gi|229169188|ref|ZP_04296902.1| Ribonuclease, Rne/Rng [Bacillus cereus AH621] gi|228614254|gb|EEK71365.1| Ribonuclease, Rne/Rng [Bacillus cereus AH621] gi|228717123|gb|EEL68799.1| Ribonuclease, Rne/Rng [Bacillus cereus AH603] gi|228747583|gb|EEL97457.1| Ribonuclease, Rne/Rng [Bacillus mycoides DSM 2048] Length = 469 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 106/408 (25%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + + G+Y V MP + N Sbjct: 83 YRIHEGQAILVQVVKEAIDTKGPKLTAKIEVTGKYVVYMPYDDMRAVSRKIKNNK----- 137 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ G+EV G I R+A T EI+ + + L +L++ ++ AP L+++ Sbjct: 138 RRQQLLGIEVEGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEDQGKAPLLLHQP 197 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E ++ + S+ Y + +F GI Sbjct: 198 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKERVSF------YNEKSSMFNHFGI 251 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 + +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT +TN AAEEIA Sbjct: 252 DREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVFRTNEMAAEEIA 311 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V ++L +L+ DR +V + G+LEM+R+R Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRERLMIALQDDRTYTRVLGFTELGILEMTRKR 371 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ V + Sbjct: 372 KKHSLRDVLLEECAPCKATGYVISNETIAYELERELITYGNIED-EAVLIGASKKVQKHF 430 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + +V Sbjct: 431 SQ------KELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469 Score = 86.6 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV + ++ EL ++ +++I G+IY+ ++ R + AAFV+ G Sbjct: 9 KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L F ++ Y Sbjct: 68 LEKHAYLSFDDVPSSY 83 >gi|301055953|ref|YP_003794164.1| ribonuclease, Rne/Rng family [Bacillus anthracis CI] gi|300378122|gb|ADK07026.1| ribonuclease, Rne/Rng family [Bacillus cereus biovar anthracis str. CI] Length = 462 Score = 180 bits (455), Expect = 9e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 197/408 (48%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 76 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 131 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 132 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEAQGKAPLLLHRP 190 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E ++ + S+ Y + +F GI Sbjct: 191 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 244 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 245 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 304 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 305 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMENDRTYTRVLGFTELGILEMTRKR 364 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ ++ Sbjct: 365 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIED-EAVLISAPKEL---- 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 QK+ + E + I + + I + + +V Sbjct: 420 --QKQFSQKELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIVERKK 462 Score = 80.4 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 12 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 71 Query: 74 IHPDY 78 + Y Sbjct: 72 VPSAY 76 >gi|222097892|ref|YP_002531949.1| ribonuclease, rne/rng family [Bacillus cereus Q1] gi|221241950|gb|ACM14660.1| ribonuclease, Rne/Rng family [Bacillus cereus Q1] Length = 457 Score = 180 bits (455), Expect = 9e-43, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I + +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YHIHEGKAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP LV+ Sbjct: 127 -RQQLLQIEVEGKGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLVHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + IF GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKISF------YNEKSSIFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ + + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +I +L Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + ++ Sbjct: 420 Q-------KELQKNIPFEIYFKDD---MIEKYAIIRFGSKKEIIERKK 457 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|229135271|ref|ZP_04264067.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST196] gi|228648196|gb|EEL04235.1| Ribonuclease, Rne/Rng [Bacillus cereus BDRD-ST196] Length = 469 Score = 180 bits (455), Expect = 9e-43, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 196/408 (48%), Gaps = 21/408 (5%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 83 YRIHEGQAILVQVVKEAIDTKGPKLTAKIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 138 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ G+EV G I R+A T EI+ + + L +L++ ++ AP L+++ Sbjct: 139 -RQQLLGIEVEGTGGYIFRSASEKGTIDEIQAEMQGLQQLYEELKRKEDQGKAPLLLHQP 197 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +I+V +E ++ + S+ Y + +F GI Sbjct: 198 ATFLDRVFQENPIETIEKIVVDTRSIVKELEEKVGKERVSF------YNEKSSMFNHFGI 251 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 + +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT +TN AAEEIA Sbjct: 252 DREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVFRTNEMAAEEIA 311 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V ++L +L+ DR +V + G+LEM+R+R Sbjct: 312 RQLRLRDIGGMILIDFINMKRREDKEKVRERLMIALQDDRTYTRVLGFTELGILEMTRKR 371 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +++ V + Sbjct: 372 KKHSLRDVLLEECAPCKATGYVISNETIAYELERELITYGNIED-EAVLIGASKKVQKHF 430 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGH 579 E + I + + I + + +V Sbjct: 431 SQ------KELQKNIPFEIYFKDD---IIEKYAIIRFGSKKEIVERKK 469 Score = 86.2 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV + ++ EL ++ +++I G+IY+ ++ R + AAFV+ G Sbjct: 9 KTLYINYT-GSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIG 67 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L F ++ Y Sbjct: 68 LEKHAYLSFDDVPSSY 83 >gi|46203168|ref|ZP_00208831.1| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum MS-1] Length = 135 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 61/81 (75%), Positives = 72/81 (88%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NKMLIDA+H EETRVV ++ +RVEE DFE+ +++ ++GNIYLAKVTRVEPSLQAAFV+Y Sbjct: 4 NNKMLIDATHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFVEY 63 Query: 62 GGNRHGFLPFLEIHPDYYQIP 82 GGNRHGFL F EIHPDYYQIP Sbjct: 64 GGNRHGFLAFNEIHPDYYQIP 84 >gi|205374316|ref|ZP_03227114.1| ribonuclease G [Bacillus coahuilensis m4-4] Length = 379 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 183/386 (47%), Gaps = 8/386 (2%) Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 ++K+E +KG VT + G + V MPN + +++ + ++PA Sbjct: 1 MMKDETDSKGPKVTGLIEYKGLHMVYMPNGGYVAASKKIT---DEKRQALKEWAKTKLPA 57 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 G G++ RT ++ + LM+ V + +++ AP L+ +E + ++ L+ Sbjct: 58 GDGLLFRTVAGHCDWSTLEEELNQLMQESQLVEKQLVHTSAPALI-KETDAFLNSLSSLF 116 Query: 304 CKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEV 363 K+ + S A V+ + IF ++ + +L + ++ Sbjct: 117 EKEWKAEDTVWVDSEEMLT--VIKQHMSQACSVKLHVSAQNIFNSFNLDHSVGALMKRKL 174 Query: 364 TLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLI 423 L + G+++ + EAL SID+N+G+ST+ ++ T ++TN AA I Q++LR+L+G+I Sbjct: 175 WLENGGFIVFDYGEALTSIDINTGKSTKNQSLQQTVMETNRLAAVLICEQIKLRNLSGMI 234 Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 ++DF++M+ ++ + + + +K+ KKD R V + +L+++R++ S+ ++ TK Sbjct: 235 LIDFVNMKSSRDKQEILELVKKECKKDPVRTVVVGFTELDVLQLTRKKTSISLQDAFTKE 294 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C G G + + ++AL + R + EY Q+ I +HT + V Y + + E Sbjct: 295 CPTCLGYGRVYHEENIALKLERELWEY-EQHDGEKITIHTTNGVHEYFSGKNSSHKERLE 353 Query: 544 ARFGVSINVVIGIELADKLFYIEKGS 569 + + + + I + Sbjct: 354 RVLHKELVFRLVDQ-PIPFYEIVRVD 378 >gi|153953512|ref|YP_001394277.1| Rne [Clostridium kluyveri DSM 555] gi|219854134|ref|YP_002471256.1| hypothetical protein CKR_0791 [Clostridium kluyveri NBRC 12016] gi|146346393|gb|EDK32929.1| Rne [Clostridium kluyveri DSM 555] gi|219567858|dbj|BAH05842.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 478 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 114/420 (27%), Positives = 205/420 (48%), Gaps = 14/420 (3%) Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 + + + +K ++L +IVKE++G KGA + +S+ G+Y VL + G Sbjct: 62 KRNAYMYIDKKFKNINLKKGDMVLGEIVKEDQGKKGAKIVKNISIPGKYCVLNSSY-NGI 120 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 S+KI + K I L +PAG+G+++RT + + + E L +++ V + Sbjct: 121 QFSKKIHSE---SFKKNILESLRLPAGIGLMIRTESENIPLEVVHNEMEKLYKVYSQVIK 177 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 A P L+++ G ++ +R+ D I V+ ++ Y+ +DF+K L + + Sbjct: 178 SAAYLQKPGLLFDNGGILGEVLRNKLIDDDFMIYVNNQEDYKYVEDFLKGLHNARVNLQL 237 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 +F +E ++ +L ++ L GY++IN+TEA+ IDVNSG++ + ++ Sbjct: 238 Y-TGNKNLFSYYELENKILNLRSNKIELKCGGYIVINKTEAMFVIDVNSGKNIKNGTMDK 296 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 T L TNL+AAEEIA Q+ LR+L G+I++DFIDM+ KN R V KLKE L D+ + + Sbjct: 297 TVLITNLQAAEEIAAQIILRNLNGIILIDFIDMDNNKNKRKVMDKLKEGLLMDKNKTVIY 356 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 + L++++R+R+ S+ + + C C G G S + L I + + Sbjct: 357 PFTELNLVQIARKRMGRSINDYIEEDCGCCGGTGKKIKLSYMTLLIKNEILNMCYEKNIE 416 Query: 518 NIIVHTHSDVVLYLLNQKRATIVEY--EAR-----FGVSINVVIGIELADKLFYIEKGSP 570 +I + S Y+ + I + E + +G I+ + L IE Sbjct: 417 DIHIDMDSFYESYIKKGTKDFIKDIGAENKRVYITYGKKISCKVEALLFASD--IEDFKD 474 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ ++ S + R+++ ++ ++E + + +K G IY+ V + P+++ AF+D G Sbjct: 2 KEIFVERST-KVLRIIIRQEKIIKECFMKEQDQKAYPGEIYMGIVKNIVPAIKCAFIDIG 60 Query: 63 GNRHGFLPF 71 R+ ++ Sbjct: 61 CKRNAYMYI 69 >gi|148380941|ref|YP_001255482.1| ribonuclease, Rne/Rng family [Clostridium botulinum A str. ATCC 3502] gi|153932956|ref|YP_001385310.1| ribonuclease [Clostridium botulinum A str. ATCC 19397] gi|153934768|ref|YP_001388718.1| ribonuclease [Clostridium botulinum A str. Hall] gi|168179480|ref|ZP_02614144.1| ribonuclease, Rne/Rng family [Clostridium botulinum NCTC 2916] gi|170754795|ref|YP_001782623.1| ribonuclease [Clostridium botulinum B1 str. Okra] gi|148290425|emb|CAL84552.1| ribonuclease G [Clostridium botulinum A str. ATCC 3502] gi|152929000|gb|ABS34500.1| ribonuclease, Rne/Rng family [Clostridium botulinum A str. ATCC 19397] gi|152930682|gb|ABS36181.1| ribonuclease, Rne/Rng family [Clostridium botulinum A str. Hall] gi|169120007|gb|ACA43843.1| ribonuclease, Rne/Rng family [Clostridium botulinum B1 str. Okra] gi|182669830|gb|EDT81806.1| ribonuclease, Rne/Rng family [Clostridium botulinum NCTC 2916] Length = 479 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 106/451 (23%), Positives = 209/451 (46%), Gaps = 15/451 (3%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + ++ ++ I D+ +V I + +I SA D+ N Sbjct: 7 ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK +LV++VKE+ KG VT +++ GRY+VL Sbjct: 66 ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ + + + + P +G+++RT + + I + L +++ Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + + ++++ G ++ + +RD +IS+I ++ + Y +F+K + Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ E + IE ++ SL +V L GY+II++TEA+ +DVNSG++ + Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + +E T TN+EAA+EI Q+ LR+L G+IV+DFIDM+ + V KLK+ LK+D+ Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + L++++R+R ++ + + C C G G I S + + L I + L Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 +I + + Y+ + I E E Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ E R+V+ +N ++EL E ++K G IY+ V + P++++AFVD G Sbjct: 2 KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60 Query: 63 GNRHGFLPF 71 N++ +L Sbjct: 61 WNKNAYLYL 69 >gi|153940954|ref|YP_001392266.1| ribonuclease [Clostridium botulinum F str. Langeland] gi|152936850|gb|ABS42348.1| ribonuclease, Rne/Rng family [Clostridium botulinum F str. Langeland] gi|295320260|gb|ADG00638.1| ribonuclease, Rne/Rng family [Clostridium botulinum F str. 230613] Length = 479 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 106/451 (23%), Positives = 209/451 (46%), Gaps = 15/451 (3%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + ++ ++ I D+ +V I + +I SA D+ N Sbjct: 7 ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK +LV++VKE+ KG VT +++ GRY+VL Sbjct: 66 ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ + + + + P +G+++RT + + I + L +++ Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINVSIENINNEIRRLYKIY 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + + ++++ G ++ + +RD +IS+I ++ + Y +F+K + Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ E + IE ++ SL +V L GY+II++TEA+ +DVNSG++ + Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + +E T TN+EAA+EI Q+ LR+L G+IV+DFIDM+ + V KLK+ LK+D+ Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + L++++R+R ++ + + C C G G I S + + L I + L Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 +I + + Y+ + I E E Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ E R+V+ +N ++EL E ++K G IY+ V + P++++AFVD G Sbjct: 2 KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60 Query: 63 GNRHGFLPF 71 N++ +L Sbjct: 61 WNKNAYLYL 69 >gi|168181675|ref|ZP_02616339.1| ribonuclease, Rne/Rng family [Clostridium botulinum Bf] gi|237796442|ref|YP_002863994.1| ribonuclease, Rne/Rng family [Clostridium botulinum Ba4 str. 657] gi|182675207|gb|EDT87168.1| ribonuclease, Rne/Rng family [Clostridium botulinum Bf] gi|229263533|gb|ACQ54566.1| ribonuclease, Rne/Rng family [Clostridium botulinum Ba4 str. 657] Length = 479 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 107/451 (23%), Positives = 210/451 (46%), Gaps = 15/451 (3%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + ++ ++ I D+ +V I + +I SA D+ N Sbjct: 7 ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK +LV++VKE+ KG VT +++ GRY+VL Sbjct: 66 ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ + + + + P +G+++RT + + I + L +++ Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + + ++++ G ++ + +RD +IS+I ++ K Y +F+K + Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCRKDYVYVSEFLKEYGENN 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ E + IE ++ SL +V L GY+II++TEA+ +DVNSG++ + Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + +E T TN+EAA+EI Q+ LR+L G+IV+DFIDM+ + V KLK+ LK+D+ Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + + L++++R+R ++ + + C C G G I S + + L I + L Sbjct: 352 KSVVYSFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 +I + + Y+ + I E E Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ E R+V+ +N ++EL E ++K G IY+ V + P++++AFVD G Sbjct: 2 KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60 Query: 63 GNRHGFLPF 71 N++ +L Sbjct: 61 WNKNAYLYL 69 >gi|170759404|ref|YP_001788302.1| ribonuclease [Clostridium botulinum A3 str. Loch Maree] gi|169406393|gb|ACA54804.1| ribonuclease, Rne/Rng family [Clostridium botulinum A3 str. Loch Maree] Length = 479 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 110/451 (24%), Positives = 212/451 (47%), Gaps = 15/451 (3%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + ++ ++ I D+ +V I + +I SA D+ N Sbjct: 7 ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK +LV++VKE+ KG VT +++ GRY+VL Sbjct: 66 ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ + D K EI + P +G+++RT + + +I + L +++ Sbjct: 117 NNEITFSHKI----KDEKIKAEIQNNIVKPKDVGILIRTEAINTSIEDINNEIRRLYKIY 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + + ++++ G ++ + +RD +IS+I ++ + Y +F+K + Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ E + IE ++ SL +V L GY+II++TEA+ +DVNSG++ + Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + +E T TN+EAA+EI Q+ LR+L G+IV+DFIDM+ + V KLK+ LK+D+ Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + L++++R+R ++ + + C C G G I S + + L I + L Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFAYMRLLIRNEIINILN 411 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 +I + + Y+ + I E E Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442 Score = 75.8 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ E R+V+ +N ++EL E ++K G IY+ V + P++++AFVD G Sbjct: 2 KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60 Query: 63 GNRHGFLPF 71 N++ +L Sbjct: 61 WNKNAYLYL 69 >gi|226950414|ref|YP_002805505.1| ribonuclease, Rne/Rng family [Clostridium botulinum A2 str. Kyoto] gi|226842901|gb|ACO85567.1| ribonuclease, Rne/Rng family [Clostridium botulinum A2 str. Kyoto] Length = 479 Score = 179 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 106/451 (23%), Positives = 208/451 (46%), Gaps = 15/451 (3%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + + ++ I D+ +V I + +I SA D+ N Sbjct: 7 ERQRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK +LV++VKE+ KG VT +++ GRY+VL Sbjct: 66 ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ + + + + P +G+++RT + + I + L +++ Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + + ++++ G ++ + +RD +IS+I ++ + Y +F+K + Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ E + IE ++ SL +V L GY+II++TEA+ +DVNSG++ + Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + +E T TN+EAA+EI Q+ LR+L G+IV+DFIDM+ + V KLK+ LK+D+ Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + L++++R+R ++ + + C C G G I S + + L I + L Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 +I + + Y+ + I E E Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442 Score = 73.5 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ E R+V+ N ++EL E ++K G IY+ V + P++++AFVD G Sbjct: 2 KEIFIER-QRENVRIVLRESNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60 Query: 63 GNRHGFLPF 71 N++ +L Sbjct: 61 WNKNAYLYL 69 >gi|228987698|ref|ZP_04147809.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771972|gb|EEM20427.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 457 Score = 179 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 185/368 (50%), Gaps = 11/368 (2%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEGQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I ++IV +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVIVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNEVAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ + + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKIRECLIAAMQHDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + S+ + + C CK GY+ S ++A + R + Y +I +L Sbjct: 360 KKHSLRDVLLEECAPCKATGYVMSYETIAYELERELITYGNIEDEAVLISAPKELQKQFL 419 Query: 532 LNQKRATI 539 + + I Sbjct: 420 KKELQKNI 427 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 37/65 (56%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEENKKIVEFLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSSY 71 >gi|322807313|emb|CBZ04887.1| cytoplasmic axial filament protein CafA and Ribonuclease G [Clostridium botulinum H04402 065] Length = 479 Score = 179 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 106/451 (23%), Positives = 208/451 (46%), Gaps = 15/451 (3%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + + ++ I D+ +V I + +I SA D+ N Sbjct: 7 ERQRENVRIVLRESNHIKELFIEKDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK +LV++VKE+ KG VT +++ GRY+VL Sbjct: 66 ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ + + + + P +G+++RT + + I + L +++ Sbjct: 117 NNEITFSHKIKDEKIRTEIQ----NNIVKPKDVGILIRTEAINTSIENINNEIRRLYKIY 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + + ++++ G ++ + +RD +IS+I ++ + Y +F+K + Sbjct: 173 SSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVSEFLKEYGENN 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ E + IE ++ SL +V L GY+II++TEA+ +DVNSG++ + Sbjct: 233 IKLDIY-EGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVVDVNSGKNVKG 291 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + +E T TN+EAA+EI Q+ LR+L G+IV+DFIDM+ + V KLK+ LK+D+ Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDKLKQGLKRDKN 351 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + L++++R+R ++ + + C C G G I S + + L I + L Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLLIRNEIINILN 411 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 +I + + Y+ + I E E Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEIE 442 Score = 73.9 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ E R+V+ N ++EL E ++K G IY+ V + P++++AFVD G Sbjct: 2 KEIFIER-QRENVRIVLRESNHIKELFIEKDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60 Query: 63 GNRHGFLPF 71 N++ +L Sbjct: 61 WNKNAYLYL 69 >gi|222099826|ref|YP_002534394.1| Ribonuclease, Rne/Rng family [Thermotoga neapolitana DSM 4359] gi|221572216|gb|ACM23028.1| Ribonuclease, Rne/Rng family [Thermotoga neapolitana DSM 4359] Length = 417 Score = 179 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 116/377 (30%), Positives = 188/377 (49%), Gaps = 12/377 (3%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +LVQ+ K+ G KG VT + +A R+ V+ K +SRKI N ++R+ L+ + Sbjct: 32 EGAKVLVQVKKDASGKKGPQVTAQIGIADRFVVVF-PFKKVVGVSRKIENRLERRRLRSL 90 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A L G+GVI+RTA + EI ++F+ M W+ V + S P L+YEE + I Sbjct: 91 AIDLRKRYGIGVIIRTAAEGVEEEEIVKNFQEAMNKWNEVLQKFRRSRKPKLLYEE-DPI 149 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 ++ +++ I +I + + ++ + + + +F + I +L Sbjct: 150 EQIVKEKVNSKIDRLIYNE----KSILSTLEKYVQTLPKRPELVYTEGDLFEKYFIYDRL 205 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 L V L S G ++I++TEAL IDVNS T E+ AL+TNLEA EEI RQL Sbjct: 206 KQLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELALKTNLEAIEEIIRQLI 265 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR++ G++VVDFI + KN + ++ KE KKD +++V +N GLLEM+R+R Sbjct: 266 LRNIGGIVVVDFIKQRDPKNYEKILERFKELAKKDGTKIEVFGFTNLGLLEMTRKRTTRP 325 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 + C C G G + SQ + + R E+ + + H ++ Y K Sbjct: 326 LDAFLFTRCPVCGGTGKVISQKVL---LKRIKEDLKKLREFDEVTLKLHPNMSGYF---K 379 Query: 536 RATIVEYEARFGVSINV 552 + + E F V I++ Sbjct: 380 KEDVKRLEREFKVKISL 396 >gi|11465677|ref|NP_053821.1| ribonuclease E [Porphyra purpurea] gi|1710610|sp|P51211|RNE_PORPU RecName: Full=Ribonuclease E homolog; Short=RNase E gi|1276677|gb|AAC08097.1| RNAse E [Porphyra purpurea] Length = 511 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 103/328 (31%), Positives = 170/328 (51%), Gaps = 5/328 (1%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 KK I ++ RQ +LVQI+KE NKG +T ++L+GRY VLMP S+ ISR Sbjct: 74 KKKYYINNITNILTIRQKILVQIIKEPTLNKGPRLTANITLSGRYIVLMPF-SQAICISR 132 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + +R LK L P MG++ R + + I + L W +++ A+N Sbjct: 133 KIYDEDERHYLKA-LAILIKPPTMGLLFRPSAIGIDEEIILSELTNLKEQWYFIQKSAIN 191 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA---RIVRQ 338 + AP L+Y++ +++K+ IRD Y + I++ G ++ ++ +++ ++ Sbjct: 192 NCAPVLLYKDEDIVKKVIRDFYDNNTKNIVIDSNLGLKQLNYYINTWQCNFSSTIPSLQL 251 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 Y I I + +V L GY+ I EA IDVNSG +T Sbjct: 252 YSSNKCILDTFRINQAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGSFNNSTSARET 311 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 L+TN AA EIA QL++R++AG+I++DFIDME +++ + + + L D A+ Q+ Sbjct: 312 VLKTNCSAATEIAYQLKIRNIAGVIIIDFIDMESQRDQLQLLEHFDKELSLDDAKPQIVQ 371 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTY 486 +S GL+E++R+R S+ E + Y Sbjct: 372 LSELGLVELTRRRKGKSLYELVSNDSNY 399 Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M N ++I H +L ++++L + +IYL V ++ + AAFVD Sbjct: 1 MTNTIVISCLHNI---AAILYCGQIQKLVV--ANAHYQVSDIYLGTVDKIFSGINAAFVD 55 Query: 61 YGGNR-HGFLPFLEIHP---DYY 79 G N GF+ + P YY Sbjct: 56 LGKNEYSGFIHISDTGPLKKKYY 78 >gi|160902895|ref|YP_001568476.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95] gi|160360539|gb|ABX32153.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95] Length = 471 Score = 176 bits (446), Expect = 9e-42, Method: Composition-based stats. Identities = 110/482 (22%), Positives = 218/482 (45%), Gaps = 17/482 (3%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 D + + S + A+ ++ ++ + + + I E S+ + + Sbjct: 2 DEEKTMLVSKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVN 61 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 + K +LVQ+ K+ KG ++ +SL G Sbjct: 62 IGLGKNGFLRYRDVLDDPNQY---------KVGDKILVQVRKDGGTRKGPQLSMQISLPG 112 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 +Y V +PN+++ ISRKI +R L+++A+ + + +I RT + E++ + Sbjct: 113 KYLVYIPNSNESIGISRKILQEKERIRLRQVAKKILID-NESIIFRTNSEGIDEKEVEVE 171 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 + ++++++ + + P ++YEE + ++ +R+ +II + +R+ K Sbjct: 172 LSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFRKLKKS 231 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 +K + + +F I Q++ + ++ L G + +++TEAL +IDV Sbjct: 232 LKGFELKPKVEFVRGD----VFQIHNIYHQMEEIFTKKIELSGGGTITVDRTEALTAIDV 287 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 +S + IE+T+ TN+EAA+EIARQL+LR++ G+IVVDFIDM++ + +++ LK Sbjct: 288 DSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTIINILK 347 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 E KKD+++V + +N GLLE+ R+R + + C C G G I + S V ++ Sbjct: 348 EESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKIIAPSLVHGRLI 407 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI-VEYEARFGVSINVVIGIELADKLF 563 + + + I V + L + E E + V + V L + Sbjct: 408 KELLSSAKEIKKEKIKVIEINA-FHNLSGYLTPALTEELEKQLNVKLEVSFN-WLNPNSY 465 Query: 564 YI 565 I Sbjct: 466 NI 467 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 2 ANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 ML+ + +EE R+ +L ++++ E+ FE + G I+L + PSL+A FV+ Sbjct: 4 EKTMLV-SKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNI 62 Query: 62 GGNRHGFLPFLEIHPDYYQIPFSDR 86 G ++GFL + ++ D Q D+ Sbjct: 63 GLGKNGFLRYRDVLDDPNQYKVGDK 87 >gi|160938949|ref|ZP_02086300.1| hypothetical protein CLOBOL_03843 [Clostridium bolteae ATCC BAA-613] gi|158437912|gb|EDP15672.1| hypothetical protein CLOBOL_03843 [Clostridium bolteae ATCC BAA-613] Length = 385 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 158/328 (48%), Gaps = 1/328 (0%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 P ++ E +K L+VQ+ K+ +K VT LS GRY VL Sbjct: 58 DIGPGCTGYYSLQERWKPERLKTGDELVVQVSKDAVKSKAPVVTERLSFTGRYCVLTVGK 117 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ++ + + + L +G+I+RT + + ++ + LMR W Sbjct: 118 TGIGFSAKIRDASYKARLRELLECDLAGTKDLGIIVRTNAVTVEECAVREELAELMRTWQ 177 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + A V +Y AIRD + + EII + +RE K ++++ A Sbjct: 178 RLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEYHRELKAYLEMCQKEDA 237 Query: 334 RIVRQYEDPHPIF-FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 + YED +E + V L S GY++I TEA+ IDVN+G+ + Sbjct: 238 GRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPTEAMTVIDVNTGKYSGR 297 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 ++DT + N+EAA+EI RQ+RLR+L+G+I+VDFIDME +++ +++ L E + +D Sbjct: 298 KKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDRKALLAHLVEVVSRDPV 357 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLEST 480 + V ++ L+E++R+++R + E Sbjct: 358 KTTVVDMTALNLVELTRKKVRKPLHEQV 385 Score = 71.5 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M L+ ++ V+ D +V +L E + + GNIY+ KV +V ++ AAF+D Sbjct: 1 MDK--LVVTRRGDKVCTAVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFID 58 Query: 61 YG 62 G Sbjct: 59 IG 60 >gi|152976861|ref|YP_001376378.1| ribonuclease [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025613|gb|ABS23383.1| ribonuclease, Rne/Rng family [Bacillus cytotoxicus NVH 391-98] Length = 463 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 108/427 (25%), Positives = 195/427 (45%), Gaps = 21/427 (4%) Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 E + Q +LVQ+VKE KG +T + G+Y V MP Sbjct: 58 NIGLEKHAYLSYDDVPKAYRVHEGQAILVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-Y 116 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + +SRKI + ++ +EV G I R+A T +IK + E+ +L++ Sbjct: 117 DEMRAVSRKIKSQK----KRKDLFAIEVEGLGGYIFRSACEKGTTADIKAEIEHFQQLFE 172 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++ AP LV+ + R ++ + I +++V + RE ++ + Sbjct: 173 ELKRKERCGKAPVLVHRPATFLDRIFQENPTESIEKVVVDSREPVRELENKLGK------ 226 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 V Y + +F GIE +++ Q V L + Y+II Q E + IDVN+G+ T + Sbjct: 227 EKVFFYREKSSMFSHYGIEREIEKALQKIVWLQNGSYLIIEQMETMTVIDVNTGKFTGKQ 286 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 ++DT ++TN A EEIARQLRLRD+ G+I++DFI+M+++++ + +KL +L+ DR Sbjct: 287 DLQDTVVRTNEIAVEEIARQLRLRDIGGMILIDFINMKKEEDQERIREKLIIALQDDRTY 346 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 +V + G+LEM+R+R + S+ + + C C GY S ++A + R + Y Sbjct: 347 TRVLGFTELGILEMTRKRKKQSLRDILLEDCAKCMATGYSISNETIAYELERELLSYSHM 406 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 +++ V L E + I + + + + Q Sbjct: 407 ED-EAVLIAAPKAVQKIFLQ------KELQKNIPFQIYFKEEEM---EKYALIRFGTKQE 456 Query: 574 LVNTGHK 580 +++ + Sbjct: 457 MIDRKNS 463 Score = 81.2 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ + E RV + ++ EL + ++I G IY+ +V R + AAFV+ G Sbjct: 2 KTLYINYT-GSEKRVAIEEKQKIVELSWHRNGDEEIVGYIYVGRVVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEI 74 +H +L + ++ Sbjct: 61 LEKHAYLSYDDV 72 >gi|253581848|ref|ZP_04859072.1| ribonuclease G and E [Fusobacterium varium ATCC 27725] gi|251836197|gb|EES64734.1| ribonuclease G and E [Fusobacterium varium ATCC 27725] Length = 489 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 122/509 (23%), Positives = 227/509 (44%), Gaps = 46/509 (9%) Query: 74 IHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET 133 I+ D +Q R A++++ + + E + +G + ++ A + Sbjct: 6 INIDEFQ----SRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNIGL 61 Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193 E+ + V D++ + + I++++ ++VQI+ E RG KG Sbjct: 62 EKNGFL--------YVNDLREFEEKYLDGILNSSRPIEDILNVGDDVVVQILNEPRGTKG 113 Query: 194 AAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAG 253 A VTT+ ++ G+Y VLMPN + + E P MGVI+RTA Sbjct: 114 ARVTTHFTIPGKYLVLMPNNDHIAISKKIKDEKERER--LESIFKEIKPENMGVIIRTAA 171 Query: 254 ASRT--------------KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 ++ +I++ + + ++Y++ +I + Sbjct: 172 FGKSEFHFEREIEYLVKKWEDIEKKIKG--------------AKIGEVLYKDNGIITTVL 217 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV---RQYEDPHPIFFRSGIEVQLD 356 RD++ DI E+IV E Y E D++ + + IF GI ++D Sbjct: 218 RDIFSNDIDELIVDNEDVYWEVIDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEID 277 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 V L GY++I +TEAL+SIDVN+G++T +E+T + TN+EAA+EI RQLRL Sbjct: 278 KALNEVVWLECGGYLVIQKTEALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRL 337 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 R+ G+I++DFIDM +++ V + L++ L+KDR + + ++ GL+EM+R+R + Sbjct: 338 RNFGGIIIIDFIDMRVEEDKIKVLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPL 397 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 +VC C G G I+S+ ++ +++ ++ I V +++ Sbjct: 398 AYYFQEVCPCCNGTGKIKSKDALIHELMKEIKICSEDKDISTIKVRLSKNLIESFKEIYF 457 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYI 565 I E+ +I + + + I Sbjct: 458 EIIKEFLKMKKKAIELEVDTN-NSCQYEI 485 Score = 94.3 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N+++I+ ++R ++ D +V E+ E E + +I G+IY KV V P +++AFV+ G Sbjct: 2 NQIVINIDE-FQSRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNIG 60 Query: 63 GNRHGFLPFLEI 74 ++GFL ++ Sbjct: 61 LEKNGFLYVNDL 72 >gi|187932568|ref|YP_001884781.1| ribonuclease, Rne/Rng family [Clostridium botulinum B str. Eklund 17B] gi|187720721|gb|ACD21942.1| ribonuclease, Rne/Rng family [Clostridium botulinum B str. Eklund 17B] Length = 482 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 210/470 (44%), Gaps = 21/470 (4%) Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 ND +E + E + + + + I Sbjct: 19 ENDKLVESIVEENKNEPIIGEIYKARVKKILPAINSIFVDLGLNKEGYLYYSEELKNNGI 78 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K + +LV++VKE +KGA +TT +S+ G+Y+VL KG S++I + +K + E Sbjct: 79 KKGEDILVEVVKEPINDKGAKLTTKVSIPGKYAVLNC-YDKGIHFSKRIVDEEKKKEILE 137 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L +G+ +RT + +K + + L + N+ + S VY E Sbjct: 138 NLQELN---DVGITIRTEAINTEVKTLKNEIDRLYNEFLNINKSLKYSTQVKKVYGEDLS 194 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + R +R+ ++ +I V +K + + +DF K ++ Y IF G+E + Sbjct: 195 LFRILRNTIGQNPVKIYVDNKKDFEKIEDFSKD---ENNVVLELYSGLRNIFDFYGLEKE 251 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L L +V LP GY+II++TEA+ IDVNSG++ + + T L+TNLEAA+EI Q+ Sbjct: 252 LLKLRHNKVNLPCGGYIIIDKTEAMYVIDVNSGKNIKGRSFDKTILETNLEAAKEIGNQV 311 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 ++R+L+G+IV+DFIDM +K V K+L+ESL D+ ++ + L+++SR+R Sbjct: 312 KVRNLSGIIVIDFIDMRDKSQKNIVMKELEESLSSDKGNTKIFKFTELDLVQISRRRQGK 371 Query: 475 SVLESTTKVCTYCKGAGYIRS----QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 S+ E + C C G G I Q + ILR E+ + I + Sbjct: 372 SIYEYMEENCMTCNGHGRILKLSYIQDLIKNEILRIKEDNTISSFYIEIDNVYKERIKGD 431 Query: 531 LLN--------QKRATIVEYEARFGVSIN--VVIGIELADKLFYIEKGSP 570 L N K + E G I + ++ + + I + Sbjct: 432 LFNFLKEIDCLDKEIYLNYIENMEGFKIEPLIFQSQKVNLEKYKITQFDT 481 Score = 69.2 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ R+ + ++++ E E + I G IY A+V ++ P++ + FVD G Sbjct: 2 KEIFIERKESL-LRIGIRENDKLVESIVEENKNEPIIGEIYKARVKKILPAINSIFVDLG 60 Query: 63 GNRHGFLPFLE 73 N+ G+L + E Sbjct: 61 LNKEGYLYYSE 71 >gi|187778428|ref|ZP_02994901.1| hypothetical protein CLOSPO_02022 [Clostridium sporogenes ATCC 15579] gi|187772053|gb|EDU35855.1| hypothetical protein CLOSPO_02022 [Clostridium sporogenes ATCC 15579] Length = 479 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 112/451 (24%), Positives = 210/451 (46%), Gaps = 15/451 (3%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + ++ ++ I D+ +V I + +I SA D+ N Sbjct: 7 ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK +LV++VKE+ KG VT +++ GRY+VL Sbjct: 66 ---------YLYLDKKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAITIPGRYTVLQIL 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 ++ + D K +EI + P +G+++RT + + I + L ++ Sbjct: 117 NNEITFSHKI----KDEKIKREIQNNIVKPKEVGILIRTEAINASIENINDEIRRLSDVY 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 ++ E + + L+++ G ++ + +RD +IS+I ++ + Y +F+K + Sbjct: 173 SSLIEKSKYKMNTGLLFQNGGIVGKILRDKLTDNISKIYLNSREDYVYVSEFLKEYGENN 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ E + IE ++ SL +V L GY+II++TEA+ +DVNSG++ + Sbjct: 233 IKLNIY-EGERNLLDYYAIEKEILSLRNKKVYLDCGGYIIIDKTEAMYVVDVNSGKNVKG 291 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + +E T TN+EAA+EI Q+ LR+L G+IV+DFIDM + V KLK+ LK+D+ Sbjct: 292 NSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMNNENLKEKVLDKLKQGLKRDKN 351 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + V + L++++R+R ++ + + C C G G I S S + L I + L Sbjct: 352 KSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFSYMKLLIRNEIINILN 411 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 +I + + Y+ + I E E Sbjct: 412 MREIKDIYIELNKRYKDYIDKNRIQFISEVE 442 Score = 75.8 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ E R+V+ +N ++EL E ++K G IY+ V + P++++AFVD G Sbjct: 2 KEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIG 60 Query: 63 GNRHGFLPF 71 N++ +L Sbjct: 61 WNKNAYLYL 69 >gi|210623761|ref|ZP_03294021.1| hypothetical protein CLOHIR_01972 [Clostridium hiranonis DSM 13275] gi|210153343|gb|EEA84349.1| hypothetical protein CLOHIR_01972 [Clostridium hiranonis DSM 13275] Length = 469 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 190/393 (48%), Gaps = 6/393 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K +LVQ++K+E G KGA ++ +S +GRY V +P+ ++ ++ + + + Sbjct: 79 KTGDDVLVQVIKDEIGTKGAKISQEISFSGRYLVYIPSNTRVTMSNKIVDEKERLRLKR- 137 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 G I+RT + + K D + L L+ NV + P L+Y + Sbjct: 138 -LFYTNCKNETGYIIRTEAQGCSMEDFKNDIKELKSLYANVEKEFKRGKGPKLLYTASDT 196 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + +RD +I II + E Y + ++ +K + Y +++ + +F G+E Q Sbjct: 197 AIKYVRDNISDEIETIITNDENKYNDLREILKEIDRKYLDVLKL-DKNVDVFNVYGVEAQ 255 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L+ +V L S GY+II +TEAL IDVNSG+ T + +TA++ N EAA EI Q+ Sbjct: 256 LNRYLSKKVWLKSGGYLIIEKTEALTVIDVNSGKFTGGAKLANTAMKINEEAAREIVNQI 315 Query: 415 RLRDLAGLIVVDFIDMEE-KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RD+AG+I+VDFID + + + + +KE KKD+ + +V +++ GL+E+SR+R + Sbjct: 316 IVRDIAGIIIVDFIDDQIVSSSKKKLLNIMKEEFKKDKRKNEVKGMTSLGLVEISRRREK 375 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 + + C C S +S+ I + + + + + + ++N Sbjct: 376 EPLEDYFFSDCKRCGSKYGDLSINSILDLIEKKIMNISRNTVYKKVKLVFNPSIKPNIIN 435 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 I + ++ V I + K F +E Sbjct: 436 NYMNIIKKIGLKYRVEIEIA--ESTDVKDFAVE 466 Score = 83.9 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I++ + + +L D ++EE+ ++ +K I NIY V +V P + A FVD G Sbjct: 5 KKIIIESLESSQ-KTAILNDGKLEEIYIDNTIEKSIVSNIYRGVVQKVLPGMNACFVDIG 63 Query: 63 GNRHGFL 69 ++ +L Sbjct: 64 KEKNAYL 70 >gi|260496869|ref|ZP_05815989.1| ribonuclease G [Fusobacterium sp. 3_1_33] gi|260196611|gb|EEW94138.1| ribonuclease G [Fusobacterium sp. 3_1_33] Length = 458 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 123/454 (27%), Positives = 210/454 (46%), Gaps = 16/454 (3%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + E Sbjct: 7 LSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+P SK +ISR Sbjct: 67 LLSFENKKNIPKFNIDDKLIVQTESEPRDEKGAKLTLDYSINGENLVLLP-KSKNISISR 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK I + G+ILRT +++ + ++ L + + + + Sbjct: 126 KIKDIEEINRLKNIFLSI----DNGLILRTNSEGKSEESLLEEYRKLEDINNQLNKDFEK 181 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYE 340 L + N I + L+ I E I+ E + E K F++ + +R+Y Sbjct: 182 INIGLLY--DVNSILKKAATLFDDMIEEFIIDDEHIFEEIKIFLEETGKKDLIKKLRKYF 239 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++ ++ Sbjct: 240 KDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNIGNKTSQELIF 299 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 QTNLEA +EIARQ++LR+LAG+I+VDFIDM++ + + V ++ K+ L +D+A + + Sbjct: 300 QTNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKKVLEEFKKYLSEDKAEINSVEYT 359 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 N GL++ +R+R + + C YC+G GY S+ + L++L + + I+ Sbjct: 360 NLGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKIV 419 Query: 521 VHTHSDVV----LYLLNQKRATIVEYEARFGVSI 550 + D++ Y+ N K I E I Sbjct: 420 IRAKKDIIKELNKYINNNK---IKYIEDNNFYKI 450 Score = 81.2 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 21/176 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++ +L DN+++E+ E ++K+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ L F N + D + + P D + Sbjct: 62 LEKNALLSF---------------------ENKKNIPKFNIDDKLIVQTESEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + + + E S N + ++D++ + I + Sbjct: 101 LTLDYSINGENLVLLPKSKNISISRKIKDIEEINRLKNIFLSIDNGLILRTNSEGK 156 >gi|10880471|gb|AAG24267.1|AF139612_4 CafA [Neisseria gonorrhoeae] Length = 232 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 124/229 (54%) Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 ++ P+F IE ++ Q V L Y+II TEA+ +IDVN+G + Sbjct: 1 ELFKGERPLFETHNIEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFD 60 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 +T L+TNLEA IAR+LRLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + Sbjct: 61 ETILRTNLEACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTL 120 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 ++ GL+E++R+R R ++ + + C C+G G +++ +V I R + +Y A Sbjct: 121 RGFTSLGLVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDA 180 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + + +V+ L+++ ++ G I++ + + + I Sbjct: 181 ESFRILAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDI 229 >gi|218754175|ref|ZP_03532971.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503] gi|289762614|ref|ZP_06521992.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503] gi|289710120|gb|EFD74136.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503] Length = 463 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 154/291 (52%), Gaps = 16/291 (5%) Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV-----YEEGNL 294 VP+ GVI+RTA + +I+ D L W+ + A + YEE ++ Sbjct: 1 MVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDV 60 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI--------F 346 + + IRDL+ +D +IVSG++ + +++ + P + +YE F Sbjct: 61 LVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVF 120 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLE 405 I+ QL +V LPS G ++I++TEA+ IDVN+G+ T +E T + NLE Sbjct: 121 TVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLE 180 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AAEEI RQLRLRD+ G++V+DFIDM + N V ++L ESL +DR R QV +++ GL+ Sbjct: 181 AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLV 240 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS--VALSILRSVEEYLLQY 514 +++R+R+ + ++E+ + C C G G + A + R E + Sbjct: 241 QLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRG 291 >gi|239623843|ref|ZP_04666874.1| ribonuclease G [Clostridiales bacterium 1_7_47_FAA] gi|239521874|gb|EEQ61740.1| ribonuclease G [Clostridiales bacterium 1_7_47FAA] Length = 393 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 4/309 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++VQ+ ++ K +T L+ GRY VL + G S KI + + ++ Sbjct: 86 KAGDEIVVQVSRDAVKTKAPVLTGKLAFTGRYCVLTAGKT-GVGFSNKIGDNKYKARVRS 144 Query: 235 IARGLEVPAG--MGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + G G+I+RT GA T + +++ L ++ + + A +Y Sbjct: 145 MLNEALAEDGDRFGIIVRTNGAGATDEVLLQEYRQLKDMYLKLSKEASCRTCYSCIYRAL 204 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF-FRSGI 351 AIRD Y + I+ Y E KD+++ A + YED + Sbjct: 205 PGYIAAIRDSYSGTLDGIVTDIPAYYEELKDYLEKYQAEDADKLTLYEDKLLPLSKLYSL 264 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 + L+ V L S GY++I TEA+V IDVN+G+ + + ++DT + N+EAA+EI Sbjct: 265 DSALEHALNKHVWLKSGGYLVIEPTEAMVVIDVNTGKYSGKKKMQDTICRINMEAADEIG 324 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLR+L+G+I++DFIDME +++ + + L + + KD + V ++ L+E++R++ Sbjct: 325 RQLRLRNLSGIILIDFIDMEREEDREMLMRHLGDVVSKDPVKTTVVDMTRLNLVEVTRKK 384 Query: 472 IRSSVLEST 480 +R + E Sbjct: 385 VRKPLYEQI 393 >gi|15606495|ref|NP_213875.1| cytoplasmic axial filament protein [Aquifex aeolicus VF5] gi|2983706|gb|AAC07269.1| cytoplasmic axial filament protein [Aquifex aeolicus VF5] Length = 458 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 103/374 (27%), Positives = 188/374 (50%), Gaps = 15/374 (4%) Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 ++ + ++ ++VQ+ ++ER KGA VT +S+ G+Y V P T K S+K+ Sbjct: 71 QEKKNCKNLRIGDSVIVQLKRKERDLKGAKVTCKVSIPGKYIVYFPETKK-LNFSKKLKG 129 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 ++LK+I + GVI+R + S TK +I ++ + L W++++E A Sbjct: 130 FAFTEDLKKILKEELNDRE-GVIIRASAISATKEQILKELQELRNKWESLKEKAKKVNKG 188 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 L + IK + I + ++ S +R + Sbjct: 189 ILEEGQPQFIKTIL-----DYWGFIKNIYVDNGDVWGEIVEFFGDSIKHKLRYVNTIDTL 243 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 + +D L V L + G+++I QTEAL SIDVNSG T +E+TA NLE Sbjct: 244 PGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSIDVNSGE-TCGKSLEETAYNVNLE 302 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 A +E+A+Q++ R+L+G+I+VD IDM+++K S+ ++K+ + + R+++ I+ GLL Sbjct: 303 ALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSEVKKIFEGEGLRIKIYGITKLGLL 362 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 EM+++ S+ E + C +C+G G+++S+ IL ++E+ L + I++ H Sbjct: 363 EMTKKWESESIYEVIGETCPHCQGKGFVKSKEF----ILHTLEKALEKTRGKKIVLKVHP 418 Query: 526 DVV---LYLLNQKR 536 V +N+K Sbjct: 419 SVAKTVEEFINEKN 432 >gi|78044652|ref|YP_359227.1| ribonuclease [Carboxydothermus hydrogenoformans Z-2901] gi|77996767|gb|ABB15666.1| ribonuclease, Rne/Rng family [Carboxydothermus hydrogenoformans Z-2901] Length = 392 Score = 174 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 165/321 (51%), Gaps = 10/321 (3%) Query: 173 VIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL 232 +K ++LV++VK KGA ++T +SL GR V P + + + + Sbjct: 74 NVKPGDVVLVRVVKNPTAQKGAKLSTVISLPGRNLVYFPQKEMKGISRKLTEDKREYYHR 133 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 G ++ AG ++ ++ + L W + E + + AP L+Y+E Sbjct: 134 ---VLENLNLPGGFIVRTLAGEE---EDLLQEAKRLYEEWQGILERSKTAQAPALLYKED 187 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 +L +R+L KD + + V + + F + I + + + + Sbjct: 188 DLFTWCLRELLDKDFTALYVDDFELLEIGQKFRERFRVLLPPIYKSFN----VMEEFNLI 243 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 ++ L + V L + G ++I +TEAL +IDVNSG+ T + +++TA + NLEAA EIA+ Sbjct: 244 RTMEKLTRERVWLKNGGILVIEKTEALTAIDVNSGKFTGKKDLKETAFKINLEAAREIAK 303 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 Q+RLR++ G+IVVDFI + E++ + + ++E +D+A+V++ + GL+E++RQ+I Sbjct: 304 QIRLRNIGGIIVVDFISLLEEERWEEILRVMEEEFLRDKAKVKITGKTPSGLVEIARQKI 363 Query: 473 RSSVLESTTKVCTYCKGAGYI 493 S+ E T C+ C+G G I Sbjct: 364 GLSIGELFTHECSVCQGTGRI 384 Score = 74.2 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++ E V+ D L + ++ +IYL KV +V P LQAAFV+ Sbjct: 1 MTKTLVFHR-QPEYDLAAVMVDGSPFSLFAKRRDEQTQINDIYLGKVEKVVPGLQAAFVN 59 Query: 61 YGGNRHGFLPFLEI 74 G ++G+LP EI Sbjct: 60 LGLAKNGYLPLDEI 73 >gi|297583759|ref|YP_003699539.1| ribonuclease, Rne/Rng family [Bacillus selenitireducens MLS10] gi|297142216|gb|ADH98973.1| ribonuclease, Rne/Rng family [Bacillus selenitireducens MLS10] Length = 495 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 104/422 (24%), Positives = 193/422 (45%), Gaps = 9/422 (2%) Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 T+ + A + + + E I + LL+++++ K Sbjct: 47 TDIHDGMDAAFIDIGSDKRGFLHKSELNRPDKGEDVPISRQVTKGAYLLLEVLRPGTDTK 106 Query: 193 GAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTA 252 G +T +S +G+Y+V MP S+ +S+K+++ R++ + + + G+I+RT Sbjct: 107 GPKLTEKISFSGKYAVYMPF-SRYVAVSKKMSSESVRESWRAFGKE-RLQEDEGLIIRTN 164 Query: 253 GASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN--LIKRAIRDLYCKDISEI 310 I R+ + L D V+ L+ L R RD + +E+ Sbjct: 165 AEEEDPEVIDREIDLLRAKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEV 224 Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 I G + Y E +++ + + E + + V LP+ G Sbjct: 225 ICDGRQLYEELVREREVMPLGASVSYTRENVAR----LYEFERMMMQTVRPYVWLPNGGS 280 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 ++I +TEA+ IDVNSGR T + + TA QTNL+AA+ IAR+LRLR+++G+I++DFIDM Sbjct: 281 LLIEETEAMTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDM 340 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 + + + V K L++ K+DR RV V ++ GL+EM+R++ R + E + C C G Sbjct: 341 DTDDDRKDVLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGT 400 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 G + + + + + +Q ++ + + + L + + +AR GV + Sbjct: 401 GRVDTANEQLYRVS-EALQEAVQGKTESLWLDLNVRLYEALTSNQEDWASAIKARIGVRV 459 Query: 551 NV 552 V Sbjct: 460 YV 461 Score = 58.1 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 13 EETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72 E R V+ D RV E + G I ++T + + AAF+D G ++ GFL Sbjct: 12 TEARGAVIEDGRVTEWLMSPGPTRLETGMIITGQITDIHDGMDAAFIDIGSDKRGFLHKS 71 Query: 73 EIH-PD 77 E++ PD Sbjct: 72 ELNRPD 77 >gi|188589242|ref|YP_001919959.1| ribonuclease, Rne/Rng family [Clostridium botulinum E3 str. Alaska E43] gi|251777617|ref|ZP_04820537.1| ribonuclease, Rne/Rng family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499523|gb|ACD52659.1| ribonuclease, Rne/Rng family [Clostridium botulinum E3 str. Alaska E43] gi|243081932|gb|EES47822.1| ribonuclease, Rne/Rng family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 482 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 120/492 (24%), Positives = 217/492 (44%), Gaps = 31/492 (6%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + ++ + + + + + I + +I S D+ N E Sbjct: 7 ERKESLLRIGIRENEKLVESIVEENKNEPIIGEIYKGRVKKILPAINSIFVDLGLNKEG- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + IK + +LV++VKE +KGA +TT +S+ G+Y+VL Sbjct: 66 ---------YLYYSEELKSNGIKKGEDILVEVVKEPINDKGAKLTTKVSIPGKYAVLNC- 115 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 KG S++I + +K + E + L +G+ +RT + +K + + + + Sbjct: 116 YDKGINFSKRIVDEEKKKEISENLQELN---DVGITIRTEAINTEIKTLKSEIDRMYNEF 172 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 N+ + S VY E + R +R+ ++ +I V ++ + + KDF K Sbjct: 173 LNINKSLKYSTEVKKVYGEDLSLFRILRNTIGQNSVKIYVDNKEDFEKIKDFSKD---EN 229 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ Y IF G+E +L L +V LP GY++I++TEA+ IDVNSG++ + Sbjct: 230 NVVLELYSGVRNIFDFYGLEKELLKLRHNKVNLPCGGYIVIDKTEAMYVIDVNSGKNIKG 289 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + T L+TNLEAA+EI Q+++R+L+G+IV+DFIDM +K V + L+ES D+ Sbjct: 290 RSFDKTILETNLEAAKEIGNQVKVRNLSGIIVIDFIDMRDKSQKNIVMRALEESFSSDKG 349 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS----VALSILRSVE 508 ++ + L+++SR+R S+ E + C C G G I S + ILR E Sbjct: 350 NTKIFRFTELDLVQISRRRQGKSIYEYMEEECMTCNGHGRILKLSYIQGLIKNEILRIKE 409 Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLN--------QKRATIVEYEARFGVSIN--VVIGIEL 558 + + I + L N K + E G I + ++ Sbjct: 410 DNTISSFYIEIDNVYKERIKGDLFNFLKEIDCLDKEIYLNYIENMEGFKIEPLIFQSQKV 469 Query: 559 ADKLFYIEKGSP 570 + + I + Sbjct: 470 NLEKYKITQFDT 481 Score = 69.6 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ R+ + + ++ E E + I G IY +V ++ P++ + FVD G Sbjct: 2 KEIFIERKESL-LRIGIRENEKLVESIVEENKNEPIIGEIYKGRVKKILPAINSIFVDLG 60 Query: 63 GNRHGFLPFLE 73 N+ G+L + E Sbjct: 61 LNKEGYLYYSE 71 >gi|19703499|ref|NP_603061.1| ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713587|gb|AAL94360.1| Ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 458 Score = 172 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 117/450 (26%), Positives = 204/450 (45%), Gaps = 8/450 (1%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + E Sbjct: 7 LSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNGELIFVDIGSEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+P SK +IS+ Sbjct: 67 LLSFENKKNIPKFNIDDKLIVQTETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISK 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK + + G+ILRT +T+ + +++ ++ +N Sbjct: 126 KIKDVEEVNRLK----NIFLGIDNGLILRTNSEGKTEESLLEEYKK-LKNIENRINRDFE 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + L+Y+ +++K+A II + + +R+Y Sbjct: 181 KINIGLLYDVNSILKKAESLFDDTIEEFIIDDKNIFEEIKVLLEETGKKDLIKKLRKYFK 240 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++T ++ Q Sbjct: 241 GEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEA +EIARQ++LR+LAG+I++DFIDM++ + + V ++ K+ L KDR + +N Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIIDFIDMKKISDRKRVLEEFKKYLNKDRIEINSLEYTN 360 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++ +R+R + + C YC+G GY S+ + L++L + + I++ Sbjct: 361 LGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNAQIKSQDIKKIVI 420 Query: 522 HTHSDVVLYLLNQ-KRATIVEYEARFGVSI 550 T D++ L I E I Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIEDNNFYKI 450 Score = 80.4 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 21/176 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++ +L DN+++E+ E ++K+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNGELIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ L F N + D + T P D + Sbjct: 62 SEKNALLSF---------------------ENKKNIPKFNIDDKLIVQTETEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + + + E S N + ++DV+ + I + Sbjct: 101 LTLDYSINGENLVLLPKSKNLSISKKIKDVEEVNRLKNIFLGIDNGLILRTNSEGK 156 >gi|225418730|ref|ZP_03761919.1| hypothetical protein CLOSTASPAR_05954 [Clostridium asparagiforme DSM 15981] gi|225041738|gb|EEG51984.1| hypothetical protein CLOSTASPAR_05954 [Clostridium asparagiforme DSM 15981] Length = 400 Score = 172 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 145/308 (47%), Gaps = 3/308 (0%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR--KITNPVDRKNLK 233 L++Q+ K+ K VT LS AGRY VL SR + + + Sbjct: 87 PGDELIIQVEKDAVKTKAPVVTCRLSFAGRYCVLTAGKPGVNFSSRLTDQSFKRRVRPVL 146 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 E A G+I+RT + ++ + L +++V+ + V +Y Sbjct: 147 EEAVRARGHEACGLIVRTNAGEAGEEQLLAELAVLFDQYESVQNQGNHRVCYSCLYRSLP 206 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHPIFFRSGIE 352 ++RD + ++ Y E K ++ ++ + + ++ Sbjct: 207 GYMASVRDSLGGSLEAVLTDQADVYEELKHYLALNQQKDLEKLSFYDDPLLSLGALYSLD 266 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 ++ V L S GY++I TEA+V IDVN+G+ + + +++T L+ NLEAA EIA Sbjct: 267 KVMEEALGKRVWLKSGGYLVIEPTEAMVVIDVNTGKYSGKKTLQETILKINLEAAVEIAH 326 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 Q+RLR+L+G+I+VDFIDME +N + K L E++ D + V ++ L+EM+R+++ Sbjct: 327 QIRLRNLSGIILVDFIDMEPGENREILLKALSEAVSADPVKTAVVDMTKLNLVEMTRKKV 386 Query: 473 RSSVLEST 480 R + E Sbjct: 387 RRPLHEQV 394 Score = 63.5 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 28/54 (51%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPF 71 V + L E E + NIY+ KV +V ++ AAFV+ GG R G+LP Sbjct: 16 AVFSGRKPLALTLEPEQGGSLLNNIYIGKVQKVVKNISAAFVEIGGGRVGYLPL 69 >gi|262068134|ref|ZP_06027746.1| ribonuclease G [Fusobacterium periodonticum ATCC 33693] gi|291378222|gb|EFE85740.1| ribonuclease G [Fusobacterium periodonticum ATCC 33693] Length = 458 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 119/444 (26%), Positives = 207/444 (46%), Gaps = 11/444 (2%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ + + + D+ LEE+ +E D+++ E + E Sbjct: 7 LSKNTYETKLALLEDNKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQI E R KGA +T S+ G VL+P SK +IS+ Sbjct: 67 FLSFENKKNIPKFNISDSLIVQIETEARDEKGARLTLDYSINGENLVLLP-KSKNLSISK 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI N + LK + + G+ILRT +T+ + +++ ++ +N Sbjct: 126 KIKNIEEVNRLK----NIFLNIDNGLILRTNSEGKTEESLLEEYK-ALKNIENKVNKEFE 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + L+Y+ +++KRA+ L II ++ + +R+Y Sbjct: 181 KINIGLLYDVNSILKRAVTLLDDSIEEFIIDDKTIFEEIKVLLEEVGKKDLIKKLRKYFK 240 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++T ++ Q Sbjct: 241 DEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEA +EIARQ++LR+LAG+I+VDFIDM++ + + + ++ K L +DR + +N Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKISDRKKLLEEFKRYLSEDRIEISSLEYTN 360 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++ +R+R + + C YC+G GY S+ + L++L + + I+V Sbjct: 361 LGLIQFTRKRQGKELALYYREKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKILV 420 Query: 522 HTHSDVV----LYLLNQKRATIVE 541 T D++ Y+ N K I + Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIED 444 Score = 81.6 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 22/178 (12%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ LI + + ET++ +L DN++EE+ E E +K+I GNIY K+ + + FVD Sbjct: 1 MSK-CLILSKNTYETKLALLEDNKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVD 59 Query: 61 YGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 G ++ FL F N ++D + T D Sbjct: 60 IGLEKNAFLSF---------------------ENKKNIPKFNISDSLIVQIETEARDEKG 98 Query: 121 EEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + + + E S N + +++++ + I + Sbjct: 99 ARLTLDYSINGENLVLLPKSKNLSISKKIKNIEEVNRLKNIFLNIDNGLILRTNSEGK 156 >gi|300853923|ref|YP_003778907.1| putative ribonuclease E [Clostridium ljungdahlii DSM 13528] gi|300434038|gb|ADK13805.1| predicted ribonuclease E [Clostridium ljungdahlii DSM 13528] Length = 479 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 114/473 (24%), Positives = 211/473 (44%), Gaps = 9/473 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGS 156 + + + ND E + E I N V + + Sbjct: 2 EEIFVERSAEGFLRIAIKENDILKECHIQEERGNAYPGEVYIGVVKNVVPAIKCAFIDIN 61 Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + +K + +LVQ+ KE+ G KGA V +SL G+Y VL N SKG Sbjct: 62 CRRNAYMYMDSKFRNLNLKKGEKILVQVTKEDYGRKGAKVIKIISLPGKYCVLS-NFSKG 120 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR 276 S+KI + K I +++P+G+GV++RT + I ++ L +++ ++ Sbjct: 121 MRFSQKIQDE---SFKKLILEKIKIPSGIGVMIRTDAQNVPAEFINKEIHKLNDIYNKIK 177 Query: 277 ELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV 336 A ++ P L+++ G + +RD +I V+ + Y+ +DF+K + + + Sbjct: 178 NKAQYALKPELMFDSGGALGEVLRDRLWDSNLKIYVNNDVDYKYIEDFLK-GVCNVNVHL 236 Query: 337 RQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIE 396 Y + +E Q+ +L + L GY++IN+TEA+ IDVNSG++ R + ++ Sbjct: 237 ELYTGEKTLLSHYNMENQILNLRNNRIELNCGGYIVINKTEAMFVIDVNSGKNIRNNKMD 296 Query: 397 DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQV 456 T TNL+AAEEIARQ+ L++L+G+I++DFIDME++ + + V KLK +++V + Sbjct: 297 KTVFITNLQAAEEIARQIVLKNLSGIILIDFIDMEDEADKKKVMDKLKAGFLNSKSKVVI 356 Query: 457 GAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA 516 + L++++R+R + + + C YC G G S + + I + Sbjct: 357 YPFTELNLVQIARKRQGKPIYDYIEEDCRYCDGTGKKIKLSYMMVLIRNEISNISCDRDV 416 Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + + N I I + +++ + IE Sbjct: 417 KDFHIQIDVSYEKDVKNNMDRFIKGI-GAGDKRIYITYEKKVS---YKIEPLE 465 Score = 52.7 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++ ++ S R+ + ++ ++E + E G +Y+ V V P+++ AF+D Sbjct: 1 ME-EIFVERSAEGFLRIAIKENDILKECHIQEERGNAYPGEVYIGVVKNVVPAIKCAFID 59 Query: 61 YGGNRHGFLP 70 R+ ++ Sbjct: 60 INCRRNAYMY 69 >gi|237741209|ref|ZP_04571690.1| ribonuclease G [Fusobacterium sp. 4_1_13] gi|229430741|gb|EEO40953.1| ribonuclease G [Fusobacterium sp. 4_1_13] Length = 458 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 116/450 (25%), Positives = 203/450 (45%), Gaps = 8/450 (1%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + E Sbjct: 7 LSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+P SK +IS+ Sbjct: 67 FLSFENKKDISKYNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISK 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK + + G+ILRT +++ + ++ + DN Sbjct: 126 KIKDIEEVNRLK----NIFLSTDNGLILRTNSEGKSEENLLEEYR-RLENIDNQINKDFE 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + L+Y+ +++K+ + II ++ + +R+Y Sbjct: 181 KINVGLLYDVNSILKKVVALFDDSTEKFIIDDEHIFKEIKYLLEEIGKKDLIKKLRKYFK 240 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++T ++ Q Sbjct: 241 DEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQEIIFQ 300 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEA +EIARQ++LR+LAG+I++DFIDM++ N + + +K K+ L KD+ + +N Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKKRILEKFKKYLSKDKVEINSVEYTN 360 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++ +R+R + + C YC+G GY S+ + L++L + + I++ Sbjct: 361 LGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKDRIILNLLEDLNNQIKSQDIKKIVI 420 Query: 522 HTHSDVVLYLLNQ-KRATIVEYEARFGVSI 550 T D++ L I E I Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIEDNNFYKI 450 Score = 87.7 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 4/174 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++ +L DN+++E+ E +KK+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVT---HGDVTIPNDHS 119 ++ FL F E D + D+ + E+ + D + V +P + Sbjct: 62 LEKNAFLSF-ENKKDISKYNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLLPKSKN 120 Query: 120 LEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173 L I + + ++I + ++ + + +G S E++ ++++R I Sbjct: 121 LSISKKIKDIEEVNRLKNIFLSTDNGLILRTNSEGKSEENLLEEYRRLENIDNQ 174 >gi|296328079|ref|ZP_06870613.1| ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154855|gb|EFG95638.1| ribonuclease G [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 458 Score = 170 bits (430), Expect = 7e-40, Method: Composition-based stats. Identities = 115/450 (25%), Positives = 205/450 (45%), Gaps = 8/450 (1%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + + Sbjct: 7 LSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNSEIIFVDIGLDKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+P SK +IS+ Sbjct: 67 LLSFENKKNIPKFNIDDKLIVQTETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISK 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK + + G+IL+T +++ + +++ ++ +N Sbjct: 126 KIKDIEEVNRLK----NIFLGIDNGLILKTNSEGKSEESLLEEYKK-LKNIENRINRDFE 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + L+Y+ +++K+A L II + + +R+Y Sbjct: 181 KINIGLLYDVNSILKKAESLLDDTIEEFIIDDKNIFEEIKVLLEETGKKDLIKKLRKYFK 240 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++T ++ Q Sbjct: 241 GEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEA +EIARQ++LR+LAG+I++DFIDM++ + + V ++ K+ L KDR + +N Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIIDFIDMKKISDRKRVLEEFKKYLNKDRIEINSLEYTN 360 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++ +R+R + + C YC+G GY S+ + L++L + + I++ Sbjct: 361 LGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNAQIKSQDIKKIVI 420 Query: 522 HTHSDVVLYLLNQ-KRATIVEYEARFGVSI 550 T D++ L I E I Sbjct: 421 RTKKDIIKELNKYIDNNKIEYIEDNNFYKI 450 Score = 80.4 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 21/176 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++ +L DN+++E+ E ++K+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLALLEDNKLDEIYIERNNQKEITGNIYKGKVVDILNNSEIIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 +++ L F N + D + T P D + Sbjct: 62 LDKNALLSF---------------------ENKKNIPKFNIDDKLIVQTETEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + + + E S N + ++D++ + I + + Sbjct: 101 LTLDYSINGENLVLLPKSKNLSISKKIKDIEEVNRLKNIFLGIDNGLILKTNSEGK 156 >gi|289811332|ref|ZP_06541961.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 235 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 122/234 (52%) Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 E L +R +RD + I V Y +F +P + Y PIF Sbjct: 2 ELALAQRVLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYD 61 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 +E ++ + +V L S GY+II+QTEA+ ++D+N+G ++DT TN+EA + I Sbjct: 62 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAI 121 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQLRLR+L G+I++DFIDM + + R V L+++L KDR + + S GL+EM+R+ Sbjct: 122 ARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRK 181 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 R R SV C C G G +++ +V I+R + Y + +V+ Sbjct: 182 RTRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYAS 235 >gi|153810887|ref|ZP_01963555.1| hypothetical protein RUMOBE_01271 [Ruminococcus obeum ATCC 29174] gi|149833283|gb|EDM88365.1| hypothetical protein RUMOBE_01271 [Ruminococcus obeum ATCC 29174] Length = 396 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 96/310 (30%), Positives = 159/310 (51%), Gaps = 1/310 (0%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 + ++ LLVQI +E K A+T L+ +G+Y VL K ++ N Sbjct: 81 QPLRPGDQLLVQINREAMKGKLPALTANLNFSGKYLVLTTGNRKIGFSNKLSKEESSLLN 140 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 G+I RT A +K E + E L + ++ V N L+YE Sbjct: 141 KWLEEERSLPEREYGIIARTNAAEASKEEFFHELEMLKKQYEKVAVHGRNRTCYSLLYEA 200 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSG 350 A+RD+Y +D+ EI+ + + + ++ P I++ Y+D + Sbjct: 201 EPFYLAAVRDVYTRDLDEIVTDIPEIHEKIFAYLSEFQPDKLEILKLYQDKLLPLYKLYS 260 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 +E +D + ++ L S G+++I QTEA VSIDVNSG+ T + E+T + NLEAA EI Sbjct: 261 LEGAIDEVCHEKIWLKSGGFLVIQQTEAFVSIDVNSGKYTGKKKAEETYRKINLEAAAEI 320 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQ+RLR+L+G+I+VDFI+ME + + L++ L+KD + + I+ +LEM+RQ Sbjct: 321 ARQIRLRNLSGIILVDFINMENPDHQDELFHVLQKYLRKDPVKCKAIDITPLHILEMTRQ 380 Query: 471 RIRSSVLEST 480 ++R ++E Sbjct: 381 KVRRPLIEDL 390 Score = 58.4 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML++ T +++D +V EL E KK NIY+ +V + ++QAAFV + Sbjct: 1 MLLNEVPC--TVCAIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDS 58 Query: 65 RHGFLPFL 72 +G+LP Sbjct: 59 VNGYLPLN 66 >gi|51209866|ref|YP_063530.1| ribonuclease E [Gracilaria tenuistipitata var. liui] gi|50657620|gb|AAT79605.1| ribonuclease E [Gracilaria tenuistipitata var. liui] Length = 497 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 92/320 (28%), Positives = 163/320 (50%), Gaps = 5/320 (1%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I++V+ QI+LVQ+ KE KG +T + L G+Y VLMP S + + Sbjct: 82 IEKVLSINQIILVQVTKEPTIYKGPRLTANIHLHGKYLVLMPFCSTICISHKIYDHNERT 141 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 L P MG++++++ + I +D + L + W + + + +P L+Y Sbjct: 142 --YLYSLGVLLKPGKMGLLIKSSAQGVKEKIILKDLDDLKKQWGFIEKAIIEYSSPLLLY 199 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP---SYARIVRQYEDPHPIF 346 ++ +LIKR IRD Y +++II+ ++G + ++ I++ Y I Sbjct: 200 KDEDLIKRIIRDFYEDSVTKIIIDSKEGLNQLNYYLYKWNCISNRIKTILQLYNHQKCIL 259 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 I+ +++ + +V LP G++II EAL IDVNSG + ++ L+TN A Sbjct: 260 DEFYIKHAINNALKPKVKLPYGGHIIIESNEALTVIDVNSGSFNKSGNSKEAILKTNFYA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A EIA QL++R++ G+I++DFIDM + + + + + LK D A+ Q+ +S GL+E Sbjct: 320 AIEIAHQLKIRNINGVIIIDFIDMSSQGDQLQLLEHFSKLLKLDSAKPQIVQLSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVCTY 486 ++R+R S+ E Sbjct: 380 LTRRRRGQSLQELFIHENNC 399 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 24 RVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG-GNRHGFLPFLEI 74 +++E+ + + +IY+ V ++ S+ AAF+ + GF+ +I Sbjct: 21 KIQEII--TINNPYQVNDIYIGTVEKIFTSINAAFIKLNKSGKSGFIHINDI 70 >gi|256027060|ref|ZP_05440894.1| ribonuclease G [Fusobacterium sp. D11] gi|289765044|ref|ZP_06524422.1| ribonuclease G [Fusobacterium sp. D11] gi|289716599|gb|EFD80611.1| ribonuclease G [Fusobacterium sp. D11] Length = 458 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 124/454 (27%), Positives = 211/454 (46%), Gaps = 16/454 (3%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + E Sbjct: 7 LSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+P SK +ISR Sbjct: 67 LLSFENKKNIPKFNIDDKLIVQTESEPRDEKGAKLTLDYSINGENLVLLP-KSKNISISR 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK I + G+ILRT +++ + ++ L + + + + N Sbjct: 126 KIKDIEEINRLKNIFLSI----DNGLILRTNSEEKSEESLLEEYRKLEDIDNQINKDFEN 181 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYE 340 L + N I + L+ I E I+ E + E K F++ + +R+Y Sbjct: 182 INIGLLY--DVNSILKKAVTLFDDMIEEFIIDDEHIFEEIKIFLEETGKKDLIKKLRKYF 239 Query: 341 DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++ ++ Sbjct: 240 KDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNIGNKTSQELIF 299 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 QTNLEA +EIARQ++LR+LAG+I+VDFIDM++ + + V ++ K+ L +D+A + + Sbjct: 300 QTNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRVLEEFKKYLSEDKAEINSVEYT 359 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 N GL++ +R+R + + C YC+G GY S+ + L++L + + I+ Sbjct: 360 NLGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKIV 419 Query: 521 VHTHSDVV----LYLLNQKRATIVEYEARFGVSI 550 + D++ Y+ N K I E I Sbjct: 420 IRAKKDIIKELNKYINNNK---IEYIEDNNFYKI 450 Score = 79.6 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 21/168 (12%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++ +L DN+++E+ E ++K+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ L F N + D + + P D + Sbjct: 62 LEKNALLSF---------------------ENKKNIPKFNIDDKLIVQTESEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 + + + E S N + ++D++ + I Sbjct: 101 LTLDYSINGENLVLLPKSKNISISRKIKDIEEINRLKNIFLSIDNGLI 148 >gi|302875581|ref|YP_003844214.1| ribonuclease, Rne/Rng family [Clostridium cellulovorans 743B] gi|307690110|ref|ZP_07632556.1| ribonuclease [Clostridium cellulovorans 743B] gi|302578438|gb|ADL52450.1| ribonuclease, Rne/Rng family [Clostridium cellulovorans 743B] Length = 475 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 116/413 (28%), Positives = 195/413 (47%), Gaps = 20/413 (4%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 +K LV++++E K A VT+ +++ G Y V+ P K ISRKI+N Sbjct: 68 HLDNNRDLKKGDYFLVEVLREATELKSANVTSLITIPGTYVVVNP-MEKALKISRKISNS 126 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +KE + + G+ +R++ + I+ + + L + D + S+ P Sbjct: 127 KFINEVKEQLKDVST---YGITVRSSAENVDINIIREEVQALNIVVDKIIAKGKYSLKPQ 183 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 L+Y++G + R +RD IIV K Y K+ ++ L S + +E+ IF Sbjct: 184 LIYDDGGALGRILRDYINDGTKRIIVDDIKNYDLVKENIEKLHSSAE--LIMHEESRGIF 241 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ +L +V L S GY+II +TEAL SIDVNSG+ST E I TA +TNLEA Sbjct: 242 DCYSIEKEILALRHKKVVLKSGGYIIIEKTEALYSIDVNSGKSTGEVAISKTAFKTNLEA 301 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEIARQ+ LR+L+G+IV+DFI+M++KK V K L+ + KKD + + ++ L++ Sbjct: 302 AEEIARQIILRNLSGIIVIDFINMKDKKEKTEVIKILEAAFKKDNNKTTIYPFTDVNLVQ 361 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++R++ + + C +C G G + L I + + Q+ ++ S Sbjct: 362 ITRKKRGKDIGSFLEESCKHCGGEGARLKWDYLKLLIKNQLIKLKGQHITKEFVITIDSK 421 Query: 527 VVLYLLNQKRATIVEYE--------------ARFGVSINVVIGIELADKLFYI 565 + + I E + V + + + I Sbjct: 422 YKSEVQKKLTEFITFIEGHDCLLYLLYLDNFNSYKVEPVIFDSQRKNLQEYKI 474 Score = 65.0 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 N++ I+ R+ + ++ E E ++ + G IYL V + P+++ AF+D G Sbjct: 2 NEIFIEKDKPY-LRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDIG 60 Query: 63 GNRHGFLPF 71 + F+ Sbjct: 61 KAKDAFMHL 69 >gi|255527003|ref|ZP_05393895.1| ribonuclease [Clostridium carboxidivorans P7] gi|255509313|gb|EET85661.1| ribonuclease [Clostridium carboxidivorans P7] Length = 386 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 174/346 (50%), Gaps = 6/346 (1%) Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 GNKGA VT +S+ G+Y VLM + + D + +A L+ P +G++ Sbjct: 1 MGNKGAKVTNVISIPGKYCVLMTMNKEVTFSRKI----QDGLLKQSMAEQLKKPNDVGIM 56 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 +RT GA+ + +I ++ L +++N+ A L+++ G ++ R +RD + Sbjct: 57 IRTEGANASIDDINKEISKLYSIYNNINNEAKYFNKFGLLFDNGGILGRVLRDRLNNNCK 116 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 + + + + + V+ Y+D +F GIE ++ SL V L Sbjct: 117 --VYANTEEDVQYINEFLADSLYGKVSVKLYDDNRTLFDYYGIEREILSLRNNRVYLKCG 174 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 GY++I++TEA+ IDVNSG++ + IE TA TN +AAEEIARQ+ LR+L+G+IV+DFI Sbjct: 175 GYIVIDRTEAMYVIDVNSGKNVKSSSIEKTAYITNYQAAEEIARQIELRNLSGIIVIDFI 234 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488 DM+ ++N + +KL+E + D+ + + + L++++R+R S+ + + C C Sbjct: 235 DMDNEQNREKIMQKLQEGFRDDKNKTVIYPFTELNLVQIARRRSGKSIYDYLEENCELCG 294 Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 G G S V + I + + Q +I + + Sbjct: 295 GKGKKLRFSYVCMLIKNEIFKIDEQRDIKDIHIEIDEIYADNIKGD 340 >gi|28211681|ref|NP_782625.1| ribonuclease G [Clostridium tetani E88] gi|28204123|gb|AAO36562.1| ribonuclease G [Clostridium tetani E88] Length = 477 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 105/442 (23%), Positives = 198/442 (44%), Gaps = 5/442 (1%) Query: 98 TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSP 157 + D N+ E F E N V Sbjct: 2 KEIFIERQDSVFRIAIKKNNELKECYIEEDTFEPLPGEIYRGIVKNIVPGIKCAFIDIGY 61 Query: 158 EDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGE 217 + + + IK + ++VQ++KE KGA VT +S+ GRY VL ++ + Sbjct: 62 KSNCYMYLDRKFRNLDIKKGEEIMVQVLKEPIDKKGAKVTNAVSIPGRYCVLNTLDNELK 121 Query: 218 TISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRE 277 + N +K + + P +G+++RT + +K + L + V+ Sbjct: 122 FSKKINNND----FIKYVQSNINKPKDIGIMIRTKSEEVSIETLKDEINSLYERYLEVKN 177 Query: 278 LALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR 337 S L+ + ++ + +RD ++I ++ K Y+ K +++ L + Sbjct: 178 KMYYSPKVGLLMKGSGILGKILRDKLEDKNTKIYINNGKDYKYIKKYIEDLEDVNVE-LI 236 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 +E+ + GIE ++ L ++V+L G+++I +TEA+ ID+NSG++T+ I+D Sbjct: 237 LHEEKRELLDYYGIEREILKLRNSKVSLKCGGHIVIEKTEAMYVIDINSGKNTKSTSIKD 296 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 TA TN +AA EIA Q++LR+L+G+IVVDFIDM+++ V L+E +D+++V V Sbjct: 297 TAFITNKQAAIEIANQIKLRNLSGIIVVDFIDMKDEDKKEEVINLLREGFSEDKSKVVVY 356 Query: 458 AISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAH 517 + L++++R+R+ + E + C C G G S V I +++ + Sbjct: 357 PFTELNLVQITRRRMGKVLYEYIDEPCKICNGKGRRIKMSYVEFLIKNEIQKDRAMNHIY 416 Query: 518 NIIVHTHSDVVLYLLNQKRATI 539 + + ++V L+Q I Sbjct: 417 IELNEMYEEIVEENLSQFIYEI 438 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 84/272 (30%), Gaps = 18/272 (6%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ R+ + ++N ++E E + + + G IY V + P ++ AF+D G Sbjct: 2 KEIFIER-QDSVFRIAIKKNNELKECYIEEDTFEPLPGEIYRGIVKNIVPGIKCAFIDIG 60 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQ----ALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 + ++ DR+ + K I + D + Sbjct: 61 YKSNCYMYL-------------DRKFRNLDIKKGEEIMVQVLKEPIDKKGAKVTNAVSIP 107 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 V + + ++ + V + + + K + + Sbjct: 108 GRYCVLNTLDNELKFSKKINNNDFIKYVQSNINKPKDIGIMIRTKSEEVSIETLKDEINS 167 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 + + + + V + +G ++ + + + I N D K +K+ Sbjct: 168 LYERYLEVKNKMYYSPKVGLLMKGSGILGKILRDKLEDKNTKIYINNGKDYKYIKKYIED 227 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 LE ++ I+R+ L Sbjct: 228 LEDVNVELILHEEKRELLDYYGIEREILKLRN 259 >gi|323486887|ref|ZP_08092203.1| cytoplasmic axial filament protein [Clostridium symbiosum WAL-14163] gi|323399750|gb|EGA92132.1| cytoplasmic axial filament protein [Clostridium symbiosum WAL-14163] Length = 395 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 3/309 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN--PVDRKNL 232 K ++VQ+ ++ K +++ L+ G+YSV+ ++ ++ + K Sbjct: 76 KQGDEIIVQVSRDAVKTKDPVLSSNLNFTGKYSVVTLGKTQIGFSAKITDPVWKEEVKEY 135 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + G GVI+RT TK I + L + D + A N L+ Sbjct: 136 LLALKEETGRNGFGVIVRTNAKETTKEVIGGEVLALKQRMDELLAKAENRTCFTLLEGAE 195 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGI 351 ++RD Y + +I + Y E + ++ K ++ + P+ + Sbjct: 196 PSFILSLRDTYAGSLQSVITDDKICYEEMRRYLDKNQKADLEKLQFYQDPLLPLIKLYKL 255 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E L+ + V L S GY++I TEAL +DVN+G+ + + EDT L+ NLEAA E A Sbjct: 256 EAALEEALERRVWLKSGGYLVIEPTEALTVVDVNTGKYSGKKNAEDTILKINLEAAAETA 315 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQL LR+L+G+I+VDFIDM +++ + + L+E LKKD + + ++ GL+E++R++ Sbjct: 316 RQLCLRNLSGIIIVDFIDMAREEHKQQLLTALEEELKKDPVKTVLVDMTKLGLVEITRKK 375 Query: 472 IRSSVLEST 480 +R + E Sbjct: 376 VRKPLHEVY 384 Score = 60.8 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 28 LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 L E E + GNIY+ KV + ++ AAF+D GG + G+ E Sbjct: 9 LSLEPEESGCLLGNIYIGKVKNIVKNINAAFIDLGGGKTGYYSLSE 54 >gi|34762570|ref|ZP_00143566.1| Ribonuclease G [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887791|gb|EAA24864.1| Ribonuclease G [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 432 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 182/374 (48%), Gaps = 7/374 (1%) Query: 178 QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIAR 237 L+VQ E R KGA +T S+ G VL+P SK +IS+KI + + LK Sbjct: 57 DKLIVQAETEPRDEKGAKLTLDYSINGENLVLLP-KSKNLSISKKIKDIEEINRLK---- 111 Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 + + G+ILRT +++ + ++ + DN ++ L+Y+ +++K+ Sbjct: 112 NIFLNVNNGLILRTNSKGKSEENLLEEYR-RLENIDNQINKDFEKISVGLLYDVNSILKK 170 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDS 357 + II ++ + +R+Y IF I Q++ Sbjct: 171 VVALFDDSIEKFIIDDEHIFKEIKYLLEEIGKKDLIKKLRKYFKDEDIFEYYNINSQIER 230 Query: 358 LHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLR 417 +V L S Y+II +TEAL+SIDVN+G++T ++ QTNLEA +EIARQ++LR Sbjct: 231 ALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQTNLEATKEIARQIKLR 290 Query: 418 DLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVL 477 +LAG+I++DFIDM++ N + + ++ K+ L KD+ + +N GL++ +R+R + Sbjct: 291 NLAGIIIIDFIDMKKFSNKKRILERFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELA 350 Query: 478 ESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-KR 536 + C YC+G GY S+ + L++L + + I++ T D++ L Sbjct: 351 LYYREKCQYCEGIGYFLSKDRIILNLLEDLNNQIKSQDIKKIVIRTKKDIIKELNKYIDN 410 Query: 537 ATIVEYEARFGVSI 550 I E I Sbjct: 411 NKIEYIEDNNFYKI 424 Score = 53.8 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 29 DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88 E ++++I GNIY V + + + FVD G ++ L F E D + D+ Sbjct: 2 YIERNNQQEISGNIYKGMVVDILNNGEIIFVDIGLEKNALLSF-ENKKDIPKYNIDDKLI 60 Query: 89 LLKESNIAQTDSEAVADDVT---HGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 + E+ + D + V +P +L I + + ++I N+ Sbjct: 61 VQAETEPRDEKGAKLTLDYSINGENLVLLPKSKNLSISKKIKDIEEINRLKNIFLNVNNG 120 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEV 173 + + KG S E++ ++++R I Sbjct: 121 LILRTNSKGKSEENLLEEYRRLENIDNQ 148 >gi|323691929|ref|ZP_08106180.1| ribonuclease G [Clostridium symbiosum WAL-14673] gi|323504014|gb|EGB19825.1| ribonuclease G [Clostridium symbiosum WAL-14673] Length = 395 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 3/309 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN--PVDRKNL 232 K ++VQ+ ++ K +++ L+ G+YSV+ ++ ++ + K Sbjct: 76 KQGDEIIVQVSRDAVKTKDPVLSSNLNFTGKYSVVTLGKTQIGFSAKITDPVWKEEVKEY 135 Query: 233 KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 + G GVI+RT TK I + L + D + A N L+ Sbjct: 136 LLALKEETGRNGFGVIVRTNAKETTKEVIGGEVLALKQRMDELLAKAENRTCFTLLEGAE 195 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGI 351 ++RD Y + +I + Y E + ++ K ++ + P+ + Sbjct: 196 PSFILSLRDTYAGSLQSVITDDKICYEEMRRYLDKNQKADLEKLQFYQDPLLPLIKLYKL 255 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E L+ + V L S GY++I TEAL +DVN+G+ + + EDT L+ NLEAA E A Sbjct: 256 EAALEEALERRVWLKSGGYLVIEPTEALTVVDVNTGKYSGKKNAEDTILKINLEAAAETA 315 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQL LR+L+G+I+VDFIDM +++ + + L+E LKKD + + ++ GL+E++R++ Sbjct: 316 RQLCLRNLSGIIIVDFIDMAREEHKQQLLTALEEELKKDPVKTVLVDMTKLGLVEITRKK 375 Query: 472 IRSSVLEST 480 +R + E Sbjct: 376 VRKPLHEVY 384 Score = 61.9 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 28 LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 L E E + GNIY+ KV + ++ AAF+D GG + G+ E Sbjct: 9 LSLEPEESGSLLGNIYIGKVKNIVKNINAAFIDLGGGKTGYYSLSE 54 >gi|168215758|ref|ZP_02641383.1| ribonuclease, Rne/Rng family [Clostridium perfringens NCTC 8239] gi|182382146|gb|EDT79625.1| ribonuclease, Rne/Rng family [Clostridium perfringens NCTC 8239] Length = 480 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 7/368 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++V+++KE+ G+KGA VT+ +SLAGRY VL + +ISRKI N +K L++ Sbjct: 77 KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLEFKKELEK 135 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 L P+ +GV +RT S + EI+ + E L R + V S+ P + +G+L Sbjct: 136 ---SLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I + IRD S IIV + Y KD + S V Y+D +F GIE + Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + SL V L G ++I +TEA+ IDVNSG++T E TA +TN AA EIARQ+ Sbjct: 250 ILSLRNKRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 ++R+L G+I+VDFIDM ++N + + + LK+ K D R ++ + GL++++R R Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILEILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ E + C C G G S + L + + + + + + +S + Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429 Query: 535 KRATIVEY 542 + E Sbjct: 430 IFEFLKEI 437 Score = 66.5 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV + ++N + E E E + ++G IY V RV P +++AF+D G ++ Sbjct: 14 RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65 Query: 76 PDYYQIPFSDRQALLKESNIAQTDSEA 102 Y I D + L + I + Sbjct: 66 ---YMILGEDEKDLKQGDGIIVEVLKE 89 >gi|254302543|ref|ZP_04969901.1| ribonuclease G [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322735|gb|EDK87985.1| ribonuclease G [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 458 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 112/437 (25%), Positives = 198/437 (45%), Gaps = 14/437 (3%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR---- 177 E + E + I+ N V+ + G + ++ + K Sbjct: 20 EDNKLDEMYIERNNQKEITGNIYKGKVVDILNSGEIIFLDIGLEKNALLSFENKKDIPKL 79 Query: 178 ---QILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 L+V+I E R KGA ++ S+ G VL+P SK +IS+KI + + LK Sbjct: 80 NIDDKLIVEIETEPRDEKGAKLSLDYSINGENLVLLP-KSKNLSISKKIKDIEEVNRLK- 137 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + + G+ILRT +TK + +++ ++ + + L+Y+ ++ Sbjct: 138 ---NIFLNIDNGLILRTNSEGKTKESLLEEYKD-LKNIETQINKEFEKINIGLLYDVNSI 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 +K+A+ II ++ + +R+Y IF I Q Sbjct: 194 LKKAVTLFDDSIEEFIIDDKNIFEEIKVLLEEIGKKDLIKKLRKYFKDEEIFEYYNINSQ 253 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++ +V L S Y++I +TEAL+SIDVN+G++ ++ QTNLEA +EIARQ+ Sbjct: 254 IERALDRKVYLDSGAYIVIEKTEALISIDVNTGQNIGNKTSQELIFQTNLEATKEIARQI 313 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 +LR+LAG+I+VDFIDM++ + + + ++ K L +DR + +N GL++ +R+R Sbjct: 314 KLRNLAGIIIVDFIDMKKISDRKRILEEFKRYLSEDRVEINSLEYTNLGLIQFTRKRQGK 373 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 + + C YC+G GY S+ + L++L + + I+V T DV+ L Sbjct: 374 ELALYYREKCQYCEGTGYFFSKDRIILNLLEDLNSQIKSQDIKKILVKTKKDVIKELNKY 433 Query: 535 -KRATIVEYEARFGVSI 550 I E I Sbjct: 434 IDNNKIEYIEDNNFYKI 450 Score = 80.4 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 21/176 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + E ++ +L DN+++E+ E ++K+I GNIY KV + S + F+D G Sbjct: 2 KKYLILSKSSYEIKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNSGEIIFLDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ L F N + D + T P D + Sbjct: 62 LEKNALLSF---------------------ENKKDIPKLNIDDKLIVEIETEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 ++ + + E S N + ++D++ + I + Sbjct: 101 LSLDYSINGENLVLLPKSKNLSISKKIKDIEEVNRLKNIFLNIDNGLILRTNSEGK 156 >gi|182419806|ref|ZP_02951046.1| ribonuclease, Rne/Rng family [Clostridium butyricum 5521] gi|237666416|ref|ZP_04526401.1| ribonuclease, Rne/Rng family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376354|gb|EDT73936.1| ribonuclease, Rne/Rng family [Clostridium butyricum 5521] gi|237657615|gb|EEP55170.1| ribonuclease, Rne/Rng family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 482 Score = 167 bits (422), Expect = 7e-39, Method: Composition-based stats. Identities = 112/427 (26%), Positives = 205/427 (48%), Gaps = 7/427 (1%) Query: 116 NDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIK 175 N+ +E + N E N + + + IK Sbjct: 20 NNELVESIVEEQNDEPIIGEIYKAKVKNILPAINSIFIDMGLSKEGYMYYGNDLKAANIK 79 Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +LV++VKE +KGA ++ +S+ G+Y VL ++G + S++IT+ + KEI Sbjct: 80 KGDDILVEVVKEPINDKGAKLSHKVSIPGKYVVLNC-YNQGISFSKRITDEIR---KKEI 135 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 ++ + + +RT G + ++++ + L ++N++ S +Y E + Sbjct: 136 LDNIKPLDDVSITIRTEGINTDINILQKEIDKLYGEFENIKRKMKYSNELKKLYGEDPTL 195 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 R +R+ Y + ++I V + + + +K + V +Y +F GIE +L Sbjct: 196 NRLLRNSYNDENTKIYVDNDSDFEKI---LKFIGEEKELQVEKYNGYRNLFDCYGIEKEL 252 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 L +V L GY++I++TEA+ IDVNSG++ +E T L+TNLEAA+EI +Q+R Sbjct: 253 IKLRHNKVNLHCGGYIVIDKTEAMYVIDVNSGKNIKERNFNKTILETNLEAAKEIGKQIR 312 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+L+G+IVVDFIDM ++K V +L SLK+D+ V++ + L++++R+R S Sbjct: 313 LRNLSGIIVVDFIDMRDRKQKEIVMSELYSSLKEDKGNVKIFPFTELDLVQIARRRQGKS 372 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 + E + C+ CKG G I S + I + + + + + S + + Sbjct: 373 IYEYMEEECSRCKGRGIILKLSYIEGLIRNEIIRMKEENSIDSFKIEIDSVYKDRIKDDI 432 Query: 536 RATIVEY 542 + I E Sbjct: 433 FSFIKEI 439 Score = 60.8 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ R+ V +N + E E ++ + I G IY AKV + P++ + F+D G Sbjct: 2 KEIFIERRE-NILRIAVKVNNELVESIVEEQNDEPIIGEIYKAKVKNILPAINSIFIDMG 60 Query: 63 GNRHGFLPF 71 ++ G++ + Sbjct: 61 LSKEGYMYY 69 >gi|168212832|ref|ZP_02638457.1| ribonuclease, Rne/Rng family [Clostridium perfringens CPE str. F4969] gi|170715543|gb|EDT27725.1| ribonuclease, Rne/Rng family [Clostridium perfringens CPE str. F4969] Length = 480 Score = 167 bits (422), Expect = 7e-39, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++V+++KE+ G+KGA VT+ +SLAGRY VL + +ISRKI N KE Sbjct: 77 KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L P+ +GV +RT S + EI+ + E L R + V S+ P + +G+L Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I + IRD S IIV + Y KD + S V Y+D +F GIE + Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + SL V L G ++I +TEA+ IDVNSG++T E TA +TN AA EIARQ+ Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 ++R+L G+I+VDFIDM ++N + + + LK+ K D R ++ + GL++++R R Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILEILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ E + C C G G S + L + + + + + + +S + Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429 Query: 535 KRATIVEY 542 + E Sbjct: 430 IFEFLKEI 437 Score = 66.5 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV + ++N + E E E + ++G IY V RV P +++AF+D G ++ Sbjct: 14 RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65 Query: 76 PDYYQIPFSDRQALLKESNIAQTDSEA 102 Y I D + L + I + Sbjct: 66 ---YMILGEDEKDLKQGDGIIVEVLKE 89 >gi|110798631|ref|YP_696809.1| ribonuclease [Clostridium perfringens ATCC 13124] gi|168208833|ref|ZP_02634458.1| ribonuclease, Rne/Rng family [Clostridium perfringens B str. ATCC 3626] gi|182623993|ref|ZP_02951781.1| ribonuclease, Rne/Rng family [Clostridium perfringens D str. JGS1721] gi|110673278|gb|ABG82265.1| ribonuclease, Rne/Rng family [Clostridium perfringens ATCC 13124] gi|170713200|gb|EDT25382.1| ribonuclease, Rne/Rng family [Clostridium perfringens B str. ATCC 3626] gi|177910886|gb|EDT73240.1| ribonuclease, Rne/Rng family [Clostridium perfringens D str. JGS1721] Length = 480 Score = 167 bits (421), Expect = 8e-39, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++V+++KE+ G+KGA VT+ +SLAGRY VL + +ISRKI + KE Sbjct: 77 KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIEDLE---FKKE 132 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L P+ +GV +RT S + EI+ + E L R + V S+ P + +G+L Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I + IRD S IIV + Y KD + S V Y+D +F GIE + Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + SL V L G ++I +TEA+ IDVNSG++T E TA +TN AA EIARQ+ Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 ++R+L G+I+VDFIDM ++N + + + LK+ K D R ++ + GL++++R R Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILEILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ E + C C G G S + L + + + + + + +S + Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429 Query: 535 KRATIVEY 542 + E Sbjct: 430 IFEFLKEI 437 Score = 65.8 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV + ++N + E E E + ++G IY V RV P +++AF+D G ++ ++ E Sbjct: 14 RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQAYMILGEEE 73 Query: 76 PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEE 135 D Q + L ++ + V + + + I + + E Sbjct: 74 KDLKQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSRNDISISRKIEDLEFKKEL 133 Query: 136 ESIISANND 144 E+ + ++ Sbjct: 134 ENSLIKPSE 142 >gi|237743504|ref|ZP_04573985.1| ribonuclease G [Fusobacterium sp. 7_1] gi|229433283|gb|EEO43495.1| ribonuclease G [Fusobacterium sp. 7_1] Length = 458 Score = 167 bits (421), Expect = 8e-39, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 204/453 (45%), Gaps = 14/453 (3%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + E Sbjct: 7 LSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+P SK +ISR Sbjct: 67 LLSFENKKKVPKFNIDDKLIVQTESEPRDEKGAKLTLDYSINGENLVLLP-KSKNISISR 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK I + G+ILRT +++ + ++ + DN Sbjct: 126 KIKDIEEINRLKNIFLSI----DNGLILRTNSEEKSEESLLEEYRK-LEDIDNQINKDFE 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + L+Y+ +++K+A+ II K + +R+Y Sbjct: 181 KINIGLLYDVNSILKKAVTLFDDTIEEFIIDDEHIFEEIKILLEKTGKKDLIKKLRKYFK 240 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++ ++ Q Sbjct: 241 DEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNIGNKTSQELIFQ 300 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEA +EIARQ++LR+LAG+I+VDFIDM++ + + V ++ K+ L +D+A +N Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRVLEEFKKYLSEDKAEKNSVEYTN 360 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++ +R+R + + C YC+G GY S+ + L++L + + I++ Sbjct: 361 LGLIQFTRKRQGKELAFYYKEKCQYCEGTGYFLSKDRIILNLLEDLNSQIKSQDIKKIVI 420 Query: 522 HTHSDVV----LYLLNQKRATIVEYEARFGVSI 550 D++ Y+ N K I E I Sbjct: 421 RAKKDIIKELNKYINNNK---IKYIEDNNFYKI 450 Score = 79.6 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 21/168 (12%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++ +L DN+++E+ E ++K+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLALLEDNKLDEMYIERNNQKEITGNIYKGKVVDILNNGEIIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ L F N + + D + + P D + Sbjct: 62 LEKNALLSF---------------------ENKKKVPKFNIDDKLIVQTESEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 + + + E S N + ++D++ + I Sbjct: 101 LTLDYSINGENLVLLPKSKNISISRKIKDIEEINRLKNIFLSIDNGLI 148 >gi|256846345|ref|ZP_05551802.1| ribonuclease G [Fusobacterium sp. 3_1_36A2] gi|256718114|gb|EEU31670.1| ribonuclease G [Fusobacterium sp. 3_1_36A2] Length = 458 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 116/444 (26%), Positives = 205/444 (46%), Gaps = 11/444 (2%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + E Sbjct: 7 LSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+ SK +IS+ Sbjct: 67 FLSFENKKNIPKFNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLL-LKSKNLSISK 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK I + G+ILRT +++ + ++ + +N Sbjct: 126 KIKDIEEVNRLKNIFLSI----DNGLILRTNSKGKSEESLLEEYRK-LEDINNQINKDFE 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + ++Y+ ++ K+A+ L II ++ + +R+Y Sbjct: 181 KINIGVLYDVNSISKKAVILLDDTVEEFIIDDKNIFEEIKVLLEEIGKKDLIKKLRKYFK 240 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++T ++ Q Sbjct: 241 DEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEA +EIARQ++LR+LAG+I+VDFIDM++ + + + ++ K+ L +DR + +N Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRILEEFKKYLNEDRTEINSVEYTN 360 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIV 521 GL++ +R+R + + C YC+G GY S+ V L++L + + I++ Sbjct: 361 LGLIQFTRKRQGKELAFYYREKCLYCEGTGYFLSKDRVILNLLEDLNSQIKSQDIKKIVI 420 Query: 522 HTHSDVV----LYLLNQKRATIVE 541 T D++ Y+ N K I + Sbjct: 421 RTKKDIIKELNKYINNNKIECIED 444 Score = 85.0 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 21/176 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++ +L DN+++E+ E +KK+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ FL F N + D + T P D + Sbjct: 62 LEKNAFLSF---------------------ENKKNIPKFNIDDKLIVQAETEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + + + E + S N + ++D++ + I + Sbjct: 101 LTLDYSINGENLVLLLKSKNLSISKKIKDIEEVNRLKNIFLSIDNGLILRTNSKGK 156 >gi|308070394|ref|YP_003871999.1| ribonuclease [Paenibacillus polymyxa E681] gi|305859673|gb|ADM71461.1| Ribonuclease [Paenibacillus polymyxa E681] Length = 394 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 173/309 (55%), Gaps = 2/309 (0%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 + I EV+K Q ++VQ++KE G+KGA VTT+ SL GR+ V MP + Sbjct: 84 KPSISEVLKVGQEIVVQVLKEAVGSKGARVTTHFSLPGRWIVYMPRADYVAVSKKIEREG 143 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + + G+I+RT + I+ D L + W ++ A AP Sbjct: 144 ERIR--LKAMGEQLRTSEEGLIIRTVSEDMSIEAIENDLNQLRKQWATIQRKAGEHSAPC 201 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++ + ++++R IRD++ + E+++ E+ ++A+ ++ + P+ A + IF Sbjct: 202 ELHRDLSIVQRLIRDVFTPEQDELVIDSEEQAKDAEIMLQQIGPAKAHVSIFRGAEETIF 261 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 GI QL+ +V L GY++I+ TEAL IDVN+G+ T +E+T QTN+EA Sbjct: 262 KAYGIHEQLERDFARKVWLQGGGYIVIDHTEALTVIDVNTGKFTGGSNLEETVTQTNIEA 321 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEIAR +R+RD+ G+I++DFIDME+++N R V L+ LKKDR + V + GLLE Sbjct: 322 AEEIARLVRVRDIGGIIIIDFIDMEQEENRREVSSVLEARLKKDRTKSYVVGWTRLGLLE 381 Query: 467 MSRQRIRSS 475 M+R+++R Sbjct: 382 MTRKKVREE 390 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 K +I + T++ +L + R+ E E K+ I G+ + A+V V P +QAAFVD G Sbjct: 2 KQMIVQCQQQMTQMALLEEGRLVEYAAELPRKRGILGSFFKARVVNVLPGMQAAFVDIGQ 61 Query: 64 NRHGFLPFLEI 74 ++ FL ++ Sbjct: 62 RKNAFLYVDDV 72 >gi|304407519|ref|ZP_07389171.1| ribonuclease, Rne/Rng family [Paenibacillus curdlanolyticus YK9] gi|304343470|gb|EFM09312.1| ribonuclease, Rne/Rng family [Paenibacillus curdlanolyticus YK9] Length = 413 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 4/320 (1%) Query: 161 PKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETIS 220 + K + I++V++ Q L VQ+++E G KGA VT ++SL GR+ V MP+ Sbjct: 90 KNQNKEKPSIRDVLRIGQELTVQVIREASGVKGARVTMHVSLPGRWLVYMPSAGYVGVSR 149 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 + + ++ + A GVILRTA A + D L W + LA Sbjct: 150 KI--DDEKKRERLRLFGERMRLAEEGVILRTAAAEVMDAALSDDLSSLRERWQKIAGLAK 207 Query: 281 NSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYE 340 AP +++E LI R +RD+ D EI V E + + ++ + P R V+ Y Sbjct: 208 QRKAPAELHQEAGLIYRIVRDMLTADTDEIWVDEEAIFEQTVALVREMAPGSERKVKLYP 267 Query: 341 --DPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT 398 +F ++ Q +S V L S GY++ ++TEAL IDVN+G+ +EDT Sbjct: 268 AASKASLFAHHDVDRQTESAFSRIVQLASGGYIVWDETEALTVIDVNTGKFIGTDKLEDT 327 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 +TN EAAE IAR LRLRD G+I++DFIDMEE+ N + + ++L+E +++DR+R V Sbjct: 328 LYRTNSEAAEAIARLLRLRDTGGIIIIDFIDMEEEMNRQRISQQLEELVRRDRSRCTVVG 387 Query: 459 ISNFGLLEMSRQRIRSSVLE 478 + GL+E++R++ R++ Sbjct: 388 WTRLGLMEITRKKARATAAS 407 Score = 83.9 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 21/89 (23%) Query: 1 MA--NKMLIDASHVEETRV-----VVLRDNRVEELDFESEHKKQ--------IKGNIYLA 45 M+ ++L+ + RV VL + + + E + +Q + GNIY Sbjct: 1 MSVLKQLLV------QCRVGGVQAAVLENRVLADYASERQDPEQPGRTQPGAVLGNIYRG 54 Query: 46 KVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 KV V P +QAAF+D G ++ FL ++ Sbjct: 55 KVVNVLPGMQAAFLDIGLAKNAFLYIDDV 83 >gi|253577863|ref|ZP_04855135.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850181|gb|EES78139.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 398 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 1/305 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K +LVQI +E K AVTT L+ G+Y VL K S+ + R + Sbjct: 89 KAGDEILVQISREAMKGKLPAVTTNLNFTGKYLVLTTGDKKFGLSSKLSNDDRSRISKWM 148 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 A G+I+RT A +K EI ++ EYL L+ + VY Sbjct: 149 EAEVNRPDKEFGIIVRTNAADASKEEILKELEYLKGLYHKAAVDGRSRTCFSCVYRTEPF 208 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI-FFRSGIEV 353 A+RD +++ EII + R+ D++ P +R Y+D + +E Sbjct: 209 YISAVRDANSRNLEEIITDIPEISRQISDYLNSNSPEEKEKLRFYDDKLLPLYKLYRLET 268 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 L+ + +V L S G+++I QTEA VSIDVNSG+ T + +++T + NLEAA+EIARQ Sbjct: 269 VLEEIQHEKVWLNSGGFLVIQQTEAFVSIDVNSGKFTGKKKMQETYRKINLEAAKEIARQ 328 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR+L+G+I++DFI+ME + + + L++ L+KD + + I+ +LE++R+++R Sbjct: 329 LRLRNLSGIILIDFINMENQDHQDELFHVLQKYLRKDPVKAKAVDITPLHILELTRKKVR 388 Query: 474 SSVLE 478 V+E Sbjct: 389 KPVIE 393 Score = 51.1 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 23/41 (56%) Query: 21 RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 D +V EL FE +K GNIY+ ++ + ++ AAFV Sbjct: 20 EDGKVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQI 60 >gi|310643573|ref|YP_003948331.1| ribonuclease, rne/rng family [Paenibacillus polymyxa SC2] gi|309248523|gb|ADO58090.1| Ribonuclease, Rne/Rng family [Paenibacillus polymyxa SC2] Length = 380 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 171/309 (55%), Gaps = 2/309 (0%) Query: 167 QYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP 226 + I E++K Q ++VQ++KE G+KGA VTT+ SL GR+ V MP + Sbjct: 70 KPSISELLKVGQEIVVQVLKEAVGSKGARVTTHFSLPGRWIVYMPRADYVAVSKKIEREG 129 Query: 227 VDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 + + GVI+RT + I+ D L + W ++ A AP Sbjct: 130 ERAR--LKAMGEQLRTGEEGVIIRTVSEEMSIEAIENDLNQLRKQWAAIQRKAGEHSAPC 187 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF 346 ++ + ++++R IRD++ + E+++ E+ ++A+ ++ + + A + IF Sbjct: 188 ELHRDLSIVQRLIRDVFTPEQDELVIDSEEQAKDAEVMLQQIGSAKAHVSIFRSAEETIF 247 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 GI QL+ +V L GY++I+ TEAL +DVN+G+ T +E+T QTN+EA Sbjct: 248 KAYGIHEQLERDFARKVWLQGGGYIVIDHTEALTVVDVNTGKFTGGSNLEETVTQTNIEA 307 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEIAR +R+RD+ G+I++DFIDME+++N R V L+ LKKDR + V + GLLE Sbjct: 308 AEEIARLVRVRDIGGIIIIDFIDMEQEENRREVSSVLEARLKKDRTKSYVVGWTRLGLLE 367 Query: 467 MSRQRIRSS 475 M+R+++R Sbjct: 368 MTRKKVREE 376 Score = 83.9 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 + +L + R+ E E K+ I G+ + A+V V P +QAAFVD G ++ FL ++ Sbjct: 1 MALLEEGRLVEYAAELPRKRGILGSFFKARVVNVLPGMQAAFVDIGQRKNAFLYVDDV 58 >gi|150015397|ref|YP_001307651.1| ribonuclease [Clostridium beijerinckii NCIMB 8052] gi|149901862|gb|ABR32695.1| ribonuclease, Rne/Rng family [Clostridium beijerinckii NCIMB 8052] Length = 482 Score = 164 bits (415), Expect = 4e-38, Method: Composition-based stats. Identities = 108/429 (25%), Positives = 193/429 (44%), Gaps = 7/429 (1%) Query: 114 IPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEV 173 N+ +E + + E N + + + + + Sbjct: 18 KSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGLDKEGYLYYSDELKAKG 77 Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 IK +LV+++KE +KGA +T +S+ G+Y VL +G S++I + + L Sbjct: 78 IKKGDDILVEVLKEPLNDKGAKLTAKVSIPGKYIVLNCYE-QGIEFSKRIEDKEKKIELL 136 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 L+ + + +RT GA+ +K + L + N+ + +S+ +Y E Sbjct: 137 SNIEPLK---DVCITVRTEGANVDINILKNEISKLYDEFQNIDKKMKHSLGVRKIYGEDL 193 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 + + + + ++I +I V + + F K Y +F GIE Sbjct: 194 TLTKLLMNFSGEEIIKIYVDNSIDFDKISSFAKGQENLKIEKYEGYRK---LFDFYGIEK 250 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 +L L +V L GY++I++TEA+ IDVNSG++ +E T L+TNLEAA EI +Q Sbjct: 251 ELLRLRHNKVNLQCGGYIVIDRTEAMYVIDVNSGKNIKEKSFNKTILETNLEAAREIGKQ 310 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR+L+G+IV+DFIDM +K V LKESL+ D+ V++ + L++++R+R Sbjct: 311 IRLRNLSGIIVIDFIDMRDKSQRDIVMDALKESLRLDKGNVKIFPFTQLDLVQIARKRQG 370 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ E + C+ CKG G I S + I + + + + + S + Sbjct: 371 KSIYEYMEEECSLCKGRGIILKLSYIEGLIKNDIVRMQEESSINCFHIQMDSVYKDRIRE 430 Query: 534 QKRATIVEY 542 + E Sbjct: 431 NIFEFMKEI 439 Score = 75.0 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 51/449 (11%), Positives = 127/449 (28%), Gaps = 32/449 (7%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV + +N + E E + I G IY K+ + P++ + FVD G ++ G+L + + Sbjct: 14 RVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGLDKEGYLYYSD-- 71 Query: 76 PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEE 135 + DD+ + P + ++ + + Sbjct: 72 -------------------ELKAKGIKKGDDILVEVLKEPLNDKGAKLTAKVSIPGKYIV 112 Query: 136 ESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAA 195 + + +ED + + + CI + + I+K E Sbjct: 113 LNCYEQGIEFSKRIEDKEKKIELLSNIEPLKDVCITVRT-EGANVDINILKNEISKLYDE 171 Query: 196 VTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR--TAG 253 + + T+++ + N + +K + + Sbjct: 172 FQNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNSIDFDKISSFAKGQENL 231 Query: 254 ASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRA-IRDLYCKDISEIIV 312 ++ F++ + +R Y + + + D+ + Sbjct: 232 KIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMYVIDVNSGKNIKEKS 291 Query: 313 SGEKGYREAKDFMKL--LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 + + + + + + + L Sbjct: 292 FNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVMDALKESLRLDKGNV 351 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 I +D+ R+ ++ + L+L + GLI D + M Sbjct: 352 KIF----PFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGIILKLSYIEGLIKNDIVRM 407 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAI 459 +E+ + ++ +S+ KDR R + Sbjct: 408 QEESSINCFHIQM-DSVYKDRIRENIFEF 435 >gi|15894538|ref|NP_347887.1| ribonuclease G/E family protein [Clostridium acetobutylicum ATCC 824] gi|15024182|gb|AAK79227.1|AE007638_9 Ribonucleases G/E family protein [Clostridium acetobutylicum ATCC 824] gi|325508671|gb|ADZ20307.1| Ribonuclease G/E family protein [Clostridium acetobutylicum EA 2018] Length = 481 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 198/417 (47%), Gaps = 20/417 (4%) Query: 164 FKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKI 223 + IK +LV+IVKE G+KG V+ +++ GRYSV++ + IS+KI Sbjct: 68 YMDSKFNNVNIKKGDEMLVEIVKESIGSKGPKVSNAITIPGRYSVIIT-LNTDINISKKI 126 Query: 224 TNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSV 283 ++ K LKE + E +GV++RT + + +I + E L + +R+ A S Sbjct: 127 SDSKYIKMLKENVKKPE---DVGVMIRTNAQNVSLEDINNEIENLYETYVGIRKKAKYSN 183 Query: 284 APHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 +VY G I+R +RD ++V+ +K + ++++ L ++ ++ Sbjct: 184 KVGIVYNAGGTIERIMRDNEDVADLTVVVNDKKDFDNIQNYI-LTKKDMKCNLKLHDSNI 242 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 + G E ++ L +V L GY+II+ TEA+ IDVNSG++ + + TA TN Sbjct: 243 SLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEAMHVIDVNSGKNIKNSNLARTAFLTN 302 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 +EAA+E ARQ+ LR+L+G+IV+DFID+ +++ + LK+ KD+ + V + Sbjct: 303 MEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSKIVNVLKQGFLKDKNKTIVYPFTELN 362 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS----VALSILRSVEEYLLQYTA--- 516 +++++R+R S+ + + C C G+G + + ++R +EE+ + Sbjct: 363 IVQIARRRRGKSIYDYLEEKCDSCIGSGRKLNFEYMKNLMRNKVIRFLEEHEKAKSIYIE 422 Query: 517 --HNIIVHTHSDVVLYLLNQKRATIV-EYEARFG---VSINVV--IGIELADKLFYI 565 DV ++ + + E + IN + + I Sbjct: 423 MDKRYENKISLDVEGFIKDIGADNLSVYIEYKSKPDVFKINFRELSSDMEKMQQYKI 479 Score = 65.0 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 17 VVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 V VL + +E E E ++ G IY V + P+++ AFVD G ++G+L Sbjct: 15 VAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDIGNGKNGYLY 68 >gi|326791197|ref|YP_004309018.1| ribonuclease E [Clostridium lentocellum DSM 5427] gi|326541961|gb|ADZ83820.1| Ribonuclease E [Clostridium lentocellum DSM 5427] Length = 475 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 171/382 (44%), Gaps = 8/382 (2%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 L VQ+VK+ G KG +T ++L GR+ V +P + G IS+KI + R+ LK+ Sbjct: 82 SPGSRLPVQVVKQNSGEKGYKLTGKVNLMGRFLVCLPFET-GINISKKIKDQEIREVLKQ 140 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L G ++RT + ++ +++D L+ D + +YE+ L Sbjct: 141 KLQCLSNGK-YGFVVRTTAKNASESLLEKDALELIEKADAFMKAKDYLSKGSQLYEDPPL 199 Query: 295 IKRAIRDL-YCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 + +R+ + EII + + + + + + +F IE Sbjct: 200 FMQIVREELEGAEKVEIICNQQSVLSAIQADIGEEDDEEHISFKLCNEIEGLFQVYDIEK 259 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 + L ++ L + G ++I+ TEA+ IDVNS ++ + L NL A +E Q Sbjct: 260 KRTQLLNRKIWLKNGGNLVIDYTEAMTVIDVNSAKAILTKNPQKAVLDLNLLAVKESILQ 319 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK--DRARVQVGAISNFGLLEMSRQR 471 + R+L+G+IV D ++M +++ + + + KE L K DR R +V +++ GLL+ SR + Sbjct: 320 MLRRNLSGIIVTDLVEMPSQEDKQYIYEYAKELLNKWGDR-RTKVYPLTDLGLLQFSRTK 378 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + + C C+ S S + + +++++ + + V +L Sbjct: 379 KYIGLPQQLFTSCIQCEAPYSGNSLSYYMMELEKTIKDISEKTEHTAVFVEVDPIFYQFL 438 Query: 532 LNQKRATIVEYEARFGVSINVV 553 L K I + E + + + + Sbjct: 439 L--KNNCIEQLENAYNLQLQIE 458 Score = 56.5 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 14/86 (16%) Query: 1 MANKMLI--DASHVEETRVVVLRDNRVEELDFE----SEHKKQIKGNIYLAKVTRVEPSL 54 M ++LI + T++ +L+++ E S+ + +I + +V +V +L Sbjct: 1 MRKQILIEKNVLS---TQIAILQESEFISFYLETCIKSDKQNRIV----VGQVEQVVKNL 53 Query: 55 QAAFVDYGGNRHGFLPFLEIHPDYYQ 80 +A FV++G ++G L ++ P+ YQ Sbjct: 54 KAVFVNFGEEKNGLLHIKQV-PECYQ 78 >gi|65321815|ref|ZP_00394774.1| COG1530: Ribonucleases G and E [Bacillus anthracis str. A2012] Length = 412 Score = 162 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 95/313 (30%), Positives = 165/313 (52%), Gaps = 11/313 (3%) Query: 172 EVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKN 231 I Q +LVQ+VKE KG +T + G+Y V MP + +SRKI N Sbjct: 71 YRIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMP-YDEMRAVSRKIKNNKR--- 126 Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +EV G I R+A EI+ + + L +L++ ++ AP L++ Sbjct: 127 -RQQLLQIEVEGTGGYIFRSASEKGEIEEIQAEMQRLQQLYEELKRKEEQGKAPLLLHRP 185 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 + R ++ + I +++V +E ++ + S+ Y + +F GI Sbjct: 186 ATFLDRVFQENPIETIEKVVVDTRSIVKELEEKVGKEKVSF------YNEKSSMFNHFGI 239 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 E +++ Q V LP+ Y+I+ Q E + IDVN+G+ T + ++DT L+TN AAEEIA Sbjct: 240 EREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGKFTGKQNLQDTVLRTNELAAEEIA 299 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLRD+ G+I++DFI+M+ +++ V + L +++ DR +V + G+LEM+R+R Sbjct: 300 RQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILEMTRKR 359 Query: 472 IRSSVLESTTKVC 484 + S+ + + C Sbjct: 360 KKHSLRDVLLEEC 372 Score = 80.4 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 14 ETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 E RV + ++ E ++ +++I G+IY+ ++ R + AAFV+ G +H +L + + Sbjct: 7 EKRVAIEEKKKIVEFLWKRNEEQEIVGHIYIGRIVRTIAGMNAAFVNIGLEKHAYLSYDD 66 Query: 74 IHPDY 78 + Y Sbjct: 67 VPSAY 71 >gi|294784573|ref|ZP_06749862.1| ribonuclease G [Fusobacterium sp. 3_1_27] gi|294487789|gb|EFG35148.1| ribonuclease G [Fusobacterium sp. 3_1_27] Length = 458 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 113/444 (25%), Positives = 200/444 (45%), Gaps = 11/444 (2%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ V + + D+ L+E+ N +E D+++N E + E Sbjct: 7 LSKSVYETKLVLLEDNKLDEMYIERNNQKEISGNIYKGKVVDILNNGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ E R KGA +T S+ G VL+ SK +IS+ Sbjct: 67 FLSFENKKNIPKFNIDDKLIVQAETEPRDEKGAKLTLDYSINGENLVLL-LKSKNLSISK 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI + + LK I + G+ILRT +++ + ++ + +N Sbjct: 126 KIKDIEEVNRLKNIFLSI----DNGLILRTNSKGKSEESLLEEYRK-LEDINNQINKDFE 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + ++Y+ ++ K+A+ L II ++ + +R+Y Sbjct: 181 KINIGVLYDVNSISKKAVILLDDTVEEFIIDDKNIFEEIKVLLEEIGKKDLIKKLRKYFK 240 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 IF I Q++ +V L S Y+II +TEAL+SIDVN+G++T ++ Q Sbjct: 241 DEEIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEALISIDVNTGQNTGNKTSQELIFQ 300 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 TNLEA +EIARQ++LR+LAG+I+VDFIDM++ + + + ++ K+ L +DR + +N Sbjct: 301 TNLEATKEIARQIKLRNLAGIIIVDFIDMKKFSDRKRILEEFKKYLNEDRTEINSVEYTN 360 Query: 462 FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT----AH 517 GL++ +R+R + + C YC+G GY S+ V L++L + + Sbjct: 361 LGLIQFTRKRQGKELAFYYREKCLYCEGTGYFLSKDRVILNLLEDLNSQIKSQDIKKIII 420 Query: 518 NIIVHTHSDVVLYLLNQKRATIVE 541 ++ Y+ N K I + Sbjct: 421 RTKKDIIKELNKYINNNKIECIED 444 Score = 83.5 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 21/176 (11%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K LI + V ET++V+L DN+++E+ E ++K+I GNIY KV + + + FVD G Sbjct: 2 KKYLILSKSVYETKLVLLEDNKLDEMYIERNNQKEISGNIYKGKVVDILNNGEIIFVDIG 61 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 ++ FL F N + D + T P D + Sbjct: 62 LEKNAFLSF---------------------ENKKNIPKFNIDDKLIVQAETEPRDEKGAK 100 Query: 123 VAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 + + + E + S N + ++D++ + I + Sbjct: 101 LTLDYSINGENLVLLLKSKNLSISKKIKDIEEVNRLKNIFLSIDNGLILRTNSKGK 156 >gi|291522331|emb|CBK80624.1| Ribonucleases G and E [Coprococcus catus GD/7] Length = 396 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 2/304 (0%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 ++VQ+ KE K +T LS GRY+VL + + +R + Sbjct: 90 GDEIVVQVEKENLKTKAWFLTGRLSFPGRYTVLTRGKNGIQISARIKDTAERDR--LTGI 147 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 E G ++RT + I + L ++ + A + + Sbjct: 148 VSGEEIEGAAWMIRTEAFGQRAEVIGEEMHRLEVDYNRIMSTACTRTCFSKLMSGDSPYT 207 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 + I+ + + Y E K+ S + +D +P+ GIE Q+D Sbjct: 208 QLIKKFAHGSTCRVTTDLPEVYDELKENFGRWGLSEEALQYYKDDSYPLIKLKGIEAQMD 267 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 Q V + S Y++I TEAL IDVN+G++ + +E+ + NLEAA+E+ RQLRL Sbjct: 268 KALQKRVWMRSGAYLVIEPTEALTVIDVNTGKAIGKQKMEENFFKINLEAAQEVCRQLRL 327 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 R+++G+++VDFI+M++ ++ +++ L+E KD + V ++ L+EM+R+++ S+ Sbjct: 328 RNISGIVIVDFINMKDPEHLKALMDVLREEAAKDSVQTTVVDRTSLHLVEMTRKKVHRSL 387 Query: 477 LEST 480 E Sbjct: 388 AEQV 391 Score = 61.5 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M +++I + + ++ + EL+ E + + G+IY+ KV + ++QAAFV+ Sbjct: 1 MKRQIVITGWQSKVL-TALYEEDTLCELNLEPKKSQVRVGDIYIGKVKHIVQNIQAAFVE 59 Query: 61 Y 61 Sbjct: 60 I 60 >gi|302386376|ref|YP_003822198.1| RNA-binding protein AU-1/Ribonuclease E/G [Clostridium saccharolyticum WM1] gi|302197004|gb|ADL04575.1| RNA-binding protein AU-1/Ribonuclease E/G [Clostridium saccharolyticum WM1] Length = 400 Score = 160 bits (405), Expect = 6e-37, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 172/372 (46%), Gaps = 5/372 (1%) Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167 V I +++ + I ++I +A D+ + + +R Sbjct: 22 ETVQVDIEPENNRPVLGNIYIGKVNHIVKNINAAFVDIGKGQMGYLSLNDAWIHFADQRP 81 Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 Y ++ ++VQ+ ++ K +T L++ GRY VL + ++ + Sbjct: 82 YE--GKLRQGDEIIVQVERDAVKTKAPVLTGNLNITGRYFVLTSGKKQIGFSTKIA-DQA 138 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 ++ +K+ G+I+RT K E++ + L + + NV + + L Sbjct: 139 WKQEIKQDLES-RKEESFGIIVRTNAYKVPKAELESELVQLKKSFKNVLDNGKHRTCYSL 197 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIF- 346 +Y +RD + ++ Y KD++ P R++ YED Sbjct: 198 LYSSAPSYLTGLRDSLKASLEAVVTDEADIYDAVKDYLVQYQPGDLRLLTWYEDRLLPLG 257 Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 IE ++ V L S GY++I TEALV IDVN+G+ + + +T + NLEA Sbjct: 258 KLYRIEKTMEEALGKRVWLKSGGYLVIEPTEALVVIDVNTGKYSGKKEHRETIKKVNLEA 317 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AEEI QLRLR+L+G+I++DFIDME +++ R + ++L+E + KD + V ++ L+E Sbjct: 318 AEEIGHQLRLRNLSGIIIIDFIDMEAEEDKRILMERLEEIVSKDPVKTTVVEMTKLNLVE 377 Query: 467 MSRQRIRSSVLE 478 ++R++IR + E Sbjct: 378 VTRKKIRKPLYE 389 Score = 69.2 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Query: 3 NKMLIDASHVEETRVVVLRDNR-VEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 NK++I + + +L+ R ++D E E+ + + GNIY+ KV + ++ AAFVD Sbjct: 2 NKLIITRWNGSV--ITLLQSGRETVQVDIEPENNRPVLGNIYIGKVNHIVKNINAAFVDI 59 Query: 62 GGNRHGFLPFLE--IH 75 G + G+L + IH Sbjct: 60 GKGQMGYLSLNDAWIH 75 >gi|213420401|ref|ZP_03353467.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 219 Score = 160 bits (403), Expect = 9e-37, Method: Composition-based stats. Identities = 68/189 (35%), Positives = 106/189 (56%) Query: 317 GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT 376 Y +F +P + Y PIF +E ++ + +V L S GY+II+QT Sbjct: 7 TYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQT 66 Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 EA+ ++D+N+G ++DT TN+EA + IARQLRLR+L G+I++DFIDM + + Sbjct: 67 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 126 Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 R V L+++L KDR + + S GL+EM+R+R R SV C C G G +++ Sbjct: 127 RRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTV 186 Query: 497 SSVALSILR 505 +V I+R Sbjct: 187 ETVCYEIMR 195 >gi|237740804|ref|ZP_04571285.1| ribonuclease G [Fusobacterium sp. 2_1_31] gi|229422821|gb|EEO37868.1| ribonuclease G [Fusobacterium sp. 2_1_31] Length = 459 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 115/466 (24%), Positives = 213/466 (45%), Gaps = 19/466 (4%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK-GGSPEDVP 161 ++ + + + D LEE+ +E D+++ E + E Sbjct: 7 LSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDIGLEKNA 66 Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 L+VQ+ E R KGA +T S+ G VL+PN SK +IS+ Sbjct: 67 FLSFENKKNIPKFNIFDSLIVQVETEARDGKGARLTLDYSINGENLVLLPN-SKNLSISK 125 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 KI N K LK + + G+ILRT ++ + +++ + +N + Sbjct: 126 KIENLETIKKLK----DIFLNIDKGLILRTKSVEKSPEALLEEYKK-LEAINNQIQKDFK 180 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 L+Y+ +++K+A+ L +DI E I+ E + + K+ ++ +Y + Sbjct: 181 EKNTTLLYDNNSILKKAL-TLLDEDIDEFIIDDEDSFNKIKNTLEENKRNYLLKKFKKYF 239 Query: 342 -PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL 400 IF ++ Q++ +V L S ++I +TEALVSIDVN+G++T ++ Sbjct: 240 KDEDIFSYYKLDTQIERALDRKVYLESGASIVIEKTEALVSIDVNTGQNTGNQSSQNLIF 299 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 TNLEA +EIARQ++LR+LAG+I++DFID+++ + + + ++LK LKKDR + S Sbjct: 300 NTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISDRKKILEELKRYLKKDRMEINSLDFS 359 Query: 461 NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 + GL++ +R+R + + C YC+G Y+ S+ + L++ + + + I+ Sbjct: 360 HLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLSKDRIILNLFAELNSQIKYNDLNKIV 419 Query: 521 VHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 + T D++ + I + + IE Sbjct: 420 IKTKKDIIKEIKKLIS----------NPKIEYEEDSNFYKEGYKIE 455 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ LI + + ET++ +L D+++EE+ E E +K+I GNIY K+ + + FVD Sbjct: 1 MSK-CLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVD 59 Query: 61 YGGNRHGFLPF 71 G ++ FL F Sbjct: 60 IGLEKNAFLSF 70 >gi|149072082|ref|YP_001293522.1| ribonuclease E [Rhodomonas salina] gi|134303033|gb|ABO70837.1| ribonuclease E [Rhodomonas salina] Length = 429 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 4/318 (1%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 I + I++VQ++KE G KG VT ++L GRY L+P SR + + Sbjct: 82 NITNHLSCNSIVMVQVLKEPNGQKGPTVTGDITLRGRYLTLLPFEED-IFFSRDFESNEN 140 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 L+ + L P G+++ + I +DF L+ WD++ AP L+ Sbjct: 141 IVYLR-LLFTLLKPKSTGILINKKAIHASINNIIQDFYSLLYEWDSICHNLNYQSAPFLI 199 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 N I + ++ +Y + + I+V ++G ++ + + + + FF Sbjct: 200 SRNKNFISKVLQKVYSEKVDTILVDSKQGSKKIASTVTRWIKQKNNTLSIKYFENHNFFV 259 Query: 349 SGIEVQL--DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + L L Q+ + L GY+II +TEAL +IDVNSG + +T L N +A Sbjct: 260 RDYNLDLIVYDLLQSRINLLGGGYIIIEKTEALTTIDVNSGSFNYLNNPRETILLVNRKA 319 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A++IAR LRLR+++G+I+VDFIDM+ +++ ++ LK+D R ++ S GL+E Sbjct: 320 AKQIARHLRLRNISGVIIVDFIDMKNQQDQLALLLHFDSFLKQDEQRPRIIQFSELGLVE 379 Query: 467 MSRQRIRSSVLESTTKVC 484 ++R+R S+LE + Sbjct: 380 LTRKRQGRSLLEMFSNSN 397 Score = 53.1 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV--DYGGNRHGFLPFL 72 D + +L E G+IY+ V V PS+ AAF+ DY +GF+ Sbjct: 20 DTVITQLIIERGT--YHIGDIYIGIVETVLPSINAAFIILDY-SENNGFIHIN 69 >gi|197301704|ref|ZP_03166774.1| hypothetical protein RUMLAC_00430 [Ruminococcus lactaris ATCC 29176] gi|197299144|gb|EDY33674.1| hypothetical protein RUMLAC_00430 [Ruminococcus lactaris ATCC 29176] Length = 321 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 4/306 (1%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 LLVQI +E K VT L+L GRY+VL ++ S+ D L+ A Sbjct: 18 GDELLVQISREAVKTKAPTVTGNLNLTGRYAVLTHGNTRIGVSSKIPKKERDAYKLRLQA 77 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 G+I+RT + ++ E L + ++ + A++ V + Sbjct: 78 ---YQNDRFGIIVRTNAKEAPFEAVVKEIEDLKKEYERLTSNAMSRVCFSCLKSAPPSYI 134 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFM-KLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 +++ Y + EIIV+ Y F + + I + +P+ + + Sbjct: 135 TDLKNAYMDGMQEIIVNDPDLYHTICSFFDREIPERSYLIRLYDDAGYPLGKLYSTQTAI 194 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++ + V L GY++I TEAL +DVNSG+S ++ AL+ NLEAA E ARQ+R Sbjct: 195 ENALKERVWLKHGGYLVIQVTEALTVVDVNSGKSIKKSKNTPDALKLNLEAARETARQIR 254 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+L+G+I+VDF++M++ + ++ ++ + L KD + + I+ GL E++R+++R Sbjct: 255 LRNLSGIILVDFVNMDDPEMEETLFQEFRFYLTKDPIQTTLVDITALGLAEVTRKKVRKP 314 Query: 476 VLESTT 481 + E T Sbjct: 315 LYEMIT 320 >gi|169344180|ref|ZP_02865162.1| ribonuclease, Rne/Rng family [Clostridium perfringens C str. JGS1495] gi|169297638|gb|EDS79738.1| ribonuclease, Rne/Rng family [Clostridium perfringens C str. JGS1495] Length = 480 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++V+++KE+ G+KGA VT+ +SLAGRY VL + +ISRKI N KE Sbjct: 77 KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L P+ +GV +RT S + EI+ + E L + + V S+ P + +G+L Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYKNYKEVIREGKFSLNPKKIMGKGDL 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I + IRD S IIV + Y KD + S V Y+D +F GIE + Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVTLYDDARSLFDYYGIEKE 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + SL V L G ++I +TEA+ IDVNSG++T E TA +TN AA EIARQ+ Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 ++R+L G+I+VDFIDM ++N + + K LK+ K D R ++ + GL++++R R Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ E + C C G G S + L + + + + + + +S + Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429 Query: 535 KRATIVEY 542 + E Sbjct: 430 IFEFLKEI 437 Score = 68.1 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV + +N + E E E + ++G IY V RV P +++AF+D G ++ Sbjct: 14 RVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65 Query: 76 PDYYQIPFSDRQALLKESNIAQTDSEA 102 Y I D + L + I + Sbjct: 66 ---YMILGEDEKDLKQGDGIIVEVLKE 89 >gi|225572159|ref|ZP_03781023.1| hypothetical protein RUMHYD_00453 [Blautia hydrogenotrophica DSM 10507] gi|225040331|gb|EEG50577.1| hypothetical protein RUMHYD_00453 [Blautia hydrogenotrophica DSM 10507] Length = 395 Score = 157 bits (396), Expect = 6e-36, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 153/308 (49%), Gaps = 4/308 (1%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +LVQ+ +E K +VTT L+ G Y VL ++ K S+ + + Sbjct: 84 PGDQVLVQVSREAMKGKAPSVTTRLNFTGTYLVLTTDSRKIAFSSKLDADSKE---RLGA 140 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 + G+I+RT T +I ++F L + V N L+ E Sbjct: 141 LLSPLLDGTFGMIVRTNAKEGTPEQILQEFRELKTRLERVLSQGKNRRCFSLLDEAEPFC 200 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP-SYARIVRQYEDPHPIFFRSGIEVQ 354 + + + Y + + EI+ + Y ++ + + + + + P++ +E Sbjct: 201 PKILHNTYTEGLEEIVTDDPQIYLNLQELLHMERTLDISLLRFYEDSLLPLYKLYRLETA 260 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L+ + +V L S GY++I QTEA VSIDVNSG+ + E+T + NLEAA +IARQL Sbjct: 261 LEEIASEKVWLKSGGYLVIQQTEAFVSIDVNSGKFAGKKKAEETYRKINLEAAAQIARQL 320 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR+L+G+I++DFI+M+ + + L++ L+KD + V ++ ++E++R+++R Sbjct: 321 RLRNLSGIILIDFINMDNSDHKEELLHVLQKYLRKDPVKGVVVDMTKLNIVEVTRKKVRR 380 Query: 475 SVLESTTK 482 + E ++ Sbjct: 381 PLFEDLSE 388 Score = 58.1 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 + ++ EL+F E KK I GNIY+ +V + ++QAAF+ ++G P Sbjct: 12 ALEEAGKILELNFVREQKKSILGNIYVGQVQNLVSNIQAAFIQI---QNGL-------PC 61 Query: 78 YYQIPFSDRQALLKESNIAQT 98 YY + D A+ + + Sbjct: 62 YYSLREQD-TAIYAQERTHEK 81 >gi|110803091|ref|YP_699407.1| ribonuclease [Clostridium perfringens SM101] gi|110683592|gb|ABG86962.1| ribonuclease, Rne/Rng family [Clostridium perfringens SM101] Length = 480 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++V+++KE+ G+KGA VT+ +SLAGRY VL + +ISRKI N KE Sbjct: 77 KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L P+ +GV +RT S + EI+ + E L + + V S+ P + +G+L Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYKNYKEVIREGKFSLNPKKIMGKGDL 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I + IRD S IIV + Y KD + S V Y+D +F GIE + Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVTLYDDARSLFDYYGIEKE 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + SL V L G ++I +TEA+ IDVNSG++T E TA +TN AA EIARQ+ Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 ++R+L G+I+VDFIDM ++N + + K LK+ K D R ++ + GL++++R R Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ E + C C G G S + L + + + + + + +S + Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429 Query: 535 KRATIVEY 542 + E Sbjct: 430 IFEFLKEI 437 Score = 68.1 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV + +N + E E E + ++G IY V RV P +++AF+D G ++ Sbjct: 14 RVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65 Query: 76 PDYYQIPFSDRQALLKESNIAQTDSEA 102 Y I D + L + I + Sbjct: 66 ---YMILGEDEKDLKQGDGIIVEVLKE 89 >gi|163814054|ref|ZP_02205446.1| hypothetical protein COPEUT_00207 [Coprococcus eutactus ATCC 27759] gi|158450503|gb|EDP27498.1| hypothetical protein COPEUT_00207 [Coprococcus eutactus ATCC 27759] Length = 387 Score = 157 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 141/310 (45%), Gaps = 3/310 (0%) Query: 171 QEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRK 230 ++ ++VQI ++ K ++ L++ G YSV+ IS KI++ R Sbjct: 80 HTKLRIGDDVVVQISRDAVKTKNPVGSSELTIRGEYSVVHT--GNQIGISGKISSRKLRD 137 Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 +LK+ +P MG I+RT A IK++ L + + + A ++ Sbjct: 138 DLKK-LAKETLPDNMGCIIRTNAAGAEHDVIKKELNDLAGRLEQILKAATTRKCFSCLFR 196 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 I + + I E + + ++ V D P+ Sbjct: 197 NPPEYIENITLIGSQKIDEFVTDDLDIFNVFNEYSGKKGLCDINAVLYSNDNCPLSAIYN 256 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 ++ +++ + V L S Y+II QTEA+V +DVN+G+S + L+ N EAA E Sbjct: 257 LKKEVEGALKERVWLKSGAYLIIQQTEAMVVVDVNTGKSVSGKDMSQHILKVNTEAAVET 316 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 RQLRLR+L+G+IV+DFI+M+ + + L + L D + I+ GL+E++R+ Sbjct: 317 CRQLRLRNLSGIIVIDFINMKNPDDIYKIRDVLIKELADDPVPAKYVDITKLGLIELTRK 376 Query: 471 RIRSSVLEST 480 +++ + E Sbjct: 377 KLKRPLHEML 386 Score = 55.0 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 13/148 (8%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 + D +V +L+ + GNIY+ KV + ++ A F+DYG + P Sbjct: 16 ATIHDGKVTDLNL--SENDTVLGNIYVGKVANIVDNINACFIDYG----------DKLPC 63 Query: 78 YYQIPFSDRQ-ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 YY + +D A KE + + V T S E T + Sbjct: 64 YYSLDDNDIIYADGKEHTKLRIGDDVVVQISRDAVKTKNPVGSSELTIRGEYSVVHTGNQ 123 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKF 164 IS +D+K + E +P Sbjct: 124 IGISGKISSRKLRDDLKKLAKETLPDNM 151 >gi|291563404|emb|CBL42220.1| Ribonucleases G and E [butyrate-producing bacterium SS3/4] Length = 430 Score = 157 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 96/413 (23%), Positives = 174/413 (42%), Gaps = 40/413 (9%) Query: 105 DDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 D + + + EE I + ++I +A + V P Sbjct: 20 KDGHAAQIDFEPEAAEEETGVIFVGKVKNISKNINAAFVEYRPGVNGFYSLKGNARPIYA 79 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + +K +LVQ+ + K A +T+ L+L G+ +VL S ++ Sbjct: 80 DGKTE-HGPLKAGDEILVQVERSAVKTKDAVLTSNLTLTGQTAVLSAGKSSLGISAKIRD 138 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + G+++RT G + ++ ++F L + + + A + Sbjct: 139 KEWRDAVKQRW--ETTEHGDCGLVVRTNGEAAGIDKVFKEFAALYERYLVICKAAASRTC 196 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD--------------------- 323 ++Y + RA+RDL D E++ + Y+E +D Sbjct: 197 YSVLYRPESFAVRAVRDLKICDGLEVVTDLPEVYKELQDALGITDSRAAENSGTAADSEA 256 Query: 324 ----------------FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 M M + +R Y D P+ +E L V L S Sbjct: 257 AESSAATADSTAVDSAKMACSMAAGMPSLRLYTDDFPLTALYHLETILSQALSKTVWLKS 316 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G ++I TEAL IDVN+ +S + ++T L+TNLEAA EIA QLRLR+L+G+I+VDF Sbjct: 317 GGNLVIEPTEALTVIDVNTAKSVSKKTSKETYLKTNLEAAGEIAVQLRLRNLSGIIIVDF 376 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 IDM+E+++ +++ L+ ++ D + + ++ GL+E++R++IR + E Sbjct: 377 IDMKEEESRKTLLAALRRAVIADPVKTVLVDMTPLGLVELTRKKIRRPLHEQV 429 >gi|18311113|ref|NP_563047.1| ribonuclease, Rne/Rng family [Clostridium perfringens str. 13] gi|18145796|dbj|BAB81837.1| ribonuclease G [Clostridium perfringens str. 13] Length = 480 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 188/368 (51%), Gaps = 7/368 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++V+++KE+ G+KGA VT+ +SLAGRY VL + +ISRKI N KE Sbjct: 77 KQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR-NDISISRKIENLE---FKKE 132 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + L P+ +GV +RT S + EI+ + E L R + V S+ P + +G+L Sbjct: 133 LENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYRNYKEVIREGKFSLNPKRLLGKGDL 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 I + IRD S IIV + Y KD + S V Y+D +F GIE + Sbjct: 193 INKIIRDDIDAYTSSIIVDSIEDYERIKDSISN---SEYLKVILYDDARSLFDYYGIEKE 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + SL V L G ++I +TEA+ IDVNSG++T E TA +TN AA EIARQ+ Sbjct: 250 ILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQI 309 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 ++R+L G+I+VDFIDM ++N + + K LK+ K D R ++ + GL++++R R Sbjct: 310 KIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDSQRAKIFPFTELGLVQITRYRKGK 369 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ 534 S+ E + C C G G S + L + + + + + + +S + Sbjct: 370 SIYEYIEENCLACNGHGKRLKLSYINLLLRNEILKKNGEGKIKDFHIEINSIYEKDIRGN 429 Query: 535 KRATIVEY 542 + E Sbjct: 430 IFEFLKEI 437 Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV + ++N + E E E + ++G IY V RV P +++AF+D G ++ Sbjct: 14 RVAIKKNNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQA-------- 65 Query: 76 PDYYQIPFSDRQALLKESNIAQTDSEA 102 Y I D + L + I + Sbjct: 66 ---YMILGEDEKDLKQGDGIIVEVLKE 89 >gi|254520217|ref|ZP_05132273.1| ribonuclease [Clostridium sp. 7_2_43FAA] gi|226913966|gb|EEH99167.1| ribonuclease [Clostridium sp. 7_2_43FAA] Length = 482 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 106/464 (22%), Positives = 193/464 (41%), Gaps = 11/464 (2%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162 D+ N+ E + + E N V + E Sbjct: 7 ERDEPLLRVAIKDNNVLSECFVEEHSSGPKMGEIYKGRVKNIVTAINSIFVDIGLEKEAY 66 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 + E IK +LV+++KE NKGA V+ +S+ GR+ VL S R Sbjct: 67 MYFSNEIKSEGIKKGDEILVEVIKEPINNKGAKVSKNISIPGRFMVLTLGGSGISFSKRI 126 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + L + G G+ +RT + ++ + L+ + + + S Sbjct: 127 SSTEEKERIL----NAINNIDGYGITIRTEAVHASDEDLLAEKISLLSELEVIIKKLRYS 182 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 + VY E ++ + IR+ + I+ E LL + + ++ + Sbjct: 183 LKLGKVYGENIILNKVIRENLGNECKIILNHEEDLNEVK----SLLEDNDKVNIEKFNNT 238 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 +F GIE ++ L +V L G ++I++TEA+ IDVNS ++ + + T L+T Sbjct: 239 RSLFDYYGIEKEILKLRHKKVALNCGGNIVIDKTEAMYVIDVNSSKNIKGRNFDKTILET 298 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 N+EAA+EI RQ+RLR+LAG+IV+DFIDM + V LKESLK+D+ +++ + Sbjct: 299 NIEAAKEIGRQIRLRNLAGIIVIDFIDMRDFSQKALVMDALKESLKEDKGNMKIFPFTEL 358 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 L++++R+R S+ E + C C GY+ S + I + + + + ++ + Sbjct: 359 DLVQIARKRRGKSIYEYLEEGCRRCNKEGYVLKLSYIEKLIRNEIIKCEEENSINSFYIE 418 Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 Y K + + + + + IE Sbjct: 419 LD---SNYEEMVKGDIFSFLRNINSLDKEIYLNFTNGIEGYKIE 459 Score = 64.6 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++ I+ RV + +N + E E G IY +V + ++ + FVD G Sbjct: 2 REIFIERDEPL-LRVAIKDNNVLSECFVEEHSSGPKMGEIYKGRVKNIVTAINSIFVDIG 60 Query: 63 GNRHGFLPF-LEIHPD 77 + ++ F EI + Sbjct: 61 LEKEAYMYFSNEIKSE 76 >gi|42773|emb|CAA38206.1| unnamed protein product [Escherichia coli K-12] Length = 341 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 124/331 (37%), Positives = 185/331 (55%), Gaps = 7/331 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 ++ ++ P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFSSKIKLNTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 R IE+TA TNLEAA+EIARQLRLRDL G Sbjct: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGG 341 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|160880695|ref|YP_001559663.1| ribonuclease [Clostridium phytofermentans ISDg] gi|160429361|gb|ABX42924.1| ribonuclease, Rne/Rng family [Clostridium phytofermentans ISDg] Length = 404 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 4/309 (1%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 L+VQ++KE+ K VTT ++ G+Y VLM T S+ ++ Sbjct: 90 GDELVVQVIKEDIKTKAPVVTTSIAFTGKYVVLMHGTKTIGISSKI--GSEQKRKRLRSL 147 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 + G +LRT I + E L + +D + + L+Y+ Sbjct: 148 VSPFLGEQYGFVLRTNAVEAEDNLIVEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFL 207 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPIFFRSGIEVQL 355 AIRD + KD+ II Y E K+++ ++ + + IE +L Sbjct: 208 CAIRDGFAKDLEAIITDDLSLYDEIKEYLTEHQREDIGKLTFYQDKLLALSKLYSIETKL 267 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQL 414 + +V LP G ++I TEAL IDVN+G++ ++ +++T L+ NLEAAEEIA Q+ Sbjct: 268 SRALREKVWLPCGGSLVIQPTEALTVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQI 327 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 LR+L+G+I+VDFIDM + + + E L+KD + + ++ L+E++R+++R Sbjct: 328 CLRNLSGIIIVDFIDMISEDAKTQLLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRK 387 Query: 475 SVLESTTKV 483 + E Sbjct: 388 PLHEQMKHT 396 Score = 61.9 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ K LI + + N++ +++ + E + GNIY+ KV + ++ AAFV+ Sbjct: 1 MSGK-LIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVE 59 Query: 61 YGGNRHGFLPFLE-IHPDYYQIPFSDRQALLKE 92 + +LP + ++P + SD+ + E Sbjct: 60 ISDRKMCYLPLADVVNPIFTHAKSSDKVNIGDE 92 >gi|118444771|ref|YP_878591.1| ribonuclease G [Clostridium novyi NT] gi|118135227|gb|ABK62271.1| ribonuclease G [Clostridium novyi NT] Length = 481 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 111/465 (23%), Positives = 207/465 (44%), Gaps = 9/465 (1%) Query: 103 VADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162 ++ V +D E E N V + + Sbjct: 7 EREEGILRIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYDKNAY 66 Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 + + +KN +LV+I+KE G KG VT+ +S+ GRY V++ + K + Sbjct: 67 MYLNHKFKNDDVKNGDEVLVEIMKESLGEKGPKVTSSISVPGRYVVIVTHNKKIGFSKKI 126 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 N + + + P +G+++RT T +I ++ E L + + + S Sbjct: 127 EDNDNFKSYI---IDNINKPDDIGIMIRTNALDATIEDINKELEKLYDNYKKIVQEGTYS 183 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 + P L+Y G + R + D+ + ++IV+ E K+F++ + Y Sbjct: 184 LKPKLLYNGGGTLGRILNDILTFNTKKVIVNNEDDAEYIKEFVEDKS-DLELEIEVYSGK 242 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 +F IE ++ SL ++ LPS G ++I++TEA+ IDVNSG++T++ I+ TAL T Sbjct: 243 QSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMYVIDVNSGKNTKQTSIDKTALVT 302 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAA+EIARQ+ +R+L+G+I++DFID+ + + + LKE K+D+ + + + Sbjct: 303 NLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIMHILKEEFKEDKKKTVIYPFTQL 362 Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 L++++R+R ++ E + C+ C G + I + + Y +I + Sbjct: 363 NLVQIARKRRGKAISEYIEEDCSMCHGKSKRIKLEYLNKLIKDEITKIDEGYNIKDIYIE 422 Query: 523 THSDVVLYLLNQKRATIVEYEARFG-VSINVVIGIELADKLFYIE 566 +L I E E + +N + + F +E Sbjct: 423 IDEIYKKDILGDIIKFIEEIEGMHKSIYVNFISN----LEYFKVE 463 Score = 63.5 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72 R+V+ D+ ++E E E + G IY V + P+++ AF+D G +++ ++ Sbjct: 14 RIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYDKNAYMYLN 70 >gi|313903958|ref|ZP_07837338.1| Ribonuclease E [Eubacterium cellulosolvens 6] gi|313471107|gb|EFR66429.1| Ribonuclease E [Eubacterium cellulosolvens 6] Length = 391 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 77/308 (25%), Positives = 148/308 (48%), Gaps = 4/308 (1%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 ++VQ+ KE K +TT ++LAGR+ V + + ++ + Sbjct: 83 HEGNSVIVQVEKEALKQKLPRLTTNINLAGRWLVFTSGRPTMNFSKKL---HEEDRSRLK 139 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 A GVI+RT A + E++ +++ L + + + +Y E Sbjct: 140 ALLKPMYDATFGVIIRTNAAQAGEKELEEEWKQLAGKMEYITTYGPSRTTGTCLYREDPE 199 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY-ARIVRQYEDPHPIFFRSGIEV 353 R IR ++ I+ + + E +DF+ + P + + +D +F + Sbjct: 200 WIRMIRQCSFLHLNRIVTDLPEIHAETQDFLHRVDPDHRVKCELYKDDMVELFRIYNLTT 259 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 L V L S G+++I QTEA +IDVN+GR + TN EAAEE ARQ Sbjct: 260 LFTELTSKRVWLKSGGFLVIEQTEAFCAIDVNTGRYSGNKDYRSMVRMTNAEAAEESARQ 319 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR L+G I++DFI+M++ ++ + + + +++ +K+D +V ++ ++E++R+++R Sbjct: 320 IRLRQLSGTILIDFINMKDPEDRKELIELMQDFVKRDVVSTKVVDLTALDIMEVTRRKVR 379 Query: 474 SSVLESTT 481 S+ E + Sbjct: 380 RSLAEQHS 387 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 10/100 (10%) Query: 1 MANKMLIDA--SHVEETRVVVL--RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56 M K++I A + +ET V + D + E ++ + GN+Y+ +V +++ SL A Sbjct: 1 MEQKIVIAAFPAEGKET-VATVLYEDGKPAEFCLTPAGQRPVLGNVYVGRVEKIQKSLSA 59 Query: 57 AFVDYGGNRHGFLP-----FLEIHPDYYQIPFSDRQALLK 91 AFV + + +GFLP +H I +++AL + Sbjct: 60 AFVRFHEDSNGFLPLTGEELSTLHEGNSVIVQVEKEALKQ 99 >gi|255284205|ref|ZP_05348760.1| cytoplasmic axial filament protein [Bryantella formatexigens DSM 14469] gi|255265230|gb|EET58435.1| cytoplasmic axial filament protein [Bryantella formatexigens DSM 14469] Length = 408 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 168/382 (43%), Gaps = 6/382 (1%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 D +++ + I + ++I +A ++ + S + P Sbjct: 21 DGRAAELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEIEDGISCYLPLSEKAEPYFTN 80 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + + V LLVQI +E K VT +S G+Y VL ++ ++ Sbjct: 81 KTNSPRLVA--GDELLVQIAREGVKTKAPTVTANISFPGKYLVLTSGKTQTGISAKLAKA 138 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + G G ILRT A + EI R+ E L + ++++ A Sbjct: 139 E---RERLQQIAGRLPEGNFGWILRTNAAEAEEEEILREAETLAKRFEDICRTARYRTCK 195 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHP 344 +Y ++D+ + EI+ + Y + ++ +P+ A ++ + P Sbjct: 196 SCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYDRLQAYLAENLPADAEKLSFYEDRLLP 255 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 ++ +E + + V L S Y++I TEAL +IDVN+G+ R +T + NL Sbjct: 256 LYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEALTAIDVNTGKCERGKKASETFRKINL 315 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA E ARQ+RLR+L+G+I++DFI+M+ K+ + + L L+KD + I+ GL Sbjct: 316 EAAREAARQIRLRNLSGIILIDFINMDSKEEEQRLLAALDAELQKDPVKAYAVDITPLGL 375 Query: 465 LEMSRQRIRSSVLESTTKVCTY 486 E++R+R++ + E + Sbjct: 376 AEVTRKRVQKPLAEKMRQSVPQ 397 Score = 65.0 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 13/67 (19%) Query: 1 MANKMLIDASHVEETRV------VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54 M NK++I TR+ + D R EL F+ E + + GNIY+ KV V ++ Sbjct: 1 MKNKLII-------TRLWDGIATALYLDGRAAELSFDRETETPLPGNIYIGKVKNVVKNI 53 Query: 55 QAAFVDY 61 QAAFV+ Sbjct: 54 QAAFVEI 60 >gi|331270037|ref|YP_004396529.1| ribonuclease G [Clostridium botulinum BKT015925] gi|329126587|gb|AEB76532.1| ribonuclease G [Clostridium botulinum BKT015925] Length = 484 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 113/475 (23%), Positives = 217/475 (45%), Gaps = 19/475 (4%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + +D + I + S I + +I A D+ N Sbjct: 10 EREEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFIDIGCNKNA- 68 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + +KN +LV+I+KE G KG VT+ +S+ GRY V++ N Sbjct: 69 ---------YMYLHHKFKNDDVKNGDEVLVEIMKEAIGEKGPKVTSSISVPGRYIVIVTN 119 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +K + N + +K+ E +G+++RT T +I + + L +++ Sbjct: 120 NNKISFSKKIEDNDNFKCYIKDNINKPE---DIGIMIRTNALDATIEDINTEIQKLYKIY 176 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 N+ + + P L+Y+ G + R + D+ + +++V+ ++ + F++ Sbjct: 177 KNIVQEGTYCLKPKLLYDCGGTLGRILNDILTFNTRKVVVNNKEDLIYIEKFIEDKS-DL 235 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ YE +F IE ++ SL +V LPS G +II++TEA+ +DVNSG++T+E Sbjct: 236 DLELQLYEGTQNLFSYHNIEREILSLRNNKVMLPSGGNIIIDKTEAMYVVDVNSGKNTKE 295 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 I+ TAL TNLEAA EIARQ+ +R+L+G+I++DFID+ + + + LK+ K+D+ Sbjct: 296 TSIDKTALVTNLEAAREIARQIMMRNLSGIIIIDFIDIHDYDYKKKILHILKDEFKEDKK 355 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + L++++R+R ++ E + C C G S + I +++ Sbjct: 356 KTVIYPFTQLNLVQIARKRRGKAISEYIEEECNMCHGKAKRIKLSYLNKLIKNELKKIDN 415 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV-SINVVIGIELADKLFYIE 566 Y +I + +L I + E +N + + F +E Sbjct: 416 DYNISDIYIELDEKYKKDVLGDVIKFIEDIEGLHKKIYVNFISN----LEYFKVE 466 Score = 65.0 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 66/460 (14%), Positives = 139/460 (30%), Gaps = 47/460 (10%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 + I+ E R+V+ D+ ++E E E + G IY V + P+++ AF+D G N Sbjct: 7 IYIER-EEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFIDIGCN 65 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 ++ ++ + DDV +GD + Sbjct: 66 KNAYMYLH---------------------------HKFKNDDVKNGDEVLVEIMKEAIGE 98 Query: 125 PIANFSQETEEES-----IISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQI 179 + + + N S + + + I +I+ + Sbjct: 99 KGPKVTSSISVPGRYIVIVTNNNKISFSKKIEDNDNFKCYIKDNINKPEDIGIMIRTNAL 158 Query: 180 LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN--TSKGETISRKITNPVDRKNLKEIAR 237 K + + G Y L P G T+ R + + + K + Sbjct: 159 DATIEDINTEIQKLYKIYKNIVQEGTYC-LKPKLLYDCGGTLGRILNDILTFNTRKVVVN 217 Query: 238 GLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKR 297 E + + ++++ + L + RE+ ++ GN+I Sbjct: 218 NKEDLIYIEKFIEDKSDLDLELQLYEGTQNLFSYHNIEREILSLRNNKVMLPSGGNIIID 277 Query: 298 AIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED-------PHPIFFRSG 350 +Y D++ + E + L + Sbjct: 278 KTEAMYVVDVNSGKNTKETSIDKTALVTNLEAAREIARQIMMRNLSGIIIIDFIDIHDYD 337 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 + ++ + + E + VI T+ + V R R I + + Sbjct: 338 YKKKILHILKDEFKEDKKKTVIYPFTQLNL---VQIARKRRGKAISEYIEE-ECNMCHGK 393 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 A++++L L LI + ++ N + +L E KKD Sbjct: 394 AKRIKLSYLNKLIKNELKKIDNDYNISDIYIELDEKYKKD 433 >gi|116872972|ref|YP_849753.1| ribonuclease [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741850|emb|CAK20974.1| ribonuclease, Rne/Rng family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 453 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 167/397 (42%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K ++ L G + + +IS++I + + Sbjct: 80 QGAKIPVQIVREGSATKLPLLSAVLEFPGDLLIYLHGKEY-VSISKRIADKEP----LKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 L + VI+R+ + + +++ + + + A P L L+ Sbjct: 135 IMELLLDENEAVIIRSNAENSSNEQLEIALNQAREKYQLLIKDAATRKKPGL------LL 188 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A S + + +F K L + + +F GI+ Q+ Sbjct: 189 SAASGVFTSAKQFIQRYSPTEIMTDDFEFAKTLEVHFPNREIVLKKSSDLFADIGIKSQI 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + L + V LP+ + I +TEA+ IDVNS R E T N++A EI R +R Sbjct: 249 ERLSRPVVHLPNGSSLFIEKTEAMWVIDVNSSRFKGTAAKEKTVESVNIKAVPEIFRHIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + + + ++ +++ Q+ A+S GLL+++R++ + S Sbjct: 309 LRNMSGMIIVDFIGGMSEAGHEELYEAIERQSREEYTTTQIAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533 LE TT C C G G++ S+ ++A + R + ++Q ++I + T DV LN Sbjct: 369 FLEFTTIPCPVCYGTGHVASKDTLAFQLEREL-AGIMQGEPNSIQIITTEDVLDAFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TFNHAPIDWE---------VADERI--PFYQIARVEN 453 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I+A+H+ E RV VL D+ + +++ +K G+I+ + +++ + AAFVD G Sbjct: 2 KKLIINAAHI-EKRVAVLEDDTLIDMEIIRPSEKVQVGDIFYGFIQKIDRKMDAAFVDLG 60 Query: 63 GNRHGFLPFLEI 74 GF+ +I Sbjct: 61 NQNKGFIHLKDI 72 >gi|325263967|ref|ZP_08130700.1| ribonucleases G and E [Clostridium sp. D5] gi|324031005|gb|EGB92287.1| ribonucleases G and E [Clostridium sp. D5] Length = 398 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 172/392 (43%), Gaps = 6/392 (1%) Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 ++ E H D + I + +I +A ++ S V Sbjct: 10 KEDEKAWIFLLEDDEIVEIHCDKADAAGAERHVLGNIYVGRVKNIVPNIGAAFIEIESGV 69 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 E S + I L+VQI KE K V++ LS GRY++L Sbjct: 70 ECYYDMSQAANALFTHKAGRKPLCI--GDELVVQISKEAVKTKAPTVSSNLSFTGRYAIL 127 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 ++ T + + LKE + G+I+RT +I + + L Sbjct: 128 TTGNTRIGTSGKLPKAQREE--LKERLLPYKNE-EYGLIIRTNAGDAEFDQILEEIKSLE 184 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + + +++ A + + ++++Y + ++EII+ E+ Y + +++ K Sbjct: 185 QNYSVLKKTAGTRTCFTCLQQAPPAYISDLKNVYTEGLTEIIIEDEELYGQVREYYKKEQ 244 Query: 330 P-SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P ++ ++ + L+ V L + Y++I TEAL IDVNSG+ Sbjct: 245 PFELDKLRLYHDGQLSLAKLYNTHTVLERALSERVWLKTGAYLVIQYTEALTVIDVNSGK 304 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 + +T L+ NLEAA E+A+Q+RLR+L+G+I+VDFI++++ R + K ++ L Sbjct: 305 CNAKKNPLETYLKINLEAAREVAKQMRLRNLSGIIIVDFINLDDADATRELLKTFRQHLS 364 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 KD + + ++ L+E++R+++R + ES Sbjct: 365 KDPIQATLVDVTELQLVELTRKKVRRPLYESI 396 Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Query: 19 VLRDNRVEELDFESEH----KKQIKGNIYLAKVTRVEPSLQAAFVDY 61 +L D+ + E+ + ++ + GNIY+ +V + P++ AAF++ Sbjct: 19 LLEDDEIVEIHCDKADAAGAERHVLGNIYVGRVKNIVPNIGAAFIEI 65 >gi|253681721|ref|ZP_04862518.1| ribonuclease G [Clostridium botulinum D str. 1873] gi|253561433|gb|EES90885.1| ribonuclease G [Clostridium botulinum D str. 1873] Length = 481 Score = 151 bits (380), Expect = 4e-34, Method: Composition-based stats. Identities = 117/475 (24%), Positives = 218/475 (45%), Gaps = 19/475 (4%) Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDV 152 + + +D + I + S I + +I A D+ N Sbjct: 7 EREEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFIDIGCNKNA- 65 Query: 153 KGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPN 212 + + +KN +LV+I+KE G KG VT+ +S+ GRY V++ N Sbjct: 66 ---------YMYLHHKFKNDDLKNGDEVLVEIMKEAIGEKGPKVTSSISVPGRYVVIVTN 116 Query: 213 TSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLW 272 +K + N + +K+ E +G+++RT T +I + E L + Sbjct: 117 NNKISFSKKIEDNDNFKCYIKDNVNKPE---DIGIMIRTNALDATIEDINTEIEKLYETY 173 Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 + + + P L+Y+ G + R + D+ + +++++ E+ + K F++ Sbjct: 174 KKIVQEGTYCLKPKLLYDGGGTLGRILNDILTFNTKKVVLNNEQDLKYIKKFIEDKS-DL 232 Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ YE +F IE ++ SL +V LPS G +II++TEA+ IDVNSG++T+E Sbjct: 233 DLELQLYEGTQNLFSYYNIEREILSLRNNKVMLPSGGNIIIDKTEAMYVIDVNSGKNTKE 292 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 I+ TAL TNLEAA EIARQ+ +R+L+G+I++DFID+ + + + LK+ K+D+ Sbjct: 293 TSIDKTALVTNLEAAREIARQIMMRNLSGIIIIDFIDIHDYDYKKKILHILKDEFKEDKK 352 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 + + + L++++R+R ++ E + CT C G S + I +++ Sbjct: 353 KTVIYPFTQLNLVQIARKRRGKAISEYIEEECTMCNGKAKRIKLSYINKLIRNELKKIDN 412 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-ARFGVSINVVIGIELADKLFYIE 566 Y +I + +L I + E R + +N + + F +E Sbjct: 413 DYNISDIYIELDEKYKKDVLGDVIKFIKDIEGLRKKIYVNFISN----LEYFKVE 463 Score = 63.8 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + I+ E R+V+ D+ ++E E E + G IY V + P+++ AF+D Sbjct: 1 MET-IYIER-EEEILRIVLREDDILKECFIEEEKSEPSPGKIYKGVVKNIVPAIKCAFID 58 Query: 61 YGGNRHGFLPFL 72 G N++ ++ Sbjct: 59 IGCNKNAYMYLH 70 >gi|311031488|ref|ZP_07709578.1| ribonuclease, Rne/Rng family [Bacillus sp. m3-13] Length = 223 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 102/159 (64%) Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 +E +L+ + V LPS GY+II TEA+ IDVN+G+ + +++T L+TNLEAA EI Sbjct: 1 MEQELEKALKRIVWLPSGGYIIIEHTEAMTVIDVNTGKYIGKTGLQETVLKTNLEAAGEI 60 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQLRLR++ G+I+VDFIDM V +K+K++ +KDR+ V+V + LL+++R+ Sbjct: 61 ARQLRLREIGGIIIVDFIDMASDGEREQVLRKVKDAARKDRSHVRVIGFTELNLLQLTRK 120 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEE 509 ++R + + + C+ C G G + S +V + R + E Sbjct: 121 KVREPLTKMLLQPCSPCDGKGVVFSLDTVTYQLERELLE 159 >gi|315303305|ref|ZP_07873938.1| ribonuclease [Listeria ivanovii FSL F6-596] gi|313628320|gb|EFR96820.1| ribonuclease [Listeria ivanovii FSL F6-596] Length = 454 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 167/399 (41%), Gaps = 26/399 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 L VQI++E K +T L+ G V + + +IS++I + LK+ Sbjct: 80 QGAKLPVQIIREGSVTKLPLLTAELTFPGDLLVYL-YGKEYISISKRIMDKE---PLKKT 135 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 L + VI+R++ TK +++ ++ V + P L+ Sbjct: 136 I-ELLLGKNEAVIIRSSAEKATKEQLETALNEAREEYEQVILKSNKRKKP-------GLL 187 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A ++ I ++ S +F I+ Q+ Sbjct: 188 LSAAYGVFASTKQFIQRYQPDEIITDDFDFARVLESNWSDQVTLTKSADLFADLSIKKQI 247 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ IDVNSGR E T N +A EI +Q+R Sbjct: 248 DRLSRPVVHLSNGSSLFIEKTEAMWVIDVNSGRYKGSTEKEKTVELINQKAVPEILKQIR 307 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + + L+ +++ Q+ A+S GLL+++R++ + S Sbjct: 308 LRNMSGMILVDFIGGMSESGYTELYEVLERQTREEYITTQIAALSQSGLLQLTRRKKQQS 367 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533 LE+TT C C G G++ S+ ++A + R + ++Q +I + T DV+ LN Sbjct: 368 FLEATTIPCPTCYGTGHVASKETLAYQLEREL-SGIMQGEPESIQIITTEDVLDTFLDLN 426 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 V++E V + + I + Sbjct: 427 TLNDAPVDWE---------VADERI--PFYQILRVEKQN 454 Score = 73.5 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I A+++ E R+ VL D ++ +++ K G+I+ + +++ + AAFVD G Sbjct: 2 KKVVISAAYI-EKRIAVLEDEQMIDMEVIRPSNKIQVGDIFYGFIQKIDRKINAAFVDLG 60 Query: 63 GNRHGFLPFLEIHPDYY 79 GF+ +I PD+Y Sbjct: 61 NQNKGFIHLKDI-PDFY 76 >gi|330952676|gb|EGH52936.1| ribonuclease E [Pseudomonas syringae Cit 7] Length = 332 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 142/325 (43%), Positives = 201/325 (61%), Gaps = 4/325 (1%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE---DVK 153 + A+ D D+ I + ++ A I E S+ +A D S +K Sbjct: 9 EELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLK 68 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNT 213 S E K + + I++V+ Q ++VQ+ KEERGNKGAA+TT++SLAGRY VLMPN Sbjct: 69 EISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNN 128 Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + ISR+I L+E GL PA MG+I+RTAG R+ E++ D +YL++LW Sbjct: 129 PRAGGISRRIEGEER-NELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWT 187 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 ++E +L+ AP L+Y+E N+I RAIRD +DI E+++ + EA F++ +MP YA Sbjct: 188 AIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYA 247 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ YED P+F R IE Q+++ Q V LPS G ++I+ TEALVSID+NS R+T+ Sbjct: 248 SKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGS 307 Query: 394 CIEDTALQTNLEAAEEIARQLRLRD 418 IE+TALQTNLEAAEEIARQLRLRD Sbjct: 308 DIEETALQTNLEAAEEIARQLRLRD 332 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 61/103 (59%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDV 107 RHGFLP EI +Y++ R + + Q V + Sbjct: 61 RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEE 103 >gi|259157208|gb|ACV96815.1| hypothetical protein [uncultured bacterium] Length = 223 Score = 150 bits (378), Expect = 8e-34, Method: Composition-based stats. Identities = 98/223 (43%), Positives = 147/223 (65%), Gaps = 1/223 (0%) Query: 232 LKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 LKE LE+P GMG+I+RTAG ++ ++ D + ++ W+ +++ A + AP L+++E Sbjct: 1 LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQE 60 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMPSYARIVRQYEDPHPIFFRSG 350 N+I RA RD +DI EI++ K A+ + L P ++ ++ Y P+F Sbjct: 61 SNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQ 120 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+TR IE+TA TNLEAA+EI Sbjct: 121 IESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEI 180 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 ARQLRLRDL GLIV+DFIDM ++ R+ E +L+E++++D AR Sbjct: 181 ARQLRLRDLGGLIVIDFIDMTPVRHPRAGENRLREAVRQDPAR 223 >gi|325661210|ref|ZP_08149837.1| hypothetical protein HMPREF0490_00570 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472717|gb|EGC75928.1| hypothetical protein HMPREF0490_00570 [Lachnospiraceae bacterium 4_1_37FAA] Length = 401 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 172/395 (43%), Gaps = 5/395 (1%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 ++ L+ Q + + ++ D V I + +I +A ++ Sbjct: 2 KRKLVITKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFIEI 61 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + VE P ++ I LLVQI KE K VT+ LS G+ Sbjct: 62 ANGVECYYSIPQNPSPHFTQKVGKKPLCI--GDELLVQIQKEAVKTKVPTVTSNLSFTGK 119 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VL K S+ +++ + A + G I+RT +K + Sbjct: 120 YVVLTSGIKKIGISSKITG---EKRTQIQEAVEVLQSERYGFIVRTNAKDIPADLVKEEL 176 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L + ++ E+A + + E IRD+Y + +++I+V + Sbjct: 177 GQLAESYMHLVEIAQSRKVFSCLLEAPFTYLSNIRDIYQEGLTDIVVEESLFEDVKQYLE 236 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 K ++V + P++ +E + V + S Y++I TEAL IDVN Sbjct: 237 KEQPEDLEKLVCYADRQLPLYKLYSLESVISRALSERVWMKSGAYLVIQPTEALTVIDVN 296 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 +G+ ++ ++ NLEAA+E A+Q+RLR+L+G+I++DFI+++ K+ + + + ++ Sbjct: 297 TGKCIAGKKDDEVYMKINLEAAKEAAKQIRLRNLSGIILIDFINLKSKECTKDLLEVFQK 356 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 L+KD + + ++ L+E++R+++R + E Sbjct: 357 ELRKDPVQTILVDMTGLQLVEVTRKKVRKPLREVV 391 Score = 73.1 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 16/86 (18%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK-QIKGNIYLAKVTRVEPSLQAAFV 59 M K++I E+ VL + V E+ + + GNIY+ KV + P++QAAF+ Sbjct: 1 MKRKLVI-TKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFI 59 Query: 60 DY--GGNRHGFLPFLEIHPDYYQIPF 83 + G YY IP Sbjct: 60 EIANGVE------------CYYSIPQ 73 >gi|218132496|ref|ZP_03461300.1| hypothetical protein BACPEC_00355 [Bacteroides pectinophilus ATCC 43243] gi|217992606|gb|EEC58608.1| hypothetical protein BACPEC_00355 [Bacteroides pectinophilus ATCC 43243] Length = 418 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 157/376 (41%), Gaps = 29/376 (7%) Query: 128 NFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKE 187 + I + K + CI ++LVQ+ +E Sbjct: 44 ENVVNNINAAFIEYARGKKGYYSLTDNEHHIFLNPKNNDRMCI------GDLVLVQVSRE 97 Query: 188 ERGNKGAAVTTYLSLAGRYSVLMPNT---SKGETISRKITNPVDRKNLKEIARGLEVP-- 242 K +T + + GRY L + + IS+KIT+ R LK I + Sbjct: 98 GVKTKEPTLTGRIGITGRYCALTLDCKSENSSVFISKKITDEDRRSYLKGIVKDAMNNAL 157 Query: 243 ----------------AGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH 286 +I+RT + + + ++ ++ + A+ Sbjct: 158 NAYTASSVNSIPTASDMHFNIIVRTNAEDAPEEPVTAEVSRIVTTMCDILKDAVTRKGLT 217 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA-RIVRQYEDPHPI 345 +Y ++++ ++ +II + Y + ++ P A ++ + P+ Sbjct: 218 RMYSPEESCLEDVQNMRATNLEKIITDIPEVYDSVRRYLGENEPGEAAKLEFYDDMQLPL 277 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED-TALQTNL 404 +E Q+ + V LPS GY++I TEAL IDVNSG+ T ++D T L+ N+ Sbjct: 278 NKLYSVESQISTALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTGNRKLKDNTYLKINM 337 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 EAA EI RQL LR+L+G+IVVDFI++ + + + L + LK D V ++ GL Sbjct: 338 EAAVEIGRQLMLRNLSGIIVVDFINLNTFEEKKELMSYLADILKADTVPTSVVDMTRLGL 397 Query: 465 LEMSRQRIRSSVLEST 480 +E++R++IR + E Sbjct: 398 VEITRKKIRKPLHEVI 413 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 34 HKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 + I GNIY+ +V V ++ AAF++Y + G+ + Sbjct: 30 EDESILGNIYVGRVENVVNNINAAFIEYARGKKGYYSLTD 69 >gi|331085033|ref|ZP_08334120.1| hypothetical protein HMPREF0987_00423 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408733|gb|EGG88198.1| hypothetical protein HMPREF0987_00423 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 401 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 171/395 (43%), Gaps = 5/395 (1%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 ++ L+ Q + + ++ D V I + +I +A ++ Sbjct: 2 KRKLVITKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFIEI 61 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + VE P ++ I LLVQI KE K VT+ LS G+ Sbjct: 62 ANGVECYYSIPQNPSPHFTQKVGKKPLCI--GDELLVQIQKEAVKTKVPTVTSNLSFTGK 119 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VL K S+ +++ + + G I+RT +K + Sbjct: 120 YVVLTSGIKKIGISSKITG---EKRAQIQETVEVLRSERYGFIVRTNAKDIPADLVKEEL 176 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L + ++ E+A + + E IRD+Y + +++I+V + Sbjct: 177 GQLAESYMHLVEIAQSRKVFSCLLEAPFTYLSNIRDIYQEGLTDIVVEESLFEDVKQYLA 236 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 K ++V + P++ +E + V + S Y++I TEAL IDVN Sbjct: 237 KEQPEDLEKLVCYADRQLPLYKLYSLESVISRALSERVWMKSGAYLVIQPTEALTVIDVN 296 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 +G+ ++ ++ NLEAA+E A+Q+RLR+L+G+I++DFI+++ K+ + + + ++ Sbjct: 297 TGKCIAGKKDDEVYMKINLEAAKEAAKQIRLRNLSGIILIDFINLKSKECTKDLLEVFQK 356 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 L+KD + + ++ L+E++R+++R + E Sbjct: 357 ELRKDPVQTILVDMTGLQLVEVTRKKVRKPLREVV 391 Score = 73.1 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 16/86 (18%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKK-QIKGNIYLAKVTRVEPSLQAAFV 59 M K++I E+ VL + V E+ + + GNIY+ KV + P++QAAF+ Sbjct: 1 MKRKLVI-TKIAEQVVTAVLENEEVVEIHVSDKDTEAYRVGNIYVGKVKNIVPNIQAAFI 59 Query: 60 DY--GGNRHGFLPFLEIHPDYYQIPF 83 + G YY IP Sbjct: 60 EIANGVE------------CYYSIPQ 73 >gi|3786341|gb|AAC70893.1| cytoplasmic axial filament protein [Aggregatibacter actinomycetemcomitans] Length = 243 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 7/243 (2%) Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 +P+ + Y P+F +E + + V L S GY+II QTEA+ +ID+N+ Sbjct: 1 EFIPNLTDKLILYAGNQPLFDVYSVETGIHNALDKRVNLKSGGYLIIEQTEAMTTIDINT 60 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL--K 444 G +E+T TN+EA + IA+QL+LR+L G+I++DFIDM+++++ V L Sbjct: 61 GAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQKEEHRTRVFGILAGS 120 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE-STTKVCTYCKGAGYIRSQSSVALSI 503 + + Q G + + LE C C+G G +++ +V I Sbjct: 121 PCRRPGENQCQWFHSVGAG---GNDPQTHPRNLERVLCGDCPACQGRGRVKTVETVCYEI 177 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELADKL 562 +R + + + +V+ V YL+N++ + E E G I V + + Sbjct: 178 MREIIRVHHVFASEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQVKTEVFYTQEQ 237 Query: 563 FYI 565 F + Sbjct: 238 FDV 240 >gi|160892676|ref|ZP_02073466.1| hypothetical protein CLOL250_00206 [Clostridium sp. L2-50] gi|156865717|gb|EDO59148.1| hypothetical protein CLOL250_00206 [Clostridium sp. L2-50] Length = 388 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 3/308 (0%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K +LVQ+ K+ K T+ + L ++ NTS IS KI R +L Sbjct: 84 KAGDEILVQVSKDAIKTKNPVATSEIELKTENLLV--NTSGRIGISGKIRKKETRDHL-H 140 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 +P G G ILRT I D L + + + A +Y+ Sbjct: 141 QLAKRVLPDGFGCILRTVCQELPDETILSDLSELSKQLKQIIQTAKTRTCYSCLYKNDAE 200 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + + EI+ + + E ++ + ++ + + + Sbjct: 201 YLDYFILKHNAGLQEIVTDQKLVFDEFAMYLSEKQITDVKLTMYNDKNCNLLTLYNLPRD 260 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L++L + V + S Y++I QTEA+V IDVN+G+S +H E+ L+ N EAA E+ RQL Sbjct: 261 LENLKKERVWMKSGAYLVIEQTEAMVVIDVNTGKSVDKHSFEEHLLRINSEAAVEVCRQL 320 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR+L+G+IVVDFI+M++ + ++ L++ L KD ++ L+E++R++IR Sbjct: 321 RLRNLSGIIVVDFINMKQPGSMDVIKDILEQELAKDSVPAAFVDVTKLSLVELTRKKIRK 380 Query: 475 SVLESTTK 482 S+ E TK Sbjct: 381 SLKEQLTK 388 Score = 57.3 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG----------NRHG 67 V D ++ +L ++ I NIY+ KV + ++ AAFVD G N+H Sbjct: 16 AVYSDGKLSDLML--FDRQSILSNIYVGKVENIVANIDAAFVDIGTGLPCYYSISDNKHI 73 Query: 68 FL 69 FL Sbjct: 74 FL 75 >gi|218677995|ref|ZP_03525892.1| ribonuclease, Rne/Rng family protein [Rhizobium etli CIAT 894] Length = 397 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 207/341 (60%), Positives = 244/341 (71%), Gaps = 1/341 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 E + + + + T + ++ S + + +++ E Sbjct: 58 AEGASSVDNEDDGSTGGTMAAMVETDEISEDIDTNKRRHDDDDDDDDHGEEEVIESVGAE 117 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 D P+ V +K ++QY IQEVIK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLM Sbjct: 118 DAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLM 177 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 PNT++G ISRKITNP DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMR Sbjct: 178 PNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMR 237 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMP 330 LW+NVR L L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE+GYREAKDFMK+LMP Sbjct: 238 LWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLMP 297 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 S+A++V+ Y D HPIF RSGIE QLD + Q VTL S GY+I+NQTEALVSIDVNS Sbjct: 298 SHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPHVTLRSGGYLIMNQTEALVSIDVNSRPLD 357 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDME 431 ALQTNLEAAEEIA R LAGLIV+DFIDME Sbjct: 358 ARALDRGHALQTNLEAAEEIAAASPAR-LAGLIVIDFIDME 397 >gi|307243123|ref|ZP_07525297.1| ribonuclease, Rne/Rng family [Peptostreptococcus stomatis DSM 17678] gi|306493483|gb|EFM65462.1| ribonuclease, Rne/Rng family [Peptostreptococcus stomatis DSM 17678] Length = 466 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 98/390 (25%), Positives = 175/390 (44%), Gaps = 16/390 (4%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 ILLVQ+ K +G+K ++T +S+ GRY V +P+ + ++ + +LK Sbjct: 78 GDILLVQVSKSGKGDKRVSLTREVSIQGRYMVYIPSNDRLSYSNKLSKDQ--VSDLKAKI 135 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 L++ A G+I+RT +K DF+ L + + E+ +S+ P LV + I+ Sbjct: 136 GKLDIGASTGLIVRTEAQFADLDGLKNDFDSLKEAYARLEEVFRSSLNPGLVKKAKGEIE 195 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ-----------YEDPHPI 345 I KD+ II + +D + R + + + Sbjct: 196 SFIAYNLDKDLEAIIYPEDMDDESDRDKSNHIDKFDIRALVKSLDRAYLEKLVRDKNPAT 255 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 F G+ +L+ + L + Y++I++TEA+ IDVNSGR +T L N+ Sbjct: 256 FSNYGVNARLNHYLSNRIRLRNGSYIVIDKTEAMTVIDVNSGRYIGSANYANTVLDVNMG 315 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 +EIA Q+ +RDL+G+I+VDFIDM+ +++ + K+K SL D +V + GLL Sbjct: 316 LVDEIAMQILMRDLSGIIIVDFIDMKSERDREDLIAKMKMSLGADGKNTKVHGFTRLGLL 375 Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHT 523 E+SR+R ES R V ++ + L++ +++ Sbjct: 376 EISRRR-SQDSFESYYYNQESRDYYSANRLVDMVEERVIGQIYHSLIKNGEDKKTLLIEM 434 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVV 553 D L+ K+ + E E ++G+ + Sbjct: 435 EVDKYKRLIANKKDVLKEIEDKYGLDMEFK 464 >gi|238916950|ref|YP_002930467.1| ribonuclease G [Eubacterium eligens ATCC 27750] gi|238872310|gb|ACR72020.1| ribonuclease G [Eubacterium eligens ATCC 27750] Length = 409 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 100/457 (21%), Positives = 180/457 (39%), Gaps = 80/457 (17%) Query: 28 LDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQ 87 + + GNIY+ +V V ++ AAF++ + YY I Sbjct: 26 HYLKPLDSGSVVGNIYVGRVENVVKNINAAFIEI----------EDKQKCYYSI------ 69 Query: 88 ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147 +++ +E + GD + + A S + E + ++ V Sbjct: 70 ---QDNKAPIFFNEKNNPAICQGDRILVKVTTEPLKTKPAKVSSKIELTGNYAVVSNDVK 126 Query: 148 NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYS 207 V K + + K++ + + A T Sbjct: 127 GVHISKKIKSNETISEIKKRV---------------ADILIQKQREAIEKTGYDYLS--- 168 Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267 G+ILR+ A +I +D + Sbjct: 169 ------------------------------------NFGIILRSGCADADTDDIIKDVKA 192 Query: 268 LMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKL 327 L + ++ A+ S LV+++ I L KD E+I Y E + ++ Sbjct: 193 LCNEYTDMLRKAVFSKFYTLVHKDRPEYIEEIVHLSGKDRVEVITDIPDIYNELETYLPR 252 Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 I ++ P++ IE ++D+ +V L S GY+II QTEAL IDVNSG Sbjct: 253 SS--NMSIRMYKDELWPLYKLYSIEKEIDTALSKKVWLKSGGYLIIEQTEALSVIDVNSG 310 Query: 388 RSTREHCIEDT----ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 ++ + + AL+TNLEAA+++ +Q+++R+L+G+I+VDFI+M ++N + + L Sbjct: 311 KNVTKAKSMEAIEASALKTNLEAADKLCQQIKVRNLSGIIIVDFINM-NQRNCDILMEHL 369 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 K KKD + I+ GL+E++R++I S+ ES Sbjct: 370 KFLAKKDIVNTTIVDITKLGLVEITRKKIGKSLSESL 406 >gi|229824795|ref|ZP_04450864.1| hypothetical protein GCWU000182_00144 [Abiotrophia defectiva ATCC 49176] gi|229791124|gb|EEP27238.1| hypothetical protein GCWU000182_00144 [Abiotrophia defectiva ATCC 49176] Length = 406 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 155/390 (39%), Gaps = 16/390 (4%) Query: 101 EAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDV 160 A+ DD + I E I + E + + N V ++ P Sbjct: 15 SALTDDFDIKEFKISESTDGEVSFNIGDIVVGRVENIVKNINACFVEIFPGIQAYLP--- 71 Query: 161 PKKFKRQYCIQEVIKNRQI------LLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTS 214 I K +LVQI K K ++TT + G+Y+VL PN Sbjct: 72 --LTPDMKIIYVNGKPGGTPVIDDLILVQIAKLPTKTKSYSLTTDFTFIGKYAVLKPNLD 129 Query: 215 KGETISRKITNPVDRKNLKEIA---RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 K S+ + G G ++R + + + E++ L Sbjct: 130 KIHLSSKYREEADFTEIKSRFMSVGEKFATETGAGGVIRKSALNLSDKELEDTLYDLYVK 189 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPS 331 + ++ + V +++E IRD K + E + + Sbjct: 190 FVSIINRGKHGVKYERIFKEIPEHLSLIRDNCEKIEKIMTDDEETYNEYKEYLKEFSEKD 249 Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 ++ ++ + I L+ V L S Y++I TEAL IDVNSG++ Sbjct: 250 IKKLFFYKDEMMSLSALYSINTTLEKALSKRVWLKSGAYIVIEYTEALTIIDVNSGKAIT 309 Query: 392 EHCIE-DTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD 450 +T ++ NLEAA EIA QLRLR+L+G+I+VDFI++ + + + + +++ LK+D Sbjct: 310 GKSTNTETFMKINLEAAREIADQLRLRNLSGIIIVDFIEIPKSRG-KELINAMEDFLKED 368 Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLEST 480 + V I+ GL+E++R+R + E Sbjct: 369 STKSNVADITKLGLMELTRRRTGKPIYEIL 398 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 18 VVLRDNRVEELDF-ESEHKK--QIKGNIYLAKVTRVEPSLQAAFVDY 61 + D ++E ES + G+I + +V + ++ A FV+ Sbjct: 16 ALTDDFDIKEFKISESTDGEVSFNIGDIVVGRVENIVKNINACFVEI 62 >gi|289612665|emb|CBI60059.1| unnamed protein product [Sordaria macrospora] Length = 175 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 102/195 (52%), Positives = 133/195 (68%), Gaps = 20/195 (10%) Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 M+LLMP++AR V+QY D P+F R+ +E QL +++ V L S GY++IN TEALVSID+ Sbjct: 1 MRLLMPAHARRVKQYADAVPLFQRAHVEDQLAAMYNPVVQLKSGGYLVINPTEALVSIDI 60 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 NSGRSTREH IE TA TNLEAA+EIARQLRLRD+AGL+V+DFIDM+ N Sbjct: 61 NSGRSTREHNIEQTATATNLEAAQEIARQLRLRDMAGLVVIDFIDMDHGSN--------- 111 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 VG IS FGL+EMSRQR+R+ VLE++T+ C +C+G G +R+ SS LS L Sbjct: 112 -----------VGRISAFGLMEMSRQRLRTGVLEASTRQCPHCEGTGLVRTASSAGLSAL 160 Query: 505 RSVEEYLLQYTAHNI 519 R +E+ + I Sbjct: 161 RLIEDEAARGRGSLI 175 >gi|225025975|ref|ZP_03715167.1| hypothetical protein EUBHAL_00212 [Eubacterium hallii DSM 3353] gi|224956761|gb|EEG37970.1| hypothetical protein EUBHAL_00212 [Eubacterium hallii DSM 3353] Length = 403 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 140/306 (45%), Gaps = 3/306 (0%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 I+LVQI K+ K T +SL G+Y V + + + E Sbjct: 91 GGDIILVQITKDAVKTKLPVGTGNISLDGKYFVFTLTDKRTGISKKIRNTVERER--LET 148 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 G+I+RT A ++ + ++ E L ++ + A + L+Y E Sbjct: 149 LLKKYTREEYGIIVRTNAAGVSEETLTKELELLQLRYEELMRKAKIATGKTLLYREPPHY 208 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 ++L K + EI+ + + E K++ K S + YED + ++ Sbjct: 209 ITLGKELPAKALDEILTDHAEVFTELKEYYKQTSESDTTKISFYEDTYSLYNLYRFAHYY 268 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDT-ALQTNLEAAEEIARQL 414 + + + L S ++I TEA+ IDVN+G ++ EDT Q N EAA+EIARQL Sbjct: 269 EEAYGKYIWLKSGASLVIEHTEAMTVIDVNTGSVLKKKKQEDTLFYQINREAAKEIARQL 328 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR+++G+I++DFI+M++ + L KKDR V ++ L+EM+R ++R Sbjct: 329 RLRNISGIIMIDFINMKDTAQKEKLLSLLDSECKKDRVHCNVIDMTALNLVEMTRSKVRK 388 Query: 475 SVLEST 480 + E Sbjct: 389 PLHEQI 394 Score = 51.1 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 42/375 (11%), Positives = 104/375 (27%), Gaps = 21/375 (5%) Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQI 81 D EL E + ++ I GNIY A+V RV + AF++ G + YY + Sbjct: 24 DGVPTELYCEPKEQQSILGNIYAARVERVAEGIHGAFLEIG----------DNQKCYYSL 73 Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 L + + +T V ++ + T + Sbjct: 74 SAEQPVKLSPGHEDKLYGGDIILVQITKDAVKTKLPVGTGNISLDGKYFVFTLTDKRTGI 133 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + + + VE + + + + ++ + E + + Sbjct: 134 SKKIRNTVERERLETLLKKYTREEYGIIVRTNAAGVSEETLTKELELLQLRYEELMRKAK 193 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI------ARGLEVPAGMGVILRTAGAS 255 +A ++L T+ +++ + L + + + + Sbjct: 194 IATGKTLLYREPPHYITLGKELPAKALDEILTDHAEVFTELKEYYKQTSESDTTKISFYE 253 Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 T + ++ + + + E I + + Sbjct: 254 DTYS--LYNLYRFAHYYEEAYGKYIWLKSGASLVIEHTEAMTVIDVNTGSVLKKKKQEDT 311 Query: 316 KGYREAKDFMKLLMP--SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVII 373 Y+ ++ K + I + + +L SL +E R + + Sbjct: 312 LFYQINREAAKEIARQLRLRNISGIIMIDFINMKDTAQKEKLLSLLDSECK-KDRVHCNV 370 Query: 374 NQTEALVSIDVNSGR 388 AL +++ + Sbjct: 371 IDMTALNLVEMTRSK 385 >gi|254992667|ref|ZP_05274857.1| hypothetical ribonuclease G [Listeria monocytogenes FSL J2-064] Length = 453 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 97/491 (19%), Positives = 189/491 (38%), Gaps = 49/491 (9%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A +++ + + ++ V GD+ ++ A + I Sbjct: 10 PIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVDLGNNNKGFIHL 69 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + S + + VQIV+E K +T L Sbjct: 70 KDIPESYDKT------------------------QGAKIPVQIVREGSATKLPLLTGILE 105 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 +G V + R K + V VI+R+ TK ++ Sbjct: 106 FSGDLLVYLYGKEYISISKRIGD-----KIRLKKITETMVEENEAVIIRSNAEFATKEQL 160 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++ + + A P L+ + I + + + +++ + + + Sbjct: 161 QQALVQARDKHQTLLKEASKRKKPGLLLSVASGILNSTKQFIQRYAPSEVITDDFEFAKM 220 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + + + + +F GI+ Q+D L + V L + + I +TEA+ Sbjct: 221 LEML------WPDKQIIIKKSADLFADLGIKAQIDRLARPVVHLSNGSSLFIEKTEAMWV 274 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSG+ E T NL+A EI RQ+RLR+++G+I+VDFI + ++ + Sbjct: 275 VDVNSGKFKGTTAKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIGGMSELGYTALYE 334 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +++ QV A+S GLL+++R++ + S LE+TT C C G++ S+ ++A Sbjct: 335 ALEIKTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVCYATGHVASKETLAF 394 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LNQKRATIVEYEARFGVSINVVIGIELA 559 + R + ++Q NI + T DV+ LN +++E V + Sbjct: 395 ELEREL-SGIMQNEPSNIQIITTEDVLDTFLDLNTLSNAPIDWE---------VADERV- 443 Query: 560 DKLFYIEKGSP 570 + I + Sbjct: 444 -PFYQIGRVEN 453 Score = 73.9 bits (179), Expect = 8e-11, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M L+ ++ E R+ + D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86 >gi|260588584|ref|ZP_05854497.1| ribonucleases G and E [Blautia hansenii DSM 20583] gi|331082062|ref|ZP_08331190.1| hypothetical protein HMPREF0992_00114 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541059|gb|EEX21628.1| ribonucleases G and E [Blautia hansenii DSM 20583] gi|330405657|gb|EGG85187.1| hypothetical protein HMPREF0992_00114 [Lachnospiraceae bacterium 6_1_63FAA] Length = 400 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 185/392 (47%), Gaps = 4/392 (1%) Query: 88 ALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147 L+ + VA G + N SL + + N + + + Sbjct: 6 KLILTEMNYRNTPILVAALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQAAFIE 65 Query: 148 NVEDVKGGSPEDVP-KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 + V+K ++VQ+ KE +K V++ L+ GRY Sbjct: 66 IENGIMCYYSMAEKASPCFVNVKKNNVLKIGDEMIVQVSKEGIKSKLPYVSSNLNFTGRY 125 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 VL + + ++K ++EI + ++P +G+I+RT + EI + E Sbjct: 126 LVLTSERKELGFSGKLKK--EEKKQIREILKD-KIPENVGIIVRTNCRDAQEEEILHELE 182 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 LM+ ++ V + + V ++ + + +++LY +D+ EI+ ++ Y A ++K Sbjct: 183 ELMKRYEAVLQKGKSRVCFSVLEKSMPEYVQILQNLYSQDLEEIVTDKQELYECAVQYLK 242 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNS 386 + + P++ ++ + V L S G+++I QTEA V IDVN+ Sbjct: 243 GYKQQEKIVRYYEDKLLPLYKLYNLQKAFEQAQNERVWLKSGGFLVIQQTEAFVCIDVNT 302 Query: 387 GRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKES 446 G+ T + +++T + NLEAA+EIA QLRLR+L+G+I++DFI++E ++ + + L++ Sbjct: 303 GKCTSKKDMQETFRKINLEAAKEIAWQLRLRNLSGIILIDFINLERAEDKEELMQTLQKY 362 Query: 447 LKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L +D + V ++ ++E++R+++R S+ E Sbjct: 363 LWQDSIKGTVVDMTELNIVEVTRKKVRKSLAE 394 Score = 51.5 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 28/44 (63%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 + ++ R+ +L+ S + I GNIY+ KV ++ ++QAAF++ Sbjct: 23 ALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQAAFIEI 66 >gi|46907771|ref|YP_014160.1| ribonuclease [Listeria monocytogenes serotype 4b str. F2365] gi|226224144|ref|YP_002758251.1| hypothetical ribonuclease G [Listeria monocytogenes Clip81459] gi|254824398|ref|ZP_05229399.1| ribonuclease [Listeria monocytogenes FSL J1-194] gi|254852167|ref|ZP_05241515.1| ribonuclease [Listeria monocytogenes FSL R2-503] gi|254931478|ref|ZP_05264837.1| ribonuclease [Listeria monocytogenes HPB2262] gi|255521598|ref|ZP_05388835.1| hypothetical ribonuclease G [Listeria monocytogenes FSL J1-175] gi|300764790|ref|ZP_07074780.1| rne/Rng family ribonuclease [Listeria monocytogenes FSL N1-017] gi|46881040|gb|AAT04337.1| ribonuclease, Rne/Rng family [Listeria monocytogenes serotype 4b str. F2365] gi|225876606|emb|CAS05315.1| Putative hypothetical ribonuclease G [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605471|gb|EEW18079.1| ribonuclease [Listeria monocytogenes FSL R2-503] gi|293583030|gb|EFF95062.1| ribonuclease [Listeria monocytogenes HPB2262] gi|293593633|gb|EFG01394.1| ribonuclease [Listeria monocytogenes FSL J1-194] gi|300514466|gb|EFK41523.1| rne/Rng family ribonuclease [Listeria monocytogenes FSL N1-017] gi|332311985|gb|EGJ25080.1| Ribonuclease, Rne/Rng family [Listeria monocytogenes str. Scott A] Length = 453 Score = 147 bits (370), Expect = 6e-33, Method: Composition-based stats. Identities = 96/491 (19%), Positives = 189/491 (38%), Gaps = 49/491 (9%) Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 P R A +++ + + ++ V GD+ ++ A + I Sbjct: 10 PIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVDLGNNNKGFIHL 69 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 + S + + VQIV+E K +T L Sbjct: 70 KDIPESYDKT------------------------QGAKIPVQIVREGSATKLPLLTGILE 105 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 +G + + R K + V VI+R+ TK ++ Sbjct: 106 FSGDLLIYLYGKEYISISKRIGD-----KIRLKKITETMVEENEAVIIRSNAEFATKEQL 160 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 ++ + + A P L+ + I + + + +++ + + + Sbjct: 161 QQALVQARDKHQTLLKEASKRKKPGLLLSVASGILNSTKQFIQRYAPSEVITDDFEFAKM 220 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + + + + +F GI+ Q+D L + V L + + I +TEA+ Sbjct: 221 LEML------WPDKQIIIKKSADLFADLGIKAQIDRLARPVVHLSNGSSLFIEKTEAMWV 274 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +DVNSG+ E T NL+A EI RQ+RLR+++G+I+VDFI + ++ + Sbjct: 275 VDVNSGKFKGTTAKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIGGMSELGYTALYE 334 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+ +++ QV A+S GLL+++R++ + S LE+TT C C G++ S+ ++A Sbjct: 335 ALEIKTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVCYATGHVASKETLAF 394 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LNQKRATIVEYEARFGVSINVVIGIELA 559 + R + ++Q NI + T DV+ LN +++E V + Sbjct: 395 ELEREL-SGIMQNEPSNIQIITTEDVLDTFLDLNTLSNAPIDWE---------VADERV- 443 Query: 560 DKLFYIEKGSP 570 + I + Sbjct: 444 -PFYQIGRVEN 453 Score = 73.9 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M L+ ++ E R+ + D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86 >gi|291166408|gb|EFE28454.1| ribonuclease, Rne/Rng family [Filifactor alocis ATCC 35896] Length = 450 Score = 147 bits (370), Expect = 6e-33, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 180/393 (45%), Gaps = 18/393 (4%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 + + +KN +++ QI KE +K A +T ++L+G Y + +P K +S KI N Sbjct: 69 QVNKDLKNGDVVIAQIKKEPISSKLAKLTDDINLSGEYVIYLP-YGKEIFLSNKIKNDTR 127 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 L + +G+I+RT +++ + E L+ L++ + + V L Sbjct: 128 SDKLVKKLS--TDFLNIGLIVRTEAIEVDYEQVRDEVERLVDLFNEIMKKKKEGVIGLLY 185 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 ++ + D + + I +E +K S +F Sbjct: 186 EQDS------LSDFFHHFRFDTIDEIISNSQEIISKVKDWARSKKMRPEYIFQEIDLFGS 239 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 GI L L + + +II TEA ++DVNSG R ++D AL+ NL++ + Sbjct: 240 CGIS--LTKLFSKKYEFGNI-SIIIEPTEAFTAVDVNSGYQERHCYMDDMALEVNLKSCK 296 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 + + ++++G+I++DFIDM++ + ++L+E ++D +V V I++ G++++ Sbjct: 297 YVVDLIIKKNISGIILIDFIDMKKHGYQEKLLRRLREEFRRDIKKVSVLNITSLGIVQVI 356 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSD 526 RQR + ++++ + C C G+GY++S + + + +YL NI+V Sbjct: 357 RQREKENIMDMISFSCPLCSGSGYLKSPLILLDELEVELRKYLYHRELKKGNILVLAPGY 416 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 + Y + E+++GVS+N+ + Sbjct: 417 MKSYFDKNQS----FLESKYGVSMNIKYEDYMN 445 >gi|315282461|ref|ZP_07870871.1| ribonuclease [Listeria marthii FSL S4-120] gi|313613900|gb|EFR87634.1| ribonuclease [Listeria marthii FSL S4-120] Length = 453 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 171/397 (43%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K ++ L G + + R D+ LK+ Sbjct: 80 QGAKIPVQIVREGSATKLPLLSGVLEFPGDLLIYLYGKEYISVSKRI----ADKDTLKKT 135 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 L +I+R+ + T+ ++++ + + A P L+ + I Sbjct: 136 MTALITE-NEALIIRSNAENATEEQLQQALIQAREKHQALLKEATKRKKPGLLLSAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + I++ + +F K L ++ + + +F GI+ Q+ Sbjct: 195 FTSAKQFIQRHKPTEIITDD------FEFAKTLEDAWPDQLITLKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSGR E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLTNGSSLFIEKTEAMWVVDVNSGRFKGTTAKEKTVESVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + + ++ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEAIESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533 LE TT C C G++ S+ ++A + R + ++Q ++I + T DV+ LN Sbjct: 369 FLEVTTAPCPVCYATGHVASKETLAFELEREL-AGIMQNEPNSIQIITTEDVLDTFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 IFNNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 82.3 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 8/87 (9%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I A+ E R V+ ++ + +++ +K G+I+ + +++ ++AAFVD G Sbjct: 2 KKLVISAA-PIEKRAAVVENDLLIDIEIVRPSEKVQVGDIFYGFIQKIDRKMEAAFVDLG 60 Query: 63 GNRHGFLPFLEIHPDYY------QIPF 83 N GF+ +I PD Y +IP Sbjct: 61 NNNKGFIHLKDI-PDSYDKTQGAKIPV 86 >gi|217964310|ref|YP_002349988.1| ribonuclease, Rne/Rng family [Listeria monocytogenes HCC23] gi|217333580|gb|ACK39374.1| ribonuclease, Rne/Rng family [Listeria monocytogenes HCC23] gi|307571124|emb|CAR84303.1| ribonuclease, Rne/Rng family [Listeria monocytogenes L99] Length = 453 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L + + + R + K + Sbjct: 80 QGAKIPVQIVREGSATKLPLLTAVLEFSSDLLIYLYGKEYISVSKRIVE-----KITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + A P L+ + I Sbjct: 135 IMETLVEENEALIIRSNAEFATKEQLQQALVQARDKHQALLKEASKRKKPGLLLAAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + +F K+L ++ + +F GI+ Q+ Sbjct: 195 LT------NTKQFVERYKPSEIITDDFEFAKMLETTWPDQQITLKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVELVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533 LE TT C C G++ S+ ++A + R + ++Q ++I + T DV LN Sbjct: 369 FLEMTTIPCPICYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLDAFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 78.9 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M L+ ++ E R V+ D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LVVSAAPIEKRAAVMEDDLLIDVEIVRPSEKVQVGDIYYGFIQKIDRKMEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPASYDKTQGAKIPV 86 >gi|224499797|ref|ZP_03668146.1| hypothetical protein LmonF1_08969 [Listeria monocytogenes Finland 1988] Length = 453 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L +G + + R + K + Sbjct: 80 QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + + A P L+ + I Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQTRDKYQTLVKEASKRKKPGLLLSAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + + +F K+L Y + +F GI+ Q+ Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533 LE+TT C C G++ S+ ++A + R + ++Q ++I + T DV+ LN Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M LI ++ E RVV + D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86 >gi|16803583|ref|NP_465068.1| hypothetical protein lmo1543 [Listeria monocytogenes EGD-e] gi|224501517|ref|ZP_03669824.1| hypothetical protein LmonFR_03202 [Listeria monocytogenes FSL R2-561] gi|255028683|ref|ZP_05300634.1| hypothetical protein LmonL_04956 [Listeria monocytogenes LO28] gi|284801933|ref|YP_003413798.1| hypothetical protein LM5578_1688 [Listeria monocytogenes 08-5578] gi|284995075|ref|YP_003416843.1| hypothetical protein LM5923_1640 [Listeria monocytogenes 08-5923] gi|16410972|emb|CAC99621.1| lmo1543 [Listeria monocytogenes EGD-e] gi|284057495|gb|ADB68436.1| hypothetical protein LM5578_1688 [Listeria monocytogenes 08-5578] gi|284060542|gb|ADB71481.1| hypothetical protein LM5923_1640 [Listeria monocytogenes 08-5923] Length = 453 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L +G + + R + K + Sbjct: 80 QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + + A P L+ + I Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + + +F K+L Y + +F GI+ Q+ Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533 LE+TT C C G++ S+ ++A + R + ++Q ++I + T DV+ LN Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M LI ++ E RVV + D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86 >gi|290893944|ref|ZP_06556920.1| ribonuclease [Listeria monocytogenes FSL J2-071] gi|290556482|gb|EFD90020.1| ribonuclease [Listeria monocytogenes FSL J2-071] Length = 453 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L + + + R + K + Sbjct: 80 QGAKIPVQIVREGSATKLPLLTAVLEFSSDLLIYLYGKEYISVSKRIVE-----KITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + A P L+ + I Sbjct: 135 IMETLVEENEALIIRSNAEFATKEQLQQALVQARDKHQALLKEASKRKKPGLLLAAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + +F K+L ++ + +F GI+ Q+ Sbjct: 195 LT------NTKQFVERYKPSEIITDDFEFAKMLETTWPDQQITLKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVELVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533 LE TT C C G++ S+ ++A + R + ++Q ++I + T DV LN Sbjct: 369 FLEMTTIPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLDAFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M L+ ++ E R V+ D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LVVSAAPIEKRAAVMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKMEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPASYDKTQGAKIPV 86 >gi|317500379|ref|ZP_07958603.1| hypothetical protein HMPREF1026_00546 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089614|ref|ZP_08338513.1| hypothetical protein HMPREF1025_02096 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898134|gb|EFV20181.1| hypothetical protein HMPREF1026_00546 [Lachnospiraceae bacterium 8_1_57FAA] gi|330404982|gb|EGG84520.1| hypothetical protein HMPREF1025_02096 [Lachnospiraceae bacterium 3_1_46FAA] Length = 404 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 176/391 (45%), Gaps = 6/391 (1%) Query: 89 LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148 + K N +T D V ++ I + ++I +A ++ Sbjct: 7 IEKSKNKIRTYLIEDDDIVEIHTSINEEQVPPGKLGDIYIGKVQNIVQNIGAAFIEITKG 66 Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 V + + I L+VQI +E K VT++LS GRY+V Sbjct: 67 VNCYFDLKDAENAYFTHKSGKKPLCI--GDELVVQISREAVKTKAPTVTSHLSFTGRYAV 124 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 L ++ S+ P ++ + G+I+RT E++ + E L Sbjct: 125 LTHGNTRIGVSSKI---PRALRDEFKDRLSRMKNEQFGIIIRTNAKGVPFQEVEDEIERL 181 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + + AL+ VA + ++++Y + + EI++ G+ Y E +++ Sbjct: 182 KEEYKKLLNTALSRVAFSRLKSAPPTYISDLKNVYMEGMEEIVIEGKDLYTEIQEYFLTE 241 Query: 329 MPSYARIVR-QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 P +++R P+ E L+ + V L + GY+II TEAL IDVNSG Sbjct: 242 FPEKVKLLRLYENPDFPLCKLYSTETALEKALKEFVWLKNGGYLIIQPTEALTVIDVNSG 301 Query: 388 RSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 + + A++ N+EAA+E A+Q+RLR+L+G+I+VDF+++E K++ + K+ + L Sbjct: 302 KMAVKSKNSAGAMKVNMEAAQEAAKQIRLRNLSGIIIVDFVNLESKEDTGILLKEFRNFL 361 Query: 448 KKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 KD + ++ GL+E++R+++R + E Sbjct: 362 SKDPIPTTLVDMTMLGLVEITRKKVRKPLYE 392 Score = 55.0 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 6/65 (9%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQI----KGNIYLAKVTRVEPSLQA 56 M K+LI+ S + R ++ D+ + E+ S +++Q+ G+IY+ KV + ++ A Sbjct: 1 MKRKILIEKSK-NKIRTYLIEDDDIVEIHT-SINEEQVPPGKLGDIYIGKVQNIVQNIGA 58 Query: 57 AFVDY 61 AF++ Sbjct: 59 AFIEI 63 >gi|313608642|gb|EFR84493.1| ribonuclease [Listeria monocytogenes FSL F2-208] Length = 453 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L + + + R + K + Sbjct: 80 QGAKIPVQIVREGSATKLPLLTAVLEFSSDLLIYLYGKEYISVSKRIVE-----KITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + A P L+ + I Sbjct: 135 IMETLVEENEALIIRSNAEFATKEQLQQALIQARDKHQALLKEASKRKKPGLLLAAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + +F K+L ++ + +F I+ Q+ Sbjct: 195 LT------NTKQFVERYKPSEIITDDFEFAKMLETTWPDQQITLKKSADLFADLRIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVELVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYEALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533 LE TT C C G++ S+ ++A + R + ++Q ++I + T DV LN Sbjct: 369 FLEMTTIPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLDAFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 78.5 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M L+ ++ E R V+ D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LVVSAAPIEKRAAVMEDDLLIDVEIVRPSEKVQVGDIYYGFIQKIDRKMEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPASYDKTQGAKIPV 86 >gi|254829698|ref|ZP_05234353.1| hypothetical protein Lmon1_00015 [Listeria monocytogenes 10403S] Length = 453 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 88/397 (22%), Positives = 165/397 (41%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L +G + + R K + Sbjct: 80 QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRISD-----KITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + + A L+ + I Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKSGLLLSAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + + +F K+L Y + +F GI+ Q+ Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533 LE+TT C C G++ S+ ++A + R + ++Q ++I + T DV+ LN Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 76.2 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M LI ++ E RVV + D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDQKVEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86 >gi|313618779|gb|EFR90678.1| ribonuclease [Listeria innocua FSL S4-378] Length = 453 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 176/396 (44%), Gaps = 23/396 (5%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K ++ L G + + +IS++I + K + E Sbjct: 80 QGAKIPVQIVREGSATKLPLLSAVLEFPGDLLIYLHGKEY-ISISKRIQDKEPLKIIMES 138 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 +I+R++ + TK +++ + + + A P L+ + + Sbjct: 139 LLE----ENEAIIIRSSAETATKEQLELALNQAREKYQTLVKEAETRKKPGLLLSAASGV 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + I++ + +F K++ ++ + +F GI+ Q+ Sbjct: 195 FLSTKQFIQRYMPIEIITDD------FEFAKIVEANFTDKEVSLKKSADLFADLGIKQQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNS R E T N++A EI RQ+R Sbjct: 249 DRLSRPVVHLSNGSSLFIEKTEAMWVVDVNSSRFKGTSAKEKTVEAVNIKAVPEIFRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI ++ + + +++ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEEGQGELREAIEKESREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL-LNQ 534 LE TT C C G G++ S+ ++A + R + ++ + ++ T + +L LN Sbjct: 369 FLEVTTIPCPVCYGTGHVASKDTLAFQLERELSGIMMGDPSSIQVITTEDVLDAFLDLNT 428 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 429 FNNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I+A+++ E RV VL D+ + +++ K G+I+ + +++ + AAFVD G Sbjct: 2 KKLVINAANI-EKRVAVLEDDVLIDVEIIRPSNKIQVGDIFYGFIQKIDRKMDAAFVDLG 60 Query: 63 GNRHGFLPFLEIHPDY-----YQIPF 83 GF+ +I Y +IP Sbjct: 61 NQNKGFIHLKDIPASYEKTQGAKIPV 86 >gi|330722481|gb|EGH00312.1| Ribonuclease E [gamma proteobacterium IMCC2047] Length = 650 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 117/330 (35%), Gaps = 41/330 (12%) Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489 M +N R VE ++K++LK DRAR+QVG IS FGLLEMSRQR+R S+ E++T VC C G Sbjct: 1 MSSNRNQREVENRIKDALKLDRARIQVGRISRFGLLEMSRQRLRPSLGETSTIVCPRCSG 60 Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 G IRS S++LS++R +EE + I V +LLN+KR + E E R V Sbjct: 61 HGTIRSIESLSLSVMRLIEEESSKDRTAQIHAFLPVVVATFLLNEKREKVAEIEKREDVR 120 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNT---------------------GHKVGSDSQAP 588 I ++ + F +++ +++T K + Sbjct: 121 IVIIPNPNMETPHFDVQRIREDNEIIHTTDASYGLIESDDDASALIPDVSSKKKEAAVKS 180 Query: 589 SYDKNIECVWQDEALLPIPKS--------------------ESLEDIQDNIVSEESTGVI 628 D P S E + + V E Sbjct: 181 VMPSTAAPAHTDTPAEAKPTSTSQSDEKPGFLKRIIGGLFGEPTQPVPSKPVEPEQAEKT 240 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R +R D D + + D + + + + Sbjct: 241 EPKAPRSEQRPQRNDRRDQSKGDHDEQPRERRGRGSRNRSQDRDRGRNQDNKRQENKDQQ 300 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + + +++R Sbjct: 301 KPQQADKNTKREAAANEQGNDKKPQRRSRQ 330 >gi|254898291|ref|ZP_05258215.1| hypothetical protein LmonJ_00710 [Listeria monocytogenes J0161] gi|254912217|ref|ZP_05262229.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936545|ref|ZP_05268242.1| ribonuclease [Listeria monocytogenes F6900] gi|258609139|gb|EEW21747.1| ribonuclease [Listeria monocytogenes F6900] gi|293590190|gb|EFF98524.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 453 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L +G + + R + K + Sbjct: 80 QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + + A P L+ + I Sbjct: 135 IMETMVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + + +F K+L Y + +F GI+ Q+ Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGISEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533 LE+TT C C G++ S+ ++A + R + ++Q ++I + T DV+ LN Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M LI ++ E RVV + D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86 >gi|313623650|gb|EFR93807.1| ribonuclease [Listeria innocua FSL J1-023] Length = 453 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 85/397 (21%), Positives = 175/397 (44%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K ++ L G + + +IS++I + K + E Sbjct: 80 QGAKIPVQIVREGSSTKLPLLSAVLEFPGDLLIYLHGKEY-ISISKRIQDKEPLKIIMES 138 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 +++R++ + TK +++ + + + + A P L+ + + Sbjct: 139 LLE----ENEAIVIRSSAETATKGQLELALNHAREKYQTLIKEAETRKKPGLLLSAASGV 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + I++ + +F K++ ++ + +F GI+ Q+ Sbjct: 195 FLSTKQFIQRYMPTEIITDD------FEFAKIVEANFTDKEVSLKKSADLFADLGIKQQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNS R E T N++A EI RQ+R Sbjct: 249 DRLSRPVVHLSNGSSLFIEKTEAMWVVDVNSSRFKGTSAKEKTVEAVNIKAVPEIFRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI ++ + + +++ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEEGQGELREAIEKESREEYVTTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLLN 533 LE TT C C G G++ S+ ++A + R + ++ +I V DV LN Sbjct: 369 FLEVTTIPCPVCYGTGHVASKDTLAFQLEREL-SGIMMGDPSSIQVIATEDVLDAFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TFNNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I+A+H+ E RV VL D+ + +++ K G+I+ + +++ + AAFVD G Sbjct: 2 KKLVINAAHI-EKRVAVLEDDVLIDVEIIRPSNKIQVGDIFYGFIQKIDRKMDAAFVDLG 60 Query: 63 GNRHGFLPFLEI 74 GF+ +I Sbjct: 61 NQNKGFIHLKDI 72 >gi|299822796|ref|ZP_07054682.1| ribonuclease G [Listeria grayi DSM 20601] gi|299816325|gb|EFI83563.1| ribonuclease G [Listeria grayi DSM 20601] Length = 446 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 163/395 (41%), Gaps = 31/395 (7%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 L VQI +E K T + A VL+ + ++S+++T+ +K Sbjct: 83 QGAKLPVQITREGTAIKLPLATGNIEFANDLVVLIEG-AHYLSVSKRLTSEQRSSWVK-- 139 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + A ILR+ A ++ E+ L + + ++E + LV + Sbjct: 140 AVEPILEADEAAILRSKAAEKSIEEVTSAIFELRQRFQTLKEKIGSRKKAGLVQKNVLDF 199 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 I + ++ R + F ++ + Sbjct: 200 TEVISQWQQHYPD----------------VMRVVTDDKRASIYTDYQEDTFHSYHLQPAI 243 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++L Q EV L + + I +TEA+ IDVN+ R + NL AAEEI RQ+R Sbjct: 244 ENLLQPEVILANGVSLFIEKTEAMWIIDVNTHRYKSNQAKSEVMATVNLAAAEEIVRQIR 303 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++GLIV+DF+ + + V+ K++ K+ QV S GL++++R++ + S Sbjct: 304 LRNMSGLIVIDFVGGMNETGFQKVKDKMEVLANKEYVTTQVADFSKTGLMQLTRRKKQQS 363 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 +LE+ T C C G+G+I+S S+A + R + Y + ++ + T + +L Q Sbjct: 364 LLETVTVACPVCNGSGHIQSALSLAYQLERELMSY--KGLSYASVYVTEPVLSAFLDLQV 421 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 I + E G A + I + Sbjct: 422 CEHI-DLEWEIGEE---------AVPFYAIRRTES 446 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 1 MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M K +I ++ E + +L R+ E + G+IY A V +++ + AAF+ Sbjct: 1 MTRMKEIIISNKNTEGHLALLESGRLLEYRLVRPSEDVSVGDIYYAAVEKIDKKINAAFL 60 Query: 60 DYGGNRHGFLPFLE 73 + GG+ F+ + Sbjct: 61 NLGGSEKAFIHMKD 74 >gi|228967525|ref|ZP_04128552.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str. T04001] gi|228792180|gb|EEM39755.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str. T04001] Length = 299 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 150/315 (47%), Gaps = 16/315 (5%) Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 + L +L++ ++ AP L++ + R ++ + I +++V +E + Sbjct: 1 MQMLQQLYEELKRKEGQGKAPLLLHRPATFLDRVFQENPIETIEKVVVDTRSIVKELEGK 60 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 + S+ Y + +F GIE +++ Q V LP+ Y+I+ Q E + IDV Sbjct: 61 IGKEKVSF------YNEKSSMFNHFGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDV 114 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 N+G+ T + ++DT L+TN AAEEIARQLRLRD+ G+I++DFI+M+ +++ V + L Sbjct: 115 NTGKFTGKQNLQDTVLRTNEVAAEEIARQLRLRDIGGMILIDFINMKRREDKEMVRECLM 174 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 +++ DR +V + G+LEM+R+R + S+ + + C CK GY+ S ++A + Sbjct: 175 AAMQNDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECVPCKATGYMMSYETIAYELE 234 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R + Y +++ D+ L E + I + + Sbjct: 235 RELITYGNIED-EAVLIAAPKDLQKQFLQ------KELQKNIPFEIYFKDD---MIEKYA 284 Query: 565 IEKGSPVQALVNTGH 579 I + +V Sbjct: 285 IVRFGSKTEIVERKK 299 >gi|210612762|ref|ZP_03289477.1| hypothetical protein CLONEX_01679 [Clostridium nexile DSM 1787] gi|210151455|gb|EEA82463.1| hypothetical protein CLONEX_01679 [Clostridium nexile DSM 1787] Length = 394 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 172/392 (43%), Gaps = 10/392 (2%) Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 ++ + ++ + + + T + + V Sbjct: 11 KEQVLTSLLENGEIVEFHCSPNETKEQAVLGNIYVGKVKNIVPNIGAAFVEVAKGVECYY 70 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 + +P K K+ CI LLVQ+ KE K V+ LS G+Y+VL Sbjct: 71 ALDENETPIFTQKIGKKPLCI------GDELLVQVSKEAVKTKVPTVSGKLSFTGKYAVL 124 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 ++ S+ P + + + G I+RT + +K + E L+ Sbjct: 125 TTGDTRIGISSKL---PKESREHFQKLAASYQSDAYGFIIRTNAKDVAEEVLKAELEQLI 181 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + + + ++A V + + ++++Y + EI++ Y E ++K+ Sbjct: 182 QEYKELVKIAGTRVCYSCLKKAPKQYLSELKNIYQDGLKEIVIEDPILYEETIAYLKMYQ 241 Query: 330 P-SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 P ++ R + P+ IE +L+ + V L S Y++I TEAL IDVN+G+ Sbjct: 242 PEDLGKVHRYEDTLLPLDKLHNIERKLEDALKERVWLKSGAYLVIQPTEALTVIDVNTGK 301 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 + E T L+ N+EAA+E+A+Q+RLR+L+G+I+VDFI++ K+ + ++ L+ Sbjct: 302 CISKKRDERTYLKINIEAAKEVAKQIRLRNLSGIILVDFINLSGKELMAELVDVFQKELR 361 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 KD + I+ L+E++R+++R + E+ Sbjct: 362 KDPISTTLVDITKLQLVEVTRKKVRKPLKEAI 393 Score = 64.6 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIK--GNIYLAKVTRVEPSLQAAF 58 M K++I E+ +L + + E K+ GNIY+ KV + P++ AAF Sbjct: 1 MERKLII-TRWKEQVLTSLLENGEIVEFHCSPNETKEQAVLGNIYVGKVKNIVPNIGAAF 59 Query: 59 VDY 61 V+ Sbjct: 60 VEV 62 >gi|195941165|ref|ZP_03086547.1| ribonuclease E [Escherichia coli O157:H7 str. EC4024] Length = 337 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 114/326 (34%), Positives = 174/326 (53%), Gaps = 7/326 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE LE+P GMG+I+RTAG ++ ++ D + ++ Sbjct: 132 NNPRAGGISRRIEGDDRTE-LKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-LLMP 330 W+ +++ A + AP L+++E N+I RA RD +DI EI++ K A+ + L P Sbjct: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 Query: 331 SYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST 390 + ++ Y P+F IE Q++S Q EV LPS G ++I+ TEAL +ID+NS R+T Sbjct: 251 DFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARAT 310 Query: 391 REHCIEDTALQTNLEAAEEIARQLRL 416 R IE+TA TNLEAA+E Sbjct: 311 RGGDIEETAFNTNLEAADESPASSAC 336 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 >gi|213582025|ref|ZP_03363851.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 82 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|313637703|gb|EFS03077.1| ribonuclease [Listeria seeligeri FSL S4-171] Length = 450 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 179/458 (39%), Gaps = 35/458 (7%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN----- 176 E + + E I + + + + V +R+ I Sbjct: 19 ENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLGNQRKGFIHLKDIPDIYEK 78 Query: 177 --RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 L VQ+V+E K +T L +G V + R + + ++ Sbjct: 79 TQGAKLPVQVVREGSATKLPLLTAVLEFSGDLLVYLHGKEYISISKRIMDKDSLKTTMEA 138 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + VI+R+ + T+ +++ + + + L+ + + Sbjct: 139 LLLE-----DEAVIIRSDAENATEEQLENALNEARERYQQLVRKSKKRKKAGLLMDSDSG 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + + + + I++ + + ++ D + IF I+ Q Sbjct: 194 VFFSAKQFIQRYQPIEILTDDFDFAKSIDVDGE---------VIIKKSADIFADLKIQPQ 244 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++ L + V L + + I +TEA+ IDVNSG E T N +A EI RQ+ Sbjct: 245 MERLARPVVHLTNGSSLFIEKTEAMWVIDVNSGGYKGSTEKEKTVALINQKAVSEILRQI 304 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR+++G+I+VDFI ++ + + +++ +++ Q+ A+S GLL+++R++ + Sbjct: 305 RLRNMSGMILVDFIGGMSEEGYTELYETIEKQTREEYTTTQIAALSQSGLLQLTRRKKQR 364 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLL 532 S LE TT C C G G++ S+ ++A + R + ++Q +I + T DV L Sbjct: 365 SFLEVTTIPCPVCYGTGHVASKDTLAYQLERELT-GIMQGEPDSIQIITTEDVLDAFLDL 423 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 N +++E V + + I + Sbjct: 424 NILNEAPIDWE---------VADERV--PFYQILRVEN 450 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I A+H+ E R+ VL ++ + +++ +K G+I+ + +++ + AAFVD G Sbjct: 2 KKVVISAAHI-EKRIAVLENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLG 60 Query: 63 GNRHGFLPFLEIHPDYY 79 R GF+ +I PD Y Sbjct: 61 NQRKGFIHLKDI-PDIY 76 >gi|121590781|ref|ZP_01678110.1| ribonuclease, Rne/Rng family [Vibrio cholerae 2740-80] gi|121547383|gb|EAX57497.1| ribonuclease, Rne/Rng family [Vibrio cholerae 2740-80] Length = 176 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 87/170 (51%) Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQ 455 E+T TN+EA + IARQLRLR+L G+I++DFIDM ++ + V L+ +L KDR + Sbjct: 4 EETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTN 63 Query: 456 VGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYT 515 + + GL+EM+R+R R S+ C C+G G +++ +V ILR + Y Sbjct: 64 INGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVCFEILREITRVNRAYD 123 Query: 516 AHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 A +V+ V L ++ + E E G + + + F + Sbjct: 124 ADKFVVYASPAVADTLQGEESHALAELEVFIGKEVRIQAEPLYNQEQFDV 173 >gi|254828223|ref|ZP_05232910.1| ribonuclease [Listeria monocytogenes FSL N3-165] gi|258600611|gb|EEW13936.1| ribonuclease [Listeria monocytogenes FSL N3-165] Length = 453 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 25/397 (6%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K +T L +G + + R + K + Sbjct: 80 QGAKIPVQIVREGSVTKLPLLTGILEFSGDLLIYLYGKEYISVSKRI-----EDKITLKK 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V +I+R+ TK ++++ + + + A P L+ + I Sbjct: 135 IMETIVEENEAIIIRSNAKFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGI 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + + +F K+L Y + +F GI+ Q+ Sbjct: 195 LNSTKQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+R Sbjct: 249 DRLARPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI + + L+ +++ QV A+S GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LN 533 LE+TT C C G++ S+ ++A + R + ++Q ++I + T DV+ LN Sbjct: 369 FLETTTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLN 427 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 428 TLSNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M LI ++ E RVV + D+ + +++ +K G+IY + +++ ++AAFVD Sbjct: 1 MKK--LIVSAAPIEKRVVAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVD 58 Query: 61 YGGNRHGFLPFLEIHPDY-----YQIPF 83 G N GF+ +I Y +IP Sbjct: 59 LGNNNKGFIHLKDIPESYDKTQGAKIPV 86 >gi|291524789|emb|CBK90376.1| Ribonucleases G and E [Eubacterium rectale DSM 17629] Length = 402 Score = 144 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 149/330 (45%), Gaps = 7/330 (2%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + + + +E + +LVQ++K+ K VTT LS+ G +L ++ Sbjct: 74 NDAKNPVYTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIFGSNVILTNFDTQI 133 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPA---GMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S+ + L++ G G+I+RT + + +D + + ++ Sbjct: 134 GVSSKL--DKERAALLRKAVLLSCADHEKEGYGIIVRTNAKNVEDKAVSQDAYSVAQKYN 191 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + + A + VY + ++ + + I + Y + + Sbjct: 192 QIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLLTEYGIYDHAPE 251 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 +I+R + + GI +D+L V L G +II Q E L IDVNS ++ Sbjct: 252 KIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSG 311 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 L+TN+EAA+EIARQLRLR+++G+I++DFI+M+ + + ++ + LK +K D Sbjct: 312 SNS--ILKTNMEAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEALKRYIKDDNTV 369 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 I+ GL+E++R+++ S+ + K Sbjct: 370 CTFVDITKLGLVELTRKKVHKSLKQILEKT 399 Score = 55.4 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 15 TRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 T ++ + ++ K I NIY A+V ++ P + AAFV N+ +L + Sbjct: 17 TVYALMDENGNYKDFQL-LPEKDTIINNIYAARVNKILPGINAAFVTIAQNKSCYLSLND 75 Query: 74 IHPDYYQIPFSDRQALLKESNI 95 Y S ++ L + I Sbjct: 76 AKNPVYTNKKSKKEGLCEGDEI 97 >gi|289829153|ref|ZP_06546808.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 102 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|313633130|gb|EFS00023.1| ribonuclease [Listeria seeligeri FSL N1-067] Length = 450 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 86/458 (18%), Positives = 178/458 (38%), Gaps = 35/458 (7%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN----- 176 E + + E I + + + + V +R+ I Sbjct: 19 ENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLGNQRKGFIHLKDIPDIYEK 78 Query: 177 --RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 L VQ+V+E K +T L +G V + R + + ++ Sbjct: 79 TQGAKLPVQVVREGSATKLPLLTAVLEFSGDLLVYLHGKEYISISKRIMDKDSLKTTMEA 138 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + VI+R+ + T+ +++ + + + L+ + + Sbjct: 139 LLLE-----DEAVIIRSDAENATEEQLENALNEARERYQQLVRKSKKRKKAGLLMDSDSG 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + + + + +++ + + ++ D + IF I+ Q Sbjct: 194 VFFSAKQFIQRYQPIEVMTDDFDFAKSIDVDGE---------VIIKKSADIFADLKIQPQ 244 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++ L + V L + + I +TEA+ IDVNSG E T N +A EI RQ+ Sbjct: 245 MERLARPVVHLTNGSSLFIEKTEAMWVIDVNSGGYKGSTEKEKTVALINQKAVSEILRQI 304 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR+++G+I+VDFI ++ + + ++ +++ Q+ A+S GLL+++R++ + Sbjct: 305 RLRNMSGMILVDFIGGMSEEGYTELYETIERQTREEYTTTQIAALSQSGLLQLTRRKKQR 364 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLL 532 S LE TT C C G G++ S+ ++A + R + ++Q +I + T DV L Sbjct: 365 SFLEVTTIPCPVCYGTGHVASKDTLAYQLERELT-GIMQGEPDSIQIITTEDVLDAFLDL 423 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 N +++E V + + I + Sbjct: 424 NILNEAPIDWE---------VADERV--PFYQILRVEN 450 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I A+H+ E R+ VL ++ + +++ +K G+I+ + +++ + AAFVD G Sbjct: 2 KKVVISAAHI-EKRIAVLENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLG 60 Query: 63 GNRHGFLPFLEIHPDYY 79 R GF+ +I PD Y Sbjct: 61 NQRKGFIHLKDI-PDIY 76 >gi|291550342|emb|CBL26604.1| Ribonucleases G and E [Ruminococcus torques L2-14] Length = 405 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 181/396 (45%), Gaps = 4/396 (1%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 ++ +L E + + +D +D + + + + + Sbjct: 9 KRKVLIEKKENHVWTFFLEEDQIAEIHCAKSDEQEKVHQIGDIYVAKVQNIVQNIGAAFL 68 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 D F ++ + L+VQI +E K VT +SL GR Sbjct: 69 EIEPGVNCYFDLRDAQNAFFTHKIGKKPLCIGDELVVQISREAVKTKVPTVTGNISLTGR 128 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y+VL ++ S+ + DR+ KE + + G+I+RT ++ + Sbjct: 129 YAVLTHGNTRIGVSSKI--SKKDREAYKERLQEYQNDQ-YGLIIRTNAKDAAFEDVLTEI 185 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 E L ++++ + A + V + ++++Y + EI+V+ + Y + + Sbjct: 186 EQLKAEYEHLLKYAASRVCFSCLKSAPPSYITDLKNVYMDGMEEILVNDAEMYEKICSYF 245 Query: 326 KLLMPSYARIVRQYEDPHPIFFR-SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 K MP +V ++D + E ++ V L GY++I TEAL IDV Sbjct: 246 KKEMPENLELVHFHDDSGYPLGKIYSTETAVEHALAERVWLKHGGYLVIQVTEALTVIDV 305 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 NSG++ R+ +++ L+ NLEAA+E ARQ+RLR+L+G+I++DFI+ +E+KN ++ K+ + Sbjct: 306 NSGKNVRKKGDDESTLKMNLEAAKETARQIRLRNLSGIILIDFINQDEEKNEETLLKEFR 365 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 L KD + + I+ GL E++R+++R + E+ Sbjct: 366 YFLAKDPIQTTLVDITALGLAEVTRKKVRKPLHEAV 401 Score = 41.9 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%) Query: 20 LRDNRVEELDF----ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 L ++++ E+ E E QI G+IY+AKV + ++ AAF++ Sbjct: 26 LEEDQIAEIHCAKSDEQEKVHQI-GDIYVAKVQNIVQNIGAAFLEI 70 >gi|238924054|ref|YP_002937570.1| ribonuclease G and E [Eubacterium rectale ATCC 33656] gi|238875729|gb|ACR75436.1| ribonuclease G and E [Eubacterium rectale ATCC 33656] gi|291528890|emb|CBK94476.1| Ribonucleases G and E [Eubacterium rectale M104/1] Length = 402 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 150/330 (45%), Gaps = 7/330 (2%) Query: 157 PEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKG 216 + + + +E + +LVQ++K+ K VTT LS+ G +L ++ Sbjct: 74 NDAKNPVYTNKKSKKEGLCEGDEILVQVIKDALKTKDPVVTTKLSIFGSNVILTNFDTQI 133 Query: 217 ETISRKITNPVDRKNLKEIARGLEVPA---GMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 S+ + L++ G G+I+RT + + +D + + +D Sbjct: 134 GVSSKL--DKERAALLRKAVLLSCADHEKEGYGIIVRTNAKNVEDKAVSQDAYSVAQKYD 191 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 + + A + VY + ++ + + I + Y + + Sbjct: 192 QIIKKAPHQALYSCVYHGMSDYLLLMKTIDFATVEWIKTDCDDIYDSLLTEYGIYDHAPE 251 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 +I+R + + GI +D+L V L G +II Q E L IDVNS ++ Sbjct: 252 KIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSG 311 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 L+TN+EAA+EIARQLRLR+++G+I++DFI+M+ + + ++ ++LK +K D Sbjct: 312 SNS--ILKTNMEAAKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELKRYIKDDNTV 369 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 I+ GL+E++R+++ S+ + K Sbjct: 370 CTFVDITKLGLVELTRKKVHKSLKQILEKT 399 Score = 55.0 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 15 TRVVVL-RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 T ++ + ++ K I NIY A+V ++ P + AAFV N+ +L + Sbjct: 17 TVYALMDENGNYKDFQL-LPEKDTIINNIYAARVNKILPGINAAFVTIAQNKSCYLSLND 75 Query: 74 IHPDYYQIPFSDRQALLKESNI 95 Y S ++ L + I Sbjct: 76 AKNPVYTNKKSKKEGLCEGDEI 97 >gi|154506681|ref|ZP_02043138.1| hypothetical protein RUMGNA_03949 [Ruminococcus gnavus ATCC 29149] gi|153793280|gb|EDN75703.1| hypothetical protein RUMGNA_03949 [Ruminococcus gnavus ATCC 29149] Length = 413 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 169/393 (43%), Gaps = 8/393 (2%) Query: 89 LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148 L KE I E H + + H + I + +I +A ++ Sbjct: 9 LKKEGKIWTFLLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFIEIAPG 68 Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 E S + I L+VQI +E K V++ ++ GRY+V Sbjct: 69 KECYYDLSQAPQAIFTHKIGKKPLCI--GDELVVQISREAVKTKAPTVSSNINFTGRYAV 126 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 L ++ T + + ++ + G+I+RT + + + L Sbjct: 127 LTTGNTRIGTSGKLPRS---LRDTYKEKLSHLKNEDYGLIIRTNAKDVPFETVLEEIQKL 183 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK-L 327 ++E A + E ++++Y +S II K Y++ F++ Sbjct: 184 ENACVKLKETAPFRTCFSCLQEAPPSYITDLKNVYADGLSAIITDDPKLYQQIHGFLQAE 243 Query: 328 LMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSG 387 +++ E P+ ++ ++ + V L + Y++I TEAL +DVNSG Sbjct: 244 QPEDLSKLQFYEEQLLPLSKLYSTDIAVERALKEYVWLKNGAYLVIQPTEALTVVDVNSG 303 Query: 388 RST--REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 + + + +T L+ NLEAA+E ARQ+RLR+++G+I++DFI+M++ + + K+ + Sbjct: 304 KYSAKTKKKSAETYLKINLEAAKETARQIRLRNISGIILIDFINMDDPDMMQELLKQFRR 363 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L +D + V ++ L+E++R+++R + E Sbjct: 364 FLGEDPIQTSVVDVTALQLVEVTRKKVRRPLHE 396 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Query: 19 VLRDNRVEELDF---ESEHKKQIK-GNIYLAKVTRVEPSLQAAFVDY 61 +L ++ + E+ +S+ +Q G+IY+ KV + ++ AAF++ Sbjct: 19 LLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFIEI 65 >gi|16800646|ref|NP_470914.1| hypothetical protein lin1578 [Listeria innocua Clip11262] gi|16414065|emb|CAC96809.1| lin1578 [Listeria innocua Clip11262] Length = 453 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 176/396 (44%), Gaps = 23/396 (5%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + VQIV+E K ++ L +G + + +IS++I + K + E Sbjct: 80 QGAKIPVQIVREGSATKLPLLSAVLEFSGDLLIYLHGKEY-ISISKRIQDKEPLKIIMES 138 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 +I+R++ + TK +++ + + + A P L+ + + Sbjct: 139 LLE----ENEAIIIRSSAETATKEQLELALNQAREKYQTLVKEAETRKKPGLLLSAASGV 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + + + I++ + +F K++ ++ + +F GI+ Q+ Sbjct: 195 FLSTKQFIQRYMPIEIITDD------FEFAKIVEANFTDKEVSLKKSADLFADLGIKQQM 248 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L + V L + + I +TEA+ +DVNS R E T N++A EI RQ+R Sbjct: 249 DRLSRPVVHLSNGSSLFIEKTEAMWVVDVNSSRFKGTSAKEKTVEAVNIKAVPEIFRQIR 308 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+++G+I+VDFI ++ + + +++ ++ QV A++ GLL+++R++ + S Sbjct: 309 LRNMSGMILVDFIGGMSEEGQGELREAIEKESLEEYITTQVAALTQSGLLQLTRRKKQQS 368 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL-LNQ 534 LE TT C C G G++ S+ ++A + R + ++ + ++ T + +L LN Sbjct: 369 FLEVTTIPCPVCYGTGHVASKDTLAFQLERELSGIMMGDPSSIQVITTEDVLDAFLDLNT 428 Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 429 FNNAPIDWE---------VADERV--PFYQIARVEN 453 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I+A+++ E RV VL D+ + +++ K G+I+ + +++ + AAFVD G Sbjct: 2 KKLVINAANI-EKRVAVLEDDVLIDVEIIRPSNKIQVGDIFYGFIQKIDRKMDAAFVDLG 60 Query: 63 GNRHGFLPFLEIHPDY-----YQIPF 83 GF+ +I Y +IP Sbjct: 61 NQNKGFIHLKDIPASYEKTQGAKIPV 86 >gi|300926010|ref|ZP_07141833.1| hypothetical protein HMPREF9548_04038 [Escherichia coli MS 182-1] gi|300417954|gb|EFK01265.1| hypothetical protein HMPREF9548_04038 [Escherichia coli MS 182-1] Length = 102 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|209964944|ref|YP_002297859.1| ribonuclease, Rne [Rhodospirillum centenum SW] gi|209958410|gb|ACI99046.1| ribonuclease, Rne [Rhodospirillum centenum SW] Length = 392 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 146/318 (45%), Gaps = 9/318 (2%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 + +R+ I ++++ Q +LVQ+ + G+KGA +T ++L GR+ V P S R Sbjct: 80 RDRREARIGQLLRTGQAVLVQVKADAHGDKGAVLTMDVTLPGRFLVHAPLGSGLHLSRRL 139 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 P + + R L G G I+R AS + + E L W A + Sbjct: 140 GRGPERARV-QATLRDLLPAEG-GWIVRADAASADPGLLALEAESLWADWRQAARAADGA 197 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 AP L+ RA+ + I V G + E + + + P +VR + Sbjct: 198 GAPALLLPAPTAPVRALLEFGGAGFDAIRVEGAEALAEVRRWCRDRAPDLEPLVRPHVAR 257 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 +F + + +L + V L G ++I +TEAL IDVN G L T Sbjct: 258 LSLFEEGDLAGAIAALAERRVPLAQGGSLVIERTEALTVIDVNGG-------ERGNPLST 310 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 NLEAA EIARQLRLR++ G++VVDF++M + + L +++ +D A V +S Sbjct: 311 NLEAAREIARQLRLRNVGGIVVVDFVNMAAAADREHLLLTLTQAVSEDPAGTHVYGLSKL 370 Query: 463 GLLEMSRQRIRSSVLEST 480 GL+EM+R R V + Sbjct: 371 GLMEMTRSRRGPPVADLL 388 Score = 71.9 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ + ID S +R +LRD + +L + + G++ L +V RV L AAFV+ Sbjct: 1 MSRALHIDRSGPL-SRAALLRDGELSDLHLDRLDRPAWLGSLRLGRVVRVVAGLDAAFVE 59 Query: 61 YGGNRHGFLPFLEIHP 76 G G L ++ P Sbjct: 60 IGDRLPGLLNAADVRP 75 >gi|297170736|gb|ADI21759.1| ribonucleases G and E [uncultured actinobacterium HF0130_15N16] Length = 102 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|295097735|emb|CBK86825.1| S1 RNA binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 145 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|289434823|ref|YP_003464695.1| ribonuclease, Rne/Rng family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171067|emb|CBH27609.1| ribonuclease, Rne/Rng family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 450 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 88/458 (19%), Positives = 179/458 (39%), Gaps = 35/458 (7%) Query: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKN----- 176 E + + E I + + + + V +R+ I Sbjct: 19 ENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLGNQRKGFIHLKDIPDIYEK 78 Query: 177 --RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 L VQ+V+E K +T L +G V + R + + ++ Sbjct: 79 TQGAKLPVQVVREGSATKLPLLTAVLEFSGDLLVYLHGKEYVSISKRIMDKDSLKTTMEA 138 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + VI+R+ + T+ +++ + + + P L+ + + Sbjct: 139 LLLE-----DEAVIIRSDAENATEEQLENALNEARERYQQLVRKSKKRKKPGLLKDSDSG 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + + + + I++ + + ++ D + IF I+ Q Sbjct: 194 VFSSAKQFIQRYQPIEILTDDFDFAKSIDVDGE---------VIVKKSADIFADLKIQPQ 244 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 ++ L + V L + + I +TEA+ IDVNSG E T N +A EI RQ+ Sbjct: 245 MERLARPVVHLTNGSSLFIEKTEAMWVIDVNSGGYKGSTEKEKTVALINQKAVSEILRQI 304 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR+++G+I+VDFI ++ + + ++ +++ Q+ A+S GLL+++R++ + Sbjct: 305 RLRNMSGMILVDFIGGMSEEGYTELYETIERQTREEYTTTQIAALSQSGLLQLTRRKKQR 364 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV--VLYLL 532 S LE TT C C G G++ S+ ++A + R + ++Q +I + T DV L Sbjct: 365 SFLEVTTIPCPVCYGTGHVASKDTLAYQLERELT-GIMQGEPDSIQIITTEDVLDAFLDL 423 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 N +++E V + + I + Sbjct: 424 NILNEAPIDWE---------VADERV--PFYQILRVEN 450 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I A+H+ E R+ VL ++ + +++ +K G+I+ + +++ + AAFVD G Sbjct: 2 KKVVISAAHI-EKRIAVLENDLLIDMEIIRPSEKIQVGDIFYGFIQKIDRKINAAFVDLG 60 Query: 63 GNRHGFLPFLEIHPDYY 79 R GF+ +I PD Y Sbjct: 61 NQRKGFIHLKDI-PDIY 76 >gi|291538931|emb|CBL12042.1| Ribonucleases G and E [Roseburia intestinalis XB6B4] Length = 383 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 19/324 (5%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP-VDRKNLKEI 235 LLVQ+VKE K +V+T L+ G+Y +L K S+ + E Sbjct: 60 GDELLVQVVKEALKTKDPSVSTNLTFTGKYVILTTGKRKIGASSKLPKEKREKLLKIVED 119 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 + GVI+RT A +K E+ + L + A + LV++E Sbjct: 120 FLSGKEQIPYGVIVRTNAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPW 179 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA------------------RIVR 337 ++ + LY ++ E++ + + + + +I Sbjct: 180 QKMLNGLYETELGEVVTDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRY 239 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 ++ + SGI QL + V L S Y+II TEAL IDVN+G++ + +++ Sbjct: 240 YEDEMVSLSALSGITSQLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQE 299 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 L+ N+EAAEEIARQLRLR+++G+++VDFI++E K + +LKKD Q+ Sbjct: 300 NFLKVNIEAAEEIARQLRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIV 359 Query: 458 AISNFGLLEMSRQRIRSSVLESTT 481 ++ GL+E++R++I+ S+ ES + Sbjct: 360 EMTKLGLVEVTRKKIKKSLRESLS 383 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94 GNIY+ +V V +L AAFV ++ +LP E+ + S+++A+ Sbjct: 8 GNIYIGRVENVVKNLNAAFVCIAPRQNCYLPLQELKNPVFTKKQSEKKAICAGDE 62 >gi|289809399|ref|ZP_06540028.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 220 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|291536205|emb|CBL09317.1| Ribonucleases G and E [Roseburia intestinalis M50/1] Length = 418 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 19/324 (5%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP-VDRKNLKEI 235 LLVQ+VKE K +V+T L+ G+Y +L K S+ + E Sbjct: 95 GDELLVQVVKEALKTKDPSVSTNLTFTGKYVILTTGKRKIGASSKLPKEKREKLLKIVED 154 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 + GVI+RT A +K E+ + L + A + LV++E Sbjct: 155 FLSGKEQIPYGVIVRTNAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPW 214 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA------------------RIVR 337 ++ + LY ++ E++ + + + + +I Sbjct: 215 QKMLNGLYETELGEVVTDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRY 274 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 ++ + SGI QL + V L S Y+II TEAL IDVN+G++ + +++ Sbjct: 275 YEDEMVSLSALSGITSQLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQE 334 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 L+ N+EAAEEIARQLRLR+++G+++VDFI++E K + +LKKD Q+ Sbjct: 335 NFLKVNIEAAEEIARQLRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIV 394 Query: 458 AISNFGLLEMSRQRIRSSVLESTT 481 ++ GL+E++R++I+ S+ ES + Sbjct: 395 EMTKLGLVEVTRKKIKKSLRESLS 418 Score = 60.4 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Query: 3 NKMLIDASHVE--ETRVVVLRD--NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 N+ +I + +E E R+ L D ++ E+ ES + GNIY+ +V V +L AAF Sbjct: 2 NRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAAF 61 Query: 59 VDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94 V ++ +LP E+ + S+++A+ Sbjct: 62 VCIAPGQNCYLPLQELKNPIFTKKQSEKKAICAGDE 97 >gi|145640374|ref|ZP_01795958.1| ribonuclease E [Haemophilus influenzae R3021] gi|145274960|gb|EDK14822.1| ribonuclease E [Haemophilus influenzae 22.4-21] Length = 237 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TRVEPSL+AAFVDYG Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 Score = 85.0 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 F+ + I++++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMP 131 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L+VP G+G+I+RTAG ++ E++ D + L+ Sbjct: 132 NNPRAGGISRRIEGDERTE-LKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHH 190 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY 318 W+ +++ + + AP L+++E ++I RAIRD +DI EI++ K + Sbjct: 191 WEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKNF 237 >gi|240144146|ref|ZP_04742747.1| ribonuclease, Rne/Rng family [Roseburia intestinalis L1-82] gi|257203849|gb|EEV02134.1| ribonuclease, Rne/Rng family [Roseburia intestinalis L1-82] Length = 418 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 153/324 (47%), Gaps = 19/324 (5%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNP-VDRKNLKEI 235 LLVQ+VKE K +V+T L+ G+Y +L K S+ + E Sbjct: 95 GDELLVQVVKEALKTKDPSVSTNLTFTGKYVILTTGKRKIGASSKLPKEKREKLLKIVED 154 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 + GV++RT A +K E+ + L + A + LV++E Sbjct: 155 FLSGKEQIPYGVVVRTNAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPW 214 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA------------------RIVR 337 ++ + LY ++ E++ + + + + +I Sbjct: 215 QKMLNGLYETELGEVVTDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRY 274 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIED 397 ++ + SGI QL + V L S Y+II TEAL IDVN+G++ + +++ Sbjct: 275 YEDEMVSLSALSGITSQLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQE 334 Query: 398 TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVG 457 L+ N+EAAEEIARQLRLR+++G+++VDFI++E K + +LKKD Q+ Sbjct: 335 NFLKVNIEAAEEIARQLRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIV 394 Query: 458 AISNFGLLEMSRQRIRSSVLESTT 481 ++ GL+E++R++I+ S+ ES + Sbjct: 395 EMTKLGLVEVTRKKIKKSLRESLS 418 Score = 60.8 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Query: 3 NKMLIDASHVE--ETRVVVLRD--NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 N+ +I + +E E R+ L D ++ E+ ES + GNIY+ +V V +L AAF Sbjct: 2 NRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAAF 61 Query: 59 VDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94 V ++ +LP E+ + S+++A+ Sbjct: 62 VCIAPGQNCYLPLQELKNPIFTKKQSEKKAICAGDE 97 >gi|121587610|ref|ZP_01677375.1| ribonuclease G [Vibrio cholerae 2740-80] gi|121548183|gb|EAX58255.1| ribonuclease G [Vibrio cholerae 2740-80] Length = 218 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++L++ + ETRV ++ ++E+ E E K+ I GNIY KV+RV P +QAAFVD Sbjct: 1 MSAELLLNVT-PSETRVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIVP 75 >gi|213618936|ref|ZP_03372762.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 272 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|213417522|ref|ZP_03350664.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 141 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNRHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 62 AERHGFLPLKEIAREYF 78 Score = 44.2 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 Query: 212 NTSKGETISR 221 N + ISR Sbjct: 132 NNPRAGGISR 141 >gi|296104961|ref|YP_003615107.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059420|gb|ADF64158.1| ribonuclease G [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 211 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|331091098|ref|ZP_08339940.1| hypothetical protein HMPREF9477_00583 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405320|gb|EGG84856.1| hypothetical protein HMPREF9477_00583 [Lachnospiraceae bacterium 2_1_46FAA] Length = 378 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 176/374 (47%), Gaps = 4/374 (1%) Query: 108 THGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQ 167 + ++ + + E+ + I +VSN++ + V + Sbjct: 6 ENVLTSVKENDEIVELHISNTEDKYRLGNIYIGKVKKIVSNIQAAFIEIDKGVECYYDMT 65 Query: 168 YCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV 227 + ++ + L+VQI KE K AVT +S G+Y VL ++ S+ + Sbjct: 66 EHGNKPLRVGEELIVQISKEAIKTKQPAVTRKISFTGKYCVLTVGDNRISFSSKI--DKE 123 Query: 228 DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHL 287 R+ L++ G ILRT +I + L+ ++ + +A V Sbjct: 124 KREELRQFM-EPYHSEKYGFILRTNAKGAAVCDIAEEINRLIEEYEYIFRIAPTRVCFSC 182 Query: 288 VYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFF 347 + E ++++Y + +++I++ ++ Y F++ P +R YED Sbjct: 183 LKENEKPYIADLKNIYQEGLTDIVIEDKEIYNHVYSFLQREQPEDLDKLRLYEDKQLPLA 242 Query: 348 R-SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 + IE L + + V L S Y++I TEAL IDVN+G+ + E L+ N+EA Sbjct: 243 KLYSIETVLQNALKERVWLKSGAYLVIQPTEALTVIDVNTGKCIGKKRDEVAYLKINIEA 302 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A+E+ARQ+RLR+L+G+I+VDFI++++K+ + LK L+KD + + ++ L+E Sbjct: 303 AKEVARQIRLRNLSGIILVDFINLDDKEKWEELLNYLKIHLRKDPIQTVLVDVTKLQLVE 362 Query: 467 MSRQRIRSSVLEST 480 ++R+++R + E+ Sbjct: 363 ITRKKVRKPLHENI 376 Score = 61.1 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 V ++ + EL + K GNIY+ KV ++ ++QAAF++ Sbjct: 12 VKENDEIVELHISNTEDKYRLGNIYIGKVKKIVSNIQAAFIEI 54 >gi|260437118|ref|ZP_05790934.1| ribonucleases G and E [Butyrivibrio crossotus DSM 2876] gi|292810430|gb|EFF69635.1| ribonucleases G and E [Butyrivibrio crossotus DSM 2876] Length = 386 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 179/388 (46%), Gaps = 14/388 (3%) Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155 + ++ + +D ++ + + + I +I SA ++ + Sbjct: 10 REKNTAVLFEDGKETEIRVIEEE-GSILNNIYVGRVNKVVPNINSAFVEISKGIICYLPI 68 Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSK 215 + E V ++ I+LVQ+VK+ K VT L+++G+Y + + Sbjct: 69 NEEHVIFLNRKNTDKVCQ---GDIVLVQVVKDAIKTKRPMVTCKLNISGKYVAISFDNKG 125 Query: 216 GETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNV 275 +S+KIT+ LK + + G I+RT +I + L+ ++++ Sbjct: 126 IIGVSKKITDSRRIAELKTLLKEYATD-EYGFIVRTEAEHADNKDICDEALKLVNEFEDI 184 Query: 276 RELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI 335 ++ A L+ + GN + + + + E+I + Y D + Sbjct: 185 VRISSMRPAFTLIKKGGNSVDDMVSSMKLRKEDEVITDIPEIYEALSD-------KEYTV 237 Query: 336 VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRST-REHC 394 + + IE ++ V L GY++I QTEAL IDVN+G+ ++ Sbjct: 238 SLYQDTMISLKTLYNIEKIINDALSKYVWLKRGGYLVIEQTEALTVIDVNTGKYDGKDKD 297 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 EDT L+ N+EAAEE+ RQLRLR+++G++VVDFI+M++ N + + +L LKKD + Sbjct: 298 REDTFLKINMEAAEEVERQLRLRNISGIVVVDFINMKDD-NIKILTDELCTQLKKDIVKC 356 Query: 455 QVGAISNFGLLEMSRQRIRSSVLESTTK 482 + + GL+E++RQ+IR S++E TK Sbjct: 357 KYVDYTKLGLVEITRQKIRRSLIEYFTK 384 Score = 49.2 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 K++I + T V+ D + E+ E + I NIY+ +V +V P++ +AFV+ Sbjct: 2 KKLVITGYREKNT-AVLFEDGKETEIRV-IEEEGSILNNIYVGRVNKVVPNINSAFVEIS 59 Query: 63 GNRHGFLPFLEIH 75 +LP E H Sbjct: 60 KGIICYLPINEEH 72 >gi|195953000|ref|YP_002121290.1| RNA binding S1 domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932612|gb|ACG57312.1| RNA binding S1 domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 384 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 145/307 (47%), Gaps = 9/307 (2%) Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 K ++VQ+ KE KGA +TT LS G+Y + +T + + + + Sbjct: 75 YKIGDYVVVQVKKEPSKFKGAKLTTKLSFKGKYIIYYEADKSVKTS--HLFDENFKSDYI 132 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 + L VI+RT + I ++ E+ + +R+++ ++ + + Sbjct: 133 DKVYRLLREKE-SVIIRTQAKNVDISRIGQELEFYRKKAKLIRDISHKAIMQ--LEPKEP 189 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 I+D ++ + + V D + +E Sbjct: 190 CYVSMIKDYVGGIEKIVVSDIKVYNNIVGFILSN---DLNINVEMIIDKESLENLYEVEK 246 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++ L V L S G+++I +TEA+ +IDVNSG++T + CIE ++ TNLEAA+EI RQ Sbjct: 247 HINRLLSKYVWLESGGFLVIEETEAMTTIDVNSGKNTCD-CIESSSYSTNLEAAKEIPRQ 305 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 ++LR++ G+I++DFI M+++ + + V LK KD + V + GL+E++R++ Sbjct: 306 IKLRNIGGIIMIDFIFMKDQVHRKEVLDVLKNGFSKDNVQTTVYGYTALGLMEIARKKTG 365 Query: 474 SSVLEST 480 S+ ++ Sbjct: 366 RSLFQTI 372 Score = 44.2 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 69/195 (35%), Gaps = 17/195 (8%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 + + N + ++ ++ + + +I+L K+ + ++ FVD G + G+LPF E Sbjct: 16 LFKSNELLDIKVDNLNDPEYSSSIFLGKIKSIANGVEGYFVDIGLKKDGYLPFKE----- 70 Query: 79 YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138 +D++ + + + Q E + T + + A+ S +T Sbjct: 71 -----ADKEYKIGDYVVVQVKKE-PSKFKGAKLTTKLSFKGKYIIYYEADKSVKTSHLFD 124 Query: 139 ISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQE------VIKNRQILLVQIVKEERGNK 192 + +D + V + + + + I + + L+ I + Sbjct: 125 ENFKSDYIDKVYRLLREKESVIIRTQAKNVDISRIGQELEFYRKKAKLIRDISHKAIMQL 184 Query: 193 GAAVTTYLSLAGRYS 207 Y+S+ Y Sbjct: 185 EPKEPCYVSMIKDYV 199 >gi|213420630|ref|ZP_03353696.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 238 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV + ++E+ E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|330955428|gb|EGH55688.1| ribonuclease E [Pseudomonas syringae Cit 7] Length = 351 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 118/279 (42%), Gaps = 1/279 (0%) Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 +DFIDM KN R+VE+K++ESL+ DRARVQ+G IS FGLLEMSRQR+R S+ ES+ VC Sbjct: 1 IDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVC 60 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544 C G G IR S++L+ILR +EE L+ + V +LLN+KR +I + E Sbjct: 61 PRCNGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIEL 120 Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 R I ++ +L F +++ ++ + A + + I + L Sbjct: 121 RTRARIIILPNDQLETPHFEVQRLRDDSPEAHSSQTSYEIAAAAAEVEEIAPLAAATRTL 180 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 ++ +++ + G+V + S+ ++ Sbjct: 181 VRQEA-AVKTAPARANAPVPVEAAAPAATPAPAPAAHEPSLFKGLVKSLVSLFATKEEPV 239 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 + + N E + Sbjct: 240 APVVVEKPVAEQRPARNEERRNGRQQSRGRNNRRDEERK 278 >gi|167470808|ref|ZP_02335512.1| ribonuclease E [Yersinia pestis FV-1] Length = 238 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 53/75 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 1 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60 Query: 65 RHGFLPFLEIHPDYY 79 RHGFLP EI +Y+ Sbjct: 61 RHGFLPLKEISREYF 75 Score = 86.2 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 6/228 (2%) Query: 97 QTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----D 151 + A+ D D+ I + ++ A I E S+ +A D + Sbjct: 9 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 68 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + I++V++ Q ++VQ+ KEERGNKGAA+TT++SLAG Y VLMP Sbjct: 69 EISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMP 128 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 N + ISR+I + LKE L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 129 NNPRAGGISRRIEGDDRTE-LKEALSSLQLPDGMGLIVRTAGVGKSSDALQWDLSFRLKH 187 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 WD +++ A AP L+++E N+I RA RD DI EI++ K Sbjct: 188 WDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLE 235 >gi|288962444|ref|YP_003452739.1| ribonuclease G [Azospirillum sp. B510] gi|288914710|dbj|BAI76195.1| ribonuclease G [Azospirillum sp. B510] Length = 411 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 153/336 (45%), Gaps = 21/336 (6%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 SP P+ + I +++ Q +LVQ+ + G+KG ++T ++L GR+ V P Sbjct: 80 DDDSSPSRPPRPGAKPAPIGALLRTGQPVLVQVKADAVGSKGPSLTMDITLPGRFLVHAP 139 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + +S+++ + +R L L G G I+R A + + + E L Sbjct: 140 -LGRDIAVSKRLGSGPERAALAHRIEALVT--GAGWIVRAGAAQVSDALLAAESEALHLQ 196 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGY-----------RE 320 W +R+ A AP ++ + RA+ + + I+V+ Sbjct: 197 WRAIRDEARAGSAPRPLHPGPDAPTRALIEQGAAVPATILVNDPAPPGRIAVGDGPLLSG 256 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 + + P + + + +F ++ + L V LP G ++I +TEAL Sbjct: 257 LRGWCGHHAPDLLPRLDGHRETQRLFDLRDLDSAIAGLLDIRVPLPLGGSLVIERTEALT 316 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 IDVN+G L+ NL+AA EIARQLRLR++ G++VVDF++M + + V Sbjct: 317 VIDVNAG-------ERGNPLEVNLDAAAEIARQLRLRNVGGIVVVDFVNMRGRGDAERVL 369 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 L +++ D + Q+ +S GL+E++R R + + Sbjct: 370 AALSQAVDSDPVQTQIYGMSKLGLVELTRARRGTPL 405 Score = 75.8 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 1 MAN-KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ ++L+D TR VL D R+ +L + + + G I L +V R+ L AF+ Sbjct: 1 MSRLELLVDRDGPL-TRAAVLADGRLTDLYIDHADRPSLLGAIILGRVERIATGLNGAFI 59 Query: 60 DYGGNRHGFLPFLEI 74 D G G LP ++ Sbjct: 60 DLGNGLPGLLPAADV 74 >gi|149913556|ref|ZP_01902089.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. AzwK-3b] gi|149812676|gb|EDM72505.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. AzwK-3b] Length = 341 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 126/305 (41%), Gaps = 38/305 (12%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + Q +LVQ+ + K VT+ L RY+++ P+ G +SR I + R L Sbjct: 73 RPGQAVLVQVTGQPEPGKALPVTSRLLYKSRYAIVTPDAP-GLNVSRSIRDEDRRDALLA 131 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 IA A MG+ILR++ A + +I D + L V E A + L +G Sbjct: 132 IAHAEMGDAEMGLILRSSCAEASDDDIADDIRAMHDLAQAVAEDAEGAGPEKLTEGDGP- 190 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 LL V + + F G+ Q Sbjct: 191 -------------------------------HLLAWREWTDVAELDTTPGSFAAHGVLDQ 219 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 +++L Q + L ++I T AL+++DVN+G + NL AA+E+ R L Sbjct: 220 IEALRQPDCPLSGGASMVIEPTRALIAVDVNTGGDMSPAS----GFKANLAAAKELPRHL 275 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR L G IV+D M KK+ R E L+ + + DR + + G E+ R+R R Sbjct: 276 RLRGLGGQIVIDPAPM-PKKDRRQFETTLRAAFRADRVETALVGWTPLGHFELQRKRDRI 334 Query: 475 SVLES 479 ++ E Sbjct: 335 ALSEV 339 >gi|289676059|ref|ZP_06496949.1| ribonuclease G [Pseudomonas syringae pv. syringae FF5] Length = 144 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + E+RV V+ + ++E+ E ++ I GNIY KV RV P +QAAF+D Sbjct: 1 MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEI 74 G +R F+ EI Sbjct: 60 IGLDRAAFIHASEI 73 >gi|159043533|ref|YP_001532327.1| ribonuclease [Dinoroseobacter shibae DFL 12] gi|157911293|gb|ABV92726.1| ribonuclease [Dinoroseobacter shibae DFL 12] Length = 347 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 126/306 (41%), Gaps = 36/306 (11%) Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 + LLVQ+ K VT + RY ++ PN G ++R I R +L+ Sbjct: 75 RRPGDRLLVQVSGVAEPGKAVPVTDRVLYKSRYVIVTPNAP-GVNVARSIREEERRASLR 133 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 +A + A G+ILR+A A + ++ D + L V+ L+ + + Sbjct: 134 LLAEDVLDGADTGLILRSAAAQADEDTLREDISETLALAMAVQ-ADAEGEGSALLLDAPD 192 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 A RD EI+ F R G+ Sbjct: 193 AHHLAWRDWSDPVPDEIVTDP-----------------------------GGFERHGVLD 223 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 L +L +V+L V I T ALV++DVN+GR L+ NL AA + RQ Sbjct: 224 ALHALVDPQVSLSGGASVFIEPTRALVAVDVNTGRDVSPA----AGLKANLAAARALPRQ 279 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G IVVDF M KK+ + +E+ L+ + + D + + G E+ R+R R Sbjct: 280 LRLRGLGGQIVVDFAPM-PKKDRKQLEQSLRAAFRADPVETSLVGWTPLGHYELQRKRDR 338 Query: 474 SSVLES 479 +S+ S Sbjct: 339 ASLRRS 344 >gi|226329356|ref|ZP_03804874.1| hypothetical protein PROPEN_03261 [Proteus penneri ATCC 35198] gi|225202542|gb|EEG84896.1| hypothetical protein PROPEN_03261 [Proteus penneri ATCC 35198] Length = 88 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L++ + ETRV +R ++E+ E E K+ I GNIY +V+RV P +QAAF+D Sbjct: 1 MTAELLVNVT-PSETRVAYIRGGILQEIHVEREAKRGIVGNIYKGRVSRVLPGMQAAFID 59 Query: 61 YGGNRHGFLPFLEIHP 76 G ++ FL +I P Sbjct: 60 IGLDKAAFLHASDIMP 75 >gi|99078528|ref|YP_611786.1| ribonuclease [Ruegeria sp. TM1040] gi|99035666|gb|ABF62524.1| ribonuclease Rne/Rng family [Ruegeria sp. TM1040] Length = 340 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 114/306 (37%), Gaps = 39/306 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q+LLVQ+ K VT L RY+++ P+ G ISR I + +R L EI Sbjct: 74 PGQMLLVQVTGYAEPGKALPVTQKLLFKSRYAIVTPDAP-GLNISRSIRDDDERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A G+ILR+ A EI D ++ V E + N Sbjct: 133 AHSEMDGVEYGLILRSVCAGADPDEIAEDIAAMVTAARQVLEDSSNQSEVL--------- 183 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 D L E F R G+ L Sbjct: 184 ------------------------HEGDAPHLQAWREWTAPADIEQEPGGFERCGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++L ++ + Y+ + T ALV++DVN+G T ++ N+ A + R LR Sbjct: 220 EALQSGKIAIGGGAYLYVEPTRALVAVDVNTGSDTSLA----AGIKANMACARNLPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 L G IV+D M KK+ R+ E L+ + K D + + G E+ R+R R Sbjct: 276 CLGLGGQIVIDAAPM-PKKDRRAFETALRTAFKSDPEETTLAGWTTLGHFELQRKRARLP 334 Query: 476 VLESTT 481 + E + Sbjct: 335 LSEILS 340 >gi|114569683|ref|YP_756363.1| RNA-binding S1 domain-containing protein [Maricaulis maris MCS10] gi|114340145|gb|ABI65425.1| RNA binding S1 domain protein [Maricaulis maris MCS10] Length = 357 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 7/257 (2%) Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 + + + ++L R E +E D + +V +P G Sbjct: 107 VDVEPGEAPDCLEPAEILAQRLVRTFGDAEAQWADETDFDLEAAFDEALEPQVAIPGGGS 166 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 + I T A+ +IDV++ + A+Q N AA+E ARQ R+R + G++ +DF+ M Sbjct: 167 LYIETTRAMTTIDVDADGRKGQGNAAQLAVQLNNSAAKEAARQARMRGIGGILAIDFVHM 226 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 + + ++VE+ L+ + ++DRA+V V +S F + E++RQR ++ E + G Sbjct: 227 RGQPDRKAVEQTLRGAFRRDRAKVDVAPLSQFCIGEVARQRRGRTLSEIMLES----DGR 282 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 + + AL+ LR ++ + + +V +L + A R G Sbjct: 283 PTV---ETAALTALRRLDAEARSDRSRKQRLTVGPEVFNWLDSDTIAWRAALTDRIGARF 339 Query: 551 NVVIGIELADKLFYIEK 567 + ELA + + Sbjct: 340 ELTENPELARNACRVGR 356 Score = 88.5 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFES---EHKKQIKGNIYLAKVTRVEPSLQAA 57 M ++LI+ + ETR V + R+ EL + ++ I+G IY +V RVEP+L AA Sbjct: 1 MNRQILIEENIG-ETRAAVAENGRIVELFLDRWSEAGQRVIEGEIYRGRVRRVEPALNAA 59 Query: 58 FVDYGGNRHGFLPF 71 FVD G GFLPF Sbjct: 60 FVDLGVGEEGFLPF 73 >gi|330891479|gb|EGH24140.1| ribonuclease E [Pseudomonas syringae pv. mori str. 301020] Length = 76 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 55/76 (72%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+AAFVD+G Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60 Query: 65 RHGFLPFLEIHPDYYQ 80 RHGFLP EI +Y++ Sbjct: 61 RHGFLPLKEISREYFK 76 >gi|167767404|ref|ZP_02439457.1| hypothetical protein CLOSS21_01923 [Clostridium sp. SS2/1] gi|167711379|gb|EDS21958.1| hypothetical protein CLOSS21_01923 [Clostridium sp. SS2/1] Length = 379 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 9/316 (2%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 K +LVQI KE K ++ + L G Y VL + IS KI Sbjct: 71 MRHRQYKAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKL-SVGISNKIHQKEK 129 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 ++ LKE+A L V G ILRT A K ++ + + L + + APHLV Sbjct: 130 KQELKEMAETL-VTQEYGFILRTEAAKADKEDVLMEADQLSAKYHEIVSKRQYRKAPHLV 188 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 + ++ + D+ I I+ E+ + K+ + I R Sbjct: 189 DTNYDALEVLVHDIKPGSIDRIVTDQEEVGEQLKEKGYEV-------FLCSYMAGDIERR 241 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 L + + ++ + S G++ I QTEA+ IDVN+G+S + E + NLEAA+ Sbjct: 242 YRFRHYLSEVFKRKIFMKSGGFLYIEQTEAMAVIDVNTGKSIGKKNQEAHIKKINLEAAK 301 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 E ARQ+RLR+L+G+I++DFIDM+ K + + + + ++ L D + I+ G++E++ Sbjct: 302 EAARQIRLRNLSGIIMIDFIDMKSKDDEKELLQVMQHYLNGDSKKAVAVDITKLGIMEIT 361 Query: 469 RQRIRSSVLESTTKVC 484 R++ ++ + + Sbjct: 362 RKKEKNPIFRQISIDI 377 Score = 57.7 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 +L+D E SE K GNIY+ V V ++ AFV++ + GFL H Y Sbjct: 19 LLKDGHPVEFQCLSEKNKVDIGNIYIGVVKNVVKNINGAFVEFDQDEIGFLSMR--HRQY 76 Query: 79 YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138 + + L++ A + + D S + I+N + E++ Sbjct: 77 ----KAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKLSVGISNKIHQKEKKQE 132 Query: 139 ISANND 144 + + Sbjct: 133 LKEMAE 138 >gi|291559280|emb|CBL38080.1| Ribonucleases G and E [butyrate-producing bacterium SSC/2] Length = 379 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 9/316 (2%) Query: 169 CIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVD 228 K +LVQI KE K ++ + L G Y VL + IS KI Sbjct: 71 MRHRQYKAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKL-SVGISNKIHQKEK 129 Query: 229 RKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLV 288 ++ LKE+A L V G ILRT A K ++ + + L + + APHLV Sbjct: 130 KQELKEMAETL-VTQEYGFILRTEAAKADKEDVLMEADQLSAKYHEIVSKRQYRKAPHLV 188 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR 348 + ++ + D+ I I+ E+ + K+ + I R Sbjct: 189 DTNYDALEVLVHDIKPGSIDRIVTDQEEVGEQLKEKGYEV-------FLCSYMAGDIERR 241 Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 L + + ++ + S G++ I QTEA+ IDVN+G+S + E + NLEAA+ Sbjct: 242 YRFRHYLSEVFKRKIFMKSGGFLYIEQTEAMAVIDVNTGKSIGKKNQEAHIKKINLEAAK 301 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 E ARQ+RLR+L+G+I++DFIDM+ K + + + + ++ L D + I+ G++E++ Sbjct: 302 EAARQIRLRNLSGIIMIDFIDMKSKDDEKELLQVMQHYLNGDSKKAVAVDITKLGIMEIT 361 Query: 469 RQRIRSSVLESTTKVC 484 R++ ++ + + Sbjct: 362 RKKEKNPIFRQISIDI 377 Score = 58.8 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 +L+D E SE K GNIY+ V V ++ AFV++ + GFL H Y Sbjct: 19 LLKDGHPVEFQCVSEKNKVDIGNIYIGVVKNVVKNINGAFVEFDQDEIGFLSMR--HRQY 76 Query: 79 YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138 + + L++ A + + D S + I+N + E++ Sbjct: 77 ----KAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKLSVGISNKIHQKEKKQE 132 Query: 139 ISANND 144 + + Sbjct: 133 LKEMAE 138 >gi|303280908|ref|XP_003059746.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458401|gb|EEH55698.1| predicted protein [Micromonas pusilla CCMP1545] Length = 1060 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 21/339 (6%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + E + E + ++VQ+ + G+KG VT +L GR VL P Sbjct: 524 KEHVEREGRDGSLVGGNRVTEHWRPGMPVVVQVTRLGAGHKGPRVTARPTLPGRNVVLCP 583 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 + +G +SRK+ P + G P +I+RT A TK +++D L Sbjct: 584 D-GEGVYVSRKLMGPARAYV--KAIGGAVAPVDCALIMRTEAAGVTKDVLEKDITSLADD 640 Query: 272 WDNVRELALNSVAPHLVYEEGNLIKRA----------IRDLYCKDISEIIVSGEKGYREA 321 W+ VR A ++VA + +R +RDL+ + I+ + V Y Sbjct: 641 WEEVRTRASSAVAAAGAQGRSPVPRRLLDAATVEQVLVRDLFGERIAALTVDTVAAYDNI 700 Query: 322 KDFMKLLMPSYARIVR--QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR----GYVIINQ 375 ++ S I R + + G+ S + V+L +V+I Sbjct: 701 VADLRRTGTSEENIARVKLHAGSEDVLSVLGVADVAASATEERVSLRDDSLPGAHVVIQA 760 Query: 376 TEALVSIDVNSGR--STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEK 433 TEAL ++DVN+GR + E AL+ N+ AA E+A QLRLRD+ GL++VDFIDM + Sbjct: 761 TEALTAVDVNAGRAAFINDSDNESVALRVNVAAATELAAQLRLRDIGGLVMVDFIDMSSR 820 Query: 434 KNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 + + VE + K DRA+V IS G++E++R+R+ Sbjct: 821 AHRKEVEAAFLRAAKSDRAQVTFLPISPLGVMEVARERL 859 Score = 54.2 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 15 TRVVVLRDNRVEELDFESEHKKQ---IKGNIYLAKVTRVEPSLQAAFVD 60 RV ++ +NR+ EL E G++YL V +V +Q VD Sbjct: 271 VRVGIVEENRLVELWHERAAVPGEGMRVGDVYLGVVAKVISGMQGVLVD 319 >gi|255599060|ref|XP_002537143.1| conserved hypothetical protein [Ricinus communis] gi|223517337|gb|EEF25238.1| conserved hypothetical protein [Ricinus communis] Length = 97 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M+ ++LI+ + +ETRV VL V+EL E + GNIY +V RV P +Q+AFV+ Sbjct: 1 MSEEILINVT-PQETRVAVLEQGVVQELHIERTSSLGLVGNIYKGEVCRVLPGMQSAFVE 59 Query: 61 YGGNRHGFLPFLEI 74 G +R FL ++ Sbjct: 60 VGLSRAAFLHIADL 73 >gi|254462595|ref|ZP_05076011.1| ribonuclease, Rne/Rng family [Rhodobacterales bacterium HTCC2083] gi|206679184|gb|EDZ43671.1| ribonuclease, Rne/Rng family [Rhodobacteraceae bacterium HTCC2083] Length = 340 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 109/305 (35%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 LLVQ+ K V + RY ++ PN G +SR I + R+ + + Sbjct: 74 PGDELLVQVTGYADEGKAIPVQNRVLFKSRYVIVTPNAP-GINVSRSIRDDERREEILAV 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 G+I+R++ +I D ++ L D V + ++ +L+ Sbjct: 133 LHDTVENVPHGIIMRSSCEHADAEDIADDLLSMLGLADQVLNDDGTGGEKLVEGDKPHLL 192 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + F + + Sbjct: 193 ---------------------------------AWRDWVEPAEIITEDGGFETHAVLDAI 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D+L L + + T ALV++DVN+G+ T + N A+ + R+LR Sbjct: 220 DALESPRFELGGGAFAYVEPTRALVAVDVNTGKDTSMT----AGTKANFALAKGLPRELR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G IV+D M KK+ R E LK +L+ D + G +E+ R+R R Sbjct: 276 LRGLGGQIVLDLAPM-PKKDRRGFESALKAALRNDSIETVFVGWTPLGHVELQRKRARLP 334 Query: 476 VLEST 480 ++E Sbjct: 335 LVELL 339 >gi|254475670|ref|ZP_05089056.1| ribonuclease, Rne/Rng family [Ruegeria sp. R11] gi|214029913|gb|EEB70748.1| ribonuclease, Rne/Rng family [Ruegeria sp. R11] Length = 340 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 120/306 (39%), Gaps = 39/306 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K VT L RY+++ P G ISR I + +R L EI Sbjct: 74 PGQELLVQLTGYADTGKALPVTQKLLFKSRYAIVTPEAP-GLNISRSIRDEDERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A G + G+ILR+A +I+ D ++ L D V + + +L+ Sbjct: 133 AHGAMGDSSYGLILRSACDGADAEDIEEDILAMLALADQVLHDEGSGPEVLAEGDTPHLL 192 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A RD E F G+ L Sbjct: 193 --AWRDWTDPADVE-------------------------------REPGGFEHHGVLETL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D + L ++ I T ALV++DVN+G T + N+ A+ +AR LR Sbjct: 220 DQVKTIREPLSGGAFLFIEPTRALVAVDVNTGSDTSLA----AGTKANMACAKGLARALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G IV+D M KK+ R+ E L+ S + D + +N G E+ R+R R Sbjct: 276 LRGLGGQIVIDLAPM-PKKDRRAFESALRASFRTDSEETTLVGWTNLGHFELQRKRGRVP 334 Query: 476 VLESTT 481 + E + Sbjct: 335 LSEVLS 340 >gi|307250034|ref|ZP_07532001.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857932|gb|EFM90021.1| Ribonuclease G [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 219 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGG 63 ++L++ + ETRV ++ + ++EL E E K+ I GNIY +VTRV P +Q+AFVD G Sbjct: 5 ELLVNVT-PSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGL 63 Query: 64 NRHGFLPFLEIHP 76 + FL +I Sbjct: 64 EKAAFLHASDIVS 76 >gi|144897401|emb|CAM74265.1| Ribonucleases G and E [Magnetospirillum gryphiswaldense MSR-1] Length = 435 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 149/393 (37%), Gaps = 34/393 (8%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +LVQ+ + +G KGA +TT + L+GR+ P +S DR+ + + Sbjct: 73 QGASVLVQVKADAQGLKGAVLTTEVVLSGRFIAYTPMRP---GLSVPRKLSDDRRAILQE 129 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 + G++ R + + ++ D L W +++ + AP +++ L Sbjct: 130 RLACMMHDDEGIVARLHAVNADEPALEADLTALRGQWQQMQQGQREARAPAVLWRPDPL- 188 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH--PIFFRSGIEV 353 ++ R D + AR E P+F E Sbjct: 189 ------------DRMLSDHPGVSRVLVDDDLAFAQAQARFGGLVERHRGGPVFDLYDTED 236 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 + + V LP G V T AL +IDV+SG ++ N +A IARQ Sbjct: 237 AVAACLAPVVPLPCGGRVTFQGTAALTAIDVDSG--------PAQPIEANQQAVSVIARQ 288 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR++AG I+VDF+ K + LK+S+ D V + GL+EM+R+R Sbjct: 289 LRLRNIAGQIIVDFVSAGGKGALIKLIAALKQSISSDPTATHVIGATALGLVEMTRERRG 348 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ + + + S + AL LR V + + + DV L Sbjct: 349 PSLSDLMVENVA-------LLSPQAAALRALRLVLAEAAHHPGRALTLTVAPDVAAILHG 401 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 Q + E EAR G + A + Sbjct: 402 QT-GALAEIEARLGRKPMIRAEEGRARDDIAVT 433 Score = 67.7 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 MA+++L + E+R+ ++RD R+ +L + G + L +V + P + A FVD Sbjct: 1 MASEIL-YSWGPGESRLALVRDGRLVDLAVIRPS--LLAGAVVLGRVVELAPKMGAIFVD 57 Query: 61 YGGNRHGFL 69 G ++ GFL Sbjct: 58 IGQDKPGFL 66 >gi|255087102|ref|XP_002505474.1| carbohydrate-binding module family 20 protein [Micromonas sp. RCC299] gi|226520744|gb|ACO66732.1| carbohydrate-binding module family 20 protein [Micromonas sp. RCC299] Length = 1117 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 157/321 (48%), Gaps = 21/321 (6%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 + E + ++VQ+ + G+KG VT +L GR VL P+ +G +SRK+ Sbjct: 666 VVEHWRPGMPVVVQVTRLGSGHKGPRVTARPTLPGRNVVLCPD-GEGVYVSRKLAGQARA 724 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 + VP+ +I+RT A +K ++ D L WD VRE A +V + Sbjct: 725 YV--KAVGATVVPSDCALIMRTEAAGVSKEVLEMDIRSLADDWDVVRERARAAVEAAGLQ 782 Query: 290 EEGNLIKRA----------IRDLYCKDISEIIVSGEKGYREAKDFMKLLM--PSYARIVR 337 +R +RDL+ + I+++ V Y ++ R VR Sbjct: 783 GRSPFPRRLLDAATVEQILVRDLFGERIAKLTVDSMSSYEAIVSDLRRTGATDEIVRRVR 842 Query: 338 QYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR----GYVIINQTEALVSIDVNSGR--STR 391 + P +F G+ ++S V L +V+I QTEAL +IDVN+GR Sbjct: 843 LHTGPENVFAFLGVADAVESTADERVWLKDETLPGAHVVIQQTEALTAIDVNAGRAAFIN 902 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 + E A Q N+ AA+EIA QLRLRD+ GL+++D+IDM ++ + + VE E+ + DR Sbjct: 903 DSDNESVAAQVNVAAAKEIALQLRLRDIGGLVMIDYIDMHDRAHRKEVETAFLEAAQNDR 962 Query: 452 ARVQVGAISNFGLLEMSRQRI 472 A++ IS G++E++R+R+ Sbjct: 963 AQLTFLPISPLGVMEVARERL 983 Score = 57.3 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Query: 4 KMLIDASHVEE--TRVVVLRDNRVEELDFESEHKKQI---KGNIYLAKVTRVEPSLQAAF 58 +++ +A+ EE RV ++ ++R+ EL E + G++YL V +V +Q Sbjct: 345 ELVFNAADKEEHGVRVGIIEEDRLVELWHEHAAEPGKGMRVGDVYLGVVAKVISGMQGVL 404 Query: 59 VDY 61 VD Sbjct: 405 VDV 407 >gi|47097731|ref|ZP_00235231.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 1/2a F6854] gi|47013895|gb|EAL04928.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 1/2a F6854] Length = 315 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 20/333 (6%) Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 V +I+R+ TK ++++ + + + A P L+ + I + Sbjct: 1 MVEENEAIIIRSNAEFATKEQLQQALVQARDKYQTLVKEASKRKKPGLLLSAASGILNST 60 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLH 359 + + + + +F K+L Y + +F GI+ Q+D L Sbjct: 61 KQFIQ------RYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQMDRLA 114 Query: 360 QTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL 419 + V L + + I +TEA+ +DVNSG+ E T NL+A EI RQ+RLR++ Sbjct: 115 RPVVHLSNGSSLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIRLRNM 174 Query: 420 AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES 479 +G+I+VDFI + + L+ +++ QV A+S GLL+++R++ + S LE+ Sbjct: 175 SGMILVDFIGGISEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQSFLET 234 Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL--LNQKRA 537 TT C C G++ S+ ++A + R + ++Q ++I + T DV+ LN Sbjct: 235 TTMPCPVCYATGHVASKETLAFELEREL-SGIMQNEPNSIQIITTEDVLETFLDLNTLSN 293 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 +++E V + + I + Sbjct: 294 APIDWE---------VADERV--PFYQIARVEN 315 >gi|163747241|ref|ZP_02154596.1| ribonuclease G, putative [Oceanibulbus indolifex HEL-45] gi|161379516|gb|EDQ03930.1| ribonuclease G, putative [Oceanibulbus indolifex HEL-45] Length = 344 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 118/305 (38%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT L RY+++ P+ G ISR I + +R L EI Sbjct: 74 PGQTILVQVSGHAEPGKAIPVTNKLLFKSRYAIVTPDAP-GLNISRSIKDEQERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A A +G+ILR++ A +I D +M L D Sbjct: 133 AHEAAGGAELGLILRSSCAGADADDIAEDIANMMALAD---------------------- 170 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + D E+ V E D LL + F G+ +L Sbjct: 171 -----TVANDDAQEMDVLSEG------DGPHLLAWRDWVAPAEIVTEAGSFAEHGVLEEL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L +V L + + + T ALV++DVN+G ++ N+ A + R LR Sbjct: 220 DRLTSAQVPLGNGASIYVEPTRALVAVDVNTGSDASLA----AGVKANMACARVLPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I +D M KK+ R E L+ + + D + + G E+ R+R R Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRIFESALRAAFRADEVDTTLVGWTPLGHYELQRKRARPV 334 Query: 476 VLEST 480 + E Sbjct: 335 LAEVL 339 >gi|167746504|ref|ZP_02418631.1| hypothetical protein ANACAC_01214 [Anaerostipes caccae DSM 14662] gi|167653464|gb|EDR97593.1| hypothetical protein ANACAC_01214 [Anaerostipes caccae DSM 14662] Length = 377 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 170/389 (43%), Gaps = 16/389 (4%) Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 + E I + V+ + G+ + EE + + N + + + + + V Sbjct: 1 MNEVIITRLGRHIVSAWLEDGEFAEFSSEPAEEGSLVGNIYKARVKNIVGNIHGAFVEID 60 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVL 209 E P D +K + +KN + +L+Q+ K+ K T + L G Y VL Sbjct: 61 EGRLCFYPLDERRKPGK-------LKNEEEILIQVKKDGTDKKEPLATENIELTGEYLVL 113 Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 + IS KI + +++LK G I+RT + + +I R+ L Sbjct: 114 SSDKP-FVGISGKIRDKEKKEDLKRFVSAFVTG-EYGFIVRTEAENADQDKIGREAASLA 171 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + +RE L+ + R + L II E ++ Sbjct: 172 ERYVQIREKQQYMKPCRLLATNQSFSSRYVFGLSPSRAERIISDDEVI-------LREAE 224 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 + ++ R I + L+++ T V L S G++II +TEA+ +DVN+G+S Sbjct: 225 ENGYQVRRMDRQDQSIERGYRLSHALEAVFHTRVWLRSGGFLIIERTEAMTVVDVNTGKS 284 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 E ++ N EAA E ARQ+RLR+L+G+I+VDFIDM+EK+ + ++ L + Sbjct: 285 IGRGQKEGHIIKINREAARETARQIRLRNLSGIILVDFIDMKEKEEEGRLLSYMQTMLNR 344 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLE 478 D + ++ GL+E++R++IR + + Sbjct: 345 DSKKAVAVDMTKLGLMEITRKKIRRPLEK 373 Score = 56.5 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 72/253 (28%), Gaps = 17/253 (6%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 L D E E + + GNIY A+V + ++ AFV+ R F P E Sbjct: 16 AWLEDGEFAEFSSEPAEEGSLVGNIYKARVKNIVGNIHGAFVEIDEGRLCFYPLDE---- 71 Query: 78 YYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS----LEEVAPIANFSQET 133 + P L E I + D L P S + Sbjct: 72 -RRKPG----KLKNEEEILIQVKKDGTDKKEPLATENIELTGEYLVLSSDKPFVGISGKI 126 Query: 134 EEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKG 193 ++ VS + G + Q I + VQI ++++ K Sbjct: 127 RDKEKKEDLKRFVSAFVTGEYGFIVRTEAENADQDKIGREAASLAERYVQIREKQQYMKP 186 Query: 194 AA-VTTYLSLAGRYS-VLMPNTSKGETIS--RKITNPVDRKNLKEIARGLEVPAGMGVIL 249 + T S + RY L P+ ++ + + + G L Sbjct: 187 CRLLATNQSFSSRYVFGLSPSRAERIISDDEVILREAEENGYQVRRMDRQDQSIERGYRL 246 Query: 250 RTAGASRTKIEIK 262 A + + Sbjct: 247 SHALEAVFHTRVW 259 >gi|259415610|ref|ZP_05739531.1| ribonuclease, Rne/Rng family [Silicibacter sp. TrichCH4B] gi|259348840|gb|EEW60602.1| ribonuclease, Rne/Rng family [Silicibacter sp. TrichCH4B] Length = 340 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 76/306 (24%), Positives = 122/306 (39%), Gaps = 39/306 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q+LLVQ+ K VT L RY+++ P+ G ISR I + +R L EI Sbjct: 74 PGQMLLVQVTGYAEPGKALPVTQKLLFKSRYAIVTPDAP-GLNISRAIRDEDERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A G+ILR+ A +I D ++ V E Sbjct: 133 AHTEMDGVDFGLILRSVCAGADPEDIAEDIATMVATARQVLEDP---------------- 176 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + SE++ G+ + L Q E F R G+ L Sbjct: 177 ---------SETSEVLHEGDAPH--------LQAWREWTDPAQIEQDPGGFERCGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 DS+ ++++ + ++ + T ALV++DVN+G T ++ N+ A + R LR Sbjct: 220 DSVRTGKISIGAGAFLYVEPTRALVAVDVNTGSDTSLA----AGVKANMACARALPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 L G IV+D M KK+ R+ E L+ + K D + + G E+ R+R R Sbjct: 276 CLGLGGQIVIDAAPM-PKKDRRAFESALRAAFKSDPEETTLVGWTTLGHFELQRKRARLP 334 Query: 476 VLESTT 481 + E + Sbjct: 335 LSEILS 340 >gi|90019168|gb|ABD84237.1| ribonucleases G and E-like [Yersinia sp. MH-1] Length = 160 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 87/160 (54%) Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 +N+G +++T TN+EA + IARQLR+R+L G+I++DFIDM +++ R V L Sbjct: 1 INTGAFVGHRNLDETIFNTNIEATQAIARQLRMRNLGGIIIIDFIDMSNEEHRRRVLHSL 60 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 +++L KDR + + S GL+EM+R+R R S+ C C G G ++S +V I Sbjct: 61 EQALSKDRVKTSINGFSQLGLVEMTRKRTRESIEHVLCNDCPTCHGRGTVKSVETVCYEI 120 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 LR + Y +V+ V L +++ + E E Sbjct: 121 LREIVRVHHAYDTDRFLVYASPAVGEALKSEESHALAEVE 160 >gi|260425264|ref|ZP_05779244.1| ribonuclease, Rne/Rng family [Citreicella sp. SE45] gi|260423204|gb|EEX16454.1| ribonuclease, Rne/Rng family [Citreicella sp. SE45] Length = 338 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 120/305 (39%), Gaps = 41/305 (13%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 LLVQ+ K VTT + RY+++ P G +SR+I + R L I Sbjct: 74 PGDTLLVQVTGFAEPGKAIPVTTRILFKSRYAIVTPGAP-GINVSRQIKDDDLRDELLGI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + G+ILR++ AS +I D + +L V EG+ Sbjct: 133 AHEVMQGED-GLILRSSCASGHPQDIAEDIGAMAQLCAQVMADT---TGGAETLVEGDGP 188 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + D + F R + + Sbjct: 189 HALAWREWDGD-------------------------------DIDSGAGSFERHSVLDMI 217 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++L V LP G + I T ALV++D+N+G T L+ N+ A E+ RQLR Sbjct: 218 EALTSPMVPLPGGGSMCIEPTRALVAVDINTGNDTSPA----AGLKANMAALRELPRQLR 273 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G ++VD KK+ R +E+ L+ + K+D + + GL+E+ R+R R Sbjct: 274 LRGLGGQVLVDPAP-APKKDRRQMEQVLRAAFKQDATETILAGWTQLGLMELQRKRERVP 332 Query: 476 VLEST 480 + E Sbjct: 333 LREVL 337 >gi|254464225|ref|ZP_05077636.1| ribonuclease, Rne/Rng family [Rhodobacterales bacterium Y4I] gi|206685133|gb|EDZ45615.1| ribonuclease, Rne/Rng family [Rhodobacterales bacterium Y4I] Length = 340 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 118/305 (38%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q++LVQ+ K VT L RY+++ P G ISR I + +R L EI Sbjct: 74 PGQMILVQVSGYAEPGKAIPVTQKLLFKSRYAIVTPEAP-GLNISRSIRDEEERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A G G+ILR+A A + EI D + L V + Sbjct: 133 AHEEMGETGYGLILRSACAGADREEIAEDVAAMAALAAQVLQD----------------- 175 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 E D LL E F R G+ L Sbjct: 176 ----------------EGAEAEALSEGDTPHLLAWREWAEPADIERDPGGFERLGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D LP G++ I T ALV++DVN+G T ++ N+ AA+ + R LR Sbjct: 220 DIARGIREPLPGGGFLFIEPTRALVAVDVNTGSDTSLA----AGVKANMAAAKTLPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 +R L G IV+D M KK+ R E L+ + + D + ++ G E+ R+R R + Sbjct: 276 VRGLGGQIVLDLAPM-PKKDRRGFETALRAAFRADSEETVLAGWTSLGHYELQRKRGRIA 334 Query: 476 VLEST 480 + E Sbjct: 335 LSEVL 339 >gi|84683716|ref|ZP_01011619.1| ribonuclease, Rne/Rng family protein [Maritimibacter alkaliphilus HTCC2654] gi|84668459|gb|EAQ14926.1| ribonuclease, Rne/Rng family protein [Rhodobacterales bacterium HTCC2654] Length = 341 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 117/301 (38%), Gaps = 38/301 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 LLVQ+ K V T + RY+++ P+ G +SR++ + +R L +I Sbjct: 77 PGTPLLVQVSGWAEAGKAPPVATKVLFKSRYAIVTPDAP-GLNLSRQVRDEDERVRLLDI 135 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + + G+I+R++ + D + L + V A P L+ + + Sbjct: 136 ADAVMEGSPHGLIVRSSAEGADDGAVAEDIAEMRTLAEAVLGDA-QGKQPELLVDGPDAH 194 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A RD D+ + + F GI L Sbjct: 195 LTAWRDWPEPDV-------------------------------FAEAPGAFEEHGIHDLL 223 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L Y I T ALV++DVN+G T L+ N+ A ++ R LR Sbjct: 224 DRALAARQPLSGGAYAFIEPTRALVAVDVNTGGDTSLA----AGLKANIALARDLPRLLR 279 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 +R L G I +D M KK+ + E+ L+ + K+D + + G E+ R+R R Sbjct: 280 VRGLGGQITLDLAPM-PKKDRAAFEQVLRAAFKRDGTETVLAGWTPLGHFELQRKRDRLP 338 Query: 476 V 476 V Sbjct: 339 V 339 >gi|308811302|ref|XP_003082959.1| putative endoribonuclease E (ISS) [Ostreococcus tauri] gi|116054837|emb|CAL56914.1| putative endoribonuclease E (ISS) [Ostreococcus tauri] Length = 885 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 126/554 (22%), Positives = 219/554 (39%), Gaps = 87/554 (15%) Query: 4 KMLIDASHVEE--TRVVVLRDNRVEELDFESEHKKQI---KGNIYLAKVTRVEPSLQAAF 58 +++ +A++ E+ R+ +L + + EL E + G+IYL V++V +Q Sbjct: 268 ELVFNAANEEDFGVRIAILEEGELVELWHEHGTEPGKGMRVGDIYLGTVSKVISGMQGVL 327 Query: 59 VDY------------GGNRHGFL---------PFLEIHP--------------------- 76 VD G + L + Sbjct: 328 VDLTGKGPPYALMQKGIEKPA-LAWRLKGSASAASDETSRQADNRNEARNGGWWEGNKWK 386 Query: 77 ---DYYQI---PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFS 130 D Q P S + L + A + + + + Sbjct: 387 SDEDATQTEVAPGSANEPLRSYTRRLAAKGAAGGSAWRGAGGRSIRSSTPKSPGESSRWV 446 Query: 131 QETEEESIISANNDVVSNVEDVKGGSPEDVP---------KKFKRQYCIQEVIK---NRQ 178 + T + + DV N E +D +K R+ +E Q Sbjct: 447 RWTPDLTPDECTVDVNGNNESDVQDEGDDDSDGSGGDVVTEKMTRRRLREECYSMWQPGQ 506 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 ++VQ+ + G KG VT +L GR VL P+ +G +SRK+ + + Sbjct: 507 PVVVQVTRLGSGYKGPRVTARPTLPGRNVVLCPD-GEGVYVSRKLMGHARKYV--KDVGL 563 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVR----------ELALNSVAPHLV 288 P G +I+RT A K ++ D L W + + + P + Sbjct: 564 TVCPEGSALIMRTEAAGVNKDTLRLDIGCLADDWSKIVTESEGVVYAANESFTTPHPRRL 623 Query: 289 YEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA--RIVRQYEDPHPIF 346 + + + +RDL+ + +S++ V + Y+ D + S A V +E P +F Sbjct: 624 LQAASREQVLVRDLFGERVSKLTVDTPESYKIIVDDLMRSGASQAIIDRVVLHEAPESVF 683 Query: 347 FRSGIEVQLDSLHQTEVTL----PSRGYVIINQTEALVSIDVNSGRSTREH--CIEDTAL 400 G++ ++S+ TE S +++I TEAL +IDVN+GR+ E E AL Sbjct: 684 ESLGVDADIESMVGTERVFLGPELSGAHIVIQHTEALTAIDVNAGRTAMEAGEDGEAIAL 743 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 + N+ AA +AR LRLRD+ GL++VD IDM R VEK + + +DRA+V IS Sbjct: 744 RVNMAAAALVARVLRLRDIGGLVMVDLIDMHADDARREVEKAFQAAAARDRAQVVFVPIS 803 Query: 461 NFGLLEMSRQRIRS 474 G++E++R+R+++ Sbjct: 804 ALGVMEIARERLQT 817 >gi|255264386|ref|ZP_05343728.1| ribonuclease, Rne/Rng family [Thalassiobium sp. R2A62] gi|255106721|gb|EET49395.1| ribonuclease, Rne/Rng family [Thalassiobium sp. R2A62] Length = 344 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 40/308 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT + RY+++ P G +SR I + R L + Sbjct: 76 PGQPILVQVTGYADEGKAVPVTHKVLFKSRYAIVTPGAP-GVNVSRSIRDDDARDTLLAV 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + G+ILR++ EI D E ++ + D+V A A L +G Sbjct: 135 AHSV-FDGDHGLILRSSCDGADAEEIAEDIEAMLAIADHVIAQAEGPNAEMLNEGDGP-- 191 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + F G+ QL Sbjct: 192 ------------------------------HVTAWREWTDQSDVMTDAGGFESHGVLDQL 221 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + +V L S G + I T AL+++DVN+G T L+ N+ A + RQLR Sbjct: 222 PAFFDPKVRLTS-GDMYIEPTRALIAVDVNTGGDTSVA----AGLKVNMSVARALPRQLR 276 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I +D M K + + E L+ + + DR + + G E+ R+R R Sbjct: 277 LRGLGGQITLDLAPMT-KNDRKQFETTLRAAFRADRIETALVGWTPLGHYELQRKRERLP 335 Query: 476 VLESTTKV 483 + + ++ Sbjct: 336 LSDLVSED 343 >gi|114767233|ref|ZP_01446098.1| ribonuclease, Rne/Rng family protein [Pelagibaca bermudensis HTCC2601] gi|114540643|gb|EAU43714.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. HTCC2601] Length = 283 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 123/306 (40%), Gaps = 41/306 (13%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 LLVQ+ K VTT L RY+++ P G +SR+I + R L + Sbjct: 19 PGDALLVQVTGFAEPGKAIPVTTRLLFKSRYAIVTPGAP-GLNVSRQIKDDDLRDTLLGV 77 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + G+ILR++ A+ +I D +++L V A + + + + Sbjct: 78 AHEVMEG-DHGLILRSSCATGDPDDIAEDIAAMVQLAAQVMADASGEPETLVEGDGPHAL 136 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 D D F R + L Sbjct: 137 AWREWDSDDVD----------------------------------GKPGSFERHNVLDAL 162 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + L V LP G + I T ALV+ID+N+G T L+ N+ A E+ RQLR Sbjct: 163 EDLRSPMVALPGGGSMYIEPTRALVAIDINTGNDTSPA----AGLKANMAALRELPRQLR 218 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I+VD KK+ R +E+ L+ +LK+D + + GL+E+ R+R R Sbjct: 219 LRGLGGQILVDPAP-APKKDRRQMEQVLRAALKQDATETILAGWTQLGLMELQRKRERMP 277 Query: 476 VLESTT 481 + E + Sbjct: 278 LREVLS 283 >gi|254512732|ref|ZP_05124798.1| ribonuclease, Rne/Rng family [Rhodobacteraceae bacterium KLH11] gi|221532731|gb|EEE35726.1| ribonuclease, Rne/Rng family [Rhodobacteraceae bacterium KLH11] Length = 340 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 111/305 (36%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +LLVQ+ K VT + RY+++ P+ G ISR+I + R L EI Sbjct: 74 PGALLLVQVTGYAEPGKAIPVTNRILFKSRYAIVTPDAP-GLNISRRIRDEDTRDQLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A L + G+ILR+ +I D ++ L D V L + I Sbjct: 133 AHDLMGDSAHGLILRSCCQGAEPDDIAEDISAMLALADQVLHDPGTEPEL-LSEGDTPHI 191 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + F G+ L Sbjct: 192 L--------------------------------AWRDWTDPAEVVTSSGGFEAHGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++ LP G++ I T ALV++DVN+G T + N A+ + R LR Sbjct: 220 ETARSKSEPLPGGGHLYIEPTRALVAVDVNTGADTSLA----AGTKANFACAKTLPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 +R L G I +D M KK+ R E L+ +LK D + + G E+ R+R R Sbjct: 276 VRGLGGQITLDLAPM-PKKDRRGFESALRAALKSDPEETILAGWTPLGHFELQRKRGRIP 334 Query: 476 VLEST 480 + E Sbjct: 335 LAEIL 339 >gi|149203437|ref|ZP_01880407.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035] gi|149143270|gb|EDM31309.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. TM1035] Length = 341 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 38/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K VTT L RY+++ P+ G +SR I + R +L EI Sbjct: 74 PGQPLLVQVTGHAEPGKALPVTTRLLFKSRYAIVTPDAP-GLNVSRSIKDETLRDSLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + MG+ILR++ S +I D + +L Sbjct: 133 AHAEMGDSPMGLILRSSCESAEAADIAEDVNAMR-----------------------DLA 169 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + D + + +D+++ F +G+ QL Sbjct: 170 EAVLADATGPEPETLTEGDGPHTLAWRDWVE---------PADVLTDPGSFAENGVLDQL 220 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D+L + V LP I T ALV++DVN+G L+ N+ A ++ RQLR Sbjct: 221 DALREALVPLPGGASFYIEPTRALVAVDVNTGGDASLA----AGLKANIAMARDLPRQLR 276 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I +D M KK+ R+ E L+ +L++D + + G E+ R+R R Sbjct: 277 LRGLGGQITLDLAPM-PKKDRRTFEASLRAALRQDTTETTLAGWTPLGHFELQRKRDRQP 335 Query: 476 VLEST 480 + + Sbjct: 336 LTDLL 340 >gi|163737329|ref|ZP_02144747.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis BS107] gi|161389933|gb|EDQ14284.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis BS107] Length = 340 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 82/305 (26%), Positives = 123/305 (40%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K V+ L RY+++ P G ISR I + +R L EI Sbjct: 74 PGQELLVQLTGYAEAGKALPVSQKLLFKSRYAIITPEAP-GLNISRSIRDEEERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A +G G+ILR+A +I+ D ++ L V E A + + +L+ Sbjct: 133 AHDAIGDSGYGLILRSACDGADSTDIEEDILAMVSLASQVLEDAGSGPEVLAEGDTPHLL 192 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A RD E F R G+ L Sbjct: 193 --AWRDWTDPADIE-------------------------------REAGGFERLGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 +++ L ++ I QT ALV++DVN+G T ++ N+ A+ +AR LR Sbjct: 220 ETVRGIREPLSGGAFLFIEQTRALVAVDVNTGADTSLA----AGVKANMACAKSLARALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G IVVD M KK+ R+ E L+ S + D + + G E+ R+R R Sbjct: 276 LRGLGGQIVVDPAPM-PKKDRRAFETALRASFRSDSEDTVLVGWTTLGHFELQRKRGRIP 334 Query: 476 VLEST 480 + E Sbjct: 335 LKEVL 339 >gi|145356965|ref|XP_001422693.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582936|gb|ABP01010.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 312 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 21/314 (6%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 Q ++VQ+ + G KG VT +L GR VL P+ +G +SRK+ + + Sbjct: 1 GQPVVVQVTRLGSGYKGPRVTARPTLPGRNVVLCPD-GEGVYVSRKLMG--RARKYVKDV 57 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH---------- 286 P G +I+RT A + +K D L WD + E + ++ Sbjct: 58 GATVCPKGSALIMRTEAAGVNQDTLKLDIGCLAEDWDTIVEESERAIRHAELTLRPPPPR 117 Query: 287 LVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL--MPSYARIVRQYEDPHP 344 + + + + +RDL+ + ++++ V E+ Y+ D + V ++ P Sbjct: 118 RLLQAASREQVLVRDLFGERVAKLTVDTEESYKTIVDDLLRTGASQEIINRVVLHQGAEP 177 Query: 345 IFFRSGIEVQLDSLHQTEVTLP----SRGYVIINQTEALVSIDVNSGRSTREH--CIEDT 398 +F ++ ++++ TE S +++I TEAL +IDVN+GR+ E+ Sbjct: 178 VFKALEVDKVIETMMGTERIFLGPELSGAHIVIQHTEALTAIDVNAGRTAMGAGEDGEEV 237 Query: 399 ALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 AL+ N+ AAE +AR LRLRD+ GL+++D IDM ++VE + +DRA+V Sbjct: 238 ALRVNIAAAELVARTLRLRDIGGLVMLDLIDMHTDDARKAVETAFEAIASRDRAQVVFVP 297 Query: 459 ISNFGLLEMSRQRI 472 IS G++E++R+R+ Sbjct: 298 ISALGVMEVARERL 311 >gi|257466299|ref|ZP_05630610.1| putative ribonuclease [Fusobacterium gonidiaformans ATCC 25563] gi|315917456|ref|ZP_07913696.1| cytoplasmic axial filament protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691331|gb|EFS28166.1| cytoplasmic axial filament protein [Fusobacterium gonidiaformans ATCC 25563] Length = 425 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 98/391 (25%), Positives = 170/391 (43%), Gaps = 19/391 (4%) Query: 130 SQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEER 189 E + I + V + K + + E N Q +VQ+++EER Sbjct: 20 DNELWDLRIEEKDKIVRNGFYLAKKEKEHFLLLSSGEKVFCSEAFPNGQEKIVQVLQEER 79 Query: 190 GNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVIL 249 K A V+ L + Y V P KG +S+K+ +RK L+EI + E ++ Sbjct: 80 EEKLAQVSQKLEMTNPYFVFFP-YGKGIFLSKKMEEEQERKRLREIFQKYEEK--GSFLI 136 Query: 250 RTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISE 309 RT + ++++ + +++ W V+E A + + I+ + + +D Sbjct: 137 RTEAKGMLERNLEQEIQQVLKEWQLVQERAFHLKKKGNLRSTVVWIEEILEEYGKQDWKT 196 Query: 310 IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369 E K+ +K + Y + VR+Y ++ + +E Q+ L Q ++ L S G Sbjct: 197 CYCEN----FELKETLKEKLTFYQKQVREYHGEISLWKQRKLEEQIRVLCQEKIDLASGG 252 Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429 Y+ I T A V+IDVNSG + N+EAA EI RQ++LR+LAG IV+DFI+ Sbjct: 253 YLWIESTRACVTIDVNSGAGSPRRS--------NIEAAREIPRQVKLRNLAGNIVIDFIN 304 Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489 + + + + LKE +D +Q G +F L SRQR + ++ + Sbjct: 305 CKNVEEKKEIVSILKEGFSRDHHFIQWGNFHDFDLFLFSRQRKGKELSFYYSEESLF--- 361 Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 ++ +L E+ LL NI+ Sbjct: 362 -YQVQCLEEECNDLLEQKEKILLIEGEKNIL 391 >gi|218670376|ref|ZP_03520047.1| probable ribonuclease protein [Rhizobium etli GR56] Length = 281 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 175/266 (65%), Positives = 208/266 (78%), Gaps = 2/266 (0%) Query: 116 NDHSLEEVAPIANFSQETEEESIISANNDVVSNV--EDVKGGSPEDVPKKFKRQYCIQEV 173 S+ E + + +++ +V+ +V ED P+ V +K ++QY IQEV Sbjct: 14 ETDSISEDVDTSKRRHDDDDDDDDHGEEEVIESVGAEDAMEEVPDRVQRKPRKQYRIQEV 73 Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 IK RQILLVQ+ KEERGNKGAA+TTYLSLAGRYSVLMPNT++G ISRKITNP DRK LK Sbjct: 74 IKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADRKRLK 133 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 EIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+NVR L L S AP LVYEEG+ Sbjct: 134 EIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVYEEGS 193 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LMPS+A++V+ Y D HPIF RSGIE Sbjct: 194 LIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEA 253 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEAL 379 QLD + Q +VTL S GY+I+NQTEAL Sbjct: 254 QLDRMLQPQVTLRSGGYLIMNQTEAL 279 >gi|126738149|ref|ZP_01753870.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6] gi|126720646|gb|EBA17351.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. SK209-2-6] Length = 340 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 118/306 (38%), Gaps = 39/306 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q+LLVQ+ K VT L RY++ P G ISR I + +R L EI Sbjct: 74 PGQMLLVQVTGYAEPGKAIPVTQKLLFKSRYAIATPGAP-GLNISRSIRDEDERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A A +ILR+A + +I D + L + + ++ E Sbjct: 133 AHECLGDAEQSMILRSACSGAPSEDIAEDIAAMANLAAEIMSDEIGEPE--VLTEGDGPH 190 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 RA RD E F R+G+ L Sbjct: 191 LRAWRDWVEPAAIE-------------------------------QEPGGFERNGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D + L ++ + T ALV++DVN+G+ T L+ NL A + R LR Sbjct: 220 DIALSSREPLSGGAFIFVEPTRALVAVDVNTGKDTSLA----AGLKANLACARALPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 R LAG IV+D M KK RS E L+ +LK + + +N G E+ R+R R Sbjct: 276 NRGLAGQIVIDLAPM-PKKERRSFESALRGALKAEGDDTVMLGWTNLGHFELQRKRSRIP 334 Query: 476 VLESTT 481 + E + Sbjct: 335 LTEVLS 340 >gi|83943982|ref|ZP_00956439.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36] gi|83845229|gb|EAP83109.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. EE-36] Length = 340 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 118/305 (38%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT L RY+++ P G ISR I + +R L EI Sbjct: 74 PGQPILVQVSGYAEPGKAVPVTQKLLFKSRYAIVTPGAP-GTNISRSIRDEEERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A A G+ILR++ A +I D + ++ L D Sbjct: 133 AHEASDGAAHGLILRSSCAGADADDIADDIDAMLALADK--------------------- 171 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + D D+ + +D+++ F G+ + Sbjct: 172 ---VLDDPSTDMEVLSEGDGPHILAWRDWVE---------PADVVTDPGGFETHGVLDTV 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 DSL Q V L ++ + T ALV++DVN+G ++ N+ A + R LR Sbjct: 220 DSLSQPRVALDGGAFMFVEPTRALVAVDVNTGADVSLA----AGIKANMACARALPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I +D M KK+ R E L+++ + D + + G E+ R+R R Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRPFETALRQAFRADDVETTLVGWTPLGHYELQRKRARMP 334 Query: 476 VLEST 480 + E Sbjct: 335 LAEVL 339 >gi|254487506|ref|ZP_05100711.1| ribonuclease G, putative [Roseobacter sp. GAI101] gi|214044375|gb|EEB85013.1| ribonuclease G, putative [Roseobacter sp. GAI101] Length = 340 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 114/305 (37%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT + RY+++ P G ISR I + +R L EI Sbjct: 74 PGQPILVQVSGYAEPGKAVPVTQKILFKSRYAIVTPGAP-GTNISRSIRDEEERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A A G+ILR++ A +I D + ++ L D V + ++ E Sbjct: 133 AHEAAQGASHGLILRSSCAGADGDDIADDIDAMLTLADKVLG--DTATEMEVLSEGDGPH 190 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A RD + F + + Sbjct: 191 ILAWRDWVD-------------------------------PAEVVTEPGSFETHAVLDAI 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L Q V L + + T ALV++DVN+G ++ N+ A + R LR Sbjct: 220 DGLRQPRVELDGGASMFVEPTRALVAVDVNTGADVSLA----AGIKANMSCARALPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I +D M KK+ R E L+++ + D + + G EM R+R R Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRPFETALRQAFRADDVETTLIGWTPLGHYEMQRKRARMP 334 Query: 476 VLEST 480 + E Sbjct: 335 MSEVL 339 >gi|86137057|ref|ZP_01055635.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193] gi|85826381|gb|EAQ46578.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. MED193] Length = 340 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 116/305 (38%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q+LLVQ+ K VT L RY++ P G ISR I + +R L EI Sbjct: 74 PGQMLLVQVTGYAEPGKAIPVTQKLLFKSRYAIATPGAP-GVNISRSIRDDDERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A G A G+ILR+A A E+ D E + +L Sbjct: 133 AHGALEGASYGMILRSACAGADGDEVAEDIEAMA-----------------------DLA 169 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + D + D L + F G+ L Sbjct: 170 AQVLADAEG----------DMDVLTEGDGPHLRAWREWSDPAEVFRDAGDFEHHGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 DS L ++ I T ALV++DVN+G T + N+ A+ + R LR Sbjct: 220 DSALTIREPLTGGAHLFIEATRALVAVDVNTGSDTSFA----AGTKANIACAKLLPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR LAG IV+D M KK+ + E L+ +L+ D + +N G E+ R+R R Sbjct: 276 LRGLAGQIVIDVAPM-PKKDRSTFESTLRAALRADSEETTMLGWTNLGNFELQRKRSRVV 334 Query: 476 VLEST 480 + E Sbjct: 335 LAELL 339 >gi|110678990|ref|YP_681997.1| ribonuclease G, putative [Roseobacter denitrificans OCh 114] gi|109455106|gb|ABG31311.1| ribonuclease G, putative [Roseobacter denitrificans OCh 114] Length = 340 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 112/305 (36%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K V L RY ++ P+ G ISR I + +R L EI Sbjct: 74 PGQAVLVQVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAP-GLNISRSIRDEAERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A +G G+ILR++ + + +I +D + +M L +V Sbjct: 133 AHEGAGGSGYGLILRSSCENADEEDIAQDIDTMMALASDVLND----------------- 175 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 G+ D LL + F G+ L Sbjct: 176 ----------------AGGDMAVLATGDGPHLLAWRDWVNPGEVVTQAGSFETHGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L I T AL+++DVN+GR T L NL A + R LR Sbjct: 220 DRDLGVLQPLDGGASFYIEPTRALIAVDVNTGRDTSLA----AGLNANLACARMLPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 ++ L G IV+D M KK+ R E L+++ K + + G E+ R+R R Sbjct: 276 VKGLGGQIVLDLAPM-PKKDRRRFETALRQAFKSCSVETALVGWTPLGHYELQRKRARVP 334 Query: 476 VLEST 480 + E Sbjct: 335 LHEVL 339 >gi|256091572|ref|XP_002581640.1| Ribonuclease G [Schistosoma mansoni] gi|238667742|emb|CAZ37881.1| Ribonuclease G, putative [Schistosoma mansoni] Length = 271 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 LI+ + E+RV ++ + V+EL E ++ + GNIY +V RV P +QAAFV+ G +R Sbjct: 2 LINVT-PMESRVALVENGIVQELYVERTARRGLVGNIYRGRVVRVLPGMQAAFVEIGLSR 60 Query: 66 HGFLPFLEI 74 F+ E+ Sbjct: 61 TAFIHLNEV 69 >gi|257452429|ref|ZP_05617728.1| putative ribonuclease [Fusobacterium sp. 3_1_5R] gi|317058972|ref|ZP_07923457.1| ribonuclease G [Fusobacterium sp. 3_1_5R] gi|313684648|gb|EFS21483.1| ribonuclease G [Fusobacterium sp. 3_1_5R] Length = 425 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 171/391 (43%), Gaps = 19/391 (4%) Query: 130 SQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEER 189 E + I + V + K + + E N Q +VQ+++EER Sbjct: 20 DNELWDLRIEEKDKIVRNGFYLAKKEKEHFLLLSSGEKVFCSEAFPNGQEKIVQVLQEER 79 Query: 190 GNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVIL 249 K A V+ L + Y V P KG +S+K+ +RK L+EI + E ++ Sbjct: 80 EEKLAQVSQKLEMTNPYFVFFP-YGKGIFLSKKMEEEQERKRLREIFQKYEEK--GSFLI 136 Query: 250 RTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISE 309 RT + ++++ + +++ W V+E A + + ++ + + +D Sbjct: 137 RTEAKGMLERNLEQEIQQVLKEWQLVQERAFHLKKKGNLRSTVVWMEEILEEYGKQDWKT 196 Query: 310 IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369 E K+ +K + Y + VR+Y ++ + +E Q+ L Q ++ L S G Sbjct: 197 CYCEN----FELKETLKEKLTFYQKQVREYHGEISLWKQRKLEEQIRVLCQEKIDLASGG 252 Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429 Y+ I T A V+IDVNSG + N+EAA EI RQ++LR+LAG IV+DFI+ Sbjct: 253 YLWIESTRACVTIDVNSGAGSPRRS--------NIEAAREIPRQVKLRNLAGNIVIDFIN 304 Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489 + + + + LKE +D+ +Q G +F L SRQR + ++ + Sbjct: 305 CKNVEEKKEIVSILKEGFLRDQHFIQWGNFHDFDLFLFSRQRKGKELSFYYSEESLF--- 361 Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 ++ +L E+ LL NI+ Sbjct: 362 -YQVQCLEEECNDLLEQKEKILLIEGEKNIL 391 >gi|56708868|ref|YP_164910.1| ribonuclease [Ruegeria pomeroyi DSS-3] gi|56680553|gb|AAV97218.1| ribonuclease, Rne/Rng family [Ruegeria pomeroyi DSS-3] Length = 340 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 114/306 (37%), Gaps = 39/306 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 LLVQ+ K VT L RY+++ P G +SR I + +R L EI Sbjct: 74 PGAHLLVQVTGYAEPGKAIPVTAKLLFKSRYAIVTPGAP-GLNLSRNIRDEAERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A G G+ILR++ A I D ++ Sbjct: 133 AHEEMEGHGFGLILRSSCAEVEGEVIAEDIAAMIAQAQQ--------------------- 171 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + KD +I +D+ + F G+ L Sbjct: 172 ---VLEDDGKDCETLIEGDGPHVLAWRDWT---------DPAEVVTAAGGFEDHGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + + LP G++ I T ALV++DVN+G T + N A+ + R LR Sbjct: 220 ERVRGIAEPLPGGGHLYIQPTRALVAVDVNTGSDTSLA----AGQKANFACAKLLPRVLR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 +R L G I +D M KK+ R E L+ +LK D + + G E+ R+R R Sbjct: 276 IRGLGGQITLDLAPM-AKKDRRGFEAALRAALKADSEETTLAGWTPLGHYELQRKRGRVP 334 Query: 476 VLESTT 481 V E+ + Sbjct: 335 VAEALS 340 >gi|83954556|ref|ZP_00963267.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1] gi|83840840|gb|EAP80011.1| ribonuclease, Rne/Rng family protein [Sulfitobacter sp. NAS-14.1] Length = 340 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 118/305 (38%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT L RY+++ P G ISR I + +R L EI Sbjct: 74 PGQPILVQVSGYAEPGKAVPVTQKLLFKSRYAIVTPGAP-GTNISRSIRDEEERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A A G+ILR++ A +I D + ++ L D Sbjct: 133 AHEASDGAAHGLILRSSCAGADADDITDDIDAMLALADK--------------------- 171 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + D D+ + +D+++ F G+ + Sbjct: 172 ---VLDDPSTDMEVLSEGDGPHILAWRDWVE---------PADVVTDPGGFETHGVLDTV 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 DSL Q V L ++ + T ALV++DVN+G ++ N+ A + R LR Sbjct: 220 DSLSQPRVALDGGAFLFVEPTRALVAVDVNTGADVSLA----AGIKANMACARALPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I +D M KK+ R E L+++ + D + + G E+ R+R R Sbjct: 276 LRGLGGQITLDLAPM-PKKDRRPFETALRQAFRADDVETTLVGWTPLGHYELQRKRARMP 334 Query: 476 VLEST 480 + E Sbjct: 335 LAEVL 339 >gi|163741999|ref|ZP_02149388.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis 2.10] gi|161384720|gb|EDQ09100.1| ribonuclease, Rne/Rng family protein [Phaeobacter gallaeciensis 2.10] Length = 340 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 79/305 (25%), Positives = 121/305 (39%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K V+ L RY+++ P G ISR I + +R L EI Sbjct: 74 PGQELLVQLTGYAEAGKALPVSQKLLFKSRYAIITPEAP-GLNISRSIRDEDERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A G+ILR+A +I+ D ++ L V E A + + +L+ Sbjct: 133 AHDAMGGIAYGLILRSACDGADSADIEEDILAMVSLASQVLEDAGSGPEVLAEGDTPHLL 192 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A RD E F R G+ L Sbjct: 193 --AWRDWTDPADIE-------------------------------RDAGGFERLGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 +++ L ++ I +T ALV++DVN+G T ++ N+ A+ +AR LR Sbjct: 220 ETVQGIREPLSGGVFLFIEETRALVAVDVNTGADTSLA----AGVKANMACAKSLARALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G IV+D M KK+ R+ E L+ S + D + + G E+ R+R R Sbjct: 276 LRGLGGQIVIDPAPM-PKKDRRAFETALRASFRSDSEDTVLVGWTTLGHFELQRKRGRIP 334 Query: 476 VLEST 480 + E Sbjct: 335 LKEVL 339 >gi|85704672|ref|ZP_01035774.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217] gi|85671080|gb|EAQ25939.1| ribonuclease, Rne/Rng family protein [Roseovarius sp. 217] Length = 341 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 120/305 (39%), Gaps = 38/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K VT+ + RY+++ P+ G ISR I + R +L EI Sbjct: 74 PGQPLLVQVTGYAELGKALPVTSTILFKSRYAIVTPDAP-GLNISRSIKDEDLRDSLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + MG+ILR++ + +I D + L + V A S L +G Sbjct: 133 AHAEMGQSAMGLILRSSCDTAEASDIAEDIRAMCELAEAVLADATGSEPETLTEGDGPHT 192 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 F SG+ Q+ Sbjct: 193 L--------------------------------AWRDWVAPSDVMTTPGSFATSGVLDQI 220 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 +L ++V LP G I T ALV++DVN+G L+ N+ A ++ RQLR Sbjct: 221 GALSDSQVPLPGGGSYYIEPTRALVAVDVNTGGDASLA----AGLKANIAVARDLPRQLR 276 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G I +D M KK+ R+ E L+ + ++D + + G E+ R+R R Sbjct: 277 LRGLGGQITLDLAPM-PKKDRRTFESVLRATFRQDATETALVGWTPLGHFELQRKRDRLP 335 Query: 476 VLEST 480 + + Sbjct: 336 LTDLF 340 >gi|254450815|ref|ZP_05064252.1| ribonuclease G, putative [Octadecabacter antarcticus 238] gi|198265221|gb|EDY89491.1| ribonuclease G, putative [Octadecabacter antarcticus 238] Length = 342 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 117/301 (38%), Gaps = 39/301 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT + RY+++ P G +SR+I R+ L Sbjct: 76 PGQAILVQVTGYADDGKAIPVTDRVLFKSRYAIVTPGKP-GINVSRQIKEDDVRERLLAC 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A V G G+ILR++ + ++ +I D + L + Sbjct: 135 AHDAGVSDGFGLILRSSCEAASEEDIGEDIAAMDALAAAIMADT---------------- 178 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 D + ++E +RE + + F G+ Q+ Sbjct: 179 -----DGVAEMLTEGDGPHGLAWREWVEAAQ------------VVTDDGGFEDHGVLDQI 221 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++ V L + ++ + T AL+++DVN+G T L+ NL A + + R LR Sbjct: 222 AAIASPRVALEASAFMYVEPTHALIAVDVNTGGDTSPASS----LKANLAACKVLPRALR 277 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G IV+D M K + VE ++ + + D + + G E+ R+R R Sbjct: 278 LRGLGGQIVIDMAPM-PKTMRKQVEAAMRSAFRADSIDTALVGWTPLGHFELQRKRERLP 336 Query: 476 V 476 + Sbjct: 337 I 337 >gi|114769474|ref|ZP_01447100.1| hypothetical protein OM2255_07070 [alpha proteobacterium HTCC2255] gi|114550391|gb|EAU53272.1| hypothetical protein OM2255_07070 [alpha proteobacterium HTCC2255] Length = 349 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 76/310 (24%), Positives = 116/310 (37%), Gaps = 39/310 (12%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + VQ+ K V L RY ++ P+ G I+R I + +R L E Sbjct: 77 PQGTQMTVQVATHAETGKATPVVNKLIFKSRYCIVTPDAP-GLNIARSIKDDEERDRLLE 135 Query: 235 IARGL--EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 I + G+I+R++ I D + L DNV S P L+ Sbjct: 136 IVHEVSTNRSNEYGLIIRSSAMDIDADAISGDINAMYDLADNVMSQ--TSGDPALIMPAP 193 Query: 293 NLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIE 352 +A RD D E+I F GI Sbjct: 194 TAEMKAWRDWVNPDPDEVIK-----------------------------EINSFETMGIW 224 Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 ++ L ++ LP+ +II T A V++DVN+G L+ NL A+E+ Sbjct: 225 DHIEKLKHSKSKLPNGASMIIEPTSAFVAVDVNTGNDFS----LSAGLKANLAVAKELPN 280 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 QL LR L G I++DF KK+ + +E L S +K + V + G E+ R+R Sbjct: 281 QLSLRGLGGQIIIDFAP-SPKKDRKLIETALNSSFRKGKIDTVVVGWTTLGNFELQRKRE 339 Query: 473 RSSVLESTTK 482 R + E Sbjct: 340 RIPLSELLQD 349 >gi|289424022|ref|ZP_06425811.1| ribonuclease G [Peptostreptococcus anaerobius 653-L] gi|289155597|gb|EFD04273.1| ribonuclease G [Peptostreptococcus anaerobius 653-L] Length = 460 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 155/393 (39%), Gaps = 25/393 (6%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K +LVQ+ K ++ NK ++ +SL GR V + K + + Sbjct: 76 KVGDRVLVQVKKSDKENKRLSLDLEISLTGRGLVYIGGLKKPVFSKSIKDSSQRSRIR-- 133 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + ++RT ++ ++ L R + +V + + L+ ++ Sbjct: 134 -----SILPSPEYLVRTRAQYMLDQDLIKEAGILERDYQDVLDSFKKNRRIGLLRPAQSI 188 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIV-----------RQYEDPH 343 + I D D E + ++ R + Sbjct: 189 VLEYIGDNIGVDQDEGSSDEIDRIVYSVYGIEEDFNKDLRAYLKTVSSDLLLKLDKKKNT 248 Query: 344 PIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTN 403 IF GI ++ L V Y+II++TEAL IDVN+G E T N Sbjct: 249 DIFEAYGINTRIGRLLSKRVDTKQGPYIIIDRTEALNIIDVNTGGFVGYSDYETTVTMAN 308 Query: 404 LEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFG 463 AA+EI RQ+ +RDL+G+I+VDFIDM++K S+ + + L +D + +V + G Sbjct: 309 KIAAKEIVRQILMRDLSGIILVDFIDMKDKSARDSLIDIINQGLSEDERKFKVHGYTRLG 368 Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 LLE+SR R S+L+ + I+S SV I R V+ + ++I + Sbjct: 369 LLEISRSRKSKSILDYYEDIDPKNLSR--IKSLDSVIDEIERRVQIEVYHKQNYDIKLCD 426 Query: 524 HSDVVLYLLNQK-----RATIVEYEARFGVSIN 551 + ++ + I + E R+ +I Sbjct: 427 ILYEYRLVEIEEIFKSCQGMIKKMEVRYNANIE 459 Score = 67.3 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69 V+ D + +L E +IY +V RV P ++A FVD G + G+L Sbjct: 16 AVMDDGDLVDLVIEKNDASVRIKDIYAGRVERVLPGMEACFVDIGSDISGYL 67 >gi|83594099|ref|YP_427851.1| ribonuclease G (RNase G) [Rhodospirillum rubrum ATCC 11170] gi|83577013|gb|ABC23564.1| ribonuclease G (RNase G) [Rhodospirillum rubrum ATCC 11170] Length = 460 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 144/377 (38%), Gaps = 17/377 (4%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 +L Q+++E KG VT +LAGR V P R + K L+ Sbjct: 85 EGALLAFQVLREAVAGKGPTVTAAPTLAGRLLVYTPYVPGVGLSPRAGSTAAR-KALRAR 143 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 L P G GV+ RT ++ ++ + ++ W + S P L+ + Sbjct: 144 ITALLDP-GEGVVARTIAGEASEAALRAELDHHRARWRAIGRALAASTRPGLLEAAPGPL 202 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + D + ++ + + + + P + V P+F R G+E L Sbjct: 203 GGWL-DSLGDALRSVVADQGERAQALRRALAARGPDWPARVVIERADQPLFERWGVEEAL 261 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++ + LP G + I +T AL +IDV++G + R AA EIARQ+R Sbjct: 262 EAALAVRLALPGGGAIAIEETAALTAIDVDAGGADRR--------LVAPVAAREIARQIR 313 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR LAG I++DF L E+L D A +V ++ GL+E+ R R R Sbjct: 314 LRALAGQILIDFPRGARGPEESG-LVALIEALAADPAGPRVLGVTRGGLVEVVRPRRRPP 372 Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 + T G + + L+ LR + + + L Sbjct: 373 LSSLLTVP-----GGPPKLTAETALLAALRELVAGATRAPGARPHLRVGPRSGGLLATDL 427 Query: 536 RATIVEYEARFGVSINV 552 + E EA G ++ + Sbjct: 428 AQALAEVEAALGQAVAI 444 Score = 52.3 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 12 VEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFL 69 ETR +L + E+ F+ H + G I +VT P QA FVD G GFL Sbjct: 17 PGETRWALLAGDTPVEVVFQRAHAVET-GAIVAGRVTAAVPGHQALFVDLGRGPAGFL 73 >gi|153814866|ref|ZP_01967534.1| hypothetical protein RUMTOR_01081 [Ruminococcus torques ATCC 27756] gi|145847897|gb|EDK24815.1| hypothetical protein RUMTOR_01081 [Ruminococcus torques ATCC 27756] Length = 252 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 126/240 (52%), Gaps = 1/240 (0%) Query: 240 EVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAI 299 G+I+RT E++ + E L + + AL+ VA + + Sbjct: 1 MKNEQFGIIIRTNAKGVPFQEVEDEIERLKEEYKKLLNTALSRVAFSRLKSAPPTYISDL 60 Query: 300 RDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVR-QYEDPHPIFFRSGIEVQLDSL 358 +++Y + + EI++ G+ Y E +++ P +++R P+ E L+ Sbjct: 61 KNVYMEGMEEIVIEGKDLYTEIQEYFLTEFPEKVKLLRLYENPDFPLCKLYSTETALEKA 120 Query: 359 HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRD 418 + V L + GY+II TEAL IDVNSG+ + A++ N+EAA+E A+Q+RLR+ Sbjct: 121 LKEFVWLKNGGYLIIQPTEALTVIDVNSGKMAVKSKNSAGAMKVNMEAAQEAAKQIRLRN 180 Query: 419 LAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 L+G+I+VDF+++E K++ + K+ + L KD + ++ GL+E++R+++R + E Sbjct: 181 LSGIIIVDFVNLESKEDTGILLKEFRNFLSKDPIPTTLVDMTMLGLVEITRKKVRKPLYE 240 >gi|126463036|ref|YP_001044150.1| ribonuclease [Rhodobacter sphaeroides ATCC 17029] gi|126104700|gb|ABN77378.1| ribonuclease [Rhodobacter sphaeroides ATCC 17029] Length = 347 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 39/308 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K VT L R +L P G ISR+I + R+ L EI Sbjct: 77 PGQRLLVQVSGVAEPGKAVPVTARLLFKSRLCILTPGAP-GLNISRRIRDEALREELSEI 135 Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 A +G+ILR+A + + EI + L + V + P L+ + Sbjct: 136 ASEAMTGAADDLGLILRSACETASDSEIAAEIVETRALAEAVLADV--AGEPELLVDAPG 193 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 + A RD EI ++ F R G+ Sbjct: 194 AHQLAWRDWSDPSPDEI-----------------------------DEAEGAFERHGVAE 224 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++L +V L ++ + T ALV++DVN+G T AL+ N+ AA E+ RQ Sbjct: 225 ACEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 280 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G +V+DF M K++ ++E+ L+ + + + A + + GL E+ R+R R Sbjct: 281 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 339 Query: 474 SSVLESTT 481 + E T Sbjct: 340 IPLTELLT 347 >gi|332559070|ref|ZP_08413392.1| ribonuclease [Rhodobacter sphaeroides WS8N] gi|332276782|gb|EGJ22097.1| ribonuclease [Rhodobacter sphaeroides WS8N] Length = 347 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 39/308 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K VT L R +L P G ISR+I + R+ L EI Sbjct: 77 PGQRLLVQVSGVAEPGKAVPVTARLLFKSRLCILTPGAP-GLNISRRIRDEALREELSEI 135 Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 A +G+ILR+A + + EI + L + V + P L+ + Sbjct: 136 ASEAMTGAADDLGLILRSACETASDSEIAAEIVETRALAEAVLADV--AGEPELLVDAPG 193 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 + A RD EI ++ F R G+ Sbjct: 194 AHQLAWRDWSDPSPDEI-----------------------------DEAEGAFERHGVAE 224 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++L +V L ++ + T ALV++DVN+G T AL+ N+ AA E+ RQ Sbjct: 225 ACEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 280 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G +V+DF M K++ ++E+ L+ + + + A + + GL E+ R+R R Sbjct: 281 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 339 Query: 474 SSVLESTT 481 + E T Sbjct: 340 IPLTELLT 347 >gi|254437685|ref|ZP_05051179.1| hypothetical protein OA307_2555 [Octadecabacter antarcticus 307] gi|198253131|gb|EDY77445.1| hypothetical protein OA307_2555 [Octadecabacter antarcticus 307] Length = 342 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 112/301 (37%), Gaps = 39/301 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT + RY+++ P G +SR I + R + Sbjct: 76 PGQAILVQVTGYADDGKAIPVTDRVLFKSRYAIVTPGKL-GINVSRSIKDDDVRNRVLAC 134 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A V G G+ILR++ +I D + + + + + Sbjct: 135 AHDEGVSEGFGLILRSSCEGGADADIIEDIAAMDA-------------MASAIMADSDGV 181 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 A+ D L F G+ Q+ Sbjct: 182 AEALTDGDGPHG--------------------LAWREWVEPATVVTDAGGFEHHGVLDQM 221 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 +L V L + ++ + T AL+++DVN+G T L+ N+ A++ + R+LR Sbjct: 222 TALSSARVGLEASAFMYVEPTRALIAVDVNTGGDTSPASS----LKANIAASKALPRELR 277 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G +V+D M K + + +E L+ + + D + + G E+ R+R R Sbjct: 278 LRGLGGQVVIDMAPM-SKAHRKQIESSLRSAFRADSIDTALVGWTPLGHYELQRKRERLP 336 Query: 476 V 476 + Sbjct: 337 I 337 >gi|225378055|ref|ZP_03755276.1| hypothetical protein ROSEINA2194_03715 [Roseburia inulinivorans DSM 16841] gi|225210056|gb|EEG92410.1| hypothetical protein ROSEINA2194_03715 [Roseburia inulinivorans DSM 16841] Length = 330 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 149/328 (45%), Gaps = 27/328 (8%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 LLVQ+ +E K AVT LS AG+Y+VL + S+ N + + KE+ Sbjct: 3 GDELLVQVEREALKTKEPAVTANLSFAGKYAVLTSGNRRLGISSKL--NKEQKAHYKELL 60 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 + G+I+RT AS + + L + W +RE + ++ + Sbjct: 61 HEFDTE-SYGLIIRTNAASVADETLIAEIRSLEQEWSQMRENVCHKTCYSVLKKARPTYL 119 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARI--------------------- 335 +++ +SEII + + + Sbjct: 120 EDVKNQREGSVSEIITDDRGLFETICMDYGIHPKQFMTNGSVPVPVDQFQVPTISGTADS 179 Query: 336 ---VRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 ++ + ++ L+ + ++ L S +++ TEAL IDVNSG++ + Sbjct: 180 LTLTYYHDPMLTLSSLYSVKSSLEKALREQIWLKSGASIVLQHTEALTVIDVNSGKNIIK 239 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 + + L+ NLEAA+EIA QLRLR+++G+I++DFI++ K++ + K+ + LK D Sbjct: 240 KEMRENLLRINLEAAKEIAYQLRLRNISGIIIIDFINLLAKEDEAVLLKEFRTYLKDDPV 299 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLEST 480 + + ++ GL+E++R++I+ S+ +S Sbjct: 300 KTDLIDMTRLGLVEVTRKKIKKSLRDSL 327 >gi|260431290|ref|ZP_05785261.1| ribonuclease, Rne/Rng family [Silicibacter lacuscaerulensis ITI-1157] gi|260415118|gb|EEX08377.1| ribonuclease, Rne/Rng family [Silicibacter lacuscaerulensis ITI-1157] Length = 340 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 110/305 (36%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 ++LLVQ+ K VT + RY+++ P+ G ISR I + +R L I Sbjct: 74 PGEMLLVQVTGYAEPGKALPVTNRVLFKSRYAIVTPDAP-GLNISRSIRDDDERDRLLVI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + G+ILR++ EI D + L + V ++ L +G + Sbjct: 133 AHEQMDGSPFGLILRSSCRGADADEIAEDIAAMRALAEQVVNDTGDATE-TLSEGDGPHV 191 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + F G+ L Sbjct: 192 L--------------------------------AWREWVEPAEVSTQAGGFATHGVLEAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D+ L Y+ I T ALV++DVN+G + N A+E+ R LR Sbjct: 220 DAAQAAAHPLAGGAYMYIEPTRALVAVDVNTG----ADGSLAAGTKANFACAKELPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 +R L G I +D M KK+ R E L+ + K D + + G E+ R+R R Sbjct: 276 VRGLGGQITLDLAPM-PKKDRRGFESALRAAFKADSEETVLAGWTPLGHYELQRKRGRIP 334 Query: 476 VLEST 480 + E Sbjct: 335 LSEVL 339 >gi|77464194|ref|YP_353698.1| hypothetical protein RSP_0624 [Rhodobacter sphaeroides 2.4.1] gi|77388612|gb|ABA79797.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 347 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 128/308 (41%), Gaps = 39/308 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K VT L R +L P G ISR+I + R+ L I Sbjct: 77 PGQRLLVQVSGVAEPGKAVPVTARLLFKSRLCILTPGAP-GLNISRRIRDEALREELSAI 135 Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 A +G+ILR+A + EI + L + V + P L+ + Sbjct: 136 AAEAMTGAADDLGLILRSACETAPDSEIAAEIVETRALAEAVLADV--AGEPELLVDAPG 193 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 + A RD EI ++ F R G+ Sbjct: 194 AHQLAWRDWSDPSPDEI-----------------------------DETEGAFERHGVAE 224 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++L +V L ++ + T ALV++DVN+G T AL+ N+ AA E+ RQ Sbjct: 225 ACEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 280 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G +V+DF M K++ ++E+ L+ + + + A + + GL E+ R+R R Sbjct: 281 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 339 Query: 474 SSVLESTT 481 + E T Sbjct: 340 IPLTELLT 347 >gi|226325085|ref|ZP_03800603.1| hypothetical protein COPCOM_02877 [Coprococcus comes ATCC 27758] gi|225206433|gb|EEG88787.1| hypothetical protein COPCOM_02877 [Coprococcus comes ATCC 27758] Length = 396 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 163/401 (40%), Gaps = 13/401 (3%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 R+ LL E + + + VT + + I +I A ++ Sbjct: 3 RKVLLTECMNRRVLALLEDEKVTEFHFGSSGEKKSCRLGEIYVGRVRKILPNIGGAFVEI 62 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 + + + P + VI LLVQ+ KE K VT L+ G+ Sbjct: 63 ANGEQCYFALDEKYTPVFTNKIGKKPLVI--GDELLVQVEKEAVKTKQPVVTGNLNFTGQ 120 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y VL + + + + G+I RT + +I+ + Sbjct: 121 YVVLTSGNRTIGVSGKIHGARKEE---LQKLGQDYIDCDFGLIFRTNCVEAEETQIRAEI 177 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 + L + + E + + +A+RD+Y KD++EIIV + Sbjct: 178 DKLTENYHRIVEYGKMRTCFSCLQSAPDPCVQALRDIYKKDLTEIIVEETVEDGALYKEV 237 Query: 326 K-----LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 + + + + +P+ +E + Q V + S Y++I TEAL Sbjct: 238 QTYLETEMPDELPLLRAYTDASYPLVKCYNLEGAIREARQERVWMKSGAYLVIQPTEALT 297 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 IDVNSG+ +++ + N EAA E RQ+RLR+++G+I++DFI+M+ + + + Sbjct: 298 VIDVNSGKCLKKNSHF---PEINREAAREAVRQIRLRNISGIIIIDFINMKSAEEKKELL 354 Query: 441 KKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 L+ LKKD V ++ L+E++R++IR ++ ES Sbjct: 355 AYLQLELKKDPNPGNVIGMTKLQLVEITRKKIRKTLEESLH 395 Score = 61.1 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 1 MANKMLIDASHVEETRV-VVLRDNRVEELDF--ESEHKKQIKGNIYLAKVTRVEPSLQAA 57 M K+L+ + RV +L D +V E F E K G IY+ +V ++ P++ A Sbjct: 1 MERKVLL--TECMNRRVLALLEDEKVTEFHFGSSGEKKSCRLGEIYVGRVRKILPNIGGA 58 Query: 58 FVDY 61 FV+ Sbjct: 59 FVEI 62 >gi|163734093|ref|ZP_02141534.1| ribonuclease G, putative [Roseobacter litoralis Och 149] gi|161392629|gb|EDQ16957.1| ribonuclease G, putative [Roseobacter litoralis Och 149] Length = 340 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 108/305 (35%), Gaps = 39/305 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K V L RY ++ P+ G ISR I + +R L EI Sbjct: 74 PGQAVLVQVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAP-GLNISRSIKDEAERDRLLEI 132 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A +G G+ILR++ + + +I +D + + L Sbjct: 133 AHEGAGGSGYGLILRSSCENAAEEDIAQDIDTM-----------------------MGLA 169 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + D + D LL F G+ L Sbjct: 170 TDVLED----------SGTDMAVLATGDGPHLLAWRDWVAPGDVVTEAGSFETHGVLDAL 219 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D L I T AL++IDVN+G T L NL A + R LR Sbjct: 220 DRDRGILQPLDGGASFYIEPTRALIAIDVNTGPDTSLA----AGLNANLGCARMLPRALR 275 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 ++ L G IV+D M KK+ R E ++++ K + + G E+ R+R R Sbjct: 276 VKGLGGQIVLDLAPM-PKKDRRRFETAIRQAFKTCTVETALVGWTPLGHYELQRKRARVP 334 Query: 476 VLEST 480 + E Sbjct: 335 LHEVL 339 >gi|89070658|ref|ZP_01157931.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus HTCC2516] gi|89043738|gb|EAR49941.1| ribonuclease, Rne/Rng family protein [Oceanicola granulosus HTCC2516] Length = 338 Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 119/301 (39%), Gaps = 41/301 (13%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K +T + RY++ P G ISR + + R L+E+ Sbjct: 72 PGQRLLVQVTGYAEPGKAVPLTQRVLFKSRYAIATPEAP-GLNISRALKDEEARVRLREV 130 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A L GMG+ILR++ + + EI D ++ L Sbjct: 131 ATPLVPE-GMGLILRSSCENADEDEIAEDIAAMIDLA----------------------- 166 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 RA+ ++ ++ +++++ F R + L Sbjct: 167 -RAVTSDSGREPEVLVEGDGPHTLAWREWVE---------PAAIVTEPGGFARENVLDLL 216 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++ V L G++ + T ALV++DVN+G T L+ NL A + R LR Sbjct: 217 EAAASPRVPLD-GGHMWVEPTRALVAVDVNTGGDTSPA----AGLKANLAAIAALPRALR 271 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G + +D + K + R E L+ + ++D + + G E+ R+R R+ Sbjct: 272 LRGLGGQVTLDLAPLT-KAHRRQAETALRIAFRRDPVETVLVGWTPLGHYELQRKRERAP 330 Query: 476 V 476 + Sbjct: 331 L 331 >gi|126729157|ref|ZP_01744971.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37] gi|126710147|gb|EBA09199.1| ribonuclease, Rne/Rng family protein [Sagittula stellata E-37] Length = 343 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 117/305 (38%), Gaps = 41/305 (13%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNL-- 232 ++LVQ+ K VT+ L R++++ + + + L Sbjct: 73 SQGGLILVQVTGFAEPGKALPVTSKLLFKSRHAIVTADAPGINVSRQIRDDDAREAVLEL 132 Query: 233 -KEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ +P G G+ILR++ A + D + +L V + Sbjct: 133 AHDVLAEAPLPEGAGLILRSSCAGAADDAVAEDILAMSQLAAAVLSDTTGGAELLV---- 188 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 D L + +D F R G+ Sbjct: 189 -----------------------------EGDGPHALAWREWAEPAEVDDAPGSFERHGV 219 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 + LD+L V L + ++I T AL+++DVN+G T L+ + A ++ Sbjct: 220 DEALDALKSPRVALGANASMVIEPTTALIAVDVNTGGDTSPA----AGLKATIAAFRDLP 275 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQLRLR L G +VVD M KK+ R VE LK +LKKD V +N GLLE+ R+R Sbjct: 276 RQLRLRGLGGQVVVDPAPM-PKKDRRQVESALKAALKKDAVETIVVGWTNLGLLELQRKR 334 Query: 472 IRSSV 476 R V Sbjct: 335 DRVPV 339 >gi|294678070|ref|YP_003578685.1| ribonuclease G [Rhodobacter capsulatus SB 1003] gi|294476890|gb|ADE86278.1| ribonuclease G [Rhodobacter capsulatus SB 1003] Length = 346 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 132/306 (43%), Gaps = 40/306 (13%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 Q +LVQ+ K VT L GRY ++ P G +SR+I R+ L+ Sbjct: 77 SPGQSVLVQVSGGAEPGKAVPVTLRLLFKGRYGIVTPGAP-GLNVSRRIREEDTREGLQA 135 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 +A + + MG+ILR+A + EI D L L + V + L+ + Sbjct: 136 LAGVVMEGSDMGLILRSACEGAEEGEIVEDIAGLRELAEAVLADLDGAPE--LLVDAPAP 193 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + A R+ E++ F G+ Sbjct: 194 HEEAWREWADPAPDEVVEG--------------------------------FEDHGVLEA 221 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 +D++ V LP G+++I T ALV++DVN+G T AL+ N+ AA ++ RQL Sbjct: 222 IDAVLTPRVALPGGGHMMIEPTRALVAVDVNTGPDTS----PAAALKANIAAARDLPRQL 277 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR L G +VVDF M KK+ +E++L+ + K + A + + GL E+ R+R R Sbjct: 278 RLRGLGGQVVVDFAPM-PKKDRLVLEQQLRTAFKGEAAETSLAGWTPLGLFELVRKRDRV 336 Query: 475 SVLEST 480 ++ Sbjct: 337 ALTSLL 342 >gi|260574872|ref|ZP_05842874.1| ribonuclease [Rhodobacter sp. SW2] gi|259022877|gb|EEW26171.1| ribonuclease [Rhodobacter sp. SW2] Length = 347 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 39/307 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VTT L R +++ P S G ISR+I + R L E+ Sbjct: 77 PGQRVLVQVSGTTEPGKALPVTTRLLFKSRLAIVTPGAS-GRNISRRIHDEDTRAGLAEL 135 Query: 236 ARGLEVPAGM--GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 A A G+ILR+A EI D + L V + EG Sbjct: 136 AEAAMQGADPTLGLILRSACDGAEADEIADDITAMRDLAQAVLADLEGGPELLV---EGP 192 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 L + + + + F G+ Sbjct: 193 LAQEIAWRDWSDPAPDEVADAPGA----------------------------FAAHGVAE 224 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 +D+L +V LP G++++ T AL+++DVN+G T +L+ N+ AA ++ RQ Sbjct: 225 MVDALLVPQVALPGGGHMMLEPTRALLAVDVNTGPDTSPA----ASLKANIAAARDLPRQ 280 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G +VVDF M KK+ +++ L+ + K + A + + GL E+ R+R R Sbjct: 281 LRLRGLGGQVVVDFAPM-SKKDRAVLDQVLRAAFKGEAAETSLAGWTPLGLYELVRKRDR 339 Query: 474 SSVLEST 480 + E+ Sbjct: 340 VPLAEAV 346 >gi|221640077|ref|YP_002526339.1| Ribonuclease [Rhodobacter sphaeroides KD131] gi|221160858|gb|ACM01838.1| Ribonuclease [Rhodobacter sphaeroides KD131] Length = 346 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 128/308 (41%), Gaps = 39/308 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q +LVQ+ K VT L R +L P G ISR+I + R+ L EI Sbjct: 76 PGQRVLVQVSGVAEPGKAVPVTARLLFKNRLCILTPGAP-GLNISRRIRDEALREELSEI 134 Query: 236 ARGLEV--PAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 A +G+ILR+A + EI + L + V + L+ + Sbjct: 135 ASEAMTGAAEDLGLILRSACEAAPDAEIAAEIAETRALAEAVLADV--AGEAELLVDAPG 192 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 + A RD EI ++ F R G+ Sbjct: 193 AHQLAWRDWSDPSPDEI-----------------------------DEAEGAFERHGVAE 223 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 ++L +V L ++ + T ALV++DVN+G T AL+ N+ AA E+ RQ Sbjct: 224 ICEALLSAQVPLGGGAHMAVEPTRALVAVDVNTGSDTS----PAAALKANVAAARELPRQ 279 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G +V+DF M K++ ++E+ L+ + + + A + + GL E+ R+R R Sbjct: 280 LRLRGLGGQVVIDFAPM-PKRDRVALEQVLRAAFRGESAETSLAGWTPLGLYELVRKRDR 338 Query: 474 SSVLESTT 481 + E T Sbjct: 339 IPLTELLT 346 >gi|254674065|emb|CBA09849.1| putative ribonuclease [Neisseria meningitidis alpha275] Length = 155 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 83/152 (54%) Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR+L G+I++DFIDM ++ + +V ++L ++L DR RV + ++ GL+E++R+R R Sbjct: 1 MRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLGLVELTRKRSR 60 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 ++ + + C C+G G +++ +V I R + +Y A + + +V+ L+ Sbjct: 61 ENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESFRILAAPNVIDLFLD 120 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI 565 ++ ++ G I++ + + + I Sbjct: 121 EESQSLAMLIDFIGKPISLAVETAYTQEQYDI 152 >gi|213024531|ref|ZP_03338978.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 231 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 35/64 (54%), Positives = 45/64 (70%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIH 75 RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG RHGFLP EI Sbjct: 2 RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA 61 Query: 76 PDYY 79 +Y+ Sbjct: 62 REYF 65 Score = 88.9 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 111 DVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE-----DVKGGSPEDVPKKFK 165 D+ I + ++ A I E S+ +A D + Sbjct: 13 DLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAH 72 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I++V++ Q ++VQI KEERGNKGAA+TT++SLAG Y VLMPN + ISR+I Sbjct: 73 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 132 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + LKE LE+P GMG+I+RTAG ++ ++ D + ++ W+ +++ A + AP Sbjct: 133 DDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAP 191 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 L+++E N+I RA RD +DI EI++ K A+ + Sbjct: 192 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHI 231 >gi|84499990|ref|ZP_00998256.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis HTCC2597] gi|84391924|gb|EAQ04192.1| ribonuclease, Rne/Rng family protein [Oceanicola batsensis HTCC2597] Length = 353 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + LLVQ+ K VTT L R++++ P G +SR++ + R L E Sbjct: 77 SPGEPLLVQVTGHAEPGKAIPVTTRLLFKSRHAIVTPEAP-GLNVSRQVRDEAARDALLE 135 Query: 235 IARGLEVPA-----GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 IA G+ILR++ + + D + L V + Sbjct: 136 IAHDTLAGHAILDRNGGLILRSSCEGADEEAVAEDIRAMADLAVQVLGDVAGAPEKL--- 192 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 D Q E Sbjct: 193 ------------------------------TEGDGPHATAWREWTEPAQIETEAGCLEDH 222 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 GI ++++L + VTL S + + T A ++DVN+G T L+ NL A + Sbjct: 223 GILEKIEALLRPAVTLGSAT-MFVEPTRAFTAVDVNTGGDTSLA----AGLKANLATARD 277 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 + RQLRLR L G I++D M KK+ R+ E L+ +L+ D + + G E+ R Sbjct: 278 LPRQLRLRGLGGQIILDLAPM-PKKDRRTFETVLRAALRADDTDTVLAGWTPLGNYELQR 336 Query: 470 QRIRSSVLESTTKV 483 +R R + + T+ Sbjct: 337 KRARQPLTQIVTEE 350 >gi|257462244|ref|ZP_05626661.1| putative ribonuclease [Fusobacterium sp. D12] gi|317059913|ref|ZP_07924398.1| ribonuclease G [Fusobacterium sp. D12] gi|313685589|gb|EFS22424.1| ribonuclease G [Fusobacterium sp. D12] Length = 425 Score = 118 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 19/347 (5%) Query: 174 IKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLK 233 Q +VQ+++EER K A V+ + + Y V P +G +SRKI +R+ L+ Sbjct: 64 FPEGQEKIVQVLQEEREGKLAEVSQKIEMTTPYFVFFPYE-RGVHLSRKIQEKEERERLE 122 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 I + ++RT + + +K + + +++ W+ +++ A + Sbjct: 123 NIFQPYRER--ASFLIRTEAKGQQEETLKEEIQKMLKEWEQIQKKAFELRERGNLRTSLP 180 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 ++ + K+ E ++ ++ + Y + +R+Y ++ + +E Sbjct: 181 WMEEFLEQYGKKEWKSCYCEN----FECQELLEKNLSFYQKRLREYHGDISLWKQRKLEE 236 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 Q+ L Q +V LPS GY+ I +T+A V+IDVN G + NLEAA+EI RQ Sbjct: 237 QIAQLCQEKVYLPSGGYLFIEKTKACVTIDVNRGPAGLHAS--------NLEAAKEIPRQ 288 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR+LAG++V+DFI ++ + + + LK D + G F + SRQR Sbjct: 289 VRLRNLAGMVVIDFISNKKSEERKEIIDTLKREFSTDNHFLTWGGFHEFDVFLFSRQRKG 348 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNII 520 + K + ++ + +L E L NI+ Sbjct: 349 KELSSYYDKNNVF----YQVQCLENECKELLEKGENILSVEAEKNIL 391 >gi|242054377|ref|XP_002456334.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor] gi|241928309|gb|EES01454.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor] Length = 651 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 124/380 (32%), Gaps = 86/380 (22%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 +L+++S R+ VL D ++ EL E +IYL VT++ P + AFVD G + Sbjct: 241 ILMNSSVCTIQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTKLVPHMGGAFVDIGIS 300 Query: 65 RHGFLPFLE-----IHPDYYQI----PFSDR----------------------------- 86 R + + ++P ++ P D Sbjct: 301 RPSLMSIKQNRDPFVYPQVFKNRGTDPIDDSYCNEENLPTYENDDDMSDDEFENEETHDG 360 Query: 87 -----QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 + + S+A ++V + + + ++ + E E+ + Sbjct: 361 SSFPVENITDNEEAVVLASDAKINNVDGDEFDSISVYDEDKDEENDHMEDEYSEDILQGD 420 Query: 142 NNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS 201 +++ ++++ + ++ ++VQ++KE G KG ++ + Sbjct: 421 QSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMVQVIKEGLGTKGPTLSPFPC 480 Query: 202 LAGRYS-------------------VLMPNT----------------------SKGETIS 220 L R+ + P+ +S Sbjct: 481 LRSRFWVANNRSSIVLFTFHLVPQIKINPHYLQEILGLTSAVYLLSLQILVSRGNKVGVS 540 Query: 221 RKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELAL 280 +KIT + + L P G + RT A + E+++D + L+ W + E A Sbjct: 541 KKITGIERTR--LKGITKLLRPPGFTLTARTVAAGHSWEELQKDLDGLLSTWKGITEHAQ 598 Query: 281 NSVAPHLVYEEGNLIKRAIR 300 ++ EG + R Sbjct: 599 SAALAAEEGVEGAVPVMLHR 618 >gi|330722233|gb|EGH00119.1| Cytoplasmic axial filament protein CafA and Ribonuclease G [gamma proteobacterium IMCC2047] Length = 153 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 73/136 (53%) Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489 M E ++ R V + L+++L+KD A+ + +S+ GL+EM+R+R R ++ + + C C+G Sbjct: 15 MLEAEHQRQVMRMLEKALEKDHAKTNIIGMSDLGLVEMTRKRTRENLRQILCETCPECQG 74 Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 G +++ +V I+R + Y +++ +V V L+ ++ ++I + EA + Sbjct: 75 IGTVKTPETVCYEIIREIVRQARTYNSNSFLVVASPSVADKLMEEESSSIADLEAFINKN 134 Query: 550 INVVIGIELADKLFYI 565 I V + + F + Sbjct: 135 IKVQAEVMYSQSEFEV 150 >gi|319651716|ref|ZP_08005842.1| hypothetical protein HMPREF1013_02454 [Bacillus sp. 2_A_57_CT2] gi|317396535|gb|EFV77247.1| hypothetical protein HMPREF1013_02454 [Bacillus sp. 2_A_57_CT2] Length = 175 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 85/137 (62%) Query: 335 IVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHC 394 +R + IF +E ++D + V L + Y+I ++TEAL IDVN+G+ + Sbjct: 17 PIRLHSGKENIFSAFNVESEIDKALKRIVWLETGAYLIFDETEALTVIDVNTGKFAGKQD 76 Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 +T L+TN +AAEE ARQ+RLRD+ G+I++DFIDM+E + + ++ +LKKD R Sbjct: 77 RRETVLKTNQQAAEEAARQIRLRDIGGMILIDFIDMKEASDRNHILSTMENALKKDERRT 136 Query: 455 QVGAISNFGLLEMSRQR 471 ++ + G+L+M+R++ Sbjct: 137 KLVGFTPLGILQMTRKK 153 >gi|317496735|ref|ZP_07955065.1| ribonuclease E/G family protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895747|gb|EFV17899.1| ribonuclease E/G family protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 244 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 7/249 (2%) Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 V G ILRT A K ++ + + L + + APHLV + + Sbjct: 1 MAETLVTQEYGFILRTEAAKADKEDVLMEADQLSAKYHEIVSKRQYRKAPHLVDTNYDAL 60 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + D+ I I+ E+ + K+ + I R L Sbjct: 61 EVLVHDIKPGSIDRIVTDQEEVGEQLKEKGYEV-------FLCSYMAGDIERRYRFRHYL 113 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + + ++ + S G++ I QTEA+ IDVN+G+S + E + NLEAA+E ARQ+R Sbjct: 114 SEVFKRKIFMKSGGFLYIEQTEAMAVIDVNTGKSIGKKNQEAHIKKINLEAAKEAARQIR 173 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR+L+G+I++DFIDM+ K + + + + ++ L D + I+ G++E++R++ ++ Sbjct: 174 LRNLSGIIMIDFIDMKSKDDEKELLQVMQHYLNGDSKKAVAVDITKLGIMEITRKKEKNP 233 Query: 476 VLESTTKVC 484 + + Sbjct: 234 IFRQISIDI 242 >gi|83945211|ref|ZP_00957560.1| ribonuclease E [Oceanicaulis alexandrii HTCC2633] gi|83851381|gb|EAP89237.1| ribonuclease E [Oceanicaulis alexandrii HTCC2633] Length = 346 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 7/219 (3%) Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 ++ D + V+LP G ++I A+ IDV+S + AL N A Sbjct: 132 AEVELDQLFDEALEAVVSLPGGGRLVIEPVTAMTVIDVDSAGRQSQGGSPKMALDLNKTA 191 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 A E ARQ+RLR + G++ +DF+ +++K++ +++ LK + K+D A++ V S F ++E Sbjct: 192 ARETARQIRLRGIGGVVAIDFLPLKKKQDQSQLDQSLKGAFKRDPAKIDVAPASRFAIVE 251 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 +SRQR+ ++ E C + S + AL+ LR +E + + ++ Sbjct: 252 LSRQRLGRALHEI-------CWERFGVESVETRALAALRRLEAEGKAKRGGRLALLAGAE 304 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 V +L ++R G +V+ + F + Sbjct: 305 VHAWLEKDPIGWSKAMKSRLGDRFELVLDEARGARDFEV 343 Score = 70.8 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 14 ETRVVVLRDNRVEELDFES---EHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLP 70 ETR V+ +R EL E K+ +G +Y A+VT+++ ++ AF D G GFLP Sbjct: 3 ETRAAVIDGDRAVELHVERWSERGKRAWRGEVYRARVTKIDHAINGAFCDIGRGPAGFLP 62 Query: 71 F 71 F Sbjct: 63 F 63 >gi|146276653|ref|YP_001166812.1| ribonuclease G and E-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145554894|gb|ABP69507.1| Ribonuclease G and E-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 346 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 78/307 (25%), Positives = 118/307 (38%), Gaps = 39/307 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPV--DRKNLK 233 Q LLVQ+ K A VTT L R +L P G ISR+I + + Sbjct: 76 PGQRLLVQVSGVAEPGKAAPVTTRLLFKSRLCILTPGAP-GLNISRRIRDEDLRAELSAL 134 Query: 234 EIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 +G+ILR+A EI + L + V + P L+ + Sbjct: 135 AAEAMAGADEDLGLILRSACEGAPDSEIAAEIAETRALSEAVLADL--AGDPELLVDAPG 192 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 A RD EI ++ F R G+ Sbjct: 193 AHHLAWRDWSDPPPDEI-----------------------------DEAEGAFARHGVAD 223 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 D+L V L ++ + T ALV++DVN+G T N+ AA E+ RQ Sbjct: 224 LCDALLSPLVPLGGGAHMAVEPTRALVAVDVNTGADTSPAAALKA----NVAAARELPRQ 279 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G + +DF M KK+ ++E+ L+ + + + A + + GL E+ R+R R Sbjct: 280 LRLRGLGGQVAIDFAPM-PKKDRVALEQVLRAAFRGEAAETSLAGWTPLGLYELVRKRDR 338 Query: 474 SSVLEST 480 + E Sbjct: 339 LPLTELL 345 >gi|89055360|ref|YP_510811.1| ribonuclease [Jannaschia sp. CCS1] gi|88864909|gb|ABD55786.1| ribonuclease Rne/Rng family [Jannaschia sp. CCS1] Length = 344 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 103/304 (33%), Gaps = 40/304 (13%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 ++LVQ+ K A VT L RY+++ P + L+ Sbjct: 78 PGDVVLVQVSGVAEPGKAAPVTPDLIFKSRYAIVTPRKPGLNVSRAIRDEDERDRLLEIA 137 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 +G G+I+R++ + D + +V + Sbjct: 138 HDSAASASGFGLIVRSSAEGVLADVLSEDIAAMCATAADVMVEEAGAP------------ 185 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 E ++ + + +A E F G+ + Sbjct: 186 -------------EWLLDADDAHVQAWR----------DWDTPDEVIEGGFADHGVLEAV 222 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 D+ LP I T AL+++DVN+G L+ NL E+ R R Sbjct: 223 DAALSPHQPLPGGASAFIEATRALIAVDVNTG----TDHSLAAGLKANLALVRELPRLTR 278 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 ++ L G +D M K++ + VE +K++ + V V + G LE++ +R R+ Sbjct: 279 IKGLGGQFTLDLAPM-PKRDRKQVEDAVKKAFRLGGGDVVVAGWTPLGNLELTSKRDRAP 337 Query: 476 VLES 479 + + Sbjct: 338 LAQV 341 >gi|46190682|ref|ZP_00121242.2| COG1530: Ribonucleases G and E [Bifidobacterium longum DJO10A] Length = 881 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 160/342 (46%), Gaps = 11/342 (3%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR +++E S + + V+ + + + Sbjct: 543 DRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIG 602 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 N G D + + I+ K+ +LVQ+ K+ G+KGA +T+ ++LAG Sbjct: 603 QARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG 662 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R+ VL+P+ + ++ + P MGVI+RTA ++ I +D Sbjct: 663 RFLVLVPSGGMTGVSRKL---SERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKD 719 Query: 265 FEYLMRLWDNVREL---ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 E L+R W+ + + P L+ E ++ R +RD++ D S++IV G+K Y Sbjct: 720 LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRI 779 Query: 322 KDFMKLLMPSYARIVRQYEDPHPI----FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 ++++ + P + +++ F + I+ QL + +V LPS G ++I++TE Sbjct: 780 EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTE 839 Query: 378 ALVSIDVNSGRST-REHCIEDTALQTNLEAAEEIARQLRLRD 418 A+ +IDVN+GR + +E+T + NLEA+EEIARQLRLRD Sbjct: 840 AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRD 881 Score = 92.3 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ V+ DN + E + Q GNIYL +V V PS++AAFVD G R+G L E+ Sbjct: 555 TQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 614 Query: 75 HPD 77 + D Sbjct: 615 NWD 617 >gi|126726690|ref|ZP_01742530.1| hypothetical protein RB2150_17209 [Rhodobacterales bacterium HTCC2150] gi|126704019|gb|EBA03112.1| hypothetical protein RB2150_17209 [Rhodobacterales bacterium HTCC2150] Length = 344 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 39/301 (12%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 + +LVQ+ KG VT L +++++ P+ G ISR I + R L+ Sbjct: 77 PGETMLVQVTGVTEPGKGIPVTDRLLFKSKFAIVTPDRP-GLNISRSIQDEDIRLALRAA 135 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 L MGVI+R+ A +E+ D ++ L + + + Sbjct: 136 VEPLCEDDRMGVIIRSIAAEADPLEVAEDTAEMLDLAHAMEAERTGAPQLLFNGPD---- 191 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 + + E F +G+ Q+ Sbjct: 192 -----------------------------AHHMAWREWGMPDDVETEMGCFEHTGVLEQM 222 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 +++ + L G + + T ALV++DVN+G L+TN+ AA + R LR Sbjct: 223 EAIFADGMALAGGGTLFVEPTRALVAVDVNTG----ADGSPMAGLKTNIAAARALPRALR 278 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 LR L G IVVDF M KK+ + +E+ L + KKD + + G E+ R+R R+ Sbjct: 279 LRGLGGQIVVDFAPM-AKKDRKQLEQVLTAAFKKDTTETNLVGWTTMGNFELQRKRERAP 337 Query: 476 V 476 + Sbjct: 338 L 338 >gi|172058119|ref|YP_001814579.1| ribonuclease G and E-like protein [Exiguobacterium sibiricum 255-15] gi|171990640|gb|ACB61562.1| Ribonuclease G and E-like protein [Exiguobacterium sibiricum 255-15] Length = 445 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 139/319 (43%), Gaps = 23/319 (7%) Query: 162 KKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISR 221 +++ I + ++ Q LLVQ+VKE K VT ++ GR+ V P + SR Sbjct: 75 RRYPEVPTIGQAVQVGQTLLVQVVKEGAAPKQHKVTQNITYGGRFLVYFP-YGRRVRFSR 133 Query: 222 KITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALN 281 K+ D +++A+ + V G++ RT A + + LM +R + Sbjct: 134 KL----DLVVQQQLAKVIPVAEEEGILYRTEAA-------QAEVGVLMTELKQLRARHQH 182 Query: 282 SVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYED 341 + + ++ LI I++ + + +E + M L + R Sbjct: 183 MLQQATLEQDEPLI---IQEAKRLSHVAEALVTTRAEKERLEQMGLQVERPVIKGRLPVM 239 Query: 342 PHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQ 401 ++ ++ V L Y++I + E + IDVNSG++ + T Q Sbjct: 240 EQ-------VDRAIEKALDRVVWLDGGAYLLIEEVETMTVIDVNSGKTVSVKEQKRTFDQ 292 Query: 402 TNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISN 461 N AA EI RQLRLR+++G+I VDF+ K V + LKE + +++V + Sbjct: 293 INEAAAVEIMRQLRLRNISGMIAVDFLR-GSSKGQTRVTQLLKERAAHESKQIEVYGFTK 351 Query: 462 FGLLEMSRQRIRSSVLEST 480 GL E++RQR S+ E + Sbjct: 352 MGLCELTRQRHGKSLFERS 370 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 16 RVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF 58 RV ++ RV E E + G + AKV R+ P+L+AAF Sbjct: 13 RVALVEGGRVVEYH-ERMRDEIRVGTLLHAKVDRLHPTLEAAF 54 >gi|255027992|ref|ZP_05299978.1| hypothetical protein LmonocytFSL_19213 [Listeria monocytogenes FSL J2-003] Length = 179 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 92/178 (51%) Query: 310 IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369 + + + +F K+L Y + +F GI+ Q+D L + V L + Sbjct: 2 QRYAPSEVITDDFEFAKMLEMIYPDKQIILKKSADLFADLGIKAQMDRLARPVVHLSNGS 61 Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429 + I +TEA+ +DVNSG+ E T NL+A EI RQ+RLR+++G+I+VDFI Sbjct: 62 SLFIEKTEAMWVVDVNSGKFKGTTVKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIG 121 Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 + + L+ +++ QV A+S GLL+++R++ + S LE+TT C C Sbjct: 122 GMSEAGYTELYAALESQTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVC 179 >gi|8101758|gb|AAF72648.1|AF259270_1 ribonuclease E [Pectobacterium carotovorum] Length = 64 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 44/63 (69%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 63 GNR 65 R Sbjct: 62 AER 64 >gi|229918392|ref|YP_002887038.1| ribonuclease G and E-like protein [Exiguobacterium sp. AT1b] gi|229469821|gb|ACQ71593.1| Ribonuclease G and E-like protein [Exiguobacterium sp. AT1b] Length = 441 Score = 110 bits (274), Expect = 9e-22, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 25/320 (7%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 + I + + LVQ+ KE K VT + GRY V P + + SRK Sbjct: 75 SYPEVPAIGQAAVVGEKRLVQLTKEGINGKHHKVTENIRFGGRYLVYFPF-GRRQLFSRK 133 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 + + K L++ GV+ RT ++ + L V E Sbjct: 134 LDLVTQDRLSKA----LDLTEEEGVLFRTEAGQVAPEALQEELNRLRHRSIVVIEQR--- 186 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 ++ L ++ +R E ++ +K + + V+++ Sbjct: 187 -----FGQDELLCEQFVRRHA----VESVLLNDKEGQSRLE-------RLDVPVKRHIGK 230 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 + ++ ++ L V L +V+I Q E + IDVNSG++ A Sbjct: 231 GRMPEAKHLDGAIEKLESRAVWLDGGAFVLIEQVETMTVIDVNSGKNVAVKDKGRAADTI 290 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 N A I QLRLR++ G+IV+DF+ K+ + KK+KE +D RV+V + Sbjct: 291 NEAALYSIMEQLRLRNIGGMIVIDFLR-GSKEGQTRLLKKMKELGARDPRRVEVYGFTRM 349 Query: 463 GLLEMSRQRIRSSVLESTTK 482 GL E+SR+R S+ + Sbjct: 350 GLFELSRERTGRSIQDRMFH 369 >gi|119384529|ref|YP_915585.1| ribonuclease [Paracoccus denitrificans PD1222] gi|119374296|gb|ABL69889.1| ribonuclease [Paracoccus denitrificans PD1222] Length = 353 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 114/300 (38%), Gaps = 37/300 (12%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + Q LLVQ+ K V+ L+ GR+ ++ P R + + + Sbjct: 77 REGQSLLVQVNGSAEDGKAVPVSARLNFRGRHVIVTPGAPGVNVSRRIRDSALRDALTRL 136 Query: 235 IARGLEVPAGM-GVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGN 293 LE G++ R+ A+ I + E L+ L V + L E Sbjct: 137 GEAALEGLEDPPGIVFRSIAATAGSDGIAAELEQLLELAQAVTADHQGAPELLLDAPE-- 194 Query: 294 LIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV 353 ++ +++ D ED F +G E Sbjct: 195 -------------------PADQAWQDWAD----------PPPDSVEDGDDAFEATGAEA 225 Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 + + + L + I ALV+IDVN+G L+ N+ A ++ RQ Sbjct: 226 AVLQMLHPRLDLGGGAWAEIEALRALVAIDVNTGS----DHSPAAGLKANIALARDLPRQ 281 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LRLR L G IV+DF M K++ ++E+ L+ + + + A + + GL E+SR+R R Sbjct: 282 LRLRGLGGQIVIDFAPM-PKRDRGTLEQVLRAAFRSESAETVLIGWTAMGLYELSRKRDR 340 >gi|254294126|ref|YP_003060149.1| ribonuclease G and E-like protein [Hirschia baltica ATCC 49814] gi|254042657|gb|ACT59452.1| Ribonuclease G and E-like protein [Hirschia baltica ATCC 49814] Length = 362 Score = 110 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 11/214 (5%) Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIAR 412 +D QT+ L G + + T AL+S+DV++G + A++TNL AA+ IA Sbjct: 155 EAIDEALQTKCNLIGGGCIYVEPTRALISVDVDAGNRINKGNRSQFAVETNLLAADAIAN 214 Query: 413 QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKD-RARVQVGAISNFGLLEMSRQR 471 +L L LAGL+V+DF+ M K++ V + +L K + Q+ +S FG+LE++ Sbjct: 215 KLSLSSLAGLVVIDFLKMTTKEHAIQVPSAFEGALSKYLGRKSQLARLSQFGILEVNIAH 274 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 S + + + AL LR +E + + + +L Sbjct: 275 TFSPIPHIVASLD----------NGEWYALRFLRELERQATGSRGAFFLCNVSQRIHRWL 324 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 R G +V L F I Sbjct: 325 QASSIEWSKRLVERIGKRFEIVEDATLEKSEFKI 358 >gi|83949644|ref|ZP_00958377.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM] gi|83837543|gb|EAP76839.1| ribonuclease, Rne/Rng family protein [Roseovarius nubinhibens ISM] Length = 345 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 79/298 (26%), Positives = 114/298 (38%), Gaps = 39/298 (13%) Query: 176 NRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEI 235 Q LLVQ+ K VT + RY+++ P G ISR I + R L E+ Sbjct: 75 PGQTLLVQVTGHAEPGKAIPVTAKILFKSRYAIVTPEAP-GLNISRSIRDDDRRDALLEL 133 Query: 236 ARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLI 295 A + MG+ILR+A EI D + L + + A + L Sbjct: 134 AHAGMEGSAMGLILRSAAEEAEAEEIAEDIAAMRSLAEEITADAEGAAEVLL-------- 185 Query: 296 KRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQL 355 D L + F R + QL Sbjct: 186 -------------------------EGDGPHGLAWRDWAMPADVITEPGGFAREEVLDQL 220 Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 ++L Q V L + I T ALV++DVN+G T + NL AA E+ RQLR Sbjct: 221 EALRQDAVPLSGGASMWIEPTRALVAVDVNTGGDTSPA----AGHKANLAAARELPRQLR 276 Query: 416 LRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 LR L G +V+D M KK+ R E L+ + + D+ + + G E+ R+R R Sbjct: 277 LRGLGGQVVLDLAPM-PKKDRRGFESTLRAAFRADQVETALVGWTPLGHYELQRKRDR 333 >gi|306821354|ref|ZP_07454962.1| possible bifunctional ribonuclease G/cytoplasmic axial filament protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550572|gb|EFM38555.1| possible bifunctional ribonuclease G/cytoplasmic axial filament protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 451 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 77/406 (18%), Positives = 164/406 (40%), Gaps = 20/406 (4%) Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 +++ S + + + + L QI K K ++ ++L+GR Sbjct: 49 KKKRQNISMKSSALSLDSEITGFMQGQDGYDADMSLCQIKKIFANEKNPKLSREITLSGR 108 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 Y V + S+G +IS K + +LK + VI+R+ + I + Sbjct: 109 YVVFI-GGSRGLSISNKAGDKTMLDDLKSKIED-KTIEKAKVIIRSQASLEDIDAILLEI 166 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 E + +D + + + P L+Y + + + + + + Sbjct: 167 EEFEKTYDEILQKSKLISKPQLLYRQYESEEMFLSKINT-------QVDLLITNDKQSVK 219 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 L +A YE +F + GI+ ++ L +VTL + + I TEA+ IDVN Sbjct: 220 FLEKSRFAPREIIYEKEADLFIKYGIDTEIRQLLDEKVTLKNGINLFIQSTEAMSIIDVN 279 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 S + A N EEI RQ+ LRD++G+I++DFIDM ++K ++ +++ + + Sbjct: 280 SAGYFKYKDFSQNAYHVNHLVCEEIVRQICLRDISGVILIDFIDMRDEKLSKKLQEHISK 339 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 L+KD + V +SN ++++ R++ ++ E+ +++ + + Sbjct: 340 CLEKDDRKSTVSKLSNSDIMQIIRKKEDITIEENLIDT------KITLKNIEYIFEEVDS 393 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 + ++ I + + + + E ++ V I+ Sbjct: 394 KI-SNVISEDTKKITIDMPI----FESVKANNYLSILENKYNVKIS 434 >gi|218658581|ref|ZP_03514511.1| probable ribonuclease protein [Rhizobium etli IE4771] Length = 222 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 146/184 (79%), Positives = 162/184 (88%) Query: 231 NLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+NVR L L S AP LVYE Sbjct: 1 RLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVYE 60 Query: 291 EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSG 350 EG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LMPS+A++V+ Y D HPIF RSG Sbjct: 61 EGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSG 120 Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 IE QLD + Q +VTL S GY+I+NQTEALVSIDVNSGRSTREH IEDTALQTNLEAAEEI Sbjct: 121 IEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAEEI 180 Query: 411 ARQL 414 ARQL Sbjct: 181 ARQL 184 >gi|126735247|ref|ZP_01750993.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. CCS2] gi|126715802|gb|EBA12667.1| ribonuclease, Rne/Rng family protein [Roseobacter sp. CCS2] Length = 344 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 80/310 (25%), Positives = 119/310 (38%), Gaps = 40/310 (12%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + Q LLVQ+ K VT + RY+++ P G ISR+IT+ R L Sbjct: 75 RPGQPLLVQVTGIAEDGKAVPVTDRVLFKSRYAIVTPGKP-GLNISRQITDEDVRDGLLA 133 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 IA + G+I+R++ K E+ D ++ L D V + A + L +G Sbjct: 134 IAHEVFDSP-HGLIMRSSCEGADKAEVAEDIVAMLSLADAVLDDAAGTTPEALTEGDGP- 191 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + F G+ Q Sbjct: 192 -------------------------------HAVAWREWTGAADVVTEAGAFEGLGVLDQ 220 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 LD+L Q V L G++ + T ALV++DVN+G T L + R L Sbjct: 221 LDALAQPRVALGE-GHMYVEPTRALVAVDVNTGNDTSPAAALKANLAAARA----LPRAL 275 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR LAG I VDF+ M K + + VE+ L+ S + D + + GL EM R+R R Sbjct: 276 RLRGLAGQITVDFVSM-SKAHRKQVEQSLRASFRADPIETSLVGWTPMGLFEMQRKRERP 334 Query: 475 SVLESTTKVC 484 + K Sbjct: 335 PFPKHLLKDI 344 >gi|317471318|ref|ZP_07930677.1| ribonuclease E/G family protein [Anaerostipes sp. 3_2_56FAA] gi|316901211|gb|EFV23166.1| ribonuclease E/G family protein [Anaerostipes sp. 3_2_56FAA] Length = 227 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 7/230 (3%) Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 +RT + + +I R+ L + +RE L+ + R + L Sbjct: 1 MRTEAENADQDKIGREAASLAERYVQIREKQQYMKPCRLLATNQSFSSRYVFGLSPSRAE 60 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 II E ++ + ++ R I + L+++ T V L S Sbjct: 61 RIISDDEVI-------LREAEENGYQVRRMDRQDQSIERGYRLSHALEAVFHTRVWLRSG 113 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 G++II +TEA+ +DVN+G+S E ++ N EAA E ARQ+RLR+L+G+I+VDFI Sbjct: 114 GFLIIERTEAMTVVDVNTGKSIGRGQKEGHIIKINREAARETARQIRLRNLSGIILVDFI 173 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 DM+EK+ + ++ L +D + ++ GL+E++R++IR + + Sbjct: 174 DMKEKEEEGRLLSYMQTMLNRDSKKAVAVDMTKLGLMEITRKKIRRPLEK 223 >gi|302670803|ref|YP_003830763.1| ribonuclease Rne/Rng family [Butyrivibrio proteoclasticus B316] gi|302395276|gb|ADL34181.1| ribonuclease Rne/Rng family [Butyrivibrio proteoclasticus B316] Length = 385 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 127/317 (40%), Gaps = 36/317 (11%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR----- 229 KN ++VQI E K A +TT LS++G+YSV+ S + Sbjct: 88 KNGDEIIVQIDSEAIKTKKAKLTTALSVSGKYSVITVGRSGVGASVKLSDEVRRHLVDST 147 Query: 230 ----KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 N+++ + +G+I+RT + + + ++ Sbjct: 148 RNIFNNIRDEYCDRLYGSDIGLIIRTNAGEIPEEAFEAEISDDIKNCAE----------- 196 Query: 286 HLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPI 345 R Y + + Sbjct: 197 --------------RVATILSEGRSRTIYTCLYHAGVNNLDRAKSFMKNAGIIDCRVIED 242 Query: 346 FFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLE 405 GI ++D L Q + L S ++II Q E+ +IDVN+G++ + +L+ NLE Sbjct: 243 NGIHGIRSKIDELRQNRIWLKSGAFIIIEQLESFNAIDVNTGKAIKGKSNI--SLEVNLE 300 Query: 406 AAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLL 465 AA EI RQ+RLR+L G+I++DFI+M++ ++ + +K+ ++D+ I+ G++ Sbjct: 301 AANEIMRQVRLRNLTGMILIDFINMKQDEDYEKLIAHMKKLCRQDQIHTNYVDITGLGIM 360 Query: 466 EMSRQRIRSSVLESTTK 482 E++R + S+ E + Sbjct: 361 ELTRNKNDKSLKEILHE 377 Score = 43.8 bits (101), Expect = 0.092, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 D R+E L FE ++ +IY+ KV + +L AAF+ Y G+LP +I Sbjct: 22 DGRMEFLSFERDNH---INDIYIGKVDHIVKNLNAAFIKYDSENIGYLPLDKI 71 >gi|154482904|ref|ZP_02025352.1| hypothetical protein EUBVEN_00601 [Eubacterium ventriosum ATCC 27560] gi|149736188|gb|EDM52074.1| hypothetical protein EUBVEN_00601 [Eubacterium ventriosum ATCC 27560] Length = 154 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 82/141 (58%) Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + + +E L+ L +V L S Y+II TEAL IDVN+G++ + E T Sbjct: 7 NSKISLCNKYSLETHLNRLLSKKVWLKSGAYLIIEPTEALTVIDVNTGKADLKTNKESTF 66 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 + NLEAA+EIA Q++LR+++G+I+VDFI+M K+ + ++ E L D + V I Sbjct: 67 KKINLEAAKEIALQMKLRNISGIIIVDFINMSNNKDYDILTHEMSEYLTNDFSISNVVDI 126 Query: 460 SNFGLLEMSRQRIRSSVLEST 480 + GL+E++R++ S+ E Sbjct: 127 TKLGLMELTRKKKEKSLEEIV 147 >gi|308806017|ref|XP_003080320.1| COG1530: Ribonucleases G and E (ISS) [Ostreococcus tauri] gi|116058780|emb|CAL54487.1| COG1530: Ribonucleases G and E (ISS) [Ostreococcus tauri] Length = 670 Score = 105 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 100/496 (20%), Positives = 182/496 (36%), Gaps = 82/496 (16%) Query: 19 VLRDNRVEELDFESEH-----KKQIKGNIYLAKVT-RVEPSLQAAFVDYGGNRHGFLPFL 72 ++ D V E+ ES + K G++YLA V +V P++++ V G G Sbjct: 188 LVEDGEVVEV-LESANEAHDDKGARVGDVYLATVVGKV-PNMRSVLV--GVEMKG----- 238 Query: 73 EIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132 D + + ALL++ A + G + EE Sbjct: 239 ----DRF-----TKTALLRDGLSAPAAWWKGVESDRVGIDASYFEAQYEEEEEEDANLGP 289 Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 + S S+ N K Y I ++V+I ++ R NK Sbjct: 290 NYKLSNQSSQN---------ASEQLVRAGKYAFGLYDI------GDSVIVEITRDSRENK 334 Query: 193 GAAVTTYLSLAGRYSVLM-PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMG----- 246 GA + SL GR++V T S+K++ + + LE G Sbjct: 335 GAIASAEPSLTGRFTVFEGTATGTSARASKKLSVVSRDFLAQWGTKALEKVWGNRAQKLN 394 Query: 247 ------------VILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE---- 290 +I+R+A + + R+ +L W +V A SV Sbjct: 395 ERFPDMRGGGAHLIMRSASVGASSEVLTREVRHLASTWTSVLVRAAKSVEKARERRYPLR 454 Query: 291 -------EGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPH 343 + +R+L +IS +++ + K+ + A Sbjct: 455 PRLLWRDDITFKDAILRELCSLNISSVVLPNDAAPETVKELAHSVSILRADTADL-NTEI 513 Query: 344 PIFFRSGIEVQLDSL--HQTEVTLP--SRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + + + V LP ++I TEAL +IDVN+G + + Sbjct: 514 RTEDPDKMRQLVQRAIRFEERVPLPGTQSAQLVIQGTEALTAIDVNTG------SCKKSI 567 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKN---NRSVEKKLKESLKKDRARVQV 456 + N+ AA A ++R R+++G+IV+DF+++ ++ R +E + + +DR ++ Sbjct: 568 AEINVIAARTAALEIRRRNISGIIVIDFVNVHPRQRDQVYRQIEAEFAHAAVRDRGKISF 627 Query: 457 GAISNFGLLEMSRQRI 472 IS FGLL+++R I Sbjct: 628 TPISPFGLLQITRSHI 643 >gi|299143818|ref|ZP_07036898.1| ribonucleases G and E [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518303|gb|EFI42042.1| ribonucleases G and E [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 364 Score = 105 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 80/311 (25%), Positives = 129/311 (41%), Gaps = 18/311 (5%) Query: 170 IQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDR 229 I IK +LVQI K NK +T LS+ G+Y + P + K N + Sbjct: 70 IDGDIKVGDDILVQIKKIPEENKLVKLTMELSVDGKYIIYFPMEKFVKFS--KNLNFEKK 127 Query: 230 KNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 LK+ A + GV+ RT + EI ++ L + + + P L+Y Sbjct: 128 NELKKFAVKNNLR---GVLFRTNANNAQTDEILEEYSELFDIGNKLIREKNLRPTPKLIY 184 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRS 349 + + + + ++L + Y+ I + Sbjct: 185 -------------CKSGVEDFLRDNVVDEDVIINDIQLYNTYKNKYNLIYDKDFKIIYNR 231 Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 I L V L S ++I +T AL SIDVN+ EDT + N EAA E Sbjct: 232 EILEDYKKLFLKTVKLKSGANIVIEETAALSSIDVNTANFVGNLDFEDTIFKVNEEAAVE 291 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 IARQ+ LR+++G+I++DFIDM+ + + K L+ KKD +R V + L+E+SR Sbjct: 292 IARQIILRNISGIIIIDFIDMKTYSEKKKILKILQREFKKDFSRTVVYGFTKLNLVEISR 351 Query: 470 QRIRSSVLEST 480 + + + Sbjct: 352 KNLGVKLKNKL 362 Score = 49.2 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 18/225 (8%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIP 82 NR+++L+ ES + +IY +V + S+ A FV+ G +G+L +I D I Sbjct: 26 NRIQDLE-ESRIR-----DIYRGRVENIVHSMNAVFVNIGTE-NGYLNLEDIDGD---IK 75 Query: 83 FSD--RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 D + K + + V + + + NF ++ E + Sbjct: 76 VGDDILVQIKKIPEENKLVKLTMELSVDGKYIIYFPMEKFVKFSKNLNFEKKNELKKFAV 135 Query: 141 ANN------DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGA 194 NN +N E I+E L+ Sbjct: 136 KNNLRGVLFRTNANNAQTDEILEEYSELFDIGNKLIREKNLRPTPKLIYCKSGVEDFLRD 195 Query: 195 AVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGL 239 V + + +K I K + + + E + L Sbjct: 196 NVVDEDVIINDIQLYNTYKNKYNLIYDKDFKIIYNREILEDYKKL 240 >gi|310816489|ref|YP_003964453.1| ribonuclease, Rne/Rng family [Ketogulonicigenium vulgare Y25] gi|308755224|gb|ADO43153.1| ribonuclease, Rne/Rng family [Ketogulonicigenium vulgare Y25] Length = 347 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 77/309 (24%), Positives = 119/309 (38%), Gaps = 43/309 (13%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 Q +LVQ+ K VT + R++++ P G ISR+I + +R L Sbjct: 73 HPGQAMLVQVTGIAEDGKAVPVTDRVLFKSRFAIITPGAP-GRNISRQIDDEEERDRLAA 131 Query: 235 IARGLEVPAGMGV---ILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 IA A G I+R++ A + +I D ++ L V A + L + Sbjct: 132 IAHEAMEGADEGTFGLIIRSSAAGADEDDIYDDIREMLDLAVAVMADAEGTEPEALTEGD 191 Query: 292 GNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGI 351 G A R+ DI I F R G+ Sbjct: 192 GPHDL-AWREWSAPDIETI--------------------------------PGGFAREGV 218 Query: 352 EVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIA 411 + ++ L +T V + G + + T ALV+IDVN+G T L + Sbjct: 219 DQMIEDLAETRVEIGE-GTMYVETTRALVAIDVNTGGDTSPAAALKANLAAARA----LP 273 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 R LR+R L G I VDF M K + + VE+ L+ S K D + + GL E+ R+R Sbjct: 274 RALRMRGLGGQIAVDFAPM-SKAHRKQVEQSLRASFKLDPIETSLVGWTTMGLFELQRKR 332 Query: 472 IRSSVLEST 480 R + + Sbjct: 333 ERLPLAQLL 341 >gi|284101253|ref|ZP_06386014.1| ribonuclease G [Candidatus Poribacteria sp. WGA-A3] gi|283830361|gb|EFC34586.1| ribonuclease G [Candidatus Poribacteria sp. WGA-A3] Length = 61 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++ I+ + +ETRV VL + V EL + KK GN+Y KV +V P +QAAFVD Sbjct: 1 MGVEIAINMT-PQETRVAVLENKVVMELYVDRAKKKDFXGNVYKGKVVKVLPGMQAAFVD 59 Query: 61 YG 62 G Sbjct: 60 IG 61 >gi|256750955|ref|ZP_05491838.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750065|gb|EEU63086.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 293 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 95/292 (32%), Gaps = 7/292 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 ++++D +++ +L + +++E E K I GNIY K+ V +QAAFVD G Sbjct: 5 KRLILDIDE-NLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIG 63 Query: 63 GNRHGFLPFLEIHPDYYQIPFSDRQALLKESNI----AQTDSEAVADDVTHGDVTIPNDH 118 ++ FL F ++ +P S Q L I ++ VT Sbjct: 64 IGKNAFLFFDDVLFQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANISLPGKYV 123 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQ 178 L S EEE ++V ++ G + I+E ++ Sbjct: 124 VLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQIREDLEELI 183 Query: 179 ILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARG 238 L +I K+ + ++ + + E + + + +N+K + Sbjct: 184 RLYEKIQKDFQNAPLPSLI--YKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKRYLKN 241 Query: 239 LEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYE 290 + + + D ++W L N Sbjct: 242 VGKENISVTYEEGDLLGIYGADFQVDKLLEKKVWLKKWGLCNNRPNRSSYCN 293 >gi|304439840|ref|ZP_07399734.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371579|gb|EFM25191.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 345 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 17/262 (6%) Query: 214 SKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWD 273 + N +K KE L+ + GV+ RT S T+ E+ ++E + +++ Sbjct: 95 PGRYMVKIGGENKFSKKLSKEEVEDLKKYSFEGVLFRTEAKSATEEELLNEYEKINSIYN 154 Query: 274 NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 V AP L L +R + D E I++ + + + Y Sbjct: 155 MVGYEKDFEPAPRL------LYRRDVVDEVVGRYDEDIITND----------REIYKKYK 198 Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 + D + S I + L + +V L S G ++I T AL IDVNS ++ + Sbjct: 199 NNYKIEYDKNFEIKYSKIYLDYLKLFEEKVELKSGGNIVIEDTTALTVIDVNSDKNW-DT 257 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 +++ AL TN EA EEI Q++LR+++G+I+VDFI+M+++K+ + K+ + Sbjct: 258 SMKNLALSTNREAIEEIMWQVKLRNISGIIIVDFINMKDQKDREKILNFAKKLNSTMNLK 317 Query: 454 VQVGAISNFGLLEMSRQRIRSS 475 + + + GLLE+SRQ + Sbjct: 318 LSIHGFTKLGLLEISRQNMGER 339 Score = 41.1 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 +R+EE+ FE K I NIYL +V SL+A FVD G + Sbjct: 16 DRLEEI-FEFGEKN-ILDNIYLGRVVEYNSSLEAYFVDIGRTK 56 >gi|84516474|ref|ZP_01003833.1| ribonuclease, Rne/Rng family [Loktanella vestfoldensis SKA53] gi|84509510|gb|EAQ05968.1| ribonuclease, Rne/Rng family [Loktanella vestfoldensis SKA53] Length = 344 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 77/302 (25%), Positives = 115/302 (38%), Gaps = 40/302 (13%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 + Q LLVQ+ G+K VT + RY+++ P G ISR+I + R NL Sbjct: 75 RQGQALLVQVTGYAEGSKAVPVTDRVLFKSRYAIVTPGKP-GLNISRQIVDEDIRDNLLA 133 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 G+ILR++ + EI D ++ L D V A L + Sbjct: 134 -IAHAAHEGEHGLILRSSCETADPTEIAEDITAMLDLADAVLADADGDSPEALTEGDSPH 192 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + A RD + F G+ Q Sbjct: 193 VL-AWRDWTGASEIVTV-------------------------------PGSFASHGVLEQ 220 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + +L Q V L G + + T ALV++DVN+G T L + R L Sbjct: 221 IAALGQALVPLGE-GQMYVEPTRALVAVDVNTGSDTTPAAALKANLAAARA----LPRAL 275 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR L G I VDF+ M K + + VE+ L+ + K D + + GL E+ R+R R Sbjct: 276 RLRGLGGQISVDFVSM-SKTHRKQVEQSLRAAFKNDPVETSLVGWTPMGLFELQRKRERL 334 Query: 475 SV 476 + Sbjct: 335 PL 336 >gi|145348989|ref|XP_001418923.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579153|gb|ABO97216.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 684 Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 86/501 (17%), Positives = 166/501 (33%), Gaps = 89/501 (17%) Query: 18 VVLRDNRVEEL-----DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72 V+ D E+ D E + G++YL V P++ Sbjct: 193 VLTEDGEAVEILENVRDEEEGDQAMRVGDVYLGTVVSKVPNM------------------ 234 Query: 73 EIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132 + L+ + ++ V + I Sbjct: 235 -------------KSLLVGVATKNGKFTKTVLLRDGLSQPAAWWKGQESDKVVIEASEVS 281 Query: 133 TEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNK 192 +E + S + K+ Y I ++++I+++ R +K Sbjct: 282 LPDEDEDVEMKLISSMMHSDMNDQLARAGKQAFGMYNI------GDAVILEIIRDSREHK 335 Query: 193 GAAVTTYLSLAGRYSVLM-PNTSKGETISRKITNPVDRKNLKEIARGLEVPA-------- 243 GA T SL GR++V S+K++ + L+ Sbjct: 336 GAIATAEPSLTGRFTVFKGTANGVSAHASKKLSVVTRDSLAQWGENTLKQTWRYGLEKIK 395 Query: 244 --------------GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVY 289 G +I+R+A AS + R+ L R W ++ A SV Sbjct: 396 DKNEAPLFTGFHGGGAHLIMRSASASAPPDVVTREVSELTRRWKSMCISAAKSVTKSRKR 455 Query: 290 EEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK------LLMPSYARIVRQYEDPH 343 ++ + + RD + + +R + Sbjct: 456 QQPLVPRLLWRDNTNFKGMVLRELASTNIHSIVMPNDSKPEELEEITKSVSTLRADTEEM 515 Query: 344 PIFFRSGIEVQLDSLHQT--------EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCI 395 R G +V++ +L + + ++I TEAL +IDVN+G S Sbjct: 516 QTVVRVGSQVKMQNLIRRARTFSERVTIPDTQSAQLVIQSTEALTAIDVNTGSS------ 569 Query: 396 EDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN----RSVEKKLKESLKKDR 451 + + N+ AA A ++R R+++G+IV+DF++ K R +E + ++ +DR Sbjct: 570 RMSVAEINVMAARTAAAEIRRRNISGIIVIDFVNAGNPKTRDQIYRQIEAEFADAATRDR 629 Query: 452 ARVQVGAISNFGLLEMSRQRI 472 ++ IS FGL++++R I Sbjct: 630 GKISFMPISAFGLMQITRSHI 650 >gi|8101756|gb|AAF72647.1|AF259269_1 ribonuclease E [Serratia marcescens] Length = 58 Score = 99.7 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL+AAFV Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFV 58 >gi|311031487|ref|ZP_07709577.1| cytosolic axial filament protein [Bacillus sp. m3-13] Length = 207 Score = 98.9 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNR 65 LI E RV + D+++ EL + I+GNIY+ +V V P +QAAFVD+G + Sbjct: 4 LIMDMKATEKRVAIKEDDKIVELLIDRPTTHPIEGNIYIGRVVNVLPGMQAAFVDFGQKK 63 Query: 66 HGFLP 70 G+L Sbjct: 64 PGYLH 68 >gi|254479618|ref|ZP_05092925.1| S1 RNA binding domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034446|gb|EEB75213.1| S1 RNA binding domain protein [Carboxydibrachium pacificum DSM 12653] Length = 244 Score = 97.0 bits (239), Expect = 9e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +++ID ++ L D +++E E ++ K I GNIY KV V +QAAFVD G Sbjct: 2 KRLIIDIDEKL-CQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIG 60 Query: 63 GNRHGFLPFLEI 74 N++ FL ++ Sbjct: 61 LNKNAFLFLEDV 72 Score = 60.4 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 9/235 (3%) Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVED-------VKGGSPE 158 D + D L+E P + +V+ ++ K Sbjct: 9 DEKLCQIAFLEDGKLKEYRPERKNGKNILGNIYKGKVENVLKGMQAAFVDIGLNKNAFLF 68 Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 + I +V+K Q ++VQ+ KE G K VTT +S+ G Y VLMP Sbjct: 69 LEDVVGREDKSITQVLKPGQEVMVQVTKEAIGLKSPRVTTNISIPGEYVVLMPFM-NYVN 127 Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 +S +I NP DR L EIAR L+ GMG+I+RT+ + + EIK D E L+ +++ ++E Sbjct: 128 VSHRIENPADRAKLAEIARRLKPE-GMGLIMRTSSKNAKEEEIKEDIEKLLSVYEKIKEN 186 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYA 333 +P L+Y E ++ + +RD D+ EI+++ E+ Y + ++K + Sbjct: 187 FKLLPSPSLIYSEESIAVKYLRDFLSYDVDEIVINDEEEYEKVNQYLKKIGKDIE 241 >gi|46201808|ref|ZP_00208255.1| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 96.2 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 8/136 (5%) Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 ++ + + LP G ++I QT AL +IDV+S + N A Sbjct: 137 AHHEVDEAMAAALDPVAPLPGGGRLVIEQTAALTAIDVDSAGGRP--------AEVNAAA 188 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 EIARQ+RLR+L G +VVDFI ++K + + L++++ D V +S GL+E Sbjct: 189 VTEIARQMRLRNLGGQVVVDFISGRDRKPLFRLVEALRQAVAADPVPTHVFGLSPLGLVE 248 Query: 467 MSRQRIRSSVLESTTK 482 ++R+R S+ E + Sbjct: 249 LTRERRGPSLAELLCR 264 Score = 54.2 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 1 MANKM-LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFV 59 M+ + ++ +S E R +VL + R EL + + G+++ +VT ++ L AAFV Sbjct: 1 MSESIDILVSSGPGEARYLVLAEGRPVELVVDRPS--LLLGSVFRGRVTALDKGLDAAFV 58 Query: 60 DYGGN-RHGFLP 70 + G GFLP Sbjct: 59 NLGAGACPGFLP 70 >gi|218506992|ref|ZP_03504870.1| probable ribonuclease protein [Rhizobium etli Brasil 5] Length = 164 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 124/163 (76%), Positives = 140/163 (85%) Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 ISRKITN DRK LKEIAR LEVP GMGVILRTAGA+RTK+E+KRDFEYLMRLW+NVR L Sbjct: 2 ISRKITNLADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTL 61 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 L S AP LVYEEG+LIKR+IRDLY KDI EIIV+GE GYREAKDFMK+LMPS+A++V+ Sbjct: 62 TLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEDGYREAKDFMKMLMPSHAKVVQP 121 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 Y D HPIF RSGIE QLD + Q +VTL S GY+I+NQTEALVS Sbjct: 122 YRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVS 164 >gi|23006419|ref|ZP_00048748.1| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum MS-1] Length = 307 Score = 94.7 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 T++ VL D + E + + + GN+YL +V V PS++AAF+D G R+ L E+ Sbjct: 93 TQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEV 152 Query: 75 HPD 77 + D Sbjct: 153 NWD 155 >gi|167945681|ref|ZP_02532755.1| ribonuclease E [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 60 Score = 93.9 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 38/56 (67%) Query: 6 LIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY 61 LI+A+ EE RV + ++ LD E ++Q K NIY K+TRVEPSL+AAFV+Y Sbjct: 4 LINATQPEELRVATVDGQKLFNLDIEIPGREQKKANIYKGKITRVEPSLEAAFVEY 59 >gi|229829095|ref|ZP_04455164.1| hypothetical protein GCWU000342_01180 [Shuttleworthia satelles DSM 14600] gi|229792258|gb|EEP28372.1| hypothetical protein GCWU000342_01180 [Shuttleworthia satelles DSM 14600] Length = 371 Score = 92.0 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 103/319 (32%), Gaps = 37/319 (11%) Query: 163 KFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRK 222 + R+ E I +L+QIV + +K A ++ + + + + ISRK Sbjct: 89 NYVRRQSKSEGIHGGDQILLQIVADPIKSKDAIGSSDIVFKSADVIAHLGSGESG-ISRK 147 Query: 223 ITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNS 282 I+ R+ L++ + LRT+ AS + E+ E L+ ++ + Sbjct: 148 ISGQDRRR-LRDFL-SACQGENYHLTLRTSAASLGEEELSGQVEALVEQMEDFQATIGQQ 205 Query: 283 VAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDP 342 + L + I+ I E+ + + Sbjct: 206 ALFTVFQPGQPLWMERLMTYPAGQIASITSDLEEVIASFAGERNNGSHTQGSKGCSWTRR 265 Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQT 402 D L+ Sbjct: 266 ADSR----------------------------------LADYAPLFHAYRDEYPLYQLRN 291 Query: 403 NLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNF 462 +EI+ + G IV+DFI+M +K++ V + L K+D V + ++ Sbjct: 292 LTRLMKEISSRTVWLPCGGNIVIDFINMRDKRDLTRVMEHLSSCCKRDPQGVSLVDVTAL 351 Query: 463 GLLEMSRQRIRSSVLESTT 481 GL+E++RQ+ +S+ + + Sbjct: 352 GLVEITRQKKYASLKQILS 370 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 D + EL E+ + + G I++ ++ + PSL AAFVD + FLP PD Sbjct: 33 DGQAIELQVENLARPSMVGQIHIGRIQKYLPSLHAAFVDIADQKKVFLPVK--SPD 86 >gi|160947331|ref|ZP_02094498.1| hypothetical protein PEPMIC_01265 [Parvimonas micra ATCC 33270] gi|158446465|gb|EDP23460.1| hypothetical protein PEPMIC_01265 [Parvimonas micra ATCC 33270] Length = 366 Score = 91.2 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 16/297 (5%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K ++ V+I K G K V+ S++ +S + + IS+K+ + Sbjct: 84 KVGDVIFVEIYKINGGEKAPNVSMNFSVSSMFSAVSYKNREEILISKKLKEHNFDLEQIK 143 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + V LRT + + D + + + N P L+Y++ N Sbjct: 144 NIKS-----NFSVKLRTKSIDCDEYTLLNDIRKNVEKMQEIVDSLNNLPVPKLIYKKENF 198 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 + + + + I++ ++ Y+ KD + + +Y+D + + I V Sbjct: 199 LDDFLFEN---EKHCCILNDKEIYKSFKD------NKFLKNELKYDDEYSPRYDYNIGVY 249 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 L+ L++ V + ++I + EAL IDVNS + T E AL NL A EEI RQ+ Sbjct: 250 LEGLNKKTVEV-EDINIVIEKMEALTVIDVNSKKKTSEINKSKNALSVNLIAIEEIIRQI 308 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RD++G+I+VDFI+M+ K+ +E+K+KE D + GL E++RQR Sbjct: 309 SFRDISGIIIVDFINMKTKE-KEILEEKIKEIQIFDNKIWNFHGFTKLGLYEITRQR 364 >gi|328753017|gb|EGF66633.1| S1 RNA binding domain protein [Propionibacterium acnes HL087PA1] Length = 468 Score = 89.3 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 32/69 (46%) Query: 18 VVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 VL D + E + GNIYL KV V PS++AAF+D G R+ L E+ Sbjct: 372 AVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWA 431 Query: 78 YYQIPFSDR 86 Y D+ Sbjct: 432 KYGKEGEDK 440 >gi|83312436|ref|YP_422700.1| ribonuclease G and E [Magnetospirillum magneticum AMB-1] gi|82947277|dbj|BAE52141.1| Ribonuclease G and E [Magnetospirillum magneticum AMB-1] Length = 344 Score = 88.5 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 8/143 (5%) Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 E ++ L ++ V L G ++I AL +IDV+S + Sbjct: 130 EAEIVTDAHHEVDEVLQAVLDPVVPLKGGGRLVIEPAAALTAIDVDSAGARP-------- 181 Query: 400 LQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAI 459 + N A EIARQLRLR + G +VVDF+ ++K + + LK+++ D V + Sbjct: 182 AEANGAAVTEIARQLRLRGIGGQVVVDFVSGRDRKPLFRLAEALKQAVAADSTPTHVFGV 241 Query: 460 SNFGLLEMSRQRIRSSVLESTTK 482 S GL+E++R+R ++ E + Sbjct: 242 SPLGLVELTRERRGPALAELLCR 264 Score = 58.1 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG- 62 ++LI A E R +VL D + EL + + +++ +VT ++ L AAFVD G Sbjct: 6 EILISA-GPGEARYLVLADGQPLELVIDRPS--LLLDSVFRGRVTALDKGLDAAFVDLGT 62 Query: 63 GNRHGFLP 70 G R GFLP Sbjct: 63 GPRPGFLP 70 >gi|52695529|pdb|1SMX|A Chain A, Crystal Structure Of The S1 Domain Of Rnase E From E. Coli (Native) gi|52695530|pdb|1SMX|B Chain B, Crystal Structure Of The S1 Domain Of Rnase E From E. Coli (Native) gi|52695531|pdb|1SN8|A Chain A, Crystal Structure Of The S1 Domain Of Rnase E From E. Coli (Pb Derivative) gi|52695532|pdb|1SN8|B Chain B, Crystal Structure Of The S1 Domain Of Rnase E From E. Coli (Pb Derivative) gi|159163015|pdb|1SLJ|A Chain A, Solution Structure Of The S1 Domain Of Rnase E From E. Coli Length = 96 Score = 88.5 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 28/44 (63%), Positives = 34/44 (77%) Query: 36 KQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYY 79 +Q K NIY K+TR+EPSL+AAFVDYG RHGFLP EI +Y+ Sbjct: 6 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYF 49 >gi|11467658|ref|NP_050710.1| ribonuclease E [Guillardia theta] gi|6094110|sp|O78453|RNE_GUITH RecName: Full=Ribonuclease E homolog; Short=RNase E gi|3602983|gb|AAC35644.1| ribonuclease E [Guillardia theta] Length = 429 Score = 88.1 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 118/336 (35%), Gaps = 13/336 (3%) Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + +P + Q+ + + L+Q++KE NK A +T+++ L L Sbjct: 59 DSERNQGFIPFTLLIKKSNQQFVIPNSVFLIQVIKEPTINKPATLTSHIFLNSFNLNLQ- 117 Query: 212 NTSKGETISRKITNPVDRKNLKEIAR-----GLEVPAGMGVILRTAGASRTKIEIKRDFE 266 + N + M IL ++KI Sbjct: 118 FSGIDCKYLNLYPNIKFLHICLITLLIPSGLDINFDHSMKDILYLDLIGQSKILYYSFSN 177 Query: 267 YLMRLWD-NVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 +L + + + L +I D + + Sbjct: 178 LFTKLLRIKKMPQFIFRNSNFFLPILNKLSLSSINDFFVSSYQRAVYLRHFLITHYFTIK 237 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + + V +++I +TEAL+SIDVN Sbjct: 238 QTDYRILFYPTAYKSMQLYYLDMLFY-----RSLKPIVYTLYGIFIVICKTEALISIDVN 292 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 SG + + TNL A++ I ++++LR+LAG+IV+DF+DM +K+ + + Sbjct: 293 SGSHSSRVSQNLSLH-TNLIASKSIIKEIKLRNLAGVIVIDFVDMIHQKDQIHLLAFFRY 351 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTT 481 L + + + +S+ GLLE++R+R S+ + Sbjct: 352 LLNINSVMITLIQLSDIGLLELTRKRQDQSIYDVFQ 387 >gi|114797667|ref|YP_760437.1| hypothetical protein HNE_1732 [Hyphomonas neptunium ATCC 15444] gi|114737841|gb|ABI75966.1| hypothetical protein HNE_1732 [Hyphomonas neptunium ATCC 15444] Length = 356 Score = 88.1 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 8/204 (3%) Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + +VTLP G + I +T AL + D++S + AL N EAAE Sbjct: 146 RMAAAFEDALSPDVTLPGGGRLRIERTRALTAADIDSAGRAMKGSAAARALSLNKEAAEA 205 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV-QVGAISNFGLLEMS 468 +ARQ+ +R L GL V+D + K+ + + + + AR +V A S GL+E+S Sbjct: 206 LARQILIRGLGGLFVLDCVSPLTKETSTKLREAFLAAWDGMTARPARVLAPSALGLMELS 265 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 + + + E + + + ++AL+ LR +E Q + + Sbjct: 266 TEWRITPLNEMLLDMAG-------LPTAETLALAGLRLLEAEARQTRMGRLKLSLPQAAF 318 Query: 529 LYLLNQKRATIVEYEARFGVSINV 552 +L + +++G + + Sbjct: 319 AWLTASGMDAEAQLASKYGARLTI 342 >gi|8101754|gb|AAF72646.1|AF259268_1 ribonuclease E [Providencia alcalifaciens] Length = 53 Score = 86.2 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 35/52 (67%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSL 54 +MLI+A+ EE RV ++ R+ +LD ES +Q K NIY K+TR+EPSL Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSL 53 >gi|296117423|ref|ZP_06836011.1| putative ribonuclease [Gluconacetobacter hansenii ATCC 23769] gi|295976025|gb|EFG82815.1| putative ribonuclease [Gluconacetobacter hansenii ATCC 23769] Length = 369 Score = 85.8 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 23/216 (10%) Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408 E+ +SL V LP I T ALV+ID++ G ++ + + TA N A Sbjct: 164 ETEMMAESLSDPFVALPGGMSATITPTPALVAIDMDGGHTSMDRRPKQTAQFAANRAALP 223 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 E+ QLRLR+L+G IVVD + +K R++ + ++++L D R + IS GL E+ Sbjct: 224 ELLHQLRLRNLSGAIVVDAAGLAVRK-RRALAEPIEQALAADPLRPRFLGISALGLAEIV 282 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTA----HNIIVHTH 524 R RI + E SV +LRS+ + + Y + + Sbjct: 283 RPRIHPPLHELL----------------DSVTGRLLRSLRQKVRDYRGMQVPRPVTLQAG 326 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 D+V + A + ++ G + V I +L Sbjct: 327 CDIVRMMRT-YPAWMEDFTRLTGCPLRVTIAPDLPP 361 Score = 60.0 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 4 KMLI-DASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 MLI AS E RV + R+ + G++Y +V+ P+L FVD Sbjct: 2 NMLIRVASGPGELRVALTDGGRLLDYALWRPDLPDGVGDLYRGRVSAHVPALGGTFVDLT 61 Query: 63 GNRHGFLPFLE 73 + GFLP E Sbjct: 62 DGQAGFLPDSE 72 >gi|315651654|ref|ZP_07904665.1| ribonuclease G [Eubacterium saburreum DSM 3986] gi|315486108|gb|EFU76479.1| ribonuclease G [Eubacterium saburreum DSM 3986] Length = 343 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 1/209 (0%) Query: 273 DNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSY 332 DN++ +P ++Y N I+D +I+ ++ Y F+ Sbjct: 128 DNIKARKNYIKSPCMLYAGENDYIEIIKDRLKYSAFDIVTDIKEIYDGTVSFLSQNYSEA 187 Query: 333 ARIVRQYEDPHPIFFRSGIEVQL-DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 VR Y+D + L +S +V L GY+ I TEAL IDVN+G++ + Sbjct: 188 VDRVRFYDDTMITLNKLYSIDTLFESAVNKKVWLNDGGYLFIESTEALTVIDVNTGKNVQ 247 Query: 392 EHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDR 451 + L TNLEA +E ARQ+RLR+++G+I++D I+ +K + +K+ LK+DR Sbjct: 248 KKDASAIKLNTNLEAIKESARQMRLRNISGIIIIDLINTTDKSQIDLIYHTMKDYLKEDR 307 Query: 452 ARVQVGAISNFGLLEMSRQRIRSSVLEST 480 I+ L E++R++ + S+LE Sbjct: 308 LNAVAIDITKLCLFEITRRKRKPSLLEVM 336 Score = 46.1 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 9/114 (7%) Query: 29 DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88 + E + G+I++ +V ++ ++ AAFV+ N+ E Y+ D + Sbjct: 31 EIEYIENNSLLGSIHIGRVKKISKNINAAFVEIEYNK-------ERQIVYFD--MDDFKY 81 Query: 89 LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 L+ D V + A I++ S E + N Sbjct: 82 LIFADEKEHPVLYEGDDIVIRISKLPIKNKLAGATADISDVSGEVLDNIKARKN 135 >gi|330994104|ref|ZP_08318033.1| Putative ribonuclease E [Gluconacetobacter sp. SXCC-1] gi|329758841|gb|EGG75356.1| Putative ribonuclease E [Gluconacetobacter sp. SXCC-1] Length = 372 Score = 85.0 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 16/211 (7%) Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408 + Q+D+L V LP I T AL +ID++ G ++ + + TA N +A Sbjct: 166 DLRAQVDALEDPVVQLPGGMTASITPTPALTAIDMDGGGASMDRRPKQTAQFAANRDALP 225 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 ++ QLRLR+L+G I+VD + +K R++ + ++ LK D R + + GL E+ Sbjct: 226 DLLHQLRLRNLSGAIIVDVAGLAIRK-RRALAETVETVLKDDPLRPRFLGFTALGLAEIV 284 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR-SVEEYLLQYTAHNIIVHTHSDV 527 R R+ + E S L LR ++ Y ++ Sbjct: 285 RPRVHPPLHELFH-------------SHEGRLLRALRVQMQAYRGMPPNGRPVLLACGQA 331 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 L L+ + ++ G + V L Sbjct: 332 TLRLVQDHPGWMADFLRLTGRVLQPVADPTL 362 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDY-GGNRHG 67 +S E R+ V + R+ + G++Y A+V+ P+L F+ G + G Sbjct: 8 SSSPGEVRIAVTDNGRLCDFALWRPDMADGVGDLYRARVSAHVPALGGTFIALPGLEQAG 67 Query: 68 FLPFLE 73 FLP E Sbjct: 68 FLPDSE 73 >gi|213864708|ref|ZP_03386827.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 51 Score = 85.0 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 31/42 (73%) Query: 31 ESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72 ES +Q K NIY K+TR+EPSL+AAFVDYG RHGFLP Sbjct: 1 ESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 42 >gi|289671958|ref|ZP_06492848.1| ribonuclease E [Pseudomonas syringae pv. syringae FF5] Length = 51 Score = 84.6 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 36/51 (70%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQ 55 MLI+A+ EE RV ++ R+ +LD ES ++Q K NIY ++TR+EPSL+ Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLE 51 >gi|228967526|ref|ZP_04128553.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str. T04001] gi|228792181|gb|EEM39756.1| Ribonuclease, Rne/Rng [Bacillus thuringiensis serovar sotto str. T04001] Length = 129 Score = 84.3 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + ++ + E RV + ++ E ++ +++I G+IY ++ R + AAFV+ G Sbjct: 2 KTLYVNYA-GSEKRVAIEEKKKIVEFLWKRNEEQEIVGHIYAGRIVRTIAGMNAAFVNIG 60 Query: 63 GNRHGFLPFLEIHPDY 78 +H +L + ++ Y Sbjct: 61 LEKHAYLSYDDVPSCY 76 >gi|258543061|ref|YP_003188494.1| hypothetical protein APA01_19920 [Acetobacter pasteurianus IFO 3283-01] gi|256634139|dbj|BAI00115.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256637199|dbj|BAI03168.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256640251|dbj|BAI06213.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256643308|dbj|BAI09263.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256646363|dbj|BAI12311.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256649416|dbj|BAI15357.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256652402|dbj|BAI18336.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655460|dbj|BAI21387.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 361 Score = 84.3 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 21/210 (10%) Query: 354 QLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQ 413 +L + V LP I T AL +ID+++ + N +A E+ Q Sbjct: 166 ACHALEDSTVELPGNMQATITPTPALTAIDMDAPPVAGSRPKQTAQFAANRDALPELLHQ 225 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIR 473 +RLR+L+G IV+D M +K ++++ ++ +L+ D R + IS GL+E+ R RI Sbjct: 226 IRLRNLSGAIVIDPAGMAMRK-RQALQDVVQAALQADPLRPRCLGISALGLIEIVRPRIH 284 Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 S+ E + A + +ILR + + V + Sbjct: 285 PSLPELLNSPHGHALKALRTILAEAPTATILRGSIPLIRA------LEQDPQAVADCV-- 336 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLF 563 G + + L F Sbjct: 337 ----------QLRGKPLALKADPAL--PDF 354 Score = 55.4 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAF-----VDYGG 63 A+ E R+ V +D+ + + + GNIY+A+V QAAF VD G Sbjct: 8 ATFPGEMRLAVTQDDTLLDYALWRPAAPDLVGNIYVARVAA-----QAAFMGGAFVDLGQ 62 Query: 64 NRHGFLP 70 GFL Sbjct: 63 GLQGFLS 69 >gi|256750954|ref|ZP_05491837.1| ribonuclease [Thermoanaerobacter ethanolicus CCSD1] gi|256750064|gb|EEU63085.1| ribonuclease [Thermoanaerobacter ethanolicus CCSD1] Length = 137 Score = 83.9 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 2/137 (1%) Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489 M+ + R + + K L+KDR + V + GL+EM+R+R+RS V + C C+G Sbjct: 1 MKNENFKRDLLEFFKRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEG 60 Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 G + S + + ++E L A I + + VV + ++ I Y+ +F V Sbjct: 61 EGMVYSTEYIYRRLRNNIERVLRHVNARKIYIKGNDKVVK--IASEKGIIKFYKEKFNVD 118 Query: 550 INVVIGIELADKLFYIE 566 + +V+ F IE Sbjct: 119 LELVVDNNKKYGHFEIE 135 >gi|291519382|emb|CBK74603.1| Ribonuclease E/G family [Butyrivibrio fibrisolvens 16/4] Length = 211 Score = 83.9 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 5/209 (2%) Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 + + D Y L ++ I+ I + + Sbjct: 1 MFIKKKVCQGDRFYVKITQDKKNTKPYSCSFLKIEDYKNDNTSYINYYIETYCDEAVQII 60 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ I +D ++ LD V L S ++I +TEA+ + Sbjct: 61 TDLEEYKFPNLNIRLYNDDSLSLWNLYSFNSILDKATSKIVHLKSGANLLIEKTEAMTIV 120 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DVNS ++ + + N EA +E+ +QLRLR ++G+I+VD + + ++ ++ + Sbjct: 121 DVNSSKNYGKTDF----YKINEEAIQELIKQLRLRSISGIILVDLLKVSSEE-QEALINE 175 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQR 471 +K + K D +++ V SN GLLE++R R Sbjct: 176 IKNAAKDDISQIDVHGFSNLGLLELTRSR 204 >gi|294084881|ref|YP_003551641.1| Rne/Rng family ribonuclease [Candidatus Puniceispirillum marinum IMCC1322] gi|292664456|gb|ADE39557.1| ribonuclease, Rne/Rng family [Candidatus Puniceispirillum marinum IMCC1322] Length = 443 Score = 83.1 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 116/328 (35%), Gaps = 28/328 (8%) Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKE 234 K + + I R +K L RY +L+P +S G S++ ++ ++ Sbjct: 93 KPGDVRPITITAAPREDKAWQAVLGARLVSRYGILLPGSS-GVFRSKRFSSSDFGDAIES 151 Query: 235 IARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL 294 + + + P G I+R A ++ + ++ + L+ W +L + + Sbjct: 152 MIKAVL-PHDFGFIIRGAASALSLDAMEDAVKTLLHAWQMGAQLTSDQIDVARSP----- 205 Query: 295 IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ 354 R I D + + + D + ++ Sbjct: 206 --RVIHDAGTLAEQIARYAPDAELIKLPDPAASQHL-----------------AATLDEV 246 Query: 355 LDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 +D+ Q V LP G + +T AL +ID++S D + A E+ RQ+ Sbjct: 247 IDNALQARVPLPQGGCLWCQRTHALWAIDLDSAGYNNPKA-GDMLQSLAMVAIPEMTRQI 305 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 RLR + G + +D + K ++ + ++ D ++ + GLLEM Sbjct: 306 RLRAMGGALCIDLPRLGSKAG-KAFLTRFADACADDSRAPEILGFTRGGLLEMRVPYGEQ 364 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVALS 502 S+ + AG + +A S Sbjct: 365 SLADIMADRIAQTALAGLRLASHRIASS 392 >gi|331002177|ref|ZP_08325696.1| hypothetical protein HMPREF0491_00558 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411271|gb|EGG90687.1| hypothetical protein HMPREF0491_00558 [Lachnospiraceae oral taxon 107 str. F0167] Length = 338 Score = 82.7 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 1/212 (0%) Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLM 329 + D + AP ++Y I+D +I+ + Y +F Sbjct: 125 EISDKIMAKKNYIKAPSMLYAGSQDYIDIIKDRLKYCKFDIVTDIAEVYEGIVEFFSENN 184 Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQL-DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 + VR YED + L L + L GY+ I EAL +DVN+G+ Sbjct: 185 KKLLKRVRLYEDSMISLNKLYSIDTLFGELLSKKAWLKDGGYLYIESMEALTVVDVNTGK 244 Query: 389 STREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLK 448 + ++ L TNLEA +E ARQLRLR+++G+I++D I+ +K + +KE LK Sbjct: 245 NVQKKDANIVKLNTNLEAIKETARQLRLRNISGIIIIDLINTTDKSEIDLIYHTMKEYLK 304 Query: 449 KDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 +DR I+ L E++R++ + S+ E Sbjct: 305 EDRLNTVAIDITKLCLFEITRRKRKPSLEEIM 336 Score = 44.2 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 11/122 (9%) Query: 21 RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80 +N+ E E + + G+I++ KV ++ ++ AAFV+ N E Y+ Sbjct: 25 ENNKPNE--IEYIEENSLLGSIHIGKVKKIATNINAAFVEIEFN-------SERQMVYFD 75 Query: 81 IPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 ++ + L+ + D + + A ++ E ++ + Sbjct: 76 --MAELKYLIFADEKEHSKLYEGDDILIKISKLPIKNKLPGSTANLSGIESEISDKIMAK 133 Query: 141 AN 142 N Sbjct: 134 KN 135 >gi|329115667|ref|ZP_08244389.1| Ribonuclease [Acetobacter pomorum DM001] gi|326695095|gb|EGE46814.1| Ribonuclease [Acetobacter pomorum DM001] Length = 361 Score = 82.3 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 21/215 (9%) Query: 349 SGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAE 408 I +L + + LP I T AL++ID+++ + N +A Sbjct: 161 PEIMAACHALEDSSIDLPGNMQATITPTPALIAIDMDAPPVAGSRPKQTAQFAANRDALP 220 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 E+ Q+RLR+L+G IV+D M +K ++++ ++E+L+ D R + +S GL+E+ Sbjct: 221 ELLHQIRLRNLSGAIVIDPAGMAMRK-RQALQDVVQEALRADPLRPRCLGVSALGLIEIV 279 Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R RI S+ E G L+++ L Q I+ + + Sbjct: 280 RPRIHPSLPELLNSP----HG------------HALKALRTILAQAPTATILRGSIPFIQ 323 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 L Q + + G + + L F Sbjct: 324 A--LEQDPQAVADCVQLRGKHLALKADPAL--PDF 354 Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA-----AFVDYGG 63 A+ E R+ V +D+ + + + GNIY+A+V QA AFVD G Sbjct: 8 ATFPGEMRLAVTKDDTLLDYALWRPATPDLVGNIYVARVAA-----QAAFMGGAFVDLGH 62 Query: 64 NRHGFLP 70 GFL Sbjct: 63 GLQGFLS 69 >gi|16126580|ref|NP_421144.1| hypothetical protein CC_2341 [Caulobacter crescentus CB15] gi|221235362|ref|YP_002517799.1| ribonuclease, CafA family [Caulobacter crescentus NA1000] gi|13423868|gb|AAK24312.1| hypothetical protein CC_2341 [Caulobacter crescentus CB15] gi|220964535|gb|ACL95891.1| ribonuclease, CafA family [Caulobacter crescentus NA1000] Length = 353 Score = 80.8 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 13/209 (6%) Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 T +LP G + + T AL +IDV+ G + + A N+ A AR LRL Sbjct: 155 DALATVFSLPGGGDIAVEPTRALTAIDVDLG-ARDGADSKRAARLANMAAINVAARVLRL 213 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 + LAG+I+ D + + +++ + + D V +G IS FG LEM R + Sbjct: 214 KGLAGIIIFDLV--GRGHDAQALTTAARNAFAPDNPGVGIGPISKFGTLEMIVPRRAPPI 271 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 L+ + VA + R++E + H V + Sbjct: 272 LDRLLTRDGDAE-------PRYVARRLARALEREGRADPGGRLTAHCAPAVAEAFQAELD 324 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYI 565 + E R G V + F + Sbjct: 325 QGVAE---RLGRRFVVEAAPAWPVERFEV 350 >gi|295690490|ref|YP_003594183.1| RNA-binding protein AU-1/Ribonuclease E/G [Caulobacter segnis ATCC 21756] gi|295432393|gb|ADG11565.1| RNA-binding protein AU-1/Ribonuclease E/G [Caulobacter segnis ATCC 21756] Length = 348 Score = 79.6 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 18/218 (8%) Query: 347 FRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEA 406 +E T LP G + + T AL ++DV+ G + + A Q N+ A Sbjct: 140 ALQAVEEAEADALATVFALPGGGDIAVEPTRALTAVDVDLG-AREASDSKRAARQANMAA 198 Query: 407 AEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLE 466 AR LRL+ L G+IV D + + +++ + + D V VGAIS FG LE Sbjct: 199 LSVAARVLRLKGLGGIIVFDLV--GRGHDGQALTTAARNAFSADNPGVGVGAISKFGTLE 256 Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 M R +L+ G + A + R++E + Sbjct: 257 MIVPRRAPPILDRLLTP------TGA-PNPRHQARRLARALEREGRAQGGARLTARCSPA 309 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVV-----IGIELA 559 V + + A + + R G + + Sbjct: 310 VAEAFVAELDAGVAD---RLGRRFAIESMTNWPDDRME 344 >gi|319651717|ref|ZP_08005843.1| hypothetical protein HMPREF1013_02455 [Bacillus sp. 2_A_57_CT2] gi|317396536|gb|EFV77248.1| hypothetical protein HMPREF1013_02455 [Bacillus sp. 2_A_57_CT2] Length = 232 Score = 78.9 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 5 MLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGN 64 ML+ E R L+D RVE+L + ++ G+IYL V +V P L AAFV+ G + Sbjct: 3 MLVVNYASRERRFAHLKDKRVEKLFIDQPKQRSSVGDIYLGTVAKVMPGLNAAFVEIGED 62 Query: 65 RHGFLP 70 + GF+ Sbjct: 63 QSGFIH 68 >gi|209544281|ref|YP_002276510.1| putative ribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209531958|gb|ACI51895.1| putative ribonuclease [Gluconacetobacter diazotrophicus PAl 5] Length = 368 Score = 78.9 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408 E +L V LP I T ALV+ID++ G ++ + + TA N +A Sbjct: 161 ETEAACAALADPVVALPGGMRASITPTPALVAIDMDGGGASTDRRAKQTAQFAANRDALP 220 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 + Q+RLR+L+G IV+D + +K +++ + ++ +L +D R + + GL E+ Sbjct: 221 ALLHQIRLRNLSGAIVLDVAGLAIRK-RQALRETIEAALAQDPLRPRFLGFTALGLAEIL 279 Query: 469 RQRIRSSVLESTT 481 R RIR + E + Sbjct: 280 RTRIRPPLHEMLS 292 Score = 41.5 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M ++L AS E R+ V D + + + G+++ + P+L F+D Sbjct: 1 MTTRILA-ASAPGEIRIAVTDDTGLRDYALWRPGRPDGVGDLHRGRAGARMPALGGTFID 59 Query: 61 YGGNRHGFLP 70 GFLP Sbjct: 60 LADGTAGFLP 69 >gi|162147232|ref|YP_001601693.1| ribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|161785809|emb|CAP55380.1| putative ribonuclease [Gluconacetobacter diazotrophicus PAl 5] Length = 363 Score = 78.9 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAE 408 E +L V LP I T ALV+ID++ G ++ + + TA N +A Sbjct: 156 ETEAACAALADPVVALPGGMRASITPTPALVAIDMDGGGASTDRRAKQTAQFAANRDALP 215 Query: 409 EIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 + Q+RLR+L+G IV+D + +K +++ + ++ +L +D R + + GL E+ Sbjct: 216 ALLHQIRLRNLSGAIVLDVAGLAIRK-RQALRETIEAALAQDPLRPRFLGFTALGLAEIL 274 Query: 469 RQRIRSSVLESTT 481 R RIR + E + Sbjct: 275 RTRIRPPLHEMLS 287 >gi|148261673|ref|YP_001235800.1| ribonuclease G and E-like protein [Acidiphilium cryptum JF-5] gi|326405166|ref|YP_004285248.1| RNA-binding protein [Acidiphilium multivorum AIU301] gi|146403354|gb|ABQ31881.1| Ribonuclease G and E-like protein [Acidiphilium cryptum JF-5] gi|325052028|dbj|BAJ82366.1| RNA-binding protein [Acidiphilium multivorum AIU301] Length = 290 Score = 78.1 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 2/127 (1%) Query: 353 VQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTAL-QTNLEAAEEIA 411 ++ +L + LP + T AL +ID+++G +T E + A + N E+A Sbjct: 162 EEIAALAEPVFPLPQGARGTVCPTPALTAIDIDAGAATAERGDKHGAQLRLNRAIIPELA 221 Query: 412 RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQR 471 RQ+RLR+LAG I+VDF M+ + L +L +D R ++ S G E+SR R Sbjct: 222 RQIRLRNLAGAILVDFAGMKPAA-RPKLAPDLAAALARDPLRPRLLGFSALGFAEISRPR 280 Query: 472 IRSSVLE 478 IR + E Sbjct: 281 IRPPLHE 287 >gi|322647016|gb|EFY43517.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 93 Score = 77.3 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%) Query: 476 VLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK 535 + C C G G +++ +V I+R + Y + +V+ V L ++ Sbjct: 1 MEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEE 60 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYI 565 + E E G + V + + F + Sbjct: 61 SHALAEVEIFVGKQVKVQVEPLYNQEQFDV 90 >gi|213859803|ref|ZP_03385507.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 78 Score = 77.3 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 45/78 (57%) Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 +LEMSRQR+ S+ ES+ VC C G G +R S++LSILR +EE L+ + Sbjct: 1 MLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV 60 Query: 524 HSDVVLYLLNQKRATIVE 541 + YLLN+KR+ + Sbjct: 61 PVPIASYLLNEKRSAVNA 78 >gi|205374317|ref|ZP_03227115.1| ribonuclease G [Bacillus coahuilensis m4-4] Length = 84 Score = 76.9 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 +++++A + R + D ++E + G++Y A V +V LQAAFV++G Sbjct: 2 KELIVNAKGRD-KRWALREDGMLQEFHTRQGTHQSKVGSVYYAVVEKVVSGLQAAFVNFG 60 Query: 63 GNRHGFLPFLEIHP 76 ++ FL ++ Sbjct: 61 EDKRAFLSKEDVAS 74 >gi|315498217|ref|YP_004087021.1| RNA-binding protein au-1/ribonuclease e/g [Asticcacaulis excentricus CB 48] gi|315416229|gb|ADU12870.1| RNA-binding protein AU-1/Ribonuclease E/G [Asticcacaulis excentricus CB 48] Length = 336 Score = 75.4 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 22/229 (9%) Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + +K ++E E Q Q LP GY+ I T AL++ Sbjct: 116 MERLKQQARRLIDPQVRFEPAEDPDALDIAEAQ---ATQPSFDLPGGGYLSIEATRALIA 172 Query: 382 IDVNSGRSTRE--HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 D++ GR+ H A + N A EE+ R+LRL +LAGL+VVD I K N + Sbjct: 173 CDIDMGRAGEGMIHTPRQAAKRLNEVAVEELVRRLRLSNLAGLVVVDLI--GNKHNGEKL 230 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 ++ + + + G I+ FG LE SR +E + Sbjct: 231 TGLVQSAFAAEGRAIACGPITRFGTLEFSRPWGAQPHME---------------ETPLRA 275 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 A +L + + V + + ++ R V Sbjct: 276 ARRLLWRAVAEARSDVGGRLRLRAPGPVADQVRQCLKDSLDPLTPRLSV 324 >gi|329851099|ref|ZP_08265856.1| ribonuclease E/G family protein [Asticcacaulis biprosthecum C19] gi|328839945|gb|EGF89517.1| ribonuclease E/G family protein [Asticcacaulis biprosthecum C19] Length = 338 Score = 73.5 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 343 HPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR--EHCIEDTAL 400 F R I+ ++ Q LP GY+ I T ALV+ DV++ +T Sbjct: 136 MEAFDREAIDTAEEAARQPSGDLPGGGYLHIEPTRALVACDVDTSGATETGMASSHTAGR 195 Query: 401 QTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAIS 460 N A +I R+LRL LAGLIVVD I + + L + + R+ V I Sbjct: 196 ACNEAAVRDIGRRLRLSALAGLIVVDLIGKRHDGDR--LRTLLLQGFGAEAPRLAVAPIG 253 Query: 461 NFGLLEMSRQR 471 FG LE +R Sbjct: 254 KFGTLEFTRPW 264 >gi|197105656|ref|YP_002131033.1| hypothetical protein PHZ_c2193 [Phenylobacterium zucineum HLK1] gi|196479076|gb|ACG78604.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 371 Score = 72.7 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 75/211 (35%), Gaps = 14/211 (6%) Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 + LP G + I T AL +IDV+ G + Q NL A E AR LRL Sbjct: 174 QALEVLHPLPGGGALAIEPTRALTAIDVDLGERK-GADAKRVTRQANLAALAEAARLLRL 232 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 + L G++V+D + N ++ + + D V +G + FG +E+S R + Sbjct: 233 KGLGGIVVIDLVGRGHDGN--ALMTAARAAFGPDNPGVAIGPVGRFGTMEISLPRRQRPT 290 Query: 477 LESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 E + S ++A ++R ++ DV + Sbjct: 291 AELLCRDDGA-------LSDRTLAQRLIRELQREGEADRGGRFTGLCSPDVAA----GAQ 339 Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEK 567 +V G ++ F + + Sbjct: 340 PLLVRLAEAMGARFSIAAEAGRPRDRFEVRR 370 >gi|218754177|ref|ZP_03532973.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503] Length = 78 Score = 72.7 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 22/42 (52%) Query: 15 TRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA 56 T++ VL D V E S + GNIYL V V PS++A Sbjct: 36 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEA 77 >gi|58039468|ref|YP_191432.1| hypothetical protein GOX1004 [Gluconobacter oxydans 621H] gi|58001882|gb|AAW60776.1| Hypothetical protein GOX1004 [Gluconobacter oxydans 621H] Length = 347 Score = 72.3 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 28/207 (13%) Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 +E DSL E L I T ALV+ID++S + N+ A E+ Sbjct: 160 LEADFDSLGSPEADLGLLTASIF-PTPALVAIDLDSTGAPDFKG--------NIAAFPEL 210 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 ARQ+RLR+L+G I+VD ++ +K ++ L+E+L D + V + GLLE++R Sbjct: 211 ARQIRLRNLSGTILVDPAGVKTRK-RPALVPFLREALAGDPLKPDVLGATPSGLLELTRP 269 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R R + E + ALSILR++ + Sbjct: 270 RRRPPLHELLSSP-------------HGQALSILRTILRENR--PGQTLTASIGLVRA-- 312 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIE 557 L + ++ +R +++V+ Sbjct: 313 -LENDPDALADFISRRARPLDLVLDPN 338 >gi|46206125|ref|ZP_00047679.2| COG1530: Ribonucleases G and E [Magnetospirillum magnetotacticum MS-1] Length = 207 Score = 71.5 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 85/115 (73%), Positives = 98/115 (85%) Query: 160 VPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETI 219 P+ ++R Y IQEVIK RQI+LVQ+VKEERG KGAA+TTYLSLAGRYSVLMPNT +G I Sbjct: 92 RPRAYRRHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGI 151 Query: 220 SRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDN 274 SRKIT+ DRK LKE+ L+VP GMG+ILRTAGASRTK EIKRDFEYLMRLW++ Sbjct: 152 SRKITSAADRKRLKEVVADLDVPEGMGIILRTAGASRTKPEIKRDFEYLMRLWES 206 >gi|103487398|ref|YP_616959.1| ribonuclease [Sphingopyxis alaskensis RB2256] gi|98977475|gb|ABF53626.1| ribonuclease [Sphingopyxis alaskensis RB2256] Length = 330 Score = 71.5 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 27/206 (13%) Query: 351 IEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 ++ +T + G + ++ T A+V ID++ AL A E Sbjct: 143 GWSEMIDCVRTGHWPFAGGALWVDATPAMVLIDIDGEG---------DALALAKTGAVEA 193 Query: 411 ARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQ 470 A +R + G I +DF + + R+++ + +L R V + FG +++ R+ Sbjct: 194 AAVIRCCGIGGSIGIDFPSLPGRAERRAIDAAIDAALPPPFERTAV---NGFGFMQIIRR 250 Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R R S++E + A +LR E + A + + V+ + Sbjct: 251 RDRPSLIEQVRLD-----------PVRTDAALLLRRAERAV---GAGVLTLTARGAVIDH 296 Query: 531 LLNQKRATIVEYEARFGVSINVVIGI 556 + + I + E R G I +V Sbjct: 297 IA-ARPGWIAQLEQRCGRPIRLVADP 321 >gi|167945682|ref|ZP_02532756.1| Ribonuclease E and G [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 125 Score = 70.8 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 59/126 (46%), Positives = 83/126 (65%), Gaps = 1/126 (0%) Query: 184 IVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPA 243 + KEERGNKGAA+TT++SLAGRY VLMPN + +SR+I + L+E LE+P Sbjct: 1 MEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRAE-LREAMSTLEIPD 59 Query: 244 GMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLY 303 GMG+I+RTAG + E++ D +YL++LW + + A P L+Y+E N+I R+IRD Sbjct: 60 GMGLIVRTAGIGKNAEELQWDLDYLIQLWQAIEKSATAKPGPFLIYQESNIIIRSIRDYL 119 Query: 304 CKDISE 309 DI E Sbjct: 120 RADIGE 125 >gi|269467843|gb|EEZ79589.1| hypothetical protein Sup05_0911 [uncultured SUP05 cluster bacterium] Length = 180 Score = 69.6 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 64/180 (35%) Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPV 571 + + + DV+ YLLN+KR I E + + I ++ + F I K Sbjct: 1 ASKQTERLTIQSSVDVITYLLNEKRQDIARLENKHEIKITLLPNPYMQFPNFIINKQKGD 60 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + ++ S Q + + ++ A+ S + + ++ + + + + Sbjct: 61 KKSQHRSYQGISKPQYNIAENGLTSKAEEPAINVNRPSSRIPKKEMSLFEKIKSALFGTK 120 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + + ++R ++ + + + +N + + ++ + T D Sbjct: 121 KAKPNKQRTNQNNRNKNRNKNRNRNRNRSQNKGQNKNQKPQQSSTAKQKPKTSSSTNKKD 180 >gi|11467784|ref|NP_050835.1| ribonuclease E [Nephroselmis olivacea] gi|59798598|sp|Q9TL10|RNE_NEPOL RecName: Full=Ribonuclease E homolog; Short=RNase E gi|5880713|gb|AAD54806.1|AF137379_29 ribonuclease E [Nephroselmis olivacea] Length = 375 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 107/300 (35%), Gaps = 15/300 (5%) Query: 177 RQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIA 236 +LVQIV++ K V+ +++L V+ P S + I L Sbjct: 87 GDFVLVQIVQDGNHAKVHLVSGHIALTTSRLVVWPGLSSKDWIFSHQIGQKINNYL--HV 144 Query: 237 RGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIK 296 R L IL T K + E+ + ++ E + Sbjct: 145 RKLVSYMRRDQILCTGPQRWMKE--QYALEHQWENFVLEFIEQPTGISYLTSMTEK-FVS 201 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 + + +S I+ + ++ M M ++ ++ L Sbjct: 202 PVCAEWFQHPLSVWIIGCNL---QIRESMTKWMITHVPHKSRH-IEITTLDAWKNWYNLH 257 Query: 357 SL--HQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 Q ++ L S G +II TE S D+NSG N EA IA+Q+ Sbjct: 258 RAAIVQPQIPLRSGGTMIIEFTEIGWSFDINSGIGLEIGSKTCA----NEEAIYAIAQQI 313 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 LR + G I++DFI + + R + L++D +++ +IS GL+ + R R Sbjct: 314 LLRSMHGFILIDFIGDIDLEKLRVNLIQFTSLLEQDSYHIRIISISADGLVCVIRHRRSK 373 >gi|56551908|ref|YP_162747.1| hypothetical protein ZMO1012 [Zymomonas mobilis subsp. mobilis ZM4] gi|56543482|gb|AAV89636.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 337 Score = 65.4 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 27/189 (14%) Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G + + T AL D++ + + ++ T E A+ L L D+ G I +D Sbjct: 160 GGRLRMALTPALTLFDIDGHLGSLDLALKGT---------EATAKALILFDIGGSIGIDI 210 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 + K + + V + + L R V + FG L++ RQ+ R S+ E Sbjct: 211 PGLSGKSDRQKVAECFDQHLPPPFERTGV---NGFGFLQIIRQKKRPSLPEQIAAY---- 263 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 A +LR A I+ V+ L N+ + Sbjct: 264 -------PIEHEARQLLRQ---ACRAKGAGKRILTASHFVIDCL-NRHPDWLEALARESA 312 Query: 548 VSINVVIGI 556 I + Sbjct: 313 AEIILKADP 321 >gi|260752536|ref|YP_003225429.1| hypothetical protein Za10_0293 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551899|gb|ACV74845.1| hypothetical protein Za10_0293 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 337 Score = 65.4 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 27/189 (14%) Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G + + T AL D++ + + ++ T E A+ L L D+ G I +D Sbjct: 160 GGRLRMALTPALTLFDIDGHLGSLDLALKGT---------EATAKALTLFDIGGSIGIDI 210 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 + K + + V + L + L R V + FG L++ RQ+ R S+ E Sbjct: 211 PGLSGKSDRQKVAECLDQHLPPPFERTGV---NGFGFLQIIRQKKRPSLPEQIAAY---- 263 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 A +LR A I+ V+ L N+ + Sbjct: 264 -------PIEHEARQLLRQ---ACRAKGAGKRILTASHFVIDCL-NRHPDWLEALARESA 312 Query: 548 VSINVVIGI 556 I + Sbjct: 313 AEIILKADP 321 >gi|85707922|ref|ZP_01038988.1| ribonuclease [Erythrobacter sp. NAP1] gi|85689456|gb|EAQ29459.1| ribonuclease [Erythrobacter sp. NAP1] Length = 329 Score = 65.0 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 31/240 (12%) Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 D K + + + D F E S + G V+ + T A+ I Sbjct: 111 DPEKTAGETRTKDLFVLGDSVSQFEMGDWEEVWHSASSGTIAFA-GGEVLCSVTPAMTVI 169 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 D++ + L A IA+ LR D+ G I +DF +E K + R+V++ Sbjct: 170 DIDG---------DLPPRDLALAAVPAIAKALRWFDIGGNIGIDFPTLEAKADRRAVDEA 220 Query: 443 LKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 L+++L R ++ FG +++ + S+L T IR Sbjct: 221 LEDALADWSHERTS---MNGFGFVQLVARLEGPSLLHRFATSRTALCARYAIRVAE---- 273 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 A ++ H + + K I + E R G + + LA + Sbjct: 274 ----------RASGAGVTLLRVHPALAAKI---KPDWITDVERRTGRPLRIETQPGLALE 320 >gi|58700240|ref|ZP_00374721.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58533241|gb|EAL57759.1| ribonuclease, Rne/Rng family protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 179 Score = 64.6 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 1/153 (0%) Query: 219 ISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVREL 278 +SR+I + RK LKEI + +P G+I+RT G+ + K EI++D+ YL LW ++++ Sbjct: 1 MSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQKN 60 Query: 279 ALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQ 338 A + P L+Y E ++I R++RD D E+IVSG++ + + + + R Sbjct: 61 AFSVNVPSLIYNEADVIMRSVRDFCS-DGIEVIVSGKEAFEAVRQYANNALKGSKLRYRL 119 Query: 339 YEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYV 371 Y PIF GIE Q+ L+ V LPS G + Sbjct: 120 YRGYAPIFTYYGIEDQISELYSNRVELPSGGSL 152 >gi|257066801|ref|YP_003153057.1| ribonuclease G and E-like protein [Anaerococcus prevotii DSM 20548] gi|256798681|gb|ACV29336.1| ribonuclease G and E-like protein [Anaerococcus prevotii DSM 20548] Length = 307 Score = 61.5 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL 416 L Q + +II++ E + IDVNS + + N+E + I L+ Sbjct: 180 ELIQEKRPTYGDLSLIIDELETMTVIDVNSNSKKSTNNKDKFLENINMELIDPILYNLKA 239 Query: 417 RDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSS 475 R++ G++++DF+ +N +E+ +++ K ++ S GL EM+ +R + Sbjct: 240 RNIGGMVLIDFLR---NENKEKIEESMRKKSKDYDLECEIFGFSPMGLFEMTIKRRGAR 295 >gi|283798980|ref|ZP_06348133.1| ribonuclease G [Clostridium sp. M62/1] gi|291073258|gb|EFE10622.1| ribonuclease G [Clostridium sp. M62/1] Length = 80 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%) Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 G G +++ +V I+R + Y + +V+ V L ++ + E E G Sbjct: 1 GRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHALAEVEIFVGK 60 Query: 549 SINVVIGIELADKLFYI 565 + V + + F + Sbjct: 61 QVKVQVEPLYNQEQFDV 77 >gi|149185949|ref|ZP_01864264.1| ribonuclease [Erythrobacter sp. SD-21] gi|148830510|gb|EDL48946.1| ribonuclease [Erythrobacter sp. SD-21] Length = 315 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 30/197 (15%) Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425 G ++ T A+ +D++ L A +A LR DL G I + Sbjct: 138 FDGGSLLFAVTPAMTLVDIDGA---------LDPRTLALAAVGPLAEALRQFDLGGSIGI 188 Query: 426 DFIDMEEKKNNRSVEKKLKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 DF +E K + ++V+ L+E+L R A++ FG +++ + S+L Sbjct: 189 DFPTLEAKADRKAVDTMLEEALTGWPHERT---AMNGFGFVQIVARLEGPSLLHRFATSR 245 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544 T IR V A +++ H + L K I E E Sbjct: 246 TGMAARIAIRRAEMV--------------EGAGVTLLNVHPALKAKL---KPDWITEVER 288 Query: 545 RFGVSINVVIGIELADK 561 R G + + LA + Sbjct: 289 RTGRPLRIETDPGLAIE 305 >gi|323706725|ref|ZP_08118214.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum LX-11] gi|323533927|gb|EGB23789.1| ribonuclease, Rne/Rng family [Thermoanaerobacterium xylanolyticum LX-11] Length = 48 Score = 60.8 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVT 48 ++L D S +V L D + E E K+ I GNIY KV Sbjct: 2 KRILFDISDKF-YQVAYLEDGLLIEYHVEHSDKRSIVGNIYKGKVK 46 >gi|153941155|ref|YP_001389869.1| cell wall-associated hydrolase [Clostridium botulinum F str. Langeland] gi|152937051|gb|ABS42549.1| cell wall-associated hydrolase [Clostridium botulinum F str. Langeland] Length = 798 Score = 60.4 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 21/199 (10%), Positives = 51/199 (25%), Gaps = 5/199 (2%) Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 I ++Y ++ + + V N+K+ ++ E + Sbjct: 495 NQIATQDKKYGVKENNVTVDNKSAEAVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKVT 554 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + ++ + + + + K E + EA K+ + Sbjct: 555 EE--TQRKEAEETQRKAAEEAQRKAAEETQRKAAEEAQRKEAEKTQRKAA---EETQRKE 609 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 +EES + +R+ + + Q + E Sbjct: 610 AEESQRKAAEEAQRKEAEEAQRKAAEEAQRKEAEEAQRKAAEEAQRKEAEEAQRKEAEAE 669 Query: 681 NGAHGFTENYDVSIPPVST 699 E +VS +T Sbjct: 670 ASKSQQKEQSNVSEKAPAT 688 >gi|317496736|ref|ZP_07955066.1| hypothetical protein HMPREF0996_00045 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895748|gb|EFV17900.1| hypothetical protein HMPREF0996_00045 [Lachnospiraceae bacterium 5_1_63FAA] Length = 132 Score = 60.0 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 19 VLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 +L+D E SE K GNIY+ V V ++ AFV++ + GFL H Y Sbjct: 19 LLKDGHPVEFQCVSEKNKVDIGNIYIGVVKNVVKNINGAFVEFDQDEIGFLSMR--HRQY 76 Query: 79 YQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESI 138 + + L++ A + + D S + I+N + E+ Sbjct: 77 ----KAGDEVLVQIKKEATEEKRPMLSDQIELTGEYLVLTSDKLSVGISNKIHQKEKNRN 132 >gi|291231503|ref|XP_002735704.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 3906 Score = 60.0 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 74/699 (10%), Positives = 195/699 (27%), Gaps = 107/699 (15%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEE-----ESIIS 140 ++ LL E A + A + + + A Q+ +E + Sbjct: 2783 QEKLLAELQKAYAEEMEKAANNEARKSEMDAEMEARMRALNLANKQKVDEALDSLNKKNA 2842 Query: 141 ANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYL 200 N D+ N++D + K I+ + + L +E ++ L Sbjct: 2843 QNKDMRKNMKDRMKARKDRKRDKKSLPSNIKPGTEEGKEYLETANTQEDADREREEQALL 2902 Query: 201 SLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIE 260 +A + ++ + + + ++ + + + Sbjct: 2903 KIADEVMAEERQRAYWAALNGLMEDSNKTQEERDKIMADYDKNSERIQNKFDAQKQ---- 2958 Query: 261 IKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYRE 320 K+ E + RL R + + E N K+ + + + E+ + + Sbjct: 2959 -KQQDELMARLAARKRMREELTTDESVHKELNNASKQVEKQMQKQVELEVQQKEVENKAQ 3017 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 + + ++ + I + + + L + + L Y + + Sbjct: 3018 KDLDDEESQETEKINREIVDEKNRIIAKKDAAFEKEMLLKRKQ-LSDDEYQKLLEKHR-- 3074 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 +E+ R +D E+++ +S++ Sbjct: 3075 ---------------------------QEMERLAA-----------AMDQEKERQKKSLQ 3096 Query: 441 KKLKESLKKD----RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 ++ E KK R + Q G M R++ + + + G S Sbjct: 3097 ERFAERKKKMAEHLRKKHQAEMEKELGQQHMEREKKIEKEMRGKERPAIDSELQGEDVSA 3156 Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDVV--------------LYLLNQKRATIVEY 542 +V +LR + ++ + LL +R +++ Sbjct: 3157 ENVIYRVLRQRHIKETVNQNEKMKHERNAAIADARNKMEEARQSERDELLEAQRQELMDL 3216 Query: 543 ---------EARFGVSINVVIGIELADKLFYI---EKGSPVQALV---------NTGHKV 581 E +++ + F ++ + V + + Sbjct: 3217 IANAGDMTEEELADKKDDLLRQHKTQLMEFDKVTGQRVEQAEKDVLPGLDVKQAHEKLAL 3276 Query: 582 GSDSQAPSYDKNIECVWQDEALL-----------------PIPKSESLEDIQDNIVSEES 624 D + +E ++ K ++L++ D I +E+ Sbjct: 3277 KEKQLQELADAMRDISHGEEDMVRRYSEEAAKAAEDAKKFRETKMKTLKEQMDQIKAEKK 3336 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +RR+ + + + D + + D I+ + + + + L + Sbjct: 3337 KQDDERRRKMQEQLKNIEDEFEKQRLRDEQRIKERDLEREQLRQQQREEREKRLRSDLDK 3396 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E+ I M++ +++ +K R+K Sbjct: 3397 ETDESKKKKILADHEAAMKAWDANQKKEQEKQSRATRKK 3435 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 71/647 (10%), Positives = 169/647 (26%), Gaps = 49/647 (7%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 RQ D D+T P+D ++ + QE + A + Sbjct: 2738 RQKKDLHRKQVSEAKSEGLKDEDVPDMTDPSDAQQDKEFRLLALQQEKLLAELQKAYAEE 2797 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNR-QILLVQIVKEERGNKGAAVTTYLSLAG 204 + + + E + R + K + L + K+ NK + Sbjct: 2798 MEKAANNEARKSEMDAEMEARMRALNLANKQKVDEALDSLNKKNAQNKDMRKNMKDRMKA 2857 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 R K S + K E A E + ++I + Sbjct: 2858 RKDR---KRDKKSLPSNIKPGTEEGKEYLETANTQEDAD-------REREEQALLKIADE 2907 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDF 324 R L + EE + + + D + ++ + Sbjct: 2908 VMAEERQRAYWAALNGLMEDSNKTQEERD---KIMADYDKNSERIQNKFDAQKQKQQDEL 2964 Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 M L D + Q++ Q +V L + +A +D Sbjct: 2965 MARLAARKRMREELTTDESVHKELNNASKQVEKQMQKQVEL--EVQQKEVENKAQKDLDD 3022 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 + T + E + + A ++ A + + + D +K+ + +E+ Sbjct: 3023 EESQETEKINREIVDEKNRIIAKKDAAFEKEMLLKRKQLSDDEYQKLLEKHRQEMERL-- 3080 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSIL 504 + D+ + E ++ ++ E K+ + + + L Sbjct: 3081 -AAAMDQEK------------ERQKKSLQERFAERKKKMAEH-----LRKKHQAEMEKEL 3122 Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK---RATIVEYEARFGVSINVVIGIELADK 561 + + + L + I + + V ++ Sbjct: 3123 GQQHMEREKKIEKEMRGKERPAIDSELQGEDVSAENVIYRVLRQRHIKETVNQNEKMKH- 3181 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 E+ + + N + + + + + A E L D +D+++ Sbjct: 3182 ----ERNAAIADARNKMEEARQSERDELLEAQRQELMDLIANAGDMTEEELADKKDDLLR 3237 Query: 622 EESTGVIRKRRRRRRRRRPATDH-----HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + T ++ + +R A ++ + + + D + S Sbjct: 3238 QHKTQLMEFDKVTGQRVEQAEKDVLPGLDVKQAHEKLALKEKQLQELADAMRDISHGEED 3297 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + D + + KK + +RR+ Sbjct: 3298 MVRRYSEEAAKAAEDAKKFRETKMKTLKEQMDQIKAEKKKQDDERRR 3344 >gi|322647835|gb|EFY44312.1| ribonuclease G [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 69 Score = 59.6 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%) Query: 332 YARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTR 391 + Y PIF +E ++ + +V L S GY+II+QTEA+ ++D+N+G Sbjct: 1 MTSKLEHYSGHQPIFDLYDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 60 Query: 392 EHCIEDTAL 400 ++DT Sbjct: 61 HRNLDDTIF 69 >gi|227499940|ref|ZP_03930033.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227218049|gb|EEI83322.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 309 Score = 59.6 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 72/171 (42%), Gaps = 3/171 (1%) Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 + +I + + + SY + E ++ L + Sbjct: 133 TRLIEEEKFFPTPKILYKNSFLASYLSKNKDLEVREVNIEDFNPYKEVLKLIKDPRPSLG 192 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 +II+Q E L IDVNS ++ + NL+ + I L++R++ G++++DF Sbjct: 193 DSSLIIDQLETLTVIDVNSSAEKSKNNKDKFLENINLKLIDLIIYNLKIRNIGGMVLIDF 252 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLE 478 + K+ +E+ ++ ++ ++ S GL EM+ +R +S+++ Sbjct: 253 LR---NKDKEKIEESFRQKAEEKGLECEIYGFSLMGLFEMTIKRRGASLID 300 >gi|71980588|ref|NP_001020985.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] gi|82583720|sp|O01761|UNC89_CAEEL RecName: Full=Muscle M-line assembly protein unc-89; AltName: Full=Uncoordinated protein 89 gi|31746683|gb|AAP68958.1| Uncoordinated protein 89, isoform b, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 8081 Score = 57.7 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + K S + + + + +S ++ E+ Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683 +K + + S S + P + + E Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E TPE ++ P K+ Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831 >gi|294010251|ref|YP_003543711.1| putative ribonuclease [Sphingobium japonicum UT26S] gi|292673581|dbj|BAI95099.1| putative ribonuclease [Sphingobium japonicum UT26S] Length = 329 Score = 57.7 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 28/225 (12%) Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 ++ F G ++ E+ + I T A++ IDV+ Sbjct: 125 PVIPCPAHEEDRFEAHGWSELMEEAISGEIGTEEAA-LRIFPTPAMILIDVDG------- 176 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 + + A+ A+ +R L G I +D M K ++ + L R Sbjct: 177 --SLPPAKLGPKGAKLAAQAIRRLGLTGSIGIDLPTMNNKDERAVASAQIDKYLPLPFER 234 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 V + FG +++ R+R R +++E + AL++LR E Sbjct: 235 TAV---NGFGFVQIIRRRERMNLMELLRAD-----------PVETAALALLRRAER---H 277 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + ++ L I R G +I + L Sbjct: 278 GNGGPATIAAAPPIIDRLHKAT-GWIETLARRRGGAIGLKADAAL 321 >gi|325479027|gb|EGC82128.1| ribonuclease, Rne/Rng family [Anaerococcus prevotii ACS-065-V-Col13] Length = 309 Score = 57.7 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 4/151 (2%) Query: 330 PSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRS 389 + I S + L+ + + + +II++ E L IDVN+ Sbjct: 156 NYLEKQGPIEVREGNINDLSEFKDCLNLIKDRKPSYKEY-SLIIDELETLTVIDVNTDSK 214 Query: 390 TREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKK 449 ++ + NL+ + I L+LR++ G++V+DF+ KN VE+ ++ +++ Sbjct: 215 KSKNNKDKFLENINLDLIDFIVYNLKLRNIGGMVVIDFLR---NKNKEVVEESFRKKVEE 271 Query: 450 DRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 ++ + GL E++ +R S+ + Sbjct: 272 MNLEAEIFGFTAMGLFELTIKRRGDSLRKDL 302 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVD 60 M + + ID E+ V + D R+ E+ F + GNIY KVT +L A F++ Sbjct: 1 MTDFIFID---KEKKLVAKIEDVRIVEVKF----YDSLIGNIYRGKVTNKIDALNAYFIE 53 Query: 61 Y 61 Y Sbjct: 54 Y 54 >gi|255527002|ref|ZP_05393894.1| ribonuclease G [Clostridium carboxidivorans P7] gi|255509312|gb|EET85660.1| ribonuclease G [Clostridium carboxidivorans P7] Length = 61 Score = 57.3 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYG 62 + I+ R+ + ++ ++E E E + G IY V + P+++ AFVD G Sbjct: 2 KDIFIER-QNNLLRIAIKENDILKECFIEEETGEPYPGEIYKGVVKNIVPAIKCAFVDIG 60 Query: 63 G 63 Sbjct: 61 Q 61 >gi|71980604|ref|NP_001020990.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] gi|54607254|gb|AAV34801.1| Uncoordinated protein 89, isoform g, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 7122 Score = 57.3 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + K S + + + + +S ++ E+ Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683 +K + + S S + P + + E Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E TPE ++ P K+ Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831 >gi|307293563|ref|ZP_07573407.1| putative ribonuclease [Sphingobium chlorophenolicum L-1] gi|306879714|gb|EFN10931.1| putative ribonuclease [Sphingobium chlorophenolicum L-1] Length = 329 Score = 57.3 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 27/193 (13%) Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425 + I T A++ IDV+ + + A+ A+ +R L G I + Sbjct: 156 TEEAALRIFPTPAMILIDVDG---------SMPPAKLGPKGAKLAAQAIRRMGLTGSIGI 206 Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485 D M K ++ + L R V + FG +++ R+R R +++E Sbjct: 207 DLPTMNNKDERAVASAQIDKYLPLPFERTAV---NGFGFIQIIRRRERMNLMELLRAD-- 261 Query: 486 YCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR 545 + AL++LR E + ++ L I + R Sbjct: 262 ---------PVETAALALLRRAER---HGNGGPATITAAPAIIDRLHKAT-DWIEQLAKR 308 Query: 546 FGVSINVVIGIEL 558 G +I + L Sbjct: 309 RGGAIGLKADAAL 321 >gi|1160355|gb|AAB00542.1| UNC-89 [Caenorhabditis elegans] Length = 6632 Score = 57.3 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + K S + + + + +S ++ E+ Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683 +K + + S S + P + + E Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E TPE ++ P K+ Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831 >gi|71980586|ref|NP_001020984.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] gi|20198774|gb|AAB54132.2| Uncoordinated protein 89, isoform a, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 6632 Score = 57.3 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 5/153 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + K S + + + + +S ++ E+ Sbjct: 1679 KTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-----LLENGA 683 +K + + S S + P + + E Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSP 1798 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E TPE ++ P K+ Sbjct: 1799 EKVEEKPASPTKKEKTPEKSAAEELKSPTKKEK 1831 >gi|325117285|emb|CBZ52837.1| GA26239, related [Neospora caninum Liverpool] Length = 4152 Score = 56.9 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 14/223 (6%) Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF------GVSINVVIG 555 IL E L +I + V L +R + ++ G + ++ Sbjct: 3066 DILEDTELILNLEKTKSIATEVSAKVALAKKTGER--LDTISEQYRPVARRGAVLFFLLS 3123 Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 FY+ A+++ ++ S + + + V S Sbjct: 3124 ELFKMHTFYVYSMEAFVAVIHRAIDSVANKPPESAEPDGDEVGGAAEEASGEVDASP--- 3180 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 E ++++ RR R + + D + DD+ + Sbjct: 3181 PSAEEEAEQKAGETRKKKARRSR-EGDEGDERSEDGDEEHEEVAADDTPSEASDAEADCR 3239 Query: 676 HNLLENGAHGFTENYDVSIPP--VSTPEMESSNSSSDPIVKKT 716 + D + P T + + ++ P +T Sbjct: 3240 EGAAGAEEKSSETDEDTTRPAEGEETRDAREAATAGQPEDGET 3282 >gi|212695699|ref|ZP_03303827.1| hypothetical protein ANHYDRO_00219 [Anaerococcus hydrogenalis DSM 7454] gi|212677372|gb|EEB36979.1| hypothetical protein ANHYDRO_00219 [Anaerococcus hydrogenalis DSM 7454] Length = 308 Score = 56.9 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 96/256 (37%), Gaps = 8/256 (3%) Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + LK + + +G I++ + +F + + R Sbjct: 55 DKDKKAFLKSNKKFKIGDSLIGQIVKEEFDDK-LANFSANFRIENQDYFLYRFKNKGYPI 113 Query: 285 PHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHP 344 ++ + + D+ I E + ++ + Y Sbjct: 114 LKKGRKKNPKTYKDLLDIKNSLIDEENFTPSPKLLKSYN---EFDLYLEENKGYYCQEVD 170 Query: 345 IFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNL 404 I I L ++ ++ +IIN+ E L +DVNS + +D + N Sbjct: 171 IRNNKIIYDSLKTIGDEKI-YKGELSIIINKLETLCFVDVNSSKKRSTMDKDDFYYKVNE 229 Query: 405 EAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL 464 + + I L+LR++ G+IV+DF ++ N + VE + E++KK + +N GL Sbjct: 230 DLIDFIFYNLKLRNIGGMIVIDF--LKSSYNYKLVE-IINENIKKYFKIYTIYGFTNMGL 286 Query: 465 LEMSRQRIRSSVLEST 480 E+S +R S+++ Sbjct: 287 FEISIKREGESLIKKL 302 >gi|255028011|ref|ZP_05299997.1| hypothetical protein LmonocytFSL_19325 [Listeria monocytogenes FSL J2-003] Length = 159 Score = 56.9 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 22 DNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDY 78 D+ + +++ +K G+IY + +++ ++AAFVD G N GF+ +I Y Sbjct: 1 DDLLIDIEIVRPSEKVQVGDIYYGFIQKIDRKVEAAFVDLGNNNKGFIHLKDIPESY 57 >gi|302379404|ref|ZP_07267891.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna ACS-171-V-Col3] gi|302312749|gb|EFK94743.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna ACS-171-V-Col3] Length = 1398 Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 3/155 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + G K D++ P DK E D K E + E+ Sbjct: 1069 EDNKKPEIKKPEGEKKPGDTKKPEDDKKPEAKKPDAKKPEAEKKPEDEKKPGDNKKPETK 1128 Query: 626 GVIRKRR---RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 K+ ++ + P + G + + + ++ N + Sbjct: 1129 KPDVKKPEDNKKPEAKNPEGEKKPEGEKKPGDNKKPENNKKPEVNNPGKTTNPSNNKKQP 1188 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + DV P TPE ++ P V+ + Sbjct: 1189 EKTPEKTPDVKKPEAKTPEKTPEKNAKKPSVQNKK 1223 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/167 (8%), Positives = 37/167 (22%), Gaps = 14/167 (8%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 F I++ + KV S + + E ++ ED Sbjct: 983 EAAKEGDEFIIQQQEKGKKDSPRISKVTQKSDKKQNPEKKPEAKKPEGEKKPGDTKKPED 1042 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 ++ + ++ ++P D+ + + + +P Sbjct: 1043 NKNPETKKPDVQKPEAEKKPGDNKKPE-DNKKPEIKKPEGEKKPGDTKKPEDDKKPEAKK 1101 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + P KK K Sbjct: 1102 PDAKKPEAEKK-------------PEDEKKPGDNKKPETKKPDVKKP 1135 Score = 39.2 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 38/154 (24%), Gaps = 3/154 (1%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + K S E + + + + + +D + Sbjct: 953 VTKVSKNGDRDAASLSTVVGEDGKWSVDLKEAAKEGDEFIIQQQEKGKKDSPRISKVTQK 1012 Query: 625 TGVIRKRRRRRRRRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + + ++ ++P + D D + + D E N +N Sbjct: 1013 SDKKQNPEKKPEAKKPEGEKKPGDTKKPEDNKNPETKKPDVQKPEAEKKPGDNKKPEDNK 1072 Query: 683 AHGFTENYDVSIP-PVSTPEMESSNSSSDPIVKK 715 + P PE + + P KK Sbjct: 1073 KPEIKKPEGEKKPGDTKKPEDDKKPEAKKPDAKK 1106 >gi|226330542|ref|ZP_03806060.1| hypothetical protein PROPEN_04460 [Proteus penneri ATCC 35198] gi|225201337|gb|EEG83691.1| hypothetical protein PROPEN_04460 [Proteus penneri ATCC 35198] Length = 52 Score = 56.5 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIK 39 +MLI+A+ EE RV ++ R+ +LD ES +Q K Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKK 38 >gi|296284360|ref|ZP_06862358.1| ribonuclease [Citromicrobium bathyomarinum JL354] Length = 320 Score = 56.5 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 29/197 (14%) Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425 + G +I++ A+ ID++ S R+ + + LR DLAG I + Sbjct: 143 FAGGSLIVSPAPAMTVIDIDGDLSPRDLALAAVPALADT---------LRRFDLAGSIGI 193 Query: 426 DFIDMEEKKNNRSVEKKLKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 DF + EK R+V+ L+E+L R A++ FG +++ + R S+L Sbjct: 194 DFPTLAEKAQRRAVDDALEEALSGWPHERT---AMNGFGFVQLVARLERPSLLHRLHHN- 249 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544 S+ A +LR E L + +++ H V L A + E Sbjct: 250 ----------RTSAAARMLLRRGE--LAEGIGPRLLLRAHPAVADRLS---HAWLAELAR 294 Query: 545 RFGVSINVVIGIELADK 561 R G + V LA + Sbjct: 295 RSGRKVEVERYPALALE 311 >gi|311265324|ref|XP_003130599.1| PREDICTED: LOW QUALITY PROTEIN: protein ELYS-like [Sus scrofa] Length = 2374 Score = 56.5 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 46/370 (12%), Positives = 116/370 (31%), Gaps = 31/370 (8%) Query: 363 VTLPSRGYVIINQTEALV--SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLA 420 L + + +T A+ +N S+R + A +E + + ++ Sbjct: 1819 TKLAKTPFKTVQETSAVTINVSQINDMISSRTRKKRRVQDMSVKSAHQEESADVATPEML 1878 Query: 421 GLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 GL + M++ + + + + + D+ Q + + R R + + + T Sbjct: 1879 GLSI-----MKKTRKTKEISGAFESASSDDKGISQ-NQQTPQNSVTPRRGRRKKEINQDT 1932 Query: 481 TKVCTYCK-------GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 ++ + G R +SS L + + ++ T + + N Sbjct: 1933 SEDINSVEQELEATPGRELRRVKSSQLLESVTEESSFRKDVKLSSVTKRTPKRIKKSVEN 1992 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 Q+ E + ++ + + K + S Q +N Sbjct: 1993 QES-----VEVINDLKVSKIASPSRST-----RKLRSACLETSESTAGESTEQQLPLQRN 2042 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 ++ + + + + Q +E T ++R R R+ P+ D V Sbjct: 2043 RRVRKREGSASDVVEDSKFDSSQRKPPAEFDTPATPRKRGRPRKTNPSEDVESKAV---- 2098 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 ++ + T + ++G + + V + E+ + SS Sbjct: 2099 --KGARSPETREGLNIQRRSTRNTPAKSGNTEVGKLALETSVFVPSEELATPVSSKKKPT 2156 Query: 714 KKTRWWKRRK 723 K+T +++ Sbjct: 2157 KRTENQSQKR 2166 >gi|87199078|ref|YP_496335.1| ribonuclease [Novosphingobium aromaticivorans DSM 12444] gi|87134759|gb|ABD25501.1| ribonuclease [Novosphingobium aromaticivorans DSM 12444] Length = 332 Score = 56.5 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 27/226 (11%) Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 VR F G + ++ E+ G ++++ T A+ IDV+ Sbjct: 123 DHVRILPATDRTFVECGWDELVEQAQSGEIPFA-GGSLLVSPTPAMTLIDVDG------- 174 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 Q L A IA L D+ G + +DF ++++K+ ++++ L+ +L + R Sbjct: 175 --FGQPAQLALAAVPAIAGALMRLDIGGNVGIDFPTVQDRKDRQAIDAALEAALAEAGWR 232 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 + ++ FG +++ + R S++ ++ A +LR E Sbjct: 233 GERTGMNGFGFVQLVSRLERPSLV-----------ARYARNPAAASARILLRQAERVA-- 279 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 ++ L + + E R G + + LA Sbjct: 280 EPGALLLCANP----RTLDAMRPDWLEELARRTGRVVRLAPDPALA 321 >gi|84994972|ref|XP_952208.1| DNA helicase (SGS1 homologue) [Theileria annulata strain Ankara] gi|65302369|emb|CAI74476.1| DNA helicase (SGS1 homologue), putative [Theileria annulata] Length = 875 Score = 56.1 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 35/147 (23%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + + T + + PS + + PK E +++ Sbjct: 726 PNYRDNLKFMSTIYIPTKKDTTNRKKRPSAPRPKKEPKDKAPKTLGPKVEKKRPKKESPK 785 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + T ++ R+P D SS P + Sbjct: 786 EGDDTPTKPRKSSGGTPRKPRKKSEDTPTKPKKSSGDTPRKPRKKSSDTPPKPRRKSNSS 845 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNS 707 + S P +++ +S Sbjct: 846 PRKPKLNSDDSPSEPKRKRLKLQKPSS 872 Score = 46.1 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%) Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 K + P PK E + + + K+R ++ + D S Sbjct: 743 KKDTTNRKKRPSAPRPKKEPKDKAPKTLGP-----KVEKKRPKKESPKEGDDTPTKPRKS 797 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS---------TPEM 702 + + S D +P + + PP P++ Sbjct: 798 SGGTPRKPRKKSEDTPTKPKKSSGDTPRKP------RKKSSDTPPKPRRKSNSSPRKPKL 851 Query: 703 ESSNSSSDPIVKKTRWWKR 721 S +S S+P K+ + K Sbjct: 852 NSDDSPSEPKRKRLKLQKP 870 >gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum DSM 5159] gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum DSM 5159] Length = 790 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 29 DFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPD 77 + E + G I+ +V + PS AFV+ + GFL EI P+ Sbjct: 623 EIERLTRVPEVGEIFYGRVVTIIPS--GAFVEILPGKDGFLHISEIAPE 669 >gi|194753654|ref|XP_001959125.1| GF12728 [Drosophila ananassae] gi|190620423|gb|EDV35947.1| GF12728 [Drosophila ananassae] Length = 1572 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 80/301 (26%), Gaps = 28/301 (9%) Query: 437 RSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQ 496 +++ + D + + F E+ + + + + ++ Y + + Sbjct: 1168 KNLTRHFLSCCSSDSTNTNIRN-TKF---ELLLRDVGKQLPSNIYELINYIEAN----AI 1219 Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 A L+ + A + V+ ++ I+ + + + Sbjct: 1220 DEEAQQHLKK--RKVQAERAKVLRETRMIPKVIMVIEDFNKHIILLSKKAKAQNRLTDYL 1277 Query: 557 ELADK-LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 F I+ S + A E D P+ E+ Sbjct: 1278 HFGTMRDFDIK--STDLKAAIERSISDGRNIAVDESHAEEDEDDDAQSCGYPEEVEDEED 1335 Query: 616 QDNIVSEESTGVIRKRRRR-----------RRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + +RRRR +R+R P + D S + S Sbjct: 1336 EPVQDEPVQVAEKSQRRRRVLSSDSEESQPKRKRGPKPAEKQKNLEEDPPSTSKSVR-SK 1394 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV---KKTRWWKR 721 P+ + +G + + V ++ SD KKTR + Sbjct: 1395 KDKKNPARTSQDKGSSDGEEPPSTSKTVRSKKDKKKPTQAPQEESDGDEQPAKKTRASRT 1454 Query: 722 R 722 R Sbjct: 1455 R 1455 >gi|213865433|ref|ZP_03387552.1| ribonuclease E [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 68 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 3 NKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAK 46 +MLI+A+ EE RV ++ R+ +LD E++ ++ + +I AK Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIETDTSRKKRTSI-KAK 44 >gi|85373322|ref|YP_457384.1| ribonuclease [Erythrobacter litoralis HTCC2594] gi|84786405|gb|ABC62587.1| ribonuclease [Erythrobacter litoralis HTCC2594] Length = 317 Score = 55.4 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 30/192 (15%) Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G ++ + T A+ +D++ S RE + AR LR DL G I +DF Sbjct: 143 GGSLLFSTTPAMTLVDIDGDGSPRELALAAIPAL---------ARALRQFDLGGSIGIDF 193 Query: 428 IDMEEKKNNRSVEKKLKESLKK-DRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 + +K ++V+ L E+L R A++ FG +++ + S+L Sbjct: 194 PTIADKAGRKAVDAALGEALADWPHERT---AMNGFGFVQIVARLEGPSLLHRMATS--- 247 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 + A LR E A ++ H + L K + E E R Sbjct: 248 --------RIGAAARMALRRGELV---EGAGVTLLTVHPALKAKL---KPEWLAELEKRT 293 Query: 547 GVSINVVIGIEL 558 G + L Sbjct: 294 GRPARLETDPGL 305 >gi|308464252|ref|XP_003094394.1| hypothetical protein CRE_06997 [Caenorhabditis remanei] gi|308247816|gb|EFO91768.1| hypothetical protein CRE_06997 [Caenorhabditis remanei] Length = 550 Score = 55.0 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 33/144 (22%), Gaps = 5/144 (3%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 H + S +P + A P + + + +E +K +++ Sbjct: 64 HYRPAASSSPPRIPRRIDQQKPAAAPPPEQKDPQKPAPPEKKDQEKPAAEKKDQQKPAAA 123 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 P Q +P+ + E D P Sbjct: 124 PPPEQKDPQKPAPPEKKDQEKPAAEKKDQQKPAAAPPPEQKDPQKPAPPEKKDQEKPAAE 183 Query: 699 TPEMESS-----NSSSDPIVKKTR 717 + + P KK + Sbjct: 184 KKDKQKPVPTEKKDQKKPEEKKDQ 207 >gi|94497799|ref|ZP_01304365.1| ribonuclease [Sphingomonas sp. SKA58] gi|94422688|gb|EAT07723.1| ribonuclease [Sphingomonas sp. SKA58] Length = 329 Score = 55.0 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 28/226 (12%) Query: 333 ARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTRE 392 +V G ++ EV + + T A++ IDV+ Sbjct: 124 VPVVPCPAHEEDRLEAHGWSELMEEAMSGEVG-TEAAALRLYLTPAMLLIDVDG------ 176 Query: 393 HCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRA 452 Q + A+ A+ +R L+G I +D M K ++ + L Sbjct: 177 ---SLPPAQLGPKGAKLAAQTIRRMGLSGSIGIDLPTMNNKDERMIAAAQIDKYLPLPFE 233 Query: 453 RVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R V + FG L++ R+R R++++E + AL++LR E Sbjct: 234 RTAV---NGFGFLQIIRRRERANLMELLLDNV-----------VLTAALALLRRAER--- 276 Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 T + V+ LL Q+ I R G + + L Sbjct: 277 HGTGGAATLIAAPAVID-LLRQRPDWIDLLARRRGGEVGLRADPAL 321 >gi|226330543|ref|ZP_03806061.1| hypothetical protein PROPEN_04461 [Proteus penneri ATCC 35198] gi|225201338|gb|EEG83692.1| hypothetical protein PROPEN_04461 [Proteus penneri ATCC 35198] Length = 108 Score = 55.0 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%) Query: 210 MPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM 269 MPN + ISR+I + LKE LE+P GMG+I+RTAG ++ +++D Y + Sbjct: 1 MPNNPRAGGISRRIEGEDRTE-LKEALSSLEIPDGMGLIVRTAGVGKSAEALQQDLSYRL 59 Query: 270 RLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSG 314 R WD +++ A N AP L+++E N+I RA RD DI EI++ Sbjct: 60 RHWDAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDN 104 >gi|227484629|ref|ZP_03914945.1| ribonuclease G and E [Anaerococcus lactolyticus ATCC 51172] gi|227237349|gb|EEI87364.1| ribonuclease G and E [Anaerococcus lactolyticus ATCC 51172] Length = 308 Score = 54.6 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 5/171 (2%) Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEV--QLDSLHQTEVTL 365 + + E+ + + + + + F L + Sbjct: 130 EKERLINEEKFFPSPKLLVENSSRDFYLASYRDYKIRDFDVRNSREFSNLKEELKKSELG 189 Query: 366 PSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVV 425 +II++ + L IDVN+ + + +D L NLE + I L+LR++ G++V+ Sbjct: 190 YKDLSIIIDELKTLTVIDVNTAKRKSKLNKKDFLLNVNLELIDFIVYNLKLRNIGGMVVI 249 Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSV 476 DF+ + K+ + + +++ +K + +V S GL E+S +R S+ Sbjct: 250 DFLRTDGKE---ELREAFEDAARKYKLEAEVFGFSQMGLFEISIKRRGDSL 297 >gi|17552208|ref|NP_498392.1| THO Complex (transcription factor/nuclear export) subunit family member (thoc-2) [Caenorhabditis elegans] gi|14573810|gb|AAB47593.3| Tho complex (transcription factor/nuclear export) subunit protein 2 [Caenorhabditis elegans] Length = 1437 Score = 54.2 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 36/139 (25%), Gaps = 1/139 (0%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + + PS + D S+ E E G +K Sbjct: 1243 SKESKKEPTTEDGEVKTPSPPPAKKTRIVDRLKRSDEPSKKDEKESPKDTESE-KGEGKK 1301 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 RR R + + + + + ++ + E + + + E Sbjct: 1302 RRERSKDKETGKEKRLEKDNKEREKDKERKRENGENQKEQKILKDQKQKSKPSDEKLEVA 1361 Query: 691 DVSIPPVSTPEMESSNSSS 709 ++P + + S Sbjct: 1362 GPALPDPVPKKDDKKGSRK 1380 >gi|195014854|ref|XP_001984090.1| GH15196 [Drosophila grimshawi] gi|193897572|gb|EDV96438.1| GH15196 [Drosophila grimshawi] Length = 1895 Score = 54.2 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 41/166 (24%), Gaps = 4/166 (2%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + K Q + ++ SD K ++ + + Sbjct: 319 GNPQHKSCKPKESQLPASNSNETASDGAQREQGKRSRDTPREREENHRNRFREKRSERSR 378 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 S+ + R R R + + + + + F+ Y E S+ Sbjct: 379 ESKTASSRDRPRERSRERYKEKKRERSNEKQRARSKEGNRSRERRFERYKEKSEHFKAKP 438 Query: 679 LENGAHGF---TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E ++ + E+ DP K + R Sbjct: 439 RERSREKRLDSSKEKQLDRSNEKRRELSKER-QRDPNSSKDKTTSR 483 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 11/152 (7%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + H+ + + + + + E ++ ++ Sbjct: 353 RSRDTPREREENHRNRFREKRSERSRESKTASSRDRPRERSRERYKEKKRERSNEKQRAR 412 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R RR + + + DS ++ + Sbjct: 413 SKEGNRSRERRFERYKEKSEHFKAKPRERSREKRLDSSKEKQL---DRSNEKRRELSKER 469 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + S ++ + S++ ++ R Sbjct: 470 QRDPNSSKDKTTSRSTDKLASTAAKDERRDRT 501 >gi|302695909|ref|XP_003037633.1| hypothetical protein SCHCODRAFT_104612 [Schizophyllum commune H4-8] gi|300111330|gb|EFJ02731.1| hypothetical protein SCHCODRAFT_104612 [Schizophyllum commune H4-8] Length = 764 Score = 54.2 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 63/227 (27%), Gaps = 10/227 (4%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA------TIVEYEARFGVSINVVIGIE 557 LR + + + + V L++ R + + + + + Sbjct: 537 LRKIIALIPKMRDAYENLEDSVHVPTIKLDEDRQVLDDSLFLDDIYDKMEATFREISDAF 596 Query: 558 LA-DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 L D+ F PV+ + + P + +E S++ D Sbjct: 597 LNCDEEFVWLPPPPVKVIPPPRFASEARMLGPEVPP---VIDSEETTQEDNGSDADADGP 653 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + + G + R R+ + + + + ++ + + Sbjct: 654 FSRLDTPTPGPRTRSRARQAKASANSSRDTSTDTQRGARKRDTRETGTERKPPRKRSRPS 713 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + ++PP + + K + +R++ Sbjct: 714 PEPKRRSDRLAAKSKEALPPDGPVASRTRSGGRSKSPKDSGSRQRKR 760 >gi|70699860|gb|AAZ06829.1| ribonuclease G [Microbacterium arborescens] Length = 291 Score = 54.2 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 4 KMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRV 50 +++I S ++ VL DN + E + GN+YL +V V Sbjct: 245 RVMIVRSKNGRIQIAVLEDNVLVEHYVARNQDASLIGNVYLGRVQNV 291 >gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 790 Score = 54.2 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 3/161 (1%) Query: 30 FESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQAL 89 E K G+I+ +V + PS FV+ + GFL E+ P Y D + Sbjct: 625 IERMTKVPEVGDIFFGRVKTIIPS--GCFVEILPGKDGFLHISELEP-YRVNSVEDVVQV 681 Query: 90 LKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNV 149 +E N+ T + +D E A ++ Sbjct: 682 GQELNVVVTGIRPDGKINLSRKALLTSDADQREPASAGAGRGGRRQDDRGGRGQRGGDRD 741 Query: 150 EDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190 G + + R + + L++ ++ R Sbjct: 742 RRGGGDRDQRGRQPEARDQRPKPRPDDGGQALMRRPRDSRT 782 >gi|325849902|ref|ZP_08170941.1| ribonuclease, Rne/Rng family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479926|gb|EGC83009.1| ribonuclease, Rne/Rng family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 308 Score = 53.8 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAG 421 E +IIN+ E L +DVNS + +D + N + + I L+LR++ G Sbjct: 187 EKIYKGELSIIINKLETLCFVDVNSSKKRSTMDKDDFYYKVNEDLIDFIFYNLKLRNIGG 246 Query: 422 LIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 +IV+DF ++ N + VEK + LKK + +N GL E+S +R S+++ Sbjct: 247 MIVIDF--LKSTLNEKLVEK-INGCLKKYFKTYTIYGFTNMGLFEISIKREGESLIKKL 302 >gi|56964861|ref|YP_176592.1| beta-N-acetylglucosaminidase [Bacillus clausii KSM-K16] gi|56911104|dbj|BAD65631.1| beta-N-acetylglucosaminidase [Bacillus clausii KSM-K16] Length = 1398 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 44/164 (26%), Gaps = 2/164 (1%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I V+ + + S+ + + E + SE + Sbjct: 1074 IDENDTVPHSDEANDQTVEEDDHVADENEQASETTDTENDAENEESNLPASEEAPSEEND 1133 Query: 614 DIQDNI-VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ++ + + + D + ++ Q D+ EP Sbjct: 1134 STDESSLEEPQEPETDPSTDEQEPETDASADEQEPETDANTDE-QEPETDASTDEQEPET 1192 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + E T+ + + + +++S+D +T Sbjct: 1193 DASADEQEPKTDASTDEQEPETDASTDEQEPETDASADEQEPET 1236 >gi|149020534|gb|EDL78339.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Rattus norvegicus] Length = 1503 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624 K P + + + K + A E E ++ EE Sbjct: 55 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 114 Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR RR+ R R + + + DD D +L Sbjct: 115 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 174 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 PP E E KK Sbjct: 175 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 209 >gi|20137608|sp|Q9Z330|DNMT1_RAT RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; AltName: Full=DNA MTase RnoIP; Short=M.RnoIP; AltName: Full=DNA methyltransferase I; AltName: Full=MCMT Length = 1622 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624 K P + + + K + A E E ++ EE Sbjct: 173 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 232 Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR RR+ R R + + + DD D +L Sbjct: 233 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 292 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 PP E E KK Sbjct: 293 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 327 >gi|214010196|ref|NP_445806.3| DNA (cytosine-5)-methyltransferase 1 [Rattus norvegicus] gi|149020535|gb|EDL78340.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_b [Rattus norvegicus] Length = 1621 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624 K P + + + K + A E E ++ EE Sbjct: 173 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 232 Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR RR+ R R + + + DD D +L Sbjct: 233 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 292 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 PP E E KK Sbjct: 293 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 327 >gi|149020536|gb|EDL78341.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_c [Rattus norvegicus] Length = 1634 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624 K P + + + K + A E E ++ EE Sbjct: 186 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 245 Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR RR+ R R + + + DD D +L Sbjct: 246 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 305 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 PP E E KK Sbjct: 306 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 340 >gi|4160670|dbj|BAA37118.1| DNA cytosine 5 methyltransferase [Rattus rattus] Length = 1622 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 6/155 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624 K P + + + K + A E E ++ EE Sbjct: 173 KRKPKEDSEKGNANESAAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 232 Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR RR+ R R + + + DD D +L Sbjct: 233 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 292 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 PP E E KK Sbjct: 293 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 327 >gi|288869942|ref|ZP_06112364.2| 1,4-alpha-glucan branching enzyme [Clostridium hathewayi DSM 13479] gi|288869027|gb|EFD01326.1| 1,4-alpha-glucan branching enzyme [Clostridium hathewayi DSM 13479] Length = 997 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 12/147 (8%), Positives = 34/147 (23%), Gaps = 1/147 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P + + E K + I+D + Sbjct: 831 KPGPQKTADKEPETGKITDKKPEAKKIEDKKTEPQKIADKRPEAKKIEDKKPETQKIADK 890 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + ++ ++P T A + I++ ++ + + + + + Sbjct: 891 KPEAKKIEDKKPET-RKIADKKPEAKKIEDKKPETQKIADKKPEAKKIEDKKPETQKIAD 949 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + P KK Sbjct: 950 KKPEAKKIEDKKPETQKITDKKPEAKK 976 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 35/158 (22%), Gaps = 1/158 (0%) Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 L E S + E K + I+D Sbjct: 800 LKAAEKKTEVKKTGLQRTAGKKNETEKSADKKPGPQKTADKEPETGKITDKKPEAKKIED 859 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + R ++ ++P T A + I++ ++ + + + Sbjct: 860 KKTEPQKIADKRPEAKKIEDKKPETQ-KIADKKPEAKKIEDKKPETRKIADKKPEAKKIE 918 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + + + P KK Sbjct: 919 DKKPETQKIADKKPEAKKIEDKKPETQKIADKKPEAKK 956 Score = 41.9 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 34/120 (28%), Gaps = 4/120 (3%) Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 +AL K ++ + + + ++ ++ A + G ++D Sbjct: 797 TKALKAAEKKTEVKKTGLQRTAGKKNETEKSADKKPGPQKTADKEPETGKITDKKPEAKK 856 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS----DPIVKK 715 I+D + +D T+ P E + + P KK Sbjct: 857 IEDKKTEPQKIADKRPEAKKIEDKKPETQKIADKKPEAKKIEDKKPETRKIADKKPEAKK 916 >gi|167647545|ref|YP_001685208.1| hypothetical protein Caul_3583 [Caulobacter sp. K31] gi|167349975|gb|ABZ72710.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 346 Score = 53.1 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 11/189 (5%) Query: 363 VTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGL 422 LP G V I T ALV+IDV+ G RE + A N+ A AR LRL+ LAGL Sbjct: 156 FALPGGGDVSIEATRALVAIDVDLGG--REGDSKKAARAANMAAFTTAARVLRLKGLAGL 213 Query: 423 IVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTK 482 +V D + + ++ + + D V +G IS FG LEM R +L+ Sbjct: 214 VVFDLV--GRGHDGPALTTAARNAFAIDNPGVGLGPISKFGALEMVVPRRTKPILDRLLD 271 Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 G S + AL ++R+ E + V A Sbjct: 272 E---SGG----LSARAGALRLVRAFEREGRADPGGKLAGRCGPAVAKAFAALDAALADRI 324 Query: 543 EARFGVSIN 551 RF +++ Sbjct: 325 GRRFTLAVV 333 >gi|256544884|ref|ZP_05472255.1| cytoplasmic axial filament protein [Anaerococcus vaginalis ATCC 51170] gi|256399383|gb|EEU12989.1| cytoplasmic axial filament protein [Anaerococcus vaginalis ATCC 51170] Length = 308 Score = 52.7 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 325 MKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDV 384 + I I + ++ + ++ +IIN E L IDV Sbjct: 151 YNEFDLYCEKNKDLELVELDIKNNKIISDSIKNIKEKKI-YKGDLSIIINDLETLCFIDV 209 Query: 385 NSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLK 444 NS + +D + N + + I L LR++ G++V+DF ++ KN + K+ Sbjct: 210 NSSKKKSTMDKDDFYYKVNEDLIDFIFYNLNLRNIGGMVVIDF--LKSSKN-DQLIDKIN 266 Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLEST 480 E++KK ++ +N GL E+S +R S+ + Sbjct: 267 ENIKKYFDTYEIYGFTNMGLFELSIKRRGESLYKKL 302 >gi|170056240|ref|XP_001863941.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876010|gb|EDS39393.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 643 Score = 52.3 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 39/158 (24%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + K + + + + + + + Q + T Sbjct: 475 ERQKDRKTERQKDRKTERQKDRETERQKDRKTERQKDRKTERQKDRKTERQKTEDRRQKT 534 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R++ RR++ + + D E + ++ Sbjct: 535 EDRRQKTEDRRQKTEDRRQKTEDRRQKTEDRRQKTERQKDTETERQKDRKTGIQKDRKTE 594 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ E + + +KT K RK Sbjct: 595 RQKDRKTERQKDRKTERQKDRKTERQKNRKTERLKERK 632 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 16/190 (8%), Positives = 48/190 (25%), Gaps = 1/190 (0%) Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 +R + E + + + + + + + ++ Sbjct: 435 ERQKDRKTERQKDRKTERQKDRKPERQKDRKTERQKDRKTERQKDRKTERQKDRKTERQK 494 Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDV 653 + + + + + + + E +R++ RR+ D Sbjct: 495 DRETERQKDRKTERQKDRKTERQKDRKTERQKTEDRRQKTEDRRQKTEDRRQKTEDRRQK 554 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + + E T ++ G ++ E + + Sbjct: 555 TEDRRQKTEDRRQKTERQKDTETERQKDRKTGIQKDRKTERQKDRKTERQKDRKTERQKD 614 Query: 714 KKTRWWKRRK 723 +KT K RK Sbjct: 615 RKTERQKNRK 624 Score = 46.9 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 14/165 (8%), Positives = 37/165 (22%), Gaps = 7/165 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN---IVSE 622 +K + + + D + +D ++ ++ + Sbjct: 477 QKDRKTERQKDRKTERQKDRETERQKDRKTERQKDRKTERQKDRKTERQKTEDRRQKTED 536 Query: 623 ESTGVIRKRRRRRRRRRPATDHH----DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +R++ RR+ D D ++ D Sbjct: 537 RRQKTEDRRQKTEDRRQKTEDRRQKTEDRRQKTERQKDTETERQKDRKTGIQKDRKTERQ 596 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + T ++ + K R RR+ Sbjct: 597 KDRKTERQKDRKTERQKDRKTERQKNRKTERLKERKPKRHKNRRQ 641 >gi|307172721|gb|EFN64027.1| Myosin light chain kinase, smooth muscle [Camponotus floridanus] Length = 7605 Score = 52.3 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 69/229 (30%), Gaps = 13/229 (5%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 +S+++ ++ + ++ L + + + E + V+ I E+ + Sbjct: 4110 KSIKDERIKKDEKEHKITQETE---SLKKHEDGKVKQIEKQEKVNATESIKDEIQESKKI 4166 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 IE +K + +K + Q K + + Sbjct: 4167 IETEKIKSEKNEQQNKENYEEINKMAEKQEQETVQKRKESDKSKKIEKDLNVKEETGKIK 4226 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R++ + + + ++ I+ + ++ + Y + ++I E Sbjct: 4227 LEEAKDIERKKVQAKEKEKADEIKKEQELKDIKEKVKEATEQYDKKNEIEKLQKKETDEI 4286 Query: 685 GFTENYDVSIPPVSTPEMESSNSS----------SDPIVKKTRWWKRRK 723 T+ + + E+ + D +KK + ++ Sbjct: 4287 DKTQQKEQEHVRIEKTEIVEKDHKIEVKEIKKQEEDKTIKKDGKEQEKE 4335 >gi|254418850|ref|ZP_05032574.1| S1 RNA binding domain protein [Brevundimonas sp. BAL3] gi|196185027|gb|EDX80003.1| S1 RNA binding domain protein [Brevundimonas sp. BAL3] Length = 346 Score = 51.9 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Query: 12 VEETRVVVLRDNRVEELDFESE-----HKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 ETR VLRD R L + H+ + + +VT + P L+ AFVD G Sbjct: 13 PGETRGAVLRDGRYTHLLIHRDGDLPQHRLGARS---VGRVTEINPGLRGAFVDLGAGAP 69 Query: 67 GFLPFL 72 FLPF Sbjct: 70 AFLPFH 75 Score = 46.1 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 356 DSLHQTEVTLPSRG-YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQL 414 + + S G + I +T AL+++D++ T + N + AR + Sbjct: 149 EEALASRHVFNSHGVDLAIERTRALIAVDIDHTAGT-GRDPKQARAAANRLGLNQAARLI 207 Query: 415 RLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRS 474 LR+ GLIVVD + E K + + G IS FGLL+MS R+ Sbjct: 208 SLRNWGGLIVVDLVGDAEDAAAG---DKAARAAFSHEPQAVFGPISRFGLLQMSLPWRRT 264 Query: 475 SVLESTTK 482 + E + Sbjct: 265 PIEEILFE 272 >gi|198458768|ref|XP_002138586.1| GA24859 [Drosophila pseudoobscura pseudoobscura] gi|198136459|gb|EDY69144.1| GA24859 [Drosophila pseudoobscura pseudoobscura] Length = 1483 Score = 51.9 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 56/220 (25%), Gaps = 12/220 (5%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-L 562 + A + V+ ++ I+ + + + L Sbjct: 1253 QHIKTRNVQAQRAKVLRETRLIPKVIMVIEDFNKHIILLSKKTKTFNRLTDYLHLGTMRD 1312 Query: 563 FYI---------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 F I E+ V D + + + +DEA I ++ + Sbjct: 1313 FDIKSTDLKAAIERSLTDTHEVAEDDCTTEDMEDIDHSNDPSNDEEDEAETEIIQAPNKR 1372 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRR--RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 Q ++ KR R ++ + + A + S+ ++ + + Sbjct: 1373 QRQRRAPISDTEESQPKRTRGQKTKVVQSAKPQSNDEQESNEEQLETIQTTKLRNRTKKR 1432 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 L N E + + ++ P Sbjct: 1433 QTKKSTRLSNEEESAEERGLTEQRTKDMRKSQERDTGVKP 1472 >gi|304319972|ref|YP_003853615.1| hypothetical protein PB2503_01977 [Parvularcula bermudensis HTCC2503] gi|303298875|gb|ADM08474.1| hypothetical protein PB2503_01977 [Parvularcula bermudensis HTCC2503] Length = 415 Score = 51.5 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 12/208 (5%) Query: 356 DSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLR 415 + + +P G + I +TEA ++D++ + + EA + R L Sbjct: 201 EEALRHRHIIPGGGALTIEETEAAFTVDLDLAQGA-GQSKAGAGSRLLAEAMRPLGRLLS 259 Query: 416 LRDLAGLIVVDFIDM---EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 L G I++D K + + LK RV V A++ G + R Sbjct: 260 LAGAGGQILIDAPRGAIAAPKIFRDQLTRALKPLG-----RVSVPAVTPEGCALVVAPRP 314 Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 R S L T+ G S S R++ L + + + L+ Sbjct: 315 RPSTLMKLTEPFGQGVVQGRRMSAPVARASAYRALAAALERNPTAQRRLVVAPRLAEGLV 374 Query: 533 NQK-RATIVEYEARFGVSINVVIGIELA 559 + A ++ R+G +++ Sbjct: 375 GEGPAAHLMR--ERYGPRFEILVDRTFE 400 >gi|302381051|ref|ZP_07269511.1| ribonuclease, Rne/Rng family [Finegoldia magna ACS-171-V-Col3] gi|302311098|gb|EFK93119.1| ribonuclease, Rne/Rng family [Finegoldia magna ACS-171-V-Col3] Length = 334 Score = 51.5 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 118/340 (34%), Gaps = 32/340 (9%) Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++E +I A D + F + +K +LVQ+ KE Sbjct: 22 GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKES 81 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 G+K TT +++ + K + + I Sbjct: 82 IGDKYPKFTTKITIETENLKYTNGD----------KLTFEGKQKYKDIDDFKQKYEFTGI 131 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 + + K + +++ +++ + P L+Y++ + K + I+ Sbjct: 132 VGENFFKQEKAQQEKEMNFILNNLRYIETEKKFLPIPKLLYKKNPVYKIIQEENVDYLIT 191 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 + + ++++ + + + I + + + L + Sbjct: 192 NDKIVYRQYKEIL--------------NVKFDENYNYNYDNLISRDIIDKNSEIIKLDNN 237 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 ++I +TEA+ +DVNS + + N +A ++I + + L+ + G+++VD + Sbjct: 238 AEIVIQKTEAMWVVDVNSSQMIMSEDYF---HELNTKALKKIHQMIYLKKMVGMVIVDCV 294 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 + +N+ + +K+ + + SN LLE + Sbjct: 295 R---EGDNKKLSDFIKDEFCEPN--INFHGFSNLNLLEFT 329 Score = 41.5 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 80/270 (29%), Gaps = 22/270 (8%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL---PFL-------EIHPDYYQIPFSD---- 85 GNIY+AK+T+ + L A F++Y + GFL F EI + D Sbjct: 29 GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKESIGDKYPK 88 Query: 86 ---RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 + + E+ + + E + + E+ Sbjct: 89 FTTKITIETENLKYTNGDKLTFEGKQKYKDIDDFKQKYEFTGIVGENFFKQEKAQQEKEM 148 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 N +++N+ ++ K + I + + I ++ + + Sbjct: 149 NFILNNLRYIETEKKFLPIPKLLYKKNPVYKIIQEENVDYLITNDKIVYRQYKEILNVKF 208 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 Y N + ISR I + + + + + + +S+ + Sbjct: 209 DENY-----NYNYDNLISRDIIDKNSEIIKLDNNAEIVIQKTEAMWVVDVNSSQMIMSED 263 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 E + + ++ +V + Sbjct: 264 YFHELNTKALKKIHQMIYLKKMVGMVIVDC 293 >gi|225389915|ref|ZP_03759639.1| hypothetical protein CLOSTASPAR_03665 [Clostridium asparagiforme DSM 15981] gi|225044026|gb|EEG54272.1| hypothetical protein CLOSTASPAR_03665 [Clostridium asparagiforme DSM 15981] Length = 899 Score = 51.5 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 55/199 (27%), Gaps = 15/199 (7%) Query: 533 NQKRATIVEYEARFGVSINVVIG---IELADK-------LFY---IEKGSPVQALVNTGH 579 ++ +E + + I+ + ++ D FY + + Sbjct: 254 GEENEIALEVGKEYKLPISFITDIPGDDMIDPVNERSQVDFYKAPLPDLEQNENKQEEVV 313 Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + S S + + DE+ P + E + E + Sbjct: 314 EDVSQSNPSLDESGPDNPTVDESEQDNPTVDESEQDNPPVDEPEQDNPSVDEPEQGNPPV 373 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT--ENYDVSIPPV 697 ++ + V S V + + N+ ++ G + + PPV Sbjct: 374 DESEESNPPVDEPEESNPPVDEPEENNPPVDEPEENNPPVDEPEQGNPPVDEPEEGNPPV 433 Query: 698 STPEMESSNSSSDPIVKKT 716 PE ++ KK+ Sbjct: 434 DEPEQDNEPEEKSGDYKKS 452 >gi|321467016|gb|EFX78008.1| hypothetical protein DAPPUDRAFT_105663 [Daphnia pulex] Length = 4511 Score = 51.1 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 76/280 (27%), Gaps = 6/280 (2%) Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 KES +KDR + + L E ++ E ++ + + + I Sbjct: 2227 KESGEKDRLQKETEEKDRL-LKEEEEKQRIQIESEEKDRLQKEAEEKDRLLKEEEEKRRI 2285 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + EE + +KR E E + + L + Sbjct: 2286 QKESEEKDRLQKEAEEKDRLLKE-----EEEKRRIQKESEEKDRLQKEAEEKDRLLKEEE 2340 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++ + K + ++ + Q E+ + E+ + EE Sbjct: 2341 EKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEE 2400 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 I+K + R + + D + + + + ++ LL+ Sbjct: 2401 EKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKETEEKDRLLKEKE 2460 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E E + +K R K + Sbjct: 2461 EKQRMQKESEEKDRLQKEAEEKDRLLKEEEEKRRIQKESE 2500 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 74/610 (12%), Positives = 181/610 (29%), Gaps = 35/610 (5%) Query: 80 QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 Q ++ L+E Q E + N+ L E + E E++ + Sbjct: 2147 QKEVEEKDQFLREEVNRQRLQEEAEEKDRIQKEAEENERLLRESEEKQHLQMEAEKDRL- 2205 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 + +K + +K + + + L++ +E++ + + Sbjct: 2206 --QKEAEEKDRLLKEEDEKQRIQKESGEKDRLQKETEEKDRLLKEEEEKQRIQIESEEKD 2263 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 + E + + + KE + R S K Sbjct: 2264 RLQKEAEEKDRLLKEEEEKRRIQKESEEKDRLQKEAEEKDRLLKEEEEKRRIQKESEEKD 2323 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 ++++ E RL E EE + +++ + E + Sbjct: 2324 RLQKEAEEKDRLLKEEEEKQRIQKES----EEKDRLQKEAEEKDRLLKEEEEKQRIQKES 2379 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 E KD ++ R++++ E+ I S + +L + + L + Sbjct: 2380 EEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKES 2439 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 D + T E + +E + RL+ A ++E++ R + Sbjct: 2440 EEKD-RLQKETEEKDRLLKEKEEKQRMQKESEEKDRLQKEAEE---KDRLLKEEEEKRRI 2495 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 + KES +KDR + + L E ++ E ++ + + + Sbjct: 2496 Q---KESEEKDRLQKETEEKDRL-LKEEEEKQRMQKESEEKDRLQKEAEEKDRLLKEEEE 2551 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA 559 I + +EE +K + E E + + + L Sbjct: 2552 KQRIQKELEEKNRLQKETE---------------EKDRLLKEEEEKQRIQKELEEKDCLQ 2596 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQ-----APSYDKNIECVWQDEALLPIPKSESLED 614 +L E+ + K + Q + E + +E L +++ + Sbjct: 2597 KELEEKERLQKEAEEKDLLLKEAEEKQHFLTKTDEIEGTKEDIEAEEKDLTKNETQKEVE 2656 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + ++ EE + + K + + ++ G ++ I++ + + + Sbjct: 2657 VTKRLLKEEESVQLPKESKEKESKQDQQQKEVEGSQIKNDEDKSRINEVEERAVSDKQLD 2716 Query: 675 NHNLLENGAH 684 + N + Sbjct: 2717 SCNTRLSDTK 2726 >gi|241761776|ref|ZP_04759862.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373690|gb|EER63250.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 337 Score = 51.1 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 27/189 (14%) Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 G + + T AL D++ + + ++ T E A+ + L + G I +D Sbjct: 160 GGRLRMALTPALTLFDIDGHLGSLDLALKGT---------EATAKAITLFGIGGSIGIDI 210 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 + K + + V + L + L R V + FG L++ RQ+ R S+ E Sbjct: 211 PGLSGKSDRQKVAECLDQHLPPPFERTGV---NGFGFLQIIRQKKRPSLPEQIAAY---- 263 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 A +LR A I+ V+ L N+ + Sbjct: 264 -------PIEHEARQLLRQ---ACRAKGAGKRILTASHFVIDCL-NRHPDWLEALARESA 312 Query: 548 VSINVVIGI 556 I + Sbjct: 313 AEIILKADP 321 >gi|315633769|ref|ZP_07889059.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter segnis ATCC 33393] gi|315477811|gb|EFU68553.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter segnis ATCC 33393] Length = 1520 Score = 51.1 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 20/221 (9%), Positives = 51/221 (23%), Gaps = 5/221 (2%) Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 I R L + + ++ + EA I + + Sbjct: 930 IFRLYNAKLENEKIEAERIAKEKEAARLAEEARQRELARLEAE---RIAKEKEEQARLEA 986 Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 I K L + + I K + + + Sbjct: 987 ERIAKEKEDARLAEEARQRELARLEAERIAKEKEEQARLEAERIAKEKEEARLAEEARQR 1046 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 E + +R + + + + + + + +E I + Sbjct: 1047 ELARLEAERIAKEKEEQARLEAERIAKEKEEARLAEEARQRELARLEAERIAKEKEEQAR 1106 Query: 683 --AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 A + + + + E + ++ I K+ R Sbjct: 1107 LEAERIAKEKEAARLAEEARQHELARLEAERIAKEKEEQAR 1147 >gi|82538841|ref|XP_723854.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23478292|gb|EAA15419.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 1166 Score = 51.1 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 45/334 (13%), Positives = 87/334 (26%), Gaps = 12/334 (3%) Query: 80 QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 QI DR E D D+ D D + E N ++ +E Sbjct: 505 QIKACDRDLQQSEFEKDGNDENDEKDEKDENDENDEKDENDENDEKDENDEKDENDEKKG 564 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 + N ++ E+ S + ++ + + E K ++ V + + + Sbjct: 565 NEKNGEINYSENTVHESNVEKNQQIETENTTNESGKAVNFTDIRNVVNKYISNKKLNEKH 624 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRT----AGAS 255 + + K + N K + T Sbjct: 625 NLKKRKEENDVNCKDKNIIYEKNQENKKINNEAKNEGFTMNGQNDNNYFYYTCNEQYSEK 684 Query: 256 RTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGE 315 + K +K +L + S + +LI I D S I Sbjct: 685 KKKKNVKNVKYMKKKLLKDHINFLNLSFPEYSGLIRASLILICIYIFSFLDTSRIYHYIR 744 Query: 316 KGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQ 375 + ++ R++R + + L S Y+I N Sbjct: 745 AQPFMKLYVVLNMLEILERLLRSLGKDLIDN--------MIRTFIRIINLRSYIYIIRNH 796 Query: 376 TEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 + + D N + E + T + N E Sbjct: 797 YNNMTNDDENFSNESLEGRRKKTYIINNSNILHE 830 >gi|169824060|ref|YP_001691671.1| ribonuclease G [Finegoldia magna ATCC 29328] gi|167830865|dbj|BAG07781.1| ribonucleases G [Finegoldia magna ATCC 29328] Length = 334 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 117/340 (34%), Gaps = 32/340 (9%) Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++E +I A D + F + +K +LVQ+ KE Sbjct: 22 GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKES 81 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 G+K TT +++ + K + + I Sbjct: 82 IGDKYPKFTTKITIETENLKYTNGD----------KLTFEGKQKYKDIDDFKQKYTFTGI 131 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 + + K + +++ +++ + P L+Y++ + K + I+ Sbjct: 132 VGENFFKQEKAQQEKEMNFILNNLHYIETEKKFLPIPKLLYKKNPVDKIIQEENVDYLIT 191 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 + + ++++ + + + I + + + L + Sbjct: 192 NDKIVYRQYKEIL--------------NVKFDENYNYNYDNLISRDIIDKNSEIIKLDNN 237 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 ++I +TEA+ +DVNS + + N +A ++I + + L+ + G+++VD + Sbjct: 238 AEIVIQKTEAMWVVDVNSSQMIVGENYF---HELNTKALKKIHQMMYLKKMVGMVIVDCV 294 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 + +N+ + +K + + SN LLE + Sbjct: 295 R---EGDNKKLSDFIKYEFCEPN--INFHGFSNLNLLEFT 329 Score = 43.0 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 90/270 (33%), Gaps = 22/270 (8%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL---PFL-EIHPDYYQIPFSDRQALLKESNI 95 GNIY+AK+T+ + L A F++Y + GFL F ++ P + ++++ + Sbjct: 29 GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTSFTQDLKPSDEILVQMTKESIGDKYPK 88 Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQ-------------ETEEESIISAN 142 T +++ + + ++ I +F Q + E+ Sbjct: 89 FTTKITIETENLKYTNGDKLTFEGKQKYKDIDDFKQKYTFTGIVGENFFKQEKAQQEKEM 148 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 N +++N+ ++ K + + I + + I ++ + + Sbjct: 149 NFILNNLHYIETEKKFLPIPKLLYKKNPVDKIIQEENVDYLITNDKIVYRQYKEILNVKF 208 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 Y N + ISR I + + + + + + +S+ + Sbjct: 209 DENY-----NYNYDNLISRDIIDKNSEIIKLDNNAEIVIQKTEAMWVVDVNSSQMIVGEN 263 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 E + + ++ +V + Sbjct: 264 YFHELNTKALKKIHQMMYLKKMVGMVIVDC 293 >gi|195499745|ref|XP_002097077.1| GE26021 [Drosophila yakuba] gi|194183178|gb|EDW96789.1| GE26021 [Drosophila yakuba] Length = 2709 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 22/207 (10%), Positives = 51/207 (24%), Gaps = 9/207 (4%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 E + A + + E + V + + + Sbjct: 858 ETESAEKKAEQPRLKKLPSTA-----ELEDRFNALERKMSVQKSSPSKNKKEPPD----E 908 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G S D +D K E+ E +++ Sbjct: 909 GESKSTKEPEELDEPGREIDKSSDSQTPIATKDPKDSDQKKPETKETTTSPSKTQDQKVK 968 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + + ++ D + S+ + V + + ++I N E+ Sbjct: 969 DKSPKSEESVEKQTSESKDDSQELETSTTKKVESNRKLSLEKGNNIVNEKREESPKKADK 1028 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVK 714 E + V ++ S+S K Sbjct: 1029 ETAETKNENVENESLKKSDSQKKEATK 1055 Score = 41.9 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 32/147 (21%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P+ S Q S + ++ ++ E + Sbjct: 809 PIDLKDEEPSGSSSKKQKDSEKTSKLHQAEEPESNTKETNQETETSDSKETESAEKKAEQ 868 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 R ++ D +A + + + E + E G + Sbjct: 869 PRLKKLPSTAELEDRFNALERKMSVQKSSPSKNKKEPPDEGESKSTKEPEELDEPGREID 928 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + P K+T Sbjct: 929 KSSDSQTPIATKDPKDSDQKKPETKET 955 >gi|171680121|ref|XP_001905006.1| hypothetical protein [Podospora anserina S mat+] gi|170939687|emb|CAP64913.1| unnamed protein product [Podospora anserina S mat+] Length = 1871 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 9/219 (4%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 LR + + A + +V L +K+ + + + + Sbjct: 710 LRELLKENQSLQATKEWLTEELEVATQKLEEKKQEREHLKEK-----ALSSNESSVTEPK 764 Query: 564 YIEKGSPVQALVNTGHKVGS-DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 +EK ++ P+ + +E + E + E L+ +++ + Sbjct: 765 DVEKPEEAVKTEAVAQPTEVLKTEEPAQAEAVEKAVEPETEAVEVEGEGLKTVEEGVKPV 824 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 E + + + + + + +EP + E Sbjct: 825 EEDVKPVEEDVKPDQGGVKPESEAVKAGEEGADTNQGGVKPTGEDVEPEKEGVESAKEKV 884 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E +V +TP+ E++NS S+ + K + K Sbjct: 885 DP---EKEEVKSAEEATPKQEAANSESEDVGKDAKVEKE 920 >gi|269217804|ref|ZP_06161658.1| putative cylicin-2 [Actinomyces sp. oral taxon 848 str. F0332] gi|269212739|gb|EEZ79079.1| putative cylicin-2 [Actinomyces sp. oral taxon 848 str. F0332] Length = 232 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/156 (7%), Positives = 38/156 (24%), Gaps = 1/156 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + + ++A + + + E + ++ + + + + Sbjct: 27 ETAEGADVVSHAAEGGTDAAEADLAEVDDASAKRTEEDVKDVAAKGSGEDGEPEEAP-AK 85 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 G K+R ++ + D + + + S Sbjct: 86 GKRGKKRASKKDAAKGSSKKDGSSEEETTEKGSKARRKQKESSAESSKKGSKKSSGNPEK 145 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 T+ + + ++ +WW Sbjct: 146 GTKRSTEKKAAEKKASSKERKPARVKGLQSPKWWAP 181 >gi|226947747|ref|YP_002802838.1| NlpC/P60 family protein [Clostridium botulinum A2 str. Kyoto] gi|226841687|gb|ACO84353.1| NlpC/P60 family protein [Clostridium botulinum A2 str. Kyoto] Length = 774 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/172 (8%), Positives = 50/172 (29%), Gaps = 1/172 (0%) Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 I ++Y ++ + + V N+K+ ++ E + A Sbjct: 495 NQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKAT 554 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + +K + T +++ E ++ +E + + Sbjct: 555 EEAQ-KKAAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRKAAEEAQRKEAEES 613 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ++ +++ +R+ A + ++ S Q + ++ Sbjct: 614 QRKAAEETQRKEAEEAQRKEAEEAQRKAAEAEASKSQQKEQSNVSEKAPATN 665 >gi|328718428|ref|XP_001946747.2| PREDICTED: hypothetical protein LOC100169050 [Acyrthosiphon pisum] Length = 3414 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 39/158 (24%), Gaps = 14/158 (8%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + D + D E + +DE K E ++ + + E +R Sbjct: 1848 HKEDRRECHLDRKEERRDDRKEELRKDEPRREDRKDEPRKEDRKDEPRREDRKDEPRRED 1907 Query: 634 RRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME------------PSDITNHNLL 679 R+ RR D D + +D D E + Sbjct: 1908 RKDEPRREDRKDEPRREDRKDDRKEEQRREDRKDERKEDRKIEIKEERKEEIKNDKKEIK 1967 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 T + + + + + K+ + Sbjct: 1968 SERLVNITHEERKVPKDIKSDRLVNITHEERKVPKEVK 2005 >gi|301621897|ref|XP_002940281.1| PREDICTED: hypothetical protein LOC100127703, partial [Xenopus (Silurana) tropicalis] Length = 2395 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 9/165 (5%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC----VWQDEALLPIPKSESLEDIQDNI 619 +++ + D + V ++E + + K+E ++ Sbjct: 2015 KVDRLEKASKGDRPDKALKVDRCEKRAKADRTEKPTKVDKNEKTVRVEKTEKPTKMEKTE 2074 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDA--GVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + + + R R + + + + S + D +P Sbjct: 2075 KATRAERSSKMVRTERPSKMDKPERPEKMPRLEKIEKSPKLEKASKNDKIEKPERSPRAE 2134 Query: 678 LLENGAHGFTENYDVSIPPVS---TPEMESSNSSSDPIVKKTRWW 719 + H E + PP P+ + ++P KK + W Sbjct: 2135 KEKMERHVRIEKVEKVEPPPKAALKPKHKQVKVKAEPPPKKRKKW 2179 >gi|148699378|gb|EDL31325.1| zinc finger, imprinted 1, isoform CRA_a [Mus musculus] Length = 679 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 9/207 (4%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +Y ++ + + + + L +YI K + L ++ Sbjct: 154 DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 213 Query: 586 QAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 P + E V + + ++ + T + K++ + R + Sbjct: 214 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLR 273 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------GFTENYDVSIPP 696 + SD QN + E S + EN + P Sbjct: 274 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 333 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 P ++ + +RK Sbjct: 334 SEKPTSGKDVEGKPQTMRSSSTNPKRK 360 >gi|156094854|ref|XP_001613463.1| PST-A protein [Plasmodium vivax SaI-1] gi|148802337|gb|EDL43736.1| PST-A protein [Plasmodium vivax] Length = 754 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 33/154 (21%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 A + S + + + E +PI + + +S E Sbjct: 83 NNTANQAGNKTATEPERKASPEPEKKAPSEPEKKVPIEPDRKVSSEPERKISSEPERKAV 142 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 R+ P + + I + + Sbjct: 143 TEPERKISSEPERKASTEAERKASTEAERKISSEPERKASTEAEKRTSPEPEKKTSNEPE 202 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 VS P +E S KK RK Sbjct: 203 RKVSTEPEKKVSIEPEKKVSIEPDKKAPTEPERK 236 Score = 44.2 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 27/150 (18%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + S + + + E + + S E+ Sbjct: 111 SEPEKKVPIEPDRKVSSEPERKISSEPERKAVTEPERKISSEPERKASTEAERKASTEAE 170 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R+ P + + + + ++ + Sbjct: 171 RKISSEPERKASTEAEKRTSPEPEKKTSNEPERKVSTEPEKKVSIEPEKKVSIEPDKKAP 230 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P E KK RK Sbjct: 231 TEPERKAPTEPERKVPAEPEKKAPTDAERK 260 Score = 43.8 bits (101), Expect = 0.097, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 34/153 (22%), Gaps = 2/153 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 +A KV A K E + + E + E Sbjct: 54 ARATQGETTKVTQSDTAKVTAKESEKEAMNNTANQAGNKTATEPERKASPEPEKKAPSEP 113 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ +S + V + + EP + + Sbjct: 114 EKKVPIEPDRKVSSEPERKISSEPERKAVTEPERKISSEPERKASTEAERKASTEAERKI 173 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ E E S KKT RK Sbjct: 174 SSEPERKASTEAEKRTS--PEPEKKTSNEPERK 204 >gi|168177854|ref|ZP_02612518.1| putative peptidoglycan hydrolase [Clostridium botulinum NCTC 2916] gi|182670514|gb|EDT82488.1| putative peptidoglycan hydrolase [Clostridium botulinum NCTC 2916] Length = 774 Score = 50.4 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/172 (8%), Positives = 50/172 (29%), Gaps = 1/172 (0%) Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 I ++Y ++ + + V N+K+ ++ E + A Sbjct: 495 NQIATQDKKYGVKENNVIVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKAT 554 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + +K + T +++ E ++ +E + + Sbjct: 555 EEAQ-KKAAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRKAAEEAQRKEAEEA 613 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ++ +++ +R+ A + ++ S Q + ++ Sbjct: 614 QRKAAEETQRKEAEEAQRKEAEEAQRKAAEAEASKSQQKEQSNVSEKAPATN 665 >gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii RML369-C] gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU 85-389] gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii RML369-C] gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU 85-389] Length = 744 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 25/169 (14%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 I AS ++ +V + ++V+ + E E G ++ V ++ S AFV+Y GN+ Sbjct: 598 IYASDKDKLKVAL---DKVKAIAIEPE-----IGEVFNGTVMKILDS--GAFVNYLGNKD 647 Query: 67 GFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126 GF+ EI +E + D V + N + Sbjct: 648 GFVHISEIA---------------EERIESVGSVLKQGDIVKVKLIGFDNKGKAKLTIKN 692 Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIK 175 A + + ++ + + G + K Sbjct: 693 AEKDKSSANPKPKNSPKEHQEPEKRDNGKKRAWNEDNNAETTEVVTERK 741 >gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] Length = 572 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 38/159 (23%), Gaps = 6/159 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEESTGV 627 + N Q S V + + + ++ +EE G Sbjct: 409 KDKKQGGNRQRNRRPAVQNQSTADENSAVGLERKTNSRENAAPQKKQENRPAAAEEKGGN 468 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + R+ + R + D SD + + N Sbjct: 469 KKNNRQGKGRSQERQPKADNENRSDRKPASSKNAAGNSTSQQARKQNGKRKKRNNRQRVP 528 Query: 688 ENYDVSIP-----PVSTPEMESSNSSSDPIVKKTRWWKR 721 E V P + +S ++KK W R Sbjct: 529 EEKAVRRSTKYDIREDFPAISKGDSGLKSLIKKPLKWLR 567 Score = 39.6 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 64/246 (26%), Gaps = 29/246 (11%) Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 G +I + + + ++ + I V +D+V ++ I + Sbjct: 266 GRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGID-----IDDIAMVINY 320 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD------SQAPSYDKNIECVWQDEA 602 + + I + + V D DK +E + E Sbjct: 321 DVPHDAEDYVH----RIGRTARADRDGKAITFVNVDDIYYFKQIESFLDKEVEKIPLPEE 376 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRR---------RRRRRRPATDHH----DAGV 649 L P+ + + ++ R ++ R+R RRPA + + Sbjct: 377 LGEGPEYKGNGKPKRGGNAKTRRRKDRDQQSHKDKKQGGNRQRNRRPAVQNQSTADENSA 436 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 V + + + E N + S + E+ + Sbjct: 437 VGLERKTNSRENAAPQKKQENRPAAAEEKGGNKKNNRQGKG-RSQERQPKADNENRSDRK 495 Query: 710 DPIVKK 715 K Sbjct: 496 PASSKN 501 >gi|296133630|ref|YP_003640877.1| cell wall hydrolase SleB [Thermincola sp. JR] gi|296032208|gb|ADG82976.1| cell wall hydrolase SleB [Thermincola potens JR] Length = 497 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 20/168 (11%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 EK P + AP + + + L + + Sbjct: 67 ADEAKQAPD---EKAQPAPVVEAKPAPAEEVQPAPVVEAKPAPAEEVQPALVVEAKPAPA 123 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + E+ + +P +D +V +Q ++ EP Sbjct: 124 EEVQPVPVVEA------KPAPANDSKPVSDKPRQMPGDEVRPVQTQRNE-----HEPVGN 172 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 N +++ + + + +++ S KK WWKR Sbjct: 173 LNTAVVDMSERVQADKFKTASGDKPRVPAKNNQS------KKEPWWKR 214 >gi|297262165|ref|XP_001093788.2| PREDICTED: SFRS2-interacting protein isoform 5 [Macaca mulatta] Length = 1546 Score = 50.0 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 40/178 (22%), Gaps = 1/178 (0%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 822 ADLKQMNDNSVTHSSENNMPSSDLADEKVETVSQPSESPKDTIDKARKPRTRRSRFHSPS 881 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q E+ RK + + A + S I Sbjct: 882 TTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARE 941 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 S + E+ + T + P S S +++ Sbjct: 942 RRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRERES 999 Score = 44.6 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 41/187 (21%), Gaps = 8/187 (4%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + I + + F E+ + D ++ Sbjct: 782 KTHIEQIQKHFS-----EDNNEMIPMECD---SFCSDQNECEVEPSVNADLKQMNDNSVT 833 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 ++ E +E + S + T ++ R RR R + + Sbjct: 834 HSSENNMPSSDLADEKVETVSQPSESPKDTIDKARKPRTRRSRFHSPSTTWSPNKDTPQE 893 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + S + + S P E S S + Sbjct: 894 KKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRD 953 Query: 716 TRWWKRR 722 T RR Sbjct: 954 TTRESRR 960 >gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116] gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116] Length = 527 Score = 50.0 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 42/163 (25%), Gaps = 2/163 (1%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P E+ Q Sbjct: 352 ASELFAIERLIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTA 411 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +RR + ++ +G N + + + N+N Sbjct: 412 EKKNSDGNNKPRRRFNSDNKNDKGEN-KSGKAGAGKPKGNRDGQARSNGKQSGNKPNNNQ 470 Query: 679 LENGAHGFTENYDVSIPP-VSTPEMESSNSSSDPIVKKTRWWK 720 G ++N + P P + K + + Sbjct: 471 SGASKPGASKNGNGGKPSGNRKPNSGKPAGAKPSNGKPSGQRR 513 >gi|167462630|ref|ZP_02327719.1| hypothetical protein Plarl_08735 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382590|ref|ZP_08056468.1| hypothetical protein PL1_0859 [Paenibacillus larvae subsp. larvae B-3650] gi|321153445|gb|EFX45852.1| hypothetical protein PL1_0859 [Paenibacillus larvae subsp. larvae B-3650] Length = 109 Score = 50.0 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 16/24 (66%) Query: 54 LQAAFVDYGGNRHGFLPFLEIHPD 77 +QAAFVD G ++ FL ++ P+ Sbjct: 1 MQAAFVDIGLEKNAFLYIDDVLPE 24 >gi|1236239|gb|AAC42083.1| phosphoprotein [Mus musculus] gi|1589169|prf||2210338A nuclear phosphoprotein p150TSP Length = 1173 Score = 50.0 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 32/143 (22%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K SD + D+ S+E + Sbjct: 1024 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 1083 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R+RRR +D+ S +DS + Sbjct: 1084 DSDQPSRKRRRSGSEQSDNESVQSGRSPSGASENENDSRPASPSAESDHESEQGSDNEGS 1143 Query: 686 FTENYDVSIPPVSTPEMESSNSS 708 + + S P S E S Sbjct: 1144 GQGSGNESEPEGSNNEASDRGSE 1166 >gi|303235317|ref|ZP_07321935.1| putative phage tail component, N-terminal domain protein [Finegoldia magna BVS033A4] gi|302493631|gb|EFL53419.1| putative phage tail component, N-terminal domain protein [Finegoldia magna BVS033A4] Length = 334 Score = 50.0 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 116/340 (34%), Gaps = 32/340 (9%) Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++E +I A D + F + +K +LVQ+ KE Sbjct: 22 GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTPFTQDLKPSDEILVQMTKES 81 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 +K TT +++ + K + + I Sbjct: 82 IDDKYPKFTTKITIETENLKYT----------NSDKLTFEGKQKYKDIDDFKQKYTFTGI 131 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDIS 308 + + K + +++ +++ + P L+Y + + K + I+ Sbjct: 132 VGDNFFKQEKAQQEKEINFILNKLRYIETEKKFLPIPKLLYRKNPVDKIIQEEKVDYLIT 191 Query: 309 EIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSR 368 + + ++++ + + + I + + + L + Sbjct: 192 NDKIVYRQYKEIL--------------NVKFDENYNYNYDNLISRDIIDKNSEIIKLDNN 237 Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 ++I +TEA+ +DVNS + + N +A ++I + + L+ + G+++VD + Sbjct: 238 AEIVIQRTEAMWVVDVNSSQMIMSEDYF---HELNTKALKKIHQMIYLKKMVGMVIVDCV 294 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 + +N+ + +K+ + + SN LLE + Sbjct: 295 R---EGDNKKLSDFIKDEFCEPN--INFHGFSNLNLLEFT 329 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 85/265 (32%), Gaps = 12/265 (4%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL---PFL-EIHPDYYQIPFSDRQALLKESNI 95 GNIY+AK+T+ + L A F++Y + GFL PF ++ P + ++++ + Sbjct: 29 GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTPFTQDLKPSDEILVQMTKESIDDKYPK 88 Query: 96 AQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGG 155 T +++ + + ++ I +F Q+ I+ N + K Sbjct: 89 FTTKITIETENLKYTNSDKLTFEGKQKYKDIDDFKQKYTFTGIVGDNFFKQEKAQQEKEI 148 Query: 156 SPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLS--------LAGRYS 207 + ++ I + K + K + T + Sbjct: 149 NFILNKLRYIETEKKFLPIPKLLYRKNPVDKIIQEEKVDYLITNDKIVYRQYKEILNVKF 208 Query: 208 VLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEY 267 N + ISR I + + + + + + +S+ + E Sbjct: 209 DENYNYNYDNLISRDIIDKNSEIIKLDNNAEIVIQRTEAMWVVDVNSSQMIMSEDYFHEL 268 Query: 268 LMRLWDNVRELALNSVAPHLVYEEG 292 + + ++ +V + Sbjct: 269 NTKALKKIHQMIYLKKMVGMVIVDC 293 >gi|154090953|ref|NP_033457.2| RNA polymerase-associated protein CTR9 homolog [Mus musculus] gi|91208163|sp|Q62018|CTR9_MOUSE RecName: Full=RNA polymerase-associated protein CTR9 homolog; AltName: Full=SH2 domain-binding protein 1; AltName: Full=Tetratricopeptide repeat-containing, SH2-binding phosphoprotein of 150 kDa; Short=TPR-containing, SH2-binding phosphoprotein of 150 kDa; Short=p150TSP gi|148685056|gb|EDL17003.1| Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae), isoform CRA_c [Mus musculus] Length = 1173 Score = 50.0 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 32/143 (22%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K SD + D+ S+E + Sbjct: 1024 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 1083 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R+RRR +D+ S +DS + Sbjct: 1084 DSDQPSRKRRRSGSEQSDNESVQSGRSPSGASENENDSRPASPSAESDHESEQGSDNEGS 1143 Query: 686 FTENYDVSIPPVSTPEMESSNSS 708 + + S P S E S Sbjct: 1144 GQGSGNESEPEGSNNEASDRGSE 1166 >gi|42490816|gb|AAH66196.1| Zinc finger, imprinted 1 [Mus musculus] Length = 579 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 9/207 (4%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +Y ++ + + + + L +YI K + L ++ Sbjct: 54 DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 113 Query: 586 QAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 P + E V + + ++ + T + K++ + R + Sbjct: 114 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLR 173 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------GFTENYDVSIPP 696 + SD QN + E S + EN + P Sbjct: 174 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 233 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 P ++ + +RK Sbjct: 234 SEKPTSGKDVEGKPQTMRSSSTNPKRK 260 >gi|242332541|ref|NP_035899.4| zinc finger, imprinted 1 [Mus musculus] gi|26352123|dbj|BAC39698.1| unnamed protein product [Mus musculus] gi|148699379|gb|EDL31326.1| zinc finger, imprinted 1, isoform CRA_b [Mus musculus] Length = 579 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 9/207 (4%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +Y ++ + + + + L +YI K + L ++ Sbjct: 54 DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 113 Query: 586 QAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 P + E V + + ++ + T + K++ + R + Sbjct: 114 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKTTSLEKQKAADQGRGSQSLR 173 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------GFTENYDVSIPP 696 + SD QN + E S + EN + P Sbjct: 174 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 233 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 P ++ + +RK Sbjct: 234 SEKPTSGKDVEGKPQTMRSSSTNPKRK 260 >gi|291227621|ref|XP_002733781.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 1102 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 5/147 (3%) Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 D + + ++ + ++ + + + STG +++ R Sbjct: 834 SADTKVDGKQSTAERKTKSSIPEKKRKASTAERKRKASKAERKRKASTGERKRKASTAER 893 Query: 638 RRPAT--DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 +R A+ + VS+ + + + + E + Sbjct: 894 KRKASTAERKTKASVSERQMKASTAERKRKASTTKRERKANTSERKRKSSTAEKNKKAST 953 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRR 722 S + +S S P K KRR Sbjct: 954 AKSKRKASTSESKRKPSRAK---RKRR 977 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 10/125 (8%) Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRR----RRRRPATDHHDAG------VVSDVSSIQN 658 S + +E T ++R+ R+R A+ S+ + Sbjct: 834 SADTKVDGKQSTAERKTKSSIPEKKRKASTAERKRKASKAERKRKASTGERKRKASTAER 893 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 S + ++ + + A + + SS+ KK Sbjct: 894 KRKASTAERKTKASVSERQMKASTAERKRKASTTKRERKANTSERKRKSSTAEKNKKAST 953 Query: 719 WKRRK 723 K ++ Sbjct: 954 AKSKR 958 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 1/117 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE-ST 625 K + + S K E +E + + ST Sbjct: 903 KTKASVSERQMKASTAERKRKASTTKRERKANTSERKRKSSTAEKNKKASTAKSKRKAST 962 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 +++ R +R+R + S I DIT N N Sbjct: 963 SESKRKPSRAKRKRRVSTAERKRKASTAEEISTKRSRGNGAITSSKDITVTNERFND 1019 >gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter aphrophilus NJ8700] gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter aphrophilus NJ8700] Length = 709 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 17/129 (13%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDY 61 ID ++ + N V+++ E + G IY KVTR+ A AFV Sbjct: 586 IDIDDDGTVKIAAVDKNAVQDVMARIEDITAEVEAGAIYKGKVTRL-----ADFGAFVSI 640 Query: 62 GGNRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 GN+ G + +I DY Q+ +++ + V Sbjct: 641 VGNKEGLVHISQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKELAPKEEAVQQ 700 Query: 115 PNDHSLEEV 123 +D +E+ Sbjct: 701 SSDDVVEQE 709 >gi|171846923|gb|AAI61463.1| Unknown (protein for IMAGE:7534822) [Xenopus (Silurana) tropicalis] Length = 854 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 68/226 (30%), Gaps = 2/226 (0%) Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 I+S+ + + ++ + + + +++ Y ++ ++ EA + Sbjct: 631 CDIKSEPVECSEEAKLSGDCPMETKSESCEIDYDDNMMEYKNSEGFNEDIKTEALLNETA 690 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 N V +L + E S + N + + + + L KSE Sbjct: 691 NDVKSGDLQEDSKENENQSKSSKVDNKLEMRQKLNTPKQKQNDGQPETPRQKLEG--KSE 748 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 +++ + K R++ TD + + ++ + + Sbjct: 749 TVKQKVEVKSETSKQKAEGKSETIRQKSEGKTDTPKQKTEGHPETPKQKSENKPETPKQK 808 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ + S TP+ +S + P KK Sbjct: 809 NEGKPETPKQKSDSRPETPKQKSESRPDTPKQKSDSRPDTPKKKKK 854 >gi|116194582|ref|XP_001223103.1| predicted protein [Chaetomium globosum CBS 148.51] gi|88179802|gb|EAQ87270.1| predicted protein [Chaetomium globosum CBS 148.51] Length = 1284 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/152 (7%), Positives = 30/152 (19%), Gaps = 2/152 (1%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + P+ + ++ + Sbjct: 880 PSNTPTANDHTGPENPPLNHPSAEPTPANPVPRPAKRSYTRRKAANEDGEEGERAPKRSY 939 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + + G +R RR+ D + ++ + + + D EP Sbjct: 940 TRRKPANEDGAEGERAPKRSYTRRKPANEDGEEGEDAANKRAPRKKREPKLDENGEPIKR 999 Query: 674 TNHNLLENGAHGF--TENYDVSIPPVSTPEME 703 G + S E Sbjct: 1000 QKSRPRRGGPNFSCDGTKKMRSTEGEEMTRAE 1031 >gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis str. McKiel] gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis str. McKiel] Length = 747 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 17/141 (12%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTD 99 G I+ VT++ S AF++Y GN+ GF+ EI +E + Sbjct: 623 GEIFNGTVTKILDS--GAFINYLGNKDGFVHISEIS---------------EERIDTVSS 665 Query: 100 SEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPED 159 D V + N + A+ + ++ N+ N E V+ S + Sbjct: 666 VIKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSLNNPKPQNSINNAKENSEHVRCDSIKK 725 Query: 160 VPKKFKRQYCIQEVIKNRQIL 180 E I R+ Sbjct: 726 RAWNEDNNAETAEFITERKYF 746 >gi|148228559|ref|NP_001082528.1| otogelin [Xenopus laevis] gi|49903364|gb|AAH76719.1| LOC398539 protein [Xenopus laevis] Length = 2414 Score = 49.6 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 65/246 (26%), Gaps = 24/246 (9%) Query: 478 ESTTKVCTYCKGA-GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKR 536 ++ C C+ G I + A I + ++D ++Y + Sbjct: 36 DTIKYDCQICECTNGRITDCARDANCIFK-----------KVATPEQNTDAIVY-DDDDP 83 Query: 537 ATIVEYEARFGVSINVVIG--IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 I E++ V + + + + K+ Sbjct: 84 NIIESSESKGNVRAKRAASGGHKKNPSAY-----ETNNKFKPNQSNRNDNDDSSKEHKDS 138 Query: 595 ECVWQDEALLPIPKSESLEDIQDNI-VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + + K S E+ E++ + R+ + + + + Sbjct: 139 NKGKGQKINNVLSKDSSEENASKEKWSHEKNDKMKTNERKGKDHNDSSKESKEKNHEKRQ 198 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 ++ + DS + S + N T + S+ E + ++ Sbjct: 199 NNKNGWLKDSSEENDSASKEKKDHDKNN--KVRTNQNKGNDHDHSSKESKENSHEK-GEK 255 Query: 714 KKTRWW 719 K RW Sbjct: 256 SKKRWQ 261 >gi|289668276|ref|ZP_06489351.1| ribonuclease G [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 70 Score = 49.2 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + I R + + Q+ A ++V S VV + ++ A + E E G SI + Sbjct: 1 MTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKSIRFQSDDQY 60 Query: 559 ADKLFYI 565 + F + Sbjct: 61 LQEQFDV 67 >gi|115383860|ref|XP_001208477.1| ATP-dependent protease La [Aspergillus terreus NIH2624] gi|114196169|gb|EAU37869.1| ATP-dependent protease La [Aspergillus terreus NIH2624] Length = 1119 Score = 49.2 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 40/155 (25%), Gaps = 6/155 (3%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 LA + + V V ++ S + + + E P + E E Sbjct: 24 PSLAAPRYNV-----VARSVLVPSRLSRSLPPVSRPFSSSSIRRREKPPPGDEKEDPEQK 78 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 EE RR+ + + S + S + + + Sbjct: 79 DQKEEVEEKDAERPSEPRRK-PIEQSGKQGSPDSGTPTSGFARRKERSAGEKEQRALEED 137 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 N A G + IPP P + S Sbjct: 138 SKKENNAAEGKEGKANNDIPPSPIPVSGGGSDSKP 172 >gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] Length = 742 Score = 49.2 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 17/129 (13%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDY 61 ID ++ + N V+++ E + G IY KVTR+ A AFV Sbjct: 619 IDIDDDGTVKIAAVDKNAVQDVMARIEDITAEVEAGAIYKGKVTRL-----ADFGAFVSI 673 Query: 62 GGNRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 GN+ G + +I DY Q+ +++ + V Sbjct: 674 VGNKEGLVHISQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTMKELAPKQDTVQE 733 Query: 115 PNDHSLEEV 123 D +E+ Sbjct: 734 SFDDVIEQE 742 >gi|295665931|ref|XP_002793516.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01] gi|226277810|gb|EEH33376.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01] Length = 662 Score = 49.2 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 39/125 (31%) Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 ++ +P+ + + +N+ + R+RRR T V + Sbjct: 29 ADKESVPVPVAPLPASTPVPENVAPATAADEGPVRKRRRVDATTETKPPLPSSVKKETRS 88 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +N D E T H EN + VS PPVS PI ++ Sbjct: 89 ENTRDVVVRERQEDGKSTYHLYRENAQTLRSVTKAVSPPPVSRRSTSEVTQGKTPISSRS 148 Query: 717 RWWKR 721 K Sbjct: 149 ETVKP 153 >gi|194381954|dbj|BAG64346.1| unnamed protein product [Homo sapiens] Length = 660 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 19/190 (10%), Positives = 43/190 (22%), Gaps = 24/190 (12%) Query: 556 IELADKLFYIEK-----------------GSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 +L + I + + AP + Sbjct: 460 PQLHPQQMIISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTP 519 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVS 654 + P+P S + ++E+ ++ +R+R P G V Sbjct: 520 AERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSR 579 Query: 655 SIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + EP + + + S P + S P Sbjct: 580 KPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKP 639 Query: 712 IVKKTRWWKR 721 ++ + Sbjct: 640 KRRRAADVEP 649 Score = 45.7 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 514 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 573 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 574 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 633 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 634 EPSRKPKRRRAADVEPSLPEPKR 656 Score = 44.2 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 39/179 (21%), Gaps = 24/179 (13%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 489 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 545 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 546 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 599 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--PIVKKTR 717 +E + + P P+ + P K+ R Sbjct: 600 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKRRR 658 >gi|281604178|ref|NP_001094131.1| Ctr9, Paf1/RNA polymerase II complex component, homolog [Rattus norvegicus] gi|293344329|ref|XP_001077817.2| PREDICTED: Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Rattus norvegicus] gi|293356139|ref|XP_238127.5| PREDICTED: Ctr9, Paf1/RNA polymerase II complex component, homolog [Rattus norvegicus] gi|149068293|gb|EDM17845.1| SH2 domain binding protein 1 (tetratricopeptide repeat containing), isoform CRA_a [Rattus norvegicus] Length = 1173 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 34/143 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K SD + D+ S+E + Sbjct: 1024 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 1083 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R+RRR +D+ A S +DS + + Sbjct: 1084 DSDQPSRKRRRSGSEQSDNESAQSGRSPSGGSENENDSRPVSPSAESDHESEQGSDNEGS 1143 Query: 686 FTENYDVSIPPVSTPEMESSNSS 708 + + S P S E S Sbjct: 1144 GQGSGNESEPEGSNNEASDRGSE 1166 >gi|221485206|gb|EEE23496.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2209 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 43/169 (25%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 V L D I ++A + + D + P KS S Sbjct: 243 VAKSGLEDDAGRIPVVRSLEASPRQTKAKETSEIEKAPDDALGKAAGRAQAEPAEKSGSE 302 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 V E +R+R+R + G + S + D+ EP Sbjct: 303 TKENALTVQNEREFDEANGAKRKRKRTQEKEGASGGTRTAGESPRQGRAADGDVPEEPEQ 362 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + T + + E P +++ R Sbjct: 363 RRRQKRGKANSDKPTRLKKPQLQRSTEKERTHRRDQRRPALRERDDASR 411 >gi|5114120|gb|AAD40226.1|AF111101_1 zinc finger protein Zim1 [Mus musculus] Length = 579 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 54/207 (26%), Gaps = 9/207 (4%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +Y ++ + + + + L +YI K + L ++ Sbjct: 54 DVAVYFSQKEWQLLEPAQKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKEN 113 Query: 586 QAPSYDKNIECVWQDEALLPIP-------KSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 P + E K+E + I S E + R + R Sbjct: 114 DVPGDPQQGEAGVSRSDTSAGKKTGDNSTKAEIRKPDNSKITSLEKQKAADQGRGSQSLR 173 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS--IPP 696 T D + + P + N + + + G T + P Sbjct: 174 AEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKENESAIPGTSSGQTSAATTTPQSAP 233 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 P ++ + +RK Sbjct: 234 SEKPTSGKDVEGKPQTMRSSSTNPKRK 260 >gi|323452037|gb|EGB07912.1| hypothetical protein AURANDRAFT_71714 [Aureococcus anophagefferens] Length = 383 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 6/159 (3%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE---DIQDNIVS 621 +++ V + S + P++ + D +D + Sbjct: 139 VQREVQQLREVARNATSKALRAESSAKRATSRRPATRGAAMTPENPTAPGWLDAEDALSP 198 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LL 679 E +R+R+ R RPA G +S + + + S + Sbjct: 199 EARAARLRERKPREVAARPAA-TKPPGALSPEARAARLREQSLRTRDSQIRVYKSAAPRR 257 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 G + + + P + S ++ P KKTRW Sbjct: 258 PAAITGTFQRGMTAEEKRTPPPVLESRHAAPPAAKKTRW 296 >gi|254565591|ref|XP_002489906.1| Subunit of the THO complex [Pichia pastoris GS115] gi|238029702|emb|CAY67625.1| Subunit of the THO complex [Pichia pastoris GS115] gi|328350317|emb|CCA36717.1| Uncharacterized protein C1D4.14 [Pichia pastoris CBS 7435] Length = 1636 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 31/274 (11%), Positives = 75/274 (27%), Gaps = 40/274 (14%) Query: 451 RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEY 510 + + + + + ++ S + ++ E + +G + R+ EE Sbjct: 1287 KIKTTIESPTTLNSVDFSDNKKQA---EKQYENGKSKEGTKKAKLPEGPKKEHKRTKEEK 1343 Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + +R + + E + ++ Sbjct: 1344 RERQKEK-----------------ERVRMKDKEKQQEKEGDIEKD------------TDK 1374 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 V N + +K +E V + E + Q+ S E+ Sbjct: 1375 VTEKENKKESPKEKENEKAPEKRVEEVSSE-----GKGKEIKDREQERPRSSENDLKED- 1428 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 +RR + T H S+V + + + ++ + G + Sbjct: 1429 SSKRRVDTKSDTPPHSNQDNSEVKAPGKSTRELLEARLKQEKEFARQKNQTGGKNNSRPP 1488 Query: 691 DVSIPPVSTPEM--ESSNSSSDPIVKKTRWWKRR 722 S + ++ ES N + K+ + RR Sbjct: 1489 SRSEKEAESTDVRTESRNDFRGDVKKEIPRFPRR 1522 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 18/194 (9%), Positives = 49/194 (25%), Gaps = 3/194 (1%) Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 Y ++ K+ + + R I + + ++ IE + Sbjct: 1229 YAMDLKQKQFLLLKKRAINRIRIEKRRKAEEEARKIEMEKNKAPNAYGLASLPVRKVVKI 1288 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 + K ++ + ++ E + ++ +R + + Sbjct: 1289 KTTIESPTTLNSVDFSDNKKQAEKQYENGKSKEGTKKAKLPEGPKKEHKRTKEEKRERQK 1348 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + +++ D EN E + +E +S Sbjct: 1349 EKERVRMKDKEKQQEKEGDIEKDTDKVTEKENKKESPKEKEN---EKAPEKRVEEVSSEG 1405 Query: 710 DPIVKKTRWWKRRK 723 K R +R + Sbjct: 1406 KGKEIKDREQERPR 1419 >gi|311273590|ref|XP_003133939.1| PREDICTED: LOW QUALITY PROTEIN: nipped-B-like protein-like [Sus scrofa] Length = 2804 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/175 (7%), Positives = 47/175 (26%), Gaps = 3/175 (1%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E++ I + ++ IE ++ + + + N + + E Sbjct: 637 ESKLDTKIEIQTEEPKQNESRTIE-SKQNESTTAEPKQNENRLSDTKPNDNKQNNGRSET 695 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P++ + ++ + + +++ RP T + + + Sbjct: 696 AKSRPETPKQKGESRPETPKQKSEGRPETPKQKGDGRPETPKQKGE--GRPETPKQKNEG 753 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + + + +P ++S + + R Sbjct: 754 RPETPKHRHENRRDPGKPSTEKKPEMSKHKQDIKSDSPRLKSERAEALKQRPDGR 808 >gi|306480366|emb|CBV36587.1| CagX protein [Helicobacter pylori] Length = 521 Score = 48.8 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 55/212 (25%), Gaps = 2/212 (0%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE--LADKLFYIEKGSPV 571 I + T D V + +K TI F ++V Sbjct: 49 GDEKPITIWTSLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFE 108 Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + VN + K I + L K+ E + KR Sbjct: 109 KEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKR 168 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + R R R ++ + + + N +++ LE+ N Sbjct: 169 KEERARNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANAL 228 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 I ++ + E + + K +K Sbjct: 229 KQIEELNKKQAEETIKQRAKDKISIKTDKPQK 260 >gi|297587671|ref|ZP_06946315.1| ribonuclease G [Finegoldia magna ATCC 53516] gi|297574360|gb|EFH93080.1| ribonuclease G [Finegoldia magna ATCC 53516] Length = 334 Score = 48.8 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 52/341 (15%), Positives = 121/341 (35%), Gaps = 34/341 (9%) Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 ++E +I A D + F + +K +LVQ++KE Sbjct: 22 GDYDSELGNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTKFTKDLKPSDEILVQMIKES 81 Query: 189 RGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVI 248 G+K TT +++ + K + + I Sbjct: 82 IGDKYPKFTTKITIETENLKYT----------NSDKLTFEGKQKYKDIDDFKQKYTFTGI 131 Query: 249 LRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNL-IKRAIRDLYCKDI 307 + E + + +E +N + L Y E + LY K+ Sbjct: 132 V---------------GEDFFKQEKSQQEKEMNFIVNKLHYIETEKKFLPIPKLLYKKNP 176 Query: 308 SEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPS 367 + I+ E + + + ++++ + + + I + + + L + Sbjct: 177 VDKIIQEEDVDYLITNDRIVYRQYKGILNVKFDENYDYNYDNLISRDIIDKNSEIIKLDN 236 Query: 368 RGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDF 427 ++I +TEA+ +DVNS + + + N +A ++I + + L+ + G+++VD Sbjct: 237 NAEIVIQKTEAMWVVDVNSSKMILKEDYF---HELNTKALKKIHQMIYLKKMVGMVIVDC 293 Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMS 468 + +++N+ + +K+ + + SN LLE + Sbjct: 294 VR---ERDNKKLSDFIKDEFCEPN--INFHGFSNLNLLEFT 329 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 79/270 (29%), Gaps = 22/270 (8%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFL----------PFLEIHPDYYQIPFSD---- 85 GNIY+AK+T+ + L A F++Y + GFL P EI + D Sbjct: 29 GNIYVAKITKYDKKLDAFFIEYDKKKTGFLNNTKFTKDLKPSDEILVQMIKESIGDKYPK 88 Query: 86 ---RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 + + E+ + + + + E+ Sbjct: 89 FTTKITIETENLKYTNSDKLTFEGKQKYKDIDDFKQKYTFTGIVGEDFFKQEKSQQEKEM 148 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 N +V+ + ++ K + + I + + I + + + Sbjct: 149 NFIVNKLHYIETEKKFLPIPKLLYKKNPVDKIIQEEDVDYLITNDRIVYRQYKGILNVKF 208 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 Y + + ISR I + + + + + + +S+ ++ Sbjct: 209 DENY-----DYNYDNLISRDIIDKNSEIIKLDNNAEIVIQKTEAMWVVDVNSSKMILKED 263 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEG 292 E + + ++ +V + Sbjct: 264 YFHELNTKALKKIHQMIYLKKMVGMVIVDC 293 >gi|221488128|gb|EEE26342.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2869 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 34/137 (24%), Gaps = 9/137 (6%) Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEEST-GVIRKRRRRRRRRRPATDHHDAGVVSDV 653 E ++E + E +E G ++ R R P+ + + G Sbjct: 1550 EERDENEPQEERQDDRNPEKRTHRTSEDEEMLGTGKQVRPAENSRSPSVRYGETGATRKD 1609 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 ++ + + + + VS + + + Sbjct: 1610 GKVEEKKPRDEEKEERNERKDAKRRAPEASEPASISSSVSPEKEGDRKEAHAEGNKAKAP 1669 Query: 714 KKT--------RWWKRR 722 ++ WW R Sbjct: 1670 RRKAENLSVVESWWDER 1686 >gi|322796271|gb|EFZ18847.1| hypothetical protein SINV_80216 [Solenopsis invicta] Length = 1022 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 7/213 (3%) Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + + E + H L +++ + E + Sbjct: 784 HGDRMEQLAEGEARRCQDLLSQAQYHVARARRLDEEEKMLRRKQEEERQAFKMRQTEEQR 843 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + + L V A +D+ ++ ++ + + + D+ Sbjct: 844 KLEEMR--RQKEEEMLQKRQEYVEKTKNALVFDEMPS----EKPGKKGKRTRTDQYVSDS 897 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHN 677 S+ G + R+R+R+P+ + + ++ +S +P Sbjct: 898 GGSDRDEGREEVPKERKRKRKPSGETKEKRSKGKGRRRKDAGSGNSGSDSDQPKRKRVKK 957 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 V + + + S+S+ Sbjct: 958 NAGTKKEKSARKGAVETLKGKLVKSKETISTSE 990 >gi|261327419|emb|CBH10394.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei gambiense DAL972] Length = 766 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/167 (7%), Positives = 35/167 (20%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 E + + + + E Q + + Sbjct: 276 ESEPQQPDDNETEAQQPDDKETEAQQPDDNETEAQQPDDNESEPQQPDDKETKPQQLDDK 335 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + +++ ++ + D+ D + + D + + D Sbjct: 336 ETEAQQPDDNESEPQQPDDNETEAQQPDDNESEPQQPDDNESEPQQPDDNETEAQQPDDN 395 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + ++ + P K+T KR Sbjct: 396 ESEPQQPDDKETEAQQPDDNEAEPQQPDDNETEAQQPDDKETELQKR 442 >gi|195427177|ref|XP_002061655.1| GK17071 [Drosophila willistoni] gi|194157740|gb|EDW72641.1| GK17071 [Drosophila willistoni] Length = 1358 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 47/160 (29%), Gaps = 5/160 (3%) Query: 566 EKGSPVQALVNTGHKVGSD---SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 E+ + + + S ++ + ++ +S+ + ++ S+ Sbjct: 745 ERQRSKERQRSVEKSNVRSVNKEREKSKERQRSRDGKQRSVDRTARSKERQRSREKQRSK 804 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + G R+R + R+ + + Q D S D + +++ + Sbjct: 805 DRQGRQSVERQRSKDRQRSKQRQPSRSAGSKERNQQRRDRSKDRHRRDRRSNSNSRRQRS 864 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + + K KRR Sbjct: 865 PSNSSSRKRND--DRKSTRATTPSPTRSRKQKSRSPVKRR 902 Score = 45.3 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 36/144 (25%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + Q + + + + + P + S E Q + Sbjct: 790 RSKERQRSREKQRSKDRQGRQSVERQRSKDRQRSKQRQPSRSAGSKERNQQRRDRSKDRH 849 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R RR+ + + + +D S + + + Sbjct: 850 RRDRRSNSNSRRQRSPSNSSSRKRNDDRKSTRATTPSPTRSRKQKSRSPVKRRSHSPEEV 909 Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710 ++ P P + ++ +D Sbjct: 910 AAPKKTTVAPAFNPFKAAEDTVND 933 Score = 41.1 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 39/160 (24%), Gaps = 6/160 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 Q + + + + + + ++ S E Sbjct: 668 ESQRQGDKQQQPQRSRRDSRSRSRRPKSVARTPPRRESQKKDTQKSRERPRSSERQRSKD 727 Query: 630 KRRRRRR----RRRPATDHHDAGVVSDVSSIQNVI--DDSFDMYMEPSDITNHNLLENGA 683 ++R R R R + + + NV + + E + Sbjct: 728 RQRSRERHISKDRHRSKERQRSKERQRSVEKSNVRSVNKEREKSKERQRSRDGKQRSVDR 787 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ S + + + S K + K+R+ Sbjct: 788 TARSKERQRSREKQRSKDRQGRQSVERQRSKDRQRSKQRQ 827 >gi|309355528|emb|CAS00932.1| hypothetical protein CBG_26851 [Caenorhabditis briggsae AF16] Length = 1306 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 40/156 (25%), Gaps = 3/156 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G P V + + + S + + L + K+E+ E E Sbjct: 18 GRPRIRAVKDKAREVGATTSTSSTSTTKPSQKRR--LAMKKAETAEKKLQRKDEESEEIT 75 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++RR R+R A +S + Sbjct: 76 AKRRRLDAIRKRKARVEETEEEHKKRTSSNKERTSRARSEETEDQYRRRKSSNRVSTLRA 135 Query: 688 ENYDVSIPPVSTPEMESSNS-SSDPIVKKTRWWKRR 722 + + + ++ + + +T +RR Sbjct: 136 RSEETEGERIRRMLADAERTFKARSEETETDTLRRR 171 >gi|239947698|ref|ZP_04699451.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921974|gb|EER21998.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 748 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 31/175 (17%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ GF Sbjct: 600 ASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + EI ++ E V+ + GD+ + Sbjct: 650 VHISEI---------------------SEERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + T+++ + + + PE K++ ++ ++ + Sbjct: 689 TIKNTDKDKSSNNPKPKNNVNNAKENSEPEQRRDSSKKRAWNEDNNTETAEVITE 743 >gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 518 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +++A + + E G +I V+ + + AP ++N Sbjct: 352 EEKAYVKDIEKLTGKTIQVIGD---------------------HPYPMEVFEIAPKEERN 390 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 +++ D+ + +S RR RR D+ +D Sbjct: 391 SRQAKGAGKGAGSRRAKDSRRDTDSKRATDSRRAKDSRRATDSRRD-----TDSKRATDS 445 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + S + + A S P + P + + P+ Sbjct: 446 RWAADSRQATDSRTAADSRRATASRKQTSAGKPALTQSQSSPQKTRP-SGKRSHAPAPLP 504 Query: 714 KKT 716 +++ Sbjct: 505 RRS 507 >gi|325117073|emb|CBZ52625.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool] Length = 1056 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 39/166 (23%), Gaps = 8/166 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP-------KSESLEDIQDN 618 + G + A + + V + E K E + + Sbjct: 50 DSGKDRHRHERREKDRKASRDATAATNRGKDVDEAEKSEKKKKLKDEAHKREKRGPERPS 109 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + +R +R+ +R D V D + D + + + Sbjct: 110 ETQDTDGHEKDRRGKRKEAKREGQDASARPVTEDGEDVHMEEDKRKEKDDDQGRKAKKEI 169 Query: 679 LENGAHGFTENY-DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 G + D S + K + RR+ Sbjct: 170 RREGDRRRAKEKDDKHSSSRSEKRKRGRSPERSREKKSSGGGDRRR 215 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 1/148 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E V + + +K+ + + + + +D+ S + Sbjct: 131 EGQDASARPVTEDGEDVHMEEDKRKEKDDDQGRKAKKEIRREGDRRRAKEKDDKHSSSRS 190 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ R R R + + + + PS + G+ Sbjct: 191 EKRKRGRSPERSREKKSSGGGDRRRKEKDGR-KGSASASRPSLSPSLTRPSSAPSRGSSL 249 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIV 713 TE + + P P ++ + Sbjct: 250 ATEAPEAARPGARRPASQTGETPEKREK 277 >gi|302830023|ref|XP_002946578.1| heat shock protein Hsp70G [Volvox carteri f. nagariensis] gi|300268324|gb|EFJ52505.1| heat shock protein Hsp70G [Volvox carteri f. nagariensis] Length = 1103 Score = 48.4 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 36/152 (23%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 N G+ + + + S E E ++ Sbjct: 948 ASGSENADAAGGAGAGEGATGDAPGDAKAEPEQKRAGGQGSEEGTAGAAGGAEDQEATKR 1007 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + T +D + + D + + + + Sbjct: 1008 EAKKAGKAEGETKEAKKAGKADGDTKEAKKDGKTKKEQPKKNSKGKKEPKKDSKATEDTK 1067 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S T + S+ S KK+ W +R Sbjct: 1068 KESKAKPDTRKESSTKGSEKKDQKKSWSWNKR 1099 >gi|156093421|ref|XP_001612750.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148801624|gb|EDL43023.1| hypothetical protein, conserved [Plasmodium vivax] Length = 5892 Score = 48.4 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 3/100 (3%) Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 G R R +R + + S + D D + + + + Sbjct: 5184 DAGRRRGARASKRDSKRDSKGDSKRDSKRDSKRDSKRDSKRDSKRDSKRDSKRDSKRDSK 5243 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S + +S +D K KRR+ Sbjct: 5244 SRSANRSANRSANRSANRSTNRSSQNDT---KKGGRKRRR 5280 >gi|118103708|ref|XP_425012.2| PREDICTED: similar to delangin [Gallus gallus] Length = 2786 Score = 48.4 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 20/207 (9%), Positives = 49/207 (23%), Gaps = 1/207 (0%) Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 E + + + + ++ E+++ + V ++ +E Sbjct: 598 HPEIFRKKSDFEVQKTDIQQNENRQMEFQQNESRRLESKYNDNKQVEAKYDIKHDSRQME 657 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + Q+ P + E + + Sbjct: 658 MKQNENRQAESKQNESRQMEMKQNEGKQNNGKQEIRQRPETPKQKSEGRPETPKQKSEGR 717 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R RR + + + D S SD + + Sbjct: 718 PETPKHRHDNRRDSSKPLSEKKIELSRHKPDVKSDTSKVKSDSRSDPVKQRP-DGRSVSD 776 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713 T+ D + + ES DP Sbjct: 777 TQRRDHDSLKQRSEDRESERYKGDPSK 803 >gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] Length = 572 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 6/159 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEESTGV 627 + N Q S V + + + ++ +EE G Sbjct: 409 KDKKQGGNRQRNRRPAVQNQSTADENSAVGLERKTNSRENAAPQKKQENRPTAAEEKGGN 468 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + R+ + R + SD + + N Sbjct: 469 KKNNRQGKGRSQERQPKAANESRSDRKPASSKNAAGNSTSQQARKQNGKRKKRNNRQRVP 528 Query: 688 ENYDVSIP-----PVSTPEMESSNSSSDPIVKKTRWWKR 721 E V P + +S ++KK W R Sbjct: 529 EEKAVRRSTKYDIREDFPAISKGDSGLKSLIKKPLKWLR 567 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 29/246 (11%) Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 G +I + + + ++ + I V +D+V ++ I + Sbjct: 266 GRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGID-----IDDIAMVINY 320 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD------SQAPSYDKNIECVWQDEA 602 + + I + + V D DK +E + E Sbjct: 321 DVPHDAEDYVH----RIGRTARADRDGKAITFVNVDDIYYFKQIESFLDKEVEKIPLPEE 376 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRR---------RRRRRRPATDHH----DAGV 649 L P+ + + ++ R ++ R+R RRPA + + Sbjct: 377 LGEGPEYKGNGKPKRGGNAKTRRRKDRDQQSHKDKKQGGNRQRNRRPAVQNQSTADENSA 436 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 V + + + E N + S ES + Sbjct: 437 VGLERKTNSRENAAPQKKQENRPTAAEEKGGNKKNNRQGKG-RSQERQPKAANESRSDRK 495 Query: 710 DPIVKK 715 K Sbjct: 496 PASSKN 501 >gi|195380573|ref|XP_002049045.1| GJ21372 [Drosophila virilis] gi|194143842|gb|EDW60238.1| GJ21372 [Drosophila virilis] Length = 1254 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 38/353 (10%), Positives = 104/353 (29%), Gaps = 16/353 (4%) Query: 373 INQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEE 432 + ++ +N+ E A+ + +E ++++ L+ F + Sbjct: 659 VESSKRCTEAILNTAHIAMEQEHYTEAIDIYKQCLKEFLPTNSVKEMH-LLAKAFYQTGQ 717 Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 + + + +K + +D + + N G++ +Q IR + + T + Sbjct: 718 FEEAKKLLQKARHVAPQD-----LMILYNLGIV--IKQDIRQTYGKQRTDRTELQRAEQE 770 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++ S+ + E Y N ++V+ N + + E E + V Sbjct: 771 LKMAQSIFQYLGDKEESLQTAYKQANKCSKLLANVMEDFKNL--SELDEVEKKTEERQKV 828 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK---NIECVWQDEALLPIPKS 609 A + I + + Q ++ +D + K Sbjct: 829 KRDKAKAKE---ISRKKDYSKKRDQKETETEAPQKSEKEEPMCKDRYRKKDPSKKHQEKI 885 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 S ++ +++ ++R+ D + + S + S + + Sbjct: 886 SSADEQAKVEHENSICTEGPRKKEHLKKRQEMADEQEKSKNGEKSRKKEYPKQSQENPIY 945 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +++ L + + + + E I + K R Sbjct: 946 YTELETDELEKPLSDVLSTHSSKKEHSKKRKEKAYETGDRQKIERDESLSKER 998 >gi|302412737|ref|XP_003004201.1| predicted protein [Verticillium albo-atrum VaMs.102] gi|261356777|gb|EEY19205.1| predicted protein [Verticillium albo-atrum VaMs.102] Length = 534 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 41/162 (25%), Gaps = 12/162 (7%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE------SLEDIQDNIV 620 + +P ++ D + D + D + Sbjct: 68 QSAPAPESQPRRRGRPPGAKKQEPDTGTQPSQTDGPAAATVTASQVHVTAEPSDGPQETI 127 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 ++E+ R+ R+R+R R + P Sbjct: 128 NDETPKPGRQVRKRKRGRPSLAETAAETQPQQEEEPPEPQKTQKRKRGRPPAEEKEQAQG 187 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + T+ P + E+S +DP KK R RR Sbjct: 188 EPSEDRTQ------QPPPSTTAEASAIEADPPAKKPRGRPRR 223 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 10/167 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + ++ P + + I + ++ E Sbjct: 10 RKRAALVASDASQPEPPALPQDVNEELSFEGQVQSTPRPRGRPPKNKPIAQSGLTPEPQS 69 Query: 627 -----VIRKRRRRR---RRRRPATDHHDAGVVSDVSS--IQNVIDDSFDMYMEPSDITNH 676 +RR R +++ P T + ++ + + + + P + N Sbjct: 70 APAPESQPRRRGRPPGAKKQEPDTGTQPSQTDGPAAATVTASQVHVTAEPSDGPQETIND 129 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + G + E + P +KT+ KR + Sbjct: 130 ETPKPGRQVRKRKRGRPSLAETAAETQPQQEEEPPEPQKTQKRKRGR 176 >gi|307178712|gb|EFN67326.1| RNA polymerase-associated protein CTR9-like protein [Camponotus floridanus] Length = 1264 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 55/219 (25%), Gaps = 15/219 (6%) Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 + + + E + H L +++ + E + Sbjct: 797 THGDRMEQLAEGEARRCQDLLSQAQYHVARARRLDEEEKMLRRKQEEERQAFKMRQTEEQ 856 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 + +K + + ++ + + + + + I D Sbjct: 857 RKLEEMRRQKEEEMLQKRQEYVEKTKNALVFGEMPSEK------PGRKGRRVRTDQYISD 910 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID-DSFDMYMEPSDITNH 676 + S+ G + RRR+R+ +T+ + + +S +P Sbjct: 911 SGGSDREEGREEAPKERRRKRKASTEMKERKSRGKGKRRKEAESGNSGSESDQPKRKRGK 970 Query: 677 NLLENGAHGFTEN--------YDVSIPPVSTPEMESSNS 707 T S +ST E +S Sbjct: 971 KNTGTRKEKSTRRGAFENLKGKIKSKETISTSESDSDTG 1009 >gi|38603523|dbj|BAD02898.1| bacteriolytic enzyme [Bacillus clausii] Length = 1333 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 8/170 (4%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE--- 610 I V+ + + S+ + + E + SE Sbjct: 1064 IDENDTVPHSDEANDQTVEEDDHVADENEQASETTDTENDAENEESNLPASEEAPSEEND 1123 Query: 611 -----SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 SLE+ Q+ + + + P TD + + + + D Sbjct: 1124 STDESSLEEPQEPETDASADEQEPETDANTDEQEPETDASTDEQEPETDASADEQEPETD 1183 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + D+ E + D P T E ++ +S+P+ ++ Sbjct: 1184 ASADEQDLAEQVAEEEHGDADGTSEDQESPVSDTAENNEADENSEPVQEE 1233 >gi|240278603|gb|EER42109.1| conserved hypothetical protein [Ajellomyces capsulatus H143] Length = 1766 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 37/161 (22%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + IE + + + V D + Sbjct: 526 PDDVTPDASIEPQENARTQEPEAPTSEEATIPDGEPVTQQDVIPDSVEPESLVEAEEPVV 585 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 D+ ++ PAT S ++ +S + N Sbjct: 586 PDSSDEVVASKPEDDASLEPEPDTPATPEEPEAPESAADTVPETNGNSGEDPEASEPAAN 645 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 L+++ + + V PE S +DP T Sbjct: 646 LELVQSSTPETEVADEQTTEKVVEPETSKSVDIADPAPDST 686 >gi|226322821|ref|ZP_03798339.1| hypothetical protein COPCOM_00593 [Coprococcus comes ATCC 27758] gi|225208802|gb|EEG91156.1| hypothetical protein COPCOM_00593 [Coprococcus comes ATCC 27758] Length = 933 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 27/279 (9%), Positives = 72/279 (25%), Gaps = 27/279 (9%) Query: 426 DFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCT 485 DF +++N + + ++ + + + S G ++ R + + + L Sbjct: 86 DFGQSSKQQNRKRIRAEVGKESR-------LAEKSEAG--QLGRLKDKRADLSENRGDSR 136 Query: 486 YCKGAGYIRSQSSVALSILRSVEEYLLQYTAH------------NIIVHTHSDVVLYLLN 533 + G + + L ++ N + Sbjct: 137 RNQTGGSKKPKQKQRLKFAYEETGASVKNDKDMEKLNQMDTDGVNFRHQKQKEKAKKFSY 196 Query: 534 QKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 ++ E + + K F ++ G V A S Sbjct: 197 EEARKKKEAKQHSKKAQVYQANEGESPGKKKFRLKFGEGESVKTEKASVVKKAGSATSVA 256 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--- 648 + E ++ + + LE+ + + E R+++R R+R + Sbjct: 257 LHREISKNEDDNAAVEGAHKLEESGEGVYRLEQRSARRRKQRASRKRSRLERQEEKQTQA 316 Query: 649 -VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + ++ I + + G Sbjct: 317 ATRQEQKKLKKRIQKQQIKRDYAKAKRSEQTVGTATKGT 355 >gi|62088844|dbj|BAD92869.1| PI-3-kinase-related kinase SMG-1 isoform 1homolog [Homo sapiens] Length = 854 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 54/258 (20%), Gaps = 21/258 (8%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R SV + + R SV LR + + Sbjct: 600 RHLPSVSSLPFHPQLHPQQMIISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPS 659 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 I R + L + AP Sbjct: 660 APPSADDNIKTPAERLRGPLPPSADDNLKTP--------------SERQLTPLPPSAPPS 705 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHD 646 + + P+P S + ++E+ ++ +R+R P Sbjct: 706 ADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRR 765 Query: 647 AGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEME 703 G V + + EP + + + S P + Sbjct: 766 VGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVG 825 Query: 704 SSNSSSDPIVKKTRWWKR 721 S P ++ + Sbjct: 826 DVEPSRKPKRRRAADVEP 843 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 708 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 767 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 768 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 827 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 828 EPSRKPKRRRAADVEPSLPEPKR 850 >gi|307168125|gb|EFN61404.1| Muscle M-line assembly protein unc-89 [Camponotus floridanus] Length = 5829 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 52/176 (29%), Gaps = 2/176 (1%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + +I E R +I++ + + I++ + V ++ + + Sbjct: 2043 KDSIKVVEKRKDSAIDISEAKKTKVEEIQIKEEAKVNPTLSKVDSIKDSKVVEKRKDSAT 2102 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--VVSDV 653 + + + E + E T +++RR + R +++V Sbjct: 2103 NISEAKKSKVEEIRAKEEAKANPNHRRERTLRPTYQKKRRPKSRKLKQRKKPRQIRITEV 2162 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 IQ +D + +D + T E +++ S Sbjct: 2163 EEIQTKEEDKENPNPPKADSIKDSTKNVEKRKDTATNISEANKTKVEEAQANMSRR 2218 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 49/169 (28%), Gaps = 11/169 (6%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + V+ + + + E + + A + E ++ E + Sbjct: 1984 EELKSDEKPVSVKVESQQANLVSPKVQVKEEIQANLASPKVQAKEEVKVNPSAPKVESTK 2043 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 I+ +R+ ++ V + ++ + D ++ A Sbjct: 2044 DSIKVVEKRKDSAIDISEAKKTKVEEIQIKEEAKVNPTLSKVDSIKDSKVVEKRKDSATN 2103 Query: 686 FTENYDVSIPPVSTPEMESSNSS-----------SDPIVKKTRWWKRRK 723 +E + + E +N + K+R K+RK Sbjct: 2104 ISEAKKSKVEEIRAKEEAKANPNHRRERTLRPTYQKKRRPKSRKLKQRK 2152 >gi|326668838|ref|XP_692662.4| PREDICTED: LOW QUALITY PROTEIN: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 [Danio rerio] Length = 1439 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 6/151 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + S ++ V ++ + E E + ++ +S Sbjct: 1224 KDKAHSHKEKLQQSTRDSQKNRSSRQHSRSVSPQKSRRERQEVEIGETEESHLDQRKSGT 1283 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RK+R R+R T ++ + V + + + Sbjct: 1284 DRRKKRESAVRKRNETQERESERKVKSKEDEEVQRKGQAE------LEGTQKKKKQRNIE 1337 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +N D I P + S K+ + Sbjct: 1338 MQNGDTLISPDRKSKQTKDKGSLRDQRKENK 1368 Score = 40.7 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 2/160 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E S ++ + + S V + L + S + ++ +T Sbjct: 1129 ENSSAGDVILPDPPGSHTSNIPLSSHPTSTSVKKRTGLTDGSLNPSKDSKREKHTKTPNT 1188 Query: 626 GVIR-KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 R ++ RR + R A + D G S D + + T + + Sbjct: 1189 SSSRVSQQPRRIKSRSAENLLDLGDTEKSKSPSKAKDKAHSHKEKLQQSTRDSQKNRSSR 1248 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPI-VKKTRWWKRRK 723 + + E+E + + +K+ +R+K Sbjct: 1249 QHSRSVSPQKSRRERQEVEIGETEESHLDQRKSGTDRRKK 1288 >gi|237837447|ref|XP_002368021.1| hypothetical protein TGME49_031200 [Toxoplasma gondii ME49] gi|211965685|gb|EEB00881.1| hypothetical protein TGME49_031200 [Toxoplasma gondii ME49] Length = 2710 Score = 47.7 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 29/275 (10%), Positives = 74/275 (26%), Gaps = 24/275 (8%) Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQ--RIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 E+ ++ R +V + L+ +R+ R + E + + G+ R ++ Sbjct: 2274 EARTREGHRQRVESERPSDRLQGAREETRQGEAREERSDREQIEAVRRGWRREEAVKPRE 2333 Query: 503 ILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 R E + + + + + E R + + Sbjct: 2334 DTRGDREAAKDSCRSRKVQKTCEEE------DSEDELCARLERRQRTTDSSKSDEMATHG 2387 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 E P + + I ++E PK+ + ++ D + Sbjct: 2388 ----ETRRPGTRREGREKAAFTVQNNAYPEAKIFSSDEEEHWTKAPKARAAREVTDLGET 2443 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 RRR+P + +D + + ++ Sbjct: 2444 NL-----------PRRRKPEARKEKTTRSKKTRKTRKNQEDETTETDNKDEDSKDEHSKD 2492 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +N D + + +S + S+ ++ Sbjct: 2493 ENSKDEDNKDEDNKDEDSKDEDSKDEDSEDEKPRS 2527 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 6/151 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + ++ + ++ ++E + + S+ Sbjct: 2324 RREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTDSSKSDEM 2383 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR RR + A V + + + I S + A Sbjct: 2384 ATHGETRRPGTRREGREKA-AFTVQNNAYPEAKIFSSDEEEHWTKA-----PKARAAREV 2437 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 T+ + ++P PE ++ +KTR Sbjct: 2438 TDLGETNLPRRRKPEARKEKTTRSKKTRKTR 2468 >gi|332206454|ref|XP_003252308.1| PREDICTED: protein SCAF11 [Nomascus leucogenys] Length = 1463 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 17/178 (9%), Positives = 40/178 (22%), Gaps = 1/178 (0%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK + + ++ P ++ Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETLSQPSESPKDTIDKAKKPRTRRSRFHSPS 798 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q E+ RK + + A + S I Sbjct: 799 TTWSPNKDAPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARE 858 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 S + E+ + T + P S S +++ Sbjct: 859 RRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRERES 916 >gi|84387285|ref|ZP_00990306.1| translation initiation factor IF-2 [Vibrio splendidus 12B01] gi|84377932|gb|EAP94794.1| translation initiation factor IF-2 [Vibrio splendidus 12B01] Length = 896 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 13/158 (8%), Positives = 37/158 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E V + ++ QA +E + ++ + + E Sbjct: 110 EAEEVANREVEEKAQRDAEEQAKRDAAEKAQREAEEKVTREADAKRDSEEKAQRAQAEKA 169 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + + + + + + ++ + E + N Sbjct: 170 KKDMNSKNADANAQAKKEADELKTRQEQEATRKAEAEAAKLVEEARKLAEENQERWSEEE 229 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + D KK RR+ Sbjct: 230 KKKKEQEKSADYHVTTSTYAREAEDAADKKDEKAPRRR 267 >gi|221509216|gb|EEE34785.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 2714 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 29/275 (10%), Positives = 74/275 (26%), Gaps = 24/275 (8%) Query: 445 ESLKKDRARVQVGAISNFGLLEMSRQ--RIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 E+ ++ R +V + L+ +R+ R + E + + G+ R ++ Sbjct: 2278 EARTREGHRQRVESERPSDRLQGAREETRQGEAREERSDREQIEAVRRGWRREEAVKPRE 2337 Query: 503 ILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 R E + + + + + E R + + Sbjct: 2338 DTRGDREAAKDSCRSRKVQKTCEEE------DSEDELCARLERRQRTTDSSKSDEMATHG 2391 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 E P + + I ++E PK+ + ++ D + Sbjct: 2392 ----ETRRPGTRREGREKAAFTVQNNAYPEAKIFSSDEEEHWTKAPKARAAREVTDLGET 2447 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 RRR+P + +D + + ++ Sbjct: 2448 NL-----------PRRRKPEARKEKTTRSKKTRKTRKNQEDETTETDNKDEDSKDEHSKD 2496 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +N D + + +S + S+ ++ Sbjct: 2497 ENSKDEDNKDEDNKDEDSKDEDSKDEDSEDEKPRS 2531 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 6/151 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + ++ + ++ ++E + + S+ Sbjct: 2328 RREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTDSSKSDEM 2387 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR RR + A V + + + I S + A Sbjct: 2388 ATHGETRRPGTRREGREKA-AFTVQNNAYPEAKIFSSDEEEHWTKA-----PKARAAREV 2441 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 T+ + ++P PE ++ +KTR Sbjct: 2442 TDLGETNLPRRRKPEARKEKTTRSKKTRKTR 2472 >gi|260795120|ref|XP_002592554.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae] gi|229277775|gb|EEN48565.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae] Length = 3563 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 62/576 (10%), Positives = 170/576 (29%), Gaps = 42/576 (7%) Query: 85 DRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 DR++ ++E + EA + + D E AN + E ++ + Sbjct: 1932 DRESEIEELRRRIRELEAENEALRKK----IADLRRELDDQTANMERYQREARDANSEVE 1987 Query: 145 VVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAG 204 + + + + + K + + + E+ ++ ++ L +A Sbjct: 1988 RLEQLLAQRESDIRGLQSDLLSARDEVNITKMKTTEITRAESEQLSSQM-KLSNDLQMA- 2045 Query: 205 RYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRD 264 L + + + + L+ ++T+ Sbjct: 2046 ----LNEKQGRLGAM------EAEARKLRSDLEISRRDNEEKFAEINGLKNKTRDMESEL 2095 Query: 265 FEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCK----DISEIIVSGEKGYRE 320 +L+ + + + E N ++R +++ + + + Sbjct: 2096 SGLNQKLYQDKQANRSLQEKLDDLQFEMNRLRRELQEKEGYITSMETKMSNLESSVVGQS 2155 Query: 321 AKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALV 380 ++ K+ + + + E ++ L + + L + ++T L Sbjct: 2156 SEKDGKIQEQMEEIRRLRMKIESLNDDMTERERKMLDLAREKEELQGQYEFYFSETSKLQ 2215 Query: 381 SIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK-NNRSV 439 + E T + + EA E+ LR R + + + E + + R Sbjct: 2216 T-------QVTEIQTVQTQMGGSTEALEDELESLRRRLKSD---NEHANQEAFELHRRIT 2265 Query: 440 EKKLKESLKKDRARVQVGAISN-FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 E +L+ + ++ + +S G +E RQ++R + +S+ Y + S Sbjct: 2266 ELELERNTATEKLKHMEVNMSQGSGEVEKLRQQLRRAEQDSSNTELRYNEMHKVNERLRS 2325 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 IL + + + S + +L Q R I++ +++ L Sbjct: 2326 DMDDILHQRDIAQRLSKEQEAKLLSLSQRLRHLEEQTRTEILDLQSKLR---------NL 2376 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 ++ +++ L + ++ E + + K+ + E++ Sbjct: 2377 QNEYQLLDR-KQQDTLDKLRVAESELQTERTARQSGEFSQTTVSKTTVTKTSAAEEMDSK 2435 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + + R G Sbjct: 2436 LRGGQPDDDHDGPDGMERVGEEKLGRKPKGHGKPRR 2471 >gi|255554000|ref|XP_002518040.1| conserved hypothetical protein [Ricinus communis] gi|223542636|gb|EEF44173.1| conserved hypothetical protein [Ricinus communis] Length = 946 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 40/161 (24%), Gaps = 4/161 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + GS S + L K + ++D+ + Sbjct: 617 RRESSPRRARKSSHGGSRSPRHHRGSRSSPRNDSDNKLKYRKRSRSKSVEDSKEKAKEAQ 676 Query: 627 VIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + +++ RR R + + S + S +E T Sbjct: 677 DEKFKKQERRSRSLSVEEKNNVSKSSSRSIDENEPKHRGRSRSKSVEARRSTEKVNETRD 736 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + S S ++ KK++ R++ Sbjct: 737 GRLKNRDRKRSRSKSVEVRRHSREKGNESRDKKSKHRDRKR 777 >gi|313245893|emb|CBY34876.1| unnamed protein product [Oikopleura dioica] Length = 500 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 34/154 (22%), Gaps = 3/154 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + T S + E + K + ++ ++ Sbjct: 124 AVAQIKSGGKAEKTEKSSSKSSNKTKEAEKSERRGSRDESKQREKKS--DKRAESKPRDD 181 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE-NG 682 G +R + RR R + + + + D E D + Sbjct: 182 KKGSKERRDKSERRDRDKSKKRETSEERRIRKEKERADRKEKERAERKDRKKGGEEKAER 241 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + +D KK Sbjct: 242 SERRSSRPVRPTSAKGERRRPPPVPENDKEEKKK 275 >gi|291276334|ref|YP_003516106.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198] gi|290963528|emb|CBG39359.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198] Length = 529 Score = 47.7 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 69/255 (27%), Gaps = 14/255 (5%) Query: 44 LAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI-------HPDY-YQIPFSDRQALLK---E 92 A V+ +EP AFVD G + GFL EI HP I +++ E Sbjct: 267 KANVSNIEPY--GAFVDIGNDLEGFLHISEISWSKDIKHPQECLNIGQELDVEIIEINLE 324 Query: 93 SNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET-EEESIISANNDVVSNVED 151 + + + + + + E I D Sbjct: 325 ERRLRVSLKKLTERPFAEFAKKYKEGDVVEGRVETLTDFGAFINLGAIDGLLHNEDAFWD 384 Query: 152 VKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP 211 + + + I ++ + + + + E Y ++ Sbjct: 385 KDKKCKDHFKQGDILKVKIIKIDTKNERISLSMRVLEESPADRFAKKYKVDDAIEGTVVD 444 Query: 212 NTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRL 271 G I + + + R ++ GM + A + +++ L R Sbjct: 445 VKDFGVFIEVEGIDALIRNEDLSGIAKQDITKGMKLRGAIAYIDPSSNKVRVSMRRLERQ 504 Query: 272 WDNVRELALNSVAPH 286 + + NS Sbjct: 505 QEREDIKSFNSNKKM 519 >gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae ESF-5] gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae ESF-5] Length = 748 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ GF Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + E+ + E V+ + GD+ + Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + +++ + + PE K++ ++ ++ + Sbjct: 689 TIKNADKDKSSNNTKPKTNVNNTKDNSEPEQRRDSSKKRAWNEDNNAETAEVITE 743 >gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] Length = 508 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 17/167 (10%), Positives = 40/167 (23%), Gaps = 8/167 (4%) Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 V ++ +++R + E +I+ F I +PV + Q Sbjct: 350 VSFVDSEERQHLTAIERLIKRTIDREA-----LPAFAI---APVDPNESDARPPRQPRQP 401 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 ++ ++ + + S ++ + R + D Sbjct: 402 SRHNNANAPRQARTDRPAGRQATPPSPSRAPVRSRDADNFGNRAPRSEVEAKRGHPDADG 461 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 + S P N A + D + Sbjct: 462 NRALRNAGPNGAPRSSDSARAAPRPDGNRRPQSRPALFNAKTDDRNR 508 >gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii Ech703] gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703] Length = 722 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 20/106 (18%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 627 RIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRIE 676 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 DY Q+ +L+ + V ++T ++ Sbjct: 677 KVADYLQLGQEVPVKVLEVDRQGRVRLSIKEATVQSQEITPVSEAE 722 >gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica str. Tucson] gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica str. Tucson] Length = 716 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 23/123 (18%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 607 IAATGGEKAKFAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 653 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + + + Sbjct: 654 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATMPEAESPPAV 713 Query: 117 DHS 119 + Sbjct: 714 EAE 716 >gi|327289343|ref|XP_003229384.1| PREDICTED: e3 ubiquitin-protein ligase RBBP6-like, partial [Anolis carolinensis] Length = 1223 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 41/163 (25%), Gaps = 7/163 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E K S + + L E + + E+ Sbjct: 1037 EHPDSRSGKEEKSKKEHSSKDVKPEKLASKEEKAKKPLDKGKPVEVKPEKRKRKTEEKGD 1096 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-----PSDITNHNLLE 680 ++ + + + + A + + + P+ N Sbjct: 1097 SKEQEAASSKTPKPESAESKPAPKGVKAEPEDEKSEKTPEKDKTVLPAVPAKKIKLNRET 1156 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 TEN + ++ +++S P KT+ RRK Sbjct: 1157 GKKIASTENAPPAKEALAEKPEPTTSSKVKPE--KTKGKMRRK 1197 >gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium atrosepticum SCRI1043] gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 706 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 27/122 (22%) Query: 15 TRVVVLRDNR-------VEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGN 64 R+ + +EE+ + E G +Y KVTR+ AFV GG Sbjct: 595 VRIASTDGEKAKHAIRRIEEITAEIE-------VGRVYQGKVTRIVDFG---AFVAIGGG 644 Query: 65 RHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPND 117 + G + +I DY Q+ +L+ + + + P+ Sbjct: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANPQTQEAAAPSS 704 Query: 118 HS 119 Sbjct: 705 EE 706 >gi|258577965|ref|XP_002543164.1| predicted protein [Uncinocarpus reesii 1704] gi|237903430|gb|EEP77831.1| predicted protein [Uncinocarpus reesii 1704] Length = 522 Score = 47.7 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + +Q P+ N E E ED D ++ R++R Sbjct: 59 RQPSPEDKSPPAQEPASADNEERGRVRRKRSFDESKE--EDNADAETEKKDENSQRRKRS 116 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY--D 691 R + + + + V D + P + + L+ TE Sbjct: 117 RDSKVEEKQSLPEPKENRARTPSREVPRDETGQVLSPKKKRSRDQLDKDTQTHTETRGQP 176 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 P + ++N + + +K R Sbjct: 177 SDKADAEKPTLSTNNRTEEGEPEKKRHRD 205 >gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera 4Rx13] gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera 4Rx13] Length = 686 Score = 47.3 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 23/124 (18%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 576 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 622 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + + P Sbjct: 623 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSSAPA 682 Query: 117 DHSL 120 + Sbjct: 683 PEAE 686 >gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246] gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246] Length = 748 Score = 47.3 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ GF Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + E+ + E V+ + GD+ + Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + +++ + + PE K++ ++ ++ + Sbjct: 689 TIKNADKDKSSNNTKPKTNVNNTKDNSEPEQRRDSSKKRAWNEDNNAETAGVITE 743 >gi|296534828|ref|ZP_06897171.1| ribonuclease G and E family protein [Roseomonas cervicalis ATCC 49957] gi|296264845|gb|EFH11127.1| ribonuclease G and E family protein [Roseomonas cervicalis ATCC 49957] Length = 202 Score = 47.3 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 350 GIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEE 409 +E + + L V LP G + ++ T AL++ID+++G AE Sbjct: 55 DLEEEFERLAGMAVPLPGGGRLTLHPTPALLAIDIDAGPQAGSRDAAAHRALNAAALAE- 113 Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 RQ+RLR LAG I+VD M+ +++ LK L D +G LLE+ R Sbjct: 114 ALRQIRLRHLAGAILVDMAGMKVAA-RQALLPGLKPLLAADPHLRLLGLTGLG-LLELQR 171 Query: 470 QRIRSSVLESTTKV 483 +R+ + + E Sbjct: 172 RRVHTPLHEVLGHP 185 >gi|312378982|gb|EFR25402.1| hypothetical protein AND_09293 [Anopheles darlingi] Length = 3431 Score = 47.3 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 15/200 (7%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIE---------LADKLFYIEKGSPVQALVNTGHKV 581 + N E+ + +V + I++ +P + V+ + Sbjct: 2358 IENNTAKQESNIESSSKTAPDVKSEPHTPPAISDKDASRPQSAIDEKAPSEKSVDLKAES 2417 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSE-----SLEDIQDNIVSEESTGVIRKRRRRRR 636 S+ S E A+ SE E + + ++ R + Sbjct: 2418 KDASRPASAASEKEASRPQSAIDEKAPSEKSVDLKAESKDASRPASAASEKEASRPQSAI 2477 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP-SDITNHNLLENGAHGFTENYDVSIP 695 + ++ + + S P S I E E+ D S P Sbjct: 2478 DEKAPSEKSVDLKAESKDASRPASAASEKEASRPQSAIDEKAPSEKSVDLKAESKDASRP 2537 Query: 696 PVSTPEMESSNSSSDPIVKK 715 + E ESS S K+ Sbjct: 2538 ASAASEKESSRPQSTVDGKE 2557 >gi|237831745|ref|XP_002365170.1| hypothetical protein TGME49_059860 [Toxoplasma gondii ME49] gi|211962834|gb|EEA98029.1| hypothetical protein TGME49_059860 [Toxoplasma gondii ME49] gi|221506664|gb|EEE32281.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 2085 Score = 47.3 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 4/185 (2%) Query: 534 QKRATIVEYEARFGVSINVVI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 KR + EA G E + + G + G+ D Sbjct: 1614 HKRGEVTREEADTGKEAQGRGSEDEARASEAETNRAIAAGEEMERGKEQGTSKGDEDPDM 1673 Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 ++ + + + E+ K RR+R+R + D + Sbjct: 1674 EERRAGEETRQSQDDEGRRPDGHRGGDEEEQKREKPAKERRKRQRPENSEGEKD---MQR 1730 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + S +P E+ E+ + +P ++E S + Sbjct: 1731 EQTSERTDAPSQAATKKPRGCRPEVRTEDEKRREGESDEDEVPAHDGDDLEESRRPEEDG 1790 Query: 713 VKKTR 717 + TR Sbjct: 1791 EEATR 1795 >gi|296211398|ref|XP_002752394.1| PREDICTED: SFRS2-interacting protein [Callithrix jacchus] Length = 1463 Score = 47.3 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 43/177 (24%), Gaps = 1/177 (0%) Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + + S+ ++ EK + + ++ P ++ Sbjct: 740 DLKQINENSVIDSSENNMSSSDLADEKVETISQPSESPIDTIDKAKKPRTRRSRFHSPST 799 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + + Q E+ +K + + A + S I Sbjct: 800 TWSPNKDTPQEKKRPQSPSPRRETRKESKKSQSPSPKNESARGRKKSRSQSPNKDIARER 859 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 S + +I E+ + T + P S S +++ Sbjct: 860 RQSQSQSPKRDNIKESRRSESLSPRRDTLRENKRSQPREKDSSPGEKSRSQSRERES 916 >gi|194382938|dbj|BAG59025.1| unnamed protein product [Homo sapiens] Length = 1133 Score = 47.3 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP + + P+P S Sbjct: 962 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 1007 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668 + ++E+ ++ +R+R P G V + + Sbjct: 1008 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1067 Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 EP + + + S P + S P ++ + Sbjct: 1068 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1122 Score = 45.0 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 987 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 1046 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 1047 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1106 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 1107 EPSRKPKRRRAADVEPSLPEPKR 1129 >gi|209529739|ref|NP_001129337.1| nuclear pore complex interacting protein family member [Homo sapiens] gi|325511394|sp|A8MRT5|K220L_HUMAN RecName: Full=Putative NPIP-like protein LOC100132247 Length = 1133 Score = 47.3 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP + + P+P S Sbjct: 962 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 1007 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668 + ++E+ ++ +R+R P G V + + Sbjct: 1008 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1067 Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 EP + + + S P + S P ++ + Sbjct: 1068 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1122 Score = 45.0 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 987 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 1046 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 1047 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1106 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 1107 EPSRKPKRRRAADVEPSLPEPKR 1129 >gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans 568] gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans 568] Length = 705 Score = 47.3 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 23/122 (18%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + P Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSPAPE 703 Query: 117 DH 118 Sbjct: 704 AE 705 >gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937] gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937] Length = 706 Score = 47.3 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 20/106 (18%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 611 RIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHS 119 DY Q+ +L+ + + ++ Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATSQSQETVQVSEEE 706 >gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602] gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602] Length = 707 Score = 47.3 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 23/120 (19%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYQGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + D T Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPSQDETTEQ 703 >gi|195143807|ref|XP_002012888.1| GL23684 [Drosophila persimilis] gi|194101831|gb|EDW23874.1| GL23684 [Drosophila persimilis] Length = 2893 Score = 47.3 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 13/182 (7%), Positives = 42/182 (23%), Gaps = 7/182 (3%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + E + V + + +K P + + + + Sbjct: 1072 ELEDRFNALERKMSVQKSSPAKTKKEPPDEEPDKEEPKARKEPAKEETKARKEPAEEEPK 1131 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 P + ++ + R+ + + + ++ V D Sbjct: 1132 ARKE-------PAREEPKARKEPEDSEIRDEKPQERRASKDSKDSEESNKRNETVKVKDR 1184 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + + +EP + + + E + S P Sbjct: 1185 TPTKTREEKEASKRVEPKPSGKDSPDTKVESEKAKKKPEPEKVENQEEPVKTARKSPPST 1244 Query: 714 KK 715 ++ Sbjct: 1245 EE 1246 >gi|328863036|gb|EGG12136.1| hypothetical protein MELLADRAFT_89392 [Melampsora larici-populina 98AG31] Length = 414 Score = 47.3 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 39/162 (24%), Gaps = 14/162 (8%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P T + P + + + + + + Sbjct: 170 PTPKNKPTPTPKLQPAPTPKAKPAPTPKAKPAPTPKAKPAPTPKAKPAPTPKAKPAPTPK 229 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF--- 686 + + +PAT + + +++ + S P + Sbjct: 230 NKPAPIPKNKPATQNTITRKSNQFVAVKQPLSPSPKNSAFPGSSVQKKSGLKSSQSSACH 289 Query: 687 -----------TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 TE S+PP + DPI +K++ Sbjct: 290 KRDSDEAFSSDTEQELASLPPTQKKSSSLAPVKKDPITRKSK 331 >gi|194374391|dbj|BAG57091.1| unnamed protein product [Homo sapiens] gi|221046052|dbj|BAH14703.1| unnamed protein product [Homo sapiens] Length = 552 Score = 46.9 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP + + P+P S Sbjct: 381 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 426 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668 + ++E+ ++ +R+R P G V + + Sbjct: 427 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 486 Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 EP + + + S P + S P ++ + Sbjct: 487 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 541 Score = 45.0 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 406 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 465 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 466 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 525 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 526 EPSRKPKRRRAADVEPSLPEPKR 548 >gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 509 Score = 46.9 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 14/180 (7%) Query: 545 RFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 G +I++V L F IE+ + P + + + Sbjct: 339 ETGKAISLVC--ALEAPELFAIERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPK 396 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 P + + ++ + + + + S+ + +DS Sbjct: 397 KPKKPK-----APNAEAAGSDASSKGNQKAKAADKPQGQNRGNGKAKRQFSAPKEGNNDS 451 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P N + P + P + +S K + ++ + Sbjct: 452 ANKGKRP------NTKGSKPANNANGKTHGKPSHAKPNSAKTGNSKPANGKPSAQRRKPR 505 >gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061] gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity [Xenorhabdus nematophila ATCC 19061] Length = 712 Score = 46.9 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 23/125 (18%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ ++ R + +R+EE+ + E G IY KVTR+ AFV GG Sbjct: 601 IAATDGDKARHAI---SRIEEITAEVE-------VGRIYTGKVTRIVDFG---AFVAIGG 647 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + T + Sbjct: 648 GKEGLVHISQIADKRVEKVTDYLQVGQEVPVKVLEIDRQGRIRLSMKEAVATTDEAPQSP 707 Query: 117 DHSLE 121 + S+E Sbjct: 708 ESSVE 712 >gi|297661470|ref|XP_002809264.1| PREDICTED: protein ELYS-like [Pongo abelii] Length = 2337 Score = 46.9 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 12/202 (5%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 ++ T + + NQ+ I+ + ++ V + + Sbjct: 1934 KVSSVTKRTPRRIKRSVENQESVEII-----NDLKVSTVTSPSRTIRKLRSANLDASENT 1988 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 N SD Q P + + + +LE Q + +E ++R R Sbjct: 1989 GNKQDDKSSDEQLPVKRIRRVRGREVSPS-DVREDSNLESSQLTLQAEFDMSATPRKRGR 2047 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 R+ P+ D + S + S + ++ G ++ Sbjct: 2048 PRKINPSEDVGSKAA-KEERSPKKKEAPSIKRRSTRNAPAKSENIDVGKPALGKSIL--- 2103 Query: 695 PPVSTPEMESSNSSSDPIVKKT 716 V E+ +S + KK+ Sbjct: 2104 --VPNEELLMVMNSKKKLTKKS 2123 >gi|310820718|ref|YP_003953076.1| hypothetical protein STAUR_3459 [Stigmatella aurantiaca DW4/3-1] gi|309393790|gb|ADO71249.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 468 Score = 46.9 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 11/151 (7%), Positives = 39/151 (25%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + +A K ++ + +++ + + ++ Sbjct: 213 QRQTEAEAKRQAEAKQREETARAQAEARKAAEDEEKRRQAEEAQAKRQAETEAKQRKQEE 272 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + RR + + ++ + + + E Sbjct: 273 ARAQAEARRTAEAEEKQRQKEEAEARRQAEVEAKQRKQEEARAQAEARRSAQAEETRRQQ 332 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 T + PP + +S+ + +KT Sbjct: 333 ETARVASAEPPAREEQGDSAAAPGISARRKT 363 >gi|115968343|ref|XP_001177996.1| PREDICTED: similar to tetratricopeptide repeat domain 14, partial [Strongylocentrotus purpuratus] Length = 1730 Score = 46.9 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 5/169 (2%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + I K Q S + E L + + Sbjct: 930 EGEEVKIGKKRSRSKSSPNRGFAEDRKQEKSDKHSKTREESPEKLSKSSRRSRSLSPRTK 989 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF-----DMYMEPSDI 673 E+ + R+R+R + ++ D + Sbjct: 990 KEEEKEQRTPIRERKRKRSGSFIAESSSLETARRDRKSRDGESDEEKLRHKKESEGETRN 1049 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + E+ + + S E + S+S P + + +RR Sbjct: 1050 RHDSSQESSHRSKSADTGKDKRKESPKESKKSHSKHSPSPPERKNDRRR 1098 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 2/144 (1%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 S + D+ DE L K E + S+ES+ + + +R+ Sbjct: 1013 AESSSLETARRDRKSRDGESDEEKLRHKKESEGETRNRHDSSQESSHRSKSADTGKDKRK 1072 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + S +D E + + E S Sbjct: 1073 ESPKESKKSHSKHSPSPPERKNDRRRSKEEAKQNRYSRSSRSTSADVDERKQRSKSGSYD 1132 Query: 700 PEMESSNSSSDPIVKKTRWWKRRK 723 + + + K R RR+ Sbjct: 1133 RDKDKEHDRRSED--KDRDGNRRE 1154 >gi|329889113|ref|ZP_08267456.1| RNA-binding S1 domain-containing protein [Brevundimonas diminuta ATCC 11568] gi|328844414|gb|EGF93978.1| RNA-binding S1 domain-containing protein [Brevundimonas diminuta ATCC 11568] Length = 336 Score = 46.9 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%) Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 + + +T AL+++D++ + N E + AR L L+ GL+ +D + Sbjct: 165 LAVQRTRALIAVDIDYAPAA-GRDSRKGREAVNREGLRQTARLLALKGWGGLVAIDLAGV 223 Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 + + +++ D A +G +S FGLL++S R+ E Sbjct: 224 GL--HPETTLFMARQAFA-DHAGAAIGPLSRFGLLQLSLPWGRTPADERLAAP 273 >gi|8163636|gb|AAF73775.1|AF154008_1 surface protein PspC [Streptococcus pneumoniae] Length = 509 Score = 46.9 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 80/294 (27%), Gaps = 20/294 (6%) Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQ--VGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 M+ K +K+ ++ DR + VG + G ++ R S E +T Sbjct: 61 MKAAKQVDEYIEKMLSEIQLDRRKHTQNVGLLKKLGAIKTEYLRGLSVSKEKSTAELPS- 119 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 I+ + + A + + +K+A + E R Sbjct: 120 ----EIKEKLTAAFEQFKKDTLKSGK-KVAEAQKKVEEAQKKVAEAEKKAKDQKEEDRRN 174 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 N +EL F + + V +++ P + I+ + Sbjct: 175 YPTNTYKTLELEIAEFDV------KVKKAELKLVKEEAREPRDEGTIKQAKAEVESKKAE 228 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + + D + E + + + +PA A + + Sbjct: 229 ATRLEKIKTDRKKAAEEEAKRKAAEEDKVKEKPAEQQQPAPAPQPEKPAPKPENPAEQPK 288 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E E +E + P+ E + P KT W + Sbjct: 289 AEKPA---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGWKQE 336 >gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 721 Score = 46.9 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 607 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 653 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + P Sbjct: 654 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPAAAPE 713 Query: 117 DHSLEEVA 124 + E+ Sbjct: 714 APTSEQGE 721 >gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 46.9 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + P Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPAAAPE 703 Query: 117 DHSLEEVA 124 + E+ Sbjct: 704 APTSEQGE 711 >gi|322699711|gb|EFY91470.1| DNA mismatch repair protein msh6 [Metarhizium acridum CQMa 102] Length = 1220 Score = 46.9 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 5/150 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + S SQ +DE S+ ED + ++ + + + Sbjct: 152 AESSDDEEPFNYSSRSQTRRGRARRTVKDEDEFDEDGVASQEEEDDMGDFIASDDSNDLP 211 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + ++R+R + AT + V + Q I D D M T+ N TE Sbjct: 212 RTKKRKRPAKAATARKRSNVSPPADTRQESPIHDVDDELMTDIPTTSTTSQWNYDPESTE 271 Query: 689 NYDVSIP----PVSTPEMESSNSSSDPIVK 714 V P P+ + + +P + Sbjct: 272 KRPVVTPAERAAAKDPKRKEKAHTKEPEDR 301 >gi|326479994|gb|EGE04004.1| hypothetical protein TEQG_03037 [Trichophyton equinum CBS 127.97] Length = 661 Score = 46.9 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 1/147 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A V P+ + E V + L +S + D +E T RKR+ Sbjct: 172 APAPETEPVKEPVPEPAQEPVQEPVQEPVQELVKDESVNKSPSADIEAIKEDTDESRKRK 231 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 RR + P+ Q ++ +E A D Sbjct: 232 RRSQTPPPSPRSIALKKARLEEEQQQSRPAQEEIKVEERKEEQEAPAAAPAVAEPSARDT 291 Query: 693 SIP-PVSTPEMESSNSSSDPIVKKTRW 718 + TP ++ K R Sbjct: 292 DVEMKEGTPPAPEPKQGAEEDESKDRV 318 >gi|326468526|gb|EGD92535.1| hypothetical protein TESG_00108 [Trichophyton tonsurans CBS 112818] Length = 661 Score = 46.9 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 1/147 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A V P+ + E V + L +S + D +E T RKR+ Sbjct: 172 APAPETEPVKEPVPEPAQEPVQEPVQEPVQELVKDESVNKSPSADIEAIKEDTDESRKRK 231 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 RR + P+ Q ++ +E A D Sbjct: 232 RRSQTPPPSPRSIALKKARLEEEQQQSRPAQEEIKVEERKEEQEAPAAAPAVAEPSARDT 291 Query: 693 SIP-PVSTPEMESSNSSSDPIVKKTRW 718 + TP ++ K R Sbjct: 292 DVEMKEGTPPAPEPKQGAEEDESKDRV 318 >gi|212532871|ref|XP_002146592.1| DNA ligase Cdc9, putative [Penicillium marneffei ATCC 18224] gi|210071956|gb|EEA26045.1| DNA ligase Cdc9, putative [Penicillium marneffei ATCC 18224] Length = 862 Score = 46.9 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 2/147 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + D N + + K + + S++S Sbjct: 40 RRKEKTTSDKPVKEPKESEGQDDMDLNGDASAANNGSTSPTKGVKRDQSAEAEESDDSDI 99 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++RR+ + P +V++ S V + + + + A Sbjct: 100 QPATKKRRKNAKSPRPRKSAKEIVAERPSSPKVSKKASGEVTPVEEDADEPAEDPSASEE 159 Query: 687 TENYDVSIPP--VSTPEMESSNSSSDP 711 E+ I + + ++ +DP Sbjct: 160 DEDEKPEIKKKQIEKVQATLKSTGNDP 186 >gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] Length = 558 Score = 46.5 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 55/228 (24%), Gaps = 16/228 (7%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 A + + I D + Y ++ E E + + Sbjct: 321 DVPHDAEDYVHRIGRTARADRDGAAITLVSKDDIYYFQQIEKFLEKEVE-----KVEL-P 374 Query: 555 GIELADKLFYIE--------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 + + V+ + ++ + V Sbjct: 375 EELGEAPDYTADGKPQRKRSSAKSVRRKNRDQTAHKRKPRRNKNEQRPKEVDAKSEQTNE 434 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 +++ D ++ +++ RR+++ Q + + + D Sbjct: 435 KQAQERSKTADKQPAKNRQKSNKRKNNRRKQQNNTDGAGTQRNKQRNDKRQAIDNKTGDK 494 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 ++P T + L + P + E + + + P Sbjct: 495 QVQPQANTKNKLRRKPNNNR--KTQREDPHNGRRKFEPAKTETKPESG 540 Score = 41.5 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 38/155 (24%), Gaps = 5/155 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 ++ LV+ +K +E V E L P + + + ++ Sbjct: 340 DRDGAAITLVSKDDIYYFQQIEKFLEKEVEKVELPEELGEAPDYTADGKPQRKRSSAKSV 399 Query: 625 TGVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 R + +R+ RR + V + + N Sbjct: 400 RRKNRDQTAHKRKPRRN-KNEQRPKEVDAKSEQTNEKQAQERSKTADKQPAKNRQKSNKR 458 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + T + N I KT Sbjct: 459 KNNR-RKQQNNTDGAGTQRNKQRNDKRQAIDNKTG 492 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 11/168 (6%), Positives = 38/168 (22%), Gaps = 2/168 (1%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 + + + + D + + K E E++ Sbjct: 319 NYDVPHDAEDYVHRIGRTARADRDGAAITLVSKDDIYYFQQIEKFLEKEVEKVELPEELG 378 Query: 617 DNIV-SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + + + ++ + RR+ + Q + Sbjct: 379 EAPDYTADGKPQRKRSSAKSVRRKNRDQTAHKRKPRRNKNEQRPKEVDAKSEQTNEKQA- 437 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + +N S + + +N+ + + +R+ Sbjct: 438 QERSKTADKQPAKNRQKSNKRKNNRRKQQNNTDGAGTQRNKQRNDKRQ 485 >gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae Eb661] gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae Eb661] Length = 714 Score = 46.5 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 23/118 (19%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTI 114 + G + +I DY Q+ +L+ + + Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQAAEPEA 701 >gi|311740843|ref|ZP_07714670.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304363|gb|EFQ80439.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 1274 Score = 46.5 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 11/168 (6%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K Q + +Q P K + + P P + ++ G Sbjct: 308 KPQKSQPANSKPATGQQQAQKPDSPKRVPANSAKKQPQPQPAPKKNAQPSKPSQPQKGQG 367 Query: 627 VIR-----KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 R K++ + P+ G + + + + + N + Sbjct: 368 SARTPETAKQKAGPQASAPSAPKPKKGTTAPTPKVASPKTAADASQQKARSTQNKTTQDG 427 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK------KTRWWKRRK 723 ++ + + P+ E+ P K KT+ +R+ Sbjct: 428 NKVVQPKSQQGAPSKGNLPKQEAKTQQPQPKAKEATPQNKTKKATKRR 475 >gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 3655] gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 3655] Length = 709 Score = 46.5 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 27/134 (20%) Query: 7 IDASHVEETRVVVLRD-------NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA--- 56 ID ++ + R+EE+ E E G IY KVTR+ A Sbjct: 586 IDIDDDGTVKIAAVDGNAAKNVMGRIEEIVAEVE-----AGAIYKGKVTRL-----ADFG 635 Query: 57 AFVDYGGNRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109 AFV GN+ G + +I DY Q+ +++ + Sbjct: 636 AFVAIVGNKEGLVHISQIAEERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQ 695 Query: 110 GDVTIPNDHSLEEV 123 D E+ Sbjct: 696 ETEINQEDPVEEQE 709 >gi|291575122|ref|NP_569731.2| putative NPIP-like protein KIAA0220-like [Homo sapiens] Length = 1133 Score = 46.5 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP + + P+P S Sbjct: 962 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 1007 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668 + ++E+ ++ +R+R P G V + + Sbjct: 1008 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1067 Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 EP + + + S P + S P ++ + Sbjct: 1068 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1122 Score = 44.6 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 987 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 1046 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 1047 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1106 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 1107 EPSRKPKRRRAADVEPSLPEPKR 1129 >gi|327303420|ref|XP_003236402.1| DNA ligase I [Trichophyton rubrum CBS 118892] gi|326461744|gb|EGD87197.1| DNA ligase I [Trichophyton rubrum CBS 118892] Length = 889 Score = 46.5 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 37/153 (24%), Gaps = 4/153 (2%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F + S + + K + V P+ ++ +I Sbjct: 33 FSSKSSSSKNDEAKERDDETVEEAPQTPQKQVGRVGSKRTPPPVDDADVDGEILSGGEKS 92 Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ES + +R++R+ + +D S N S Sbjct: 93 ESVSPVTRRQKRKEAVATKGDEESDEQPVTKRRRRSPKSNTKAKSPVNGGRSKVAATDEP 152 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 E S S E+E + P Sbjct: 153 SPTNIKSDAEPELSSAEENSASEIEEDDIDDKP 185 >gi|270010403|gb|EFA06851.1| hypothetical protein TcasGA2_TC009794 [Tribolium castaneum] Length = 1540 Score = 46.5 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 39/141 (27%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 A + + + D+ P SE+ + ++ + E + R Sbjct: 382 SEEMAEDALNLLNSDKDDSDDKEEAPEENSENSDKEKNGKETAEKNLENEESVERPENVP 441 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 A +V + ++ N +NG+ ++ + Sbjct: 442 DKDPLEIANNSENVDKPDEASEKDPTNETNENEQDNTEKNDNGSEKTNDDQSEKEANDKS 501 Query: 700 PEMESSNSSSDPIVKKTRWWK 720 E S+ + K RW K Sbjct: 502 DEGSKSDENKIEEKSKKRWRK 522 >gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17] gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17] Length = 579 Score = 46.5 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 16/192 (8%), Positives = 44/192 (22%), Gaps = 11/192 (5%) Query: 538 TIVEYEARFGVSINVVIGIEL--ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + E + + + + S + + Sbjct: 356 HFQQIEKFLEKEVEKIPLPADLGEAPEY-----ARQSRPSKGRTTAKSRRRKDRDQQAHR 410 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 ++ P+ + + + E + + RR RR+ + S+ Sbjct: 411 HKPNNQRRPARPEQDKEREAARPANAAEQSAGDKPRRNRRQSEARLAEGKPTEEKQTESN 470 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHG----FTENYDVSIPPVSTPEMESSNSSSDP 711 + +P N A N + + + + ++ Sbjct: 471 PTANRQPRQENDRQPDKSGRGNRNRRNAKSAGGDSNRNGNRPADAENRMDADKPRRGNNR 530 Query: 712 IVKKTRWWKRRK 723 K+ RR+ Sbjct: 531 NRKRGNGRDRRQ 542 >gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0010_16J05] Length = 718 Score = 46.5 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74 NR++E+ E+E G IY KV R+ AFV+ + G L +I Sbjct: 627 NRIQEITAEAE-----VGRIYKGKVERIVDFG---AFVNILPGKDGLLHISQI 671 >gi|303234076|ref|ZP_07320725.1| hypothetical protein HMPREF9289_0713 [Finegoldia magna BVS033A4] gi|302495001|gb|EFL54758.1| hypothetical protein HMPREF9289_0713 [Finegoldia magna BVS033A4] Length = 767 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 20/230 (8%), Positives = 60/230 (26%), Gaps = 9/230 (3%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 + Q S++R + ++ L + +E E + + + Sbjct: 148 KQQKKFDESLIRQESIESDLNKTKTEVGQFRDELKDVLTTE--NARIEAEKKRVSAEQIR 205 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 E + I + S A + S+ Q +++ + + + ++ E Sbjct: 206 SNQEEVRQQLEITRQSSENARQSNESTRQSNEQQRQAEESTRKSEEQKRITAETNRDNAE 265 Query: 614 DIQDNIVSEESTGVIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 +D+ ++ + R + Q V + Sbjct: 266 TKRDSAEKIRIENENKRISAEKTRAENDATYNKNEQQRQSQESTRQTQEQQRVDAEKLRQ 325 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E + + + + N + + +N +++ Sbjct: 326 SQENTRKQSEDTRNSQEKTRQSNEESREDEETERYNAETNREKSEKTRQS 375 >gi|237712939|ref|ZP_04543420.1| transcription termination factor rho [Bacteroides sp. D1] gi|262409618|ref|ZP_06086158.1| transcription termination factor Rho [Bacteroides sp. 2_1_22] gi|294643469|ref|ZP_06721282.1| transcription termination factor Rho [Bacteroides ovatus SD CC 2a] gi|294807913|ref|ZP_06766694.1| transcription termination factor Rho [Bacteroides xylanisolvens SD CC 1b] gi|229447058|gb|EEO52849.1| transcription termination factor rho [Bacteroides sp. D1] gi|262352471|gb|EEZ01571.1| transcription termination factor Rho [Bacteroides sp. 2_1_22] gi|292641188|gb|EFF59393.1| transcription termination factor Rho [Bacteroides ovatus SD CC 2a] gi|294444911|gb|EFG13597.1| transcription termination factor Rho [Bacteroides xylanisolvens SD CC 1b] Length = 752 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 13/163 (7%), Positives = 37/163 (22%), Gaps = 1/163 (0%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 ++ ++ S + K V + + ++ Sbjct: 63 NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122 Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E+ KR+ R R+ + + V+ + + + Sbjct: 123 AKAENATTAPKRKVGRPRKSADTEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPI 182 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + A ++ + E + I K + Sbjct: 183 QQPTAEKKAKSKPAAETNKPAAEANKPVAEKKVIDKPQKKAAP 225 >gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii str. Madrid E] gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia prowazekii] Length = 745 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 19/156 (12%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 I AS ++ ++ + ++++ + E E G I+ V +V S AF++Y GN+ Sbjct: 598 IYASDRDKIKIAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKD 647 Query: 67 GFLPFLEIHPDYYQIPFSD--------RQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 GF+ EI D S + L+ N + H + Sbjct: 648 GFVHISEI-SDARIDKVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNAYKDHSSNNTKQKN 706 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 ++++ + +++ + NN +S V + Sbjct: 707 NVKDDSESEQRRDTSKKRTWNEDNNTEMSEVITERK 742 >gi|325203787|gb|ADY99240.1| IgA-specific serine endopeptidase [Neisseria meningitidis M01-240355] Length = 1777 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 27/267 (10%), Positives = 53/267 (19%), Gaps = 20/267 (7%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521 + +I A + Q + A + R E + Sbjct: 998 QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1057 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 ++ ++ + E R + + +A Sbjct: 1058 REARELATRQKAEQERSSAELARRHKK----------EREAAELSAKQKAEAEREAQALA 1107 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640 K +E + T + +R R+RR P Sbjct: 1108 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1166 Query: 641 ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 A+ NV + E A E + Sbjct: 1167 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1226 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E+ + R RK Sbjct: 1227 AAHRKAEAEEAKRQAAELAHRQEAERK 1253 >gi|115725233|ref|XP_791418.2| PREDICTED: similar to tetratricopeptide repeat domain 14, partial [Strongylocentrotus purpuratus] Length = 1698 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 5/169 (2%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + I K Q S + E L + + Sbjct: 919 EGEEVKIGKKRSRSKSSPNRGFAEDRKQEKSDKHSKTREESPEKLSKSSRRSRSLSPRTK 978 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF-----DMYMEPSDI 673 E+ + R+R+R + ++ D + Sbjct: 979 KEEEKEQRTPIRERKRKRSGSFIAESSSLETARRDRKSRDGESDEEKLRHKKESEGETRN 1038 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + E+ + + S E + S+S P + + +RR Sbjct: 1039 RHDSSQESSHRSKSADTGKDKRKESPKESKKSHSKHSPSPPERKNDRRR 1087 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 2/144 (1%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 S + D+ DE L K E + S+ES+ + + +R+ Sbjct: 1002 AESSSLETARRDRKSRDGESDEEKLRHKKESEGETRNRHDSSQESSHRSKSADTGKDKRK 1061 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + S +D E + + E S Sbjct: 1062 ESPKESKKSHSKHSPSPPERKNDRRRSKEEAKQNRYSRSSRSTSADVDERKQRSKSGSYD 1121 Query: 700 PEMESSNSSSDPIVKKTRWWKRRK 723 + + + K R RR+ Sbjct: 1122 RDKDKEHDRRSED--KDRDGNRRE 1143 >gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae MTU5] gi|187611281|sp|A8F1P3|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae MTU5] Length = 745 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 27/166 (16%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 I AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ Sbjct: 598 IYASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKD 647 Query: 67 GFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126 GF+ EI +E + D V + N + Sbjct: 648 GFVHISEIS---------------EERIETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKN 692 Query: 127 ANFS--QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCI 170 A+ + + +N D + + I Sbjct: 693 ADKDKSSNNTKPKTNAKDNSEPEQRRDSSKKRAWNEDNNAETAEVI 738 >gi|15965621|ref|NP_385974.1| hypothetical protein SMc00141 [Sinorhizobium meliloti 1021] gi|15074802|emb|CAC46447.1| Hypothetical protein SMc00141 [Sinorhizobium meliloti 1021] Length = 671 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 38/143 (26%), Gaps = 2/143 (1%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + +SQ + ++ + Q + + + +++ +R++R Sbjct: 3 KRKQRQAEEESQGQAEEQQPQAEEQQTPRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKR 62 Query: 635 RR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 ++ +PA + + + + + + E Sbjct: 63 QQQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKRQQQA 122 Query: 693 SIPPVSTPEMESSNSSSDPIVKK 715 P + +P K+ Sbjct: 123 EEQPAAEESAPQQAEEQEPTRKR 145 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 11/148 (7%), Positives = 43/148 (29%), Gaps = 6/148 (4%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + ++ Q + + + ++ + ++ E + + RR++R Sbjct: 31 RKKRQQQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKR 90 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 + + ++ S+ Q +++ E A E + + Sbjct: 91 Q------QQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEQEPTRK 144 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E ++ + ++ + + Sbjct: 145 RRQQQAEEQQPAAEEGAPQQAEEQEPTR 172 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 9/124 (7%), Positives = 37/124 (29%), Gaps = 3/124 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + +A + ++ Q + + + ++ + ++ E + + Sbjct: 50 QQAEEEAPRRKKRQQQAEEQPAAEESAPQQAEEEAPRRKKRQQQAEEQPAAEESAPQQAE 109 Query: 627 VIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 RR++R+++ +PA + + + + ++ E Sbjct: 110 EEAPRRKKRQQQAEEQPAAEESAPQQAEEQEPTRKRRQQQAEEQQPAAEEGAPQQAEEQE 169 Query: 684 HGFT 687 Sbjct: 170 PTRK 173 >gi|332024785|gb|EGI64973.1| RNA polymerase-associated protein CTR9-like protein [Acromyrmex echinatior] Length = 1225 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 56/216 (25%), Gaps = 6/216 (2%) Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 + + E + H L +++ + E + Sbjct: 798 HGDRMEQLAEAEARRCQDLLSQAQYHVARARRLDEEEKMLRRKQEEERQAFKMRQTEEQR 857 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + +K + + ++ + + + + + + D+ Sbjct: 858 KLEEMRRQKEEEMLQKRQEYVEKTKNALVFGEMPSEK------PGKKGKRLRTDQYVSDS 911 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 S+ G + R+R+R+P+++ D ++ +S +P Sbjct: 912 GGSDRDEGREEIPKERKRKRKPSSETKDRKSKGKGRRRKDESGNSGSDSDQPKRKRGKKN 971 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + + S S SD Sbjct: 972 ARTKKEKTRKVVETLKGKLVKSKETISTSESDSDTG 1007 >gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii Rp22] Length = 745 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 19/156 (12%) Query: 7 IDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRH 66 I AS ++ ++ + ++++ + E E G I+ V +V S AF++Y GN+ Sbjct: 598 IYASDRDKIKIAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKD 647 Query: 67 GFLPFLEIHPDYYQIPFSD--------RQALLKESNIAQTDSEAVADDVTHGDVTIPNDH 118 GF+ EI D S + L+ N + H + Sbjct: 648 GFVHISEI-SDARIDKVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNAYKDHSSNNTKQKN 706 Query: 119 SLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 ++++ + +++ + NN +S V + Sbjct: 707 NVKDDSESEQRRDTSKKRTWNEDNNTEMSEVITERK 742 >gi|237830209|ref|XP_002364402.1| hypothetical protein TGME49_111700 [Toxoplasma gondii ME49] gi|211962066|gb|EEA97261.1| hypothetical protein TGME49_111700 [Toxoplasma gondii ME49] gi|221507273|gb|EEE32877.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1280 Score = 46.5 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 8/146 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G +D + S + V +DE P + E + ++ + TG Sbjct: 554 RGKSSARSEVED---SADERQASKKRGRGPVDEDEESSPGDEGEDAKRVRPVGRGRKQTG 610 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + RR R + + +D + P N Sbjct: 611 ASPRNTNKARRTRE-----KGAARRGTGATEPRRNDEAGEFNGPDAAANQAPFGFTKREE 665 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712 + P + E NS + Sbjct: 666 AQQGLQDSPGLPPRNAEPGNSRRERA 691 >gi|115384626|ref|XP_001208860.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114196552|gb|EAU38252.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1697 Score = 46.5 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 43/164 (26%), Gaps = 16/164 (9%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + ++ + P +K + P + E Q+ + ++ Sbjct: 33 AKATTADDSQASDNEGGERPVRNKLRDTSITSAPKPPTATEPAAEKTQEGSENSRASSRG 92 Query: 629 RKRR---------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 RKR RR+R R + + +A + QN D + + Sbjct: 93 RKRSLDEDQPEMDEDDAGHRRKRSRDNSYEEENAAS-KESEQAQNPEDAAEKILSPKKKR 151 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + L + + E P K+ R Sbjct: 152 SRDQLDKEEPKPEGAAEKAVDVAEDSKPTEKVAEDGQPEKKRHR 195 >gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] Length = 572 Score = 46.5 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 4/159 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES-- 624 K + + Q S D+N + ++ + + ++ + E+S Sbjct: 409 KDKKQGGNKQRSRRPTAQDQNVSDDRNTDKQERETSDRQNGNKQKQQENRPEATEEKSGD 468 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ--NVIDDSFDMYMEPSDITNHNLLENG 682 R+ + R++ R+P D SS +N Sbjct: 469 KKNGRQSKGRQQDRQPKADKEKRTGRKPASSRDAAEKNTAQQAKKPNSRHKKRNNRQRTP 528 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 P + S ++KK W R Sbjct: 529 EEKAVRRSTKYDIREELPTASKNGSGLKALIKKPLKWLR 567 >gi|215274263|sp|Q92617|NPPL3_HUMAN RecName: Full=Nuclear pore complex-interacting protein-like 3; AltName: Full=Protein pps22-1 Length = 1050 Score = 46.5 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP + + P+P S Sbjct: 879 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 924 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668 + ++E+ ++ +R+R P G V + + Sbjct: 925 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 984 Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 EP + + + S P + S P ++ + Sbjct: 985 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1039 Score = 44.2 bits (102), Expect = 0.071, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 904 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 963 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 964 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1023 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 1024 EPSRKPKRRRAADVEPSLPEPKR 1046 >gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae SCF1] gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae SCF1] Length = 711 Score = 46.5 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 20/111 (18%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 DY Q+ +L+ + P E+ Sbjct: 661 KVTDYLQMNQEVPVKVLEVDRQGRIRLSIKEATEQSQPAVAPEAPVAEQGE 711 >gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] Length = 579 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 16/192 (8%), Positives = 43/192 (22%), Gaps = 11/192 (5%) Query: 538 TIVEYEARFGVSINVVIGIEL--ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + E + + + S + + Sbjct: 356 HFQQIEKFLEKEVEKIPLPADLGEAPEYT-----RQSRPSKGRTTAKSRRRKDRDQQAHR 410 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 ++ P+ + + + E + + RR RR+ + + Sbjct: 411 HKPNNQRRPARPEQDKEREAARPANATEQSAGDKPRRNRRQSEARLAEGKPTEEKQTEGN 470 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHG----FTENYDVSIPPVSTPEMESSNSSSDP 711 + +P N A N + + + + S++ Sbjct: 471 PTANRQPRQESDRQPDKSGRGNRNRRNAKSAGGDSNRNGNRPADAENRMDADKPRRSNNR 530 Query: 712 IVKKTRWWKRRK 723 K+ RR+ Sbjct: 531 NRKRGNGRDRRQ 542 >gi|332185481|ref|ZP_08387229.1| hypothetical protein SUS17_705 [Sphingomonas sp. S17] gi|332014459|gb|EGI56516.1| hypothetical protein SUS17_705 [Sphingomonas sp. S17] Length = 317 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 31/187 (16%) Query: 369 GYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFI 428 G + + T A+ DV+ I A+ + + G I +DF Sbjct: 157 GVLRMTPTPAMTLFDVDGSPPHEPLSIAAARAV---------AQAILRHGIGGSIGIDFP 207 Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488 +E K ++V + L +L R V + FG L++ R R R+S+ E Sbjct: 208 TLEGKAPRQAVAEALDATLPLPFERTAV---NGFGFLQIVRPRPRASIPERLGID----- 259 Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN--QKRATIVEYEARF 546 + A ++LR E + + L+ + R I R Sbjct: 260 ------PIGARARALLRQWERE---PPGPAPVHRLPGPLYDRLMATPEWRDAIA---RRT 307 Query: 547 GVSINVV 553 G + + Sbjct: 308 GRPLQLE 314 >gi|302772322|ref|XP_002969579.1| hypothetical protein SELMODRAFT_410367 [Selaginella moellendorffii] gi|300163055|gb|EFJ29667.1| hypothetical protein SELMODRAFT_410367 [Selaginella moellendorffii] Length = 232 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 37/110 (33%) Query: 410 IARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSR 469 + RLR + G+IVVD + FGL+EM+R Sbjct: 140 CRLRQRLRGIGGIIVVDTEGPK------------------------------FGLMEMTR 169 Query: 470 QRIRSSVLEST-------TKVCTYCKGAGYIRSQSSVALSILRSVEEYLL 512 R+ L + T C C G G I S I R Sbjct: 170 ARVSLVDLIWSFQDRLSVTDSCGCCGGTGRIESVEMTLSKIERRSWPTGR 219 >gi|194383244|dbj|BAG64593.1| unnamed protein product [Homo sapiens] Length = 833 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 21/175 (12%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP + + P+P S Sbjct: 662 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDN 707 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668 + ++E+ ++ +R+R P G V + + Sbjct: 708 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 767 Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 EP + + + S P + S P ++ + Sbjct: 768 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 822 Score = 44.2 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 687 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 746 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 747 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 806 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 807 EPSRKPKRRRAADVEPSLPEPKR 829 >gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH 391-98] Length = 710 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 11/101 (10%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH-------PDYYQI 81 E ++ G IYL KV R+E AFV+ + G + E+ D +I Sbjct: 613 IEDIVREVQVGEIYLGKVKRIEKFG---AFVELFSGKDGLVHISELALERVGKVEDVVKI 669 Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEE 122 +++ + + + + + + +E Sbjct: 670 GDEISVKVIEIDKQGRVNLSRKVLLKEEQEKEVAKEEATQE 710 >gi|116748796|ref|YP_845483.1| hypothetical protein Sfum_1357 [Syntrophobacter fumaroxidans MPOB] gi|116697860|gb|ABK17048.1| hypothetical protein Sfum_1357 [Syntrophobacter fumaroxidans MPOB] Length = 784 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 46/161 (28%), Gaps = 2/161 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLEDIQDNIVSE 622 ++ P + + G + P + E + +DE P Q ++ Sbjct: 569 QLQPARPGEQVQPGRPGTGREVSEPRGPRQPEQRIKRDEPSQQGPGQRPQLQDQRRPPAQ 628 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + I+ + ++ +RR P V + Q ++ + Sbjct: 629 DDRRTIKPQEQQPQRR-PDMQEQKRPGVQEQRRPQMQEQRRPEVQEQRRPQVQEQRRPPA 687 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P PE++ ++ + ++R+ Sbjct: 688 QDDRRTIKPQEQQPQRRPEVQEQRRPQVQEQRRPQMQEQRR 728 Score = 46.1 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 3/149 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P Q + Q P QD+ P+ + + D + Sbjct: 598 QPEQRIKRDEPSQQGPGQRPQLQDQRRPPAQDDRRTIKPQEQQPQRRPDMQEQKRPGVQE 657 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++R + + +RRP V + D E + E E Sbjct: 658 QRRPQMQEQRRPEVQEQRRPQVQEQRRPPAQDDRRTIKPQEQQPQRRPEVQEQRRPQVQE 717 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + P+++ P +++ R Sbjct: 718 QRRPQMQEQRRPQVQE---QRRPQMQEQR 743 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 3/151 (1%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 I++ P Q ++ + P+ D + + P + + E + + Sbjct: 598 QPEQRIKRDEPSQQGPGQRPQLQDQRRPPAQDDR--RTIKPQEQQPQRRPDMQEQKRPGV 655 Query: 620 VSEESTG-VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + ++R + +RRP D + E + + Sbjct: 656 QEQRRPQMQEQRRPEVQEQRRPQVQEQRRPPAQDDRRTIKPQEQQPQRRPEVQEQRRPQV 715 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 E E + P+M+ + Sbjct: 716 QEQRRPQMQEQRRPQVQEQRRPQMQEQRPGA 746 >gi|221486983|gb|EEE25229.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2084 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 50/185 (27%), Gaps = 4/185 (2%) Query: 534 QKRATIVEYEARFGVSINVVI-GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 KR + EA G E + + G + G D Sbjct: 1613 HKRGEVTREEADTGKEAQGRGSEDEARASEAETNRAIAAGEELERGKEQGMSKGDEDPDM 1672 Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 ++ + + + E+ K RR+R+R + D + Sbjct: 1673 EEPRAGEETRQSQDDERRRPDGHRGGDEEEQEREKPAKERRKRQRPENSEGEKD---MQR 1729 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + S +P E+ E+ + +P ++E S + Sbjct: 1730 EQTSERADAPSQAATKKPRGCRPEVRTEDEKRREGESDEDEVPAHDGDDLEESRRPEEDG 1789 Query: 713 VKKTR 717 + TR Sbjct: 1790 EEATR 1794 >gi|308484221|ref|XP_003104311.1| hypothetical protein CRE_24950 [Caenorhabditis remanei] gi|308258280|gb|EFP02233.1| hypothetical protein CRE_24950 [Caenorhabditis remanei] Length = 956 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 5/153 (3%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + T V S S + + Q EA P + + L++ + SE+ R+ Sbjct: 695 DEKKIKTKSAVPSTSTSMPSTSDASKTKQKEATGPSRRMKQLDESSADSESEDDDKSKRQ 754 Query: 631 RRRRRRRRRPATDHH---DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++ RR R V+D + + + P N + Sbjct: 755 KKVRRSTRTAKASSPIPAKRKKVADDDMDEGSEEVQDESKATPRGNGNAVRRKTLKRANA 814 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 E P S E + + P K+ R Sbjct: 815 EEQKP--PRRSMKEKVEAETEEPPKKKRGRVRP 845 >gi|209695337|ref|YP_002263266.1| electron transport complex protein RnfC [Aliivibrio salmonicida LFI1238] gi|208009289|emb|CAQ79555.1| electron transport complex protein RnfC [Aliivibrio salmonicida LFI1238] Length = 716 Score = 46.5 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 28/246 (11%), Positives = 60/246 (24%), Gaps = 9/246 (3%) Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 S+ E C C Y+ + R + + ++ Sbjct: 403 SKSEDYEKCEEYHLSDCIECGACAYVCPSEIPLVQYYRQAKSEIYARKQDSLA--ADRAK 460 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 V + R + E + E K EK + +Q Sbjct: 461 VRFEEKNARMERDKLERENKFKLA----AENRRKEMSTEKPAGSGNDAIAAAIARVKAQK 516 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 + + I A + + + + K R R++ A D Sbjct: 517 AAEESGIASPKPAVAAAIARAKAKQAEATKDHSGDPDNSEMAK--LREERKQQARDRKAK 574 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 + + +S + + + + TE S + + ES++ Sbjct: 575 QELENTTSTNE-ENSPNKTEKKDAVAAAIARAKARKAAQTEKDAPSSNAETKTKPESTSD 633 Query: 708 SSDPIV 713 + P Sbjct: 634 NETPTE 639 >gi|281208823|gb|EFA82998.1| hypothetical protein PPL_03778 [Polysphondylium pallidum PN500] Length = 1705 Score = 46.1 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 43/397 (10%), Positives = 113/397 (28%), Gaps = 33/397 (8%) Query: 348 RSGIEVQLDSLHQTEVTLPSRGYVIINQ-----------------TEALVSIDVNSGRST 390 + ++ + + L +NQ T + ++N + Sbjct: 42 KESMKNYVQKALNIAIPLKENNANRLNQQANLNGVAGSKASCEIFTGEVTKEELNVVKKL 101 Query: 391 REHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL--- 447 + +N A + R ++RD A I+ + +N K+K + Sbjct: 102 GKRRNTLFIRDSNSSAVVQAERDSQIRDTAASIITGAVKARAARNR---FIKMKSAAVLI 158 Query: 448 ----KKDRARVQVGAISNFGL--LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 + R R + + + + R RI+ S + K L Sbjct: 159 QSVYRSHRQRSEFLTKRSAAIKIQSLVRMRIQRKSYLSQLQQIKLEKVRLEQERIEKERL 218 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 R +E + + + + L Q+R + E + + +A + Sbjct: 219 EQERLEQERIEKERLEQERLEQ-ERIENERLEQERIAAEKLEQERIAAEKLAEEERIATE 277 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 E+ + + + + + +K E +L + + + Q+ I + Sbjct: 278 KHEQERLAAEKLEQERIAAEKLEQERIAAEKLAEEERIAAEMLEQERIAAEKMEQERIAA 337 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E+ R + + R A + + ++ + I + Sbjct: 338 EKLAEEERIAAEKLEQERIAAEKLEEERIAAEKLAEERIAAEKMEQERIAAEKLEQERIA 397 Query: 682 GAHGFTENYDVSI---PPVSTPEMESSNSSSDPIVKK 715 E ++ ++E +++ + ++ Sbjct: 398 AEKLEQERIAAEKLEQERIAAEKLEQERIAAEKLEQE 434 >gi|110005909|gb|ABG48500.1| titin a [Danio rerio] Length = 32757 Score = 46.1 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 47/231 (20%), Gaps = 20/231 (8%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 L + E ++ V TH + ++ + I Sbjct: 10377 LDTGEPESVKLKPFEKPVKTHPETEKDTKKDEKGREPATFDKSREPITFQKEERPLKD-- 10434 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNI 619 EK + V D + P + +P E I Sbjct: 10435 --EKTKEIDVPVKKEKPSIPDKKEPDEVSVKAVTRPAKDEVPTEPKEKLVKGKGKIPSKD 10492 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--DITNHN 677 E + ++ + + + D+ EPS + Sbjct: 10493 QEPEKVQLKPFTKKPSAGSPKEKEAAEPKDRKPIELSPLSRAPKDDIKKEPSIPTKKIDS 10552 Query: 678 LLENGAHGFTENYDVSIPPVST----------PEMESSNSSSDPIVKKTRW 718 E +P ++ PIV K Sbjct: 10553 QETPDKAKEVEKISTPVPVEDKTTPPKKVTPVKKITPKEDEKKPIVIKKGV 10603 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 50/180 (27%), Gaps = 7/180 (3%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 I++ E+ K + + + +P D+ I + D L Sbjct: 8498 KKDIHLTKDEEIVPPK----KKATIPDKKDEAVVPKKKDVSPRKDEKIIPLKTDIPLPSK 8553 Query: 607 PKSESL---EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 +D+ E+ +K ++ AT ++ + + Sbjct: 8554 KDEPIEYIKKDVVLPAKQEDKIVPQKKEVTPLSKKDEATAPKKTEMLPPAKQDEEIFPQK 8613 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ + + + + + IP + + + KK + RRK Sbjct: 8614 KEVALPSKKDEAVESKKKDVYFSAKQDEEIIPKKTEVLLPPKKEEAIEHKKKDVSYPRRK 8673 >gi|195587988|ref|XP_002083743.1| GD13891 [Drosophila simulans] gi|194195752|gb|EDX09328.1| GD13891 [Drosophila simulans] Length = 1889 Score = 46.1 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 41/160 (25%), Gaps = 12/160 (7%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624 EK L N + +D + D ++ Sbjct: 368 EKDEIGGELKNAASGKSQERDQSRGKTKERSRERDRTRNKTREKSQARDQTKRKATDAEH 427 Query: 625 --TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 ++ R +RR + + + + + ++S + N + E Sbjct: 428 TRVKSRKRSSSRDKRREKSKEKNGEKLKEKSTERSERRNES--------KVKNKDTNEEK 479 Query: 683 AHGFTENYDVSIPPVS-TPEMESSNSSSDPIVKKTRWWKR 721 ++ D + ++ + P KK R + Sbjct: 480 LRERSKEKDRNHSKERLHERKQNKSEERKPEAKKVRNARE 519 >gi|221487475|gb|EEE25707.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 1280 Score = 46.1 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 8/146 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G +D + S + V +DE P + E + ++ + TG Sbjct: 554 RGKSSARSEVED---SADERQASKKRGRGPVDEDEESSPGDEGEDAKRVRPVGRGRKQTG 610 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + RR R + + +D + P N Sbjct: 611 ASPRNTNKARRTRE-----KGAARRGTGATEPRRNDEAGEFNGPDAEANQAPFGFTKREE 665 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712 + P + E NS + Sbjct: 666 AQQGLQDSPGLPPRNAEPGNSRRERA 691 >gi|297588139|ref|ZP_06946783.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297574828|gb|EFH93548.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 2303 Score = 46.1 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 46/227 (20%), Gaps = 20/227 (8%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL----- 562 + + + VV Y E E + I + L Sbjct: 1969 NKETGKLEVTEERTEPTNKVVEYGSKTDGEFKYESEKAYD--IIIRENPNLEAGKTNVIQ 2026 Query: 563 ----------FYIEKGSPVQALVN--TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 IE V T + I V D+ + P + Sbjct: 2027 EGKPGKTETTVKIENSKEVSRDTKTITEKQDKIIEIGTKNVCEIPPVNPDKPVDPDKPVD 2086 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYME 669 + ++ + + D + I Sbjct: 2087 KDPENPTKPGEKDPENPDKPGDKDPENPDKPGDKDPENPDKPGDKDPETPIKPGDKDPEN 2146 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 P + + G + + P PE + +P +T Sbjct: 2147 PDKPGDKDPENPDKPGDKDPENPDKPGDKDPETQIKPGDKEPENPET 2193 >gi|309359073|emb|CAR99887.1| hypothetical protein CBG_27608 [Caenorhabditis briggsae AF16] Length = 1081 Score = 46.1 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 47/157 (29%), Gaps = 6/157 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G P V + + + S + + + ++ + + + SEE T Sbjct: 18 GRPRTRAVKDKAREVGATTSTSSTSTTKPSQKRRLAMKKAETAEKKLQRKDEESEEITAK 77 Query: 628 IRK---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 R+ R+R+ R + H S+ + + +N Sbjct: 78 RRRLDAIRKRKARVEETEEEHKKRTSSNKERTSRARSEETEDQYRRRKSSNRVSTSRARS 137 Query: 685 GFTENYDVSI---PPVSTPEMESSNSSSDPIVKKTRW 718 TE + T + S + +D + ++ + Sbjct: 138 EETEGERIRRMLANAERTFKARSEGTETDTLKRRAQN 174 >gi|24658459|ref|NP_647974.1| CG5146 [Drosophila melanogaster] gi|23094104|gb|AAF50767.2| CG5146 [Drosophila melanogaster] Length = 1929 Score = 46.1 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 58/226 (25%), Gaps = 15/226 (6%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA---DK 561 R+ + + + + + + + R + L Sbjct: 312 RTQNRGRTRERSKESHGKSTENSKNKDEGRGKGRERDLFRRKSRERS--QDKNLNRAKSM 369 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 EK NT + +D + D + + Sbjct: 370 NLSKEKDEVGGEPRNTASGKSQERDQSRGKTKDRSRERDRTRNKTREKSQARDQTRSKAN 429 Query: 622 EESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME------PSD 672 + + R+R R +RR + + ++ S + + S + + + Sbjct: 430 DAEHTRAKSRKRSSSRDKRREKSKEKLGDKEKNEDLSKEKLEGKSTEHSEKRNESKVKNK 489 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 TN +++ + S + ++ + P KK R Sbjct: 490 DTNEENANKKLRERSKDRNHSKERLHE-RTQNKSEERKPEAKKVRN 534 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 39/164 (23%), Gaps = 5/164 (3%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 IE + + + G S ++ + KS +D + Sbjct: 286 IENNRSRELPQHKNYVRGKTSNRSHDRTQNRGRTRERSKESHGKSTENSKNKDEGRGKGR 345 Query: 625 TGVIRKRRRRRRRRRPATDHHDAG--VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + +R+ R R + + + + + E + Sbjct: 346 ERDLFRRKSRERSQDKNLNRAKSMNLSKEKDEVGGEPRNTASGKSQERDQSRGKTKDRSR 405 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSS---SDPIVKKTRWWKRRK 723 T N +N + K++ +R+ Sbjct: 406 ERDRTRNKTREKSQARDQTRSKANDAEHTRAKSRKRSSSRDKRR 449 >gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25] gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25] Length = 522 Score = 46.1 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 9/170 (5%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P ++ Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411 Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 +E+ G + +RR + +T+ AG S Q + D + Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKSNSEGQGRTNSKPDDRKPNGNK 471 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N N +++ + P + N++ K + ++ + Sbjct: 472 PNGNKPNGNKPNGSKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 517 >gi|115443216|ref|XP_001218415.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624] gi|114188284|gb|EAU29984.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624] Length = 734 Score = 46.1 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 39/161 (24%), Gaps = 10/161 (6%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--- 620 +K P A + + + + DE + P ++ + D Sbjct: 574 KFKKIGPTPAGKPAVDGAAATASSTNKPAETAGTTDDEVVDKTPITDEDGTVMDAEGGAF 633 Query: 621 ---SEESTGVI----RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 E+ + R RR+ P G +D+ + + Sbjct: 634 GPFEEDEDAERIARAERNRLRRKGLNPKAVLSKPGKSPKKDKPAEQSNDAPKANKKEKNE 693 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + A E S + +S + K Sbjct: 694 AKEGTEKPSAGKPAEKAQSSPAEKKKNKKQSQSPKGKKSSK 734 >gi|328711239|ref|XP_001943019.2| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Acyrthosiphon pisum] Length = 988 Score = 46.1 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 4/193 (2%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 N+KR + + + N K + + + ++ ++ Sbjct: 781 RNKKRKDLDKSKQNAERKENEKPKKNEKRNEIDKPKRYEERKGNDMPRQKEDRNENDNWR 840 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 +N + D++ +++ ++ + + +RR RR + + Sbjct: 841 RNEDKRDNDKSRKYEERNDKTRRYEERKENNDKPKRYEERRDNDMARRNEDRNLNDRSRR 900 Query: 652 DVSSIQNVIDDSFDMYMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + +N I + E N EN E E S + Sbjct: 901 NEDRNENDISRKNEERKENYRPRKNEERKENDRPRRNEE---RKENDRHSRNEIDKSKRN 957 Query: 711 PIVKKTRWWKRRK 723 K R +RR+ Sbjct: 958 EYEKSRRNVERRE 970 >gi|34536310|dbj|BAC87606.1| unnamed protein product [Homo sapiens] Length = 834 Score = 46.1 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 664 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 723 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 724 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 783 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 784 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 823 Score = 44.2 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 688 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 747 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 748 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 807 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 808 EPSRKPKRRRAADVEPSLPEPKR 830 Score = 41.9 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 663 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 719 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 720 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 773 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 774 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 830 >gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis KT71] gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis KT71] Length = 704 Score = 46.1 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 11/104 (10%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88 E + G IY KV R+ AFV+ + G L QI + Sbjct: 611 IEEITAEAEVGAIYTGKVERIVDFG---AFVNILPGKDGLLHIS-------QIANERVEN 660 Query: 89 LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQE 132 + + V D G + + LE+ AP + E Sbjct: 661 VSDHLKEGEEVRVKVLDVDQRGRIKLSIKELLEDEAPAESAGDE 704 >gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O] gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O] Length = 509 Score = 46.1 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 14/180 (7%) Query: 545 RFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 G +I++V L F IE+ + P + + + Sbjct: 339 ETGKAISLVC--ALEAPELFAIERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPK 396 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 P + + ++ + + + + S+ + +DS Sbjct: 397 KPKKPK-----APNAEAAGSDASSKGNQKAKTADKPQGQNRGNGKAKRQFSAPKEGNNDS 451 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P N + P + P + +S K + ++ + Sbjct: 452 ANKGKRP------NTKGSKPANNANGKTNGKPSHAKPNSAKTGNSKPANGKPSAQRRKPR 505 >gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3047] gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3047] Length = 709 Score = 46.1 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 20/111 (18%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDYGGNRHGFLPFLEIH---- 75 R+EE+ E E G IY KVTR+ A AFV GN+ G + +I Sbjct: 609 GRIEEIVAEVE-----AGAIYKGKVTRL-----ADFGAFVAIVGNKEGLIHISQIAEERV 658 Query: 76 ---PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 DY Q+ +++ + D E+ Sbjct: 659 EKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEINQEDPVEEQE 709 >gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3031] gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3031] Length = 709 Score = 46.1 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 20/111 (18%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDYGGNRHGFLPFLEIH---- 75 R+EE+ E E G IY KVTR+ A AFV GN+ G + +I Sbjct: 609 GRIEEIVAEVE-----AGAIYKGKVTRL-----ADFGAFVAIVGNKEGLIHISQIAEERV 658 Query: 76 ---PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 DY Q+ +++ + D E+ Sbjct: 659 EKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEINQEDPVEEQE 709 >gi|153217494|gb|AAI51244.1| Synemin, intermediate filament protein [Homo sapiens] gi|168267314|dbj|BAG09713.1| desmuslin [synthetic construct] Length = 1565 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 14/171 (8%), Positives = 45/171 (26%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + + E+ Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYISEDSTIARES 471 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + +E + + +K + R + + + + D Sbjct: 472 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIR-----TKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577 >gi|154419325|ref|XP_001582679.1| hypothetical protein [Trichomonas vaginalis G3] gi|121916916|gb|EAY21693.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3] Length = 1082 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 2/155 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + AP K I +DE + P ++ + + Sbjct: 845 NEIDDDSESEEKIKKAIKPAPKIKKIIITDSEDEPPMKKPSKRPKKEQEPVKKKKLQEEE 904 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 I ++++R +D D ++ DS + + P N + Sbjct: 905 ILPKKKKRIIND--SDSDDEVILPKKKKQVIKDLDSDEEDILPKKKRIINDSDEEVILPK 962 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + S E E S KK R+ Sbjct: 963 KKKRILLESDSNDEEEIPRKSKKSTPKKVSNSNRK 997 >gi|27529710|dbj|BAA20810.2| KIAA0353 [Homo sapiens] Length = 1614 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 14/171 (8%), Positives = 45/171 (26%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + + E+ Sbjct: 461 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYISEDSTIARES 520 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + +E + + +K + R + + + + D Sbjct: 521 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIR-----TKPEEKMFD 575 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 576 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 626 >gi|257066610|ref|YP_003152866.1| G5 domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798490|gb|ACV29145.1| G5 domain protein [Anaerococcus prevotii DSM 20548] Length = 1859 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 46/209 (22%), Gaps = 4/209 (1%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIE 566 + + V + VV Y E E + I + L I+ Sbjct: 1519 NKETGKLEVTEERVEPKNKVVEYGSKTDGEFTYESEKAYD--IIIRENPNLEAGKTNVIQ 1576 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G P + + + + + E D + E+ Sbjct: 1577 EGKPGKTETTVKIENSKEVDRTTKTITEKQDKIIEIGTKNVCEIPPVDSDPSKPGEKEDP 1636 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + D G D S D S E + G Sbjct: 1637 SKPGEKEDPSKPGEKEDPSKPGEKEDPSKPGEKEDPSKPGEKE-DPSKPGEKEDPSKPGE 1695 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E+ + S P K+ Sbjct: 1696 KEDPSKPGEKEDPSKPGEKEDPSKPGEKE 1724 >gi|115400339|ref|XP_001215758.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114191424|gb|EAU33124.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 617 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 30/154 (19%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + K + + +D A + + + Sbjct: 226 QDDSKRAKDTKSRPADSLSNPKRRSTMNSRDAAYDEEEQLRRAIEESKEDTKSIGDDIAM 285 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 +R +R R A + S + S S+ Sbjct: 286 RRGKRSRSDSEANKQATKRQRTSSPSPGAISKQSNPPSQPASEDEEKTKAPTNGARRQRA 345 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S E E +K +RK Sbjct: 346 ASRSQRDKDAKEPEEPEGEQSEANRKKGKNDKRK 379 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 6/166 (3%) Query: 564 YIEKGSPVQALVNT----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 IE+ + S S + + + + +S Q Sbjct: 268 AIEESKEDTKSIGDDIAMRRGKRSRSDSEANKQATKRQRTSSPSPGAISKQSNPPSQPAS 327 Query: 620 VSEESTGVIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 EE T RR+R R + + + + D + + Sbjct: 328 EDEEKTKAPTNGARRQRAASRSQRDKDAKEPEEPEGEQSEANRKKGKNDKRKGDDPESGH 387 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E+ T + S P TP S P +K+ R+ Sbjct: 388 EAESPVKPATTEPEPSQPSPDTPAPAQEAPPSRPSTRKSGRPPARR 433 >gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6] gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6] Length = 509 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 14/180 (7%) Query: 545 RFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 G +I++V L F IE+ + P + + + Sbjct: 339 ETGKAISLVC--ALEAPELFAIERLIQELLPRKALEGYAPTNAVPESKLDTRPIKPKKPK 396 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 P + + ++ + + + + S+ + +DS Sbjct: 397 KPKKPK-----APNAEAAGSDASSKGNQKAKAADKPQGQNRGNGKAKRQFSAPKEGNNDS 451 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P N + P + P + +S K + ++ + Sbjct: 452 TNKGKRP------NTKGSKPANNANGKTNGKPSHAKPNSAKTGNSKPANGKPSAQRRKPR 505 >gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B] gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis SB2B] Length = 533 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 49/203 (24%), Gaps = 28/203 (13%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY----IEKGSPVQALVNTGHKV 581 + + N++ + + E L K F + P + + Sbjct: 342 EAASLVCNEEAKQLRDIERLIK--------QSLPRKEFVGFEPVHGLPPSENQGKSKPGG 393 Query: 582 GSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 P + Q P + S + + + + + RR RR + Sbjct: 394 SKQGAKPGNKSQGRKPQGQSRNAQPKQRQGSRAQEERSQQDKNPSRSEQPRRERRGNDQA 453 Query: 641 ATDH-HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 ++ H A D + N ++ N + P Sbjct: 454 RSERPHSARAHGDKARSDNARSENGRSDARTDSARNDKPRSD------------RPNTDR 501 Query: 700 PEMESSNSSSDPIVKKTRWWKRR 722 S + P + + R Sbjct: 502 AASNKPRSGNRPQGQ--GQQRPR 522 >gi|302509298|ref|XP_003016609.1| hypothetical protein ARB_04898 [Arthroderma benhamiae CBS 112371] gi|291180179|gb|EFE35964.1| hypothetical protein ARB_04898 [Arthroderma benhamiae CBS 112371] Length = 909 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 4/153 (2%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F + G + + K + PI + +I Sbjct: 26 FSSKSGGSNNYETKEKDDEVVEGAPQTPQKQVGRAESKRTPPPIDDGDVDGEILSGGEKS 85 Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ES + +R++R+ + +D S N S Sbjct: 86 ESVSPVTRRQKRKEAIATKGDEESDEQPVTKRRRRSPKSNTKAKSPVNGGRSKAAATGEQ 145 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 E S S E+E + P Sbjct: 146 SPTKIKSDAEPEQSSAEENSASEIEEDDIDDKP 178 >gi|255325434|ref|ZP_05366538.1| putative acyltransferase domain protein [Corynebacterium tuberculostearicum SK141] gi|255297520|gb|EET76833.1| putative acyltransferase domain protein [Corynebacterium tuberculostearicum SK141] Length = 1250 Score = 46.1 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 14/158 (8%), Positives = 47/158 (29%), Gaps = 7/158 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K P + +TG + +P + + + + + + S++ Sbjct: 286 QKSQPANSKPDTGQQQAQKPDSPKRVPANSAKKKPQP--QPTPKKDAQPSKPSQPSKDQD 343 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +++ A+ ++ + + + + + + + Sbjct: 344 SARTPETAKQKAGPQASTPSSPKPKKGTTAPKPKV-----TAPKTAADASQQKARSTQNK 398 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ + +PP S S + KK + + K Sbjct: 399 TAQDGNKVVPPKSKQGTSSKDEKPKQEAKKQQPQPKAK 436 >gi|308461244|ref|XP_003092916.1| hypothetical protein CRE_16373 [Caenorhabditis remanei] gi|308252043|gb|EFO95995.1| hypothetical protein CRE_16373 [Caenorhabditis remanei] Length = 660 Score = 45.7 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 40/166 (24%), Gaps = 5/166 (3%) Query: 555 GIELADKLFY-IEKGSP-VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 F + G N + V S S P + L + S Sbjct: 425 DEMADQPDFQGVNPGRQRSPQPQNRQNPVPSRSPTPLNRRRPATSRSPPPLNRRRPATSR 484 Query: 613 EDIQDNIVSEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + + + RRR R P S N + P Sbjct: 485 SPQPQDRQNPVPSHSPTPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRPATSRSPPP 544 Query: 671 SDITNHNLLENGAHGFTENYDVSI-PPVSTPEMESSNSSSDPIVKK 715 + + +N S PP +++ S P+ ++ Sbjct: 545 LNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRPATSRSPPPLNRR 590 Score = 43.8 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 35/155 (22%), Gaps = 7/155 (4%) Query: 565 IEKGSPVQALVNTGH----KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + + P + V S S P + + + S N Sbjct: 475 LNRRRPATSRSPQPQDRQNPVPSHSPTPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRR 534 Query: 621 SEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ++ RRR R P S N + P + Sbjct: 535 RPATSRSPPPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRPATSRSPPPLNRRRPAT 594 Query: 679 LENGAHGFTENYDVSI-PPVSTPEMESSNSSSDPI 712 + +N S PP + + S P Sbjct: 595 SRSPQPQDRQNPAPSRSPPPLNRRRAAPSRSPSPQ 629 Score = 40.7 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 6/117 (5%) Query: 566 EKGSPVQALVNTG----HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 ++ +P + S S P + + + S N Sbjct: 518 DRQNPAPSRSPPPLNRRRPATSRSPPPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRR 577 Query: 622 EESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 ++ RRR R P S N + P + + Sbjct: 578 PATSRSPPPLNRRRPATSRSPQPQDRQNPAPSRSPPPLNRRRAAPSRSPSPQHLRRN 634 >gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] Length = 714 Score = 45.7 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 20/111 (18%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQA---AFVDYGGNRHGFLPFLEIH---- 75 R+EE+ E E G IY KVTR+ A AFV GN+ G + +I Sbjct: 614 GRIEEIVAEVE-----AGAIYKGKVTRL-----ADFGAFVAIVGNKEGLIHISQIAEERV 663 Query: 76 ---PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEV 123 DY Q+ +++ + D E+ Sbjct: 664 EKVSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEINQEDPVEEQE 714 >gi|301613955|ref|XP_002936474.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Xenopus (Silurana) tropicalis] Length = 995 Score = 45.7 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 33/146 (22%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 A + +K + IP +S E + ++ S + R Sbjct: 175 TASKRRSTSKTEEKAKHKSEKKKNKTISEAVKEKIPSGKSKERRKSKSPAKRSKSEDQPR 234 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R RR+ + + S S + Sbjct: 235 RSPALRRQSPEKNIKTKSPQEERMKSRDRKKSPVASESKSRERTKKSKSPVSRRSKSKER 294 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 S P S+ P+ ++ Sbjct: 295 RSKSKEKKPRRSDSDRDRKPLKSPSK 320 Score = 38.4 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 35/144 (24%), Gaps = 1/144 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + SP + + + + + KS + +S Sbjct: 241 RQSPEKNIKTKSPQEERMKSRDRKKSPVASESKSRERTKKSKSPVSRRSKSKERRSKSKE 300 Query: 627 VIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +R R R+P + DA + S S + + + + Sbjct: 301 KKPRRSDSDRDRKPLKSPSKDASSGKENRSPGRRPARSPKARSLSPKQRDRAMRHSRSPP 360 Query: 686 FTENYDVSIPPVSTPEMESSNSSS 709 + PP + S S Sbjct: 361 VHDRKSKQSPPRIQSPTRRAKSKS 384 >gi|317124438|ref|YP_004098550.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043] gi|315588526|gb|ADU47823.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM 43043] Length = 807 Score = 45.7 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 35/154 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P + + D + P ++ + ++ + Sbjct: 94 RPFERRDDRRPFERRDDRRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPF 153 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R R RRP D ++ S+ ++ Sbjct: 154 ERRDDRTSERRPFERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERRDDRRPFERR 213 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + S + ++ + R +RR Sbjct: 214 DDRTSERRPFERRDDRTSERRPFERRDDRTSERR 247 Score = 44.2 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 27/260 (10%), Positives = 59/260 (22%), Gaps = 11/260 (4%) Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYI--RSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 M+ R + +T + G + R + + R E T+ Sbjct: 40 MTDPRSAARTSRPSTTSTAHVGGRDWRGPRDERRDDRTSERRPSERRDDRTSERRPFERR 99 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 D + ++R +E R + + + P + + + Sbjct: 100 DDRRPF---ERRDDRRPFERRDDRTSERRP---FERRDDRTSERRPFERRDDRTSERRPF 153 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 + + + + D + + R+ RR RRP Sbjct: 154 ERRDDRTSERRPFERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERRDDRRPFERR 213 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 D ++ + D T+ T E Sbjct: 214 DDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRRPFER 273 Query: 705 SNSSSDPIVKKTR---WWKR 721 + + W +R Sbjct: 274 RDDRGPSDRRNDGRDAWRQR 293 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 32/156 (20%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G + + + + + + P + + + Sbjct: 66 RGPRDERRDDRTSERRPSERRDDRTSERRPFERRDDRRPFERRDDRRPFERRDDRTSERR 125 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R R RRP D ++ + D T+ Sbjct: 126 PFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDR 185 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + + R +RR Sbjct: 186 RPFERRDDRTSERRPFERRDDRRPFERRDDRTSERR 221 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 11/154 (7%), Positives = 28/154 (18%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + P ++ + ++ + Sbjct: 107 RRDDRRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPFERRDDRTSERRPF 166 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R R RRP D + + Sbjct: 167 ERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERRDDRRPFERRDDRTSERRPFERR 226 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + S + ++ + R +RR Sbjct: 227 DDRTSERRPFERRDDRTSERRPFERRDDRTSERR 260 >gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis URRWXCal2] gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis URRWXCal2] Length = 747 Score = 45.7 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 12/158 (7%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ GF Sbjct: 600 ASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGNKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQA--LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPI 126 + EI + + S + ++K I + + + D +++ + Sbjct: 650 VHISEISEERIETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNPKPKNNVN 709 Query: 127 ANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 E S + + K + + Sbjct: 710 NAKENSEPERRDSSKKRAWNEDSNNDKEEAITERKYFN 747 >gi|47093078|ref|ZP_00230855.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 4b H7858] gi|47018518|gb|EAL09274.1| ribonuclease, Rne/Rng family [Listeria monocytogenes str. 4b H7858] Length = 49 Score = 45.7 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 1 MANKMLIDASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRV 50 M L+ ++ E R+ + D+ + +++ +K G+IY + ++ Sbjct: 1 MKK--LVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGFIQKI 48 >gi|255564343|ref|XP_002523168.1| ATP binding protein, putative [Ricinus communis] gi|223537575|gb|EEF39199.1| ATP binding protein, putative [Ricinus communis] Length = 1548 Score = 45.7 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 15/266 (5%) Query: 465 LEMSRQRIRSSVLESTTKVC-TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT 523 LE R+ +R +V +V + ++ E + A Sbjct: 28 LEGGRKHLRQAVQILNEQVDKIQAENLALKKAYEEEKARAGTEKVEREQELAARVAFEKE 87 Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 S + L + K+ I + E + G + ++ ++ I + + Sbjct: 88 ISALKSELCSLKQKGIADVEDKTG-ELKILQD-HVSKADKEIARLKALLEKEKKRADSEK 145 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 + + E SE+L+ + + + E + + R+R + Sbjct: 146 KNAEAQKKSASXXRNEVEEAKSKLVSETLKYEEASKMLEAEKNKVTEERKRADSEMDKAE 205 Query: 644 HHDAGVVSDVSS-----------IQNVIDDSFDMYMEPSDITN-HNLLENGAHGFTENYD 691 ++ Q + D ++ +I N + G + Sbjct: 206 QQRKLAEANEKKFMDEKSLANSLSQQLEDARQEVEELQKEINNLTSSKNLGDASRNQYDQ 265 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 ++IPPV++ SS I KTR Sbjct: 266 INIPPVNSEMSSLQQKSSSDIEDKTR 291 >gi|194381794|dbj|BAG64266.1| unnamed protein product [Homo sapiens] Length = 849 Score = 45.7 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 679 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 738 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 739 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 798 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 799 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 838 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 703 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 762 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 763 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 822 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 823 EPSRKPKRRRAADVEPSLPEPKR 845 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 678 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 734 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 735 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 788 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 789 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 845 >gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 693 Score = 45.7 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 G IY K+ ++ S AFV+ G++ G+LPF EI Sbjct: 625 GQIYKGKIVKLLDS--GAFVNLLGSQDGYLPFSEI 657 >gi|40788916|dbj|BAA13210.2| KIAA0220 [Homo sapiens] Length = 884 Score = 45.7 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 714 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 773 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 774 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 833 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 834 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 873 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 738 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 797 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 798 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 857 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 858 EPSRKPKRRRAADVEPSLPEPKR 880 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 713 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 769 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 770 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 823 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 824 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 880 >gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617] Length = 710 Score = 45.7 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 23/108 (21%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVA 104 + G + +I DY Q+ +L+ + Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 691 >gi|302656594|ref|XP_003020049.1| hypothetical protein TRV_05913 [Trichophyton verrucosum HKI 0517] gi|291183829|gb|EFE39425.1| hypothetical protein TRV_05913 [Trichophyton verrucosum HKI 0517] Length = 908 Score = 45.7 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 4/153 (2%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F + S ++ + K + PI + +I Sbjct: 33 FSSKSSSSKNDETKEKDDEVAEGAPQTPQKQVGRAESKRTPPPIDDGDVDGEILSGGEKS 92 Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ES + +R++R+ + +D S N S Sbjct: 93 ESVSPVTRRQKRKEAVAIKGDEESDEQPVTKRRRRSPKSNTKAKSPVNGGRSKAAATGEQ 152 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 E S S E+E + P Sbjct: 153 SPTKIKSDAEPEQSSAEENSASEIEEDDIDDKP 185 >gi|58865984|ref|NP_001012204.1| TRAF3-interacting protein 1 [Rattus norvegicus] gi|81883809|sp|Q5XIN3|MIPT3_RAT RecName: Full=TRAF3-interacting protein 1 gi|53734525|gb|AAH83645.1| TNF receptor-associated factor 3 interacting protein 1 [Rattus norvegicus] Length = 653 Score = 45.7 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 14/160 (8%), Positives = 42/160 (26%), Gaps = 3/160 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++ + ++ + + S+ E +D ++E Sbjct: 145 KAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKE 204 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R R R + A D D + + ++ + Sbjct: 205 ADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQ 264 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + ++ + DP +K+R + + Sbjct: 265 KDRDRDKGKDRER---RKSKNGEHTRDPDREKSRDADKSE 301 >gi|261327858|emb|CBH10836.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1502 Score = 45.7 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 17/225 (7%), Positives = 55/225 (24%), Gaps = 10/225 (4%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 + EE + A + + + E EA + Sbjct: 509 KKAEEEAARKKAEKMRKRAQARKARMKAEEAARKRAEEEAARKKA---EEEAARKRAEEE 565 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + + + + + ++ A + + + ++ +++ Sbjct: 566 AARKRAEEEAARKKAEEEAARKRAEEEAARKRAEEEAARKRAEEEAARKKAEEEAARKKA 625 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++R R + A ++ + + ++ + E A Sbjct: 626 EEEAARKRAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAAR 685 Query: 685 GFTENYDVSIP-------PVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + E + + KK ++R Sbjct: 686 KKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEKMRKR 730 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 9/155 (5%), Positives = 45/155 (29%), Gaps = 2/155 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + + + ++ A + + + ++ +++ Sbjct: 454 RKRAEEEASTKRAEEEAARKKAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEE 513 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++ + R+R A + ++ ++ + +++ E E Sbjct: 514 EAARKKAEKMRKRA--QARKARMKAEEAARKRAEEEAARKKAEEEAARKRAEEEAARKRA 571 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E + ++ ++ KR Sbjct: 572 EEEAARKKAEEEAARKRAEEEAARKRAEEEAARKR 606 >gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 693 Score = 45.7 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 G IY K+ ++ S AFV+ G++ G+LPF EI Sbjct: 625 GQIYKGKIVKLLDS--GAFVNLLGSQDGYLPFSEI 657 >gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01] gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01] Length = 517 Score = 45.7 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 41/165 (24%), Gaps = 4/165 (2%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P ++ Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +E+ G + +RR + + N N N Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRANSKPDDRKPNGNK 471 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ + P + N++ K + ++ + Sbjct: 472 PNGNKPNGNKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 512 >gi|239745501|ref|XP_002343471.1| PREDICTED: nuclear pore complex-interacting protein-like 3-like isoform 1 [Homo sapiens] Length = 1122 Score = 45.7 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 32/153 (20%), Gaps = 18/153 (11%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP+ + + P+P S Sbjct: 980 ADDNLKTP--------------SERQLTPLPPSAPTSADDNIKTPAERLRGPLPPSADDN 1025 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + ++E+ ++ +R+R P G V + + Sbjct: 1026 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 1085 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 +E P P+ Sbjct: 1086 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKR 1118 >gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii str. Rustic] gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii str. Rustic] Length = 748 Score = 45.7 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 31/175 (17%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ GF Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + E+ + E V+ + GD+ + Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + +++ + PE K++ ++ ++ + Sbjct: 689 TIKNADKDKSSNNTKPKTHVNNTKDNSEPEQRRDSSKKRAWNEDNNAEIAEVITE 743 >gi|86148617|ref|ZP_01066900.1| translation initiation factor IF-2 [Vibrio sp. MED222] gi|218710445|ref|YP_002418066.1| translation initiation factor IF-2 [Vibrio splendidus LGP32] gi|254803479|sp|B7VJH7|IF2_VIBSL RecName: Full=Translation initiation factor IF-2 gi|85833608|gb|EAQ51783.1| translation initiation factor IF-2 [Vibrio sp. MED222] gi|218323464|emb|CAV19641.1| translation initiation factor 2 [Vibrio splendidus LGP32] Length = 896 Score = 45.7 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 11/158 (6%), Positives = 35/158 (22%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + ++ QA + + ++ + + E Sbjct: 110 EAEEVANREAEEKAQRDAEEQAKRDAAEKAQREAEAKVTREADAKREAEEKAQRAQAEKA 169 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + + + + + + ++ + E + N Sbjct: 170 KKDMNSKNADANAQAKKEADELKARQEQEATRKAEAEAAKLVEEARKLAEENQERWSEEE 229 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + D KK RR+ Sbjct: 230 KKKKEQEKSADYHVTTSTYAREAEDAADKKDEKAPRRR 267 >gi|317419318|emb|CBN81355.1| Proline-rich protein 12 [Dicentrarchus labrax] Length = 2082 Score = 45.7 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 42/147 (28%), Gaps = 5/147 (3%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + P+ V ++E + P + E E + + + ++ Sbjct: 1727 TPALRRQSLPKMASPPATQAPPRVVEKEERVAPPVQREQREKTRTATATTKEQREKKETP 1786 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + + D+ + + D + ++ + E Sbjct: 1787 DAVLKAKEKEKERDSEKEREKEKRVQLQQDKVEKRAAAAERGRAKEEKKALE-RKEKEKA 1845 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWW 719 PP S P + ++P KK + W Sbjct: 1846 ERPPKSKP----AKVKAEPPPKKRKKW 1868 >gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. Iowa] gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii str. Iowa] Length = 748 Score = 45.7 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ GF Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + E+ + E V+ + GD+ + Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + +++ + S PE K++ ++ ++ + Sbjct: 689 TIKNADKDKFSNNTKPKTSVNNTKDNSEPEQRHDSSKKRAWNEDNNAEIAEVITE 743 >gi|198421981|ref|XP_002130898.1| PREDICTED: similar to mitogen-activated protein kinase kinase kinase kinase 4 [Ciona intestinalis] Length = 1022 Score = 45.7 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 6/140 (4%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + + + + DE K E D + ++ R R +RR Sbjct: 352 QQENKERSELQKRERQQKELNDERRKNEKKKEDRRKSDDQRENLRREQAKKEERAREQRR 411 Query: 639 RPATDHHDAGVVSD--VSSIQNVIDDSFDMYMEPSDITNHNLLENG----AHGFTENYDV 692 + + + IQ + + + ++ EN +H + + V Sbjct: 412 KLDAERKRKEEEARLMQERIQQQRREQEEAHQRATEEALRRKKENEAPPISHQRSHSQHV 471 Query: 693 SIPPVSTPEMESSNSSSDPI 712 P ++E + + P Sbjct: 472 REKPQWARQIEERSKQNRPE 491 >gi|298484343|ref|ZP_07002504.1| transcription termination factor Rho [Bacteroides sp. D22] gi|298269497|gb|EFI11097.1| transcription termination factor Rho [Bacteroides sp. D22] Length = 752 Score = 45.7 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 14/163 (8%), Positives = 37/163 (22%), Gaps = 1/163 (0%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 ++ ++ S + K V + + ++ Sbjct: 63 NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122 Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E+ KR+ R R+ A + + V+ + + Sbjct: 123 AKAENATTAPKRKVGRPRKSADAEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPA 182 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + A ++ + E + I K + Sbjct: 183 QQPTAEKKAKSKPAAETNKPAAEPNKPAAEKKVIDKPQKKAAP 225 >gi|298528716|ref|ZP_07016120.1| translation initiation factor IF-2 [Desulfonatronospira thiodismutans ASO3-1] gi|298512368|gb|EFI36270.1| translation initiation factor IF-2 [Desulfonatronospira thiodismutans ASO3-1] Length = 889 Score = 45.7 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 32/106 (30%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 PV A H + ++ P+ + + Q+ P + ++ ++ Sbjct: 105 KPVDAKAPEEHLQETPAREPAAEDGDQAQKQEVTQEPDAADQHKQEAAPEEARDKEARRD 164 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 R R+ R+++ + V+S +P Sbjct: 165 RPPRKGARKKKAPPEEPKVKVISRPEPEAEPRTTVTPEPAKPEVTE 210 >gi|194756214|ref|XP_001960374.1| GF13333 [Drosophila ananassae] gi|190621672|gb|EDV37196.1| GF13333 [Drosophila ananassae] Length = 4865 Score = 45.7 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 64/638 (10%), Positives = 166/638 (26%), Gaps = 32/638 (5%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 S+ A + + + + + + ES N Sbjct: 2857 VSEVLAEKISEEKVEESKKPDVKESEAKPDQAKTLEKQSLEEQKLDAKTQKQAESASEKN 2916 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 ++ E + E+ ++ K+ + K Q ++ E A Sbjct: 2917 LEMAEVSEVLAEKISEEKVEESKKLDVKESEAKPDQAKTLEKQSLEEQKLDAKTQKQAES 2976 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 A + M S+ + K L + + + + +I+ Sbjct: 2977 ASEKNSEMAEVSEVLAEKISEEKVEESKKLDVKESEAKPDQAKALEKESLEEQQLDAKIQ 3036 Query: 263 RDFEYL-MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + E + + + + E + D ++ + ++ Sbjct: 3037 KQAESAPEKKSETAEVSEVVAEKMSEEKVEESKKLDVKESEAKPDQAKALEKESLEEQQL 3096 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 ++ S + + + + E +++ + EV E Sbjct: 3097 DAKIQKQAESASEKNSEMAEVSEVVAEKMSEEKVEESKKPEVKESEAKPDQAKALEKQSL 3156 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 + T++ + ++ E ++ + I E+ + ++ E Sbjct: 3157 EEQQLDAKTQKQAESASEKKSETAEVSE-------------VLAEKISEEKVEESKKPEV 3203 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 K E+ K D+A+ + ++ + L++ T+ + + Sbjct: 3204 KESEA-KPDQAK------------ALEKKSLEEQQLDAKTQKQAKSASEKKPETAEVSEV 3250 Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + EE + + + L ++ + A+ + Sbjct: 3251 LAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEDQKLYAKTQKQAESTAEKKSETA 3310 Query: 562 LFY---IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 EK S + + +V P K +E +E L + + + Sbjct: 3311 EVSEVLAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAKSASEK 3370 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + + R + + + + S + + D Sbjct: 3371 KPETAEVSEVLAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEE--QKLDAKTQKQ 3428 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E+ A +E +VS E S P VK++ Sbjct: 3429 AESTAEKKSETAEVSEVLAEKISEEKVEESKKPEVKES 3466 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 2/221 (0%) Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 +A I E + + L + + + S Sbjct: 3443 SEVLAEKISEEKVEESKKPEVKESEAKPDTAKALEKQSLDEQQLDAKTQKQAESAAEKNS 3502 Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + EK S + + V P K +E +E L + E Sbjct: 3503 EMAEVSEVFAEKISEEKVEESKKPDVKESEAKPDQAKTLEKQSLEEQQLDAKTQKQAESA 3562 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + + + + + + + + S + D Sbjct: 3563 SEKKSETAEVSEVLAEKISEEKVEESKKPEVKESEAKPDQAKALEKQSLEEQQ--LDAKT 3620 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E+ + +E +VS E S P VK++ Sbjct: 3621 QKQAESASEKKSETAEVSEVLAEKISEEKVEESKKPEVKES 3661 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 53/228 (23%), Gaps = 8/228 (3%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 +S+ + +L A V ++ E + I+ Sbjct: 4027 KSEKAEVSEVLAEKISEKKLEEAKQPEVKESEAKPDQAKALEK---RALEEQKRKKISEK 4083 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP-----K 608 E + QA + +K ++ ++ + Sbjct: 4084 KAEEAKQPEVKESETKSDQAKAFEKQALEEQKLEEKTEKQVKTKSYKQSEKAEVSGVLAE 4143 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 S + ++ E + + + + + + V + + S + Sbjct: 4144 KISEKKAEEAKQPEVKESETKPDQAKALEEQKLEEKTEKQVKTKSDKKSEKAEVSEVLAE 4203 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + S+ + D + E +N +K Sbjct: 4204 KISEKKPEEAKQPEVKESETKPDQAKALEEQKLEEKANKQVKTKSEKK 4251 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 68/647 (10%), Positives = 193/647 (29%), Gaps = 38/647 (5%) Query: 72 LEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQ 131 E PD Q ++Q+L ++ A+T +A + + ++ E+++ Sbjct: 3141 SEAKPD--QAKALEKQSLEEQQLDAKTQKQAESASEKKSETAEVSEVLAEKISEEKVEES 3198 Query: 132 ETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGN 191 + E A D +E K + + K ++Q K + +++ E+ Sbjct: 3199 KKPEVKESEAKPDQAKALE-KKSLEEQQLDAKTQKQAKSASEKKPETAEVSEVLAEKISE 3257 Query: 192 KGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRT 251 + + + S P+ +K + K K+ E + + Sbjct: 3258 ERVEESKKPEVK--ESEAKPDQAKALEKQSLEDQKLYAKTQKQAESTAEKKSETAEVSEV 3315 Query: 252 AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEII 311 ++ ++ + ++ + + A L ++ + + + E Sbjct: 3316 LAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAKSASEKKPETA 3375 Query: 312 VSGEK-GYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQ-LDSLHQTEVTLPSRG 369 E + +++ ++ + D + +E Q LD+ Q + + Sbjct: 3376 EVSEVLAEKISEERVEESKKPEVKESEAKPDQAKALEKQSLEEQKLDAKTQKQAESTAEK 3435 Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429 + +++ ++ + E + + A+ + +Q +D Sbjct: 3436 KSETAEVSEVLAEKISEEKVEESKKPEVKESEAKPDTAKALEKQS----------LDEQQ 3485 Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKG 489 ++ K ++ K S + + V IS E + + V ES K Sbjct: 3486 LDAKTQKQAESAAEKNSEMAEVSEVFAEKISE----EKVEESKKPDVKESEAKPDQA--- 3538 Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 ++ +L + + Q + + ++V L + VE + Sbjct: 3539 ----KTLEKQSLEEQQLDAKTQKQAESASEKKSETAEVSEVLAEKISEEKVEESKK---- 3590 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 E+ + ++ ++ ++ + +Q + + + E + + Sbjct: 3591 ------PEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAESASEKKSETAEVSEVLAEK 3644 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 S E ++++ E + + + ++ + + + E Sbjct: 3645 ISEEKVEESKKPEVKESEAKPDQAKALEKQSLEEQQLDAKTQKQAKSASEKKPETAEVSE 3704 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + P + + S P VK++ Sbjct: 3705 VLAEKISEERVEESKKPEVKESEAKPDQAKALEKQVEESKKPEVKES 3751 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 65/657 (9%), Positives = 174/657 (26%), Gaps = 37/657 (5%) Query: 87 QALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVV 146 + + +E E + SLEE ++ E E N Sbjct: 3798 EKISEEKAEVFKQPEVKESEAKPDQAKALEKQSLEEQKLDEKTQKQGELEFD---NKSKK 3854 Query: 147 SNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRY 206 + E + + D K +Q ++ ++ + V+ +++ K Sbjct: 3855 AEPEVKESEAKPDQAKALVKQALEEQKLEEKTEKQVKTKSDKKSEKAEVSEVLAEKISEK 3914 Query: 207 SVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFE 266 + + K + + LE A V ++ S + E Sbjct: 3915 KPEEAKQPEAKESESKPDQAKALEKRALEEQKLEEKAKKQVKTKSEKKSEQAEVSEVLAE 3974 Query: 267 YLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMK 326 + + + + L K+A+ + ++ +E V + + K + Sbjct: 3975 KISEKKPEEAKQPEVKDSETKSDQAKALEKQALEEQKLEEKTEKQVKTKSDKKSEKAEVS 4034 Query: 327 LLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQT---------- 376 ++ + E P S + + + I + Sbjct: 4035 EVLAEKISEKKLEEAKQPEVKESEAKPDQAKALEKRALEEQKRKKISEKKAEEAKQPEVK 4094 Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNN 436 E+ D + + +T + + +Q +++G++ + + ++ Sbjct: 4095 ESETKSDQAKAFEKQALEEQKLEEKTEKQVKTKSYKQSEKAEVSGVLAEKISEKKAEEAK 4154 Query: 437 R-SVEKK---------LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTY 486 + V++ L+E +++ QV S+ + + + + E ++ Sbjct: 4155 QPEVKESETKPDQAKALEEQKLEEKTEKQVKTKSD---KKSEKAEVSEVLAEKISEKKPE 4211 Query: 487 CKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF 546 ++ + E+ L + + + +K+ E Sbjct: 4212 EAKQPEVKESETKPDQAKALEEQKLEEKANKQVKTKS----------EKKPEQAEVSEVL 4261 Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 I+ E + QA + +K ++ ++ Sbjct: 4262 AEKISEKKAEEAKQPEVKDSETKSDQAKALEKQALEEQKLEEKTEKQVKTKSDKKSEKAE 4321 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 E I + +EE+ K + + A + ++ Sbjct: 4322 VSEVLAEKISE-KKAEEAKQPEVKESETKPDQAKALEEQKLEEKANKQVKTKSEKKPEQA 4380 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + E + P +E + +KT + K Sbjct: 4381 EVSEVLAEKISEKKPEEAKQPEVKESEAKPDQPKALEKQALEEQKLEEKTEKQVKTK 4437 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 16/185 (8%), Positives = 48/185 (25%), Gaps = 2/185 (1%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +K+ E I+ + P QA + K Sbjct: 3784 EKKPETAEVSEVLAEKISEEKAEVFKQPEVKESEAKPDQAKALEKQSLEEQKLDEKTQKQ 3843 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 E + +++ P+ + E D + + ++ + ++ T ++V Sbjct: 3844 GELEFDNKSKKAEPEVKESEAKPDQAKALVKQALEEQKLEEKTEKQVKTKSDKKSEKAEV 3903 Query: 654 SS--IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 S + + + + +P + + + + + + S Sbjct: 3904 SEVLAEKISEKKPEEAKQPEAKESESKPDQAKALEKRALEEQKLEEKAKKQVKTKSEKKS 3963 Query: 712 IVKKT 716 + Sbjct: 3964 EQAEV 3968 >gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7] gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7] Length = 714 Score = 45.7 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 N+ EL E KK G +Y KV RVE AF++ GFL + Sbjct: 611 NKAVEL-IEKIVKKAQVGEVYDGKVVRVED--NYAFINLFDGTDGFLHISD 658 >gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] Length = 718 Score = 45.7 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 23 NRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLE 73 N+ EL E KK G +Y KV RVE AF++ GFL + Sbjct: 611 NKAVEL-IEKIVKKAQVGEVYDGKVVRVED--NYAFINLFDGTDGFLHISD 658 >gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM 12163] Length = 738 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 23/108 (21%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 625 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 671 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVA 104 + G + +I DY Q+ +L+ + Sbjct: 672 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 719 >gi|221505107|gb|EEE30761.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1433 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 40/158 (25%), Gaps = 4/158 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+GS ++ + +E + + E + ++ + E + Sbjct: 49 ERGSRKGKRRCPESADRPGARELVTPADAAREDAEENGGSRAGAVNAEKTRPDVRTREES 108 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+ + + R + H + + + Sbjct: 109 ARHREVDKPQSREQKGKKEHGEEGDKRAGRSSQGRRLLARAEGSCARESTKSEKNTQKAK 168 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + E+ ++ R W+RR+ Sbjct: 169 GGEEE----EGHAQKEITEEEMKRKRREEEQRAWERRR 202 >gi|221057368|ref|XP_002261192.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|194247197|emb|CAQ40597.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 1123 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 26/102 (25%) Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + E +++R+R P ++ ++ + Sbjct: 509 EKGGETQEGEDPNQNRKKRKRDEGEPNEQPNEQPNEQPNEQPNEQPNEQPNEQTNEQTNA 568 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 N N N S P P ++ + K+T Sbjct: 569 QSNAQSNEQSNEQTNEQPSENPNENPHDGENDRENATGTKRT 610 >gi|169825247|ref|YP_001692858.1| hypothetical protein FMG_1550 [Finegoldia magna ATCC 29328] gi|167832052|dbj|BAG08968.1| conserved hypothetical protein [Finegoldia magna ATCC 29328] Length = 1837 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 56/220 (25%), Gaps = 13/220 (5%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL-FYIE 566 + + + VV Y E E + I + L I+ Sbjct: 1504 NKETGKLEVKEERTEPKNKVVEYGSKTDGEFKYESEKAYD--IIIRENPNLEAGKTNVIQ 1561 Query: 567 KGSP----------VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 +G P V+ K ++ Q + + V + + P ++ ++ Sbjct: 1562 EGKPGKTETTVKIENSKEVSRDTKTITEKQDKIIEIGTKNVCEIPPVKPEDPTKPGKEDP 1621 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 E+ T ++ + + P + + + +P + Sbjct: 1622 TKPGKEDPTKPGKEDPTKPGKEDPTKPGKEDPTKPGKEDPTKPGEKDPENPTKPGEKDPE 1681 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 N + G + + P + +T Sbjct: 1682 NPTKPGEKDPEKPGTPGENKPNEPGTPGEKPNEPGTPGET 1721 >gi|297465505|ref|XP_001788499.2| PREDICTED: repetin [Bos taurus] Length = 1102 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 40/162 (24%), Gaps = 6/162 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + + +DE + ED Q + T Sbjct: 813 DRQTHEDEQTRQRRDRQTHEDEETRQRRDRQTHEDEETRQRRDRPTREDQQTGQRRDRQT 872 Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R+RR R+ D D + Q + + + Sbjct: 873 REDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRPTREDQQTGQRRDRQTREDE 932 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + T E E + D + +R++ Sbjct: 933 QTRQRRDRQTH--EDEQTHEDEQTRQRQDRQTHEEDQNRRQQ 972 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 4/158 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + + +DE ++ ED + + T Sbjct: 785 DRQTHKDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQRRDRQT 844 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R+RR R P + G D + ++ D + H Sbjct: 845 HEDEETRQRRDR--PTREDQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQTHE 902 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P T E + + D ++ ++R+ Sbjct: 903 DEQTRQRRDRP--TREDQQTGQRRDRQTREDEQTRQRR 938 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 39/159 (24%), Gaps = 6/159 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + + +DE ++ +D Q + T Sbjct: 743 DRETHEDKQTPQRRDRQTHEDQQTGQRQDRQTHEDEQTRQRRDRQTHKDEQTRQRRDRQT 802 Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R+RR R+ D D + Q D E + Sbjct: 803 HEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQ--RRDRQTHEDEETRQRRDRPTRE 860 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + T + + D ++ R + Sbjct: 861 DQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQ 899 >gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] Length = 707 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 11/99 (11%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH-------PDYYQI 81 E + G IY KVTR+ AFV GG + G + +I DY Q+ Sbjct: 612 IEDITAEVEVGRIYPGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSL 120 +L+ + T P D + Sbjct: 669 GQEVPVKVLEIDRQGRIRLSMKEAVATEEASAQPQDSAE 707 >gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 711 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + P Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPE 703 Query: 117 DHSLEEVA 124 + E+ Sbjct: 704 APASEQAE 711 >gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5] gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5] Length = 775 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 25 VEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFL 72 +E++ E + K G++Y KV RVEP AF++Y + G L Sbjct: 692 IEDVGTEKKEVKPKVGDVYEGKVVRVEPY--GAFIEYAPGKVGLLHVS 737 >gi|194377482|dbj|BAG57689.1| unnamed protein product [Homo sapiens] Length = 1011 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 841 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 900 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 901 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 960 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 961 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1000 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 865 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 924 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 925 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 984 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 985 EPSRKPKRRRAADVEPSLPEPKR 1007 Score = 41.1 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 840 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 896 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 897 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 950 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 951 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 1007 >gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 721 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 607 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 653 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + P Sbjct: 654 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPE 713 Query: 117 DHSLEEVA 124 + E+ Sbjct: 714 APASEQAE 721 >gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 711 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 23/128 (17%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKYAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN 116 + G + +I DY Q+ +L+ + P Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPE 703 Query: 117 DHSLEEVA 124 + E+ Sbjct: 704 APASEQAE 711 >gi|295087953|emb|CBK69476.1| transcription termination factor Rho [Bacteroides xylanisolvens XB1A] Length = 752 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 14/163 (8%), Positives = 37/163 (22%), Gaps = 1/163 (0%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 ++ ++ S + K V + + ++ Sbjct: 63 NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122 Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E+ KR+ R R+ A + + V+ + + Sbjct: 123 AKAENATTAPKRKVGRPRKSADAEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPA 182 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + A ++ + E + I K + Sbjct: 183 QQPTAEKKAKSKPAAETNKPAAEPNKPVAEKKVIDKPQKKAAP 225 >gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae Ep1/96] gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae Ep1/96] Length = 732 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 23/108 (21%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 619 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 665 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVA 104 + G + +I DY Q+ +L+ + Sbjct: 666 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 713 >gi|194382726|dbj|BAG64533.1| unnamed protein product [Homo sapiens] Length = 992 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 822 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 881 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 882 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 941 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 942 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 981 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 846 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 905 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 906 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 965 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 966 EPSRKPKRRRAADVEPSLPEPKR 988 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 821 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 877 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 878 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 931 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 932 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 988 >gi|327288610|ref|XP_003229019.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase MLL-like [Anolis carolinensis] Length = 3817 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 15/161 (9%), Positives = 43/161 (26%), Gaps = 3/161 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + K +Q + + + A +K + + E+ +SE + Sbjct: 1093 KMRKCQNLQWMPSKAYLQKQAKAAKRKEKRSKPNEKKESQAGKGQSEPGQKAAPAQPPLP 1152 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 G +R R+P+ + + G + + + + + + Sbjct: 1153 KEGQTPRRASDPVARKPSEEKGEEGPPPTLPDPKPALPSVTRKSGKQAAPSAPAPPVPAL 1212 Query: 684 HGFTENYDVSI---PPVSTPEMESSNSSSDPIVKKTRWWKR 721 + P + ++ K+ + R Sbjct: 1213 APGPPKKEAPKILVPAEPKKKAAPPQDAAIEQSKQKKITPR 1253 >gi|221046306|dbj|BAH14830.1| unnamed protein product [Homo sapiens] Length = 992 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 822 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 881 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 882 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 941 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 942 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 981 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 846 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 905 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 906 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 965 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 966 EPSRKPKRRRAADVEPSLPEPKR 988 Score = 41.1 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 821 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 877 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 878 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 931 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 932 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 988 >gi|332359681|gb|EGJ37498.1| internalin protein [Streptococcus sanguinis SK355] Length = 859 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 11/191 (5%) Query: 535 KRATIVEYEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 K + E E + IN LA I + + + SD+ P + Sbjct: 664 KNLNLAENELKNLEGINQFRALDNLAVNKNKIITLALQEPNKTVTYINVSDNHIPKEELE 723 Query: 594 IECVWQDEALL---PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + +AL P + S+++ + +E ++ + + Sbjct: 724 LNENKIPKALAQHFPDVQGGSIDNNKPADAKDEKKEEPKQSEPNKADVQEKPASDKPASA 783 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLL--ENGAHGFTENYDVSIPPVSTPE---MESS 705 +S Q +D P N + EN + E + P E E+ Sbjct: 784 E--ASNQGASNDKERPAGTPEADLNERTVDSENSSKPSLEEAPTAENPELKDELAQAENK 841 Query: 706 NSSSDPIVKKT 716 + DP K+ Sbjct: 842 ENQKDPKDKEK 852 >gi|148557011|ref|YP_001264593.1| hypothetical protein Swit_4112 [Sphingomonas wittichii RW1] gi|148502201|gb|ABQ70455.1| hypothetical protein Swit_4112 [Sphingomonas wittichii RW1] Length = 333 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 71/227 (31%), Gaps = 28/227 (12%) Query: 334 RIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH 393 + + + F +G ++ E G + ++ T A+ IDV+ Sbjct: 125 PVRQLHAHQADAFEAAGWSELIEEAASGEAAFD-GGALHLSLTPAMSLIDVDG------- 176 Query: 394 CIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRAR 453 L A AR + L G I +D +E K + + + L + R Sbjct: 177 --WLDPAALALAGAAAAARMIVRHGLGGSIGIDLPTVEGKAARLAAAEAIDAILPQPFER 234 Query: 454 VQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 V + FG L++ R+R R S+ E + V + + Sbjct: 235 TAV---NGFGFLQIVRRRARPSLPERL--------------RRDPVGAAARALLRRAERT 277 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 A + V+ + + E E R G + + LA Sbjct: 278 PGAGARTLTAAPAVIDRIAGRT-DWAAELERRLGARLVLRADAGLAI 323 >gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 712 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 23/113 (20%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109 + G + +I DY Q+ +L+ + Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 >gi|157818909|ref|NP_001100943.1| zinc finger, imprinted 1 [Rattus norvegicus] gi|149027638|gb|EDL83189.1| rCG32037 [Rattus norvegicus] Length = 578 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 63/211 (29%), Gaps = 16/211 (7%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 DV +Y ++ + + + + L +YI K + L ++ Sbjct: 55 DVAVYFSQKEWQLLEPAQKDLYKDVMLENYGNLISVEYYIFKPKLITRLEQGIDLFAKEN 114 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-RRRRRRRRPATDH 644 P + E K+ + + + S V +++ ++ + Sbjct: 115 DTPGDPQQGEAGVSRSDTSAGKKTGNNSTKAETRKPDNSKNVSQEKLKKADQGGGSQNLR 174 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG--------FTENYDVSIPP 696 + SD QN E TN EN + + S PP Sbjct: 175 AEKTSKSDDRPSQNKEKSDSTSTTEAGKTTNPGNQENESAAPGTSSSQTPSTTAPQSTPP 234 Query: 697 VSTP-------EMESSNSSSDPIVKKTRWWK 720 + + +++SS++P K R K Sbjct: 235 EKSTSGKDGQGKSPNTSSSTNPKRKPARQGK 265 >gi|118084313|ref|XP_416932.2| PREDICTED: similar to KIAA1802 protein [Gallus gallus] Length = 948 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 36/169 (21%), Gaps = 3/169 (1%) Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + V E A+ + + + P Sbjct: 230 VAVSPEPRRHSPAVSPEPRRHSPAMSPEPRRHSPAVSPEPRRHSPAVSPEPRRYSPGVSP 289 Query: 610 ESLEDIQDNIVSEESTGV---IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 E + RR + RRPA+ + + Sbjct: 290 EPKKPTPAVSPEPRRYSPAVSPEPRRHASQMRRPASASSPEIRRPAPAVSPESWRPGPTV 349 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 EP T H + ++ S PE S + P ++ Sbjct: 350 SPEPWRSTPHEMQKSSTVSPWAPKASIESRRSAPESRRSGPVASPESRR 398 >gi|242010968|ref|XP_002426229.1| hypothetical protein Phum_PHUM243450 [Pediculus humanus corporis] gi|212510292|gb|EEB13491.1| hypothetical protein Phum_PHUM243450 [Pediculus humanus corporis] Length = 1190 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 6/149 (4%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + D + +E L + ++S+++ + + + Sbjct: 680 NDKNTDEEVAPKKIKMNVMDIDDVASNIDSNEDSLSVVDNQSVKEETAVEGGGNTNEINK 739 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 RR R+R+ + T +S + + + EP +I N E+ Sbjct: 740 PRRGRKRKNQNPTRCAIPVR----TSHDDGMSTDGEGSHEPDNIFCTKKESNLPKTEAED 795 Query: 690 YD--VSIPPVSTPEMESSNSSSDPIVKKT 716 + PV ++ S ++ K+ Sbjct: 796 ANVKSDEKPVVETSQKNEVSENEGCKKEK 824 >gi|157825781|ref|YP_001493501.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str. Hartford] gi|187611278|sp|A8GNL8|PNP_RICAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157799739|gb|ABV74993.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str. Hartford] Length = 747 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 32/175 (18%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y G + GF Sbjct: 600 ASDRDKLKVAL---DKIKAIAVEPE-----IGEIFNGTVMKVLDS--GAFINYLGTKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + EI A+ E V + GD+ + A Sbjct: 650 VHISEI---------------------AEERIETVGSVLKQGDIVKVKLIGFDNKGK-AK 687 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + + ++ S N +NV + K S + K++ ++ + ++ + Sbjct: 688 LTIKNADKDKSSNNPKQKNNVNNSKENSEPERRDSSKKRAWNEDNNSDTTEVITE 742 >gi|251766818|ref|ZP_04819825.1| 60S ribosomal protein L19 [Burkholderia mallei PRL-20] gi|243064763|gb|EES46949.1| 60S ribosomal protein L19 [Burkholderia mallei PRL-20] Length = 272 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 11/149 (7%), Positives = 35/149 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ +P K + S + P K ++ + ++ Sbjct: 64 ERQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQA 123 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +++ +R+ P+ S + + + + Sbjct: 124 PSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAK 183 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVK 714 P + + S+ + + Sbjct: 184 RQAPSAKRQAPSAKRQAPSAKRQAPSAKR 212 >gi|302688077|ref|XP_003033718.1| hypothetical protein SCHCODRAFT_256406 [Schizophyllum commune H4-8] gi|300107413|gb|EFI98815.1| hypothetical protein SCHCODRAFT_256406 [Schizophyllum commune H4-8] Length = 681 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 35/155 (22%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + T + S + PS + + ++ P P S + Sbjct: 368 RFSRSEDRSETPTRAPSRTPTPSQGRALNGSATRKSPTPTPSSRKTPTPTSRTNGKNPAA 427 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R ++P + + + P T Sbjct: 428 SRKSPTPAPRMQKPRAGSEEPQTNTPKPPRATKAATTGGRRGPPPSATKRKQKAPTTRKE 487 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E SI + + KK W Sbjct: 488 KEEDRRSIAHYPSISADEDAIPVWTQPKKAGNWDE 522 >gi|170087556|ref|XP_001875001.1| bromodomain containing protein [Laccaria bicolor S238N-H82] gi|164650201|gb|EDR14442.1| bromodomain containing protein [Laccaria bicolor S238N-H82] Length = 1181 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 52/166 (31%), Gaps = 8/166 (4%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++ + I+ + ++ V A + S + + Q E + P +E Sbjct: 859 SIEVDIKHEGQEATVDMEPAVDADKSMEVVEQSLLEQNMEAPDQPVEEQLEPIQPSSPTE 918 Query: 611 SLEDIQDNIVSEESTG--------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 +++ + ++ + +R++RR+ + A + D V+ S + Sbjct: 919 AVKPLTTRSANKAAQALVIEVLDTPATRRQKRRQGKDAAAEAPDGNAVAGPSRPTRISTA 978 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 S + + +E+ +E P N Sbjct: 979 SRKARESMAQQEENEEVESDLSELSEAGSDGKEAERQPLSRGKNKK 1024 >gi|312865458|ref|ZP_07725685.1| conserved hypothetical protein [Streptococcus downei F0415] gi|311098976|gb|EFQ57193.1| conserved hypothetical protein [Streptococcus downei F0415] Length = 423 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 42/152 (27%), Gaps = 5/152 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVSEESTGVI 628 + + A + D A K ++ ++ + + Sbjct: 249 AQEQPKEIAELEDKLAHAKVEADEAMADYNDRIAERKADKKKAHDEKMAKKLKAKQERED 308 Query: 629 RKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++R + +R+ R + + ++V S D ++ A Sbjct: 309 KRREKVAQKRQEREEKEAKNPKKKAKKTAKAKDVAKKSSDTKTTDKSAKESTKAKSRAKK 368 Query: 686 FTENYDVSIPPVSTPEMESSN-SSSDPIVKKT 716 ++ D E E + ++ P K T Sbjct: 369 VSQKVDQPADKTKESEAEKTKETAKKPETKGT 400 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 54/214 (25%), Gaps = 22/214 (10%) Query: 531 LLNQKRAT--IVEYEARFGVSINVVIGIELADKLFY--IEKGSPVQALVNTGHKVGSDSQ 586 LLN + + G+ I VV + + + P + + + Sbjct: 210 LLNHQNGWASLCLILYMLGLYILVVYQATTQAAFYQDLLAQEQPKEIAELEDKLAHAKVE 269 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 A + + + + E K ++R+ R + Sbjct: 270 ADEAMADYNDRIAERKADKKKAHDEKMAKKLKAKQEREDKRREKVAQKRQEREEKEAKNP 329 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + ++V S D ++ A ++ D E E + Sbjct: 330 KKKAKKTAKAKDVAKKSSDTKTTDKSAKESTKAKSRAKKVSQKVDQPADKTKESEAEKTK 389 Query: 707 -SSSDPIVKKTR-----------------WWKRR 722 ++ P K T+ KRR Sbjct: 390 ETAKKPETKGTKSNHSSSKKPKSKSKKKKGKKRR 423 >gi|195377218|ref|XP_002047389.1| GJ13409 [Drosophila virilis] gi|194154547|gb|EDW69731.1| GJ13409 [Drosophila virilis] Length = 1893 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 16/181 (8%), Positives = 48/181 (26%), Gaps = 16/181 (8%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 K ++ + ++ S + + + + + + ++ Sbjct: 355 DPPKERKEKQRDRFKEKLRERSKESRIDSSKERLKGRSSERFREKKSERISERQRINSKE 414 Query: 615 IQD-NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 ++ + + + R+ + D + ++ + + S+D E S Sbjct: 415 RRECSNDKQRERSKDIRECSNNRQSERSKDRKEFPNDKNIERPKQRRESSYDKQRERSKD 474 Query: 674 TNHNLLENGAHGFTENYDVSIPPV-------------STPEMESSNSSSDPIVKKTRWWK 720 + + E D SI S + S ++ + K Sbjct: 475 KR--IGDKPRERSKEKLDRSIEKQRERSKEKKRDSDQSKEKSTSRSTEKLSLESKKGRRD 532 Query: 721 R 721 R Sbjct: 533 R 533 Score = 41.9 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 10/170 (5%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+ ++ S+ S + I + E + S + + + + Sbjct: 380 RIDSSKERLKGRSSERFREKKSERISERQRINSKERRECSNDKQRERSKDIRECSNNRQS 439 Query: 624 STGVIRKR-------RRRRRRRRPATDHHDAGVVSDV--SSIQNVIDDSFDMYMEPSDIT 674 RK R ++RR + D + + D +E Sbjct: 440 ERSKDRKEFPNDKNIERPKQRRESSYDKQRERSKDKRIGDKPRERSKEKLDRSIEKQRER 499 Query: 675 NHNLLENGAHGFTENYDVSIPPVS-TPEMESSNSSSDPIVKKTRWWKRRK 723 + + ++ S +S + + S+D KK+R R + Sbjct: 500 SKEKKRDSDQSKEKSTSRSTEKLSLESKKGRRDRSNDGRSKKSRHRTRSR 549 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 5/160 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + N + + D+ E + + I S+ + + E Sbjct: 344 ELSKDESNRCKDPPKERKEKQRDRFKEKLRERSKESRIDSSKERLKGRSSERFREKKSER 403 Query: 629 RKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVI-DDSFDMYMEPSDITNHNLLENGAH 684 R+R + RR + D N + S D P+D + Sbjct: 404 ISERQRINSKERRECSNDKQRERSKDIRECSNNRQSERSKDRKEFPNDKNIERPKQRRES 463 Query: 685 GFTENYDVSI-PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + S + E S D ++K R + K Sbjct: 464 SYDKQRERSKDKRIGDKPRERSKEKLDRSIEKQRERSKEK 503 >gi|323450249|gb|EGB06131.1| hypothetical protein AURANDRAFT_65834 [Aureococcus anophagefferens] Length = 1028 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 32/148 (21%), Gaps = 11/148 (7%) Query: 564 YIEKGSPVQAL-VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 +E A + P K + D+ + ++ Sbjct: 615 ALEAFEAATAPPEPEVKPLLVLRDYPDLPKANQPAANDDDE---DAPAPKKRGPKKKKAD 671 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN----- 677 E ++ +++ + N +D+ P + Sbjct: 672 EEDAPKKRGPKKQAANEE--EDAAPKKRGPKKKAANEEEDAAPKKRGPKKKAERDDDAPA 729 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESS 705 + GA E+ P+ Sbjct: 730 KKKRGAKAPAEDEAPPAKKRGPPKKRED 757 >gi|297472686|ref|XP_002686117.1| PREDICTED: repetin-like [Bos taurus] gi|296489627|gb|DAA31740.1| repetin-like [Bos taurus] Length = 1066 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 40/162 (24%), Gaps = 6/162 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + + +DE + ED Q + T Sbjct: 813 DRQTHEDEQTRQRRDRQTHEDEETRQRRDRQTHEDEETRQRRDRPTREDQQTGQRRDRQT 872 Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R+RR R+ D D + Q + + + Sbjct: 873 REDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRPTREDQQTGQRRDRQTREDE 932 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + T E E + D + +R++ Sbjct: 933 QTRQRRDRQTH--EDEQTHEDEQTRQRQDRQTHEEDQNRRQQ 972 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 45/158 (28%), Gaps = 4/158 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + + +DE ++ ED + + T Sbjct: 785 DRQTHKDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQRRDRQT 844 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R+RR R P + G D + ++ D + H Sbjct: 845 HEDEETRQRRDR--PTREDQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQTHE 902 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P T E + + D ++ ++R+ Sbjct: 903 DEQTRQRRDRP--TREDQQTGQRRDRQTREDEQTRQRR 938 Score = 41.9 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 39/159 (24%), Gaps = 6/159 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + + +DE ++ +D Q + T Sbjct: 743 DRETHEDKQTPQRRDRQTHEDQQTGQRQDRQTHEDEQTRQRRDRQTHKDEQTRQRRDRQT 802 Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R+RR R+ D D + Q D E + Sbjct: 803 HEDEQTRQRRDRQTHEDEQTRQRRDRQTHEDEETRQ--RRDRQTHEDEETRQRRDRPTRE 860 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + T + + D ++ R + Sbjct: 861 DQQTGQRRDRQTREDEQTRQRRDRQTHEDEQTRQRRDRQ 899 >gi|194390556|dbj|BAG62037.1| unnamed protein product [Homo sapiens] Length = 1043 Score = 45.3 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 873 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 932 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 933 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 992 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 993 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1032 Score = 43.4 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 897 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 956 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 957 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1016 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 1017 EPSRKPKRRRAADVEPSLPEPKR 1039 Score = 40.7 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 872 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 928 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 929 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 982 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 983 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 1039 >gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] Length = 495 Score = 45.3 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 13/168 (7%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G +I+ V E A +LF IE+ +T + + P + + + Sbjct: 341 GKAISFVSEDE-ASELFAIERLIQKILPRHTLEGFEPEMKVPESRLDSRPIKAKKPKKTH 399 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 +D Q + + K RR T++ D + + + D Sbjct: 400 APRVEHKDGQRSGENRSGHKQGAKPAPRRN-----TENKDGAAKKEGGNAKKRPTDGG-- 452 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 +P N NG++ + + P + + P+ + Sbjct: 453 --KPRSKGNGENRGNGSNFGSGK---PKSDATKPRRQGPRPARKPVAQ 495 >gi|325120841|emb|CBZ56396.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 1211 Score = 45.3 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 36/154 (23%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + S + + K +++ +E Sbjct: 736 EQEREEKAEVKRSRKRREKESRASRGSSGGKRDEKKRSEKKAKERRDKESGHEKERGKSR 795 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K R R R+R T + S+ + + D + ++G Sbjct: 796 EKERGRERKRDRKTSSDEKRREDKSKSLHSSAVEDQKKKTRTGDRESRKARKSGRKRSRS 855 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + ++ +RR Sbjct: 856 GERGKGEKGDRREAAKRDRERSRKDDRSEHKRRR 889 Score = 40.7 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 4/135 (2%) Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 +K E + ++ +E +R R+RR + + + Sbjct: 706 EKGDEVEEGTRQGSRQEGAARRRSRSPSVQEQEREEKAEVKRSRKRREKESRASRGSSGG 765 Query: 651 SDVSSI---QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 + + + E G + S + +S +S Sbjct: 766 KRDEKKRSEKKAKERRDKESGHEKERGKSREKERGRERKRDRKTSSDEKRREDKSKSLHS 825 Query: 708 SS-DPIVKKTRWWKR 721 S+ + KKTR R Sbjct: 826 SAVEDQKKKTRTGDR 840 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 46/177 (25%), Gaps = 15/177 (8%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 + + E+ + V+ K S+ S K E ++ ES + + Sbjct: 731 SPSVQEQEREEKAEVKRSRKRREKESRASRGSSGGKRDEKKRSEKKAKERRDKESGHEKE 790 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 E+ G RKR R+ + + S Q + D + + Sbjct: 791 RGKSREKERGRERKRDRKTSSDEKRREDKSKSLHSSAVEDQKKKTRTGDRESRKARKSGR 850 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEM---------------ESSNSSSDPIVKKTRW 718 +G G E D E + S VKK Sbjct: 851 KRSRSGERGKGEKGDRREAAKRDRERSRKDDRSEHKRRRTEKDSREKRRRDVKKRDD 907 >gi|326921540|ref|XP_003207015.1| PREDICTED: WD repeat-containing protein 60-like [Meleagris gallopavo] Length = 927 Score = 45.3 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 47/229 (20%), Gaps = 28/229 (12%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLL-------NQKRATIVEYEARFGVSINVVIGIE 557 R + ++ +L N+ R E + V I Sbjct: 4 RWLRSGACHRRTKEDTWK-SEELRKHLRASQLESQNEDRKHR---EKKLQKE-KVGHDIG 58 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES---LED 614 + ++G + V D + QD ES E Sbjct: 59 THKDEYK-DRGKSKERTRERLRSVERDRDKMRERRKERHRDQDRERHQDKLKESSLEKER 117 Query: 615 IQDNIVSEESTGVIRKRRRRR--------RRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + + + +R + + + D G ++ + Sbjct: 118 YSVPKDKDRESNREHDKMHKRHEIKQTDMQNNLKSFEGRDKGHHRRREKSRHRLGKDRLS 177 Query: 667 YMEPSDITNHNLLENGAHGFTENY----DVSIPPVSTPEMESSNSSSDP 711 E + D P ++S + Sbjct: 178 KERSHKSYKKEEEERHKSKRSTEEYSHGDRGQPAEDRKRVKSGENERKK 226 >gi|324499471|gb|ADY39774.1| Myosin-9 [Ascaris suum] Length = 2074 Score = 45.3 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 82/678 (12%), Positives = 209/678 (30%), Gaps = 54/678 (7%) Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPN---DHSLEEVAP 125 L LE D +I S +A ++ Q + + +++ + E Sbjct: 1124 LASLEEQLDGERISRSQSEAEKRQIAAEQREMKDAMEELQKKLYDLNTILVKREEELFQA 1183 Query: 126 IANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIV 185 +A + +E + I+ S E+ + + L Q + Sbjct: 1184 LAKYDEEQAKGQILVKQLKNASAELQEAKEDIENERSLRMKSERGKRDYMEELEALKQEL 1243 Query: 186 KEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGM 245 E + A V ++ +L K S+ + + ++ A+ ++ Sbjct: 1244 LESQDKTQANVEMRAEREKQFQLLNMGFKKELEESKTSSELKINELKQKYAKQIDALNDQ 1303 Query: 246 GVILRT--AGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPH-------LVYEEGNLIK 296 L+ + ++K I+++ L + + +++ L ++ Sbjct: 1304 IDQLKRLKHQSEKSKELIEKELSEKNMLLEQCQGAKVDAERKRKVAESGLLEWQTKANDV 1363 Query: 297 RAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLD 356 R +S+ V + + + + ++V + + G+E Sbjct: 1364 ELERASLANALSKAQVEIGQLHSSLESKEDDIASLQKKVVDLSDQLTESAEQLGVEKSQK 1423 Query: 357 SLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREH---CIEDTALQTNLEAAEEIARQ 413 + Q +V + E V D R E ++ + + +EE +Q Sbjct: 1424 GVLQEKVRDLENEL----EAEREVREDDEGTRQKMEKEIVNLKQQLMDLKSKGSEEALKQ 1479 Query: 414 LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEM--SRQR 471 + + + + +E+ + + ++A+ ++ + +E+ R + Sbjct: 1480 AEESR-------KKLCKDLEACQKQLEEAQADRQRSEKAKKKLMQENEDARVELDNLRAQ 1532 Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 R + + G + + + + V E + ++ Sbjct: 1533 YREMEKKQRKFDQQLAEERGKTATAIAERDQLAQDVRERGSK-----------VLIMAKE 1581 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKL------FYIEKGSPVQALVNTGHKVGSDS 585 +++ R + E E R S+ + + + K +E+ + K Sbjct: 1582 MDEMRGCLEELE-RLKRSLQLELDNLMTTKDDAGRSAHELEREKRLLEAEVAKMKEEILE 1640 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR-RPATDH 644 SY + + + E L K++ + + E +RR +RR R D Sbjct: 1641 LEDSYQSSEDARLRLEVNLQTVKNDLEKAVAVKEQENEE------KRRNAQRRVRELEDE 1694 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 DA + S++Q ++ +D+ + S+ + E+E Sbjct: 1695 LDAERRTRASAVQQKKKMEGELNKASADLDALTRQRDDLSRQLRKVTQSLKDLQQ-ELEE 1753 Query: 705 SNSSSDPIVKKTRWWKRR 722 + + + + R R+ Sbjct: 1754 MRTEKETTILRARDLDRK 1771 >gi|221485413|gb|EEE23694.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 477 Score = 45.3 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 31/133 (23%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 S + + EA K+ + + K++RRR+ + Sbjct: 290 PDEKSGSSESKREKKREAKACDEKASETQQAAQKSGEDREKNGSAKKKRRRQEAGDGRES 349 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 S Q + + G E D ST + Sbjct: 350 DSGSSRDSESRAQESRKATSKSEEGAVVEKEKKKAKRGNAADREATDCEPSRASTKSQRA 409 Query: 705 SNSSSDPIVKKTR 717 S + K + Sbjct: 410 SKPEEEETSGKEK 422 >gi|218441061|ref|YP_002379390.1| von Willebrand factor A [Cyanothece sp. PCC 7424] gi|218173789|gb|ACK72522.1| AAA ATPase containing von Willebrand factor type A (vWA) domain [Cyanothece sp. PCC 7424] Length = 1568 Score = 45.3 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 49/171 (28%), Gaps = 2/171 (1%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 V + + + IE+ S + + + + L Sbjct: 76 VQPTLKENPNSSQETIDIEQNSQ-PIKIQKLCSTCQQEKEEKILQPQPLTQANVPLESET 134 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ-NVIDDSFDM 666 ++E+ + Q + + R + +++ V ++++ I+ + + Sbjct: 135 QTENQQAEQPKQTENNQELNLENAPKTRENKSLNSNNPPETVNNNLAKIKAEKEQNQPEK 194 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 E SD + N + S P S + S +T+ Sbjct: 195 APENSDKKRESDSSKSQEDSPSNANQSSPNTSENKTPSPEKREKDKPLETK 245 >gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae] Length = 708 Score = 45.3 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 11/100 (11%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH-------PDYYQI 81 E + G +Y KVTR+ AFV GG + G + +I DY Q+ Sbjct: 612 IEDITAEVEVGRVYQGKVTRIVDFG---AFVAIGGGKEGLVHISQIAEKRVEKVTDYLQL 668 Query: 82 PFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLE 121 +L+ + S E Sbjct: 669 GQEVPVKVLEIDRQGRIRLSIKEAVSAEKPAETETQISAE 708 >gi|20137613|sp|O15061|SYNEM_HUMAN RecName: Full=Synemin; AltName: Full=Desmuslin Length = 1565 Score = 45.0 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + +D Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + ++ + + + + + + D Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577 >gi|126326697|ref|XP_001377564.1| PREDICTED: similar to KIAA1604 protein [Monodelphis domestica] Length = 935 Score = 45.0 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 8/164 (4%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPS----YDKNIECVWQDEALLPIPKSESLEDI 615 +EK + + + + + + ++ +SL+D Sbjct: 772 HMENKMEKRQQETRTEGERRSEKNTDRNLRNPVWRENSSKYASERDSTTERNNYKSLKDR 831 Query: 616 QDNI-VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS--SIQNVIDDSFDMYMEPSD 672 + + E+ K+RR RR + + + D + P+ Sbjct: 832 DHDKYIDPENKSDDTKKRRGERRNSFSENEREKHRNKDSENHRRKERSKSRERNRNNPNS 891 Query: 673 ITNHNLLENGAHGFTENYDVSIP-PVSTPEMESSNSSSDPIVKK 715 + NGA +E + P + + P +K Sbjct: 892 RDEQDRRWNGAEKESEKHSRRSEHPRESRRNHDRRRENSPARRK 935 >gi|119622637|gb|EAX02232.1| desmuslin, isoform CRA_c [Homo sapiens] Length = 1534 Score = 45.0 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + +D Sbjct: 381 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 435 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + ++ + + + + + + D Sbjct: 436 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 495 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 496 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 546 >gi|194377228|dbj|BAG63175.1| unnamed protein product [Homo sapiens] Length = 1076 Score = 45.0 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 7/153 (4%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + AP + + P+P S + ++E+ ++ +R+ Sbjct: 913 SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQ 972 Query: 636 RRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTE 688 R P G V + + EP + Sbjct: 973 RAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAA 1032 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 1033 DVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1065 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 930 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 989 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 990 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 1049 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 1050 EPSRKPKRRRAADVEPSLPEPKR 1072 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 22/177 (12%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 905 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 961 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D V S Sbjct: 962 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAAD------VEPSSPEPKRR 1015 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 +E + + P P+ + + + R Sbjct: 1016 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSLPEPKR 1072 >gi|156372821|ref|XP_001629234.1| predicted protein [Nematostella vectensis] gi|156216229|gb|EDO37171.1| predicted protein [Nematostella vectensis] Length = 1955 Score = 45.0 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 53/230 (23%), Gaps = 13/230 (5%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI-NV 552 R +A + R +L + + + I + Sbjct: 53 RFDEWIAFNSERLRPHRGGHLEHKEEKTQQEWRNGDRILAKWQDC-----KFYPAKILKI 107 Query: 553 VIGIELAD---KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 F N+ D + A ++ Sbjct: 108 NTDGSFEVLFYDGFKKTVQRSNIKPDNSKKTFPVDKELAMEKSERIERRAKLAAGRAERA 167 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 I R+ R RR + +S + + ++ ++ ++ Sbjct: 168 RKRSKELAGISPS-PPTSKRRERGRRTKAEEEMGMTSESSMSSPAEPPQEVPEADEVPVD 226 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS---SDPIVKKT 716 +++ A E TPE+E+S S+ K+ Sbjct: 227 TANMATDQTEREKAPETMETSQPITQNAKTPEIETSAHKETWSEKQEKED 276 >gi|112382237|ref|NP_663780.2| synemin isoform A [Homo sapiens] gi|119622636|gb|EAX02231.1| desmuslin, isoform CRA_b [Homo sapiens] Length = 1565 Score = 45.0 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + +D Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + ++ + + + + + + D Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577 >gi|221482032|gb|EEE20398.1| hypothetical protein TGGT1_063920 [Toxoplasma gondii GT1] Length = 1421 Score = 45.0 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 13/159 (8%), Positives = 32/159 (20%), Gaps = 5/159 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV-- 627 P K + + E+ + +E++ G Sbjct: 44 PASHGERESRKGKRRCPESADRPGARELVTPADAAREDAEENGGSRAGAVNAEKTRGDVR 103 Query: 628 --IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY-MEPSDITNHNLLENGAH 684 R R + + + + + E+ Sbjct: 104 TLEESERHREVDKPQSREQKGKKEHGEEGDKRAGRSSQGRRLLARAEGSCARESTESEKK 163 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E+ ++ R W+RR+ Sbjct: 164 TQKAKGGEEEEGHAQKEITEEEMKRKRREEEQRAWERRR 202 >gi|237835507|ref|XP_002367051.1| hypothetical protein TGME49_046630 [Toxoplasma gondii ME49] gi|211964715|gb|EEA99910.1| hypothetical protein TGME49_046630 [Toxoplasma gondii ME49] gi|221506274|gb|EEE31909.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 477 Score = 45.0 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 31/133 (23%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 S + + EA K+ + + K++RRR+ + Sbjct: 290 PDEKSGSSESKREKKREAKACDEKASETQQAAQKSGEDREKNGSAKKKRRRQEAGDGRES 349 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 S Q + + G E D ST + Sbjct: 350 DSGSSRDSESRAQESRKATSKSEEGAVVEKEKKKAKRGNAADREATDCEPSRASTKSQRA 409 Query: 705 SNSSSDPIVKKTR 717 S + K + Sbjct: 410 SKPEEEETSGKEK 422 >gi|195146210|ref|XP_002014080.1| GL23047 [Drosophila persimilis] gi|194103023|gb|EDW25066.1| GL23047 [Drosophila persimilis] Length = 1809 Score = 45.0 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 54/225 (24%), Gaps = 13/225 (5%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 ++ I R+ ++++ + + ++ Q I E E Sbjct: 1297 TVKPARVAPHEITRAPLREPMKFS---VATPLPAYRDGFMREQPVLVIDEQEEEEDDDQI 1353 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 V+ +++ IE+ P + P I + E Sbjct: 1354 VIDEVQMVINEERIEEVRPQVVVQLEPKIEPKQGTQPKRRDTIPRSKTEIKGEHKVIKEE 1413 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 Q + + K + P A + + V + P Sbjct: 1414 PRPKQRERILKRQDETTAKIKE----TMPKQKETTAKHRETIPKAKEVKYTLKETKPTPK 1469 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + T+ P + + P K+T Sbjct: 1470 ETKILSKDPKPTRKETKPPPKDTKPNPKEK------KAKPTPKET 1508 >gi|304388004|ref|ZP_07370175.1| IgA1 protease [Neisseria meningitidis ATCC 13091] gi|304337952|gb|EFM04091.1| IgA1 protease [Neisseria meningitidis ATCC 13091] Length = 1777 Score = 45.0 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521 + +I A + Q + A + R E + Sbjct: 998 QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1057 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 ++ ++ + E R + + V+A Sbjct: 1058 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1107 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640 K +E + T + +R R+RR P Sbjct: 1108 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1166 Query: 641 ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 A+ NV + E A E + Sbjct: 1167 DYMAASQDRPKRRGHRSVEQNNVEIAQAQAELVRRQQEERKAAELLAKQRAEAEREAQAL 1226 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E+ + R RK Sbjct: 1227 AARRKAEAEEAKRQAAELAHRQEAERK 1253 >gi|237836893|ref|XP_002367744.1| hypothetical protein TGME49_005120 [Toxoplasma gondii ME49] gi|211965408|gb|EEB00604.1| hypothetical protein TGME49_005120 [Toxoplasma gondii ME49] Length = 1413 Score = 45.0 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 41/158 (25%), Gaps = 4/158 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+GS ++ + +E + + E + ++ + E + Sbjct: 49 ERGSRKGKRRCPESADRPGARELVTPADAAREDAEENGGSREGAVNAEKTRGDVRTLEES 108 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+ + + R + H + + + + Sbjct: 109 ERHREVDKPQSREQKGKKEHGEEGDKRAGRSSQGRRLLAGTEGSCARESTESEKKTQKAK 168 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + E+ ++ R W+RR+ Sbjct: 169 GGEEE----EGHAQKEITEEEMKRKRREEEQRAWERRR 202 >gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium ICC168] gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium ICC168] Length = 734 Score = 45.0 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 20/111 (18%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 634 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 683 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 DY Q+ +L+ + P + E+ Sbjct: 684 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQGE 734 >gi|157120255|ref|XP_001653573.1| hypothetical protein AaeL_AAEL001570 [Aedes aegypti] gi|108883086|gb|EAT47311.1| conserved hypothetical protein [Aedes aegypti] Length = 1215 Score = 45.0 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 44/199 (22%), Gaps = 26/199 (13%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 R ++ + +S+ + P P K Sbjct: 299 RRSLAYW-----ISVLFEPEVTSEPN------AEPGAHPEPEPESTSEPEPEPKSPKAEP 347 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV------ 649 A + E + ES + ++ + AT + Sbjct: 348 EPEPAAAEHEPEVASEPEPESTSEPEPESKAEPSAEPKSNKKSKRATSGKCFNLWFSHIL 407 Query: 650 ------VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 + +++ N P A ++ S P P+ E Sbjct: 408 VLFFALLCNITVSFNKTFSIPFPDSHPPASEPEPESSPKAEPEPKSEPASEP---EPKAE 464 Query: 704 SSNSSSDPIVKKTRWWKRR 722 ++ KK W R Sbjct: 465 TTAKPKPAAQKKANPWTPR 483 >gi|121706172|ref|XP_001271349.1| Mis12-Mtw1 domain protein [Aspergillus clavatus NRRL 1] gi|119399495|gb|EAW09923.1| Mis12-Mtw1 domain protein [Aspergillus clavatus NRRL 1] Length = 581 Score = 45.0 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 13/174 (7%), Positives = 35/174 (20%), Gaps = 10/174 (5%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + F + ++ + + + P K ++ Sbjct: 80 DIEGFQFTRLPSKKSRPSVDAVPVPEKPDAGTENPPPQQRTPRRGRPPKKKPEVQPEGGA 139 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +R+ R TD + D + + Sbjct: 140 GTEVREKRAEGASKRQTRGSMRGTDAAAETQSESATRPSTRKRDDIESVPKEKKRRKGRP 199 Query: 679 LENGAHGFTENYDV----------SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ ++P TP ++ + + RR Sbjct: 200 SKSDVQERNGFVSPEPQQSGTAKITLPLADTPVIQRNKEMRKEAKGEKGSKSRR 253 >gi|302658311|ref|XP_003020861.1| SAP domain protein [Trichophyton verrucosum HKI 0517] gi|291184728|gb|EFE40243.1| SAP domain protein [Trichophyton verrucosum HKI 0517] Length = 725 Score = 45.0 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 36/151 (23%), Gaps = 1/151 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 V + P + E V + +S + D +E T Sbjct: 160 ELAVEDVTPAQPAPAPEPEPVKEPAQEPVQEPVQEPVKDESVNKTPSTDVEAIKEDTDES 219 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RKRRRR + P+ Q ++ E A Sbjct: 220 RKRRRRSQTPPPSPRSIALKKARLEEERQQSRSTQEEIKAEKRKEEQEAPAAALAIAEPP 279 Query: 689 NYDVSIP-PVSTPEMESSNSSSDPIVKKTRW 718 D + TP ++ K R Sbjct: 280 ARDTDVEMKEGTPPAPEPKQETEEDESKDRV 310 >gi|20521884|dbj|BAA92565.2| KIAA1327 protein [Homo sapiens] Length = 1804 Score = 45.0 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 25/255 (9%), Positives = 65/255 (25%), Gaps = 29/255 (11%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +G+ ++ + S + + A I H+ + ++R + +S Sbjct: 1473 SGFRTNEEIHSESYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMPKRKRKQHYLS 1532 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN---------------- 593 + Q + + + Sbjct: 1533 SEDEPDDN---PDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPKTSSETNSTTSRVM 1589 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATD 643 E + K E +D E+ +I+++R R R + TD Sbjct: 1590 EEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKMKDDSKTD 1649 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 V SS + + + + E +++ ++ + + Sbjct: 1650 TGIVTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVTSVRRRGRKPKRSLT 1709 Query: 704 SSNSSSDPIVKKTRW 718 S+ + ++ R Sbjct: 1710 VSDDAESSEPERKRQ 1724 >gi|317032329|ref|XP_001394641.2| ubiquitin-protein ligase Ufd4 [Aspergillus niger CBS 513.88] Length = 1809 Score = 45.0 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 44/159 (27%), Gaps = 15/159 (9%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I + + A + S A + + + D + + Sbjct: 4 RITRSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPAR--------RDRSVDAPEQS 55 Query: 624 STGVIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + ++ +R+RR + PAT +S + D + Sbjct: 56 NPSSSPRKSKRQRRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPAS 115 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + +++ + P + + + +S + K Sbjct: 116 RRKSSRSGKVSQDNASAAQPSPRRQKKRPSRASPDTIMK 154 Score = 41.1 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 16/141 (11%) Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 S N + + RK RR R A + + S Sbjct: 7 RSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPARRDRSVDAPEQSNPSSSPRKSKR 66 Query: 657 QNVIDDSFDMYMEPSDITN--------HNLLENGAHGFTENYDVSIPPVSTPE------- 701 Q S P+ + + + + PP S + Sbjct: 67 Q-RRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPASRRKSSRSGKV 125 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 + + S++ P ++ + R Sbjct: 126 SQDNASAAQPSPRRQKKRPSR 146 >gi|261289595|ref|XP_002604774.1| hypothetical protein BRAFLDRAFT_70623 [Branchiostoma floridae] gi|229290102|gb|EEN60784.1| hypothetical protein BRAFLDRAFT_70623 [Branchiostoma floridae] Length = 741 Score = 45.0 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 53/172 (30%), Gaps = 9/172 (5%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 +LA + I ++ V K + D++ DE K + Sbjct: 75 KAMEDLAAENSAIT-DKASKSSVPGSRKRTPSRKKMEADQSGAASSDDEPCPKKGKPKKN 133 Query: 613 EDIQDNIVSEESTGVIRKRR---RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 ++ + + KR+ R + + + + ++ I+ + + E Sbjct: 134 KEESSSKEGKGDKETKGKRKNGSPRENSGKGKNETAEEDKRRKKAQAESGIEATMSIIAE 193 Query: 670 PSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 ++ ++E E + ST + +++ + K+T Sbjct: 194 MAEDKGDEVVVVEPSQESSKEPSTKNTKETSTKNTKETSTKN---TKETSTQ 242 >gi|145522792|ref|XP_001447240.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124414740|emb|CAK79843.1| unnamed protein product [Paramecium tetraurelia] Length = 644 Score = 45.0 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 48/191 (25%), Gaps = 10/191 (5%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + + E I ++ +L E+ Q + Q + Sbjct: 358 KQAFKQIEILIDTKIELI--EKLKQAE--EERLKAEQEKQKAEEDARKEKQERQKAEKER 413 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVS 654 + +A+ + + E E ++R +RR + Sbjct: 414 QKAEQDAIKEKQERQKAEQDAIKEKQERQKAEEERQRTEEKRRAEENRWAEEKRRAEQDR 473 Query: 655 SIQNVIDDSFDMY--MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 Q DS + ++ I EN + S +E Sbjct: 474 QRQQTEIDSLNRQYKLQEEKIRMQQRNLEEQQTKMENQQKQMQQESKRNLEE---QQRRE 530 Query: 713 VKKTRWWKRRK 723 ++ + +R + Sbjct: 531 IENKQIQERER 541 >gi|218767823|ref|YP_002342335.1| IgA1 protease [Neisseria meningitidis Z2491] gi|121051831|emb|CAM08137.1| IgA1 protease [Neisseria meningitidis Z2491] Length = 1773 Score = 45.0 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521 + +I A + Q + A + R E + Sbjct: 986 QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1045 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 ++ ++ + E R + + V+A Sbjct: 1046 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1095 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640 K +E + T + +R R+RR P Sbjct: 1096 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1154 Query: 641 ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 A+ NV + E A E + Sbjct: 1155 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1214 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E+ + R RK Sbjct: 1215 AARRKAEAEEAKRQAAELAHRQEAERK 1241 >gi|315050570|ref|XP_003174659.1| DNA ligase [Arthroderma gypseum CBS 118893] gi|311339974|gb|EFQ99176.1| DNA ligase [Arthroderma gypseum CBS 118893] Length = 890 Score = 45.0 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 34/148 (22%), Gaps = 6/148 (4%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + V Q P K + PI + +I ES Sbjct: 41 SKNDETKDGDEESVDQAPQTP--RKQVGRAGSKRTPPPIDDGDVDGEILSGGEKSESVSP 98 Query: 628 IRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R++R+ R +D S + S + Sbjct: 99 VTSRQKRKETAAARDGEESDEQPVTKRRRRSPKSSPKKRSPGNGGRSKAAAKDSPSPKKL 158 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDP 711 E S S ++E + P Sbjct: 159 KSEPEPELSSAEENSASDIEEDDVDEQP 186 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 12/141 (8%), Positives = 29/141 (20%), Gaps = 3/141 (2%) Query: 555 GIELADKLFYIEKGSPVQAL---VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 +++ + D I + + S Sbjct: 44 DETKDGDEESVDQAPQTPRKQVGRAGSKRTPPPIDDGDVDGEILSGGEKSESVSPVTSRQ 103 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E + +RRRR + + G + + EP Sbjct: 104 KRKETAAARDGEESDEQPVTKRRRRSPKSSPKKRSPGNGGRSKAAAKDSPSPKKLKSEPE 163 Query: 672 DITNHNLLENGAHGFTENYDV 692 + + + ++ D Sbjct: 164 PELSSAEENSASDIEEDDVDE 184 >gi|134079331|emb|CAK96960.1| unnamed protein product [Aspergillus niger] Length = 1797 Score = 45.0 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 44/159 (27%), Gaps = 15/159 (9%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I + + A + S A + + + D + + Sbjct: 4 RITRSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPAR--------RDRSVDAPEQS 55 Query: 624 STGVIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + ++ +R+RR + PAT +S + D + Sbjct: 56 NPSSSPRKSKRQRRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPAS 115 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + +++ + P + + + +S + K Sbjct: 116 RRKSSRSGKVSQDNASAAQPSPRRQKKRPSRASPDTIMK 154 Score = 41.1 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 16/141 (11%) Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 S N + + RK RR R A + + S Sbjct: 7 RSAARVAADSLPSTGSGPSPANAAAGSAPNRKRKAPARRDRSVDAPEQSNPSSSPRKSKR 66 Query: 657 QNVIDDSFDMYMEPSDITN--------HNLLENGAHGFTENYDVSIPPVSTPE------- 701 Q S P+ + + + + PP S + Sbjct: 67 Q-RRATSPRAAQSPATTRRGTRNRPAMSQPGPSSHPAEDSSRNQASPPASRRKSSRSGKV 125 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 + + S++ P ++ + R Sbjct: 126 SQDNASAAQPSPRRQKKRPSR 146 >gi|194382890|dbj|BAG59001.1| unnamed protein product [Homo sapiens] Length = 1061 Score = 45.0 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 17/175 (9%), Positives = 38/175 (21%), Gaps = 21/175 (12%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 L + AP + + +P S Sbjct: 890 ADDNLKTP--------------SERQLTPLPPSAPPSADDNIKTPAERLRGLLPPSADDN 935 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYM 668 + ++E+ ++ +R+R P G V + + Sbjct: 936 LKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSP 995 Query: 669 EPSDITNHN--LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 EP + + + S P + S P ++ + Sbjct: 996 EPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1050 >gi|212645183|ref|NP_493400.2| hypothetical protein Y6B3B.1 [Caenorhabditis elegans] gi|189309795|emb|CAB04901.2| C. elegans protein Y6B3B.1, partially confirmed by transcript evidence [Caenorhabditis elegans] gi|189309810|emb|CAA21727.2| C. elegans protein Y6B3B.1, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1828 Score = 45.0 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 43/155 (27%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 +P + + D + + + + ++ D++ +++ + Sbjct: 741 APKNPVEHNLEAQNPTDPPILADPAPPIRIKRKYVRKMKVPAAVGDVKPTRRTQKRKMLE 800 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R T+ D S+ S P ++E+ Sbjct: 801 DRDRTSMEEVVAKTEKKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKR 860 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P +S S P K + W RRK Sbjct: 861 RKGRKLEASEDPRDQSGAPSGAPEPVKKKTWSRRK 895 Score = 38.8 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 52/190 (27%), Gaps = 13/190 (6%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-- 599 EA+ ++ I++ + V ++ K +E + Sbjct: 750 LEAQNPTDPPILADP---APPIRIKRKYVRKMKVPAAVGDVKPTRRTQKRKMLEDRDRTS 806 Query: 600 -DEALLPIPKSESLEDIQDNIVSEES----TGVIRKRRRRRRRRRPATD-HHDAGVVSDV 653 +E + K + E +D S E G ++RRR R + + Sbjct: 807 MEEVVAKTEKKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRRKGRKL 866 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--P 711 + ++ D S P + + E S ++ P Sbjct: 867 EASEDPRDQSGAPSGAPEPVKKKTWSRRKKVVDPSEMVPQMNTRRRKISERSEYPAELGP 926 Query: 712 IVKKTRWWKR 721 + ++ R Sbjct: 927 VRRRKRKRDP 936 >gi|308504467|ref|XP_003114417.1| hypothetical protein CRE_27170 [Caenorhabditis remanei] gi|308261802|gb|EFP05755.1| hypothetical protein CRE_27170 [Caenorhabditis remanei] Length = 1208 Score = 45.0 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 6/117 (5%) Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ++ ++N + T KRR +RRR + + ++ S V Q + Sbjct: 1060 QNNKENSPPLQGTSRTAKRRDQRRRAQVRKEKQESQNQSLVLQDQQKRRNRPSKKQRERQ 1119 Query: 673 ITNHNLLENGAHG------FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N + + + P + P VKK R+ Sbjct: 1120 RNRQNKEQEVDKKLANIILEPSTTETARPQTENRDSVVPGKRRKPQVKKDNQNSARR 1176 >gi|221506161|gb|EEE31796.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1109 Score = 45.0 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 1/148 (0%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + E+ +A N + + Q P+ K E+ E Sbjct: 929 HYASEREEENRAQSNDEKAPNREESRDRRKDETDNAEQRAEDAPVQKREADEGRDREAGE 988 Query: 622 EESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 G +R + + S + + + + + E Sbjct: 989 TRVKGEQEDNELQREGAKNDELPEEKRNDIQRESEARRSEREDEETLAKREEEDRLVQRE 1048 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSS 708 +E D + + Sbjct: 1049 EETLAKSEEEDRLVQREEEETLAKREEE 1076 >gi|237835733|ref|XP_002367164.1| hypothetical protein TGME49_048170 [Toxoplasma gondii ME49] gi|211964828|gb|EEB00024.1| hypothetical protein TGME49_048170 [Toxoplasma gondii ME49] Length = 1115 Score = 45.0 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 1/148 (0%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + E+ +A N + + Q P+ K E+ E Sbjct: 935 HYASEREEENRAQSNDEKAPNREESRDRRKDETDNAEQRAEDAPVQKREADEGRDREAGE 994 Query: 622 EESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 G +R + + S + + + + + E Sbjct: 995 TRVKGEQEDNELQREGAKNDELPEEKRNDIQRESEARRSEREDEETLAKREEEDRLVQRE 1054 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSS 708 +E D + + Sbjct: 1055 EETLAKSEEEDRLVQREEEETLAKREEE 1082 >gi|198476752|ref|XP_002132434.1| GA25185 [Drosophila pseudoobscura pseudoobscura] gi|198137836|gb|EDY69836.1| GA25185 [Drosophila pseudoobscura pseudoobscura] Length = 4986 Score = 45.0 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 10/153 (6%), Positives = 31/153 (20%), Gaps = 6/153 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ Q + K + + Q E + + +E Sbjct: 1002 EREKAHQKERHEREKRKQQEREEKEKERKAHHHQPEDKEKEKAHPERKTQTHHQEEKEKE 1061 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + + R+ + + + + + + + Sbjct: 1062 RKSHQEEKEKERK---AQQQEEKERDERKAKEEKERKAQEEREQKERDEKEQQRVQEQRE 1118 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E + D K+ Sbjct: 1119 QEKRE---REQREKEHREKEHRERDHREKEKEQ 1148 >gi|125718690|ref|YP_001035823.1| translation initiation factor IF-2 [Streptococcus sanguinis SK36] gi|166198937|sp|A3CQ18|IF2_STRSV RecName: Full=Translation initiation factor IF-2 gi|125498607|gb|ABN45273.1| Translation initiation factor IF-2, putative [Streptococcus sanguinis SK36] Length = 930 Score = 45.0 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 7/153 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 +P + V + E A P K+E+ ++ Sbjct: 58 APAEKPVAAQPSPQKTPAKEAAPVKAEPTEAKAAAQPEAKTETAAPVKRPQSRNFKAERE 117 Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + RR+++ R+P D + + D P+D N ++G Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNSNDRDRGNRPND-RRDNRGQDG 176 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + P+ + + K Sbjct: 177 RRNGQNHQGFNGQKRQQPQGPKIDFKARAAALK 209 >gi|332256960|ref|XP_003277585.1| PREDICTED: synemin [Nomascus leucogenys] Length = 1253 Score = 45.0 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 44/173 (25%), Gaps = 9/173 (5%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G ++N + + + + + + D V+ E Sbjct: 412 ENSYGKTVNSQTNVRTFSPTYGLLRN-------TEAQVKTFPDRPKAGDTREAPVYIPED 464 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRR--RRRRRRRPATDHHDAGVVSDVSSIQNVI 660 +S + ESTG + ++ + + + + + + Sbjct: 465 STIARESYWDRRDNVAAGASESTGSRERTVILGKKTEVKATREQERIRPETIRTKPEEKM 524 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 DS + E ++ L + + S + V Sbjct: 525 FDSKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577 >gi|237842343|ref|XP_002370469.1| hypothetical protein TGME49_077540 [Toxoplasma gondii ME49] gi|211968133|gb|EEB03329.1| hypothetical protein TGME49_077540 [Toxoplasma gondii ME49] gi|221502601|gb|EEE28321.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 2234 Score = 45.0 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 35/157 (22%), Gaps = 3/157 (1%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + +AP SE+ E+ E Sbjct: 257 VVRSLEASPRQTKTKETSEIEKAPDDALGKAAGRAQAEPAEKSGSETKENALTVQNEREF 316 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +R+R+R + + D+ EP + + Sbjct: 317 DEANGAKRKRKRTQEKEGASGGTRTAGESPRQG---RADGDVPEEPEQRRRQKRGKANSD 373 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 T + + E P +++ R Sbjct: 374 KTTRLKKPQLQRSTEKERTHRRDQRRPALRERDDASR 410 >gi|134076442|emb|CAK39668.1| unnamed protein product [Aspergillus niger] Length = 1043 Score = 45.0 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 14/157 (8%), Positives = 34/157 (21%), Gaps = 3/157 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE---ST 625 P L S+ + + + ++ E + E + Sbjct: 639 EPEAYLQPEARTEPKPSRPVRRGRGRKPLPENTDDAQASNEEIPAQAEQTEPETEVQPAQ 698 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +R R RP + + + + + + Sbjct: 699 QTEPPKPAKRGRGRPLSRKENDVTQAPDEEPTAQAEAVEPEPVPEPEEEPQPEPPAEPEP 758 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P + + P KK + + R Sbjct: 759 ARPAKLEEATAQDEPAEPAEPTEEAPPPKKRKPRQPR 795 >gi|332362940|gb|EGJ40729.1| translation initiation factor IF2 [Streptococcus sanguinis SK49] Length = 931 Score = 45.0 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 7/176 (3%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 EA G I + A +EK + Q + K + AP + E + Sbjct: 39 EADAGERIKSSFTKKAAAPQATVEKPAAAQ---PSPQKTPAKEAAPVKAEQTEAKVTAKP 95 Query: 603 LLPIPKSESLEDIQDN---IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + ++ Q E +RR+++ R+P D + Sbjct: 96 EAKVETAAPVKRPQSRNFKAEREARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRG 155 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 D P+D N ++G + + P+ + + K Sbjct: 156 NRKDRDRGNRPND-RRDNRGQDGRRNDQNHQGFNGQNRQQPQGPKIDFKARAAALK 210 >gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] Length = 717 Score = 45.0 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74 E ++ G IYL KV RVE AFV+ + G + E+ Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFVELFSGKDGLVHISEL 655 >gi|15598375|ref|NP_251869.1| hypothetical protein PA3179 [Pseudomonas aeruginosa PAO1] gi|107102709|ref|ZP_01366627.1| hypothetical protein PaerPA_01003775 [Pseudomonas aeruginosa PACS2] gi|116051168|ref|YP_790001.1| hypothetical protein PA14_23110 [Pseudomonas aeruginosa UCBPP-PA14] gi|218890629|ref|YP_002439493.1| putative pseudouridine synthase [Pseudomonas aeruginosa LESB58] gi|254236141|ref|ZP_04929464.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254241866|ref|ZP_04935188.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296388337|ref|ZP_06877812.1| putative pseudouridine synthase [Pseudomonas aeruginosa PAb1] gi|34098721|sp|Q9HZ55|RLUB_PSEAE RecName: Full=Ribosomal large subunit pseudouridine synthase B; AltName: Full=rRNA pseudouridylate synthase B; AltName: Full=rRNA-uridine isomerase B gi|9949297|gb|AAG06567.1|AE004742_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115586389|gb|ABJ12404.1| putative pseudouridine synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|126168072|gb|EAZ53583.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126195244|gb|EAZ59307.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218770852|emb|CAW26617.1| putative pseudouridine synthase [Pseudomonas aeruginosa LESB58] Length = 386 Score = 45.0 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 11/118 (9%), Positives = 18/118 (15%) Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + S R+R RR A Q + Sbjct: 265 TTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDGENAARRAPASRPARGPQPSAER 324 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 P + + P P P Sbjct: 325 KGREQGTPVAERPRESNRKPRPSKPRDERPASAPGDKPAARKPQVKRRPKPAGDGMRP 382 >gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus weihenstephanensis KBAB4] gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus weihenstephanensis KBAB4] gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] Length = 717 Score = 45.0 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74 E ++ G IYL KV RVE AFV+ + G + E+ Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFVELFSGKDGLVHISEL 655 >gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] Length = 732 Score = 45.0 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 27/110 (24%), Gaps = 8/110 (7%) Query: 39 KGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQ 97 G IY KV + P AFV+ + G L EI Y L K + + Sbjct: 630 VGEIYEGKVKSIMPFG---AFVEIMPGKDGLLHISEIDWKRY----ESMDGLFKVGDEVR 682 Query: 98 TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVS 147 V + P A + + Sbjct: 683 VKLLDVDKQGKLKLSRKALLPRPPKPQPEAQTPAAEGNGAPAEGDASKAE 732 >gi|296393509|ref|YP_003658393.1| hypothetical protein Srot_1089 [Segniliparus rotundus DSM 44985] gi|296180656|gb|ADG97562.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length = 298 Score = 44.6 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 32/126 (25%) Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + + + + E E + E + R R + Sbjct: 91 QKPEEKPSWATFDEDEDDEIPPPALADAEQVATVAPITRPRPSSAAKPGEQPKPEQTRQR 150 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + ++ +P+ A TE S PP + S ++ P Sbjct: 151 ATPTSRANAKPASAKPATSKPTATKPTSAKPKTEKPASSKPPARSKPAASKTTAKKPPAP 210 Query: 715 KTRWWK 720 K+ + Sbjct: 211 KSSTAR 216 >gi|258576711|ref|XP_002542537.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237902803|gb|EEP77204.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 815 Score = 44.6 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 27/126 (21%), Gaps = 16/126 (12%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ---------------DEALLPIPKSES 611 K P P + E + D P P + Sbjct: 302 KPQPEVRPEPASKPESKPEPKPDHKPEPEPRPEQKPQPPPEPKPEPKQDTPAPPQPSNTE 361 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + QD S+ RR+ RR+ + + + + + + Sbjct: 362 AKPAQDRQKSDWERAREEMRRKEEIRRK-MEEFRKKRAEDERRKQEEQERIAREEQQQRD 420 Query: 672 DITNHN 677 Sbjct: 421 KEAREK 426 >gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192] gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192] Length = 639 Score = 44.6 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618 + + G +A + K IE + + + E + Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RR + RR DA + S++ D + + N Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450 Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713 A + + P + + DP Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486 >gi|319410073|emb|CBY90407.1| IgA-specific serine endopeptidase (IgA protease) [Neisseria meningitidis WUE 2594] Length = 1811 Score = 44.6 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521 + +I A + Q + A + R E + Sbjct: 986 QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1045 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 ++ ++ + E R + + V+A Sbjct: 1046 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1095 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640 K +E + T + +R R+RR P Sbjct: 1096 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1154 Query: 641 ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 A+ NV + E A E + Sbjct: 1155 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1214 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E+ + R RK Sbjct: 1215 AARRKAEAEEAKRQAAELAHRQEAERK 1241 >gi|71651879|ref|XP_814607.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70879596|gb|EAN92756.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1288 Score = 44.6 bits (103), Expect = 0.054, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 45/155 (29%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + ++ + + + ++ A + + + ++ +++ Sbjct: 975 KRAEEEAARKQAEEEAARKQAEEAARKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEA 1034 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +++ R+ A + + ++ + +++ E E E Sbjct: 1035 ARKQAEEAARKRAEEEAARKQAEEEAARKQAEEEAARKRAEEEAARKQAEEEAARKQAEE 1094 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + V + E S + KK R+K Sbjct: 1095 EAARTRAEVQEEKAELSVKERRKLAKKKIERYRKK 1129 >gi|194740960|ref|XP_001952957.1| GF17457 [Drosophila ananassae] gi|190626016|gb|EDV41540.1| GF17457 [Drosophila ananassae] Length = 3045 Score = 44.6 bits (103), Expect = 0.055, Method: Composition-based stats. Identities = 17/180 (9%), Positives = 44/180 (24%), Gaps = 4/180 (2%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYI----EKGSPVQALVNTGHKVGSDSQAPS 589 + E + V + + + S K S+ + P Sbjct: 1053 ELEDRFNALERKMSVQKSSPAKTKKEPPDENVGSKDTSASKESDKTEKHVKKVSEEKDPK 1112 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 N + S++ I ++ + + + ++ + Sbjct: 1113 AAPNNASKEEKLPPKERNASDNESKIPSPDNPQKGSPSRKPSPDQSEKKECTKSNAADSE 1172 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 S + + + D L+ T+ + S P+ TP ++ Sbjct: 1173 ESSSTPERQKTVSTKKERHNEKDTKESQFLKKSDEESTKKSEASNEPIQTPRKSPPSTEE 1232 >gi|115375944|ref|ZP_01463192.1| hypothetical protein STIAU_4841 [Stigmatella aurantiaca DW4/3-1] gi|115367027|gb|EAU66014.1| hypothetical protein STIAU_4841 [Stigmatella aurantiaca DW4/3-1] Length = 431 Score = 44.6 bits (103), Expect = 0.055, Method: Composition-based stats. Identities = 11/151 (7%), Positives = 39/151 (25%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + +A K ++ + +++ + + ++ Sbjct: 176 QRQTEAEAKRQAEAKQREETARAQAEARKAAEDEEKRRQAEEAQAKRQAETEAKQRKQEE 235 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + RR + + ++ + + + E Sbjct: 236 ARAQAEARRTAEAEEKQRQKEEAEARRQAEVEAKQRKQEEARAQAEARRSAQAEETRRQQ 295 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 T + PP + +S+ + +KT Sbjct: 296 ETARVASAEPPAREEQGDSAAAPGISARRKT 326 >gi|195474867|ref|XP_002089711.1| GE22696 [Drosophila yakuba] gi|194175812|gb|EDW89423.1| GE22696 [Drosophila yakuba] Length = 1440 Score = 44.6 bits (103), Expect = 0.056, Method: Composition-based stats. Identities = 32/319 (10%), Positives = 84/319 (26%), Gaps = 39/319 (12%) Query: 434 KNNRSVEKKLKESLKKDRARVQVGAI--SNFGLLEMSRQRIRSSVLESTTKVCTYCKGAG 491 ++ ++ K + + + I + F E+ + + + + ++ TY Sbjct: 1121 QHYTCLKNLTKHYISSYTSETSIENIRGTKF---ELLLRGVGKQLPANIYELITY----- 1172 Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 I + + + L + + + A + V+ ++ I+ + Sbjct: 1173 -IEANTLDEEAQLHTKKRKVQAERAKVLRETRLIPKVIMVIEDFNKHIILLSKKTKSKNR 1231 Query: 552 VVIGIELADK-LFYIEKGS-PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + L F I+ + ++ + + + ++ +S Sbjct: 1232 LTDYLHLGTMRDFDIKSTDLRAAIERSISDGRNISTEDSNGEDQDQDENENVEEDDDNQS 1291 Query: 610 ES--------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA-------- 647 + +E S+ + +R+R R+ A Sbjct: 1292 TTYPEELEEQEDEYILIEKKGQRRRRASSSEAEDPQPKRKRGRKAAEKLEAKVQCEDEEE 1351 Query: 648 --GVVSDVSSIQNVIDDSFDMYME--PSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 +D++S N P N + T+ + E Sbjct: 1352 VEEEQNDITSKLNRNRKVEPKTKGSVPKATKNPEEQPSHDSRTTKKSKALAEKKTQNPTE 1411 Query: 704 SSNSSSDPIVKKTRWWKRR 722 KK RR Sbjct: 1412 DLCIREVHAEKKKPQPSRR 1430 >gi|110631441|gb|ABG81066.1| immunoglobulin A1 protease precursor [Neisseria meningitidis] Length = 1818 Score = 44.6 bits (103), Expect = 0.056, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 54/267 (20%), Gaps = 20/267 (7%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY----TAHNIIV 521 + +I A + Q + A + R E + Sbjct: 997 QTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAEAERKSAELAKQKAEAE 1056 Query: 522 HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 ++ ++ + E R + + V+A Sbjct: 1057 REARELATRQKAEQERSSAELARRHEK----------EREAAELSAKQKVEAEREAQALA 1106 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP- 640 K +E + T + +R R+RR P Sbjct: 1107 VRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQ 1165 Query: 641 ----ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 A+ NV + E A E + Sbjct: 1166 DYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEERKAAELLAKQRAEAEREAQAL 1225 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E+ + R RK Sbjct: 1226 AARRKAEAEEAKRQAAELAHRQEAERK 1252 >gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] Length = 639 Score = 44.6 bits (103), Expect = 0.056, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618 + + G +A + K IE + + + E + Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RR + RR DA + S++ D + + N Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450 Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713 A + + P + + DP Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486 >gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] Length = 639 Score = 44.6 bits (103), Expect = 0.056, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618 + + G +A + K IE + + + E + Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RR + RR DA + S++ D + + N Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450 Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713 A + + P + + DP Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486 >gi|15829205|ref|NP_326565.1| lipoprotein [Mycoplasma pulmonis UAB CTIP] gi|14090149|emb|CAC13907.1| VLPE-LIKE (Mycoplasma hyorhinis) LIPOPROTEIN [Mycoplasma pulmonis] Length = 682 Score = 44.6 bits (103), Expect = 0.056, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 35/170 (20%), Gaps = 3/170 (1%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 L + N + + + S D Q Sbjct: 46 SLTPSNSEKTNNQDTGKINNNSPTSSKPNIGNIEQEGSQTPNNPNVEEQKSDSPKAPDTQ 105 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 D+ +E + + + + D E + Sbjct: 106 DSGKKQEEELKSPSSPDAGQSQPESPQNPSTPNSEDKDQKPEEPQAPDKSKDENQMLGES 165 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSN---SSSDPIVKKTRWWKRRK 723 + T+ P P N +S K +WW++ + Sbjct: 166 QTPDTPNVEDTQPEAPQSPNPEEPNNSEENMDSNSDKEKESKPKWWEKSE 215 >gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa 39016] gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa UCBPP-PA14] gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa 39016] Length = 639 Score = 44.6 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618 + + G +A + K IE + + + E + Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RR + RR DA + S++ D + + N Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450 Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713 A + + P + + DP Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486 >gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1] Length = 639 Score = 44.6 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 38/156 (24%), Gaps = 3/156 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618 + + G +A + K IE + + + E + Sbjct: 331 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 390 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RR + RR DA + S++ D + + N Sbjct: 391 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 450 Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713 A + + P + + DP Sbjct: 451 ENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486 >gi|255727280|ref|XP_002548566.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240134490|gb|EER34045.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 1078 Score = 44.6 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 19/195 (9%), Positives = 54/195 (27%), Gaps = 23/195 (11%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 E + + V + +EK + + + Q + +E ++ Sbjct: 885 IEEKEPKVVEAVPESTPKVQEADVEKEVQQEPVKQPKVEQPKAEQPKAEQPKVEQPKAEQ 944 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRR----------------RRRRRRPATDHH 645 PK+E + Q + ++ + + + + P + Sbjct: 945 PKAEQPKAEQPKAEQPKAEQPKVEQPKAEQPKVEPVSQKKVVEEAPVVQEKSKEPIPEPS 1004 Query: 646 DAGV-----VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 V S Q + ++ + +E + + V V+ Sbjct: 1005 TVQTPIIEQVKPSSVEQPQQSTTSKSEVQQESSNTQSSVE--TPASSTSKIVRTKKVTRT 1062 Query: 701 EMESSNSSSDPIVKK 715 ++S +++ P + Sbjct: 1063 IIKSKPTNNAPEKDE 1077 >gi|221485304|gb|EEE23585.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 1124 Score = 44.6 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 1/148 (0%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + E+ +A N + + Q P+ K E+ E Sbjct: 912 HYASEREEENRAQSNDEKAPNREESRDRRKDETDNAEQRAEDAPVQKREADEGRDREAGE 971 Query: 622 EESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 G +R + + S + + + + + E Sbjct: 972 TRVKGEQEDNELQREGAKNDELPEEKRNDIQRESEARRSEREDEETLAKREEEDRLVQRE 1031 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSS 708 +E D + + Sbjct: 1032 EETLAKSEEEDRLVQREEEETLAKREEE 1059 Score = 44.6 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 42/161 (26%), Gaps = 6/161 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEES 624 ++ + + + + + +E E +++ + EE Sbjct: 938 DRRKDETDNAEQRAEDAPVQKREADEGRDREAGETRVKGEQEDNELQREGAKNDELPEEK 997 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 I++ RR R D + + +++ E + E A Sbjct: 998 RNDIQRESEARRSERE--DEETLAKREEEDRLVQREEETLAKSEEEDRLVQREEEETLAK 1055 Query: 685 GFTENYDVSIPPV---STPEMESSNSSSDPIVKKTRWWKRR 722 E+ S E +D K +RR Sbjct: 1056 REEEDRLAPSRAAREGSEETTEGIRGYNDEREKSRETEQRR 1096 >gi|302916995|ref|XP_003052308.1| hypothetical protein NECHADRAFT_79351 [Nectria haematococca mpVI 77-13-4] gi|256733247|gb|EEU46595.1| hypothetical protein NECHADRAFT_79351 [Nectria haematococca mpVI 77-13-4] Length = 1070 Score = 44.6 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 1/230 (0%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 +R + R+ + + + D +Y K T+ + E + S+ Sbjct: 719 RLRITGKRLDHLERAFRKEEAKKLHEDHAKQIEEDRAIY-EKVKAQTLKDAEQKHKESVE 777 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + + + S + + K D++ + + K E Sbjct: 778 LKHRLSRLVPQYESFRDSLHERRRDEFEKRRRDAERELEKQISIRKKEVRDRRLREKRER 837 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E ++ +EE R+ R R R E + Sbjct: 838 EEKERELREAEEKAAREREERELREEARKEELAKLKEQREKERQEMLEKAALQQRREEEA 897 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E G F+ + + E S+ P+ +W +R Sbjct: 898 LARRKAEKERGPPTFSRGPERAERAERVERAEPSDGRRPPVFGAGKWRER 947 >gi|115933324|ref|XP_781520.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115963864|ref|XP_001188428.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 1967 Score = 44.6 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 13/177 (7%) Query: 552 VVIGIELADKLFYIEKGSPVQ---ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 V E+ + V+T +KV S + V + ++ P Sbjct: 1201 VRENKSTDSPNMREERNRSSESKQRPVSTPNKVESPQLNALISPSSIAVSSNSSVKDSP- 1259 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + + +D ++ ++T R + P D V Q + Sbjct: 1260 ASNTKDERERSKPNKTTERSVDDVARQLYPIKPIPVKKAEDKQVKQAKEPKQ----TAPS 1315 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 PS E + G E+ S P S P + + K+ + RR Sbjct: 1316 TDRAPSKTEKAPGTEKKSKGSMESNPSSTP--SNPSDPNPGYVRSKMRKEKQMGPRR 1370 >gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str. Malish 7] gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str. Malish 7] Length = 749 Score = 44.6 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 32/176 (18%) Query: 9 ASHVEETRVVVLRDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGF 68 AS ++ +V + ++++ + E E G I+ V +V S AF++Y GN+ GF Sbjct: 600 ASDRDKLKVAL---DKIKAIVVEPE-----IGEIFNGTVVKVLDS--GAFINYVGNKDGF 649 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + E+ + E V+ + GD+ + Sbjct: 650 VHISEV---------------------SGERIETVSSVLKQGDIVKVKLIGFDNKGKAKL 688 Query: 129 FSQETEEESIISANNDVVS-NVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQ 183 + +++ + + N + PE K++ ++ ++ + Sbjct: 689 TIKNADKDKSSNNTKPKTNVNNTNKDNSEPEQRRDSSKKRAWNEDNNAETAEVITE 744 >gi|325511407|sp|A6NJU9|YP038_HUMAN RecName: Full=Putative NPIP-like protein LOC613037 Length = 1138 Score = 44.6 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 38/153 (24%), Gaps = 7/153 (4%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + AP + + P+P S + ++E+ ++ +R+ Sbjct: 975 SERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQ 1034 Query: 636 RRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLENGAHGFTE 688 R P G V + + +P + Sbjct: 1035 RAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKRRRVGDVEPSRKPKRRRAA 1094 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 1095 DVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 1127 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 18/175 (10%) Query: 554 IGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 L E+ + T + PS D N++ Sbjct: 967 ADDNLKTPS---ERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEA 1023 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 K + + + R+ R+ +RR A D + + +V Sbjct: 1024 EAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKRRRVGDVE 1083 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 +D+ + + + S P + SS +P ++ Sbjct: 1084 PSRKPKRRRAADVEPSSPE--PKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRR 1136 >gi|194766405|ref|XP_001965315.1| GF24504 [Drosophila ananassae] gi|190617925|gb|EDV33449.1| GF24504 [Drosophila ananassae] Length = 3217 Score = 44.6 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 10/149 (6%) Query: 570 PVQALVNTGHKVGSDSQAPSYDK-------NIECVWQDEALLPIPKSESLEDIQDNIVSE 622 T VG D ++P YD + E +S+ D + S Sbjct: 1380 ADGEAETTSAVVGVDGESPDYDDIPVSKIPRSANEEEKEPEAGDETVDSVPDSAGDAAST 1439 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 S ++ R RR + + A S + + + P + L+ Sbjct: 1440 PSRRDRKRSTARSRRNANSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRT 1499 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDP 711 S S N+ Sbjct: 1500 PPPS---PPPDSELDSNKRRSSRNTQRKK 1525 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 46/161 (28%), Gaps = 10/161 (6%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I + + + DS S + + +S Sbjct: 1396 ESPDYDDIPVSKIPRSANEEEKEPEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1455 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + ++ + + G + + ++RR R + D + + DS + Sbjct: 1456 ANSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSELDSNKR 1515 Query: 671 SDITNHNLLE--NGAHGFTENYDVSIPPVSTPEMESSNSSS 709 N + + + + S+ S + E +S++ Sbjct: 1516 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKEKKSSAN 1556 >gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638] gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638] Length = 711 Score = 44.6 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 23/112 (20%) Query: 7 IDASHVEETRVVVLRDNRVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG 63 I A+ E+ + + R+EE+ + E G IY KVTR+ AFV GG Sbjct: 597 IAATDGEKAKFAI---RRIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGG 643 Query: 64 NRHGFLPFLEIH-------PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 + G + +I DY Q+ +L+ + Sbjct: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 695 >gi|85085472|ref|XP_957517.1| hypothetical protein NCU04440 [Neurospora crassa OR74A] gi|28918609|gb|EAA28281.1| predicted protein [Neurospora crassa OR74A] gi|40882180|emb|CAF06006.1| hypothetical protein G21B4.210 [Neurospora crassa] Length = 1019 Score = 44.6 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 14/143 (9%), Positives = 31/143 (21%), Gaps = 1/143 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ +A + Q E + E + + + Q + E Sbjct: 214 EREKRDKAEREKKEQAAKAQQEAKVKAAREAQERAEREVKKRARDEEDQKQAELERAERN 273 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + R RR+ H Q + S + + Sbjct: 274 ARLNRERSEDARRQAEQKHAAEAARKKEEQRQ-AREASEAEMASLEEAKRQAMRPPPPPS 332 Query: 686 FTENYDVSIPPVSTPEMESSNSS 708 + + +S Sbjct: 333 KQLLSTPPTSRTRELVVPDTGNS 355 >gi|325116375|emb|CBZ51928.1| putative KH domain-containing protein [Neospora caninum Liverpool] Length = 1073 Score = 44.6 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 36/157 (22%), Gaps = 1/157 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + DK E + + + +D Sbjct: 36 EEAKEREKDNREREGGDGKDRRRDTDKERERGRGRGSDRGDRGNAGRDGSRDGEKDRRDD 95 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +++ RR + S S D +H + H Sbjct: 96 KEKERKKSRRDESEESDRESTGRSRSKDRSSPRHRRDKRKREETKEREASHKNETSRRHH 155 Query: 686 FTENYDV-SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + D + S + SS + R K+ Sbjct: 156 SACSADSHASINKSRERSQERKSSKHRHSSRDRRAKK 192 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 9/114 (7%) Query: 614 DIQDNIVSEESTGVIRKRRRRR----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 ++ EE+ + R R + RR TD S + + D + Sbjct: 28 RVRTAKGREEAKEREKDNREREGGDGKDRRRDTDKERERGRGRGSDRGDRGNAGRDGSRD 87 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + S E + S D + R KR++ Sbjct: 88 GEKDRRDDKEKERKKSR-----RDESEESDRESTGRSRSKDRSSPRHRRDKRKR 136 >gi|229824770|ref|ZP_04450839.1| hypothetical protein GCWU000182_00119 [Abiotrophia defectiva ATCC 49176] gi|229791099|gb|EEP27213.1| hypothetical protein GCWU000182_00119 [Abiotrophia defectiva ATCC 49176] Length = 984 Score = 44.6 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 14/235 (5%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS-INVV 553 S + A L+ E + I + + E V V Sbjct: 104 SAEAEAKKALQKEESGAKEAKVKEIKSEEAKMAEAKSAKNESTAV---EKETKVKEPKVK 160 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 A + ++ P + +V+ V + A ++ + Q AL +S Sbjct: 161 ESQGEAKEQKAVQAKEPEEKVVSESPSVSPEEAAIAF--ARKKASQAAALNSDKPGKSNA 218 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ-------NVIDDSFDM 666 N ++ R + +R + + D + N Sbjct: 219 SGSGNKAQKQGDRKRADRPQGQRDSSKEGNRENRSRQGDGQNKNEGFRGGRNSERPQGQR 278 Query: 667 YMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +P + N + GA G + N + + +SS + I+ KT Sbjct: 279 GDKPFNKDGNSSNDRRGAAGGSRNGNNAGARGGQSRGQSSAGGEERIITKTGNRD 333 >gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697] gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697] Length = 770 Score = 44.6 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 12/102 (11%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98 G +Y KV + P AFV++ + G L EI D + L Sbjct: 679 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 726 Query: 99 DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIIS 140 + + + + D +V QE E+ + Sbjct: 727 EGDEIDVKLLDIDPKTGKFKLSRKVLLPRPERQERPEKKENN 768 >gi|322491326|emb|CBZ26594.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 4822 Score = 44.6 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 42/135 (31%), Gaps = 5/135 (3%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+ + G ++A + + + + + ED+ ++ + + Sbjct: 4354 DVEEFDFDEDGDREGIAAAEQTEAKPTETDAYEGEESHSDASSDEDGVGEDVDESADAPQ 4413 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 T RR+RR+ + T+ + S + + + + + ++ + Sbjct: 4414 DT-----RRKRRQNKDELTELEEREAAEATSRKKRSKEKVRTTAGDEDASASEDQEDDDS 4468 Query: 684 HGFTENYDVSIPPVS 698 + + Sbjct: 4469 TKKDDQDAAAEANAK 4483 Score = 41.5 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 38/160 (23%), Gaps = 16/160 (10%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 ++ + +D + + + E + ++E+ D Sbjct: 4326 NQHVEVTDEKDEPKAEKPPKTDQADDPEDVEEFDFDEDGDREGIAAAEQTEAKPTETDAY 4385 Query: 620 VSEES----------------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 EES + RR+RR+ + + + Sbjct: 4386 EGEESHSDASSDEDGVGEDVDESADAPQDTRRKRRQNKDELTELEEREAAEATSRKKRSK 4445 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 + D + T+ D + ++E Sbjct: 4446 EKVRTTAGDEDASASEDQEDDDSTKKDDQDAAAEANAKLE 4485 >gi|198474329|ref|XP_001356647.2| GA16382 [Drosophila pseudoobscura pseudoobscura] gi|198138344|gb|EAL33712.2| GA16382 [Drosophila pseudoobscura pseudoobscura] Length = 1654 Score = 44.6 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 15/242 (6%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+ R+R S T + + + A R+ E Q Sbjct: 1394 EVDREREHEQRHSSLTSSHRSSRETNNRPKERTEAELNQRARERAQRQEE---------L 1444 Query: 526 DVVLYLLNQKRATIVEYEARFG----VSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 + NQKR E R ++++V + ++ + Sbjct: 1445 EAAAAQRNQKREKTSRREERHRHEGLETVDLVASNS--TEHRQFDEYEGRHRDRDLSSVS 1502 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + + + +++E + ++ S + +S R + + R + + + Sbjct: 1503 NESNGSMQHRRSLEAIEYEKDSKRRKLESSSSSSKKVEELVDSVKKARLKTKERNKDKLS 1562 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + DA + ++ ++S ++ + + + + + Sbjct: 1563 DEERDARKDRKLGRKRDRAEESNNIEHKRRREAQNGDDDLRERERHRDKSPRERSHEKFD 1622 Query: 702 ME 703 E Sbjct: 1623 RE 1624 >gi|194768250|ref|XP_001966226.1| GF19561 [Drosophila ananassae] gi|190623111|gb|EDV38635.1| GF19561 [Drosophila ananassae] Length = 1975 Score = 44.6 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 13/162 (8%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K S + + + P EA + ++ S++ Sbjct: 923 KDSSSEGKEQKHESRPTRGRTPPPRSQKIEASSTEASHQGEFQSQESGLPASLASQKKDE 982 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSD------------VSSIQNVIDDSFDMYMEPSDIT 674 R++ RR R P+++ +S+ + + N P Sbjct: 983 KTRRKPRRDRDTDPSSESECHKRLSNDACYSRCGYLPRSAYLINDFHQLMRRVARPRPSA 1042 Query: 675 NHNLLENGAHGFTENYDVSIPP-VSTPEMESSNSSSDPIVKK 715 + + PP S PE + + P V+K Sbjct: 1043 ERLQRKAKRPNREKAVPERAPPKESPPESQKPGIKAKPKVRK 1084 >gi|119485232|ref|ZP_01619617.1| Hemolysin-type calcium-binding toxin [Lyngbya sp. PCC 8106] gi|119457460|gb|EAW38585.1| Hemolysin-type calcium-binding toxin [Lyngbya sp. PCC 8106] Length = 681 Score = 44.6 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 12/168 (7%), Positives = 31/168 (18%), Gaps = 11/168 (6%) Query: 554 IGIELADKLFYI-----------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 ++ P ++ P +DE Sbjct: 84 SDPQIIQPESKSGSNSDVDVPPESNTEPETRTEVEPESPDENTPPPQSQTPQSPNLEDEQ 143 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P+ +++ +++ + R Sbjct: 144 DSPLNPQPEIDETEEDSPPQAEVEPPESEPRSPVESSEDESKETPASSDPQIIQPESKSG 203 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 S P + + + + P TP+ + D Sbjct: 204 SNSNVEIPPESNTEPETRTEVEPESPDENTPPPQSQTPQSPNLEDEQD 251 Score = 41.5 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 34/171 (19%), Gaps = 14/171 (8%) Query: 554 IGIELADKLFYI-----------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 ++ P ++ P +DE Sbjct: 191 SDPQIIQPESKSGSNSNVEIPPESNTEPETRTEVEPESPDENTPPPQSQTPQSPNLEDEQ 250 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P+ +++ +++ + R ++ + + Sbjct: 251 DSPLNPQPEIDETEEDSPPQAEVEPPESEPRTPV---EPSEDEPKETPTTTDPQTTPEPE 307 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S D+ + E E P+ +S D Sbjct: 308 SKSGSDSNVDVPPQSNTEPETRPEVEPEPPDDTTPDNPQPTQPDSQPDSQP 358 >gi|198450551|ref|XP_001358032.2| GA19664 [Drosophila pseudoobscura pseudoobscura] gi|198131086|gb|EAL27169.2| GA19664 [Drosophila pseudoobscura pseudoobscura] Length = 2182 Score = 44.6 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 9/209 (4%) Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA--DKLFYIEKG 568 Q ++ T ++ L + R EAR + I +++ + + ++ Sbjct: 1526 AKQVEPKQLVAMTPEELASQELAKWRQE----EARHQLEIIEKSELDMLSCTQNYVVKTH 1581 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + D ++ K+ E+ E + + ++E Sbjct: 1582 KGEEVIATKADVTLPDVESILDKKHTSQNSDPESASKDISLEHSSSKEKSGSTKEKRHKS 1641 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY---MEPSDITNHNLLENGAHG 685 KR R+R R + + N ++ + E + + + Sbjct: 1642 HKRHHPRKRSRSRSSSQTRSLEKRHRRHHNDVETGGERKHRHREKQHSKDRDERISSPAK 1701 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVK 714 E D S P E + +S+ + K Sbjct: 1702 KREENDRSFLPKIVTEKKPEEASASALAK 1730 >gi|297297277|ref|XP_001108469.2| PREDICTED: synemin [Macaca mulatta] Length = 1253 Score = 44.6 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 14/171 (8%), Positives = 46/171 (26%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G ++N + + + + + Q D++ + + E+ Sbjct: 412 ENTYGKTVNSSTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYRAEDSTVARES 471 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E + + +K + R + + + + D Sbjct: 472 YRDRRDNVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIR-----TKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + + Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMREKAKEKDSPKEKSVQEREI 577 >gi|325133785|gb|EGC56441.1| IgA-specific serine endopeptidase [Neisseria meningitidis M13399] Length = 1822 Score = 44.6 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%) Query: 494 RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 + Q + A + R E + ++ ++ + E R Sbjct: 1029 KRQQAKAEQVKRQQAEAERKSAKLAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1087 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + V+A K + Sbjct: 1088 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1138 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664 E + T + +R R+RR P A+ NV Sbjct: 1139 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1197 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E A E + + + E+ + R RK Sbjct: 1198 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1256 >gi|254804584|ref|YP_003082805.1| IgA-specific serine endopeptidase [Neisseria meningitidis alpha14] gi|254668126|emb|CBA04715.1| IgA-specific serine endopeptidase [Neisseria meningitidis alpha14] Length = 1832 Score = 44.6 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%) Query: 494 RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 + Q + A + R E + ++ ++ + E R Sbjct: 1030 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1088 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + V+A K + Sbjct: 1089 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1139 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664 E + T + +R R+RR P A+ NV Sbjct: 1140 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1198 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E A E + + + E+ + R RK Sbjct: 1199 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1257 >gi|325143912|gb|EGC66222.1| IgA-specific serine endopeptidase [Neisseria meningitidis M01-240013] gi|325206456|gb|ADZ01909.1| IgA-specific serine endopeptidase [Neisseria meningitidis M04-240196] Length = 1786 Score = 44.6 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%) Query: 494 RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 + Q + A + R E + ++ ++ + E R Sbjct: 1019 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1077 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + V+A K + Sbjct: 1078 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1128 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664 E + T + +R R+RR P A+ NV Sbjct: 1129 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1187 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E A E + + + E+ + R RK Sbjct: 1188 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1246 >gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC 43380] gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC 43380] Length = 707 Score = 44.6 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 20/91 (21%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 611 RIEEITAEIE-------VGRIYAGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVA 104 DY Q+ +++ + Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691 >gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] Length = 717 Score = 44.6 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74 E ++ G IYL KV RVE AFV+ + G + E+ Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFVELFSGKDGLVHISEL 655 >gi|310123536|ref|XP_003118758.1| PREDICTED: nuclear pore complex-interacting protein-like 3-like isoform 2 [Homo sapiens] Length = 852 Score = 44.6 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 4/138 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP+ + + P+P S + ++E+ Sbjct: 711 DDNLKTPSERQLTPLPPSAPTSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 770 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ +R+R P G V + + +E Sbjct: 771 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 830 Query: 685 GFTENYDVSIPPVSTPEM 702 P P+ Sbjct: 831 PKRRRAADVEPSSPEPKR 848 >gi|302675867|ref|XP_003027617.1| hypothetical protein SCHCODRAFT_258597 [Schizophyllum commune H4-8] gi|300101304|gb|EFI92714.1| hypothetical protein SCHCODRAFT_258597 [Schizophyllum commune H4-8] Length = 447 Score = 44.2 bits (102), Expect = 0.070, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 3/146 (2%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 IE+ + + A + + S + V +DE P+ + +E+ Sbjct: 305 DIERYADLVAEARSLRREISKIAEDYDRDKWDDVVEDERGRPVNGGKKVEEESGVAEGRA 364 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 R + R ++ D + ++ + D + I +L + Sbjct: 365 MDKAERLDKEERLDKKERLDKEE---RRELDKEERRELDKGEGDRRGRRINKEDLKDAST 421 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSS 709 +E+ + + S+ Sbjct: 422 EVKSESRRKVDEVTGEEDRKDREGSA 447 >gi|254706879|ref|ZP_05168707.1| hypothetical protein BpinM_07811 [Brucella pinnipedialis M163/99/10] Length = 203 Score = 44.2 bits (102), Expect = 0.071, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 2/172 (1%) Query: 553 VIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E + ++ + +V T V + + ++ E + K+E Sbjct: 29 IPDPEFVGYTPVLPVKAEESIGEVVETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTE 88 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +EE ++ R R++ +A ++ + + +P Sbjct: 89 EAAEAVITAEAEEKPEKPARKTRTRKKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKP 148 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P ST + +S+ S D K++ WW+++ Sbjct: 149 VVEAEDVAEVKETVAAETQVETIAEPKSTEPVVTSSESEDRKPKRSGWWQKK 200 >gi|63100354|gb|AAH94882.1| LOC23117 protein [Homo sapiens] Length = 739 Score = 44.2 bits (102), Expect = 0.071, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 569 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 628 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 629 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 688 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 689 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 728 Score = 42.3 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 593 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 652 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 653 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 712 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 713 EPSRKPKRRRAADVEPSLPEPKR 735 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 10/150 (6%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630 + T + PS D N++ K + + + R+ Sbjct: 592 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRV 651 Query: 631 ---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R+ +RR A D V S +E + Sbjct: 652 GDVEPSRKPKRRRAAD------VEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPK 705 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + P P+ + + + R Sbjct: 706 RRRVGDVEPSRKPKRRRAADVEPSLPEPKR 735 >gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7] gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7] Length = 702 Score = 44.2 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74 E K G +Y KV R+E AFV+ + G L EI Sbjct: 616 IEELTKDIEVGKVYSGKVKRIEKFG---AFVEIAKGKDGLLHISEI 658 >gi|145607531|ref|XP_361848.2| hypothetical protein [Magnaporthe oryzae 70-15] gi|145015060|gb|EDJ99628.1| predicted protein [Magnaporthe oryzae 70-15] Length = 671 Score = 44.2 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 38/145 (26%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++ +P + +V D + + P E + Sbjct: 29 DLQPSAPPPKAASRRKRVALKRSETVADHSESFEDEIRVGTKRPAVEPEALADLTFPPQS 88 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 S + RR R R+ + D ++ D N + + + GA Sbjct: 89 SPAAKKPRRGRPRKLVRSNDESLVILIEDKPPAGNPTAAQAARAGKRRRTRSAKDTDEGA 148 Query: 684 HGFTENYDVSIPPVSTPEMESSNSS 708 + PV P +S+ Sbjct: 149 GAAQRDSPEPGNPVPQPASSKEDSN 173 >gi|302413255|ref|XP_003004460.1| cupin domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261357036|gb|EEY19464.1| cupin domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 653 Score = 44.2 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 13/153 (8%), Positives = 35/153 (22%), Gaps = 2/153 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + + P+ + + DE ++ +++ + S+ Sbjct: 237 KAKSTAPSKGKAREEHRAIELPAIEGATDESEDDEPIVRGKAAQNKAKQKQKETEPSSSQ 296 Query: 627 VIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++RR R A + + P+ N + Sbjct: 297 TSKRRRSARGSLIGDVTDLVESAPEHEPADAPSPKRQRTEAKPGRPAGRPPKNTNKTKEP 356 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + S+ + R Sbjct: 357 EPAKKTAAPKAGRPAKDDAPEAPSAAKKRGRPR 389 >gi|212636927|ref|YP_002313452.1| band 7 protein [Shewanella piezotolerans WP3] gi|212558411|gb|ACJ30865.1| Band 7 protein [Shewanella piezotolerans WP3] Length = 592 Score = 44.2 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 18/182 (9%), Positives = 45/182 (24%), Gaps = 1/182 (0%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 ++ +KR + E + I +E + IEK LV ++ + Sbjct: 217 IIEEKRKETNDIEQENRIKIE-QRNLEAEKQSLEIEKTEEEARLVQQQALEFKRAEQKAE 275 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + E E + + +++ ++R+ + R Sbjct: 276 ILKQQEQKTREEREAEIAKERAIETAEIEKTKDIETREIEKRKAIEQSRIQQQRDIEVAE 335 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 D + + +E T E+ + ++ Sbjct: 336 QDKQIAVAAKSEEESAARAQAADAEKLKVEKEEAVITTRQVAEANRRKEIEVIDARKEAE 395 Query: 711 PI 712 Sbjct: 396 RE 397 >gi|301063495|ref|ZP_07204027.1| translation initiation factor IF-2 [delta proteobacterium NaphS2] gi|300442434|gb|EFK06667.1| translation initiation factor IF-2 [delta proteobacterium NaphS2] Length = 958 Score = 44.2 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 40/165 (24%), Gaps = 5/165 (3%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 F EK ++ ++ + E + P SE + Sbjct: 154 PEFS-EKAPLEESKAPLETAPAPEAPEQPVAEPPEVTEEKPPTEKSPVSEKPPQEEAPPQ 212 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E+ +K + + + I + ++ + + Sbjct: 213 EMEAAPRKKKTPGAEKPAKVKGKKGKKRKSEKPAKIISPPEEGPLKNLLAKEAVKKQAKP 272 Query: 681 NG---AHGFTENYDV-SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 G E + P+ +E + P +K W K Sbjct: 273 KAPMPKRGVPEKASKIPVEPLPPKVLEPQPDEAKPSKRKKGWKKE 317 >gi|15676598|ref|NP_273742.1| IgA-specific serine endopeptidase [Neisseria meningitidis MC58] gi|7225928|gb|AAF41117.1| IgA-specific serine endopeptidase [Neisseria meningitidis MC58] gi|325139921|gb|EGC62451.1| IgA-specific serine endopeptidase [Neisseria meningitidis CU385] Length = 1815 Score = 44.2 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%) Query: 494 RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 + Q + A + R E + ++ ++ + E R Sbjct: 1018 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1076 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + V+A K + Sbjct: 1077 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1127 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664 E + T + +R R+RR P A+ NV Sbjct: 1128 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1186 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E A E + + + E+ + R RK Sbjct: 1187 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1245 >gi|293609863|ref|ZP_06692165.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828315|gb|EFF86678.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 473 Score = 44.2 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 15/206 (7%), Positives = 40/206 (19%), Gaps = 5/206 (2%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 H QKR +A +L + E Sbjct: 142 QKQQAEAKHQAEAKAKSEAEQKRKAEQNAKAAEDAKRKAEADAKLKREAQKAENAKLQAQ 201 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + D + + + + ++ + Sbjct: 202 QEAKRKAEAEAKAKQQKANDDAKRKADADAKAKQQKANDDAKRKADADAKAKQQKADEAK 261 Query: 634 RR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R+ R ++ + +D + Q +D E ++ Sbjct: 262 RKAEADARAKQQKAEEAKRKAEADAKAKQQKANDEAKRKAEADAKAKQQKADDAKRKAEA 321 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714 + + ++ + K Sbjct: 322 DAKAKQKAADDAKRKAEADAKAKQQK 347 >gi|161869642|ref|YP_001598809.1| IgA-specific serine endopeptidase [Neisseria meningitidis 053442] gi|161595195|gb|ABX72855.1| IgA-specific serine endopeptidase [Neisseria meningitidis 053442] Length = 1787 Score = 44.2 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%) Query: 494 RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 + Q + A + R E + ++ ++ + E R Sbjct: 990 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1048 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + V+A K + Sbjct: 1049 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1099 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664 E + T + +R R+RR P A+ NV Sbjct: 1100 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1158 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E A E + + + E+ + R RK Sbjct: 1159 QAELARRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1217 >gi|156047715|ref|XP_001589825.1| hypothetical protein SS1G_09547 [Sclerotinia sclerotiorum 1980] gi|154693942|gb|EDN93680.1| hypothetical protein SS1G_09547 [Sclerotinia sclerotiorum 1980 UF-70] Length = 859 Score = 44.2 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 6/159 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ SP + + S KN D +P +ES Sbjct: 83 ERVSPS-KDRRRRQSGYATEDSSSPSKNRRRREGDYDEIPGSPRRERRRRDHGYTDDESG 141 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + RRRR R TD D + D I+ +NG Sbjct: 142 TPNKDRRRRER---GYTDDESGYPGEDRKKREREYSDYETAAETALRISKQRRKQNGIPE 198 Query: 686 FTENYDVSIPPVSTPEMESSNSSS--DPIVKKTRWWKRR 722 +N P + +++ + + K+ + KRR Sbjct: 199 PKQNAPRKAQPTLKIPNKFTDNEAVYEKPRKEPKTKKRR 237 >gi|260173562|ref|ZP_05759974.1| transcription termination factor Rho [Bacteroides sp. D2] gi|315921830|ref|ZP_07918070.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695705|gb|EFS32540.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 765 Score = 44.2 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 10/150 (6%), Positives = 35/150 (23%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + +A + + + ++ E+T +++ Sbjct: 76 TKKEDKVVSATKSEEANKTKETAPVKAAPQPSKKEESTNKEKETVVVEAKAENTATPKRK 135 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R+ A + + + + + + A +N Sbjct: 136 VGRPRKSSDAEEKKEVENAKPAAPKVVEPKPVVAEKATGATEKPAPVQQQTAEKKAKNKP 195 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + E + + V + + + Sbjct: 196 AAEANKPVAETNKPATEPNKPVVEKKVIDK 225 >gi|225848130|ref|YP_002728293.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644676|gb|ACN99726.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1] Length = 573 Score = 44.2 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 5/145 (3%) Query: 35 KKQIKGNIYLAKVTR-VEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93 K G++ KV + +E AFVD GF+P EI + +IP SD+ +L +E Sbjct: 431 SKHKVGDVVKGKVKKLIEKG---AFVDITDEIEGFIPVSEISKERIKIP-SDKLSLHQEV 486 Query: 94 NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153 + +T + D + + +E ++++ A ++ + + Sbjct: 487 EAKIIKIDTQNKKITLSIKQLILDQEKKALEEEKKRQEEEKKKAEEEAKRKLLEKLSQKE 546 Query: 154 GGSPEDVPKKFKRQYCIQEVIKNRQ 178 I++ + R+ Sbjct: 547 EKKEPQGEGLGTLGELIRKKLMERE 571 >gi|313224616|emb|CBY20407.1| unnamed protein product [Oikopleura dioica] Length = 1741 Score = 44.2 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 35/144 (24%), Gaps = 5/144 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + + T + V + E P +++ E + E + Sbjct: 1323 KSRAKKEVAATPVRRSRRKTTVKRRPRARKVEEPEESSPAKQAKIDEPEYVEAIPAEVSA 1382 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR RR T+ + I E SD G Sbjct: 1383 AP-----RRTRRNSKTETAEVKKEEPAKKIAKRRKRDTSASAESSDNEAATKPTRGRKAK 1437 Query: 687 TENYDVSIPPVSTPEMESSNSSSD 710 EN+ + + S S Sbjct: 1438 KENFAETEKKIGKSPKRPSRKSKK 1461 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 22/237 (9%), Positives = 67/237 (28%), Gaps = 15/237 (6%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + + + ++ + A + + V N +++ ++ E Sbjct: 1209 TTETESSPVISKRDRKSNATKAEESVNIVEAPVAPAEKNTRKSLLLMSEES-------AE 1261 Query: 555 GIELADKLFYIEKGSPVQALVNT---GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + E + ++ + + ++ +P+ + Sbjct: 1262 DAVVKSQAKVFESTKDAEISDYPFLLEASKKEETDETAKELDVVEQKTSSTEVPLVVATP 1321 Query: 612 LEDIQDNIVSEESTGVIRKRR---RRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + V+ R++ RR R R+ + + + + V ++ Sbjct: 1322 SKSRAKKEVAATPVRRSRRKTTVKRRPRARKVEEPEESSPAKQAKIDEPEYVEAIPAEVS 1381 Query: 668 MEPSDITNHNLLENGAHGFTE-NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P ++ E E ++ + +S ++ K TR K +K Sbjct: 1382 AAPRRTRRNSKTETAEVKKEEPAKKIAKRRKRDTSASAESSDNEAATKPTRGRKAKK 1438 >gi|195147882|ref|XP_002014903.1| GL19422 [Drosophila persimilis] gi|194106856|gb|EDW28899.1| GL19422 [Drosophila persimilis] Length = 1654 Score = 44.2 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 15/242 (6%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E+ R+R S T + + + A R+ E Q Sbjct: 1394 EVDREREHEQRHSSLTSSHRSSRETNNRPKERTEAELNQRARERAQRQEE---------L 1444 Query: 526 DVVLYLLNQKRATIVEYEARFG----VSINVVIGIELADKLFYIEKGSPVQALVNTGHKV 581 + NQKR E R ++++V + ++ + Sbjct: 1445 EAAAAQRNQKREKTSRREERHRHEGLETVDLVASNS--TEHRQFDEYEGRHRDRDLSSVS 1502 Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + + + +++E + ++ S + +S R + + R + + + Sbjct: 1503 NESNGSMQHRRSLEAIEYEKDSKRRKLESSSSSSKKVEELVDSVKKARLKTKERNKDKMS 1562 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + DA + ++ ++S ++ + + + + + Sbjct: 1563 DEERDARKDRKLGRKRDRAEESNNVEHKRRREAQNGDDDLRERERHRDKSPRERSHEKFD 1622 Query: 702 ME 703 E Sbjct: 1623 RE 1624 >gi|121710324|ref|XP_001272778.1| AT hook motif protein [Aspergillus clavatus NRRL 1] gi|119400928|gb|EAW11352.1| AT hook motif protein [Aspergillus clavatus NRRL 1] Length = 890 Score = 44.2 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 9/163 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD---EALLPIPKSESLEDIQDNIVSEE 623 K P + + +++ + + + E + D E Sbjct: 528 KVRPAEIEQDKPQPSDQNAEQETQKDPEKEQEPESQLEVEKEAQIPPASADESQLHRQPE 587 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 S +KRR R + +AG + Q ++ + +P Sbjct: 588 SALRPKKRRGRPSLASKRNEG-NAGGAEERQERQETQPETGEEAPQPVKKRTRQPRGETV 646 Query: 684 HGF-----TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + +P E ++ +KT+ KR Sbjct: 647 PVTVHRLVNVASLAELSRPDSPAEEEDSADELAARRKTKLPKR 689 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 12/158 (7%), Positives = 40/158 (25%), Gaps = 3/158 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + +++ + A P + + S+++ Sbjct: 487 EQEETQPEAKSDNITNKEQEAETTVPQHLVRKKKGRAGRPAKVRPAEIEQDKPQPSDQNA 546 Query: 626 GVIRKR-RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ + + + + S+ ++ + + + P + Sbjct: 547 EQETQKDPEKEQEPESQLEVEKEAQIPPASADESQLHRQPESALRPKKRRGRP--SLASK 604 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N + E + P K R + R Sbjct: 605 RNEGNAGGAEERQERQETQPETGEEAPQPVKKRTRQPR 642 >gi|23270703|gb|AAH36263.1| LOC23117 protein [Homo sapiens] Length = 678 Score = 44.2 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 7/160 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 508 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 567 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHN--LLEN 681 ++ +R+R P G V + + EP + Sbjct: 568 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 627 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S P ++ + Sbjct: 628 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEP 667 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 532 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 591 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 592 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 651 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 652 EPSRKPKRRRAADVEPSLPEPKR 674 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 10/150 (6%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630 + T + PS D N++ K + + + R+ Sbjct: 531 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRV 590 Query: 631 ---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R+ +RR A D V S +E + Sbjct: 591 GDVEPSRKPKRRRAAD------VEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPK 644 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + P P+ + + + R Sbjct: 645 RRRVGDVEPSRKPKRRRAADVEPSLPEPKR 674 >gi|293372703|ref|ZP_06619085.1| transcription termination factor Rho [Bacteroides ovatus SD CMC 3f] gi|299146813|ref|ZP_07039881.1| transcription termination factor Rho [Bacteroides sp. 3_1_23] gi|292632512|gb|EFF51108.1| transcription termination factor Rho [Bacteroides ovatus SD CMC 3f] gi|298517304|gb|EFI41185.1| transcription termination factor Rho [Bacteroides sp. 3_1_23] Length = 765 Score = 44.2 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 10/150 (6%), Positives = 35/150 (23%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + +A + + + ++ E+T +++ Sbjct: 76 TKKEDKVVSATKSEEANKTKETAPVKAAPQPSKKEESTNKEKETVVVEAKAENTATPKRK 135 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R+ A + + + + + + A +N Sbjct: 136 VGRPRKSSDAEEKKEVENAKPAAPKVVEPKPVVAEKATGATEKPAPVQQQTAEKKAKNKP 195 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + E + + V + + + Sbjct: 196 AAEANKPVAETNKPATEPNKPVVEKKVIDK 225 >gi|160886329|ref|ZP_02067332.1| hypothetical protein BACOVA_04338 [Bacteroides ovatus ATCC 8483] gi|156108214|gb|EDO09959.1| hypothetical protein BACOVA_04338 [Bacteroides ovatus ATCC 8483] Length = 765 Score = 44.2 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 10/150 (6%), Positives = 35/150 (23%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + +A + + + ++ E+T +++ Sbjct: 76 TKKEDKVVSATKSEEANKTKETAPVKAAPQPSKKEESTNKEKETVVVEAKAENTATPKRK 135 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R+ A + + + + + + A +N Sbjct: 136 VGRPRKSSDAEEKKEVENAKPAAPKVVEPKPVVAEKATGATEKPAPVQQQTAEKKAKNKP 195 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + E + + V + + + Sbjct: 196 AAEANKPVAETNKPATEPNKPVVEKKVIDK 225 >gi|46143205|ref|ZP_00204412.1| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 135 Score = 44.2 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 36/49 (73%) Query: 362 EVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEI 410 + S G ++I+ TEAL +ID+NS RSTR IE+TAL TNLEAA+EI Sbjct: 79 KCVYRSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEI 127 >gi|326476550|gb|EGE00560.1| IRE protein kinase [Trichophyton tonsurans CBS 112818] Length = 1151 Score = 44.2 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 11/161 (6%), Positives = 39/161 (24%), Gaps = 4/161 (2%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 +I + + IE+ + + P + + + + Sbjct: 542 KNIISIPDNSVTTSSKTIEQKPADERTEYPALVIHP----PPEQEEQKETDETLTESKVE 597 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + N+++ E+ R + + D + + Sbjct: 598 PVPADSKPSPNLLTSETNQETPSRDSQTPAADEPAEAEDPAAKTPRKKARRGRRGGQAHK 657 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + +N + + +S ++ + S+ Sbjct: 658 RGKKNAQESADPDNPPSQSGGSQGARLNSLSDLQLARTASN 698 >gi|68479205|ref|XP_716408.1| hypothetical protein CaO19.12742 [Candida albicans SC5314] gi|68479334|ref|XP_716346.1| hypothetical protein CaO19.5277 [Candida albicans SC5314] gi|46438012|gb|EAK97350.1| hypothetical protein CaO19.5277 [Candida albicans SC5314] gi|46438075|gb|EAK97412.1| hypothetical protein CaO19.12742 [Candida albicans SC5314] Length = 407 Score = 44.2 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 38/135 (28%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 ++ + + + ++ + + + ++E T I+KR RR ++ + Sbjct: 253 EKPEKSKNGEDVSKDKSVNKDTKGQEDVKLSKKSNGSKSTDEGTKEIKKRPRRSKKPKDT 312 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 ++ S + + + N ++ + S PP Sbjct: 313 SEKTKKQTESKSGTTSDEKTEVAKPSKATKSKANKPTSKSSKPESKDEQSSSTPPKKQSR 372 Query: 702 MESSNSSSDPIVKKT 716 S K Sbjct: 373 KPKSQPKDSQQTTKV 387 Score = 41.5 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 2/157 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSE 622 + + + + + P KN E V +D+++ K E ++ + + S+ Sbjct: 231 TVSREKSKEKDKSKEKTKDKGKEKPEKSKNGEDVSKDKSVNKDTKGQEDVKLSKKSNGSK 290 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + ++ ++R RR + D + S D+ ++ + Sbjct: 291 STDEGTKEIKKRPRRSKKPKDTSEKTKKQTESKSGTTSDEKTEVAKPSKATKSKANKPTS 350 Query: 683 AHGFTENYDV-SIPPVSTPEMESSNSSSDPIVKKTRW 718 E+ D S + S + T+ Sbjct: 351 KSSKPESKDEQSSSTPPKKQSRKPKSQPKDSQQTTKV 387 >gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana) tropicalis] Length = 943 Score = 44.2 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 42/163 (25%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 +++ + + + G + GS + + + Sbjct: 779 PNISNASYPAATLFGARDGASAGSESGSKERHSDSRGRHGDSHRHGDREGHRHGDGHRHS 838 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + E + G R+ R RR + + + + + D Sbjct: 839 SSSRHGERNGGEGRRESSRDGRREGESRRDSSRDGGEGRRESSRDGEGRRESSRDGDGRR 898 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E ++ D + ++ P KK+RW Sbjct: 899 ESSGEGRREATRDDGDSRKEGTREAKNDNFAIPEPPKRKKSRW 941 >gi|300122679|emb|CBK23246.2| unnamed protein product [Blastocystis hominis] Length = 903 Score = 44.2 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 10/150 (6%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-SLEDIQDNIVSEES 624 E+GSP A ++ + + S + Sbjct: 140 ERGSPALASSRAPLHRSRREAPSRRVGAGREEAREVPVAGAQPTRVSAKPSPQVGRRGRP 199 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH--NLLENG 682 + + R+RRR+ AG+ S+ + S P+ N N N Sbjct: 200 EILADEVRQRRRK-------QGAGLTPRFSTSETRNTRSDRTSRTPNRTPNRTPNRTPNR 252 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 T N + P TP + + + Sbjct: 253 TPNRTPNRTPNRTPNRTPNRTPNRTPNRTQ 282 >gi|157868455|ref|XP_001682780.1| hypothetical protein [Leishmania major strain Friedlin] gi|68126236|emb|CAJ03601.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 4825 Score = 44.2 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 17/189 (8%) Query: 506 SVEEYLLQYTAHNIIVHTHS--DVVLYLLNQKRATIVEYEARFGVSINVVIG-------- 555 E+ + A + V L +R + + V + Sbjct: 4290 KNEQAQRRDNAEQTRSQHNPYRAVKEALQRHQRQ-MQQLNLNQHVEVTDEKDEPKAEKPP 4348 Query: 556 -IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + A +E+ + G ++A + + + + K ED Sbjct: 4349 KPDQAGDQEDVEEFDFDEDGDREGLAAAEHTEAKPTETDAYEDEESHSDASGDKDGIGED 4408 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 ++ + + T RR+RR+ R T+ + ++ E + + Sbjct: 4409 EDESADAPQDT-----RRKRRQSRDELTELEAKEAAATSQRKRSKRKVRTTAGDEDASAS 4463 Query: 675 NHNLLENGA 683 ++ Sbjct: 4464 EDQEDDDST 4472 >gi|170040101|ref|XP_001847850.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167863662|gb|EDS27045.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 970 Score = 44.2 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 3/157 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + Q L+ + + + ++ A KS+ +E Sbjct: 241 ELAREKERQKLLAREQERNRIAAELAAKDREREKQKEFAKEKGKKSKEVEKDTPEATGTT 300 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPSDITNHNLLE 680 R R+RR +T S S + D S + Sbjct: 301 PAPTKEPSSSRERKRRQSTKPGAKPDESPKRSKSVSEIAKDSSTKEASKKDGKKETEANP 360 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + T +S K T+ Sbjct: 361 ESKKKDAKTVSKTKETNGTAATAEKSSKEASKEKDTK 397 Score = 39.6 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 14/158 (8%), Positives = 42/158 (26%), Gaps = 1/158 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ V+ + + + + + +L + + + + E Sbjct: 161 ERQRQVELAKEKERLRLLELEKQRIAAELAVEREKQRVLDLAREKERRAAELAKQREREQ 220 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +++ R R + + + + + E + + Sbjct: 221 ELAKQKERELELAREKEKAAELAREKERQKLLAREQERNRIAAELAAKDREREKQKEFAK 280 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + TPE + + +R KRR+ Sbjct: 281 EKGKKSKEVEK-DTPEATGTTPAPTKEPSSSRERKRRQ 317 >gi|326477436|gb|EGE01446.1| IRE protein kinase [Trichophyton equinum CBS 127.97] Length = 1151 Score = 44.2 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 11/161 (6%), Positives = 39/161 (24%), Gaps = 4/161 (2%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 +I + + IE+ + + P + + + + Sbjct: 542 KNIISIPDNSVTTSSKTIEQKPADERTEYPALVIHP----PPEQEEQKETDETLTESKVE 597 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + N+++ E+ R + + D + + Sbjct: 598 PVPADSKPSPNLLTSETNQETPSRDSQTPAADEPAEAEDPAAKTPRKKARRGRRGGQAHK 657 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + +N + + +S ++ + S+ Sbjct: 658 RGKKNAQESADPDNPPSQSGGSQGARLNSLSDLQLARTASN 698 >gi|149633805|ref|XP_001510724.1| PREDICTED: similar to WDR9 protein, form A [Ornithorhynchus anatinus] Length = 2599 Score = 44.2 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 1/231 (0%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 R A + + + + + + N+K E + Sbjct: 2218 RKIRGKAKVVRKDTVPKAFTRKTRKRKCVLNQEASVQMTNEKLKARTFTEKVPRRCATIA 2277 Query: 554 IGIELADKLFYIEKGSPVQA-LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 E SP + + K+ + + + K + + ++ SE Sbjct: 2278 ANKIRKMSDVKEENSSPESVCMKRSSRKLPHRTASAAARKRLLTISEENDAGFRYDSERE 2337 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +D + + S +R R ++ + + S N + +P Sbjct: 2338 QDDTNREMRSPSASDPGSKRCNSGSEREKSESKSSLKGTQKSWPANGEESPSAQMKDPEA 2397 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E+G ++ + T E S +KTR RRK Sbjct: 2398 KNYPSEDESGKKAPCQSTSGQKSTLETNSGEDECGSEIWSDRKTRRMPRRK 2448 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 35/159 (22%), Gaps = 6/159 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +G + + G + + P+ S + + E Sbjct: 1979 TRGRKGRKPLPRGTATIPKKMILYDSEGDTNFECESEKEPVELSAFRDQAFEARSEIEKK 2038 Query: 626 --GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + S+ + F D +H + Sbjct: 2039 SVRESENEDSDSESHSKGARWKNRRASGPKSTPVSFKTKHFSTASSEEDSKSHTPGDENE 2098 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +G + P ++S + +RW RR Sbjct: 2099 NGASCLGTSGKKPA----AKNSKEEEEAGPGPSRWRDRR 2133 >gi|73959105|ref|XP_536972.2| PREDICTED: similar to Ribosomal L1 domain containing protein 1 (Cellular senescence inhibited gene protein) (PBK1 protein) (CATX-11) [Canis familiaris] Length = 490 Score = 44.2 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 46/191 (24%), Gaps = 15/191 (7%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R + + K ++ Q + Sbjct: 300 EKRKNKRLEKQGKKAASAP-----KEEDADPKISDAVAKDPAPQKEKMQAREKKEAGKGK 354 Query: 603 LLPIPKSESLEDIQ----------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + ES ++I +NI + + +++ RP A + Sbjct: 355 TQQKVQDESEDEIPLLVPIGTPAKENIEVQNHAAGKKSQKKSPGPNRPRGKKRKACPGLE 414 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 +P N + G + + P + ++ S+ Sbjct: 415 TPKAAEAKTPGNGPEKKPRIKEEAEKERNSSLGKKDPRQKTKKPGARFFTTANKSAKKAP 474 Query: 713 VKKTRWWKRRK 723 +W K+RK Sbjct: 475 HTPKQWPKKRK 485 >gi|237843607|ref|XP_002371101.1| splicing factor, arginine/serine-rich 4, putative [Toxoplasma gondii ME49] gi|211968765|gb|EEB03961.1| splicing factor, arginine/serine-rich 4, putative [Toxoplasma gondii ME49] Length = 1461 Score = 43.8 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 1/151 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + Q + + L S E + + + Sbjct: 837 QNASDHTVPDREPQVFAALSRNARRHSELPDLRRQDSSENEGANAHKHGRSLASEEKHPK 896 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 +R + A + + D D E L E + Sbjct: 897 KREGESKEAEKTDSSPSKKKQHATAKSPKDVQDNRSEGRTRRKRPLCETSNESEKADGGK 956 Query: 693 SIPPVSTPEM-ESSNSSSDPIVKKTRWWKRR 722 + P +P +++ S+S P KK R+ Sbjct: 957 NRPVRKSPRDGQTAKSASKPTAKKPPNRDRQ 987 >gi|195012259|ref|XP_001983554.1| GH15516 [Drosophila grimshawi] gi|193897036|gb|EDV95902.1| GH15516 [Drosophila grimshawi] Length = 1158 Score = 43.8 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 12/153 (7%), Positives = 31/153 (20%), Gaps = 2/153 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P ++ K + S + + + + + Sbjct: 370 PFRSRSPERRKETKSRRNDSSPDSRRENSRRHKSKERQAATQTPPQRQRSKEKRQRSKE- 428 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 ++R + R+R + + + + + Sbjct: 429 -KQRSKERQRSKERQRSKERHRSKDRATSKERQQSKERQQRQKERKRSKERQKSKERLRS 487 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + E S P K+ K R Sbjct: 488 KERQRSKERLRSKERLRSKDRPKSKEKLRSKER 520 Score = 41.1 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 33/142 (23%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 S S N ++ P S R++ + RR + Sbjct: 331 TRASSTDSARSNSPVRKSKKSAKSRPPPADAGSGTPLDNPFRSRSPERRKETKSRRNDSS 390 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 D S + + + + + + + + Sbjct: 391 PDSRRENSRRHKSKERQAATQTPPQRQRSKEKRQRSKEKQRSKERQRSKERQRSKERHRS 450 Query: 702 MESSNSSSDPIVKKTRWWKRRK 723 + + S K+ + ++ + Sbjct: 451 KDRATSKERQQSKERQQRQKER 472 >gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329] Length = 522 Score = 43.8 bits (101), Expect = 0.092, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 1/165 (0%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P ++ Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +E+ G + +RR + + N +D + +P D + Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGN-REDQGRAHSKPDDRKPNGN 470 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 NG + + + + +S +RRK Sbjct: 471 KPNGNKPSGNKPNGNKSGNAGKPSGNRKPNSAKPAGNKPSGQRRK 515 >gi|325954515|ref|YP_004238175.1| PSP1 domain protein [Weeksella virosa DSM 16922] gi|323437133|gb|ADX67597.1| PSP1 domain protein [Weeksella virosa DSM 16922] Length = 487 Score = 43.8 bits (101), Expect = 0.092, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 47/173 (27%), Gaps = 8/173 (4%) Query: 525 SDVVLYL-LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 DV ++ LN++ I E + + +E+ N ++ Sbjct: 315 EDVKEFIRLNKENQKIDSLEELSKNIMETKPVFTDVIEEDSLERFDRKNKSQNKRNRQNR 374 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLE---DIQDNIVSEESTGVIRKRRRR----RR 636 + + + + S + + EE+ + ++RRR+ + Sbjct: 375 QRNSKESNPKQSTQSTRQRKPQNRTATSGKQQVPSTPSKPEEENKTLHKQRRRKPVPVKN 434 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + T+ V + ++ + G ++ Sbjct: 435 KTEQRTNPIKKQDVQPTKKNTHQGQNTVQHGKQEQKSKPKKRYNRGPQNRKKD 487 Score = 41.5 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 41/147 (27%), Gaps = 4/147 (2%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV+ + + + S ++ + + + + + ++ +E+ ++ + Sbjct: 313 PVEDVKEFIRLNKENQKIDSLEELSKNIMETKPVF----TDVIEEDSLERFDRKNKSQNK 368 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + R+ R+R ++ + + QN S + + + Sbjct: 369 RNRQNRQRNSKESNPKQSTQSTRQRKPQNRTATSGKQQVPSTPSKPEEENKTLHKQRRRK 428 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 P K T Sbjct: 429 PVPVKNKTEQRTNPIKKQDVQPTKKNT 455 >gi|221484742|gb|EEE23036.1| splicing factor, arginine/serine-rich, putative [Toxoplasma gondii GT1] Length = 1461 Score = 43.8 bits (101), Expect = 0.093, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 1/151 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + Q + + L S E + + + Sbjct: 837 QNASDHTVPDREPQVFAALSRNARRHSELPDLRRQDSSENEGANAHKHGRSLASEEKHPK 896 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 +R + A + + D D E L E + Sbjct: 897 KREGESKEAEKTDSSPSKKKQHATAKSPKDVQDNRSEGRTRRKRPLCETSNESEKADGGK 956 Query: 693 SIPPVSTPEM-ESSNSSSDPIVKKTRWWKRR 722 + P +P +++ S+S P KK R+ Sbjct: 957 NRPVRKSPRDGQTAKSASKPTAKKPPNRDRQ 987 >gi|312216405|emb|CBX96356.1| hypothetical protein [Leptosphaeria maculans] Length = 887 Score = 43.8 bits (101), Expect = 0.094, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 31/114 (27%) Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + + ++ S RRRRR + + D + + M Sbjct: 2 PDLSDRERERDPSRRRPHGDEPRRRRRESHGGSAEPERRRQSLDPERRRKRESRAEPMIN 61 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 D + + D S + PE ++ P R + RR Sbjct: 62 TNIDTNTVHNHDGRRRNGHRPTDSSGELLPKPERQARAKQRSPSRPSRREYARR 115 >gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC 43183] gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC 43183] Length = 716 Score = 43.8 bits (101), Expect = 0.094, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98 G +Y KV + P AFV++ + G L EI D + L Sbjct: 628 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 675 Query: 99 DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 + + + + D +V QE E+ Sbjct: 676 EGDEIDVKLLDIDPKTGKFKLSRKVLLPKPERQERPEKKDK 716 >gi|160932316|ref|ZP_02079707.1| hypothetical protein CLOLEP_01151 [Clostridium leptum DSM 753] gi|156868918|gb|EDO62290.1| hypothetical protein CLOLEP_01151 [Clostridium leptum DSM 753] Length = 417 Score = 43.8 bits (101), Expect = 0.096, Method: Composition-based stats. Identities = 16/161 (9%), Positives = 40/161 (24%), Gaps = 6/161 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G + + + + ++ + + + + P + + + + E Sbjct: 248 GKKAERGPSKTEEPPAPAEKQAAEGDGAHGDEPRTEEPARPAPAGKKAEKGPSKTEEPSA 307 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 K++ + + + P +GAHG Sbjct: 308 PAKKQAAEGDGAHGDEPRTEEPAQPAPAGKKAERGPSKTEEPPVPAEKQAAEGDGAHGDE 367 Query: 688 ENYDVSIPPVSTPEM------ESSNSSSDPIVKKTRWWKRR 722 P E E + + KK R ++R Sbjct: 368 PRTGEPAQPAPAGEKAGGRAPEGEQQEAGAMPKKIRKGRKR 408 >gi|229496567|ref|ZP_04390281.1| translation initiation factor IF-2 [Porphyromonas endodontalis ATCC 35406] gi|229316464|gb|EEN82383.1| translation initiation factor IF-2 [Porphyromonas endodontalis ATCC 35406] Length = 1000 Score = 43.8 bits (101), Expect = 0.097, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 15/169 (8%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-----SLEDIQDNIVSEES 624 + V + + AP+ K E E P + E + + I + Sbjct: 228 KSEEPVTPKVEAPAQEVAPAVPKGEENHTNSEIYRPSERKELGVTVVGKIDLNTINPPKK 287 Query: 625 TGVIRKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 T + R RR+R + A D + + N + P++ Sbjct: 288 TDKGERNRGRRKRIGSQAVDVKSEAAKGIDPVNPNIRRNSGNNKNGGAPQGSTPNNQRRR 347 Query: 677 NLLENGAHG--FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N EN E + + + KK R K R+ Sbjct: 348 NKKENNKPVAPKQEITEEDVQKQVKETLARLQGKKTSFEKKARIRKDRR 396 >gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseobacter litoralis Och 149] gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseobacter litoralis Och 149] Length = 703 Score = 43.8 bits (101), Expect = 0.097, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 36/159 (22%), Gaps = 7/159 (4%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + L G P K E + D + E+ Sbjct: 516 LTRLAQAPDLGQDRPGGGKPGAKPYRKKRPEDRDA-RPERAAKPAREARPSYDARPAREA 574 Query: 625 TGVIRKRR--RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT----NHNL 678 + + + ++ P + + + ++ + +P Sbjct: 575 KPQDKPYKPAAAKGKKPPKSHKTERSPMKPGATPKPKTTGGDTADRKPGKAKPVWTKEAR 634 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 A T + + + DP K R Sbjct: 635 DGAKAERVTRDKAHREDGGAARPNTKAAPKKDPAASKKR 673 >gi|119490691|ref|XP_001263068.1| Mis12-Mtw1 protein, putative [Neosartorya fischeri NRRL 181] gi|119411228|gb|EAW21171.1| Mis12-Mtw1 protein, putative [Neosartorya fischeri NRRL 181] Length = 587 Score = 43.8 bits (101), Expect = 0.097, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 44/168 (26%), Gaps = 4/168 (2%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + F + + + + + P ++ E+++ Sbjct: 87 DIEGFQFTRLPSKKPRSSVDAAPENLNPVPEVPPQQSPRRGRPPKKKKTETVPEENVEHT 146 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 S E TG + RRRR P ++V + PS Sbjct: 147 EKSAEVTGKRQTRRRRSAVTEPEPQPQSVTRSSTRKREETESVPKEKKRRKGRPSKTEVE 206 Query: 677 NLLENGAHGFTENYDV--SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + ++ ++P TP ++ + + RR Sbjct: 207 ARNGFVSPEPQQSGTAKIALPLADTPVIQRNKEMRKEAKSEKGGKGRR 254 >gi|169771881|ref|XP_001820410.1| ribosomal RNA methyltransferase Nop2 [Aspergillus oryzae RIB40] gi|83768269|dbj|BAE58408.1| unnamed protein product [Aspergillus oryzae] Length = 751 Score = 43.8 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 40/155 (25%), Gaps = 15/155 (9%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + S+A + K+ + D+ + +E + E Sbjct: 584 TDKKPEGEAASEPKSSEARATPKSDDEDVIDKTPITDDDGNVMETEGGSFGPFEEDDDAD 643 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE--------- 680 + R R R + V++ S +S + + + Sbjct: 644 RIARAERNRLRRKGINPKAVLNKPSKKSKSEPESTEESKDSESSAPEPKKKTATTTPEKA 703 Query: 681 -----NGAHGFTENYDVSIPPV-STPEMESSNSSS 709 N E+ STPE + S S + Sbjct: 704 KKAQKNTKPKSQESTTPEKKSEGSTPEKKKSKSQA 738 >gi|296810184|ref|XP_002845430.1| cupin domain-containing protein [Arthroderma otae CBS 113480] gi|238842818|gb|EEQ32480.1| cupin domain-containing protein [Arthroderma otae CBS 113480] Length = 647 Score = 43.8 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 36/134 (26%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + D+Q + + L + K + ++ + ++ Sbjct: 235 DSADDDHESAAHDDVDAQVSEVEAELSEDSPPPVLNSLNKGKKHKEADKAAGKKNGENIV 294 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +RR R+P + + + S + S++ E + Sbjct: 295 TDPPAKRRGRKPKSQREERDPENREDENPRPAKKSKKATTQSSNLQMTAEQEKDLKNVVD 354 Query: 689 NYDVSIPPVSTPEM 702 N + P++ Sbjct: 355 NITKNDGPLNKKRS 368 >gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis] Length = 898 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 42/163 (25%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 +++ + + + G + GS + + + Sbjct: 734 PNISNASYPAATLFGARDGASAGSESGSKERHSDSRGRHGDSHRHGDREGHRHGDGHRHS 793 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + E + G R+ R RR + + + + + D Sbjct: 794 SSSRHGERNGGEGRRESSRDGRREGESRRDSSRDGGEGRRESSRDGEGRRESSRDGDGRR 853 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E ++ D + ++ P KK+RW Sbjct: 854 ESSGEGRREATRDDGDSRKEGTREAKNDNFAIPEPPKRKKSRW 896 >gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633] gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633] gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] Length = 522 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 9/170 (5%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P ++ Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNASSENA 411 Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 +E+ G + +RR + +T+ AG Q D + Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRAHSKPDDRKPNGNK 471 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N N ++ + P + N++ K + ++ + Sbjct: 472 PNGNKPNGNKPNGNKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 517 >gi|325118225|emb|CBZ53776.1| putative splicing factor, arginine/serine-rich 8 [Neospora caninum Liverpool] Length = 1184 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 36/149 (24%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 G S +DE + E E+ + E+ + +R Sbjct: 198 DGPGESESVRSPREGAKGRGGSQSEDEDRDVSEEREETEERETQRGEREAEDEGGRTQRS 257 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 RRR+ + ++ + S + + E A E Sbjct: 258 RRRQAFGREDEESDRRKRSREDEAETRRSSETPGVKREEDALEDGETSASEEAEAGAHPR 317 Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ +D K R+ Sbjct: 318 AASPATARRQRSAGTDGTETPGGTRKGRE 346 >gi|301604702|ref|XP_002932016.1| PREDICTED: protein kinase C delta type-like [Xenopus (Silurana) tropicalis] Length = 483 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 5/156 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + K + +A + D + + E+++ E Sbjct: 12 SQTPEEKEPLQDKGCMEKKAKNQDGEVFPTDKPNLKEKTSPDENMKMSPCGEKPPEDGTN 71 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 RKR ++ ++ + + + S ++ ++ +L + Sbjct: 72 KRKRSKKPTEKKKDSQEERKSLSDETSKPESKKRKKDKEQKNEKKTSSEDLQSSSYGRSK 131 Query: 688 ENYD-VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E D +P++ S+ KK+R RR Sbjct: 132 EQEDNKEKKRPRSPDLLEDESAK----KKSRVEGRR 163 >gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 522 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 9/170 (5%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P ++ Sbjct: 352 ASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAAGENA 411 Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 +E+ G + +RR + +T+ AG Q + D + Sbjct: 412 PATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRANSKPDDRKPNGNK 471 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N N ++ + P + N++ K + ++ + Sbjct: 472 PNSNKPSGNKPNGNKSGNAGKPSGNR----KPNNAKPAGNKPSGQRRKPR 517 >gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT 12056] gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT 12056] Length = 753 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98 G +Y KV + P AFV++ + G L EI D + L Sbjct: 665 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 712 Query: 99 DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 + + + + D +V QE E+ Sbjct: 713 EGDEIDVKLLDIDPKTGKFKLSRKVLLPRPERQERPEKKEK 753 >gi|325119213|emb|CBZ54767.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 2302 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 9/143 (6%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 KG A + K +APS + E + + + S E + TG Sbjct: 553 KGQRASAASGSPKKGKGRRRAPSDVDSAEREEKPKPRRERKQDASRERKKSRGKPSGPTG 612 Query: 627 -VIRKRRRRRR------RRRPATDHHDAGVVSDVS--SIQNVIDDSFDMYMEPSDITNHN 677 RRRR R RR+P + S +++ S + S ++ Sbjct: 613 GAAGSRRRRERTVKAQARRQPNLQNQAESNDRPPRFASPASLVTVSASVKTGRSPAGRNS 672 Query: 678 LLENGAHGFTENYDVSIPPVSTP 700 GA VS+P P Sbjct: 673 RHGAGAVEVEVEGRVSVPESPVP 695 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 42/176 (23%), Gaps = 10/176 (5%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + + + + D L K++ ++ Sbjct: 313 SPTFSTPDAAVTLIDSRAEEGLEERQPDFVPATRESGSGETGLQTDTGLKQGLKAKKGDE 372 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + G K + + +R + D D +P + Sbjct: 373 EAKRGKESKEKGSAGKELKSQEQRTAGAKQAEREKERDRRRATGKRDP---EQKKPRRVQ 429 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTP-------EMESSNSSSDPIVKKTRWWKRRK 723 + + + T D +P + S+ P ++ WKRR+ Sbjct: 430 SESPRFSAGLLGTSRTDAVPQVPPSPGSPGTARRNTADKSAKKPNQRRNVLWKRRR 485 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 34/142 (23%), Gaps = 10/142 (7%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 GS + + + + A K + ++ S E + RR R++ Sbjct: 538 ASGSMADRDGFPRGSKGQRASAASGSPKKGKGRRRAPSDVDSAEREEKPKPRRERKQD-- 595 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS----IP 695 A+ + + + E+ D P Sbjct: 596 -ASRERKKSRGKPSGPTG---GAAGSRRRRERTVKAQARRQPNLQNQAESNDRPPRFASP 651 Query: 696 PVSTPEMESSNSSSDPIVKKTR 717 S + P + +R Sbjct: 652 ASLVTVSASVKTGRSPAGRNSR 673 >gi|197303047|ref|ZP_03168095.1| hypothetical protein RUMLAC_01774 [Ruminococcus lactaris ATCC 29176] gi|197297902|gb|EDY32454.1| hypothetical protein RUMLAC_01774 [Ruminococcus lactaris ATCC 29176] Length = 908 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 40/171 (23%), Gaps = 21/171 (12%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW-----QDEALLPIPKSESLEDIQDNIV 620 E+ + T + + + ++N ++ + + D Sbjct: 151 ERTVRTERPAQTAGRTSGEGRPVRQERNDRPQRPGSDRENRPVRDSRDARGGRPNGDGRG 210 Query: 621 SEESTGVIRKRRRRRRRR-----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP----- 670 + G R R R R D + N +D D P Sbjct: 211 PRQERGPRDNRDARGGREQGFGGRDNRDGRNGQGSRPDRKNDNRRNDRADRDAAPIVEQQ 270 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPE------MESSNSSSDPIVKK 715 N + + E D + +E + P KK Sbjct: 271 KSQRNKAKDKERDNKKKEYRDEAFEGKGKKGKKQKNVVEVKKPQNKPEEKK 321 >gi|289619154|emb|CBI54422.1| unnamed protein product [Sordaria macrospora] Length = 1448 Score = 43.8 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 10/148 (6%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT-D 643 Q D +E E E + + ++++ + R +R T + Sbjct: 1056 QQKRKGDDTMEKEKGPEPQEQQGTQEEASNSRKRGATDDADADDDESSSRPNKRAKQTPE 1115 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 + S +N D + + + + + P P+ Sbjct: 1116 PEQNPAENPSKSPKNKRRAEDDADYDNENDDSESSGRPSKRAKQTPEPENPPAEKPPQSP 1175 Query: 704 SSNSSSDPIV---------KKTRWWKRR 722 + + P KK + RR Sbjct: 1176 QNKRKTPPPPDAAEPKTPAKKGKVSTRR 1203 >gi|156542514|ref|XP_001600391.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 1628 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 39/154 (25%), Gaps = 4/154 (2%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + +E+ L + + K ++ P + D Sbjct: 757 DWELERNRNATQLSSLSDSEQQSDVEKAQVKEPPRAQAEKPKPPDVRKRGRPRKTDKSPK 816 Query: 622 EESTGVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 ++ + R R+R R+ +T S + + + + SD + Sbjct: 817 PAASVPEEPKVPAKRSRQRSRQTSTSSPTRRNKKQPLSKETLTTTTTTSSDDGSDGGHRY 876 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + PP + + S + Sbjct: 877 SDSDSDPLAQVKLPPPAPPSHSRRTQPSAADKKR 910 >gi|311266601|ref|XP_003131159.1| PREDICTED: m-phase phosphoprotein 8-like isoform 1 [Sus scrofa] Length = 853 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 4/151 (2%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 E + EK + D + +D K Sbjct: 278 EADSEDSQPEHREEKQMKGARDKAEPDALPEAGFEQQQDGALSADEEDARAKRKKKRPRK 337 Query: 613 EDIQDNIVSEEST---GVIRKRRRRRRRRRPATDHHDAGVVSDVSSI-QNVIDDSFDMYM 668 + + E+ + ++++R + +A ++ S Q+ D Sbjct: 338 TEEPKESRTPENKSPLSEKKPVQKKQRNQDRGRSGAEAEKLAPASPPAQSGSRPGADSPE 397 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVST 699 E + + E + D Sbjct: 398 EEKETQKNEPKEKYQKRQDLDKDEKGRREPK 428 >gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas acidaminovorans] gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas acidaminovorans] Length = 503 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 17/201 (8%) Query: 16 RVVVLRDNRVEEL-DFESEHK---KQIKGNIYLAKVTRVEPSLQ--AAFVDYGG-NRHGF 68 R+ V+ ++EE+ + E + K G+I KV R + AF+D GG G Sbjct: 180 RI-VVSHRQLEEMREQERKETALAKLKVGDIVKGKVLR----MTTFGAFIDLGGIE--GL 232 Query: 69 LPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIAN 128 + EI + P + + + + P + +++E+ Sbjct: 233 MHVSEISWQHIVRPQDELKKGQEIEVKILDIKGEKIALSRKVLLEDPFEVAMKELHEGDI 292 Query: 129 FSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEE 188 + A ++ VE + S + I +K + VQI++ + Sbjct: 293 INCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDI---VKEGDWVQVQILRID 349 Query: 189 RGNKGAAVTTYLSLAGRYSVL 209 +++ A + + Sbjct: 350 EDTHKISLSLKALEADPWDKI 370 >gi|72388472|ref|XP_844660.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62360137|gb|AAX80557.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801193|gb|AAZ11101.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1378 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/224 (5%), Positives = 55/224 (24%), Gaps = 7/224 (3%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 ++ EE + + ++ A + E Sbjct: 440 KAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARK-KAEEEAARKRAEEE 498 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + + + + + ++ A + + + ++ +++ Sbjct: 499 AARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKA 558 Query: 625 TGVIRKRRRRRRRRRPATDH------HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +++ + R+R + A ++ + + ++ + Sbjct: 559 EEEAARKKAEKMRKRAQARNARMKAEEAARKKAEEEAARKRAEEEAARKKAEEEAARKRA 618 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E A E + + + + ++R Sbjct: 619 EEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEVARKR 662 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 9/156 (5%), Positives = 41/156 (26%), Gaps = 2/156 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + + ++ A + + + ++ +++ Sbjct: 420 RSRMREKDTTAKKAEEAARKKAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEE 479 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++ R + A ++ + + ++ + E A Sbjct: 480 EAARKKAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKK 539 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + + + KK ++R Sbjct: 540 AEEEAARKKAEEEAARKKAEEEA--ARKKAEKMRKR 573 Score = 41.5 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 12/225 (5%), Positives = 57/225 (25%), Gaps = 3/225 (1%) Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI 556 A + + + + A + ++ A + E Sbjct: 564 RKKAEKMRKRAQARNARMKAEEAARKKAEEEAARKRAEEEAARKKAEEEAARK-RAEEEA 622 Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 + + + + + + + ++ A + + + + Sbjct: 623 ARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEVARKRAEEEAARKKAEEEAARKKAE 682 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + +++ +++ + R+R A + ++ ++ + +++ E Sbjct: 683 EEAARKKAEEEAARKKAEKMRKRA--QARKARMKAEEAARKKAEEEAARKKAEEEAARKK 740 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E E + ++ ++ K+ Sbjct: 741 AEEEAARKRAEEEAARKKAEEEAARKRAEEEAARKKAEEEAARKK 785 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 5/221 (2%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R+ EE + + ++ A + E + Sbjct: 494 RAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEA 553 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 K + +A K+ +QA + E + +A + + E+ EE Sbjct: 554 ARKKAEEEAARKKAEKMRKRAQARNARMKAEEAARKKAEEEAARKRAEEEAARKKAEEE- 612 Query: 625 TGVIRK---RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 ++ R+R A + + + + + + Sbjct: 613 -AARKRAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEVARKRAEEEAARKK 671 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E E++ ++ + K+ + K R Sbjct: 672 AEEEAARKKAEEEAARKKAEEEAARKKAEKMRKRAQARKAR 712 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 15/218 (6%), Positives = 45/218 (20%), Gaps = 2/218 (0%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R E + + + ++ A E + A++ Sbjct: 696 RKKAEKMRKRAQARKARMKAEEAARKKAEEEAARKKAEEEAARKKAEEEAARKRAEEEAA 755 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +K A + + + + + E Sbjct: 756 RKKAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEE 815 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++R R + A ++ + + ++ + E A Sbjct: 816 EAA--RKRAEEEAARKRAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAAR 873 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + + + + ++R Sbjct: 874 KKAEEEAARKKAEEEAARKKAEEEAARKKAEEEAARKR 911 >gi|332219906|ref|XP_003259100.1| PREDICTED: repetin-like [Nomascus leucogenys] Length = 896 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 15/164 (9%), Positives = 39/164 (23%), Gaps = 4/164 (2%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 ++ + + + S+ + +DE ++ ED Q Sbjct: 629 EQNHQRQDRQTHEDEQNHHRQDRQTHEDEQSHQRRDRQTHEDEQNRQRRDRQTQEDEQTR 688 Query: 619 IVSEESTGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + T + R+RR R+ D D + Q + + Sbjct: 689 QRRDRQTHEDEQDRQRRDRQTHEDEQNRQRRDRQTHEDEQNHQRRDRQTHEDEQNHQRRD 748 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + + ++ ++ R Sbjct: 749 RQTHADEQNRQRQDRQTHEDEQNRQRQDRQTHEDEQNRQRRDRQ 792 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 14/151 (9%), Positives = 34/151 (22%), Gaps = 2/151 (1%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 ++ + + + + + +DE ++ ED QD Sbjct: 643 EQNHHRQDRQTHEDEQSHQRRDRQTHEDEQNRQRRDRQTQEDEQTRQRRDRQTHEDEQDR 702 Query: 619 IVSEESTGVIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + T + R+RR R +H + + D E + Sbjct: 703 QRRDRQTHEDEQNRQRRDRQTHEDEQNHQRRDRQTHEDEQNHQRRDRQTHADEQNRQRQD 762 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 + + + Sbjct: 763 RQTHEDEQNRQRQDRQTHEDEQNRQRRDRQT 793 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 16/187 (8%), Positives = 35/187 (18%), Gaps = 2/187 (1%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 + N +R +E E Sbjct: 603 HQSWDRHSHEGQEGPCGTQDRRTHEDEQNHQRQDRQTHEDEQNHHRQDRQTHEDEQSHQR 662 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 ++ + + + + +DE ++ ED Q+ + Sbjct: 663 RDRQTHEDEQNRQRRDRQTQEDEQTRQRRDRQTHEDEQDRQRRDRQTHEDEQNRQRRDRQ 722 Query: 625 TGVIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 T + +RR R +H + D E + Sbjct: 723 THEDEQNHQRRDRQTHEDEQNHQRRDRQTHADEQNRQRQDRQTHEDEQNRQRQDRQTHED 782 Query: 683 AHGFTEN 689 Sbjct: 783 EQNRQRR 789 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 42/157 (26%), Gaps = 4/157 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + ++ + +DE ++ ED Q+ + T Sbjct: 622 DRRTHEDEQNHQRQDRQTHEDEQNHHRQDRQTHEDEQSHQRRDRQTHEDEQNRQRRDRQT 681 Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R+RR R+ D D + Q + + + Sbjct: 682 QEDEQTRQRRDRQTHEDEQDRQRRDRQTHEDEQNRQRRDRQTHEDEQNHQRRDRQTHEDE 741 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 H + + + ++ ++ R Sbjct: 742 QNHQRRDRQTHADEQNRQRQDRQTHEDEQNRQRQDRQ 778 >gi|212696485|ref|ZP_03304613.1| hypothetical protein ANHYDRO_01023 [Anaerococcus hydrogenalis DSM 7454] gi|212676505|gb|EEB36112.1| hypothetical protein ANHYDRO_01023 [Anaerococcus hydrogenalis DSM 7454] Length = 1670 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 44/213 (20%), Gaps = 12/213 (5%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 + + V + VV Y E E + I + L + + Sbjct: 1467 NKETGKLEVKEERVEPKNKVVEYGSKTDGEFKYESEKAYD--IIIRENPNLEAGKTNVIQ 1524 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 T S + E + + E D E Sbjct: 1525 EGKPGKTETTVKIENSKEVSRDTKTITEKQDKIIEIGTKNVCEIPPVKPDPEKPGEKDPE 1584 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 P + ++ +P + + G Sbjct: 1585 DP--------TNPGEKDPEDPNKPGEKDPKDPEKPDEKDPKDPEKPGKEDPKDPEKPGEK 1636 Query: 688 ENYDVSIPPVSTPEMESSNSS--SDPIVKKTRW 718 + D P P+++ DP + + Sbjct: 1637 DPKDPETPGEENPKIQKPGKEDPKDPENQAKKT 1669 >gi|171696104|ref|XP_001912976.1| hypothetical protein [Podospora anserina S mat+] gi|170948294|emb|CAP60458.1| unnamed protein product [Podospora anserina S mat+] Length = 7657 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 16/158 (10%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + +V K+ + + D+ + + K E E Sbjct: 770 EWIEQQERIVREQRKIIYQQERVANDEREKAERDRRSRDANQKREREEKRALEASGGREP 829 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++R R RR+ DV + D D P+ + + G Sbjct: 830 SRDKERSRDRRK--------------DVIVVVEGRPDVADSVPAPAPTPARSEVSKGKER 875 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E P + + S P VKK +RR+ Sbjct: 876 --EVAPPPSAPALDEKKPAGADSLAPAVKKKSKEERRQ 911 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 43/175 (24%), Gaps = 4/175 (2%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 L Y E+ Q + ++ ++ V E + E Sbjct: 702 RTSPSLERDDGYKERMRLEQEVKRHREDSERHAREEQRLRDEYEVRMKEIREKAEEEERR 761 Query: 613 EDIQDNIVS-EESTGVIRKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + E I + +R+ ++ R + A + + Sbjct: 762 AREEKKKQEWIEQQERIVREQRKIIYQQERVANDEREKAERDRRSRDANQKREREEKRAL 821 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E S + + + ++ V + + P + K R+ Sbjct: 822 EASGGREPSRDKERSRDRRKDVIVVVEGRPDVADSVPAPAPTPARSEVSKGKERE 876 >gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida 3523] Length = 693 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 40 GNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 G +Y K+ ++ S AFV+ G++ G+LPF EI Sbjct: 625 GQVYKGKIVKLLDS--GAFVNLLGSQDGYLPFSEI 657 >gi|226293090|gb|EEH48510.1| RNA exonuclease [Paracoccidioides brasiliensis Pb18] Length = 669 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 40/125 (32%) Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 ++ +P+ + + +N+ + R+RRR T + Sbjct: 29 ADKEPVPVPVAPLPASTPVPENVAPATAADEGPVRKRRRVDATTDTKPPLPSSTKTETKS 88 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +N D E + T H EN + VS PPVS + PI ++ Sbjct: 89 ENTRDVVVKERQENGNSTYHLYRENAQTLRSVTKAVSPPPVSRRSTSEVSQGKTPISSRS 148 Query: 717 RWWKR 721 K Sbjct: 149 DTVKP 153 >gi|302693481|ref|XP_003036419.1| hypothetical protein SCHCODRAFT_254872 [Schizophyllum commune H4-8] gi|300110116|gb|EFJ01517.1| hypothetical protein SCHCODRAFT_254872 [Schizophyllum commune H4-8] Length = 472 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 8/183 (4%) Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 N + + + GV V++ + G V++ S +P+ Sbjct: 199 NYDDKLVSCIKRKCGV---VIVDPPSSSSEDGASNGRSVRSRGRKSRVFARTSPSPARST 255 Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + P PK + ++ +E K +++RR+R+PAT + + Sbjct: 256 RSRSRVGMSPMRPSPK----RKLNESDEEQEEVSDAEKPQQKRRKRQPATKASPSTSLKP 311 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 S + + + + + E + + P+ S Sbjct: 312 TSKS-SGSKPLTERKPKATPTKPRSRAAKAQQDEEEGGAATEVENNPPKRRGRPPGSKNK 370 Query: 713 VKK 715 K+ Sbjct: 371 PKE 373 >gi|255722373|ref|XP_002546121.1| hypothetical protein CTRG_00903 [Candida tropicalis MYA-3404] gi|240136610|gb|EER36163.1| hypothetical protein CTRG_00903 [Candida tropicalis MYA-3404] Length = 943 Score = 43.8 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 61/192 (31%), Gaps = 9/192 (4%) Query: 534 QKRATIVEY-EARFGVSINVVIGIE--LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 + TI + + +I L ++ ++ + V + Sbjct: 723 EMDDTIQQIVQEESKETIIKEPENHQELEPNQDNAQEHEMIEEVKECDPIVPIEEYIKRP 782 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 ++ ++ + + + +++ + I +R RR+ + D + Sbjct: 783 EEEVKVIQVKKPERAASTKKRVKEESIKKQKDTEAKPIERRHTIASRRQNSHDENKENKE 842 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + + +N S +N +L+E + T + + P S+ Sbjct: 843 TKDAKKRNRFSLLSFYSTYNSSSSNISLVEPTTNSSTNSTVTPKKKILEP------SNDA 896 Query: 711 PIVKKTRWWKRR 722 I+KK + ++R Sbjct: 897 NIMKKEQQQQKR 908 >gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] Length = 714 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 11/116 (9%) Query: 30 FESEHKKQIKGNIYLAKVTRVEPSLQ-AAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQA 88 E K GN YL KVTRVE AFV+ + G + ++P R+ Sbjct: 609 IEDVTKDLEVGNTYLGKVTRVE---NYGAFVELAPGKVGLVHIS-------KLPPELREN 658 Query: 89 LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANND 144 + ++ ++ + + G + E + + ++ Sbjct: 659 IFEKIKVSDLIPVKIVEFDQFGRPKLSRIDVTREEEKKLRETGGFYSQPEKEKKDE 714 >gi|308388888|gb|ADO31208.1| IgA1 protease [Neisseria meningitidis alpha710] gi|325129839|gb|EGC52646.1| IgA-specific serine endopeptidase [Neisseria meningitidis OX99.30304] gi|325136077|gb|EGC58687.1| IgA-specific serine endopeptidase [Neisseria meningitidis M0579] Length = 1827 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%) Query: 494 RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 + Q + A + R E + ++ ++ + E R Sbjct: 1030 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1088 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + V+A K + Sbjct: 1089 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1139 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664 E + T + +R R+RR P A+ NV Sbjct: 1140 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1198 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E A E + + + E+ + R RK Sbjct: 1199 QAELVRRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1257 >gi|300681006|sp|Q0CT11|CREB_ASPTN RecName: Full=Probable ubiquitin carboxyl-terminal hydrolase creB; AltName: Full=Carbon catabolite repression protein B; AltName: Full=Deubiquitinating enzyme creB; AltName: Full=Ubiquitin thiolesterase creB; AltName: Full=Ubiquitin-hydrolyzing enzyme creB; AltName: Full=Ubiquitin-specific-processing protease creB Length = 768 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 6/145 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P A +++ + K+ E + +E+T Sbjct: 553 KPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKERERQRRKEQEATRKE 612 Query: 629 RKRRRRRRRRRP------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 ++ R R +RR A + A + Q D ++ Sbjct: 613 QEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGRSGHGLSRLKRGSKSF 672 Query: 683 AHGFTENYDVSIPPVSTPEMESSNS 707 +H +++ D +P S P + NS Sbjct: 673 SHRLSKDKDTRVPSSSNPGVPDPNS 697 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 5/152 (3%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 +T P+ + + + ++ PK L+ ++ E+ K Sbjct: 538 THYEHTDTNSAPSIPKPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKE 597 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVID-----DSFDMYMEPSDITNHNLLENGAHGF 686 R R+RR+ + + + + + ++ D N ++ G Sbjct: 598 RERQRRKEQEATRKEQEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGR 657 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + + S + D V + Sbjct: 658 SGHGLSRLKRGSKSFSHRLSKDKDTRVPSSSN 689 >gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] Length = 526 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 43/178 (24%), Gaps = 21/178 (11%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P E+ Q Sbjct: 352 ASELFAIERLIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTA 411 Query: 619 IVSEESTGVIRKRRRRRRRRRPATD-------------HHDAGVVSDVSSIQNVIDDSFD 665 KRR + + + D + N +++ Sbjct: 412 EKKNSGGNNKPKRRFNSDNKNGKGENKSGKGGAGKPKGNRDGQARPNGKPSGNKPNNNQS 471 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +P N N + + P P ++ K + ++ + Sbjct: 472 GANKPGVNKNGNGGKPSGNR--------KPNSGKPAGAKPSNGKPSGNKPSGQRRKPR 521 >gi|325202504|gb|ADY97958.1| IgA-specific serine endopeptidase [Neisseria meningitidis M01-240149] Length = 1816 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 50/239 (20%), Gaps = 20/239 (8%) Query: 494 RSQSSVALSILRSVEEYLLQY----TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 + Q + A + R E + ++ ++ + E R Sbjct: 1019 KRQQAKAEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEK- 1077 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + V+A K + Sbjct: 1078 ---------EREAAELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAA 1128 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-----ATDHHDAGVVSDVSSIQNVIDDSF 664 E + T + +R R+RR P A+ NV Sbjct: 1129 ELSAKQRVGEEERRQTAQSQPQR-RKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQA 1187 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E A E + + + E+ + R RK Sbjct: 1188 QAELVRRQQEERKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERK 1246 >gi|225683726|gb|EEH22010.1| RNA exonuclease [Paracoccidioides brasiliensis Pb03] Length = 664 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 40/125 (32%) Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 ++ +P+ + + +N+ + R+RRR T + Sbjct: 29 ADKEPVPVPVAPLPASTPVPENVAPATAADEGPVRKRRRVDATTDTKPPLPSSTKTETKS 88 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +N D E + T H EN + VS PPVS + PI ++ Sbjct: 89 ENTRDVVVKERQENGNSTYHLYRENAQTLRSVTKAVSPPPVSRRSTSEVSQGKTPISSRS 148 Query: 717 RWWKR 721 K Sbjct: 149 DTVKP 153 >gi|33860623|ref|NP_892184.1| hypothetical protein PMM0063 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633565|emb|CAE18522.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 310 Score = 43.8 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 18/187 (9%), Positives = 45/187 (24%), Gaps = 2/187 (1%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 N+ ++E S + + + + S + + Sbjct: 112 RNRFNDDYNQFEDSDRPSRRFKPQDDDLEDDYMEARSQRRNISRAIPESAVSRRRPSLRE 171 Query: 592 KNIECVWQDEALLPIPKSE--SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 N + + + S ED + + S+ KR R + + + Sbjct: 172 SNQFENEEPKRRRNRSEDNRMSNEDRRASFGERRSSRSEIKRGSRPLSNQEVSRKSNNSS 231 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + D S+ N S ++ + + S + + Sbjct: 232 LKDASTSSNKPTRSSIRSQTSTEKVEDASFSTNINEVKKPRQARSSAASARSTSKNKTGR 291 Query: 710 DPIVKKT 716 + K Sbjct: 292 YTVGTKK 298 >gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 716 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98 G +Y KV + P AFV++ + G L EI D + L Sbjct: 628 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 675 Query: 99 DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 + + + + D +V QE E+ Sbjct: 676 EGDEIDVKLLDIDPKTGKFKLSRKVLLPRPERQERPEKKEK 716 >gi|302421452|ref|XP_003008556.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261351702|gb|EEY14130.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 841 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/168 (8%), Positives = 41/168 (24%), Gaps = 1/168 (0%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 ++ + + DK + +D ++ Sbjct: 605 DSRRQAEKEAKRDLKTYEQAVKNREKAIKERQKLADKRRKKAEKDTQKSEKEAGKAQAKS 664 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 ++ ++R+ +R + A D D + +PS+ Sbjct: 665 HTREQAQREAEAEQRRQEAEQRAKEAADREREAAERDGRPMPAHEAQQQQQQQQPSNEQC 724 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +N G + + E + + P ++ R+ Sbjct: 725 QADTDNTDRGREGSPSRGRTTTAEREARAIE-AKKPAKERKFCVLPRR 771 Score = 38.8 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 18/188 (9%), Positives = 44/188 (23%), Gaps = 19/188 (10%) Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 + + + E + + E+ K S+ + Sbjct: 603 DKDSRRQAEKEAKRDLKTYEQAVKNREKAIKERQKLADKRRKKAEKDTQKSEKEAGKAQA 662 Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + +++A ++R+ +R + A D D Sbjct: 663 KSHTREQAQREAEA-------------------EQRRQEAEQRAKEAADREREAAERDGR 703 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + +PS+ +N G + + E + + + Sbjct: 704 PMPAHEAQQQQQQQQPSNEQCQADTDNTDRGREGSPSRGRTTTAEREARAIEAKKPAKER 763 Query: 715 KTRWWKRR 722 K RR Sbjct: 764 KFCVLPRR 771 >gi|57900437|dbj|BAD87730.1| putative THO complex 2 [Oryza sativa Japonica Group] Length = 1843 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593 R E R G I L + IE+ + G + + + Sbjct: 1552 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1611 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + + + +SL S V +R RR +T H+ Sbjct: 1612 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1671 Query: 654 SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + N D + E+ ++ D S + ES +S Sbjct: 1672 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1731 Query: 709 SDPIVKKTRWWK 720 + K R Sbjct: 1732 ASKRRKIKRDQS 1743 >gi|118396776|ref|XP_001030725.1| hypothetical protein TTHERM_01026260 [Tetrahymena thermophila] gi|89285038|gb|EAR83062.1| hypothetical protein TTHERM_01026260 [Tetrahymena thermophila SB210] Length = 2822 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 78/640 (12%), Positives = 189/640 (29%), Gaps = 22/640 (3%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 D A+ +E Q V + + L++ + + + EE +N Sbjct: 612 EDDMAIYREYERQQAADRMNQRQSYLEQVELQKHYELKKSKSEESQTPKKEENQTAKGDN 671 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVT--TYLS 201 S V +D +K + K + + +E+ K + T + Sbjct: 672 AQPSQTLGVSSIRFQDSSQKQNVLFVQMNSKKLDDDIQMDEEEEDSIKKNKPTSENTEEN 731 Query: 202 LAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEI 261 A +V+ P + S+ N + + + G+I+ G+ + +I Sbjct: 732 QANSQNVIDP----TKQSSQYNNNYISDNPIIREIME-KYSPTKGLIITPEGSIVSPSKI 786 Query: 262 KRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREA 321 + + + + V E + ++ I + + + E Sbjct: 787 EE--KDHLIHLKPIGTDPQIDVVIERKVIEPLIEEKHISESDLNTPQKEKIVEEAQNNNN 844 Query: 322 KDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVII-----NQT 376 ++ + + + + ++D Q + S + Sbjct: 845 EEQQQGIDQDQSSKQAASNLADDGDEIQERKQEIDQTEQQAHKVSSANNLDRFNEDEEID 904 Query: 377 EALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKK-- 434 ++ V V G + + ++ Q E+I ++ ++ G++ + I +K Sbjct: 905 QSKVKSSVELGTNVDQANPQEIQNQVKSNTDEQIEKEDNVKQQEGIVENNPIQSSPEKPN 964 Query: 435 NNRSVEKKLKESLKKDRARVQVGAIS-NFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 N +E + K+D VG +S S + +++ KG Sbjct: 965 NIIELENAEIKENKQDSESQNVGVVSERLNHFMSSISNAQVGDRNKSSESNLK-KGFQKK 1023 Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 S S S + +++ L N+ S+ N++ + E + V V Sbjct: 1024 PSSSYSPSSHKKEIDQNLFSPKKANVNQFIPSE-PTKQENEEVKDQDQIEEKAEVKQEVK 1082 Query: 554 IGIE---LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + + +E ++ +V SD + + N + ++E ++ ++E Sbjct: 1083 VEEQQVDDEQADNKVEVIKIQDDHDSSQDEVSSDVKQIEVNHNEIEIKKEEQIIQSEQTE 1142 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 ++ +E I K + S++ + + + Sbjct: 1143 LKQEANQQESEQEQHIEIIKDQEDDDEEEDNKVEQKTEDSSNLQKQEVKSEQGLQAMQQE 1202 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 +N E + + E E D Sbjct: 1203 QKEEIKLQQQNTETVQDEIKNEVLETDKKIETEEKQQIKD 1242 >gi|109947448|ref|YP_664676.1| hypothetical protein Hac_0899 [Helicobacter acinonychis str. Sheeba] gi|109714669|emb|CAJ99677.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 415 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 49/182 (26%), Gaps = 3/182 (1%) Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596 +V+ E R V I A + K ++ K +++ + E Sbjct: 234 DALVKKEKRKEVRIEKREEKVDARENKQEIKQEAIKPSHKEPKKANQNTENATQQSIKEN 293 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + + +LE+ ++ +RR + R++ + Sbjct: 294 NISPKGTQESKNAPTLEEKNYQKAEKKLDATEERRRLKDERKKAKAEQRAREFEQRAREH 353 Query: 657 QNVIDDSFDMYME--PSDITNHNLLENGAHGFTENYDVSIPPVSTPEME-SSNSSSDPIV 713 Q + + + S++ + E + E E + Sbjct: 354 QEKDEAELEERRKALESNLKDERKKAKAEQRAREFEQRAREHQEKDEAELEERRKALESN 413 Query: 714 KK 715 KK Sbjct: 414 KK 415 >gi|167840765|ref|ZP_02467449.1| serine/threonine protein kinase [Burkholderia thailandensis MSMB43] Length = 520 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 3/156 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P + + + P+ D+ S D V ++ + Sbjct: 319 PSPHVAPPASPAQAQPREPAGDREAGAAEDGAQRAATSGSPDARRRDDADVGADAAAMRL 378 Query: 630 KRRRRRRRRRP--ATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R+ R P + + ++ S+ P + + E G Sbjct: 379 DVERARQSRPPLESQESQESASYRRGDSAPAAAERAGGASAAPPQQPPSTDDREAGPLRP 438 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ S+ P E P +T W RR Sbjct: 439 RADHAPSLSPSREHAGERDPLPPRPAAARTGWRDRR 474 >gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Saccoglossus kowalevskii] Length = 1091 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 3/128 (2%) Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 ++ S +++ E KS+ + + + R +R R + D Sbjct: 117 RSKSRERDHRRSKSKERDHRRSKSKERDHRRSKSKEHVHRRSKSRERDHKRSR--SRDRE 174 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME-S 704 + + + S + S E + P E + Sbjct: 175 NKRSETRPQERRRSRSKSKERRKSRSKSRERRQDRKSPSRIKEREHRAKTPTKNTETKIK 234 Query: 705 SNSSSDPI 712 + S P Sbjct: 235 KDKSGSPA 242 Score = 40.7 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 36/157 (22%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + + K S K +S S + + Sbjct: 126 RRSKSKERDHRRSKSKERDHRRSKSKEHVHRRSKSRERDHKRSRSRDRENKRSETRPQER 185 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + + RR+ + S I+ + + + A Sbjct: 186 RRSRSKSKERRKSRSKSRERRQDRKSPSRIKEREHRAKTPTKNTETKIKKDKSGSPALSK 245 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ +S + + +W RK Sbjct: 246 SKFSSLSPLTKELEQKRLEEEMQRRRERIEKWRLERK 282 Score = 38.0 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 10/101 (9%), Positives = 26/101 (25%), Gaps = 7/101 (6%) Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + + R RR + DH + + + + Sbjct: 114 DHRRSKSRERDHRRSKSKERDHRRSKSKERDHRRSKSKEHVHRRSKSRERDHKRSRSRDR 173 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + +E S + S + +++ +RR+ Sbjct: 174 ENKRSETR-------PQERRRSRSKSKERRKSRSKSRERRQ 207 >gi|198476743|ref|XP_001357465.2| GA17619 [Drosophila pseudoobscura pseudoobscura] gi|198137832|gb|EAL34535.2| GA17619 [Drosophila pseudoobscura pseudoobscura] Length = 5605 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 3/133 (2%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 D S + + +S+ D + S S ++ R RR Sbjct: 1468 ESPDYDDIPVSKIPRSANEDEKDPEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1527 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + D A S + + + P + ++ + S Sbjct: 1528 ANSEDGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPP---SPPPDSELDS 1584 Query: 699 TPEMESSNSSSDP 711 S N+ Sbjct: 1585 NKRRSSRNTQRKK 1597 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 8/130 (6%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I + + DS S + + +S Sbjct: 1468 ESPDYDDIPVSKIPRSANEDEKDPEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1527 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + +D + + G + + ++RR R + D + + DS + Sbjct: 1528 ANSEDGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPSPPPDSELDSNKR 1587 Query: 671 SDITNHNLLE 680 N + Sbjct: 1588 RSSRNTQRKK 1597 >gi|112382239|ref|NP_056101.5| synemin isoform B [Homo sapiens] gi|119622635|gb|EAX02230.1| desmuslin, isoform CRA_a [Homo sapiens] Length = 1253 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + +D Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + ++ + + + + + + D Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577 >gi|46125719|ref|XP_387413.1| hypothetical protein FG07237.1 [Gibberella zeae PH-1] Length = 1057 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 12/231 (5%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 +R + R+ + + + + D +Y K + E E + S+ Sbjct: 719 RLRITGKRLDHLERAFRKEESKKLSEDYAKQIEEDRKIYDQ-MKTQKLQESEQKHKESVE 777 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + + + S + + K D++ + + + K E Sbjct: 778 LKHRLSRLVPQYEEFRDSLHERRRDEFEKRRRDAERELEKQITQRKKEVRDRRLREKRER 837 Query: 612 LEDIQDNIVSEESTGVIRKRRR-RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 E ++ +EE ++ +R R R+ + E Sbjct: 838 EEKERELQEAEERAAREKEEQRIRDEARKEELAKLKEQREKERQETLEKAALQQRREDEA 897 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + A GF+ PE S+ + P+ +W +R Sbjct: 898 LARRKAEKAQAPAAGFSRA----------PERTESSEARRPMFGAGKWRER 938 >gi|14211720|gb|AAK57487.1|AF359284_1 desmuslin [Homo sapiens] Length = 1253 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + +D Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVY-----IGEDST 466 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + ++ + + + + + + D Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577 >gi|270004992|gb|EFA01440.1| hypothetical protein TcasGA2_TC030701 [Tribolium castaneum] Length = 18024 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 11/166 (6%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + + + D ++ + E +P P + E +Q E+ G Sbjct: 5707 KEEIQEKEIIQEKQHVEDKTILEQEEQPKPSVPSEEEMPKPSLPTEEQVQTTEEKLETKG 5766 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R+ T VV + +I+ +M +I ++ Sbjct: 5767 WRRGRKPEEVPESAETPQLKPTVVEEKPKQPKLIEKKEEMPWNKQEIVLKRTQKDKKEMV 5826 Query: 687 TENYDVS--IPPVSTPEMESSNSSSDPIVKK---------TRWWKR 721 E + P ++E + D KK TR W+R Sbjct: 5827 KEEQEQVVLKPVKKETKVEEVITKEDDKPKKDELVHTEDKTRGWRR 5872 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 59/243 (24%), Gaps = 13/243 (5%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 R + ++L+ E + T + + T++ E R + I Sbjct: 4952 RRVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQ 5011 Query: 554 IGIE----LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + +E+ V+ + + + Sbjct: 5012 AETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQ 5071 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS-----SIQNVIDDSF 664 + +ED + E +K R RRP D V S++ + Sbjct: 5072 KHVEDTTLLSLEEREKVTEKKEAETRGWRRPRKDDTSVERQKHVEDTTLLSLEEREKITQ 5131 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDV---SIPPVSTPEMESSNSSSDPIVKKTR-WWK 720 E + D S + + K+T+ W K Sbjct: 5132 KKEEETRGWRRPRKDDTSVERKHTTEDTTLLSREEQEKIKETKDAETRVEEEKETKPWRK 5191 Query: 721 RRK 723 RK Sbjct: 5192 PRK 5194 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 4/212 (1%) Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 Q I+ DV L + + + E +++ ++ E S + Sbjct: 4896 QRQTKEIVKEQIEDVQLKPSKIQSKEVEKLELE---KVDLKHRTKVVTGQKTEEISSLDR 4952 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + +K + +D +ED V + I K+ Sbjct: 4953 RVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQA 5012 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 R RRP + V + D + E + + Sbjct: 5013 ETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQK 5072 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723 + + +E ++ +TR W + RK Sbjct: 5073 HVEDTTLLSLEEREKVTEKKEAETRGWRRPRK 5104 >gi|260832782|ref|XP_002611336.1| hypothetical protein BRAFLDRAFT_73272 [Branchiostoma floridae] gi|229296707|gb|EEN67346.1| hypothetical protein BRAFLDRAFT_73272 [Branchiostoma floridae] Length = 784 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 57/231 (24%), Gaps = 27/231 (11%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK------------RATIVE 541 + I R++E + ++ D LL+ + T+ + Sbjct: 490 KEGQHGIGKIGRTLENIASAFRTPRTSAKSNKDDAEPLLDMEEGEGKGAASQSDSKTLTQ 549 Query: 542 YEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 ++ V L +++ ++ ++ D + D Sbjct: 550 LTHSSSGTLTEVTP---LPTPDQAVDRHLDMKNPSDSSLWRKRKHIPSVSDDSPAGEKDD 606 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 E +QD + RR R + + + + + Sbjct: 607 SGPQARLAGEKPGAVQDG-----------RNGNRRNRSQEREQGVEDNRRNRNDNDGALR 655 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 P+ ++ N E++D S ++ S Sbjct: 656 HADSYSANRPATLSTENEQSPSKQQQQESFDDSSEKKKGTKLTRRESGRQK 706 >gi|198436904|ref|XP_002121320.1| PREDICTED: similar to nuclear receptor corepressor [Ciona intestinalis] Length = 2299 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 46/139 (33%), Gaps = 1/139 (0%) Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + + + S+ + A +S+S + ++G ++++++ Sbjct: 776 PETTEAATLSTSHIRTRRITAALAAAATPEESQSAKRAVSGDSPVSTSGEPAEKKQKKNE 835 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 R+ + ++ ++ + + + + + + + + + PP Sbjct: 836 RKLKSHKNEKEAKTETGK-EQTKPRVEQTVDQTKKLESGDGKTTDSVDKSTPVEGAAPPA 894 Query: 698 STPEMESSNSSSDPIVKKT 716 S + + S I KK Sbjct: 895 SKSKPVNPKSEKLEIKKKD 913 >gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae 342] gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola At-22] gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55] gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae 342] gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola At-22] gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55] Length = 711 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 DY Q+ +L+ + Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 695 >gi|149037578|gb|EDL92009.1| rCG55466, isoform CRA_a [Rattus norvegicus] gi|149037579|gb|EDL92010.1| rCG55466, isoform CRA_a [Rattus norvegicus] Length = 333 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 41/160 (25%), Gaps = 3/160 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++ + ++ + + S+ E +D ++E Sbjct: 145 KAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKE 204 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R R R + A D D + + ++ + Sbjct: 205 ADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQ 264 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E + DP +K+R + + Sbjct: 265 KDRDRDKGKDRERRKSKNGEHT---RDPDREKSRDADKSE 301 >gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 687 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 590 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 639 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 DY Q+ +L+ + Sbjct: 640 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 674 >gi|218189603|gb|EEC72030.1| hypothetical protein OsI_04921 [Oryza sativa Indica Group] Length = 1792 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593 R E R G I L + IE+ + G + + + Sbjct: 1501 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1560 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + + + +SL S V +R RR +T H+ Sbjct: 1561 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1620 Query: 654 SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + N D + E+ ++ D S + ES +S Sbjct: 1621 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1680 Query: 709 SDPIVKKTRWWK 720 + K R Sbjct: 1681 ASKRRKIKRDQS 1692 >gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 20/96 (20%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109 DY Q+ +L+ + Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 696 >gi|261314344|ref|ZP_05953541.1| predicted protein [Brucella pinnipedialis M163/99/10] gi|261303370|gb|EEY06867.1| predicted protein [Brucella pinnipedialis M163/99/10] Length = 151 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 +A +K + + A E+ E + E+ RK R R Sbjct: 2 ETVETVEAPVVEAAPEEKPEKPARKPRARKTAKTEEAAEAVITAEAEEKPEKPARKTRTR 61 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 ++ A A +V + + + ++ T+ ++ Sbjct: 62 KKAVDEAPADEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEVKETVAAETQVETIAE 121 Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P + P + SS S D K++ WW+++ Sbjct: 122 PKSTEPVVTSSESE-DRKPKRSGWWQKK 148 >gi|326478012|gb|EGE02022.1| hypothetical protein TEQG_01062 [Trichophyton equinum CBS 127.97] Length = 1385 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 46/157 (29%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK K + + P+ + E +E +V E+ Sbjct: 897 EKPQDDSPPAEDVVKEVAPPEQPAVEPVAEEEPAASPTEEPKTAEEPTPQPAPVVEEKPV 956 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 I++ + P ++ + + + + + ++ + + + + + Sbjct: 957 EEIKEDPLPQAVEAPVSEDTASKPIIEEPAAVEDVPNAKAAEETAVESKSKSRSKERSKE 1016 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +++ STP E S KK + R Sbjct: 1017 RSKDKRHKKHRRSTPAEEPPRPSKSSGEKKPSSRRPR 1053 >gi|242776785|ref|XP_002478901.1| DNA ligase Cdc9, putative [Talaromyces stipitatus ATCC 10500] gi|218722520|gb|EED21938.1| DNA ligase Cdc9, putative [Talaromyces stipitatus ATCC 10500] Length = 860 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 37/145 (25%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + ++ Q V +DE P + + ++ + Sbjct: 41 RKEATTSEKAVAESKDTEGQDDVEINGDAPVAKDEPTSPTKGVKREQFVEAEESDSDIQS 100 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++R++ + RP + S +E Sbjct: 101 ANKRRKKNSKSPRPKKTAKEVLAERPSSPKIAKKASGEVTPVEEDIDEPAEEPSASEEED 160 Query: 687 TENYDVSIPPVSTPEMESSNSSSDP 711 E ++ + + ++ +DP Sbjct: 161 DEKPEIKKKQIEKIQATLKSTGNDP 185 >gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] Length = 735 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 13/106 (12%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLK-ESNIAQ 97 G +Y KV + P AFV++ + G L EI D + L E + Sbjct: 628 VGEVYKGKVRSIMPY--GAFVEFLPGKDGLLHISEI----------DWKRLETVEEAGIK 675 Query: 98 TDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 E + T S + + P E E N Sbjct: 676 EGDEIEVKLLEVDPKTGKFKLSRKVLLPKPEGYVERPERGERRDRN 721 >gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC BAA-895] gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895] Length = 722 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 20/96 (20%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 622 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 671 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109 DY Q+ +L+ + Sbjct: 672 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 707 >gi|222619755|gb|EEE55887.1| hypothetical protein OsJ_04544 [Oryza sativa Japonica Group] Length = 1620 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593 R E R G I L + IE+ + G + + + Sbjct: 1329 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1388 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + + + +SL S V +R RR +T H+ Sbjct: 1389 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1448 Query: 654 SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + N D + E+ ++ D S + ES +S Sbjct: 1449 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1508 Query: 709 SDPIVKKTRWWK 720 + K R Sbjct: 1509 ASKRRKIKRDQS 1520 >gi|156543856|ref|XP_001606820.1| PREDICTED: similar to CG33715-PD [Nasonia vitripennis] Length = 7697 Score = 43.4 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 58/641 (9%), Positives = 178/641 (27%), Gaps = 27/641 (4%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 ++AL E + Q+ + +++ + +E+ ++ + Sbjct: 1146 KRALSIERIVQQSKMKEPENNIKSESTISSTEIVSQELTVDGKELNTKSKDLPVINAPTN 1205 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKE---ERGNKGAAVTTYLSL 202 ++D GS + I ++ L V + + Sbjct: 1206 RLKIKDDIVGSGIQLKASELDYQHISNTSTSQTSLNVHLKSDDTWMDLLDEPITIDDDFD 1265 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLK-----EIARGLEVPAGMGVILRTAGASRT 257 + + I ++ T ++ + + + G +R Sbjct: 1266 RDISNNFKEEQETAKAIQQQKTKKEEQPQKQEPKKPKTKEPVTDKKGPAETVRPQNDDNM 1325 Query: 258 KIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKG 317 + +++ + + + + +K + + + +KG Sbjct: 1326 VEKSEKEIDNKETIQKCETTVEPEKKVSQNKKPKKQAVKIELGEKEINKEKHLNQDNKKG 1385 Query: 318 YREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTE 377 + D + + + ++Q++ + S+ + TE Sbjct: 1386 SKAQADEEEETQKEKTKKNELIKQEDKNNESEKQQIQIEKPKKPSEIQISKVEQALKHTE 1445 Query: 378 ALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNR 437 L ++ + ++ D ++ E+ +++ + ++ V + Sbjct: 1446 ELKGNEIKESKRLQKSNDVDQIENEKIQIKEKKSKKHQQKNEQTPPVEIQSSDSNNEKVI 1505 Query: 438 SVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQS 497 E+ ++++ K+D+ + S E +++ ++ E K I Sbjct: 1506 LKEEPVRQTAKRDK---HIKQDSK----EEKSEKLVANKQEPKKLDLESEKRREQIAKPE 1558 Query: 498 SVAL--SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ-----KRATIVEYEARFGVSI 550 + E+ + ++T + + + ++ I + E+R G S Sbjct: 1559 PQKDKSKPEKREEQEDEKEQPQKEDLNTQAPIAKVAKKEHFQVTRKEDIQKKESRKGKS- 1617 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + E V V +V + Q N E + + E+ + + Sbjct: 1618 QAKEEEIKEQENIKEETLKQVSQKVKADEQVTEEEQTKIKVLNRERIQKQESNQENFEEK 1677 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + + + +++ R+ + HD I+ + + + Sbjct: 1678 LNKREKPESREQVPKTKDHQQQESRKGKSQKQQAHD----DKPKEIETLEQELQKQESQY 1733 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + A D S S + + + Sbjct: 1734 EKLKEQETKKEEAQKQGSKEDESRKKESIIQKMEEITKKEG 1774 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 46/157 (29%), Gaps = 6/157 (3%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 IE + ++ + + + + +DE+ + +E+I +E Sbjct: 1718 EIETLEQELQKQESQYEKLKEQETKKEEAQKQGSKEDESRKKESIIQKMEEITKKEGPQE 1777 Query: 624 STGVI------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + + + ++ + + ++ + VI E S+ + Sbjct: 1778 QESKKGKSKKKQTKEDKPEEQKTMKEQPKKKESKNKNAKEQVIKQEELQKQESSNTELQD 1837 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + N T++ V + E S K Sbjct: 1838 EINNKKEPQTQDTKKEKCEVLVTDKEDSLKQVSKKQK 1874 >gi|325114097|emb|CBZ49655.1| f3f19.18, related [Neospora caninum Liverpool] Length = 877 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 22/198 (11%), Positives = 48/198 (24%), Gaps = 32/198 (16%) Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIPKSESLEDIQ 616 L + F+ + + V T + + + + + + ES + Sbjct: 677 LTPEEFHALRVLQAKRSVETAGRRPGAQKDDEEEHDRLLSLLSKTPGVEAGLDESEDPDS 736 Query: 617 DNIVSEESTGVI----------------RKRRRRRRRR--RPATDHHDAGVVSDVSSIQN 658 D EE ++R+ R R R A G S Sbjct: 737 DASSDEEPERERNSLFVSSTELEGLAGRKRRQARERNRLKEEAKMERKRGGKSAPWPFAK 796 Query: 659 VIDDSFDMYMEPSDITNHN-------------LLENGAHGFTENYDVSIPPVSTPEMESS 705 ++ + + H + A S + + Sbjct: 797 KQREAAEASLAADPSKKHKTVVTGNAPQKLKARNKPLAMVRQSRKLRDKKQQSVKQKLQN 856 Query: 706 NSSSDPIVKKTRWWKRRK 723 +KK++ + R+ Sbjct: 857 LKKQIKNLKKSQVGRPRR 874 >gi|115389692|ref|XP_001212351.1| ubiquitin carboxyl-terminal hydrolase 12 [Aspergillus terreus NIH2624] gi|114194747|gb|EAU36447.1| ubiquitin carboxyl-terminal hydrolase 12 [Aspergillus terreus NIH2624] Length = 757 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 6/145 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P A +++ + K+ E + +E+T Sbjct: 542 KPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKERERQRRKEQEATRKE 601 Query: 629 RKRRRRRRRRRP------ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 ++ R R +RR A + A + Q D ++ Sbjct: 602 QEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGRSGHGLSRLKRGSKSF 661 Query: 683 AHGFTENYDVSIPPVSTPEMESSNS 707 +H +++ D +P S P + NS Sbjct: 662 SHRLSKDKDTRVPSSSNPGVPDPNS 686 Score = 42.7 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 5/152 (3%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 +T P+ + + + ++ PK L+ ++ E+ K Sbjct: 527 THYEHTDTNSAPSIPKPAMAPPVPPIPETHSMPLSPKKSDLQSRKERAKEEKERKAAEKE 586 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVID-----DSFDMYMEPSDITNHNLLENGAHGF 686 R R+RR+ + + + + + ++ D N ++ G Sbjct: 587 RERQRRKEQEATRKEQEARARENQRREDAELKAALEASRASKADEDRRNQEGQKDRDPGR 646 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + + S + D V + Sbjct: 647 SGHGLSRLKRGSKSFSHRLSKDKDTRVPSSSN 678 >gi|195579882|ref|XP_002079788.1| GD21833 [Drosophila simulans] gi|194191797|gb|EDX05373.1| GD21833 [Drosophila simulans] Length = 1323 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 32/152 (21%), Gaps = 1/152 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ S + S + + N + + ++ R Sbjct: 1139 QRRRDNSTGRERNRENSSYDRERKRENSSYDRERNRESSYDKERKNRNALANDRQRKRDR 1198 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG-FTENYD 691 R R P ++ SS + + G E D Sbjct: 1199 SRSYERPPIRENSAPRERRVESSRSEKDSRRGERSSRNEKSDRGERSDRGERSDRGERSD 1258 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + K R R + Sbjct: 1259 RGEKSDRGERSDRGDRDKERNRAKERERDRDR 1290 >gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae NTUH-K2044] gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 711 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 611 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 660 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 DY Q+ +L+ + Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 695 >gi|72387327|ref|XP_844088.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62360247|gb|AAX80665.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800620|gb|AAZ10529.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1063 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 52/191 (27%), Gaps = 18/191 (9%) Query: 550 INVVIGIELADKLF----------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 I++ + + + + + + + + ++N Sbjct: 149 ISIYGDPVVTPDEYTTYIMNLQPFRVVRSEARHFVTSQAEQQKQAVRTVGGERNERTRGA 208 Query: 600 DEALLPIPKSESLEDIQDNIVSEE-------STGVIRKRRRRRRRRRPATDHHDAGVVSD 652 A L P + + + +G R RR R+R + D D Sbjct: 209 RSARLADPGDAADDGSRTPREGGSRAPRDGSQSGRDDSRGSRRFRKRQSADDDSKPARED 268 Query: 653 VS-SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 S + ++ D P N + ++ ++ + + + S D Sbjct: 269 DSGAPRDDSQSGRDGSRGPRSARNRQAHDAERKSSRDDDSRTVRDDNNFANDDNRSGRDE 328 Query: 712 IVKKTRWWKRR 722 + R + + Sbjct: 329 TRGRRRVREPQ 339 >gi|134097538|ref|YP_001103199.1| hypothetical protein SACE_0940 [Saccharopolyspora erythraea NRRL 2338] gi|133910161|emb|CAM00274.1| hypothetical protein SACE_0940 [Saccharopolyspora erythraea NRRL 2338] Length = 289 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 30/150 (20%), Gaps = 4/150 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 D P+ + E + A + + ++ + Sbjct: 123 EAATKRRPLPKLPPEDGDTPTRKQAAEGRAKRSADRDARRDARRDAKLAAGSAKMAEREA 182 Query: 629 RKRR----RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ +R R P G D + Sbjct: 183 KRPPEGGAKRPPERDPRRGAAKRGDERGAGRPARDGDPRARGQAPGRGARGADPRGRAGD 242 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 E ++PP + + P K Sbjct: 243 PRAEREGRAVPPGRGAQRPAPGRGRPPEPK 272 >gi|317145983|ref|XP_001821209.2| GPI-anchored cell surface glycoprotein [Aspergillus oryzae RIB40] Length = 962 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 7/184 (3%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +RA I E I V + + I++ S + ++ + + A S + Sbjct: 687 HERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAKSSKPD 746 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + P S ++ +E + R+R+ P + Sbjct: 747 -RPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSSEKPK 805 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE------NYDVSIPPVSTPEMESSNS 707 + +I ++ PS N + S P +P+ SSN Sbjct: 806 TLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTASSNP 865 Query: 708 SSDP 711 ++ P Sbjct: 866 TTTP 869 Score = 37.6 bits (85), Expect = 6.8, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 7/182 (3%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVN------TGHKVGSDSQAPSYDKNIE 595 E + + E K +++ V + S + + Sbjct: 682 MEDVYHERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAK 741 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 D + + I S +ST + +RRR+ S Sbjct: 742 SSKPDRPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSS 801 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + T + S S+ S P Sbjct: 802 EKPKTLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTA 861 Query: 715 KT 716 + Sbjct: 862 SS 863 >gi|297198371|ref|ZP_06915768.1| circumsporozoite protein [Streptomyces sviceus ATCC 29083] gi|197714429|gb|EDY58463.1| circumsporozoite protein [Streptomyces sviceus ATCC 29083] Length = 480 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 38/146 (26%), Gaps = 4/146 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + ++ + D + + S + + Sbjct: 21 TRPDSDGQRADDSRTRPGGNEQGTDDTDDRPGGNRQGADDNRTRPSGNERGTDDTDARPG 80 Query: 626 GVI---RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 G R RR TDH DA SD ++ EP + Sbjct: 81 GNRQGAEDNRTRRGGNEQGTDHTDARPDSDGQGAEDNRTRPSRNRHEPDGTGARQPQDTD 140 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSS 708 AH ++ D P + P S N + Sbjct: 141 AH-QAQDSDAHEPQRNDPRQSSGNHA 165 >gi|311272727|ref|XP_003133562.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Sus scrofa] Length = 527 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/182 (8%), Positives = 38/182 (20%), Gaps = 17/182 (9%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I + + + + +D S Sbjct: 346 QGNPRSKEVDKLIRRQQTNDRKQEERRPEPRHQETRTERERRSEKPRDRDSRDPATKHSS 405 Query: 613 EDIQDNIVSEEST-----------------GVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + + + S +K+R RR +H S+ + Sbjct: 406 DRGVPSERNSYSRAMNDRDYEMHIDVEHKHRDPKKKRGERRNSFSENEHRHRNRDSENFT 465 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + ++ + +NGA E + K+ Sbjct: 466 RKERSNSREKSKKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRKEKSPTKQ 525 Query: 716 TR 717 + Sbjct: 526 KK 527 >gi|297301584|ref|XP_001093998.2| PREDICTED: uncharacterized protein C10orf12 [Macaca mulatta] Length = 1556 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/164 (9%), Positives = 37/164 (22%), Gaps = 2/164 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++ + + + P + Sbjct: 1390 PKAEVQSKRKRTEGSSPPDGKNKGPAVKASKEKHADGVTKTPAAKRPAARDRSSQPPKKT 1449 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 S + V ++ + P+ + SI + S+ + + Sbjct: 1450 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGASESS-SRPQK 1508 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRWWKRRK 723 + + P TPE ++ K + KRR+ Sbjct: 1509 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDSSHGKRRR 1552 >gi|194906985|ref|XP_001981464.1| GG11596 [Drosophila erecta] gi|190656102|gb|EDV53334.1| GG11596 [Drosophila erecta] Length = 955 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 35/164 (21%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 F + + + + Q S + Sbjct: 593 RNRFPLSPIRGRGSPSGDRRRQQRSRSQNRRQDSPSQRRQMSPGRKRQDSPGRKRPSSTD 652 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 + ++ R+R + D+ S I DS + Sbjct: 653 RKRRDSPERKREDSNDRKREASPKRKDSANRKMEDSQDKKIQDSSKQEDTAGKKRGDSPS 712 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + D + +P + P K+ RR+ Sbjct: 713 KKRKDSDKKRQDSPVKRQESPGRKRRRRKDSPERKRRDSPDRRR 756 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 31/106 (29%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + K+ D + + + P + + + S Sbjct: 671 REASPKRKDSANRKMEDSQDKKIQDSSKQEDTAGKKRGDSPSKKRKDSDKKRQDSPVKRQ 730 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 R+RRRR+ P D+ S +S + SD Sbjct: 731 ESPGRKRRRRKDSPERKRRDSPDRRRKDSPARRRQESSGRRRQDSD 776 >gi|189523697|ref|XP_001341635.2| PREDICTED: titin [Danio rerio] Length = 28836 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 67/222 (30%), Gaps = 11/222 (4%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 ++ + + + L+ ++ L N K+A IV E ++ ++ Sbjct: 6232 TLKKVTKRSKEHQEDRDLISLKKAIKIHHEEPSTEEEALLRNVKKAEIVADEMKYSEAVT 6291 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + + + K+ + K++ + + + + + Sbjct: 6292 ----EVKLSSSYEVTEDTWSYETSTEAEKLSKCEEKKKEYKDVREKKEMTLEMGVKEDKF 6347 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + I E+ + + ++ R PA +A + V + P Sbjct: 6348 KSKKETKIPKEKEPEIPQPTLKKVIRSIPAEKEKEAVKLKPVEKPDKAV-------AGPQ 6400 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 +N + ++ + P+S ++E + + Sbjct: 6401 KDSNIDRSKDSIGVQKHERLLKDEPLSKKKIEVAATDQKAEE 6442 >gi|229076791|ref|ZP_04209703.1| hypothetical protein bcere0024_55620 [Bacillus cereus Rock4-18] gi|228706353|gb|EEL58614.1| hypothetical protein bcere0024_55620 [Bacillus cereus Rock4-18] Length = 507 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 13/165 (7%), Positives = 34/165 (20%), Gaps = 3/165 (1%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F IE+ + + + + + + E V Sbjct: 92 EFKIEETRRKAKEEARKQAEAEARRKVEEEARKQAEVEARRKVEEEAKKQAELEARRKVE 151 Query: 622 EESTGV---IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 EE+ +R+ ++ A + Sbjct: 152 EEAKKQAEVEARRKAEEEAKKQAELEARRKAEEEAKKQVEAEAQRKAEKEAKKQAETEAR 211 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + ++E KK ++R+ Sbjct: 212 RKVEEEARKQAELEACRKAEEKKLEEVRKRRLEEEKKIEEAQKRQ 256 >gi|308457811|ref|XP_003091269.1| hypothetical protein CRE_26828 [Caenorhabditis remanei] gi|308257606|gb|EFP01559.1| hypothetical protein CRE_26828 [Caenorhabditis remanei] Length = 616 Score = 43.4 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 9/120 (7%), Positives = 28/120 (23%), Gaps = 3/120 (2%) Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 +L K E L + + +++ + + + R + + + Sbjct: 128 PVLTEKKKEILRLVNEKAARDKAAKEKADQEKADQERDAKEKADKEKADKEKADKEK--- 184 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + E + + + + D K+ R Sbjct: 185 SDKEKADKEKSDKEKADKEKADKEKADKEKADKEKADKEKADKEKADKDKAAKEKVERDR 244 Score = 41.1 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 11/138 (7%), Positives = 38/138 (27%), Gaps = 4/138 (2%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I + +A + K +D + +++ + E E + + + + Sbjct: 136 EILRLVNEKAARDKAAKEKADQEKADQERDAKEKADKEKA----DKEKADKEKSDKEKAD 191 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +++ + + + D A + D + + LL+ Sbjct: 192 KEKSDKEKADKEKADKEKADKEKADKEKADKEKADKEKADKDKAAKEKVERDRELLKLVN 251 Query: 684 HGFTENYDVSIPPVSTPE 701 + ++ + Sbjct: 252 YKADKDRIAKEKKEADDR 269 >gi|221481034|gb|EEE19446.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2733 Score = 43.4 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 7/177 (3%) Query: 554 IGIELADKLF--YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPI 606 + F +E+ + T ++V S+ + + Sbjct: 1845 ANEGRRENHFCAAVERPPESARRERGTRYEVQRRSRESQARRVSVEPGESRNPLPCSTEN 1904 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 +S S EE T +R++ RR+ A A S S + + Sbjct: 1905 GRSSSPRGPTLRSSGEERTHTDERRKKTLTRRQKALLEQKAARESGGESRAEREETACTD 1964 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E E+ S E D + TR KRRK Sbjct: 1965 SQKRGGRNADDSREKQRGDAEESEAASEDSEDETSEEDDLKDEDFQLGSTRRTKRRK 2021 >gi|156543124|ref|XP_001605583.1| PREDICTED: similar to tpr repeat nuclear phosphoprotein [Nasonia vitripennis] Length = 1215 Score = 43.4 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 48/182 (26%), Gaps = 5/182 (2%) Query: 539 IVEYEARFGVS-INVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 + + E + + I E+ + + +EK S + K E Sbjct: 860 MRQMEEQRKMEEIRRQKEEEMLQKRQEY-VEKTKSALVFGEMP-NEKSGKKGSKKGKTGE 917 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + E ++ ++S ++ R + +RR + +G S Sbjct: 918 YISDSSGSGNEVDGAEEESSREKKQRKKSNKTKERKPRGKGKRRKGIESGGSGDDKPKSK 977 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + S T + D S E+ S + S + Sbjct: 978 RGKKSGARKEKSQNKSIKECTVPKSRIISKETISTDESESDNERSEVRSGDESDTGAPRG 1037 Query: 716 TR 717 R Sbjct: 1038 KR 1039 >gi|297697561|ref|XP_002825920.1| PREDICTED: synemin-like [Pongo abelii] Length = 1253 Score = 43.4 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 42/171 (24%), Gaps = 5/171 (2%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G ++N + + + + + Q D++ + E+ Sbjct: 412 ENSYGKTVNSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYIAEDSTIARES 471 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + ++ + T+ + + + + D Sbjct: 472 YQDRR-----DKVAAGASESTWSNERTVILGKKTEVKATTEQERNRPETIRTKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + E ++ L + + S + V Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKAKEKDSPKEKSVREREV 577 >gi|238019394|ref|ZP_04599820.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748] gi|237864093|gb|EEP65383.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748] Length = 632 Score = 43.4 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 11/57 (19%) Query: 28 LDFESEHK------KQIKGNIYLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77 L+ E + K G+ Y V ++ P AFVD GG G L +I Sbjct: 447 LEVERQAKLAEALKNINVGDNYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499 >gi|221508645|gb|EEE34214.1| epidermal growth factor, putative [Toxoplasma gondii VEG] Length = 2869 Score = 43.4 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 16/146 (10%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 + D+ E D + EE G ++ R R P+ + Sbjct: 1549 GEERDEDEPQEERQDDR--------NPEKRKHRTSEDEEMLGTGKQVRPAENSRSPSVRY 1600 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 + G ++ + + + + VS + Sbjct: 1601 GETGATRKDGKVEEKKPRGEEKEERNERKDTKRRAPEASEPASISSSVSPEKEGDRKEAH 1660 Query: 705 SNSSSDPIVKKT--------RWWKRR 722 ++ + ++ WW R Sbjct: 1661 ADGNKAKAQRRKAENLSVVESWWDER 1686 >gi|238491468|ref|XP_002376971.1| GPI-anchored cell surface glycoprotein, putative [Aspergillus flavus NRRL3357] gi|220697384|gb|EED53725.1| GPI-anchored cell surface glycoprotein, putative [Aspergillus flavus NRRL3357] Length = 956 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 7/184 (3%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +RA I E I V + + I++ S + ++ + + A S + Sbjct: 681 HERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAKSSKPD 740 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + P S ++ +E + R+R+ P + Sbjct: 741 -RPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSSEKPK 799 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE------NYDVSIPPVSTPEMESSNS 707 + +I ++ PS N + S P +P+ SSN Sbjct: 800 TLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTASSNP 859 Query: 708 SSDP 711 ++ P Sbjct: 860 TTTP 863 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 7/182 (3%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVN------TGHKVGSDSQAPSYDKNIE 595 E + + E K +++ V + S + + Sbjct: 676 MEDVYHERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAK 735 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 D + + I S +ST + +RRR+ S Sbjct: 736 SSKPDRPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSS 795 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + T + S S+ S P Sbjct: 796 EKPKTLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTA 855 Query: 715 KT 716 + Sbjct: 856 SS 857 >gi|123452668|ref|XP_001314290.1| hypothetical protein [Trichomonas vaginalis G3] gi|121896585|gb|EAY01732.1| hypothetical protein TVAG_108890 [Trichomonas vaginalis G3] Length = 1500 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 36/125 (28%) Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 +D I E + + ES+ + R++RR + Sbjct: 1075 KDVPDTDIYMKERRKTSAERKQRRESSSSRKPSVERKQRRNSFEMESSSSRRPSQERKSR 1134 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + D + + +N + E +SSS+ I K ++ Sbjct: 1135 RLSTENDSSSSNLVRKHSSKKKNEMKSSSSRKPSVERKQRRDSFEMESSSSNLIRKPSQE 1194 Query: 719 WKRRK 723 K R+ Sbjct: 1195 RKSRR 1199 >gi|83769070|dbj|BAE59207.1| unnamed protein product [Aspergillus oryzae] Length = 759 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 7/184 (3%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +RA I E I V + + I++ S + ++ + + A S + Sbjct: 484 HERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAKSSKPD 543 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + P S ++ +E + R+R+ P + Sbjct: 544 -RPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSSEKPK 602 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE------NYDVSIPPVSTPEMESSNS 707 + +I ++ PS N + S P +P+ SSN Sbjct: 603 TLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTASSNP 662 Query: 708 SSDP 711 ++ P Sbjct: 663 TTTP 666 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 7/182 (3%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVN------TGHKVGSDSQAPSYDKNIE 595 E + + E K +++ V + S + + Sbjct: 479 MEDVYHERAKIKAREEARQKGITVDRSMSVPQIEALIDRHSKSGSSQSSETPAPAPASAK 538 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSE-ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 D + + I S +ST + +RRR+ S Sbjct: 539 SSKPDRPAGSRKRRRTEPAIPSEAPSTNDSTTESTHKPKRRRKNTVGASAPTPTETEPSS 598 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + T + S S+ S P Sbjct: 599 EKPKTLKLKLIFSKRELPATPSASNTTNTSAKPKKRPHSEIETDGDNAASNGPSKSPKTA 658 Query: 715 KT 716 + Sbjct: 659 SS 660 >gi|237832747|ref|XP_002365671.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|211963335|gb|EEA98530.1| hypothetical protein, conserved [Toxoplasma gondii ME49] Length = 2869 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 16/146 (10%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 + D+ E D + EE G ++ R R P+ + Sbjct: 1549 GEERDEDEPQEERQDDR--------NPEKRKHRTSEDEEMLGTGKQVRPAENSRSPSVRY 1600 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 + G ++ + + + + VS + Sbjct: 1601 GETGATRKDGKVEEKKPRGEEKEERNERKDTKRRAPEASEPASISSSVSPEKEGDRKEAH 1660 Query: 705 SNSSSDPIVKKT--------RWWKRR 722 ++ + ++ WW R Sbjct: 1661 ADGNKAKAQRRKAENLSVVESWWDER 1686 >gi|296811606|ref|XP_002846141.1| translation initiation factor eIF3a [Arthroderma otae CBS 113480] gi|238843529|gb|EEQ33191.1| translation initiation factor eIF3a [Arthroderma otae CBS 113480] Length = 1084 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 16/301 (5%) Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCK 488 M+++++ + +LK+ L++ + ++ +S L E+ R+R+ ++ Sbjct: 660 RMKDEQDRIR-QAELKKQLEELKTGIKGIDVSEIDLEELDSNRLRA--MKLAQLEKEKND 716 Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 IR + + R+ L++ + D+ +Y QK T+ E + Sbjct: 717 LNERIRVTAKRFDHLERAYRREELKHLPEDYERQKKHDLEVYER-QKAETLAAAELKHKE 775 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 + + + F K S + + ++ K + V + + + + Sbjct: 776 DVALKHRLSRLVPHFNKFKHSVTEKRHEEFERRRKAAEREFEAKKKQRVKEVQERIKRER 835 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 E + + E + R R R + + Q I D Sbjct: 836 MEREAEERRKREEAEREEREEQERAARDEERRRKLAEEKAAREE----QRRILDEKAAIQ 891 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK--------KTRWWK 720 + + L G + PP + E ++S+ + T W Sbjct: 892 KQREEEVEKRLAAKRAGLADPRLSRAPPTAVAESSRTDSTERTAPRLNLTSRPGGTSWRD 951 Query: 721 R 721 R Sbjct: 952 R 952 >gi|149639735|ref|XP_001515527.1| PREDICTED: similar to KIAA1604 protein [Ornithorhynchus anatinus] Length = 921 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 39/148 (26%), Gaps = 3/148 (2%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQ---APSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 +E+ + + + P + V + + +D + Sbjct: 762 KMERRGQETRAEEERNPEKNSERNVRDPHRRDGSKHVPDRDVSSDRNSHSTGKDRDRDKH 821 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 ++ + +++R RR +++ S + + + ++ E Sbjct: 822 ADFADKYGESKKKRGERRNSFSENERPRHRSKDRENLSRRKERSKSRERTRNDSSPQGEE 881 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSS 708 + +E S ES Sbjct: 882 DRYRNGSERRSGKPNRHSEQSRESRKHQ 909 >gi|221508627|gb|EEE34196.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1575 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 33/155 (21%), Gaps = 7/155 (4%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 +D++ P E + + D Sbjct: 246 VKADTDAPGAVPWQHADAKKPRAPGKHEVDQKSGEAKADADNRPAGDASGGASQSGQHAA 305 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 RRR + + ++ + D D +G Sbjct: 306 ETDESHRRREKTKKEHSDEGALLRPKKKRGDKKADEGDESPTKKRKERPGEEGDGKTAKE 365 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +N + + P+ ++ R KRR Sbjct: 366 QNKAREGGGL-------EGGAKKPLSRQKRLKKRR 393 >gi|221506970|gb|EEE32587.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 2731 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 7/177 (3%) Query: 554 IGIELADKLF--YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPI 606 + F +E+ + T ++V S+ + + Sbjct: 1843 ADEGRRENHFCAAVERPPESARRERGTRYEVQRRSRESQARRVSVEPGESRNPLPCSTEN 1902 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 +S S EE T +R++ RR+ A A S S + + Sbjct: 1903 GRSSSPRGPTLRSSGEERTHTDERRKKTLTRRQKALMEQKAARESGGESRAEREETACTD 1962 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + E E+ S E D + TR KRRK Sbjct: 1963 SQKRGGRSADDSREKQRGDVEESEAASEDSEDETSEEDDLKDEDFQLGSTRRTKRRK 2019 >gi|81294210|gb|AAI07917.1| Ctr9 protein [Rattus norvegicus] Length = 493 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 34/143 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K SD + D+ S+E + Sbjct: 344 DKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDS 403 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R+RRR +D+ A S +DS + + Sbjct: 404 DSDQPSRKRRRSGSEQSDNESAQSGRSPSGGSENENDSRPVSPSAESDHESEQGSDNEGS 463 Query: 686 FTENYDVSIPPVSTPEMESSNSS 708 + + S P S E S Sbjct: 464 GQGSGNESEPEGSNNEASDRGSE 486 >gi|326473167|gb|EGD97176.1| light-harvesting complex alpha subunit [Trichophyton tonsurans CBS 112818] Length = 1470 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 46/157 (29%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK K + + P+ + E +E +V E+ Sbjct: 982 EKPQDDSPPAEDVVKEVAPPEQPAVEPVTEEEPAASPTEEPKTAEEPTPQPAPVVEEKPV 1041 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 I++ + P ++ + + + + + ++ + + + + + Sbjct: 1042 EEIKEDPLPQAVEAPVSEDTASKPIIEEPAAVEDVPNAKAAEETAVESKSKSRSKERSKE 1101 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +++ STP E S KK + R Sbjct: 1102 RSKDKRHKKHRRSTPAEEPPRPSKSSGEKKPSSRRPR 1138 >gi|91088841|ref|XP_970807.1| PREDICTED: similar to enoki mushroom CG11290-PA [Tribolium castaneum] gi|270012338|gb|EFA08786.1| hypothetical protein TcasGA2_TC006477 [Tribolium castaneum] Length = 2385 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 39/154 (25%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ K+ ++Q K A ++S + + + Sbjct: 1100 ETADIVIPQPEKIIIETQQGVKLKKGRKRKISTAPKTPKVAKSEPKTPQVTPNNPTKEEV 1159 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RRR RP+ + + +N D + + Sbjct: 1160 EITSSGRRRTRPSKYNETTFADVKPKNHENNKRKRNDTSEPEVAEKKMKVEPEVKLVKCD 1219 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P T + + + V RW +RR Sbjct: 1220 EEVAKTQPKETQRPKRNVGGNKEKVAGERWSQRR 1253 >gi|297458228|ref|XP_001249355.2| PREDICTED: CWC22 spliceosome-associated protein homolog [Bos taurus] gi|297471567|ref|XP_002685317.1| PREDICTED: KIAA1604 protein-like [Bos taurus] gi|296490729|gb|DAA32842.1| KIAA1604 protein-like [Bos taurus] Length = 940 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 3/162 (1%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I K + + + ++ + + + + + S Sbjct: 772 IRKQEINDRKQEERRPEHRHQETRTERERRSEKPRERDSRGSGTTYTSDRGIPSARNSCS 831 Query: 625 TGVIRKRRRRRRR-RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 V + + R R D + S + D + + +N Sbjct: 832 RAVHDRDQEARVDLARNHGDPEKKRERRNSFSENEHRHRNRDSENFRRRDRSKSREKNKK 891 Query: 684 HGFTENYDVSIPPVSTPEMESSN--SSSDPIVKKTRWWKRRK 723 H + + D + + E + S KK++ +R K Sbjct: 892 HSGSRSEDDRYQNGAERQWEKPSRYSEQSGESKKSQDRRREK 933 Score = 37.6 bits (85), Expect = 6.8, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 2/153 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + + S ++ D + + Sbjct: 788 EHRHQETRTERERRSEKPRERDSRGSGTTYTSDRGIPSARNSCSRAVHDRDQEARVDLAR 847 Query: 626 GVIRKRRRRRRRRR-PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++R RR +H S+ ++ + + +NGA Sbjct: 848 NHGDPEKKRERRNSFSENEHRHRNRDSENFRRRDRSKSREKNKKHSGSRSEDDRYQNGAE 907 Query: 685 GFTENYDV-SIPPVSTPEMESSNSSSDPIVKKT 716 E S + + + P +K Sbjct: 908 RQWEKPSRYSEQSGESKKSQDRRREKSPTKQKK 940 >gi|297598187|ref|NP_001045197.2| Os01g0916800 [Oryza sativa Japonica Group] gi|255673998|dbj|BAF07111.2| Os01g0916800 [Oryza sativa Japonica Group] Length = 1682 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 7/192 (3%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP--VQALVNTGHKVGSDSQAPSYDKN 593 R E R G I L + IE+ + G + + + Sbjct: 1421 REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA 1480 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + + + +SL S V +R RR +T H+ Sbjct: 1481 EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD 1540 Query: 654 SSIQ-----NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + N D + E+ ++ D S + ES +S Sbjct: 1541 DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS 1600 Query: 709 SDPIVKKTRWWK 720 + K R Sbjct: 1601 ASKRRKIKRDQS 1612 >gi|308459401|ref|XP_003092021.1| hypothetical protein CRE_29215 [Caenorhabditis remanei] gi|308254461|gb|EFO98413.1| hypothetical protein CRE_29215 [Caenorhabditis remanei] Length = 1005 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 39/146 (26%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q + S + S N + E + + ++ V I Sbjct: 618 RAPQKARSPRAVNDVASSSSSGSNNADPESAQEPMDAPEAAAQEPEVAPAPVDVADVPSI 677 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + +RRRR + + + D+ + P + Sbjct: 678 ARSTKRRRRTAGNGRAGNGRLHNVDPEPAPERMDAPEPIDAPEPMDAPEAAAQEPEEAAA 737 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714 DV+ P T S S+ P ++ Sbjct: 738 PVDVATPAPPTRRRLQSASNGQPTMR 763 >gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis z3032] gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis z3032] Length = 711 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 614 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 663 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 DY Q+ +L+ + Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 698 >gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 614 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 663 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 DY Q+ +L+ + Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 698 >gi|297722687|ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group] gi|255675038|dbj|BAH92435.1| Os03g0840400 [Oryza sativa Japonica Group] Length = 1632 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 14/169 (8%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 E D +G P ++ + + S Q + + + +++ Sbjct: 1232 DQECNDPENQYHEGEPYDHVIEQEPERDARETGTSMKLRNRRKLQKDGIPEHTADDIMDE 1291 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 S+E R +++ + + + S S D +E S Sbjct: 1292 DFGEPPSDEQDNDSGDEYTARGKQKGRRKSREKNINKEPSRG--TKRTSGDSTIEESQKQ 1349 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ A + V PE KK RRK Sbjct: 1350 KLQKNKSKASSGGQKKTSKDSSVEQPE------------KKLTHRIRRK 1386 >gi|237831139|ref|XP_002364867.1| hypothetical protein TGME49_055390 [Toxoplasma gondii ME49] gi|211962531|gb|EEA97726.1| hypothetical protein TGME49_055390 [Toxoplasma gondii ME49] Length = 2731 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 7/177 (3%) Query: 554 IGIELADKLF--YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA----LLPI 606 + F +E+ + T ++V S+ + + Sbjct: 1843 ADEGRRENHFCAAVERPPESARRERGTRYEVQRRSRESQARRVSVEPGESRNPLPCSTEN 1902 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 +S S EE T +R++ RR+ A A S S + + Sbjct: 1903 GRSSSPRGPTLRSSGEERTHTDERRKKTLTRRQKALLEQKAARESGGESRAEREETACTD 1962 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + E E+ S E D + TR KRRK Sbjct: 1963 SQKRGGRSADDSREKQRGDVEESEAASEDSEDETSEEDDLKDEDFQLGSTRRTKRRK 2019 >gi|326478881|gb|EGE02891.1| DNA ligase [Trichophyton equinum CBS 127.97] Length = 889 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 4/153 (2%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F + S + + K + PI + +I Sbjct: 33 FSSKSSSSKNDEAKEKTDEAVEETPQTPRKQVGRAGSKRTPPPIDDGDVDGEILSGGEKS 92 Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ES + +R++R+ + +D S N S Sbjct: 93 ESISPVTRRQKRKEAVTTKGDEESDEQPVTKRRRKSPKSNTKTKSPINGGCSKAAAADEQ 152 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 E S S E+E + P Sbjct: 153 SPANIKSDAEPELSSAEENSASEIEEDDIDDKP 185 >gi|189239270|ref|XP_001810058.1| PREDICTED: similar to transcriptional regulator ATRX (X-linked helicase II) [Tribolium castaneum] Length = 1848 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 39/156 (25%), Gaps = 1/156 (0%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E K S+S A D+ I E + + Sbjct: 689 LEIKRKNTKSKENPEKDSSESTASDLDEEINHSPVSEVEKNQDLAVGNSEEMAEDALNLL 748 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + +++ D + + + ++ N +NG+ Sbjct: 749 NSDKDDSDDKEEAPEENSENSDKEKNGK-ETAEKASEKDPTNETNENEQDNTEKNDNGSE 807 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 ++ + E S+ + K RW K Sbjct: 808 KTNDDQSEKEANDKSDEGSKSDENKIEEKSKKRWRK 843 >gi|326931095|ref|XP_003211671.1| PREDICTED: putative sodium-coupled neutral amino acid transporter 10-like [Meleagris gallopavo] Length = 1147 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 24/231 (10%), Positives = 61/231 (26%), Gaps = 9/231 (3%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++++ + R EE + A + + K + E E I V Sbjct: 424 VKTEEVGMEHLER--EEDRIDQDAVKLPEQNPAVEEAEDDRHKPKLLDEKEEMEQPQIKV 481 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + E+G P + + G ++ V DE ++ + + Sbjct: 482 ----PMEVPETDEERGKPEEKVQLDRPDQGIALPMGEAHRHEPPVPHDEVVVDMGRERED 537 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R P + V+++ + + ++ P Sbjct: 538 SVENKQALGGDEGNAPKAAPREPAELLPQKEAQGKEVIAENRGTEKPVK---NLKNAPEV 594 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + ++ + +KT+ RK Sbjct: 595 SVPKDGRPPYKEQEPGRAAPDAKARAAVLAGEKSAEAAGDGEKTKLQFPRK 645 >gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] Length = 529 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 14/146 (9%), Positives = 35/146 (23%), Gaps = 1/146 (0%) Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + + ++ P E ++ + +R R R Sbjct: 358 PRDEKNFEDVERLVQKEIPRLENLLQTDAPAPEEATAEAPAKADDKPKFADKPKRTRSRS 417 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDM-YMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R+ D V++ + D+ +EP ++ P Sbjct: 418 RKSDAPRADKAAAEQVTADKPAEDNQPQAPKVEPKAEPTSEPAPQAEVAPAQDAPAQDAP 477 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722 + ++D + +R Sbjct: 478 SQNDRRSNRGGNNDKTPRGRGRNDKR 503 >gi|313232819|emb|CBY09502.1| unnamed protein product [Oikopleura dioica] Length = 500 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 31/148 (20%), Gaps = 3/148 (2%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + T S E + K + ++ ++ Sbjct: 124 AVSQIKSGGKAEKTEKSSSKSSNKTKEADKSERKGSRDESKQREKKS--DKRAESKPRDD 181 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE-NG 682 G +R + RR R + + + + D E D + Sbjct: 182 KKGSKERRDKSERRDRDKSKKRETSEERRIRKEKERADRKEKERAERKDRKKGGEEKAER 241 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSD 710 + + +D Sbjct: 242 SERRSSRPVRPTSAKGERRRPPPVPEND 269 >gi|331242123|ref|XP_003333708.1| hypothetical protein PGTG_15468 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312698|gb|EFP89289.1| hypothetical protein PGTG_15468 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 350 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 40/163 (24%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + ++GS Q + K + ++ + PK Sbjct: 52 PHGHKKRGSDPQPSPDQPKKPETPNRRHKRSSDPPAADDASKKPDGPKPRHKRSSDPPAA 111 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + + + R++R P Q D + Sbjct: 112 DDANKKPDGPKPRQKRSSDPPAADDPNKKPDAPKPRQKRGSDPQADDPNKKPDAPKPRQK 171 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 G+ ++ + + S+ +D KK K R+ Sbjct: 172 RGSDPQADDPNKKPDAPKPRQKRGSDPQADDPNKKPDAPKPRQ 214 Score = 40.7 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 2/156 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + GSD + D+ P + + D +++++ Sbjct: 37 SSETGSSKNDGAGSDPHGHKKRGSDPQPSPDQPKKPETPNRRHKRSSDPPAADDASKKPD 96 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + R +R DA D + +P+ + + Sbjct: 97 GPKPRHKRSSDPPAADDANKKPDGPKPRQKRSSDPPAADDPNKKPDAPKPRQKRGSDPQA 156 Query: 690 YDVSIPPVSTPEMES--SNSSSDPIVKKTRWWKRRK 723 D + P + + S+ +D KK K R+ Sbjct: 157 DDPNKKPDAPKPRQKRGSDPQADDPNKKPDAPKPRQ 192 >gi|149177853|ref|ZP_01856452.1| hypothetical protein PM8797T_31980 [Planctomyces maris DSM 8797] gi|148843343|gb|EDL57707.1| hypothetical protein PM8797T_31980 [Planctomyces maris DSM 8797] Length = 1189 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 53/185 (28%), Gaps = 1/185 (0%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 N K + + + + ++ ++ P + + Sbjct: 566 QNNKSEPMENKSEKADRKSSDQADPDKKEEGQPGDQTKPGEENQQEKGSQKPGKKNSPQS 625 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 ++ + +E +S E + + + I++ + ++ + Sbjct: 626 ESTDPQKSEEPGAGQKPQKSGEKEELDSDGADDQEAIKRILEQLKKEGQQPEPGSEPKQE 685 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + Q D M+ + N +N T+ P + P+ SS +SSD Sbjct: 686 PDAEKQEPGKSENDPQMQDQKSSGANGEKNNPSSDTDKGSEG-EPQNAPDKNSSPTSSDK 744 Query: 712 IVKKT 716 K Sbjct: 745 ADKPD 749 >gi|91087903|ref|XP_970676.1| PREDICTED: similar to AGAP011127-PA [Tribolium castaneum] gi|270011940|gb|EFA08388.1| hypothetical protein TcasGA2_TC006035 [Tribolium castaneum] Length = 962 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 47/184 (25%), Gaps = 7/184 (3%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R ++ + +L+L ++R ++E + A F Sbjct: 70 RPHRSERRRHDDKKKHMTEAEKSILHLRKRERMQREKWEKYRKEQ---NLDPAAAVDDFA 126 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I ++ + + K D++ + PK I ++ Sbjct: 127 I----NIEKAIASVLKKDKHVSDEEKDEDKRGRKRKNRDKERPKGGKQRKIDSPKAEDDE 182 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + +R R P ++ SD S ++ N + Sbjct: 183 NASPKSDEKRDRSASPRSEDSYDSDESDRSRKKDYKKGKGRSRARKRSRERRNEQQTQPS 242 Query: 685 GFTE 688 + Sbjct: 243 KDAQ 246 >gi|110631437|gb|ABG81064.1| immunoglobulin A1 protease precursor [Haemophilus influenzae] Length = 1750 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 40/168 (23%), Gaps = 15/168 (8%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 V L + + + + S + + ++ + Sbjct: 1239 TVQPQTALESEN--VPTVKNAEEVQAQLQTQTSATVSTEQPAKETSSNVEQPVTESTTVN 1296 Query: 611 S-----LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + + S K RRRR +P D +D S S Sbjct: 1297 TGNSVVENPENTTQPAVNSESSEPKSRRRRSISQPQETSTDETTAADNSESSETKRRSRR 1356 Query: 666 MYMEPSDI--------TNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 +P + + +E S VS P+ S+ Sbjct: 1357 SVSQPQETSAEETTVTSTDETTVADNSKSSETKRRSRRSVSQPQETSA 1404 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 1/144 (0%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E+ VNTG+ V + + + + ++ S+ E D + ++ Sbjct: 1285 VEQPVTESTTVNTGNSVVENPENTTQPAVNSESSEPKSRRRRSISQPQETSTDETTAADN 1344 Query: 625 TGVIRKRRRRRRR-RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + +RR RR +P + V+ + S + E A Sbjct: 1345 SESSETKRRSRRSVSQPQETSAEETTVTSTDETTVADNSKSSETKRRSRRSVSQPQETSA 1404 Query: 684 HGFTENYDVSIPPVSTPEMESSNS 707 T E +N+ Sbjct: 1405 EETTVTSTNETTVADNSENNKTNT 1428 >gi|123492947|ref|XP_001326174.1| hypothetical protein [Trichomonas vaginalis G3] gi|121909085|gb|EAY13951.1| hypothetical protein TVAG_490890 [Trichomonas vaginalis G3] Length = 1042 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 59/220 (26%), Gaps = 9/220 (4%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI----ELAD 560 E + + + + + E I + Sbjct: 288 HKTETEPSKEQINEVTEISDVKQQENVEISNSNQ-NHIETEQKSEITTEPEPIKEDNIIT 346 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 IE + +++ K + ++ +E V + + S S +D ++ Sbjct: 347 SQENIEISNETKSIEEEQKKETA--TEHVKEETVESVQETDEKQQENSSSSQKDNENEQK 404 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E S ++ + T+ + ++ I+D + E S+ T + L Sbjct: 405 LENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEIND--EEQKEISNSTQNELEP 462 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + V + + S + + T + Sbjct: 463 ENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQ 502 >gi|21355513|ref|NP_651272.1| CG13625 [Drosophila melanogaster] gi|7301183|gb|AAF56315.1| CG13625 [Drosophila melanogaster] gi|15010486|gb|AAK77291.1| GH07383p [Drosophila melanogaster] gi|220945000|gb|ACL85043.1| CG13625-PA [synthetic construct] gi|220954826|gb|ACL89956.1| CG13625-PA [synthetic construct] Length = 647 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 35/153 (22%), Gaps = 1/153 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SD P K + +S + ++ Sbjct: 267 RRRRDKDSTPPRRRKDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRDNDQSPVRRRR 326 Query: 627 VIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + RRRR T +D S D + + Sbjct: 327 DSDQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDVDQSPPRRKRDFDQSPTRKRDKSPRR 386 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 ++ + E + +K+RW Sbjct: 387 RHDSDQSPARNHRSRERSPPPRNRFKEERKSRW 419 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 17/218 (7%), Positives = 46/218 (21%), Gaps = 3/218 (1%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR--FGVSINVVIGIELADKLFYI 565 ++ + + + + E R V + I Sbjct: 88 RNIAVKDEIKEEHEESSPATGIRIKQEPLDEEQEMWGRKATVVKVKDEFSPSRRSSPVRI 147 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + ++ + P + + +S Sbjct: 148 KQEKRSSSRDLSPARSSKPAKREESPQRGRRRAGSSDQSPTRRGRDGDQSPPRQKHRDSD 207 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+ R + P D+ + S + + Sbjct: 208 -QSPPRKARNGNQSPVRKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPP 266 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S PP + + S ++ + RK Sbjct: 267 RRRRDKDSTPPRRRKDSDQSPPRRRKADDQSPVRRERK 304 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 17/173 (9%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + S + + + +D P + S D + Sbjct: 215 RNGNQSPVRKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPPRRRRDKDS 274 Query: 627 VIRKRRR-------RRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +RR+ RRR+ RR D + + Q+ + D P Sbjct: 275 TPPRRRKDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRDNDQSPVRRRRDSDQSPPR 334 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVS---TPEMESSNSSSDPIVKKTRWWKRR 722 + + P +P + P K+ + +RR Sbjct: 335 RRRDDKQTPPRRRRNSDQSPPRRPKDVDQSPPRRKRDFDQSPTRKRDKSPRRR 387 >gi|308499266|ref|XP_003111819.1| CRE-THOC-2 protein [Caenorhabditis remanei] gi|308239728|gb|EFO83680.1| CRE-THOC-2 protein [Caenorhabditis remanei] Length = 1477 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 32/149 (21%), Gaps = 16/149 (10%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + + + + + E D+ + SE E Sbjct: 1278 PKKESDSTEDGERITPSPPPAKKTRIGDRLKRPEEEKKDDKEPIKDTDSEKGES------ 1331 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 +++R + R + + I + Sbjct: 1332 ----------KKKREKSRERKDKDPSGKEKRSEKEKEKKQHKENGESQKDQKILKDQRQK 1381 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + + E ++P + E +S Sbjct: 1382 SKSEERKEVAGPTLPEAPPKKDEKKSSRK 1410 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 14/152 (9%), Positives = 36/152 (23%), Gaps = 6/152 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K S + +D + +E + K E ++ + E+ T Sbjct: 1196 KVSTAEKPKKKETTEKTDGEPADKKLKVEGKKNGTSAEKATKEEVQQNGGASGTVEKKTT 1255 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID------DSFDMYMEPSDITNHNLLE 680 + R++R + + + S ++ + + + Sbjct: 1256 SDENKERKKRPGKTSAPSAPKEPKKESDSTEDGERITPSPPPAKKTRIGDRLKRPEEEKK 1315 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + E DP Sbjct: 1316 DDKEPIKDTDSEKGESKKKREKSRERKDKDPS 1347 >gi|147899027|ref|NP_001089658.1| sister chromatid cohesion protein PDS5 homolog B-A [Xenopus laevis] gi|123908012|sp|Q498H0|PD5BA_XENLA RecName: Full=Sister chromatid cohesion protein PDS5 homolog B-A; AltName: Full=Androgen-induced proliferation inhibitor A gi|71682207|gb|AAI00221.1| MGC114980 protein [Xenopus laevis] Length = 1448 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 52/226 (23%), Gaps = 7/226 (3%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIV-EYEA--RFGVSINVVIGIELADK 561 R L Q + + + + E E R + L+ Sbjct: 1173 RLDSMELDQSENEDYTMSSPLSGKKSDKRDDSDLLKSELEKPRRGKKQSLIDQDDSLSMD 1232 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 P G K + + E +++ L + S Sbjct: 1233 ELSKPAQEPKSRTGQRGRKRAAAASDSEEQTWQEKRLKEDLLENEDEQNSPPKKGRRGRP 1292 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 +S + + V S + + ++ S + E D + Sbjct: 1293 PKSAKMAISKEEPTVTTPKRGRKKAVPVESPPTDEDDHLEISEEQDFENIDQKRKGRGSS 1352 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV----KKTRWWKRRK 723 + S+ S P + KK+ + RK Sbjct: 1353 RRTPQKSDSTDSLLDTSRPTPQKRRGRPPKTPTVQQKKSHVGRPRK 1398 >gi|307204648|gb|EFN83270.1| Myosin light chain kinase, smooth muscle [Harpegnathos saltator] Length = 9315 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 11/180 (6%), Positives = 46/180 (25%), Gaps = 5/180 (2%) Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 I + I++ + + + P+ + + + ++ + + Sbjct: 6187 KIKKESSKKDEAAQMEIKREEQEKKDETEKSRKEDEKLKPTAIEEAKVIPDEQIKVTDTQ 6246 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 +Q E +R+ + + + + + ++ Sbjct: 6247 ENKKAPMQRRSKRESKKAEKADEEPIEKRKEEIRKMDEKTAQTQSVHVNDAMKENEASKD 6306 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS-----DPIVKKTRWWKRRK 723 + ++ E E++ + S + + +T + R+ Sbjct: 6307 DRQYRKSNEDWERDERLRMRQKQEEKFSGKISELQERENKSLYLKINKEINETGKEEERR 6366 >gi|326917060|ref|XP_003204822.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Meleagris gallopavo] Length = 1046 Score = 43.0 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 38/157 (24%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ ++ + + ++ S ++ KS + + + +S Sbjct: 274 DQTRKSRSPMLKRRSQEKNRKSKSPPEDRNKADDKSKSRDRRKSPVVNESKSRDRGRKSK 333 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R + + RR + D +D + + Sbjct: 334 SPAELRSKSKDRRSRSKDRKSRRSETDKDKKPIKSPSKDASSGKENRSPRRPGRSPKGRS 393 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + +P S +TR RR Sbjct: 394 LSPKPREKSRRSRSPLFNDRRSKQSKSPSRTRSPARR 430 >gi|156390409|ref|XP_001635263.1| predicted protein [Nematostella vectensis] gi|156222355|gb|EDO43200.1| predicted protein [Nematostella vectensis] Length = 999 Score = 43.0 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 65/222 (29%), Gaps = 8/222 (3%) Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA-RFGVSINVVIGIELADKLFYIEK 567 + A + D + + E FG N L+ + + Sbjct: 428 KENQDNKAQAKKNTNNPDKDALRETDEIKPRNDLEKGLFGDQANTARESYLSLEEKKTQN 487 Query: 568 GSPVQALV-----NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + K D + + E + D+A +E + Sbjct: 488 TEENKEPKVQLVTPKEMKRYLDKARDTIARIRESMGDDKAGKDDCNAEDKISENHKQQTN 547 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + + RR + + + D + + ++ D ++PS + ++ Sbjct: 548 DENDKESRARRGTEGKSASDNEKDLSRSAKSKNTKSKSKKKEDDAVKPSSSPKSPVNKSS 607 Query: 683 AHGFTENYDVSIPPVSTPE--MESSNSSSDPIVKKTRWWKRR 722 A+ + ++ + + + NS+ +KK++ +R Sbjct: 608 ANKGSTESNLVMKNTDDEKEVRKQVNSTPSQEIKKSQASDKR 649 >gi|326469593|gb|EGD93602.1| DNA ligase [Trichophyton tonsurans CBS 112818] Length = 859 Score = 43.0 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 4/153 (2%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F + S + + K + PI + +I Sbjct: 33 FSSKSSSSKNDEAKEKTDEAVEETPQTPRKQVGRAGSKRTPPPIDDGDVDGEILSGGEKS 92 Query: 623 ESTGVIRKRRRRRR----RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ES + +R++R+ + +D S N S Sbjct: 93 ESISPVTRRQKRKEAVTTKGDEESDEQPVTKRRRKSPKSNTKTKSPINGGCSKAAAADEQ 152 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 E S S E+E + P Sbjct: 153 SPANIKSDAEPELSSAEENSASEIEEDDIDDKP 185 >gi|297488544|ref|XP_002697009.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain containing 1 [Bos taurus] gi|296474997|gb|DAA17112.1| membrane associated guanylate kinase, WW and PDZ domain containing 1 [Bos taurus] Length = 1452 Score = 42.7 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 23/205 (11%), Positives = 41/205 (20%), Gaps = 18/205 (8%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R E + + + G R S A E ++ + Sbjct: 1255 RDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAPEGRRDAQPERMVTNGPKRRSP- 1313 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 +KR L + ++ +P Sbjct: 1314 ---EKRREGTR-----------SADNTLERREKQEKRKEVSPERRRERSPTRRRDGSPGR 1359 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + D+ P K S + + T + RR R + D G Sbjct: 1360 RRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPER---RRERSLEKRNKEDRGSH 1416 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITN 675 + D P Sbjct: 1417 RERDETSLRQDTGRSSRHPPEQRRR 1441 Score = 41.9 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 14/144 (9%), Positives = 32/144 (22%), Gaps = 1/144 (0%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQD 617 A + G ++ S + E + +S + D Sbjct: 1298 AQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRRRDGSP 1357 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 ++ +RR R+R + + + + D +H Sbjct: 1358 GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRRERSLEKRNKEDRGSHR 1417 Query: 678 LLENGAHGFTENYDVSIPPVSTPE 701 + + PP Sbjct: 1418 ERDETSLRQDTGRSSRHPPEQRRR 1441 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/170 (9%), Positives = 40/170 (23%), Gaps = 7/170 (4%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + + +A V S+ P+ + + Sbjct: 1239 PDLHKSSPH------GEKRAHVRDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAP 1292 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + + E KRR +RR + + + + P+ Sbjct: 1293 EGRRDAQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRR 1352 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + D P + ++T+ +RR+ Sbjct: 1353 RDGSP-GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRR 1401 >gi|255940392|ref|XP_002560965.1| Pc16g06290 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585588|emb|CAP93299.1| Pc16g06290 [Penicillium chrysogenum Wisconsin 54-1255] Length = 814 Score = 42.7 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 5/153 (3%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK--RRR 633 T K S+S+ P + V + +ES + +V E + Sbjct: 17 PTPSKTPSESEKPDSKPEEQTVAETTTSEAPAPTESEPIQKPEVVEENKDDDFTTVTSKH 76 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE---NGAHGFTENY 690 + + + V + S ++ DDS E A G E Sbjct: 77 AAKTKAINSRTSSPSVRTGSKSRKSKEDDSNTSNGNADATEKQAPSEGQTEKAEGAAEKS 136 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P+ W +RR+ Sbjct: 137 TEKPEDSEKTASPPKELKAAPLPSVNIWQQRRE 169 >gi|195121632|ref|XP_002005324.1| GI20420 [Drosophila mojavensis] gi|193910392|gb|EDW09259.1| GI20420 [Drosophila mojavensis] Length = 4529 Score = 42.7 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 2/151 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK S + + + K ++ +E L + + E + V + Sbjct: 3009 EKVSEEKVPESKKPETKESEAESQKAKVLDKESAEEQTLDAKQKDQAEKEAEANVQKGEV 3068 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + + + ++ + + +S + + D + + A Sbjct: 3069 SEVIAEKASEEKVPESKKPETKETEAESQKAKVLEKESAEE--QKLDAKKKDQSQKEAEA 3126 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + +VS E S P K+T Sbjct: 3127 KAQKGEVSEVMTEKASEEKVPESKKPETKET 3157 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 5/217 (2%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL---AD 560 + EE + + +L+++ A +A+ + Sbjct: 3009 EKVSEEKVPESKKPETKESEAESQKAKVLDKESAEEQTLDAKQKDQAEKEAEANVQKGEV 3068 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 EK S + + + K +E +E L K + + + Sbjct: 3069 SEVIAEKASEEKVPESKKPETKETEAESQKAKVLEKESAEEQKLDAKKKDQSQKEAEAKA 3128 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + + + + + ++ + + +S + + D + E Sbjct: 3129 QKGEVSEVMTEKASEEKVPESKKPETKETEAESQKAKVLEKESAEE--QKLDAKQKDQAE 3186 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 A + +VS E S P VK++ Sbjct: 3187 KEAEAKAQKGEVSEVIAEKASEEKVPESKKPGVKESG 3223 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 9/216 (4%) Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-LFYIEKG 568 ++ + + K+A ++E E+ ++ + + +KG Sbjct: 2877 EVIAEKVSEVPESKKPETKESEAESKKAKVLEKESAEEQKLDAKQKDQAEKEAEAKAQKG 2936 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + K E Q +L +E + + Sbjct: 2937 EVSEVIAEKVSEESVPESMKPVVKESEAESQKAKVLEKESAEEQKLDAKPEKPAQKEAEA 2996 Query: 629 RKRR-------RRRRRRRPATDHHDAGVVSDVSSIQN-VIDDSFDMYMEPSDITNHNLLE 680 + ++ + + + Q + D + D + E Sbjct: 2997 KAQKGEVSEVIAEKVSEEKVPESKKPETKESEAESQKAKVLDKESAEEQTLDAKQKDQAE 3056 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 A + +VS E S P K+T Sbjct: 3057 KEAEANVQKGEVSEVIAEKASEEKVPESKKPETKET 3092 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/222 (8%), Positives = 52/222 (23%), Gaps = 7/222 (3%) Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 + ++ + V +A ++E E+ ++ + + Sbjct: 2548 KAQKEEVFEVIAEKVSEVPESKKPAVKESEAESLKAKVLEKESAEEQKLDAKPEEKAQKE 2607 Query: 562 -LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 +KG + + + K E Q +L +E + Sbjct: 2608 AEKKAQKGEVSEVIAEKVSEEKVPESKKPETKESEAESQKAKVLEKESAEEQKLDAKQKD 2667 Query: 621 SEESTGVIRKRRRR------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 E + ++ + + VV + + E + Sbjct: 2668 QAEKEAEAKAQKGEVSEVIAEKVSEESVPESMKPVVKESGAESQKAKVLEKESAEEQKLD 2727 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + V ++ S P K++ Sbjct: 2728 AKPEKQAQKEAEANAQTGEVSEVIAEKVSEVPESKKPETKES 2769 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 28/252 (11%), Positives = 66/252 (26%), Gaps = 15/252 (5%) Query: 474 SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN 533 L++ K + ++ + ++ EE + + +L Sbjct: 3044 EQTLDAKQKDQAEKEAEANVQKGEVSEVIAEKASEEKVPESKKPETKETEAESQKAKVLE 3103 Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 ++ A + +A+ + +KG + + + K Sbjct: 3104 KESAEEQKLDAK-------KKDQSQKEAEAKAQKGEVSEVMTEKASEEKVPESKKPETKE 3156 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-------RRRRRRRPATDHHD 646 E Q +L +E + E + ++ + + Sbjct: 3157 TEAESQKAKVLEKESAEEQKLDAKQKDQAEKEAEAKAQKGEVSEVIAEKASEEKVPESKK 3216 Query: 647 AGVVSDVSSIQN-VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 GV + Q + + + D + E A + +VS E Sbjct: 3217 PGVKESGAESQKAKVLEKESAEEQKLDAKQKDKAEKEAKAKAQKGEVSEVIAEKASEEKV 3276 Query: 706 NSSSDPIVKKTR 717 S P VK++ Sbjct: 3277 PESKKPGVKESG 3288 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 10/146 (6%), Positives = 33/146 (22%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + +++ + V + E+ +D + ++ Sbjct: 2752 AEKVSEVPESKKPETKESEAESKKAKVLEKESAEEQKLDAKQKDQAEKEAEAKAQKGEVS 2811 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 + + VV + + E + + Sbjct: 2812 EVIAEKVSEESVPESMKPVVKESEAESQKAKVLEKESAEEQKLDAKPEKPAQKEAEAKAQ 2871 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKT 716 + V ++ S P K++ Sbjct: 2872 KGEVSEVIAEKVSEVPESKKPETKES 2897 >gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii ATCC BAA-894] gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894] Length = 690 Score = 42.7 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 593 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 642 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVT 108 DY Q+ +L+ + Sbjct: 643 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQ 677 >gi|115534313|ref|YP_783842.1| putative spread protein [Streptomyces laurentii] gi|23978905|dbj|BAC21268.1| putative spread protein [Streptomyces laurentii] Length = 408 Score = 42.7 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 36/154 (23%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 +A ++ + ++ E + +A L + + + Sbjct: 170 EDARAAEREQQRLADERAREQERQDREHAREQQAALERERLAHDAEQARAEREHAAQVER 229 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R R+RR D D + + + A Sbjct: 230 ERREDAARQRREEQDRADKARADAEAKAEREQKAKEATQRAERERKAAEARRARAPVSAA 289 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +T + +++ P RR Sbjct: 290 VSTPRPTVSTTVSTPAHDTTKTPSETPKAAEARR 323 >gi|26006103|dbj|BAC41395.1| mKIAA0155 protein [Mus musculus] Length = 386 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 30/140 (21%), Gaps = 2/140 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL--EDIQDNIVSEESTGVI 628 + SDS D S+E + Sbjct: 240 AEKKKAHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESDEDSDSD 299 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R+RRR +D+ S +DS + Sbjct: 300 QPSRKRRRSGSEQSDNESVQSGRSPSGASENENDSRPASPSAESDHESEQGSDNEGSGQG 359 Query: 689 NYDVSIPPVSTPEMESSNSS 708 + + S P S E S Sbjct: 360 SGNESEPEGSNNEASDRGSE 379 >gi|317030118|ref|XP_001391949.2| hypothetical protein ANI_1_2072064 [Aspergillus niger CBS 513.88] Length = 964 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 36/154 (23%), Gaps = 1/154 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + P + + +E + + E E Sbjct: 564 EARTEPKPSRPVRRGRGRKPLPENTDDAQASNEEIPAQAEQTEPETEVQPAQQTEPPKPA 623 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ R R R+ D A + + V + E E T+ Sbjct: 624 KRGRGRPLSRKE-NDVTQAPDEEPTAQAEAVEPEPVPEPEEEPQPEPPAEPEPEKDDTTQ 682 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P + + P KK + + R Sbjct: 683 AAVEEATAQDEPAEPAEPTEEAPPPKKRKPRQPR 716 >gi|194677285|ref|XP_001789410.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain containing 1 isoform 1 [Bos taurus] Length = 1454 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 23/205 (11%), Positives = 41/205 (20%), Gaps = 18/205 (8%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R E + + + G R S A E ++ + Sbjct: 1257 RDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAPEGRRDAQPERMVTNGPKRRSP- 1315 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 +KR L + ++ +P Sbjct: 1316 ---EKRREGTR-----------SADNTLERREKQEKRKEVSPERRRERSPTRRRDGSPGR 1361 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + D+ P K S + + T + RR R + D G Sbjct: 1362 RRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPER---RRERSLEKRNKEDRGSH 1418 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITN 675 + D P Sbjct: 1419 RERDETSLRQDTGRSSRHPPEQRRR 1443 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 14/144 (9%), Positives = 32/144 (22%), Gaps = 1/144 (0%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-DIQD 617 A + G ++ S + E + +S + D Sbjct: 1300 AQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRRRDGSP 1359 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 ++ +RR R+R + + + + D +H Sbjct: 1360 GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRRERSLEKRNKEDRGSHR 1419 Query: 678 LLENGAHGFTENYDVSIPPVSTPE 701 + + PP Sbjct: 1420 ERDETSLRQDTGRSSRHPPEQRRR 1443 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/170 (9%), Positives = 40/170 (23%), Gaps = 7/170 (4%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + + +A V S+ P+ + + Sbjct: 1241 PDLHKSSPH------GEKRAHVRDPKGSREYSRQPNEHHTWNGTSRKPDSGACRPKDRAP 1294 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + + + E KRR +RR + + + + P+ Sbjct: 1295 EGRRDAQPERMVTNGPKRRSPEKRREGTRSADNTLERREKQEKRKEVSPERRRERSPTRR 1354 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + D P + ++T+ +RR+ Sbjct: 1355 RDGSP-GRRRRSLERLLDQRRSPERKRGSSPERRAKSTDRRRTKSPERRR 1403 >gi|71981657|ref|NP_496311.2| BLIstered cuticle family member (bli-1) [Caenorhabditis elegans] gi|115502367|sp|Q09457|BLI1_CAEEL RecName: Full=Cuticle collagen bli-1; AltName: Full=Blistered cuticle protein 1; Flags: Precursor gi|37619788|emb|CAA86755.2| C. elegans protein C09G5.6, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 948 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 19/192 (9%), Positives = 39/192 (20%), Gaps = 32/192 (16%) Query: 562 LFYIEKGSP--------------------VQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 + +E+ + P Y+ + Sbjct: 678 NYEVERSREYVPEAPRPRQGYEHSSGYGGDDRKEQPKYMESRPVDEPRYETDAPSRS--R 735 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV----------S 651 L + E D R+ RR + + Sbjct: 736 PLKKVEIIRHPERGYDRRQPSYEDSKPRQEEPRRYETEAEPRYEEVPRKETHPPGFGRPK 795 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + + M P T + E D+S P + Sbjct: 796 SEENPRETGRTYSEEAMPPVQQTEKYNGDKRKKNQPEYEDISKPEEDKERAMEKHHKKPN 855 Query: 712 IVKKTRWWKRRK 723 ++ +W + RK Sbjct: 856 KFQEKQWEEHRK 867 >gi|195401465|ref|XP_002059333.1| GJ18392 [Drosophila virilis] gi|194142339|gb|EDW58745.1| GJ18392 [Drosophila virilis] Length = 5496 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 57/621 (9%), Positives = 159/621 (25%), Gaps = 47/621 (7%) Query: 57 AFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADD--VTHGDVTI 114 AFV+ G GF + PD L+++ + + G Sbjct: 4559 AFVEIGSK--GF----CVPPD-----------LMQDEEGQSKQDSKNGEGFGLEDGTGEN 4601 Query: 115 PNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVI 174 +E + + + + + + ++ D + + +E Sbjct: 4602 DASDKIESEDQLDDAKRPEDRKDEGDKEEPDCKEEKGIEMSDDFDAKMQDVEKPENEEDD 4661 Query: 175 KNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMP--------NTSKGETISRKITNP 226 ++ KE + A + G N S+ + Sbjct: 4662 SGESENEDELNKEMGETEQGAEKLDDQIWGDDQEKQHEEEEQPDLNEEDQGKGSKDEKDE 4721 Query: 227 V-----DRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLM-RLWDNVRELAL 280 + KE + G+ +G + K + + + L + Sbjct: 4722 HNDLDTKNEAAKEDGKDEHEKDGLDATNEPSGEDKRKEQARDIDDMKEPELDEEQTNAMH 4781 Query: 281 NSVAPHLVYEEGNL-IKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLLMPSYARIVRQY 339 N + EE +L + + + E K+ M+ ++ Sbjct: 4782 NELEEPPEPEEMDLGDMNNVDEGQDNEADEANDENPFDIDAMKENMQAADEPEEEQAKEE 4841 Query: 340 EDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTA 399 + E + + + + + ++ + + + Sbjct: 4842 QPMSHDSDSDAEEESTEQEQTHKAPGEEYQDAVAEEEKENTELETQTRGDLDKEEEQPEE 4901 Query: 400 LQTNLEAAEEIA-RQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 EA EE + + +D + D + S +L++ ++D+ + Sbjct: 4902 TPAEPEAREEKPEQHTQSKDKSS--TEDNVQSVPDTEQNSSADQLQQE-QQDK---NIKQ 4955 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 E ++ E+ T + A + S + +E Q + Sbjct: 4956 DQKMDEQETGEEKDGVGQAENDTNDGGHQGIAETKETVSHEERKNEKQTQEKRKQGRTNE 5015 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY-IEKGSPVQAL--- 574 ++ + + E + + + + +++ Sbjct: 5016 ERTLGEAEQNKLKQLKTINQMKE-SKQNEGEKQDQPDEHVEAEEYQHVKEPKNSDKTTLD 5074 Query: 575 -VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 Q K E + L+ ++ + + +D + + S+ + Sbjct: 5075 NATEEQSKQIKHQEDEEPKVDEDAENADELMADEETTTAPEEEDAQLEQLSSERTDQNSD 5134 Query: 634 RRRRRRPATDHHDAGVVSDVS 654 + + A + + ++ Sbjct: 5135 KPSKTEQAKERLETAEQMEIE 5155 >gi|114645177|ref|XP_001164921.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 2 [Pan troglodytes] Length = 1390 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900 Query: 720 KRRK 723 R + Sbjct: 901 SRER 904 >gi|325116896|emb|CBZ52449.1| NLI interacting factor-like phosphatase domain-containing protein [Neospora caninum Liverpool] Length = 2217 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 38/145 (26%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + G + + ++ + +++ + ++ ++ EE Sbjct: 572 REDEDSEHEGEADQREHEDSEHEGEADQREDEDSEHEGEADQREDEDSEHGSPEEKRVEP 631 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K+RR RRR + + D +E Sbjct: 632 GKKRRGGRRRTGRKESEGRRGGKGDRAKGEKRAKGEDEASRARPTEAERPDATHQGEISE 691 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV 713 P+S + S + S+ Sbjct: 692 GLQEGQCPLSEHQCPSPSDSALESP 716 >gi|195378064|ref|XP_002047807.1| GJ13644 [Drosophila virilis] gi|194154965|gb|EDW70149.1| GJ13644 [Drosophila virilis] Length = 1024 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 14/164 (8%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + ++ K V D + P P+ ++ +D + + R + Sbjct: 472 EVSKKPPEEITPLEIKLLRAKPNNKVKLDPPVKPTPEPQTPKDDKPKPLPITPKTEPRSK 531 Query: 632 R-----------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 R R R + T DA S + D + P N + + Sbjct: 532 RTDANISTGVQLRETRGMQRMTRSADARPYSKY--MGLRRTLDNDKKVTPKRKRNSDTNQ 589 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSS-DPIVKKTRWWKRRK 723 + +V T E + + +P KK +RK Sbjct: 590 TPTTSKLKKVEVKQEVTVTAEKSKTTPTKGNPKTKKIGRAPKRK 633 >gi|156538557|ref|XP_001607418.1| PREDICTED: similar to RH35990p [Nasonia vitripennis] Length = 606 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 35/158 (22%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E A + E IP E +N S Sbjct: 3 ENKEESPAKKPETTVATTADNPAETPAENPEKVPAETAAEIPAKAPAETPAENPAKALSE 62 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + T S+ + + + E T+ + Sbjct: 63 TPTESPVKAPAETPAKTSEETPAKTSEETPAKTSEETPAKTSEETPAKTSEETPAKTSEE 122 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P ++ E + + P V KT+ R+K Sbjct: 123 TPAKTSEETPAKTSEETPAKTPAEAPAVLKTKQDFRKK 160 >gi|260825351|ref|XP_002607630.1| hypothetical protein BRAFLDRAFT_84681 [Branchiostoma floridae] gi|229292978|gb|EEN63640.1| hypothetical protein BRAFLDRAFT_84681 [Branchiostoma floridae] Length = 1012 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 14/178 (7%), Positives = 46/178 (25%), Gaps = 23/178 (12%) Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596 + + E + ++ + I+ S+ Sbjct: 210 RWLTDLEEF---------NEWMNEEDYEID-----------ESMSHSEEPERRERGKPGP 249 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + + P P + + + ++ + + + V +V+ Sbjct: 250 KKRKRSPSPDPTKKKKKGRTPGPTPDRKKRSSKEDPDQEDSTKDMDNPSPVPNVEEVNLP 309 Query: 657 QNVIDDSFDMYMEPSD---ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 +NV++ D +P + + + E+ E+ + + N + Sbjct: 310 KNVVNTKKDSEQQPIKGGTLADLDEKEDEEGKSEEDKTKKEGEGPKDDSQEDNVTEQT 367 >gi|220905031|ref|YP_002480343.1| NLP/P60 protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869330|gb|ACL49665.1| NLP/P60 protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 325 Score = 42.7 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 42/176 (23%), Gaps = 2/176 (1%) Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 R V IN + + + L SD + + + Sbjct: 149 KRTKVRINSLDDPYFKTTFLSARRVKVEGGETLTAQAESRLSDFTEEKVIRELARDKKKP 208 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 A + + ++T + R+ A + ++ + Sbjct: 209 AKSRAAATRDNKRTNTREKKRDATIQVASNDRKGAAPARAAEARNSKNAKQAAQTAKAPA 268 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S + + TE + S + +S N + K R Sbjct: 269 KTAGKAQSKSQNKAGATAKKPDNKKTEAKKPAPAKTSAAKSDSGNKKNQGKDKNNR 324 >gi|302380964|ref|ZP_07269425.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna ACS-171-V-Col3] gi|302311185|gb|EFK93205.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna ACS-171-V-Col3] Length = 1889 Score = 42.7 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 41/178 (23%), Gaps = 5/178 (2%) Query: 543 EARFGVS---INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E + G I V E++ + IE+ + T + P Sbjct: 1587 EGKLGKKETTITVENSKEVSREEKIIEQPVKKIVKIGTKNVCEIPPVKPEDPTKPGNKDP 1646 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + P K + E T K +P + +N Sbjct: 1647 ENPTKPGDKDPENPTKPGDKDPENPTKPGEKDP--ENPTKPGEKDPENPTKPGEKDPENP 1704 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + P + + G + E P + + + + Sbjct: 1705 GSEKPNEPGTPGENKPNEPGTPGENKPNEPGTPGEKPNEPGTPGENKPNEPGTPGENK 1762 >gi|194902401|ref|XP_001980690.1| GG17485 [Drosophila erecta] gi|190652393|gb|EDV49648.1| GG17485 [Drosophila erecta] Length = 3103 Score = 42.7 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 17/208 (8%), Positives = 44/208 (21%), Gaps = 2/208 (0%) Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + + L + E + V + + K + Sbjct: 1046 SKENKSDEKEAEQPRLKKLPSTAELEDRFNALERKLSVQKSSPSKNKKEPPDEGESKSTK 1105 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 S + + P K + ++ ++ + Sbjct: 1106 EPEKPEEPETEMEKSSDCQSPIAAKDPKNSDQKKPETKETTQSPTENKDQKVKAKSPKSE 1165 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL--LENGAHGFTE 688 R + + D + V + + + D ++ E Sbjct: 1166 ERIGKETSKSKEDSQETDSTKKVETNPKLSSEKGDHALKEKREEAPGKTDKETAETKNEN 1225 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKT 716 D + + + S S P K+ Sbjct: 1226 KSDSQKKEATKTSVPQTESDSKPASKEK 1253 >gi|195337671|ref|XP_002035452.1| GM14709 [Drosophila sechellia] gi|194128545|gb|EDW50588.1| GM14709 [Drosophila sechellia] Length = 1759 Score = 42.7 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 11/157 (7%), Positives = 38/157 (24%), Gaps = 5/157 (3%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + + + ++ ES +N +++ + +R Sbjct: 287 EINRSREKSQHKNDVRGKPNNRSHDINRNRGRTRERSKESHGKSTENSKNKDESRGTGRR 346 Query: 632 RRRRRRRRPATDHHD-----AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R R + ++ ++N + T E Sbjct: 347 KSRERSQDKNSNRAKSMNLSKEKDEIEGELKNAASGKSQERDQSRGKTKDRSRERDRTRN 406 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + K + +R+ Sbjct: 407 KTREKSQARDQTKRKANDAEYTRVKSRKGSSSRDKRR 443 >gi|332846436|ref|XP_001135763.2| PREDICTED: putative NPIP-like protein LOC613037-like [Pan troglodytes] Length = 648 Score = 42.7 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 33/151 (21%), Gaps = 3/151 (1%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A V +A + + L S + +E +R Sbjct: 391 AEVKPSSPKPKRRRAAEVKPSSPEPKRRRPLRATEVKPSSPKPKRGREAEVKPSSPEPKR 450 Query: 633 RRR---RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 RR + P + A V S + ++ + Sbjct: 451 RREAELKPSSPKPNRWRAAEVKPSSPKPKRRRAAEVKPSPKPKWRRAAEVKPSSPKPKRR 510 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + P S + P K + + Sbjct: 511 RAAEVKPSSPKPKRRRATEVKPSSPKPKRRR 541 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 40/166 (24%), Gaps = 15/166 (9%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSESLEDIQDNIVSEEST 625 + + V+ + + PS K + + P PK +++ + + Sbjct: 344 RAAAVKTSSPKPKRRRAAEVKPSSPKLKRRRAAEVKPSSPKPKRRRAAEVKPSSPKPKRR 403 Query: 626 G-------VIRKRRRRRRR------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +RRR R P V S ++ P Sbjct: 404 RAAEVKPSSPEPKRRRPLRATEVKPSSPKPKRGREAEVKPSSPEPKRRREAELKPSSPKP 463 Query: 673 IT-NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 ++ + + P P+ + K R Sbjct: 464 NRWRAAEVKPSSPKPKRRRAAEVKPSPKPKWRRAAEVKPSSPKPKR 509 Score = 37.3 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 27/121 (22%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 V +A + + A P S + + V S ++R Sbjct: 528 TEVKPSSPKPKRRRASEVKPSSPKPKRRRAAEVKPSSPEPKRRRAAEVKPSSPKPKKRRA 587 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + P A V S N + + P + + Sbjct: 588 AEVKPSSPKPKWRRAAEVKPSSPKPNRRRAAEEKPSSPKPKRRRATEVKPSSPKPKRQRA 647 Query: 693 S 693 + Sbjct: 648 A 648 >gi|325116558|emb|CBZ52112.1| putative protein phosphatase 2C [Neospora caninum Liverpool] Length = 1928 Score = 42.7 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 14/158 (8%), Positives = 29/158 (18%), Gaps = 8/158 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------ESLEDIQDN 618 + + + S+S + + ++ P KS Sbjct: 815 RSKAAKPDASAEEAADSESNDSGRREKRSRDGEQDSRSPSQKSRTKKVSRRSKAPKSDAP 874 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RRR +R R D E + + Sbjct: 875 EKEAADSESKDSRRREKRSRDEEQDSRSPSQKPRTKKGLRRSKAPKSDAPEKEAADSESK 934 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + + S K Sbjct: 935 DSRRREKRSRDEEQDSRSPSQKPRIKKGVRRSKAPKPD 972 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 13/158 (8%), Positives = 30/158 (18%), Gaps = 8/158 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--------ESLEDIQDN 618 + ++ S+S+ + + ++ P K Sbjct: 865 RSKAPKSDAPEKEAADSESKDSRRREKRSRDEEQDSRSPSQKPRTKKGLRRSKAPKSDAP 924 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RRR +R R D + E + + Sbjct: 925 EKEAADSESKDSRRREKRSRDEEQDSRSPSQKPRIKKGVRRSKAPKPDASEEEAADSESN 984 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + + S K Sbjct: 985 DSGRREKRSRDEEQDSRSPSQKPRTKKGLRRSKAPKSD 1022 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 33/151 (21%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E SP + ++ + S+A S E E IP+ + + Sbjct: 172 EGTSPRRLESSSKKRQRRGSKASSSPSAREDEPTAEDYAKIPRRSKARKSDASEEEAAES 231 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 RRR +R R D E + + Sbjct: 232 ASKHSRRREKRSRDEEQDSRSPSQNPRTKKGVRRSKAPKPDASEEEAADSESNDSGRREK 291 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + + S K Sbjct: 292 RSRDEEQDSRSPSQKPRTKKGVRRSKAPKPD 322 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 34/150 (22%), Gaps = 10/150 (6%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + A + + ++ +++ Q + + + Sbjct: 622 DASEEEAADSESNDSGRREKRSRDEEQDSRSPSQKPRTKKGVRRSKAPKPDASEEEAADS 681 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 RRR +R R D + + + A Sbjct: 682 ESKDSRRREKRSRDEEQDSRSPS----------QKPRTKKGSRQAKAPKPDAPEKEAAES 731 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 +++ E S +S P KK Sbjct: 732 ESKDSGRREKGSHDQEQTSRGTSQKPRTKK 761 >gi|237723188|ref|ZP_04553669.1| transcription termination factor rho [Bacteroides sp. 2_2_4] gi|229447710|gb|EEO53501.1| transcription termination factor rho [Bacteroides sp. 2_2_4] Length = 752 Score = 42.7 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 13/163 (7%), Positives = 37/163 (22%), Gaps = 1/163 (0%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 ++ ++ S + K V + + ++ Sbjct: 63 NEEQKKKRSRVAPTKKEDKVVSTPKSGEVNKTKEATPVKAPQPSKKEESTNKEKEAPVVE 122 Query: 620 VSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E+ KR+ R R+ A + + V+ + + + Sbjct: 123 AKAENATTAPKRKVGRPRKSADAEEKKEVENVTPAAPKVVETKPVVAEKTTETKEKAAPV 182 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + A ++ + + I K + Sbjct: 183 QQPIAEKKAKSKPAAETNKPAAGPNKPVAEKKVIDKPQKKAAP 225 >gi|194770782|ref|XP_001967467.1| GF20725 [Drosophila ananassae] gi|190618477|gb|EDV34001.1| GF20725 [Drosophila ananassae] Length = 990 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 40/157 (25%), Gaps = 12/157 (7%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + K + +D+ + + K + + E S Sbjct: 296 RQEAATPEEEPPFKEDRAERRSVHDRLGTKAMESRSSQRTQKELYVPAHRRRGEPESSKD 355 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++ R + R R + D D+ D+ PS + G+ Sbjct: 356 RGQRERSKDRSRDRSKDQRDSS------------KDTSRKRRSPSPSVGKSKQRIGSRVI 403 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P E +S I + + RR+ Sbjct: 404 VAVRKPPEPSDDEDIAEKPVNSVIKIKPRPQVSPRRQ 440 >gi|8163646|gb|AAF73780.1|AF154013_1 surface protein PspC [Streptococcus pneumoniae] Length = 730 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 10/231 (4%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++ + + V + L N K + E Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + + E+G P + D E LP P + Sbjct: 243 KLKEAVEKNVATSEQGKPKGRAKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + K ++ RR T+ + + S V + ++ E + Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + N A E+ + + + KK +RK Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404 >gi|297691619|ref|XP_002823176.1| PREDICTED: SFRS2-interacting protein-like [Pongo abelii] Length = 1468 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 61/235 (25%), Gaps = 13/235 (5%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI-----VEYEARFGV 548 ++ + ++ E + ++ + + + + +Q + + + + Sbjct: 688 LTEHPRCTELPKTHTEQIQKHFSEDNNEMIPMECDSFCSDQNESEVEPSVNADLKQMNEN 747 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 S+ ++ EK V + ++ P + P Sbjct: 748 SVTHRSENNMSSSDLADEKVETVSQPSESPKDTIDKAKKP-RTRRSRFHSPSTTWSPNKD 806 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + + + TG + R+ + P+ + A S D + + Sbjct: 807 TPQEKKRPQSPSPTRETG----KESRK-SQSPSPKNESARGRKKSRSQSPKKDIARERRQ 861 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S + +E+ + +K+R R + Sbjct: 862 SQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRER 914 >gi|134078771|emb|CAK96884.1| unnamed protein product [Aspergillus niger] Length = 591 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 6/157 (3%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + E V + Q + + + + P E+ IQ+ Sbjct: 404 YESEVEDDVIWVDERPISTTITPQTEVEPQLGKDKDHNATIPPPAHEEAPPTIQNPDPEP 463 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGV------VSDVSSIQNVIDDSFDMYMEPSDITNH 676 ES ++R R+R+ P + A S N + DS + + Sbjct: 464 ESNPAPAPKKRGRKRKNPVEEQPPAPAPAIDSQNSSSDKENNPVSDSDPTTHKQENTQQE 523 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + G EN + +T + P Sbjct: 524 PDQQPPQDGENENENEPQQEQNTTPSTPLKPNKGPTK 560 >gi|302822655|ref|XP_002992984.1| hypothetical protein SELMODRAFT_431144 [Selaginella moellendorffii] gi|300139184|gb|EFJ05930.1| hypothetical protein SELMODRAFT_431144 [Selaginella moellendorffii] Length = 549 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 39/164 (23%), Gaps = 7/164 (4%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQA----PSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + + V+ + + + PS + + ES + + + Sbjct: 142 KVPRVVDVEVAEPSTPRKIVKAAGIGNGPSARTRSSPKTAPPPAA-VARVESRKKKKQPL 200 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ES +R R P+ + S + Sbjct: 201 PVSESDAEEEAPPAKRARTEPSKRRE--VTRASTRRSLESGSGSKGRPSRRKSKVVSKIT 258 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + TP + S + + +RRK Sbjct: 259 ALEVRVDSTSTLPAAKQEDTPRERKKVAKSGKGTAEKKTRERRK 302 >gi|254883345|ref|ZP_05256055.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319643356|ref|ZP_07997982.1| hypothetical protein HMPREF9011_03583 [Bacteroides sp. 3_1_40A] gi|254836138|gb|EET16447.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384985|gb|EFV65938.1| hypothetical protein HMPREF9011_03583 [Bacteroides sp. 3_1_40A] Length = 504 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 6/117 (5%) Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + L ++ ++V +ES KR+ R+ + G + + Sbjct: 319 RRGEKPESLTESVKKNEPQKPVDLVEQESLTRFDKRKGNNSNRKKKRKPENNGNNGEGTP 378 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 +N +P + + EN P + + + + P Sbjct: 379 NENRRP------QQPKENRSQQPKENRPPREGRPKQPREPKENKAQQPREENGNRPK 429 >gi|189239637|ref|XP_971697.2| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] Length = 1712 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 2/153 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK + + K+ E ++ S D ++ Sbjct: 440 EKDDDERKEDEKSGSEDKVKKKTEVKKDDEKKRKEIVENSDTNSSDATDQSESAPGSSKD 499 Query: 626 GVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 G +R + + ++ + A V +V +P + Sbjct: 500 GGRPRRLDKSKEKKIKQIIAPEKAKTVENVKKEDEEKMQQTRSKSQPVKPKEVVNNLSQK 559 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 S PP P + S+ KKT Sbjct: 560 KETKPGETPSKPPPQKPIAKKSDDEKKRGRKKT 592 >gi|169854353|ref|XP_001833851.1| hypothetical protein CC1G_01528 [Coprinopsis cinerea okayama7#130] gi|116504986|gb|EAU87881.1| hypothetical protein CC1G_01528 [Coprinopsis cinerea okayama7#130] Length = 1988 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 4/139 (2%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 GS Q + + + + E + +D E Sbjct: 110 GSGAQRGDEVKERRERREKDREKRDREKDRDKKEKEKDRERRHRSKDRSSTRDKERDKDK 169 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +R+ R R +T + + D + D S SD + + + A Sbjct: 170 KERRKDRER----STTRNRSKERKDRHRSKERKDRSDKKDRSKSDRKHESTKKPPAPPPP 225 Query: 688 ENYDVSIPPVSTPEMESSN 706 P + E S+ Sbjct: 226 PPEAPDTPITDSTGSEESS 244 >gi|38181902|gb|AAH61522.1| LOC23117 protein [Homo sapiens] Length = 420 Score = 42.7 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 5/154 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 250 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 309 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHNLLENGA 683 ++ +R+R P G V + + EP ++ + Sbjct: 310 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 369 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 DV + K+ R Sbjct: 370 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRR 403 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 274 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 333 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 334 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 393 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 394 EPSRKPKRRRAADVEPSLPEPKR 416 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 16/146 (10%), Positives = 32/146 (21%), Gaps = 2/146 (1%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + T + PS D N++ K + + + E ++R Sbjct: 273 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEM--EPPPEPKRR 330 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R A V S +E + Sbjct: 331 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRV 390 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 + P P+ + + + R Sbjct: 391 GDVEPSRKPKRRRAADVEPSLPEPKR 416 >gi|296199695|ref|XP_002747273.1| PREDICTED: PHD finger protein 20 isoform 1 [Callithrix jacchus] gi|296199697|ref|XP_002747274.1| PREDICTED: PHD finger protein 20 isoform 2 [Callithrix jacchus] Length = 1012 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 20/212 (9%), Positives = 58/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ ++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKRERFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLTCSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 K + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGEAKVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRVDKNSSQEKSKNYSENTDKD 322 >gi|260793276|ref|XP_002591638.1| hypothetical protein BRAFLDRAFT_80737 [Branchiostoma floridae] gi|229276847|gb|EEN47649.1| hypothetical protein BRAFLDRAFT_80737 [Branchiostoma floridae] Length = 771 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 10/149 (6%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES----------TG 626 + D S E + + EALL SE ++D E Sbjct: 371 ESSTMNLDDIPDSPSSIEEELQRQEALLEQLHSELGAGVEDPEKEERLWEVQRIITQLKR 430 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++ + T S + + D+ + + + I + Sbjct: 431 QLKRAKTTYASSAAKTSTKQKEKESKPTETKPKEKDTKEPETKSAAIEKPAEEKPAEKKV 490 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 TE P E + P KK Sbjct: 491 TEKKPAQKKPAEKKPAEKKPAQKKPAEKK 519 >gi|195490501|ref|XP_002093167.1| GE20934 [Drosophila yakuba] gi|194179268|gb|EDW92879.1| GE20934 [Drosophila yakuba] Length = 1080 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 44/149 (29%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S+ K+ + + S++ + +D +S++ G+ ++R Sbjct: 527 EKQRPNERQRSKERQRSKDRHRSRERQRSKERQLSKNRQLSKDRQLSKDRQGLKERQRSN 586 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 R+R H S S + + + + + Sbjct: 587 ERKRSKERQHSKDRQRSRERQPSKDRQRSKERQRSKEPQQSKDRQRSKERQRSRERPAKE 646 Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P + E S+ + D +++ RK Sbjct: 647 PRPTRSPRERSSKTRDDRRQRSPTNASRK 675 >gi|327298545|ref|XP_003233966.1| hypothetical protein TERG_05835 [Trichophyton rubrum CBS 118892] gi|326464144|gb|EGD89597.1| hypothetical protein TERG_05835 [Trichophyton rubrum CBS 118892] Length = 659 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 43/162 (26%), Gaps = 4/162 (2%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + + + +++G + + + I DEA E Sbjct: 255 KLQSPPKDSTPDAGLDRGDSPEPNDPSVPGDEPTESPRVHYPPIIDEQVDEAPEQTEDKE 314 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + ++ + E G + P+ + +A V ++ + E Sbjct: 315 ASDNPVVASPAAEDDGGDPVS----ENQLPSPEAQEAQDVEPDTTQREGPSVRDQDSPEN 370 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 N + G + S + + S+ P+ Sbjct: 371 RVTAPKNSRKRKKKGQGTDAPTQKGKASQKKDKGEERSTVPV 412 >gi|153808574|ref|ZP_01961242.1| hypothetical protein BACCAC_02870 [Bacteroides caccae ATCC 43185] gi|149128896|gb|EDM20113.1| hypothetical protein BACCAC_02870 [Bacteroides caccae ATCC 43185] Length = 749 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 38/149 (25%), Gaps = 1/149 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + A + + K + + ++ V E+T Sbjct: 86 RSRVAPAKKDNKVVSATKEGEAEKAKEAAPAKPQQPSKKEESANKEKETPAVEVKAENTA 145 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++ R R+ A + + V + + + + E + + A Sbjct: 146 APKRKVGRPRKNADAAEQKEVESVKTATPATPKVTE-DKVVTEKAPEVIEKAVPAQAPEK 204 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ++P++ + Sbjct: 205 KTKANKPAEEKKVVVKPQPQKKAEPVIDE 233 >gi|315044065|ref|XP_003171408.1| hypothetical protein MGYG_05954 [Arthroderma gypseum CBS 118893] gi|311343751|gb|EFR02954.1| hypothetical protein MGYG_05954 [Arthroderma gypseum CBS 118893] Length = 1082 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 52/220 (23%), Gaps = 8/220 (3%) Query: 507 VEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIE 566 EE + ++ ++R E E R + LA Sbjct: 863 DEERRKKLAEEKAAREEQRKLLDEQAAKQRQREEEVEKRLAAKKAGMPDPRLA----RAP 918 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + W++ D + Sbjct: 919 PTAAAEPSRTDSTERTAPRLNLTSRAGAGASWREREAAKKAAPSGEPPAADESSAPPPRT 978 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + R R D G + +++ + + + Sbjct: 979 LPGREPRELPSREREPPARDLGARDALRKPSGSSGAYVPVHLRGRNSPANGSAPPFSARR 1038 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK----KTRWWKRR 722 + + PPV+ ++S P K + W+ R Sbjct: 1039 EVSSSDARPPVARSPAPPADSEGKPEAKLPPPSSGAWRPR 1078 >gi|154338640|ref|XP_001565542.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1770 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 12/151 (7%), Positives = 23/151 (15%), Gaps = 1/151 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 A + + P + + KRR Sbjct: 770 AKTTPPYSSPPKQLVAKGEAETPKGEAQRGRGPQKGKRRPRKGKRRPQKGKRRPQKGKRR 829 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 ++ +RRP + Sbjct: 830 PQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGK-RRPRKGKRRPQK 888 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P K R K ++ Sbjct: 889 GKRRPRKGKRRPQKGKRRPQKGKRRPQKGKR 919 Score = 41.5 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 34/171 (19%), Gaps = 4/171 (2%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + KG + + + + + Q P + Sbjct: 775 PYSSPPKQLVAKGE-AETPKGEAQRGRGPQKGKRRPRKGKRRPQKGKRRPQKGKRRPQKG 833 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRP---ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + KRR ++ +RRP + + Sbjct: 834 KRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPRKGKRRPQKGKRRP 893 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + G + P+ + + +K Sbjct: 894 RKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQK 944 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 12/156 (7%), Positives = 27/156 (17%), Gaps = 2/156 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + S K + + + + + + Sbjct: 758 RKTDKPLAASFAAKTTPPYSSPPKQLVAKGEAETPKGEAQRGRGPQKGKRRPRKGKRRPQ 817 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN-LLENGAHGF 686 KRR ++ +RRP + Sbjct: 818 KGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKR 877 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 P ++ + KRR Sbjct: 878 RPRKGKRRPQKGKRRPRKGKRRPQKGKRRPQKGKRR 913 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 27/133 (20%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K P + + + + Q P + + + Sbjct: 841 KRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPRKGKRRPQKGKRRPRKGKRRP 900 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 KRR ++ +RRP + +GA Sbjct: 901 QKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRPQKGKRRRMKTGVSGAAAS 960 Query: 687 TENYDVSIPPVST 699 + P T Sbjct: 961 ITPRAANRPTAHT 973 >gi|109638462|ref|YP_656668.1| ORF13 [Ranid herpesvirus 1] gi|109138230|gb|ABG25707.1| ORF13 [Ranid herpesvirus 1] Length = 3149 Score = 42.7 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 8/138 (5%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-----RRRRRRRRR 639 +++P+ DK + L + +N + G R+ R + RR Sbjct: 75 ARSPAKDKTRPRRSSSRSPLKVRSKTQRNSPTNNKAPAKERGKARRPASPPEGRNKARRS 134 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + S I+ + + G + P+ T Sbjct: 135 TSPTKERGRAKRSASPIKERGRTRRSPTPDNERSKPGGAVSPAKEG---ARSRRVDPLPT 191 Query: 700 PEMESSNSSSDPIVKKTR 717 + + S+ P KK + Sbjct: 192 KDRSKARRSASPTRKKAK 209 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 32/159 (20%), Gaps = 5/159 (3%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+ + + S S+ ++ L+ + Sbjct: 46 SIDSNPSHERRRGRHERERSRSRDRPRERARSPAKDKTRPRRSSSRSPLKVRSKTQRNSP 105 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R + RR + S + Sbjct: 106 TNNKAPAKERGKARRPASPPEGRNKARRSTSPTKERGRAKRSASPIKERGRTRRSPTPDN 165 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 VS + + DP+ K R RR Sbjct: 166 ERSKPGGAVSPAKEG-----ARSRRVDPLPTKDRSKARR 199 >gi|307166162|gb|EFN60411.1| Retinoic acid-induced protein 1 [Camponotus floridanus] Length = 1434 Score = 42.7 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 7/158 (4%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED--IQDNIVSE 622 +EK + + +GS P +K+ V KS + ED + ++ Sbjct: 778 LEKLGDGNKKLGSSENIGSVIVTPIEEKDTSSVKSMSPERQKSKSPNREDEVVSPAFSND 837 Query: 623 ESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 +S ++RR+R+ R + + + + ++ I DS S T + Sbjct: 838 DSNDNTKQRRKRKLEKPVRLSKDSKTEVEDMELEPTEPTESRIIDSISEEAASSAPTTDS 897 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + +S + E + + PI ++ Sbjct: 898 VKTEEQIARGAEERISNKTIVDENAEEISEENQPIRRR 935 >gi|91093513|ref|XP_969441.1| PREDICTED: similar to tpr repeat nuclear phosphoprotein [Tribolium castaneum] gi|270002675|gb|EEZ99122.1| hypothetical protein TcasGA2_TC005228 [Tribolium castaneum] Length = 1187 Score = 42.7 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 11/219 (5%) Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE-ARFGVSINVVIGIELADKLFYIEKG 568 Q H + ++R + E R + + + ++ + K Sbjct: 812 EARQCKDLLSQAQYHVARARRVDEEERQLRRKQEDERTAFKMRQLEEQKKVEEEMRLTK- 870 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + ++ + + + + S+S D ++ E Sbjct: 871 EQLLQKRQEYKEKTKNALLFMEIPSEKTKGKGKGRKDQYISDSGSDRENQEGGEPKERGR 930 Query: 629 RKRRRRRRRRR--PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++R + R+R+ + G SD S + S + E + G Sbjct: 931 KRQRSKDRKRKGGSGRKRREKGGHSDSESDRPKNKRSRKKFKESK----GKQKDEGLSAK 986 Query: 687 TENYDVSIPPVSTPEMESSNSS---SDPIVKKTRWWKRR 722 ++ VS +ST E +S + + +R KR+ Sbjct: 987 QKSRIVSKATISTSEDDSDDGKLKIASGDESDSRGRKRK 1025 >gi|281346233|gb|EFB21817.1| hypothetical protein PANDA_010353 [Ailuropoda melanoleuca] Length = 3648 Score = 42.7 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 1/146 (0%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 +A + S + + + + + P E+ ++ ++ + G + Sbjct: 2256 ETEAATESSGPPASAPDPSAGPADTKEAGGNSSETSHPVPEAKGAKEEVPLARKEKGRQK 2315 Query: 630 KRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R RR+R T V + +Q+ + + P+ + Sbjct: 2316 TSRSRRKRNTNKKTGGTAETHVPEPDQVQSKSPATDEGTAVPAPEAPQEEQQREKPQSAP 2375 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714 + P TP +E+ + S K Sbjct: 2376 PECCAPDPSKTPSVENPSQESSVEEK 2401 >gi|114645173|ref|XP_001164885.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 1 [Pan troglodytes] Length = 1400 Score = 42.7 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900 Query: 720 KRRK 723 R + Sbjct: 901 SRER 904 >gi|4757118|emb|CAB42096.1| TashAT2 protein [Theileria annulata] Length = 1167 Score = 42.7 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 12/178 (6%) Query: 537 ATIVEYEARFGV---SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + + E + + SI + I+ +E Q + TG D + Sbjct: 349 QEVEDIETQTDLPTGSIEIQTDIQ------EVENIDT-QTDIPTGSIETQTDIQEVEDID 401 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 I+ Q+ + I + DI + E V ++R R R+ +P + Sbjct: 402 IQTDIQEVEDIGIQTIGNFSDITEVTKKHEKPEVPKRRPGRPRKHKPEPEQPKRKRGRP- 460 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + + T+ + + + + P Sbjct: 461 -RKHKPEPEQPKRKRGRPRKQKPEPESDHSEESTQPHPQEQETEDSIKALGPSPEKRP 517 >gi|301772092|ref|XP_002921461.1| PREDICTED: msx2-interacting protein-like [Ailuropoda melanoleuca] Length = 3673 Score = 42.7 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 1/146 (0%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 +A + S + + + + + P E+ ++ ++ + G + Sbjct: 2281 ETEAATESSGPPASAPDPSAGPADTKEAGGNSSETSHPVPEAKGAKEEVPLARKEKGRQK 2340 Query: 630 KRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R RR+R T V + +Q+ + + P+ + Sbjct: 2341 TSRSRRKRNTNKKTGGTAETHVPEPDQVQSKSPATDEGTAVPAPEAPQEEQQREKPQSAP 2400 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714 + P TP +E+ + S K Sbjct: 2401 PECCAPDPSKTPSVENPSQESSVEEK 2426 >gi|84998916|ref|XP_954179.1| Tashat2 protein [Theileria annulata] gi|65305177|emb|CAI73502.1| Tashat2 protein [Theileria annulata] Length = 1163 Score = 42.7 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 12/178 (6%) Query: 537 ATIVEYEARFGV---SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + + E + + SI + I+ +E Q + TG D + Sbjct: 345 QEVEDIETQTDLPTGSIEIQTDIQ------EVENIDT-QTDIPTGSIETQTDIQEVEDID 397 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 I+ Q+ + I + DI + E V ++R R R+ +P + Sbjct: 398 IQTDIQEVEDIGIQTIGNFSDITEVTKKHEKPEVPKRRPGRPRKHKPEPEQPKRKRGRP- 456 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + + T+ + + + + P Sbjct: 457 -RKHKPEPEQPKRKRGRPRKQKPEPESDHSEESTQPHPQEQETEDSIKALGPSPEKRP 513 >gi|317032623|ref|XP_001394101.2| hypothetical protein ANI_1_1612094 [Aspergillus niger CBS 513.88] Length = 535 Score = 42.7 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 6/157 (3%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + E V + Q + + + + P E+ IQ+ Sbjct: 348 YESEVEDDVIWVDERPISTTITPQTEVEPQLGKDKDHNATIPPPAHEEAPPTIQNPDPEP 407 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGV------VSDVSSIQNVIDDSFDMYMEPSDITNH 676 ES ++R R+R+ P + A S N + DS + + Sbjct: 408 ESNPAPAPKKRGRKRKNPVEEQPPAPAPAIDSQNSSSDKENNPVSDSDPTTHKQENTQQE 467 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + G EN + +T + P Sbjct: 468 PDQQPPQDGENENENEPQQEQNTTPSTPLKPNKGPTK 504 >gi|148674240|gb|EDL06187.1| mCG5243, isoform CRA_a [Mus musculus] Length = 1004 Score = 42.7 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 107 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 165 Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 V++NV L + + S KN + ++ + Sbjct: 166 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 221 Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + E + +E+ +++R R P ++ + ++ Sbjct: 222 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 281 Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693 S + N + + +EN D Sbjct: 282 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 316 >gi|26328781|dbj|BAC28129.1| unnamed protein product [Mus musculus] Length = 1004 Score = 42.7 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 107 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 165 Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 V++NV L + + S KN + ++ + Sbjct: 166 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 221 Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + E + +E+ +++R R P ++ + ++ Sbjct: 222 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 281 Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693 S + N + + +EN D Sbjct: 282 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 316 >gi|221488108|gb|EEE26322.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 1575 Score = 42.3 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 33/155 (21%), Gaps = 7/155 (4%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 +D++ P E + + D Sbjct: 246 VKADTDAPGAVPWQHADAKKPRAPGKHEVDQKSGEAKADADNRPAGDASGGASQSGQHAA 305 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 RRR + + ++ + D D +G Sbjct: 306 ETDESYRRREKTKKEHSDEGALLRPKKKRGDKKADEGDESPTKKRKERPGEEGDGKTAKE 365 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +N + + P+ ++ R KRR Sbjct: 366 QNKAREGGGL-------EGGAKKPLSRQKRLKKRR 393 >gi|302913178|ref|XP_003050861.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256731799|gb|EEU45148.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 4743 Score = 42.3 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 1/136 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD-NIVSEEST 625 + P +S AP+ + P P E + ++ES Sbjct: 4594 RPRPDDIRDRPSTAEREESVAPAPAPRRRFFGIKTSDNPPPAREEPAVAEPIRERAKESP 4653 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 V +R R + RRP +A S + + + D PS + ++ Sbjct: 4654 PVEEPKRTRSKYRRPRESMDEARPRSRRTRDEPAPESPRDRDARPSRHVRMDTEDSRRKA 4713 Query: 686 FTENYDVSIPPVSTPE 701 E + + Sbjct: 4714 RHEERRKAQAKEEEKK 4729 >gi|255692689|ref|ZP_05416364.1| transcription termination factor Rho [Bacteroides finegoldii DSM 17565] gi|260621573|gb|EEX44444.1| transcription termination factor Rho [Bacteroides finegoldii DSM 17565] Length = 731 Score = 42.3 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 8/152 (5%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 V + + + + ++ E+ +++ Sbjct: 72 TPAKKEDKVVSATKTGEVTKTKEAATAKAQQTPKEETTNKEKETPAVETKAENAVTPKRK 131 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R+ TD + + S + +P + Sbjct: 132 VGRPRKNSDTTDKKEVE--------ETKQVASNSVEAKPVVAEKTPETTEKTAPAQQPSA 183 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S P +E +++ V+K K +K Sbjct: 184 EKKEKPSKPTVEKDKPAAEKTVEKKVVAKPQK 215 >gi|315453859|ref|YP_004074129.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179] gi|315132911|emb|CBY83539.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179] Length = 556 Score = 42.3 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 78/275 (28%), Gaps = 18/275 (6%) Query: 31 ESEHKKQIKGNIYLAKVTRVEPSLQ--AAFVDYGGNRHGFLPFLEI-------HP-DYYQ 80 E K G Y KV V S++ FVD G + GFL EI HP DY Sbjct: 280 EEIQTKLKVG--YAIKV--VVSSIENYGVFVDIGNDIEGFLHISEISWNKDVKHPGDYLS 335 Query: 81 IPFSDRQALLKESNIAQT---DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQET-EEE 136 + +++ + + + ++D + V+ L E ++ Sbjct: 336 VDQEIDVKIIEIDSKNRRLRVSLKQLSDKPFNEFVSKHRVGDLVEGKVVSLTDFGAFVNL 395 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 + + + Q I + K + + ++ ++ Sbjct: 396 GGVDGLLHNKDAFWEADKKCVDHFKVGDTVQAKIARINKEDEKISLETKSKQPSPVEIFN 455 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 Y ++ G + + + + + E+ G V + Sbjct: 456 RQYKVGDTIQGSVVSIKDFGIFVQVDGIDVLIKTEDLGPLKKEEIQMGQDVSSVLISVDK 515 Query: 257 TKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEE 291 ++ L + + A N+ + + Sbjct: 516 ATNRVRASVRRLEHKREREQLQAFNATGGRMTLGD 550 >gi|315045227|ref|XP_003171989.1| IRE protein kinase [Arthroderma gypseum CBS 118893] gi|311344332|gb|EFR03535.1| IRE protein kinase [Arthroderma gypseum CBS 118893] Length = 1150 Score = 42.3 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 39/172 (22%), Gaps = 5/172 (2%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD--EALLP 605 +I + + IE+ + V + + E V + E + Sbjct: 542 KNIISIPDSSVTTSSKEIEQKPTDEQTEYPSLVVHPPPEKEEQKEPDEPVAESKAEPVAV 601 Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 P + S + N + + PA Q + Sbjct: 602 DPNASSPLSSESNQETPSAEAQTPNAGEPAEAEDPAAKTPRKKARRGRRGGQAHKRGKKN 661 Query: 666 MYMEPSDITNHNLLENGAHGF---TENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + P +T +++ + +K Sbjct: 662 TQDSADPDNPPSQSGGSQGARFNLQPDLQLVRTPSNTEVIDADGAIRIGQLK 713 >gi|67525459|ref|XP_660791.1| hypothetical protein AN3187.2 [Aspergillus nidulans FGSC A4] gi|40743764|gb|EAA62951.1| hypothetical protein AN3187.2 [Aspergillus nidulans FGSC A4] Length = 676 Score = 42.3 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 17/168 (10%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + K + ++ P E Q P + ED D++ ++ + Sbjct: 85 SRITSKKQKASTSTEQPDLPAPEEPTPQPSPRRGRPPKKRAEDRSDDVARQKKASEGTGK 144 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG------ 685 R+ R + + A + + Q+ + + +E Sbjct: 145 RQTRGKTKNALEPEPEPKPHPHPNPQSERSERSTRKRGEEEQVQQVSVEKKRKKGRPSKS 204 Query: 686 ---------FTENYDVSIPPVSTPEMESSNSSSDPIV--KKTRWWKRR 722 E ++ P ++ + + KK+ RR Sbjct: 205 QEEQRNGFVSPEQPQAGTATIALPVADTPVIQRNKEMRGKKSGKGSRR 252 >gi|302507870|ref|XP_003015896.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371] gi|291179464|gb|EFE35251.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371] Length = 673 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 18/208 (8%), Positives = 53/208 (25%), Gaps = 13/208 (6%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R + + + +V + + + + + + Sbjct: 232 RKRKSVVQHPKKKRKSLLQPPEVPESHETEAKDGSEQLQ----------SSPKDSTPDAG 281 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +++G + V + S + + ++ + ++ DN V Sbjct: 282 LDRG---DSPDPNDPSVPGNEPTESPRVHSPPIIDEQVDEEASEQTDGKEASDNPVVPSP 338 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + P+ + +A V ++ + E N + Sbjct: 339 AAENDVGDLVSENQLPSPEAQEAQGVEPDTAQREGSSVRDQDNTENQVTAPKNSRKRKKK 398 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPI 712 G + S + +S S+ P+ Sbjct: 399 GQGTDAPTQKGKASQKKDKSEGRSTVPV 426 >gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 116-1] gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 116-1] Length = 734 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 20/96 (20%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G +Y KVTR+ AFV GG + G + +I Sbjct: 634 RIEEITAEIE-------VGRVYTGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 683 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTH 109 DY Q+ +L+ + Sbjct: 684 KVTDYLQMGQEVLVKVLEVDRQGRIRLSIKEATEQS 719 >gi|215820598|ref|NP_001135958.1| RE1-silencing transcription factor [Takifugu rubripes] gi|167857755|gb|ACA03866.1| NRSF/REST [Takifugu rubripes] Length = 954 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 3/158 (1%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + F +++ T + S S Q EA + S + + Sbjct: 457 REDFEVDR---DNRDKGTDANPINLSIRRSSRPGNSQSAQTEAPDKVQDKTSRSEREKFG 513 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 +E I R++ +R + + + I + + ++ + Sbjct: 514 KVKEQEKRITTRQKVKRAHEKVPEEEIHPGSTTATKIGDGKAKTKVRKLQAEEQNPTEPN 573 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + ++ D + S+ + K+R Sbjct: 574 QTLKPDQRQSEDKRKMRPDKDKENQSSRKKKKGLNKSR 611 >gi|195470194|ref|XP_002087393.1| GE16349 [Drosophila yakuba] gi|194173494|gb|EDW87105.1| GE16349 [Drosophila yakuba] Length = 5330 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 G D S + EA +S+ D + S S ++ R R Sbjct: 1404 DGESPDYDDIPVSKIPRAANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1463 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R + + A S + + + P + L+ + Sbjct: 1464 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEL 1520 Query: 697 VSTPEMESSNSSSDP 711 S S N+ Sbjct: 1521 DSNKRRSSRNTQRKK 1535 Score = 40.0 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 43/174 (24%), Gaps = 16/174 (9%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I + + DS S + + +S Sbjct: 1406 ESPDYDDIPVSKIPRAANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1465 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + ++ + ++ G + + ++RR R G + Sbjct: 1466 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSELDSNKR 1525 Query: 673 ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ N + + P +SNS++ V+KT Sbjct: 1526 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPTANASNSNAGSDVEKT 1579 >gi|123500047|ref|XP_001327755.1| hypothetical protein [Trichomonas vaginalis G3] gi|121910689|gb|EAY15532.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3] Length = 1073 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 53/194 (27%), Gaps = 6/194 (3%) Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 I V ++K + I + + I + E+ I+ P+ Sbjct: 797 KIHKRRGKQVNELSRSEKSSEIND-QQFNSRKIKLREDDEMIIPQNNIQ-TQPLSPSKRK 854 Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 + E + ++ K + ++ + + +R+R+ Sbjct: 855 IAAPSLSKHRKQHQNPEEAQKIEPIVVVKKKRRHTKPVEQEVPPP---TNEKPKRKRKSH 911 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-ENGAHGFTENYDVSIPP 696 D + D S+ + D + + P + + S Sbjct: 912 VSSKDDQPTPEFLHDRGSVISKSDRQIEAVISPGAVQPLRRKYRKHGMQSPPKKEESQSL 971 Query: 697 VSTPEMESSNSSSD 710 + + ++E + S Sbjct: 972 LQSIDIEDISISRK 985 >gi|270340223|ref|ZP_06007463.2| translation initiation factor IF2 [Prevotella bergensis DSM 17361] gi|270332218|gb|EFA43004.1| translation initiation factor IF2 [Prevotella bergensis DSM 17361] Length = 973 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 1/182 (0%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSP-VQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 EA+ V +A+ IEK P + + + + N E Q+ Sbjct: 183 EAKKEVQPEKKPEKPVAEPEDTIEKTKPEAETQTAEANDGEEKKEPELFQLNSERRIQNA 242 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 + + L+ I N + T R++ R + ++ ++ N Sbjct: 243 PKVNVVGKIDLDAINQNTRPRKKTKEERRKEREDKAKQQGGGRRKRQRINKERVDINAAA 302 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + N P E + K++ + Sbjct: 303 NQQQNGKGGAANRGRGNNANSRGNNRNRRRNQKPVEINEEDIARQVKETLARLKSKQSQT 362 Query: 722 RK 723 RK Sbjct: 363 RK 364 >gi|259533520|sp|B0KWH8|THOC2_CALJA RecName: Full=THO complex subunit 2; Short=Tho2 gi|166832197|gb|ABY90124.1| THO complex 2 isoform 1 (predicted) [Callithrix jacchus] Length = 1600 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 42/170 (24%), Gaps = 7/170 (4%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSE 610 V ++ + ++ + DS + + + L + E Sbjct: 1395 VPRSDIPEPEREQKRRKIDTHPSPSHSSTVKDSLIELKESSAKLYVNHTPAPLSKSKERE 1454 Query: 611 SLEDIQDNIVS---EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + D E + R+ R+R ++ + S Sbjct: 1455 MDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDLIKRRKEENGTMGVSKHKS 1514 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 P + N + + + + E + S K++R Sbjct: 1515 ESPCESPYPNEKDKEKNKS--KSSGKEKGSDSFKSEKMDKISSGGKKESR 1562 >gi|159486197|ref|XP_001701130.1| hypothetical protein CHLREDRAFT_194230 [Chlamydomonas reinhardtii] gi|158272024|gb|EDO97832.1| predicted protein [Chlamydomonas reinhardtii] Length = 620 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 38/150 (25%), Gaps = 6/150 (4%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + P + + + + S+ + D + + R R Sbjct: 50 ASALTVNADAQPKGEDSRDEGRGRDRQRNGGSSKQVADSSGAVNKRRGESPEKDSADRPR 109 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI----TNHNLLENGAHGFTENYDV 692 +R+ + + + + D ++ + ++ G + Sbjct: 110 KRQAIVWEPPTAKEEAEAKEREMEKGRGKESRQEDDRWAGRSDRDREDDEVRGHHQQPQR 169 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S E + + D K+ RR Sbjct: 170 SKDKDRERERDGKDGKRD--SKEKATSSRR 197 >gi|157821507|ref|NP_001101265.1| PHD finger protein 20 [Rattus norvegicus] gi|149030825|gb|EDL85852.1| similar to Hepatocellular carcinoma-associated antigen 58 homolog (predicted), isoform CRA_a [Rattus norvegicus] Length = 1010 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 60/212 (28%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV ++ L ++ P S KN + ++ + Sbjct: 172 ATVNVKKN-QVEKALKTEKRPKPPDKEGKLTCPEKGRVSEKSLPKNEKEDKENISENERE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPEKDLVKSPQETLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFDMYME-PSDITNHNLLENGAHGFTENYDVS 693 S + N + + +EN D Sbjct: 291 SKRSDTPLKRPRLDKNSSQEQSKKRSENSDKD 322 >gi|25136577|gb|AAN65622.1| ELYS transcription factor-like protein TMBS62 [Homo sapiens] Length = 2302 Score = 42.3 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 9/232 (3%) Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQY--TAHNIIVHTHSD 526 ++ + +LE+T+ V + S+ + +L E + ++ T Sbjct: 1851 KKEVNQDILENTSSVGQELQITTGRESKRLKSSQLLEPAVEETTKKEVKVSSVTKRTPRR 1910 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 + + NQ+ I+ + ++ V + + N SD Q Sbjct: 1911 IKRSVENQESVEII-----NDLKVSTVTSPSRMIRKLRSTNLDASENTGNKQDDKSSDKQ 1965 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + + + +LE Q + +E I ++R R R+ P+ D Sbjct: 1966 LRIKHVRRVRGREVSPS-DVREDSNLESSQLTVQAEFDMSAIPRKRGRPRKINPSEDVGS 2024 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 V + S + S + ++ G ++ V +S Sbjct: 2025 K-AVKEERSPKKKEAPSIRRRSTRNTPAKSENVDVGKPALGKSILVPNEELS 2075 >gi|328792223|ref|XP_623719.3| PREDICTED: hypothetical protein LOC551319 [Apis mellifera] Length = 8130 Score = 42.3 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/165 (8%), Positives = 33/165 (20%), Gaps = 7/165 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK +K + + + ++ E++ Sbjct: 839 EKSKEDTEKKGMKPGEKKKQNKSKMEKVRDESEIAMNQANMKEQVKSKNDTKESKEEKNI 898 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + + + V +I N+ + + + Sbjct: 899 EKRNAKDEAKISKEKVEKIQKEKDIKSVENIGNLDQSQKQEDTKSVKLVKSEKISETKVE 958 Query: 686 FTENYDVSIPPVSTPEM-------ESSNSSSDPIVKKTRWWKRRK 723 E + + S D KK K K Sbjct: 959 SKEKEPAKSKEQDKSKKNKKQKQGTENEVSKDQTPKKQGQQKEEK 1003 >gi|114645167|ref|XP_509017.2| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 9 [Pan troglodytes] Length = 1463 Score = 42.3 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 739 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 798 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910 Query: 720 KRRK 723 R + Sbjct: 911 SRER 914 >gi|149209523|ref|XP_001522136.1| hypothetical protein MGCH7_ch7g244 [Magnaporthe oryzae 70-15] gi|86196199|gb|EAQ70837.1| hypothetical protein MGCH7_ch7g244 [Magnaporthe oryzae 70-15] Length = 642 Score = 42.3 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 8/177 (4%) Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK---NIECVWQDEALLP 605 I+V K E + + + + + A + N V+ +E L Sbjct: 193 KISVASNGHTISKEKEKEPPKSPKGRESKSSRAAAAALASHKRRSTLNSRHVYDEEEELR 252 Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 S E+ SE ST +++ R + T G S ++ I D D Sbjct: 253 RAIEASKEEAGTGEPSEGSTKRVKRGRSDSEEKTEFTKRQRTGSRSPTPVDESAIQDDSD 312 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + + + +K+R +RR Sbjct: 313 DGPSKTSSQKSKSRNPTVRNQQRDLQKAEKEEREKQKAEAANK-----RKSRAERRR 364 >gi|332839598|ref|XP_001165201.2| PREDICTED: protein SCAF11 isoform 8 [Pan troglodytes] Length = 1463 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 739 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 798 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910 Query: 720 KRRK 723 R + Sbjct: 911 SRER 914 >gi|114645171|ref|XP_001165167.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 7 [Pan troglodytes] Length = 1437 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900 Query: 720 KRRK 723 R + Sbjct: 901 SRER 904 >gi|321473434|gb|EFX84401.1| hypothetical protein DAPPUDRAFT_222916 [Daphnia pulex] Length = 1418 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 41/316 (12%), Positives = 84/316 (26%), Gaps = 38/316 (12%) Query: 424 VVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKV 483 + D ++N R V K + ++KD+ N L+E R+ +S E ++ Sbjct: 1124 LCDPEAAVAEENFRVVLKGIIVLIQKDKQ--------NESLVEKIILRLGASRTERQSRD 1175 Query: 484 CTYC------KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA 537 YC R I + E + + + + + R Sbjct: 1176 LMYCLSLLSFNERSLRRILEHW-NCISDKIHEEGV---VETLNAILTTTKKAFAKQEIRG 1231 Query: 538 TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 I E EA+ ++ + + + + + + Sbjct: 1232 LIDEIEAKIQETV------DADQDEQQVVRKAQATQVTKAQAPKNKPKRKQRAKDLDSEE 1285 Query: 598 W----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 DE +P + N S G + R++ + ++ V + Sbjct: 1286 EVSMDDDEPEMPGHPAHLGTPHSPNKKSPLRHG---RNIRKKIAIPQVSSDDESSVEEEK 1342 Query: 654 SSIQNVIDDSFDMYMEPSDITN-------HNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + + + N + DV I P S ++ Sbjct: 1343 DDDDDSEKEDRKAQLAAKSKKNMGSTRSIRATRRQTEADSGSDQDVFIKPASRGKLNPGK 1402 Query: 707 SSSDPIVKKTRWWKRR 722 + K T RR Sbjct: 1403 NKLPEKKKSTTTRSRR 1418 >gi|194853302|ref|XP_001968138.1| GG24671 [Drosophila erecta] gi|190660005|gb|EDV57197.1| GG24671 [Drosophila erecta] Length = 5335 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 G D S + EA +S+ D + S S ++ R R Sbjct: 1409 DGESPDYDDIPVSKIPRGANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1468 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R + + A S + + + P + L+ + Sbjct: 1469 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEM 1525 Query: 697 VSTPEMESSNSSSDP 711 S S N+ Sbjct: 1526 DSNKRRSSRNTQRKK 1540 Score = 41.9 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 16/174 (9%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I +G+ DS S + + +S Sbjct: 1411 ESPDYDDIPVSKIPRGANEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1470 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + ++ + ++ G + + ++RR R G + Sbjct: 1471 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKR 1530 Query: 673 ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ N + + P +SNS++ V+KT Sbjct: 1531 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKT 1584 >gi|194770864|ref|XP_001967507.1| GF20705 [Drosophila ananassae] gi|190618517|gb|EDV34041.1| GF20705 [Drosophila ananassae] Length = 580 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 45/216 (20%), Gaps = 8/216 (3%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 ++ + + + + + R ++ V + EK Sbjct: 85 RNIAVKDEIKEESGESPPAPAIRIKQEPLDDEEDLWGRKAATVKVKDEFSPQKRQIKQEK 144 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 S + L K + S + Q S+ + Sbjct: 145 RSRSRDLSPERSKKKKNHPDQSPPRRKADRDQSPRGRKRKDSDQSPPRRARDSP-----P 199 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R++ R+R ++D D + P + + Sbjct: 200 RRRQDASPVRKRRSSDQSPPRRRRDDDQSPPRRRRNDSDQSPPRKRREPSPV---RRRRD 256 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + S + RR+ Sbjct: 257 SDQSPPRKRRDDDLSPPRRKSPPRRQDDDQSPPRRR 292 >gi|110764360|ref|XP_395879.3| PREDICTED: hypothetical protein LOC412422 [Apis mellifera] Length = 1811 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 57/218 (26%), Gaps = 23/218 (10%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 I V L+ + R + E + I L I S Sbjct: 736 DNESEITEVHDLQDVEELIKRDRKSRKREEKKS--PIIFEENKNLVPPSVSITPISSSSL 793 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 T + + + P S I +S + +RR Sbjct: 794 GQTTNYNSVLTGMGL----ERRPGIEIIPIAPQTTLPSSITITPIPAPSQSKSLTDERRE 849 Query: 634 RRRRRRPATDHH------------DAGVVSDVSSIQNVIDDSFD---MYMEPSDITNHNL 678 R+ + +T+ D+ + I + D + ++P++ + Sbjct: 850 RKSSKGKSTEDKGKLEKRRKRKREDSPMGPPPDKIPSKQDPLSKPVSVSIKPTESPPNMS 909 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + T P ++P S P +K++ Sbjct: 910 SRPSSPATTLRKFSPSPTHTSPLA--LVGKSSPTLKQS 945 >gi|83589898|ref|YP_429907.1| translation initiation factor 2 [Moorella thermoacetica ATCC 39073] gi|123752933|sp|Q2RJM5|IF2_MOOTA RecName: Full=Translation initiation factor IF-2 gi|83572812|gb|ABC19364.1| bacterial translation initiation factor 2 (bIF-2) [Moorella thermoacetica ATCC 39073] Length = 903 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 12/157 (7%), Positives = 39/157 (24%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + G + + E P + + + Sbjct: 137 RQAGDAPAAEGTAAAGQPLDGKELRQAVANGQGTEEPRQQPAATGQRAQGGEAGRGQQSR 196 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +KRR R R+ ++ + ++ P++ + Sbjct: 197 QKKKRRGEGRSRQDENKGSAREDQANRFATRDKEAAPSAGQQSPAEKGQRRPAHSKPLRI 256 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + SN+ ++ ++R+ Sbjct: 257 PKPPEAVTKDLPEKRRDRSNARPGAKPAESGRSRKRE 293 >gi|324499538|gb|ADY39804.1| Msx2-interacting protein [Ascaris suum] Length = 3599 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 42/313 (13%) Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 +DM +K + VEK L E IS F EM+++ + ES+ K Sbjct: 2036 VDMPPEKKKQKVEKSLVE-------------ISMF--PEMNKKEPKQKKKESSRKTSEVK 2080 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--- 544 K ++Q S + + + L + ++ + E Sbjct: 2081 KAKEAEKAQVSKTEQFEKKLAKRLRKEQKEREEEQKREADESKKKKEENRIERDIEKSSG 2140 Query: 545 RFGVSINVVI----------------GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 + G +V + + E + A Sbjct: 2141 QTGKEKEIVKTEKENREEEEDNIQKMEVTAETQHDEKESMKTETQSEEMPQNEVVEEAAV 2200 Query: 589 SYD-----KNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIRKRRRRRRRRRPA 641 + ++I+ +E + + ++ E+I D E R+R+R+ Sbjct: 2201 KEEYECSCESIDEKQLEEGIKQDDEHKTNENIVDLGEKPPLEDEVNERERKRKADENEGV 2260 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + DS E T + + +S P Sbjct: 2261 FDVKRVKEETKEEMPRKQLSDSDSSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEP 2320 Query: 701 EMESSNSSSDPIV 713 +SS +++ Sbjct: 2321 RSDSSTTAAVKSE 2333 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 59/229 (25%), Gaps = 17/229 (7%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 ++ EE V + +++K + E Sbjct: 2174 HDEKESMKTETQSEEMPQNEVVEEAAVKEEYECSCESIDEK-----QLEEGIK-----QD 2223 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 ++ P + + +++ V ++ K S D Sbjct: 2224 DEHKTNENIVDLGEKPPLEDEVNERERKRKADENEGVFDVKRVKEETKEEMPRKQLSDSD 2283 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 +++T + +RR R+R + + S S +T Sbjct: 2284 SSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEPRSDSSTTAAVKSELSEESERLLT 2343 Query: 675 NHNLL-------ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + E + ++ D S + + + + S + +T Sbjct: 2344 PSDTVVKPCVVDEPASEKYSLLEDASKWGAESAKSVTDDDESASVSART 2392 >gi|321468122|gb|EFX79109.1| hypothetical protein DAPPUDRAFT_319863 [Daphnia pulex] Length = 4355 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 34/137 (24%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 S ++P + E++E S+ + ++ ++ + Sbjct: 3137 KNENSTKESPDVEGIAPEAMDVSKPEEKECVENVEKSNQEEPSDSNKDDDKQEEKKSKDV 3196 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 ++ D + + + E + E+ V Sbjct: 3197 EDPSESEDESKTLEKKAESTEGEPKSSQKDEEVKNDTSENEKEAVVIKPESTTVEEITED 3256 Query: 699 TPEMESSNSSSDPIVKK 715 TP + VKK Sbjct: 3257 TPVHVKEEVTKLKPVKK 3273 >gi|124487307|ref|NP_766262.2| PHD finger protein 20 [Mus musculus] gi|32699545|sp|Q8BLG0|PHF20_MOUSE RecName: Full=PHD finger protein 20; AltName: Full=Hepatocellular carcinoma-associated antigen 58 homolog gi|123212046|emb|CAM26751.1| PHD finger protein 20 [Mus musculus] gi|148674241|gb|EDL06188.1| mCG5243, isoform CRA_b [Mus musculus] Length = 1010 Score = 42.3 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171 Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 V++NV L + + S KN + ++ + Sbjct: 172 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 227 Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + E + +E+ +++R R P ++ + ++ Sbjct: 228 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 287 Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693 S + N + + +EN D Sbjct: 288 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 322 >gi|296234002|ref|XP_002762256.1| PREDICTED: hypothetical protein LOC100394361 isoform 1 [Callithrix jacchus] Length = 714 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 41/152 (26%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 Q+ + S S++PS K+ +S +D S + + Sbjct: 387 SQSESPNKQRDCSRSRSPSEKKDHSQSGSPNKERDHSQSRIPSKEKDLSRSGSPSKERDQ 446 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R R R R P+ + S S + + + + Sbjct: 447 ERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQ 506 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + +P E S K++ R Sbjct: 507 ERARGRSRSPSQERDRGRSGSPSKESERRHSR 538 Score = 41.1 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 17/142 (11%), Positives = 38/142 (26%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK Q+ + S S+ PS +K++ ++ + + Sbjct: 406 EKKDHSQSGSPNKERDHSQSRIPSKEKDLSRSGSPSKERDQERARGRSRSPSQERARGRS 465 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R R R P+ + S S + + + Sbjct: 466 RSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRS 525 Query: 686 FTENYDVSIPPVSTPEMESSNS 707 + + + +P E + Sbjct: 526 GSPSKESERRHSRSPSQERARG 547 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 1/153 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q+ + + K S S +PS +++ E ++ + + Sbjct: 421 DHSQSRIPSKEKDLSRSGSPSKERDQERARGRSRSPSQERARGRSRSPSQERARGRSRSP 480 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R R R R P+ + S S + + + H + Sbjct: 481 SQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRSGSPSKESERRHSRSP 540 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + +P + + K R R Sbjct: 541 SQERARGCSRSP-SQERDHGRSGSPSKERERGR 572 >gi|256396921|ref|YP_003118485.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928] gi|256363147|gb|ACU76644.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM 44928] Length = 795 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 38/156 (24%), Gaps = 8/156 (5%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + + + + + Sbjct: 618 ADADPATAPSSTDETEKPKRTRTRSRANAAEASSIATDATADATAEAEADTAALPSAEES 677 Query: 630 KRRRRRRRRRPATDHHDAGVV--------SDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 ++ +R R R + ++V+ + S E + T + E Sbjct: 678 EKPKRTRSRSRKPEAEQTEEAALVTEPATAEVTLPKQAGPRSRANAAEQTADTATAVEET 737 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 T + S V+ S ++ K+TR Sbjct: 738 AEPKRTRSRGRSATAVAETVEVSVGAADPGKPKRTR 773 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 13/169 (7%), Positives = 41/169 (24%), Gaps = 9/169 (5%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-- 613 +A + + A + + + + +++ Sbjct: 558 DTMATESAEAGTVAVADASAVIETAADEAEKPKRTRTRTRSNADETSAVAADVADTTPVT 617 Query: 614 -DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 D + + +R R R R + +A ++ ++ + D PS Sbjct: 618 ADADPATAPSSTDETEKPKRTRTRSR---ANAAEASSIATDATADATAEAEADTAALPSA 674 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + + ++ + K+ R Sbjct: 675 EESEKPKRTRSRSR---KPEAEQTEEAALVTEPATAEVTLPKQAGPRSR 720 >gi|37805450|gb|AAH60121.1| Phf20 protein [Mus musculus] Length = 1023 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 14/215 (6%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171 Query: 548 VSINVVIGI---ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 V++NV L + + S KN + ++ + Sbjct: 172 VTVNVKKDKVEKALKTEK----RPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISEN 227 Query: 605 PIP-----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + E + +E+ +++R R P ++ + ++ Sbjct: 228 EREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRR 287 Query: 660 IDDSFDMYME-PSDITNHNLLENGAHGFTENYDVS 693 S + N + + +EN D Sbjct: 288 RKISKRSDTPLKRPRLDKNSPQEQSKKRSENSDKD 322 >gi|325114361|emb|CBZ49918.1| tryptophan-rich antigen (Pv-fam-a), related [Neospora caninum Liverpool] Length = 655 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 37/154 (24%), Gaps = 1/154 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + A ++ + E P + E+ + + EE Sbjct: 219 KEEEEKPGVRKEEEKKKPAVREEEEKKKPAVREEEETKPAVGNQEEEKPGVRKEEEEEKP 278 Query: 629 RKRRRRRRRRRPATDHHDAGV-VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R+ + + V + + +P+ T + Sbjct: 279 GVRKEEEEEKPGVREEEKKKPGVRKEEEEKKPAVRKEEEEKKPAVGTEEADKKPAVGERE 338 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E ++ + + + KK KR Sbjct: 339 EKKKPALGKKEKKRRKPAVGKREEKKKKPALGKR 372 >gi|322704835|gb|EFY96426.1| transcription factor TFIID complex subunit Taf111 [Metarhizium anisopliae ARSEF 23] Length = 1230 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 50/182 (27%), Gaps = 4/182 (2%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E V TT+ C C G+I++ + A + + + V Sbjct: 1045 EAGSPGAVDKVPTGTTRKCANCGQVGHIKTNKNAASH--KEGQAVPTKKQTRRKSVLHRL 1102 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 ++R + E R V +A + +++ + + + + + Sbjct: 1103 MKSSNREAREREKRRQIEERATAR-KVRKEENMA-EKLKVQREREQKKIEDARLREEARR 1160 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 Q + + ++ ++ E + + +R+R Sbjct: 1161 QEDQAREEKKRRQEELRAEKQQQANEQRRKAQEEREERRRLRLEREEENQRKREEKAKAR 1220 Query: 646 DA 647 Sbjct: 1221 PK 1222 >gi|147742927|sp|Q5U241|PD5BB_XENLA RecName: Full=Sister chromatid cohesion protein PDS5 homolog B-B; AltName: Full=Androgen-induced proliferation inhibitor B Length = 1464 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 43/184 (23%), Gaps = 4/184 (2%) Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 R + + P G K + + E +++ L Sbjct: 1216 RRGRKQPLIDPDDSFSMDELSKPAQEPKSRTSQRGRKRAAAASESEEQAWQEKRLKEDLL 1275 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 + S +S + + + + S + ++ ++ S Sbjct: 1276 ENEDEQNSPPKKGRRGRPPKSAKMAISKEEPPVTTPKRGRKNVVPIESPPTDEEDHLEIS 1335 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV----KKTRWW 719 + E D + + S S P + KK+ Sbjct: 1336 EEQDSENIDQKRKGRGSSKKTPQKSDSTDSALDTSRPTPQKRRGRPPKTPTVQQKKSHVG 1395 Query: 720 KRRK 723 + RK Sbjct: 1396 RPRK 1399 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 27/238 (11%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 +Q + + R + + L N+ + R G Sbjct: 1238 PAQEPKSRTSQRGRKRAAAASESEEQAWQEKRLKEDLLENEDEQNSPPKKGRRGRPPK-- 1295 Query: 554 IGIELADKLFYIEKGSP-VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK---- 608 I K P V V P+ +++ + +++ I + Sbjct: 1296 ------SAKMAISKEEPPVTTPKRGRKNVVPIESPPTDEEDHLEISEEQDSENIDQKRKG 1349 Query: 609 ---SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 S+ D+ S T ++RR R + T V + + +S + Sbjct: 1350 RGSSKKTPQKSDSTDSALDTSRPTPQKRRGRPPKTPTVQQKKSHVGRPRKVVSKEPESEE 1409 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + +EN + + E+ + ++ KK RW +R K Sbjct: 1410 EMEISQN----------SPALSEN-ISNEEETADEEVVAPSTGRRRTAKKRRWIQRMK 1456 >gi|284520926|ref|NP_001088643.2| sister chromatid cohesion protein PDS5 homolog B-B [Xenopus laevis] Length = 1449 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 43/184 (23%), Gaps = 4/184 (2%) Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 R + + P G K + + E +++ L Sbjct: 1216 RRGRKQPLIDPDDSFSMDELSKPAQEPKSRTSQRGRKRAAAASESEEQAWQEKRLKEDLL 1275 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 + S +S + + + + S + ++ ++ S Sbjct: 1276 ENEDEQNSPPKKGRRGRPPKSAKMAISKEEPPVTTPKRGRKNVVPIESPPTDEEDHLEIS 1335 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV----KKTRWW 719 + E D + + S S P + KK+ Sbjct: 1336 EEQDSENIDQKRKGRGSSKKTPQKSDSTDSALDTSRPTPQKRRGRPPKTPTVQQKKSHVG 1395 Query: 720 KRRK 723 + RK Sbjct: 1396 RPRK 1399 >gi|195494091|ref|XP_002094690.1| GE21967 [Drosophila yakuba] gi|194180791|gb|EDW94402.1| GE21967 [Drosophila yakuba] Length = 348 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 43/190 (22%), Gaps = 13/190 (6%) Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 S+ L +++ + E + + + EK Sbjct: 75 VPSEPADVLEDEQNTPLYEILQKQMEQVLASSAPNDPVYEQHREKQERRDQKPPHQPPYF 134 Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG----------VIRKRR 632 S ++ +D+ P D +E G ++ Sbjct: 135 SGGDRDGELQDDYEDEEDQTDQGYPADPEKPDAVSGAPDDEDPGYQAPSLSLPSSNTRKP 194 Query: 633 RRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 RRR +P T ++ + + + T G H T Sbjct: 195 YRRRSTTTFQPRTTRTRTSAQPRTTARPLNQTSTTEQSSTVTTTTPRPKSSAGTHSKTTP 254 Query: 690 YDVSIPPVST 699 + P Sbjct: 255 QPGNSTPSDP 264 >gi|75676201|ref|YP_318622.1| hypothetical protein Nwi_2011 [Nitrobacter winogradskyi Nb-255] gi|74421071|gb|ABA05270.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 425 Score = 42.3 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 35/160 (21%), Gaps = 16/160 (10%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + I G+ Q K + + P + + Sbjct: 82 YLISNGATDQRRRVEPPKSHPGDLRTEPRQTERQGRKPLPQATQP--------PEAAAPQ 133 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDA--------GVVSDVSSIQNVIDDSFDMYMEPSDIT 674 R RR +R+P + S + + Sbjct: 134 NEAQGSRDRRTPANKRKPGKQSPEEAAKAGAAGQGASPSDAAAKPETAKTEPSGATPPKE 193 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 N + E A G T S + + ++ D K Sbjct: 194 NEAVKEEAAQGKTAKGAASNAGPAKEDAAEDKAAKDEAPK 233 >gi|225439645|ref|XP_002269679.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 858 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + K + + + + + ++ L K E+ +D E+ + Sbjct: 261 RRKAEEKRQARLEKELLEEEERKQREEVARLVEERRRLRDEKMEAEKDRGKPPFREKDSK 320 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++R+ RR+ D G S + + + ++ + ++ H Sbjct: 321 KEAEKKRQERRK-----ERDKGSSKSNSDAEEMERKAGKESERKRELDRKSEIDRREHQK 375 Query: 687 TENYDV 692 T Sbjct: 376 TGTEIS 381 >gi|325118333|emb|CBZ53884.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 2941 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 10/120 (8%), Positives = 27/120 (22%), Gaps = 8/120 (6%) Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + + + + +++ R H + + S + + Sbjct: 1561 ATKRGTPGKREDSAPEAGKRKNHPENSRERFGRHGETEAEREDSESEGKKTPGGEETAGR 1620 Query: 671 SDITNHNLLENGAHGF-TENYDVSIPPVSTPEMESSNSSSDPIVKKT-------RWWKRR 722 ++ + A + + DP +K WW R Sbjct: 1621 NERQDAKRTPGTAEAAFSSFSASPKERKGRKGANTEQHKVDPPRRKPENLSVAESWWDER 1680 >gi|316973156|gb|EFV56779.1| RNA polymerase-associated protein CTR9-like protein [Trichinella spiralis] Length = 1189 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 5/156 (3%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 IE+ + + T + + E D++ L + + Sbjct: 908 IERTKKLLI-MPTFEEEKPKRAPKGRKRKDEEFVNDDSDLGDWEPGRQSLPKKRKPKALP 966 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD-SFDMYMEPSDITNHNLLENGA 683 ++ +RR R TD ++VS +N + S + + I + +L + + Sbjct: 967 KERRGRQNEKRRLRTATTDSEAEASTANVSKPKNRREALSDLNAKQKAKIKSREILSSTS 1026 Query: 684 HGFTENYDVSIPPVS---TPEMESSNSSSDPIVKKT 716 D P + TPE + S+ + K+ Sbjct: 1027 SSGDSAKDAMERPSTYLGTPEQSDVSQSNIVVKKED 1062 >gi|311266603|ref|XP_003131160.1| PREDICTED: m-phase phosphoprotein 8-like isoform 2 [Sus scrofa] Length = 864 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 14/162 (8%), Positives = 39/162 (24%), Gaps = 5/162 (3%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 E + EK + D + +D K Sbjct: 278 EADSEDSQPEHREEKQMKGARDKAEPDALPEAGFEQQQDGALSADEEDARAKRKKKRPRK 337 Query: 613 EDIQDNIVSEEST---GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + + E+ + ++++R + +A ++ S S Sbjct: 338 TEEPKESRTPENKSPLSEKKPVQKKQRNQDRGRSGAEAEKLAPASPP--AQSGSRPGADS 395 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 P +++ +G T+ + +++ Sbjct: 396 PEEVSAGQGGGSGPEKETQKNEPKEKYQKRQDLDKDEKGRRE 437 >gi|195573522|ref|XP_002104741.1| GD18284 [Drosophila simulans] gi|194200668|gb|EDX14244.1| GD18284 [Drosophila simulans] Length = 647 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 43/174 (24%), Gaps = 17/174 (9%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + + + +D P + S D + Sbjct: 215 RNDKHSPARKRRDSDQSPPRKRTGKASPTRRRRDADQSPPRRRRSNSDQSPPRRRRDKDS 274 Query: 627 VIRKRRR-------RRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +RRR RRR+ RR D + S Q+ + D P Sbjct: 275 TPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRGSDQSPVRRRRDSDQSPPR 334 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTRWWKRRK 723 + + P P + P K+ + +RR+ Sbjct: 335 RRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPNKKRDKSPRRRR 388 Score = 41.9 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 38/153 (24%), Gaps = 1/153 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SD P K + +S + + Sbjct: 267 RRRRDKDSTPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRGSDQSPVRRRR 326 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + RRRR T + +D + + N + + Sbjct: 327 DSDQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPNKKRDKSPRR 386 Query: 687 TENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D S P +S + +K+RW Sbjct: 387 RRDSDQSPPRNQRSRDQSPPPRNRFREERKSRW 419 Score = 40.7 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 18/218 (8%), Positives = 47/218 (21%), Gaps = 3/218 (1%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR--FGVSINVVIGIELADKLFYI 565 ++ + + + + E R V + I Sbjct: 88 RNIAVKDEIKEEHEESSPAPGIRIKQEPLDEEQEMWGRKATVVKVKDEFSPSRRKSPVRI 147 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + ++ + P + + +S Sbjct: 148 KQEKRSSSRDLSPARSRKPAKREECPQRGRRRAASSDQSPPRRGRDGDQSPPRRKRRDSD 207 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+ R + PA D+ + S + + Sbjct: 208 -QSPPRKARNDKHSPARKRRDSDQSPPRKRTGKASPTRRRRDADQSPPRRRRSNSDQSPP 266 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S PP + + S ++ + RK Sbjct: 267 RRRRDKDSTPPRRRRDSDQSPPRRRKADDQSPVRRERK 304 >gi|149411344|ref|XP_001509835.1| PREDICTED: similar to interleukin 13 receptor alpha 1-binding protein-1 isoform 2 [Ornithorhynchus anatinus] Length = 711 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 34/154 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ + E + + + E ++ +E Sbjct: 211 HKDHEWEKLKEGEKDRNKNRISKQEKETEKSKDKERGKKEDKEREKDSEHDKEKEKKSSG 270 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R R+R + + E + Sbjct: 271 GRERDRQREKDKDKGKEREKDKRKERLRDGERSKEKERNKEQDKAEKKSTGSEETPSTKV 330 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P+ E+ NS+ T+ +RR Sbjct: 331 SAGPVKEAKPYPDKEAENSTKTARSVVTKVSRRR 364 >gi|127511879|ref|YP_001093076.1| band 7 protein [Shewanella loihica PV-4] gi|126637174|gb|ABO22817.1| band 7 protein [Shewanella loihica PV-4] Length = 595 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 18/181 (9%), Positives = 44/181 (24%), Gaps = 1/181 (0%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 ++ +KR + E + I +E + IEK LV ++ + Sbjct: 217 IIEEKRKETNDIEQENRIKIE-QRNLEAEKESLEIEKAEEEARLVQQQALEFKRAEQKAE 275 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + E E + +++ ++R+ + R Sbjct: 276 ILKKQEQKSREEREAEIAKERAVETAQIEKTKDIETREIEKRKAIEQSRIQQQRDIEVAE 335 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 D + + +E T E+ + ++ Sbjct: 336 QDKQIAVAQKSEEESAARAKAAEAEKLKVEKEEAVITVRQVAEANRRKEIEVIDARKEAE 395 Query: 711 P 711 Sbjct: 396 R 396 >gi|152987584|ref|YP_001347332.1| hypothetical protein PSPA7_1951 [Pseudomonas aeruginosa PA7] gi|150962742|gb|ABR84767.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 386 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 10/118 (8%), Positives = 17/118 (14%) Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + S R+R RR Q + Sbjct: 265 TTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDGDNAGRRTPASRSSRGPQPGAER 324 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 P + + P P P Sbjct: 325 KGREQGTPVAERPRESNRKPRPSKPRDERPAGAPGDKPAARKPQVKRRPKPAGDGMRP 382 >gi|126328923|ref|XP_001366152.1| PREDICTED: similar to SPEN homolog, transcriptional regulator isoform 2 [Monodelphis domestica] Length = 3597 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 4/178 (2%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E EA V +E + V SD ++ + + Sbjct: 2301 AESEAEMATEPLVQAEMEPETDQ-AVSGILETDNAVEPSVPPASDPAPSAHPGDPKDPEG 2359 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQN 658 + + P E +Q+ VS + + R RR+R D +A + + Sbjct: 2360 NTTVSPSSAQEPEVVLQETEVSRKDRVRQKSTRSRRKRSTSKKGDAVEANALESEQAPNK 2419 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTE--NYDVSIPPVSTPEMESSNSSSDPIVK 714 S P +N +E D S P + + DP K Sbjct: 2420 CPVTSELKLKPPETPKEDKQNKNSHPVSSEPNPTDSSKNPANETITIELVAEEDPPAK 2477 >gi|17986031|ref|NP_523441.1| kismet, isoform A [Drosophila melanogaster] gi|7230509|gb|AAF43004.1|AF215703_1 KISMET-L long isoform [Drosophila melanogaster] gi|22945599|gb|AAF51527.3| kismet, isoform A [Drosophila melanogaster] Length = 5322 Score = 42.3 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 G D S + EA +S+ D + S S ++ R R Sbjct: 1399 DGESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1458 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R + + A S + + + P + L+ + Sbjct: 1459 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEM 1515 Query: 697 VSTPEMESSNSSSDP 711 S S N+ Sbjct: 1516 DSNKRRSSRNTQRKK 1530 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 44/174 (25%), Gaps = 16/174 (9%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I +GS DS S + + +S Sbjct: 1401 ESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1460 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + ++ + ++ G + + ++RR R G + Sbjct: 1461 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKR 1520 Query: 673 ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ N + + P +SNS++ V+KT Sbjct: 1521 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKT 1574 >gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like [Pongo abelii] Length = 1532 Score = 42.3 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 13/168 (7%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F + T K D + + + +E +P S S Sbjct: 1308 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDEEDFVPSDASP-----PKTKTS 1362 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + T K ++ A D D+ +S SS P N + + Sbjct: 1363 PKLTNKELKPQKSAVSDLEADDAKDSIPLS--SSPPATRFPDETEITNPVPKKNVTVKKT 1420 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723 A + + P+ + S P KT+ ++RK Sbjct: 1421 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1468 >gi|198463597|ref|XP_002135540.1| GA28265 [Drosophila pseudoobscura pseudoobscura] gi|198151328|gb|EDY74167.1| GA28265 [Drosophila pseudoobscura pseudoobscura] Length = 329 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 39/174 (22%), Gaps = 11/174 (6%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP---KSESLEDIQD 617 + K + P + + SE ++ Sbjct: 136 PHYSDVKHASDANQQWAPANPSGSDDVPPPLVAAHAGLPPQPPDEVVVDFDSEESLPLET 195 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + ++ +R RR T + + Q + E + Sbjct: 196 KPTNNDAAAAKERRGIRREPNPTTTTQQRPKRDEEYAENQTQQQRRSNGQRETRNTPGTK 255 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESS--------NSSSDPIVKKTRWWKRRK 723 N A E + P + +++D K R RR+ Sbjct: 256 PNNNDAAAAKERRGIRREPNPPTTTQQRPKRDEEYVENNNDAATAKERRGIRRE 309 >gi|156555550|ref|XP_001604032.1| PREDICTED: similar to jumonji domain containing 1B [Nasonia vitripennis] Length = 1971 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 32/141 (22%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 S + ++ + S +D+ SE KR+ + +R+ Sbjct: 863 KSKVSIKARKTPVKESVNGHTAAAAATANSESLHEDSSNSEPERKAPPKRKAPKVKRKKG 922 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 V + + V T E Sbjct: 923 AAWKQQTAVQEQRRRKKQKQGRGSAAAGSESSNESEPGSLSDSSEQRLSINDRAVVPTLE 982 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 + + + V K R K R Sbjct: 983 TFKGSGNGNKKVPKKRGRKPR 1003 >gi|154279422|ref|XP_001540524.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150412467|gb|EDN07854.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 390 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 46/179 (25%), Gaps = 14/179 (7%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++ + E+ + + + + + P+SE Sbjct: 74 QIIKREAAKQEELATEQEEKPTPRGPKRAPLKPQAPKRASISVSQPARKRRRTATPPESE 133 Query: 611 SLEDIQDNIVSEESTGVIRKRRRR--------------RRRRRPATDHHDAGVVSDVSSI 656 + SEE G K R+R + + + + +SDV + Sbjct: 134 EELSSPPSEGSEEEKGKAPKSRKRAHPENKASKPVKQTPKPKPAPSKADTSSELSDVIDV 193 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + + + + PP T +SS S KK Sbjct: 194 SENLSERTSLKGATQKDEPSETKHDESESEMSVVIDDEPPPKTKRRKSSESLKQGKTKK 252 >gi|118096907|ref|XP_001233428.1| PREDICTED: similar to Setd5 protein [Gallus gallus] Length = 1446 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 3/161 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE--- 622 E S V G SD++ ++ E ++ + S +D V Sbjct: 481 ENISQQTEEVPEGPAAVSDNEVADKEEKQEEEKEESVDEQGTLAHSRRSREDRKVEAIMH 540 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + +++RRR + + + + S+ ++ V ++ + S ++ Sbjct: 541 MFENLEKRKRRREQPSDRNSTDAEVSINSEAPELEEVKTETPETEDASSTLSATAASNVS 600 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + K +R + + Sbjct: 601 NSNISTGVNTRRSSQVADAVPEKTVTKPAPAKPSRPRPKSR 641 >gi|221330583|ref|NP_001137761.1| kismet, isoform C [Drosophila melanogaster] gi|220901895|gb|ACL82968.1| kismet, isoform C [Drosophila melanogaster] Length = 5517 Score = 42.3 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 G D S + EA +S+ D + S S ++ R R Sbjct: 1399 DGESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSR 1458 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R + + A S + + + P + L+ + Sbjct: 1459 RNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPP---SPPPDSEM 1515 Query: 697 VSTPEMESSNSSSDP 711 S S N+ Sbjct: 1516 DSNKRRSSRNTQRKK 1530 Score = 41.5 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 44/174 (25%), Gaps = 16/174 (9%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I +GS DS S + + +S Sbjct: 1401 ESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKRSTARSRRN 1460 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + ++ + ++ G + + ++RR R G + Sbjct: 1461 ANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDSNKR 1520 Query: 673 ITNHNLLEN----------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ N + + P +SNS++ V+KT Sbjct: 1521 RSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKT 1574 >gi|85080381|ref|XP_956534.1| hypothetical protein NCU01623 [Neurospora crassa OR74A] gi|7800965|emb|CAB91363.1| related to neurofilament-H protein [Neurospora crassa] gi|28917601|gb|EAA27298.1| predicted protein [Neurospora crassa OR74A] Length = 837 Score = 41.9 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 41/156 (26%), Gaps = 2/156 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + + + + + E + + + E+ +I + E Sbjct: 610 AVSNTNTRKRKASAPIVINDSESDGDLSDPPEELLEADKEAENDPVEAEPEIPPSDEDEN 669 Query: 624 STGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 ++R R A G + + + S + S + E+ Sbjct: 670 GDEEEELPRKRGRPVATATAAVAPTKGKRGRPPKNKVLQEVSASSARKNSRSKSKRQAES 729 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + ++ D + + E+ + K R Sbjct: 730 DSDDQYQDQDQDLKKDPEEQEEAGAVTEKGSNKDDR 765 >gi|188584474|ref|YP_001927919.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] gi|179347972|gb|ACB83384.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] Length = 718 Score = 41.9 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 13/152 (8%), Positives = 32/152 (21%), Gaps = 16/152 (10%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + + P + + E P + E + R+ Sbjct: 70 ERGGPPARERPDRPERPERPEPRQAPAARERPDPAERPARPERPAPQERPDRQERPERQE 129 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R+ R + + + + + P Sbjct: 130 RPDRQERPDRQERPERQERPERQERPERPERAPAPAQRPDRSEE---------------- 173 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 PP + + + + RR+ Sbjct: 174 RPTPPAARERTPDREAPARRETPEREAPARRE 205 >gi|47213693|emb|CAF94586.1| unnamed protein product [Tetraodon nigroviridis] Length = 1032 Score = 41.9 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 28/143 (19%), Gaps = 2/143 (1%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 G + DS K + + ++ ++ R R Sbjct: 110 EGARYTYDSTGRRDRKQDVVEKHERVKDKERHRDKEKERDARKEEKDKERRRHHRAESER 169 Query: 637 RRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 RR+ + + + + SD G N + Sbjct: 170 RRQEESGEGGFKKQERDKREKHGDRERHTDEYRERKSDRERRERHSEGREDKGHNEEHRR 229 Query: 695 PPVSTPEMESSNSSSDPIVKKTR 717 ++ R Sbjct: 230 QREEKERRREDRDQQQEKRRRDR 252 Score = 39.2 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 33/151 (21%), Gaps = 12/151 (7%) Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 ++ + + +S + D G +R + RR Sbjct: 11 GESTERRRRELEKESKKERDKQRESTREKKEDDRYAERRKEGSRDRRGDKERREETNKRE 70 Query: 645 HDA--GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL----------ENGAHGFTENYDV 692 D G + + D D+ G ++ Sbjct: 71 QDRFGGADRNSHDSRERRDRRNDIEKREERDRRERDRALEGARYTYDSTGRRDRKQDVVE 130 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 V E K+ + +RR+ Sbjct: 131 KHERVKDKERHRDKEKERDARKEEKDKERRR 161 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 42/163 (25%), Gaps = 8/163 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-----SLEDIQDNIV 620 E+ + + + + + ++ + E E D ++ Sbjct: 133 ERVKDKERHRDKEKERDARKEEKDKERRRHHRAESERRRQEESGEGGFKKQERDKREKHG 192 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E + R+ R RR + H G + ++ Sbjct: 193 DRERHTDEYRERKSDRERR---ERHSEGREDKGHNEEHRRQREEKERRREDRDQQQEKRR 249 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +E + + V + S D +K R + ++ Sbjct: 250 RDRDVASEEREGASDKVRHHRGDKERSERDRHREKGRHGREKE 292 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 40/163 (24%), Gaps = 11/163 (6%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + Y + + +D + E+ + QD + + Sbjct: 27 KERDKQRESTREKKEDDRYAERRKEGSRDRRGDKERREETNKREQDRFGGADRNSHDSRE 86 Query: 632 RRRRRRRRPATDHHDAGVVS----------DVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 RR RR + D D + ++ D + + D H E Sbjct: 87 RRDRRNDIEKREERDRRERDRALEGARYTYDSTGRRDRKQDVVEKHERVKDKERHRDKEK 146 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRWWKRRK 723 E D E E K + +R+ Sbjct: 147 ERDARKEEKDKERRRHHRAESERRRQEESGEGGFKKQERDKRE 189 >gi|268555196|ref|XP_002635586.1| Hypothetical protein CBG20574 [Caenorhabditis briggsae] gi|187023296|emb|CAP37559.1| hypothetical protein CBG_20574 [Caenorhabditis briggsae AF16] Length = 169 Score = 41.9 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 11/134 (8%), Positives = 25/134 (18%), Gaps = 1/134 (0%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 S N E P S + + + Sbjct: 4 SRTRTRKPGNPEARKPGSPEARKPGNPEARKPGSPEARKPGSPEARK-PGSPEARKPGSP 62 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++ R+P + + + + Sbjct: 63 EARKPGNPEARKPGSPEAQKPGSPEARKPGRPEARNPGSPETRKPGSPEARKPGSPEARK 122 Query: 688 ENYDVSIPPVSTPE 701 ++PP+ +PE Sbjct: 123 PGSPEALPPLESPE 136 >gi|85091486|ref|XP_958925.1| hypothetical protein NCU09346 [Neurospora crassa OR74A] gi|28920317|gb|EAA29689.1| hypothetical protein NCU09346 [Neurospora crassa OR74A] Length = 2295 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 15/211 (7%), Positives = 52/211 (24%), Gaps = 15/211 (7%) Query: 497 SSVALSILRSVEEYLLQYTAHNIIVHTHSDV---VLYLLNQKRATIVEYEARFGVSINVV 553 A R ++E + A I + + + + E EA+ Sbjct: 1623 EWYAKEEQRKLKEAAQKEEARRIALEAKQKAELEAKQMAELEAIRLAEMEAKRKAE---- 1678 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + E+ + ++ ++ + + Sbjct: 1679 -------EERKAEQNRKAAEAKRKAEEAKKAAEEVKKKAEEARRQAEQEARHKKEEAATR 1731 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-DAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ++ E+ + ++R+ R+ + ++V + + + + Sbjct: 1732 KAEEKKRQAEAKRLAEEKRKAEAARQAEEQQQAELKRQAEVERLAEKKRKADEAARQAEA 1791 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 + L + + + + E Sbjct: 1792 ELHAELQRQADEAERRAKEAAQKARAALQAE 1822 >gi|299745769|ref|XP_001841446.2| hypothetical protein CC1G_13146 [Coprinopsis cinerea okayama7#130] gi|298406743|gb|EAU80366.2| hypothetical protein CC1G_13146 [Coprinopsis cinerea okayama7#130] Length = 843 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 2/158 (1%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 IE+ +P Q ++ +E ++ + + + Sbjct: 688 IEQETPPQRPPEDRYQGRRTRSRSQAQDALEEGASEDDSDQPSSFQGIRTRRQRREDAHP 747 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R R R+ A + V + S T + Sbjct: 748 KSTDERSRTTRNRQTAANPENAKPVGKRKDYPVPL--TSPSKRPRVEASTQSKSSSHKKT 805 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T + P + ++N + + K R RR Sbjct: 806 SQTSKREAPPPRTPKRQKPAANGRKEAVTPKKRVAGRR 843 >gi|8163678|gb|AAF73797.1|AF154028_1 surface protein PspC [Streptococcus pneumoniae] Length = 730 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++ + + V + L N K + E Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + + E+ P + D E LP P + Sbjct: 243 KLKESVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + K ++ RR T+ + + S V + ++ E + Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + N A E+ + + + KK +RK Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404 >gi|195436658|ref|XP_002066274.1| GK18181 [Drosophila willistoni] gi|194162359|gb|EDW77260.1| GK18181 [Drosophila willistoni] Length = 5689 Score = 41.9 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 6/139 (4%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 G D S +A + +S+ D + + + RKR R Sbjct: 1517 EGESPDYDDIPVSKIPRSSNEDDKDAEVGDETVDSVPDSAGDAGASTPSRRDRKRSNTRS 1576 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 RR ++ + + S + + I + E+ T Sbjct: 1577 RRNATSEEGGSSRRNRGS----LSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPP-- 1630 Query: 697 VSTPEMESSNSSSDPIVKK 715 S + SS + KK Sbjct: 1631 DSELDSNKRRSSRNTQRKK 1649 >gi|322705531|gb|EFY97116.1| transcriptional regulator Cti6 [Metarhizium anisopliae ARSEF 23] Length = 734 Score = 41.9 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 13/151 (8%), Positives = 37/151 (24%), Gaps = 3/151 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G N + + + + + + + + Sbjct: 439 RGRSDSEDNNNNTSIKRQRTSSRSPSPLAEKQEPVDEVVSGDETETRNGAKKSKNNQQPR 498 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++ R R+R+ A + D S +M + + E+ + Sbjct: 499 EKPEKEDRERQRQEAANKRKGRAER---RRAEDSDLSEEMPLAAAKAVPQKPAESPSKEE 555 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + + +S+S R Sbjct: 556 SPSVAQAPGTPPPTHPTASSSHKRGARANKR 586 >gi|301755542|ref|XP_002913621.1| PREDICTED: probable RNA-binding protein 20-like [Ailuropoda melanoleuca] Length = 1202 Score = 41.9 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 2/137 (1%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + + ++ +S+ P + + + + + P+S + Sbjct: 736 EPKGKSDKYIKQQQDAPGRSRRKEEARMRESRHPHPEDSGKEDGLEPKVTSAPESTKSKQ 795 Query: 615 IQDN--IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + N + V RR RR A + SS ++ E + Sbjct: 796 SEKNRTKRPDRDQEVADNRRERRMAGNEAGREGQERMEESTSSPARQEKETVSSDAEDAR 855 Query: 673 ITNHNLLENGAHGFTEN 689 E+G+ E+ Sbjct: 856 TKKEQEWESGSEAEGES 872 >gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius ATCC 35098] gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius ATCC 35098] Length = 712 Score = 41.9 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 11/103 (10%) Query: 40 GNIYLAKVTRVEPSLQ-AAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98 G++Y KV R+ + AFV+ + G L QI + + E + Sbjct: 620 GDVYTGKVVRI---MNFGAFVEIAIGKEGLLHIS-------QIDHHRVEKVEDELKVGDE 669 Query: 99 DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISA 141 V + G + + LE+ + Sbjct: 670 VKVKVTEIDRQGRINLSRKALLEKPEAWPVDESPYRKNDKKEK 712 >gi|47212262|emb|CAF96458.1| unnamed protein product [Tetraodon nigroviridis] Length = 968 Score = 41.9 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 12/144 (8%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 P+ +D+ D ++ S ++ V +RR+ + R Sbjct: 371 PDARRQTEPAGPAVPPEGEEDQPAGQKDVEAEDADGTEDERSPPASEVTAQRRKEKDRNE 430 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 T + + D ++ Sbjct: 431 EKTKPGRSKKREKREKGKREAGPGSSSTASGHDRKRRKEGKSRKEK------------DR 478 Query: 700 PEMESSNSSSDPIVKKTRWWKRRK 723 + N S K+R K+R+ Sbjct: 479 RILGDLNLQSKERTDKSRHKKKRE 502 >gi|126328921|ref|XP_001366092.1| PREDICTED: similar to SPEN homolog, transcriptional regulator isoform 1 [Monodelphis domestica] Length = 3564 Score = 41.9 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 4/178 (2%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E EA V +E + V SD ++ + + Sbjct: 2278 AESEAEMATEPLVQAEMEPETDQ-AVSGILETDNAVEPSVPPASDPAPSAHPGDPKDPEG 2336 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQN 658 + + P E +Q+ VS + + R RR+R D +A + + Sbjct: 2337 NTTVSPSSAQEPEVVLQETEVSRKDRVRQKSTRSRRKRSTSKKGDAVEANALESEQAPNK 2396 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTE--NYDVSIPPVSTPEMESSNSSSDPIVK 714 S P +N +E D S P + + DP K Sbjct: 2397 CPVTSELKLKPPETPKEDKQNKNSHPVSSEPNPTDSSKNPANETITIELVAEEDPPAK 2454 >gi|83616161|gb|ABC25605.1| anonymous antigen-2 [Babesia bovis] Length = 718 Score = 41.9 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 7/142 (4%), Positives = 36/142 (25%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + ++ +A ++ + + ++ + +E+ +++ R+R Sbjct: 188 EFKAEQEALEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKR 247 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + + + + + + E + Sbjct: 248 QEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQ 307 Query: 700 PEMESSNSSSDPIVKKTRWWKR 721 E E+ + + + + Sbjct: 308 EEAEAERKRQEEAEAERKRQEE 329 Score = 41.5 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 7/150 (4%), Positives = 34/150 (22%), Gaps = 1/150 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + Q ++ + + ++ + +E+ +++ Sbjct: 190 KAEQEALEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQE 249 Query: 633 RR-RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R+R+ + + + + + + E + Sbjct: 250 AEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEE 309 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E E+ + + + + Sbjct: 310 AEAERKRQEEAEAERKRQEEAEAERKRQEE 339 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 33/150 (22%), Gaps = 1/150 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + P +K S+ + E + + ++ + +E+ Sbjct: 166 RYRPECDGEYIQYKNCSEKNWVEFKAEQEALEAERKRQEAEAERKRQEAEAERKRQEAEA 225 Query: 627 VIRKRRRR-RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +++ R+R+ A Q + E Sbjct: 226 ERKRQEAEAERKRQEAEAERKRQEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERK 285 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E + E E +K Sbjct: 286 RQEEAEAERKRQEEAEAERKRQEEAEAERK 315 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 56/231 (24%), Gaps = 4/231 (1%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 R + A + + EE + +KR E E + Sbjct: 264 RKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAE 323 Query: 554 IGIELADKLFYIEKGSPVQ-ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + E+ + + + + E Q+EA + E Sbjct: 324 ---RKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEA 380 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 E + E+ ++ R+R+ + + + ++ E Sbjct: 381 EAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEEEARQAAERKR 440 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E ++ + + + + K+ +R+ Sbjct: 441 QEEERQKEERLAKEALQKRLAEEAAQKRLEQMRRQAEEKLRKEKEAEMKRQ 491 >gi|123471476|ref|XP_001318937.1| hypothetical protein [Trichomonas vaginalis G3] gi|121901709|gb|EAY06714.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3] Length = 1193 Score = 41.9 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 52/173 (30%), Gaps = 7/173 (4%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++ + F +++ + + ++ V + +P + Sbjct: 752 VLISPSKKKTNEFSLDQIQSSPKKKKKQEPDNQEQEQKKRERKKPKVEKQIDEIPKKTKK 811 Query: 611 SL--EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 E+ D+ VI++ R+++ RR + +++ I+N S Sbjct: 812 QKKLEEEYDDEADINEQEVIQQPRKKKNRRIKPETEEKLQINTEIYKIRNKTAPSSPTKQ 871 Query: 669 EPSDITNHNLLE----NGAHGFTENYDVSIPPVSTPEMESSNSS-SDPIVKKT 716 P + N N P S + SS ++P K+ Sbjct: 872 RPQQLVIENTNNMQYFEVKEENPRNEYKLRSPTSQRIKKQRRSSYNEPNNHKS 924 >gi|118086455|ref|XP_001232309.1| PREDICTED: serine/threonine-protein kinase PRP4K [Gallus gallus] Length = 1005 Score = 41.9 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 37/157 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ ++ + + ++ S + KS + + + +S Sbjct: 233 DQTRKSRSPMLKRRSQEKNRKSKSPPDDRNKADDKSKSRDRRKSPVVNESKSRDRGRKSK 292 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R + + RR + D +D + + Sbjct: 293 SPAELRSKSKDRRSRSKDRKSRRSETDKDKKPIKSPSKDASSGKENRSPRRPGRSPKGRS 352 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + +P S +TR RR Sbjct: 353 LSPKPREKSRRSRSPLFNDRRSKQSKSPSRTRSPARR 389 >gi|114645175|ref|XP_001165059.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 5 [Pan troglodytes] Length = 1380 Score = 41.9 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 729 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 788 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 789 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 842 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 843 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 900 Query: 720 KRRK 723 R + Sbjct: 901 SRER 904 >gi|85092606|ref|XP_959478.1| hypothetical protein NCU02315 [Neurospora crassa OR74A] gi|28920910|gb|EAA30242.1| predicted protein [Neurospora crassa OR74A] Length = 1390 Score = 41.9 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 40/159 (25%), Gaps = 3/159 (1%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A E+ ++ + ++ + + + + Sbjct: 496 AQPDVEPERVEQPGEATPAPTSTAKTPRSKGSKRKVKVPYFEREEVEARDNAETSAEPSV 555 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + ++ ++R+ R A D V V S+ N + Sbjct: 556 KEVSATQKDQKREKKRKAR---AEDEQSTSNVEPAPKKAKVSTKKKPAKKADSEEDNSEV 612 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 E G + N + P +++ S T+ Sbjct: 613 EEAGDNSNKANLQGRVTPAEHARIKAVIDSFRDAQGLTK 651 >gi|327307298|ref|XP_003238340.1| hypothetical protein TERG_00330 [Trichophyton rubrum CBS 118892] gi|326458596|gb|EGD84049.1| hypothetical protein TERG_00330 [Trichophyton rubrum CBS 118892] Length = 995 Score = 41.9 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 37/176 (21%), Gaps = 6/176 (3%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP--IPKSE 610 E+ ++ + E Q E Sbjct: 544 EREALFETPEQEQERVREADKMLEKSGLEEPPAHLEESRPEEEGSKQRFPSKDVWEEAPE 603 Query: 611 SLEDIQDNIVSEESTGVIRKRR----RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 S + +S + + R D D+S + ++ Sbjct: 604 SQQLTAAVEAPADSEKSEKPEKPSLPSLPPRPSRQPDRSSTEEQRDISPTKTQATSPTEL 663 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 PS + + P T E+ ++++ P K R Sbjct: 664 KKRPSVPDRPKPQVPQRPTRKKGQESGEPLSKTISGENPDNAAPPAPKSKPALPPR 719 >gi|242800420|ref|XP_002483584.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] gi|218716929|gb|EED16350.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] Length = 678 Score = 41.9 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 12/159 (7%), Positives = 37/159 (23%), Gaps = 8/159 (5%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + + E V +DEA + ++ ++ Sbjct: 253 RARSRRGAENQPAAEAEPEIDREAVQEDEAPEASTAKSGRKRKNQPENGQDKGKEPTQQA 312 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY--------MEPSDITNHNLLENGAH 684 R RR+R D + ++ Q + ++ Sbjct: 313 PRGRRKRTRPPIEDEAEDREDTAPQPRKERKGKNREVEAVAEMPGEETQERAEEIQKSKE 372 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P + + + + + ++ Sbjct: 373 NGESSRRRGRPSLDKEQDSQPEAETTTTTRPEPDQAPKR 411 >gi|118400498|ref|XP_001032571.1| hypothetical protein TTHERM_00584640 [Tetrahymena thermophila] gi|89286914|gb|EAR84908.1| hypothetical protein TTHERM_00584640 [Tetrahymena thermophila SB210] Length = 686 Score = 41.9 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 5/172 (2%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 L+ +K Q + + S + D + E+ + + + Sbjct: 360 SLSQPQSATQKKKNQQKRILRKKRNNSKKVQDNDDSDFIKSDDSESQSEEDQEDQSSEQS 419 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 +N E S KRR RR++ D + + S +N DDS + Sbjct: 420 ENSDQENSLPQKTKRRILRRKKSVVNDDSEQEDQEEGSFNKNGQDDSGEKQKNKRGRRLL 479 Query: 677 NLLENGAHGFTENYDVSIPPVS-----TPEMESSNSSSDPIVKKTRWWKRRK 723 + G +N S E + +SS + +K R + K Sbjct: 480 QKNKLTKVGKNKNTVESDEEQEFNNPIKKEKNNEDSSENDGIKIARKQPKAK 531 >gi|302900054|ref|XP_003048185.1| hypothetical protein NECHADRAFT_93333 [Nectria haematococca mpVI 77-13-4] gi|256729117|gb|EEU42472.1| hypothetical protein NECHADRAFT_93333 [Nectria haematococca mpVI 77-13-4] Length = 571 Score = 41.9 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 1/146 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 V + P E Q P K+ + E + +K+R Sbjct: 360 EPVVDEVPEPTRVDQPKLPAVEETRAQSLRGRPKKKAAAEEAQPVDQPEATPVTKPKKKR 419 Query: 633 RRRRRR-RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R+ +PAT+ +A + S+ N + + + + + +E + + Sbjct: 420 GRPRKAGQPATETKEASPQVEQLSVGNAVPSAKVTKRSKAKLETQHQVEEVKIDDEQEEE 479 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 S + S ++ KT Sbjct: 480 SKEAMDSRDDKAVLQESKPNVINKTG 505 >gi|260841489|ref|XP_002613946.1| hypothetical protein BRAFLDRAFT_67491 [Branchiostoma floridae] gi|229299336|gb|EEN69955.1| hypothetical protein BRAFLDRAFT_67491 [Branchiostoma floridae] Length = 4101 Score = 41.9 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 28/204 (13%) Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 I + R G + V+ I K P + G S E Sbjct: 2238 IEKLRIRKGQRVEVIEEDPEDMPE-RIVKVEPPEKPERVGKSKRGRS-------RGEPKS 2289 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + + L E + + + E + +R R R D D S ++ Sbjct: 2290 ETKVLEATEAEEDYKPLAIKVEEPEISSYESPTKRTRLDRYRQNDISDVETKPKTSELET 2349 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK---- 714 + + + D+T + LE + ++ +P VK Sbjct: 2350 RMKHTTEQDTPTKDLTKQDDLETAKGRPSVELKGWKSKAEKRDVVKEEPKLEPEVKPPSC 2409 Query: 715 ----------------KTRWWKRR 722 +T +RR Sbjct: 2410 EQKSPIAATIVSAPEVRTSTRERR 2433 >gi|158295214|ref|XP_316086.4| AGAP006038-PA [Anopheles gambiae str. PEST] gi|157015928|gb|EAA11204.4| AGAP006038-PA [Anopheles gambiae str. PEST] Length = 1366 Score = 41.9 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 6/160 (3%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + +P + S ++ + + + + + S + Sbjct: 703 DYSPARRNPERYSDILQRSSKSRTETNGKEDDRKSTKTTKPVSSRSGSPREPRRSSSPRG 762 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E++ K+ + RR + D S+ + S PS Sbjct: 763 EKADSKTAKKDSAPKARRASVSPSPPPARRDRSASRTKSRRS------PSPKKRDTSRHE 816 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + PP PE S+ S S K+R Sbjct: 817 ASPVAKKREKPVAPPAEKPEKRSTTSPSSTRRVKSRSRSP 856 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 8/133 (6%), Positives = 27/133 (20%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + ++ + +++ + P + + Sbjct: 792 RDRSASRTKSRRSPSPKKRDTSRHEASPVAKKREKPVAPPAEKPEKRSTTSPSSTRRVKS 851 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R +RRR+ S ++ P + A Sbjct: 852 RSRSPPEVKRRRQEQASPAARSTTKPTSERESTETAKRSETRTPEKSESRKSRSKKASSS 911 Query: 687 TENYDVSIPPVST 699 + + + Sbjct: 912 SGGAAAASSSSTN 924 >gi|321248711|ref|XP_003191213.1| nucleic acid binding protein [Cryptococcus gattii WM276] gi|317457680|gb|ADV19426.1| Nucleic acid binding protein, putative [Cryptococcus gattii WM276] Length = 2060 Score = 41.9 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 29/127 (22%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + V++ + K + + E + + + ST Sbjct: 1687 REGSVESRASERSKRREQDRDRYRRDRDHRDREKERDRRDRSTAEDDKKRQEDSVPASTQ 1746 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R RR RR + S ++ + D D + Sbjct: 1747 SDAGRESRRSRRDGERERDKEEKKSRERDREDRKERGRDRSYRGEDSDRKRKRDEEPSSR 1806 Query: 687 TENYDVS 693 + S Sbjct: 1807 KLEPEAS 1813 >gi|158294343|ref|XP_315541.4| AGAP005541-PA [Anopheles gambiae str. PEST] gi|157015520|gb|EAA11214.5| AGAP005541-PA [Anopheles gambiae str. PEST] Length = 2535 Score = 41.9 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 37/148 (25%), Gaps = 4/148 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + Q D+ DE L ++E + S E+ Sbjct: 511 ATPEKSPAATKPAKEKQQQKQPDRVDFSSDDDEPLSRTTRTEKRASDRAVRTSPEAGKTT 570 Query: 629 RKRRRRRRRRRPATDHHDAG----VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 R R R+ D S+ + D E ++ E Sbjct: 571 RSGRSRKSEPAATLDKDPDEMPDKKTRRSESVVSRRSDISSRKSEMREVLPKKAEEATKP 630 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPI 712 + PV+ + + S+ + Sbjct: 631 QPAQRGRKRKEPVAQTQQPAVKSTKEEE 658 >gi|254417164|ref|ZP_05030909.1| hypothetical protein MC7420_6589 [Microcoleus chthonoplastes PCC 7420] gi|196175970|gb|EDX70989.1| hypothetical protein MC7420_6589 [Microcoleus chthonoplastes PCC 7420] Length = 633 Score = 41.9 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 36/155 (23%), Gaps = 1/155 (0%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 E + + T + ++ P P+ S+ Sbjct: 451 QADTEPVTPDQETPEEASDIVTEETKSQPKPEASTPLDKTQTSPQEPQAKTEPVTPSQKT 510 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + +IV+EE+ + T ++ + + Sbjct: 511 PEEASDIVTEETKSQPEPEASTPLD-KTQTSPEKPQAETEPVTPAPKTPPQPSEVIPEDT 569 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 +N + TE P+ ES + Sbjct: 570 ESNPETTKTVPEEATEKSVTPDKPLPPESPESEEN 604 >gi|195469976|ref|XP_002099911.1| GE16755 [Drosophila yakuba] gi|194187435|gb|EDX01019.1| GE16755 [Drosophila yakuba] Length = 3168 Score = 41.9 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 43/173 (24%), Gaps = 1/173 (0%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G I + + +G V ++ + S + K + + + Sbjct: 1302 GKKIPSKVESNFVTEKVIDCRGKTVVEKISQRPRTPSPTTPKKNTKPSQNIPERVPETES 1361 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + E S + + +RR R + + + + S Sbjct: 1362 EPEKDSEPETKKKTSVSVSKLETERRNSRTTKTKQPLQPKEPQSKVPTAKSPRKDSLSGR 1421 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + T + D + P + SS ++TR Sbjct: 1422 KRDSLVEETRTTTTTTTTRQGRKPSDTNGSPTIKDRLRSSPRKQKTSPQQTRT 1474 >gi|296236333|ref|XP_002763278.1| PREDICTED: THO complex subunit 2-like [Callithrix jacchus] Length = 1365 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 40/170 (23%), Gaps = 7/170 (4%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--CVWQDEALLPIPKSE 610 V ++ + ++ + DS + + + L + E Sbjct: 1167 VPRSDIPEPEREQKRRKIDTHPSPSHSSTVKDSLIELKESSAKLYVNHTPAPLSKSKERE 1226 Query: 611 SLEDIQDNIVS---EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + D E + R+ R+R ++ + S Sbjct: 1227 MDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDLIKRRKEENGTMGVSKHKS 1286 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 P + E + + E + S K++R Sbjct: 1287 ESPCESPY--PNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESR 1334 >gi|297735565|emb|CBI18059.3| unnamed protein product [Vitis vinifera] Length = 703 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + K + + + + + ++ L K E+ +D E+ + Sbjct: 108 RRKAEEKRQARLEKELLEEEERKQREEVARLVEERRRLRDEKMEAEKDRGKPPFREKDSK 167 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++R+ RR+ D G S + + + ++ + ++ H Sbjct: 168 KEAEKKRQERRK-----ERDKGSSKSNSDAEEMERKAGKESERKRELDRKSEIDRREHQK 222 Query: 687 TENYDV 692 T Sbjct: 223 TGTEIS 228 >gi|238485520|ref|XP_002373998.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus flavus NRRL3357] gi|220698877|gb|EED55216.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus flavus NRRL3357] Length = 751 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 32/144 (22%), Gaps = 7/144 (4%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST---- 625 + S+A + K+ + D+ + +E + E Sbjct: 584 TDKKPEGEAASEPKSSEARATPKSDDEDVIDKTPITDDDGNVMETEGGSFGPFEEDDDAD 643 Query: 626 --GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R RR+ P + S ++ + P Sbjct: 644 RIARAERNRLRRKGINPKA-VLNKPSKKSKSEPESTEESKDSESSAPEPKKKTATTTPEK 702 Query: 684 HGFTENYDVSIPPVSTPEMESSNS 707 + ST + S Sbjct: 703 AKKAQKNTKPKSQESTTPEKKSEG 726 >gi|328860513|gb|EGG09619.1| hypothetical protein MELLADRAFT_95838 [Melampsora larici-populina 98AG31] Length = 1765 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 10/169 (5%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E L + + S + + D+ + S N +S++S Sbjct: 71 VEGSKKKVKLKESQLEKKMVSAFKKASETVTIEDSDDDHTESGNARSESKSDTNFISDDS 130 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV----------IDDSFDMYMEPSDIT 674 +++RR RR T D + D + S+ Sbjct: 131 DEGGKRKRRSGNRRETRTSGRDTRDSDSGNRRSTRDTRHRGSLKLKDPIMSEELRESESD 190 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 H+ ++ + D E E + + RK Sbjct: 191 EHDSVKVHSTRAQRKSDRDQKKRDRDESEDLTERGSSQPRAHKAKSPRK 239 >gi|195131205|ref|XP_002010041.1| GI15698 [Drosophila mojavensis] gi|193908491|gb|EDW07358.1| GI15698 [Drosophila mojavensis] Length = 1991 Score = 41.9 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 42/160 (26%), Gaps = 2/160 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ S +++ V + P ++ P + + ++++ Sbjct: 1415 ERESIAESIKPESQPVSLEPSRPHSVAENAKDDHEKPDSPKDEQSAEPSRRESVAESSKP 1474 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ + + + + V D + + S + S + Sbjct: 1475 EGLKDEKSSPLSKEASRPGSVSESVKDEKAESVKNEKSAEPSRRESVAESTKPDSLKDDK 1534 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVK--KTRWWKRRK 723 P S E VK K+ RR+ Sbjct: 1535 SLPASKEPSRPESVAESVKDEHDKPESVKDDKSGEPSRRE 1574 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 36/162 (22%), Gaps = 4/162 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E P + + P D+ ++++ Sbjct: 1523 ESTKPDSLKDDKSLPASKEPSRPESVAESVKDEHDKPESVKDDKSGEPSRRESVAESTKP 1582 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ + + P+ H V D + D + + + Sbjct: 1583 ESLKDDKSVPASKEPSRPHSVTESVKDEHEKPESVRDDKSGEPSRRESVAESTKPDSLKD 1642 Query: 686 FTENYDVSIP--PVSTPEMESSNSSSDPIVK--KTRWWKRRK 723 P P S E VK K+ RR+ Sbjct: 1643 DKSLPASKEPSRPESVAESVKDEHEKQESVKDEKSGEPSRRE 1684 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 54/216 (25%), Gaps = 6/216 (2%) Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSD---VVLYLLNQKRATIVEYEARFGVSINVVIG 555 ++ +E + + L + K + + +R ++ V Sbjct: 1660 ESVKDEHEKQESVKDEKSGEPSRRESVAESTKPESLKDNKSLPVSKEPSRPASAVESVKD 1719 Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + E+ + D + + E Sbjct: 1720 EHEKPESVKDERSGEPSRRESVAESTKPDGLKDEKSHPASKEPSRPESVAESVKDDHEKP 1779 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + + R+ + D + + S +V + D +M+P + Sbjct: 1780 ESVKDEKSEEPSRRESVAETTKAEILKDDKSLPISKEPSRSSSVAESVKDEHMKPESARD 1839 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 E E SI S + ES + S +P Sbjct: 1840 EKSGEPSKR---EPVAESIKLDSLKDDESLSVSKEP 1872 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 12/159 (7%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + ++ D+ E V +++ P + E + + + ++ + Sbjct: 1479 DEKSSPLSKEASRPGSVSESVKDEKAESVKNEKSAEPSRRESVAESTKPDSLKDDKSLPA 1538 Query: 629 RKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 K R + +H V D S + +S +P + + + Sbjct: 1539 SKEPSRPESVAESVKDEHDKPESVKDDKSGEPSRRESVAESTKPESLKDDKSVPASKE-- 1596 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK--KTRWWKRRK 723 P S E V+ K+ RR+ Sbjct: 1597 ------PSRPHSVTESVKDEHEKPESVRDDKSGEPSRRE 1629 >gi|115760349|ref|XP_798355.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115949733|ref|XP_001184698.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 2169 Score = 41.9 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 1/167 (0%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 ++ + + + + + + D IE V + + S E + Sbjct: 940 QIETQQYGATDEQEAEVEMEIEAEEEEIEEGKKEDARIEEVEEIPSKGQQQIFVSQERRR 999 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 D ES + R+ T+ + ++S + + + + Sbjct: 1000 DPYEFTESQSNKTPTPMKTWARKEDTEPKEKLPSKNLSEVSSTKPTTEQPSTSAAVTLKT 1059 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 G+ T E E N + P + +TR R+K Sbjct: 1060 KRTPKGSRQNRGAKRKRPQDPETTEEEGDNVEN-PALNRTRTSPRKK 1105 >gi|325120362|emb|CBZ55916.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 455 Score = 41.9 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 3/126 (2%) Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVS 651 E + +S D + + G K++RRR+ + A S Sbjct: 303 EGREKKSGEKVRDARESRVEPDSKKSEGDGSEKGDAEPKKKRRRQEGGEERESEAAPRES 362 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP--VSTPEMESSNSSS 709 S E E T + + PE + Sbjct: 363 ATESKIARSLPEQADSAEDRRTEKKKREEKPDREATADPSRGTEKGLRAAPEKTEERHAR 422 Query: 710 DPIVKK 715 K Sbjct: 423 TGSKMK 428 >gi|95930674|ref|ZP_01313408.1| PSP1 [Desulfuromonas acetoxidans DSM 684] gi|95133326|gb|EAT14991.1| PSP1 [Desulfuromonas acetoxidans DSM 684] Length = 426 Score = 41.9 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 30/139 (21%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + ++ + K + + ++ + +R R Sbjct: 272 PVASLSTNKTGAKEEPKKSGGSSPAPEKRQAKEGERKTGNKGKGGKPASRDGKPQRPARG 331 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + + QN + + + D S Sbjct: 332 KSAEGRPSKNKRGGKPGQEKQNRPKKTSGPQEQQGQENSQRPNRKPRPDKGPAKDKSQAT 391 Query: 697 VSTPEMESSNSSSDPIVKK 715 +T E N +P KK Sbjct: 392 PATGENNDKNQEKNPQDKK 410 >gi|327268845|ref|XP_003219206.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Anolis carolinensis] Length = 1451 Score = 41.9 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 53/232 (22%), Gaps = 21/232 (9%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEA-RFGVSINVVIGIELADK 561 R L + + + N KR I E E R I +L Sbjct: 1173 RLDSTELDHSENEDYTMASPLPAK---KNDKRDDSDISELEKPRSRKKIITDPEDKLGMD 1229 Query: 562 LF----YIEKGSPVQALVNTGHKVGSDSQA--PSYDKNIECVWQDEALLPIPKSE--SLE 613 K Q + + P + E V + E P + Sbjct: 1230 DLSKLGQESKLRSGQRGRKRAAVISESEEPQWPEEKRLKEDVLESEDEQNSPPKKGRRGR 1289 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRR------PATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + + + K +R R++ + + ++I+ + Sbjct: 1290 PPKAAAGATQKEESAAKTPKRGRKKATPVKPVEEEEEEGEEEGEEEERQMDIIEQKSKIR 1349 Query: 668 MEPSDITNHNLLENGAHGFTE-NYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E+ E N P + +T+ Sbjct: 1350 QYKTPRKAQQRSESSEISAAESNQSTPQKKRGRPPKTPPSQQKKGRGGRTKQ 1401 >gi|157817873|ref|NP_001101708.1| ankyrin repeat domain-containing protein 12 [Rattus norvegicus] gi|149037368|gb|EDL91799.1| ankyrin repeat domain 12 (predicted), isoform CRA_b [Rattus norvegicus] Length = 2047 Score = 41.9 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 58/245 (23%), Gaps = 17/245 (6%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNII-------------VHTHSDVVLYLLNQKRATIV 540 R + E+Y + A + LN + ++ Sbjct: 654 RDKEKHRKEAEGEKEKYKSRDNAKEPQRSIEFDREFWKENFFKSDETEDLFLNMEHESLT 713 Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS-DSQAPSYDKNIECVWQ 599 E + V V DK E+ + S + K + Sbjct: 714 --EKKSKVEKTVKDDRLAKDKHASKERNCKEEREKTKRENEKSLKEERLKDPKEEKDGVS 771 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 E + + + V +++ R + R +D ++ + Sbjct: 772 AEKEAEGSSMAVSANQETSGPHSSEREVDIEKQERHSKEREKSDRRFQTKEKELDRTERK 831 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRW 718 + + L + + D P + + + + K + R Sbjct: 832 VSEKEKKLKHEHKSEREKLDFSDCTDRVKEKDRLYSPQTERCHKEGEKMRNTVRKAEDRE 891 Query: 719 WKRRK 723 R K Sbjct: 892 RAREK 896 >gi|268534632|ref|XP_002632447.1| Hypothetical protein CBG13668 [Caenorhabditis briggsae] gi|187028323|emb|CAP32433.1| hypothetical protein CBG_13668 [Caenorhabditis briggsae AF16] Length = 688 Score = 41.9 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 20/114 (17%) Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 + + ES +RR R R P D +A + Sbjct: 242 EAWPDEANRPKTKRQLELESESAPPPARQEPRREHQKERRRSRYRDTSPREDSDEAQAGT 301 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 E + + H +M Sbjct: 302 PPPERAKKHKPRRRTAPESNSRRREASESDSRHRTAPEAQAGPEYNPRRQMAPE 355 >gi|327279406|ref|XP_003224447.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Anolis carolinensis] Length = 1005 Score = 41.9 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 13/146 (8%), Positives = 33/146 (22%), Gaps = 1/146 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q S+A K+ E + + + +S Sbjct: 247 RRSQEKNRKSRSPEDRSKAEEKIKSRERKKSPVVVESKSRDRGKKSKSPVEQRSKSKDRR 306 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ RR + + S S + Sbjct: 307 SRSKERKSRRSETEREKKPIKSPSKDASSGKENRSPSRRPGRSPKGRSLTPKPRDKLR-R 365 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + + +S + + P + Sbjct: 366 SRSPLLNDRRSKQSKSPSRNRSPSRR 391 >gi|189235987|ref|XP_971849.2| PREDICTED: similar to BMKETTIN [Tribolium castaneum] Length = 20466 Score = 41.9 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 26/235 (11%), Positives = 58/235 (24%), Gaps = 5/235 (2%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 R + ++L+ E + T + + T++ E R + I Sbjct: 4969 RRVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQ 5028 Query: 554 IGIE----LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + +E+ V+ + + + Sbjct: 5029 AETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQ 5088 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + +ED + E +K R RRP D V + + + + Sbjct: 5089 KHVEDTTLLSLEEREKVTEKKEAETRGWRRPRKDDTSVERQKHVEDTTLLSLEEREKITQ 5148 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723 + + + + E + +TR W + RK Sbjct: 5149 KKEEETRGWRRPRKDDTSVERKHTTEDTTLLSREEQEKIKETKDAETRGWRRPRK 5203 Score = 40.7 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 3/169 (1%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + + + S + L + P ++ + + + + S + Sbjct: 6079 DELVHTEDSTMIAVSEKERLEEQPQPETRGWRRPKKEEKRVEEEKPKDKVHVEDSIMIAV 6138 Query: 615 IQDNIVSEESTGVIR--KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + V E+ R +R ++ ++ D V D + I + D +P Sbjct: 6139 SEKEKVEEQPQPETRGWRRPKKEQKPIEDEKPKDKVHVEDSTMIAVSEKEKIDEKPQPET 6198 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S E P +TR W+R Sbjct: 6199 KGWRRPRKPTEEEKPQEPVRVEDSTSIAVSEDKKVDEQPQP-ETRGWRR 6246 Score = 37.6 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 4/212 (1%) Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ 572 Q I+ DV L + + + E +++ ++ E S + Sbjct: 4913 QRQTKEIVKEQIEDVQLKPSKIQSKEVEKLELE---KVDLKHRTKVVTGQKTEEISSLDR 4969 Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + +K + +D +ED V + I K+ Sbjct: 4970 RVDTEDTTLLKVDERTRTEKTEKLETKDWRGPRKDTRRDVEDTTLLSVEDREKIEIEKQA 5029 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 R RRP + V + D + E + + Sbjct: 5030 ETRGWRRPRKEDTSLERKKHVEDSTLLSVDQREKVTETQETDTRGWRRPRKEDTSVERQK 5089 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTR-WWKRRK 723 + + +E ++ +TR W + RK Sbjct: 5090 HVEDTTLLSLEEREKVTEKKEAETRGWRRPRK 5121 >gi|195386402|ref|XP_002051893.1| GJ17250 [Drosophila virilis] gi|194148350|gb|EDW64048.1| GJ17250 [Drosophila virilis] Length = 5552 Score = 41.9 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 3/135 (2%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 G D S EA +S+ D + S S ++ R R Sbjct: 1542 DGESPDYDDIPVSKIPRGANDDDKEAEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSR 1601 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R + + A S + + + P + ++ Sbjct: 1602 RNATSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPS---PPPDSEL 1658 Query: 697 VSTPEMESSNSSSDP 711 S S N+ Sbjct: 1659 DSNKRRSSRNTQRKK 1673 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 8/130 (6%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I +G+ DS S + + +S Sbjct: 1544 ESPDYDDIPVSKIPRGANDDDKEAEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRN 1603 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 ++ + + G + + ++RR R + D + + DS + Sbjct: 1604 ATSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPSPPPDSELDSNKR 1663 Query: 671 SDITNHNLLE 680 N + Sbjct: 1664 RSSRNTQRKK 1673 >gi|170782512|ref|YP_001710845.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 761 Score = 41.9 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 16/170 (9%), Positives = 39/170 (22%), Gaps = 13/170 (7%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + E+G + + D ++ N D + + E + Sbjct: 122 ERPSYGAERGQRSERPSYGNARPARDERSERPSYNDRAPRNDRPSYGNDRPQRSERPSCD 181 Query: 619 IVSEESTGVIRKRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 S R R R +R ++ + +N + P+ Sbjct: 182 DRPARSERPSHNDRAERPSYGDRAQRSERPAYNDRAERPSYNDRNTRTERPAYSDRPARA 241 Query: 674 TNHNLLENGAHG--------FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ++ E + E + + P + Sbjct: 242 ERPSYNDSRPARTERPSYGDRAERTERPSYNDRPARTERPSYNDRPARTE 291 >gi|332248972|ref|XP_003273638.1| PREDICTED: PHD finger protein 20 [Nomascus leucogenys] Length = 1012 Score = 41.9 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVDNARPKEADHKTLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|311256485|ref|XP_003126672.1| PREDICTED: SRSF2-interacting protein-like [Sus scrofa] Length = 1455 Score = 41.9 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 60/232 (25%), Gaps = 12/232 (5%) Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD 560 L E L++++ + TH + + ++ ++ E S + Sbjct: 670 DKSLEEKTESLVEHSKTTELPKTHIEQIEKHFSEDNNEMIPMECESFCS---DQNESEIE 726 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI- 619 + + V + S P +K E+ + + + + Sbjct: 727 PSVNADAKQLNENSVEHSFQKNMSSSDPVKEKVESVSQPSESPIDTIEKAKKPRTRRSRF 786 Query: 620 -------VSEESTGVIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + T +KR + RR + + S S + Sbjct: 787 HSPSTTWSPNKDTAREKKRSQSPSPRRETGKESRKSQSPSPKKESARGRKSSRSQSPKKD 846 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ + + +P+ ++S + + R K Sbjct: 847 SGRERRPSQSRSPKRDGAKEGKRSESLSPKRDTSRENRRSQPRVKGSSPREK 898 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 2/122 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P ++ S E + + + + S+ Sbjct: 789 PSTTWSPNKDTAREKKRSQSPSPRRETGKESRKSQSPSPKKESARGRKSSRSQSPKKDSG 848 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 + RR + R P D G S+ S D S + + + E E Sbjct: 849 RERRPSQSRSPKRDGAKEGKRSESLSP--KRDTSRENRRSQPRVKGSSPREKSRSQSGER 906 Query: 690 YD 691 Sbjct: 907 ES 908 >gi|118098001|ref|XP_414870.2| PREDICTED: similar to PACT [Gallus gallus] Length = 1802 Score = 41.9 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 51/187 (27%), Gaps = 19/187 (10%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 A EK V+ P+ ++ + E L K S Sbjct: 1081 KTDSVKASSSQKDEKTLGTPRKVHPKVAKDHPEARPAKEEKAKKDHPKE--LKSEKPSSK 1138 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ED V + + + +R+R+ A H+A V S EP Sbjct: 1139 EDKSKKAVEKSKSSDAKAEKRKRKADEKADKEHEAASVKASKPETAESKTSPKGKTEPDG 1198 Query: 673 ITNHNLLENGAHG-------------FTENYDVS---IPPVSTP-EMESSNSSSDPIVKK 715 E G T VS +PPV P E +SS K Sbjct: 1199 EKGERTPEKDKSGFLITPAKKIKLNRETGKKIVSGENVPPVKEPAEKVEPSSSKVKQEKV 1258 Query: 716 TRWWKRR 722 +R+ Sbjct: 1259 KGKVRRK 1265 >gi|18698324|emb|CAC83859.1| synemin [Homo sapiens] Length = 1563 Score = 41.9 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 45/183 (24%), Gaps = 10/183 (5%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKN 593 E +G +++ + + + + + Q D++ ++ Sbjct: 410 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYIGEDSTIARES 469 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 A + S E E + R R R + Sbjct: 470 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFDSKEKA 529 Query: 654 SSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 S +N+ ++ + E +H + E + +E S + Sbjct: 530 SEERNLRWEELTKLDKEARQRESHQMKEKAKENDSLKEKSVREREVPISLEVSQDRRAEV 589 Query: 713 VKK 715 K Sbjct: 590 SPK 592 >gi|171685077|ref|XP_001907480.1| hypothetical protein [Podospora anserina S mat+] gi|170942499|emb|CAP68151.1| unnamed protein product [Podospora anserina S mat+] Length = 739 Score = 41.5 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 6/158 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE--ST 625 + S + + + ++E+L + E Sbjct: 327 NKEGTRSPTKEKEARSGRATSANQASKRRSTMNSREAAYDEAEALRRAIEASKEEAHLEP 386 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +R +R R + S+ +D + D +P + + G Sbjct: 387 EGVPRRPKRGRSDSEEKQEGAKRQRTSSRSVSPSVDKTADESDDPKGPSRNGNKSKPRGG 446 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N + + E + + K+ +RR+ Sbjct: 447 ARNNRNEKLSEKEEKERQ----RQEAANKRKGRAERRR 480 >gi|114645179|ref|XP_001164995.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 3 [Pan troglodytes] gi|114645181|ref|XP_001165094.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 6 [Pan troglodytes] Length = 1271 Score = 41.5 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 547 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 606 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 607 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 660 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 661 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 718 Query: 720 KRRK 723 R + Sbjct: 719 SRER 722 >gi|326482192|gb|EGE06202.1| hypothetical protein TEQG_05098 [Trichophyton equinum CBS 127.97] Length = 998 Score = 41.5 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 16/179 (8%), Positives = 37/179 (20%), Gaps = 9/179 (5%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603 E+ ++ + + Q + VW++ Sbjct: 544 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEEPQPEEQNSKQRFPSKDVWEEPPQ 603 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 + + R D D+S + Sbjct: 604 SQQLTTAVEAPADSEKSEKPEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPTKTQATSP 663 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ PS + + P T E+++ ++ P K R Sbjct: 664 TELKKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDANPPAPKSKPALPPR 722 >gi|150004382|ref|YP_001299126.1| hypothetical protein BVU_1828 [Bacteroides vulgatus ATCC 8482] gi|294776814|ref|ZP_06742277.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|149932806|gb|ABR39504.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|294449290|gb|EFG17827.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 504 Score = 41.5 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 6/117 (5%) Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + L ++ ++V +ES KR+ R+ + G + + Sbjct: 319 RRGEKPESLTESVKKNEPQKPVDLVEQESLTRFDKRKGNNSNRKKKRKPENNGNNGEGTP 378 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 +N +P + + EN P + + + + P Sbjct: 379 NENRRP------QQPKENRSQQPKENRPLREGRPKQPREPKENKAQQPREENGNRPK 429 >gi|149411346|ref|XP_001509803.1| PREDICTED: similar to interleukin 13 receptor alpha 1-binding protein-1 isoform 1 [Ornithorhynchus anatinus] Length = 644 Score = 41.5 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 34/154 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ + E + + + E ++ +E Sbjct: 211 HKDHEWEKLKEGEKDRNKNRISKQEKETEKSKDKERGKKEDKEREKDSEHDKEKEKKSSG 270 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R R+R + + E + Sbjct: 271 GRERDRQREKDKDKGKEREKDKRKERLRDGERSKEKERNKEQDKAEKKSTGSEETPSTKV 330 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P+ E+ NS+ T+ +RR Sbjct: 331 SAGPVKEAKPYPDKEAENSTKTARSVVTKVSRRR 364 >gi|281359563|ref|NP_001162826.1| bent, isoform G [Drosophila melanogaster] gi|272482442|gb|ACZ95095.1| bent, isoform G [Drosophila melanogaster] Length = 8588 Score = 41.5 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 56/188 (29%), Gaps = 5/188 (2%) Query: 532 LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDS-QAP 588 N+ ++ + E R + EL K ++K + ++ S + P Sbjct: 593 KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 652 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-- 646 K D++ + D ++ ++ + + ++ Sbjct: 653 EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 712 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 V S + + S D+ + + + + + +++ +T SS Sbjct: 713 KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 772 Query: 707 SSSDPIVK 714 P+ + Sbjct: 773 IDKKPLEQ 780 >gi|49257511|gb|AAH73943.1| LOC23117 protein [Homo sapiens] Length = 361 Score = 41.5 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 5/154 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 191 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 250 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFD-MYMEPSDITNHNLLENGA 683 ++ +R+R P G V + + EP ++ + Sbjct: 251 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 310 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 DV + K+ R Sbjct: 311 PKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRR 344 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 31/143 (21%), Gaps = 6/143 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK-SESLEDIQDNIVSEES 624 + + +D + + ++ P + + +E + Sbjct: 215 DNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVG 274 Query: 625 TGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ +RRR P G V + + + Sbjct: 275 DVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDV 334 Query: 680 ENGAHGFTENYDVSIPPVSTPEM 702 E P + P+ Sbjct: 335 EPSRKPKRRRAADVEPSLPEPKR 357 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 16/146 (10%), Positives = 32/146 (21%), Gaps = 2/146 (1%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + T + PS D N++ K + + + E ++R Sbjct: 214 DDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEM--EPPPEPKRR 271 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R A V S +E + Sbjct: 272 RVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRV 331 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTR 717 + P P+ + + + R Sbjct: 332 GDVEPSRKPKRRRAADVEPSLPEPKR 357 >gi|296138960|ref|YP_003646203.1| transcription termination factor Rho [Tsukamurella paurometabola DSM 20162] gi|296027094|gb|ADG77864.1| transcription termination factor Rho [Tsukamurella paurometabola DSM 20162] Length = 653 Score = 41.5 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 24/98 (24%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E + AP D +++A + + N + Sbjct: 102 KVEAPKAEATTAEAPKTEAPKNDAPKNDAPKNDAPKNDAAPADAPKDDAKSGAKNDGDQP 161 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 RR R +RR D + + D Sbjct: 162 QQQREGGRRERNQRRGQNADGQNQNDRQGGDQNRPDRD 199 >gi|194750229|ref|XP_001957530.1| GF23983 [Drosophila ananassae] gi|190624812|gb|EDV40336.1| GF23983 [Drosophila ananassae] Length = 1986 Score = 41.5 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 45/168 (26%), Gaps = 13/168 (7%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G G + ++++ + SE E Q+ ++E + Sbjct: 299 RGRSNDKAEARGKTRERSPAKKITKNKRKESFKEKDQIHGTFSEKSEKNQERGKTKERSK 358 Query: 627 V--------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 K R R R R + +S + + + + +N Sbjct: 359 EEDHNPNKIRHKSRGRSRNRAKTRERSKGKDLSRENPAERSPERNISRGKTRDRSNENNQ 418 Query: 679 LENGAHGFTENY-----DVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + SIP + ++ S + + + +R Sbjct: 419 SRGKTRDRSREKHQLLGKTSIPAGANDRGKTRERSKEKDNTRGKTRER 466 >gi|308512429|ref|XP_003118397.1| hypothetical protein CRE_00860 [Caenorhabditis remanei] gi|308239043|gb|EFO82995.1| hypothetical protein CRE_00860 [Caenorhabditis remanei] Length = 1719 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 31/147 (21%), Gaps = 1/147 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P+ + E + P+ S + E Sbjct: 210 KKEPTPAAKPADSSPKKAVPAKEPAKEPTKEPAKPAAKPRDSSPKKAVPVKSEPEVPPTP 269 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K ++ + D A V + + + +P T Sbjct: 270 VKNPVKKWKPPWEDDDTPAEEVPQPAPEKKTPVLAKKEPAKPVADTKPKETPKVPEKPAA 329 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715 P + P E DP KK Sbjct: 330 KPRDPSPKKAVPVKEPVKP-RDPSPKK 355 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 39/164 (23%), Gaps = 16/164 (9%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 ++K P + AP + + S + + ++E Sbjct: 178 VKKWKPPWEDDEAPVDDVKEPPAPEKKTPVLQKKEPTPAAKPADSSPKKAVPAKEPAKEP 237 Query: 625 TGVIRKRRRRRRRRRPA--------TDHHDAGVVSDVSSIQNVIDDSFDMYME-----PS 671 T K + R P + V + V + +D E P Sbjct: 238 TKEPAKPAAKPRDSSPKKAVPVKSEPEVPPTPVKNPVKKWKPPWEDDDTPAEEVPQPAPE 297 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 T + A + P V DP KK Sbjct: 298 KKTPVLAKKEPAKPVADTKPKETPKVPEKPAAKP---RDPSPKK 338 >gi|170093251|ref|XP_001877847.1| RNA polymerase II-associated protein [Laccaria bicolor S238N-H82] gi|164647706|gb|EDR11950.1| RNA polymerase II-associated protein [Laccaria bicolor S238N-H82] Length = 1095 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 54/188 (28%), Gaps = 22/188 (11%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + ++LR +E+L + + +++ + + E ++ V Sbjct: 912 QRRKYGDNMLRKGDEHLEKQRQFEADTQAKLEEARRKRQEEKDRLEDLERARMETLRVEA 971 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES--- 611 E+ + + +V +S K + + ++E Sbjct: 972 EKLAE------ERRLAREQAMEWTREVKMESDEERERKTKKVRKPKNDVGSGEEAEPKKK 1025 Query: 612 -------------LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 E+ EE +KR ++R R D AG + Sbjct: 1026 RRGKLKKAVSEQGDEEQAVFSDEEEVEKPTKKRPVKKRVVRDDDDEDVAGPRKKQFKSKE 1085 Query: 659 VIDDSFDM 666 V+ D+ D Sbjct: 1086 VLSDTDDE 1093 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 18/182 (9%), Positives = 48/182 (26%), Gaps = 4/182 (2%) Query: 536 RATIVEYEARFGVSINVVIGIELADK-LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 I + ++G ++ L + F + + ++ + D + Sbjct: 906 SRDIADQRRKYGDNMLRKGDEHLEKQRQFEADTQAKLEEARRKRQEEK-DRLEDLERARM 964 Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 E + + L + + E + + + R+ ++ R+P D Sbjct: 965 ETLRVEAEKLAEERRLAREQAMEWTREVKMESDEERERKTKKVRKPKNDVGSGEEAEPKK 1024 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + + + E T+ V V + E K Sbjct: 1025 KRRGKLKKAVSEQGDEEQAVFSDEEE--VEKPTKKRPVKKRVVRDDDDEDVAGPRKKQFK 1082 Query: 715 KT 716 Sbjct: 1083 SK 1084 >gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2] Length = 624 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 37/156 (23%), Gaps = 3/156 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--N 618 + + G +A + K IE + + + E + Sbjct: 316 EDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVA 375 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + RR + RR DA + S++ D + + N Sbjct: 376 QPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTEKPAGKRRRRGGKNK 435 Query: 679 LENGAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIV 713 A + + + + DP Sbjct: 436 ENREAGQAQQPRQSREARPAKLNRPPEVDGNRDPEE 471 >gi|299750554|ref|XP_001836825.2| hypothetical protein CC1G_04138 [Coprinopsis cinerea okayama7#130] gi|298408959|gb|EAU85042.2| hypothetical protein CC1G_04138 [Coprinopsis cinerea okayama7#130] Length = 823 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 33/129 (25%), Gaps = 17/129 (13%) Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRR----------------RRRRPATDHHDAGVVSDV 653 E D GV +R+RR R RR A + ++ V Sbjct: 696 EEGASEGDEDQPSSFKGVRTRRQRREGMDPKSISAEEGLRTTRNRRAAANPDNSKPVGKR 755 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + Q V S T +P + + N D + Sbjct: 756 KADQPVASGSPSKRRRLEPSAQSRSSSPKKPAPTNKKAAPLPRTPQRKA-AVNGRKDGAL 814 Query: 714 KKTRWWKRR 722 K R RR Sbjct: 815 PKKRVPGRR 823 >gi|242007925|ref|XP_002424766.1| PC4 and SFRS1-interacting protein, putative [Pediculus humanus corporis] gi|212508280|gb|EEB12028.1| PC4 and SFRS1-interacting protein, putative [Pediculus humanus corporis] Length = 551 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 39/152 (25%), Gaps = 5/152 (3%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 IE G + T + K + + + + E Sbjct: 91 KIENGEESTLGLWTSGDPPELIVKRNIKKAKKSEDSIQEIKEDDTQGAKSKQSKRKRDTE 150 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 T ++RR + + + + + D + + Sbjct: 151 DTEGDIDSKKRRIISHEKEETSNISRSGRIIKPKKFLYDEDGEDADSKAKPKMPTFSSPP 210 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 +S PP + PE++ N+ P K+ Sbjct: 211 P-----TQISSPPAAPPEIKKENTIKKPSPKE 237 >gi|170592847|ref|XP_001901176.1| Sec63 domain containing protein [Brugia malayi] gi|158591243|gb|EDP29856.1| Sec63 domain containing protein [Brugia malayi] Length = 748 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 68/227 (29%), Gaps = 28/227 (12%) Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYE--ARFGVSINVVIGIELAD-KLFYIEKGSPVQA 573 + T +D+ ++R + + + L F ++ Q Sbjct: 395 RRNRIITCADLANLNEIKRRQVLQSLSDAEYNDIVFVLQSMPRLNIDPHFEVQGEDDAQK 454 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE--DIQDNIVSEESTGVIRKR 631 + S ++ ++ + +E +E D ++ E V +++ Sbjct: 455 VTVGSVVTLKIILTRSSLLDLNKREEEMREINEKDAEPMEMMDDEEETNEERDNNVPKRK 514 Query: 632 -----RRRRRRRRPATDHH-----------------DAGVVSDVSSIQNVIDDSFDMYME 669 ++++ R +P + + + D + +D + + Sbjct: 515 IWEKPKKKQNRTKPTRNRQGHKVKVVKRVVVKVDENNKLKLEDQKKDRKENNDDMETNGD 574 Query: 670 PSDITNHNLLENGAHGFTENYD-VSIPPVSTPEMESSNSSSDPIVKK 715 + + + E + + E ++ + +++ +VKK Sbjct: 575 SENEELSDSEKGYVKNGNEKENGSGSEGMDEEESDNEDWANENMVKK 621 >gi|109502333|ref|XP_001075554.1| PREDICTED: similar to FLJ00128 protein [Rattus norvegicus] gi|293353590|ref|XP_341310.4| PREDICTED: similar to FLJ00128 protein [Rattus norvegicus] Length = 1569 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 33/145 (22%), Gaps = 5/145 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNIVSEEST 625 P + D + + A SES E + E Sbjct: 358 PGEGSSTGASSDSPSGAEADPDAAVLEAPEPPAEASGEASESCLLSGEAVGGVGQGTEGP 417 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA-H 684 +R + RR+ A S+ + D E + + + E Sbjct: 418 PDTPRRTGKGNRRKKRAAGRGAVSRGGESTPLSPRDKEETRQPEVLSLPSPSEQEPVECS 477 Query: 685 GFTENYDVSIPPVSTPEMESSNSSS 709 E D P + E Sbjct: 478 LVKEKEDSGKPESESKEELKPADEK 502 >gi|170027943|ref|XP_001841856.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167868326|gb|EDS31709.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 960 Score = 41.5 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 33/136 (24%) Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 + + K++ + + S+ + R R R + Sbjct: 120 SRVKATKRDKSHERRERSVEKAKDRKKDKSPKRSDGDKKKGKDRSRSRSKSVEKRSKDKR 179 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 S S + S D S + + + + + + S Sbjct: 180 RDRSGSRSTRKEDTKSKDKRRNRSRSASEKRSDKKRQDRSPSTSKKRDEEKSRKRSPSAG 239 Query: 708 SSDPIVKKTRWWKRRK 723 + K R +R+ Sbjct: 240 KRKEVESKKRDEPKRR 255 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 38/160 (23%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + +G + + W+ + +SE+ + + Sbjct: 283 SVSRGKQAERRRERSASNRRERMTRLRSPASAMKWEILKQRNVSQSENRDSDDGKRRGNK 342 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 KRR + + RR V S V + N + + Sbjct: 343 DKKDDEKRRGKSKDRRERKRSETPEVRQRNRSESPVERPRKRYDSPMAPKAFRNKSRSPS 402 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P S + S + + + + R+ Sbjct: 403 REKPRKERTKSPKASYRKDRSKSPVAKRRDRSRSPIEERR 442 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 43/163 (26%), Gaps = 5/163 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ K S ++ K + + + +S+ + S Sbjct: 132 ERRERSVEKAKDRKKDKSPKRSDGDKKKGKDRSRSRSKSVEKRSKDKRRDRSGSRSTRKE 191 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-----E 680 K +RR R R + D S D+ PS + E Sbjct: 192 DTKSKDKRRNRSRSASEKRSDKKRQDRSPSTSKKRDEEKSRKRSPSAGKRKEVESKKRDE 251 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + S++ V + + +RR+ Sbjct: 252 PKRRERSASKTGKVDERRRGRSRSNSGDRSRSVSRGKQAERRR 294 >gi|45552151|ref|NP_995598.1| bent, isoform C [Drosophila melanogaster] gi|45444797|gb|AAS64600.1| bent, isoform C [Drosophila melanogaster] Length = 8648 Score = 41.5 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 56/188 (29%), Gaps = 5/188 (2%) Query: 532 LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDS-QAP 588 N+ ++ + E R + EL K ++K + ++ S + P Sbjct: 653 KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 712 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-- 646 K D++ + D ++ ++ + + ++ Sbjct: 713 EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 772 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 V S + + S D+ + + + + + +++ +T SS Sbjct: 773 KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 832 Query: 707 SSSDPIVK 714 P+ + Sbjct: 833 IDKKPLEQ 840 >gi|325119771|emb|CBZ55324.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 2263 Score = 41.5 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 9/128 (7%), Positives = 29/128 (22%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G+ + ++ +++ E + E + Sbjct: 2057 GAKEARADEKAGGEKDEENDGKREEGDTDEMEEQREEDSGAGAPEEAPVEEKGDENAGEN 2116 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++RRR+R ++ ++ + E +D + + Sbjct: 2117 PSRQRRRKRADEDVSESRKQSGDRGARRQAEAEKEASEEAQENADEEEQSNESETKEAES 2176 Query: 688 ENYDVSIP 695 Sbjct: 2177 HADQSETK 2184 >gi|281359561|ref|NP_001162825.1| bent, isoform F [Drosophila melanogaster] gi|272482441|gb|ACZ95094.1| bent, isoform F [Drosophila melanogaster] Length = 8933 Score = 41.5 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 56/188 (29%), Gaps = 5/188 (2%) Query: 532 LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDS-QAP 588 N+ ++ + E R + EL K ++K + ++ S + P Sbjct: 868 KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 927 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD-- 646 K D++ + D ++ ++ + + ++ Sbjct: 928 EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 987 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 V S + + S D+ + + + + + +++ +T SS Sbjct: 988 KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 1047 Query: 707 SSSDPIVK 714 P+ + Sbjct: 1048 IDKKPLEQ 1055 >gi|332217894|ref|XP_003258097.1| PREDICTED: neurofilament heavy polypeptide [Nomascus leucogenys] Length = 997 Score = 41.5 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 11/184 (5%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +K + + EA+ E A E +P +A + S +A S K Sbjct: 599 EKSKSPEKEEAK---------SPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPVKE 649 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + ++++ E + + E + K + + P + + V + Sbjct: 650 EAKTPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPVKEEAKTP--EKAKSPVKEEA 707 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + + P + E + + V P TP E + S +D Sbjct: 708 KSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKTLVVKSPEAKTPVKEEARSPADKSP 767 Query: 714 KKTR 717 +K R Sbjct: 768 EKAR 771 >gi|301605148|ref|XP_002932194.1| PREDICTED: hypothetical protein LOC100170167 [Xenopus (Silurana) tropicalis] Length = 502 Score = 41.5 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 1/131 (0%) Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + E + E +S+ + + N E + R R R R + Sbjct: 280 DRELEREKERQRLERESKEKKRSRSNERGLERKRSKSRERHRTRSRSRDRKADRRERDKE 339 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + + +D D + + S Sbjct: 340 KEN-ERSRKRDYDKKGNGRDKEADRTRDRSKERRRSQEKKDREDKRHRDDRDSRKERRHS 398 Query: 713 VKKTRWWKRRK 723 +++ K+RK Sbjct: 399 RSRSKDRKQRK 409 >gi|312216586|emb|CBX96536.1| hypothetical protein [Leptosphaeria maculans] Length = 594 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 40/155 (25%), Gaps = 1/155 (0%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSESLEDIQDNIVSEESTG 626 +P K P+ D A PI + ++I++ Sbjct: 391 VAPAGRPRLNLAKRTVSEAQPAQDTTPSDKPNPFGAARPIDTATREKEIEEKRQLALRQK 450 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R +R A + ++ + ++ ++ + Sbjct: 451 KEADEKAREEKRAKDAAEKAASKATAPATTSAEKKEDGSEEKPRANFEILQRADDEGNSA 510 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ D V ++ DP W ++ Sbjct: 511 GQDEDAQGKIVDDKAVKPQEVVRDPAKADGSWRRK 545 >gi|195331685|ref|XP_002032530.1| GM23476 [Drosophila sechellia] gi|194121473|gb|EDW43516.1| GM23476 [Drosophila sechellia] Length = 642 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 31/159 (19%), Gaps = 7/159 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + DS P ++ + E + Sbjct: 256 RRRSNSDQSPPRRRRDQDSTPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRR 315 Query: 627 VIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 + RRRR RR D S + P + + Sbjct: 316 GNDQYPVRRRRDSDQSPPRRRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQS 375 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 N + + +K+RW Sbjct: 376 PNRKRDKSPRRRRDSDQSPPRNQSPPPRNRFREERKSRW 414 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 42/174 (24%), Gaps = 17/174 (9%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + + + +D P + S D + Sbjct: 215 RNDKPSPAGKRRDSDQSPPRKRTGKASPTRRRRDSDQSPPRRRRSNSDQSPPRRRRDQDS 274 Query: 627 VIRKRRR-------RRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +RRR RRR+ RR D + + Q + D P Sbjct: 275 TPPRRRRDSDQSPPRRRKADDQSPVRRERKDSDQSPPRKRRGNDQYPVRRRRDSDQSPPR 334 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNSSSDPIVKKTRWWKRRK 723 + + P P + P K+ + +RR+ Sbjct: 335 RRRDDKQTPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPNRKRDKSPRRRR 388 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 16/176 (9%), Positives = 39/176 (22%), Gaps = 1/176 (0%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 V + I++ + + + ++ + P Sbjct: 130 VKVKDEFSPSRRRSPVRIKQEKRSSSRDLSPARSRKPAKREESPQRGRRRAASSDQSPPR 189 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + D + + R+ R + PA D+ Sbjct: 190 RGRDG-DQSPSRRKRRDSDQSPPRKARNDKPSPAGKRRDSDQSPPRKRTGKASPTRRRRD 248 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + S + + S PP + + S ++ + RK Sbjct: 249 SDQSPPRRRRSNSDQSPPRRRRDQDSTPPRRRRDSDQSPPRRRKADDQSPVRRERK 304 >gi|195110799|ref|XP_001999967.1| GI24826 [Drosophila mojavensis] gi|193916561|gb|EDW15428.1| GI24826 [Drosophila mojavensis] Length = 2080 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 81/284 (28%), Gaps = 29/284 (10%) Query: 437 RSVEKKLKESLKKD-RARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRS 495 + VE ++ S +D A+ + S L+ + R ++ E K + Sbjct: 1364 KRVESEMYNSFGQDVSAKYKSKYRS---LMFNIKDRKNKTLFEKICAKQVEPKQLVRMTP 1420 Query: 496 QSSVALSILRSVEEYLLQY---TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 + + + EE + + + K + E++ V++ Sbjct: 1421 AELASQELAKWREEENRHQLDMIKKSELDLLSCAQNYVVKTHKGEEL--IESKMDVTL-- 1476 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 E + + +++ S + + D + + D K Sbjct: 1477 ---PEEEEAQEEGGRCKEKVDSIDSKKGSQSLDTSSTTDVSNKDHDHDRPSTAKEK---- 1529 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +S R R R +R + H+ + S ++ Sbjct: 1530 --------HSKSREKDHSRERDREKRHKSHRSHNNQSGTKRSRSRSSSRGHSQEKRSHKR 1581 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + ++ + + +S V + S+ P KKT Sbjct: 1582 HHHEHDMDKEKEQTSRDKQLSKEHVDKVQ---SSVQKKPTEKKT 1622 >gi|158287240|ref|XP_309322.3| AGAP011327-PA [Anopheles gambiae str. PEST] gi|157019556|gb|EAA05263.3| AGAP011327-PA [Anopheles gambiae str. PEST] Length = 356 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 3/137 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSESLEDIQDNIVSEESTGV 627 P + G S+ + + + LL PKS++ E + +E + Sbjct: 2 QPKEQKKTKGKSESSNEENANEPQTNGQHGAGWSVLLKNPKSKNAERRKAATEVDEPSKS 61 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI--DDSFDMYMEPSDITNHNLLENGAHG 685 +++ ++R+ + + Q + +++ + N + E+ Sbjct: 62 EKRKGKKRKADDGNGKSDETVDDAGSQKHQKKVKPNETVTVNGTKKQSENSSPSEHPKSN 121 Query: 686 FTENYDVSIPPVSTPEM 702 +E D + P Sbjct: 122 GSEKKDKTTNAKVKPVS 138 >gi|76628437|ref|XP_608884.2| PREDICTED: CG15625-like [Bos taurus] gi|297479961|ref|XP_002691118.1| PREDICTED: CG15625-like [Bos taurus] gi|296482910|gb|DAA25025.1| CG15625-like [Bos taurus] Length = 652 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 38/170 (22%), Gaps = 3/170 (1%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 V L + + P + D+ V E I Sbjct: 156 VPEETL-REQYEKTGLEPTEPTKPESPSEKPRKSIEEADQQPPKVTTSENPEEIQSKSPT 214 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 E ++ + K + T S+ S ++ + Sbjct: 215 EKRTESPEQAKPEFPEEKPSTATEETQEKTPEPLEETESEFSEEKSRKPIEDTVREPSGK 274 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + +E PP T ++ + + R RR Sbjct: 275 TIPEVQEETPSKSTSERVL--EPPQDTKPVDKKDKQKKSTEETDRTPSRR 322 >gi|327305565|ref|XP_003237474.1| hypothetical protein TERG_02195 [Trichophyton rubrum CBS 118892] gi|326460472|gb|EGD85925.1| hypothetical protein TERG_02195 [Trichophyton rubrum CBS 118892] Length = 422 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 3/160 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + N + + L S ++ D + + E Sbjct: 178 RETDPAPSSNQRIGIDGADIEIEEIPESSNAQVNVDDLSQEDSPAMNDATLSKLPAEKPR 237 Query: 627 VIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + RRRR R + +++ + + + +G Sbjct: 238 TRQNPARRRRGLRTEQVLEQVTGNETRPTRPPLVALNEHSKKAEDSASLRKEQATSSGDE 297 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV-KKTRWWKRRK 723 T+ D ++ E + +S P + ++TR RR+ Sbjct: 298 NSTKTGDRKPGGLAHTETPEDSETSTPNIARETRLRSRRQ 337 >gi|238878415|gb|EEQ42053.1| conserved hypothetical protein [Candida albicans WO-1] Length = 407 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 2/137 (1%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 ++ + + + ++ + + + ++E T I+KR RR ++ + Sbjct: 253 EKPEKSKNGEDVSKDKSVNKDTKGQEDVKLSKKSNGSKSTDEGTKEIKKRPRRSKKPKDT 312 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 ++ S + + + N ++ + S PP + Sbjct: 313 SEKTKKQTESKSGTTSDEKTEVAKPSKATKSKANKPTSKSSKPELKDEQSSSTPP--KKQ 370 Query: 702 MESSNSSSDPIVKKTRW 718 S + T+ Sbjct: 371 SRKPRSQPKDSQQTTKV 387 >gi|195504747|ref|XP_002099211.1| GE10789 [Drosophila yakuba] gi|194185312|gb|EDW98923.1| GE10789 [Drosophila yakuba] Length = 642 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 1/153 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + K SD P K + +S + ++ Sbjct: 262 RRRRDKDSTPPRRKKDSDQSPPRRRKAEDQSPARRVRKDSDQSPPRKRRGNDQSPVRKRR 321 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + RRRR + + +D + + + + Sbjct: 322 DSDQSPPRRRREDKQSPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPTRKRDKSPRR 381 Query: 687 TENYDVSIPPVSTPEMESSNSSSD-PIVKKTRW 718 + D S P +S + +K+RW Sbjct: 382 RRDSDQSPPRNRRSREQSPPPRNRFKEERKSRW 414 >gi|171680257|ref|XP_001905074.1| hypothetical protein [Podospora anserina S mat+] gi|170939755|emb|CAP64981.1| unnamed protein product [Podospora anserina S mat+] Length = 980 Score = 41.5 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 11/129 (8%), Positives = 30/129 (23%) Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 K E + + + + GV + +++ + Sbjct: 178 KRAEGLQSKTQTASTADAAETKTSEAAEAQPVVNGVNGDKAAHKKQPDSRAAEQPPRRNA 237 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + N ++ + + + + + V E + + Sbjct: 238 PRGARANDKEEKTSVTLPSVADASAWPEPKATAAAVKEQQPTRKSVEKTESSAKEGQDEA 297 Query: 712 IVKKTRWWK 720 KK W K Sbjct: 298 APKKKDWKK 306 >gi|297673173|ref|XP_002814649.1| PREDICTED: biorientation of chromosomes in cell division 1-like [Pongo abelii] Length = 2440 Score = 41.5 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 69/251 (27%), Gaps = 23/251 (9%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +G+ ++ + S + + A I H+ + ++R + +S Sbjct: 2109 SGFGTNEEIHSKSYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMPKRKRKQHYLS 2168 Query: 550 INVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIEC 596 IE + K S++ + + E Sbjct: 2169 SEDEPDDNPDVLDSRIETAQRQCSETEPHDTKEENSGDLEELSKTSSETNSTASRVMEEK 2228 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHD 646 + K E +D E+ +I+++R R R + TD Sbjct: 2229 DEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVEATLKMKDDSKTDTGI 2288 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 V SS + + + + E +++ ++ + + S+ Sbjct: 2289 VTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVASVRRRGRKPKRSLTVSD 2348 Query: 707 SSSDPIVKKTR 717 + ++ R Sbjct: 2349 DAESSEPERKR 2359 >gi|326478082|gb|EGE02092.1| origin recognition complex subunit Orc4 [Trichophyton equinum CBS 127.97] Length = 698 Score = 41.5 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 11/126 (8%), Positives = 28/126 (22%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 P + + + + + + P + ES + +E+ Sbjct: 5 SRPSKRRRVSNPDLDLEPERRESPSPTRTRKTRKDTKPATEPESAANAGTEEAAEKKDDE 64 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + RR R T + + + V +D+ + Sbjct: 65 APSQSTRRSARIRVTGNSVVSTSAGPPRPRVVEEDTTQNSKRSRKANISIAGSSSTKKLA 124 Query: 688 ENYDVS 693 Sbjct: 125 RKSSKP 130 >gi|242014266|ref|XP_002427812.1| nesprin, putative [Pediculus humanus corporis] gi|212512281|gb|EEB15074.1| nesprin, putative [Pediculus humanus corporis] Length = 6758 Score = 41.5 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 7/193 (3%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGS 583 L + KR T+ + + IEK P + L + K Sbjct: 896 LEDLKRETLSFIKHEQPTDERFTPDTRDPTRTVTIEKVTKIITYEEPDEKLKSLPRKDIE 955 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 S++ ++E + + + ++ V E + + + +P Sbjct: 956 YVLKESFEDDVEKKYTPKDKKDKKHKPDDKHKPEDKVKPEDKVKPEDKHKPEDKVKPEDK 1015 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 H V + D ++P D T + + Y + Sbjct: 1016 HKPDEKVKPEDKHKRDDKHKPDEKVKPVDSTKDYIFVKDKKEKSPKYAEHYEKTKPDDKH 1075 Query: 704 SSNSSSDPIVKKT 716 + P K Sbjct: 1076 KPDDKVKPDEKHK 1088 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 7/193 (3%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGS 583 L + KR T+ + + IEK P + L + K Sbjct: 1289 LEDLKRETLSFIKHEQPTDERFTPDTRDPTRTVTIEKVTKIITYEEPDEKLKSLPRKDIE 1348 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 S++ ++E + + + ++ V E + + + +P Sbjct: 1349 YVLKESFEDDVEKKYTPKDKKDKKHKPDDKHKPEDKVKPEDKHKPEDKVKPEDKVKPEDK 1408 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 H + D ++P D T + + Y + + Sbjct: 1409 HKPDDKHKPDDKHKPEDKHKPDDKVKPVDSTKDYIFVKDKKEKSPKYADLYEKAKPDDKD 1468 Query: 704 SSNSSSDPIVKKT 716 + P K Sbjct: 1469 KPDEKVKPDDKPK 1481 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 7/193 (3%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG-------SPVQALVNTGHKVGS 583 L + KR T+ + + IEK P + L + K Sbjct: 3466 LEDLKRETLSFIKHEQPTDERFTPDTRDPTRTVTIEKVTKIITYEEPDEKLKSLPRKDIE 3525 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 S++ ++E + + + ++ V E + + + +P Sbjct: 3526 YVLKESFEDDVEKKYTPKDKKDKKHKPDDKHKPEDKVKPEDKHKPEDKVKPEDKVKPEDK 3585 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 H + D ++P D T + + Y + + Sbjct: 3586 HKPDDKHKPDDKHKPEDKHKPDDKVKPVDSTKDYIFVKDKKEKSPKYADLYEKAKPDDKD 3645 Query: 704 SSNSSSDPIVKKT 716 + P K Sbjct: 3646 KPDEKVKPDDKPK 3658 >gi|156541982|ref|XP_001599540.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 2213 Score = 41.5 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 45/160 (28%), Gaps = 5/160 (3%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +++ + + V S ++ S + + + L+ + ++ + EE Sbjct: 688 ELKENRKRKDDFEEDYDVASIPKSKSRKIEKKESKELDVLIDRVRKSKVKKESPDRSVEE 747 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + ++ R+ +D + S ++ E Sbjct: 748 GEKLSSPTAVKKNRKANKEKPESPTKHNDKEKEKKSKKKSHELLK-----NGELKKECEV 802 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + P E N + K R +RR+ Sbjct: 803 KSIERTTNANKSPAKKIESSVKNDTESLDSLKDRISERRR 842 >gi|326476626|gb|EGE00636.1| origin recognition complex subunit Orc4 [Trichophyton tonsurans CBS 112818] Length = 688 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 11/126 (8%), Positives = 28/126 (22%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 P + + + + + + P + ES + +E+ Sbjct: 5 SRPSKRRRVSNPDLDLEPERRESPSPTRTRKTRKDTKPATEPESAANAGTEEAAEKKDDE 64 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + RR R T + + + V +D+ + Sbjct: 65 APSQSTRRSARIRVTGNSVVSTSAGPPRPRVVEEDTTQNSKRSRKANISIAGSSSTKKLA 124 Query: 688 ENYDVS 693 Sbjct: 125 RKSSKP 130 >gi|302406280|ref|XP_003000976.1| ankyrin repeat protein [Verticillium albo-atrum VaMs.102] gi|261360234|gb|EEY22662.1| ankyrin repeat protein [Verticillium albo-atrum VaMs.102] Length = 1462 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 53/165 (32%), Gaps = 8/165 (4%) Query: 566 EKGSP---VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 E+ P + + + D + E + P S D Sbjct: 832 ERLKPELLAEKYHDRTKALKRDESRERLPGSSEPPSKRHRSSVTPPHSSKSDRDGAEGPV 891 Query: 623 ESTGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + + + + RR+R + G +S++ D ++PS T+ + Sbjct: 892 KRRRLDTEGKERRQRAADSADERSRSTQDGSAKPKASLRETDGDGQRTTLKPSSDTDSHR 951 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + H ++ + + +++ ++ K++ KRR+ Sbjct: 952 KDQTRHSDSDKSSIHVKSEDV-DVDMRDAPLPKAPKESDDEKRRR 995 >gi|194909374|ref|XP_001981933.1| GG12319 [Drosophila erecta] gi|190656571|gb|EDV53803.1| GG12319 [Drosophila erecta] Length = 654 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 4/155 (2%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 L + S+ + + E D+ + +E + + + + Sbjct: 341 DNLRDNKDHRKSNDGRSRTEDHREPKRADDPRNRMSSAERKKAREQRHQEQSERDDRKNV 400 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 RRR R R + + + + + D + E S + + Sbjct: 401 RRRTRSR-EKQEQNRSRSRNWPNGSARKNSDRERIRNERSSRSRDRTHRRHSRSRDREER 459 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWW---KRRK 723 P E E S S +++R +RR+ Sbjct: 460 RRSRPRDQLERERSRSRDQKERRRSRPREQNERRR 494 Score = 41.1 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 37/151 (24%), Gaps = 7/151 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + S D+ + L +S S + + Sbjct: 430 DRERIRNERSSRSRDRTHRRHSRSRDREERRRSRPRDQLERERSRSRDQKERRRSRPREQ 489 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+ R R + + + D +S Q + N Sbjct: 490 NERRRSRSRDQTEKRPPQNRDHNKSRRFNSPQERRRTEDSGGSHRDTLRNQ-------KR 542 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E S V+ S+ + P K+ Sbjct: 543 SPERRQQSRDRVNHRVDTHSSRNKSPEKKRK 573 >gi|92116125|ref|YP_575854.1| helicase-like [Nitrobacter hamburgensis X14] gi|91799019|gb|ABE61394.1| helicase-like protein [Nitrobacter hamburgensis X14] Length = 1140 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 16/171 (9%), Positives = 30/171 (17%), Gaps = 2/171 (1%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + A+ D P+ + + A + Sbjct: 909 ETSPSAVSPPDIADSAASDDAVETAPADATPDQSVPADAEGVASAEIAAADASSAHATDA 968 Query: 613 EDIQDN--IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + R R RR+ V+D + + Sbjct: 969 APATVEVWRPGGRPADRRPRHDRSRHRRQQPRQDGAQPAVADGEAGEGAQKRERHGRGRR 1028 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 G + P DP K + R Sbjct: 1029 ERQKEARRPSTGVAAEGASAGSESAPGRELREGKGRPQRDPFQGKGKNRDR 1079 >gi|301620046|ref|XP_002939395.1| PREDICTED: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 isoform 1 [Xenopus (Silurana) tropicalis] Length = 1452 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 43/170 (25%), Gaps = 9/170 (5%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 E ++ + +++ + D + K +S Sbjct: 1258 KGNREYGRPH-----NEHHTWNGSSKNYSVQNNRKDRSPEGRRPRQADRTMTNGQKRQSP 1312 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDH-HDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E N + + + +R + RR+ + + V S D +M+ Sbjct: 1313 EKR--NEGTRSAENTLERREKNERRKEVSPQKPRERSPVRRRDGSPTRRRKSLDRFMDQR 1370 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + ++ D E S + + T R Sbjct: 1371 RSPDRRRESSPDRRRAKSTDRRRERSPERRRERSPDKRNKEQR-TSNRDR 1419 >gi|299746231|ref|XP_001837827.2| hypothetical protein CC1G_12950 [Coprinopsis cinerea okayama7#130] gi|298406960|gb|EAU83991.2| hypothetical protein CC1G_12950 [Coprinopsis cinerea okayama7#130] Length = 842 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 43/154 (27%), Gaps = 3/154 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PVQ + +++ S + PS + K + E+ Sbjct: 692 PVQEDEPSENEIDSTPKRPSRESQATTPTTPPPHGTARKRARSPSDSETSDEEDDELPGP 751 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 R ++RR + D S+ + F PS I + G T Sbjct: 752 NTRAKKRRAAAEQEPRDEPPTLRRSTRAIKVAKRFGQEDVPSVIQRIQKPGANSKGSTTR 811 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E + P K+R +R+ Sbjct: 812 SKSRGGHSKSTEGRKHD---APAKAKSRTKDKRR 842 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 3/160 (1%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE---CVWQDEALLPIPKSESLEDIQDNI 619 +E+ P + + +AP + V +DE S +++ Sbjct: 656 HDVEEPEPPSGHTGSAKGNPRNVRAPKAKEKSAAKPPVQEDEPSENEIDSTPKRPSRESQ 715 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 + +T R+R R ++ D EP D Sbjct: 716 ATTPTTPPPHGTARKRARSPSDSETSDEEDDELPGPNTRAKKRRAAAEQEPRDEPPTLRR 775 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 A + + P ++ ++S +++ Sbjct: 776 STRAIKVAKRFGQEDVPSVIQRIQKPGANSKGSTTRSKSR 815 >gi|291238096|ref|XP_002738967.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 1326 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 71/247 (28%), Gaps = 25/247 (10%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + +L +E + + N+ LLN+++ + E E R Sbjct: 537 KYDAERDKMLHRHDEEMNKLLQQNLTPEQMQQKKAELLNKQQIELAELEKRL-------A 589 Query: 555 GIELADKLFYIE----KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + ++ + + + + H + + V +EA+ + E Sbjct: 590 EERRHQEQEALQDWELRYARAKLDLKEKHYQEYAEALRKFLSDKSNVSAEEAMKAAQQLE 649 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH--------DAGVVSDVSSIQNVI-- 660 ++ + E + R+ RR + D DA + + + Sbjct: 650 DVKRRLERERKENEDRLKRESEEFERREKRKFDESISAYEKQLDAESRKEKERTERSVAA 709 Query: 661 --DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS--SDPIVKKT 716 ++ E L G T+ I ++ + +D + ++ Sbjct: 710 LNKRKEELLQEKQQKMKEQLENLKGQGATQEEQDRIMEEHQKDIAKLTNKMDADRLRMQS 769 Query: 717 RWWKRRK 723 +R + Sbjct: 770 GLQERLR 776 >gi|326479654|gb|EGE03664.1| hypothetical protein TEQG_02695 [Trichophyton equinum CBS 127.97] Length = 6467 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 12/164 (7%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + L G + G + ++ PS +E ++ + E Sbjct: 4097 GETHVEQPLLNQGAGKDQETPHLEGEPIPKETGRPSETLAVEPSTEESPAIGNDLPEQHT 4156 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 D + ++R++R+ + A+ + G + S ++ +D++ + P + Sbjct: 4157 DKPLSAKE--------RKRKKRQEKAAASLEDEPGAKEESVSRESTLDETLGTELIPEER 4208 Query: 674 TNHNLLE----NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 T L E+ + PE S S P+ Sbjct: 4209 TPEKPLSAKEKKKKKKNQEDQAAGEEFFAKPEEVPGTSESMPVE 4252 >gi|326470736|gb|EGD94745.1| hypothetical protein TESG_02250 [Trichophyton tonsurans CBS 112818] Length = 6467 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 12/164 (7%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + L G + G + ++ PS +E ++ + E Sbjct: 4097 GETHVEQPLLNQGAGKDQETPHLEGEPIPKETGRPSETLAVEPSTEESPAIGNDLPEQHT 4156 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 D + ++R++R+ + A+ + G + S ++ +D++ + P + Sbjct: 4157 DKPLSAKE--------RKRKKRQEKAAASLEDEPGAKEESVSRESTLDETLGTELIPEER 4208 Query: 674 TNHNLLE----NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 T L E+ + PE S S P+ Sbjct: 4209 TPEKPLSAKEKKKKKKNQEDQAAGEEFFAKPEEVPGTSESMPVE 4252 >gi|109073769|ref|XP_001098928.1| PREDICTED: biorientation of chromosomes in cell division protein 1-like [Macaca mulatta] Length = 3048 Score = 41.5 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 23/247 (9%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 ++ + S + + A I H+ + ++R + +S + Sbjct: 2722 NEEIHSKSYNKGEISSDRKDNAEAISSHSVEADPKEVEEEERHMPKRKRKKHYLSSEDEL 2781 Query: 555 GIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 IE + K S++ + + E Sbjct: 2782 DDNPDVLDSRIETAQRQCSETEPHDTKEENSRDLEELSKTSSETNSTASRVMEEKDEYSS 2841 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHDAGVVS 651 + K E +D E+ +I+++R R R + TD A V Sbjct: 2842 SETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKMKDDSKTDTGIATVEQ 2901 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 S + + + + E +++ ++ + T + S+ + Sbjct: 2902 SPPSSKLKVMPTDESNKETANLQERSISNDDGEEKTVASVRRRGRKPKRSLTVSDDAESS 2961 Query: 712 IVKKTRW 718 ++ R Sbjct: 2962 EPERKRQ 2968 >gi|67536854|ref|XP_662201.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4] gi|40741209|gb|EAA60399.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4] gi|259482571|tpe|CBF77179.1| TPA: nuclear condensin complex subunit Smc4, putative (AFU_orthologue; AFUA_2G02170) [Aspergillus nidulans FGSC A4] Length = 1476 Score = 41.5 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 12/161 (7%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE--------CVWQDEALLPIPKSESLEDI 615 I +G P + ++ N+ +E P+P+ ++ Sbjct: 3 SIARGRPSRRSAAARKSYVEETSESEDPGNVTPTPSYPDGDDDGEEEFTPVPQKKAPARA 62 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 ++ E+ RR RR R TD V+D S I + D S T+ Sbjct: 63 SRRRMTSETPKAQAPRRSRRSRTAEPTD---TSSVADPSEDGESIASAQDESESASPNTS 119 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 G H E+ + S SS P +K+ Sbjct: 120 VKRKSMG-HEEPESPSRTATMKRKSMARKSRVSSTPNPEKS 159 >gi|149599239|ref|XP_001520693.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 1068 Score = 41.5 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 3/150 (2%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G P + S K + E+ S + Q + Sbjct: 784 GDPGSPPPQRQQGASPAPPSFSGKKRNRHSGETESQSGPEAESSPGNGQGTEPRQGKKRR 843 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R+R RRPA ++ + + N G+ T Sbjct: 844 RRRRHGEDGHRRPAAG---PESLAWEDRAGRGDGSRGARREAEPESRDENQEPGGSQAET 900 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + E S+P + Sbjct: 901 PAEAPKKNKKRKRDSEQEAEESEPRPTPSG 930 >gi|315222137|ref|ZP_07864046.1| translation initiation factor IF-2 [Streptococcus anginosus F0211] gi|315188763|gb|EFU22469.1| translation initiation factor IF-2 [Streptococcus anginosus F0211] Length = 940 Score = 41.5 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/128 (9%), Positives = 41/128 (32%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 T K ++++ + K + + E + ++ + +R +++ Sbjct: 72 TAVKETTEAEKKAEPKAVAPKQKSEVEMKSAPAKPKSRNFKAEREARAKEQAERRNKQQD 131 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R + D + + N + + + ++ ++ N + E +I Sbjct: 132 NRPQKQQNGDKRNRDERNQRNNRSNQNRNDRGNRNEQRDNRNHRNQDNRRQEQNRSNIAN 191 Query: 697 VSTPEMES 704 + P+ Sbjct: 192 QNRPQTNQ 199 >gi|325114325|emb|CBZ49882.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 1552 Score = 41.5 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 9/167 (5%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + + + D+ +DE + E++E Sbjct: 1264 EGQKGEEDEKERNGEEDEKERNGEEDEKERNGEEDEKETNGEEDETVEGELRPEDEGRRK 1323 Query: 626 GVIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE--- 680 GV +R +R R R R + + + + + +++ E Sbjct: 1324 GVSERRAKRGRVARHREEKEGNGVEETVEQENKEATLEEMTRDQEEAEGGGEGTGEPATE 1383 Query: 681 ----NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 A + + VS+ + +SS+S+ P ++T ++RK Sbjct: 1384 YTHCPSAEQGEDAHAVSVDKGAAASEDSSSSAQTPAEEETGKRRKRK 1430 >gi|221485909|gb|EEE24179.1| trichohyalin, putative [Toxoplasma gondii GT1] Length = 2236 Score = 41.5 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 13/231 (5%) Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 I+R EE + + + N+ + + E +I + E Sbjct: 314 EIVRLEEEKGVLEKT----LSEERKKLEEERNEWQMHRAQMEKGKQEAIEKAVEEERKKM 369 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD----EALLPIPKSESLEDIQD 617 E+ +A G + + K +E ++ A K E++E + Sbjct: 370 EQEREEWQKHRAEEEKGKQEAIEKAVEEERKKVEQEREEWQKHRAEEEKGKQEAIEKAVE 429 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + ++ R R + + V + + ++ E Sbjct: 430 EERKKMEQEREEWQKHRAEEERGKQEAIEKAVEEERKKTEQEREEWQKHRAEEEKGKQEA 489 Query: 678 LLENGAHGFTENYDVSIP-----PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + + + +K +R + Sbjct: 490 IEKAVEEERKKMEQEREEWQKHRAEEEKGKQEAIEQAVKEERKKMEQEREE 540 Score = 38.4 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 18/231 (7%), Positives = 54/231 (23%), Gaps = 16/231 (6%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 EE + A V + + E E +I + E Sbjct: 445 HRAEEERGKQEAIEKAVEEERKKTEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQE 504 Query: 565 IEK----GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 E+ + + + + ++ E + A K E++E Sbjct: 505 REEWQKHRAEEEKGKQEAIEQAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEER 564 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + ++ R + + + V + ++ ++ E + + Sbjct: 565 KKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREEWQKHRAEEEKGKQEAIEK 624 Query: 681 NGAHGFTENYDVSIP------------PVSTPEMESSNSSSDPIVKKTRWW 719 + + + + + + ++ W Sbjct: 625 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKARAVEEERNKMEQEREQW 675 >gi|195447866|ref|XP_002071405.1| GK25779 [Drosophila willistoni] gi|194167490|gb|EDW82391.1| GK25779 [Drosophila willistoni] Length = 1170 Score = 41.5 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 3/156 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + +EK + + + + DK IE + + K + LE + + Sbjct: 383 EEIVVEK---DEETKDDDNTDKKKEEQNEVDKVIENEEEKQKETDEEKEKPLEAEKVEEI 439 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + V K+ + + + + + Q + E + E Sbjct: 440 IGDDKEVEDKQEPQEQPEPVNEETEIIKNNDETETEQEQKPEPEADKAEEETQVIEQVAE 499 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E + E + +D K T Sbjct: 500 TEPELTQETEMQIQAEPEPEKAELEENKADEAEKDT 535 >gi|13195656|ref|NP_077192.1| smoothelin-like protein 1 [Mus musculus] gi|81903156|sp|Q99LM3|SMTL1_MOUSE RecName: Full=Smoothelin-like protein 1; AltName: Full=Calponin homology-associated smooth muscle protein; Short=CHASM gi|12805667|gb|AAH02317.1| Smoothelin-like 1 [Mus musculus] gi|123233595|emb|CAM23315.1| smoothelin-like 1 [Mus musculus] gi|148695357|gb|EDL27304.1| smoothelin-like 1 [Mus musculus] Length = 459 Score = 41.5 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 2/170 (1%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 LA + +++ P D E + +++ + Sbjct: 131 EAMLASEKQKVDEKETNLESKEKSDVNDKAKPEPKEDAGAEVTVNEAETESQEEADVKDQ 190 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDI 673 + + + + P T+ + G ++ VI S + + E P+D Sbjct: 191 AKPELPEVDGKETGSDTKELVEPESP-TEEQEQGKENESEERAAVIPSSPEEWPESPTDE 249 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + A T S S E+ S + P KK R+ Sbjct: 250 GPSLSPDGLAPESTGETSPSASESSPSEVPGSPTEPQPSEKKKDRAPERR 299 >gi|298710406|emb|CBJ25470.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1106 Score = 41.5 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 46/157 (29%), Gaps = 2/157 (1%) Query: 564 YIEKGSPVQAL--VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + + + + V S+ S D N + D+ E Sbjct: 686 SVHRSQTKERIQLDLSRTAVRGSSRGSSNDSNASLGFDDDDDAGRSNGTKDEPRASKARG 745 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + G + + R ++ + + + + + + + + Sbjct: 746 NGAQGRDKGKAPRGDEKQSSGAKKNTSSNAPPHRNGSSGPSATAENAGKAGASKSDFTRT 805 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 G + ++ + E E++ +S P VK T+ Sbjct: 806 RTRGRNASNALARTSSTAVEAEAATASKKPGVKNTKQ 842 >gi|296234004|ref|XP_002762257.1| PREDICTED: hypothetical protein LOC100394361 isoform 2 [Callithrix jacchus] Length = 727 Score = 41.5 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 33/156 (21%), Gaps = 1/156 (0%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G + D + + + P + + Sbjct: 396 GKDRDRSQSESPNKQRDCSRSRSPSEKKDHTRGRSRSPSQERARGRSRSPSQERARGRSR 455 Query: 628 IR-KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R R R R P+ + S S + + Sbjct: 456 SPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSR 515 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + +P E S K++ R Sbjct: 516 SPSQERARGRSRSPSQERDRGRSGSPSKESERRHSR 551 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 40/150 (26%), Gaps = 1/150 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + ++ K SQ+ S +K +C + + + Sbjct: 386 ERDRRGSSSPGKDRDRSQSESPNKQRDCSRSRSPSEKKDHTRGRSRSPSQERARGRSRSP 445 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R R R R P+ + S S + + + Sbjct: 446 SQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSP 505 Query: 689 NYDVSIPPVSTPEMESSNS-SSDPIVKKTR 717 + + + +P E + S P ++ R Sbjct: 506 SQERARGRSRSPSQERARGRSRSPSQERDR 535 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 36/158 (22%), Gaps = 4/158 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + G + + P E + E + G Sbjct: 429 RSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARG 488 Query: 627 VIR---KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 R + R R R R P+ + S S + + + Sbjct: 489 RSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRSGSPSKESERR 548 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 H + + + + +P + + K R R Sbjct: 549 HSRSPSQERARGCSRSP-SQERDHGRSGSPSKERERGR 585 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 40/154 (25%), Gaps = 1/154 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + K + S K+ + + S S + + + Sbjct: 374 ERSHSPSRSSSKERDRRGSSSPGKDRDRSQSESPNKQRDCSRSRSPSEKKDHTRGRSRSP 433 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R R R R P+ + S S + + + Sbjct: 434 SQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSP 493 Query: 689 NYDVSIPPVSTPEMESSNS-SSDPIVKKTRWWKR 721 + + + +P E + S P ++ R R Sbjct: 494 SQERARGRSRSPSQERARGRSRSPSQERARGRSR 527 Score = 37.3 bits (84), Expect = 8.9, Method: Composition-based stats. Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 4/142 (2%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P + +T + S SQ + ++ + S+ + S+E Sbjct: 419 PSEKKDHTRGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRS 478 Query: 630 K----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R R R P+ + S S + + + Sbjct: 479 RSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERARGRSRSPSQERDRGRS 538 Query: 686 FTENYDVSIPPVSTPEMESSNS 707 + + + +P E + Sbjct: 539 GSPSKESERRHSRSPSQERARG 560 >gi|325911068|gb|ADZ45262.1| pneumococcal surface protein C [Streptococcus pneumoniae] Length = 729 Score = 41.5 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++ + + V + L N K + E Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + + E+ P + D E LP P + Sbjct: 243 KLKEAVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + K ++ RR T+ + + S V + ++ E + Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + N A E+ + + + KK +RK Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404 >gi|242780642|ref|XP_002479639.1| hypothetical protein TSTA_025240 [Talaromyces stipitatus ATCC 10500] gi|218719786|gb|EED19205.1| hypothetical protein TSTA_025240 [Talaromyces stipitatus ATCC 10500] Length = 186 Score = 41.5 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 43/170 (25%), Gaps = 4/170 (2%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 +L + + E + + S+ QA + + ++ Sbjct: 4 QSSEDLQSESVHDEANTTSEEPRTEEAVPDSEPQAETEMETETTEKTEQDRELTTIQRPA 63 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + E R+ R+ + + ++ S E Sbjct: 64 GPRDPPPSAIEDARAARRESRKGNEKEDRNQRPARRPTGPRDRPPSTVEKSRAARRESKA 123 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T + PP S P S S ++ + R W+RR Sbjct: 124 KTKDKHQRPVSRLAG----PKDPPPSKPREFHSTVSDRSLMYRKRIWRRR 169 >gi|198421268|ref|XP_002122655.1| PREDICTED: similar to zonadhesin, partial [Ciona intestinalis] Length = 2534 Score = 41.5 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 61/665 (9%), Positives = 184/665 (27%), Gaps = 37/665 (5%) Query: 89 LLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSN 148 L + N +Q + + + V + E + +A+ + + Sbjct: 1382 LDERKNASQEERDQSSASAEEDKVKMSKTIDDELDSMVASGLITDDVREQLKQKIINQER 1441 Query: 149 VEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSV 208 + + ++ K R + K ++L + +E+ A Sbjct: 1442 DLNERMEQKREMQIKSMRDRMAERKKKRMKMLQEKHEREKVELGDDVPDLEERHAAERDA 1501 Query: 209 LMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYL 268 L E + N + KE+ + A + + + E+ ++ Sbjct: 1502 LEAELDAEEYSVEREINETIQVEHKELLSQIHKSAITELATQENMDADKHQELLDKYQRG 1561 Query: 269 MRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFMKLL 328 + ++ A + + + + E ++ ++ E Sbjct: 1562 LDNYE-HLNQAKHLKHAQDLKARLAARRTRRAAEIQRSEEEKLLLKKREEEERMIREMEE 1620 Query: 329 MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVNSGR 388 ++ + I + E E + E +V Sbjct: 1621 KRREEEKRKEEDGGIMIPHINITEGHEVQALAREQERQQA------ENETEKLAEVERLN 1674 Query: 389 STREHCIEDTALQTNLEAAEEIARQ-LRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESL 447 E + + EE + ++D + D+ +++ + + +E Sbjct: 1675 HDLEKKEQKEEKSLERKLQEEEDKIKSEMKDKHDAEIRARTDLTDEQMQQLMAAHQQELD 1734 Query: 448 KKDR--ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 + DR + Q + +R+ ++S+L + + + + S V + Sbjct: 1735 ELDRGLEKQQNKQRAALRDRLAARRAKKTSLLRNKQETDAKKEEIEQRKEMSQVKAKSAK 1794 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRA-TIVEYEARFGVSINVVIGIELA--DKL 562 E+ + + V+ +L Q++ + + EA F + +++ L Sbjct: 1795 EAEKAAIIEGIQQNGAESSHKVIQRVLEQRQNQEMKDLEAEFALKKKIILDECLQDIRDQ 1854 Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV-----WQDEALLPIPKSESLEDIQD 617 F + + + + ++ ++ +P + + L + ++I++ Sbjct: 1855 FRKKMDAMLNRHESELEQLENEGLSPDLLEARREELFGRQKDEIRSLEQNHKKECKEIEE 1914 Query: 618 NIVSEESTGVIRKRRRRRRRR---------------RPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + + + + + S+ Q + + Sbjct: 1915 HATAGWNLDFAKAKYELKEKHYQEYAQTVRELAPSVAQSAQQAEQSAQRLESTKQRLEQE 1974 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS----DPIVKKTRW 718 + + + E E D + E + K+ Sbjct: 1975 RAEAEKKFAQERLELEEEGKRRIAMEMEDFEKQLAEETKAEKLKAEKTLQTLEKRKEKML 2034 Query: 719 WKRRK 723 +R+ Sbjct: 2035 KDKRE 2039 >gi|237832441|ref|XP_002365518.1| hypothetical protein TGME49_068010 [Toxoplasma gondii ME49] gi|211963182|gb|EEA98377.1| hypothetical protein TGME49_068010 [Toxoplasma gondii ME49] Length = 4032 Score = 41.1 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 6/145 (4%), Positives = 30/145 (20%), Gaps = 5/145 (3%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + ++ + QA + + + + E+ + + Sbjct: 1970 EEDVVDSTRTEDDEQRDSETGNEEEQADTEAPERAEEPKRLSADRSVATAKNEENTEELG 2029 Query: 621 SEESTGVIRKRRRRRRRRRPATDHH-----DAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + ++ + + D + + + E Sbjct: 2030 ELQERREPKREEKGKESGTALRDEDAEFLGENAERKGLDEANETATEKQKSGQETETQKK 2089 Query: 676 HNLLENGAHGFTENYDVSIPPVSTP 700 + G ++ + + Sbjct: 2090 DDKGAESVAGGQKDACLDKEEAAEK 2114 >gi|308510891|ref|XP_003117628.1| CRE-MEC-2 protein [Caenorhabditis remanei] gi|308238274|gb|EFO82226.1| CRE-MEC-2 protein [Caenorhabditis remanei] Length = 1293 Score = 41.1 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 2/123 (1%) Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + E + +E + + + ++ + + + ++ S + I Sbjct: 685 SEVGEHESVEMKTVEKKKEKAEATITLTMVSKDKKTKSQEKSKQEKHHETTESDSSKETI 744 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + + E+ + N PP T ++ KKT + Sbjct: 745 RKDSTEKISKEKVKKQSSKEDTTDKDSRNE--GRPPSGTTHSSVRKLKAESFSKKTGHGE 802 Query: 721 RRK 723 RK Sbjct: 803 PRK 805 >gi|189195316|ref|XP_001933996.1| cupin domain containing protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979875|gb|EDU46501.1| cupin domain containing protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 685 Score = 41.1 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 51/177 (28%), Gaps = 15/177 (8%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + + + S + ++G DS + + ++ ++P P E + Sbjct: 184 EESVVQEEITANEASVAAVKESFVAQIGEDSINEAEEVEDLVDQEESEIVPEPVKEPAKR 243 Query: 615 IQDNI-------VSEESTGVIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQNVIDDSFDM 666 + E++ ++R R + A+ G S ++ Q Sbjct: 244 GRKRKSDAVNISEEEQAVVEQPRKRGRPPGAKATASASEKTGKKSAPAAAQRRRSQRVSD 303 Query: 667 YMEPSDITNHNLLENG-------AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 EP +++ PP P+ E ++++ K Sbjct: 304 ISEPDPSIVEAPVDDSIDQSEQIEEAPVAPKRRGRPPRVQPDAEEEHTATAKPAKND 360 >gi|195035285|ref|XP_001989108.1| GH10228 [Drosophila grimshawi] gi|193905108|gb|EDW03975.1| GH10228 [Drosophila grimshawi] Length = 5820 Score = 41.1 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 39/171 (22%), Gaps = 12/171 (7%) Query: 559 ADKLF------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + I +G+ + DS S S Sbjct: 1576 ESPDYDDIPVSKIPRGANDEDKDAEAGDETVDSVPDSAGDAASTPSSRRDRKRSTARSSR 1635 Query: 613 EDIQDNIVSEESTGVI----RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + + ++RR R R + D + + DS Sbjct: 1636 RNATSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTMDRTPPPSPPPDSELDSN 1695 Query: 669 EPSDITNHNLLE--NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + N + + + + S+ S + E ++S + Sbjct: 1696 KRRSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKEKKSASVNAANSNAG 1746 >gi|148683989|gb|EDL15936.1| leucine rich repeat containing 59, isoform CRA_b [Mus musculus] Length = 376 Score = 41.1 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%) Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R+RR + + + E + + Sbjct: 221 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 280 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E + S P K TR W Sbjct: 281 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 314 >gi|119570347|gb|EAW49962.1| ligand-dependent corepressor, isoform CRA_b [Homo sapiens] Length = 1557 Score = 41.1 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 34/163 (20%), Gaps = 1/163 (0%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++ + + + P + Sbjct: 1391 PKAEVQSKRKRTEGSSPPDSKNKGPTVKASKEKHADGATKTPAAKRPAARDRSSQPPKKT 1450 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 S + V ++ + P+ + SI + + + + Sbjct: 1451 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGAGESS-SRPQK 1509 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + P TPE ++ K +R+ Sbjct: 1510 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDCSHSKRR 1552 >gi|195574499|ref|XP_002105226.1| GD21371 [Drosophila simulans] gi|194201153|gb|EDX14729.1| GD21371 [Drosophila simulans] Length = 1003 Score = 41.1 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 38/159 (23%), Gaps = 4/159 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + E +D S + E + Sbjct: 628 DSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDSRDRKREASPNWKREDSPGR 687 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN----LLENGAH 684 +++ R+R + D S +DS ++ SD + E+ Sbjct: 688 KRKDSANRKREDSQDKKIQDSKRQEYSAGKKREDSPSKKLKDSDRKRQDSPVKRQESPGR 747 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ ES++ + K + R+ Sbjct: 748 KRQDSPGRKRDSPDKRAAESADKKQQDSLAKRQDSPGRR 786 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 10/142 (7%), Positives = 38/142 (26%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 ++ + ++ + QD+ ++ ++R R+R + Sbjct: 609 SPSGDRRRQQRSRSQNRRQDSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDS 668 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 D + + D + + ++ ++ P + Sbjct: 669 RDRKREASPNWKREDSPGRKRKDSANRKREDSQDKKIQDSKRQEYSAGKKREDSPSKKLK 728 Query: 702 MESSNSSSDPIVKKTRWWKRRK 723 P+ ++ ++R+ Sbjct: 729 DSDRKRQDSPVKRQESPGRKRQ 750 >gi|195469729|ref|XP_002099789.1| GE16687 [Drosophila yakuba] gi|194187313|gb|EDX00897.1| GE16687 [Drosophila yakuba] Length = 5096 Score = 41.1 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 48/160 (30%), Gaps = 9/160 (5%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK + K S+ S ++ +DEA +S + ++ + Sbjct: 2213 EKSKEESRRESIVEKSALASKEASRPASVAESSKDEAEKSKEESRRESVADKSPLASKEA 2272 Query: 626 GV---------IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + RR + A + S +V + S D + + + Sbjct: 2273 SRPASVAESVKDEAEKSKEESRRESIVEKSALASKEASRPASVAESSKDEAEKSKEESRR 2332 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + + ++ + + E+ S + + T Sbjct: 2333 ESVADKSPLASKEASRPASVAESVKDEAEKSREESRREST 2372 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 37/160 (23%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 E++ IE + S+ S +++ +DE + + + Sbjct: 1725 EVSRPESVIESMKDESEKPGSHRDSPLASKEASRPESVVESVKDEPIKSTEELRRESVAE 1784 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 R + R A + V Q + P + Sbjct: 1785 SVKADSTKDEKSRPASKDISRPDSAAESVLDAVQKSAERSQPESATASRDVSRPESVAES 1844 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + +S P+ + S ++ Sbjct: 1845 EKDDTDKPESVVESVRPSGVISKPDESAKPESRRESSTES 1884 >gi|238505214|ref|XP_002383836.1| transcriptional regulator (Cti6), putative [Aspergillus flavus NRRL3357] gi|83773510|dbj|BAE63637.1| unnamed protein product [Aspergillus oryzae] gi|220689950|gb|EED46300.1| transcriptional regulator (Cti6), putative [Aspergillus flavus NRRL3357] Length = 611 Score = 41.1 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 4/161 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624 E+ P + S S + ++ + + ++ + +E Sbjct: 270 EETKPASEEIAARRGKRSRSDSEAHKQAAKRQRTSSPSPGATSNKQSNPVSQPASEDEKA 329 Query: 625 ---TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 T R++R R + ++ N D ++H + Sbjct: 330 KAATNGTRRQRAASRSQHNKETKDVEEPEAEQPDATNRRKGRSDRRKGDGTDSDHEAVSP 389 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T P +T S K R RR Sbjct: 390 TKTVATNLEPPQPSPDTTAPAPEPAPSRPSTRKSGRPPARR 430 >gi|289617053|emb|CBI56121.1| unnamed protein product [Sordaria macrospora] Length = 11106 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 41/173 (23%), Gaps = 18/173 (10%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + V ++ + +D + + P+ S + EE Sbjct: 857 EQYERRVREAREMQYKEERRMHDARYRAERDNMVVDIEPRHRSTSRQSRDESPEEKRSDK 916 Query: 629 RKRRRRRRRRRPAT-------------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 K R RP D V S+ +S + P Sbjct: 917 GKEIDREEHHRPKPQPVTIINERDVPKDEPKPKVEEPTRSVPGEKRESMGDTLNPEPKKP 976 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNS-----SSDPIVKKTRWWKRRK 723 T + E E + +++ KK + + RK Sbjct: 977 SKEERRAKRAETRRLLAEMQKELELEKERARKLAELEAAEQQQKKPKEEEPRK 1029 >gi|95007074|emb|CAJ20290.1| hyothetical protein [Toxoplasma gondii RH] Length = 1821 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 27/256 (10%), Positives = 66/256 (25%), Gaps = 30/256 (11%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E +R+ ++ E G G ++++ I E + + + Sbjct: 1368 EAARKGTETTEGEGLGGDREDNCGEGQLKAKE-----INEGDREKAERTEIGDCGEAGGA 1422 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 + + +KR E E + I K + + Sbjct: 1423 GPMSDVPAEKRRGRDEKEEK------------------QIRKLPLETRRDPEERTMEAQR 1464 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR-------RR 638 S ++ E + P E+L+ + E K +++ R Sbjct: 1465 ALQSDNQKRELREEKRRSSEKPSREALKGEEGETGREGEQDDTPKEQKKGNEELVAGVRG 1524 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + D+ + + + E + + +H T + + Sbjct: 1525 KGVEDNPAEEGEASRKVTEKQRSINLGREKEGQTLLAQKQKKRRSHQATHSKSLDSEAAH 1584 Query: 699 TPEMESSNSSSDPIVK 714 ++S + K Sbjct: 1585 EERRDTSGCEATAAKK 1600 >gi|242794820|ref|XP_002482454.1| RNA polymerase II transcription elongation factor (Ctr9), putative [Talaromyces stipitatus ATCC 10500] gi|218719042|gb|EED18462.1| RNA polymerase II transcription elongation factor (Ctr9), putative [Talaromyces stipitatus ATCC 10500] Length = 1198 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 7/179 (3%) Query: 533 NQKRATI-VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 N R TI + E L + + + ++ K Sbjct: 937 NMGRNTISKQLERSIQNQKEYEDKNALKLQQARAAREAELKRREEEVRKAQELENERK-R 995 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA-----TDHHD 646 + E + ++ E+ + +E +T R++R+R+ + D Sbjct: 996 RLAEERQRIIEETQRLAAKRAEEQRAREAAELTTDSETGERQKRKRKASSGRRRKRRDED 1055 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 GVVSD SI D P + + S E+E+ Sbjct: 1056 DGVVSDGRSISVARSDDDGTAPAPKRRRRLERRGGAKEKLGKYKSSELVVDSDEELENE 1114 >gi|119578297|gb|EAW57893.1| splicing factor, arginine/serine-rich 2, interacting protein, isoform CRA_b [Homo sapiens] Length = 1398 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910 Query: 720 KRRK 723 R + Sbjct: 911 SRER 914 >gi|126436905|ref|YP_001072596.1| hypothetical protein Mjls_4334 [Mycobacterium sp. JLS] gi|126236705|gb|ABO00106.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length = 392 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 2/132 (1%) Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 I + + +RR R + R A + + Sbjct: 250 PSRSRHNRPPETEIIEPVVDRPRRSRSTPRTPESPEPRRRSRTQAPREAREPRETRDARK 309 Query: 653 VSSIQNVID--DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + + D + E S + T N S P+S ++ Sbjct: 310 LPPRERRSSSYDRPERRTERSRRLDDYEPYEPLEPHTRNGSSSHHPISRVRYRGADEDDQ 369 Query: 711 PIVKKTRWWKRR 722 ++R RR Sbjct: 370 RSEYRSRPRARR 381 >gi|222824189|ref|YP_002575763.1| 30S ribosomal protein S1 [Campylobacter lari RM2100] gi|222539411|gb|ACM64512.1| 30S ribosomal protein S1 [Campylobacter lari RM2100] Length = 517 Score = 41.1 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 4/190 (2%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98 G+ V+ +EP AFVD G + GFL EI D + + + + + + Sbjct: 286 VGDTIKVTVSNIEPY--GAFVDLGNDIEGFLHISEISWD--KNAKNPKDYISEGQELDVE 341 Query: 99 DSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPE 158 E A + + ++ + + S+ S N G Sbjct: 342 VIEINAKERRLRVSLKNLLAKPFDEFLKSHKVGDVVKGSVTSVTNFGAFVKIANLEGLLH 401 Query: 159 DVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGET 218 + + R +++ K ++ V+I+K ++ N+ +++T V + Sbjct: 402 NEDASWNRNDKCKDMYKVGDVIEVKIIKLDKENQKISLSTKELQKSPVQVYAQKHQVNDI 461 Query: 219 ISRKITNPVD 228 IS KI + D Sbjct: 462 ISGKIRDIKD 471 >gi|255574021|ref|XP_002527928.1| hydrolase, acting on ester bonds, putative [Ricinus communis] gi|223532703|gb|EEF34485.1| hydrolase, acting on ester bonds, putative [Ricinus communis] Length = 960 Score = 41.1 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 8/166 (4%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS-- 621 ++ Q + V +N + + +D ++ Sbjct: 744 KVKSDEDGQHESKRSYSVKDIKDTELNRENEKGDGNRRKQDETHSRKEKKDDRNGSKEKV 803 Query: 622 -EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--- 677 E+ K + R+RP D + + N +D D + Sbjct: 804 KEQGDKTGGKAKESELRKRPHLDVKEDRRELEKLHRSNAKEDDNRKRRRTKDKEDDRARH 863 Query: 678 --LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ H + S ++ + +SS+ +SD +KT KR Sbjct: 864 KPTNDSSKHKRRRSSSTSSRGRNSRDKDSSDEASDGSKRKTHSRKR 909 >gi|303232061|ref|ZP_07318764.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella atypica ACS-049-V-Sch6] gi|302513167|gb|EFL55206.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella atypica ACS-049-V-Sch6] Length = 632 Score = 41.1 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Query: 28 LDFESEHK--KQIKGNI-----YLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77 L+ E + K + +K NI Y V ++ P AFVD GG G L +I Sbjct: 447 LEVERQAKLAEALK-NINVGENYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499 >gi|301622634|ref|XP_002940630.1| PREDICTED: hypothetical protein LOC100494134 [Xenopus (Silurana) tropicalis] Length = 914 Score = 41.1 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 5/158 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES-TGV 627 V + + P + L P S + + E+ + Sbjct: 470 EKVLRRLPGRLVTVVQERPPVARRQNRPKGDKGPLSPGDPQNSPPPSLQSDDTSEAGSPP 529 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG-- 685 +++R R +P + A V+ SS+ V D +E T + L + Sbjct: 530 PKRKRGRP--PKPKIESSPAQAVATGSSLSEVASDLDVSLLEKHGDTGLSPLGPSSELAP 587 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 T+ V+ PV ++ S S+ + K+ R +K Sbjct: 588 STKAAVVAGSPVPCTKLNSEIESAPSVEKRKRGRPPKK 625 >gi|303229902|ref|ZP_07316678.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella atypica ACS-134-V-Col7a] gi|302515458|gb|EFL57424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella atypica ACS-134-V-Col7a] Length = 632 Score = 41.1 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Query: 28 LDFESEHK--KQIKGNI-----YLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77 L+ E + K + +K NI Y V ++ P AFVD GG G L +I Sbjct: 447 LEVERQAKLAEALK-NINVGENYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499 >gi|259485856|tpe|CBF83234.1| TPA: Mis12-Mtw1 family protein (AFU_orthologue; AFUA_3G13950) [Aspergillus nidulans FGSC A4] Length = 596 Score = 41.1 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 17/168 (10%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + K + ++ P E Q P + ED D++ ++ + Sbjct: 85 SRITSKKQKASTSTEQPDLPAPEEPTPQPSPRRGRPPKKRAEDRSDDVARQKKASEGTGK 144 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG------ 685 R+ R + + A + + Q+ + + +E Sbjct: 145 RQTRGKTKNALEPEPEPKPHPHPNPQSERSERSTRKRGEEEQVQQVSVEKKRKKGRPSKS 204 Query: 686 ---------FTENYDVSIPPVSTPEMESSNSSSDPIV--KKTRWWKRR 722 E ++ P ++ + + KK+ RR Sbjct: 205 QEEQRNGFVSPEQPQAGTATIALPVADTPVIQRNKEMRGKKSGKGSRR 252 >gi|313893418|ref|ZP_07826990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp. oral taxon 158 str. F0412] gi|313442059|gb|EFR60479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp. oral taxon 158 str. F0412] Length = 632 Score = 41.1 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Query: 28 LDFESEHK--KQIKGNI-----YLAKVTRVEPSLQAAFVDYGG-NRHGFLPFLEIHPD 77 L+ E + K + +K NI Y V ++ P AFVD GG G L +I Sbjct: 447 LEVERQAKLAEALK-NINVGENYKGIVRKIMPY--GAFVDIGGIE--GLLHISDISWQ 499 >gi|109127941|ref|XP_001097618.1| PREDICTED: retinoblastoma-binding protein 6 isoform 5 [Macaca mulatta] Length = 1791 Score = 41.1 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E+S Sbjct: 1001 SEKDKRERDKPKTKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKIDGEREKSPRSEPP 1057 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1058 LKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPLKEEKVKKDYSKDV 1117 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1118 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1149 >gi|15602624|ref|NP_245696.1| translation initiation factor IF-2 [Pasteurella multocida subsp. multocida str. Pm70] gi|13431559|sp|P57873|IF2_PASMU RecName: Full=Translation initiation factor IF-2 gi|12721057|gb|AAK02843.1| InfB [Pasteurella multocida subsp. multocida str. Pm70] Length = 833 Score = 41.1 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 14/151 (9%), Positives = 34/151 (22%), Gaps = 3/151 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---NIVSEE 623 + + ++ + E E ++E+ ED D Sbjct: 118 RAEEAELRRKADELARQKAEELARKAAEEAKRYAELSEEDAENENSEDYADYHLTSTYAR 177 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 RR+ R R A +S + + + G+ Sbjct: 178 EAEDEEARRKENRNRGGKNKVAKAKKGGREDESSKTERESNRRNQKDGKMGKGKHAKKGS 237 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + + ++ K Sbjct: 238 ALQQAFTKPAQAVNRDVVIGETITVAELANK 268 >gi|237835003|ref|XP_002366799.1| trichohyalin, putative [Toxoplasma gondii ME49] gi|211964463|gb|EEA99658.1| trichohyalin, putative [Toxoplasma gondii ME49] Length = 2238 Score = 41.1 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 21/206 (10%), Positives = 49/206 (23%), Gaps = 3/206 (1%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 EE + A V + N+ + E E G + +E K Sbjct: 511 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEK--GKQEAIEKAVEEERKKME 568 Query: 565 IEKGS-PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 E+ K + +A ++ ++E + E + EE Sbjct: 569 QEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEE 628 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R ++ R + + + + + E Sbjct: 629 ERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREQWQKRQEEREKENEQDG 688 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSS 709 + + T ++ Sbjct: 689 EEMKQKLQRARDENETARKRATELER 714 Score = 38.0 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 59/227 (25%), Gaps = 8/227 (3%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 EE + A V + N+ + E E +I + E Sbjct: 379 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEKAVEEERKKMEQE 438 Query: 565 IEK----GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 E+ + + + + ++ E + A K E++E Sbjct: 439 REEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEER 498 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD----SFDMYMEPSDITNH 676 + ++ R + + + V + ++ ++ +M + Sbjct: 499 KKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEK 558 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E E + + + ++ + + R+ Sbjct: 559 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQERE 605 >gi|145235910|ref|XP_001390603.1| pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 [Aspergillus niger CBS 513.88] gi|134075050|emb|CAK44849.1| unnamed protein product [Aspergillus niger] Length = 1128 Score = 41.1 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 2/158 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ V + + P ++ V + + + + ES Sbjct: 82 ERSDAVSSKKKYRLLEMEEDDVPDARGSLGPVNVEAERDRRRRRDKDRSNGRSSKDGESG 141 Query: 626 GVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R+R R R + DD + P D + + G Sbjct: 142 RSRWEKDESRKRDRSREEESRDRPRTKKVRRRNADDFDDRWGDEEIPEDELYEDDEQAGE 201 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + S +++ DP KK + KR Sbjct: 202 FEESPSKRSRLEDGSASPRSNASEELDPETKKEQDRKR 239 >gi|123974628|ref|XP_001313915.1| hypothetical protein [Trichomonas vaginalis G3] gi|121895859|gb|EAY01029.1| hypothetical protein TVAG_295630 [Trichomonas vaginalis G3] Length = 1035 Score = 41.1 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 44/190 (23%), Gaps = 13/190 (6%) Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 + + + L +K + + + ++ P + + + + Sbjct: 786 HQHKSPLCIEATNNLEIAD---DKNRFAKTEIKAVSLLKLNNSPPILEISPIREMEKPLV 842 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 K + R+RRRR D D + + I+++ Sbjct: 843 TNSHKHHHHAKTLAGDEDTSPATLQPDRQRRRRSVGKTIDGSDNKIEQKKTPSPKKIEEN 902 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN----------SSSDPIV 713 D + + P E + P Sbjct: 903 EDKEPQTLQPERKRRRRKVSVELQNFILKEEPKSKKAESSEEEPLFVPPIYLQNDEKPPE 962 Query: 714 KKTRWWKRRK 723 K R K RK Sbjct: 963 KLRRVRKHRK 972 >gi|302663873|ref|XP_003023574.1| hypothetical protein TRV_02321 [Trichophyton verrucosum HKI 0517] gi|291187577|gb|EFE42956.1| hypothetical protein TRV_02321 [Trichophyton verrucosum HKI 0517] Length = 812 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 13/178 (7%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 +++ + + + K V T + I + P Sbjct: 3 MTVLIENDEKAGQEN---AKREEVGIGAPTPRMKVYIHKMKMMYLMIGDIEVGRENTGRP 59 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS--------SIQNV 659 + +S E I+ ++ES K+R R R R H + + Sbjct: 60 EIDSTE-IEAGHKAKESPATSPKKRDRERDREGHNRHRPRRDSTADEGGDRRLRDRRRRG 118 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST-PEMESSNSSSDPIVKKT 716 D + D H E + N + +++ N +D +KK Sbjct: 119 YDTDQEREHHDRDTRRHGRREKHTSNDSANSATVLLSSDALAQLDQLNRKADEDMKKK 176 >gi|195136017|ref|XP_002012391.1| GI21403 [Drosophila mojavensis] gi|193907769|gb|EDW06636.1| GI21403 [Drosophila mojavensis] Length = 376 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 61/234 (26%), Gaps = 25/234 (10%) Query: 489 GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV 548 G GY R E + + + ++ L V Sbjct: 35 GTGYQRRGDPRMGRDYYRPREERPPPKFKHTVHRSSINIAERL-----DGCVMLMKVEFT 89 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 +I V I + + E +P K + Q+P ++ V + + Sbjct: 90 TIYVQIPQSRGAQPYVEEPQTPSTPPSMPVPKECAALQSPDEEEETREVQSPDEEEETRE 149 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 +S ++ ++ + + + +Q+ + Sbjct: 150 VQSPDEEEETREVQSPVEEE-----------ETREVQSPDEEEETREVQSPEGERRQWGA 198 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E S+ + + + + ++ ++ D + WW RR Sbjct: 199 ESSEDQSPSRGQGDGRERSPFAAP---------LDPETAARDEGRRSPSWWTRR 243 >gi|183979254|dbj|BAG30788.1| similar to CG13676-PA [Papilio xuthus] Length = 1074 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 32/141 (22%), Gaps = 2/141 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G P + + + P E E P + + E+ Sbjct: 256 QGRPARPAKRRPYDEYDEKYEPRPRPRDESEDYAEERRPYDRRPGKRPYLERRPYEDEDR 315 Query: 627 VIRKRR--RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + +R + RR D + N + + G Sbjct: 316 MTERRPNYKGGRRPGRPRDTEEDQYKPVDEDRPRAAPRDQKRNEYRPRDKNRPIDDMGDR 375 Query: 685 GFTENYDVSIPPVSTPEMESS 705 + +P P ES Sbjct: 376 AQEDESSRDVPREDRPRSESR 396 >gi|323507745|emb|CBQ67616.1| conserved hypothetical protein [Sporisorium reilianum] Length = 965 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 20/232 (8%), Positives = 58/232 (25%), Gaps = 20/232 (8%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 + + R + + A + + L ++R +++ + +S Sbjct: 271 SMLPAEFLDKLAERRSDRDAARAQAQQLFSN--------LKEEERQALLDKSTKSKISAT 322 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 V + K + + S I+ D ++ + Sbjct: 323 VAVDKPAPS----------SSTPSKVKAKANAAGTSASQPIAIDDDLDDGSVADTEHDKP 372 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + S+ + +R A + S + ++ E Sbjct: 373 APSTPISHKRKSSSSTSTPQPTAKRSAAAAEALTPSTSSSPKEKR--KAKEPAELSPEKQ 430 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E + + + + KK + K+R+ Sbjct: 431 KEKDEKEAAKAERLKAKEAKRLEREAKELEKQKAKEAKEAEQKKAQEQKKRQ 482 >gi|317151598|ref|XP_001824770.2| transcriptional regulator (Cti6) [Aspergillus oryzae RIB40] Length = 603 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 4/161 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624 E+ P + S S + ++ + + ++ + +E Sbjct: 270 EETKPASEEIAARRGKRSRSDSEAHKQAAKRQRTSSPSPGATSNKQSNPVSQPASEDEKA 329 Query: 625 ---TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 T R++R R + ++ N D ++H + Sbjct: 330 KAATNGTRRQRAASRSQHNKETKDVEEPEAEQPDATNRRKGRSDRRKGDGTDSDHEAVSP 389 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T P +T S K R RR Sbjct: 390 TKTVATNLEPPQPSPDTTAPAPEPAPSRPSTRKSGRPPARR 430 >gi|296420719|ref|XP_002839916.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636123|emb|CAZ84107.1| unnamed protein product [Tuber melanosporum] Length = 807 Score = 41.1 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 11/114 (9%), Positives = 33/114 (28%), Gaps = 3/114 (2%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 QA+ S+ + S + E DE P ++ + ++ + +++ Sbjct: 389 QAVTPQPENPDSEKRPASPEAGSES---DEPPKEPPLNKEKKPVRAIKEAPPRPESSKRK 445 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +R + ++ A + + + + D + Sbjct: 446 PKRTHSKTETSEERAATREKRAEKRRKRLAEKDEEPEIKLDTNTEEINTGAVEK 499 >gi|332071271|gb|EGI81766.1| choline binding protein A [Streptococcus pneumoniae GA17545] Length = 529 Score = 41.1 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++ + + V + L N K + E Sbjct: 3 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 61 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + + E+ P + D E LP P + Sbjct: 62 KLKEAVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 121 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + K ++ RR T+ + + S V + ++ E + Sbjct: 122 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 181 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + N A E+ + + + KK +RK Sbjct: 182 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 223 >gi|302500916|ref|XP_003012451.1| origin recognition complex subunit Orc4, putative [Arthroderma benhamiae CBS 112371] gi|291176009|gb|EFE31811.1| origin recognition complex subunit Orc4, putative [Arthroderma benhamiae CBS 112371] Length = 697 Score = 41.1 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 40/155 (25%), Gaps = 3/155 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 P + + + + + + +P + ES + V+E+ Sbjct: 5 SRPSKRRRVSNPDLDPEQERRESPSPTRTRKTRKNNIPATEPESTANAGTEEVAEKKDDE 64 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + RR R T + + + V ++ + Sbjct: 65 APSQSTRRSARIKVTGNSVVSTSAGPPRPRVVEEEDTQNRKRSRKTKTSIAGSSSTKKLA 124 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S P + ++ +++ KK R Sbjct: 125 RK---SSKPTAATTTTTTTTTTGRKNKKEDKQDER 156 >gi|154417657|ref|XP_001581848.1| hypothetical protein [Trichomonas vaginalis G3] gi|121916079|gb|EAY20862.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 919 Score = 41.1 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 12/210 (5%), Positives = 50/210 (23%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + E ++ + +K+ E + + V + Sbjct: 493 EKKEETQAVEEKKEETPAVEEKKEETPAVEEKKEETPAVEEKKEETPAVEEKKKEETPAV 552 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +K A+ + + + E ++ + K E +++ Sbjct: 553 EEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETP 612 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + ++ ++ T + + +++ +++ + + + E Sbjct: 613 AVEEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEET 672 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + E Sbjct: 673 PAQEKKEETPATEEKKEEESPVAEEKKEEE 702 Score = 37.6 bits (85), Expect = 8.4, Method: Composition-based stats. Identities = 13/188 (6%), Positives = 42/188 (22%), Gaps = 4/188 (2%) Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 +K+ E + + V + +K + + Sbjct: 574 EEKKEETPVEEKKEEETPAVEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPA 633 Query: 593 NIECVWQDEALLPIPKSESL----EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 E ++ + K E+ + + + ++ + ++ ++ Sbjct: 634 VEEKKKEETPAVEEKKEETPAVEEKKEETPVEEKKEEETPAQEKKEETPATEEKKEEESP 693 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 V + + + + P+ E +E Sbjct: 694 VAEEKKEEETPVAEEKKEEETPAVEEKKEEETPVEEKKEEETPAEEKKEEETPVEEKKEE 753 Query: 709 SDPIVKKT 716 P +K Sbjct: 754 ETPAEEKK 761 >gi|170585502|ref|XP_001897522.1| Zinc knuckle family protein [Brugia malayi] gi|158595069|gb|EDP33644.1| Zinc knuckle family protein [Brugia malayi] Length = 1366 Score = 41.1 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 36/159 (22%), Gaps = 8/159 (5%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + DE S SL D E + RR Sbjct: 1029 EQKSEEKAIVESKPRDDQEGCGSGKKADEKEGRSGDSSSLPKGNDKKNVREHLKHEKDRR 1088 Query: 633 RR--RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF---- 686 R+ R+R + + + D + ++ + Sbjct: 1089 RKHDLSRKREESKDDSRITRKRNDERETKRSEEKDSRKQGDKFRKNDRKDEKLENKRWDN 1148 Query: 687 --TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P + E S + ++RK Sbjct: 1149 REGKTKGGEREPKRSGNAEKPESEMKKESRHKEHGEKRK 1187 >gi|195021736|ref|XP_001985452.1| GH17069 [Drosophila grimshawi] gi|193898934|gb|EDV97800.1| GH17069 [Drosophila grimshawi] Length = 1421 Score = 41.1 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 22/200 (11%), Positives = 53/200 (26%), Gaps = 23/200 (11%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + E V+ + + + I +A S+ Q V Sbjct: 1035 EKLENEQQVNTKISAEMPEQPEDIVITNVPKKRAPRKATQMQESELQNKRKRSRHSTVKA 1094 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRK--------------RRRRRR----RRRPA 641 E S + Q E + +R+R R + + Sbjct: 1095 KEEDNESESSITANPAQTESAETEKESTAIRADNVETKDAPGSHNKRKRPRHSDVKEKDG 1154 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 T ++ + N +++ + ME + + N + D + Sbjct: 1155 TTESESTETLKGETPANGKNETESLIMENTSLPTENTKKEEVVSTAVELD-----NIEMK 1209 Query: 702 MESSNSSSDPIVKKTRWWKR 721 ES + + + ++ ++ Sbjct: 1210 DESESQNKRKRPRHSKVQEK 1229 >gi|326470974|gb|EGD94983.1| hypothetical protein TESG_02478 [Trichophyton tonsurans CBS 112818] Length = 903 Score = 41.1 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 16/179 (8%), Positives = 38/179 (21%), Gaps = 9/179 (5%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603 E+ ++ + + Q + VW++ Sbjct: 449 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEEPQPEEQNSKQRFPSKDVWEEPPQ 508 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 + + R D D+S ++ Sbjct: 509 SQQLTTAVEAPADSEKSEKPEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPMKTQATSP 568 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ PS + + P T E+++ ++ P K R Sbjct: 569 TELKKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDANPPAPKSKPALPPR 627 >gi|321457979|gb|EFX69055.1| hypothetical protein DAPPUDRAFT_114043 [Daphnia pulex] Length = 726 Score = 41.1 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 1/156 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + G S S + + + S E + + S T Sbjct: 367 RSSDRDKPKDRGTSKTSSGSDRSGPEENRRADKKRVNTSVDSVRSSEQRRTSDKSRSPTC 426 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +R R + D +V+ + + +S E + + ++ ++G Sbjct: 427 ERKPLLKRSPPRSVSNDRDSRKLVTPSLTETERDRLESRKRKFETAPDQDSSVKKDGKIR 486 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + PPV E + V + +R Sbjct: 487 LRTEINRKTPPVQLKRREEKLTKKPEAVVEQIQVRR 522 >gi|298710353|emb|CBJ31971.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1080 Score = 41.1 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 38/160 (23%), Gaps = 1/160 (0%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E P +A + + + L ++ E + Sbjct: 211 LEPAVPDEATTPDLPRKRGRPRKTPLEPAAPDEATTLDLPRKRGRPRKAPLEPAAPDEAT 270 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSD-VSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 T + ++R R R+ D D + T + G Sbjct: 271 TPDLPRKRGRPRKTPLEPAAPDEATTPDLPRKRGRPRKTPLEPAAPDKATTPDLPCKRGR 330 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 T +TP+ + + S+ R+ Sbjct: 331 PRKTPLEPAVADEATTPDQQRATPSNSAPPSPVGTPTPRQ 370 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 5/149 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + N + + + L ++ + E +T + Sbjct: 165 AAADQAANPDLRKRGRPKKTQLEPAASDESTTPDLPRKRGRPRKTPLEPAVPDEATTPDL 224 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++R R R+ D D+ + + P + T +L Sbjct: 225 PRKRGRPRKTPLEPAAPDEATTLDLPRKRGRPRKAPLEPAAPDEATTPDL----PRKRGR 280 Query: 689 NYDVSIPPVSTPEMESSN-SSSDPIVKKT 716 + P + E + + +KT Sbjct: 281 PRKTPLEPAAPDEATTPDLPRKRGRPRKT 309 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 36/168 (21%), Gaps = 8/168 (4%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 +E + D + D+A P + Sbjct: 121 RPKPAPQPSSAELEAPPEINTPATPERVPPPDKTGRPRKTPLPPAAADQAANPDLRKRGR 180 Query: 613 EDIQDNIVSEESTGVIR---KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + ++R R R+ D D+ + + Sbjct: 181 PKKTQLEPAASDESTTPDLPRKRGRPRKTPLEPAVPDEATTPDLPRKRGRPRKTPLEPAA 240 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN-SSSDPIVKKT 716 P + T +L + P + E + + +KT Sbjct: 241 PDEATTLDL----PRKRGRPRKAPLEPAAPDEATTPDLPRKRGRPRKT 284 Score = 37.6 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 41/154 (26%), Gaps = 5/154 (3%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E + ++ + + + + L ++ E Sbjct: 185 QLEPAASDESTTPDLPRKRGRPRKTPLEPAVPDEATTPDLPRKRGRPRKTPLEPAAPDEA 244 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +T + ++R R R+ D D+ + + P + T +L Sbjct: 245 TTLDLPRKRGRPRKAPLEPAAPDEATTPDLPRKRGRPRKTPLEPAAPDEATTPDL----P 300 Query: 684 HGFTENYDVSIPPVSTPEMESSN-SSSDPIVKKT 716 + P + + + + +KT Sbjct: 301 RKRGRPRKTPLEPAAPDKATTPDLPCKRGRPRKT 334 >gi|295100575|emb|CBK98120.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 482 Score = 41.1 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 20/196 (10%), Positives = 49/196 (25%), Gaps = 12/196 (6%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 G + S A + + E+ + +++ + + E R Sbjct: 8 TGPAENISPEAAEPITTPEQAAASEPQQEQTGPAIPESGDVVVSFDKINELMAEKRQNAR 67 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 V E +A ++++ + ++A K Sbjct: 68 AEVE----------KAETPETPEAAAFGETPQPANTEEAKKPRRGRPPKAEKAATENQKV 117 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV--IDDSFDMY 667 E + + K + +R + +D + Q+ + + Sbjct: 118 EKSAGARKGRPPKADKAAPDKPKPSKRDKVSRSDGKAPDAKEPIKPAQDTAPKETATAEQ 177 Query: 668 MEPSDITNHNLLENGA 683 P T +E G Sbjct: 178 TAPEPTTPPRPVEEGK 193 >gi|291409855|ref|XP_002721207.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like [Oryctolagus cuniculus] Length = 967 Score = 41.1 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 39/147 (26%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P +A + S +A S K + +++S E + ++ Sbjct: 668 PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEA 727 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 K + + A S + V +++ S + E Sbjct: 728 KSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKETPKKEE 787 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 V PP E + + KK Sbjct: 788 VKVKEPPKKVEETAPAPPKVEKDSKKD 814 >gi|194385344|dbj|BAG65049.1| unnamed protein product [Homo sapiens] Length = 1062 Score = 41.1 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 4/138 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 921 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 980 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ +R+R P G V + + +E Sbjct: 981 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 1040 Query: 685 GFTENYDVSIPPVSTPEM 702 P + P+ Sbjct: 1041 PKRRRAADVEPSLPEPKR 1058 >gi|195438675|ref|XP_002067258.1| GK16278 [Drosophila willistoni] gi|194163343|gb|EDW78244.1| GK16278 [Drosophila willistoni] Length = 5640 Score = 41.1 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 2/147 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + E V + ES E + E T + Sbjct: 4087 KDETEIPKTTPAEKSKEPSRPESVAESVKSENVKEEECPLESKEISRSGSAVESITVGSK 4146 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 ++ RR +VS ++V++ D +P I + E T + Sbjct: 4147 EQSRRESINEACKQEDAKDAPMEVSRPESVLESIKDKSEKPESIRDEKSQETSRRESTSD 4206 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 PP+ +P++ + S++D K++ Sbjct: 4207 IIH--PPILSPQLSVAASATDKQSKES 4231 >gi|117676384|ref|NP_004710.2| protein SCAF11 [Homo sapiens] gi|251757337|sp|Q99590|SCAFB_HUMAN RecName: Full=Protein SCAF11; AltName: Full=CTD-associated SR protein 11; AltName: Full=Renal carcinoma antigen NY-REN-40; AltName: Full=SC35-interacting protein 1; AltName: Full=SR-related and CTD-associated factor 11; AltName: Full=SRSF2-interacting protein; AltName: Full=Serine/arginine-rich splicing factor 2-interacting protein; AltName: Full=Splicing factor, arginine/serine-rich 2-interacting protein; AltName: Full=Splicing regulatory protein 129; Short=SRrp129 gi|119578298|gb|EAW57894.1| splicing factor, arginine/serine-rich 2, interacting protein, isoform CRA_c [Homo sapiens] gi|146327184|gb|AAI41553.1| Splicing factor, arginine/serine-rich 2, interacting protein [synthetic construct] Length = 1463 Score = 41.1 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910 Query: 720 KRRK 723 R + Sbjct: 911 SRER 914 >gi|297733637|emb|CBI14884.3| unnamed protein product [Vitis vinifera] Length = 949 Score = 41.1 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 1/109 (0%) Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE-STGVIRKRRRRRRRRRPATDHHDAG 648 K+ E +D K + + + S + T ++ R+R+ Sbjct: 685 AQKDPEEQEEDRNFHVWVKKPDEKPERKSESSRKAETSSAPRKSGRKRKMMVENGSTKKA 744 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 + +S + D + LE G + P Sbjct: 745 NRPEREDPTPRRRNSCEQSAREFDSYVEDELEGGPSTRLRRRNPKPPKE 793 >gi|302406130|ref|XP_003000901.1| DNA ligase [Verticillium albo-atrum VaMs.102] gi|261360159|gb|EEY22587.1| DNA ligase [Verticillium albo-atrum VaMs.102] Length = 893 Score = 41.1 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 37/153 (24%), Gaps = 12/153 (7%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 E+ P D ++ S + ++ VS + Sbjct: 40 KAEEDEVANKENGAASAGVKGEDGPKKDSKKRAHADED----QDGKSSNKTVKTEEVSAD 95 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +R RR R R D + P + + + Sbjct: 96 EDDAPVVKRARRNRNRIEDDEDEGMEEVPAPKP--------SPKTSPKKSKRASKSRSPS 147 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + E+ES S+ D + ++ Sbjct: 148 PKRAKASPTPVQASEDSEVESVGSAEDDLDGES 180 >gi|87299628|ref|NP_683692.2| biorientation of chromosomes in cell division protein 1-like [Homo sapiens] gi|158931124|sp|Q8NFC6|BOD1L_HUMAN RecName: Full=Biorientation of chromosomes in cell division protein 1-like; AltName: Full=Protein FAM44A gi|119613122|gb|EAW92716.1| family with sequence similarity 44, member A [Homo sapiens] gi|225000196|gb|AAI72451.1| Biorientation of chromosomes in cell division 1-like [synthetic construct] Length = 3051 Score = 41.1 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 28/252 (11%), Positives = 69/252 (27%), Gaps = 23/252 (9%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +G+ ++ + S + + A I H+ + ++R + +S Sbjct: 2720 SGFRTNEEIHSESYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMPKRKRKQHYLS 2779 Query: 550 INVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIEC 596 IE + K S++ + + E Sbjct: 2780 SEDEPDDNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPKTSSETNSTTSRVMEEK 2839 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHD 646 + K E +D E+ +I+++R R R + TD Sbjct: 2840 DEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKMKDDSKTDTGI 2899 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 V SS + + + + E +++ ++ + + S+ Sbjct: 2900 VTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVTSVRRRGRKPKRSLTVSD 2959 Query: 707 SSSDPIVKKTRW 718 + ++ R Sbjct: 2960 DAESSEPERKRQ 2971 >gi|157866569|ref|XP_001687676.1| hypothetical protein [Leishmania major strain Friedlin] gi|68125290|emb|CAJ03038.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 1957 Score = 41.1 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 2/125 (1%) Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR--RPATD 643 + + + +D E+ + +EE K+ RRRRR + Sbjct: 1793 PSSDREDGDKDADEDHPRRRTESRNGDENTDEASRAEEQHRRKAKKTGRRRRRQEQTLQQ 1852 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 H VS S + + P + + +PP + Sbjct: 1853 HQQRKQVSSRSPLHSHEPSKDGASCSPEVRAGRGRPGSVDSVSSRIGSPGLPPRPSRAEM 1912 Query: 704 SSNSS 708 S Sbjct: 1913 EVKGS 1917 >gi|74190142|dbj|BAE37196.1| unnamed protein product [Mus musculus] Length = 493 Score = 41.1 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 32/158 (20%), Gaps = 1/158 (0%) Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 L I + + + H + + S S Sbjct: 146 LLHPHLRIARMAEQSGDKSHSHTPSHRAGRSRSPATKRGQSRSRTPTKRGHSRSPSPQWR 205 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 S + G R +RR R R P + P+ Sbjct: 206 RSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSR 265 Query: 678 LLENGAHGFTENYDVSIPPV-STPEMESSNSSSDPIVK 714 G + + + S + S P + Sbjct: 266 SRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARR 303 >gi|195107937|ref|XP_001998550.1| GI23574 [Drosophila mojavensis] gi|193915144|gb|EDW14011.1| GI23574 [Drosophila mojavensis] Length = 3017 Score = 41.1 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 14/229 (6%), Positives = 50/229 (21%), Gaps = 7/229 (3%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + + + + T L + E R V Sbjct: 1039 DSQTDTAKPANECDATDKKESESKQKTETPRLKKLPSTAELEDRFNALERRISVQKASPT 1098 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + +G + + + +E + Sbjct: 1099 KAKKEPPD----EGRESKKTSPKKVAEAPAKAESKPESKEVAEEVKQTKKETSDAEIRKH 1154 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + + + ++ + + + + + PS Sbjct: 1155 AEGTKPEASDKKDEPAKASPSKNEKIQSEKKEPVKSKESLNEDDKKVEVLKRKSPPSTEE 1214 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + V E S++ ++P+ ++ + K+ + Sbjct: 1215 LEKRFNALEKQLSTSKGDTNGEVDN---EKSSNKAEPVPQEEKQTKQSE 1260 >gi|189069437|dbj|BAG37103.1| unnamed protein product [Homo sapiens] Length = 1012 Score = 41.1 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|223648228|gb|ACN10872.1| GTPase IMAP family member 7 [Salmo salar] Length = 686 Score = 41.1 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 77/248 (31%), Gaps = 12/248 (4%) Query: 402 TNLEAAEEIAR---QLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGA 458 T E EEI R + A LIV+ D ++ +++E L+ A+ + Sbjct: 390 TAEELTEEICRSIYESSPGPHAFLIVLRVNDRFTEQEKKAIE-ILESVFGSGLAKHAIIL 448 Query: 459 ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHN 518 ++ LLE + +++ C G ++ + + + + Sbjct: 449 FTHGDLLEGNSLEKLIGGNRDLSRLVEQCGGRYHVLNNRARGNRDQVTELMEKIDRMVEK 508 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 ++ N+ + I + + +++K + Sbjct: 509 NGGTCYT-------NEMFEDAARAKKEEEEKIQREEDERIQREKEWLQKEEEERIQREKE 561 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + + ++ +++ + + + +E + E V R+R + R + Sbjct: 562 WMERERIKKETRERVNMERIEEDR-MERMEKDRMERERMEKERIEKDRVERERVEKERIK 620 Query: 639 RPATDHHD 646 + + Sbjct: 621 KEKVEREK 628 >gi|224091102|ref|XP_002309179.1| predicted protein [Populus trichocarpa] gi|222855155|gb|EEE92702.1| predicted protein [Populus trichocarpa] Length = 501 Score = 41.1 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 10/144 (6%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN------IECVWQDEALLPIPKSESLED 614 + F+ +G + + + + ++ V + L + Sbjct: 265 ENFHESRGEKARRKAEEKRQARLEKELLEEEEKKQREEVARLVEERRKLRDEIMEAERDR 324 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + ++ E ++R+ RR+ D G S +++ + D+ Sbjct: 325 SRSSPLTREKNSRKEAEKKRQERRKEK----DKGSSKSNSDAEDLEKKVGKESDQKRDVE 380 Query: 675 NHNLLENGAHGFTENYDVSIPPVS 698 + +E H T V + Sbjct: 381 KKSEIERRQHQKTGTESVKGQNIE 404 >gi|39973571|ref|XP_368176.1| hypothetical protein MGG_01068 [Magnaporthe oryzae 70-15] gi|145017975|gb|EDK02254.1| hypothetical protein MGG_01068 [Magnaporthe oryzae 70-15] Length = 1345 Score = 41.1 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 43/156 (27%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S L + + + S + D A + + +I + G Sbjct: 1026 RQSERLRLADAVPEPTAPKPRKSRTSTLASQGLDRAADDDDAQPAEQPDAGDIQQRPAPG 1085 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++ R R+ R + ++ + + Sbjct: 1086 PRKRGRPRKIRPIEDAASRSPSPDTPKYMSMAERMALRGKKLKVAKSRQAINRPSTKPSQ 1145 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 +E S +TP S++ P+ + + W +R Sbjct: 1146 SEASTPSTQHANTPTPVEFESAARPVTRGSVGWPKR 1181 >gi|332847785|ref|XP_003315524.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pan troglodytes] Length = 1500 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F + T K D + + + DE +P S S Sbjct: 1276 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1330 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + K ++ A D D V SS P N + + Sbjct: 1331 PKLSNKELKPQKSVVSDLEANDAKD--SVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1388 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723 A + + P+ + S P KT+ ++RK Sbjct: 1389 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1436 >gi|326924458|ref|XP_003208444.1| PREDICTED: e3 ubiquitin-protein ligase RLIM-like [Meleagris gallopavo] Length = 593 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 39/143 (27%), Gaps = 1/143 (0%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 D F +E S PS +++E D + Sbjct: 127 RTNPNSGDFRFSLEINVNRNNGNTNPETENEPSVEPSSGEDLENSQSDSEIPRSESPSVR 186 Query: 613 EDIQDNIVSEE-STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + SEE + + +RR R R P A S I V + + S Sbjct: 187 QPGSERSTSEELTEEASPRGQRRARSRSPEQRRTRARTDRSRSPINPVSEAPRRSHHNTS 246 Query: 672 DITNHNLLENGAHGFTENYDVSI 694 T + N A G + Sbjct: 247 SQTFDHSAVNEAEGSSRTRQHVT 269 >gi|295103621|emb|CBL01165.1| Site-specific recombinases, DNA invertase Pin homologs [Faecalibacterium prausnitzii SL3/3] Length = 849 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 14/152 (9%), Positives = 34/152 (22%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P + + D QA + + ++ D + Sbjct: 555 PAEEISEEERVRKIDEQAEAKKNEKRQKSVQRYRERQNELKAAAQAGDPEAIAKLESERE 614 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 ++R + +RR + +++ + E E Sbjct: 615 RKRLQGAKRRAELKAIREADPEYLRTMEEKERIRLEKMQEAERRKAEKQKNKAKRTRKEL 674 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ E + + R KR Sbjct: 675 KALAEAGDPEAIAERDAMLAKDAEARKRKKKR 706 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 59/231 (25%), Gaps = 11/231 (4%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 + S+ R E A + ++R + + R + Sbjct: 575 KKNEKRQKSVQRYRERQNELKAAAQ--AGDPEAIAKLESERERKRLQGAKRRAELKAIRE 632 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 E + E+ + + + + + + L + ++ E Sbjct: 633 ADPEYLRTMEEKERIRLEKMQEAE--------RRKAEKQKNKAKRTRKELKALAEAGDPE 684 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 I + RKR+++R R A D A + N I Sbjct: 685 AIAERDAMLAKDAEARKRKKKRYAERMANDPEYAEKIRQRQRAYNKAHADKRKADYADLI 744 Query: 674 TNHNLLENGAHGFTE-NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 A E S V + + +DP + KR+K Sbjct: 745 KRAETDPEAARKLAEIRAYQSRKTVECYQNLVERAKTDPAAAEKLAQKRQK 795 >gi|15220892|ref|NP_178208.1| MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana] gi|6503305|gb|AAF14681.1|AC011713_29 Contains similarity to gb|U19615 LET 858 gene from Caenorhabditis elegans. ESTs gb|AI995150, gb|H76674 and gb|R84035 come from this gene [Arabidopsis thaliana] gi|22654971|gb|AAM98078.1| At1g80930/F23A5_23 [Arabidopsis thaliana] gi|28416525|gb|AAO42793.1| At1g80930/F23A5_23 [Arabidopsis thaliana] gi|332198347|gb|AEE36468.1| pre-mRNA-splicing factor CWC22 [Arabidopsis thaliana] Length = 900 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 43/217 (19%), Gaps = 13/217 (5%) Query: 509 EYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKG 568 E ++ ++ E G I V D + KG Sbjct: 67 EGRRGDKVRRKETSDDEELARRSRKDRKEANSGSEDDRGKRIEVDSD---GDGERRVNKG 123 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES---- 624 + D + + +E + +E S Sbjct: 124 RNTDRVRADTSSDEEDDLKGNKKEPMEVDDDYGRRGRRRSPKVMEKQGRERSHRGSRVIA 183 Query: 625 ----TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP--SDITNHNL 678 ++R R RR D D + + + + + Sbjct: 184 DKPSDEEDDRQRSRGGRRESQRKRRDHRASDDDEEGEIRSERRGKEKNDRGSEGLLKRDR 243 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E EN + D ++ Sbjct: 244 RERDLTDGHENGSRRRESERKDRSRRDDGVRDEKERR 280 >gi|15895607|ref|NP_348956.1| recombination and DNA strand exchange inhibitor protein [Clostridium acetobutylicum ATCC 824] gi|38604976|sp|Q97GM6|MUTS2_CLOAB RecName: Full=MutS2 protein gi|15025349|gb|AAK80296.1|AE007734_10 DNA mismatch repair protein mutS, YSHD B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] Length = 788 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 71/218 (32%), Gaps = 8/218 (3%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIV----EYEARFGV--SINVVIGIELADKLFYIEK 567 ++ + + Y++ + R I E+E + +V L F E+ Sbjct: 484 GKSNAFEISKRLGLSDYIIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKAEFLKEQ 543 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + ++++ + + + + L+D+++ S+ Sbjct: 544 AEKFKEKYEEKVSSITETREKALHEGRREAKKIIEEAKSEADKILKDMREMERLGYSSEA 603 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID--DSFDMYMEPSDITNHNLLENGAHG 685 ++ + R++ + ++ + + + + PS ++ Sbjct: 604 RQRLQESRQKLKEKLNNAEESLNISERDQGEALKSVKEGEEVFIPSLNMKGIVISTQDSK 663 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 I ++ + ++++PI KK + K+R+ Sbjct: 664 GEVGIQAGIMKINVKLKDLRKTNNNPISKKEKAVKKRE 701 >gi|332819231|ref|XP_003310320.1| PREDICTED: LOW QUALITY PROTEIN: biorientation of chromosomes in cell division protein 1-like [Pan troglodytes] Length = 2926 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 28/262 (10%), Positives = 70/262 (26%), Gaps = 23/262 (8%) Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 + +G+ ++ + S + + A I H+ + ++R Sbjct: 2585 LMNESLNVENSGFRTNEEIHSESYNKGEISSGRKDNAEAISGHSVEADPKEVEEEERHMP 2644 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQ 586 + +S IE + K S++ Sbjct: 2645 KRKRKQHYLSSEDEPDDNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPKTSSETN 2704 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---------- 636 + + E + K E +D E+ +I+++R R R Sbjct: 2705 STTSRVMEEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKM 2764 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + TD V SS + + + + E +++ ++ + Sbjct: 2765 KDDSKTDTGIVTVEQSPSSSKLKVMQTDESNKETANLQERSISNDDGEEKIVTSVRRRGR 2824 Query: 697 VSTPEMESSNSSSDPIVKKTRW 718 + S+ + ++ R Sbjct: 2825 KPKRSLTVSDDAESSEPERKRQ 2846 >gi|195154857|ref|XP_002018329.1| GL17653 [Drosophila persimilis] gi|194114125|gb|EDW36168.1| GL17653 [Drosophila persimilis] Length = 638 Score = 41.1 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 53/220 (24%), Gaps = 10/220 (4%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 + A + V+ ++ I+ + + + L Sbjct: 408 QHLKTRNVQAQRAKVLRETRLIPKVIMVIEDFNKHIILLSKKTKTFNRLTDYLHLGT--- 464 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 S +++ + ++ ++ D ++ +E Sbjct: 465 ----MRDFDIKSTDLKAAIERSLTDTHEVAEDDCTTEDMEDIDHSNDPSNDEEEEAETEI 520 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +++R+RR + + I D E ++ + Sbjct: 521 IQAPNKRQRQRRAPISDTEESQPKRRRGQKAKIVQSAKPQSDDEQESNEEQLETIQTTKL 580 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 T+ ST S+ + + R RK Sbjct: 581 RNRTKKRQT---KKSTRLSNEEESAEERGPTEQRTKDMRK 617 >gi|326679400|ref|XP_002665873.2| PREDICTED: hypothetical protein LOC402866 [Danio rerio] Length = 1455 Score = 41.1 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 14/221 (6%), Positives = 41/221 (18%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + + + +K+ + V + Sbjct: 942 KREPRWRESEKKEARRTESEKKEARRSESEKKEARMSEIEKKEARRSESEKKEVRRSESE 1001 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 E F ++ ++ +A + + + E+ + E Sbjct: 1002 KKEARRSEFEKKEARRSESEKKEARSESEKKEARRSESEKKEGRRSESEKKEARRSESEK 1061 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + N ++ ++ R + + Sbjct: 1062 ARRNESEKKEARRNESEKKEARSESEKKEARRKESEKKEARRNESEKKGGRRNESEKKEG 1121 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 N E + E + S +K Sbjct: 1122 RRNESEKKDARNKSEKEARRSDSELKEASRTESELKEARRK 1162 Score = 40.7 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 1/179 (0%) Query: 537 ATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596 + I E E R I + ++ E +++ + Sbjct: 756 SEIKESEKREAKKIESEMKQARKNESEKKETRKSEPEKKEAERVETRKTESEKKEVRKSE 815 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + EA + + E + E+ ++ RR ++ +A S+ Sbjct: 816 SEKKEAERKLERKSESERKEAKKSESENKEARGNESEKKGARRSESEKKEAR-RSESEKR 874 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 +N +S ++ T + E E + KK Sbjct: 875 ENRRSESEKKEARRNESEKRETRSESEKRETRRSESEKREPRWRESEKKEARRTESEKK 933 >gi|313664939|ref|YP_004046810.1| hypothetical protein MSB_A0051 [Mycoplasma leachii PG50] gi|312949781|gb|ADR24377.1| conserved hypothetical protein [Mycoplasma leachii PG50] Length = 1663 Score = 41.1 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 55/602 (9%), Positives = 159/602 (26%), Gaps = 50/602 (8%) Query: 131 QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190 + + + S N ++ ++ IQ + +L +R Sbjct: 1051 DDLNIQIVNSFGQVKELNENNISDDFINFDKSNKNKKMSIQVSASDFSTIL------KRN 1104 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250 T + + + ++ + +I Sbjct: 1105 QFKVFTVTNSLYHLTSLNDFSFYDINTNFDKLNEQDIRKFITNTVSSQINSKYNKSIIKN 1164 Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310 + + +D+++ + + + S+ + + + ++ Sbjct: 1165 KKQDEDITLTLGKDYQFFLAKKEETDQQLEESIKRNQTFASQEI---------NDFFTKG 1215 Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 S + A + + + S + + ++ + L + + G+ Sbjct: 1216 KSSNYRIVIYALENSQYISSSNKKWFINDDKKFNAPSTIFEQLDVKELFK----ITDLGW 1271 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRL------RDLAGLIV 424 + Q E + S+D+ + + +++E +L L R + Sbjct: 1272 INKKQYEKITSLDLMNKLIELNKNNIKKLGY-DSLSSKEFLNELNLVKNKEERAGPNRFI 1330 Query: 425 VDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVC 484 ++ KNN + K + + + + ++++ Sbjct: 1331 RNYTFDIISKNNSKIFKGTLTGKFQSPNNTNIVEKARIDNI-----FKHNTIIRVKKIEQ 1385 Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS--DVVLYLLNQKRATIVEY 542 K + + +I R + I ++S ++++ N+ + Sbjct: 1386 PESKEYFWNKIIEHFNDTISRLTFKPEKDEFEIEIQKKSNSYYEIIITAKNENKHF---- 1441 Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 +I + + + I+ P + ++ + + + Sbjct: 1442 --TGSTNIFFIEDSTIDE---IIKPELPDEDKSPEPGYNEFSPDDSDSSRDDDSTNRRDE 1496 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 +P S D + + G R R ++ G S+ ++ N Sbjct: 1497 NIPGDNSSRNPDSRTPGSNSNRDGSSSNRSGNENGSRSGNEN---GTSSNPTNPSNEEQP 1553 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI-----VKKTR 717 + + N + E D ++ P TP+ + KK R Sbjct: 1554 GDYVSPHKPGNVSPESETNTNDKWWEKEDDTLEPTPTPKEPEDKIKPEEKWILGLTKKDR 1613 Query: 718 WW 719 W Sbjct: 1614 NW 1615 >gi|300176433|emb|CBK23744.2| unnamed protein product [Blastocystis hominis] Length = 498 Score = 41.1 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 13/135 (9%) Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-----------RRRRRRRRRPAT 642 + + + E +D D + + RR+ + RRP Sbjct: 119 NDDSEDEAPRKKSRRVEVSDDDDDFEPRRKPKARRPQVSDDDDEDDFEPRRKPKGRRPQV 178 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 D S D EP N G ++++ P Sbjct: 179 SDDDDDFEPRRKPKGRRPQVSDDDDFEPR--RRPKARNNDVSGDEDDFEPRRKPKGRRPQ 236 Query: 703 ESSNSSSDPIVKKTR 717 S + D ++ Sbjct: 237 VSDDEDEDEAPRRKG 251 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 41/158 (25%), Gaps = 10/158 (6%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 +A +V ++ + + + + E + Sbjct: 123 EDEAPRKKSRRVEVSDDDDDFEPRRKPKARRPQVSDDDDEDDFEPRRKPKGRRPQVSDDD 182 Query: 630 K---RRRRRRRRRPA-TDHHDAGVVSDVSSIQNVI---DDSFDMYMEPSDITNH---NLL 679 RR+ + RRP +D D + N + +D F+ +P + Sbjct: 183 DDFEPRRKPKGRRPQVSDDDDFEPRRRPKARNNDVSGDEDDFEPRRKPKGRRPQVSDDED 242 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 E+ A P + + + P + Sbjct: 243 EDEAPRRKGKAPAKSPAKGPAKSPAKAPAKSPAKGPAK 280 >gi|332858252|ref|XP_001165874.2| PREDICTED: LOW QUALITY PROTEIN: PHD finger protein 20 isoform 3 [Pan troglodytes] Length = 1012 Score = 40.7 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|195159728|ref|XP_002020730.1| GL15738 [Drosophila persimilis] gi|194117680|gb|EDW39723.1| GL15738 [Drosophila persimilis] Length = 1530 Score = 40.7 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 7/161 (4%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 VQ + + +A + +++ P+P+S N S E Sbjct: 519 NVQEESHQSWPQLKNDEAQRNPDENSSLKEEQIPQPLPESMRRLPPTRNSASAEDKTDEL 578 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 +++R+ R+P + V S + + + D NL + A E Sbjct: 579 QKKRKEHHRKPQEQNQRELVFSPTRNSVPHKRVAEEDDPNKQDEDWSNLKNDEAQRNPEE 638 Query: 690 YDVSIP-------PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P S + + +S+ K K+RK Sbjct: 639 NSSLKEEQIPQLLPESPRRLPPTRNSASAEDKTDELQKKRK 679 >gi|325118253|emb|CBZ53804.1| hypothetical protein NCLIV_035850 [Neospora caninum Liverpool] Length = 3060 Score = 40.7 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 16/181 (8%), Positives = 39/181 (21%), Gaps = 13/181 (7%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + + ++ V + G ++ A + + Sbjct: 2495 ASDARSREHSEEQRRRETSEKVGQAGQGGHCEDRKDAERREREEKAARAPGDDTNARGKD 2554 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 S + R+ +R+RR ++ + S + Sbjct: 2555 TPSRPSRSRSKSPGDRESKRQRRENEKESEKAPLASAEAKGNRGRSASVSGRDAETKESV 2614 Query: 674 TNHNLLENGA-----------HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + G + D S P + + K+T R Sbjct: 2615 RSEGAKPRGTGPPATAPASAAKKCGKEADASEQPRGPKSAVAEKLEAS--EKRTGGKDER 2672 Query: 723 K 723 + Sbjct: 2673 Q 2673 >gi|298386287|ref|ZP_06995843.1| transcription termination factor Rho [Bacteroides sp. 1_1_14] gi|298260664|gb|EFI03532.1| transcription termination factor Rho [Bacteroides sp. 1_1_14] Length = 740 Score = 40.7 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 11/151 (7%), Positives = 41/151 (27%), Gaps = 6/151 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + +K + + + ++ E Sbjct: 85 RSRTAAPKKEEKVAPAAKNAEVTKNKENAPAAKPQQQPKEEAANKAKEAPVAEPKAEKAA 144 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++ R R+ + + +V + + ++ + + + + + Sbjct: 145 P-KRKVGRPRK---DANIAEKAENKEVENAKPIVKPAEEKAVAEKPVVAPATEKAAPTQE 200 Query: 687 TENYDVSIPP--VSTPEMESSNSSSDPIVKK 715 TE P P + S P++ + Sbjct: 201 TEKKVKENKPAVAEKPVIAKPQKKSAPVIDE 231 >gi|241153529|ref|XP_002407093.1| conserved hypothetical protein [Ixodes scapularis] gi|215494024|gb|EEC03665.1| conserved hypothetical protein [Ixodes scapularis] Length = 697 Score = 40.7 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 12/279 (4%) Query: 431 EEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGA 490 E+ K+ R + ++L+ES +D+ + G + + ++ S + Y K + Sbjct: 406 EDSKHWRRLYEQLRESRARDKTGSVWKKL--LGTAQTLYDDMETAFDASLDSLFRYVKDS 463 Query: 491 GYIRSQ-SSVALSILRSVEEYLLQYTAH--NIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 + + ++ + E + + A + + D TI E Sbjct: 464 AELAGDLTPRLQELVTKMREEVAKKRAEFQEYMEQSSQDRDETHGAAVSRTIKLLEGSLK 523 Query: 548 VSINVVIGIELADKLFYIEKGSPV---QALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 +G + K + + + L +G + + + + A Sbjct: 524 K--VFQVGAKFMAKGKKVTEAKADKLFEKLSKVALALGRRWEKVATPGDAPSGGAETAAR 581 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P+ E L ++V EE RR + R R + A + QN + Sbjct: 582 KKPEEEGLGKRAMDLVEEEEKKEREDWFSRRAKGRERQRGEESTAETENWYLKRQNWRRE 641 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + +P+ + + ++ T + Sbjct: 642 AVKTTAKPTKSRADKKTRRNSSRDHRHPSLTSEEDETKK 680 >gi|13094237|dbj|BAB32786.1| Msx-2 interacting nuclear target protein [Mus musculus] Length = 3551 Score = 40.7 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%) Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 S E V Q + E E + +RR + + Sbjct: 1842 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1901 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706 ++ + + N +E A + P S E E+++ Sbjct: 1902 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1961 Query: 707 ---SSSDPIVKKTR 717 DP K+ Sbjct: 1962 PKRDRRDPSTDKSG 1975 >gi|325283014|ref|YP_004255555.1| ribonuclease R [Deinococcus proteolyticus MRP] gi|324314823|gb|ADY25938.1| ribonuclease R [Deinococcus proteolyticus MRP] Length = 1434 Score = 40.7 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 34/135 (25%) Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 +AP+ + ++ + P ++ + E+ ++ RR RR A Sbjct: 134 PIQEAPAQEPPVQPSLAEAMEEPAADQNESQEQAEPQAQAEAEAQLKPRRTGRRNAAAAE 193 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 + A S + A E + P + P Sbjct: 194 EPAAAKKPKSTRRRAAAGKSDTAAQTPESAAESPGAAVATAESSEEAATSTPPKKARPRR 253 Query: 703 ESSNSSSDPIVKKTR 717 + + T Sbjct: 254 SKAALAGAAASTDTG 268 >gi|320593091|gb|EFX05500.1| cupin domain containing protein [Grosmannia clavigera kw1407] Length = 684 Score = 40.7 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 2/140 (1%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + DE S + ++ + R ++ RR Sbjct: 222 TPDNGADDSMQMIDGPNEFADDEPEEQDEPSVHEDVAEEEEPVLPTKKRGRPPAKKTARR 281 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF--TENYDVSIPP 696 RP + + V DD D + G N V Sbjct: 282 RPGRPSNASNDVPSPPPSPPPHDDEADEEQGSAKRQRKEAKPKGRPRGRPAANRPVVEEA 341 Query: 697 VSTPEMESSNSSSDPIVKKT 716 + ++ + + KK Sbjct: 342 ADEGQSGEASQAGKRMTKKK 361 >gi|313246897|emb|CBY35750.1| unnamed protein product [Oikopleura dioica] Length = 1748 Score = 40.7 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 29/150 (19%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I++ + + + K A + D+ E Sbjct: 530 IKRLDNKRDDSQDSKSKEVYIPSENDRKKTLGETNPNAERKKDEQRGNSRRDDSDRRRER 589 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 RR +R RR + S + + Sbjct: 590 DDRGPNRREKRDNRREREPREGKHHQRERSEKNEGHSTRAERPEKGQRHREEKPESGPRE 649 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + P + + E + K Sbjct: 650 KPKRGENSRNKPEKSAKAEVAQKEEKQEAK 679 >gi|255935861|ref|XP_002558957.1| Pc13g05230 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583577|emb|CAP91592.1| Pc13g05230 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1124 Score = 40.7 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 17/142 (11%), Positives = 38/142 (26%) Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 PS ++ S+ + S G R+R R R Sbjct: 99 EDQPESIPSLGPANVEADRERRTRRGRDSDKDKTSSKRDSEPRSRGEKDDSRKRDRSRDA 158 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + Q+ D D + ++ E+ + + + P S Sbjct: 159 ESRDRPRTRKLRKKGSQDFEDRWGDEEILEDEMYPEEFEESPSKRTRLDDGSASPLASPA 218 Query: 701 EMESSNSSSDPIVKKTRWWKRR 722 + + + +++ R + R Sbjct: 219 DDIDIDPKTKQEIERQRDLRER 240 >gi|18034775|ref|NP_057520.2| PHD finger protein 20 [Homo sapiens] gi|32699605|sp|Q9BVI0|PHF20_HUMAN RecName: Full=PHD finger protein 20; AltName: Full=Glioma-expressed antigen 2; AltName: Full=Hepatocellular carcinoma-associated antigen 58; AltName: Full=Novel zinc finger protein; AltName: Full=Transcription factor TZP gi|13195151|gb|AAK13046.1| transcription factor TZP [Homo sapiens] gi|56204066|emb|CAI19247.1| PHD finger protein 20 [Homo sapiens] gi|57284133|emb|CAI43145.1| PHD finger protein 20 [Homo sapiens] gi|119596559|gb|EAW76153.1| PHD finger protein 20, isoform CRA_a [Homo sapiens] gi|119596561|gb|EAW76155.1| PHD finger protein 20, isoform CRA_a [Homo sapiens] gi|119596562|gb|EAW76156.1| PHD finger protein 20, isoform CRA_a [Homo sapiens] gi|119596563|gb|EAW76157.1| PHD finger protein 20, isoform CRA_a [Homo sapiens] Length = 1012 Score = 40.7 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|152012477|gb|AAI50179.1| PHD finger protein 20 [Homo sapiens] Length = 1012 Score = 40.7 bits (93), Expect = 0.81, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|145637296|ref|ZP_01792957.1| isopropylmalate isomerase large subunit [Haemophilus influenzae PittHH] gi|145269548|gb|EDK09490.1| isopropylmalate isomerase large subunit [Haemophilus influenzae PittHH] Length = 1763 Score = 40.7 bits (93), Expect = 0.81, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 5/150 (3%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + P + + + ++S + + + + + E +Q Sbjct: 1262 QPSATVSTEQPAKETSSNVEQPVTESTTVNTRNSAVGNPEKTTPATTQSAVNSEAVQSKT 1321 Query: 620 VSEESTGVIRKRRRRRRR----RRPATDHHDAGVVSDVS-SIQNVIDDSFDMYMEPSDIT 674 +++ + RRRR + +TD S+ S N S E S Sbjct: 1322 TEADNSESSEPKSRRRRSISQLQETSTDETTVANNSESSNKPNNRRRRSVSQPQETSTDE 1381 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMES 704 N + + P S Sbjct: 1382 TTATSTNETTVADNSESSNKPKSRRKRSVS 1411 >gi|114681715|ref|XP_001165798.1| PREDICTED: PHD finger protein 20 isoform 1 [Pan troglodytes] gi|114681717|ref|XP_001165836.1| PREDICTED: PHD finger protein 20 isoform 2 [Pan troglodytes] Length = 1012 Score = 40.7 bits (93), Expect = 0.81, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|4432952|dbj|BAA20854.1| DNA (cytosine-5-) -methyltransferase [Rattus norvegicus] Length = 340 Score = 40.7 bits (93), Expect = 0.81, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 34/155 (21%), Gaps = 6/155 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEES 624 K P + + K + A E E ++ EE Sbjct: 157 KRKPKEDSEKGNANESVAEERDQDKKRRVAGTESRASRAGESVEKPERVRPGTQLCQEEQ 216 Query: 625 TGVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 RR RR+ R R + + + DD D +L Sbjct: 217 GEQEDDRRPRRQTRELASRRKSREDPDREARPGTHLDVDDDDEKDKRSSRPRSQPRDLAT 276 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 PP E E KK Sbjct: 277 KRRPKEEVEQITPEPPEGKDEDEREEKRRKTTRKK 311 >gi|307203858|gb|EFN82794.1| TWiK family of potassium channels protein 18 [Harpegnathos saltator] Length = 889 Score = 40.7 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 46/159 (28%), Gaps = 5/159 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + V + S + + + V Q++ + ++ + D V Sbjct: 135 TRPVKQTVEVANKAEDDSPKRETTKPEVNPQVIQEKVVQDTSETPKETTVADEAVKPSEA 194 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +R +R+ + R +D S + + S P +G Sbjct: 195 RKVERRLKRKSKER----VERYSRSTDSSDMDEKSELSRRRTKSPEAARVRLKKTSGKSR 250 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVK-KTRWWKRRK 723 + + + E + S + + R + +K Sbjct: 251 SSNDSEAQKRDAEKLSREKRSPSGQKLEDTEPRTQEGKK 289 >gi|307182085|gb|EFN69463.1| DNA topoisomerase 1 [Camponotus floridanus] Length = 1038 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 47/221 (21%), Gaps = 6/221 (2%) Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS--INVVIGIELADKLF 563 E D + K E E R I + ++ Sbjct: 251 KHRESSSSSKDKQHRHEKDKD---RHRHDKSKHRDEKEKRDKDKEEIKIKEETDMKLNHA 307 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 E+ + + D + E++++ ++ Sbjct: 308 TNERFHYNLEVKPEIKEEPMTQLELDEDDDSGGERPLYIKEEDDDEEAVKEEASMDSTDG 367 Query: 624 STGVIRKRRRRRRRRRPATDHHDA-GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + + + ++ S VS +S + P Sbjct: 368 NDTRLSDLHNTTLKTEEDSEEDKPLSSRSKVSPSVKRKIESDEEEDVPLSARKKPKRATS 427 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E+ES S + K RK Sbjct: 428 SKTKKKKRKHDGENDDDSEVESEEKSKKKVRAKGEGASPRK 468 >gi|221503729|gb|EEE29413.1| trichohyalin, putative [Toxoplasma gondii VEG] Length = 2088 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 21/206 (10%), Positives = 49/206 (23%), Gaps = 3/206 (1%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 EE + A V + N+ + E E G + +E K Sbjct: 511 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEK--GKQEAIEKAVEEERKKME 568 Query: 565 IEKGS-PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 E+ K + +A ++ ++E + E + EE Sbjct: 569 QEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEE 628 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + R ++ R + + + + + E Sbjct: 629 ERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREQWQKRQEEREKENEQDG 688 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSS 709 + + T ++ Sbjct: 689 EEMKQKLQRARDENETARKRATELER 714 Score = 38.0 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 21/227 (9%), Positives = 60/227 (26%), Gaps = 8/227 (3%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 EE + A V + N+ + E E +I + E Sbjct: 379 HRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEKAVEEERKKMEQE 438 Query: 565 IEK----GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 E+ + + + + ++ E + A K E++E + Sbjct: 439 REEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEER 498 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD----SFDMYMEPSDITNH 676 + ++ R + + + V + ++ ++ +M + Sbjct: 499 KKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEK 558 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E E + + + ++ + + R+ Sbjct: 559 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQERE 605 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 14/233 (6%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 EE + A V + + + E E +I + E Sbjct: 445 HRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQE 504 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD----EALLPIPKSESLEDIQDNIV 620 E+ +A G + + K +E + A + K E++E + Sbjct: 505 REEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEMEKGKQEAIEKAVEEER 564 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 + ++ R + + + V + ++ ++ E + + Sbjct: 565 KKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEK 624 Query: 681 NGAHGFTENYD---------VSIPPVSTPEMESS-NSSSDPIVKKTRWWKRRK 723 + +E + + ++ W++R+ Sbjct: 625 AVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREQWQKRQ 677 >gi|195053924|ref|XP_001993876.1| GH18674 [Drosophila grimshawi] gi|193895746|gb|EDV94612.1| GH18674 [Drosophila grimshawi] Length = 630 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 5/220 (2%) Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVE-YEARFGVSINVVIGIE 557 + + + + L+ I+ + LL + + + E + V + + + Sbjct: 79 KMIDVTKLTTKLDLKVRTSKIVAGHEPKLTNELLQAMASVVDQRLEWQDAVQLVLNSDPD 138 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 A K P + G D + + + ++ Sbjct: 139 KAKSQ---SKPKPAKTTSKQISPTGKDPTPTQRKEKRISPQEQKLRKATEQTARKSPADK 195 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYMEPSDITNH 676 + + + + S Q V +S M P+ Sbjct: 196 EKPLRRHKPSPDASEAKPKLTKQGSKQKSPSPTKPTSKLKQQVSSESEIKSMSPTPAAQV 255 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E S P S E +P+ + + Sbjct: 256 KQPSPVKQPSPEPSPKSNAPKSPSPKEKPAPVVEPVKQPS 295 >gi|5916179|gb|AAD55931.1|AF156529_1 Msx2 interacting nuclear target protein [Mus musculus] Length = 3576 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%) Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 S E V Q + E E + +RR + + Sbjct: 1865 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1924 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706 ++ + + N +E A + P S E E+++ Sbjct: 1925 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1984 Query: 707 ---SSSDPIVKKTR 717 DP K+ Sbjct: 1985 PKRDRRDPSTDKSG 1998 >gi|320161941|ref|YP_004175166.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1] gi|319995795|dbj|BAJ64566.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1] Length = 292 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 2/126 (1%) Query: 35 KKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESN 94 + KG + V R+E AFV+ G R G L E+ Y + P + + Sbjct: 97 RDLKKGMVVKGTVVRLEKF--GAFVEIGAERPGLLHISEMAHGYVREPSEVVKEGDEIEV 154 Query: 95 IAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKG 154 + +P EE + E + + + Sbjct: 155 EVIDFNRKKRQIKLSRKALLPEPVKEEEPIQAFIEPPKRERPKDREKDKEKDKEKAQRRK 214 Query: 155 GSPEDV 160 + Sbjct: 215 KAKAPR 220 >gi|313236695|emb|CBY11952.1| unnamed protein product [Oikopleura dioica] Length = 1748 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 29/150 (19%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I++ + + + K A + D+ E Sbjct: 530 IKRLDNKRDDSQDSKSKEVYIPSENDRKKTLGETNPNAERKKDEQRGNSRRDDSDRRRER 589 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 RR +R RR + S + + Sbjct: 590 DDRGPNRREKRDNRREREPREGKHHQRERSEKNEGHSTRAERPEKGQRHREEKPESGPRE 649 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + P + + E + K Sbjct: 650 KPKRGENSRNKPEKSAKAEVAQKEEKQEAK 679 >gi|195375174|ref|XP_002046378.1| GJ12538 [Drosophila virilis] gi|194153536|gb|EDW68720.1| GJ12538 [Drosophila virilis] Length = 1083 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 4/157 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K A T + S++P K+ + D + S S + E T Sbjct: 342 KSRAAVADNGTTPENPFRSRSPERRKDNKSRRNDSSTEKREHSASRR----HKSKERPTR 397 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R R+R + + + + + Sbjct: 398 TPPRRETERQRSKERQRSKQRAGSKERKRSKERRSERQRSKERQRSLGKERQKSKDRARS 457 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E S + S + K R + + Sbjct: 458 KERQKSKERQRSKERPKERQRSKERPRSKERQRSKER 494 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 48/182 (26%), Gaps = 2/182 (1%) Query: 544 ARFGVSINVVIGIELADKL-FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 + G S V + F + + + ++ + S + + + Sbjct: 338 KKSGKSRAAVADNGTTPENPFRSRSPERRKDNKSRRNDSSTEKREHSASRRHKSKERPTR 397 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P ++E + + + RKR + RR R + + + ++ Sbjct: 398 TPPRRETERQRSKERQRSKQRAGSKERKRSKERRSERQRSKERQRSLGKERQKSKDRARS 457 Query: 663 SFDMYMEPSDITNHNLLEN-GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + E + + + E S P K K Sbjct: 458 KERQKSKERQRSKERPKERQRSKERPRSKERQRSKERLRSKERLRSKEKPRSKDRHRSKE 517 Query: 722 RK 723 R+ Sbjct: 518 RQ 519 >gi|156555382|ref|XP_001605299.1| PREDICTED: similar to WOC protein, putative [Nasonia vitripennis] Length = 1497 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 66/253 (26%), Gaps = 13/253 (5%) Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +++R S K C Q+ + + + L + + Sbjct: 180 TKKRTDDSAENIQEKKCDKKSSQTNSSEQNLECIDMENEGVKQLSSEKNDEVENTEFVQI 239 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 NQ + + E + L + +E T Sbjct: 240 -----NQDKDD-SQLENQPDAEDPFAAD-NLNTQNDNVEPMEVDSGKDKTSKSGSPKHDD 292 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 + +K + D+ I K + E + E S ++ D Sbjct: 293 NTQEKEKDTQSSDKTEEVIKKPDESEKSAKSPRDEASKSSKESSDKKDGSTEVLPGQDDK 352 Query: 648 GVVSDVSSIQNV------IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + S+ +N +D+S M+ D + A+ +N S Sbjct: 353 LCIIPDSTKENKASDKDEVDESKSADMKKKDTEKEEATDGKANQDDKNSKESKNDKDVTG 412 Query: 702 MESSNSSSDPIVK 714 S+ +S +K Sbjct: 413 SVDSSENSKENLK 425 >gi|156553024|ref|XP_001604772.1| PREDICTED: similar to ENSANGP00000011817 [Nasonia vitripennis] Length = 2108 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 32/257 (12%), Positives = 61/257 (23%), Gaps = 15/257 (5%) Query: 466 EMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 E +R+R R S +S+ G + + I + + Sbjct: 1570 ETTRRRGRPSKNQSSKSESVDDSARGVETPATEEKIEIASETPRRRGRPSKDQASKSESV 1629 Query: 526 DVVLYL-----LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 D +K E R G + E +P Sbjct: 1630 DDSATEAETPATEEKTEGASETPRRRGRPTKDQASKSESVDDSATEAETPATEEKTESAS 1689 Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 + + L ++ +E+ ES +RR R + + Sbjct: 1690 ETPRRRGRPTKDQASKSESVDDLATEVETPVMEE------KTESASETPRRRGRPTKDQA 1743 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + + V D ++ +E+ D V TP Sbjct: 1744 S----KSESVDDSATEAETPATEEKTESSSETPRRRGRPTKDQASKSESVDDLATEVETP 1799 Query: 701 EMESSNSSSDPIVKKTR 717 ME S+ ++ Sbjct: 1800 VMEEKTESASETPRRRG 1816 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 51/215 (23%), Gaps = 6/215 (2%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R Q + + + V +K E R G + Sbjct: 1574 RRGRPSKNQSSKSESVDDSARGVETPATEEKIEIASETPRRRGRPSKDQASKSESVDDSA 1633 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 E +P G + + S + + ES Sbjct: 1634 TEAETPATEEKTEGASETPRRRGRPTKDQASKSE------SVDDSATEAETPATEEKTES 1687 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +RR R + + + + ++V + + + Sbjct: 1688 ASETPRRRGRPTKDQASKSESVDDLATEVETPVMEEKTESASETPRRRGRPTKDQASKSE 1747 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 ++ + P + + ESS+ + + T+ Sbjct: 1748 SVDDSATEAETPATEEKTESSSETPRRRGRPTKDQ 1782 >gi|70998570|ref|XP_754007.1| SNF2 family helicase/ATPase (Ino80) [Aspergillus fumigatus Af293] gi|74672951|sp|Q4WTV7|INO80_ASPFU RecName: Full=Putative DNA helicase ino80 gi|66851643|gb|EAL91969.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus fumigatus Af293] Length = 1708 Score = 40.7 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 43/182 (23%), Gaps = 11/182 (6%) Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINV-VIGIE-LADKLFYIEKGSPVQALVNTGHKVG 582 + N+K T + EA + + + F +E G + Sbjct: 300 PTKAARVSNRKTLTERDAEAINKIIAEIDNADKSDVESPGFEVEYGRYMVKSKKRALDAE 359 Query: 583 SDSQAPSYDKNIE---------CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + + + + + I + E RK+ Sbjct: 360 KAEGIRRKRRRHDFLVKLGKTFEKQANAGVDRFRAANEASVIAEVQAKEIQDEKERKKDM 419 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 +R+RRR T + + N +D+ + + E Sbjct: 420 QRKRRRENTVRLEMQKKLEAERKANKANDAAEKAKFLREAERAQRKIKSTKRALEGVTSP 479 Query: 694 IP 695 Sbjct: 480 EE 481 >gi|80477884|gb|AAI08884.1| LOC733425 protein [Xenopus laevis] Length = 666 Score = 40.7 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 44/149 (29%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SDS+ + K +DEA S+S ++ + + +S Sbjct: 246 RAASDSEDEAPAKRADSDSEDEAPAKRAASDSEDEAPPKRAASDSEDEAPPKLAASDSED 305 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R A A D + + DS D ++ Sbjct: 306 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKGAASDSEDEAPPKRKV 365 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + D + + + SS D K Sbjct: 366 SSSEDDAPSKQAASTSKEKKSSEDKTRGK 394 Score = 40.7 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 43/146 (29%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SDS+ + K +DEA S+S ++ + +S Sbjct: 220 RVASDSEDEAQAKRAASDSEDEAPAKRAASDSEDEAPAKRADSDSEDEAPAKRAASDSED 279 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R A A D + + DS D ++ Sbjct: 280 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAA 339 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712 +++ D + P + + E + Sbjct: 340 SDSEDEAPPKGAASDSEDEAPPKRKV 365 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 41/148 (27%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SDS+ + K +DEA S+S ++ + + +S Sbjct: 272 RAASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKLAASDSED 331 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R A A D + + + S D + ++ Sbjct: 332 EAPPKRAASDSEDEAPPKGAASDSEDEAPPKRKVSSSEDDAPSKQAASTSKEKKSSEDKT 391 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + + P K Sbjct: 392 RGKRAIIDSDDDDVPAKHAEEETRPKGK 419 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 5/152 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + SDS+ + K +DEA S+S ++ + +S Sbjct: 300 ASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKGAASDSEDEA 359 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-----PSDITNHNLLENGA 683 +R+ A A + S ++ + P+ G Sbjct: 360 PPKRKVSSSEDDAPSKQAASTSKEKKSSEDKTRGKRAIIDSDDDDVPAKHAEEETRPKGK 419 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 +E+ S P + E + +++D + Sbjct: 420 ASDSEDEAPSKQPSDSEEETPAKAAADNSEDE 451 >gi|37999864|sp|Q62504|MINT_MOUSE RecName: Full=Msx2-interacting protein; AltName: Full=SMART/HDAC1-associated repressor protein; AltName: Full=SPEN homolog Length = 3644 Score = 40.7 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%) Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 S E V Q + E E + +RR + + Sbjct: 1933 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1992 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706 ++ + + N +E A + P S E E+++ Sbjct: 1993 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 2052 Query: 707 ---SSSDPIVKKTR 717 DP K+ Sbjct: 2053 PKRDRRDPSTDKSG 2066 >gi|326672773|ref|XP_002664136.2| PREDICTED: hypothetical protein LOC100330539 [Danio rerio] Length = 1434 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 6/239 (2%) Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQ-YTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 C + ++ A + E + + S + + + + + Sbjct: 1010 CAESHVTCHTHNEKYKAKLYENPLYEQRRKLDRQAGLESQKSSVLKRKHEDDDQDDVKK- 1068 Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 +++ + + E+ ++ HK K E + Sbjct: 1069 -SKYNKEGKLSSNAMDTKPQYSKEEDHRDIKENDSKHKDKYKKDEYDKLKYKEEEDERAR 1127 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR---RRRPATDHHDAGVVSDVSSIQNV 659 + + +S D+ + RR R+R R DH+ D + Sbjct: 1128 IKKEEEEKSRYKKDDDERNRYKKEEECSRRYRKREGESSRYEEDHYRNRDDDDDEYHRYK 1187 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 DD Y + D ++ + E E + K++W Sbjct: 1188 DDDDRYRYRKDDDRGRYSREDEKPRYDKEEDKRYKYTREVEEKSKYKGENWGKWPKSKW 1246 >gi|270009433|gb|EFA05881.1| hypothetical protein TcasGA2_TC008693 [Tribolium castaneum] Length = 1681 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 20/167 (11%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---------------S 611 +G + + V S D+ E K+E S Sbjct: 420 RGRSLIRDRDRATPVNSPKPEKDDDERKEDEKSGSEDKVKKKTEVKKDDEKKRKEIVENS 479 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI--QNVIDDSFDMYME 669 + D ES K R RR + + +++ + +NV + + ++ Sbjct: 480 DTNSSDATDQSESAPGSSKDGGRPRRLDKSKEKKIKQIIAPEKAKTVENVKKEDEEKPVK 539 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 P ++ N+ + S PP P + S+ KKT Sbjct: 540 PKEVVNNLSQKKETKPG---ETPSKPPPQKPIAKKSDDEKKRGRKKT 583 >gi|260941388|ref|XP_002614860.1| hypothetical protein CLUG_04875 [Clavispora lusitaniae ATCC 42720] gi|238851283|gb|EEQ40747.1| hypothetical protein CLUG_04875 [Clavispora lusitaniae ATCC 42720] Length = 787 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 20/156 (12%) Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR--------------- 632 +D + + +D ES + + E+ T ++ R Sbjct: 122 EDFDDDETTLQEDLDEAQAIIEESKKQNDAPHLPEQGTPKRKRGRPRKEETLKKLEQVEL 181 Query: 633 -RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD----MYMEPSDITNHNLLENGAHGFT 687 R+R RR + +A + + D E D + Sbjct: 182 TPRKRARRAVVEKREAEKRNREEKEGWLSGDDDSDDVYNESEEDDTPKRKRTPKRSSASP 241 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 V I +E+ SS P + +R K Sbjct: 242 RKSRVKIEMKEDAVIENVGSSESPFSSPKKEERRTK 277 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 43/155 (27%), Gaps = 5/155 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K ++ L ++ +K E + D N E+ T Sbjct: 169 KEETLKKLEQVELTPRKRARRAVVEKREAEKRNREEKEGWLSGDDDSDDVYNESEEDDTP 228 Query: 627 VIRKRRRR----RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 ++ +R R+ R + + V+ +V S ++ + Sbjct: 229 KRKRTPKRSSASPRKSRVKIEMKEDAVIENVGSSESPFSSPKKEERRTKKGRPSKQEKVT 288 Query: 683 AHGFTENYDVSIP-PVSTPEMESSNSSSDPIVKKT 716 + + + + E S+ P +K+ Sbjct: 289 KKVHSIFQMDDLEFFQDSIKSEKSSPVPSPQKEKS 323 >gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] Length = 717 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG--NRHGFLPFLEI 74 E ++ G IYL KV RVE AFV G + G + E+ Sbjct: 613 IEDIVREVQVGEIYLGKVKRVEKFG---AFV--GLFSGKDGLVHISEL 655 >gi|115968638|ref|XP_001188393.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 299 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 39/155 (25%), Gaps = 1/155 (0%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 L I + +A + K + + + + + + + P S Sbjct: 36 PHLLSTDLRIYRQKVEKAEKSPTKKSKTGTPSQANEGPKKRGRPRKNADPNDSSTDKTGT 95 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + K+R R R+ T+ + + S PS Sbjct: 96 TPARAGKTPASEGPKKRGRPRK-DAGTESEAETTGKTKETGEGTATPSQASAGTPSGRGR 154 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + + + TP SS ++ Sbjct: 155 PRKDGSTPSQALKKTPAKPMAIITPTRRSSRRAAK 189 >gi|303321129|ref|XP_003070559.1| RanBP1 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240110255|gb|EER28414.1| RanBP1 domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 557 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 3/150 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + S P + ++ K E + ES Sbjct: 57 RQKLKETSIAGLSRQPSPEDQPMPSQEPTSTDDNDRGRLRRKRSYDESRDADPADAESKK 116 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR+R R + ++ + + + P++ N LL Sbjct: 117 EDDGGHRRKRSRD--SKEENSSDQEKEAEPIENRERTPSALRAPANEAN-KLLSPKKKRS 173 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + D + E E + + +P + Sbjct: 174 RDQLDKDDLKLEKNEAEKTGQAKNPADGEK 203 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 3/151 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q + + + + + + S + S+E T Sbjct: 29 QAKQRCEDELPRRDVEELSEDGSGERPVRQKLKETSIAGLSRQPSPEDQPMPSQEPTSTD 88 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R R RR+R + DA + DD D N + Sbjct: 89 DNDRGRLRRKRSYDESRDA---DPADAESKKEDDGGHRRKRSRDSKEENSSDQEKEAEPI 145 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 P +N P K++R Sbjct: 146 ENRERTPSALRAPANEANKLLSPKKKRSRDQ 176 >gi|195388756|ref|XP_002053045.1| GJ23550 [Drosophila virilis] gi|194151131|gb|EDW66565.1| GJ23550 [Drosophila virilis] Length = 2024 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 45/185 (24%), Gaps = 7/185 (3%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---PSYDKNIEC 596 E E R V N + +E V+ D+ + Sbjct: 894 NELERRISVQKNSPAKAKKEPPDEGLEHNKNQSRNVSEAPAGAVDNVENEHRDPPNANDP 953 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV----SD 652 + ES + + + + + + + + D V Sbjct: 954 KSSQDKRHETEDKESAHVAEKTVTPNNEKPAHQNGKAKLEKSKETSSTEDKKEVEVVKRK 1013 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 ++ F+ + + + T N + + P E N + D Sbjct: 1014 TPPSTEELEKRFNALEKQRSSSKLESKDEAECVSTFNANEAKPEKRKQLSEGENVAKDKN 1073 Query: 713 VKKTR 717 + T+ Sbjct: 1074 EENTQ 1078 >gi|119180052|ref|XP_001241533.1| hypothetical protein CIMG_08696 [Coccidioides immitis RS] Length = 557 Score = 40.7 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 33/147 (22%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + S P + ++ K E + ES Sbjct: 57 RQKLKETSIAGLSRQPSPEDQPMPSQESASTDDNDRGRLRRKRSYDESRDADPADAESKK 116 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR+R R ++ S + + + Sbjct: 117 EDDGGHRRKRSRDSKEENSSDQEKEAEPKENRERTPSALRAPANEADKLLSPKKKRSRDQ 176 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIV 713 + D+ + + + +D Sbjct: 177 LDKDDLKLEKNEAEKTGQAKHPADGEK 203 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 3/151 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q + + + + + + S + S+ES Sbjct: 29 QAKQRCEDELPRRDVEELSEDGSGERPIRQKLKETSIAGLSRQPSPEDQPMPSQESASTD 88 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R R RR+R + DA + DD D N + + Sbjct: 89 DNDRGRLRRKRSYDESRDA---DPADAESKKEDDGGHRRKRSRDSKEENSSDQEKEAEPK 145 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 P ++ P K++R Sbjct: 146 ENRERTPSALRAPANEADKLLSPKKKRSRDQ 176 >gi|325911060|gb|ADZ45258.1| pneumococcal surface protein C [Streptococcus pneumoniae] Length = 710 Score = 40.7 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 10/231 (4%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 ++ + + V + L N K + E Sbjct: 184 VKKAELELVKEEAKESRDDEKIKQAEAKVESKKAEATRLENIK-TDREKAEEEAKRRAEA 242 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + + E+ P + D E LP P + Sbjct: 243 KLKEAVEKNVATSEQDKPKGRRKRGVPGEQATPDKKENDAKSSDSSVGEEALPSPSLKPE 302 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + K ++ RR T+ + + S V + ++ E + Sbjct: 303 KKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEAK 362 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + N A E+ + + + KK +RK Sbjct: 363 ESRNEEKVNQAKAKVESKKAEATRLEKIKTD---------RKKAEEEAKRK 404 >gi|302419735|ref|XP_003007698.1| transcription factor IWS1 [Verticillium albo-atrum VaMs.102] gi|261353349|gb|EEY15777.1| transcription factor IWS1 [Verticillium albo-atrum VaMs.102] Length = 426 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 10/139 (7%), Positives = 35/139 (25%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 ++ + ++ + + + D + E ++ + + + + Sbjct: 20 DDVEEPHEGVDGATAEDLSDVESDALSEIDENQFEDYDPETANIEDRPVAVDEDVAKTLK 79 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + + + RR ++R D +A S + + + Sbjct: 80 ASKRKQTDGDKTRKPKEGRREKKRSRADEDEAADGDFDESRPSRKSRRGAEPRPRAQKPS 139 Query: 676 HNLLENGAHGFTENYDVSI 694 E +I Sbjct: 140 PQPENEDHLSPEERRQRAI 158 >gi|149033656|gb|EDL88454.1| similar to FLJ00128 protein (predicted), isoform CRA_a [Rattus norvegicus] gi|149033657|gb|EDL88455.1| similar to FLJ00128 protein (predicted), isoform CRA_a [Rattus norvegicus] Length = 1331 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 33/145 (22%), Gaps = 5/145 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNIVSEEST 625 P + D + + A SES E + E Sbjct: 113 PGEGSSTGASSDSPSGAEADPDAAVLEAPEPPAEASGEASESCLLSGEAVGGVGQGTEGP 172 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA-H 684 +R + RR+ A S+ + D E + + + E Sbjct: 173 PDTPRRTGKGNRRKKRAAGRGAVSRGGESTPLSPRDKEETRQPEVLSLPSPSEQEPVECS 232 Query: 685 GFTENYDVSIPPVSTPEMESSNSSS 709 E D P + E Sbjct: 233 LVKEKEDSGKPESESKEELKPADEK 257 >gi|8163697|gb|AAF73808.1|AF154036_1 surface protein PspC [Streptococcus pneumoniae] Length = 519 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 57/231 (24%), Gaps = 8/231 (3%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN----QKRATIVEYEARFGVSI 550 + + ++ Q+ + V +K+A + E R Sbjct: 120 KTEELTSKTKKELDAAFEQFKKDTLSTEPEKKVAEAQKKVAEAEKKAEDQKEEDRRNYPT 179 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 +EL F + K + + + E + + K + Sbjct: 180 ITYKTLELEIAEFDV-KVKEAELELVKVKANEPRDEQKIKQAEAEVESKQAEATRLKKIK 238 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + + + + + + + + +PA + + Sbjct: 239 TDREEAEEEAKRRADAKEQGKPKPAEQPQPAPAPQPEKPKPEKPAPAPAPKPENPAEQPK 298 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ E +E + P+ E + P KT W + Sbjct: 299 AEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGWKQE 346 >gi|84043628|ref|XP_951604.1| translation initiation factor IF-2 [Trypanosoma brucei TREU927] gi|33348510|gb|AAQ15835.1| translation initiation factor IF-2, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|62359175|gb|AAX79619.1| translation initiation factor IF-2, putative [Trypanosoma brucei] Length = 833 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 32/129 (24%) Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 +V +E + E+ +P + A DE L +P + Sbjct: 107 IVPDVEKVREQQKKEREAPRPKQQKQKPTQKQEEDAADERAAKAGHESDEDSLDLPVEDD 166 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E + E + R RR ++ + + + + + Sbjct: 167 GEVTEPTESDAEVDEEDWEAMMERDDRREQRKINNERIRKRRAEMVEERLKAKEARKRAK 226 Query: 672 DITNHNLLE 680 + Sbjct: 227 EEERRAKEH 235 >gi|71895759|ref|NP_001025690.1| protein IWS1 homolog [Xenopus (Silurana) tropicalis] gi|82189135|sp|Q505H7|IWS1_XENTR RecName: Full=Protein IWS1 homolog; AltName: Full=IWS1-like protein gi|63100474|gb|AAH94537.1| hypothetical protein MGC107786 [Xenopus (Silurana) tropicalis] Length = 909 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 37/128 (28%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SDS+ + K +DEA S+S ++ + +S Sbjct: 220 RAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPPKRAASDSED 279 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R A A D + + + S D + + G Sbjct: 280 EAPPKRAASDSEDEAPPKRAASDSEDEAPAKRKVSSSEDEAPSKQAFSASKKSSKKSSGD 339 Query: 687 TENYDVSI 694 +E+ Sbjct: 340 SEDKARGK 347 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 42/143 (29%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SDS+ + K +DEA S+S ++ + +S Sbjct: 207 RAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPAKRAASDSEDEAPAKRAASDSED 266 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R A A D + + DS D +++ F Sbjct: 267 EAPPKRAASDSEDEAPPKRAASDSEDEAPPKRAASDSEDEAPAKRKVSSSEDEAPSKQAF 326 Query: 687 TENYDVSIPPVSTPEMESSNSSS 709 + + S E ++ + Sbjct: 327 SASKKSSKKSSGDSEDKARGKRA 349 >gi|195340337|ref|XP_002036770.1| GM12497 [Drosophila sechellia] gi|194130886|gb|EDW52929.1| GM12497 [Drosophila sechellia] Length = 2266 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 50/206 (24%), Gaps = 30/206 (14%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G I + + +G V ++ + S + Y K + + + Sbjct: 668 GKKIPTEVESNFVTEKIIDCRGKTVVEKISQRPRTPSPTTPKKYSKPSQKIPERVPETES 727 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRR------------------------------R 636 + E S T +RR R R Sbjct: 728 EPEKDSESETKKKTSVNGTKTETERRNSRTTKTKQPLPLKEPQSKVPAAKSPRKDSLTGR 787 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 +R + + + D+ + + + + T + Sbjct: 788 KRDSLVEETRTTTTTTTTRQGRKPSDTNGSPSIKDRLRSSPRKQKTSPQQTRTPTPAQTR 847 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722 +++ +SS D + +RR Sbjct: 848 NPEDDVDGDSSSPDASPTRVGNERRR 873 >gi|149033658|gb|EDL88456.1| similar to FLJ00128 protein (predicted), isoform CRA_b [Rattus norvegicus] gi|149033659|gb|EDL88457.1| similar to FLJ00128 protein (predicted), isoform CRA_b [Rattus norvegicus] Length = 1324 Score = 40.7 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 33/145 (22%), Gaps = 5/145 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQDNIVSEEST 625 P + D + + A SES E + E Sbjct: 113 PGEGSSTGASSDSPSGAEADPDAAVLEAPEPPAEASGEASESCLLSGEAVGGVGQGTEGP 172 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA-H 684 +R + RR+ A S+ + D E + + + E Sbjct: 173 PDTPRRTGKGNRRKKRAAGRGAVSRGGESTPLSPRDKEETRQPEVLSLPSPSEQEPVECS 232 Query: 685 GFTENYDVSIPPVSTPEMESSNSSS 709 E D P + E Sbjct: 233 LVKEKEDSGKPESESKEELKPADEK 257 >gi|224083852|ref|XP_002186985.1| PREDICTED: similar to BUD13 homolog, partial [Taeniopygia guttata] Length = 318 Score = 40.7 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 42/173 (24%), Gaps = 5/173 (2%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 +++ + + + + + P + D Sbjct: 34 SSDISGPAKSATRRQRHDTPDPSPPRRQRHDTPDVSPPRRQRHDTPDPSPPRRQRHDTPD 93 Query: 615 IQDNIVSEESTGV--IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + T +RR+R P+ D+S + D+ D+ Sbjct: 94 VSPPKRQRRDTPDLSPPRRRQRHDTPDPSPPRRQRHDTPDLSPPRRQRHDTPDLSPPRRQ 153 Query: 673 ITNHNLLENGAHGFTENYDVSIP---PVSTPEMESSNSSSDPIVKKTRWWKRR 722 + L + D S P TP++ + ++R Sbjct: 154 RHDTPDLSPPRRQRHDTPDPSPPRRQRHDTPDLSPPRRQRHDTPDPSPPRRQR 206 >gi|221468645|ref|NP_001137754.1| prominin, isoform D [Drosophila melanogaster] gi|220902376|gb|ACL83207.1| prominin, isoform D [Drosophila melanogaster] Length = 1235 Score = 40.7 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 44/176 (25%), Gaps = 10/176 (5%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + +G Q ++ S + S +++ + + L +E Sbjct: 860 RSDRSPEHEQRSGSRGRKKQRTSSSATSGRSGKRDQSRERSTSSTARPKPPLRRTATEET 919 Query: 613 EDIQDNIVSEESTG----------VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 D+ D + + R R R +R G + + Sbjct: 920 LDLADEESTPSRQQQQQPPPQRRQESDRERVRERDQRSRERELSRGRDASAMNTPVRSRS 979 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + +P D + E S + S + + +++ Sbjct: 980 RQQLRHDPEDDNWGSSSGPSRANSRERDRESSQTRKILNIWQSRNKAKTPLRRQGT 1035 >gi|198467133|ref|XP_001354268.2| GA12453 [Drosophila pseudoobscura pseudoobscura] gi|198149521|gb|EAL31321.2| GA12453 [Drosophila pseudoobscura pseudoobscura] Length = 939 Score = 40.7 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 39/158 (24%), Gaps = 1/158 (0%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 +Y ++ + ++ +E ++DE ++E N Sbjct: 242 IDDYYYDEEDQYEDEYYERPTRRHKTRPRHRKPQVEVDYEDEYEEKRVEAEKPARRNRNR 301 Query: 620 VSEESTGVIRKRRRRR-RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +E + R RR T VS + P N Sbjct: 302 YRDEEESLDEDYEERPAIRRGKPTPGPAGRKVSPPRKPGRAEERRSFNEDRPLARRRSNE 361 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ D P + E + P KT Sbjct: 362 RRTTPSSAIDDLDEYEKPYGGTDQEEAAEEQTPQKVKT 399 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 39/165 (23%), Gaps = 7/165 (4%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E P + N ++ + K Sbjct: 288 RVEAEKPARRNRNRYRDEEESLDEDYEERPAIRRGKPTPGPAGRKVSPPRKPGRAEERRS 347 Query: 624 STGVIR--KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE- 680 +RR RR P++ D + + + + + T L E Sbjct: 348 FNEDRPLARRRSNERRTTPSSAIDDLDEYEKPYGGTDQEEAAEEQTPQKVKTTPKPLTEY 407 Query: 681 ---NGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTRWWKR 721 A + P ++ P + S P+ K T + Sbjct: 408 ITPKAAAASVYARPRAPPKIARPVPITEKKKYSYPVQKNTATAQP 452 Score = 37.3 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 2/161 (1%) Query: 559 ADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 ++ + E+ + + + + + + P+ + LE+ Sbjct: 459 EEEDYSQEQAQEDDYEQPPPPPPARNIPRRRTAAPRAEQKPTRTTLRKPVTDKKPLEEDY 518 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 D + RKR R R PA D + S + + + Sbjct: 519 DEPAEQPEPPRKRKRPLAPRSRAPAPDVDFDDEDYEESLAPAPVATAAPARGILRSRSKA 578 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 V + P + + + PI +TR Sbjct: 579 TTTRKPIAPRPRQPIVEEEDTAEPIISEEEAPASPIAPRTR 619 >gi|126342194|ref|XP_001379672.1| PREDICTED: similar to THO complex 2 [Monodelphis domestica] Length = 1601 Score = 40.7 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 43/147 (29%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + K + +E E ++ + ++N E++ + Sbjct: 1346 SKDEKFKTVVTTTESKSAVEKERDKEPSREKDVAKETKSKENNKGGEKTPVAGSLKSPVP 1405 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 R ++ D S + D E + + + + + +++ + + Sbjct: 1406 RSETSESEREQKRRKLDSHSSPSHSSTVKDNLSELKESSTKHYINHTTPILSKSKEREME 1465 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ + + K R ++R Sbjct: 1466 KKDLDKLRERSREREKKEDKDRKERKR 1492 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 11/147 (7%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + S S + + N+ + + I + + E+ + Sbjct: 1415 EQKRRKLDSHSSPSHSSTVKDNLSELKESSTKHYINHTTPILSKSKEREMEKKDLDKLRE 1474 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R R ++ D + D S + D T ENG G +++ Sbjct: 1475 RSREREKKE-----------DKDRKERKRDHSNNDREVSQDSTKRRKEENGTTGASKHSK 1523 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRW 718 P S E + S K Sbjct: 1524 SESPSDSPRSNEKEKNKSKSSGKDKGT 1550 >gi|74197989|dbj|BAE35177.1| unnamed protein product [Mus musculus] Length = 384 Score = 40.7 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%) Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R+RR + + + E + + Sbjct: 229 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 288 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E + S P K TR W Sbjct: 289 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 322 >gi|74196946|dbj|BAE35030.1| unnamed protein product [Mus musculus] Length = 386 Score = 40.7 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%) Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R+RR + + + E + + Sbjct: 231 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 290 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E + S P K TR W Sbjct: 291 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 324 >gi|156537468|ref|XP_001607160.1| PREDICTED: similar to microtubule-associated protein [Nasonia vitripennis] Length = 5401 Score = 40.7 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 46/161 (28%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 L ++F IE + + + DK I Q E + Sbjct: 2538 SPSLEKEVFKIESSQEPDDVKIDVKSKSPSVEKEAADKEISPELQAEIRTDERSKSPSLE 2597 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + K + + + + S+ ++ ID S +E Sbjct: 2598 KEVSKKETSQEPDEFKAAEKSKSPSVEKESVKQEIASETAADAKTIDRSRSPSLEKEVAK 2657 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + H +++ + + + E + S P ++K Sbjct: 2658 TQAATDVRIHEKSKSPSIEKDTIQDKKPEMVDQSKSPSLEK 2698 >gi|320035983|gb|EFW17923.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 557 Score = 40.7 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 3/150 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + S P + ++ K E + ES Sbjct: 57 RQKLKETSIAGLSRQPSPEDQPMPSQEPTSTDDNDRGRLRRKRSYDESRDADPADAESKK 116 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR+R R + ++ + + + P++ N LL Sbjct: 117 EDDGGHRRKRSRD--SKEENSSDQEKEAEPIENRERTPSALRAPANEAN-KLLSPKKKRS 173 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + D + E E + + +P + Sbjct: 174 RDQLDKDDLKLEKNEAEKTGQAKNPADGEK 203 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 3/151 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q + + + + + + S + S+E T Sbjct: 29 QAKQRCEDELPRRDVEELSEDGSGERPVRQKLKETSIAGLSRQPSPEDQPMPSQEPTSTD 88 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R R RR+R + DA + DD D N + Sbjct: 89 DNDRGRLRRKRSYDESRDA---DPADAESKKEDDGGHRRKRSRDSKEENSSDQEKEAEPI 145 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 P +N P K++R Sbjct: 146 ENRERTPSALRAPANEANKLLSPKKKRSRDQ 176 >gi|321250662|ref|XP_003191882.1| protein complex assembly-related protein [Cryptococcus gattii WM276] gi|317458350|gb|ADV20095.1| Protein complex assembly-related protein, putative [Cryptococcus gattii WM276] Length = 973 Score = 40.7 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 4/173 (2%) Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK-NIECVWQDEALLPIPKSE 610 V L+ F + + S + V S Q P+ + SE Sbjct: 395 VEGDNILSSPNFNLNELSASKPPVPVSRGSSSYGQHPAVVNLENAKKKIARLEGELTDSE 454 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPA--TDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + + ++ ++ R A + DA ++ + D++ + Sbjct: 455 KARKKAEERPKDLVDPAELRKAKKEIERLKAELKNAQDARKSAEDLLAHSGNDETGKISK 514 Query: 669 EPSDITNHNLLENGAHGFTEN-YDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 I++ ++ + + E+ D +K+ + W+ Sbjct: 515 LSEQISDLRENLMAVQVEKDDLEEKLKENPDSKELAKVQKEFDEQLKEKKDWE 567 >gi|188997064|ref|YP_001931315.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932131|gb|ACD66761.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 565 Score = 40.7 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 5/122 (4%) Query: 35 KKQIKGNIYLAKVTR-VEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKES 93 K G++ KV + +E A VD G N GF+P EI + IP SD+ L +E Sbjct: 431 SKYKVGDVVKGKVKKLIEKG---AIVDLGENIEGFIPVSEIALERINIP-SDKLELHQEV 486 Query: 94 NIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVK 153 + +T I D + ++E + ++ + + Sbjct: 487 EAKIIKIDPENKKITLSIKQILLDEEKRKKEEEKRKAEEEAKRKLLEKLESKKEETKQPE 546 Query: 154 GG 155 G Sbjct: 547 GE 548 >gi|85857476|gb|ABC86274.1| RE28791p [Drosophila melanogaster] Length = 1085 Score = 40.7 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 10/162 (6%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK NT + +D + D + ++ Sbjct: 6 EKDEVGGEPRNTASGKSQERDQSRGKTKDRSRERDRTRNKTREKSQARDQTRSKANDAEH 65 Query: 626 GVIRKRRR---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME------PSDITNH 676 + R+R R +RR + + ++ S + + S + + + TN Sbjct: 66 TRAKSRKRSSSRDKRREKSKEKLGDKEKNEDLSKEKLEGKSTEHSEKRNESKVKNKDTNE 125 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 +++ + S + ++ + P KK R Sbjct: 126 ENANKKLRERSKDRNHSKERLHE-RTQNKSEERKPEAKKVRN 166 >gi|322701294|gb|EFY93044.1| transcriptional regulator (Cti6), putative [Metarhizium acridum CQMa 102] Length = 720 Score = 40.7 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 13/151 (8%), Positives = 34/151 (22%), Gaps = 3/151 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G N + + + + + + Sbjct: 425 RGRSDSEDSNNNASIKRQRTSSRSASPPAEKQEPVDEQVSDDETETRNGAKKSKNNQQHR 484 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++ R R+R+ A + D S +M + + E+ + Sbjct: 485 EKSEKEDRERQRQEAANKRKGRAER---RRAEDSDLSEEMPLAAAKAVQQKPAESPSKEE 541 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + +S+S R Sbjct: 542 SPSVAQPPGTPPPTHPTASSSHKRGARANKR 572 >gi|171913621|ref|ZP_02929091.1| endoglucanase Y [Verrucomicrobium spinosum DSM 4136] Length = 660 Score = 40.7 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 17/186 (9%), Positives = 45/186 (24%), Gaps = 9/186 (4%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADK-------LFYIEKGSPVQALVNTGHKVGSD 584 N+ A E ++ + L + I+ Q + K Sbjct: 413 KNEADAARDRLEGEAKINALMQERARLMQEALTAPDDDKRIDAMEEEQKIRREIEKETVK 472 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 Q + K + QDEA + E+ + +E ++ + + Sbjct: 473 QQEEAKRKAEDQRKQDEADILAIAQAREEEAKARKEAEFEQMTPIQKIAALQ--QEKNQL 530 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 + S + + + + + S + + Sbjct: 531 DADAARLEESDPEQAAKKRTEAIAVGGKLREEQKKLSDDETRKADDIKSKADEEAKKRQD 590 Query: 705 SNSSSD 710 + ++ Sbjct: 591 AMTARQ 596 >gi|242080077|ref|XP_002444807.1| hypothetical protein SORBIDRAFT_07g028330 [Sorghum bicolor] gi|241941157|gb|EES14302.1| hypothetical protein SORBIDRAFT_07g028330 [Sorghum bicolor] Length = 508 Score = 40.7 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 34/154 (22%), Gaps = 1/154 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + + + ++ DE + ++ + + Sbjct: 212 ERRKRAHSSLGHKKEENRSRHKKQHREDSSDSDNDEPQRRKQDASEDDEPRRRQQDDNEP 271 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ RRRR D + DD D ++ Sbjct: 272 RRRQRDDNEPRRRRQDNGEPRRRRQDDDEPRRRRQDDDEPRRRRQDDDEPRGRRQDDEKP 331 Query: 686 FTEN-YDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 D + S P + R Sbjct: 332 RERGYVDRPRYDRFDVDDRKRRHHSPPDSRPKRV 365 >gi|147838879|emb|CAN63666.1| hypothetical protein VITISV_013183 [Vitis vinifera] Length = 1229 Score = 40.7 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 70/265 (26%), Gaps = 32/265 (12%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT------IVEYE 543 + + S + + +E + N +R + E Sbjct: 141 RSKSKEEKSRDGELEKVMERDSRHSDRKETNREKGHGSSDQVRNPRRRWDDADSVVKGEE 200 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP-----SYDKNIECVW 598 + + + E+ + + G DS + S + Sbjct: 201 SNYEKADLRSGKASDPKNEGAKERNASAKTEPTESKNRGIDSNSDKGVKSSNKEERRNDA 260 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR---RPATDHHDAGVVSDVSS 655 + ++ ++ + E+ +G + + R++R R ++ + +D Sbjct: 261 ERSKSKNRAEAPEEDNKASPLAREDRSGREKNEKHRQQRTPTGRDVAENRERSFNTDEDG 320 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV---STPEMESSNSSSDPI 712 + D S + H +ENY+ E+E D Sbjct: 321 SVWMRDKSGREVGHSNRSRTPERSG-RRHQGSENYETDYERSVGLKRKELEKDGYRDDRS 379 Query: 713 V-KKTRW-------------WKRRK 723 ++ W WKRR+ Sbjct: 380 KGREDSWGDRNRDREGSKESWKRRQ 404 >gi|118355820|ref|XP_001011169.1| hypothetical protein TTHERM_00145290 [Tetrahymena thermophila] gi|89292936|gb|EAR90924.1| hypothetical protein TTHERM_00145290 [Tetrahymena thermophila SB210] Length = 1504 Score = 40.7 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 3/137 (2%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + Q P + + + + + + ++ Q + K+R R+R+ + Sbjct: 1320 EVEEQTPKFISSQIETEKQSQKIEVEEQLIEQESQQVETDVTQNLSVSKKRERKRQPKKK 1379 Query: 642 TD---HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 D + S + D + + + + G +++ Sbjct: 1380 ADLNLEQKQSISEKAISKKRNQDKDEKRQQKSKNQKVNAKQKKGKDNEQTIKNLNSENEQ 1439 Query: 699 TPEMESSNSSSDPIVKK 715 + S N D K+ Sbjct: 1440 DQKSSSINEQQDDESKE 1456 >gi|189238078|ref|XP_971743.2| PREDICTED: similar to DNA helicase recq5 [Tribolium castaneum] Length = 1707 Score = 40.7 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 17/229 (7%), Positives = 61/229 (26%), Gaps = 12/229 (5%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 +S+ E ++ K + + + + I+ + + Sbjct: 638 KSLREEEDLKKTDEETKPIEEELKKRKQTDKEEILKKCDEE-EIKISESVDETKKTEAES 696 Query: 565 IEKGSPVQALV---NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 +E+ + K E + + E + K+E + + + Sbjct: 697 VERLKKCDEEELRKAESIDERKKIEVEKLKKRDEELKKAELIDEKKKTEVDKSKKRDEEE 756 Query: 622 EESTGVIRKRRR------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + I ++++ ++R R+ + V + + ++ + + Sbjct: 757 LKKAESIDEKKKIEAEKLKKRDRKLCEVEQEVKKGETVDENEKIKLETVEKSKKQLLKKT 816 Query: 676 HNLLENGAHGFTENYDVSIPPVST--PEMESSNSSSDPIVKKTRWWKRR 722 + + + + E + + + K+R Sbjct: 817 EPMKDETCEKLKKREKKLTEENDEKLKKREDESHEKKKRDDEIKQKKKR 865 >gi|327300537|ref|XP_003234961.1| hypothetical protein TERG_04012 [Trichophyton rubrum CBS 118892] gi|326462313|gb|EGD87766.1| hypothetical protein TERG_04012 [Trichophyton rubrum CBS 118892] Length = 645 Score = 40.7 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 35/151 (23%), Gaps = 1/151 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 V A V + E V + +S + D E T Sbjct: 152 ETVPAPVTELAVEDVTPALAAPAPEPEPVKEPVQEPVKDESVNKSPSADIEAIREDTDES 211 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RKR+RR + P+ Q ++ E L Sbjct: 212 RKRKRRSQTPPPSPRSIALKKARLEEEQQQSRSTQEEIKGEERKEEQEALAAAPVIAEPP 271 Query: 689 NYDVSIP-PVSTPEMESSNSSSDPIVKKTRW 718 D + TP ++ K R Sbjct: 272 ARDTDVEMKEGTPPAPEPKQEAEEDESKDRV 302 >gi|325509755|gb|ADZ21391.1| recombination and DNA strand exchange inhibitor protein [Clostridium acetobutylicum EA 2018] Length = 806 Score = 40.7 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 71/218 (32%), Gaps = 8/218 (3%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIV----EYEARFGV--SINVVIGIELADKLFYIEK 567 ++ + + Y++ + R I E+E + +V L F E+ Sbjct: 502 GKSNAFEISKRLGLSDYIIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKAEFLKEQ 561 Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + ++++ + + + + L+D+++ S+ Sbjct: 562 AEKFKEKYEEKVSSITETREKALHEGRREAKKIIEEAKSEADKILKDMREMERLGYSSEA 621 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID--DSFDMYMEPSDITNHNLLENGAHG 685 ++ + R++ + ++ + + + + PS ++ Sbjct: 622 RQRLQESRQKLKEKLNNAEESLNISERDQGEALKSVKEGEEVFIPSLNMKGIVISTQDSK 681 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 I ++ + ++++PI KK + K+R+ Sbjct: 682 GEVGIQAGIMKINVKLKDLRKTNNNPISKKEKAVKKRE 719 >gi|330922572|ref|XP_003299887.1| hypothetical protein PTT_10986 [Pyrenophora teres f. teres 0-1] gi|311326244|gb|EFQ92021.1| hypothetical protein PTT_10986 [Pyrenophora teres f. teres 0-1] Length = 9819 Score = 40.7 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 37/163 (22%), Gaps = 1/163 (0%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++V + IE+ P + + S Sbjct: 2095 SIVRDPRDIEPSRSIER-DPRDIEPSRIIDRNPRDIELPRPSETSRNGEPSRSAEPQHSP 2153 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 D+ S ES+ +R R + S +S S + P Sbjct: 2154 ESTRWSDSQRSPESSRYSDPQRSPESTRYSDSQRSPESTRSTEASRSTQPLRSTEPTRAP 2213 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + + P + + +S+ + Sbjct: 2214 EPSRYAEPSRSSEPSRSVDQARDQSPARSTSQDKESSAVKAVT 2256 >gi|284030940|ref|YP_003380871.1| RNA binding metal dependent phosphohydrolase [Kribbella flavida DSM 17836] gi|283810233|gb|ADB32072.1| RNA binding metal dependent phosphohydrolase [Kribbella flavida DSM 17836] Length = 590 Score = 40.7 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 1/125 (0%) Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 D+ ++ A+L ES + + E RR R Sbjct: 59 EAATAVAEAKSVGDRLRREAEEEAAVLRARAKESEQRTDELRRQAEERAQEADRRADEVR 118 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-ENGAHGFTENYDVSIPP 696 R+ + ++ + + + D+ L E H TE + Sbjct: 119 RQAEDRASEVRRDAEQRATAVRREAESEAQSIRDDLREQRLEMERREHRLTEREERLDEQ 178 Query: 697 VSTPE 701 E Sbjct: 179 HRAIE 183 >gi|218661253|ref|ZP_03517183.1| probable ribonuclease protein [Rhizobium etli IE4771] Length = 112 Score = 40.7 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 1/91 (1%) Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R RR+PA +A VV ++ + + N Sbjct: 20 PRGRGRRKPAASPVEALVVEAEAAPAAEAEPELAEASADLQTPAQEEAKPVRANRESNIA 79 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S P V + E+ S D KK WW+RR Sbjct: 80 SSEPTVKSTRSENGESD-DGKPKKAGWWQRR 109 >gi|325120688|emb|CBZ56243.1| hypothetical protein NCLIV_066680 [Neospora caninum Liverpool] Length = 403 Score = 40.7 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 27/107 (25%) Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + A + + E R+ RRR + + G Sbjct: 6 AHAARSRQAATPRASPCKEGNPPAASEAGENVKKSRRRGTADSPRRRDSRQSDEKGKKRR 65 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + + + DS + E A + + P+ST Sbjct: 66 LPASSPAVSDSGEQDEGRQKARKRGSREEVASKVAKPETRTKQPLST 112 >gi|320105186|ref|YP_004180777.1| hypothetical protein Isop_3672 [Isosphaera pallida ATCC 43644] gi|319752468|gb|ADV64228.1| hypothetical protein Isop_3672 [Isosphaera pallida ATCC 43644] Length = 435 Score = 40.7 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 13/164 (7%), Positives = 39/164 (23%), Gaps = 3/164 (1%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 ++ YI++ + + + + + D+ + A P Sbjct: 155 IVNPSKGLAELYIQRAAILNPYLTAARQAAEAAAPKPADEPKKEETPKPADEPKTDEPKP 214 Query: 613 EDIQDNIVSEESTG---VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + + EE+ +K + P + ++ + +++ E Sbjct: 215 APSAEEMKKEEAPKPADEPKKEEAPKPADEPKKEEAPKPADEPKTADEPKKEEAPKPADE 274 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 P E D + + + Sbjct: 275 PKTADEPKKEEAPKPADEPKTDEPKKEEAPKPADEPKTDEPKKE 318 >gi|325141927|gb|EGC64367.1| IgA-specific serine endopeptidase [Neisseria meningitidis 961-5945] gi|325197920|gb|ADY93376.1| IgA-specific serine endopeptidase [Neisseria meningitidis G2136] Length = 1552 Score = 40.7 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 R E + A + +++ ++K E A+ V Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617 E+ + A+ + QA + E + L K+E+ + Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144 Query: 618 -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663 EE + + +RR RR + DA + +N D+ Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 D P D + + + E S Sbjct: 1205 SDYEKIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245 >gi|13183005|gb|AAK15023.1| IgA1 protease [Neisseria meningitidis] Length = 1552 Score = 40.7 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 R E + A + +++ ++K E A+ V Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617 E+ + A+ + QA + E + L K+E+ + Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144 Query: 618 -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663 EE + + +RR RR + DA + +N D+ Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 D P D + + + E S Sbjct: 1205 SDYEKIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245 >gi|328778431|ref|XP_001121122.2| PREDICTED: hypothetical protein LOC725251 [Apis mellifera] Length = 903 Score = 40.7 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 56/178 (31%), Gaps = 2/178 (1%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 ++ ++ DV L + I + E + I + I IEK ++ Sbjct: 599 FSPKKEVIEDVVDVKLVMKEFDDDQIQKIENEKEIEIKTNVDISSIQNENEIEKDIIIET 658 Query: 574 LVNTGHKVGSDSQAPSYDK--NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 N +D +D+ E + ++ + + E ++ +++ + Sbjct: 659 ENNCTDNDKTDKSICEFDENMRSEEIQKNSDEIYNNNEDIQEKYKEKKQVKDNQENSETK 718 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 R++ T+ ++ ++ D+ + N N +N E Sbjct: 719 MEERKKNDDITEREKEREKEKENNDIKEREEKNDIEDRENVKKNINNKDNEKEKEQEE 776 >gi|171688302|ref|XP_001909091.1| hypothetical protein [Podospora anserina S mat+] gi|170944113|emb|CAP70223.1| unnamed protein product [Podospora anserina S mat+] Length = 1253 Score = 40.7 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 12/160 (7%), Positives = 39/160 (24%), Gaps = 4/160 (2%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 + E Q + + K + E+ ++ Sbjct: 563 EEIEAENQQDAQRKAKKAKEAQRRKDRAARKKEALAEEKARKEAEKAAEEAARKEEEERK 622 Query: 621 SEESTGVIRKRRRRRRRRRPATD----HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 E+ ++R+RR ++ A + +A + + + + Sbjct: 623 QAEAKQRAEEKRKRREAQKKAEEEERLRKEAERQRKIHEREENERKAREAKEREKKAREE 682 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 L E + + + + ++ ++ Sbjct: 683 ARLREKEQKEREARERREQQERDKREKEAKAKAERESREQ 722 >gi|82914873|ref|XP_728880.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23485476|gb|EAA20445.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 470 Score = 40.7 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 16/225 (7%), Positives = 61/225 (27%), Gaps = 2/225 (0%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV 552 IR + + + +E + + + + + ++ L + +K+ I E Sbjct: 100 IRDLKKINEELKKKTDEIMKNNSKSDKKLPENDNLYLKEIEEKKKHIENKEKELKEKQKD 159 Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + ++ + K + + + + V + + + E Sbjct: 160 LEDKQRDIDNK--QRELDEKRKETEHIKKELEGKNKEVEDKKKEVESKQKEVESKQREVE 217 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ++ ++ +K +++ +V + Q ++ Sbjct: 218 SKQKEVESKQKEVESKQKEVESKQKEVETKQKEVESKQKEVETQQKEVESKQKEVESKQK 277 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + P +M+ + +K+ + Sbjct: 278 EVESKQKDIENREKESKETKVETPNEIEQMKKNIEQKQKEIKELK 322 >gi|308470437|ref|XP_003097452.1| hypothetical protein CRE_16968 [Caenorhabditis remanei] gi|308240160|gb|EFO84112.1| hypothetical protein CRE_16968 [Caenorhabditis remanei] Length = 1561 Score = 40.7 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 50/158 (31%), Gaps = 17/158 (10%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E+ + + + + D + E +++ + + E IQ++ + Sbjct: 1 MEEEKASTSDEGPSVTIAAPPYSFQNDVDKEDSRREKDRERKREKRANESIQESQERLQQ 60 Query: 625 TGVIRKRRR-------RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 RK+++ ++R+R+ D + + ++V N Sbjct: 61 ASEYRKKKKAAETEEEKKRKRQEEADKKRLIRSQESENHKSVRRARDA----------EN 110 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ++ D S + + +D K+ Sbjct: 111 KRNSVLQDSQQDADARKNRDSQRKALDRDQETDEQRKE 148 >gi|221090771|ref|XP_002156013.1| PREDICTED: similar to Hepatoma-derived growth factor [Hydra magnipapillata] Length = 593 Score = 40.7 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 15/182 (8%), Positives = 56/182 (30%) Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 + ++ +D +N++++ E + I +L + I Sbjct: 305 KLHREKMKKERDIEKKKKINDDNDVNMNEEKSEEKITEDKIETDIQTKNDKKLQQEEKKI 364 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K + ++ + + + + + ++ K + + + + E+S+ Sbjct: 365 DKKQQEEKKIDKKQQKEEKKIDKKHQQEEKKIDKEIQKDEKKKLKEKKSKEKKVKEEKSS 424 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 V K+ +R+ + H +I + + + + + ++ Sbjct: 425 KVDEKKEQRKTKDLKTEKKHIKENGKKKENISSEENKEREQKAIEAMKRITDDNKDATVA 484 Query: 686 FT 687 Sbjct: 485 EH 486 >gi|221129661|ref|XP_002154419.1| PREDICTED: similar to Centromere protein C 1 (CENP-C) (Centromere autoantigen C) [Hydra magnipapillata] Length = 500 Score = 40.7 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 20/196 (10%), Positives = 51/196 (26%), Gaps = 17/196 (8%) Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQAL------VNTGHKVGSDSQAPSYDKNIECVW 598 I + + I K S ++ + S N + Sbjct: 18 ENNFFICFLSNPKANRNEVSIHKESAKNNKSKLNSNKTLSNQNEVSTPKESAKNNKSKLN 77 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 ++ L + + ++ N S+ ++ +R + + ++ + + Sbjct: 78 SNKTLSNQEEVLAPKESAKNNKSKLNSKSDDTKRTSNPNQNEVSTPIESAGNNKSKLNSS 137 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM-----------ESSNS 707 + + P + +N + + E+ S+ Sbjct: 138 KRLSYQEEVLAPKESAKNNQKNKSKLNSKSDDIKRTSNPNEREVLTPKESAKNNKSDSSI 197 Query: 708 SSDPIVKKTRWWKRRK 723 S K+T RRK Sbjct: 198 SKSGDNKRTSKPYRRK 213 >gi|25012455|gb|AAN71333.1| RE23622p [Drosophila melanogaster] Length = 1002 Score = 40.7 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 2/153 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P Q + + DS + + E W+D S + + + + Sbjct: 667 PSQRRQLSPGRKRQDSPSKKRPNSTERKWRDSPERKRDDSHDRKREASPNWKRDDSPARK 726 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFT 687 ++ R+R + D S +DS + SD + + + G Sbjct: 727 RKDSANRKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKDSDKKRQDSPVKRQESPGRK 786 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +P+ +S + + + + Sbjct: 787 RQDSPERKRRDSPDRRRKDSPARRRQESSGRRR 819 >gi|268555766|ref|XP_002635872.1| Hypothetical protein CBG01089 [Caenorhabditis briggsae] Length = 696 Score = 40.7 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 5/154 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 GSP + S + E Q + P S + +S G Sbjct: 529 GSPEARKPGSPDPGNSGRPEARKPGSPEARIQGIPEVQEPGSPEARK-PGSPDPRDSGGP 587 Query: 628 IRKRRRRRRRRRPAT----DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 ++ R+P + + S + D E + + E+ Sbjct: 588 GARKPGSPEARKPGSPNPGNSGRPEAQKPGSPEAQIQGIPEDRKPESPEARIQGIAEDRK 647 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 G E IP V P + P +K Sbjct: 648 PGSPEARIPGIPEVQEPGSPGARKPRSPEARKPG 681 >gi|74197265|dbj|BAE39660.1| unnamed protein product [Mus musculus] Length = 364 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%) Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R+RR + + + E + + Sbjct: 209 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 268 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E + S P K TR W Sbjct: 269 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 302 >gi|260833358|ref|XP_002611624.1| hypothetical protein BRAFLDRAFT_117138 [Branchiostoma floridae] gi|229296995|gb|EEN67634.1| hypothetical protein BRAFLDRAFT_117138 [Branchiostoma floridae] Length = 1435 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 37/168 (22%), Gaps = 15/168 (8%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI------ 619 +G Q N K G+ + E + + Sbjct: 1211 TRGRRAQGNKNEAPKKGTQRKRTVEPTEEEESPAKRPRTAAKPAAKTRLRAEADRQEEEE 1270 Query: 620 --VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 S T ++ R+ + A + + +P+ T+ Sbjct: 1271 EEDSGSDTEESGPSKKP---RKAPANRSAAAERRKSNENVTPVATRTSPRKQPTTRTSPR 1327 Query: 678 LLENGAHGFTENYDVSIP----PVSTPEMESSNSSSDPIVKKTRWWKR 721 + P ++P P+ K R +R Sbjct: 1328 KASQSGTSRSRGAAPPAPSGSRKGASPRKAPPKKEVAPVKKNVRNVRR 1375 >gi|194398729|ref|YP_002037217.1| translation initiation factor IF-2 [Streptococcus pneumoniae G54] gi|238690803|sp|B5E266|IF2_STRP4 RecName: Full=Translation initiation factor IF-2 gi|194358396|gb|ACF56844.1| translation initiation factor IF-2 [Streptococcus pneumoniae G54] Length = 930 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 45/170 (26%), Gaps = 9/170 (5%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-------DEALLPIPKSESLEDI 615 + I K ++ S+ ++E A P +++ Sbjct: 7 YEIAKELGKESKEVVARAKELGLDVKSHSSSVEEAVAAKIAASFKPAAAPKVEAKPAAPK 66 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 E + + + + V+ +N + E ++ Sbjct: 67 VSAEKKAEKSEPAKPAVAKEEAKPAEPVAPKTEKVAAKPQSRNFKAEREARAKEQAERRK 126 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS--DPIVKKTRWWKRRK 723 N N N + + +S+ + + KK + ++R+ Sbjct: 127 QNKGNNRDQQQNGNRQKNDGRNGGKQGQSNRDNRRFNDQAKKEQGQQKRR 176 >gi|321468839|gb|EFX79822.1| hypothetical protein DAPPUDRAFT_224986 [Daphnia pulex] Length = 724 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 45/170 (26%), Gaps = 4/170 (2%) Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + V +L K + + + D + V L P + Sbjct: 201 VKVKTDDKLESKSCAKDGAKKTDKTESKPRAKEESKKPTKTDSKADNVSAKSHLGARPHA 260 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + + +E +RR+ R R P + S +N Sbjct: 261 D-DRRTRKTETNESRRSHPSPKRRKSRSRSPIGRRPLSRRSRSRSPPRNRARIRP-RSRS 318 Query: 670 PSDITNHNLLENGAHGFTENYDVS--IPPVSTPEMESSNSSSDPIVKKTR 717 P+ ++ + + + P + ++ + +++T Sbjct: 319 PARSPPYHRKRSRSPAIQKRPATPPKSPRIDKAQLLEFARQNLKRMQETG 368 >gi|241760300|ref|ZP_04758395.1| translation initiation factor IF-2 [Neisseria flavescens SK114] gi|241319178|gb|EER55656.1| translation initiation factor IF-2 [Neisseria flavescens SK114] Length = 964 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 14/193 (7%), Positives = 50/193 (25%), Gaps = 10/193 (5%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 ++ + EA+ + + ++K EK + G + Sbjct: 164 KKEEAKPVEAVEAKAEAKVEAKADNKPSEKSVEAEKPVEAKKPAKAKQDKGGKGKEAKKA 223 Query: 592 KNIECVWQDEALLPIPKSESLEDI----------QDNIVSEESTGVIRKRRRRRRRRRPA 641 + ++ + ++ Q+ ++ E+ R+ +++ + + Sbjct: 224 AKPAAPAVPQPVVSEEEQAQRDEEARRAAALRAHQEALLKEKQERQARREAIKQQAVQDS 283 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 +A + S + E + + + Sbjct: 284 KPTKEAKSGERHKPAEKAKAASGEGKSEHNARGKKEDRRDRDEENQGRNAKGKGGKGGRD 343 Query: 702 MESSNSSSDPIVK 714 ++ + D V+ Sbjct: 344 RNNARNGDDERVR 356 >gi|241244950|ref|XP_002402398.1| hypothetical protein IscW_ISCW004750 [Ixodes scapularis] gi|215496334|gb|EEC05974.1| hypothetical protein IscW_ISCW004750 [Ixodes scapularis] Length = 637 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 26/131 (19%), Gaps = 8/131 (6%) Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR--RRRRRRRRPATDHHDAGVVS 651 E D K S ED + ++R + + R D + Sbjct: 23 RESGQGDVPQQDGGKKGSAEDGVTRWDPSRQSEEEKRRSGQGKEAGRDRREDKREGDKTP 82 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 D S + + S P P D Sbjct: 83 SDRKHTARSDRSHERSSGSRKAVPRSEPRKSESSRRTESRRSEPRKPEPRRLEPKRDVDS 142 Query: 712 IVKKTRWWKRR 722 W + R Sbjct: 143 ------WREPR 147 Score = 37.3 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 12/136 (8%), Positives = 33/136 (24%), Gaps = 4/136 (2%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + P + + G +A + + + S + + S ++ Sbjct: 45 VTRWDPSRQSEEEKRRSGQGKEAGRDRREDKREGDKTPSDRKHTARSDRSHERSSGSRKA 104 Query: 625 -TGVIRKRR---RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 ++ RR RR + + + + + P +L Sbjct: 105 VPRSEPRKSESSRRTESRRSEPRKPEPRRLEPKRDVDSWREPRLPRADPPRADPPRDLKR 164 Query: 681 NGAHGFTENYDVSIPP 696 T + Sbjct: 165 RAPESDTRSPAAKRSK 180 >gi|198426590|ref|XP_002124688.1| PREDICTED: similar to GI13733 [Ciona intestinalis] Length = 504 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 72/272 (26%), Gaps = 38/272 (13%) Query: 432 EKKNNRSVEKKLKESLKKDR----ARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 ++NNR+V + + + DR R + + L+ R R ++ + T Sbjct: 245 NEQNNRNVPNTVIITARPDRYVNRRRATIRPPTRNNLM---RPRPPTNTVPRTKPKRESK 301 Query: 488 KGAG---------YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK--- 535 +G G + + + I+ + H + Y+ +K Sbjct: 302 QGLGGGAVAGIVVGLLLVLVLVVGIMYRAISKRKKQNPPTQQHRQHQAL-NYIQIEKPRI 360 Query: 536 ----------RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 + +V+ ++ + ++ + + H S+ Sbjct: 361 ETTNQGSTDGSHDNAAFTKSHFAQPVLVVNEDIHPPVTVVKSDETHTSQPSGKHNQSSED 420 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 P + + KS S +R+ R R+R + Sbjct: 421 PEPRKAHRRHSAGERRSRAARVKSPSKSKT--------DRETRDRRKTRSRKRDRSPIKR 472 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + + S ++ N Sbjct: 473 KSEKSNKRSRPKDERRPRNTSKSNMDRPKNRA 504 >gi|195131207|ref|XP_002010042.1| GI15699 [Drosophila mojavensis] gi|193908492|gb|EDW07359.1| GI15699 [Drosophila mojavensis] Length = 2164 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 5/161 (3%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQ-APSYDKNIECVWQDEALLPIPKSESLED 614 + D+ +E + + + ++S A S + E P ES++D Sbjct: 136 ESVKDEHEKLESVKGENSGEPSRRESVAESTKAESVKDDKSLPVSKEPSRPASAVESVKD 195 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG----VVSDVSSIQNVIDDSFDMYMEP 670 + S + RR D+ V + S + ++ D++ +P Sbjct: 196 EHEKPESVKDEKSGEPSRRESVAESAKPDNLKDEKSLPVSKEPSRPGSAVESVKDVHDKP 255 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + E + S +S P Sbjct: 256 ESVKDEKSGEPSRRESVAESIKPDSLKDDKSLPVSKEASRP 296 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 33/162 (20%), Gaps = 4/162 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + V + P ++ + +++ Sbjct: 54 ESTKAESLKDDKSLPVSKEPSRPGSAVESVKEEHEKPEIVNDDKSGEPSRRESGAESAKP 113 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ + + P+ V D + + + Sbjct: 114 DSLKDEKSLPVSKEPSRPGSAVESVKDEHEKLESVKGENSGEPSRRESVAESTKAESVKD 173 Query: 686 FTENYDVSIP--PVSTPEMESSNSSSDPIVK--KTRWWKRRK 723 P P S E VK K+ RR+ Sbjct: 174 DKSLPVSKEPSRPASAVESVKDEHEKPESVKDEKSGEPSRRE 215 >gi|170066038|ref|XP_001868104.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167862710|gb|EDS26093.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 377 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 12/158 (7%), Positives = 33/158 (20%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + I+ + K + KNI ++ ++ + Sbjct: 115 NNRTTEQQNIKTTELQTNRTSVEKKNRKREHQKNIRKNIRETSEEYPENRTFENIRQKSE 174 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 N +EE ++ ++ RR+ +N + + Sbjct: 175 DQNRRTEEQKNRRKEEQKNRRKEEQKNKSAKEQNNRRKEEQKNRRTEHLKTLEKNQKTRT 234 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 E ++ + Sbjct: 235 EEQKNRRTEEQKNRRTEEQKNRRAEEQKNRRTEEQKNK 272 >gi|83682327|emb|CAJ28153.1| immunoglobulin G binding protein A precursor [Staphylococcus aureus] gi|83682329|emb|CAJ28154.1| immunoglobulin G binding protein A precursor [Staphylococcus aureus] Length = 507 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 13/166 (7%), Positives = 41/166 (24%), Gaps = 6/166 (3%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ ++ + +N + ++ +++ Sbjct: 267 EQRNGFIQSLKDDPSVSKE------ILAEAKKLNDAQAPKEEDNKKPGKEDGNKPGKEDG 320 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P + + +D + G + ++ + + + N Sbjct: 321 NKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDNKKPSKEDGNKPGKEDGNKPGKEDNKKPS 380 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 D + N E+G E+ + + + Sbjct: 381 KEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNK 426 >gi|301111203|ref|XP_002904681.1| Crinkler (CRN) family protein [Phytophthora infestans T30-4] gi|262095998|gb|EEY54050.1| Crinkler (CRN) family protein [Phytophthora infestans T30-4] Length = 731 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 9/115 (7%), Positives = 23/115 (20%) Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 A + + A ++ + + E + R R R+R D Sbjct: 174 AEENREKNRERDRKRAEENREENRERDRKRAEENRERDRKRAEENRERDRKRAEENRERD 233 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + + + E + + + Sbjct: 234 RKQAKEFRRLAEETRKLAEENRERDRKRAEETRKLAEEIRKLAEEKRELDRKRAQ 288 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 19/112 (16%), Gaps = 13/112 (11%) Query: 623 ESTGVIRKRRRRRRRRR-------------PATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 E + R R+R D + + Sbjct: 175 EENREKNRERDRKRAEENREENRERDRKRAEENRERDRKRAEENRERDRKRAEENRERDR 234 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 L E EN + + K+ KR Sbjct: 235 KQAKEFRRLAEETRKLAEENRERDRKRAEETRKLAEEIRKLAEEKRELDRKR 286 >gi|261367256|ref|ZP_05980139.1| putative M23 peptidase domain protein [Subdoligranulum variabile DSM 15176] gi|282570858|gb|EFB76393.1| putative M23 peptidase domain protein [Subdoligranulum variabile DSM 15176] Length = 721 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 39/184 (21%), Gaps = 20/184 (10%) Query: 524 HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGS 583 H V +K+ E + E+ P + + Sbjct: 30 HPAVKATPEQEKKEPENVLEETAEQP----PEPAASQPDVVTEEAKPAGEEIEPAAEDTP 85 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 D E E Q +E+ ++ A + Sbjct: 86 AQ--------------DAVAAEPESPELAEPAQPVETVQEAEDTPAQKAEESADEEAAAE 131 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFTENYDVSIPPVSTPE 701 A + Q++ + + N TE+ + S P Sbjct: 132 PEAAVPEGETEGPQSLEPSQTEQTSAKEESAPENPGPTPPAEVETTESPEKSEEPAIPEP 191 Query: 702 MESS 705 E + Sbjct: 192 SEKT 195 >gi|260795104|ref|XP_002592546.1| hypothetical protein BRAFLDRAFT_108418 [Branchiostoma floridae] gi|229277767|gb|EEN48557.1| hypothetical protein BRAFLDRAFT_108418 [Branchiostoma floridae] Length = 1923 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 14/170 (8%), Positives = 39/170 (22%), Gaps = 9/170 (5%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + +++ + +++Q D ++ + S Sbjct: 288 KADDHHGHDEY-LQETTAPDGDRRKAECHPTETQGEDVDVKKALESEEATSIQGSNSAPE 346 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS-DVSSIQNVIDDSFDMYMEPS 671 + EE +++ + + T + + + S +P Sbjct: 347 RRQSGTELEEEEPDTMQEMSSKCNDDQKKTCSQTKKDAKMEHKPSEQKNEPSVGNGNQPK 406 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + P + +SD KK K Sbjct: 407 MSKRQRKKMEKKAKAEQQKNSVEP-------VKKDGASDRQRKKAGKGKP 449 >gi|114645183|ref|XP_001165027.1| PREDICTED: splicing factor, arginine/serine-rich 2, interacting protein isoform 4 [Pan troglodytes] Length = 1148 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 424 ADLKQMNENSVTHRSENNMPSSDLADEKVETVSQPSESPKYTIDKAKKPRTRRSRFHSPS 483 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 484 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 537 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 538 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 595 Query: 720 KRRK 723 R + Sbjct: 596 SRER 599 >gi|156547096|ref|XP_001602419.1| PREDICTED: similar to mediator of DNA damage checkpoint 1 [Nasonia vitripennis] Length = 2649 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 7/146 (4%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGV 627 + N S S P + + + P SE ++I + S E Sbjct: 2285 DAEKDRNVSLANKSSSSRPVRQTRARKASTNVSTVDTPSSEESQEIAEILQNSSGEEANR 2344 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 RKR RR A + ++ + S N +D+ + + Sbjct: 2345 SRKRNARR-----AKNTPNSSEDTQDSESNNTQEDNVFERPVSRPKRARLVKSTKNKSSS 2399 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIV 713 +N + T + S++S Sbjct: 2400 QNNLPVDEEIRTRSPQQSSTSQKRTP 2425 >gi|157125581|ref|XP_001654397.1| hypothetical protein AaeL_AAEL010246 [Aedes aegypti] gi|108873576|gb|EAT37801.1| conserved hypothetical protein [Aedes aegypti] Length = 569 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 36/162 (22%), Gaps = 4/162 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + + Y + + P + + E E Sbjct: 171 DSDESPPRRKESSPGRRTTRVEDDYPSRKAKGYDSDHSPPRKRGNNDESPPRRSHKERKR 230 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT----NHNLLEN 681 + RR RR+ +D D S DS P + N E Sbjct: 231 RNSDESPPRRSRRQSDSDQSPPRKRQDDSRKARRRKDSDSDVSPPRRSSKPDHNRVKQER 290 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +E + ES + + R+ Sbjct: 291 SPSRASEFSLRRVKQEPPDSDESPPRRTRRRSPSSDQSPPRR 332 >gi|304310507|ref|YP_003810105.1| Translation initiation factor IF-2 [gamma proteobacterium HdN1] gi|301796240|emb|CBL44448.1| Translation initiation factor IF-2 [gamma proteobacterium HdN1] Length = 901 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 3/143 (2%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + + S + + P + ++ E+ +++R RR Sbjct: 158 AVAKAQALETSAPAEAPKPSKGQKPKPAEAGPVEQKRKEKSAEEDRRSAEEQKKREENRR 217 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + A + + D I ++ PS + + E+ S Sbjct: 218 K-AEEELKRKTMEDAKRIAEQLES--RRSDSPSAEELLDSSDLIVRRAYEDSFDEEEKQS 274 Query: 699 TPEMESSNSSSDPIVKKTRWWKR 721 S+ S + + +R Sbjct: 275 RRRRGSNRKKSSKSQPERKLVQR 297 >gi|325116127|emb|CBZ51681.1| hypothetical protein NCLIV_014750 [Neospora caninum Liverpool] Length = 1630 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 40/159 (25%), Gaps = 6/159 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P + + + + E E + + L + + +S Sbjct: 11 PSNQEPRRKRQKTKPRKGTNNPADQEKGNAQEKRRRDTEKDDLREALGDDRQGQSVEDRE 70 Query: 630 KRRRR------RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 ++ R R R + AG D S + + +G Sbjct: 71 EKEARSASVSVRGREQIQAMKETAGAEGRRQRRAQHRDRSAETVHVNTLAAQDETRASGD 130 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ + + + K+++ +RR Sbjct: 131 GDRSQKGKKRRKTEGEMQSGENEREAQAGEKESKATRRR 169 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 13/180 (7%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + +K P + N + ++Q + EAL + +S+ED Sbjct: 11 PSNQEPRRKRQKTKPRKGTNNPADQEKGNAQEKRRRDTEKDDL-REALGDDRQGQSVEDR 69 Query: 616 QDNIVSEESTGVIRKRR-----------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 ++ S V + + RR+RR D V + + Q+ S Sbjct: 70 EEKEARSASVSVRGREQIQAMKETAGAEGRRQRRAQHRDRSAETVHVNTLAAQDETRASG 129 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST-PEMESSNSSSDPIVKKTRWWKRRK 723 D G E + S + K RR+ Sbjct: 130 DGDRSQKGKKRRKTEGEMQSGENEREAQAGEKESKATRRRMRDLDETKGEGKRMKVTRRE 189 >gi|24431975|ref|NP_056467.2| hypothetical protein LOC26148 [Homo sapiens] gi|68565212|sp|Q8N655|CJ012_HUMAN RecName: Full=Uncharacterized protein C10orf12 gi|22137605|gb|AAH24315.1| Chromosome 10 open reading frame 12 [Homo sapiens] gi|55665219|emb|CAH70916.1| chromosome 10 open reading frame 12 [Homo sapiens] Length = 1247 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 34/163 (20%), Gaps = 1/163 (0%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++ + + + P + Sbjct: 1081 PKAEVQSKRKRTEGSSPPDSKNKGPTVKASKEKHADGATKTPAAKRPAARDRSSQPPKKT 1140 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 S + V ++ + P+ + SI + + + + Sbjct: 1141 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGAGESS-SRPQK 1199 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + P TPE ++ K +R+ Sbjct: 1200 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDCSHSKRR 1242 >gi|195037174|ref|XP_001990039.1| GH19119 [Drosophila grimshawi] gi|193894235|gb|EDV93101.1| GH19119 [Drosophila grimshawi] Length = 3038 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 49/190 (25%), Gaps = 8/190 (4%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ---APSY 590 + E + V + + +EK A V ++ S Sbjct: 1072 ELEDRFNALERKMSVQKSSPAKAKKEPPDGEVEKSKEPPAKVELDKAQSDETTTKVDKSI 1131 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + ++ + ++I+ E+ + R + + + Sbjct: 1132 KSKSADANEQQSSQEDRHGDKDQEIKQIRTEEKPQTPTKDRNDTQSDKAQPAKSSPSTNA 1191 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG-----FTENYDVSIPPVSTPEMESS 705 D + ++ V + E N + + S P + PE + Sbjct: 1192 EDSNEVEVVKRKTPPSTEELEKRFNALEKQLSTTNIESSDDAQPGSSSKPKETKPEAKVQ 1251 Query: 706 NSSSDPIVKK 715 + ++ + Sbjct: 1252 SVENEKQQEN 1261 >gi|121634498|ref|YP_974743.1| IgA1 protease [Neisseria meningitidis FAM18] gi|120866204|emb|CAM09944.1| IgA1 protease [Neisseria meningitidis FAM18] gi|316983676|gb|EFV62657.1| igA-specific serine endopeptidase [Neisseria meningitidis H44/76] gi|325131846|gb|EGC54546.1| IgA-specific serine endopeptidase [Neisseria meningitidis M6190] gi|325137896|gb|EGC60471.1| IgA-specific serine endopeptidase [Neisseria meningitidis ES14902] gi|325200614|gb|ADY96069.1| IgA-specific serine endopeptidase [Neisseria meningitidis H44/76] Length = 1568 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 R E + A + +++ ++K E A+ V Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617 E+ + A+ + QA + E + L K+E+ + Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144 Query: 618 -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663 EE + + +RR RR + DA + +N D+ Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 D P D + + + E S Sbjct: 1205 SDYEEIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245 >gi|255947498|ref|XP_002564516.1| Pc22g04780 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591533|emb|CAP97766.1| Pc22g04780 [Penicillium chrysogenum Wisconsin 54-1255] Length = 603 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 17/195 (8%) Query: 531 LLNQKRATIVEY-----EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 L ++ R ++ + E + EL ++ ++ P A + Sbjct: 136 LFDRVRQSLSDLMMTADEKNH---VISNANEELDRQVVRLDTVFPYIAGEISEEARLGSL 192 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR-----RRRRRRRP 640 +Y +D+ + E+ RR R++RR +P Sbjct: 193 THWAYSNKSTAKAATNERPRREAVAQRQDLSHVLQEAEAASRSEARRDAVLARKQRRAQP 252 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D+ D N D +P+ +E + V + ++ Sbjct: 253 DADYEDTRSSG-ARKTNNAKSRGGDHAADPNAAPKRRKVERPVPV---DTSVPMERSASG 308 Query: 701 EMESSNSSSDPIVKK 715 ++ DP KK Sbjct: 309 ATSQRAANKDPAEKK 323 >gi|194747085|ref|XP_001955983.1| GF24975 [Drosophila ananassae] gi|190623265|gb|EDV38789.1| GF24975 [Drosophila ananassae] Length = 1051 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 32/150 (21%), Gaps = 3/150 (2%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + S + P + +D + E E + R R+R Sbjct: 468 EREQKRSVGKEPERSSRRRSIEKDGDRKKSVEKERDRKGSVEKERRERKKSPERERDRKR 527 Query: 637 ---RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + R + S + + E Sbjct: 528 SVEKERGRKRSPEKERDRKRSPEKERDRKRSAEKERDRKRSAEKEREKPKVRPASKERHR 587 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + SS+D K R + + Sbjct: 588 SKEIKRRRSKDRQSSNDRRRSKDRQLSKER 617 >gi|283458334|ref|YP_003362956.1| transcription termination factor [Rothia mucilaginosa DY-18] gi|283134371|dbj|BAI65136.1| transcription termination factor [Rothia mucilaginosa DY-18] Length = 715 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 31/138 (22%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + S E + + ++ + RR RR Sbjct: 45 KAELVQALEEHQRGGAVAAPAAPKSEAPKSEASAEAATEFAQTPDAEKAEESKPRRTRRT 104 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R D ++ + + + + T + E A + + Sbjct: 105 RAQKDAEAKAEKTENTEAAEAPAEGVEKAEKSEKRTRSSRYETPAQKRARARRAAEGEDA 164 Query: 699 TPEMESSNSSSDPIVKKT 716 + EM +K Sbjct: 165 SAEMNEKAEKRTRRTRKD 182 >gi|171743267|ref|ZP_02919074.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC 27678] gi|283455758|ref|YP_003360322.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1] gi|171278881|gb|EDT46542.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC 27678] gi|283102392|gb|ADB09498.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1] Length = 704 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 3/134 (2%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F E+G + + H + + E + ++ + E+ +N + Sbjct: 491 FKSERGDRNER--SERHSDTYEERFKPARNRAERRAEKFRGRDNREAIAREERWENPEVQ 548 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 E+ +R+R +RR H+ ++ Q + + Sbjct: 549 ETRRDEHERKRNDKRREKYARLHEQQ-RTEADEPQEFGRRGSSGKKAKQSRKQFDKRQGA 607 Query: 683 AHGFTENYDVSIPP 696 D Sbjct: 608 PSKKQRKADAREQR 621 >gi|325911025|gb|ADZ45241.1| pneumococcal surface protein C [Streptococcus pneumoniae] Length = 482 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/188 (10%), Positives = 48/188 (25%), Gaps = 4/188 (2%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +K+A + E R N +EL F + K + + ++ Sbjct: 146 EKKAEDQKEEDRRNYPTNTYKTLELEIAEFDV-KVKEAELELLKEKAKKPLNEGTIKQAK 204 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + + + ++ + ++ + + + + +PA Sbjct: 205 EKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPAPQPEKPAPKP 264 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 ++ E +E + P+ E + P Sbjct: 265 EKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPST 321 Query: 714 KKTRWWKR 721 KT W + Sbjct: 322 PKTGWKQE 329 >gi|195349449|ref|XP_002041257.1| GM10241 [Drosophila sechellia] gi|194122952|gb|EDW44995.1| GM10241 [Drosophila sechellia] Length = 1308 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/155 (9%), Positives = 41/155 (26%), Gaps = 2/155 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + S + + + ++ A + S ++ + S+ Sbjct: 264 KKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEERKSSGDEEEAANSSDSEVM 323 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RKRRR++ + + + + S D Sbjct: 324 PQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDADGDDDKQKNKRKHIRKI 383 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + D+ + + + + I + + + R Sbjct: 384 IKTKDLDL--TTKEAAKEEDDRRKRIEDRQKLYNR 416 >gi|198472838|ref|XP_001356088.2| GA21255 [Drosophila pseudoobscura pseudoobscura] gi|198139183|gb|EAL33147.2| GA21255 [Drosophila pseudoobscura pseudoobscura] Length = 3127 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 40/161 (24%), Gaps = 6/161 (3%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + I + +P + K + + K + E + Sbjct: 1162 ESMPPP---IREATPAATSFSHPKKSPITKPLKKNLLTQMRQEESDEEAIPRKRTNSETV 1218 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSFDMYMEPSD 672 + + R+R+RR + D D+ S + + + + +E Sbjct: 1219 APTVPPVPAPPPPAVLEERQRKRRSSEDAKDSKESSGSEAPPAVSEKLKRNNEQDIEEEA 1278 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 E + S+P E DP Sbjct: 1279 DQTARAKEKHLPNKQKLPSPSLPVKEKIVSEPPIKQRDPSP 1319 >gi|167462182|ref|ZP_02327271.1| phage NTP-binding protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 610 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 10/97 (10%), Positives = 28/97 (28%) Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E + +R R R+ + + +V + + +D D+ + Sbjct: 507 EEVNADKPEVNPKRERSRKNKETEQEKDIDPEVEAEKEKLDALEAEKSGEQDVEEQPKRK 566 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + E + P + + +++R Sbjct: 567 RRSKKVEEKPAETENDEVPPWKDELSEEKPKRTRRSR 603 Score = 37.6 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 9/107 (8%) Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + +++ ++ R R+ + D V ++ + + + Sbjct: 507 EEVNADKPEVNPKRERSRKNKETEQEKDIDPEVEAEKEKLDALEAEKSGEQDVEEQPKRK 566 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E + +PP E K R + RK Sbjct: 567 RRSKKVEEKPAETENDEVPPWKDELSEE---------KPKRTRRSRK 604 >gi|322699785|gb|EFY91544.1| hypothetical protein MAC_02429 [Metarhizium acridum CQMa 102] Length = 793 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 50/213 (23%), Gaps = 5/213 (2%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R Q + V I ++EA+ + D Sbjct: 394 REALLAAAQRNVKAQLHGMDEKVYQETGRANPTLITDWEAKAQKAAQAQHEARTDDSEGK 453 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I+ G + + + S P D D+A + E L+ + + Sbjct: 454 IDLGGGMFMTQEQVNAIASKKIQPVLDD-----INDKAETERERQEVLKMEEQARREQAE 508 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 R R + ++ + + ++ E Sbjct: 509 KEKARDREVKEIAKKDKEQEKQEEKAKKLQEKMEEKARKDEEKATKAEQKRQAKEEKRRS 568 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + P + ++ + ++TR Sbjct: 569 KHGLAAATTSSPHQGEHTQEADENQAGREEETR 601 >gi|332218789|ref|XP_003258541.1| PREDICTED: biorientation of chromosomes in cell division protein 1 [Nomascus leucogenys] Length = 3048 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 23/252 (9%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +G+ ++ S + S + + A I + + ++R +S Sbjct: 2717 SGFRTNEESRSESYNKGEISSGRKDNAEAISGDSVEADPKEVEEEERHMPKRKRKHHSLS 2776 Query: 550 INVVIGIELADKLFYIEKG-------------SPVQALVNTGHKVGSDSQAPSYDKNIEC 596 IE + K S++ + + E Sbjct: 2777 SEDEPDDNPDVLDSRIETAQRQCSEMEPHDTKEENSGDLEELSKTSSETNSTASRVMEEK 2836 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR----------RRRPATDHHD 646 + K E +D E+ +I+++R R R + TD Sbjct: 2837 DEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPVDTTLKMKDDSKTDTGI 2896 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 V SS + + + + E +++ + + + S+ Sbjct: 2897 VTVEQSPSSSKLKVMQTDESNKETANLQERTISNDDGEEKIVASVRRRGRKPKRSLTVSD 2956 Query: 707 SSSDPIVKKTRW 718 + ++ R Sbjct: 2957 DAESSEPERKRQ 2968 >gi|291408143|ref|XP_002720317.1| PREDICTED: THO complex 2 [Oryctolagus cuniculus] Length = 1593 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 41/147 (27%), Gaps = 12/147 (8%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + S S + + ++ + + L I + ++ + Sbjct: 1406 EQKRRKIDTHPSPSHSSAVKDSLIELKESSTKLYINHTPPPLSKSKEREMDKKDLDKSRE 1465 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R R ++ D + D S P DI ENG G ++ Sbjct: 1466 RSREREKKDEKDRKE-----------RKRDHSNSDREVPPDIAKRRKEENGTMGVSKRKS 1514 Query: 692 VSIPPVSTP-EMESSNSSSDPIVKKTR 717 S P E + + S K+ Sbjct: 1515 ESPCDSPYPNEKDKEKNKSKSSGKEKG 1541 >gi|212538475|ref|XP_002149393.1| transcriptional elongation factor Iws1, putative [Penicillium marneffei ATCC 18224] gi|210069135|gb|EEA23226.1| transcriptional elongation factor Iws1, putative [Penicillium marneffei ATCC 18224] Length = 413 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 33/131 (25%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + +A D N + V ++ +E+L+ I + +R R Sbjct: 40 SDDESVLSEVDEAQFEDFNPDDVDIEDRPALDVDAENLKLIGRHKRKRRDDEDGEPKRTR 99 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 RR V P D + E D ++ Sbjct: 100 EGRREKKKRAQKDSDVESGDGKAVRRKAKPRREATPEDDETLSPEERRRRALDRAMDAAL 159 Query: 695 PPVSTPEMESS 705 + ++ Sbjct: 160 KQKTRRRRKAD 170 >gi|195169095|ref|XP_002025363.1| GL12280 [Drosophila persimilis] gi|194108831|gb|EDW30874.1| GL12280 [Drosophila persimilis] Length = 1832 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 35/166 (21%), Gaps = 17/166 (10%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK + + +D + +S E ++ ++ Sbjct: 381 EKLRERSKEHPKDMYMPKEKNRDRSKDRHRERSKDRHRERSKEKKSKETTRERSK-DDKK 439 Query: 626 GVIRKRRRRRRRRRPATDHHDAGV--------VSDVSSIQNVIDDSFDMYMEPSDITNHN 677 R + + + T+H + + + Sbjct: 440 NAKRPKDLKESSKESHTNHAEKPRDFPKEISHRDNKEQPKEHRSKEGVHEQSAEKRREPL 499 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--------PIVKK 715 G E + + S + S + P KK Sbjct: 500 KDNKSRPGSMEKSSAKCSKETAKDDSSKDRSGEKPRLDKSHPTEKK 545 >gi|148232738|ref|NP_001088314.1| PRP4 pre-mRNA processing factor 4 homolog B [Xenopus laevis] gi|54038078|gb|AAH84355.1| LOC495151 protein [Xenopus laevis] Length = 991 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 32/154 (20%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + ++P+ + +S E + + SE + Sbjct: 216 RISNSPAKRSKSEDQLRRSPALRHQSPEKNIKTKSPQEERVKSRERRKSPVASEIKSRER 275 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K + R + + + D + G Sbjct: 276 TKNTKSPVSRSKSKERRSKSKERKPRRSDSDRDKKPLKSPSKDASSGKENRSPGRRTAWS 335 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S+ P + S K+R R Sbjct: 336 PKARSLSPKQRDRAVRHSRSPPIHDCKSRQSPPR 369 >gi|237808990|ref|YP_002893430.1| translation initiation factor IF-2 [Tolumonas auensis DSM 9187] gi|259491502|sp|C4L8X4|IF2_TOLAT RecName: Full=Translation initiation factor IF-2 gi|237501251|gb|ACQ93844.1| translation initiation factor IF-2 [Tolumonas auensis DSM 9187] Length = 910 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 20/196 (10%), Positives = 52/196 (26%), Gaps = 15/196 (7%) Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 + ++K+A + + + G K +++ + V + Q Sbjct: 35 AMVTEHEKQALLEHLKKQHGA-------DNAEPKRMTLQRKTKGTLSVPGAGGKNKEVQI 87 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 V + + E+ E + + + + R+ A + Sbjct: 88 EVRKSKTY-VHRSVIDEAQQQKEAEEKARQEAEKTRQEELAKAEQARKDAEAKARKEAEE 146 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 + + + + + D + D + EN + + E Sbjct: 147 KARKEAEARKQSTEAAADDAAKSPDEKARKVKAEADKRADENAKREAEALRKKQEEE--- 203 Query: 708 SSDPIVKKTRWWKRRK 723 +KT +RK Sbjct: 204 ----AQRKTELEAQRK 215 >gi|156555424|ref|XP_001605706.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 2460 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 3/157 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 V A++ ++ S + + + + + L P S + I + Sbjct: 2236 KEVPAIIVEPPRLTSRGRRSTSLLKEVILEESISQLDSPASSKRNRLPRAIEQAAVSSPA 2295 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID---DSFDMYMEPSDITNHNLLENGAHG 685 R RR + + + V V + + +S D + + + Sbjct: 2296 SNTRSRRSSIQSVPEEIEEVVNQPVQTSRTTSKNTSESKDESRTRRATSVDSSVIPPTGK 2355 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ + + ++S P KK ++R Sbjct: 2356 RLTRSVLAKTSILEEIIPEESTSKSPQTKKQPTRRKR 2392 >gi|134116961|ref|XP_772707.1| hypothetical protein CNBK0810 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255325|gb|EAL18060.1| hypothetical protein CNBK0810 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1042 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 12/162 (7%), Positives = 40/162 (24%), Gaps = 5/162 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + + D+ +D + +++ G Sbjct: 390 RNKDDKKSATGEKRDEKRAVGAEKKDDKKVAAADKDDKKAAGGNRKDDKEATGAEKKAAG 449 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +K ++ + V + + + ++ ++G Sbjct: 450 AEKKNDKKAGDTKAERKVEKKEVEGERKKDDKKVGEKKHDEKVAEGDKKNDKSQSGRKKH 509 Query: 687 TENY-----DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E D + + ES + P +R+ Sbjct: 510 DEKVGEKKHDEKVAGGDKKDDESQSGRKKPSSGDKEGGDKRR 551 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 16/156 (10%), Positives = 41/156 (26%), Gaps = 6/156 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G + S + + +D+ K E + + +++ G Sbjct: 329 GEKKEERNKEHENKASRGEKKEDKNSNSREKKDDKKAAGDKKEDKKATGEKKDEKKAAGA 388 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R + ++ D A V + + + N ++ Sbjct: 389 SRNKDDKKSATGEKRDEKRA-----VGAEKKDDKKVAAADKDDKKAAGGNRKDDKEATGA 443 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + + + + + KK +R+K Sbjct: 444 EKKAAGAEKKNDKKAGDTKAER-KVEKKEVEGERKK 478 >gi|332844791|ref|XP_003314921.1| PREDICTED: synemin [Pan troglodytes] Length = 1555 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 11/166 (6%), Positives = 41/166 (24%), Gaps = 5/166 (3%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E +G +++ + + + + + Q D++ + +D Sbjct: 412 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPIY-----IGEDST 466 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + ++ + + + + + + D Sbjct: 467 IARESYRDRRDKVAAGASESTRSNERTVVLGKKTEVKATREQERNRPETIRTKPEEKMFD 526 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 S + E ++ L + S E Sbjct: 527 SKEKASEERNLRWEELTKLDKEARQRESQQMKEKDSPKEKSVRERE 572 >gi|120865004|emb|CAL51191.1| immunoglobulin G binding protein A [Staphylococcus aureus] gi|120865007|emb|CAL51192.1| immunoglobulin G binding protein A [Staphylococcus aureus] Length = 498 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/166 (7%), Positives = 41/166 (24%), Gaps = 6/166 (3%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ ++ + +N + ++ +++ Sbjct: 267 EQRNGFIQSLKDDPSVSKE------ILAEAKKLNDAQAPKEEDNKKPGKEDGNKPGKEDG 320 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P + + +D + G + ++ + + + N Sbjct: 321 NKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDNKKPSKEDGNKPGKEDGNKPGKEDNKKPS 380 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 D + N E+G E+ + + + Sbjct: 381 KEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNK 426 >gi|114664951|ref|XP_001168849.1| PREDICTED: nuclear pore complex-interacting protein-like 3-like [Pan troglodytes] Length = 325 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/141 (9%), Positives = 34/141 (24%), Gaps = 8/141 (5%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + + + A + + ++ S E + + E + ++ +R Sbjct: 190 RSADDNLKTPPLATQEAEAEKPPKPKRPRAADVETSSPEPKRRRVGDVEPSS---RKPKR 246 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 +R D + +D S ++ D S Sbjct: 247 QRAGD-----VDPSSRKPKRRRADDVDPSSSKPKRRRADDVDPSSRKPKRRRADDVDPSS 301 Query: 695 PPVSTPEMESSNSSSDPIVKK 715 + SS ++ Sbjct: 302 SKPKRRRADDVEPSSRKPKRR 322 >gi|326929120|ref|XP_003210718.1| PREDICTED: hypothetical protein LOC100539261 [Meleagris gallopavo] Length = 1760 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 51/187 (27%), Gaps = 19/187 (10%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 A EK V+ P+ ++ + E L K S Sbjct: 1035 KTDSVKASSSQKDEKALGTPRKVHPKVAKDHPEARPAKEEKAKKDHPKE--LKSEKPSSK 1092 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ED V + + + +R+R+ A H+A V S EP Sbjct: 1093 EDKSKKAVEKSKSSDAKTEKRKRKADEKADKEHEATSVKASKPETAESKTSPKGKTEPDG 1152 Query: 673 ITNHNLLENGAHG-------------FTENYDVS---IPPVSTP-EMESSNSSSDPIVKK 715 E G T VS +PPV P E +SS K Sbjct: 1153 EKGERTPEKDKSGFLITPAKKIKLNRETGKKIVSGENVPPVKEPVEKVEPSSSKVKQEKV 1212 Query: 716 TRWWKRR 722 +R+ Sbjct: 1213 KGKVRRK 1219 >gi|194871973|ref|XP_001972941.1| GG13614 [Drosophila erecta] gi|190654724|gb|EDV51967.1| GG13614 [Drosophila erecta] Length = 574 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 36/149 (24%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 IE V+ + + D+ E DE P +ES + Sbjct: 318 AIETIKQVEEVPPAPVVDSEPEEGEVRDEPEEPAKVDEPAHPEEPTESEAAAIPKELESS 377 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 K + +A V+ + + I + + + Sbjct: 378 KPEESDKSDTVDKSSDKEQPSEEAPSVNPPAEPKKPIASEPTAIDDEDQNDDVISIGGDL 437 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPI 712 E P+ + + E DP Sbjct: 438 EMMDEMTKDDDSPIVSIKSEKKEKMQDPE 466 >gi|256084729|ref|XP_002578579.1| transient receptor potential channel 2 isoform 3 [Schistosoma mansoni] gi|238663957|emb|CAZ34817.1| transient receptor potential channel 2 isoform 3 , putative [Schistosoma mansoni] Length = 636 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 36/129 (27%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + D + +DE E L D + + Sbjct: 416 KKSDDSDWRPASSDEEDDNDDEDDGFQETDEDEDNGGEGSDEDLSDEPNRRRKRKIKADR 475 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + ++RRR + + V ++ +N D+ + + + + E Sbjct: 476 KNLQKRRRSTTSDGSNAEKNVTTNDPEDENTDDEIQRVMTSSRNQLSVADEDEDEEAIKE 535 Query: 689 NYDVSIPPV 697 + S+P + Sbjct: 536 SLMNSLPDI 544 >gi|242018035|ref|XP_002429488.1| tpr repeat nuclear phosphoprotein, putative [Pediculus humanus corporis] gi|212514426|gb|EEB16750.1| tpr repeat nuclear phosphoprotein, putative [Pediculus humanus corporis] Length = 1217 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 39/151 (25%), Gaps = 12/151 (7%) Query: 559 ADKLFYIEKGSPVQALVNT-GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 + I++ + N + P + + ++ ++E + Sbjct: 875 EAEQMLIKRQEYKEKTKNAILFTELPNEMKPKSRGKGKKDYITDSDGSDAENEKPK---- 930 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 ++ +R+ R+ T S + Sbjct: 931 ------EPKERKRSEKRKEGRKGGTKRRKEKKEGGDSDSGSDKPKRTSR-GTKEPKKRRK 983 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 +++G + VS +ST E +S Sbjct: 984 KVDDGLSAKQKMKIVSKATISTSESDSDTGK 1014 >gi|170062683|ref|XP_001866774.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167880508|gb|EDS43891.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 2382 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 9/147 (6%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + V + +A + Q P ES + + S + Sbjct: 795 ERRPKDDSPVKKPVETSPVRKASQPSPDRRPKEQTPVKKPTESKESSPVRKQSQPSPDRR 854 Query: 626 GVIRKRRRRRRR---RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 V + + R+ R+P+ D +PS E Sbjct: 855 PVEKTQARKPEESPVRKPSQPSPDRRQAKKPEESPVRKRS------QPSPDRAPAQKEPS 908 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSS 709 H + +++ S PV P+ S +S Sbjct: 909 PHRCSRSHERSPVPVEKPKTPSPTKTS 935 >gi|8163632|gb|AAF73773.1|AF154006_1 surface protein PspC [Streptococcus pneumoniae] Length = 678 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 4/188 (2%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +K+A + E R N ++L + K + + GS ++ Sbjct: 302 EKKAKDQKEEDRRNYPTNTYKTLDLEIAESDV-KVKEAELELVKEEAKGSRNEEKINQAK 360 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 E + + K ++ + ++ + + + + +PA D + Sbjct: 361 AEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPDPQPEKPTEEP 420 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + ++ T+ E +E + P+ E + P Sbjct: 421 ENPAPAPKPEKPAEQPKAEKTDDQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPST 477 Query: 714 KKTRWWKR 721 KT W + Sbjct: 478 PKTGWKQE 485 Score = 37.3 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 49/199 (24%), Gaps = 1/199 (0%) Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + + +K+A + E R N +EL +E Sbjct: 125 EQFKKDTLKLGEKVAEAEKKVAEAEKKAKAQKEEDRRNYPTNTYKTLELEIAESDVEVKK 184 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 L+ K ++ +E + L K++ + ++ + Sbjct: 185 AELELLKEEAKTRNEDTINQAKAKVESKKAEATKLEEIKTDRKKAEEEAKRKAGAEEDKV 244 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 K + +RR +R + + + + PS + + E Sbjct: 245 KDKLKRRAKRAVPGEPATPDKKENDAKSSDSSVGEETLPSPS-LKSGKRSGAEKRCRAEK 303 Query: 690 YDVSIPPVSTPEMESSNSS 708 ++ Sbjct: 304 KAKDQKEEDRRNYPTNTYK 322 >gi|327266404|ref|XP_003217996.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Anolis carolinensis] Length = 1058 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 17/176 (9%), Positives = 41/176 (23%), Gaps = 21/176 (11%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I + +P + + Q + + +E + + E Sbjct: 68 RIPRQAPRERPARAAEQEALALQQKNRSYTLLEDSDEEEPGEAKAARGSKRQHPPRGPEG 127 Query: 624 STGVIRK-------------------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 K R R R++ +T + S + + D Sbjct: 128 KQRKRHKHLRQRQKEEDDDKDSDEDTREDRERKQAASTMKEEEEEDEWDRSERERLQDLE 187 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS--SDPIVKKTRW 718 + + + + + +M + + KK+RW Sbjct: 188 ERDAFAERVKRKDKEKTRNILERSDKKAYEEAQKRLKMAEEDKKLMVPELRKKSRW 243 >gi|171685210|ref|XP_001907546.1| hypothetical protein [Podospora anserina S mat+] gi|170942566|emb|CAP68218.1| unnamed protein product [Podospora anserina S mat+] Length = 1100 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 21/202 (10%), Positives = 47/202 (23%), Gaps = 9/202 (4%) Query: 518 NIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT 577 + D Y++ R+ R VSI + + + + + Sbjct: 500 RLHEQDRPDPEDYIV---RSHGNYLMDR-SVSIEL---PSMLPGNYSVFISVVGERDSEA 552 Query: 578 GHKVGSDSQA--PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + + L K+ + + + + + R + Sbjct: 553 LSIEEVVKRECKKRVENEKLAQVGYAYDLAHSKAAAHLEAVKKLRKKADQKKASEARVKE 612 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 RR+ H + + N ++ E L A T+ Sbjct: 613 RRKNWEKRHLNREITKKQGRKNNKKLEAKQAAREAKKRAEEELKPKDAGVQTDIAPKEEK 672 Query: 696 PVSTPEMESSNSSSDPIVKKTR 717 PV + + K Sbjct: 673 PVEARATDVPKTDESKDAKSDG 694 >gi|298713073|emb|CBJ48848.1| Chain A, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna Damage Checkpoint Protein 1, Mdc1 pdb|2ADO|B Chain B, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna [Ectocarpus siliculosus] Length = 1629 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 45/186 (24%), Gaps = 16/186 (8%) Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + L KG QA NT + +D + + Sbjct: 995 LKDDSTLDAPEGSTSKGLKEQAANNTTPRAVGRRAGTRRAAASASHPEDLPGEEQEPAAT 1054 Query: 612 LE----------------DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + + E RR +RRR + ++ ++ Sbjct: 1055 APAGRRGRGGKKSSSGVASEPAAVAAPEQQANEDSSNRRGKRRRTEEEEKAPLSGTEETA 1114 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 ++ P A + + + E + +S+ K+ Sbjct: 1115 RGRGKGETAASTSIPPAAKRGRRSSRAAPAPAASASLGGDEGNDEEPQEEPASAVAAGKR 1174 Query: 716 TRWWKR 721 TR W R Sbjct: 1175 TRGWGR 1180 >gi|158301050|ref|XP_001238385.2| AGAP011688-PA [Anopheles gambiae str. PEST] gi|157013454|gb|EAU75883.2| AGAP011688-PA [Anopheles gambiae str. PEST] Length = 2404 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 16/175 (9%), Positives = 42/175 (24%), Gaps = 13/175 (7%) Query: 555 GIELADKLFYIE-KGSPVQALVNTGHKVGSDSQAPSYDKNIECVW------------QDE 601 E+ + P +K + ++ Sbjct: 582 EPEITPPEQNASVETEKPDREDPAPPPKQIVETPPRKEKRDQDTKLTDSGGSRKGSSKER 641 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 P S + +E +R++ R+R + ++ Sbjct: 642 PPKESPSSRDKYRASEKSTPDEDRSRGEQRKKERKRLEEEMRKRTQSKDRPMGDERHEKR 701 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 D + D +L + G + V + +++ E E + + + Sbjct: 702 AVGDGAVRVKDDRKLSLDRVSSAGTERDQHVPLGTMASDEKEKLRKGKETDKRSS 756 >gi|148681432|gb|EDL13379.1| SPEN homolog, transcriptional regulator (Drosophila), isoform CRA_a [Mus musculus] Length = 3186 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%) Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 S E V Q + E E + +RR + + Sbjct: 1866 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1925 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706 ++ + + N +E A + P S E E+++ Sbjct: 1926 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1985 Query: 707 ---SSSDPIVKKTR 717 DP K+ Sbjct: 1986 PKRDRRDPSTDKSG 1999 >gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus] Length = 1531 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 46/168 (27%), Gaps = 13/168 (7%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F + T +K D + + + QDE +P S S Sbjct: 1307 NFDVPPRETEPRRAATKNKFTVDLDSDEDFSDFDEKTQDEDFVPSDASP-----PKTKTS 1361 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + K ++ D D V SS P N + + Sbjct: 1362 SKLNNKEPKPQKSAMSDLEGGDAKD--SVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419 Query: 682 GAHGFTENYDVSIPPVSTPEME------SSNSSSDPIVKKTRWWKRRK 723 A + N + P+ +S S P KT+ ++RK Sbjct: 1420 AAKSQSSNTTTGAKKRAAPKGTRKDPALNSGVSQKPDPVKTKNRRKRK 1467 >gi|148681433|gb|EDL13380.1| SPEN homolog, transcriptional regulator (Drosophila), isoform CRA_b [Mus musculus] Length = 3163 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 4/134 (2%) Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 S E V Q + E E + +RR + + Sbjct: 1843 ESRSPAKEPVEQPRVTRKRLERELQEAVVPPTTPRRGRPPKTRRRAEEDGEHERKEPAET 1902 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN- 706 ++ + + N +E A + P S E E+++ Sbjct: 1903 PRPAEGWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGAQASTREGNPKSRGEREAASE 1962 Query: 707 ---SSSDPIVKKTR 717 DP K+ Sbjct: 1963 PKRDRRDPSTDKSG 1976 >gi|110005908|gb|ABG48499.1| titin b [Danio rerio] Length = 28835 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 21/222 (9%), Positives = 67/222 (30%), Gaps = 11/222 (4%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 ++ + + + L+ ++ L N K+A IV E ++ ++ Sbjct: 6231 TLKKVTKRSKEHQEDRDLISLKKAIKIHHEEPSTEEEALLRNVKKAEIVAEEMKYSEAVT 6290 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + + + K+ + K++ + + + + + Sbjct: 6291 ----EVKLSSSYEVTEDTWSYETSTEAEKLSKCEEKKKEYKDVREKKEMTLEMGVKEDKF 6346 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + I ++ + + ++ R PA +A + V + P Sbjct: 6347 KSKKETKIPKKKEPEIPQPTLKKVIRSIPAEKEQEAVKLKPVEKPDKAV-------AGPQ 6399 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 +N + ++ + P+S ++E + + Sbjct: 6400 KDSNIDRSKDSIGVQKHERLLKDEPLSKKKIEVAATDQKAEE 6441 >gi|330922902|ref|XP_003300019.1| hypothetical protein PTT_11156 [Pyrenophora teres f. teres 0-1] gi|311326034|gb|EFQ91877.1| hypothetical protein PTT_11156 [Pyrenophora teres f. teres 0-1] Length = 424 Score = 40.0 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 14/141 (9%), Positives = 36/141 (25%), Gaps = 3/141 (2%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 A+V + K + + + ++EA + + ++ E + + Sbjct: 281 SAIVPSVQKKTAAVAGDVSESAADEDVEEEAKPKKTNKRTAKAAKEEDDEVEEKAEPKPK 340 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R R+ + + V ++ + E ++ T Sbjct: 341 RGRKNTKGEVKVETEDAAVDELPARPKRQSKKVKEETEEGGSDEAEEVKPVKKQSTAKAS 400 Query: 692 VS---IPPVSTPEMESSNSSS 709 + S E S Sbjct: 401 KAKINKENQSEITTEKRRSGR 421 >gi|8163674|gb|AAF73795.1|AF154026_1 surface protein PspC [Streptococcus pneumoniae] Length = 752 Score = 40.0 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 48/207 (23%), Gaps = 6/207 (2%) Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + +K+A + E R +EL +E Sbjct: 128 EQFKKDTLKPGEKVEEAQKKVEEAEKKAKDQKEEDRRNYPTITYKTLELEIAESDVEVKK 187 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 LV K + + K + EA + ++ + Sbjct: 188 AELELVKVKAKGSRNEEKIKKAKAEVESKKAEATKLEEIKTERKKAEEEAKRKAEAEEEV 247 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 K + ++R +R A + + + + PS L E Sbjct: 248 KDKLKKRTKRGALGEPATPDKKENDAKSSDSSVGEETLPSPS------LKPEKKVAEAEK 301 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + E + KT Sbjct: 302 KVAEAEKKAKDQKEEDRRNYPTNTYKT 328 >gi|195353034|ref|XP_002043015.1| GM16379 [Drosophila sechellia] gi|194127080|gb|EDW49123.1| GM16379 [Drosophila sechellia] Length = 963 Score = 40.0 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 35/155 (22%), Gaps = 1/155 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + E +D S + E + Sbjct: 626 DSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDSRDRKREASPNWKREDSPGR 685 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +++ R+R + D S ++DS ++ SD + H Sbjct: 686 KRKDSANRKREDSQDKKIQDSKRQGYSAGKKLEDSPSKKLKDSDRKRQD-SPAKRHDSPG 744 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P E P ++ RR+ Sbjct: 745 RRRRDSPERKRRESPDRRRKESPARRRQESSGRRR 779 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 38/142 (26%) Query: 582 GSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 ++ + ++ + QD+ ++ ++R R+R + Sbjct: 607 SPSGDRRRQQRSRSQNRRQDSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRDDS 666 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 D + + D + + ++ G++ + P + Sbjct: 667 RDRKREASPNWKREDSPGRKRKDSANRKREDSQDKKIQDSKRQGYSAGKKLEDSPSKKLK 726 Query: 702 MESSNSSSDPIVKKTRWWKRRK 723 P + +RR+ Sbjct: 727 DSDRKRQDSPAKRHDSPGRRRR 748 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 6/151 (3%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 +G + + + + + +S ++ + RKR Sbjct: 605 RGSPSGDRRRQQRSRSQNRRQDSPSQRRQLSPGRKRQDSPSKRPNSTERKRRDSPERKRD 664 Query: 633 RRRRRRRPAT---DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT---NHNLLENGAHGF 686 R R+R A+ D+ S +DS D ++ S LE+ Sbjct: 665 DSRDRKREASPNWKREDSPGRKRKDSANRKREDSQDKKIQDSKRQGYSAGKKLEDSPSKK 724 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 ++ D +S ++ R Sbjct: 725 LKDSDRKRQDSPAKRHDSPGRRRRDSPERKR 755 >gi|307166380|gb|EFN60517.1| Proactivator polypeptide [Camponotus floridanus] Length = 2140 Score = 40.0 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 8/183 (4%) Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD-SQAPSYDKNIECVWQDEA 602 RF S++ + Q + + ++ + +DE Sbjct: 1745 HRFSKSLSRTPSPFKKTEDIMAAAIKIKQTIKEDTKDESPKIGETNFAAGDVFPLKKDEK 1804 Query: 603 LLPIPK--SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 L K E + Q ++ S + ++ +R +R +TD D+ + Sbjct: 1805 SLKTTKLIVEDKKSTQKSLESSSKKPMEVVKKTKREKRDGSTDSEDS-----DGESKRKS 1859 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 T+ + + G + + + + + S K R Sbjct: 1860 RKLEKSKRSRKASTDEDKSDKSKAGSSSDSEDDKKHSDKNKKSRDRTDSTDDRSKDRKDS 1919 Query: 721 RRK 723 R++ Sbjct: 1920 RKR 1922 >gi|261392927|emb|CAX50512.1| IgA-specific serine endopeptidase (IgA protease) [Neisseria meningitidis 8013] Length = 1552 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%) Query: 502 SILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 R E + A + +++ ++K E A+ V Sbjct: 1044 EAEREARELATRQKAEQ--ERSSAELAR--RHEKEREAAELSAKQKV------------- 1086 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD---- 617 E+ + A+ + QA + E + L K+E+ + Sbjct: 1087 --EAEREAQALAVRRKAEAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQ 1144 Query: 618 -------------NIVSEESTGVIRKRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDS 663 EE + + +RR RR + DA + +N D+ Sbjct: 1145 KAEAEREAAELAKQKAEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDA 1204 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 D P D + + + E S Sbjct: 1205 SDYEEIPLDALEDEDVSESVDTSDKQPQDNTELHEKVETVS 1245 >gi|118382353|ref|XP_001024334.1| hypothetical protein TTHERM_00532110 [Tetrahymena thermophila] gi|89306101|gb|EAS04089.1| hypothetical protein TTHERM_00532110 [Tetrahymena thermophila SB210] Length = 1787 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 48/182 (26%), Gaps = 9/182 (4%) Query: 546 FGVSINVVIGIELADKLFYI---EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 + I + F I ++ Q + + P +++ E V Q++ Sbjct: 1004 NNIKIQIKQNQGQQPAQFQIQGPQQNQSNQIQKQQMQQQILKIEIPKLNQSSEPVTQNDK 1063 Query: 603 LLPIPKS------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + + + I+ +E K +++ ++R D + Sbjct: 1064 KTENESNIFKLVRPNPLNNSQPIIPQEEQVQNEKGKKKPQQRASKKKQDDDAEEQQNTPA 1123 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 D + + +N T+ + ES D + Sbjct: 1124 AKTKRIKKDTSASEENKKDQVDAQNKEKKQTKRTKKQKESDKQDKQESEGDKGDDLQLNK 1183 Query: 717 RW 718 + Sbjct: 1184 KQ 1185 >gi|327295118|ref|XP_003232254.1| hypothetical protein TERG_08932 [Trichophyton rubrum CBS 118892] gi|326465426|gb|EGD90879.1| hypothetical protein TERG_08932 [Trichophyton rubrum CBS 118892] Length = 224 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 3/98 (3%) Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 G R+ ++ +RR+ D+ +S + +D + G Sbjct: 68 EGGPRRSQKSPQRRQQRPSSRDSEGRQPKNSATESSRQQAASSGQDADEADEADEGEGRE 127 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + T ++ KTRW R Sbjct: 128 TSQRSKKSESERDGTTRKNKTDVEKQS---KTRWRMGR 162 >gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella melaninogenica ATCC 25845] gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella melaninogenica ATCC 25845] Length = 573 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 41/164 (25%), Gaps = 4/164 (2%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 K + +Q + + N + + + +D Sbjct: 405 DHQSHKDKKQGNNKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQKQQDNNPAATE 464 Query: 622 EESTGVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 + R + +++ R+P D+ ++ N + +P++ Sbjct: 465 GKPVNKKNNRQNKGKQQERQPKADNEKRNDRKPANNKGNAESTTNQQNKKPNNKRKKRNN 524 Query: 680 ENGAH--GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 P ++ S ++KK W R Sbjct: 525 RQRTPEDKSVRRSTKYDIREELPSTSNNESGLKALIKKPLKWLR 568 Score = 38.0 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 37/152 (24%), Gaps = 5/152 (3%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR--- 631 + + +I Q E+ L ++ + E + K+ Sbjct: 335 RTARADRDGKAITFVNEDDIYFFQQIESFLEKEVEKAQLPAELGEGPEYKSNGKPKKAGN 394 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + RRR+ + +N + N + G Sbjct: 395 SAKSRRRKDRDHQSHKDKKQGNNKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQK 454 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E + N ++ K + R+ Sbjct: 455 QQDNNPAATEGKPVNKKNNRQNK--GKQQERQ 484 >gi|134084006|emb|CAK43077.1| unnamed protein product [Aspergillus niger] Length = 1199 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 2/164 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 +E+ + + + + SQ +KN + Q K + E+++ Sbjct: 915 PSSALEQRANMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQE 974 Query: 621 SEESTGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +E +R+R + + + + ++ T+ Sbjct: 975 AERERKQRVAEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKR 1034 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + N P S+ + KK R +RR Sbjct: 1035 KKKRNEDDFINDGGDSPSRERSSEPDSDGEAAAAPKKRRRLERR 1078 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 34/172 (19%), Gaps = 16/172 (9%) Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 N R + + E + + + + K + Sbjct: 924 NMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQEAERERKQRV 983 Query: 593 NIECVWQDEALLPIPKSE------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 E E + + + E V + KR+++R Sbjct: 984 AEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKRKKKRNEDDF 1043 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 D D+ S D + P ++ Sbjct: 1044 INDGGDSPSRERSSEP----DSDGEAAAAPKKRRRLERRSGSKAQQSKYKSS 1091 >gi|121596721|ref|YP_990474.1| 60S ribosomal protein L19 [Burkholderia mallei SAVP1] gi|121224519|gb|ABM48050.1| 60S ribosomal protein L19 [Burkholderia mallei SAVP1] Length = 304 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 9/135 (6%), Positives = 29/135 (21%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ +P K + S + P K ++ + ++ Sbjct: 118 ERQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQA 177 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +++ +R+ P+ S + + + + Sbjct: 178 PSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAKRQAPSAK 237 Query: 686 FTENYDVSIPPVSTP 700 + Sbjct: 238 RQAPSAKRRSDIDRR 252 >gi|320545415|ref|NP_001097475.2| CG7971, isoform F [Drosophila melanogaster] gi|318069094|gb|ABW08438.2| CG7971, isoform F [Drosophila melanogaster] Length = 1655 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 37/159 (23%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + K S K + + E +S ++ Sbjct: 734 HRPKDEQQSVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSKEG 793 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +S++ G+ ++R R+R S S D + Sbjct: 794 QLSKDRQGLKERQRSNERKRSKERQPSKEKQRSRERQRSREPLQSKDRQRSKERQRSRER 853 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 A + S S ++S T+ Sbjct: 854 PAKEARPTRSPRERSSKSRDDRRHRSPTNASRKQKDDTK 892 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 33/127 (25%) Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + + + +S + ++ + S++ ++R R R + A Sbjct: 804 ERQRSNERKRSKERQPSKEKQRSRERQRSREPLQSKDRQRSKERQRSRERPAKEARPTRS 863 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 S S + + D T + V TP Sbjct: 864 PRERSSKSRDDRRHRSPTNASRKQKDDTKLSRNARFKSPAHSPEAPPKKSVPTPAFNPFK 923 Query: 707 SSSDPIV 713 ++ D + Sbjct: 924 AAEDTVN 930 >gi|221485353|gb|EEE23634.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2303 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 40/132 (30%) Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 +K E + + ++ + + + S R+R RRR ++D Sbjct: 331 EKADELPRGERRGGSVAEASRRAEGEKDRFSGGREETSRRRESPTGRRRLSSDSLRLPET 390 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 S ++ + D + E+ + + + + S+ Sbjct: 391 GRDRSSDSIGERGRRSPPRGKDDRDEPRREDDSGRGDNPPVGRRERSGSAQKNEARRSAT 450 Query: 711 PIVKKTRWWKRR 722 ++T+ + R Sbjct: 451 REEERTKTRRNR 462 >gi|326677257|ref|XP_686655.4| PREDICTED: LOW QUALITY PROTEIN: afadin [Danio rerio] Length = 1816 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/190 (10%), Positives = 48/190 (25%), Gaps = 8/190 (4%) Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNT--------GHKVGSDSQ 586 KR + E + + I ++ E+ + E+ + + S Sbjct: 1501 KRDAREKLEKQQQLHIVDLLDKEIQELQAKPERTAEDNDRLRKLMLEWQFQKRLQESKQN 1560 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 ++ + ++ ++E +QD + ++R R + + Sbjct: 1561 EEDEEEEDDEDVDTTLIMQRLEAEKRARLQDEERRRKQQLEEIRKREAEERAKQEEERRW 1620 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + Y E T + P + + + Sbjct: 1621 REEERARREADEKRRQEEEYYTRLEAERRRQHEEAERKLPTPDETGLYRPPLPRDYQPPS 1680 Query: 707 SSSDPIVKKT 716 SS P T Sbjct: 1681 PSSAPATNHT 1690 >gi|312078677|ref|XP_003141842.1| TK/FER protein kinase [Loa loa] gi|307762993|gb|EFO22227.1| TK/FER protein kinase [Loa loa] Length = 1024 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 7/138 (5%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G D ++ + + +P + + E Sbjct: 368 GDKHGINREKMKIRSYDRKSDREMRRKYDDKRTSDEAEVPNETENKKFIMGSENIEEQRN 427 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +++ R T+ + + S + DS D+ + N +N G T Sbjct: 428 EKRKGDR-------TERRKHEMEGRIRSNKEKRRDSIDLENRGKNTNNEKSDQNDRQGRT 480 Query: 688 ENYDVSIPPVSTPEMESS 705 P + Sbjct: 481 NKSKREQPKRKHESSQER 498 >gi|241267478|ref|XP_002406426.1| conserved hypothetical protein [Ixodes scapularis] gi|215496883|gb|EEC06523.1| conserved hypothetical protein [Ixodes scapularis] Length = 432 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 1/103 (0%) Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 D S E+ + + +G R++ RR P + S S+ Sbjct: 6 ESDAEDTQAGTSARTEERRSRSRTRTPSGSPRRKAASPRRASPVKRRSE-RTRSGASASA 64 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 S P+ ++ + ++ A + + + Sbjct: 65 RKKARSPSRDQSPAKRSSRSPVKRSARKSSGSSPTKKAKKAAT 107 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 25/109 (22%), Gaps = 2/109 (1%) Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 + + + E + + + RR +RR Sbjct: 2 SSVPESDAEDTQAGTSARTEERRSRSRTRTPSGSPRRKAAS--PRRASPVKRRSERTRSG 59 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 A + + D S S + +G+ + + P Sbjct: 60 ASASARKKARSPSRDQSPAKRSSRSPVKRSARKSSGSSPTKKAKKAATP 108 >gi|194909535|ref|XP_001981966.1| GG12335 [Drosophila erecta] gi|190656604|gb|EDV53836.1| GG12335 [Drosophila erecta] Length = 647 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 39/155 (25%), Gaps = 1/155 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + Q + +D P K + +S + ++ Sbjct: 267 RRRRDQDSTPPRRRKDADQSPPRRRKADDPSPVRRGRKDSDQSPPRKRRGNDQSPVRKRR 326 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + RRRR + + +D + + + + Sbjct: 327 DSDQSPPRRRRDDKQSPPRRRRNSDQSPPRRPKDEDQSPPRRKRDFDQSPLRKRDKSPRR 386 Query: 687 TENYDVSIPPVSTPEMESSNSSSD-PIVKKTRWWK 720 + D S P +S + +K+RW K Sbjct: 387 RRDSDQSPPRNHRSREQSPPPRNRFKEERKSRWAK 421 >gi|67923326|ref|ZP_00516809.1| Ycf66, N-terminal [Crocosphaera watsonii WH 8501] gi|67854849|gb|EAM50125.1| Ycf66, N-terminal [Crocosphaera watsonii WH 8501] Length = 290 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 41/160 (25%), Gaps = 3/160 (1%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + + + + + T + + S D + P + Sbjct: 128 ISRNNPRLEGYADPRSNRSYSQEETRTRKPRRRPSSSNDPYGDRPSPRRKPSPTRPTNDN 187 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD---SFDMYME 669 D D+ ++R R R + + N S + Sbjct: 188 YDAWDSRDDMWEDRPKKRRPSRPRPENSSPETSSGSPRKRRPRPSNPERRYSSSVEESPT 247 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 P+D ++ ++ S P S+SS+ Sbjct: 248 PTDYVDYQPIDTPESPRKRGSRPSKPENDYDSDRPSDSSN 287 >gi|195166102|ref|XP_002023874.1| GL27309 [Drosophila persimilis] gi|194106034|gb|EDW28077.1| GL27309 [Drosophila persimilis] Length = 2185 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 9/209 (4%) Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELA--DKLFYIEKG 568 Q ++ T ++ L + R EAR + I +++ + + ++ Sbjct: 1528 AKQVEPKQLVAMTPEELASQELAKWREE----EARHQLEIIEKSELDMLSCTQNYVVKTH 1583 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + ++ K E+ E + + S+E Sbjct: 1584 KGEEVIATKVDVTLPNVESILDKKLTSQNSDPESASKDISLEHSSSKEKSGSSKEKRHKS 1643 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY---MEPSDITNHNLLENGAHG 685 KR R+R R + + N ++ + E + + + Sbjct: 1644 HKRHHPRKRSRSRSSSQTRSLEKRHRRHHNDVETGGERKHRHREKQHSKDRDERISSPSK 1703 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVK 714 E D S P + E + +S+ + K Sbjct: 1704 KREENDRSFLPKNVTEKKPDEASASALAK 1732 >gi|121719657|ref|XP_001276527.1| rRNA maturation protein (Nop14), putative [Aspergillus clavatus NRRL 1] gi|119404739|gb|EAW15101.1| rRNA maturation protein (Nop14), putative [Aspergillus clavatus NRRL 1] Length = 913 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 49/187 (26%), Gaps = 7/187 (3%) Query: 516 AHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIEKG 568 + + V + +KR + E E + V V + + E+ Sbjct: 77 SKTTAARSRPGVTKSMGEEKRRQTLLREMERKNKVGGIVDRRFGEDDPTMTPEERAAERF 136 Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + + D + + Q + + +D + E+ + Sbjct: 137 ARESQKKLRKESMFNLEEDEEDDFKLTHMGQSLSFGDGAIQDDFQDDVGGLEEEDQSDSE 196 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R+R+R + Q S + M+ + E Sbjct: 197 SPRKRKRDMDEDEELEDYTYDDDEEGEDQPERKKSKNEVMKEVIAKSKFYKLERQKAKEE 256 Query: 689 NYDVSIP 695 + D+ Sbjct: 257 DDDLREE 263 >gi|329116619|ref|ZP_08245336.1| hypothetical protein SPB_1013 [Streptococcus parauberis NCFD 2020] gi|326907024|gb|EGE53938.1| hypothetical protein SPB_1013 [Streptococcus parauberis NCFD 2020] Length = 262 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 33/160 (20%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ 616 F +E +P + S S ++ Sbjct: 102 NFGCAYFVLENPAPQEIKFEEERAPRRKRSNRSNKSRTNSNDTKGTDSRTNDSRKPNAVK 161 Query: 617 DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 +S ++ RR T+ S Q + + + E Sbjct: 162 AESKKSDSRKSDSRKPNSRRSNSRKTESKVDETRKPESPKQKSANKANNPKNENRAKDKQ 221 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + P+ + + I KK Sbjct: 222 VFSRKKRQEKNPGRNRLSERSNIPKESNDKTGHFIIRKKD 261 >gi|224130906|ref|XP_002328405.1| predicted protein [Populus trichocarpa] gi|222838120|gb|EEE76485.1| predicted protein [Populus trichocarpa] Length = 611 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 14/172 (8%), Positives = 42/172 (24%), Gaps = 8/172 (4%) Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + +L + I + S + P + + + KS+ Sbjct: 33 IEASTKLQSE---INNNGDGNHVDALTKGQSSRRRTPKSLRAKSKTIEKPSANNSLKSKK 89 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + + + R R + ++ S + I+ ++ Sbjct: 90 AKSSPKSQGRNRKKNKDIIQGKGERNRNEHGEANNLNSSEKNVSKKERIEKGQEIRKNQE 149 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N + ++ + + + K+ W +K Sbjct: 150 RFVGSNKGQKNQKSGEKHGVLVDKSSRNKK-----NKGKLDEKEKNGWDEKK 196 >gi|328789068|ref|XP_392573.4| PREDICTED: transcription elongation regulator 1 isoform 1 [Apis mellifera] Length = 1201 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 30/99 (30%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++K S + + + + + + E P + + S+ Sbjct: 892 RVDKDSSKDKKRRSEVPSEENGKEKKDAVSEKESGEIEDNDEKPSKKENDKENAEDQSDS 951 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 +++R R RR + + V +++ D Sbjct: 952 EEDREKQKRERERRAEASLREREREVQRTLATHLRDRDK 990 >gi|24650807|ref|NP_733246.1| Moca-cyp, isoform A [Drosophila melanogaster] gi|7301671|gb|AAF56786.1| Moca-cyp, isoform A [Drosophila melanogaster] Length = 970 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 2/153 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P Q + + DS + + E W+D S + + + + Sbjct: 635 PSQRRQLSPGRKRQDSPSKKRPNSTERKWRDSPERKRDDSHDRKREASPNWKRDDSPARK 694 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFT 687 ++ R+R + D S +DS + SD + + + G Sbjct: 695 RKDSANRKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKDSDKKRQDSPVKRQESPGRK 754 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +P+ +S + + + + Sbjct: 755 RQDSPERKRRDSPDRRRKDSPARRRQESSGRRR 787 >gi|46138495|ref|XP_390938.1| hypothetical protein FG10762.1 [Gibberella zeae PH-1] Length = 622 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 42/157 (26%), Gaps = 7/157 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS-------ESLEDIQDN 618 E+ + + DK E D++ K E + Q+ Sbjct: 172 EQQPAETEKQPKRKRGRPAQEKDQNDKEPEQEVADDSEKQRRKKNTKGNQVEQPDGQQEE 231 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + E G R++R+R+ P + + Q+ + DI N Sbjct: 232 ELEPEPEGAQPAPRKKRQRKAPEPEPEPEDQEPEEEEQQSRRSPRNSSSNDREDINNKGR 291 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ++ P + P K+ Sbjct: 292 KAGKSKKTSQENTEDQQPDDATKKRERRKGGKPQAKE 328 >gi|317145949|ref|XP_001821189.2| telomere length regulator protein (Rif1) [Aspergillus oryzae RIB40] Length = 1722 Score = 40.0 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 44/179 (24%), Gaps = 28/179 (15%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + T + + + + EA LP + EE + Sbjct: 1384 SDDMETQIASQLEQDLEFAVDSDKPDQEQEAGLPFEPPSEPPMTRKRKRDEEIASTPSSK 1443 Query: 632 RRRRRRRRPATDHHDAGVVSD-----------------------VSSIQNVIDDSFDMYM 668 RRR R A + +A + + + + Sbjct: 1444 ERRRSTRHSAKEIDNADLEEPRSTRSKKSTSSSNAQQVASSPAGSAPKKQKLHAKGAADD 1503 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVST-----PEMESSNSSSDPIVKKTRWWKRR 722 P+ + + L G +E D S P ++ + W++R Sbjct: 1504 APASLPDLQLGNPGTTKVSEATDSQKRRSSRLSGHSPLAVPREDATPRKSPRKGRWRKR 1562 >gi|195382292|ref|XP_002049864.1| GJ21824 [Drosophila virilis] gi|194144661|gb|EDW61057.1| GJ21824 [Drosophila virilis] Length = 2677 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/197 (11%), Positives = 49/197 (24%), Gaps = 29/197 (14%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE-- 613 E + + N + + +N + +++ +E+ E Sbjct: 1235 PEQESADHDVHREQTQSETANEEPQQEEKTADEDQPQNEMEIAKEQQQTENEAAENNEQQ 1294 Query: 614 ---DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA----------------------- 647 + E ++ + + D+ ++ Sbjct: 1295 HNMENSHENPKPEKDASDDGQQHSEEQPKGDNDNDNSCQTETTGVTGNVDDAGDDEESCT 1354 Query: 648 GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 VS ++N D+ E+ A N PP S+ Sbjct: 1355 DSVSSNRKLKNREMDASQPDAAAKRKKTLQAKESHASKGASNITAMAPPAPPKRELSTGK 1414 Query: 708 SSDPIVKKTR-WWKRRK 723 + P+ + KRRK Sbjct: 1415 AGKPLQTDVQPTQKRRK 1431 >gi|24414611|gb|AAN39118.1| peptidylprolyl cis-trans isomerase [Drosophila melanogaster] Length = 968 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 2/153 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P Q + + DS + + E W+D S + + + + Sbjct: 633 PSQRRQLSPGRKRQDSPSKKRPNSTERKWRDSPERKRDDSHDRKREASPNWKRDDSPARK 692 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LLENGAHGFT 687 ++ R+R + D S +DS + SD + + + G Sbjct: 693 RKDSANRKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKDSDKKRQDSPVKRQESPGRK 752 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 +P+ +S + + + + Sbjct: 753 RQDSPERKRRDSPDRRRKDSPARRRQESSGRRR 785 >gi|332845493|ref|XP_003315056.1| PREDICTED: putative NPIP-like protein LOC613037-like [Pan troglodytes] Length = 308 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/168 (8%), Positives = 33/168 (19%), Gaps = 11/168 (6%) Query: 554 IGIELADK-LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 L P + + + P PK Sbjct: 143 ADDNLKTPPECLTTPLPPSPPPSAPPPSPPPSADDNLKTPPLATQEAEAEKPPKPKRPRA 202 Query: 613 EDIQDNIVSEESTG-----VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 D++ + + ++ +R+R D + +D S Sbjct: 203 ADVETSSPEPKRRRVGDVEPSSRKPKRQRAGD-----VDPSSRKPKRRRADDVDPSSSKP 257 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 ++ D S + SS ++ Sbjct: 258 KRRRADDVEPSSRKPKRRRADDVDPSSSKPKRRRADDVEPSSRKPKRR 305 >gi|18698322|emb|CAC83858.1| synemin [Homo sapiens] Length = 1251 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 45/183 (24%), Gaps = 10/183 (5%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKN 593 E +G +++ + + + + + Q D++ ++ Sbjct: 410 ENSYGKAVSSQTNVRTFSPTYGLLRNTEAQVKTFPDRPKAGDTREVPVYIGEDSTIARES 469 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 A + S E E + R R R + Sbjct: 470 YRDRRDKVAAGASESTRSNERTVILGKKTEVKATREQERNRPETIRTKPEEKMFDSKEKA 529 Query: 654 SSIQNVI-DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 S +N+ ++ + E +H + E + +E S + Sbjct: 530 SEERNLRWEELTKLDKEARQRESHQMKEKAKENDSLKEKSVREREVPISLEVSQDRRAEV 589 Query: 713 VKK 715 K Sbjct: 590 SPK 592 >gi|326912313|ref|XP_003202498.1| PREDICTED: caprin-2-like [Meleagris gallopavo] Length = 1160 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 60/218 (27%), Gaps = 11/218 (5%) Query: 508 EEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEK 567 E + D+ QK+ T+ +E+R + E+ Sbjct: 357 EAECARKQEPPKSWEMLVDIEEQEQKQKKETLKPWESRVRQQETKRPDSPKHWEAHVKEE 416 Query: 568 GSPVQALVN-----TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + + + ++ + E + + + E + Q++ Sbjct: 417 EQKREPTKSWETRVEEEQKKQEAPKAWVARVREEQESSKPWIAKVREEQDQKKQESPKPW 476 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + + +R++ +P S + + + + EP + Sbjct: 477 VAKIREDQEQRKQESPKPWVTKAKEEPEQKQESPKPWVTQTRE---EPEQKKQEPVKSWE 533 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 H E PV + +++ +P KK + Sbjct: 534 VHVREEPEQKKQKPV---KAWAAHVREEPEQKKQETRE 568 >gi|322706004|gb|EFY97586.1| hypothetical protein MAA_06811 [Metarhizium anisopliae ARSEF 23] Length = 794 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/212 (8%), Positives = 48/212 (22%), Gaps = 1/212 (0%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R Q + V + I ++EA+ + D Sbjct: 395 REALLAAAQRNVKAQLHGMDEKVYQETGRANPSLITDWEAKAQKAAQAQHEARTDDSKGK 454 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I+ G + + + S P D + + + + E + E++ Sbjct: 455 IDIGGGMFMTQEEINAIASKKIQPVLDDINDKAETERERQEVLRMEEQARREQAEK-EKA 513 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 K ++ + + + + + ++ + Sbjct: 514 RDRETKEIAKKDKEQEKQEEKAKKLQEKMDEKARKDEERATKAEQKRQAKEEKRRSKHGP 573 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E+ + +T Sbjct: 574 AVATTSSPHQGEHTQEADENPAGREEETRGET 605 >gi|237835629|ref|XP_002367112.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|211964776|gb|EEA99971.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|221506214|gb|EEE31849.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 2303 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 40/132 (30%) Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 +K E + + ++ + + + S R+R RRR ++D Sbjct: 331 EKADELPRGERRGGSVAEASRRAEGEKDRFSGGREETSRRRESPTGRRRLSSDSLRLPET 390 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 S ++ + D + E+ + + + + S+ Sbjct: 391 GRDRSSDSIGERGRRSPPRGKDDRDEPRREDDSGRGDNPPVGRRERSGSAQKNEARRSAT 450 Query: 711 PIVKKTRWWKRR 722 ++T+ + R Sbjct: 451 REEERTKTRRNR 462 >gi|170028047|ref|XP_001841908.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167868378|gb|EDS31761.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 377 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 3/95 (3%) Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RKR+ R++ R + Q + + + + N T Sbjct: 215 RKRKSRKQETRNKKQETRNKKQETRNKKQETRNKKQETRNKKQETRNKKQETRNKKQETR 274 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N + E+ N + KK +++ Sbjct: 275 NK---KQETRNKKQETRNKKQETRNKKQETRNKKQ 306 >gi|297735965|emb|CBI23939.3| unnamed protein product [Vitis vinifera] Length = 297 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 38/125 (30%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + V V + A + + E +++ +++ +E Sbjct: 35 HEEEHQVQQRETVVRATGARRMRRRPASGASTSSAPTATVEEIVDESDEDVAVDEYEAKH 94 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K+R R+R+ R A D + Q+ ++ E + L E + Sbjct: 95 SKKRERKRQEREAQRQADEAARESRLTKQDRYAETRRRKDEEREAKERQLEEEAKAQKAK 154 Query: 689 NYDVS 693 + + Sbjct: 155 EDEAA 159 Score = 38.0 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 2/129 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES--TG 626 + + + + + P E + D D V+ + Sbjct: 34 EHEEEHQVQQRETVVRATGARRMRRRPASGASTSSAPTATVEEIVDESDEDVAVDEYEAK 93 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +KR R+R+ R +A S ++ + E E A Sbjct: 94 HSKKRERKRQEREAQRQADEAARESRLTKQDRYAETRRRKDEEREAKERQLEEEAKAQKA 153 Query: 687 TENYDVSIP 695 E+ ++ Sbjct: 154 KEDEAAALE 162 >gi|115926443|ref|XP_001180249.1| PREDICTED: similar to Egfl6-prov protein [Strongylocentrotus purpuratus] Length = 1045 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 23/107 (21%), Gaps = 2/107 (1%) Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 G + +RR R R T+ G + S D Sbjct: 813 PRGDKVETKRRRRGDREETKRRPRGERVETERRPRGER-ITDEEETERRPSGDREETERR 871 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEME-SSNSSSDPIVKKTRW 718 + P E E + + ++ +W Sbjct: 872 TSGDREENERIPRGDRLESERRPRGDRGETEWKPSGEREESERRPKW 918 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 18/182 (9%), Positives = 44/182 (24%), Gaps = 28/182 (15%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPS--YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 E+ + + +++ + + E + + + L + + S E Sbjct: 849 ERITDEEETERRPSGDREETERRTSGDREENERIPRGDRLESERRPRGDRGETEWKPSGE 908 Query: 624 STGVIRKRR------------------------RRRRRRRPATDHHDAGVVSDVSSIQNV 659 R+ + R R A+ + + Sbjct: 909 REESERRPKWARKKETERRRRGDREETEWRTSVDREETERRASGEREETERRPSGDQEKT 968 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E + +EN E + P + E + + ++T W Sbjct: 969 ERKPSGEREETKRRPRGDRVENEWRPRGERVETDRRPRG--DREETEWRARGDQEETEWR 1026 Query: 720 KR 721 R Sbjct: 1027 AR 1028 >gi|317178641|dbj|BAJ56429.1| 30S ribosomal protein S1 [Helicobacter pylori F30] Length = 552 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEVDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + Y + + ++ G I+ Sbjct: 420 VIKVKILKINKKDKKISLSTKHLVTSPTEEFAQKYKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|301767352|ref|XP_002919096.1| PREDICTED: biorientation of chromosomes in cell division protein 1-like [Ailuropoda melanoleuca] Length = 3240 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 54/221 (24%), Gaps = 13/221 (5%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +G ++ S + + + H+ + ++R R S Sbjct: 2909 SGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEEEERQMPKRKRKRHYPS 2968 Query: 550 INVVIGIELADKLFYIE-------KGSPVQALVN------TGHKVGSDSQAPSYDKNIEC 596 + IE + P K S + + + E Sbjct: 2969 SEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSKTSSKTNSTASRAMDEK 3028 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 K+E +D E+ +I+++R R R+ T + I Sbjct: 3029 DEYSSGEAAGEKAEQNDDDNIKSQEEDQPVIIKRKRGRPRKHPLETALKTKEDCKTDTGI 3088 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 V + + N + + D S Sbjct: 3089 VTVEQPPPGGKPKSTQTDESNKETTTQQERSVSNDDSEEKT 3129 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 45/148 (30%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + P + + S S+A ++ + +E+L D +E Sbjct: 2893 RREPFLVNESLDNVKNSGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEE 2952 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R+ +R+R+R + + DV + EP D N + Sbjct: 2953 EERQMPKRKRKRHYPSSEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSK 3012 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK 714 T + S + E + +S K Sbjct: 3013 TSSKTNSTASRAMDEKDEYSSGEAAGEK 3040 >gi|189091796|ref|XP_001929731.1| hypothetical protein [Podospora anserina S mat+] gi|188219251|emb|CAP49231.1| unnamed protein product [Podospora anserina S mat+] Length = 830 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 5/171 (2%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + +I + S D+ L +S Sbjct: 352 ESSDHRSPEREHITRLRTAPPETPRSRAQRDILNNDSNMSEGLP---DKPLTRKTSLDSA 408 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + S I+ R +R + + + + + Sbjct: 409 TVSRRSAGASLSAARIKSTPTRSGNKRKTPQLGNNSDRARPRRSSSPVLSESSSSSFETP 468 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + I V + S +S D K+ + WK+RK Sbjct: 469 ARRPSGQHKRSTVERQREASLI--VDSIIQPSESSEDDEPTKEVKSWKKRK 517 >gi|157123183|ref|XP_001660048.1| hypothetical protein AaeL_AAEL009430 [Aedes aegypti] gi|108874487|gb|EAT38712.1| predicted protein [Aedes aegypti] Length = 5301 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 54/636 (8%), Positives = 152/636 (23%), Gaps = 46/636 (7%) Query: 86 RQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDV 145 ++ L+E + + E + + E ++ + E + + Sbjct: 2076 KEKELEEQRRKEKELEDQRRKEKELEEQRRKEREEAERREREEHERQLQREQELEKERQL 2135 Query: 146 VSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGR 205 E+ + E K+ + + + + + +T + + Sbjct: 2136 QVEREEREKAEREKWQKQEEARMAKESLKNEFESCDSFTNDHGSDRIDRVNSTDSNSPSQ 2195 Query: 206 YSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDF 265 + ++S+ S +K+ G K + D Sbjct: 2196 ATSKRRHSSQDSNDSPAEDANAMKKHKHNNIGERRDSGKDG-----KREKHHKSHNRSDK 2250 Query: 266 EYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKDFM 325 + ++S L D + + ++ K + D Sbjct: 2251 SSKSSSGSSTSSDKVHSHVNALCSVGK-------HDNHDEKQQFLLEERRKEISFSTDGD 2303 Query: 326 KLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSIDVN 385 + + + + +Y + H ++ + + + + Sbjct: 2304 SMQLSHHPKKKDRYHEKHKSKKDRDASRDKENTQNANFPMDYIDHRSTSDEDE----HAR 2359 Query: 386 SGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKE 445 +D + + + E+ EE + R A +++ R Sbjct: 2360 LQHRKERKSSKDYSRRFHGESGEEYKKYDRKLSRA-------ESSADEEGRRK------- 2405 Query: 446 SLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILR 505 + R + S+ + + Y + ++ ++ R Sbjct: 2406 KNQTSNIRTKTTNSSD------TDDSDEPKKHSIFDIPDDGPNISMYDKVKARSCKNMQR 2459 Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 EE ++ + + + E G++ + I + K Sbjct: 2460 QEEEKKIKAKFSKLK----QSRAKREGKNRSKSWDEDSDTDGMNSDTTINSKYNHKDHL- 2514 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + K +E I + + + S + Sbjct: 2515 --NKSGTITTSEDDDHLPSTPRMRRPKEPLATDSEEESNRIRSNRDRLNDLCDDESSDGD 2572 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ R RR +D + D + + T + + Sbjct: 2573 HASKRPPRTPRRH---SDEKKMSRKNSTRIHSETDSDGHHSVVRKTPTTPNCESKPEPSD 2629 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ + + E S I +TR Sbjct: 2630 VQMDHITIKQEMKSEEDTQEGVSKVEIKMETRVQPP 2665 >gi|73988849|ref|XP_534056.2| PREDICTED: similar to SH2 domain binding protein 1 [Canis familiaris] Length = 1173 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 7/134 (5%) Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR------RRRPATDH 644 + DE + S D +N S +R RR+ +P+ Sbjct: 1035 RNSNSNSDSDEGERRKKHASSESDSDENQNKSGSEAGSPRRPRRQESDEDSDSDQPSRKR 1094 Query: 645 HDAGVVS-DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 +G D S+Q+ S M+ + E+ + ++N + E E Sbjct: 1095 RPSGSEQSDNESVQSGRSRSGGSDMDSRPASPSAESEHDSERGSDNEGSGQGSGNESEPE 1154 Query: 704 SSNSSSDPIVKKTR 717 SN+ + + Sbjct: 1155 GSNNEASDRGSERG 1168 >gi|116180704|ref|XP_001220201.1| hypothetical protein CHGG_00980 [Chaetomium globosum CBS 148.51] gi|88185277|gb|EAQ92745.1| hypothetical protein CHGG_00980 [Chaetomium globosum CBS 148.51] Length = 916 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/189 (7%), Positives = 54/189 (28%), Gaps = 13/189 (6%) Query: 513 QYTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYI 565 + + + + ++R +VE + R V + ++ + + Sbjct: 78 ANDKATMSIKGRPGLAKAVGEERRRQTLLVEMQRRNKVGGLIDRRFGEDDPNMSLEEKMM 137 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYD----KNIECVWQDEALLPIPKSESLEDIQDNIVS 621 E+ + Q + + + ++ D+ K + E+ + Sbjct: 138 ERFTREQQRNHKKSSMFDLEEDDEPMGGLTHMGRPLFDDDEDQVPVKDDFDEEDLASGDE 197 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT--NHNLL 679 +++ R+ +R+RR + + + + ++ + Sbjct: 198 SDNSRAERRMLKRQRRAEAGEEQEEEDDDDQPERKKTKKEIYEEIISKSKQHRYERQAAK 257 Query: 680 ENGAHGFTE 688 + + E Sbjct: 258 DEDSELRAE 266 >gi|119480521|ref|XP_001260289.1| mRNA splicing factor RNA helicase (Cdc28), putative [Neosartorya fischeri NRRL 181] gi|119408443|gb|EAW18392.1| mRNA splicing factor RNA helicase (Cdc28), putative [Neosartorya fischeri NRRL 181] Length = 1118 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/176 (8%), Positives = 37/176 (21%), Gaps = 19/176 (10%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + ++ + + +D+ + + + G Sbjct: 91 RLVDMEPDLTDAASSLGPQNVEAERDKQRRREKDKDRSRGRSEKEDSRRKRDRSRSRDEG 150 Query: 627 VIRKRRRRRRRRRPATDHHDA---------------GVVSDVSSIQNVIDDSFDMYMEPS 671 ++R ++ RRR D + D D P Sbjct: 151 SRERQRSKKLRRRAVDDFEERWGDEEIPDDDYEDGGEEGQDFDESPPKRTRLEDGSASPR 210 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW----KRRK 723 + L D+ + + + + R RR+ Sbjct: 211 STASDELDPETKKELERKRDLEERDELAKRLAKKDDGKSKKIVEDRTRTSEAARRR 266 >gi|328771636|gb|EGF81676.1| hypothetical protein BATDEDRAFT_87629 [Batrachochytrium dendrobatidis JAM81] Length = 297 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 1/155 (0%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV L + Y + E + + G Sbjct: 81 PVDDLESPFKSDLQSPAGGIYLHDEEEPSTSAPTPQRKVRHRPYVVNMASKRKPKLGKAS 140 Query: 630 KRRRRRRRRRPATD-HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 KR + R ++ ++ D S + + P D Sbjct: 141 KRPKNRSTKQKVSEYPEDTPTKQRTSRRPKNTPTNQKVSEYPEDTPTKQRTSKRLKNTPT 200 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N VS P TP + ++ + +RRK Sbjct: 201 NQKVSEYPEDTPTKQRTSKRPKNTPTSQKVSERRK 235 >gi|322796188|gb|EFZ18764.1| hypothetical protein SINV_10047 [Solenopsis invicta] Length = 1200 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 14/161 (8%), Positives = 41/161 (25%), Gaps = 6/161 (3%) Query: 562 LFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 F I ++ + + S + + + + D + Sbjct: 282 EFDILDEIITSNHITPVALEQAKASASEDSQDYSFDIEPRFSDDESIEDTFTYDPNVSEK 341 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E T + ++ ++ + D N I + + DI +++ + Sbjct: 342 KSEQTEDVNEKEKKNLQHEEIDTKDKQTSNKD-----NKIHSNHHHDAKTGDIKSNDRSK 396 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + + + S K+ R Sbjct: 397 EHKTSDSRKFSEKREDAARQDTDKEKHQSRDKNKEKDSRDR 437 >gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] Length = 717 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 8/48 (16%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGG--NRHGFLPFLEI 74 E ++ G IYL KV R+E AFV G + G + E+ Sbjct: 613 IEDIVREVQVGEIYLGKVKRIEKFG---AFV--GLFSGKDGLVHISEL 655 >gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] Length = 717 Score = 40.0 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 30 FESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEI 74 E ++ G IY KV RVE AFV+ + G + E+ Sbjct: 613 IEDIVREVQVGEIYEGKVKRVEKFG---AFVELFSGKDGLVHISEL 655 >gi|320588547|gb|EFX01015.1| KAP-like kinetoplast-associated protein [Grosmannia clavigera kw1407] Length = 893 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 21/246 (8%), Positives = 58/246 (23%), Gaps = 10/246 (4%) Query: 469 RQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVV 528 R++ + T + + + + A + R+ +E + +D Sbjct: 288 RRQQMEDAIRQTAQAEFARQLEASNKEREEQAKELERAKKEADRLAR-ERMEAEKRADEE 346 Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 + + +E EAR + E+ + + Sbjct: 347 KRIQQAESIKRIEMEARARMEAERRADE---------ERRKREAEVAARVEQEARSKIEA 397 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 E ++ + + E+ I+ ++E R + Sbjct: 398 ERRAEEERRKREAEVTARVEQEARSRIEAERRADEERRKREAEVAARVEQEARAKVEAER 457 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 V + + S + + + + +E+ + Sbjct: 458 VAELERRKREAEMTARVEQEARSRMEAERRADEERKKREAEVAARVEQEARARVEAERRA 517 Query: 709 SDPIVK 714 D K Sbjct: 518 EDERRK 523 >gi|302674427|ref|XP_003026898.1| hypothetical protein SCHCODRAFT_114015 [Schizophyllum commune H4-8] gi|300100583|gb|EFI91995.1| hypothetical protein SCHCODRAFT_114015 [Schizophyllum commune H4-8] Length = 486 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 7/126 (5%) Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 P ++ Q +++ G +++R +R+ +D +A V + + + Sbjct: 183 APATPAQRSYPGQKAHRHDKNKGATKRKRAAKRKVAADSDDDEAEVAEPEPARKRTRSQT 242 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE----MESSNSSSDPIVKKTR-- 717 + A G + V E S +V R Sbjct: 243 KAAASTSKGKGRAKAGPSSARGRRGRKAATPSDVEEEEEAEERSQPESEERDVVPPVRFR 302 Query: 718 -WWKRR 722 W RR Sbjct: 303 VDWDRR 308 >gi|58263296|ref|XP_569058.1| Pol II transcription elongation factor [Cryptococcus neoformans var. neoformans JEC21] gi|134108682|ref|XP_776994.1| hypothetical protein CNBB5210 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259677|gb|EAL22347.1| hypothetical protein CNBB5210 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223708|gb|AAW41751.1| Pol II transcription elongation factor, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1186 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 40/149 (26%), Gaps = 1/149 (0%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ + + ++ ++++ ++ +EE Sbjct: 946 RAEEQARIQAAEEARQAELRIKAEEIAEQRRKAREEAQAWQEELAARQAEEEARRAAIVE 1005 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 +R+RR+ D + G + + + + + + Sbjct: 1006 KRKRRKEGIADSGEDGEGEGRKREKKPRKKKTKEGKKGRKVRSKSEVGTTDEEEEARETG 1065 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 T + S+ ++K R +R Sbjct: 1066 DDEDEETSRARKAKST-LAMLKAKRKARR 1093 >gi|321265754|ref|XP_003197593.1| hypothetical protein CGB_N3080W [Cryptococcus gattii WM276] gi|317464073|gb|ADV25806.1| Hypothetical protein CGB_N3080W [Cryptococcus gattii WM276] Length = 988 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 58/245 (23%), Gaps = 10/245 (4%) Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL 529 + + E G ++ + AL+ R EE + A + V Sbjct: 734 PEVGPLMWEWWKVEL------GDMKERVEKALTAARKREEEPQKEAAKE--SKKGLESVE 785 Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 L ++ + E S + G + F IE V+ V + + + Sbjct: 786 ELESRLKKLDSRLEEDDSRSGGGMRGGKTLMIEFSIENVQVVKRRVEKIATARENGKRKA 845 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 E DE P + + + K R R+ GV Sbjct: 846 DVIAAEDTDDDEPASSKPSGRFDKRAKRDGRDGRDGREGSKGDFRDRQGGKFGKDRFKGV 905 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + + + ++ S+ V Sbjct: 906 QNGQRRDHSDRGGRNERGGRNDRGDRPGQVQPRQPRR--RDQKSVDQVKKDVKTKDAGEK 963 Query: 710 DPIVK 714 I K Sbjct: 964 RGIEK 968 >gi|309358536|emb|CAP34004.2| hypothetical protein CBG_15828 [Caenorhabditis briggsae AF16] Length = 1458 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 16/201 (7%) Query: 531 LLNQKRATIVEYEARFGVSINVVI------GIELADKLFYIEKGSPVQALVNTGHKVGSD 584 +L KR + ++ + + +V L E P + + Sbjct: 545 ILKTKRNALPDFSSASKRAKLLVPSIVKPSDPNLDSAASAEEAPGPSKLSEGKSERQTGQ 604 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST---GVIRKRRRRRRRRRPA 641 P + E P + ++ + ++ ++R R R+ + Sbjct: 605 EAVPENQEASTVPVDREISGPGDQGSEEQESEGQGPKDQEQVIPIPAKRRSGRPRKEQNQ 664 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 D I+ + +E N N + N + + S P + Sbjct: 665 NLEDKEPEARDADFIEPL-------DLEIPATRNANSINNSKQALAKQAEASEAPAESAP 717 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 ++K+ W R+ Sbjct: 718 APKPAYGPHAVIKEIPEWIRK 738 >gi|221044634|dbj|BAH13994.1| unnamed protein product [Homo sapiens] Length = 557 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 30/135 (22%), Gaps = 5/135 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + AP + + P+P S + ++E+ Sbjct: 424 DDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEK 483 Query: 629 RKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ +R+R P G V + + +E Sbjct: 484 PRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRWRAADVEPSSPERKRRRVGDVEPS-R 542 Query: 685 GFTENYDVSIPPVST 699 + P S Sbjct: 543 KPKRRRAADVEPSSP 557 >gi|325569585|ref|ZP_08145632.1| hypothetical protein HMPREF9087_1921 [Enterococcus casseliflavus ATCC 12755] gi|325157141|gb|EGC69306.1| hypothetical protein HMPREF9087_1921 [Enterococcus casseliflavus ATCC 12755] Length = 347 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 35/142 (24%), Gaps = 7/142 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + +T + + + P K + + + ++ Sbjct: 20 REKKRDQSEDTPRNPRIEKFQAQGKQASPSSGKKRPKKPTQKEPTGQAPVKKKRKKAAST 79 Query: 627 VIRKR-------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 R + +++ R A+ +A +Q + + ++ N Sbjct: 80 ANRPKLPIEKQHPSKQKERAAASTTSEAPRKKKKRPLQQARPSQHNEQGKIKKSSHPNAE 139 Query: 680 ENGAHGFTENYDVSIPPVSTPE 701 G H + P+ Sbjct: 140 SKGTHKQGKKPAEVSQKRRPPQ 161 >gi|323191726|gb|EFZ76978.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 222 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 20/111 (18%) Query: 24 RVEEL--DFESEHKKQIKGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIH----- 75 R+EE+ + E G IY KVTR+ AFV GG + G + +I Sbjct: 122 RIEEITAEIE-------VGRIYNGKVTRIVDFG---AFVAIGGGKEGLVHISQIADKRVE 171 Query: 76 --PDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVA 124 DY Q+ +L+ + P + E+ Sbjct: 172 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE 222 >gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1] gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1] Length = 895 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 30 FESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEI 74 E+ KK G +Y KV RVE AFV+ +GFL ++ Sbjct: 617 IENIVKKAEVGEVYDGKVVRVEDKF--AFVELFEGTNGFLHVGDV 659 >gi|313225131|emb|CBY20924.1| unnamed protein product [Oikopleura dioica] Length = 2665 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 16/225 (7%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 A ++ Y + +++ E E +S ++ ++ + + + Sbjct: 2196 NAQEPVMTDIETDNEYQSDGEKSDYEEDELEIEISDSLRPSFDVLNPAELAAAQKNGEKI 2255 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 V K + + + + E + R R Sbjct: 2256 VRKISSPTEMKPISLTIKPSKPSKPITHSVDLDSEAEFDPAPPGSPFREPPKPVSPPRAR 2315 Query: 635 RRRRRPATDHHD-------------AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 ++R+ + D I ++ + + + E Sbjct: 2316 KKRQEESKDETKLVEGRTPSWSAAAEKKDEPRPVPPPSITENQSLMPDRRRTRKLSSPER 2375 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSS---DPIVKKTRWWKRRK 723 ++ DV S + + D K T+ KRRK Sbjct: 2376 STRSSMKSKDVDSDRSSRSSTRKHRNENERIDSREKNTKASKRRK 2420 >gi|320164634|gb|EFW41533.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 506 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 40/160 (25%), Gaps = 6/160 (3%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+ + + + + + + + + + P + Sbjct: 263 ALEQQAKKEKHIAAAARRRAKAAESDEEGSGDAAPMQVDEDAAPAAPRERREHQRPREPR 322 Query: 624 STGVIRKRRRRRRRRRPAT-DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + R+ R R RRPA+ D + + ++ + Sbjct: 323 ESRGSREHSERPRPRRPASGDASEESGAAPARVSAKRRAEADEHDSTEVASRPSKPSNGK 382 Query: 683 AHGFTENYDVSIPPVST-----PEMESSNSSSDPIVKKTR 717 H + + +S+ S K TR Sbjct: 383 GHSEHRKPPQTGAKEEEHSTKRVRISASDDGSLSTTKSTR 422 >gi|317037100|ref|XP_001398431.2| RNA polymerase II transcription elongation factor (Ctr9) [Aspergillus niger CBS 513.88] Length = 1214 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 2/164 (1%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 +E+ + + + + SQ +KN + Q K + E+++ Sbjct: 930 PSSALEQRANMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQE 989 Query: 621 SEESTGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 +E +R+R + + + + ++ T+ Sbjct: 990 AERERKQRVAEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKR 1049 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + N P S+ + KK R +RR Sbjct: 1050 KKKRNEDDFINDGGDSPSRERSSEPDSDGEAAAAPKKRRRLERR 1093 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 16/172 (9%), Positives = 34/172 (19%), Gaps = 16/172 (9%) Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 N R + + E + + + + K + Sbjct: 939 NMGRTILKQLERALQSQKEYEEKNAAKLQQAREAREAEKRQREEEVRKAQEAERERKQRV 998 Query: 593 NIECVWQDEALLPIPKSE------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 E E + + + E V + KR+++R Sbjct: 999 AEERQRMIEEAQRLAEQRAEEERAREEAELTTESETGAKVKRKKRTTSTKRKKKRNEDDF 1058 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 D D+ S D + P ++ Sbjct: 1059 INDGGDSPSRERSSEP----DSDGEAAAAPKKRRRLERRSGSKAQQSKYKSS 1106 >gi|156097883|ref|XP_001614974.1| RAD protein (Pv-fam-e) [Plasmodium vivax SaI-1] gi|148803848|gb|EDL45247.1| RAD protein (Pv-fam-e) [Plasmodium vivax] Length = 536 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 36/160 (22%), Gaps = 6/160 (3%) Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 + + +E D +E Q EA I +E Sbjct: 347 MEGEQLKMEGEQAEADGQAEADGQAEADGQAEADGQVEADGQVEAEEQIEADGQVEADGQ 406 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 + + R++ + A + V + + +P+ Sbjct: 407 AEADGQVEAEEQVEAERKQSEKEAKAEGEKKPTVQVKKPNVQVKKTATQVKKPTAQVKKP 466 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + + + P K+T+ Sbjct: 467 TTQVKKPTAQVKKPTAQEKKPSVK------EKKPEGKETK 500 >gi|296418241|ref|XP_002838750.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634711|emb|CAZ82941.1| unnamed protein product [Tuber melanosporum] Length = 1181 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 15/185 (8%), Positives = 46/185 (24%), Gaps = 5/185 (2%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 E ++ IE S + + + Y++ + + Sbjct: 895 LEEGIQSFSDIARSNNPPYPSSEIEARSTMGKNTFRKQMERAIQKQREYEEKNQAKLAEA 954 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-----HHDAGVVSDVSSI 656 + ++ E +R++ + A + + + + S Sbjct: 955 RRKREEDLRRKREAKEAEEREIEKRNKAIADQRKKMQEEAREFAERKAEEERIREENSDG 1014 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + S + ++G + S + + + P K+ Sbjct: 1015 EKKRKRSSAAGSKSRSTRKRGSKKDGTIDSDSTSEPSRRRSKSKSAITDDDEQKPARKRK 1074 Query: 717 RWWKR 721 + +R Sbjct: 1075 KLTRR 1079 >gi|261326507|emb|CBH09468.1| translation initiation factor IF-2, putative [Trypanosoma brucei gambiense DAL972] Length = 833 Score = 40.0 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 32/129 (24%) Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 +V +E + E+ +P + A DE L +P + Sbjct: 107 IVPDVEKVREQQKKEREAPRPKQQKQKPTQKQEEGAADERAAKAGHESDEDSLDLPVEDD 166 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E + E + R RR ++ + + + + + Sbjct: 167 GEVTEPTESDAEVDEDDWEAMMERDDRREQRKINNERIRKRRAEMVEERLKAKEARKRAK 226 Query: 672 DITNHNLLE 680 + Sbjct: 227 EEERRAKEH 235 >gi|325115376|emb|CBZ50931.1| gh12570, related [Neospora caninum Liverpool] Length = 3009 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 16/156 (10%), Positives = 35/156 (22%), Gaps = 4/156 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + + ++ + + ++ + Sbjct: 335 ERVERREQGGDEPDRGDPHGRSRGKSPRRRGRDDRGSERDDCGVPEPREESEDDAASGGE 394 Query: 626 GVIRKRRRRRRRRR----PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 R+ + +R RR +D + GV S + + S + Sbjct: 395 RKRRRYQDQRGRRETRASRESDLEERGVSSRGEASRRARSSSRAKEKREERTPGSEGEDG 454 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 G E D E S K Sbjct: 455 CDGGRAEFQDSVSEVKKGRRGEREKSRKARKDAKLG 490 >gi|27803008|emb|CAD60711.1| unnamed protein product [Podospora anserina] Length = 820 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 36/171 (21%), Gaps = 5/171 (2%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + +I + S + + Sbjct: 342 ESSDHRSPEREHITRLRTAPPETPRSRAQRDILNNDSNMSEGLPDKPLTRKTSLDSATVS 401 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +S R +R+ ++ D SS S Sbjct: 402 RRSAGASLSAARIKSTPTRSGNKRKTPQLGNNSDRARPRRSSSPVLSESSSSSFETPARR 461 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + V + S +S D K+ + WK+RK Sbjct: 462 -----PSGQHKRSTVERQREASLIVDSIIQPSESSEDDEPTKEVKSWKKRK 507 >gi|224007643|ref|XP_002292781.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971643|gb|EED89977.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 813 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 8/152 (5%) Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQD 617 L IEK A + + E +D+ + + + E+ + Sbjct: 492 LDKNKVTIEKVVGWDAGETGVSSSHEEPEESHEVSAHED--KDDMPVSTRRKRAFEESVE 549 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 +EE ++R+RR ++ + ++ + ++ D + Sbjct: 550 AKDAEEEAPEPPRQRQRREDVVEESETPKKKATATAAATEKRRNEEHDEVEGEAPAAV-- 607 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + PPV E + S+ Sbjct: 608 ----PVKKSKKATTAGPPPVEQVEYDPSSDEE 635 >gi|195167765|ref|XP_002024703.1| GL22477 [Drosophila persimilis] gi|194108108|gb|EDW30151.1| GL22477 [Drosophila persimilis] Length = 653 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 42/176 (23%), Gaps = 2/176 (1%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 E R + +Y ++ + ++ +E ++DE Sbjct: 192 LEQRPQRPLR-RPYNRRPIDDYYYDEEDQYEDEYYERPTRRHKTRPRHRKPQVEVDYEDE 250 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR-RRRRPATDHHDAGVVSDVSSIQNVI 660 ++E N +E + R RR T VS Sbjct: 251 YEEKRVEAEKPARRNRNRYRDEEESLDEDYEERPAIRRGKPTPGPAGRKVSPPRKPGRAE 310 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + P N ++ D P + E + P KT Sbjct: 311 ERRSFNEDRPLARRRSNERRTTPSSAIDDLDEYEKPYGGTDQEEAAEEQTPQKVKT 366 >gi|171689876|ref|XP_001909877.1| hypothetical protein [Podospora anserina S mat+] gi|170944900|emb|CAP71011.1| unnamed protein product [Podospora anserina S mat+] Length = 719 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 40/155 (25%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G P ++ K P P SE E+ + ++ T Sbjct: 257 GRPAKSQEPARAKAAPVISKPVKQTKKSAEKASVEQEPEEGSEGGEEEEKEEEIQQPTRP 316 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 K +R RPA+ + + + E + Sbjct: 317 PSKPAAPGKRGRPASKASNKAPELAPAPAAGRGRKRQAVPEEEEEEEATAEPSQEPQSKK 376 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + D + E + ++ KKT KR+ Sbjct: 377 KRTDAGPSRKKATKNEKATAAPADKPKKTAGRKRK 411 >gi|268569578|ref|XP_002640558.1| Hypothetical protein CBG15828 [Caenorhabditis briggsae] Length = 1474 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 16/201 (7%) Query: 531 LLNQKRATIVEYEARFGVSINVVI------GIELADKLFYIEKGSPVQALVNTGHKVGSD 584 +L KR + ++ + + +V L E P + + Sbjct: 561 ILKTKRNALPDFSSASKRAKLLVPSIVKPSDPNLDSAASAEEAPGPSKLSEGKSERQTGQ 620 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST---GVIRKRRRRRRRRRPA 641 P + E P + ++ + ++ ++R R R+ + Sbjct: 621 EAVPENQEASTVPVDREISGPGDQGSEEQESEGQGPKDQEQVIPIPAKRRSGRPRKEQNQ 680 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 D I+ + +E N N + N + + S P + Sbjct: 681 NLEDKEPEARDADFIEPL-------DLEIPATRNANSINNSKQALAKQAEASEAPAESAP 733 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 ++K+ W R+ Sbjct: 734 APKPAYGPHAVIKEIPEWIRK 754 >gi|256084731|ref|XP_002578580.1| transient receptor potential channel 2 isoform 3 [Schistosoma mansoni] gi|238663958|emb|CAZ34818.1| transient receptor potential channel 2 isoform 3 , putative [Schistosoma mansoni] Length = 578 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 36/129 (27%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + D + +DE E L D + + Sbjct: 416 KKSDDSDWRPASSDEEDDNDDEDDGFQETDEDEDNGGEGSDEDLSDEPNRRRKRKIKADR 475 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + ++RRR + + V ++ +N D+ + + + + E Sbjct: 476 KNLQKRRRSTTSDGSNAEKNVTTNDPEDENTDDEIQRVMTSSRNQLSVADEDEDEEAIKE 535 Query: 689 NYDVSIPPV 697 + S+P + Sbjct: 536 SLMNSLPDI 544 >gi|198465721|ref|XP_002135027.1| GA23468 [Drosophila pseudoobscura pseudoobscura] gi|198150286|gb|EDY73654.1| GA23468 [Drosophila pseudoobscura pseudoobscura] Length = 1924 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/169 (8%), Positives = 36/169 (21%), Gaps = 17/169 (10%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + K P + + + + + E S++ Sbjct: 377 DVSKEKPRERSKEHPKDMYMPKEKNRDRSKDRHRERSKDRHRERSKEKKSKETTRERSKD 436 Query: 624 STGVIRKRRRRRRRRRPA-TDHHDAGV--------VSDVSSIQNVIDDSFDMYMEPSDIT 674 ++ + + + + T+H + + + Sbjct: 437 DKKNAKRPKDLKESSKESHTNHAEKPRDFPKEISHRDNKEQPKEHRSKEGMHEQSAEKRR 496 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD--------PIVKK 715 G E V + + S + S + P KK Sbjct: 497 EPLKDNKSRPGSMEKSSVKCSKETAKDDRSKDRSGEKPRLDKSHPTEKK 545 >gi|194381132|dbj|BAG64134.1| unnamed protein product [Homo sapiens] Length = 992 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 853 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910 Query: 720 KRRK 723 R + Sbjct: 911 SRER 914 >gi|194882691|ref|XP_001975444.1| GG25360, isoform A [Drosophila erecta] gi|190658631|gb|EDV55844.1| GG25360, isoform A [Drosophila erecta] Length = 4884 Score = 40.0 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 86/307 (28%), Gaps = 13/307 (4%) Query: 422 LIVVDFIDMEEKKNNRSVEKK----LKESLKKDRARVQVGAISNFGLLEMSRQRI---RS 474 +I D +D ++ N +E+ L E ++ Q+ FG +++ ++I Sbjct: 2502 IIFDDLLDERTERINPKIEEIKKILLSEYDYIEKKDGQLHTAVVFGKIQLITEKILYICE 2561 Query: 475 SVLESTTKVCTYCKGAGYIRSQSSVA---LSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + AG I+ SI R + + Q I +D + + Sbjct: 2562 DFKQIIESQNQNKDAAGDIKKSEIEDVVDHSIERDILKEPQQLEIDTDIKSGQADSLDEV 2621 Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 +++ + E + + + E + + + + Sbjct: 2622 FDKQALEEKQLEDSAQKQADQNVEQKPQKPEVS-EVVAEKISEEKIEESKKPEVKETEEK 2680 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 +AL +S++ D ++S + + V Sbjct: 2681 SEKAKALDKQALEEKQLEDSVQKQADQDADQKSQKPEVSEVVAEKISEEKIEEPKKSEVK 2740 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLL--ENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 D +E + + + A ++ +VS E + Sbjct: 2741 DTEVKSEKAKALDKQALEEKQLEDSAQKQADQDADQKSQKPEVSEVVAEKISEEKIEETK 2800 Query: 710 DPIVKKT 716 P VK T Sbjct: 2801 KPEVKDT 2807 >gi|145251900|ref|XP_001397463.1| ribosomal RNA methyltransferase Nop2 [Aspergillus niger CBS 513.88] gi|134083004|emb|CAK42767.1| unnamed protein product [Aspergillus niger] Length = 762 Score = 39.6 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 5/151 (3%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 A + V S + + + ++ ++ + S +++ + Sbjct: 596 NSAKKSKTLSVASTTTDDDEPIDKTPITDEDGMVIETEGGSFGPFEEDEEDAARIARAER 655 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R RR+ P A + S + E + + E+ Sbjct: 656 NRLRRKGLNP-----KAILNKPAKSKSKDESSAPTEKTEEKEKKKEESPKRETPAKKESK 710 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + P + ++ +++P K + K Sbjct: 711 ESPKPKADSKPTKTKTETAEPSTTKKQQQKP 741 >gi|297281679|ref|XP_001087893.2| PREDICTED: protein ELYS isoform 1 [Macaca mulatta] Length = 2336 Score = 39.6 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 7/182 (3%) Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576 ++ T + + +Q+ I+ + ++ V + + + N Sbjct: 1935 SSVTKRTPRRIKRSVESQESVEII-----NDLKVSNVTSPSRMIRKLRSANLDASENIGN 1989 Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 SD Q P + + + +L+ Q ++ +E I ++R R R Sbjct: 1990 KPDDKSSDEQLPIKRIRRVRGREVSPS-DVREDSNLDSSQLSLQAELDMSAIPRKRGRPR 2048 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + P+ D V + S + S S + G ++ V Sbjct: 2049 KIHPSEDVGSK-AVKEEGSPKKKEAPSIKRRSTRSTAAKSENTDVGKPASGKSILVPNKE 2107 Query: 697 VS 698 +S Sbjct: 2108 LS 2109 >gi|224070158|ref|XP_002196431.1| PREDICTED: retinoblastoma binding protein 6, partial [Taeniopygia guttata] Length = 1737 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 45/185 (24%), Gaps = 14/185 (7%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 EK + P+ ++ + EA P S+ Sbjct: 1011 KTDSVKTSSSQKDEKALGTPRKAHPKVAKDHPETRPAKEEKAKKEHPKEAKAEKPSSKEE 1070 Query: 613 EDIQDNIVSEESTGV-IRKRRRRRRRRRPATDHHDAGVVS------DVSSIQNVIDDSFD 665 + + S+ S +++R+ + + A S + Sbjct: 1071 KSKKPAEKSKLSDAKLEKRKRKAEEKADKEHEASSAKAYKLETAELKTSPKGKAEPEGEK 1130 Query: 666 MYMEPSDITNHNLLENGAHGFTENYD-------VSIPPVSTPEMESSNSSSDPIVKKTRW 718 P L ++PP + SSS +KT+ Sbjct: 1131 GERTPEKDKAAFLNNPSKKIKLNRETGKKIVSGENVPPGKEAVEKPEPSSSKVKAEKTKG 1190 Query: 719 WKRRK 723 RRK Sbjct: 1191 KARRK 1195 >gi|198455645|ref|XP_001360084.2| GA12417 [Drosophila pseudoobscura pseudoobscura] gi|198133334|gb|EAL29237.2| GA12417 [Drosophila pseudoobscura pseudoobscura] Length = 579 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 38/168 (22%), Gaps = 10/168 (5%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + K + Q+P Q +S + + Sbjct: 192 GSPDQSPPRRKRDEDQSPPRRKRVNSDQSPPRRGRKSSPDQSPPRRRRDSDQSPPRRRRS 251 Query: 619 IVSEESTGVIRKR------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 S +S +R R+ RR S DS D Sbjct: 252 HNSNQSPPRKGRRSSADQSPPRKGRRSSPDQSPPRRRRDVDQSPDRRRKDSDQSPPRKRD 311 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 ++ N + E S P +K+RW K Sbjct: 312 LSPPRRRRNSDQSPPRRRRSASRERRPRIKEES----PPGRRKSRWAK 355 >gi|315044863|ref|XP_003171807.1| cupin domain-containing protein [Arthroderma gypseum CBS 118893] gi|311344150|gb|EFR03353.1| cupin domain-containing protein [Arthroderma gypseum CBS 118893] Length = 615 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 16/158 (10%), Positives = 42/158 (26%), Gaps = 2/158 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 L+ + + P +A + + ED +++ S G Sbjct: 213 SDDANHLIEDEAEDNEFVEPPGDYHEAATHDDVDAESSGAEEDQAEDSPAPVLNTSSKGN 272 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 RK + + + + ++ + + Sbjct: 273 KRKELDKDVEKSDDKSTRNPSAKRRGRKPKGQQEERGQEPNTDDENPRPAKKVKKTTTKS 332 Query: 688 ENYDVSIPPVSTPE--MESSNSSSDPIVKKTRWWKRRK 723 N ++ + +E+ + P+ KK +W+ K Sbjct: 333 SNLQMTTEQEKDLQNVVENITKNDGPLNKKRTYWRNEK 370 >gi|258575579|ref|XP_002541971.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237902237|gb|EEP76638.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 896 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 47/184 (25%), Gaps = 20/184 (10%) Query: 534 QKRATIVEYEARFGVSINV-----VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 +K + E +R + I V + + E+ + + + Sbjct: 96 RKETLLKEIHSRNKIGILVDRRFGENDPTMTPEERAAERFARESQRRLKKESMFNLEDDE 155 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 + + Q + ED + ++ +G +KR+R Sbjct: 156 DEEMVLTHGGQTLTFDETAGDDFEEDDLNGSEEDDESGKEKKRKR--------------- 200 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 +V + + E + E A Y+ ++ ++ Sbjct: 201 LVEEDDMEGLAEASDEEGQPERKKSKQEVMKEVIAKSKMYKYERQKAKEDDDDLRATLDK 260 Query: 709 SDPI 712 P Sbjct: 261 GLPT 264 >gi|225010592|ref|ZP_03701063.1| transcription termination factor Rho [Flavobacteria bacterium MS024-3C] gi|225005421|gb|EEG43372.1| transcription termination factor Rho [Flavobacteria bacterium MS024-3C] Length = 588 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 3/157 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 + K ++ + + + P + + + + E + + Sbjct: 23 KVPKFKTLKKIDLVYQILDLQATNPKAVVAVATPVLEGKTDDVLSKSNSEAVTETTKEAS 82 Query: 624 STGVIRKRRRRRRRRRPATDHHDAG-VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + +R+ R R+P ++ V+ SS + + +P I N Sbjct: 83 VNAEVVRRKPNPRPRKPKEENDQVSFKVATQSSDKTTEATARPERTKPEGIPN--KKSPE 140 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 A S P PE + +N + P K T Sbjct: 141 AEEQNNGRIQSNRPNRRPEGKQNNREARPTEKSTEQR 177 >gi|148230727|ref|NP_001086696.1| cyclin-dependent kinase 11B [Xenopus laevis] gi|50414818|gb|AAH77321.1| MGC80275 protein [Xenopus laevis] Length = 788 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 63/226 (27%), Gaps = 10/226 (4%) Query: 501 LSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEAR-FGVSINVVIGIELA 559 + L + + + + + + KR ++ E E R + I + Sbjct: 10 VKTLDEILQEKKRRKEQEEKTEVNPNKNADDRDSKRDSLEEGELRDQKMEITIRNSPY-K 68 Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE--------ALLPIPKSES 611 + ++G +L + + + K+ + + + + + Sbjct: 69 REDSIEDRGEEDDSLAIKPPQQILRKEKSHHRKDEKRKEKRRHRSHSAEGSAGKHIRVKD 128 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + +R R++RR H + ++ + + + Sbjct: 129 KDREHERRKRRREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKVREQQK 188 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + E A + D+ + + S V ++R Sbjct: 189 EQRELKERERRAEERRKERDLKREAAAHHRTAREDHSEKNKVIRSR 234 >gi|270015968|gb|EFA12416.1| hypothetical protein TcasGA2_TC004983 [Tribolium castaneum] Length = 1080 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 69/288 (23%), Gaps = 32/288 (11%) Query: 448 KKDRARVQVGAISNFGLLEMSRQ-RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRS 506 +D+ + G R+ R R E + + A L Sbjct: 50 SEDKTKTHSKKDPALG--PGVRELRSRFVYSERKYSSSLRSDNLNTRKRIALDARHSLTV 107 Query: 507 VEEYLLQYTAHNIIVHTHSDVVL----YLLNQKRATIVEYEARFGVSINVVIG----IEL 558 + + + D + R+ + E R +S+ + + Sbjct: 108 YSSRNMHNDSDMYNGNDSDDDMYSRKPRRSRHLRSHLDRIERRTALSLRPISQKCYADSM 167 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 +D K N Y + +E P E + Sbjct: 168 SDTELRRSKRQRKVQFENMSWLADDQMHKMGYPNLNTPGYSEEDSRDAPDVRLEEPSRST 227 Query: 619 IVSEESTGVIRKR----------------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 S + R+ RRRR + + ++N + Sbjct: 228 RHSNDVNSGKRREIKSPKYLYNYETNDVPPRRRRS-----EITSRSSERNQKELRNRRES 282 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + E ++I + + +E S +E ++ S Sbjct: 283 NDKENNEETNINGRSSHSRSSKRTSEAAGEDSEKKSDDTVEDDSNDSK 330 >gi|253572643|ref|ZP_04850044.1| transcription termination factor rho [Bacteroides sp. 1_1_6] gi|251837775|gb|EES65865.1| transcription termination factor rho [Bacteroides sp. 1_1_6] Length = 740 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 11/149 (7%), Positives = 34/149 (22%), Gaps = 4/149 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + +K + + + ++ E Sbjct: 85 RSRTAAPKKEEKVAPAAKNAEVTKNKENAPAAKPQQQPKEEAANKAKEAPVAEPKAEKAA 144 Query: 627 VIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +++ R R+ ++ + + + + P+ E Sbjct: 145 P-KRKVGRPRKDANIAEKAENKEVENAKPIVKPTEEKAVAEKTVVAPAAEKATPTQETEK 203 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPI 712 V+ PV + S D Sbjct: 204 KVKENKPAVAEKPVIAKPQKKSAPVIDEE 232 >gi|219112679|ref|XP_002178091.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410976|gb|EEC50905.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1458 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 42/171 (24%), Gaps = 13/171 (7%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 IE+ + + + +++E ++ L E +E + E Sbjct: 679 QIERRRLDEERIRHEAEREQRISLELKRQDMESKQREIELRQQQAKERIELERLQKEEVE 738 Query: 624 STGV-----IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 RK R RR+ + + ++ + ++ + Sbjct: 739 QQRKLEEEAERKARDEEVRRQLELERLEKTRREELKRLDEEARKREEVEKQRLQREAEEA 798 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNS--------SSDPIVKKTRWWKR 721 +++ + + KK WKR Sbjct: 799 EARRQEEAARQKKLALEKEKERQQCEEKARLNDVRWREQTEEAKKILLWKR 849 >gi|260813252|ref|XP_002601332.1| hypothetical protein BRAFLDRAFT_123239 [Branchiostoma floridae] gi|229286627|gb|EEN57344.1| hypothetical protein BRAFLDRAFT_123239 [Branchiostoma floridae] Length = 465 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 34/150 (22%), Gaps = 3/150 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 KG + + S + + + +S Sbjct: 112 KGRQQSDSDQSPPRRKRHDSDQSPPRRKRHDSDQSPPRKRKPNSDSDQSPPRRKRHDSDQ 171 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++R R + D+S + D D+ + + + Sbjct: 172 SPPRKRGRDHGTNQSPKRRRHDSDDDLSPPRRRADADEDLSPPRRRQRHDSDSDLSPPRP 231 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + PP P S D +K+ Sbjct: 232 SRADSDQSPPRQKP---SDGRRKDKQQRKS 258 >gi|294658357|ref|XP_002770767.1| DEHA2F07678p [Debaryomyces hansenii CBS767] gi|202953070|emb|CAR66294.1| DEHA2F07678p [Debaryomyces hansenii] Length = 1064 Score = 39.6 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 47/203 (23%), Gaps = 35/203 (17%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E G+ I ++ + S D+ + E Sbjct: 731 EEEHGLKIV-------------MDNKKQDLEHSSKSSNKIQSSLNEVDDEKVSAKEDTEP 777 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS-DVSSIQNVID 661 SE + ++ + R+ + + D + + ++ Sbjct: 778 SKEDITSEPASESKEGKKRLSAKERRMLRKGKDIKVSENEDTDEDVFDPIEQEMKNLKLE 837 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFT---------------------ENYDVSIPPVSTP 700 ++ EPS N+ + V Sbjct: 838 ETKKKTAEPSSQKPPNVRGKKSKMKKIAAKYADQDEEERKIRMEALGTLKQVEAEKQKQI 897 Query: 701 EMESSNSSSDPIVKKTRWWKRRK 723 + E + S D V + +RRK Sbjct: 898 DEEENKESKDKYVNEALNAERRK 920 >gi|320334709|ref|YP_004171420.1| ribonuclease R [Deinococcus maricopensis DSM 21211] gi|319755998|gb|ADV67755.1| ribonuclease R [Deinococcus maricopensis DSM 21211] Length = 1281 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 40/167 (23%), Gaps = 7/167 (4%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +++ +A + V + + D P + + Sbjct: 108 TLKRTRGRKAALQEPQAVPAPVAELDAAPEVAAERPDITPAPEAEPVVADTPAVQAEPAA 167 Query: 624 STGVIRKRRRRRRRRRPATDHHDAG-------VVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + RR RR+ D V + P T Sbjct: 168 APAPTEAKPRRGRRKNAEPDAPTPEPTPAVSTVAEAPAESAPAKRTRRKNARVPDAPTPA 227 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + E + D PPV + ++ P + RR+ Sbjct: 228 PVAEALSVEAAVEGDEQEPPVPEAPAMDAPVTAKPTPEAPARQTRRR 274 >gi|328772567|gb|EGF82605.1| hypothetical protein BATDEDRAFT_86542 [Batrachochytrium dendrobatidis JAM81] Length = 858 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 11/161 (6%), Positives = 45/161 (27%), Gaps = 6/161 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + ++ + ++ L + + LE+++ E+ Sbjct: 469 RLQEEKQRQDERRLQDEKRRQQELEELQKQRQRELKELEKQRQQELEELEKQRQEEKRLQ 528 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE------ 680 ++R+ +RR+ + ++ ++ + + L + Sbjct: 529 DEKRRQDEKRRQEEKRLQDEKRRQQELEELEKQRQQELEKLEKQRQQELEKLEKQRQQEL 588 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + E+E ++ +R Sbjct: 589 EKLEKQRQQELEKLQKQRQQELEELERKRQQDFEEDLKRQR 629 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 18/189 (9%), Positives = 50/189 (26%), Gaps = 19/189 (10%) Query: 554 IGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ------------- 599 L D F I E G ++ + Q +K + + Sbjct: 388 PDESLGDDTFKIPEDGETIEDAKQQRDEELEQEQKRQEEKQRQEERRLQEEKRRQEEKRR 447 Query: 600 --DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 + L + + + + + EE +R + +RR+ + ++ ++ Sbjct: 448 QEERRLQDEKRRQEELERLEKRLQEEKQRQDERRLQDEKRRQQELEELQKQRQRELKELE 507 Query: 658 NVID---DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + + E + E+E ++ Sbjct: 508 KQRQQELEELEKQRQEEKRLQDEKRRQDEKRRQEEKRLQDEKRRQQELEELEKQRQQELE 567 Query: 715 KTRWWKRRK 723 K ++++ Sbjct: 568 KLEKQRQQE 576 >gi|301100550|ref|XP_002899365.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262104282|gb|EEY62334.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 1586 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 15/176 (8%), Positives = 41/176 (23%), Gaps = 18/176 (10%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ ++ + A + P P+ D ++ + Sbjct: 1351 ERRGHRDHRESSPAAGSNSMNAIETRERSGSASGKHERSPAPRRSRSGDRTEDRGNTSEN 1410 Query: 626 GVIRKRRRRRRRRRP----------------ATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + R R R + T+ + + + ++ Sbjct: 1411 RRPSRERGRERGQSNRGGGRGEGGRRGRGDRDTNVQLSSRSRSHDRHERNSRNRGPIHGR 1470 Query: 670 PSDITNHNLLE--NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 TN + T + + PV + + ++ + R+ Sbjct: 1471 EDSDTNSVRKHLVSSKAASTGSPARNEEPVKSTSSPNPERDAESTKSNRGARQERE 1526 >gi|195330135|ref|XP_002031763.1| GM23870 [Drosophila sechellia] gi|194120706|gb|EDW42749.1| GM23870 [Drosophila sechellia] Length = 2401 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 17/188 (9%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + E + ++K SP + + S+S + Sbjct: 1059 ELEDRFNALERK-----------------MSVQKSSPSKNKKEPPDEKESESTKEPEEPE 1101 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + + + E+ + + ++ + + + + +D Sbjct: 1102 ESEKANENTSGSQSPIAKKDPKDSDQKKPETKEKQSPIKNQNQKVKAKSPKSEEIIENDT 1161 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + +S + + E H E S E+ + Sbjct: 1162 SKPKEDSQESKTATNKKVEANRKLSSEESDHTKKEKRVESPGKNDKETAETKIENVKDSS 1221 Query: 714 KKTRWWKR 721 +K+ + K+ Sbjct: 1222 RKSDYQKK 1229 >gi|116207854|ref|XP_001229736.1| hypothetical protein CHGG_03220 [Chaetomium globosum CBS 148.51] gi|88183817|gb|EAQ91285.1| hypothetical protein CHGG_03220 [Chaetomium globosum CBS 148.51] Length = 655 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 1/154 (0%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+ + ++ + + + + P SE + + Sbjct: 191 QIDGTTTTTTPTPIANQASTPNAPTAAPADRSSRVAVTPA-ETPISEQAQPASETAPEPA 249 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + + +R R+R T + D S+ + E + Sbjct: 250 TNSSQTAKPKRGRKRTTTTVAIEDAGEQDPSTSRKRPRKRAAPLPGEEGHQPAARRETRS 309 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + E E++ + R Sbjct: 310 RKRSASAVEDEEVEEDGEEENAGQHKKKPPRPQR 343 >gi|318061483|ref|ZP_07980204.1| hypothetical protein SSA3_26313 [Streptomyces sp. SA3_actG] Length = 683 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 16/156 (10%), Positives = 34/156 (21%), Gaps = 9/156 (5%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS---EESTGVIRKRRR 633 H +A D+ + + K ++ + + R Sbjct: 257 DQHAQRMKQKAAGVDRASKSKGARQDAKDRAKVARIKAQGERKQRIRDGRQAAKDKARDA 316 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLENGAHGFT 687 +R+RRR + + + + P G Sbjct: 317 KRQRRREEKEARTLLGDALAKTAGKRLRKRRKSLAPPIISKTGKKRRKEKPAPPPPRGVL 376 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P + + + R W RK Sbjct: 377 DKVVKDTPKPPPTMPRAGAAKKKSAGGRRRKWSFRK 412 >gi|291235177|ref|XP_002737523.1| PREDICTED: La autoantigen-like [Saccoglossus kowalevskii] Length = 709 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 12/183 (6%) Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL--PIPKS 609 + I+K + V K +D+ + + + EA+ + + Sbjct: 236 ITGDKHPHQ-HGDIQKEIEDDSRVKKRRKRSNDNSSSDESDAKKRKKESEAVQGPQVKEK 294 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 D +++ + R+ + R T+ D+ + SD + Sbjct: 295 PGNRKDTDKHGKDKNKHRKDEDRKDKDRYEKDTNKDDSQIKSDGKDGNKRRKEDKPSKET 354 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEME---------SSNSSSDPIVKKTRWWK 720 T+ + + N + + + N KK+ K Sbjct: 355 DRHKTDRDTCIKDEEKLSRNQSDNNEDSGKKDKDGHGIVEDSHDKNKDKLRESKKSDEQK 414 Query: 721 RRK 723 R + Sbjct: 415 RER 417 >gi|115397837|ref|XP_001214510.1| predicted protein [Aspergillus terreus NIH2624] gi|114192701|gb|EAU34401.1| predicted protein [Aspergillus terreus NIH2624] Length = 1081 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 14/160 (8%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + S S K+ + E+ +++ + + N E+ R Sbjct: 731 EALIAQHDSPASPQASNMRSEAKHRKDAKPKESRKRRRRTDPVIEENLNGSVPETPDDSR 790 Query: 630 KRRRRR-----RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +RRR+ PA A ++ Q + D + E Sbjct: 791 PKRRRKTVTGPTAPSPAPQPTPASKLNPTPRSQKRVKDGKQSKTGSEAVGEKTAAEPPKT 850 Query: 685 GF---------TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E V+ P + P + S S+ + K Sbjct: 851 KERKPASQLKIKERKTVAETPKTKPSKDMSGSTKVKVPKN 890 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 1/160 (0%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F++E +A + + A + ++ + A P S +++ + Sbjct: 696 FFVEDVDEEKAKIKAREEARKRGIATNRSMSVGDIEALIAQHDSPASPQASNMR-SEAKH 754 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 ++ R+RRRR P + + G V + + + Sbjct: 755 RKDAKPKESRKRRRRTDPVIEENLNGSVPETPDDSRPKRRRKTVTGPTAPSPAPQPTPAS 814 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T + + S + + +R+ Sbjct: 815 KLNPTPRSQKRVKDGKQSKTGSEAVGEKTAAEPPKTKERK 854 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 42/163 (25%), Gaps = 2/163 (1%) Query: 557 ELADKLF--YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 ++ F +++ K G + +IE + P++ ++ Sbjct: 691 DMDSPFFVEDVDEEKAKIKAREEARKRGIATNRSMSVGDIEALIAQHDSPASPQASNMRS 750 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + ++RRR + D + + P+ Sbjct: 751 EAKHRKDAKPKESRKRRRRTDPVIEENLNGSVPETPDDSRPKRRRKTVTGPTAPSPAPQP 810 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 N + + E ++++P K R Sbjct: 811 TPASKLNPTPRSQKRVKDGKQSKTGSEAVGEKTAAEPPKTKER 853 >gi|13506761|gb|AAK28322.1|AF230482_1 tight junction protein ZO-1 [Hydra vulgaris] Length = 1695 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 39/147 (26%), Gaps = 3/147 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ + +++ ++ +D + ++ +E Sbjct: 219 KSEKSHRSRSKNREDNAEGEKSHRSRSKNREDAETGEKSEKSHRSRSKNREDAETGEKSE 278 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R R R R D S ++ + + T +L + +E Sbjct: 279 KSHRSRSRNRE---DAETGEKSHRSRSKNREDPETEEKSLRSKSKTREDLSKTTESEKSE 335 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715 S S ME NS + Sbjct: 336 KIPKSQSKASLGGMEKENSDRQKSKTR 362 >gi|326433752|gb|EGD79322.1| hypothetical protein PTSG_09736 [Salpingoeca sp. ATCC 50818] Length = 906 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 45/163 (27%), Gaps = 8/163 (4%) Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 I + + + V + + ++ D++ Sbjct: 498 PIALPGSTGMHPAHDHALPLDTHMQHVPAVDLPSASAMTGGRKESEGVPDTDDSGDEGDV 557 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDS 663 +S D + + R++ RR + R T+ H G + + + Sbjct: 558 DDSGSDADETAT---THPSARRKHARRNKSRVPQRATGTNTHKRGAKATQQRRASARRTA 614 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 PS I N N + + + S ++ +S + Sbjct: 615 SCSADTPSAINNTNHTDRTSSNHHTTTNTSTNNNNSKRSKSVS 657 >gi|242037389|ref|XP_002466089.1| hypothetical protein SORBIDRAFT_01g001010 [Sorghum bicolor] gi|241919943|gb|EER93087.1| hypothetical protein SORBIDRAFT_01g001010 [Sorghum bicolor] Length = 535 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 51/222 (22%), Gaps = 21/222 (9%) Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 + R ++ ST C G S+ +V I E + + + + D Sbjct: 7 LKRPKLEKDDNGSTYCPCPASNGEDDDISEEAVVALIAHR-ERDVERCKLKLLHYQSLLD 65 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 L + ++ + + R +L P+ Sbjct: 66 TAEMKLEEAQSRLARFRDR--KPPTTRSEPKLPTP--------PIHRDPKPSPPPIQRDL 115 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 PS + LP K+ S G + R Sbjct: 116 KPS----------PQPPLPEKKAPSPAPQPSARPHLVIPGTSNRPAPRPEPMPGLKKAAA 165 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 S + + + + + NL+ N Sbjct: 166 PSSSSSPAPPERSRKEEKKPKRKIEQKEHQNLIPNVKKSSAT 207 >gi|255576469|ref|XP_002529126.1| prp4, putative [Ricinus communis] gi|223531405|gb|EEF33239.1| prp4, putative [Ricinus communis] Length = 1033 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 32/150 (21%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + + +D+ + + + S R+R Sbjct: 315 EQGRERSRERDQRRDKDRERSRERDQRRDKDRERSRDRDLRREKGREGSRDSSVDRYRRR 374 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + + R R D + D + + + N E Sbjct: 375 EKEQERSRDREVDRDLKRQKQQERSWDREVDRDQRKERQWERSLDREMINDRRREREQGR 434 Query: 692 VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + S D + + R Sbjct: 435 SREEELDKKRQKEKDRSKDKSMSRANERDR 464 Score = 37.6 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 17/180 (9%), Positives = 42/180 (23%), Gaps = 16/180 (8%) Query: 557 ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL-------PIPKS 609 + ++ +++ + N ++ V ++ + Sbjct: 238 SIVEEDVLLKRRQHNEKAENDSADERMPGHDEDLWRSSRDVERECSTNYIRSQGGEERHG 297 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRR--------RRPATDHHDAGVVSDVSSIQNVID 661 ++ ++ E + R R R R D + Sbjct: 298 SWNTQGREREMNWEQRREQGRERSRERDQRRDKDRERSRERDQRRDKDRERSRDRDLRRE 357 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + S + D + E S + D +K R W+R Sbjct: 358 KGREGSRDSSVDRYRRREKEQERSRDREVDRDLKRQKQQER-SWDREVDRDQRKERQWER 416 >gi|19527026|ref|NP_598568.1| leucine-rich repeat-containing protein 59 [Mus musculus] gi|81916386|sp|Q922Q8|LRC59_MOUSE RecName: Full=Leucine-rich repeat-containing protein 59 gi|13905170|gb|AAH06877.1| Leucine rich repeat containing 59 [Mus musculus] gi|26343467|dbj|BAC35390.1| unnamed protein product [Mus musculus] gi|42490949|gb|AAH66172.1| Leucine rich repeat containing 59 [Mus musculus] gi|56206968|emb|CAI24964.1| leucine rich repeat containing 59 [Mus musculus] gi|74151576|dbj|BAE41137.1| unnamed protein product [Mus musculus] gi|148683988|gb|EDL15935.1| leucine rich repeat containing 59, isoform CRA_a [Mus musculus] Length = 307 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 1/94 (1%) Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R R+RR + + + E + + Sbjct: 152 QADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASKR 211 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E + S P K TR W Sbjct: 212 EQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSW 245 >gi|46111831|ref|XP_382973.1| hypothetical protein FG02797.1 [Gibberella zeae PH-1] gi|84029316|sp|Q4IJ11|IWS1_GIBZE RecName: Full=Transcription factor IWS1 Length = 428 Score = 39.6 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 3/158 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ A+ SD+ + + E + A + + ED+ + + + Sbjct: 20 QEQEYEDAVAAADSDHDSDALSEVDEDQFEDYDPETANIEDRPVDIDEDVARTLKATKRK 79 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + ++ R + + + D S + + Sbjct: 80 RTEGEAPKKPR---EGRRDKKRRDRDEDVEMDDAEDGSKKSRRSRRVAVDGERRQKSKAA 136 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + + + + D +KK KR+K Sbjct: 137 TPEPENEDHLSPEERRKRAIDRALDAAIKKPSGQKRKK 174 >gi|298386922|ref|ZP_06996477.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298260596|gb|EFI03465.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 511 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 20/209 (9%), Positives = 41/209 (19%), Gaps = 33/209 (15%) Query: 527 VVLYLLNQKRATIVEYE--ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 + + K +++E E I+++ L ++ + N Sbjct: 313 IAMNKKGMKPDSLLEAEVKQESKKPIDLLEQESLT----RFDRNRNNKDGNNGNRNKKKR 368 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK-------------- 630 + + P + G Sbjct: 369 KGNNDNRPQAQAEGGNRPQQPQRGENENRPQPSENGNRGERGDRENRPRNNNNNNRNRGQ 428 Query: 631 ------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 RR R + + + QN +P N Sbjct: 429 NQGRNNENRRPERGQNQERPQNPNRPQNQERPQNRER-------QPKQERPQNQERPQEQ 481 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV 713 G N + P E ++ P Sbjct: 482 GRQPNQERIPRPERNSNQEKPQNNEKPAQ 510 >gi|91082491|ref|XP_972709.1| PREDICTED: similar to programmed cell death protein 11 (pre-rrna processing protein rrp5) [Tribolium castaneum] Length = 953 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 43/387 (11%), Positives = 116/387 (29%), Gaps = 26/387 (6%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 + ++ + KE + + ++ S EE E EE++ Sbjct: 496 ALKEKINKEEENDVEEDSDEEIVIEEEALSDEEIVSDEEALSDEEIVSE--EEALSDEEI 553 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 + + E+ + + + + + + + E+ + +TT + Sbjct: 554 VSEEEALNDEEIVSEEEEEALNDEEIVDKQNEESKENI--SDSEDEDSAKPKITTLDQSS 611 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 + S ++ N + ++ +E ++ + A K E +R Sbjct: 612 NAETPKESVLSGAQSFYSTEDNNLKEESSEEEEEEIDQSKKKKKLTPAERAEIAKKEEER 671 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 + L D+ L+ N K ++ + + + + A D Sbjct: 672 ISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQYMSMHIATTELDKARAVGKRALD 731 Query: 324 FMKLL--MPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVS 381 + + Y + + + + + Y+ + Q A Sbjct: 732 TINMTLVKEKYNVWIALLNLENMYGTKESFDKTFEEAV--RCNDSLEIYLNVIQMLA--- 786 Query: 382 IDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEK 441 +++ + A+E +++ + + + + K R+V++ Sbjct: 787 ---------TSGKLQEMEEKIKKVRAKEKQNTKMWLEISRI----YYSLGQFKEARNVKE 833 Query: 442 KLKESLKKDRARVQVGAISNFGLLEMS 468 +S+ D+ R Q I FG++E Sbjct: 834 SALKSI-LDKKR-QFDLIVKFGIMEFQ 858 >gi|268566341|ref|XP_002639696.1| C. briggsae CBR-TAG-214 protein [Caenorhabditis briggsae] Length = 1173 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 2/126 (1%) Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGV--IRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 + ++ + E ++ ++ E + +++ R+R D +D+ Sbjct: 875 EADSDHEQERKERKKNRGESKEKHEKERRYIDEQDKKKERKRDRNADEYDSDAPQVKIKR 934 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + D + + E D E E N K+ Sbjct: 935 EEKNKDDQQDRDRKKEDPENGKDWRRKERDREVKDKKHDKYKEKEREDDNEKVKQREKEK 994 Query: 717 RWWKRR 722 K R Sbjct: 995 ERQKER 1000 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 1/125 (0%) Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 + Q+ + ES E + + ++R+R R +D + Sbjct: 875 EADSDHEQERKERKKNRGESKEKHEKERRYIDEQDKKKERKRDRNADEYDSDAPQVKIKR 934 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + ++ D +P + + E + +D + E Sbjct: 935 E-EKNKDDQQDRDRKKEDPENGKDWRRKERDREVKDKKHDKYKEKEREDDNEKVKQREKE 993 Query: 712 IVKKT 716 ++ Sbjct: 994 KERQK 998 >gi|327285131|ref|XP_003227288.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Anolis carolinensis] Length = 2471 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 9/149 (6%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 + Q + E + + A L + + V E TG ++RR+ Sbjct: 420 DESRKLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEETGERKRRRKG 479 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 R P + G S +PS IT + + ++N D + Sbjct: 480 GGERTPKEERPRKGRGQGGSGK-------SKGRGKPSTITPVVGKKRKRNASSDNSDAEV 532 Query: 695 PPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P P E +S + R KR+K Sbjct: 533 MPSQAPHEEEESSIQKR--RSNRQVKRKK 559 >gi|291409415|ref|XP_002720996.1| PREDICTED: serine/threonine-protein kinase PRP4K [Oryctolagus cuniculus] Length = 994 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 5/158 (3%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I + + + ++ + + + K +D +E+ Sbjct: 267 INESRSRDRGKKSRSPIDLRGKSKDRRSRSKERKSRRSEIDKEKKPIKSPSKDASSGKEN 326 Query: 625 TGVIRKRRRR-RRRRRPATDHHDAGVVSDVSSIQNVI---DDSFDMYMEPSDITNHNLLE 680 +R R +RR + D S I + S + P LE Sbjct: 327 RSPS-RRPGRSPKRRSLSPRPRDKSRRSRSPLINDRRSKQSKSPSRTLSPGRRAKSRSLE 385 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 S ++ S S + RW Sbjct: 386 RKRREPDRRRLSSPRTRPRDDILSRRERSKDVSPINRW 423 >gi|195166974|ref|XP_002024309.1| GL14973 [Drosophila persimilis] gi|194107682|gb|EDW29725.1| GL14973 [Drosophila persimilis] Length = 575 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 15/155 (9%), Positives = 36/155 (23%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 IEK +A A + + EA K + +++ Sbjct: 292 QPEKIIEKQEIEKAEKTGKKVEPKTKPAADEGDGLAEGKKGEAKAKAEKDSDKDADKEST 351 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 + +K + + P A S D ++ + Sbjct: 352 STSTPAKKDKKEGQPKTASTPDPKQSSAKKASPAGKPGQANDAEGTGDVKERNTEKTETE 411 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + S+ +++ + + K Sbjct: 412 PAAGKKQPPPPASAAAEPSSESIDNKKKADKTVEK 446 >gi|115976443|ref|XP_001187228.1| PREDICTED: similar to centromere protein CENP-C [Strongylocentrotus purpuratus] Length = 1303 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 5/157 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + Q + + D + + + + Q + P+ E E + S E Sbjct: 187 QSELSQEEGDEQTETEEDDASGPVEHDDQQSSQTTSEPSSPQEEVPEPQAETTSSSEQGT 246 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R +RR RP D S +F E + +E Sbjct: 247 TAQTRGSKRRSTRPDGDLSGPVPRETRSRKSISQSKNFVENEEMDEREAVKAVETRGRRS 306 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 T + S+ + + ++ S+ +RRK Sbjct: 307 TRQSNASVLNENELQKDNEKSAKKGA-----DTRRRK 338 >gi|242004359|ref|XP_002423063.1| Cell growth-regulating nucleolar protein, putative [Pediculus humanus corporis] gi|212505994|gb|EEB10325.1| Cell growth-regulating nucleolar protein, putative [Pediculus humanus corporis] Length = 385 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 41/153 (26%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + L + + ++ + QD K+ES + +D ++S Sbjct: 155 EANKEQKQLTSKQVTKPVKQDSNEQKQSKQDPKQDPKQSKQSKNESKQKGEDGKQVKQSK 214 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++++ + + S + N+ E Sbjct: 215 SDSKQQKPSKDEVTQQKEKKGDSKEKKPSKGEVKQQKGDKEKKPKKSENKENIAEKQESP 274 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 T + PP S + + KK + Sbjct: 275 KTASKQAVKPPKSNNNQQGEGEKAASKPKKVKT 307 >gi|159129088|gb|EDP54202.1| conserved hypothetical protein [Aspergillus fumigatus A1163] Length = 1350 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 1/154 (0%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 +EAR G +N ++ L +K K + + + H G + + V Sbjct: 551 FEARRGSQVNGIMDPSLQNKESVHPKDASMHEASSARHPPGPTWPPRAAAGPPDSVANAS 610 Query: 602 ALLPIPKSESLEDIQDN-IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + QD + + V + R + +R A + ++ + I Sbjct: 611 RAASQSSVHPAPEAQDATAQAPQEDPVAMQERIMKEKRLEARQRRLEQEEKEEAAKRERI 670 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 + P + E+ E Sbjct: 671 RQKLEALGPPPEKPKSKNKESREGDKAEAKATPT 704 >gi|313244779|emb|CBY15486.1| unnamed protein product [Oikopleura dioica] Length = 1258 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 53/245 (21%), Gaps = 15/245 (6%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 +I+ V + + V + G I+S S + L+S V Sbjct: 858 QIKEGVDQGKSYVSSAITGTELIKSSDSFESTPLKSP---------GVASESEPPTVTPQ 908 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 + ++ I V + + + + + + P Sbjct: 909 ASDLDDDALMALAKE----IVVPGDKKKQKQATPVTRKLEAEKEKTPSTRARRSRVMPPR 964 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + E E L P + ++ + R +R RR T Sbjct: 965 EDTSEESSGPEDRLTSPLKPRV--LKKRKQESAKSSEDRPKRIRRGNTPEPTVETTTPSR 1022 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + L + + E + Sbjct: 1023 PQRTRGGPTSASRSRKTEPSEPKLPDRLTRDETPKGRQTRREGSRATPKVEKTEPKTIKR 1082 Query: 711 PIVKK 715 K+ Sbjct: 1083 EQRKE 1087 >gi|221122389|ref|XP_002164770.1| PREDICTED: similar to tight junction protein ZO-1 [Hydra magnipapillata] Length = 1695 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 39/147 (26%), Gaps = 3/147 (2%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ + +++ ++ +D + ++ +E Sbjct: 219 KSEKSHRSRSKNREDNAEGEKSHRSRSKNREDAETGEKSEKSHRSRSKNREDAETGEKSE 278 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R R R R D S ++ + + T +L + +E Sbjct: 279 KSHRSRSRNRE---DAETGEKSHRSRSKNREDPETEEKSLRSKSKTREDLSKTTESEKSE 335 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKK 715 S S ME NS + Sbjct: 336 KIPKSQSKASLGGMEKENSDRQKSKTR 362 >gi|195504329|ref|XP_002099032.1| GE10693 [Drosophila yakuba] gi|194185133|gb|EDW98744.1| GE10693 [Drosophila yakuba] Length = 1312 Score = 39.6 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 39/153 (25%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 +A + S++ S + E KS E+ + + + V+ Sbjct: 268 DSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEDDRKSSGDEEEAEEAPNSSDSEVM 327 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R+RRR++ D D + H Sbjct: 328 PQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKNSSGESDGDGDDDKQKNKRKHIRKI 387 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + + I + + + R Sbjct: 388 IKTKDLDLTTKEAAKEEDDRRKRIEDRQKLYNR 420 Score = 39.2 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 5/160 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K + S+ E EA + + + D +EE+ Sbjct: 260 QKSKTMSTDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEDDRKSSGDEEEAEEAP 319 Query: 626 GVIRKR--RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +R+RRR+ + + + + + + Sbjct: 320 NSSDSEVMPQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKNSSGESDGDGDDDKQKN 379 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + ++ + ++ R R+K Sbjct: 380 KRKHIRKIIKTKDLD---LTTKEAAKEEDDRRKRIEDRQK 416 >gi|115623726|ref|XP_793941.2| PREDICTED: similar to centromere protein CENP-C [Strongylocentrotus purpuratus] Length = 1416 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 5/157 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + Q + + D + + + + Q + P+ E E + S E Sbjct: 187 QSELSQEEGDEQTETEEDDASGPVEHDDQQSSQTTSEPSSPQEEVPEPQAETTSSSEQGT 246 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R +RR RP D S +F E + +E Sbjct: 247 TAQTRGSKRRSTRPDGDLSGPVPRETRSRKSISQSKNFVENEEMDEREAVKAVETRGRRS 306 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 T + S+ + + ++ S+ +RRK Sbjct: 307 TRQSNASVLNENELQKDNEKSAKKGA-----DTRRRK 338 >gi|70989663|ref|XP_749681.1| conserved hypothetical protein [Aspergillus fumigatus Af293] gi|66847312|gb|EAL87643.1| conserved hypothetical protein [Aspergillus fumigatus Af293] Length = 1350 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 1/154 (0%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 +EAR G +N ++ L +K K + + + H G + + V Sbjct: 551 FEARRGSQVNGIMDPSLQNKESVHPKDASMHEASSARHPPGPTWPPRAAAGPPDSVANAS 610 Query: 602 ALLPIPKSESLEDIQDN-IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 + QD + + V + R + +R A + ++ + I Sbjct: 611 RAASQSSVHPAPEAQDATAQAPQEDPVAMQERIMKEKRLEARQRRLEQEEKEEAAKRERI 670 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 + P + E+ E Sbjct: 671 RQKLEALGPPPEKPKSKNKESREGDKAEAKATPT 704 >gi|115968092|ref|XP_001190252.1| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) [Strongylocentrotus purpuratus] Length = 5353 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 10/166 (6%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+ G G + PS ++ + E ++ EE Sbjct: 4178 QIQVGHISAREGEKPRGRGRPRKYPSVNEVSRDQIEARKRGRDSACADFEVLEKGQQEEE 4237 Query: 624 STGVIRKRRRRRRRRRPA------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 ++ R R ++P +++ +AG S + S + + P Sbjct: 4238 GMPKRKRGRPRLSDKQPEKDQFVDSENENAGDDSKKRMRGELTSTSDEEHHGPEQDQPRL 4297 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + A + + + + SS + R RK Sbjct: 4298 RTRSSAK-RLKPGEEPVEDGEETLDSKPSVSSRS---EERQVHPRK 4339 >gi|262193480|ref|YP_003264689.1| hypothetical protein Hoch_0155 [Haliangium ochraceum DSM 14365] gi|262076827|gb|ACY12796.1| hypothetical protein Hoch_0155 [Haliangium ochraceum DSM 14365] Length = 424 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 16/54 (29%) Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 +R R+ RR D+ + + QN D D D N Sbjct: 352 ERRDNRQERRDNRQDNRQERRDNRQDNRQNRRDARQDNRQNRRDARQDNRQNRR 405 >gi|221132685|ref|XP_002159410.1| PREDICTED: similar to budding uninhibited by benzimidazoles 3 homolog [Hydra magnipapillata] Length = 538 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 61/223 (27%), Gaps = 7/223 (3%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 R + A+S R E + + H+ V+ + E RF + Sbjct: 244 RVRFPKAMSGERRTHEAVGDRAIDCYRMTVHNCVMD-------KVVKTLEERFKAQDTLF 296 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + + + + V+ + T + + + + DE + Sbjct: 297 ADMACLNPENFYDIKKNVEQIKKTVPEEYLGMNLAENRNDNDELENDEETAVSSSFSKDK 356 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + S ++ V ++ R R+ + + + ++ + + Sbjct: 357 EAHGKCKSCKNCPVASRKLERNSNRKLERNSNRKLERNSNRKLERNSNRKLERNSNRKLE 416 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 N N + + + +S+ + + + Sbjct: 417 RNSNRKLERNSNRKLERNSNRKLERNSNRKLERNSNRKLERNS 459 >gi|242006506|ref|XP_002424091.1| hypothetical protein Phum_PHUM106900 [Pediculus humanus corporis] gi|212507397|gb|EEB11353.1| hypothetical protein Phum_PHUM106900 [Pediculus humanus corporis] Length = 845 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 4/192 (2%) Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 Y + + I + E++ I+ EL + A K SD+ + Sbjct: 438 YGSDDSESEISDPESKSSRKIDSDSEAELQTAQ----EIESRLAEEMEKEKRNSDNNSSD 493 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 D+ + +DE + + N + R++RR+ + H + Sbjct: 494 NDEQGQVQNEDEKSKIKSDTHGKRESSRNQGHSDEGSGGRQKRRKFVEEPDESGRHKSSK 553 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 S DS+D + + N + + D + SSNS S Sbjct: 554 NKADSHKGRKNSDSYDSDADTKTSDDKNQKKRRKQHGGNDDDDDDEDSDDASLRSSNSHS 613 Query: 710 DPIVKKTRWWKR 721 + + R Sbjct: 614 VRSKRTKKKRDR 625 >gi|255956119|ref|XP_002568812.1| Pc21g18180 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590523|emb|CAP96715.1| Pc21g18180 [Penicillium chrysogenum Wisconsin 54-1255] Length = 597 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 40/154 (25%), Gaps = 6/154 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E +P + +A K E V E + ++ ++ + E Sbjct: 146 EATAPEEQKSAAAPFQPQMDEAAQDAKKEEPVKAQEKSVSAAQTSEVDTELSTPLPVEEA 205 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++R+RR + T A + + D D Sbjct: 206 LEDTRKRKRRSQSPAPTLEEIANRKARAKETTPRVLLKDDEVAASRD------EGLSKLK 259 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E V P ++S P + R+ Sbjct: 260 SEEQKTVEDHADKQPVETQTDSHQTPTKQDARFR 293 >gi|115908476|ref|XP_784919.2| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) [Strongylocentrotus purpuratus] Length = 5304 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 10/166 (6%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+ G G + PS ++ + E ++ EE Sbjct: 4129 QIQVGHISAREGEKPRGRGRPRKYPSVNEVSRDQIEARKRGRDSACADFEVLEKGQQEEE 4188 Query: 624 STGVIRKRRRRRRRRRPA------TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 ++ R R ++P +++ +AG S + S + + P Sbjct: 4189 GMPKRKRGRPRLSDKQPEKDQFVDSENENAGDDSKKRMRGELTSTSDEEHHGPEQDQPRL 4248 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + A + + + + SS + R RK Sbjct: 4249 RTRSSAK-RLKPGEEPVEDGEETLDSKPSVSSRS---EERQVHPRK 4290 >gi|297281681|ref|XP_001088135.2| PREDICTED: protein ELYS isoform 3 [Macaca mulatta] Length = 2274 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 7/182 (3%) Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576 ++ T + + +Q+ I+ + ++ V + + + N Sbjct: 1873 SSVTKRTPRRIKRSVESQESVEII-----NDLKVSNVTSPSRMIRKLRSANLDASENIGN 1927 Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 SD Q P + + + +L+ Q ++ +E I ++R R R Sbjct: 1928 KPDDKSSDEQLPIKRIRRVRGREVSPS-DVREDSNLDSSQLSLQAELDMSAIPRKRGRPR 1986 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 + P+ D V + S + S S + G ++ V Sbjct: 1987 KIHPSEDVGSK-AVKEEGSPKKKEAPSIKRRSTRSTAAKSENTDVGKPASGKSILVPNKE 2045 Query: 697 VS 698 +S Sbjct: 2046 LS 2047 >gi|221481412|gb|EEE19802.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 1656 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 8/152 (5%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + + + + +E P + + + + + Sbjct: 535 EREAVAKDPKEGNADAIVGTDSIEARVAVSAERTEEGGKPAEAVSAADASKSAEQGRQKS 594 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 K+ RR R+R + G + ++ + S + E + Sbjct: 595 TKRGKKSHRRNRKRSKSKKSHTGSSAPTTAGVSAPTGSLPLSSE--------TPTSAEKE 646 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 TE S P + + S S D K Sbjct: 647 ATEFLLSSGFPAISAVLASRGSKLDAAKKSKG 678 >gi|116253710|ref|YP_769548.1| TolA outer membrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258358|emb|CAK09461.1| putative TolA outer membrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 379 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 17/197 (8%), Positives = 40/197 (20%), Gaps = 17/197 (8%) Query: 541 EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD 600 + E + +++V + +K + +Q + + Sbjct: 30 KVEDFEAMPVDLVPVESITQMQQGDKKAPKKETSAPVPTTRPPIAQPAENAGDNNVDLKT 89 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS-DVSSIQNV 659 + S S ++ + + + V S V Sbjct: 90 PPVPNAKPSNSEAAAANSSDKPLPKTDPKPNDVKEIVKEETEVEQPKEVASIPPPKPVEV 149 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTEN----------------YDVSIPPVSTPEME 703 + + A +N PP TPE Sbjct: 150 TPPKPEEKPTEEQAKPEEPPKPDAEALPDNVPTPVAKPQVKPPEPQKPAEKPPEKTPEQP 209 Query: 704 SSNSSSDPIVKKTRWWK 720 + K + + Sbjct: 210 KTADVPTDKKKADKKQE 226 >gi|6469847|gb|AAF13456.1| unknown [Streptococcus pneumoniae D39] Length = 701 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 15/183 (8%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + E R I + V +A + Sbjct: 320 QKEEDRRN-----YPTNTYKTLDLEI---AESDVKVKEAELELVKEEAKEPRDEEKIKQA 371 Query: 600 D-EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + ++ LE+I+ + E + + + +PA A Sbjct: 372 KAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPATQPEKPAPK 431 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E +D E +E + P+ E + P KT W Sbjct: 432 PEKPAEQPKAEKTD---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGW 485 Query: 719 WKR 721 + Sbjct: 486 KQE 488 >gi|225469075|ref|XP_002268317.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 828 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 24/247 (9%), Positives = 64/247 (25%), Gaps = 9/247 (3%) Query: 470 QRIRSSVLESTTKVCTYCKGAGYIRSQSSVA---LSILRSVEEYLLQYTAHNIIVHTHSD 526 + VLE T C +C I+ L I R+ + + + + + + Sbjct: 132 PNADADVLEDETASCLWCWETRDIKLMPKSVRGLLKIRRTCRKKVHERISAVSAMINALE 191 Query: 527 VVLYLLNQKRATIVEYEARFGV------SINVVIGIELADKLFYIEKGSPVQALVNTGHK 580 N K I E V + + ++ + + ++ + Sbjct: 192 KPESDQNYKYDLIKASEKLAKVLNEADIRLLIESMVQKDGADMAEKDVKREEKILIKQLE 251 Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 + + +++ ++ + + E +++ R+++ Sbjct: 252 KKKREDEKEKKRIERELQKEKLQNERELKRLQDEAEKDERRREKEESEIRKQLRKQQEEA 311 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D Q I + +N T+ + Sbjct: 312 EKDQRRREKEEAELKKQLAIQKQASIMERFVKRNKNNSTSLNDQSSTKATTSDSSTNKSE 371 Query: 701 EMESSNS 707 +M S + Sbjct: 372 KMPESVT 378 >gi|195113405|ref|XP_002001258.1| GI22072 [Drosophila mojavensis] gi|229488246|sp|B4KA44|EIF3A_DROMO RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10 gi|193917852|gb|EDW16719.1| GI22072 [Drosophila mojavensis] Length = 1129 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 38/135 (28%), Gaps = 8/135 (5%) Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 D+ ++ + +++ ++ + E + R + R R P D + Sbjct: 848 DEKRRQQYEKQRAKEEEAERKIQEDRERLAREVAVERERSEKERDVWR-PRGDRSERPSA 906 Query: 651 SDVSSIQNVID--DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + + D ++ + PE + ++ Sbjct: 907 APAGGASEWRRNAPTSDRNDRNDRNERNDRSDRNDRNDRSERIERSDRNDRPERKDTDGG 966 Query: 709 SDPIVKKTRWWKRRK 723 +D + W RR+ Sbjct: 967 AD-----SSWRVRRE 976 >gi|170725446|ref|YP_001759472.1| band 7 protein [Shewanella woodyi ATCC 51908] gi|169810793|gb|ACA85377.1| band 7 protein [Shewanella woodyi ATCC 51908] Length = 604 Score = 39.6 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 16/182 (8%), Positives = 46/182 (25%), Gaps = 1/182 (0%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 ++ +KR + E + I + +E + IE+ L+ ++ + Sbjct: 217 IIEEKRKETNDIEQENRIKIEMR-NLEAEKESLDIEQAEQEAKLIQQQALDFKRAEQKAE 275 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + E E + + +++ ++R+ + R Sbjct: 276 ILKQQEQKTREEREAEIAKERAIESAEIEKTKDIETREIEKRKAIEQSRIQQQRDIEVAE 335 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 D + + +E T E+ + ++ Sbjct: 336 QDKQIAIAQKSEEESAARAKAAEAEKLKVEKLEAVITTRQVAEANRSKEIEVIDARKEAE 395 Query: 711 PI 712 Sbjct: 396 RE 397 >gi|55378075|ref|YP_135925.1| hypothetical protein rrnAC1281 [Haloarcula marismortui ATCC 43049] gi|55230800|gb|AAV46219.1| unknown [Haloarcula marismortui ATCC 43049] Length = 863 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 17/178 (9%), Positives = 40/178 (22%), Gaps = 5/178 (2%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 + +++ L ++ S A D A + + V A Sbjct: 189 MPVDIEPIEILKPPEDETDEQSADPAAAGVDPLDAGDETAATDEPADAGVADAAATGEEE 248 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + + T R R A A + + Sbjct: 249 PDGAPQRDDARSDESVETPPEATRDSGTDRADDAGQTRTAAESTPDRGPASSGPPGSKAA 308 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVST-----PEMESSNSSSDPIVKKTRWWK 720 + + + E + P S + + ++P ++T + Sbjct: 309 GANPGRSRRSSESDEQPNVDEKPNADSRPDSRVTDRATADTDTATQTEPTERETGVRE 366 >gi|145231873|ref|XP_001399406.1| nuclear protein export protein Yrb2 [Aspergillus niger CBS 513.88] gi|134056314|emb|CAK37546.1| unnamed protein product [Aspergillus niger] Length = 491 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + V K S + AP + + A S + + +E Sbjct: 37 GERPVRHKLKETSITSAPKASTDSDANMTGSAQEGSSSRASSRGRKRSFDEDEPEKNEDD 96 Query: 631 -RRRRRRRRRPATDHHDAGVVSDVS---SIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR+R R ++ +A DV Q + + D+ + + L ++ + Sbjct: 97 AGHRRKRSRDSNSEEENANADVDVEIPSQPQKGEEVTRDIAVPKKKRSRDQLDKDESTVG 156 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E S P K+ Sbjct: 157 ASGEKADQNAAEETSTEKSEVEGQPEKKR 185 >gi|29347005|ref|NP_810508.1| transcription termination factor Rho [Bacteroides thetaiotaomicron VPI-5482] gi|29338903|gb|AAO76702.1| transcription termination factor rho [Bacteroides thetaiotaomicron VPI-5482] Length = 722 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 11/149 (7%), Positives = 34/149 (22%), Gaps = 4/149 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + +K + + + ++ E Sbjct: 68 RSRTAAPKKEEKVAPAAKNAEVTKNKENAPAAKPQQQPKEEAANKAKEAPVAEPKAEKAA 127 Query: 627 VIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +++ R R+ ++ + + + + P+ E Sbjct: 128 P-KRKVGRPRKDANIAEKAENKEVENAKPIVKPTEEKAVAEKTVVAPAAEKATPTQETEK 186 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPI 712 V+ PV + S D Sbjct: 187 KVKENKPAVAEKPVIAKPQKKSAPVIDEE 215 >gi|309366966|emb|CAP20511.2| CBR-HCP-6 protein [Caenorhabditis briggsae AF16] Length = 1739 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 28/278 (10%), Positives = 73/278 (26%), Gaps = 26/278 (9%) Query: 464 LLEMSRQRIR-------SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL---Q 513 ++E +R++ R ++E+ + + + I + +E + + Sbjct: 1369 VVEFNRRQKRLTKTPPPPEMIETEVPEDGNVEMTSAEKGAGVGEVEIEKEADESMRTPEK 1428 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRA----------TIVEYEARFGVSINVVI---GIELAD 560 + L ++++ TI + G I+ L D Sbjct: 1429 KKNPLLDNLKTPATALRSRTEEQSTPNSRLLSPTTIKKIRRSVGALIHTEACLNPPNLED 1488 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 E S + N + +E + +DE S+ + Sbjct: 1489 TQVVEEGLSTSRREKNNTNPKEKTIVEDEEPIEVEKIVEDEP--QSDSRRSVVAAAEQRA 1546 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E + + ++ + ID ++ +P I + Sbjct: 1547 EESQKDLEEVQEQQIEDEDAVARRRSRRRKTPTYDDDESIDRDGKVWKKP-KIVAKSPEN 1605 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + + E++ K+ Sbjct: 1606 EATNISSANVTLRRSRRVSRTTEAAVVEKPKQRKRKST 1643 >gi|118389557|ref|XP_001027862.1| AT hook motif family protein [Tetrahymena thermophila] gi|89309632|gb|EAS07620.1| AT hook motif family protein [Tetrahymena thermophila SB210] Length = 1786 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 9/163 (5%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + S +++IE + + + S E Sbjct: 1367 QDEVIEQDEEDDEQEEEDMSAEQDIEEEDKKNKKQVGRRGRKPASTKSMGSSSEKESPKT 1426 Query: 630 KRRRRRRRRRPAT-------DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 RR RR + +H + + + ++ T E G Sbjct: 1427 NRRGRRSASKENKISEESDEEHKETDNEDQEEELSQKKTRGRGRPKKSNEKTQSQEEEEG 1486 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSD--PIVKKTRWWKRRK 723 + ++ SS P KK++ +K Sbjct: 1487 QDNSQSDEQEEEVEEEEAPRKTRGSSKKSTPAQKKSKTRSSQK 1529 >gi|10434841|dbj|BAB14396.1| unnamed protein product [Homo sapiens] Length = 914 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 34/163 (20%), Gaps = 1/163 (0%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++ + + + P + Sbjct: 748 PKAEVQSKRKRTEGSSPPDSKNKGPTVKASKEKHADGATKTPAAKRPAARDRSSQPPKKT 807 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 S + V ++ + P+ + SI + + + + Sbjct: 808 SLKENKVKIPKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQKGAGESS-SRPQK 866 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + P TPE ++ K +R+ Sbjct: 867 ATNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKLDCSHSKRR 909 >gi|238508431|ref|XP_002385409.1| RNA binding protein, putative [Aspergillus flavus NRRL3357] gi|317157950|ref|XP_001826678.2| nucleolar protein 12 [Aspergillus oryzae RIB40] gi|220688928|gb|EED45280.1| RNA binding protein, putative [Aspergillus flavus NRRL3357] Length = 527 Score = 39.6 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 6/167 (3%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 L +EK + + + Q E + S + Sbjct: 49 PSLPTTSSAVEKPAAGDDSSEDVSEPEDEDQVMQEASEASSDAGGEPAQAASEPPSRKRK 108 Query: 616 QDNIVSEEST-----GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + E + ++ ++RR A G D ++ + DD + Sbjct: 109 RAAGEDLEESYMRRIAKEEQKEEQKRRAEKAKRQKGEGEEEDEATSTDKSDDENEDESSD 168 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS-SDPIVKKT 716 D G ++ D+ + SN + KKT Sbjct: 169 EDEEVAIPKHETVTGDAQSSDIDKSNRTVFLSNVSNEAIKSKSAKKT 215 >gi|307105850|gb|EFN54098.1| hypothetical protein CHLNCDRAFT_136232 [Chlorella variabilis] Length = 815 Score = 39.2 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 37/148 (25%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + + + +S+G +++++ Sbjct: 45 SPPASKPAAKAGKGSRAAAAAPPAKLPAAKQRGQPVKQPAMAAAKPVKSSGAKQRQQQEA 104 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 A + D + Q S E + G + + Sbjct: 105 SLAAAAARRLASKRGKDAAEPQKAGIRSGGKPAEQQKRQQAAGKKAGGGARDKAGWAAPQ 164 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S+ E +S+ S D ++ R +R+ Sbjct: 165 AASSDEETTSSGSKDEEPQQQRPGPKRQ 192 >gi|302410339|ref|XP_003003003.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261358027|gb|EEY20455.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 628 Score = 39.2 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 37/153 (24%), Gaps = 3/153 (1%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 + S S + + + P + I + +KR Sbjct: 94 NSPSPNQTPTDISSSHDSKKPKMASIAPGKTATPTSAPSKRKRITPAEKKAQEDEKEKKR 153 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R +RR + A ++ + D E + + N Sbjct: 154 IEREAKRRDI-EEKKAKADAEKEEKKKDRDAKRHKKEEEARKVEEEKAKKARAQPKLNMF 212 Query: 692 VSIPPVSTPEMESSNSSSDP--IVKKTRWWKRR 722 P E +S ++ P K+ R Sbjct: 213 FKTPATPKTESPASETAVKPAVEPKEDGAESPR 245 >gi|297259919|ref|XP_002798212.1| PREDICTED: PHD finger protein 20-like [Macaca mulatta] Length = 925 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 18/209 (8%), Positives = 58/209 (27%), Gaps = 8/209 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENY 690 S + N + + ++EN Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENT 319 >gi|15904036|ref|NP_359586.1| choline binding protein A [Streptococcus pneumoniae R6] gi|116515359|ref|YP_817402.1| choline binding protein A [Streptococcus pneumoniae D39] gi|8163644|gb|AAF73779.1|AF154012_1 surface protein PspC [Streptococcus pneumoniae D39] gi|15459699|gb|AAL00797.1| Choline binding protein A [Streptococcus pneumoniae R6] gi|116075935|gb|ABJ53655.1| choline binding protein A [Streptococcus pneumoniae D39] Length = 701 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 15/183 (8%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + E R I + V +A + Sbjct: 320 QKEEDRRN-----YPTNTYKTLDLEI---AESDVKVKEAELELVKEEAKEPRDEEKIKQA 371 Query: 600 D-EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + ++ LE+I+ + E + + + +PA A Sbjct: 372 KAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPATQPEKPAPK 431 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E +D E +E + P+ E + P KT W Sbjct: 432 PEKPAEQPKAEKTD---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGW 485 Query: 719 WKR 721 + Sbjct: 486 KQE 488 >gi|268560300|ref|XP_002646178.1| C. briggsae CBR-HCP-6 protein [Caenorhabditis briggsae] Length = 1714 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 28/278 (10%), Positives = 73/278 (26%), Gaps = 26/278 (9%) Query: 464 LLEMSRQRIR-------SSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL---Q 513 ++E +R++ R ++E+ + + + I + +E + + Sbjct: 1344 VVEFNRRQKRLTKTPPPPEMIETEVPEDGNVEMTSAEKGAGVGEVEIEKEADESMRTPEK 1403 Query: 514 YTAHNIIVHTHSDVVLYLLNQKRA----------TIVEYEARFGVSINVVI---GIELAD 560 + L ++++ TI + G I+ L D Sbjct: 1404 KKNPLLDNLKTPATALRSRTEEQSTPNSRLLSPTTIKKIRRSVGALIHTEACLNPPNLED 1463 Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 E S + N + +E + +DE S+ + Sbjct: 1464 TQVVEEGLSTSRREKNNTNPKEKTIVEDEEPIEVEKIVEDEP--QSDSRRSVVAAAEQRA 1521 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 E + + ++ + ID ++ +P I + Sbjct: 1522 EESQKDLEEVQEQQIEDEDAVARRRSRRRKTPTYDDDESIDRDGKVWKKP-KIVAKSPEN 1580 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + N + + E++ K+ Sbjct: 1581 EATNISSANVTLRRSRRVSRTTEAAVVEKPKQRKRKST 1618 >gi|328766214|gb|EGF76270.1| hypothetical protein BATDEDRAFT_92860 [Batrachochytrium dendrobatidis JAM81] Length = 666 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 28/124 (22%), Gaps = 4/124 (3%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 V G S P ++ V + E P ++ E E+ + ++ Sbjct: 390 DDKGVEGGKTSRGRSPLPDQVRSNTAVKEKEEDRSQPVTKGPE----TKQPRETDRLEQR 445 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 +R R D D ++ S Sbjct: 446 EGKRSRTHSEDNDRLSRKRSPDGRKKEDRGSGRESRREGASKDVESQKDSKEEQRSDRGR 505 Query: 691 DVSI 694 D S Sbjct: 506 DYSR 509 >gi|308062330|gb|ADO04218.1| 30S ribosomal protein S1 [Helicobacter pylori Cuz20] Length = 552 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|294788741|ref|ZP_06753982.1| translation initiation factor IF-2 [Simonsiella muelleri ATCC 29453] gi|294483223|gb|EFG30909.1| translation initiation factor IF-2 [Simonsiella muelleri ATCC 29453] Length = 950 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 14/171 (8%), Positives = 36/171 (21%), Gaps = 4/171 (2%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 ++ EK + K + ++ P+ Sbjct: 119 SLKTENTPNSSSIETEKSEKKSDKSHQSEKSNKPEGESKEKSKRKRGGKNRQKEKEPEPL 178 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ----NVIDDSFDM 666 N ++ RRRR + + + I+D+ Sbjct: 179 PTPVEVVNAEEAARRAQEEEQDRRRREYQEKLQREKEERAERQARREAAKLQAIEDAKTA 238 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 D ++ + T + + + + K + Sbjct: 239 AQAKKDAQRTAKPSEEKRAKKDDETKNQKSNKTDKSDKNIKTKTDKPKSSG 289 >gi|189239180|ref|XP_001807607.1| PREDICTED: similar to CG6599 CG6599-PA, partial [Tribolium castaneum] Length = 1334 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 28/286 (9%), Positives = 85/286 (29%), Gaps = 14/286 (4%) Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 VE + E K+D + + +S ++E + +++S LE + +++ + Sbjct: 582 VEAAVHEPPKQDVEKSEADKVSQTDIVEKESKIVQTSELEKDQVEENVQE----VKAAET 637 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 I+ VE + + + ++ ++ + + + ++ + Sbjct: 638 QVREIVEKVELKKNEKVIEQLQEKITDESKEKGVSVEKE--KDLDKKSDETV-----DQT 690 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + +E+ L + + Q ++ + + + Sbjct: 691 TKEEKSVEESKDENDLKEVETTQEFEIVDENEKGGKVVTEQKLEIVEEKEKSLEKPEDEE 750 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E K + T+H + +I + ++ + + Sbjct: 751 KQVIEEKSSEEKNVEGESKNAEETEH--VTQKKEDETIVSKKEEFEEKTDKEERSNAAET 808 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW-WKRRK 723 L++ G E+ + ++ K R K+R+ Sbjct: 809 LDDKPPGNGEDVSAKSETEKNLDEKAKEKKLKKQKMKKRSERKKRQ 854 >gi|114107784|gb|AAI23287.1| LOC733425 protein [Xenopus laevis] Length = 479 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 44/149 (29%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SDS+ + K +DEA S+S ++ + + +S Sbjct: 246 RAASDSEDEAPAKRADSDSEDEAPAKRAASDSEDEAPPKRAASDSEDEAPPKLAASDSED 305 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R A A D + + DS D ++ Sbjct: 306 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKGAASDSEDEAPPKRKV 365 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + D + + + SS D K Sbjct: 366 SSSEDDAPSKQAASTSKEKKSSEDKTRGK 394 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 43/146 (29%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + SDS+ + K +DEA S+S ++ + +S Sbjct: 220 RVASDSEDEAQAKRAASDSEDEAPAKRAASDSEDEAPAKRADSDSEDEAPAKRAASDSED 279 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R A A D + + DS D ++ Sbjct: 280 EAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAASDSEDEAPPKLAASDSEDEAPPKRAA 339 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712 +++ D + P + + E + Sbjct: 340 SDSEDEAPPKGAASDSEDEAPPKRKV 365 >gi|317177805|dbj|BAJ55594.1| 30S ribosomal protein S1 [Helicobacter pylori F16] Length = 552 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLADFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|325120556|emb|CBZ56110.1| putative PAN domain-containing protein [Neospora caninum Liverpool] Length = 3397 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 31/257 (12%), Positives = 60/257 (23%), Gaps = 10/257 (3%) Query: 466 EMSRQRIRSSVLES-TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT- 523 + R+ R S+ + T G G I+ +S+ R Sbjct: 202 QSKRREGRKSLPKREKTGDGPSVSGEGGIKEESNEVKK--REERRKSRSKREKAHDGTMV 259 Query: 524 -----HSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNT 577 +V + R ++ + E G S++ G E Sbjct: 260 SEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESNEEKKRGDRRKSRSKRE 319 Query: 578 GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 G+ + ++ + E +PK E D + ++R R Sbjct: 320 KAHDGTRESEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESNAGKKRGDR 379 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 R+ + A + V + E + Sbjct: 380 RKSRSKRETAHDGTRVLEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESN 439 Query: 698 STPEMESSNSSSDPIVK 714 + E S K Sbjct: 440 EVKKREERRQSRSKREK 456 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 23/210 (10%), Positives = 47/210 (22%), Gaps = 1/210 (0%) Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARF-GVSINVVIGIELADKLFY 564 + +V + R ++ + E G S++ G E Sbjct: 315 RSKREKAHDGTRESEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESNAGK 374 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 G+ + ++ + E +PK E D + Sbjct: 375 KRGDRRKSRSKRETAHDGTRVLEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGN 434 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + ++R RR+ + A + VS + E Sbjct: 435 EEESNEVKKREERRQSRSKREKAHDGTMVSEEFEGEEVKASKRREGRKSLPKREKTGDGP 494 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + E S K Sbjct: 495 SVSGEGGNEEESNEVKKREERRKSRSKREK 524 Score = 37.6 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 2/153 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + + S+ K + ++L K+ + +EE + Sbjct: 448 RQSRSKREKAHDGTMVSEEFEGEEVKASKRREGRKSLPKREKTGDGPSVSGEGGNEEESN 507 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 ++KR RR+ R HD VS+ + V + + +G Sbjct: 508 EVKKREERRKSRSKREKAHDGTRVSEEFEGEAV--KASKRREGRKSLPKREKTGDGPSVS 565 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 E E S S Sbjct: 566 GEGGIKEESNEVKKRGERGKSRSKREKAHDGTR 598 >gi|255586113|ref|XP_002533720.1| conserved hypothetical protein [Ricinus communis] gi|223526375|gb|EEF28665.1| conserved hypothetical protein [Ricinus communis] Length = 883 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 6/135 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS--EES 624 + + K + + + + + ++ L K E+ +D + S +E Sbjct: 261 RRKAEEKRQARLEKELLEEEERKQREEVARLVEERRRLRDEKLEAEKDQSKSSPSTTQEK 320 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++R+ RR+ D G S + + S D + H Sbjct: 321 DSKKEAEKKRQERRKEK----DKGSSKSNSDAEELEKKSSKDSERKRDFDKKGETDRREH 376 Query: 685 GFTENYDVSIPPVST 699 + V + + Sbjct: 377 QKSGTECVKVQTSES 391 >gi|115712770|ref|XP_781572.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115975847|ref|XP_001183206.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 1673 Score = 39.2 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 3/137 (2%) Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 + E V + + P + E + + TG R+ + + + Sbjct: 593 AKESKSDDDTEPENEPVEEAKGDSPSVQQERKRNGKKGGKRRGKTGDRRRGKAKESKSDD 652 Query: 641 ATDHHDA---GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 T+ + D S+Q + + T+ ++ + PV Sbjct: 653 DTEPENEPVEEAKGDSPSVQQERKRNGKKGGKRRGKTDDRRRGKAKESSDDDTEPENEPV 712 Query: 698 STPEMESSNSSSDPIVK 714 + +S + K Sbjct: 713 EEAKGDSPGIQQERKRK 729 >gi|300175972|emb|CBK22189.2| unnamed protein product [Blastocystis hominis] Length = 600 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 3/163 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +++ + + K E V + + K + E + + Sbjct: 331 SVKRKKSESERRKKSARERKKKRESVRRKKSESVKKRKRESVKRKKSASERRKKSARERR 390 Query: 624 STGVIRKRRRR---RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 ++R+R RR++ + + V S S + E Sbjct: 391 KKSESVRKRKRESVRRKKSESVKKRKSASVKRKKSASERRKKSARERKRKNVRERKRKRE 450 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + +E+ V + + +K + + RK Sbjct: 451 SVRRKKSESVKRKRESVKKRKSANVKKRKSANERKRKNVRERK 493 >gi|331236738|ref|XP_003331027.1| Uhrf1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310017|gb|EFP86608.1| Uhrf1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 552 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 3/130 (2%) Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + + + D +D E S K+RR+ RR G Sbjct: 7 APTKESYEEIRQRNIAASNDDRDERTDENSKTRAEKKRRKSTRREAEQAAEGEGDEKPQE 66 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS---SSDP 711 + ++ +E+ +E + P+ S+ S + Sbjct: 67 EAGSRRRSGRIQKLQARKQNKLAGVEDERSEGSEESEDEYDDQDGPDGGDSSDGSESKEI 126 Query: 712 IVKKTRWWKR 721 K+ WK Sbjct: 127 SRKRKSTWKP 136 >gi|221488723|gb|EEE26937.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2685 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 24/262 (9%), Positives = 65/262 (24%), Gaps = 33/262 (12%) Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 +++ + VE DR + G E +RQ + E + + G+ Sbjct: 2274 EEHRQRVES----ERPSDRRQ---------GAREETRQ--GEAREERSDREQIEAVRRGW 2318 Query: 493 IRSQSSVALSILRSVEEYLLQY-TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 R ++ R E + + + + + E R + + Sbjct: 2319 RREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEE------DSEDELCARLERRQRTTDS 2372 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + P + + + +++ Sbjct: 2373 SKSDEMATHEEIR----RPGTRREAHEKAAFTGQNNARQNNAYPEAKIFSSDEEEHWTKA 2428 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYMEP 670 + V++ + RRR+P +N D++ + + Sbjct: 2429 PKATAAREVTDLGETNLP------RRRKPEARKEKTTRSKKTRKTRKNQEDETTETDNKD 2482 Query: 671 SDITNHNLLENGAHGFTENYDV 692 + + + + + D Sbjct: 2483 ENNKDEDSKDEDSEDEKPRSDE 2504 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 39/145 (26%), Gaps = 3/145 (2%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 V + + + +++ + V + + E+ + EE + + Sbjct: 2254 GDERKERSLHVHNQEEGRTREEHRQRVESERPSDRRQGA--REETRQGEAREERSDREQI 2311 Query: 631 RRRRRR-RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 RR RR A + ++ + E D + T + Sbjct: 2312 EAVRRGWRREEAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTD 2371 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714 S + E+ + + K Sbjct: 2372 SSKSDEMATHEEIRRPGTRREAHEK 2396 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 42/153 (27%), Gaps = 7/153 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKN-IECVWQDEALLPIPKSESLEDIQDNIVSEES 624 E P + ++ K E +DE + + + D + Sbjct: 2322 EAVKPREDTRGDREAAKDSCRSRKVQKTCEEEDSEDELCARLERRQRTTDSSKSDEMATH 2381 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R RR A + + N ++ + + A Sbjct: 2382 EEIRRPGTRRE------AHEKAAFTGQNNARQNNAYPEAKIFSSDEEEHWTKAPKATAAR 2435 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 T+ + ++P PE ++ +KTR Sbjct: 2436 EVTDLGETNLPRRRKPEARKEKTTRSKKTRKTR 2468 >gi|169863827|ref|XP_001838531.1| hypothetical protein CC1G_10773 [Coprinopsis cinerea okayama7#130] gi|116500437|gb|EAU83332.1| hypothetical protein CC1G_10773 [Coprinopsis cinerea okayama7#130] Length = 816 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 2/146 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV--SEESTG 626 + S A V + + ++ +++ + + ES Sbjct: 654 RQSSKKRASKKGSNSKESADGRASGESAVDEKVSSFKGVRTRKQKEMAERGLTLPPESAS 713 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 I ++R+RR A + D Q D +D G Sbjct: 714 QIGRKRKRRGTTSEAPEKRDRRPKRAKEIQQEPTDRGKRATSGGTDRPREVQKAQGEANT 773 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPI 712 +PP + + +S P Sbjct: 774 VGGKKTKVPPATPIKRSQRLASQTPQ 799 >gi|315048227|ref|XP_003173488.1| SAP domain-containing protein [Arthroderma gypseum CBS 118893] gi|311341455|gb|EFR00658.1| SAP domain-containing protein [Arthroderma gypseum CBS 118893] Length = 669 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 7/156 (4%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I V A + + + E + +S + D +E Sbjct: 167 DITPAQAVPAPAPAPEPIQEPVKESVQEPVQEPTQEPTQQPVQDESANKSSSADVEAIKE 226 Query: 624 STGVIRKRRRRRRRRRPATD-------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 T RKR+RR + P+ + + + + + + + T Sbjct: 227 DTDESRKRKRRSQTPPPSPRSIALKKARIEVEQQQSWPPQEEIKTEGHKLNEDEAPATAP 286 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 E A S PP P+ E+ + + Sbjct: 287 VTAEPPAQDTDVEMKESTPPAPEPKRETEENEAKEQ 322 >gi|257051458|ref|YP_003129291.1| chromosome segregation protein [Halorhabdus utahensis DSM 12940] gi|256690221|gb|ACV10558.1| SMC domain protein [Halorhabdus utahensis DSM 12940] Length = 890 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 59/188 (31%), Gaps = 2/188 (1%) Query: 530 YLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 +L KR ++ + E++ + + +L + + + ++ + Sbjct: 180 RVLEGKRESLSQLESQIEAKVEKELHEQLNAAESELATVREELERYDEQRETARETLDAA 239 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 E + E L I + E + + RR RR +D ++G+ Sbjct: 240 NSILEEYEQRREELDEIESEIAELTETIEATEREREELADEISDRRDRREEISDRIESGL 299 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + S + + D+ + + E H + + +++++ Sbjct: 300 DTAELSAEADREAVEDLVDDLDRRDDEIRDEIEQHRL--DLQRHRENAESEREDATDAEE 357 Query: 710 DPIVKKTR 717 K+ R Sbjct: 358 RAAEKRDR 365 >gi|208965570|dbj|BAG72799.1| splicing factor, arginine/serine-rich 2, interacting protein [synthetic construct] Length = 1463 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 40/184 (21%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 739 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 798 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 799 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 852 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S +E+ + +K+R Sbjct: 853 KDIARERRQSQSRSPKRYTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 910 Query: 720 KRRK 723 R + Sbjct: 911 SRER 914 >gi|42560747|ref|NP_975198.1| hypothetical protein MSC_0195 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492243|emb|CAE76840.1| Hypothetical protein MSC_0195 [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 384 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 5/163 (3%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + I + + TG + + ++ I+ DE P P ++ +E Sbjct: 143 YEIIITAKNENKHFTGSTNIFFIEDSTINEKIKPELPDEDKSPEPGYNEFSPNDSDLSTE 202 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 +S + RP + D + + + + + D S+ TN + N Sbjct: 203 DSNNRNNGENPQGDENRPGNNSGDNSSRNPNNRTPDS-NSNRDGSSSNSNGTNDSRPNNE 261 Query: 683 AHGFTENYDVSIPPVS----TPEMESSNSSSDPIVKKTRWWKR 721 + + S P + S ++ +WW++ Sbjct: 262 NETSSNPTNPSNEDQPGDYLNPYKPGNGSPNNGTNTDDKWWEK 304 >gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens] Length = 1531 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F + T K D + + + DE +P S S Sbjct: 1307 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1361 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + K ++ A D G V SS P N + + Sbjct: 1362 PKLSNKELKPQKSVVSDLEADDV--KGSVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723 A + + P+ + S P KT+ ++RK Sbjct: 1420 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1467 >gi|308499224|ref|XP_003111798.1| hypothetical protein CRE_03167 [Caenorhabditis remanei] gi|308239707|gb|EFO83659.1| hypothetical protein CRE_03167 [Caenorhabditis remanei] Length = 540 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 48/187 (25%), Gaps = 5/187 (2%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 L +K+ + + ++ V+ ++ V Q Sbjct: 306 LRKKKEEMDPIKKKYLKKPRVIEKP----MDEKATLTMFEESFRPNAKDVPGGEQHIVKP 361 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR-PATDHHDAGVV 650 A + + + +++ G +KR RR++ D Sbjct: 362 LIKLPWGSVGADIVATMKDDHIGDTEEDRKKDNDGEEKKRESERRKKDGEKNDDKKKDAR 421 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 S + + S N + + T+ ++N++SD Sbjct: 422 SKSKKEKKLDKSKESKDPRESKRRNTDRETHAHGNRTDAKPKETKDAEQKTNRNNNNNSD 481 Query: 711 PIVKKTR 717 K + Sbjct: 482 TPKKNKK 488 >gi|297380231|gb|ADI35118.1| ribosomal protein S1 [Helicobacter pylori v225d] Length = 552 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|261838388|gb|ACX98154.1| 30S ribosomal protein S1 [Helicobacter pylori 51] Length = 552 Score = 39.2 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINTDGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|327264621|ref|XP_003217111.1| PREDICTED: a-kinase anchor protein 8-like [Anolis carolinensis] Length = 708 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 62/214 (28%), Gaps = 15/214 (7%) Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 C C I +Q + LRSV+ + A T V +LN K IV+ Sbjct: 500 CIACDM--LIPAQPHLLQRHLRSVDHNRNRRMAAEHFKKTSFHVAKSVLNSK--HIVKML 555 Query: 544 ARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 ++ + + +++ V+ G + + E + + Sbjct: 556 EKYLKGDDPFTDENIDQD---VDESEAVERADREGTQENTAI--------EEKQNAGDEV 604 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 P E+ + D + + +++ T SS + + Sbjct: 605 KPSEAGETAKPEGDETAFPPADFSKGESAENQQQAEERTVAVGIVEELPFSSQGGSEERA 664 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 ++ E TE+ D+ PV Sbjct: 665 AEIQRERQQHMEPAEENLSEMRTTESKDIKEEPV 698 >gi|225849605|ref|YP_002729839.1| ribosomal protein S01 [Persephonella marina EX-H1] gi|225646411|gb|ACO04597.1| ribosomal protein S01 [Persephonella marina EX-H1] Length = 550 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%) Query: 21 RDNRVEELDFESEHKKQIKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQ 80 RDN EE K G++ AKV ++ + AFVD + GF+P EI + + Sbjct: 427 RDNPWEEFF-----SKHSVGDVIKAKVKKLID--RGAFVDINEDVEGFIPLSEISKEKIE 479 Query: 81 IPFSDRQALLKESNI 95 IP SD+ +L +E Sbjct: 480 IP-SDKLSLGQEIEA 493 >gi|158294073|ref|XP_315382.4| AGAP005374-PA [Anopheles gambiae str. PEST] gi|157015395|gb|EAA11000.4| AGAP005374-PA [Anopheles gambiae str. PEST] Length = 1410 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 70/272 (25%), Gaps = 28/272 (10%) Query: 469 RQRIRSSVLESTT---------------KVCTYCKGAGYIRSQSSVALSILRSVEEYLLQ 513 R+R + E T V + + S+S S Sbjct: 759 RKRHSVEMSEFLTPEHPGVYLPKVECIRSVSDRIATSSSLASKSKPTYHFNDSSSSSSED 818 Query: 514 YTAHNIIVHTHSDVVLYLLNQK---RATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 + N+ T+ VVL +K + + E R + + + E G Sbjct: 819 ESVRNVFKKTNVSVVLEKELEKVRVDGVLKKQEKRTARQLQIRSDDD------QSETGES 872 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K P K+ ++A + +S +E+ + Sbjct: 873 KAGGDRSDKKPALRDAEPLERKSSRRREMEKAKSSEVEKKSSRTAGKREEEKEAKAKGKD 932 Query: 631 ----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R RR + + ++ D Y + ++ + Sbjct: 933 AESAERTSSSRRSEMDQDKGVEGETKYKRTTDRKEEKQDRYKKSEKLSTILENDRRERRP 992 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + ++ P S E SD K R Sbjct: 993 EKEKELKEKPSSRRREEEKEKDSDIAKKAKRT 1024 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 1/152 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK + + + S S+ D++ + + + E +D + + ST Sbjct: 923 EKEAKAKGKDAESAERTSSSRRSEMDQDKGVEGETKYKRTTDRKEEKQD-RYKKSEKLST 981 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + RR RR + + + ++ +D H + Sbjct: 982 ILENDRRERRPEKEKELKEKPSSRRREEEKEKDSDIAKKAKRTTTTDKKEHKDDNKKSRQ 1041 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + S S + S+ + K+ R Sbjct: 1042 SEKLGERSDTRASAERAKPSDDDRVRVSKRIR 1073 >gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens] Length = 1531 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F + T K D + + + DE +P S S Sbjct: 1307 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1361 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + K ++ A D G V SS P N + + Sbjct: 1362 PKLSNKELKPQKSVVSDLEADDV--KGSVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723 A + + P+ + S P KT+ ++RK Sbjct: 1420 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1467 >gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens] gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA topoisomerase II, alpha isozyme gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens] gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens] gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens] gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct] Length = 1531 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 13/168 (7%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F + T K D + + + DE +P S S Sbjct: 1307 NFDVPPRETEPRRAATKTKFTMDLDSDEDFSDFDEKTDDEDFVPSDASP-----PKTKTS 1361 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + K ++ A D G V SS P N + + Sbjct: 1362 PKLSNKELKPQKSVVSDLEADDV--KGSVPLSSSPPATHFPDETEITNPVPKKNVTVKKT 1419 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNS------SSDPIVKKTRWWKRRK 723 A + + P+ + S P KT+ ++RK Sbjct: 1420 AAKSQSSTSTTGAKKRAAPKGTKRDPALNSGVSQKPDPAKTKNRRKRK 1467 >gi|313225240|emb|CBY06714.1| unnamed protein product [Oikopleura dioica] Length = 944 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 9/175 (5%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E E + G S+ + +++ +E+ Q + + Sbjct: 215 EETEDKSGASVKITPDETASEEDETMEQSDQRQTRASETGPSAESEEEQESAPAHAKEDA 274 Query: 600 DEALLPIPKS---------ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 D A P S + E Q+ E+ + R PA + Sbjct: 275 DPATDATPASTQVTELDQEDKSEPKQEQFPEEDQEAKQVTESEQEERSEPAPEQEIKSEQ 334 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 + ++ + ++ +EP+ T +N ++ + + PE E++ Sbjct: 335 EIDLASKSEPEIDTEISVEPATETAPEPEKNVEPVLNKSAESETKILMEPETEAA 389 >gi|308458792|ref|XP_003091728.1| hypothetical protein CRE_14343 [Caenorhabditis remanei] gi|308255319|gb|EFO99271.1| hypothetical protein CRE_14343 [Caenorhabditis remanei] Length = 591 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 13/167 (7%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P + S+ + + + + + + + + G Sbjct: 156 EPGERETEEPECQDSEIRILTVEPQNSDTDLVKKVTTPVTVTTDDKSDEKRKKATKEGSK 215 Query: 629 RKRRRR----RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT---------N 675 R RR+R + R + + + + + + S + P T Sbjct: 216 RARRKRVIKQKGSGRNSGRKQQLQLSDERRRRKKLNNGSKESLASPRASTYVPLKLDKSA 275 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N++ G ++ + P V S I KT+ W R+ Sbjct: 276 ENVVRKGRASNKQSDSMGPPSVDKRNPAKKKSFFKNIFDKTKSWMRK 322 >gi|308063837|gb|ADO05724.1| 30S ribosomal protein S1 [Helicobacter pylori Sat464] Length = 552 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|261201764|ref|XP_002628096.1| rRNA maturation protein [Ajellomyces dermatitidis SLH14081] gi|239590193|gb|EEQ72774.1| rRNA maturation protein [Ajellomyces dermatitidis SLH14081] Length = 904 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 9/186 (4%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIE 566 + + V L Q+R + E + R V I + + + E Sbjct: 73 SRSDQDAPRSRPGVTKSLGEQRRKETLLKEMQRRSKVGILLDRRFGENDPTMTPEERAAE 132 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + +D+ + ES Sbjct: 133 RFARESQKKLKKESMFNLEDDEEEMQLTHLGQTITFDKENKDDFEEDDLNASDEDGESEK 192 Query: 627 VIRKRRRRRRRRRP--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++RR A D + G S V+ + ++ Sbjct: 193 ARKRRRNAEEDDMEGLAGDSEEEGQPERKKSKNEVMKELIAKSKFHKYERQKAKEDDDDL 252 Query: 685 GFTENY 690 + + Sbjct: 253 RASLDK 258 >gi|308489229|ref|XP_003106808.1| hypothetical protein CRE_16642 [Caenorhabditis remanei] gi|308253462|gb|EFO97414.1| hypothetical protein CRE_16642 [Caenorhabditis remanei] Length = 961 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 67/237 (28%), Gaps = 6/237 (2%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 + + + T C G + + + +++ + +T + Sbjct: 633 HMEIEIDDLLTTECKVNSKRGSQPNATKNSSHKQKAIAQKSHTKQQKVASTYTGN--ANT 690 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 + QK +V F VS + EK + +A + ++ + + Sbjct: 691 IHAQKGNVLVSP-DSFSVSAKQNTSAMKTREEIAAEKKAKQEAEKRLAQQRKAEKERQAK 749 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + ++E ++E+ E + ++ + ++ + + + A Sbjct: 750 LLKEKKKSEEEKRRLEKEAEN-EKRKAEKAAKLAEERAQREKEAQEYKEKAKQMEKEMAE 808 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA--HGFTENYDVSIPPVSTPEMESS 705 Q I+ + E A D IPP+ P E Sbjct: 809 EKERKRQQRIEAKELKNARKAAQKAKEEEETKAWMEASKTFNDKYIPPLPKPRKEEE 865 >gi|239611906|gb|EEQ88893.1| rRNA maturation protein [Ajellomyces dermatitidis ER-3] Length = 904 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 9/186 (4%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIE 566 + + V L Q+R + E + R V I + + + E Sbjct: 73 SRSDQDAPRSRPGVTKSLGEQRRKETLLKEMQRRSKVGILLDRRFGENDPTMTPEERAAE 132 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + +D+ + ES Sbjct: 133 RFARESQKKLKKESMFNLEDDEEEMQLTHLGQTITFDKENKDDFEEDDLNASDEDGESEK 192 Query: 627 VIRKRRRRRRRRRP--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++RR A D + G S V+ + ++ Sbjct: 193 ARKRRRNAEEDDMEGLAGDSEEEGQPERKKSKNEVMKELIAKSKFHKYERQKAKEDDDDL 252 Query: 685 GFTENY 690 + + Sbjct: 253 RASLDK 258 >gi|311274876|ref|XP_003134493.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like [Sus scrofa] Length = 1580 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 25/127 (19%), Gaps = 3/127 (2%) Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 S K + E S+ E ++ + RR + Sbjct: 83 EDSGGGGTGVKKKRKKKDPGEQEGAAKGSKDREPKPKRKREPREP-KEPRKAKEPRRPKE 141 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + + E T+ + E + Sbjct: 142 PKEPKQKDGIKKARKP--REASGPKEAKEKRSSTDSAVRTKSRKASKEQGPTPVEKKKKG 199 Query: 701 EMESSNS 707 + +S + Sbjct: 200 KRKSETT 206 >gi|308183158|ref|YP_003927285.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4] gi|308065343|gb|ADO07235.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4] Length = 552 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|217034328|ref|ZP_03439744.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10] gi|216943213|gb|EEC22680.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10] Length = 552 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|195135387|ref|XP_002012114.1| GI16794 [Drosophila mojavensis] gi|193918378|gb|EDW17245.1| GI16794 [Drosophila mojavensis] Length = 1128 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 11/156 (7%), Positives = 32/156 (20%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 K + + + + + + S++ G Sbjct: 365 VRGRSTERRKDKKSRRNDSSTDSRREKRDKSTRTPPRRETEKPTRSKERQRERSKQRLGS 424 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++R + RR + + ++ + + Sbjct: 425 RERQRSKDARRNERHRSKERQRSKERLKSKDRARSMERHKSKERQQSKERQRPKERQRSK 484 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E S + S +++ R K Sbjct: 485 ERQRSKERQRSKERLRSKERVRSKERLRSKERARSK 520 Score = 37.6 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 34/137 (24%), Gaps = 2/137 (1%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 + S S N ++ +E ++ R++ ++ RR Sbjct: 325 QRARASSTDSARSNSPERKDKKSSKSRAAAE--DNDTPAENPVRGRSTERRKDKKSRRND 382 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 +TD + + E + L + +++ + S Sbjct: 383 SSTDSRREKRDKSTRTPPRRETEKPTRSKERQRERSKQRLGSRERQRSKDARRNERHRSK 442 Query: 700 PEMESSNSSSDPIVKKT 716 S ++ Sbjct: 443 ERQRSKERLKSKDRARS 459 >gi|188527836|ref|YP_001910523.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470] gi|188144076|gb|ACD48493.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470] Length = 552 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDRKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|83288394|sp|Q9JM99|PRG4_MOUSE RecName: Full=Proteoglycan 4; AltName: Full=Lubricin; AltName: Full=Megakaryocyte-stimulating factor; AltName: Full=Superficial zone proteoglycan; Contains: RecName: Full=Proteoglycan 4 C-terminal part; Flags: Precursor Length = 1054 Score = 39.2 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 4/120 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL----EDIQDNIVSEES 624 P P+ K E E PK E E Sbjct: 540 EPEPTTPKKPEPTTPKEPVPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEP 599 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 T ++ P T + + V + ++ +P + T + + + Sbjct: 600 TTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSK 659 >gi|326427171|gb|EGD72741.1| hypothetical protein PTSG_04470 [Salpingoeca sp. ATCC 50818] Length = 859 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 10/115 (8%) Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME--------- 669 + K+ +R R R+ + + + + + + Sbjct: 679 KREQRERKRQEKKEQRERERQEKKEQRERERQEKKEQREQRQRELQEKREQQLRKRCARA 738 Query: 670 -PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + H E + I V+ ++ + D W+ R + Sbjct: 739 RAKRERQEARERSKRHKQEERENRRIELVALRRIQRRVRTQDGDTGTVVWFTRAR 793 >gi|89897629|ref|YP_521116.1| hypothetical protein DSY4883 [Desulfitobacterium hafniense Y51] gi|89337077|dbj|BAE86672.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 445 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 18/197 (9%), Positives = 54/197 (27%), Gaps = 13/197 (6%) Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIE----KGSPVQALVNTGHKVGSDSQAPSY 590 + + E R + I ++ IE K + +A S Sbjct: 229 EPKDLKAKEERTRLLETPEIQEQMRKDKLIIEAMSNKTNQGEAKDKKEGYGKSKWYNLDR 288 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIV---------SEESTGVIRKRRRRRRRRRPA 641 +KN + +++ I + +D + + + + + + R Sbjct: 289 EKNNQKNTKEQPRNGISNPKPSQDSNKSSTKDNDKDSNKNNNKNSNKDRSKEKGKDRDYG 348 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + G + + S + + N++ + + + + Sbjct: 349 SGTKGKGTDKGDDLEKGQDNRSDRTDNQGNSDRNNDQNTDKEKQSPKQAEPAEKAGKRDN 408 Query: 702 MESSNSSSDPIVKKTRW 718 ++ +S+ +R Sbjct: 409 QDTKQNSNRKTEGDSRN 425 >gi|39104543|dbj|BAC98214.2| mKIAA1604 protein [Mus musculus] Length = 907 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 4/154 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + D++ D+ S + E Sbjct: 754 DQRHQEGRTERARSERHRAQNSRDADRDPLAKHMDDRSHENSHSRVGNGREQGSHREPED 813 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD---ITNHNLLENG 682 +++RR RR +++ + S D S + +NG Sbjct: 814 RHGEPKKKRRERRDSFSENEKQRSRNQDSDNVRRKDRSKSRERSRRHSGHKGDDARCQNG 873 Query: 683 AHGFTENYDVSIPPVST-PEMESSNSSSDPIVKK 715 A E + P +K Sbjct: 874 AERRWEKPSRRPEQSRESKRSQDRRREKSPTTQK 907 >gi|322706069|gb|EFY97651.1| DNA mismatch repair protein msh6 [Metarhizium anisopliae ARSEF 23] Length = 1222 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 5/150 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + S SQ +DE S+ ED + ++ + + + Sbjct: 154 AESSDEEQPFNYSSKSQTRRGRARRTVKDEDEFDEDDVASQEEEDDMGDFIASDDSDDLP 213 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQ-NVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + ++R+R + AT + V Q + I D D M T+ N TE Sbjct: 214 RTKKRKRPAKAATARKRSNVSPPADIRQGSPIHDVDDELMTEVPTTSTTSQWNYDPESTE 273 Query: 689 NYDVSIP----PVSTPEMESSNSSSDPIVK 714 V P P+ + + +P + Sbjct: 274 KRPVVTPAERAAAKDPKRKEKAHTKEPEDR 303 >gi|261839788|gb|ACX99553.1| 30S ribosomal protein S1 [Helicobacter pylori 52] Length = 552 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|301614223|ref|XP_002936596.1| PREDICTED: hypothetical protein LOC100485119 [Xenopus (Silurana) tropicalis] Length = 1043 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 2/159 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK Q + + S Q S K+ D + ++E E + Sbjct: 617 EKRKRQQVKLRGRKRRRSQIQRNSASKSRSRYKHD-PVDESSETEGQETTSERHKEGIKL 675 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + R + RR + SI + S + Sbjct: 676 TIRTIRVASKNRRHEVPEAQPEISEEAEESIGRTLRRSPRISRPSVKPAAEVKDRKAEKK 735 Query: 686 FTENYDVSIPPVSTPEME-SSNSSSDPIVKKTRWWKRRK 723 ++ D + + E ++ S +KK + +RR+ Sbjct: 736 QSDEEDKPASQRTEKDDERKTDKDSSQKIKKNKPRQRRR 774 >gi|255544660|ref|XP_002513391.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223547299|gb|EEF48794.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] Length = 587 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 8/170 (4%) Query: 554 IGIELADKLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 +L + + + N+ +++ D P + + + + SL Sbjct: 371 PTKQLQPPKYVLKDDNMQHGGKNNSRYEMVFDGDTPESPRQEKRNGRHDPEREKMHRRSL 430 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 ED++ ++ G ++R R R R HH+ + D + + D Sbjct: 431 EDLKHGAEEKKYQGDGHRQRDRNRGHREDDRHHEK---KPSRYPEERTDRRKERDDDRRD 487 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ G + + + S ++ +KRR Sbjct: 488 DRDYWNRSADVEGRGD----GRENEGYRKRTADYDSRRGELRDGSNYKRR 533 >gi|118475172|ref|YP_892406.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40] gi|118414398|gb|ABK82818.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40] Length = 557 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 39 KGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLPFLEIHPDYYQIPFSDRQALLKESNIAQT 98 G+ V+ +EP AFVD G + GFL EI D + + + + + + Sbjct: 288 VGDTIKVIVSNIEPY--GAFVDLGNDIEGFLHISEISWD--KNIKNPKDFIKENEELDVE 343 Query: 99 DSEAVADD 106 E ++ Sbjct: 344 VIEIDVNE 351 >gi|54025606|ref|YP_119848.1| shikimate kinase [Nocardia farcinica IFM 10152] gi|54017114|dbj|BAD58484.1| putative shikimate kinase [Nocardia farcinica IFM 10152] Length = 493 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 28/145 (19%), Gaps = 8/145 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + S D P ++ D + Sbjct: 319 RHHASTPGRAPVRRRPRRRRGRSTDPTSTDRRDRATTSGAPPADETTDTTASTPG--RPD 376 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R RR + N D P + Sbjct: 377 RSPDRPRARRSGDRTRHAAPRSTRAPADRPAN------DAATGPGPDGPDAPIPQHDGAD 430 Query: 687 TENYDVSIPPVSTPEMESSNSSSDP 711 P S E S+ +SS P Sbjct: 431 PRELSAPRSPSSADEKPSTATSSAP 455 >gi|7209719|dbj|BAA92310.1| unnamed protein product [Mus musculus] Length = 1054 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 4/120 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL----EDIQDNIVSEES 624 P P+ K E E PK E E Sbjct: 540 EPEPTTPKKPEPTTPKEPVPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEP 599 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 T ++ P T + + V + ++ +P + T + + + Sbjct: 600 TTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSK 659 >gi|324499522|gb|ADY39796.1| Msx2-interacting protein [Ascaris suum] Length = 1768 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 85/313 (27%), Gaps = 42/313 (13%) Query: 428 IDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYC 487 +DM +K + VEK L E EM+++ + ES+ K Sbjct: 205 VDMPPEKKKQKVEKSLVEISMFP---------------EMNKKEPKQKKKESSRKTSEVK 249 Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--- 544 K ++Q S + + + L + ++ + E Sbjct: 250 KAKEAEKAQVSKTEQFEKKLAKRLRKEQKEREEEQKREADESKKKKEENRIERDIEKSSG 309 Query: 545 RFGVSINVVI----------------GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 + G +V + + E + A Sbjct: 310 QTGKEKEIVKTEKENREEEEDNIQKMEVTAETQHDEKESMKTETQSEEMPQNEVVEEAAV 369 Query: 589 SYD-----KNIECVWQDEALLPIPKSESLEDIQD--NIVSEESTGVIRKRRRRRRRRRPA 641 + ++I+ +E + + ++ E+I D E R+R+R+ Sbjct: 370 KEEYECSCESIDEKQLEEGIKQDDEHKTNENIVDLGEKPPLEDEVNGRERKRKADENEGV 429 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D + + + DS E T + + +S P Sbjct: 430 FDVKRVKEETKEEMPRKQLSDSDSSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEP 489 Query: 701 EMESSNSSSDPIV 713 +SS +++ Sbjct: 490 RSDSSTTAAVKSE 502 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 60/229 (26%), Gaps = 17/229 (7%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 ++ EE V + +++K + E Sbjct: 343 HDEKESMKTETQSEEMPQNEVVEEAAVKEEYECSCESIDEK-----QLEEGIK-----QD 392 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 ++ P G + + +++ V ++ K S D Sbjct: 393 DEHKTNENIVDLGEKPPLEDEVNGRERKRKADENEGVFDVKRVKEETKEEMPRKQLSDSD 452 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 +++T + +RR R+R + + S S +T Sbjct: 453 SSAGETKQKNTRRQKTTKRRAARKRVKNEEMETISEPRSDSSTTAAVKSELSEESERLLT 512 Query: 675 NHNLL-------ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + E + ++ D S + + + + S + +T Sbjct: 513 PSDTVVKPCVVDEPASEKYSLLEDASKWGAESAKSVTDDDESASVSART 561 >gi|156051518|ref|XP_001591720.1| hypothetical protein SS1G_07166 [Sclerotinia sclerotiorum 1980] gi|154704944|gb|EDO04683.1| hypothetical protein SS1G_07166 [Sclerotinia sclerotiorum 1980 UF-70] Length = 830 Score = 39.2 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 38/154 (24%), Gaps = 10/154 (6%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ + + ++ I + + E E EE+ + Sbjct: 262 EALERANRERKQREAREAKERMEREIREAKERRDREELEAREKREKAAREKEREENERIA 321 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R R + R + + +D + L + E Sbjct: 322 RLEREDQVARERKAKEEREIRERIQAEAEAKARADYDRRLREEIARREVLRKEEEAIRRE 381 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + ++ E + KK R K R Sbjct: 382 QEMLRLEAIARVEAD----------KKARAEKER 405 >gi|154272161|ref|XP_001536933.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150408920|gb|EDN04376.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 904 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 32/310 (10%), Positives = 81/310 (26%), Gaps = 29/310 (9%) Query: 429 DMEEKKNNRSVEKKLKESLKKDRARVQVGAISN-FGLLEMSRQRIRSSVLESTTKVCTYC 487 DM +K+ ++ +++ A + S ++E + + S +L T T Sbjct: 144 DMASEKHQQNGVLIGEDTSSTPPATTDLEPRSPALDIVEPTDKDSHSPLLPGTQASNTVD 203 Query: 488 KGAGYIRSQSSVALSILRSVEEY---LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544 G + R + + ++ +K E Sbjct: 204 --VGALPGTRLTPQQGTRDNTSSPNIARERNGGDGPKARPQEMPHQQAEEKATDKNHVEK 261 Query: 545 RFG----VSINVVIGIELADKLFYIEKGSPVQALVNTG----HKVGSDSQAPSYDKNIEC 596 F ++ + E + + + + + ++ + Sbjct: 262 SFSDTDEGPTHLKKDNGAHTENDAAEVSEGTKTQEPEEVKINYPASDEQKDGADERPVRQ 321 Query: 597 VWQDEALLPIPKSESLED-------IQDNIVSEESTGVIRKRRRRRRRRR------PATD 643 ++ ++ +P+ S ED S + R R RR+R + Sbjct: 322 KLKETSIAGVPRPNSPEDHAMASQGTPVAGAESVSDTSSVEGRGRLRRKRSLGDMNEHEE 381 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 H + + + S D + + + TE+ + + Sbjct: 382 HDEVAGGKNTDETGHRRKRSRDSKTDDESSDKQERSK--SKSTTEDSHGMTDNMDAKDAT 439 Query: 704 SSNSSSDPIV 713 + P Sbjct: 440 NKGGIRTPTE 449 >gi|302508291|ref|XP_003016106.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371] gi|291179675|gb|EFE35461.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371] Length = 995 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 41/172 (23%), Gaps = 12/172 (6%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603 E+ ++ + S+ + P + VW++ Sbjct: 544 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEEPRSEEEGPKQRFPSKDVWEEAPE 603 Query: 604 LP--IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI- 660 E+ D + + E+ + R R+ R +T+ + + Sbjct: 604 SQQLTAAVEAPADSEKSEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPTKTQATSPTEL 663 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + P E +I + + + S P Sbjct: 664 KKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDTAPPATKSKPA 715 >gi|224066201|ref|XP_002194952.1| PREDICTED: SET domain containing 5 [Taeniopygia guttata] Length = 1392 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 11/174 (6%) Query: 557 ELADKLFYI---EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 EL + I E S V G SD++ P ++ E ++ A S Sbjct: 413 ELEMEQQNIASDENSSQQTEEVPEGPAAVSDNEVPEKEEKQEGEKEEPADEQGALVHSRR 472 Query: 614 DIQDNIVSE---ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 +D V + +++RRR + + + V S+ ++ + ++ + Sbjct: 473 SREDRKVEAIMHMFENLEKRKRRREQPSDRNSTDAEINVNSEAPELEEIKTETPETEDGS 532 Query: 671 SDIT-----NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 S ++ N ++ D T + S P + +R+ Sbjct: 533 SALSAAPPPPTNSTGVNTRRSSQVADAVPEKTVTKPAPAKPSRPRPKSRFSRYR 586 >gi|196968477|gb|ACG80812.1| hypothetical protein [Chlamydophila pecorum] Length = 276 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 9/148 (6%), Positives = 32/148 (21%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ ++ +P E ++ + + ES Sbjct: 87 KEPSPKESSPKELSPKESSPKEPSPKELSPKESSPKELSPKESSPKESSPKEPSPKEPSP 146 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ + + + + S ++ + + + + Sbjct: 147 KEPSPKESSPKELSPKESSPKESSPKESSPKESSPKELSPKELSPKELSPKKPSPKESSP 206 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKT 716 P S P K++ Sbjct: 207 KELSPKKPSPKESSPKELSPKKPSPKES 234 >gi|212536086|ref|XP_002148199.1| RNA polymerase II transcription elongation factor (Ctr9), putative [Penicillium marneffei ATCC 18224] gi|210070598|gb|EEA24688.1| RNA polymerase II transcription elongation factor (Ctr9), putative [Penicillium marneffei ATCC 18224] Length = 1190 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 14/180 (7%) Query: 533 NQKRATI-VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY- 590 N R TI + E L + + + ++ K Q Sbjct: 937 NMGRNTISKQLERSIQNQKEYEEKNALKLQQARAAREAELKRREEEVQKAQELEQERKRQ 996 Query: 591 -DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR-------RRRRRRPAT 642 + + + ++ L ++E + ++ ++ R++R+ RRR+R Sbjct: 997 VAEQRQRIIEETQRLAAKRAEEQRAREAAELTTDTETGERQKRKKKAPSGGRRRKRH--- 1053 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 D GVVSD S+ D P + + S E+ Sbjct: 1054 -DEDDGVVSDGRSVSVARSDDEGTTPAPKRRRRLERRGGAKEKPGKYKSSELVVDSDEEL 1112 >gi|115738175|ref|XP_789946.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115941689|ref|XP_001189413.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 889 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 50/176 (28%), Gaps = 18/176 (10%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 F E + + + PS + P S + ++ + Sbjct: 440 PDFK-EHFAEKVEITMDMRDYDPSERRPSAVPEKDIEADKTTTPPKKTSSTRNNLSVSNT 498 Query: 621 SE---------------ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 +T +RR R+R + + ++ + V N ++ D Sbjct: 499 RLTITPMQSSENLQTIYRATSPSTRRRFRKRSEKSRSQSQESSKRTTVDIEMNRLNADDD 558 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + + + P S + ++S+P + +T+ R Sbjct: 559 EEEDEGEDAPMIPKHTSSPRAPQKRESI--PHSPLKETQYMAASEPQLAETKQRGR 612 >gi|74695083|sp|Q75CK5|NST1_ASHGO RecName: Full=Stress response protein NST1 Length = 1207 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 35/124 (28%) Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 K E Q E + + ++Q + ++++ R+R Sbjct: 614 KEEEKRKQVEEEARLKQEAEAREMQRRENQRKKVEEAKRKKDLEMRKRLEEQRRREEEQE 673 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 ++ I D + + + ++ +V + +S D Sbjct: 674 RQRRMKEEIKRKRDQERKQREEEQRKRKQEKELKKLQSLEVKKKREEDDKPTEESSQEDN 733 Query: 712 IVKK 715 + K+ Sbjct: 734 LHKE 737 >gi|327352839|gb|EGE81696.1| rRNA maturation protein [Ajellomyces dermatitidis ATCC 18188] Length = 904 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 9/186 (4%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRAT--IVEYEARFGVSINV-----VIGIELADKLFYIE 566 + + V L Q+R + E + R V I + + + E Sbjct: 73 SRSDQDAPRSRPGVTKSLGEQRRKETLLKEMQRRSKVGILLDRRFGENDPTMTPEERAAE 132 Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + +D+ + ES Sbjct: 133 RFARESQKKLKKESMFNLEDDEEEMQLTHLGQTITFDKENKDDFEEDDLNASDEDGESEK 192 Query: 627 VIRKRRRRRRRRRP--ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++RR A D + G S V+ + ++ Sbjct: 193 ARKRRRNAEEDDMEGLAGDSEEEGQPERKKSKNEVMKELIAKSKFHKYERQKAKEDDDDL 252 Query: 685 GFTENY 690 + + Sbjct: 253 RASLDK 258 >gi|325115343|emb|CBZ50898.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 2106 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 16/158 (10%), Positives = 37/158 (23%), Gaps = 7/158 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + D + D++ L + ++ +S G Sbjct: 76 RKKSAGKYRKATGASSLDEREDRDDRSKTKAPHLSRSLTHARRSLPSGGEEEEEKRDSEG 135 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH-------NLL 679 +++ R+R R + D + + + E D + Sbjct: 136 ERARKKLPRKRSRVDVEREAREDARDEQVLFSRRRERERHKDERDDRGKEARLLRRVDEG 195 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 D S + + D ++TR Sbjct: 196 NRRTKKGAFRTDASPSSSLAGSSQEDDRKQDRTGRRTR 233 >gi|194223659|ref|XP_001918224.1| PREDICTED: similar to Regulating synaptic membrane exocytosis protein 1 (Rab3-interacting molecule 1) (RIM 1) [Equus caballus] Length = 1568 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 40/159 (25%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E P S S+ P K + + E Sbjct: 245 VEPAQPAAGPEQKQAASRSRSEPPRERKKTPALSEQNGRAAPKSERRRAPRASAPPGEGP 304 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ RR RR D + +D+ E E GA Sbjct: 305 AEERERKERRESRRLEKGRSQDYPDGPETRERGRAAEDAKPSKEEEYQTRYRTRPEPGAK 364 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + +S+ + ES S + R K+R+ Sbjct: 365 REKVETTLGDDSLSSDQSESVRPSPPKPHRSRRGGKKRQ 403 >gi|123469906|ref|XP_001318162.1| viral A-type inclusion protein [Trichomonas vaginalis G3] gi|121900914|gb|EAY05939.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3] Length = 5296 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 17/230 (7%), Positives = 64/230 (27%), Gaps = 8/230 (3%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV- 552 ++ ++ R +EE + ++ + L N+K T + E Sbjct: 3556 KNLANEKSEAERKLEEVQNEKAETERKLNEAEEANKNLENEKNETQKKLEEAEQQKAETQ 3615 Query: 553 -------VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 LA++ E+ ++ + E L Sbjct: 3616 KLLEQTEEAKKNLANEKSEAERKLQETEEAKKNLANEKSEAERKLEEVQNEKAETERKLN 3675 Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + + + +++ +++ ++ T+ + ++ S + + ++ + Sbjct: 3676 EAEEANKNLENEKNETQKKLEEAEQQKAETQKLLEQTEEAKKNLANEKSEAERKLQETEE 3735 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 ++ + + + + ++ + + KK Sbjct: 3736 AKKNLANEKSEAERKLEEVQNEKAETERKLNEAEEANKNLENEKNETQKK 3785 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 59/641 (9%), Positives = 167/641 (26%), Gaps = 30/641 (4%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 S++++L ++ + A + + D ++ + + + + + Sbjct: 3350 SEKESLQQKLDSANDEKNKLEQDKHKLEIDNTKLNDAKSHLENEKSQLAQQINDLNNKLQ 3409 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 + ++ ++ K Q ++ + Q LL Q+ + ++ + Sbjct: 3410 KLEEEKNKLEEEKAQNEKKLENSQQDGDKLGQQNQDLLKQLEEIKQKLQQTEQEKSALEQ 3469 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 + + + + D K + + + + + ++++ Sbjct: 3470 QKNEIQNKLNEIEQQMKDSEKEKEDIKQKLQQVEQEKSETQKKLEEAEQQKNEIQNKLEQ 3529 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 + L + E + K + +E + K + Sbjct: 3530 TEQEKKNLENEKAETEKRLQETEEAKKNLANEKSEAERKLEEVQNEKAETERKLNEAEEA 3589 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 L + E + Q + + S + +TE Sbjct: 3590 NKNLENEKNETQKKLEEAEQQKAETQKLLEQTEEAKKNLANEKSEAERKLQETE------ 3643 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 + A + E E A R + A ++ E+ + + +E+ Sbjct: 3644 ---EAKKNLANEKSEAERKLEEVQNEKAETERKLNEAEE-ANKNLENEKNETQKKLEEAE 3699 Query: 444 KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSI 503 ++ +A Q LLE + + ++ E + + ++ ++ Sbjct: 3700 QQ-----KAETQK-------LLEQTEEAKKNLANEKSEAERKLQETEEAKKNLANEKSEA 3747 Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINV--------VIG 555 R +EE + ++ + L N+K T + E Sbjct: 3748 ERKLEEVQNEKAETERKLNEAEEANKNLENEKNETQKKLEEAEQQKAETQKLLEQTEEAK 3807 Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 L ++ EK + D+ + E + E Sbjct: 3808 KNLENEKSETEKKLQETEEAKKNLEQEKSDIQKKLDETKQQKVNLENEKAETQKLLEETE 3867 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + E KR + + + + + +QN ++ E + Sbjct: 3868 EAKKNLENEKAETEKRLQETEEAKKNLANEKSEAERKLEEVQNEKAETERKLNEAEEANK 3927 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + E + +E + + + + Sbjct: 3928 NLENEKNETQKKLEEAEQQKAETQKLLEQTEEAKKNLENEK 3968 >gi|58260672|ref|XP_567746.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57229827|gb|AAW46229.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1049 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 38/152 (25%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +EK KVG + + + ++ + E D V+ Sbjct: 472 KVEKKEVEGERKKDDKKVGEKKHDEKVAEGDKKNDKSQSGRKKHDEKVGEKKHDEKVAGG 531 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R++ + D + + +N + E + + G Sbjct: 532 DKKDDESQSGRKKPSSGDKEGGDKRLDHKKTDKKNNEEKDDKKAGEKKSGSKEGDKKPGD 591 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + + + P KK Sbjct: 592 KKGDKKAENRNEEAGKKPANEKEAVNKPGEKK 623 Score = 38.0 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 41/157 (26%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K S + VG++ + + + A + + E Sbjct: 400 DKKSATGEKRDEKRAVGAEKKDDKKVAAADKDDKKAAGGNRKDDKEATGAEKKAAGAEKK 459 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + + R+ + D + D+ + +D + ++ Sbjct: 460 DDKKAGDTKAERKVEKKEVEGERKKDDKKVGEKKHDEKVAEGDKKNDKSQSGRKKHDEKV 519 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + +D + + ES + P +R Sbjct: 520 GEKKHDEKVAGGDKKDDESQSGRKKPSSGDKEGGDKR 556 >gi|281339825|gb|EFB15409.1| hypothetical protein PANDA_007678 [Ailuropoda melanoleuca] Length = 2992 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 45/148 (30%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + P + + S S+A ++ + +E+L D +E Sbjct: 2645 RREPFLVNESLDNVKNSGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEE 2704 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R+ +R+R+R + + DV + EP D N + Sbjct: 2705 EERQMPKRKRKRHYPSSEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSK 2764 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVK 714 T + S + E + +S K Sbjct: 2765 TSSKTNSTASRAMDEKDEYSSGEAAGEK 2792 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 54/221 (24%), Gaps = 13/221 (5%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +G ++ S + + + H+ + ++R R S Sbjct: 2661 SGSRANEEIHIKSPNKEERSNGRKDNTEALRDHSVEANPKEVEEEERQMPKRKRKRHYPS 2720 Query: 550 INVVIGIELADKLFYIE-------KGSPVQALVN------TGHKVGSDSQAPSYDKNIEC 596 + IE + P K S + + + E Sbjct: 2721 SEDELDDNPDVLDSKIETAQRQCSETEPQDTKEENAGDLEELSKTSSKTNSTASRAMDEK 2780 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 K+E +D E+ +I+++R R R+ T + I Sbjct: 2781 DEYSSGEAAGEKAEQNDDDNIKSQEEDQPVIIKRKRGRPRKHPLETALKTKEDCKTDTGI 2840 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 V + + N + + D S Sbjct: 2841 VTVEQPPPGGKPKSTQTDESNKETTTQQERSVSNDDSEEKT 2881 >gi|332855357|ref|XP_524246.3| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 87 [Pan troglodytes] Length = 2785 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 19/213 (8%), Positives = 53/213 (24%), Gaps = 17/213 (7%) Query: 517 HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVN 576 + T + ++ + E E + E+ + ++ Q N Sbjct: 1470 KQVHGETRKSWKAWKEEWEKRLLQEEEKLHQAGAKLSPEEEMLQEDKKLKWEEWKQVWEN 1529 Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + Q ++ + + E+ +R R Sbjct: 1530 MLSSKSKEQQYKDEEEVTLEEEVSREGEEKEQQ---------VTEEQRQIQEEHKRARIH 1580 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--------DITNHNLLENGAHGFTE 688 R+R + A ++ + + + IT + A G Sbjct: 1581 RKRARAEKKRAQEERKLAQEEEKLAQEERQLAQEKRKLAQAYMKITQDDREMAQAEGKIA 1640 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + ++ + + + K + W++ Sbjct: 1641 QKEETLAQRGEKLSQEAEKLAQKRKKLAKKWEK 1673 >gi|308454214|ref|XP_003089756.1| hypothetical protein CRE_07908 [Caenorhabditis remanei] gi|308269001|gb|EFP12954.1| hypothetical protein CRE_07908 [Caenorhabditis remanei] Length = 798 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 12/145 (8%), Positives = 27/145 (18%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P + + SD+Q + + P ++ Sbjct: 75 PAKRVRQEDEAGPSDNQRSLPVRRTPAKRGRQDDETGPSGTQNTPRVRRTPAKRGRQNDE 134 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 RR + + + + N +N G + Sbjct: 135 AGPSDSRRPQNNPRQRPPKTPKNPRTPNTPKTPRTTRSQKSQRTPNTPKNQNKWKGPRTS 194 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVK 714 P + + K Sbjct: 195 GKPRTPNTPKTRRKQKWTKGMKNKK 219 >gi|302890002|ref|XP_003043886.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256724804|gb|EEU38173.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1201 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 3/146 (2%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 ++ + G+ S +D+ + D D+ ++ +S + + Sbjct: 131 AESSDDEPFTFGASSTRRRPRARPSVKDEDDYDEEEVEQAEDTDTMDDFIASDSDEDVSR 190 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++R+R +PA + + S V + I DS +E ++ L G+ NY Sbjct: 191 PKKRKRSSKPAAPRKRSNMSSPVPAPDIDIKDS---ILEDDEMMEDILEGEGSTASQWNY 247 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKT 716 D + ++ DP K+ Sbjct: 248 DPKSSEKHPVMKPAERAAKDPKYKEK 273 >gi|260796101|ref|XP_002593043.1| hypothetical protein BRAFLDRAFT_120702 [Branchiostoma floridae] gi|229278267|gb|EEN49054.1| hypothetical protein BRAFLDRAFT_120702 [Branchiostoma floridae] Length = 1736 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 14/166 (8%), Positives = 32/166 (19%), Gaps = 7/166 (4%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 L + + + + + + I Sbjct: 1294 RSDPALDR-DMRDVRNLRAERDLRDARSDRDIRAERDLRPERDMRGDVRSDIDIRSDRDF 1352 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRR----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + + E + R R+R RR + HD+ Sbjct: 1353 P--SEALDREVRGRQESRERPRQRSYERLRRSRSGSHDSRSSKLSEKRSRRGRSPERKQR 1410 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 S ++ T + D + + + K Sbjct: 1411 PRSLDRERKKQQSSDDKSTASQDTRTEEEARTKTPEPKPADKEEEK 1456 >gi|158340272|ref|YP_001521442.1| hypothetical protein AM1_B0410 [Acaryochloris marina MBIC11017] gi|158310513|gb|ABW32128.1| hypothetical protein AM1_B0410 [Acaryochloris marina MBIC11017] Length = 297 Score = 39.2 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 53/206 (25%), Gaps = 31/206 (15%) Query: 527 VVLYLLNQKRATIVEYEARF---GVSIN----VVIGIELADKLFYIEKGSPVQALVNTGH 579 V+L L + T+ E EA+ I ++ L + I +G Sbjct: 10 VLLELKTHYQETLAELEAQTIQLKTKITSLDTLIEDPLLGSDILSILQGEAASIESEAPG 69 Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 +++ P +S + + K+ + + Sbjct: 70 STVANTVEP---------------------KSKPKKTTQKAASKKKSATPKKPDSTTKTK 108 Query: 640 PATDHHDAGVVSDVSSIQNVIDDSFDMYM---EPSDITNHNLLENGAHGFTENYDVSIPP 696 + + Q S + S + + + V+ Sbjct: 109 GTVKPEVEATATPKKAAQKASPSSGKRKSPTSKKSASAPKSTQKVKPKAEATSPQVAQKA 168 Query: 697 VSTPEMESSNSSSDPIVKKTRWWKRR 722 S S N +S KKT+ RR Sbjct: 169 SSKKSSTSKNIASQNKAKKTKRQGRR 194 >gi|324992025|gb|EGC23947.1| translation initiation factor IF2 [Streptococcus sanguinis SK405] gi|324994118|gb|EGC26032.1| translation initiation factor IF2 [Streptococcus sanguinis SK678] Length = 931 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 47/182 (25%), Gaps = 4/182 (2%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R E +V ++ L + + + + R S A Sbjct: 5 RLYEIAKELGKESKEVVARAKELGLDVKSHSSSVEADASERIKSSFTKKA----AAPQAT 60 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +EK + Q + + + + + + E Sbjct: 61 VEKPAAAQPSPQKTPAKEAAPVKAEQTEAKAAAQPEAKAETVAPVKRPQSRNFKAEREAR 120 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +RR+++ R+P D + + D P+D ++ + + Sbjct: 121 AKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRN 180 Query: 685 GF 686 G Sbjct: 181 GQ 182 >gi|18420875|ref|NP_568464.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|13430600|gb|AAK25922.1|AF360212_1 unknown protein [Arabidopsis thaliana] gi|14532872|gb|AAK64118.1| unknown protein [Arabidopsis thaliana] gi|332006012|gb|AED93395.1| U2-associated protein SR140 [Arabidopsis thaliana] Length = 946 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 42/164 (25%), Gaps = 5/164 (3%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +++ + + + + + + E + Sbjct: 785 AQPDNGMDEEQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVDYGLSGP 844 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + I +R+ +R + ++ G S + D + + Sbjct: 845 NEGNRNQKSIIERKEKREDSQESSKKRHRGENKSQSPPRKSSTRERDHDLGRDRDRERHR 904 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + H + D S ++ S + R W+RR Sbjct: 905 DRDRQHDLNRDRDRREKSSSHDRDDNDRSKE-----RDRDWRRR 943 >gi|85089553|ref|XP_958002.1| hypothetical protein NCU06935 [Neurospora crassa OR74A] gi|28919305|gb|EAA28766.1| predicted protein [Neurospora crassa OR74A] Length = 1347 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 10/156 (6%), Positives = 30/156 (19%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + +E + E+ + + Sbjct: 442 ERIRLLDERTQKQAQEHRKQAEAQKQAVEARKRFEEQKRLEEQKRLAEERKKAEAQKRCE 501 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ R++ + + + ++ +E Sbjct: 502 EERKQAEARKQAEEARKRIEEQKRLEEQKKLEEQKRLEEQKKLEEQKRIEEQKRIEEQKK 561 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 E + + KK KR Sbjct: 562 LEEQKKLEEQKRIEEQKRIEEQKKLEEQKKLEEQKR 597 >gi|221481979|gb|EEE20345.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 820 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 67/256 (26%), Gaps = 11/256 (4%) Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 +S Q R LE + G G R + ++ V Sbjct: 107 VSSQLEREKDLERESDRDFMSDGRGDGEDVERRTEKESRKGNGREKRQKRFSVEVRESPQ 166 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGI----ELADKLFYIEKGSPVQALVNTGHKVG 582 ++++RA++ E R I EL + +EK S Sbjct: 167 -----MHRRRASLAGEEWREAGDIGEESEAGPHAELEVEADVVEKKSEKTRRTRHRPVKK 221 Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 A K + +DE P + EE+ G +++ R R Sbjct: 222 KAEPALDRKKTQADLEEDEGEAPRAALSRRTRTKVEEDGEETRGKAKEKTSGNARGRGDN 281 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYME--PSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 A + + + P D + + S P + Sbjct: 282 TGSVASEGAPQPRGPLRRSPRLEGQEQHGPEDALDDLFSFDSPSPECAPAVSSSLPAGSG 341 Query: 701 EMESSNSSSDPIVKKT 716 ++S + + ++ Sbjct: 342 RRKASQTEKNKKRREV 357 >gi|189054268|dbj|BAG36788.1| unnamed protein product [Homo sapiens] Length = 1148 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 424 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 483 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 484 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 537 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 538 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 595 Query: 720 KRRK 723 R + Sbjct: 596 SRER 599 >gi|189192112|ref|XP_001932395.1| hypothetical protein PTRG_02062 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187974001|gb|EDU41500.1| hypothetical protein PTRG_02062 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 9693 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 38/162 (23%), Gaps = 1/162 (0%) Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + IE+ P + + + + +S Sbjct: 2088 IERDPRDIEPSRSIER-DPRDIEPSRSIERDPRDIELPRPSEPSRNGEPSRFAELQRSPE 2146 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 D+ S ES+ +R R + S +S S + P Sbjct: 2147 STRWSDSQRSPESSRYSDMQRSPESTRYSDSQRSPESTRSTDASRSTQPSRSAEPTRVPD 2206 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + + + P + + +S+ + Sbjct: 2207 PSRYAEPSRSSEPSRSVDQARDHTPARSTSQDKESSAIKAVT 2248 >gi|149641818|ref|XP_001509977.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 664 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 10/145 (6%), Positives = 23/145 (15%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G+ + + + + S + Sbjct: 428 LKQSHTKSFRVRDRGTPERKRGDPSQERDCERRLKDREGKQEQPRYREPHKKDSSRNRPE 487 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + RR+ RR ++ + D E G Sbjct: 488 QEDKPRRKDRREMEGNNKERREKVWEDRCSERDRPKNGRDRAIEDREKCQEKEEHRKGRK 547 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPI 712 + + S Sbjct: 548 DRPNKDDKCGDRDRSTSERDRGRRE 572 >gi|1848181|emb|CAA72121.1| SRrp129 [Homo sapiens] gi|2822460|gb|AAC39565.1| splicing factor Sip1 [Homo sapiens] gi|119578296|gb|EAW57892.1| splicing factor, arginine/serine-rich 2, interacting protein, isoform CRA_a [Homo sapiens] Length = 1148 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 16/184 (8%), Positives = 41/184 (22%), Gaps = 8/184 (4%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + + S+ + EK V + ++ P ++ Sbjct: 424 ADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 483 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + + Q + R+ + P+ + A S Sbjct: 484 TTWSPNKDTPQEKKRPQSPSP-----RRETGKESRK-SQSPSPKNESARGRKKSRSQSPK 537 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 D + + S + +E+ + +K+R Sbjct: 538 KDIARERRQSQSRSPKRDTTRES--RRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ 595 Query: 720 KRRK 723 R + Sbjct: 596 SRER 599 >gi|328848556|gb|EGF97764.1| hypothetical protein MELLADRAFT_84477 [Melampsora larici-populina 98AG31] Length = 1233 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 38/350 (10%), Positives = 109/350 (31%), Gaps = 23/350 (6%) Query: 382 IDVNSGRSTREHCIED-TALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVE 440 DV+ GR+ E + + ++ E+ + + + ++ + + + ++ E Sbjct: 754 ADVDKGRAEVEKSKRELEKAKAVIDETEDKIFASFCKRIGVQNIREYEGYQLEVHQKTSE 813 Query: 441 KKLKESLKKDRARVQVGA--------ISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGY 492 ++ + R + Q+ I LE S QR ++++ E + + Sbjct: 814 EQEQLETTLSRIKHQISFETGQLNGLIERLSTLETSSQRTQANLEELMVTMAELKE---E 870 Query: 493 IRSQSSVALSILRSVEEYLLQYTAHN---IIVHTHSDVVLYLLNQKRATI----VEYEAR 545 I+ + + R + + + S+ L++ I E E Sbjct: 871 IKILDNEIVETERQHSDLVKAQDEASRAVADAKKKSNKASRQLDEIIKEIGTRNDEIEKL 930 Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP 605 I++ +L + +G +A ++ + ++ + + D+ + Sbjct: 931 ASERISIYRRCKLESIDLPLLQGDLRKAPIDEVVRPVVPMDVDGQEETQQALVVDDYGIE 990 Query: 606 IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP-ATDHHDAGVVSDVSSIQ---NVID 661 + +D +++ E + K + + A + +V Sbjct: 991 LDYEGLEDDEKEDGGPEVERQLEEKIELLKSKMEAMAPKTRSVERLEEVEVRLREHEKEF 1050 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 ++ + + + FT+ Y + E + + P Sbjct: 1051 EAARKRAKQTKDDFTEIKNQRVELFTKAYTHISEKIDGVYKELTKGKASP 1100 >gi|302306891|ref|NP_983318.2| ACL086Cp [Ashbya gossypii ATCC 10895] gi|299788735|gb|AAS51142.2| ACL086Cp [Ashbya gossypii ATCC 10895] Length = 1207 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 35/124 (28%) Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 K E Q E + + ++Q + ++++ R+R Sbjct: 614 KEEEKRKQVEEEARLKQEAEAREMQRRENQRKKVEEAKRKKDLEMRKRLEEQRRREEEQE 673 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 ++ I D + + + ++ +V + +S D Sbjct: 674 RQRRMKEEIKRKRDQERKQREEEQRKRKQEKELKKLQSLEVKKKREEDDKPTEESSQEDN 733 Query: 712 IVKK 715 + K+ Sbjct: 734 LHKE 737 >gi|123965307|ref|YP_001010388.1| hypothetical protein P9515_00721 [Prochlorococcus marinus str. MIT 9515] gi|123199673|gb|ABM71281.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9515] Length = 308 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 3/141 (2%) Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 + + IE Q + ++ + + +RRR R + Sbjct: 134 PQEDDIEEDYIEGRSQRRNISRAIPESAVSRRRPPLRESNKFENEEPKRRRNRSEDRMPN 193 Query: 644 HHDAGVVSDVSSIQNVIDDSFD---MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + + ++ + + N +L ++ + T + Sbjct: 194 EERRASFGERRASRSDVKRGSRPLPNKEVSRKLNNSSLKDSFSSTKTTRQSIRSQIPREK 253 Query: 701 EMESSNSSSDPIVKKTRWWKR 721 ++S S + KKTR +R Sbjct: 254 VEDASFSQNINEEKKTRQARR 274 >gi|297698361|ref|XP_002826293.1| PREDICTED: retinoblastoma-binding protein 6-like [Pongo abelii] Length = 1792 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E+S Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGEREKSPRSEPP 1058 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1059 IKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150 >gi|291393965|ref|XP_002713340.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain containing 1 isoform 2 [Oryctolagus cuniculus] Length = 1452 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 14/153 (9%), Positives = 31/153 (20%), Gaps = 4/153 (2%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR- 633 + +++ + + D + G +RR Sbjct: 1293 RPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSADNTLERREKRRDGSPERRRER 1352 Query: 634 ---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R R P+ + D S + + Sbjct: 1353 SPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAKSTDRRRARSPERRRERSLDR 1412 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 V E E ++ S + R ++ Sbjct: 1413 RSREDRVGPREREEASGKSSRHPPEQRRRPYKE 1445 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 11/123 (8%), Positives = 24/123 (19%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P + G D A + +A + + E + Sbjct: 1273 QPSEHHTWNGTSRKPDGGACRPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSAD 1332 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RR +RR + + + + + Sbjct: 1333 NTLERREKRRDGSPERRRERSPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAK 1392 Query: 689 NYD 691 + D Sbjct: 1393 STD 1395 >gi|123403281|ref|XP_001302210.1| hypothetical protein [Trichomonas vaginalis G3] gi|121883477|gb|EAX89280.1| hypothetical protein TVAG_222340 [Trichomonas vaginalis G3] Length = 997 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 79/659 (11%), Positives = 196/659 (29%), Gaps = 38/659 (5%) Query: 71 FLEIHPDYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFS 130 ++ + +I +Q L K + T E + ++ + + E+ + Sbjct: 193 IKDLESEITKITQEKQQILDKSKQKSSTIRELRTQVENNKIISEQLEKAKSELNSMNKKQ 252 Query: 131 QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190 + + SA V + + + Q ++ + +++ ++ Sbjct: 253 SIEDTYRMASAKMQDVVKNLNEEIIPLRQSRDEALVLLQKQMLLIKKYESSLELQDDKIR 312 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILR 250 A ++ + L I N + ++L+++ I+ Sbjct: 313 LLNAKISELTDTINQNDDL---------IQESNENHAELEDLRQLVIDCITAFQPNYIIT 363 Query: 251 TAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEI 310 T + + ++ + LNS V +L K + DL + Sbjct: 364 AEQLPETISSLCHNDPTVLTRDIDFESSELNSNHSESVNLIDSLTKFCL-DLINGKVDLK 422 Query: 311 IVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGY 370 + + +KL S +R+ + L ++ Sbjct: 423 HFTSSYSPIVVDENLKLDAMSKLNQIREDYLQIIDNNEE----------DPIIGLLNKKD 472 Query: 371 VIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDM 430 I L +++ +++ + +L+ A +I DL I ID Sbjct: 473 FNIQNQNELSISLISTNCASKVLELSKKSLEALYPAKRQIPLICSNEDLPSEISRFVIDT 532 Query: 431 EEKKNNRSVEKKL-------KESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLES-TTK 482 + + V++ + + D +V V S L++ Q++R + + Sbjct: 533 KTGLE-KLVKQIMTVVHIDSNSLNEIDTIKVFVDICSK--LIQDLDQKVRPILGFAGKVV 589 Query: 483 VCTYCKGA---GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLN----QK 535 G G ++ + I + + + + V ++ + L + Sbjct: 590 EIPSQIGEYIDGLLKREEEKIEVIKKENSLKIKELNSKLADVKQTNEALNDKLRKIAFEL 649 Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE 595 R E E + + +E+A IEKG + V S K E Sbjct: 650 RTVFNELEKTRKQNSALTEQLEVATDRIEIEKGENTKIQERQNQYVSVIKSLQSEVKRQE 709 Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + ++ + + E + + + + +E + RK++ + + S Sbjct: 710 ALLKERQEVNERRIEQMLENERQLRFDEVDALKRKQKAELSELQNQVGRKREKLSEIKVS 769 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 +Q + ++ + EN + + + E+ N+ + VK Sbjct: 770 LQKLREEKEETEHALKMKITELEQENESTIRMAEDNDVLCKSRIEELMQLNTELEGKVK 828 >gi|91094257|ref|XP_969374.1| PREDICTED: similar to CG13625 CG13625-PA [Tribolium castaneum] gi|270016259|gb|EFA12705.1| hypothetical protein TcasGA2_TC002339 [Tribolium castaneum] Length = 553 Score = 39.2 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 34/163 (20%), Gaps = 15/163 (9%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + ++ D +P + + + S D+I Sbjct: 190 RSRNGDRDISPPRSRRDDDISPPRRRRDDDISPPRRRKDDDISPPRRRRDDDISPPSRRR 249 Query: 627 VIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT----- 674 RRRR +R D D + + + Sbjct: 250 NDDISPPRRRRDDISLPRKRRDDDTSLPRKRRDDDTSSPRKRRNDGISSPRKRNNDDISP 309 Query: 675 -NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + D PP P S +KKT Sbjct: 310 ARKRSRDTSPSRRKGPKDGDSPPRRHPNKTEERQSEK--MKKT 350 >gi|321252636|ref|XP_003192475.1| pol II transcription elongation factor [Cryptococcus gattii WM276] gi|317458943|gb|ADV20688.1| Pol II transcription elongation factor, putative [Cryptococcus gattii WM276] Length = 1118 Score = 39.2 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 10/149 (6%), Positives = 34/149 (22%), Gaps = 5/149 (3%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ + + ++ + + ++ +EE Sbjct: 946 RAEEQARIRAAEEARQAELRIKAEEIAEQRRKAREDAMAWQEELAARQAEEEAKRAANME 1005 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 +R+RR+ D + G + + + + + Sbjct: 1006 KRKRRKEGIVDSGEDGEGEGRKREKKQRKKKTKEEKKSRKARSKSEVGTSDEEEEARETG 1065 Query: 693 SIPPVSTPEMESSNS-----SSDPIVKKT 716 + + S + K+T Sbjct: 1066 DEEDEEISRVRKAKSTLAMLKAKRKAKRT 1094 >gi|301320786|gb|ADK69429.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 384 Score = 39.2 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 51/163 (31%), Gaps = 5/163 (3%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + I + + TG + + ++ I+ DE P P ++ +E Sbjct: 143 YEIIITAKNENKHFTGSTNIFFIEDSTINEKIKPELPDEDKSPEPGYNEFSPNDSDLSTE 202 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 +S + RP + D + + + + + D S+ TN + N Sbjct: 203 DSNNRNNGENPQGDENRPGNNSGDNSSRNPNNRTPDS-NSNRDGSSSNSNGTNDSRPNNE 261 Query: 683 AHGFTENYDVSIPPVS----TPEMESSNSSSDPIVKKTRWWKR 721 + + P + S ++ +WW++ Sbjct: 262 NETSSNPTNPPNEDQPGDYLNPYKPGNGSPNNGTNTDDKWWEK 304 >gi|291393963|ref|XP_002713339.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain containing 1 isoform 1 [Oryctolagus cuniculus] Length = 1481 Score = 39.2 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 14/153 (9%), Positives = 31/153 (20%), Gaps = 4/153 (2%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR- 633 + +++ + + D + G +RR Sbjct: 1322 RPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSADNTLERREKRRDGSPERRRER 1381 Query: 634 ---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R R P+ + D S + + Sbjct: 1382 SPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAKSTDRRRARSPERRRERSLDR 1441 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 V E E ++ S + R ++ Sbjct: 1442 RSREDRVGPREREEASGKSSRHPPEQRRRPYKE 1474 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 11/123 (8%), Positives = 24/123 (19%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P + G D A + +A + + E + Sbjct: 1302 QPSEHHTWNGTSRKPDGGACRPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSAD 1361 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RR +RR + + + + + Sbjct: 1362 NTLERREKRRDGSPERRRERSPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAK 1421 Query: 689 NYD 691 + D Sbjct: 1422 STD 1424 >gi|296203490|ref|XP_002748919.1| PREDICTED: M-phase phosphoprotein 8 [Callithrix jacchus] Length = 859 Score = 38.8 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 6/179 (3%) Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 R I+ K ++ + L D + + + E + Sbjct: 197 RTKKRISEAREELKESKKPKKDEVKETKELKKVKKGEIRDLKTKTREDLKENRKTKKEKW 256 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + ES + +++ E R R++ + AG + + DS Sbjct: 257 VESQVESESSVLNDLPFTEDDSEGLLSESREERQKTKSAREKAGQDAGLERSFEKPLDSA 316 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E +D+ + + +T + KK R R K Sbjct: 317 LSAEEDTDVRGRRKKKTSRKSEDTRDSRKLENKNTFL------EKKTVPKKQRNQDRGK 369 >gi|172040384|ref|YP_001800098.1| transcription termination factor Rho [Corynebacterium urealyticum DSM 7109] gi|171851688|emb|CAQ04664.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 573 Score = 38.8 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 31/137 (22%), Gaps = 4/137 (2%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 K + + + + S + E+++G Sbjct: 58 ASDRPEQKAEKKAEQRSERNERGEGKQADRRDEQQDGHASSKEPENNSGQQEEQNSGNNE 117 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN----HNLLENGAHG 685 + RR R D+H + + +N N E+G Sbjct: 118 REDRRNNRHNDGGDNHQGRRRRNRRNRRNRRGGDRGHDRNNGHRHNGHGDGGNHEDGGEN 177 Query: 686 FTENYDVSIPPVSTPEM 702 E D P P Sbjct: 178 RKEQQDHKPEPQEAPVA 194 >gi|327283243|ref|XP_003226351.1| PREDICTED: hypothetical protein LOC100567093 [Anolis carolinensis] Length = 3006 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 65/261 (24%), Gaps = 10/261 (3%) Query: 472 IRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYL 531 + L S + + R S R ++ +L + ++ L Sbjct: 470 VHKPYLYSKYYSDSDDERTVEQRRLSVAKEKEERLLKRHLNREKLEEKRKQKAAEKTKML 529 Query: 532 L-NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 + +I E + ++ +A ++ K S Sbjct: 530 KTGNQVKSIQNLEESSSKGLEQKASGASIKDALKEQRFLEKKAALSRKRKRESRHDEEGR 589 Query: 591 DKNIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR-----RRRRRPATD 643 K E +D E L E ++++ + E +++K R + Sbjct: 590 KKKHEQPEEDLEEPLKINESGEKAKEVKASQGKTEGNKLVKKLPESVHITDENRSDSKIE 649 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS--IPPVSTPE 701 S ++ + D + N E T S + Sbjct: 650 KEHKRKTSSSFQMEGIQQDGELCDTKSQIDKAENNPEESQKQRTVFKTEKHIKKDDSETQ 709 Query: 702 MESSNSSSDPIVKKTRWWKRR 722 + + K R K R Sbjct: 710 NVKTVPKKEARSSKDRNEKER 730 >gi|291393967|ref|XP_002713341.1| PREDICTED: membrane associated guanylate kinase, WW and PDZ domain containing 1 isoform 3 [Oryctolagus cuniculus] Length = 1469 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 14/153 (9%), Positives = 31/153 (20%), Gaps = 4/153 (2%) Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR- 633 + +++ + + D + G +RR Sbjct: 1310 RPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSADNTLERREKRRDGSPERRRER 1369 Query: 634 ---RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R R P+ + D S + + Sbjct: 1370 SPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAKSTDRRRARSPERRRERSLDR 1429 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 V E E ++ S + R ++ Sbjct: 1430 RSREDRVGPREREEASGKSSRHPPEQRRRPYKE 1462 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 11/123 (8%), Positives = 24/123 (19%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P + G D A + +A + + E + Sbjct: 1290 QPSEHHTWNGTSRKPDGGACRPKDRAAADGRRDAQPERSAANGPKRRPPEKRREGTRSAD 1349 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RR +RR + + + + + Sbjct: 1350 NTLERREKRRDGSPERRRERSPGRGRDSSPSHRRRSLERLLDQRRSPERRRAGSPERRAK 1409 Query: 689 NYD 691 + D Sbjct: 1410 STD 1412 >gi|296809281|ref|XP_002844979.1| SAP domain-containing protein [Arthroderma otae CBS 113480] gi|238844462|gb|EEQ34124.1| SAP domain-containing protein [Arthroderma otae CBS 113480] Length = 656 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 5/150 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES-TGV 627 +PV + A ++I + P + E ++ T Sbjct: 146 APVPTPQPAVAEAEPAPVAELAVEDIAPAQPEPQPEPEQEPIQDESATKTSPTDADITKE 205 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R+R+RR + S + ++ P T + Sbjct: 206 DTDESRKRKRR---SQTPPPSPRSIALKKAKLEEEQQQSRPVPEQATADEQNKEQEETSA 262 Query: 688 ENYDVSIPPVSTPEME-SSNSSSDPIVKKT 716 PP ++E ++ P K+ Sbjct: 263 AAPVTVEPPAQDTDVEMKESTPPAPEPKRD 292 >gi|159130402|gb|EDP55515.1| conserved serine-rich protein [Aspergillus fumigatus A1163] Length = 1042 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 12/232 (5%) Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGV--SINVV 553 ++R + ++ V V N+ A + E + + Sbjct: 626 PQERVEQLMREANQKFAKHHKDKEEVEEMIKVAK-EQNKDPAYVRNLEELLAKLDRVQKL 684 Query: 554 IGIELADKLFYIEKGSPVQALVNTG-----HKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 + + +E+ +G+ SQ + + + Sbjct: 685 EKRNRSSERDRLERARADLRAKREEIAKMEADMGTSSQDKQQKADSAKINGNANTSSAET 744 Query: 609 SESLEDIQDNIVSEESTGVIRK----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + + + + + E G ++K + P T + + + Sbjct: 745 ASKAKGAEKSTPAAEPNGSVKKATEATKGAELSSTPTTAERKGSTKKATEAKKGPDSTAT 804 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 +P D +PPV+T + KK+ Sbjct: 805 PRAPKPRPTEEEAKGTPSESPENTTEDAKLPPVTTIQRGDLPKGKANGTKKS 856 >gi|115672742|ref|XP_001192677.1| PREDICTED: similar to telomere-associated protein RIF1, partial [Strongylocentrotus purpuratus] gi|115707422|ref|XP_788601.2| PREDICTED: similar to telomere-associated protein RIF1, partial [Strongylocentrotus purpuratus] Length = 2330 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 40/153 (26%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + TG P + + E S + + S +S + Sbjct: 863 SSTMDETGMDETVIEVMPHSVEEVPERDVVETEKSAEVSSQKSTRRRSGRSRKSQSSKEE 922 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R + T SD + + N + ++ Sbjct: 923 VARSQEENEEETSQDSTCADSDNVEQVTTRRGRSKLSQNSENERNESQEKSSIAEVKNTA 982 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P T ++ + +S+ K+T KR++ Sbjct: 983 RRRGKPRKTEDVGEESQASESGEKETEEIKRKR 1015 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 43/152 (28%), Gaps = 10/152 (6%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP-------KSESLEDIQDNIVS 621 + + + G + + + + ++ + K ED+ + + Sbjct: 941 ADSDNVEQVTTRRGRSKLSQNSENERNESQEKSSIAEVKNTARRRGKPRKTEDVGEESQA 1000 Query: 622 EESTGVIRKRRRRRRRRRPAT-DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 ES + +R+R R T D + + + + D +L + Sbjct: 1001 SESGEKETEEIKRKRSRPQKTCDRDEDSQLEEAEEGKKSEKTRG--RPGKEDEKISSLDK 1058 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 N +E + + E + S Sbjct: 1059 NDQETDSEVLGTPTKRGRSRKFEGNEGGSQKQ 1090 >gi|195064329|ref|XP_001996546.1| bt [Drosophila grimshawi] gi|193892092|gb|EDV90958.1| bt [Drosophila grimshawi] Length = 8844 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 29/214 (13%) Query: 464 LLEMSRQRIRSSVLESTT-KVCTYCKGAGYIRSQSS----------VALSILRSVEEY-- 510 L+++ RQR RSSV T + G + A +L++ Sbjct: 1170 LMDIIRQRRRSSVRNLMTKEPIRNESFLGVVLKPVIRDAKEQAEPQQAKQLLKANATEQF 1229 Query: 511 --LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA--------RFGVSINVVIGIELAD 560 A + + + + KR + +YE I + + Sbjct: 1230 NPTKASKAQISDLKKPEGLATLVDDYKRPQLEKYERTDIEKSKPEKTTPIIIPPEPQ-KT 1288 Query: 561 KLFYI-EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 I ++ + + + + P + E +P + + Sbjct: 1289 PELKISDENQKDDKPKMSKMQPPAPGEPPKIEVIREKRPSLAPEVPSRRGSLVPPADTGR 1348 Query: 620 VSEESTGVIRKRRRRR----RRRRPATDHHDAGV 649 +K R RRRRP+ D V Sbjct: 1349 RPSLIINDEKKLRPGEVMDTRRRRPSIDVRRPSV 1382 >gi|195161703|ref|XP_002021701.1| GL26649 [Drosophila persimilis] gi|194103501|gb|EDW25544.1| GL26649 [Drosophila persimilis] Length = 2957 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 34/148 (22%), Gaps = 1/148 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E + + + + + DE + Sbjct: 1178 EATPAAPSFSHPKKSPITKPLKKNLLTQMRQEESDEEAHTQEAETVAPTVPPVPAPPPLA 1237 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + ++R+RR +G + ++ + + + +E E Sbjct: 1238 VLEERQRKRRSSEDAKDSKESSGSEAPP-AVSEKLKRNNEQDIEEEADQTARAKEKHLQT 1296 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIV 713 + S+P E DP Sbjct: 1297 NQKLPSPSLPVKEKIVSEPPIKQRDPSP 1324 >gi|306830583|ref|ZP_07463750.1| translation initiation factor IF2 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977562|ref|YP_004287278.1| translation initiation factor IF-2 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304427301|gb|EFM30406.1| translation initiation factor IF2 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177490|emb|CBZ47534.1| Translation initiation factor IF-2 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 908 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 61/194 (31%), Gaps = 6/194 (3%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 L + +VEY G+++ + + +++ + + S Sbjct: 13 LGKSSKEVVEYAQELGLAVK---SHSSSVEESDVKRIVAKFSDKPQSTPAKPKVEKASEK 69 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV---IRKRRRRRRRRRPATDHHDAG 648 + A P+S + + ++ E+ K+RR +RR ++ +D Sbjct: 70 TVAQAPKATPATPAKPQSRNFKAEREARAKAEAERRANGGDKKRRNDQRRDDRSNRNDRQ 129 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + + QN D + + N + ++ + + + Sbjct: 130 GNAQNNRKQNKRDRNSQNHNRRDQRDNRHDNRQQPAKPRVDFKARAAAIKAEQNAEYSRQ 189 Query: 709 SDPIVKKTRWWKRR 722 S+ + + KR+ Sbjct: 190 SENRIHEQENAKRK 203 >gi|195126835|ref|XP_002007874.1| GI12133 [Drosophila mojavensis] gi|193919483|gb|EDW18350.1| GI12133 [Drosophila mojavensis] Length = 1847 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 36/163 (22%), Gaps = 28/163 (17%) Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR----------------- 631 ++ ++ + + +S + + +E R R Sbjct: 327 KEVNPVKNSDKETSGVSSKESSKDQSKRSREAPQEHKDKQRDRFKDRQRERSRESRKDSS 386 Query: 632 --RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN---------HNLLE 680 R + R R D SS +S + Sbjct: 387 KERPKERSRELFRDTKRERSKERHSSRSKERKESSNSKQRKGSKERMDCSNGKQMERSKN 446 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N D E +++S + + +R+ Sbjct: 447 KRERSKERNSDKQREHPKEKRREDNSTSRSIEKRSSATRDKRR 489 >gi|195116391|ref|XP_002002739.1| GI11272 [Drosophila mojavensis] gi|193913314|gb|EDW12181.1| GI11272 [Drosophila mojavensis] Length = 2942 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 5/226 (2%) Query: 493 IRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQK--RATIVEYEARFGVSI 550 I + A + + E + +++K ++ E + V + Sbjct: 583 IAEDETNANIVEKESAEKPAEDVTEKTEEPKPISNEQKHVDEKPEKSVEESVEQMYKVRV 642 Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 + IE K D + + PK E Sbjct: 643 IETSNESVEIVKKIIEAEKTDVKDELETRKKVESVVEKVKDDIN--LNMNHVGKEEPKEE 700 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 ++++ ++ + V + + ++ D+ S V+S + + + Sbjct: 701 TIKEAAVAADNDTAPKVEPLKPSIAENIKLISNETDSQKTSLVASSCESVKAAGNGAEAA 760 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++I N + G E + + S P + + + P K Sbjct: 761 TNIDKSNETAVASEGN-ELAEPAAEINSKPRLTETVQNELPSTSKD 805 >gi|115842004|ref|XP_800457.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115931757|ref|XP_001177590.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 653 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 32/155 (20%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K + D + ++E E+ ++ ++V + Sbjct: 50 KAQHSPQKKREEKEEDGDDVMALLRGGLSSGMKNEETKSRRPVENEDEQNQSVVVTRTPK 109 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + S E Sbjct: 110 ATKSEETKEPDVPKKASDRQKETEDVAKKSAEEKTAGKRKEDTDSVTIKRPTNEETVDAA 169 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ + + + E N S + KK +R Sbjct: 170 MDDKVKNGEKKNETKAEKGNGSKEGSSKKPVERRR 204 >gi|74197292|dbj|BAC30050.2| unnamed protein product [Mus musculus] Length = 544 Score = 38.8 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 65/226 (28%), Gaps = 8/226 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 V++NV + L ++ S KN + ++ + Sbjct: 172 VTVNVKKDK-VEKALKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENERE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + E + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 S + N + + +EN D + + + ++ + Sbjct: 291 SKRSDTPLKRPRLDKNSPQEQSKKRSENSDKDLSRRRSSRLSTNGT 336 >gi|326924514|ref|XP_003208472.1| PREDICTED: LOW QUALITY PROTEIN: transcriptional regulator ATRX-like [Meleagris gallopavo] Length = 2479 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 6/158 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + K + + + + ++ L E ++ + T Sbjct: 1308 QTENIGDDENEKEDNSESNSEEEDSKKPRYRHRLLRHRLTVSDGESGEEKKGKPKETKEG 1367 Query: 629 RKRRRRRRRRRPATDHH--DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN----LLENG 682 ++R RR+ + D ++ V +VS ++ + N + Sbjct: 1368 KRRNRRKVSSDDSNDSEFHESAVSEEVSESEDDQRPRTRSAKKAEAEENQRSYKQKKKRR 1427 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 ++ S E E ++ S P + + K Sbjct: 1428 RIKVPDDSSSENNNKSNSEDEENDDSKSPGKGRKKIRK 1465 >gi|297464035|ref|XP_002703055.1| PREDICTED: ankyrin repeat domain 12 [Bos taurus] gi|297489736|ref|XP_002697790.1| PREDICTED: ankyrin repeat domain 12 isoform 2 [Bos taurus] gi|296473733|gb|DAA15848.1| ankyrin repeat domain 12 isoform 2 [Bos taurus] Length = 2050 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 5/172 (2%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKS 609 + + +++ + H V S + KN D Sbjct: 889 TIKKNDDRDKSREKMDRKHDKEKPEKERHPVESKEKHLMEKKNKPSDNSDYTKSEKSKNK 948 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 E ++ S +S + + + R+ TD + A +S + D+ Sbjct: 949 EKDREVDKKDKSRDSVNISNSKHFQEERKSSITDSNKAQHEKTLSLKEKTKDEPLRTPDG 1008 Query: 670 PSDITNH----NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + P+ +SS +S D K+ R Sbjct: 1009 KEKDKKDIDRYKERDKHKDKILSSSLKLKSEADKPKPKSSPASKDTRPKEKR 1060 >gi|327354487|gb|EGE83344.1| Pal1 cell morphology protein [Ajellomyces dermatitidis ATCC 18188] Length = 633 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 35/132 (26%), Gaps = 4/132 (3%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-- 612 + L + + + V + S DK +S S Sbjct: 199 NLSLDTPVDKPSSSKGRRPALPRPENVPPSRPSLSDDKASSRRPARRPSKEESQSRSKGH 258 Query: 613 --EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 I D + R +RR RR + + + + + + +P Sbjct: 259 GRPPIGDIFADPKEPSKSRNQRRPRRNSDSSLMDIPSRPIDPEAERRRRERRQRERDAKP 318 Query: 671 SDITNHNLLENG 682 D + + NG Sbjct: 319 KDGKSRSKRSNG 330 >gi|302501245|ref|XP_003012615.1| forkhead domain protein [Arthroderma benhamiae CBS 112371] gi|291176174|gb|EFE31975.1| forkhead domain protein [Arthroderma benhamiae CBS 112371] Length = 1233 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 3/153 (1%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE---SLEDIQDNIVSEESTGVIRK 630 + + + P+ +K E DE + KS+ E ++ Sbjct: 569 DQPDNEEPEASVERPTVEKESERSEADEPVKAKGKSQQQQRPEPKATVAEPGQAKRRGPG 628 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R + A + + + P T + Sbjct: 629 RPPKDGIMSKRERAEIAREQKLAAKREANGAAAATAISPPPAGTTAGKKPAKTAKEPASA 688 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + PP + + + S+ P+ + R + +RK Sbjct: 689 SATAPPAAASAISPEDPSTAPVKVEKRKYTKRK 721 >gi|282902702|ref|ZP_06310595.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp. aureus C160] gi|282921384|ref|ZP_06329102.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp. aureus C427] gi|282315799|gb|EFB46183.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp. aureus C427] gi|282597161|gb|EFC02120.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp. aureus C160] Length = 534 Score = 38.8 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 18/188 (9%), Positives = 33/188 (17%), Gaps = 14/188 (7%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-------------APS 589 E R G ++ E A + Q Sbjct: 247 EQRNGFIQSLKDDPS-QSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEE 305 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 +D+ + + + D +E + + + Sbjct: 306 QRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKPGKEDNKPGKEDGNKPGKEDG 365 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 N D + G +N + P E N Sbjct: 366 NKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPG 425 Query: 710 DPIVKKTR 717 KK Sbjct: 426 KEDNKKPG 433 >gi|323138232|ref|ZP_08073304.1| TolA protein [Methylocystis sp. ATCC 49242] gi|322396484|gb|EFX99013.1| TolA protein [Methylocystis sp. ATCC 49242] Length = 411 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 39/150 (26%), Gaps = 5/150 (3%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 IEK + + + + + E + P P + + + Sbjct: 133 QPEKKIEKPVEPKPVEAKPAPTPPAKPKAVAPEEKDEPKEAEVVKPKPPTRPKPEKEAKE 192 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++ + R P T+ + + +S +P+ N + Sbjct: 193 TP---APRPPEKPKTEPRTEPKTEAKTEPRLKTDEVA--KLLESKKHEEKPAKAENPDGE 247 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + + ++S+ ++ Sbjct: 248 ASDKKAKGAKPKSGDEAAPKSKFDASSIAN 277 >gi|118358423|ref|XP_001012457.1| Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila] gi|89294224|gb|EAR92212.1| Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila SB210] Length = 2678 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 17/172 (9%) Query: 555 GIELADKLFYIEKGSPVQALVNT-----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + ++ + K GS + + E ++ Sbjct: 2413 DNRERKPKYNNDRRQQDSEDEDEYDVGYKTKEGSHIDEFTRKRREEKNMDKLDNQNNAQN 2472 Query: 610 ESLEDIQDNIVSEE--STGVIRKRRRRRRRRRPATDHHD----AGVVSDVSSIQNVIDDS 663 E EDI I + S +R + R +R + +G N + Sbjct: 2473 EDDEDIVQKIKEDSDFSDEEEENQRSKYRNKRGGGGGQNFSRGSGNQGGNKYTGNQLRKK 2532 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 D +P N + + G + + + E P KK Sbjct: 2533 NDDDYQPRQRENDDQKKRNFQGERKF------NENQNQGEKREYEKKPYEKK 2578 Score = 38.0 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 5/134 (3%) Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA----TDHHDAG 648 + Q + + + + + ++ K++R R R+P D+ Sbjct: 2372 KKKDDTQKQNEKKESDQSNNKQERKDQPAKGGDNKDFKKKRDNRERKPKYNNDRRQQDSE 2431 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + + S N+ + +N D V + +S S Sbjct: 2432 DEDEYDVGYKTKEGSHIDEFTRKRREEKNMDKLDNQNNAQNED-DEDIVQKIKEDSDFSD 2490 Query: 709 SDPIVKKTRWWKRR 722 + +++++ +R Sbjct: 2491 EEEENQRSKYRNKR 2504 >gi|224098363|ref|XP_002199379.1| PREDICTED: ring finger protein 12 [Taeniopygia guttata] Length = 595 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 4/118 (3%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 D F +E S PS +++E D + Sbjct: 127 RTNPNSGDFRFSLEINVNRNNGNTNPETENEPSVEPSNGEDLENSQSDSEIPRSESPSVR 186 Query: 613 EDIQDNIVSEE---STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 + + +EE + +RR R R P S N + ++ Sbjct: 187 QPGSERSSAEELTAEEASPPRGQRRARSRSPE-QRRTRARTDRSRSPINAVSEAPRRS 243 >gi|195503574|ref|XP_002098707.1| Moca-cyp [Drosophila yakuba] gi|194184808|gb|EDW98419.1| Moca-cyp [Drosophila yakuba] Length = 970 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 34/145 (23%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 S + + QD S + ++ ++R R+R Sbjct: 601 RGSPSGDRRRQQRSRSQNRRQDSPGQRRQMSPGRKRQDSPGRKRPNSTERKRRDSLERKR 660 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + D + + D + + ++ P Sbjct: 661 DDSNDRKRESSANWKREDSPGRKRKDSANRKREDSQDKKIQDSHKQEDAAGKKRGDSPSK 720 Query: 699 TPEMESSNSSSDPIVKKTRWWKRRK 723 + P+ ++ +RRK Sbjct: 721 KRKDSDKKRQDSPVKRQESPGRRRK 745 >gi|163743212|ref|ZP_02150594.1| hypothetical protein RG210_14965 [Phaeobacter gallaeciensis 2.10] gi|161383629|gb|EDQ08016.1| hypothetical protein RG210_14965 [Phaeobacter gallaeciensis 2.10] Length = 227 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 33/152 (21%), Gaps = 1/152 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+G P N + P + + + L ++ + Sbjct: 65 ERGKPA-RRANGAAPTAPNGATPEQPADRAEADKLSSALAAAEAARRAAEAKAEKAVLKA 123 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ A V + + + HN + Sbjct: 124 KKSARKAAALAEEFAAAKVKAKAKAKRVKAKAKRAIEKEKAKAKAILEAKHNPKKEAPKK 183 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + D S + + PI KK Sbjct: 184 DSGKKDPSRKEPTKKVAAKRDGVKKPIAKKQG 215 >gi|332212432|ref|XP_003255323.1| PREDICTED: uncharacterized protein C10orf12-like [Nomascus leucogenys] Length = 1249 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 12/163 (7%), Positives = 35/163 (21%), Gaps = 1/163 (0%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 ++ + + + P + + Sbjct: 1083 PKAEVQSKRKRTEGSSPPDSKNKGPAVRASKEKHADGATKTPAAKRPAARDRSSQPPKKM 1142 Query: 621 SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 S + V ++ + P+ + SI + + + + Sbjct: 1143 SLKENKVKIPKKSAGKSCPPSRKEKENTHKRPSQSIASETLAKPAKQKGAGESS-SRPQK 1201 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + P TPE ++ K +R+ Sbjct: 1202 ATNRKQSNGKTRARPSTKTPESSAAQRKRKLKAKLDSSHSKRR 1244 >gi|242022019|ref|XP_002431439.1| ngd5/osm-6/ift52, putative [Pediculus humanus corporis] gi|212516727|gb|EEB18701.1| ngd5/osm-6/ift52, putative [Pediculus humanus corporis] Length = 646 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 11/181 (6%), Positives = 33/181 (18%), Gaps = 16/181 (8%) Query: 546 FGVSINVVIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 +++ + + + + + + Sbjct: 412 HDLAVELREDPNAEEKTPTQKRRPRRRREDPDAEEKTPTQKRRPRRRRGDPDAEEETPTQ 471 Query: 604 LPIPKSESLEDIQDNIVS------------EESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 P+ + + ++ ++RR +RRR D + Sbjct: 472 KRRPRRRREDPNAEEETPTQKRRPRRRRGDPDAEEKTPTQKRRPQRRRGDPDAEEETPTQ 531 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST--PEMESSNSSS 709 + D + + P P E + Sbjct: 532 KRRPRRRRGDPDAEEETPTQKRRPRRRRGDPDAEEETPTQKRRPQRRRGDPNAEEETPTQ 591 Query: 710 D 710 Sbjct: 592 K 592 >gi|169616732|ref|XP_001801781.1| hypothetical protein SNOG_11541 [Phaeosphaeria nodorum SN15] gi|160703251|gb|EAT81249.2| hypothetical protein SNOG_11541 [Phaeosphaeria nodorum SN15] Length = 483 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 62/240 (25%), Gaps = 14/240 (5%) Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 G I +++V L + + E + +T S + + K G Sbjct: 245 GAILEKNAVNLEVTKRWNELPDEEKEVRFSHNTGS-----MEDYKIELAEYLAKAGGKVA 299 Query: 551 NVVIGIELADKLF-------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL 603 +V I +L+D ++ + + V + S + + A Sbjct: 300 DVHIDEDLSDAEDVEMADVGTVDSDASSEDEEEPPVVVKAPSPPAKTPRPNKRQKTVAAA 359 Query: 604 LPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS 663 + R + ++ A D + + Sbjct: 360 ATNGAAVPSTPAPAKDTPVPIPSSSRPTTQVPAPVPASSVEAPAAAKKDSKKKAKLAAPA 419 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + T + + + + + E++ + + K+ R +RK Sbjct: 420 PIAPAPTKEATPDDTSKTAKKAKSSRSTRGAE--AEIDKENAAAGAGEKKKEKRDRSKRK 477 >gi|67538118|ref|XP_662833.1| hypothetical protein AN5229.2 [Aspergillus nidulans FGSC A4] gi|40743220|gb|EAA62410.1| hypothetical protein AN5229.2 [Aspergillus nidulans FGSC A4] gi|259484690|tpe|CBF81127.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4] Length = 883 Score = 38.8 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 9/151 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 KG+ + N + D+ ++E S D +N S G Sbjct: 338 KGARGRRRKNLEPTEEAAVTERDSDEPSATPVEEEVAADNDASRENLDSPENQPSGIDKG 397 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +KR R RR + + S + + ++ ++ Sbjct: 398 --KKRAGRPRRHIRSPTPSE-------DSAMSKRKRQHEKDLDRAETRPEQEQPAATARS 448 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 ++ S+P E P V+++R Sbjct: 449 SKKRKQHNEHESSPRQEQDEPGPQPEVERSR 479 >gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] Length = 792 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 37/166 (22%), Gaps = 14/166 (8%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E E R F +E+ Q + + A + Sbjct: 430 AEVEKR-------KAEHAKERHDFRLERLEREQQEKAEAMRRKKEEIARKKADANKAASS 482 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 D+ + SE K+R R A + ++ + Sbjct: 483 DKPEQDAIAAAVAR-------SEARKAEKAKQRAGTRTDNNAANDAKQAAIAAAKARAKA 535 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 + D ++ +E + S S + S Sbjct: 536 NTEGSDSAKSQAEAAKQAAIEAAKKRAQQQAQPSASDKSADDARKS 581 >gi|114582001|ref|XP_001157523.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 896 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + + E + + Sbjct: 706 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 751 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D S D + + +++R Sbjct: 752 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 811 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ + S D S M ++ + +NGA E Sbjct: 812 GERRNSFSENERHTHRNKDSENFRRKDRSKSREMNRKHSGSRSDEDRYQNGAERRWEKSS 871 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 872 RYSEQSRESKKNQDRRREKSPAKQK 896 >gi|3236351|gb|AAC32042.1| PRP4 protein kinase homolog [Mus musculus] Length = 823 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 33/149 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q V + I+ + + + S + + ++S Sbjct: 63 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 122 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ +R + + S S + Sbjct: 123 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 182 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 183 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 211 >gi|18859937|ref|NP_573229.1| CG8289 [Drosophila melanogaster] gi|7293368|gb|AAF48746.1| CG8289 [Drosophila melanogaster] gi|15292051|gb|AAK93294.1| LD36501p [Drosophila melanogaster] gi|220946046|gb|ACL85566.1| CG8289-PA [synthetic construct] gi|220955840|gb|ACL90463.1| CG8289-PA [synthetic construct] Length = 336 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 41/153 (26%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 V +A + + + + + D+ + S I+ Sbjct: 64 TSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDSDDDANHSDVDPSADSSPRKPNIK 123 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 ++ RR R + + + I S + N + + Sbjct: 124 RQTRRSVRGETEDSNELPSTSKASAHASSPIKKRKLSRASTSSVKNGKKVAEKDSESDVD 183 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P+ ++ S S P KK + RR Sbjct: 184 AGTEDEKSAQPQKVAAKSKSSPNAKKAKGRGRR 216 >gi|268564430|ref|XP_002639104.1| Hypothetical protein CBG14923 [Caenorhabditis briggsae] gi|187027557|emb|CAP33327.1| hypothetical protein CBG_14923 [Caenorhabditis briggsae AF16] Length = 1423 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 9/92 (9%), Positives = 20/92 (21%) Query: 596 CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSS 655 + + ++ + ES+G +RR+ R+R + S Sbjct: 304 EQKTSKRVKKEVENSPDYRTKKIKEEVESSGDEDQRRKESRKRARHDSESPVRNRRNSSE 363 Query: 656 IQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 E + Sbjct: 364 KPKTRRRHDSSEDERRSRSPVQKRRKSPEKNH 395 >gi|320581186|gb|EFW95407.1| hypothetical protein HPODL_2741 [Pichia angusta DL-1] Length = 494 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 37/145 (25%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 T K +S+A E ++ + + D+ ++ K Sbjct: 232 DSLASRTRRKSKDESRAKEVQPEEEAEAKEGVRTRRRVAMEPAEASDDEKDKQKEAEPEK 291 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 +RR R+P TD + + + + + Sbjct: 292 TPKRRVSRKPRTDEESESEEKEKAPQSGRKKRVKLKEEAAETEETMGVQSSSDEEEKKGT 351 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKK 715 V + + ++ + K+ Sbjct: 352 QTRRKSVREEKKPRTRTTRRNLKKE 376 >gi|310643858|ref|YP_003948616.1| hypothetical protein PPSC2_c4425 [Paenibacillus polymyxa SC2] gi|309248808|gb|ADO58375.1| hypothetical protein PPSC2_c4425 [Paenibacillus polymyxa SC2] Length = 287 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 32/145 (22%), Gaps = 11/145 (7%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 ++ S + PS + + + E E ++R Sbjct: 143 QQDSAATEESRVEQPSEAREPRELQRREPKDAQEVRERQPREARESRPSREGREGNRQRE 202 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R R+P S S + N N + Sbjct: 203 ARDSRQPREPREAKDGRS-----------SGEGQQAREPRRQRNPQGNFDKKESRGPRYD 251 Query: 694 IPPVSTPEMESSNSSSDPIVKKTRW 718 P E S +P ++ + Sbjct: 252 RQPKENREGRQVRVSREPEGQRQKN 276 >gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 683 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 2/112 (1%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS--ESLE 613 EL I + + S P A P P S + E Sbjct: 572 PELEIPDMPIIRRIKRARGQLEPAALTSPPVKPREPAEKAPAKARSAEAPRPVSAGPNAE 631 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + + + R +RRRRR GV ++ ++ + ++ D Sbjct: 632 PVVAASAPKTDSETAEARSAKRRRRRRKPTGEGRGVQAETETVSDQAPETVD 683 >gi|71019085|ref|XP_759773.1| hypothetical protein UM03626.1 [Ustilago maydis 521] gi|46099213|gb|EAK84446.1| hypothetical protein UM03626.1 [Ustilago maydis 521] Length = 773 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 14/166 (8%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 E + I++ + + H + D+ SE D Sbjct: 329 PEASTPDEKIKRSATSDDTKSEPH--------------DDDEGSDDERQEEDLSEPESDA 374 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + S R+ + R G +S + + D + Sbjct: 375 DVSKDSTHKRRSNRRGQDAIEPRTKIKRGEARGTAEALSDAEQTSKHAEDDADSVGENGR 434 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + +S TP S S + + TR +R Sbjct: 435 SERVPKRRGSRHAPTALSRTSRQTPASRKSTSGNVTPTQSTRRGRR 480 >gi|67904250|ref|XP_682381.1| hypothetical protein AN9112.2 [Aspergillus nidulans FGSC A4] gi|40742755|gb|EAA61945.1| hypothetical protein AN9112.2 [Aspergillus nidulans FGSC A4] Length = 917 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 26/270 (9%), Positives = 60/270 (22%), Gaps = 28/270 (10%) Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHT- 523 L ++ + T +R + LR E + + + Sbjct: 277 LSGEMDQVLEHLRTLLTNPSFVPLEEVEVRDEEIKR---LREGWEKMESRWRQAVTMMDG 333 Query: 524 -HSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 H + ++ E R G+ +N + + + + Sbjct: 334 WHKRIA-----HGGGSVRAEELRMGLKLNDHVDPRYSQ-------VRDNDVAMPSPIFED 381 Query: 583 SDSQAPSY-DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPA 641 + + Y ++ P P + ++T + R+ Sbjct: 382 QEDEEDEYFGVEATETEPNDDAEPAPDEPQETSSRALKERTDNTASAKHPPRKEVSFTEK 441 Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV--------- 692 + + ++ S + PS A Sbjct: 442 DRKSPSKKQQEDDTMPIKAHQSDAVTRRPSRKRVEPKGPRPAPTRMSVPQKLAAAESEAR 501 Query: 693 -SIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + E + S KKT +R Sbjct: 502 AAEKARQEQESRKRSRGSKVARKKTGDRRR 531 >gi|40714595|gb|AAR88555.1| LD10678p [Drosophila melanogaster] Length = 2558 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 18/188 (9%), Positives = 53/188 (28%), Gaps = 5/188 (2%) Query: 532 LNQKRATIVEYEARFGVSINVVIGI--ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 N+ ++ + E R + EL K ++K + ++ S Sbjct: 653 KNESGQSVAQTEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHEVP 712 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD--- 646 K + + + + Q + ++ + + ++ Sbjct: 713 EPKKATSDSKLDQSNQKNLDKKHKTDQSESKTNKNVSLAEPIKSNKQESEEQQATEQIGL 772 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 V S + + S D+ + + + + + +++ +T SS Sbjct: 773 KKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAVEESNTESRRSSI 832 Query: 707 SSSDPIVK 714 P+ + Sbjct: 833 IDKKPLEQ 840 >gi|47226837|emb|CAG06679.1| unnamed protein product [Tetraodon nigroviridis] Length = 933 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 40/172 (23%), Gaps = 9/172 (5%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQ-- 616 + ++ SP + + + + +DE K +D Sbjct: 221 SSPHRRSDRSSPSHRHSRGRERFRGERERSPPAQERRHDRRDETRSKREKDSIRDDRDYD 280 Query: 617 -------DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 D ++ +R R R R D D+ D + S + Sbjct: 281 SELLSSRDTRGERDTRESRDRRDARERGRETTRDSRDSRDAKDSRESRTDTRSSRESLGS 340 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + ++ D S + S ++ R Sbjct: 341 RERERERDREKDRERDKERERDRSDTQRKEDTAQEDRSYGRGHGREDTKTDR 392 >gi|26337239|dbj|BAC32304.1| unnamed protein product [Mus musculus] Length = 545 Score = 38.8 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 20/226 (8%), Positives = 65/226 (28%), Gaps = 8/226 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPEKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 V++NV + L ++ S KN + ++ + Sbjct: 172 VTVNVKKDK-VEKALKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENERE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + E + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFDMYME-PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNS 707 S + N + + +EN D + + + ++ + Sbjct: 291 SKRSDTPLKRPRLDKNSPQEQSKKRSENSDKDLSRRRSSRLSTNGT 336 >gi|115970763|ref|XP_001187475.1| PREDICTED: similar to PARD3 protein [Strongylocentrotus purpuratus] Length = 1510 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 8/223 (3%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R +E + + A H + + + A I E E + +S + + Sbjct: 980 ERLEQEEVERRKARQQAKQEHEKIQEEIQKLREAKIKE-ENQEALS---KADKMMQLRQQ 1035 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 Y ++ Q + D + + L ++E E + N E Sbjct: 1036 YQQRHLDNQGQYIDDGEEDEDDYTRVDPNSHQETMSQTQRLEAARAEQRERERQNSRVPE 1095 Query: 624 STGVIRKRRRRRRRRRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE- 680 R + RR+ D + D + N D Sbjct: 1096 RDRYERLPQEAEDRRKERRDDIYSEPKDRRDDRTSNNRYSDDPYADPRTLRNGQDQGRNY 1155 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK-TRWWKRR 722 + +G + DV P + + + +P + R R Sbjct: 1156 DDRYGRRNDRDVEENPYVRYNGKKDHGAQEPRDGRHDRNRDNR 1198 >gi|6979936|gb|AAF34661.1|AF221715_1 split ends long isoform [Drosophila melanogaster] Length = 5554 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%) Query: 77 DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 D Q R+ L+E + D+ ++ D+ E+ + ++ E Sbjct: 1991 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2048 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 + + +G ++ + + + + + Sbjct: 2049 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2108 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 G P+ + + SRK++ + K E G G+S Sbjct: 2109 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2164 Query: 257 TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 ++ E+ N R C Sbjct: 2165 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2224 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364 S + + DP + E +L S HQ + Sbjct: 2225 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2283 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419 + + + RE A TN + + R + Sbjct: 2284 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2343 Query: 420 -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 + + + + RSVE+ K S D L+ +S Sbjct: 2344 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2401 Query: 473 RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 + S C +++ ++ R EE + A + Sbjct: 2402 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2457 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583 + + E+E R + + S Sbjct: 2458 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2514 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638 D++ D D + + + SE+ + +R Sbjct: 2515 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2574 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R A+D + +I+ + ++ +++ H + + Sbjct: 2575 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2634 Query: 699 TPEMES 704 Sbjct: 2635 REIKTE 2640 >gi|317125572|ref|YP_004099684.1| transcription termination factor Rho [Intrasporangium calvum DSM 43043] gi|315589660|gb|ADU48957.1| transcription termination factor Rho [Intrasporangium calvum DSM 43043] Length = 728 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 3/126 (2%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 G P +A + P + + D P+ + E Sbjct: 145 GQPDRAQRAAEAVAAVSERQPLDRRAGDRPEADRPETDRPEVDRPEHEGRRQRERRDRRD 204 Query: 628 IRKRRRRRRRRRPATDHHD---AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 ++ R R + T + G + + Q+ + P T + E Sbjct: 205 RQQERDTRGNAQEPTSRQERNPRGANQERDTRQDARPERDPRGTSPERDTRDTIQERDGR 264 Query: 685 GFTENY 690 Sbjct: 265 QDARQE 270 >gi|24580579|ref|NP_722615.1| split ends, isoform A [Drosophila melanogaster] gi|46397733|sp|Q8SX83|SPEN_DROME RecName: Full=Protein split ends gi|10727421|gb|AAF51535.2| split ends, isoform A [Drosophila melanogaster] Length = 5560 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%) Query: 77 DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 D Q R+ L+E + D+ ++ D+ E+ + ++ E Sbjct: 1997 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2054 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 + + +G ++ + + + + + Sbjct: 2055 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2114 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 G P+ + + SRK++ + K E G G+S Sbjct: 2115 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2170 Query: 257 TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 ++ E+ N R C Sbjct: 2171 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2230 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364 S + + DP + E +L S HQ + Sbjct: 2231 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2289 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419 + + + RE A TN + + R + Sbjct: 2290 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2349 Query: 420 -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 + + + + RSVE+ K S D L+ +S Sbjct: 2350 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2407 Query: 473 RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 + S C +++ ++ R EE + A + Sbjct: 2408 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2463 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583 + + E+E R + + S Sbjct: 2464 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2520 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638 D++ D D + + + SE+ + +R Sbjct: 2521 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2580 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R A+D + +I+ + ++ +++ H + + Sbjct: 2581 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2640 Query: 699 TPEMES 704 Sbjct: 2641 REIKTE 2646 >gi|326673460|ref|XP_700327.4| PREDICTED: moesin [Danio rerio] Length = 577 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 48/156 (30%), Gaps = 6/156 (3%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 +A + ++ + + L K + + ++ E+ ++ + R Sbjct: 291 RRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLR 350 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + + + A + + + + + D ++ +EN Sbjct: 351 QIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTK 410 Query: 693 SIPPVSTPEMESSN------SSSDPIVKKTRWWKRR 722 + ++T E ++ + + R W+RR Sbjct: 411 NKDNLATELAELTSKINLLEDAKKKKEDEARKWQRR 446 >gi|194678116|ref|XP_870680.2| PREDICTED: ankyrin repeat domain 12 isoform 2 [Bos taurus] gi|297489734|ref|XP_002697789.1| PREDICTED: ankyrin repeat domain 12 isoform 1 [Bos taurus] gi|296473732|gb|DAA15847.1| ankyrin repeat domain 12 isoform 1 [Bos taurus] Length = 2027 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 5/172 (2%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKS 609 + + +++ + H V S + KN D Sbjct: 866 TIKKNDDRDKSREKMDRKHDKEKPEKERHPVESKEKHLMEKKNKPSDNSDYTKSEKSKNK 925 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 E ++ S +S + + + R+ TD + A +S + D+ Sbjct: 926 EKDREVDKKDKSRDSVNISNSKHFQEERKSSITDSNKAQHEKTLSLKEKTKDEPLRTPDG 985 Query: 670 PSDITNH----NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + P+ +SS +S D K+ R Sbjct: 986 KEKDKKDIDRYKERDKHKDKILSSSLKLKSEADKPKPKSSPASKDTRPKEKR 1037 >gi|153104|gb|AAA26676.1| protein A (ttg start codon) [Staphylococcus aureus] Length = 524 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 16/177 (9%), Positives = 41/177 (23%), Gaps = 2/177 (1%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ + K E A + + E + Sbjct: 294 EQRNGFIQSLKDDPSV-SKEILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGK 352 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + + ++P + + D + Sbjct: 353 EDNNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGN 412 Query: 663 SFDMYMEPSD-ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + N + G T N + ++ + N +D + K Sbjct: 413 KPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 469 >gi|170037615|ref|XP_001846652.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167880863|gb|EDS44246.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 538 Score = 38.8 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 39/160 (24%), Gaps = 6/160 (3%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K ++ V ++ S DK + + ES + + + Sbjct: 148 KERADRSPVRKRYEDSDASPPRRKDKERDKRDARKERRKYSSDESPPRRKSKSPARKRYS 207 Query: 627 VIRKRRRRRRRR------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 R+R + + + HD+ S N DS E Sbjct: 208 DSDPSPPRKRDKHWDEPSKGSRRGHDSDQSPPRKSRSNRRRDSDASPPRRRHDQVKIKQE 267 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + P + E +S P K R Sbjct: 268 RRDSDESPPRRGREIPQVRIKQEPPDSDESPPRKPNRRRD 307 >gi|293360021|ref|XP_001055856.2| PREDICTED: CWC22 spliceosome-associated protein homolog isoform 1 [Rattus norvegicus] Length = 876 Score = 38.8 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 14/155 (9%), Positives = 36/155 (23%), Gaps = 4/155 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + + + + ++ ++ S + E Sbjct: 722 QRHQEGRTERARSERHRAQNSRDADWRDPPAKHMEDRSHENSYSRVGNGREQGSHREPED 781 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN----HNLLEN 681 +++RR RR +++ + S D S + +N Sbjct: 782 RHGEPKKKRRERRDSFSENEKQRTRNQDSDNVRRKDRSKSRERSRKHSGRKGDDDDRYQN 841 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 GA E + K Sbjct: 842 GAERRWEKPSRYAEHSRESKRSQDRRREKSPTKHK 876 >gi|115893502|ref|XP_785679.2| PREDICTED: similar to PARD3 protein, partial [Strongylocentrotus purpuratus] Length = 1508 Score = 38.8 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 8/223 (3%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 R +E + + A H + + + A I E E + +S + + Sbjct: 978 ERLEQEEVERRKARQQAKQEHEKIQEEIQKLREAKIKE-ENQEALS---KADKMMQLRQQ 1033 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 Y ++ Q + D + + L ++E E + N E Sbjct: 1034 YQQRHLDNQGQYIDDGEEDEDDYTRVDPNSHQETMSQTQRLEAARAEQRERERQNSRVPE 1093 Query: 624 STGVIRKRRRRRRRRRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE- 680 R + RR+ D + D + N D Sbjct: 1094 RDRYERLPQEAEDRRKERRDDIYSEPKDRRDDRTSNNRYSDDPYADPRTLRNGQDQGRNY 1153 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK-TRWWKRR 722 + +G + DV P + + + +P + R R Sbjct: 1154 DDRYGRRNDRDVEENPYVRYNGKKDHGAQEPRDGRHDRNRDNR 1196 >gi|301622007|ref|XP_002940332.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Xenopus (Silurana) tropicalis] Length = 465 Score = 38.8 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 48/151 (31%), Gaps = 3/151 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + K + + + + + K++ ++ +D E+ Sbjct: 271 KEEERDTDKKFKTRKFEKENIKEDRCATGKKSDGEVGEEKTKKDKEYRDKDYREKDYRDK 330 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI--DDSFDMYMEPSDITNHNLLENGAHGF 686 R RR+R + + +H+ + + Y + D+ + Sbjct: 331 EYDRERRQRDKEKSRYHEDDRRKPRDRYEKDRCFRRREEDYRKERDLVKEKTRKQDVTES 390 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 ++ D S ++ E + ++ D I K R Sbjct: 391 PQSTDKS-ERIAREEKKEDSAKRDRIRNKDR 420 >gi|256820186|ref|YP_003141465.1| outer membrane chaperone Skp (OmpH) [Capnocytophaga ochracea DSM 7271] gi|256581769|gb|ACU92904.1| outer membrane chaperone Skp (OmpH) [Capnocytophaga ochracea DSM 7271] Length = 364 Score = 38.8 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 17/200 (8%), Positives = 50/200 (25%), Gaps = 2/200 (1%) Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L + + D+ L + E R E + E+ Sbjct: 167 LRALKKKDNAEDRNKDMAQLLK--ESYDFEFVEERVKKRKEAEKAREQRRVQYEQERLRK 224 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + ++ + + ++ + + +AL + E E +Q ++ R+ Sbjct: 225 TEEMKQQREQLKAKREKEQAERQQKFQQERDALKAQREKEQAERVQKFQQERDALKAQRE 284 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 + + R+++ D + +I E Sbjct: 285 KEQAERQQKFQQQRDSIKAQRDKEQTERQQKLQEQKEQREKEIAERQKKLEEQRVQREKE 344 Query: 691 DVSIPPVSTPEMESSNSSSD 710 + +++ Sbjct: 345 QAERLKKQQEARTQTPTTNQ 364 >gi|6467825|gb|AAF13218.1|AF188205_1 Spen RNP motif protein long isoform [Drosophila melanogaster] Length = 5533 Score = 38.8 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%) Query: 77 DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 D Q R+ L+E + D+ ++ D+ E+ + ++ E Sbjct: 1997 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2054 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 + + +G ++ + + + + + Sbjct: 2055 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2114 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 G P+ + + SRK++ + K E G G+S Sbjct: 2115 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2170 Query: 257 TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 ++ E+ N R C Sbjct: 2171 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2230 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364 S + + DP + E +L S HQ + Sbjct: 2231 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2289 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419 + + + RE A TN + + R + Sbjct: 2290 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2349 Query: 420 -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 + + + + RSVE+ K S D L+ +S Sbjct: 2350 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2407 Query: 473 RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 + S C +++ ++ R EE + A + Sbjct: 2408 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2463 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583 + + E+E R + + S Sbjct: 2464 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2520 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638 D++ D D + + + SE+ + +R Sbjct: 2521 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2580 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R A+D + +I+ + ++ +++ H + + Sbjct: 2581 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2640 Query: 699 TPEMES 704 Sbjct: 2641 REIKTE 2646 >gi|308507593|ref|XP_003115980.1| hypothetical protein CRE_09469 [Caenorhabditis remanei] gi|308250924|gb|EFO94876.1| hypothetical protein CRE_09469 [Caenorhabditis remanei] Length = 568 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 40/175 (22%), Gaps = 22/175 (12%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 GV I++ ++++ + + + D D + + D+ + Sbjct: 363 GVDIDLDSSDDMSESEDDMSESKDGSSESEDNMSESEDDMTEITDISSDGTSDDDEMANQ 422 Query: 607 PK----------------------SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 P S S + + + RRR R P + Sbjct: 423 PDFQGVNPGRQRSPQPQDRQNPATSHSPPPLNRRRPAPSRSPSPLNRRRPATSRSPQPQY 482 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 S N + +P N + S P Sbjct: 483 RQNPAPSRSPLPLNRRRPATSRSPQPQYRQNPAPSRSPPPLHRRRAAPSRSPSPQ 537 >gi|189242212|ref|XP_967555.2| PREDICTED: similar to rCG61344 [Tribolium castaneum] Length = 952 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 50/197 (25%), Gaps = 25/197 (12%) Query: 534 QKRATIVEYEARFGVSINVVIG----IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPS 589 R+ + E R +S+ + ++D K N Sbjct: 21 HLRSHLDRIERRTALSLRPISQKCYADSMSDTELRRSKRQRKVQFENMSWLADDQMHKMG 80 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR----------------RR 633 Y + +E P E + S + R+ R Sbjct: 81 YPNLNTPGYSEEDSRDAPDVRLEEPSRSTRHSNDVNSGKRREIKSPKYLYNYETNDVPPR 140 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 RRR + + ++N + + E ++I + + +E Sbjct: 141 RRRS-----EITSRSSERNQKELRNRRESNDKENNEETNINGRSSHSRSSKRTSEAAGED 195 Query: 694 IPPVSTPEMESSNSSSD 710 S +E ++ S Sbjct: 196 SEKKSDDTVEDDSNDSK 212 >gi|218264756|ref|ZP_03478468.1| hypothetical protein PRABACTJOHN_04177 [Parabacteroides johnsonii DSM 18315] gi|218221805|gb|EEC94455.1| hypothetical protein PRABACTJOHN_04177 [Parabacteroides johnsonii DSM 18315] Length = 995 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 4/198 (2%) Query: 517 HNIIVHTHSDVVLYLLNQKRATIVE-YEARFGVSINVVIGIELADKLFYIEKGSPVQALV 575 ++ + +K + I F I I+L +++ Sbjct: 63 ERVVPERPHREASSVKEEKSSEIKTVIPEEFKPKIVTKGRIDLDRSHKKVQEVQHQPVSA 122 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQD--EALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 KV +A S K E Q+ P+ + E + E + + Sbjct: 123 PVEKKVEKPVEATSATKTAEAPVQEVKAPEAKAPEVKEPEAKMPEVKVPEVKQQPEEIKE 182 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + + + V + +S + EP+ + E T ++ Sbjct: 183 EKVIVVEK-EPAEVIKPEPVQEPKAANVESTTVTAEPAAPAGNGSEEELFRLNTPKFESK 241 Query: 694 IPPVSTPEMESSNSSSDP 711 I ++ + N S+ P Sbjct: 242 IKVTGKIDLNALNQSTRP 259 >gi|195014701|ref|XP_001984064.1| GH15212 [Drosophila grimshawi] gi|193897546|gb|EDV96412.1| GH15212 [Drosophila grimshawi] Length = 1192 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 50/188 (26%), Gaps = 13/188 (6%) Query: 524 HSDVVLYLLNQKRATIVEYE-ARFGVSINV-------VIGIELADKLFYIEKGSPVQALV 575 H + ++R E R + + + + ++ V+ Sbjct: 826 HVGRARRIDEEERTLRRRQEDEREAFKLKIAEQRKKREEEAQSSRDQLLAKRQEYVEKTK 885 Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 N + ++ + D+ + ++ +++ +++ Sbjct: 886 NLLIIADAPTERERKKGSGRPRK-DDYITGTDSADGEPREGAERPAKKKRSKGERKKGSG 944 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 R+R+ SD S D+ + N + VS Sbjct: 945 RKRK----SEKYESDSDEESAGGNRDNKSKQKKKKQQQKNAKESKEKLSAKQRLKIVSKE 1000 Query: 696 PVSTPEME 703 +ST E E Sbjct: 1001 TISTSESE 1008 >gi|195049195|ref|XP_001992669.1| GH24882 [Drosophila grimshawi] gi|193893510|gb|EDV92376.1| GH24882 [Drosophila grimshawi] Length = 6469 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 3/158 (1%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + + E+ S + +S A + + L Sbjct: 1366 IKDDHEKHESVKDERLSETPRRESVADSTKPESLKDDKSLPASKEASRPASVADSVKDKL 1425 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 E + R+ R + D A +VS + + D +P Sbjct: 1426 EKHLGEQDDRSADPSRRESVADRSKPESLKDDKSAPPSKEVSRPASAAESVKDESEKPEV 1485 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 +T+ + E E+ I P S + +S + S + Sbjct: 1486 VTDAHSKEPSRR---ESVAEIIKPESVKDDKSESVSKE 1520 >gi|24580581|ref|NP_524718.2| split ends, isoform B [Drosophila melanogaster] gi|10727420|gb|AAF51534.2| split ends, isoform B [Drosophila melanogaster] Length = 5533 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%) Query: 77 DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 D Q R+ L+E + D+ ++ D+ E+ + ++ E Sbjct: 1997 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 2054 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 + + +G ++ + + + + + Sbjct: 2055 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2114 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 G P+ + + SRK++ + K E G G+S Sbjct: 2115 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2170 Query: 257 TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 ++ E+ N R C Sbjct: 2171 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2230 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364 S + + DP + E +L S HQ + Sbjct: 2231 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2289 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419 + + + RE A TN + + R + Sbjct: 2290 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2349 Query: 420 -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 + + + + RSVE+ K S D L+ +S Sbjct: 2350 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2407 Query: 473 RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 + S C +++ ++ R EE + A + Sbjct: 2408 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2463 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583 + + E+E R + + S Sbjct: 2464 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2520 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638 D++ D D + + + SE+ + +R Sbjct: 2521 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2580 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R A+D + +I+ + ++ +++ H + + Sbjct: 2581 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2640 Query: 699 TPEMES 704 Sbjct: 2641 REIKTE 2646 >gi|291243503|ref|XP_002741641.1| PREDICTED: serine/threonine-protein kinase PRP4h-like [Saccoglossus kowalevskii] Length = 908 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 32/148 (21%), Gaps = 2/148 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + H + ++ + + + + S Sbjct: 191 IAAKHKRSRNRHSRSPSVERRRSKRSQSPRDKKHSRHRSASPRHKIRKRSKSPRKRSKSP 250 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R R R R R P S +N S P + L T Sbjct: 251 KRNRSPRMRSRSPRKRSKSPKRRSKSPKRENRRRKSRSRSKSPIKKRPRSPLR--QPMQT 308 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ES + S P ++ Sbjct: 309 TRQSPPRISPARRMSESPRNISTPQLQN 336 >gi|224013546|ref|XP_002296437.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968789|gb|EED87133.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 584 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 17/178 (9%), Positives = 43/178 (24%), Gaps = 10/178 (5%) Query: 551 NVVIGIELADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 + E+ + G D + + D Sbjct: 55 RIKAEEAKRRLEEADERYQAKVRERERAEGRGGSDDEEEGALDVGRTKASARGDDAMQQP 114 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 ++ +D + E+ R+++R + + D +A + + ++ Sbjct: 115 HDNEDDSEHVDSDEDEETKRRRKKRAQEISQLRKDVTEAREARNQKEAERQVEKQKAEAK 174 Query: 669 EP----SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD----PIVKKTRW 718 E + D E ++ ++ P +KK R Sbjct: 175 RRELMGEVQAKQKEAEKESKKRHRESDEEEDHDDIEEDTTTLPAASVLTGPTIKKKRV 232 >gi|195111454|ref|XP_002000293.1| GI22604 [Drosophila mojavensis] gi|193916887|gb|EDW15754.1| GI22604 [Drosophila mojavensis] Length = 639 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 50/220 (22%), Gaps = 17/220 (7%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 A + + ++ + + +KR+ E + L + + Sbjct: 122 KASTVKIKQEPELPIKIKLEKRSNSRELSPTRRSPLR----EHLYSDQSPTRRRRSDEEK 177 Query: 575 VNTGHKVGSDSQAPSYDKNIE---CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 N + S + + +D+ P +D + +R Sbjct: 178 PNKRERNVDQSPPRRRKNDDQSPPRRRRDDQSPPRRIKGDDDDQSPPRNRRDDNQSPPRR 237 Query: 632 RRRRR------RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++R RR DH Q+ F+ P Sbjct: 238 KKRDNHDKSPPSRRRDDDHSPPRRKKRDDDDQSPPRRRFNADQSPPRRRKDADKSPPRRV 297 Query: 686 FTENYDVSIPPVS----TPEMESSNSSSDPIVKKTRWWKR 721 + P + S P +++ Sbjct: 298 RNTDQSPPRRRRDSDQSPPRRRKDSDQSPPRKRRSSDQSP 337 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 35/162 (21%), Gaps = 7/162 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + K D Q+P + KS + Sbjct: 250 RRRDDDHSPPRRKKRDDDDQSPPRRRFNADQSPPRRRKDADKSPPRRVRNTDQSPPRRRR 309 Query: 627 VIRKRRRRRRR-------RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 + RRR+ R+ + + S D+ + + Sbjct: 310 DSDQSPPRRRKDSDQSPPRKRRSSDQSPPIKRRDSDQSPPRRRQADLKQHKNRRDSDQSP 369 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 ++ S +S +K+RW K Sbjct: 370 PRQKRNSDQSPPRRRRSGSRDRSRASPGRIKKEERKSRWAKE 411 >gi|197102158|ref|NP_001125780.1| pre-mRNA-splicing factor CWC22 homolog [Pongo abelii] gi|75041856|sp|Q5RA93|CWC22_PONAB RecName: Full=Pre-mRNA-splicing factor CWC22 homolog; AltName: Full=Nucampholin homolog gi|55729161|emb|CAH91317.1| hypothetical protein [Pongo abelii] Length = 908 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + + E + + Sbjct: 718 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 763 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D S D + + +++R Sbjct: 764 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 823 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ + S D S M ++ + +NGA E Sbjct: 824 GERRNSFSENEKHTHRNKDSENFRRKDRSKSREMNRRHSGSRSDEDRYQNGAERRWEKSS 883 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 884 RYSEQSRESKKNQDRRREKSPAKQK 908 >gi|332358015|gb|EGJ35848.1| translation initiation factor IF2 [Streptococcus sanguinis SK1056] Length = 932 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 5/182 (2%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R E +V ++ L + + + + R S + + Sbjct: 5 RLYEIAKELGKESKEVVARAKELGLDVKSHSSSVEADAGERIKSSFTKAAAPQATAEKPA 64 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + SP + ++ E + A + P+S + + ++ EE+ Sbjct: 65 VAQPSPQKTPAKEVAPAKAEQTEAKVTAKPEAKAETAAPVKRPQSRNFKAEREARAKEEA 124 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 RR+++ R+P D + + D P+D ++ + + Sbjct: 125 E-----RRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRN 179 Query: 685 GF 686 G Sbjct: 180 GQ 181 >gi|315225611|ref|ZP_07867420.1| OmpH family outer membrane protein [Capnocytophaga ochracea F0287] gi|314944428|gb|EFS96468.1| OmpH family outer membrane protein [Capnocytophaga ochracea F0287] Length = 346 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 52/181 (28%), Gaps = 4/181 (2%) Query: 511 LLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSP 570 L + + D+ L + E R E + E+ Sbjct: 167 LRALKKKDNAEDRNKDMAQLLK--ESYDFEFVEERVKKRKEAEKAREQRRVQYEQERLRK 224 Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE--STGVI 628 + + ++ + + ++ + + +AL + E E +Q + Sbjct: 225 TEEMKQQREQLKAKREKEQAERQQKFQQERDALKAQREKEQAERVQKFQQERDALKAQRE 284 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +++ R+++ + D A + + Q +++ + E T Sbjct: 285 KEQAERQQKFQQQRDSIKAQRDKEQAERQKKLEEQTVQREKEQAERLKKQQEAKTQTPTT 344 Query: 689 N 689 N Sbjct: 345 N 345 >gi|194769021|ref|XP_001966606.1| GF22263 [Drosophila ananassae] gi|190617370|gb|EDV32894.1| GF22263 [Drosophila ananassae] Length = 3115 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 10/154 (6%), Positives = 38/154 (24%), Gaps = 1/154 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P +P + + +++ + + ++ Sbjct: 1598 EPATESEPEKDSEPETKASPK-KSTVSVTKTETERRNSRTTKAKQPVAPKESPSKAPQPK 1656 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R+ R+ + + + ++ + + + + T Sbjct: 1657 SPRKDSLNDRKRDSLVEETRTTTTTTTATTRPGRKPSDSNIKDRLRSSPRKQKTSPQPTR 1716 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + V ++ ++S D + +RR Sbjct: 1717 TPTPAQARVPEDNVDGDSTSPDVSPSRVSTERRR 1750 >gi|149410656|ref|XP_001505258.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 2362 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 17/248 (6%) Query: 485 TYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQ------KRAT 538 CK + +S AL I E+ +I + L++ + + Sbjct: 16 ESCKKKYHSEEESKEALKINEHSEKLPTSKEPKHIHAKSEPSKPARRLSESLHTTDENRS 75 Query: 539 IVEYEARFGVSINV-----VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + E + ++ + +E+ + + + P D N Sbjct: 76 ESKTEREHRRRASTSLEGAQPDPDIKEAKRQMERPEINPEETQKPKSILKNEKHPKKDNN 135 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 + +P + S + + + + K + + D + Sbjct: 136 DSEMH--LRSIPKKELRSYREKSEKERTLSEDKLSTKHKYKGDSVHKIGDETELH----P 189 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 S + D+S + +++ + + + E + E++ + + + Sbjct: 190 SERNSKADESGQKQSQQIKVSSDDKADKKSKHRNEKKIPVLTKDGKTVSENTLKTEESLR 249 Query: 714 KKTRWWKR 721 K+ R Sbjct: 250 KENSKKDR 257 >gi|24580583|ref|NP_722616.1| split ends, isoform C [Drosophila melanogaster] gi|6715140|gb|AAF26299.1|AF184612_1 split ends [Drosophila melanogaster] gi|22945598|gb|AAN10511.1| split ends, isoform C [Drosophila melanogaster] Length = 5476 Score = 38.8 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 68/666 (10%), Positives = 150/666 (22%), Gaps = 54/666 (8%) Query: 77 DYYQIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEE 136 D Q R+ L+E + D+ ++ D+ E+ + ++ E Sbjct: 1940 DKEQKEKEIREKDLREKEQRERDNRE--KELRDKDLREKEMREKEQREKELHREKDQRER 1997 Query: 137 SIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAV 196 + + +G ++ + + + + + Sbjct: 1998 EHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKENAMDTIA 2057 Query: 197 TTYLSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASR 256 G P+ + + SRK++ + K E G G+S Sbjct: 2058 Q---GTPGASPS-TPSDNTPKERSRKLSRNSPVRLHKRRLSSQESNHSAGGGGSCGGSSH 2113 Query: 257 TKIEIK----------RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKD 306 ++ E+ N R C Sbjct: 2114 QIHHEDYVKRIRMENSQNISVHSSNQRLNDRRDSKEHKSSSFKEDKNSSSHISRPHGCGG 2173 Query: 307 ISEIIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFR--SGIEVQLDSLHQTEVT 364 S + + DP + E +L S HQ + Sbjct: 2174 SSASSSKHHHRRDKHHQKGSASSIETNSSIEVVVDPISQTKHNLNTSEEELQS-HQPKRE 2232 Query: 365 LPSRGYVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDL----- 419 + + + RE A TN + + R + Sbjct: 2233 KEREHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRRISAAGS 2292 Query: 420 -------AGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGLLEMSRQRI 472 + + + + RSVE+ K S D L+ +S Sbjct: 2293 GSAGELSSAATNTSSGKLHHQHHRRSVER--KSSRGSDEGHHSSSKSLRAKLMMLSSADS 2350 Query: 473 RSSVLESTTK-------VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHS 525 + S C +++ ++ R EE + A + Sbjct: 2351 DDTDDASKKHSIFDIPDDCPNVSMYDKVKA--RSCKNMQRQAEEK--KIKAKFSQLKQSR 2406 Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGS 583 + + E+E R + + S Sbjct: 2407 AKKKRSTSYDGDSDTEFEDRQHRN---SGSSSFHGRYPGLSSSDDDDDEETHQRRISSDS 2463 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR-----RRRRRRR 638 D++ D D + + + SE+ + +R Sbjct: 2464 DAEHGGQDNQGASTLADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNST 2523 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 R A+D + +I+ + ++ +++ H + + Sbjct: 2524 RIASDSESQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTE 2583 Query: 699 TPEMES 704 Sbjct: 2584 REIKTE 2589 >gi|198465678|ref|XP_002135021.1| GA23474 [Drosophila pseudoobscura pseudoobscura] gi|198150268|gb|EDY73648.1| GA23474 [Drosophila pseudoobscura pseudoobscura] Length = 1099 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 13/141 (9%), Positives = 32/141 (22%), Gaps = 3/141 (2%) Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + + ++ + + +S E ++ R + R R Sbjct: 386 RPNESSADGRRDKRERSDSRSRRPKSNERGATTRTPPRKEPERKRERSKERFRSKERQRS 445 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE---M 702 S S + + + ++ S + E Sbjct: 446 KERQRSKERLRSKERQRSKERQRSKERPKSKERQRSRERQRSKERIRSKERQRSKERQRS 505 Query: 703 ESSNSSSDPIVKKTRWWKRRK 723 + S D K R + + Sbjct: 506 KERQKSKDRQRSKDRQRSKDR 526 Score = 38.0 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 33/148 (22%), Gaps = 3/148 (2%) Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 + S DK + + + + + R + R+R Sbjct: 385 KRPNESSADGRRDKRERSDSRSRRPKSNERGATTRTPPRKEPERKRERSKERFRSKERQR 444 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 + S S + + + ++ S Sbjct: 445 SKERQRSKERLRSKERQRSKERQRSKERPKSKERQRSRERQRSKERIRSKERQRSKERQR 504 Query: 699 TPEMESSNS---SSDPIVKKTRWWKRRK 723 + E + S S D K R + + Sbjct: 505 SKERQKSKDRQRSKDRQRSKDRQRSKER 532 >gi|189242426|ref|XP_969950.2| PREDICTED: similar to CG10984 CG10984-PC [Tribolium castaneum] Length = 762 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 57/244 (23%), Gaps = 32/244 (13%) Query: 483 VCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEY 542 G+I+ L + R + + + V YL N + E Sbjct: 97 PLHDAAMNGHIKLVK---LLVERGADIHAKNSKGKTPLDVATPAVTPYLHNP-SLPLPES 152 Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 A V V ++ E Q K D K E + + Sbjct: 153 TASTRVQPRVRDDKKVTS-----ETTKTKQDETMDTTKTTEDVYEFKSVKESEQTQEQKT 207 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIR----------------KRRRRRRRRRPATDHHD 646 SE E E +R++R+ + + Sbjct: 208 DAQESTSEQSEPTSTPATQTEENSKRNFSEIADSNDEVNDDESRRKKRK-------EEGN 260 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + N + G G ++ S P ST + E + Sbjct: 261 KDGKTPTQRNTNQAKGQSGKQGVAAQGKQTQAAAAGKTGEKKSPCSSPKPASTSDAEVED 320 Query: 707 SSSD 710 SD Sbjct: 321 GKSD 324 >gi|156052901|ref|XP_001592377.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980] gi|154704396|gb|EDO04135.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1505 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 23/205 (11%), Positives = 60/205 (29%), Gaps = 10/205 (4%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQA 573 A +V + + +E V I++ + K + Sbjct: 957 ENAEEHQTEVPEGMVA---DGGEDFLRSFE-YTDVKIDLEWDDIIPKDQLEGIKAEEEKR 1012 Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 + AP + ++ A + + + + +D EE + Sbjct: 1013 AHEEYLAKVVEENAP-----RKAAMKNTAEVEREQRLAKKRERDQAKQEELEEKREAQAN 1067 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI-TNHNLLENGAHGFTENYDV 692 R +RP + ++ ++ D ++ E + + +++ TE Sbjct: 1068 RLDPKRPLNEKETRNLMKAYLRYGSMEDRGEELVKEARLVGRDEEMMKATLKALTEESSR 1127 Query: 693 SIPPVSTPEMESSNSSSDPIVKKTR 717 + + +++ P+ KK R Sbjct: 1128 RLKEENERVEALERATNKPLTKKDR 1152 >gi|284991446|ref|YP_003410000.1| hypothetical protein Gobs_3019 [Geodermatophilus obscurus DSM 43160] gi|284064691|gb|ADB75629.1| conserved hypothetical protein [Geodermatophilus obscurus DSM 43160] Length = 658 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 14/158 (8%), Positives = 34/158 (21%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + ++ + ++ D + D + + Sbjct: 124 DRPAAGRSDWRDRRPSADRGRDDRPGRDDRRPQGDRPAVGRSDWRDRRPSADRGRDDRAG 183 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+ + R R D AG E Sbjct: 184 QDDRRPQGERPARGSWQDRRSAGERPQGERPARGSWQDRRSAGERPQGERPARGSWQDRR 243 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P + + ++ P ++T W R + Sbjct: 244 SAGERPQGERPARSTWQDRRSAGERPQGEQTGWRDRPR 281 >gi|169869605|ref|XP_001841364.1| hypothetical protein CC1G_12562 [Coprinopsis cinerea okayama7#130] gi|116497574|gb|EAU80469.1| hypothetical protein CC1G_12562 [Coprinopsis cinerea okayama7#130] Length = 369 Score = 38.8 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 2/158 (1%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 IE+ +P Q ++ +E ++ + + + Sbjct: 214 IEQETPPQRPPEDRYQGRRTRSRSQAQDALEEGASEDDSDQPSSFQGIRTRRQRREDAHP 273 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R R R+ A + V + S T + Sbjct: 274 KSTDERSRTTRNRQTAANPENAKPVGKRKDYPVPL--TSPSKRPRVEASTQSKSSSHKKT 331 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 T + P + ++N + + K R RR Sbjct: 332 SQTSKREAPPPRTPKRQKPAANGRKEAVTPKKRVAGRR 369 >gi|302838362|ref|XP_002950739.1| hypothetical protein VOLCADRAFT_104851 [Volvox carteri f. nagariensis] gi|300263856|gb|EFJ48054.1| hypothetical protein VOLCADRAFT_104851 [Volvox carteri f. nagariensis] Length = 865 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 33/138 (23%), Gaps = 6/138 (4%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE-ALLPIPKSESLEDIQDNIVS 621 F +K + N + +++ P E + + Sbjct: 332 FVDKKKDDTEQGGNAAAAETPAGAEEVAPVQVPRQQEEQNPANPPTSDEGDGTAAEMGEN 391 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R++ R R+PA AG + + + Sbjct: 392 PTTEEGEEVERKKPRGRKPAGSRQSAGCRKRKEPP-----PTEAGAEQAKTSRRRRGSTD 446 Query: 682 GAHGFTENYDVSIPPVST 699 G + D PV T Sbjct: 447 PRIGKSGCVDEEPKPVRT 464 >gi|302504256|ref|XP_003014087.1| PE repeat family protein [Arthroderma benhamiae CBS 112371] gi|291177654|gb|EFE33447.1| PE repeat family protein [Arthroderma benhamiae CBS 112371] Length = 1102 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 42/157 (26%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK K + + P+ + + + E +V E+ Sbjct: 613 EKPQDDSPPAEDVVKEAAPPEQPAAEPVAKEEPVSSPTEELKTIEEPTPQPAPVVEEKPA 672 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 I++ + P ++ + + + + + + + + + + Sbjct: 673 EDIKEEPVPQAVEAPVSEDTASKPIIEEPAAVEDAPNHKAAEEAAVESKSKSRSKERSKE 732 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ S P E S KK + R Sbjct: 733 RSKEKRHKKHRRSAPAEEPPRPSKSSGEKKPSSRRPR 769 >gi|2425109|gb|AAB70838.1| choline binding protein A [Streptococcus pneumoniae] Length = 663 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 15/183 (8%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 + E R I + V +A + Sbjct: 282 QKEEDRRN-----YPTNTYKTLDLEI---AESDVKVKEAELELVKEEAKEPRDEEKIKQA 333 Query: 600 D-EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + ++ LE+I+ + E + + + +PA A Sbjct: 334 KAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPATQPEKPAPK 393 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E +D E +E + P+ E + P KT W Sbjct: 394 PEKPAEQPKAEKTD---DQQAEEDYARRSEEEYNRLTQQQPPKTEKP---AQPSTPKTGW 447 Query: 719 WKR 721 + Sbjct: 448 KQE 450 >gi|70950739|ref|XP_744668.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56524714|emb|CAH78120.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 1546 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 20/220 (9%), Positives = 63/220 (28%), Gaps = 22/220 (10%) Query: 496 QSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIG 555 + A + R+ E + + ++ + N+ + E Sbjct: 24 VENDANNEKRNDVEENKEQKNEDNEKLSNIEENKEQKNEDNEKLSNIE------------ 71 Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 E + + + + D + ++ +E L +I Sbjct: 72 ----------ENKEQKNEGNEKLSNIEENKEQKNEDNEKQNNIEENKEQKNEDNEKLSNI 121 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 ++N + + + ++ + + + ++ N +E +D N Sbjct: 122 EENKEQKNEDNEKQNNIEENKEQKNEDNEKNTIEEKNTNTTINTSSVQVTNDVENNDCKN 181 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 +L + ++ P+ + S++S + + K Sbjct: 182 IHLNSTDKNRSNIEDSANLTPIEKKQEISNSSKREDNLNK 221 >gi|170068143|ref|XP_001868751.1| rhomboid [Culex quinquefasciatus] gi|167864260|gb|EDS27643.1| rhomboid [Culex quinquefasciatus] Length = 2375 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 32/294 (10%), Positives = 80/294 (27%), Gaps = 17/294 (5%) Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 + ++ K+SL R++ + S+ G + + R R +E G + S Sbjct: 132 LLRRAKKSLTGSRSKPKTDDSSDGGKVSDTEVRKRRERIERYQSERGKNTSTGEAGAGDS 191 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL----NQKRATIVEYEARFGVSINVVI 554 A + L E ++ + + + + R ++E E R + + + Sbjct: 192 PAATNLSRFNEERRKFELEKLKFLQEKRELDRMRLRRFEKYREELLE-EQRKKLQVELRN 250 Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-----CVWQDEALLPIPKS 609 E+ ++A V S + + Sbjct: 251 RE-------RDERSKSIEAPVLPPIPPTRSKTPVSPGPTKKLLLVVPKTSSASASSSEDE 303 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + ++ ++ +R + + +S + + D E Sbjct: 304 ADHNTSDEEKMATIRRRFSPRKPKRPKSGKAEPVRQLPRTPELATSPEPESELPSDFPPE 363 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + T+ ++ E + P + KK + +K Sbjct: 364 AEEPTSPEVVVVEPVVEQEVIPEKVEPEMVLTQRKVVKQDEKEDKKDGVVEEKK 417 >gi|156406783|ref|XP_001641224.1| predicted protein [Nematostella vectensis] gi|156228362|gb|EDO49161.1| predicted protein [Nematostella vectensis] Length = 956 Score = 38.8 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 12/144 (8%), Positives = 36/144 (25%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + + ++ ++E L + + E+ + + Sbjct: 394 ERKRKEADDRQREAARKEEEEKRKREGEVKKRKEEEERLVEARRKEQEEKRKLEEQKRKE 453 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+R+ +R + +N + + + N + Sbjct: 454 EEDRRRKEAEEKRIKEEEARLKEERRSKDEEENRRKADEERKRKEQEEAERNRVVQEEKR 513 Query: 686 FTENYDVSIPPVSTPEMESSNSSS 709 E S + E + Sbjct: 514 KIEQEGKQRKKESRKQEEQNKKEQ 537 >gi|323451008|gb|EGB06887.1| hypothetical protein AURANDRAFT_65285 [Aureococcus anophagefferens] Length = 2320 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 12/138 (8%), Positives = 32/138 (23%), Gaps = 3/138 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ P + Q + E + + + E L + Sbjct: 948 ERSKPAP---GESRVAVARHQNLLKEVERERRTVERLVKATQRLEELLRDATAAAERRAA 1004 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +RR++ + + D+ E + E + Sbjct: 1005 ADSERRRKKAAKEAETLAKRAEREADAEARRDKRSKDAATRKAERDEDAKQRRAEKDSEL 1064 Query: 686 FTENYDVSIPPVSTPEME 703 + ++ + + E Sbjct: 1065 AAAAANRALAEMKRKQAE 1082 >gi|302926991|ref|XP_003054405.1| hypothetical protein NECHADRAFT_98872 [Nectria haematococca mpVI 77-13-4] gi|256735346|gb|EEU48692.1| hypothetical protein NECHADRAFT_98872 [Nectria haematococca mpVI 77-13-4] Length = 2265 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 45/165 (27%), Gaps = 4/165 (2%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALLPIPKSES 611 IE V A T P ++E + + IP +ES Sbjct: 668 EPAPVDQQPEQDIEMTDAVVASKATPEPPAQPEHEPEAPASVEKPKEPLAETVDIPMAES 727 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 ++E + + ++ + P ++ + +P Sbjct: 728 DPTPVAPEPAKEPSEKLIEKPIEKPTEMPIEKPNEKPSEQLDEKPSEK-AIEEEPVEKPV 786 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + +++ + T P E + + VK++ Sbjct: 787 EKPDEMIIDKTSE--TTAEATVEKPADKTIEEPHEEAPEQPVKES 829 >gi|237835353|ref|XP_002366974.1| hypothetical protein TGME49_045440 [Toxoplasma gondii ME49] gi|211964638|gb|EEA99833.1| hypothetical protein TGME49_045440 [Toxoplasma gondii ME49] gi|221506351|gb|EEE31986.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 504 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 56/227 (24%), Gaps = 8/227 (3%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI------VEYEARFGV 548 + R ++ + N++R E + Sbjct: 153 GAEMGERCVRRGEQQGEKSENDDQDNGKVDRERGKQGANREREEEITAKYEREIQKGTSK 212 Query: 549 SINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE-CVWQDEALLPIP 607 +I ++ +K + G D+ + + + Sbjct: 213 TIKRIVTERERQTSEKEQKSKDCERGSKDGETGKEKDYEMLEDRTADGDKAEGKTESEGT 272 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 ES ++ + S + + R+R +R R ++ G S+ + Sbjct: 273 GLESEDESEPYSKSFKKEEQKKGRKRDKRNREQGSERSKTGDEQRGSASGPEEEYGQGAE 332 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + D T +E + N + S + VK Sbjct: 333 AKMKDRTKERRIEQEEDKDS-NARKRQKQSRKDQHSGGVSGKEGKVK 378 >gi|114661626|ref|XP_001164058.1| PREDICTED: hypothetical protein LOC744733 isoform 7 [Pan troglodytes] Length = 1792 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1058 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1059 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150 >gi|114661628|ref|XP_001164014.1| PREDICTED: hypothetical protein LOC744733 isoform 6 [Pan troglodytes] Length = 1792 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1058 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1059 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150 >gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] Length = 799 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 6/128 (4%) Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 A I + + E++ KR+R RR + ATD D ++ + Sbjct: 588 AAREIETAPKAPVAAEKPEREKAEREKPKRKRGGRRTKGATDGADTAPTAETLAATTEGT 647 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP------EMESSNSSSDPIVKK 715 D+ E +D A + D + P E + ++ K+ Sbjct: 648 DALAATSEGTDALAATTEGTDAVAEPLSDDAAPMVAEAPGAEPVVEAPTVAEAAPEKPKR 707 Query: 716 TRWWKRRK 723 R R+K Sbjct: 708 KRAAPRKK 715 >gi|33620769|ref|NP_008841.2| E3 ubiquitin-protein ligase RBBP6 isoform 1 [Homo sapiens] gi|74762440|sp|Q7Z6E9|RBBP6_HUMAN RecName: Full=E3 ubiquitin-protein ligase RBBP6; AltName: Full=Proliferation potential-related protein; AltName: Full=Protein P2P-R; AltName: Full=Retinoblastoma-binding Q protein 1; Short=RBQ-1; AltName: Full=Retinoblastoma-binding protein 6; AltName: Full=p53-associated cellular protein of testis gi|31711501|dbj|BAC77636.1| retinoblastoma binding protein 6 isoform 1 [Homo sapiens] gi|119576195|gb|EAW55791.1| retinoblastoma binding protein 6, isoform CRA_c [Homo sapiens] gi|225000778|gb|AAI72357.1| Retinoblastoma binding protein 6 [synthetic construct] Length = 1792 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1058 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1059 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150 >gi|296219792|ref|XP_002756021.1| PREDICTED: retinoblastoma-binding protein 6-like isoform 2 [Callithrix jacchus] Length = 1759 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 14/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E + K + + E+S Sbjct: 968 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NVVKPAKGPQEKVDGEREKSPRSEPP 1024 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1025 LKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116 >gi|296219790|ref|XP_002756020.1| PREDICTED: retinoblastoma-binding protein 6-like isoform 1 [Callithrix jacchus] Length = 1793 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 14/152 (9%), Positives = 38/152 (25%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E + K + + E+S Sbjct: 1002 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NVVKPAKGPQEKVDGEREKSPRSEPP 1058 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1059 LKKAKEETPKTDNAKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1150 >gi|149045217|gb|EDL98303.1| rCG43985 [Rattus norvegicus] Length = 1007 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 33/149 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q V + I+ + + + S + + ++S Sbjct: 247 RRSQEKVGKARSPADEKIKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ +R + + S S + Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKQRDKSRRS 366 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395 >gi|114661630|ref|XP_001164099.1| PREDICTED: retinoblastoma-binding protein 6 isoform 8 [Pan troglodytes] Length = 1758 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 968 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1024 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1025 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116 >gi|114661632|ref|XP_001163940.1| PREDICTED: retinoblastoma-binding protein 6 isoform 4 [Pan troglodytes] gi|114661634|ref|XP_001164141.1| PREDICTED: retinoblastoma-binding protein 6 isoform 9 [Pan troglodytes] Length = 1758 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 968 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1024 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1025 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116 >gi|58865416|ref|NP_001011923.1| serine/threonine-protein kinase PRP4 homolog [Rattus norvegicus] gi|81883388|sp|Q5RKH1|PRP4B_RAT RecName: Full=Serine/threonine-protein kinase PRP4 homolog; AltName: Full=PRP4 pre-mRNA-processing factor 4 homolog gi|55715685|gb|AAH85927.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Rattus norvegicus] Length = 1007 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 33/149 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q V + I+ + + + S + + ++S Sbjct: 247 RRSQEKVGKARSPADEKIKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ +R + + S S + Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKQRDKSRRS 366 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395 >gi|33620716|ref|NP_061173.1| E3 ubiquitin-protein ligase RBBP6 isoform 2 [Homo sapiens] gi|31711503|dbj|BAC77637.1| retinoblastoma binding protein 6 isoform 2 [Homo sapiens] gi|119576196|gb|EAW55792.1| retinoblastoma binding protein 6, isoform CRA_d [Homo sapiens] Length = 1758 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 968 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 1024 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 1025 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 1116 >gi|327459327|gb|EGF05673.1| translation initiation factor IF2 [Streptococcus sanguinis SK1] Length = 930 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 6/124 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + V + E P K+E+ ++ Sbjct: 58 ATAEKPVAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKAETAAPVKRPQSRNFKAERE 117 Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + RR+++ R+P D + + D P+D ++ + Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177 Query: 683 AHGF 686 +G Sbjct: 178 RNGQ 181 >gi|317182308|dbj|BAJ60092.1| 30S ribosomal protein S1 [Helicobacter pylori F57] Length = 552 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 61/247 (24%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSAGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVVTLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDKKISLSTKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|116194812|ref|XP_001223218.1| hypothetical protein CHGG_04004 [Chaetomium globosum CBS 148.51] gi|88179917|gb|EAQ87385.1| hypothetical protein CHGG_04004 [Chaetomium globosum CBS 148.51] Length = 1052 Score = 38.4 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 37/157 (23%), Gaps = 1/157 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + P I + + L E SE Sbjct: 124 RRRAKDQARAARAGSIDATAPPPSPPTIRPTIEMD-GLEFEAESVEEQSNGEEGSEYEDL 182 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + +RRR R+PA D + + + + E + Sbjct: 183 DEPQTKRRRAPRKPAPKDSRKRARDDEEAEARSEKERKERDARLRLERSAEAGEARSRRS 242 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E E ++ + ++RK Sbjct: 243 QKLAEEKAERERKAEEERKVEEQRKAEQERKAEQQRK 279 >gi|301783279|ref|XP_002927053.1| PREDICTED: myosin-11-like isoform 1 [Ailuropoda melanoleuca] Length = 1979 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 73/242 (30%), Gaps = 19/242 (7%) Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 G +E R+R + ++ + S + R +E + Sbjct: 1757 GNMETMSDRVRKATQQAEQLNNELATERSAAQKNESARQQLERQNKELRSKLQ------- 1809 Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 ++ + ++ ++TI EA+ + ++ + + A Sbjct: 1810 ---EMEGAVKSKFKSTIAALEAKIA-----QLEEQVEQE----AREKQAAAKSLKQKDKK 1857 Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 + + Q + ++ + + +EE + I RR+ +R Sbjct: 1858 LKEMLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEA 1917 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 + + +V+++++ + + P+ + + A G E D + + Sbjct: 1918 TESNEAMGREVTALKSKLRRGNETSFVPARRSAGRRVIENADGSEEEVDARDADFNGTKA 1977 Query: 703 ES 704 Sbjct: 1978 SE 1979 >gi|297812707|ref|XP_002874237.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320074|gb|EFH50496.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 948 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 39/178 (21%), Gaps = 5/178 (2%) Query: 550 INVVIGIE-LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 I E L + + + Y + +E A K Sbjct: 768 ITFKADDEDLKGNDCVRAQPDNGMDEEQRQKRRRIEVALIEYRETLEEEGMKNAEEIERK 827 Query: 609 SESLEDIQDNIVSEESTGVIRKRRR----RRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 E + + + ++ R+ R + + + S S Sbjct: 828 VEINRKRLEVDYGLSKSNEGNRNQKSIIERKETREGSQESSKKRHRGENQSQSPPRKSST 887 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 D+ E ++ D ++ R W+RR Sbjct: 888 RERERDHDLERDRDRERHRDRDRQHDLNRDRDRREKSSSHDRDDHDRSKERDRDWRRR 945 >gi|240140668|ref|YP_002965148.1| hypothetical protein MexAM1_META1p4234 [Methylobacterium extorquens AM1] gi|240010645|gb|ACS41871.1| conserved hypothetical protein with putative pseudouridine synthase-like domain [Methylobacterium extorquens AM1] Length = 669 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 13/172 (7%), Positives = 27/172 (15%), Gaps = 14/172 (8%) Query: 565 IEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+ P + H+ + +D P + D + Sbjct: 392 VERLQPSPEKPAPEPHRRVRFRNEEERSAPRDRAREDRPRQDRPGQDRPRDDRPRSEGPR 451 Query: 624 STGVIRKRR-------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 +R R RRR + E Sbjct: 452 ENRARDERPGRDEFRRGAPAGDARPRRREAGEAAPAERRGPPRERPSDFEGRPPRERSEG 511 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + R Sbjct: 512 RPQRDFHGDSRERGEGAPRRERPSEGRPPERRGPPRDRPRAAEGERPARPPR 563 >gi|194758591|ref|XP_001961545.1| GF14881 [Drosophila ananassae] gi|190615242|gb|EDV30766.1| GF14881 [Drosophila ananassae] Length = 833 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 13/163 (7%), Positives = 38/163 (23%), Gaps = 2/163 (1%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 + + K + V + + + + + + P + + Sbjct: 410 PSASAAQPQVPKSVEEKKEVPLPIATPAALPDSADSQPKTPLQKPKLESPPKTAPESQSP 469 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN 675 + + + ++ P T+ A + +S E + Sbjct: 470 PTQPAEKSKQVPSSAQEQAKQATSPTTESVKAPAPASGPVSGPPSKESSKPDAEAKKKSP 529 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + + + + +P S P KK Sbjct: 530 PSPAKKESPPPAKKESPPPAKKDSPPPAKKES--PPPAKKDST 570 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 13/168 (7%), Positives = 30/168 (17%), Gaps = 13/168 (7%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN------IECVWQDEALLPIP 607 + ++K +Q K + Sbjct: 440 PDSADSQPKTPLQKPKLESPPKTAPESQSPPTQPAEKSKQVPSSAQEQAKQATSPTTESV 499 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 K+ + + + + +++ PA + Sbjct: 500 KAPAPASGPVSGPPSKESSKPDAEAKKKSPPSPAKKESPPPAKKESPPPAKKDSPPPAKK 559 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 P + + PP + S P KK Sbjct: 560 ESPPPAKKDST-------PPVKKESPPPPAKIESPLPAKKESPPPAKK 600 >gi|326923172|ref|XP_003207814.1| PREDICTED: telomere-associated protein RIF1-like [Meleagris gallopavo] Length = 2304 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 6/142 (4%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + + S + + +EA K E + S Sbjct: 1466 SEYAVKKESGLPERSAAEALGSKEPSAPKGADEEANRSARKPEDALKSDTDSQDCSSDTA 1525 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 K+R R R + +SSI+N D + E + Sbjct: 1526 GEKKRERPRYHTRRS------SQGLLSSIENAEADGSETKKESLKKRSGKTKNKSDSLEG 1579 Query: 688 ENYDVSIPPVSTPEMESSNSSS 709 + DV + S + S Sbjct: 1580 KWKDVQLESQSHEVSSQVDESK 1601 >gi|326664877|ref|XP_003197902.1| PREDICTED: hypothetical protein LOC100537884 [Danio rerio] Length = 517 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 8/167 (4%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 EK T + ++ P + + S + Sbjct: 265 KAEKNEKADKPEKTNKEKEEKKNDGEKVNKTVKTEKNVTAAKTPAKSPTANGSKEVTSPD 324 Query: 624 STGVIRKRRRRRRRRRPAT--DHHDAGVVSDVSSIQNVIDDSFDM------YMEPSDITN 675 S ++ RP + AG S N + + + Sbjct: 325 SKTKPSAASTKQSSARPNSLSTGDSAGATKRTSPTTNSANKKSPIPKATTPTAGSKKTPS 384 Query: 676 HNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + T PPV + S+++S + T RR Sbjct: 385 STVENKAKSSETVTASQRRPPVPKAKAASASNSKNGTSAPTTTSARR 431 >gi|307168061|gb|EFN61372.1| hypothetical protein EAG_06707 [Camponotus floridanus] Length = 1202 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 79/298 (26%), Gaps = 49/298 (16%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 R+R + + T + + + IL + NI T + Y Sbjct: 598 RLRPPIPKLTNSPILSR----KVAATKVLNSPILERSKLLTKSSETKNIGYFTCVENSPY 653 Query: 531 LLNQKRATIVEYEAR--FGVSINVVIGIELA-DKLFY----IEKGSPVQALVNTGHKVGS 583 +L + +T +E F I++ L F I++ S ++ N + Sbjct: 654 MLRKSNSTTNYHERTSYFDKDISIKAPNMLQNSPEFQRHLNIQRSSSNASIRNIRSQNFV 713 Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS---------------------- 621 ++ +I+ + S S Q Sbjct: 714 SRRSSFNSNDIDRISSRGKFAVASDSSSETGEQQRKSPLTPISSGIKLNRAFSIRRARLN 773 Query: 622 --EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++T RRRR + A + S N + + S+ T Sbjct: 774 CESDTTPNTTPEERRRRAQSEVKTATPANKQNYHRSRTNSVGAHNKESSKKSEPTKFKTP 833 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR--------------WWKRRK 723 + P + + +N S KK+ WKRRK Sbjct: 834 SISRTDTGRFSMRAPKPNHSSNSQKTNQKSSKDHKKSGRSNSTLTSKEVEFQNWKRRK 891 >gi|134287217|ref|YP_001110913.1| hypothetical protein HVAV3e_gp060 [Heliothis virescens ascovirus 3e] gi|133722125|gb|ABO37247.1| hypothetical protein [Heliothis virescens ascovirus 3e] Length = 597 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 14/159 (8%), Positives = 34/159 (21%), Gaps = 9/159 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + A + + + T Sbjct: 249 RSPKRTRRSPVRRSPSPRPYTATSVTRKYRRIKTPARSRSRSRSNSVGRRRTTAVKSRTK 308 Query: 627 VIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 +R R R R + P + S S + + Sbjct: 309 SPARRQSVARSRSRSKSPVRKTTRSRTKSPARRQSVARSRSRTKSPARRQSVARSRSRSK 368 Query: 683 AHGFTENYDVSIPPVSTP-----EMESSNSSSDPIVKKT 716 + ++ S +P +S + S P +++ Sbjct: 369 SPARRQSVARSRSRSKSPARRQSVAKSRSRSKSPARRQS 407 >gi|125582752|gb|EAZ23683.1| hypothetical protein OsJ_07385 [Oryza sativa Japonica Group] Length = 1070 Score = 38.4 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 19/224 (8%), Positives = 61/224 (27%), Gaps = 9/224 (4%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 R+ + L+ A+ + D+ +K+ +R + N+ Sbjct: 32 RNGDDEEKKYSHHDMKNNLRNDANEEKRKSSDDMRDGDFEEKKKC-----SRHDMKKNLR 86 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + ++ + K + + + + + + + Sbjct: 87 NDAN----EEKRKSSDDMRDGDDEEKKCSRQDMKKNLRNDADEEKRKSSDDMRDGDDEEK 142 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + ++++ +R+R+R+ + D + V + D + Sbjct: 143 KKRSRHDMKKNSRNDADEEKRKRKRKCSDDLKKSVVNDASKEATSHSDWRKNRKAGSDAE 202 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 L NG + +++ +S+ K + Sbjct: 203 QRGKKLLNGDKKAKSRKVTTPFFEKMRKIKMQRTSNQNGEKNMK 246 >gi|309363134|emb|CAP27132.2| hypothetical protein CBG_06908 [Caenorhabditis briggsae AF16] Length = 480 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 40/150 (26%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + + + + + ++ ++ E Sbjct: 97 RNSEDDDEDYVYEDEKPAKKRRKDEARRAMAVKQKQAAEDQRRKAEAAAEERQKKAEEKR 156 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + RR RR+ AT + + + D + + LE Sbjct: 157 LEKNRRDAERRKNEATKRAIQQQQQQAAMLAAQEREQKDQTAKRLSLMEMGELEMQGMPI 216 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ P STP+ + + ++ Sbjct: 217 VDDKKKRKRPESTPKRQPRVRQNSEDDQEV 246 >gi|302510407|ref|XP_003017155.1| hypothetical protein ARB_04031 [Arthroderma benhamiae CBS 112371] gi|291180726|gb|EFE36510.1| hypothetical protein ARB_04031 [Arthroderma benhamiae CBS 112371] Length = 1020 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 7/178 (3%) Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-----APSYDKNIECVWQD 600 G +++ +A E+ + Q+ + + Sbjct: 21 NGKRPDIIGDANVAVPRLTPEQNAQGQSDLYKSKWATPVDEYQTAWEKILAGKGGPSASQ 80 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR--RPATDHHDAGVVSDVSSIQN 658 +P + S Q +++ T ++ + ++R +P+T D + + Sbjct: 81 ITQAAVPAATSGAKQQPPTSTDKPTAGKQESKGKQRATTQQPSTSPQKIDRADDGHNKPS 140 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 S + + + + D PP T + +S P + Sbjct: 141 SQKGSSGKTLSANPPKPASTDKKNMAVGEGPSDSRRPPPVTSQQSQPATSLPPASEND 198 >gi|283767855|ref|ZP_06340770.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp. aureus H19] gi|283461734|gb|EFC08818.1| immunoglobulin G-binding protein A [Staphylococcus aureus subsp. aureus H19] Length = 465 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 18/188 (9%), Positives = 33/188 (17%), Gaps = 14/188 (7%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-------------APS 589 E R G ++ E A + Q Sbjct: 178 EQRNGFIQSLKDDPS-QSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEE 236 Query: 590 YDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGV 649 +D+ + + + D +E + + + Sbjct: 237 QRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKPGKEDNKPGKEDGNKPGKEDG 296 Query: 650 VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 N D + G +N + P E N Sbjct: 297 NKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPG 356 Query: 710 DPIVKKTR 717 KK Sbjct: 357 KEDNKKPG 364 >gi|219670756|ref|YP_002461191.1| hypothetical protein Dhaf_4760 [Desulfitobacterium hafniense DCB-2] gi|219541016|gb|ACL22755.1| hypothetical protein Dhaf_4760 [Desulfitobacterium hafniense DCB-2] Length = 450 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 6/195 (3%) Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIE----KGSPVQALVNTGHKVGSDSQAPSY 590 + + E R + I ++ IE K + + S Sbjct: 229 EPKDLKAKEERARLLETPEIQEQMRKDKLIIEAMSNKTNQGEGKDKKEGYGKSKWYNLDR 288 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 +KN + +++ I + +D + +++ + R + + + R Sbjct: 289 EKNNQKSTKEQPRNSIGNPKPSQDSNKSSNKDDNKNSNKDRSKDKDKDRDYGSGTKGKGT 348 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV--SIPPVSTPEMESSNSS 708 ++ D+ D + +N E V S S + E + + Sbjct: 349 DKGDDLEKGQDNRSDRTDNQGNSDRNNDQNTDKEKRGEKKGVPDSEQKQSPKQAEPAEKA 408 Query: 709 SDPIVKKTRWWKRRK 723 + T+ RK Sbjct: 409 GKRDNQDTKQNSNRK 423 >gi|13346457|gb|AAK19748.1|AF348207_1 C2H2 zinc finger protein [Homo sapiens] Length = 639 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|332016541|gb|EGI57422.1| Serine/threonine-protein kinase PRP4-like protein [Acromyrmex echinatior] Length = 940 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 41/157 (26%), Gaps = 2/157 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK + + S + ++ E +DE+ + + + E Sbjct: 189 EKIRSKEEGKREEIRRDDRSSRKTSERQKEETRKDESNRKVGDDDQQRRKDLSRRDETWK 248 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 +R R+R + HH + ++ S N D + H + + Sbjct: 249 KESDRRE--ENRKREQSSHHSSKTNNETKSSDNKSRDRLASRERQNSRDRHISHDRRSRD 306 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + S + RR Sbjct: 307 RLSSREPRRHASRDKRDSKSKDRYGNRDRHDGSRDRR 343 >gi|322789836|gb|EFZ14983.1| hypothetical protein SINV_06718 [Solenopsis invicta] Length = 885 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 9/155 (5%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 PV+ ++ + D K+ ++ ++ SE+ ++ I Sbjct: 142 SRPVKQVIEVAKRFDDDITKKDNIKSEIVQAANDNVVQQEISETPKETSGEIDRPVEARK 201 Query: 628 IRKRRRRRRRRRPAT--DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 I +R +R+ + R D+ V + S + S + T+ E Sbjct: 202 IERRLKRKSKERVEKYCRSTDSSDVDEKSELNRRRTKSPEAMRSRVKKTSGRSREYDPES 261 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + S E +SS + + R + Sbjct: 262 QKRDTERS-------NREKRSSSRQKLEDEPRIRE 289 >gi|260796013|ref|XP_002592999.1| hypothetical protein BRAFLDRAFT_65583 [Branchiostoma floridae] gi|229278223|gb|EEN49010.1| hypothetical protein BRAFLDRAFT_65583 [Branchiostoma floridae] Length = 2327 Score = 38.4 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 37/170 (21%), Gaps = 6/170 (3%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA------LLPIPKSESLE 613 + P + Q + + + + PK E Sbjct: 827 SPENEKKATEPAKDEPAKPKPAKESDQPKDEQQPSKETEKPKEQPKPFKETEKPKEEPKS 886 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 +E + + + P T D + + S + PS Sbjct: 887 TKVTEQPKDEPATTKPAKETEQPKNEPTTSKPDTPNKKAAETRPVIEKPSEEKAAPPSPK 946 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + S E + + + K + R+K Sbjct: 947 PKSTKEKKTPKTPSPKVRKSSKSKDPTEEPTKKKTKEKKPAKEKTKSRKK 996 >gi|320542598|ref|NP_001189208.1| CG42795, isoform A [Drosophila melanogaster] gi|318068752|gb|ADV37299.1| CG42795, isoform A [Drosophila melanogaster] Length = 3189 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 6/183 (3%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + E + V + + + + + + + Sbjct: 1183 ELEDRFNALERKMSVQKSSPSKNKKEPPD----EEESKSTKEPEEPEESEKANEKTSGRQ 1238 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 +D KSE+ E+ +E V + + +++ + + Sbjct: 1239 TPIAKKDSKDSDQKKSETKENQSPTKNQDEKVKVKSPKSEEMIEKETSSNPKEDS--HES 1296 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + N + A G + + S Sbjct: 1297 EAATNKKVEGNRELSSEKGDHKIKEKSEEAPGKAGKETAETKNANVKDSSKKGDSQKNEA 1356 Query: 714 KKT 716 KT Sbjct: 1357 AKT 1359 >gi|308509248|ref|XP_003116807.1| CRE-LET-858 protein [Caenorhabditis remanei] gi|308241721|gb|EFO85673.1| CRE-LET-858 protein [Caenorhabditis remanei] Length = 916 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 5/163 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK ++ S++ S ++ E + + + + Sbjct: 19 EKDEAATEQPDSPKSGSEKSRSASPRESRESSPESKRSGRSDDEDDDKQPATPPSDRSRE 78 Query: 626 GVIRKRRRRRRRRRPAT-----DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLE 680 +R R R + + + + P + Sbjct: 79 ASPEPKRHRESRSSSPSRSPAPARQRSPIRQKSPVRRRSPAREKSPEPAPKPSDEKKKND 138 Query: 681 NGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + T IPP M+ + + W+R K Sbjct: 139 SKDLLRTRTGGAYIPPAKLRLMQQQITDKSSEQYQRMNWERMK 181 >gi|297839843|ref|XP_002887803.1| hypothetical protein ARALYDRAFT_895889 [Arabidopsis lyrata subsp. lyrata] gi|297333644|gb|EFH64062.1| hypothetical protein ARALYDRAFT_895889 [Arabidopsis lyrata subsp. lyrata] Length = 897 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 49/239 (20%), Gaps = 18/239 (7%) Query: 492 YIRSQSSVALSILRSVEE----YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 +R R E + + ++ ++ E G Sbjct: 43 RVRVSDDEDHKSSRRDLEIGGGERRRGDKVRKETSSDEELSRRSRKDRKEVNSGSEDDRG 102 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 I + + KG + + K V D Sbjct: 103 KKIEAGSDADGER---RVSKGKNKDRVRADTSSDEEADDSKGNKKETMEVEDDYGRSGRR 159 Query: 608 KSESLEDIQDNIVS---------EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 +S + + S + S ++R R RR D D + Sbjct: 160 RSPKVMEKHGRERSHRGSRVIADKPSDEEDDRQRSRGGRRESERKRRDHRASDDDEEGEI 219 Query: 659 VIDDSFDMYMEPSDIT--NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + + + E EN + D ++ Sbjct: 220 RSERKGKERNDRGNEGLLKRDRRERDLTDGHENGSRRREVERKDRSRRDDGVRDEKERR 278 >gi|255994455|ref|ZP_05427590.1| hypothetical protein GCWU000322_00534 [Eubacterium saphenum ATCC 49989] gi|255993168|gb|EEU03257.1| hypothetical protein GCWU000322_00534 [Eubacterium saphenum ATCC 49989] Length = 1155 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 11/178 (6%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW---- 598 E + +I +V + + +E V + + + D I+ Sbjct: 796 ENKVKNNIKIVGNSKELREKVLVETEVNVTKKIEETREYKEEVAEDEKDFVIDEDQLLIS 855 Query: 599 -----QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG--VVS 651 +++A + K E E V ES + ++ ++ V Sbjct: 856 DKKEPEEQAETVVEKEEKPEPEVTEEVKPESDAEQEAKSESEIAKKANSEPETKSETNVE 915 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + + D+ + EP N + + + +++ + Sbjct: 916 AEITRETEKDEDDKLVDEPVPSKNDKFEIENSDDSEDKETAGMEAEEDTQVKEHDKKK 973 >gi|195395382|ref|XP_002056315.1| GJ10883 [Drosophila virilis] gi|194143024|gb|EDW59427.1| GJ10883 [Drosophila virilis] Length = 1315 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 1/157 (0%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K S L + D + + DE + + D + + Sbjct: 267 KMSTDSELEQASTSKRNRRDKTGSDNDSDYKEADEPAESEQEKQENSDSDAEDGEDAQSS 326 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R+RR + + S ++ + S + + + Sbjct: 327 ASEVMPQRKRRNFGSKKDAGSAQDSSDFEPEDKKKKKRRRIKKNSSGDSDDGDDEKNKNK 386 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + I +M + ++ + ++ R +R+K Sbjct: 387 -RKHIRKIIKTKDLDMTTKEAAKEEEDRRKRIEERQK 422 >gi|47575780|ref|NP_001001234.1| peptidylprolyl isomerase G [Xenopus (Silurana) tropicalis] gi|45708892|gb|AAH67931.1| peptidyl-prolyl isomerase G (cyclophilin G) [Xenopus (Silurana) tropicalis] Length = 736 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 38/155 (24%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 HK S + D E +SE + ++N S + + Sbjct: 407 SQKGDREKQKDHKSASKERDLKKDAEKEERPNKSRSSKRTRSERRSESKENSKSNKDSKH 466 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + R + + S + + S + S + Sbjct: 467 SKHDVKARSKSKERAHEKGKEKNSSDKAKEKDRSKSRERVKHSSSKNERAKSKEREKTRE 526 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + ++S K+R RR Sbjct: 527 RQGKSRSRERESARTKHGSNSRAKERSKSRENSRR 561 >gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114] gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114] Length = 500 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 8/166 (4%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G +I+ V E A +LF IE+ + ++ P + + + P Sbjct: 341 GKAISFVSEDE-AKELFAIERLIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKPK 399 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 +D Q + ++ ++ ++PAT + + D Sbjct: 400 APRVEHKDGQRSG-----ENRNGNKQGAKQGQKPATKR--TPTNNPSGKKEGTDSDKKKR 452 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 T G + P + + P Sbjct: 453 PFSGKPKTKGTGENRGNGSNFGKSKSTPKSDVKPRRQGPRPARKPK 498 >gi|268564626|ref|XP_002639167.1| C. briggsae CBR-HSR-9 protein [Caenorhabditis briggsae] gi|187035948|emb|CAP24554.1| CBR-HSR-9 protein [Caenorhabditis briggsae AF16] Length = 1165 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 18/175 (10%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + +G + + + + +++ ++E P P +E + D + Sbjct: 357 VRRGRSAKTANSAEQESEVSETPKTPERSRRSTGKNED--PEPVAEDIVDGDQPEAATPK 414 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 G KR + +T D + + S ++ + Sbjct: 415 RGGRGKRSMPSTQTPRSTRGRGKKADVDEDENNQSAIPNDKESEDGSSTRTPRTRKSTSR 474 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV----------------KKTRWWKRRK 723 E V V+ E +SS K+T R+K Sbjct: 475 AAVEQEAVDEAEVAETESSEPTTSSRRSTRAKAPAKATPATPATNKRTPARGRKK 529 >gi|91977457|ref|YP_570116.1| hypothetical protein RPD_2989 [Rhodopseudomonas palustris BisB5] gi|91683913|gb|ABE40215.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 373 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 35/159 (22%), Gaps = 13/159 (8%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 + I G+ K + V + A E+ +Q Sbjct: 82 YLISNGATDTRYKQNDAKSEPGQPEGRQGRRQRPVAGEAARPEAAAPEAGAPVQAEEGV- 140 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL---- 678 RR R +R+P + + + E + Sbjct: 141 --------RRSRNSKRQPKPEADKPAEGAAAAETAAPAPAEQPPAKERRKHGRKDKPGQA 192 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 GA P + P + +++ K Sbjct: 193 APAGADAAKGEPQKPSPAATEPAVAKPDTTKPDSAKPDG 231 >gi|195999462|ref|XP_002109599.1| hypothetical protein TRIADDRAFT_53787 [Trichoplax adhaerens] gi|190587723|gb|EDV27765.1| hypothetical protein TRIADDRAFT_53787 [Trichoplax adhaerens] Length = 1866 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 22/251 (8%), Positives = 72/251 (28%), Gaps = 6/251 (2%) Query: 473 RSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLL 532 R + G+ R + R++ + + + + DV YL Sbjct: 436 RKRLQSVDEDDIQLPLDQGWRRQTRLR--RVGRNLRGDVYYFAPCGKKLRIYPDVTKYLR 493 Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 + + E + + ++ ++ P+ + + ++ + Sbjct: 494 KNSISDLN-LENFSFSTKLYIGDFQIYNEDSG--TFEPMDEDELHRRRQEASTKKNQKLE 550 Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + + + L + E + ++ ++ ++ R + A + A + Sbjct: 551 KLRKRDERKRLAAEKAKKMQEAKLQRKMEKQRAAADKREEKKERAIKAAMERKAARDQAK 610 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + ++ + + + L++ + + E Sbjct: 611 MEKLREKMAR-HEKIKQEKKKKKEALIQARNKKKEDAEKKRYQEALQRQKERELKKQQAK 669 Query: 713 VKKTRWWKRRK 723 + KT+ +RRK Sbjct: 670 ILKTKEKERRK 680 >gi|261333815|emb|CBH16810.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei gambiense DAL972] Length = 2849 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 67/645 (10%), Positives = 176/645 (27%), Gaps = 32/645 (4%) Query: 80 QIPFSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESII 139 Q P D + + + T E + + + S E I+ E + Sbjct: 1595 QEPTKDSEKQEESRASSATRDEISQEPSKESEKQEESRASSESPDEISQ------EPTKE 1648 Query: 140 SANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTY 199 S + + ++ K+ ++Q + R + + KE + + ++ Sbjct: 1649 SEKQEESRASSETPDEISQEPTKESEKQEESRASSATRDEISQEPSKESEKQEESRASSA 1708 Query: 200 LSLAGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKI 259 P + + ++ + +E + E T + Sbjct: 1709 TRD---ELSQEPTKESEKQEESRASSASRDEISQEPTKESEKQEESRASSATRDEISQEP 1765 Query: 260 EIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYR 319 + + + R R+ +E + A RD ++ S+ E+ Sbjct: 1766 SKESEKQEESRASSATRDEISQEPTKESEKQEESRASSATRDEISQEPSKESEKQEESRA 1825 Query: 320 EAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEAL 379 + ++ +Q E R I + + + + ++ Sbjct: 1826 SSATRDEISQEPSKESEKQEESRASSATRDEISQEPSKESEKQEESRASSATRDESSQEP 1885 Query: 380 VSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSV 439 S + T +++ E +E +Q R + + K++ + Sbjct: 1886 SK---ESEKQEESRASSATPDESSQEPTKESEKQEESRP-SSATRDEISQEPSKESEKQE 1941 Query: 440 EKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSV 499 E + + + +++ E SR ++ E + + + R+ S+ Sbjct: 1942 ESRASSATGDESSQMSTKESEK---QEESRP-SSATRDEISQEPTKESEKQEESRASSAT 1997 Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV-IGIEL 558 + + + T + + E + + Sbjct: 1998 GDESSQEPTKESEKQEESRPSSATRDESSQVSSKES-------EKQEESRVYSESPDESS 2050 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + EK + D + K E + P S E +++ Sbjct: 2051 QEPSKESEKQE-----ESRASSATRDESSQEPSKESEKQEESRVSSESPDESSQEPTKES 2105 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 EES ++ ++ + V S ++ + S + + + Sbjct: 2106 EKQEESRASSATGDESSQKPSKESEKQEESRVYSESPDESSQEPSKESEKQEDSRPSSAT 2165 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + ++ + S ES + SS K++ + + Sbjct: 2166 RDESSQEPSKESEKQEE--SRVYSESPDESSQEPTKESEKQEESR 2208 >gi|221481108|gb|EEE19516.1| AT hook motif-containing protein, putative [Toxoplasma gondii GT1] Length = 3768 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 11/149 (7%), Positives = 40/149 (26%), Gaps = 1/149 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + + S+ + + +E+ + ++ Q+ + Sbjct: 409 DASGDAREGAPLPEQGDSEKEGAEKKARQQPGRTEESRGKRENARGEDEQQEEAEKKRGK 468 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDS-FDMYMEPSDITNHNLLENGAH 684 ++++ RRP + + V ++ ++ E ++ Sbjct: 469 KEDLRKKKVSSVRRPDEEKEETEVDVVMTDANEAEREAVHAERRESAESGEGAEAREEKK 528 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV 713 E + + + E + S Sbjct: 529 RRVEGREPAKLEEAVGEARETQSDGRREE 557 >gi|237836993|ref|XP_002367794.1| hypothetical protein TGME49_005630 [Toxoplasma gondii ME49] gi|211965458|gb|EEB00654.1| hypothetical protein TGME49_005630 [Toxoplasma gondii ME49] Length = 850 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 56/231 (24%), Gaps = 9/231 (3%) Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 +S Q R LE + G G R + ++ V Sbjct: 107 VSSQLEREKDLERESDRDFMSDGRGDGEDVERRTEKESRKGNGREKRQKRFSVEVRESPQ 166 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGI----ELADKLFYIEKGSPVQALVNTGHKVG 582 ++++RA++ E R I EL + +EK S Sbjct: 167 -----MHRRRASLAGEEWREAGDIGEESEAGPHTELEVEADVVEKKSEKTRRTRHRPVKK 221 Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 A K + +DE P + + EE+ G +++ R R Sbjct: 222 KAEPALDRKKTQGDLEEDEGEAPRAALSRRTRTKVDEDGEETRGKAKEKTSGNARGRGDN 281 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 A + + + H + Sbjct: 282 TGSVASEGAPQPRGPLRRSPRLEGQEQRRQEREAEQEYVETHATKTEGQAT 332 >gi|145257371|ref|XP_001401706.1| AT DNA binding protein (Thy28) [Aspergillus niger CBS 513.88] gi|134058620|emb|CAK38604.1| unnamed protein product [Aspergillus niger] Length = 304 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 9/108 (8%), Positives = 22/108 (20%) Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + A + + + ++ R R+ D Sbjct: 1 MAPQRKRKSESASIAEETESPAAKRVAAPDTPATGEKRKRGRPRKYPEGSTPKRPDGPKR 60 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 ++ + P +N TE + P + Sbjct: 61 GRGRPRKDPNAPTPAKSTTPKQGKRGRPRKNPIENGTEPTSSTTKPET 108 >gi|118367274|ref|XP_001016852.1| FHA domain containing protein [Tetrahymena thermophila] gi|89298619|gb|EAR96607.1| FHA domain containing protein [Tetrahymena thermophila SB210] Length = 776 Score = 38.4 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 46/179 (25%), Gaps = 10/179 (5%) Query: 539 IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVW 598 + E + V + + + +L I K K D + + Sbjct: 413 LKYGEVKLKVKV---ADKDKSAQLMNICKIKDGNNNDEDSKKRYDDKRGSERSRRERSSD 469 Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + + + S RK R + R + ++ D + ++N Sbjct: 470 RHRDRSSERYRDRDSKYKRRYSKSRSRSNDRKLRDKNRVSKFDNNNQDKEQKREREEVKN 529 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + + D E + V +S +++ ++ R Sbjct: 530 EQNQDLEKKQNSEDAQKKEEKEPSSK-------VKENKDKRKRSDSRDNNKKQDKRRDR 581 >gi|332665947|ref|YP_004448735.1| transcription termination factor Rho [Haliscomenobacter hydrossis DSM 1100] gi|332334761|gb|AEE51862.1| transcription termination factor Rho [Haliscomenobacter hydrossis DSM 1100] Length = 695 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 2/123 (1%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E E + ++ +L E+ + + G + + Sbjct: 123 EELEQQQALTRRDRNMPKLERTRDRNERTEKPERDPERDERGGRVEPQRPTREERPSRDE 182 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR--RRPATDHHDAGVVSDVSSIQ 657 P S ++ S + R R R R + ++ + Sbjct: 183 RPIRDERPSSRDERPSREERPSRDERPTRDDRPSRDERPTRDDRPSRDERPERNERTPRF 242 Query: 658 NVI 660 Sbjct: 243 ERE 245 >gi|327472751|gb|EGF18178.1| translation initiation factor IF2 [Streptococcus sanguinis SK408] Length = 930 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 6/124 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + E A P K+E++ ++ Sbjct: 58 ATAEKPAAAQPSPQKTPAKEAAPVKAEQTEAKAAAKPETKAETVAPVKRPQSRNFKAERE 117 Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + RR+++ R+P D + + D P+D ++ + Sbjct: 118 ARAKEEAERRKQQSNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177 Query: 683 AHGF 686 +G Sbjct: 178 RNGQ 181 >gi|156841156|ref|XP_001643953.1| hypothetical protein Kpol_1001p7 [Vanderwaltozyma polyspora DSM 70294] gi|156114584|gb|EDO16095.1| hypothetical protein Kpol_1001p7 [Vanderwaltozyma polyspora DSM 70294] Length = 598 Score = 38.4 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 52/202 (25%), Gaps = 12/202 (5%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 ++ YLL+ E I V+ + + + Sbjct: 296 EISSYLLDIDPPDESLLEMMIKRKIEVLREYTYNSVSVFSTTFQIGYEPLAIPLVTKEEP 355 Query: 586 QAPSYDKNIEC--------VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRR 637 +K E + E E + ++ V EE+ + + + Sbjct: 356 VMTEVEKEEESGAKEESEVKEESEVKEESEVKEEPKRKEEFEVKEEAKIKEEVKTKEEVK 415 Query: 638 RRPATDHHDA----GVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 + + +A GV + + S + +P + +N + Sbjct: 416 TKEEANLDEAKTGEGVKPEDKAELEDKTKSDEGKAKPEEEVKPETKIEKEKTNPQNKTTT 475 Query: 694 IPPVSTPEMESSNSSSDPIVKK 715 P + E ++S K Sbjct: 476 PEPTAKVIEEEDKNTSITEKPK 497 >gi|195573901|ref|XP_002104930.1| GD18194 [Drosophila simulans] gi|194200857|gb|EDX14433.1| GD18194 [Drosophila simulans] Length = 1098 Score = 38.4 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 40/163 (24%), Gaps = 13/163 (7%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP------------IPKSES 611 + K P Q + + + E KS Sbjct: 253 SLAKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEPDSDYEAPAAEEEEEEERKSSG 312 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E+ N E ++RR++ + ++D + S + + Sbjct: 313 DEEEAANSSDSEVMPQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDADGD 372 Query: 672 DIT-NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 D + T++ D++ + E + D Sbjct: 373 DDKQKNKRKHIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQK 415 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 41/154 (26%), Gaps = 2/154 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 +A + S++ S + E + S ++ + S+ Sbjct: 268 SDSEEAATTSKKSRQRRSKSESEPDSDYEAPAAEEEEEEERKSSGDEEEAANSSDSEVMP 327 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 RKRRR++ + + + + S D Sbjct: 328 QRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDADGDDDKQKNKRKHIRKII 387 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + D+ + + + + I + + + R Sbjct: 388 KTKDLDL--TTKEAAKEEDDRRKRIEDRQKLYNR 419 >gi|23306002|gb|AAM54369.1| profilaggrin [Rattus norvegicus] Length = 501 Score = 38.4 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 2/93 (2%) Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + +RR RRR + S + E I N + Sbjct: 111 EERREKVQRRHRRRNSGTDGKQENERSKSPRGRGKKRRGSSTISEESDTIRNSDTENKRH 170 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 H + S + + + S VK+T Sbjct: 171 HHGSNRRQRRGSNSS--DRKETRSKKHREVKET 201 >gi|268575020|ref|XP_002642489.1| Hypothetical protein CBG06908 [Caenorhabditis briggsae] Length = 527 Score = 38.4 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 40/150 (26%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + + + + + ++ ++ E Sbjct: 144 RNSEDDDEDYVYEDEKPAKKRRKDEARRAMAVKQKQAAEDQRRKAEAAAEERQKKAEEKR 203 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + + RR RR+ AT + + + D + + LE Sbjct: 204 LEKNRRDAERRKNEATKRAIQQQQQQAAMLAAQEREQKDQTAKRLSLMEMGELEMQGMPI 263 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 ++ P STP+ + + ++ Sbjct: 264 VDDKKKRKRPESTPKRQPRVRQNSEDDQEV 293 >gi|289617985|emb|CBI55562.1| unnamed protein product [Sordaria macrospora] Length = 740 Score = 38.4 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 38/171 (22%), Gaps = 8/171 (4%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC-VWQDEALLPIPKSESLEDIQDN 618 ++G + S S ++ + V + K+ ED + Sbjct: 324 SPSKAAQRGGTEREEHQGSEAGDRQSDTRSDERAEDGGVETERPSRQTRKNRDQEDETEK 383 Query: 619 IVS-EESTGVIRKRRRRRRRR------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + R+R RR +P T + Q D+ Sbjct: 384 AQEISDKEAARIIGRKRPRRAVPTPSPQPETRPSEEEPQPKRRRRQAEPADTTQPKQTKI 443 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + P + P KK R +R Sbjct: 444 QRERVQRAPTPVPSPPKIPQKQQKQPKQPTSRKPTIQNPPKPKKGRKTTKR 494 >gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] Length = 573 Score = 38.4 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 45/166 (27%), Gaps = 6/166 (3%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + K + SQ +K ++ K + E +N + Sbjct: 403 DYQSHKDKKQGNNKQRSRRPEPQSQDSFDNKAQHSQERNPNYRQKNKGQGQEQQNNNNNA 462 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E+ V ++ R+ + R+ + N D S + + N+ + Sbjct: 463 VEAKSVSKRNNRQDKNRQTDKQMKSNNNRRNDKEAANNKDASQKTNAQQNRKPNNKKKKK 522 Query: 682 ------GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 T P S+S ++KK W R Sbjct: 523 NNRQRNTNEKATRRSTKYDIREELPTSSKSDSGLKALIKKPLKWLR 568 >gi|297268403|ref|XP_001094093.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Macaca mulatta] Length = 1298 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 35/144 (24%), Gaps = 12/144 (8%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES------------ 624 +D P + +DE SES D N E+ Sbjct: 1148 EDKLKIADEGHPRNSNSNSDSDEDEQRKKRASSESDSDENQNKSGSEAGSPRRPRRQRSD 1207 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R+RR + + V S S +DS + Sbjct: 1208 QDSDSDQPSRKRRPSGSEQSDNESVQSGRSRSGVSENDSRPASPSAESDHESERGSDNEG 1267 Query: 685 GFTENYDVSIPPVSTPEMESSNSS 708 + + S P S E S Sbjct: 1268 SGQGSGNESEPEGSNNEASDRGSE 1291 >gi|195333992|ref|XP_002033670.1| GM21450 [Drosophila sechellia] gi|194125640|gb|EDW47683.1| GM21450 [Drosophila sechellia] Length = 851 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 2/157 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+G+ + T ++ S D + +++A +S+S + ++ Sbjct: 242 DVERGAIFKEDKKTATLKDDVKKSFSKDDAWKSRTKEDAKKSFQRSKSPRP-EHLKTTDR 300 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + +R R R R P + + SS ++ S ++ Sbjct: 301 KSTAQTRRPDRHRSRSPKQNSRRDHHRNQESSPRHAKRRSHSASPSKINL-PREKANAIT 359 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + P + S P K K Sbjct: 360 KLTDDETNAQRSKSPVPVTAKLVTESQPAEKVKSNRK 396 >gi|194896322|ref|XP_001978456.1| GG19595 [Drosophila erecta] gi|190650105|gb|EDV47383.1| GG19595 [Drosophila erecta] Length = 2532 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 2/174 (1%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE--ALL 604 G I + + +G V ++ + S + K + + Sbjct: 667 GKKIPTKVESNFVTEKVIDCRGKTVVEKISQRPRTPSPTTPKKNTKPSQKSIPERVLETE 726 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 P+ +S D + N + +R R + + + + + Sbjct: 727 SEPEKDSEPDTKKNTSVTVTKSETERRNSRTTKTKQPLQPKEPLTKVPAAKSPRKDSLTG 786 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + T + D + P + SS ++TR Sbjct: 787 RKRDSLVEETRTTTTTTTTRQGRKPSDTNGSPSIKDRLRSSPRKQKTSPQQTRT 840 >gi|326926643|ref|XP_003209508.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Meleagris gallopavo] Length = 1124 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 15/171 (8%), Positives = 29/171 (16%), Gaps = 8/171 (4%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 I + P D P + E +P + Sbjct: 386 KPDSSFIVNPASITRNIPEVDRSKKPSIKIPDDSKPKSESTPSDSQPIENARVVPDRSTK 445 Query: 613 EDIQDNIVSEESTGVIR--------KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 + V E ++ +R + R + Q Sbjct: 446 PLLDAKSVLTEEEKSRVHAETAALMEKNKREKELRERQKEEQKERLKREKEEQEQKAKEE 505 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E + + E E + + K Sbjct: 506 QREKEHKEKLQQSKEEREQKERDEQIKREQEEKEKEKARKEAIEAKKQNKN 556 >gi|301308164|ref|ZP_07214118.1| translation initiation factor IF-2 [Bacteroides sp. 20_3] gi|300833634|gb|EFK64250.1| translation initiation factor IF-2 [Bacteroides sp. 20_3] Length = 973 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 3/189 (1%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI---EKGSPVQALVNTGHKVGSDSQAP 588 LN T+VE+ R G S+ ++D+ + + E G + + +AP Sbjct: 12 LNVGINTVVEFLHRNGFSVEDNPNTRISDEQYALLVKEFGKDLPEKDRNFAADRAQKEAP 71 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 S + + ++ D + + + + + + Sbjct: 72 SVKEEKTAEIKTVIPEEFRPKIVMKGHIDLDGGQHKKQQEEPKAKEEPKVKEEPKVKEEP 131 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 V + + + E P V+ P++ES Sbjct: 132 KVKEAPAAPAAQAPVKPAQPAQAPTEKKEEKVIVVEVEKEKTVEKQPVVAEPKVESVKPE 191 Query: 709 SDPIVKKTR 717 + + + Sbjct: 192 QEVEKTEEK 200 >gi|189190726|ref|XP_001931702.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973308|gb|EDU40807.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 2856 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 40/165 (24%), Gaps = 4/165 (2%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 +V + P +V AP + E K Sbjct: 351 VIVEDPAEVTPESVASESVPPSEAAPEPSEVAVSEVAPEPSEVAVSEDNAEVQEETAKDG 410 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 + + + +E + A VV DVS+ + V+ + P Sbjct: 411 PPSEEEAPVSTEAPVESEPPTSDTPADAEEPSQDEPAPVVEDVSAPEAVV----EAETTP 466 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + ++ A T +V P E + + Sbjct: 467 AAEETSVPVDEPAADSTVKSEVPAPAEVPAETSEAPPDEPESPSE 511 >gi|163786498|ref|ZP_02180946.1| outer membrane protein, ompH family [Flavobacteriales bacterium ALC-1] gi|159878358|gb|EDP72414.1| outer membrane protein, ompH family [Flavobacteriales bacterium ALC-1] Length = 369 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 2/155 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 +AL + ++++ K +E K E ++ ++ Sbjct: 184 KERKALQDEAVVPVANAEKDDRQKALEERKTTREAELAAKRAEREKAAEDRKKQQQELRD 243 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K+R RR+ A D S S N ++ + ++ + Sbjct: 244 AKKREAEERRQKALDARKK--NSKTSEKANTTAKDTTAKVKTIVKNDSTKVKEAVKKDST 301 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 N E + D +K R+K Sbjct: 302 NSKKPKTAAQILEEQRQKKVKDREARKKALDDRKK 336 >gi|3858885|gb|AAC72432.1| proliferation potential-related protein [Mus musculus] Length = 1560 Score = 38.4 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 14/199 (7%) Query: 532 LNQKRATIVEYEARF-GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 +R YE + G ++ + F E+ P+ + + + A Sbjct: 596 REWERKYREWYEKYYKGYAVGAQPRPSANREDFSPERLLPLNIRNSPFTRGRREDYAAGQ 655 Query: 591 DKNIECVWQDEALL-PIPKSESLEDIQDNIVSEEST-----GVIRKRRRRRRRRRPATDH 644 + + S + +D + E + ++ R+RR + Sbjct: 656 SHRNRNLGGNYPEKLSTRDSHNAKDNPKSKEKESENVPGDGKGNKHKKHRKRRNEEKGEE 715 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITN-HNLLENGAHGFTENYDV------SIPPV 697 ++ + ++ S + +D E+ E D S+ Sbjct: 716 SESFLNPELLGKFRKCRGSSGIDETKTDTLFVFPSREDATPVRDEPMDAESITFKSVSDK 775 Query: 698 STPEMESSNSSSDPIVKKT 716 E + SD +K+ Sbjct: 776 DKREKDKPKVKSDKTKRKS 794 >gi|262382599|ref|ZP_06075736.1| translation initiation factor IF-2 [Bacteroides sp. 2_1_33B] gi|262295477|gb|EEY83408.1| translation initiation factor IF-2 [Bacteroides sp. 2_1_33B] Length = 973 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 3/189 (1%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYI---EKGSPVQALVNTGHKVGSDSQAP 588 LN T+VE+ R G S+ ++D+ + + E G + + +AP Sbjct: 12 LNVGINTVVEFLHRNGFSVEDNPNTRISDEQYALLVKEFGKDLPEKDRNFAADRAQKEAP 71 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 S + + ++ D + + + + + + Sbjct: 72 SVKEEKTAEIKTVIPEEFRPKIVMKGHIDLDGGQHKKQQEEPKAKEEPKVKEEPKVKEEP 131 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 V + + + E P V+ P++ES Sbjct: 132 KVKEAPAAPAAQAPVKPAQPAQAPTEKKEEKVIVVEVEKEKTVEKQPVVAEPKVESVKPE 191 Query: 709 SDPIVKKTR 717 + + + Sbjct: 192 QEVEKTEEK 200 >gi|195442125|ref|XP_002068810.1| GK17830 [Drosophila willistoni] gi|194164895|gb|EDW79796.1| GK17830 [Drosophila willistoni] Length = 765 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 38/168 (22%), Gaps = 14/168 (8%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + + + E + + E+ + + Sbjct: 3 ASKEELPDVAASDVPIDTVAEEATEEQNLEPDKEQVNENQEAEPKQSQEEIKTAEPSAEQ 62 Query: 630 KRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 K R + GV + + N +S D D + Sbjct: 63 KEPSSHRLSGAPSSAEPNGVSQEQLTQKSNKQKESGDKLSVVQDQGDAESKGKSKKASLA 122 Query: 689 NYDVSIPPVSTPE-----------MESSNSSSD--PIVKKTRWWKRRK 723 + P+ + + + S KK R ++RK Sbjct: 123 EEQAAEMPIEKTQEELEEDEMLDEVVETRKSKQLTDEEKKQRDRQKRK 170 >gi|195152555|ref|XP_002017202.1| GL21650 [Drosophila persimilis] gi|194112259|gb|EDW34302.1| GL21650 [Drosophila persimilis] Length = 3556 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 41/158 (25%), Gaps = 7/158 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + Q + I + + + E + Sbjct: 2704 ENREKQEPEVAAEEAVKQEARKVTRLARNDGQPPAKEIQPA--AKRARKGSSVERTAEAS 2761 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R RRR R+P+ + +V ++ + S E D E + T Sbjct: 2762 ELERPRRRGRKPSAEVQPILEEKEVITNTRRGRKPSKQSSEEAKDNEAQPKTEEILNPIT 2821 Query: 688 ENYDVS--IPPVSTPEMESSNSSS--DPIVKKTRWWKR 721 E+ S + + P+ S K+ R Sbjct: 2822 EDNMPSEHVKQMDPPKRNQEESKELLPSTTKRGRGRPP 2859 >gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51] gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51] Length = 827 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 2/117 (1%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F ++KG +A + + +++ P ++ E+ Sbjct: 641 DFTLKKGRKRKASDADTAVAPPPKSESASASASDAETSNDS--PAAAADESENPDAEAQG 698 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 EE RR+ RR A A + + + +P + + Sbjct: 699 EEPNSKTTTLPTRRQNRRAAAKQAKAAQAGKKKTPSEGANTEAEAEPQPESEQDDDE 755 >gi|302510415|ref|XP_003017159.1| SAP domain protein [Arthroderma benhamiae CBS 112371] gi|291180730|gb|EFE36514.1| SAP domain protein [Arthroderma benhamiae CBS 112371] Length = 691 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 1/139 (0%) Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 V + P+ + E V + +S + D +E T RKR+RR + P Sbjct: 180 VKEPAPEPAPEPAQEPVQEPVQEPVKDESVNKTPSTDVEAIKEDTDESRKRKRRSQTPPP 239 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP-PVST 699 + Q ++ E A D + T Sbjct: 240 SPRSIALKKARLEEERQQSRSTQEEIKAEERKEEQEAPAAAPAIAEPPARDTDVEMKEGT 299 Query: 700 PEMESSNSSSDPIVKKTRW 718 P ++ K R Sbjct: 300 PPAPEPKQETEEDESKDRV 318 >gi|330446485|ref|ZP_08310137.1| electron transport complex, RnfABCDGE type, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490676|dbj|GAA04634.1| electron transport complex, RnfABCDGE type, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 852 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 58/251 (23%), Gaps = 8/251 (3%) Query: 433 KKNNRSVEKKLKESLKKDRARVQVGAISNF--GLLEMSRQRIRSSVLESTTKVCTYCKGA 490 K + + + A V S L ++ + E + C C Sbjct: 365 PKRKELPLHTYEMACIRCSACADVCPSSLLPQQLQWYAKDQNYEKCEEYNLQDCIECGAC 424 Query: 491 GYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI 550 Y+ + R + + + I + E E RF + Sbjct: 425 AYVCPSEIPLVQYYRQAKAEIWARSQDEINAERARQRFEAKQARMDRDKAERENRFKKAA 484 Query: 551 NVVIGIELAD--KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPK 608 + V+A + + + A Sbjct: 485 ETRREEMAKTGGDDAVAAAIARVKAKQAAAQNEKPEVKPAVAAAIAAAKAKQAASAQGAT 544 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 SE+L D + E RKR+ R R+ S+ S V Sbjct: 545 SETLPDNSEMAKLRE----ERKRQARERKAEKEAGESTTSASSNDSKKDAVAAAIARAKA 600 Query: 669 EPSDITNHNLL 679 + + + Sbjct: 601 KKAQQASEQKA 611 >gi|324499657|gb|ADY39859.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum] Length = 2707 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 50/199 (25%), Gaps = 14/199 (7%) Query: 529 LYLLNQKRATIV-EYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 L+ + + E GV + + +L +E S S Sbjct: 747 EQLMEHEADEESLKTEEAGGVELELERTDDL--PETAVESSSGETTRDGKDTAASSVIGN 804 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG-----VIRKRRRRRRRRRPAT 642 + E + +E+ + + EES +KR + RR P Sbjct: 805 VEEEDEDEEEEDETKSSAEVGTEATPSRESTLPLEESRSSHAETTSKKRAKPPRRALPKK 864 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 D VSD + + I + + + DV + V Sbjct: 865 RRRDEEEVSDEPADDDFIPEPAKRTRKKVRTKRREKDNDS------FSDVPVEYVEKRRS 918 Query: 703 ESSNSSSDPIVKKTRWWKR 721 + + W Sbjct: 919 GRTLGAEKKNYDLQAKWDE 937 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 16/146 (10%), Positives = 35/146 (23%), Gaps = 3/146 (2%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P + + S + K + + E + D + Sbjct: 830 PSRESTLPLEESRSSHAETTSKKRAKPPRRALPKKRRRDEEEVSDEPADDDFIPEPAKRT 889 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 +++ R +RR D V V ++ + + E ++ Sbjct: 890 RKKVRTKRREKDNDSFSDVPVEYVEKRRSGRTLGAEKKNYDLQAKWDEMEEELVE---DD 946 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKK 715 D + E +KK Sbjct: 947 NDTPSREIKKEEPSEYIIEKVMSMKK 972 >gi|320032731|gb|EFW14682.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 646 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + Q I +E +P+ E+ + +R Sbjct: 378 AEAEAELAQRQKRRISGRIPEASGEEKPGQLPEQFRGEERPGAVPGTREPAREAERTEES 437 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 +R R +AG+V+ V D ++ + T +E + + Sbjct: 438 KRFREG--DKEAGLVAGVGQPPRKESDREEIPEQFRAETPGQPVEERPQAPVQERVAGMA 495 Query: 696 P--VSTPEMESSNSSSDPIVKKTRWWKRR 722 P E + K++RW +RR Sbjct: 496 PGVEEPVEAVPPPHEGEEAHKQSRWARRR 524 >gi|312210769|emb|CBX90855.1| hypothetical protein [Leptosphaeria maculans] Length = 787 Score = 38.4 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 14/164 (8%), Positives = 41/164 (25%), Gaps = 9/164 (5%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + ++G + A + + + + ++ + E+ + Sbjct: 288 AQATSDPHSGSPQHTRDTAADVSASGSDSERGRLRRKRSREDFEDEGEAEKQPEKRPELG 347 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITN---------HNLL 679 +R RR+R R + D + + + +D P Sbjct: 348 SERHRRKRSRDISRDEIPPTKPAPSTISRIAENDGDGQTNTPKKDDAAATTATDKVSRTG 407 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + T + E S + + ++ Sbjct: 408 TSPKTKRTREQLEEETETTEKNSEGIADSGKTRTESSGERDTKR 451 >gi|313234590|emb|CBY10545.1| unnamed protein product [Oikopleura dioica] Length = 682 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 10/202 (4%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +G + + AL + R E + A + T V + + A + + EA+ Sbjct: 352 SGKAKEKIENALKMARKAAEVA-KQKAEIAMTRTQHAVAKASQSDEVAELAKDEAKIARC 410 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + E + + ++ ++ ++ + ++D + I Sbjct: 411 VAKEMSPEYHQP-----GLEYAKNAREFNGEYQEPRRSETFPQSGDANFRDGSSSQIYD- 464 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + N R+ ++ R RR +G S SS N ++ Y E Sbjct: 465 ---DQQSINSSEHGQRMPRRRPQKSRDRRNSYAQSQLSGSKSPSSSSLNRLNRRAHKYSE 521 Query: 670 PSDITNHNLLENGAHGFTENYD 691 ++ ++ EN Sbjct: 522 NERHRDNRDPQDVEMMEDENGA 543 >gi|288904588|ref|YP_003429809.1| translation initiation factor IF-2 [Streptococcus gallolyticus UCN34] gi|288731313|emb|CBI12864.1| translation initiation factor IF-2 [Streptococcus gallolyticus UCN34] Length = 908 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 61/194 (31%), Gaps = 6/194 (3%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 L + +VEY G+++ + + +++ + + S Sbjct: 13 LGKSSKEVVEYAQELGLAVK---SHSSSVEESDVKRIVAKFSDKPQSTPAKPKVEKASEK 69 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV---IRKRRRRRRRRRPATDHHDAG 648 + A P+S + + ++ E+ K+RR +RR ++ +D Sbjct: 70 TVAQAPKATPATPAKPQSRNFKAEREARAKAEAERRANGGDKKRRNDQRRDDRSNRNDRQ 129 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + + QN D + + N + ++ + + + Sbjct: 130 GNAQNNRKQNKRDRNSQNHNRRDQRDNRHDNRQQPAKLRVDFKARAAAIKAEQNAEYSRQ 189 Query: 709 SDPIVKKTRWWKRR 722 S+ + + KR+ Sbjct: 190 SENRIHEQENAKRK 203 >gi|223997064|ref|XP_002288205.1| hypothetical protein THAPSDRAFT_261688 [Thalassiosira pseudonana CCMP1335] gi|220975313|gb|EED93641.1| hypothetical protein THAPSDRAFT_261688 [Thalassiosira pseudonana CCMP1335] Length = 457 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 6/154 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 P G + +A + +I+ E +P + S ++ N + G Sbjct: 165 KPKPISKGKGESKENAVRAKADKDSIKPASTKEQTIPKGTTVSSNAVESNDTPT-AKGEN 223 Query: 629 RKRRRRRRRRRPA---TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + +R RRR + + S + E + +T + + N ++ Sbjct: 224 KSKRPRRRSNKANNKYNRQRRQRKEKQSGASSKEKTKSPKVVGESATVTENLVKGNRSNI 283 Query: 686 FTENYDVSIP--PVSTPEMESSNSSSDPIVKKTR 717 T + + S+ P E+++++S+ +K T Sbjct: 284 NTSDGNNSLKEFKTKQPSSEANDATSESEMKHTG 317 >gi|260817441|ref|XP_002603595.1| hypothetical protein BRAFLDRAFT_93138 [Branchiostoma floridae] gi|229288915|gb|EEN59606.1| hypothetical protein BRAFLDRAFT_93138 [Branchiostoma floridae] Length = 627 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 49/176 (27%), Gaps = 7/176 (3%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 D EK P K P+ ++ + + + L + + Sbjct: 266 KAEPAAEDAKKEAEKEEPKTEPAAEEAKKEEPKAEPAAEEAKKLNKKLKRQLKRQRRRNQ 325 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + ++ +R+RRR + ++ ++ + Sbjct: 326 KLNRQLKRQRRRNQKLNRQLKRQRRRNQKLNRQLKRPRKNLKRRNQKLNRQLKRRKRRNQ 385 Query: 673 ITNHNLLENGAHG------FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 N L TE + P + E + ++P ++ + + + Sbjct: 386 KLNRQLKRQRRRNQKLGQERTEKTEPKAEPAAE-EAKKEEPKAEPAAEEAKKEEPK 440 >gi|195582979|ref|XP_002081303.1| GD10949 [Drosophila simulans] gi|194193312|gb|EDX06888.1| GD10949 [Drosophila simulans] Length = 812 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 46/157 (29%), Gaps = 2/157 (1%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+G+ + T ++ S D + +++A +S+S + ++ Sbjct: 203 DVERGAIFKEDKKTATLKDDVKKSSSKDDAWKSRTKEDAKKSFQRSKSPRP-EHLKTTDR 261 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + +R R R R P + + SS ++ S + Sbjct: 262 KSTAQTRRPDRHRSRSPKQNSRRDHQRNQESSPRHAKRRSHSASPSKIHL-PREKANAIT 320 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + P + S P K K Sbjct: 321 KLTDDETNAQRSKSPVPVTAKLVTESQPAEKIKSNRK 357 >gi|332016788|gb|EGI57609.1| hypothetical protein G5I_14350 [Acromyrmex echinatior] Length = 5046 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 56/188 (29%), Gaps = 10/188 (5%) Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 N+++ I + ++ + + ++T ++ SD S D Sbjct: 2718 NEEKEEISDLTETN--RFSLRPRRSKNIQHYEESDIEVDIYFMDTSMEINSDEIEDSRDA 2775 Query: 593 NIECVWQDEALLP-------IPKSESLEDIQDNIVSEESTGVIRKRRRRRR-RRRPATDH 644 + +E S + ++ + G +K+R R R + R ++ Sbjct: 2776 QKKQNEVEEETNRDTLQDSCTDDKSSQDIEVAKSKTDSTNGTKKKKRGRPRLKNRIISNP 2835 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 +A +++ N + ++ + NL T P+ Sbjct: 2836 SNASAPTNLEVNGNDSVATTNLDESKDEDQKLNLDTKERFDKTNKPSYIDANAQPPKRSR 2895 Query: 705 SNSSSDPI 712 +P+ Sbjct: 2896 GRPRKNPV 2903 >gi|301783281|ref|XP_002927054.1| PREDICTED: myosin-11-like isoform 2 [Ailuropoda melanoleuca] Length = 1972 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 73/242 (30%), Gaps = 19/242 (7%) Query: 463 GLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVH 522 G +E R+R + ++ + S + R +E + Sbjct: 1750 GNMETMSDRVRKATQQAEQLNNELATERSAAQKNESARQQLERQNKELRSKLQ------- 1802 Query: 523 THSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVG 582 ++ + ++ ++TI EA+ + ++ + + A Sbjct: 1803 ---EMEGAVKSKFKSTIAALEAKIA-----QLEEQVEQE----AREKQAAAKSLKQKDKK 1850 Query: 583 SDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT 642 + + Q + ++ + + +EE + I RR+ +R Sbjct: 1851 LKEMLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEA 1910 Query: 643 DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 + + +V+++++ + + P+ + + A G E D + + Sbjct: 1911 TESNEAMGREVTALKSKLRRGNETSFVPARRSAGRRVIENADGSEEEVDARDADFNGTKA 1970 Query: 703 ES 704 Sbjct: 1971 SE 1972 >gi|116202565|ref|XP_001227094.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] gi|88177685|gb|EAQ85153.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] Length = 666 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 46/163 (28%), Gaps = 10/163 (6%) Query: 510 YLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGS 569 + N +++ N+ R I E E + D F I Sbjct: 260 MARAFERSNAKYIQEMEMLEGEHNRLRKEIEELEKST-------PDPAVLDNHFKI---M 309 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + ++ Y+ I+ + ++ L E+ ++ + + + G+ Sbjct: 310 EEDKAKFEEYNTLAMQRSEKYEGRIQVLQEELDKLQGELKEAEDERRHLKDAVDDQGISM 369 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + R R + ++ + + + D Sbjct: 370 QDIDRMTAERERLQRSIESAGQRLEDVKRKVAEREMEASQRLD 412 >gi|71412310|ref|XP_808346.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70872532|gb|EAN86495.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 793 Score = 38.4 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 11/153 (7%), Positives = 43/153 (28%), Gaps = 2/153 (1%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + I + + + + +++ + + + + LE ++ Sbjct: 474 QQQSNDIIWEAKQRRMAAEKERKRLEAEEKERKRLEAEKERKRLEAEEKERKRLEAEKER 533 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E R+ + R+R + + + + ++ + Sbjct: 534 KRLEAEEKERRRLEAEKERKRLEAEEKERRRLEAEEKERKRLEAEEKEQRKEQQHARGEE 593 Query: 679 LENGAHGFTENYDVSIP--PVSTPEMESSNSSS 709 G + P++TP ++++ + Sbjct: 594 GVTGGKSQELRSQRRVSGHPINTPRAQNASRGN 626 >gi|257460853|ref|ZP_05625954.1| translation initiation factor IF-2 [Campylobacter gracilis RM3268] gi|257442184|gb|EEV17326.1| translation initiation factor IF-2 [Campylobacter gracilis RM3268] Length = 902 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 46/174 (26%), Gaps = 3/174 (1%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 GV I + IEK + + + + Sbjct: 2 GVLIKDIADELGYASKEIIEKAQEMGFKKVKTASNKVSEEEAAAIYDYIQTGILPGKKSK 61 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 P +S E Q++ K+ ++ + A +G S + D+ Sbjct: 62 PAKKSSEKAQEDENKPAKKQSETKKTAKKESPKKAESLKASGSKESAQSAKEPSDEKTRT 121 Query: 667 YMEPSDITNHNLLEN---GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + A E + + ++ S +S ++ ++K R Sbjct: 122 QEPEVKTEKSQNQKEEISSAPQEKEEKQNAASKPAPVQINSGDSIANESLQKRR 175 >gi|302899318|ref|XP_003048026.1| hypothetical protein NECHADRAFT_40195 [Nectria haematococca mpVI 77-13-4] gi|256728958|gb|EEU42313.1| hypothetical protein NECHADRAFT_40195 [Nectria haematococca mpVI 77-13-4] Length = 623 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 9/152 (5%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 P + + + A + +EA P + + S + Sbjct: 12 PGRKRGRPPNATKPTTSASQDRPDEYEADVEEAARPKQRGRPKKSADTVEQSPPQEEAPK 71 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 ++R R P+ D D ++ + S + + D+ L Sbjct: 72 RKRGR-----PSLDSKDGDATAEAQPKRKRGRPSLEKQRDEEDVVEDALK----PKRGRR 122 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + E + K+ R K Sbjct: 123 SKPTEEQQEEQPDEDEAVENAEKTKRRRGAKP 154 >gi|116003979|ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus] gi|115305270|gb|AAI23580.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus] gi|296480316|gb|DAA22431.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus] Length = 876 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 27/220 (12%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 L+ + + + + + + + KR + I EL Sbjct: 652 LKENKTLQKKEPSKSSMKKKVTKIAEAKKVMKRNF------KVNKKITFTDEGEL----- 700 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +++ VQ V+ + D+ + DK E + +++ + ++ Sbjct: 701 -VQQWPQVQKSVSKDTEEEDDAGGINLDKAKERLQEEDKFDKEEYRKKIK---------- 749 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + ++ + R RR + A + + DD D + E Sbjct: 750 AKHREKRLKEREARREASKRQAKARDEEEAFLDWSDDDDDGFDPSTLPDPDKYRSSEESD 809 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSD-----PIVKKTRW 718 EN I T +++ D KKT+W Sbjct: 810 SEDMENKISDIKKKQTMRKRNNSEVEDAGPASRDRKKTKW 849 >gi|313213221|emb|CBY37067.1| unnamed protein product [Oikopleura dioica] Length = 1519 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 36/149 (24%), Gaps = 3/149 (2%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I + + + D++ + + E+ E + SE + Sbjct: 600 IVEQEEQTDESSEHTSDLTTDSEEGPDRSFQPNMESESESESGSEEEEGSTDGSTESERT 659 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 T + R RR + A S S PS Sbjct: 660 TTSSPRERPVSRRN---SRRSKANARKRRSGAGAKKQKSRKASSTPSPRQAEEKRATVKT 716 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIV 713 T + P SS+S SD Sbjct: 717 TVTGPKQKTDGQAPGPIFISSSSGSDEET 745 >gi|331220085|ref|XP_003322718.1| hypothetical protein PGTG_04255 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309301708|gb|EFP78299.1| hypothetical protein PGTG_04255 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 3279 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 40/164 (24%), Gaps = 3/164 (1%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + A + F A + P + + P + E Sbjct: 2293 DPQPALQEFETAPQESEPAPQESESAPQEAEPVPQESEPAPQEPEPAPQEPETAPQESEP 2352 Query: 615 IQDNIV--SEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 +ES ++ + A + ++ Q + P + Sbjct: 2353 APQEAETAPQESESAPQEPESAPQEAESAPQDPQPALQESETAPQESEPAPQESESAPQE 2412 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 A E+ P E E++ S+P ++T Sbjct: 2413 ADPVPQESEPAPQEPESTPHDSQPAPQ-EAETAPQESEPAPQET 2455 >gi|149730773|ref|XP_001501165.1| PREDICTED: similar to Nucampholin homolog (fSAPb) isoform 2 [Equus caballus] gi|149730775|ref|XP_001501158.1| PREDICTED: similar to Nucampholin homolog (fSAPb) isoform 1 [Equus caballus] Length = 908 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 43/159 (27%), Gaps = 8/159 (5%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES-------LEDIQDN 618 E+ + + + + + +P + D + + Sbjct: 750 EQRHQETRTERERRSEKHRDKNSRDPNWRDPITKYTSDRGVPSERNSYSRVVNDRDQEMH 809 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + E G RK+R RR +H ++ ++ ++ + Sbjct: 810 VDLENKYGDPRKKRGERRNSFSENEHRHRTKDNENFRRKDRSKSREKNKKHSGSRSDEDR 869 Query: 679 LENGAHGFTENYDV-SIPPVSTPEMESSNSSSDPIVKKT 716 +NGA E S + + + P +K Sbjct: 870 YQNGAERRWEKSSRYSEQSRESKKSQDRRREKSPTKQKK 908 >gi|134081607|emb|CAK46541.1| unnamed protein product [Aspergillus niger] Length = 1129 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 54/207 (26%), Gaps = 2/207 (0%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R EE Q +A + ++S N R + + F Sbjct: 53 RIAEEQARQRSAQTSLSRSNSARHPTGRNLSPTRRTSRPRRNTGTPVRGPDPNEFEPEFA 112 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I T + + ++N K E+ + N E Sbjct: 113 IGDDEGSSR-SATPRLESAGGSEAAPEENTGEGKTSSEESATKKPEAQPVTETNQSPSEL 171 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME-PSDITNHNLLENGA 683 IR + RR + + Q ++D + D + + G Sbjct: 172 PPEIRVKLRRLGKLESRYQAERDDYKKKLEESQKSTKAAWDEVTKLKEDSKSQAKKDEGP 231 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSD 710 + D S P + ++S S + Sbjct: 232 TSESSATDKSTPDSAAKSGKASTSGAK 258 >gi|331217489|ref|XP_003321423.1| hypothetical protein PGTG_02465 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300413|gb|EFP77004.1| hypothetical protein PGTG_02465 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1891 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 2/142 (1%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 E++ + + + + + S SQ P + + P S + ++ Sbjct: 1743 EAEMSPDVSAADAMRGLSIDQSQPAQGTSGSQRP--PDSQKDKEPTPPPNAQPSSAANKE 1800 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 S+ S I +R +++ R+P+T + S S + E D Sbjct: 1801 NPAPPSSDRSDSPIPRRTKKKAPRQPSTPPSEPQDSSVRSGKNRQPTPTQYSDDEEEDED 1860 Query: 675 NHNLLENGAHGFTENYDVSIPP 696 + N P Sbjct: 1861 EEEDEDGDESAEERNRRRKEPK 1882 >gi|289613707|emb|CBI61548.1| putative HOS4 protein [Sordaria macrospora] Length = 1631 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 40/150 (26%), Gaps = 3/150 (2%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE-ST 625 + + S A + + + + E+ + + I E Sbjct: 838 RPKKDDKIPTIAVSDREASPAGRVPSKAKRAAEHDVAAASSEGETPKPRRKLISGRELKG 897 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++RR + + + Q + D + L +G Sbjct: 898 EREKQRRASVTSNGSSFRDQSSSPRDECEKPQMMEKYHDRTKAIRRDESRDRLSISGESS 957 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + PP P + ++S P K+ Sbjct: 958 RKRHRSSATPPH--PGSQEKDTSEVPAKKR 985 >gi|195391190|ref|XP_002054246.1| GJ24342 [Drosophila virilis] gi|194152332|gb|EDW67766.1| GJ24342 [Drosophila virilis] Length = 2780 Score = 38.4 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 44/180 (24%), Gaps = 12/180 (6%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---------PSYDKNIECVWQDEALL 604 + IE + T + ++S+ DK + Sbjct: 1407 ADERVETPEDTIEDKISATTIAPTSEEASTESEEEPSSTETHVADVDKEPVEDAEKIPAS 1466 Query: 605 PIPKSESLEDIQ---DNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 E + + + + + R + D + S + Sbjct: 1467 STGTPSEAEKVTTLVPSTDASKPSESTEDSVSATTLRPETEEDQDTKKLHIPLSTTEIST 1526 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 S + +P+D + E + P + + E+S+ S ++ Sbjct: 1527 KSEEDAKKPTDDETSTEADIDKKPTQEPQITTKAPKTEEDKETSDDISTSAPADSKDQDE 1586 >gi|325958492|ref|YP_004289958.1| hypothetical protein Metbo_0735 [Methanobacterium sp. AL-21] gi|325329924|gb|ADZ08986.1| hypothetical protein Metbo_0735 [Methanobacterium sp. AL-21] Length = 453 Score = 38.4 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 22/202 (10%), Positives = 47/202 (23%), Gaps = 29/202 (14%) Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 V + +K+ I E K + S + Sbjct: 72 VKPVMTKEKKGPIERIEKSIKPP----------------AKSKTTPKIKPKPSPEVSKAS 115 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPAT---- 642 S Q + + PI + + + E + + ++P T Sbjct: 116 KASKASPERPEKQLKKIEPIVSRPVPKKVNTSEEKEILEKTTKPPELSGQTKKPVTVARG 175 Query: 643 ---DHHDAGVVSDVSSI---QNVIDDSFDMYMEPSDITNHNLLENGAH---GFTENYDVS 693 + + V Q I + +P ++ T N + Sbjct: 176 LEIQNKEPSKVKPTPKPVTSQPRIVPTPVNKKQPEKTEDNKKSSPVKPVLLKETTNNSET 235 Query: 694 IPPVSTPEMESSNSSSDPIVKK 715 + P + + S + K Sbjct: 236 VEDKPKPVPKHVDVSKLNLKTK 257 >gi|296824570|ref|XP_002850676.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238838230|gb|EEQ27892.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 867 Score = 38.4 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 39/181 (21%), Gaps = 12/181 (6%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603 E+ L K S +W++ Sbjct: 425 EPESPFETPEQEQERVREADKLKEKSGLEETPVHLDKSESQEYHSKQRFPSRDIWEEAPE 484 Query: 604 LP--IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI- 660 E ED + N E+ + R R+ R +T+ + + Sbjct: 485 SQQLTASVEIPEDSEKNEKLEKPSLPSLPPRPSRQPDRSSTEEQTDVSPTKTQVVSPTEL 544 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + P + H E +I T E + P + Sbjct: 545 KKRPSIPDRPKPQVPQRPTKKKNHEAGETLTKTISGEPTDEAVRPVPRAKPAIPPRGVGP 604 Query: 721 R 721 + Sbjct: 605 K 605 >gi|306823202|ref|ZP_07456578.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679] gi|309801655|ref|ZP_07695776.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022] gi|304553834|gb|EFM41745.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679] gi|308221787|gb|EFO78078.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022] Length = 704 Score = 38.4 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 3/134 (2%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F E+ + + H + + E + ++ + E+ +N + Sbjct: 491 FKSERSDRNER--SERHSDTYEERFKPARNRAERRAEKFRGRDNREALAREERWENPEVQ 548 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 E+ +R+R +RR H+ ++ Q + + Sbjct: 549 ETHRDEHERKRNDKRREKYARLHEQQ-RTEADEPQEFGRRGSSGKKAKQSRKQFDKRQGA 607 Query: 683 AHGFTENYDVSIPP 696 D Sbjct: 608 PSKKQRKADAREQR 621 >gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] Length = 459 Score = 38.4 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 31/245 (12%) Query: 500 ALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV----IG 555 A+ + R + + + D V Y ++ ++E+ + V ++ + Sbjct: 139 AIYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNFKSKLIEWSQKNRVKLDFIVKEQGK 198 Query: 556 IELADKLF------------------YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 + F E L K + E Sbjct: 199 DKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLERLKKEPQFIDRVFAAKAERT 258 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQ 657 +++ K+ + + + V + + + + + + + ++ Q Sbjct: 259 KNEDSAEGNDKAATTQLLP---VKPANGPQTAPKESAKASVKETANEANKPKANLPTAEQ 315 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + P + E T N PE+ SS KT+ Sbjct: 316 AERSATQRTTERPEERAAEKKAERANERKTRNDAQRDKVTDKPEVPSSAEE------KTK 369 Query: 718 WWKRR 722 +RR Sbjct: 370 KQERR 374 >gi|241607902|ref|XP_002405902.1| condensin, putative [Ixodes scapularis] gi|215500699|gb|EEC10193.1| condensin, putative [Ixodes scapularis] Length = 1545 Score = 38.4 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 11/128 (8%), Positives = 30/128 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ G S + + + SE + Sbjct: 1265 ERLGEEAEQPPEGPAARVVSPSETPKGRKKKANAASPTGKQRSSEGPAARGTTSSARRGA 1324 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 + ++RR+R + ++ S + S + S + + + Sbjct: 1325 SAGQTSSTKKRRKRAEKQPEEELEQAETSPDGSERLQSVEEGTCGSPAGSESHEPPVSPS 1384 Query: 686 FTENYDVS 693 + + Sbjct: 1385 ESSADEAP 1392 >gi|156037708|ref|XP_001586581.1| hypothetical protein SS1G_12568 [Sclerotinia sclerotiorum 1980] gi|154697976|gb|EDN97714.1| hypothetical protein SS1G_12568 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1035 Score = 38.4 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 21/233 (9%), Positives = 61/233 (26%), Gaps = 8/233 (3%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 +R + R+ + + + D+ Y K T+ + EA+ ++ Sbjct: 719 KLRITGKRIDHLERAFRKEEAKKLPADYEAQRQRDLAAYEKT-KAQTLKDAEAKHAENVA 777 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ-DEALLPIPKSE 610 + + + + + K D++ + + + E + + Sbjct: 778 LKHRLARLVSHYESFRDDIAERRHEEFDKRRRDAEKELEKQVAQRRKEFKERKIREKRER 837 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 ++ + E + ++ R +R+ A + + E Sbjct: 838 EEQERKLREEEERAQKEKAEKDEREEKRKAEFAQLKAIREKERQEALEIAALQERRAEEA 897 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 S G I + + + K W ++ + Sbjct: 898 SKRRAEEKARGPVRG------APIERSDSTGERRAPLALAGASGKINWREKER 944 >gi|270009789|gb|EFA06237.1| hypothetical protein TcasGA2_TC009087 [Tribolium castaneum] Length = 1411 Score = 38.4 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 28/286 (9%), Positives = 85/286 (29%), Gaps = 14/286 (4%) Query: 439 VEKKLKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSS 498 VE + E K+D + + +S ++E + +++S LE + +++ + Sbjct: 659 VEAAVHEPPKQDVEKSEADKVSQTDIVEKESKIVQTSELEKDQVEENVQE----VKAAET 714 Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIEL 558 I+ VE + + + ++ ++ + + + ++ + Sbjct: 715 QVREIVEKVELKKNEKVIEQLQEKITDESKEKGVSVEKE--KDLDKKSDETV-----DQT 767 Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + +E+ L + + Q ++ + + + Sbjct: 768 TKEEKSVEESKDENDLKEVETTQEFEIVDENEKGGKVVTEQKLEIVEEKEKSLEKPEDEE 827 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E K + T+H + +I + ++ + + Sbjct: 828 KQVIEEKSSEEKNVEGESKNAEETEH--VTQKKEDETIVSKKEEFEEKTDKEERSNAAET 885 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW-WKRRK 723 L++ G E+ + ++ K R K+R+ Sbjct: 886 LDDKPPGNGEDVSAKSETEKNLDEKAKEKKLKKQKMKKRSERKKRQ 931 >gi|198450134|ref|XP_002137035.1| GA26805 [Drosophila pseudoobscura pseudoobscura] gi|198130906|gb|EDY67593.1| GA26805 [Drosophila pseudoobscura pseudoobscura] Length = 1069 Score = 38.4 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 31/120 (25%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 L +D++ S ++ + SE +N + + Sbjct: 188 SEDELPPPTKPEINDAEEVSDEELPAPQRAELPADAEVISEDELPSNNNNNNNNNNAGEP 247 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 K +R+ + + S + + S + Y S T N + Sbjct: 248 KTSTKRKAEKEQAEEAKDNAEQKSSEAASTREKSVEQYNPGSPTTESNDAPPSEKRPKVD 307 >gi|302797639|ref|XP_002980580.1| hypothetical protein SELMODRAFT_444593 [Selaginella moellendorffii] gi|300151586|gb|EFJ18231.1| hypothetical protein SELMODRAFT_444593 [Selaginella moellendorffii] Length = 1036 Score = 38.0 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 3/120 (2%) Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 EA + + I ++ + T R++ ++R R+ + + V + ++ Sbjct: 820 EAFAEMIQFRKGSQILASLENLRRTSHTRRKEEKKRSRQTESGNDAKRVKMEQTAKAAEE 879 Query: 661 DDSFDMYMEPSDITNHNLLENGAHG---FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + +P L+ +E V+ P E + + ++ + + Sbjct: 880 TPKTEEEKQPVADAMEETLKPEKENEDTESEARAVTPPTSEAKEAKETKEVNEGEQDEKK 939 >gi|302658303|ref|XP_003020857.1| hypothetical protein TRV_05035 [Trichophyton verrucosum HKI 0517] gi|291184724|gb|EFE40239.1| hypothetical protein TRV_05035 [Trichophyton verrucosum HKI 0517] Length = 1017 Score = 38.0 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 49/178 (27%), Gaps = 7/178 (3%) Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ-----APSYDKNIECVWQD 600 G +++ +A E+ + Q+ + + Sbjct: 21 NGKRPDIIGDANVAVPRLTPEQNAQGQSDLYKSKWATPVDEYQTAWEKILAGKGGPSASQ 80 Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR--RPATDHHDAGVVSDVSSIQN 658 +P + S Q +++ T ++ + ++R +P+T D + + Sbjct: 81 ITQAAVPAATSGAKQQPPTSTDKPTAGKQESKGKQRATTQQPSTSPQKIDRADDGHNKPS 140 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 S + + + + D PP T + +S P + Sbjct: 141 SQKGSSGKTLSANPPKPASTDKKNMAVGEGPSDSRRPPPVTSQQSQPATSLPPASEND 198 >gi|34540167|ref|NP_904646.1| transcription termination factor Rho [Porphyromonas gingivalis W83] gi|34396479|gb|AAQ65545.1| transcription termination factor Rho [Porphyromonas gingivalis W83] Length = 658 Score = 38.0 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 9/170 (5%) Query: 532 LNQKRA-TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 LN+K + G + K I K QA+ G + Sbjct: 9 LNEKAEAELAAIAGELG-----IANAGSMPKQELIYKILDEQAISVAGVRKEKQKTTEDR 63 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + ES + + +++R R R+ A + Sbjct: 64 HTERRKPGRPRKNAEEEAPESEDVAAAPAEPNDEEAQAKRKRGRPRK---AAEEIAEETR 120 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 DV + + E + + ++P + Sbjct: 121 EDVQQLVALAAAEETNATEKESAGRKPAAKTSTASPAKAPAKALPRPAET 170 >gi|325115929|emb|CBZ51483.1| putative Tyrosine kinase-like (TKL) protein [Neospora caninum Liverpool] Length = 3634 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 24/182 (13%) Query: 536 RATIVEYEARFGVSINVVIGIELADKLFYIEKG--SPVQALVNTGHKVGSDSQAPSYDKN 593 + + E G+ ++ V + + +++ + A S S + + Sbjct: 2631 NEEVEKSEREAGLGVSPVGDKQ-HRQHADLDRLLLAASGASAFVSLTGTPSSAVSSTELD 2689 Query: 594 IECVWQDEALLPIP----------KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 ++ ++ L KS++ SEES R+ R ++R R TD Sbjct: 2690 LDAFFEFREKLGKGSFGEVWRVRLKSDTQALAFPRKASEESKEDGRRNREKKRCRDDKTD 2749 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEME 703 D D++ E + + E +T + + T Sbjct: 2750 AADRE-----------KDETLGTEAEEGEKERTDRREEKPDAWTRTTQEPLENLETERAR 2798 Query: 704 SS 705 Sbjct: 2799 PE 2800 >gi|323698575|ref|ZP_08110487.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132] gi|323458507|gb|EGB14372.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans ND132] Length = 645 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 24/111 (21%), Gaps = 4/111 (3%) Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 DE P + + E R+R R RR + + Sbjct: 444 DELYQPTLHGKPAAPDTASEAQREPQRERPARKRGGRNRR----SDEPSGERRQARPAPA 499 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 +P E+ P E E+ ++ Sbjct: 500 ETADEPSQAKPRPSEGRQPREDRQPREDRQPREDRQPREEREPEARPGEAE 550 >gi|321458358|gb|EFX69428.1| hypothetical protein DAPPUDRAFT_300962 [Daphnia pulex] Length = 728 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 31/109 (28%) Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 +++ + + +++ + R +R R RR + + D S ++ Sbjct: 604 KSVSRSTDKPREDSKLSSKHADDGSREDRPKRIERSRREEHSRKEEYSRREDHSRREDHS 663 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 E T N + D P + S SS Sbjct: 664 RKEEHSRQEGRRRTESNEGKRTERRTRTPEDKGRDPKYPDDQGKSKSSR 712 >gi|198453881|ref|XP_002137752.1| GA26361 [Drosophila pseudoobscura pseudoobscura] gi|198132554|gb|EDY68310.1| GA26361 [Drosophila pseudoobscura pseudoobscura] Length = 3514 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 41/158 (25%), Gaps = 7/158 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + Q + I + + + E + Sbjct: 2666 ENREKQEPEVAAEEAVKQEARKVTRLARNDGQPPAKEIQPA--AKRARKGSSVERTAEAS 2723 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDV-SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R RRR R+P+ + +V ++ + S E D E + T Sbjct: 2724 ELERPRRRGRKPSAEVQPILEEKEVITNTRRGRKPSKQSSEEAKDNEAQPKTEEILNPIT 2783 Query: 688 ENYDVS--IPPVSTPEMESSNSSS--DPIVKKTRWWKR 721 E+ S + + P+ S K+ R Sbjct: 2784 EDNMPSEHVKQMDPPKRNQEESKELLPSTTKRGRGRPP 2821 >gi|270266183|gb|ACZ65024.1| PspC [Streptococcus pneumoniae] Length = 686 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 43/158 (27%), Gaps = 9/158 (5%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+G P + + + D E LP P + + + + Sbjct: 252 EQGEPKRRVKRGALGEQATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVAEA 311 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 K ++ RR T+ + + S V ++ E + + A Sbjct: 312 EKKAKAQKEEDRRNYPTNTYKTLELEIAGSDVEVKKAELELVKEEAKEPRNEEKVKQAKA 371 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E+ + + + KK +RK Sbjct: 372 EVESKQAEATRLEKIKTD---------RKKAEEEAKRK 400 >gi|242216366|ref|XP_002473991.1| predicted protein [Postia placenta Mad-698-R] gi|220726856|gb|EED80792.1| predicted protein [Postia placenta Mad-698-R] Length = 574 Score = 38.0 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 14/231 (6%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 + Q+ A R +EE + I V L + E + Sbjct: 92 WREQQTRQADEGWREMEEMRIAEDTPLIRVQEELAAAERLQKEAEDRARRAEDERQRA-- 149 Query: 552 VVIGIELADKLFYIE--KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 L + I + + L+ ++ + + ++ +DE + Sbjct: 150 --EEERLQAERQKILEMRIAEDTPLIRVQEELAAAERLQKEAEDRARRAEDERQRAEEER 207 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 E + ++ ++RR R+R + A + Sbjct: 208 LQAERQKILADEAKAAAEEQRRRAEEDRQRSDAERKKAN--------EEAQSAVAGKEKA 259 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + A + ++ P + + + K+ + + Sbjct: 260 EAARADAQRAAAEARAEMQKTKDALKKGIKPVIVPTREEYEATKKRLGYQE 310 >gi|313218555|emb|CBY43072.1| unnamed protein product [Oikopleura dioica] Length = 354 Score = 38.0 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 19/185 (10%), Positives = 49/185 (26%), Gaps = 6/185 (3%) Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 + ++ E + + + + + N+ K GS ++A K Sbjct: 42 DQDSVARLEYDHATILLIKPTALFSPSNYDV-----ANRKKNSSLKSGSSNEATKTAKKE 96 Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 +++ ++ + S + + R + A + + Sbjct: 97 NDEKEEDLIVVGEIVSPRPLRKARKDSARGGEAVDPSFKIERDKEVAPASEERVRRTSAR 156 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLL-ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + D + P IT T S V + ++ + Sbjct: 157 LSGSFSDKIKEAANSPERITKRKRNLSTTNENQTTRSSRSSSLVRNRNSKMNSPKIESAK 216 Query: 714 KKTRW 718 K+T+ Sbjct: 217 KETKT 221 >gi|301609938|ref|XP_002934517.1| PREDICTED: hypothetical protein LOC100492719 [Xenopus (Silurana) tropicalis] Length = 1028 Score = 38.0 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 16/223 (7%), Positives = 51/223 (22%), Gaps = 31/223 (13%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R + + + + + + Q + E E + Sbjct: 760 RRMVKRGIGAKKKVVPIRGPAKTGTSSKEQSKKEDSEAEKKTMK---------------- 803 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + + + + + + ++ + ++ +++ Sbjct: 804 ---------VKPPVKDPAKTGASSKEQAQKKDLEAGKKAIEVSSAKKAQPVKGPAKTQKR 854 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT------NHNL 678 + RR +R + + + + S E + Sbjct: 855 PLKRSSQPRRTVKRGIGAKKKVVPIRGPAKTGTSSKEQSKKEDSEAEKKVMKVKPPVKDP 914 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + GA + SS + P+ + KR Sbjct: 915 AKTGASSKEQAQKKDFEAGKKAIEVSSAKKAQPVKGPAKTQKR 957 >gi|198428558|ref|XP_002125219.1| PREDICTED: similar to polypyrimidine tract binding protein 2 [Ciona intestinalis] Length = 1029 Score = 38.0 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 13/150 (8%), Positives = 35/150 (23%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K + + S + D ++ + ++ SE Sbjct: 533 DKRGRDDRGRDAREDRPARSARDTRDDRSRKSLENSRSNNSAEKRVAPRSEEKRRSERER 592 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+R + RR+ + + + D+ + G Sbjct: 593 DSGRRRTPDKDRRKRESRRSNERKRTTDRKPNETTSDANKSSDPKKSSEQKKSSDAGKLS 652 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + E E + + + + Sbjct: 653 EKIVEKEEKEEIKMKEEEKQDGEAGKVKDE 682 >gi|37526280|ref|NP_929624.1| electron transport complex protein RnfC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785711|emb|CAE14696.1| Electron transport complex protein RnfC [Photorhabdus luminescens subsp. laumondii TTO1] Length = 852 Score = 38.0 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 57/251 (22%), Gaps = 13/251 (5%) Query: 464 LLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLL-----QYTAHN 518 L SR + + C C Y+ + + R + + + Sbjct: 396 LYWFSRGQEHEKARDHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQENRRSTE 455 Query: 519 IIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG 578 + + +R + E R S V + + + + QA Sbjct: 456 AKIRFEAKQARM----EREKLARDE-RHKKSAVQVDNKDKSAVQDALSRVKEKQANAGKV 510 Query: 579 HKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRR 638 Q P I + L ++E +I E T R+ Sbjct: 511 -VAIEPGQLPDNAAVIAARQARKEQLRARQAEKQAVENMSITPSEPTSAEDPRKAALAAA 569 Query: 639 RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--DITNHNLLENGAHGFTENYDVSIPP 696 A + + + + + ++ Sbjct: 570 IARAKAKKAAQNQSETPSPEAREPETTTSEKQDLHKDAVAAAIARVKAKKAQTQPLTETQ 629 Query: 697 VSTPEMESSNS 707 TP E ++ Sbjct: 630 AETPPAEETDP 640 >gi|313238286|emb|CBY13372.1| unnamed protein product [Oikopleura dioica] Length = 1487 Score = 38.0 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 16/166 (9%), Positives = 46/166 (27%), Gaps = 18/166 (10%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES------- 624 + + +S D++ E +++ + K + L D I S+E Sbjct: 425 KRPEKAKEVIDLESSPEPVDRDSENGSEEDPVKTKKKRDRLLDSSKIISSDEEFINNLKK 484 Query: 625 -----------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 R++++R + D + + +D S + Sbjct: 485 QGKKKRKLSTQEEEQRRKKKRIENSSEDENSEDGIGNKHIRKRRTKVDTSDEDEAGSDKE 544 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWW 719 + + S + ++ +++ K+ + Sbjct: 545 NIDEEEDGDGKKKKKEKAKSRKIMGDEKLSEETKAAEKAEKERKIR 590 >gi|293357409|ref|XP_238235.5| PREDICTED: filaggrin [Rattus norvegicus] Length = 804 Score = 38.0 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 3/117 (2%) Query: 599 QDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + ES + + + E +RR RRR + S N Sbjct: 87 ETSKKRRSQTKESGKRNEHDYKGYEERREKVQRRHRRRNSGTDGKQENERSKSP-RGRGN 145 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 S + E N + H + S + + + S VK+ Sbjct: 146 KRRGSSTISEESDTNRNSDTENKRHHHGSNRRQRRGSNSS--DRKETRSKKHREVKE 200 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 2/159 (1%) Query: 535 KRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNI 594 K + F ++V ++ + + QA T K S ++ Sbjct: 46 KNPNDQDIAEVFMQMLDVDHDDKIDFTEYLLMVLKLAQAYYETSKKRRSQTKESGKRNEH 105 Query: 595 ECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + +E + + + + E R R +RR ++ + + S Sbjct: 106 DYKGYEERREKVQRRHRRRNSGTDGKQENERSKSP--RGRGNKRRGSSTISEESDTNRNS 163 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 +N + + + E + E + + Sbjct: 164 DTENKRHHHGSNRRQRRGSNSSDRKETRSKKHREVKERN 202 >gi|85110788|ref|XP_963632.1| hypothetical protein NCU06791 [Neurospora crassa OR74A] gi|18376000|emb|CAB91734.2| hypothetical protein [Neurospora crassa] gi|28925318|gb|EAA34396.1| predicted protein [Neurospora crassa OR74A] Length = 659 Score = 38.0 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 3/134 (2%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + + V ++ + P+ K E E +++ + Sbjct: 1 MTRMKEVSTAPEIPNQKRKRGRPPNASKAGEDASGRAEETTRRPKPVEEAQAEDVGGASN 60 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 G ++ R ++ P T+ + V Q+ + N Sbjct: 61 PGPKKRGRPKKT---PHTEPQEEVSAPAVVEKQSKRGPKAREETIAEEPLNPRKRGRPLK 117 Query: 685 GFTENYDVSIPPVS 698 E+ + P Sbjct: 118 DRAEDVSTNAPAEE 131 >gi|332209478|ref|XP_003253841.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 1 [Nomascus leucogenys] gi|332209480|ref|XP_003253842.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 2 [Nomascus leucogenys] Length = 908 Score = 38.0 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 23/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + + E + + Sbjct: 718 RKKRHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 763 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D S D + + +++R Sbjct: 764 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 823 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ + S D S + ++ + +NGA E Sbjct: 824 GERRNSFSENEKHTHRNKDSENFRRKDRSKSREINRKHSGSRSDEDRYQNGAERRWEKSS 883 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 884 RYSEQSRESAKNQDRRREKSPTKQK 908 >gi|332018684|gb|EGI59256.1| Splicing factor, arginine/serine-rich 17A [Acromyrmex echinatior] Length = 615 Score = 38.0 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 38/139 (27%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 ++ A + ++EA + + ++ D++ + Sbjct: 277 SDNSISHRDFERKRLIAQDNLAAEKMRKREEAEKKRQEEQRKKEEADSMAKANRQRNREE 336 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 +R+R+ + D + Q +I + + ++ Sbjct: 337 KRKRKALTKFRKQEEDKVSMKIAREEQKLIKAQRQLESIRLLDELFDRIKTKVEKKEIKL 396 Query: 691 DVSIPPVSTPEMESSNSSS 709 D ++ S + +N Sbjct: 397 DQNMEKKSEKKNNQTNEKK 415 >gi|71000850|ref|XP_755106.1| mRNA splicing factor RNA helicase (Cdc28) [Aspergillus fumigatus Af293] gi|66852744|gb|EAL93068.1| mRNA splicing factor RNA helicase (Cdc28), putative [Aspergillus fumigatus Af293] Length = 1120 Score = 38.0 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 42/168 (25%), Gaps = 17/168 (10%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES- 624 ++ + D + + V + + + +D +E Sbjct: 80 DRSDAASKKKYRLVDMEPDLTDAASSLGPQNVEAERDKQRRREKDKDKDRSRGRSEKEDS 139 Query: 625 -----------TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 G ++R ++ RRR D D ++ + S Sbjct: 140 RRKRDRSRSRDEGSRERQRSKKLRRRAVGDFEDRWGDEEIPDDDYDDRGGEGQDFDESPP 199 Query: 674 TNHNLLENGAHGFTENYD-----VSIPPVSTPEMESSNSSSDPIVKKT 716 L + A + D ++E + + + KK Sbjct: 200 KRTRLEDGSASPRSTASDELDPETKKELERKRDLEERDELAKRLAKKD 247 >gi|300122625|emb|CBK23193.2| unnamed protein product [Blastocystis hominis] Length = 1081 Score = 38.0 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 41/168 (24%), Gaps = 19/168 (11%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 ++ + +K A S + + + ++ +++R Sbjct: 62 PSTNSEGSQKNNPSTKGEKQKSSQQAKPARKEALASAATMNPEAAEFLPQTQSEAPRKQR 121 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH--------G 685 RR ++ G S + + +P +N A Sbjct: 122 SSRRNGKRSEKPVGGSNSSQGAEAIPKTEEAASKPKPRRSRKNNKKPAAAQPAQNAQLVQ 181 Query: 686 FTENYDVSIPPVSTPEM-----------ESSNSSSDPIVKKTRWWKRR 722 + + P + KK+R+ K+R Sbjct: 182 GAQPAQEAQPAQEAQPNQPNQPNQPAQGAQPAQPAKQTPKKSRFAKKR 229 >gi|256997200|dbj|BAI22793.1| mKIAA0536 protein [Mus musculus] Length = 1011 Score = 38.0 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 33/149 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q V + I+ + + + S + + ++S Sbjct: 251 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 310 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ +R + + S S + Sbjct: 311 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 370 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 371 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 399 >gi|320542600|ref|NP_649988.2| CG42795, isoform B [Drosophila melanogaster] gi|318068753|gb|AAF54511.3| CG42795, isoform B [Drosophila melanogaster] Length = 3068 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 6/183 (3%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 + E + V + + + + + + + Sbjct: 1062 ELEDRFNALERKMSVQKSSPSKNKKEPPD----EEESKSTKEPEEPEESEKANEKTSGRQ 1117 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 +D KSE+ E+ +E V + + +++ + + Sbjct: 1118 TPIAKKDSKDSDQKKSETKENQSPTKNQDEKVKVKSPKSEEMIEKETSSNPKEDS--HES 1175 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + N + A G + + S Sbjct: 1176 EAATNKKVEGNRELSSEKGDHKIKEKSEEAPGKAGKETAETKNANVKDSSKKGDSQKNEA 1235 Query: 714 KKT 716 KT Sbjct: 1236 AKT 1238 >gi|313244562|emb|CBY15320.1| unnamed protein product [Oikopleura dioica] Length = 1024 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 54/245 (22%), Gaps = 15/245 (6%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 +I+ V + + V + G I+S S + L+S V Sbjct: 522 QIKEGVDQGKSYVSSAITGTELIKSSDSFESTPLKSP---------GVASESEPPTVTPQ 572 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 + ++ I V + + + + + + P Sbjct: 573 ASDLDDDALMALAKE----IVVPGDKKKQKQATPVPRKLEAEKEKTPSTRARRSRVMPPR 628 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + + E E L P + ++ + R +R RR T Sbjct: 629 EDSSEESSGPEDRLTSPLKPRV--LKKRKQESAKSSEDRPKRIRRGNTPEPTVETTTPSR 686 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + L + + E + Sbjct: 687 PQRTRGGPTSASRSRKTEPSEPKLPDRLTRDETPKGRQTRREGSRATPKVEKTEPKTIKR 746 Query: 711 PIVKK 715 K+ Sbjct: 747 EQRKE 751 >gi|301611388|ref|XP_002935224.1| PREDICTED: WD repeat-containing protein 60-like [Xenopus (Silurana) tropicalis] Length = 1072 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 32/132 (24%) Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + S D ++E + + + + + + R RRR R + Sbjct: 187 ERSSEDVDVERRKSERKHKEVSSEDVDRERRRSERKHRERSKEDADRERRRSERKHRERS 246 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 + S ++ S ++ E + E E S Sbjct: 247 TEDEGRERSEQKHKERSSENVDEERRKSERKTKELSSEDVDWERRRERKHREKYLEDASV 306 Query: 706 NSSSDPIVKKTR 717 + K Sbjct: 307 DGERRRREGKHG 318 >gi|148708948|gb|EDL40894.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast), isoform CRA_a [Mus musculus] Length = 1021 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 33/149 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q V + I+ + + + S + + ++S Sbjct: 261 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 320 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ +R + + S S + Sbjct: 321 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 380 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 381 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 409 >gi|37543028|gb|AAL68925.1| p53-associated cellular protein PACT [Homo sapiens] Length = 1625 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 835 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 891 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 892 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 951 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 952 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 983 >gi|115447101|ref|NP_001047330.1| Os02g0598200 [Oryza sativa Japonica Group] gi|75125337|sp|Q6K5K2|Y2982_ORYSJ RecName: Full=B3 domain-containing protein Os02g0598200 gi|47847640|dbj|BAD22126.1| unknown protein [Oryza sativa Japonica Group] gi|113536861|dbj|BAF09244.1| Os02g0598200 [Oryza sativa Japonica Group] gi|215768515|dbj|BAH00744.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1048 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 19/224 (8%), Positives = 61/224 (27%), Gaps = 9/224 (4%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 R+ + L+ A+ + D+ +K+ +R + N+ Sbjct: 32 RNGDDEEKKYSHHDMKNNLRNDANEEKRKSSDDMRDGDFEEKKKC-----SRHDMKKNLR 86 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + ++ + K + + + + + + + Sbjct: 87 NDAN----EEKRKSSDDMRDGDDEEKKCSRQDMKKNLRNDADEEKRKSSDDMRDGDDEEK 142 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + ++++ +R+R+R+ + D + V + D + Sbjct: 143 KKRSRHDMKKNSRNDADEEKRKRKRKCSDDLKKSVVNDASKEATSHSDWRKNRKAGSDAE 202 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 L NG + +++ +S+ K + Sbjct: 203 QRGKKLLNGDKKAKSRKVTTPFFEKMRKIKMQRTSNQNGEKNMK 246 >gi|315586944|gb|ADU41325.1| 30S ribosomal protein S1 [Helicobacter pylori 35A] Length = 552 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 12/247 (4%) Query: 57 AFVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD--- 105 AFVD G + GFL EI D Y + ++ + ++ Sbjct: 300 AFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN 359 Query: 106 -DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKF 164 + LE + D + Sbjct: 360 RPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGD 419 Query: 165 KRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT 224 + I ++ K + + + + + + ++ G I+ Sbjct: 420 VIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGI 479 Query: 225 NPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVA 284 + + + + E+ G + ++ +++ L R + A N+ Sbjct: 480 DVLIKNEDLNPLKKDEIKIGQEITCMVVAIEKSNNKVRASVHRLERKKEKEELQAFNTSD 539 Query: 285 PHLVYEE 291 + + Sbjct: 540 DKMTLGD 546 >gi|193210031|ref|NP_508662.2| hypothetical protein F35A5.1 [Caenorhabditis elegans] Length = 1987 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 40/163 (24%), Gaps = 7/163 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + T + + A E P+ S + ++ Sbjct: 573 RDPSPKKVAPTAPEKKTPVLAKKEPAGPADSKTKEPEKSKPRDPSPKKAVPAKPVPKTEV 632 Query: 627 -----VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + + + P ++ VV V + + +L E Sbjct: 633 APAAVKKPEPISKPKDTAPKKAEPNSPVVPPTPVKNPVKKWKPPWEDDDAPAKPVSLPEP 692 Query: 682 GAHGFTENYDVSIPPVSTPEMESSN--SSSDPIVKKTRWWKRR 722 P S + + SS DP + K K R Sbjct: 693 EKKTPVLAKKAPTKPDSEAAADPVSGPSSKDPKLAKKAPVKPR 735 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 36/159 (22%), Gaps = 12/159 (7%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + E + + P + E Sbjct: 869 KKAEPNSPVVPPTPVKNPVKKWKPPWEDDDEPTEEVKKPSEPEKKTPVLAKKEPEKPKDA 928 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT- 687 K + R P + + +++ + ++N + Sbjct: 929 PKVAAKPRDPSPKKAVPEKEPAKVAAKPRDLSPKKAIPIPANTQEAPPTPVKNPVKKWKP 988 Query: 688 --ENYDVSIPPVSTPEMESSNSS---------SDPIVKK 715 E+ D PVS PE E DP KK Sbjct: 989 PWEDDDEPAEPVSAPEPEKKTPVLAKKAPAKPRDPSPKK 1027 >gi|189467234|ref|ZP_03016019.1| hypothetical protein BACINT_03619 [Bacteroides intestinalis DSM 17393] gi|189435498|gb|EDV04483.1| hypothetical protein BACINT_03619 [Bacteroides intestinalis DSM 17393] Length = 687 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 20/200 (10%), Positives = 55/200 (27%), Gaps = 9/200 (4%) Query: 506 SVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYI 565 EE + + I V L ++R + + R V++ Sbjct: 31 KKEELVYKILDEQAIAGATKKVAAEKLKEERKVDRQ-QKRTRVTVK------KESTDKVF 83 Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + ++ + ++ + P+ + E + E+ Sbjct: 84 TANKNGDLTKAKAEASVAAAKVQPVAEAVKAPVTEAPKAPVTEKEVAVTATEAPEKAETP 143 Query: 626 GVIRKRRRRRRRRR--PATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 +++ R R+ + V+ + + P I + ++ Sbjct: 144 NSTKRKPGRPRKAKVEEKAPIPAPVPVAKKEEPKKAEPELNFETEAPKVIKKVVVEDSPI 203 Query: 684 HGFTENYDVSIPPVSTPEME 703 E+ + I + T ++E Sbjct: 204 LSEPEDDFIPIEDLPTEKVE 223 >gi|119479549|ref|XP_001259803.1| transcriptional regulator (Cti6), putative [Neosartorya fischeri NRRL 181] gi|119407957|gb|EAW17906.1| transcriptional regulator (Cti6), putative [Neosartorya fischeri NRRL 181] Length = 628 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 38/157 (24%), Gaps = 3/157 (1%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + S + + + I+++ + Sbjct: 225 DSSRDNSRRAKDSKSRQSESIANPKRRSTMNSRDAAYDEEEQLRRAIEESKEDTQPPAED 284 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 RR +R R + H SS + + + + +G Sbjct: 285 IALRRGKRSRSDSEAHKQVTKRQRTSSPSPSAISKPENTESQPASEDESKTKVNGNGTKN 344 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV---KKTRWWKRR 722 + P E+ +DP +K ++RR Sbjct: 345 SRVAPRGHREKPIKETEEPETDPAEIASRKKGKFERR 381 >gi|114661640|ref|XP_001163977.1| PREDICTED: retinoblastoma-binding protein 6 isoform 5 [Pan troglodytes] Length = 1624 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 834 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 890 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 891 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 950 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 951 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 982 >gi|8163703|gb|AAF73811.1|AF154039_1 surface protein PspC [Streptococcus pneumoniae] Length = 684 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 58/232 (25%), Gaps = 16/232 (6%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 ++ L + + V + L K + E + Sbjct: 221 KVKEAELELLKVKAKESRDEKKIKHAEAEVESKQAEATRLKKIK-TDRKKAEEEAKLKEA 279 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 V E+G P + + + D E LP P + Sbjct: 280 VEKNAA------TSEQGKPKRRVKRGALGEQATPDKKENDAKSSDSSVGEETLPSPSLKP 333 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + + K ++ RR T+ + + S V + ++ E + Sbjct: 334 EKKVAEAQKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVKEEA 393 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + E+ + + + KKT +RK Sbjct: 394 KESRNEEKIKQVKAKVESKQAEATRLEKIKTD---------RKKTEEEAKRK 436 >gi|158854005|ref|NP_038858.2| serine/threonine-protein kinase PRP4 homolog [Mus musculus] gi|26350865|dbj|BAC39069.1| unnamed protein product [Mus musculus] gi|148708949|gb|EDL40895.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast), isoform CRA_b [Mus musculus] gi|187954769|gb|AAI41274.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Mus musculus] gi|187954931|gb|AAI41273.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Mus musculus] Length = 1007 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 33/149 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q V + I+ + + + S + + ++S Sbjct: 247 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ +R + + S S + Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 366 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395 >gi|23831386|sp|Q61136|PRP4B_MOUSE RecName: Full=Serine/threonine-protein kinase PRP4 homolog; AltName: Full=PRP4 pre-mRNA-processing factor 4 homolog; AltName: Full=Pre-mRNA protein kinase gi|20330556|gb|AAM19102.1|AF283466_1 PRP4 kinase [Mus musculus] Length = 1007 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 33/149 (22%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 Q V + I+ + + + S + + ++S Sbjct: 247 RRSQEKVGKARSPAEEKMKSEEKGKIKDRKKSPIVNERSRDRSKKSKSPVDLRDKSKDRR 306 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + + R+ +R + + S S + Sbjct: 307 SRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKLRDKSRRS 366 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 367 RSPLLNDRRSKQSKSPSRTLSPGRRAKSR 395 >gi|17554518|ref|NP_498982.1| hypothetical protein R08D7.1 [Caenorhabditis elegans] gi|267547|sp|P30640|BUD13_CAEEL RecName: Full=BUD13 homolog gi|3878934|emb|CAA78047.1| C. elegans protein R08D7.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 458 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 44/183 (24%), Gaps = 9/183 (4%) Query: 533 NQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDK 592 +++R I + + V F + + V A + S +P K Sbjct: 58 DEEREEIEVLKQSVKKAKVVHG--------FK-QTFAEVDAPKVIKPEPLSPDNSPPRGK 108 Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + P K ++ RRRR Sbjct: 109 RQRHDSDNSPPRPSRKRNDSDNSPPRPSRNRHDSDKDNSPPRRRRHDSDNSPPRPSRKIR 168 Query: 653 VSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 S S ++++ N + ++N P S + S P Sbjct: 169 EESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPR 228 Query: 713 VKK 715 + Sbjct: 229 KSR 231 >gi|198438531|ref|XP_002131826.1| PREDICTED: similar to R3H and coiled-coil domain-containing protein 1 [Ciona intestinalis] Length = 1535 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 48/174 (27%), Gaps = 6/174 (3%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDI 615 E + + K + Q S + + KS+S + Sbjct: 466 PASTSSHHSKEGKMQRSSTMPRSTKEPAKKQRSSSKGRSQTLKGPPVSTGRSKSQSTKKH 525 Query: 616 QDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM------YME 669 ++ ++ ++R++P + S V+S +++D S E Sbjct: 526 PAPPPPQKEEEKPKRSSSSKQRKKPTSLDEPKKHSSVVTSTDDLLDASNSTLYHPLPDQE 585 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + ++ + PP + + + RRK Sbjct: 586 QPSTSKKKSTKEKQKKHSQQSSPATPPSDPNAISPVTCDGTAQTEVSGTLSRRK 639 >gi|188995494|ref|YP_001929746.1| transcription termination factor Rho [Porphyromonas gingivalis ATCC 33277] gi|188595174|dbj|BAG34149.1| transcription termination factor Rho [Porphyromonas gingivalis ATCC 33277] Length = 658 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 9/170 (5%) Query: 532 LNQKRA-TIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 LN+K + G + K I K QA+ G + Sbjct: 9 LNEKAEAELAAIAGELG-----IANAGSMPKQELIYKILDEQAISVAGVRKEKQKTTEDR 63 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + ES + + +++R R R+ A + Sbjct: 64 HTERRKPGRPRKNAEEEAPESKDVAAAPAEPNDEEAQAKRKRGRPRK---AAEEIAEETR 120 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 DV + + E + + ++P + Sbjct: 121 EDVQQLVALAAAEETNATEKESAGRKPAAKTSTASPAKAPAKALPRPAET 170 >gi|123425367|ref|XP_001306802.1| hypothetical protein [Trichomonas vaginalis G3] gi|121888396|gb|EAX93872.1| hypothetical protein TVAG_439750 [Trichomonas vaginalis G3] Length = 1448 Score = 38.0 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 19/187 (10%), Positives = 43/187 (22%), Gaps = 11/187 (5%) Query: 534 QKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKN 593 +++ E + I + +D+ + V T V + Sbjct: 276 EQKNNTNNSEDKIDEQIKISEKNNNSDQN-----SKKSEEKVETSGPVLIPIVSRDIVPT 330 Query: 594 IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDV 653 I + E+ E + + EE + ++ + Sbjct: 331 ISEKNNKSDQISNEMIENSEPKNNTVKQEEEGNDKTTISGKNNNSEQNPKQNEEKIELSE 390 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS------IPPVSTPEMESSNS 707 I + + +N + + E D S I N+ Sbjct: 391 PKNNKSIKQEEENSDLKTKSDKNNNSDQNSRQNEEKADTSKLVLIPISSSDKTPNSEKNN 450 Query: 708 SSDPIVK 714 + K Sbjct: 451 QNSTETK 457 >gi|284048775|ref|YP_003399114.1| hypothetical protein Acfer_1440 [Acidaminococcus fermentans DSM 20731] gi|283952996|gb|ADB47799.1| hypothetical protein Acfer_1440 [Acidaminococcus fermentans DSM 20731] Length = 1056 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 34/101 (33%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 ++ + G QA S K E ++ PK + + EE+ ++ Sbjct: 159 EVMEMPYPEGKQHQAESLLKKKEKEAREAQNTKEPKEDKESGGEPEESREEAPAEQPRKA 218 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 R R R + + + + +++ ++ ++ Sbjct: 219 RNGRNRDKGARNRNGRGKKNAAPEPAPEEEAQPEALKEAET 259 >gi|86141212|ref|ZP_01059758.1| transcription termination factor Rho [Leeuwenhoekiella blandensis MED217] gi|85831771|gb|EAQ50226.1| transcription termination factor Rho [Leeuwenhoekiella blandensis MED217] Length = 582 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 39/134 (29%), Gaps = 2/134 (1%) Query: 526 DVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDS 585 ++ L K ++ + + + V + + ++ K + Sbjct: 17 EIAKGLDIPKYRSLKKLDLVYKVLDHQAADPKAVAEVIEETSSETPTKSKAPQKKTQKSA 76 Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 + +D + K S ++ E +R+ R+ + ++D+ Sbjct: 77 PKKNTRSASNDEKKDSSKDTPQKESSQKNEAKTSGKTEEKTEKPQRKPRQ--TKASSDND 134 Query: 646 DAGVVSDVSSIQNV 659 + + S N Sbjct: 135 NTKQSDNNRSKNNR 148 >gi|325116528|emb|CBZ52082.1| putative protamine P1 protein [Neospora caninum Liverpool] Length = 2108 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 6/137 (4%) Query: 593 NIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD 652 + E + D E G + R++R R+ Sbjct: 1627 ESRRQAGADVNAEEDGEEDGDGEADGEEDREVDGAEERERKKRDERKGPETDEKERKRGR 1686 Query: 653 VSSIQNVIDDSFDMY---MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + S P D + G+ + + + + E + Sbjct: 1687 SGRCATRRNRSGSASWTTASPPDASPRRSPSAGSAKRSRRLKSASTSLRPGKEEKGGKEA 1746 Query: 710 DPIVKKT---RWWKRRK 723 ++T RR+ Sbjct: 1747 SQEERETEARGVRTRRQ 1763 >gi|313220729|emb|CBY31571.1| unnamed protein product [Oikopleura dioica] Length = 2395 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 10/128 (7%), Positives = 26/128 (20%), Gaps = 6/128 (4%) Query: 578 GHKVGSDSQAPSYDKNIECVWQDE----ALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 S + P + + DE P E + +E+ + + Sbjct: 6 DAIADSPTPPPPQENEDNEMEVDENGLKTEKPEEAQEPTPRVNGANEAEKENSEEQAKEA 65 Query: 634 RRRRRRPATDHHDAGV--VSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 + A + ++ + + + + D Sbjct: 66 EVKASDEAKEPEESSSQELEKPDLPTTKAKRRPSEGTKATATPPTKRPRRSVPPKKKKAD 125 Query: 692 VSIPPVST 699 T Sbjct: 126 EEAEKTDT 133 >gi|312217426|emb|CBX97374.1| hypothetical protein [Leptosphaeria maculans] Length = 764 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 48/170 (28%), Gaps = 10/170 (5%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD--------EALLPIPKSE 610 + + ++ S + + + + ++ + K Sbjct: 87 EQEDYNMDSSSSEEDVEGADEDDAGEKELRKAERQERNKKRKATTNPFAARVAAATRKKV 146 Query: 611 SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 L+ + S+ + +++ R D V + ++ ++ Sbjct: 147 KLDVPGASDAQSRSSFGRPRPKKKSERASWIPTVEDGPVRTSSRKQTVANKETTMAKLKE 206 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT--RW 718 D + L PP++ E + + ++ I KKT RW Sbjct: 207 KDRRRDDTLAMMKAAEARKAKAKEPPLTQAERLAEAARNERINKKTLHRW 256 >gi|198432875|ref|XP_002131319.1| PREDICTED: hypothetical protein [Ciona intestinalis] Length = 617 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 48/177 (27%), Gaps = 5/177 (2%) Query: 547 GVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 G S++V I L I+ + V + + + + K + Sbjct: 112 GKSVDVGISFPLTKTSMEIDARKKLANPVIEKFENENSIELGAMRKKSSKQRESSPCSND 171 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD-----HHDAGVVSDVSSIQNVID 661 S S +S+ +R+++ + ++ + + VS + N + Sbjct: 172 ESKSSKGKSNPEGASGKSSRSLRRKKLKEQKNKEEPQAAASISREETPVSKTKKLMNKEN 231 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + T + + + + + D KK + Sbjct: 232 KRVEQNQTRQKKTTSTKTTDKPEDIEQQKEAKKLLTDEVVAKIAEEFDDKPEKKQKT 288 >gi|169777047|ref|XP_001822989.1| transcription factor TFIIIB component [Aspergillus oryzae RIB40] gi|83771726|dbj|BAE61856.1| unnamed protein product [Aspergillus oryzae] Length = 572 Score = 38.0 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 33/147 (22%), Gaps = 4/147 (2%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + P + E P+ + + E + + S + R +R Sbjct: 124 SQPPNATPAEPTPLLSIEVAPDESGEDRAPVEEPQLSETLVNEEPSLVAETPAEARPSKR 183 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 ++ Q + + + E+ Sbjct: 184 QKTNAEPATPALESQRLTGPPQLATPPATQTSTNEETTESRDTTESQPPAEQNRKTT--- 240 Query: 696 PVSTPEMESSNSSSDPIVKKTRWWKRR 722 S S + + +TR K R Sbjct: 241 -KSRKRKPSKDVNGGDTTTRTRERKPR 266 >gi|289597701|gb|ADD12286.1| TashAT2 [Theileria annulata] Length = 279 Score = 38.0 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 12/144 (8%), Positives = 36/144 (25%), Gaps = 2/144 (1%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 T + D + + + +E + + E + +E + Sbjct: 124 IQTGSIDTQTDIQEVEDIETQTDIQEVEDIGVQTIGNFSDQPEQPKRKPGRPRKQEQPEL 183 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +++R R R+ +P + Q + + + T Sbjct: 184 PKRKRGRPRKHKPEPEQPKRKRGRP--RKQKPQAEQPKRRPGRPRKHKTEPESDHSEEST 241 Query: 688 ENYDVSIPPVSTPEMESSNSSSDP 711 + + + + + P Sbjct: 242 QPHPQEQETEDSIKALGPSPEKRP 265 >gi|226322553|ref|ZP_03798071.1| hypothetical protein COPCOM_00325 [Coprococcus comes ATCC 27758] gi|225209047|gb|EEG91401.1| hypothetical protein COPCOM_00325 [Coprococcus comes ATCC 27758] Length = 725 Score = 38.0 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 63/234 (26%), Gaps = 10/234 (4%) Query: 480 TTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATI 539 T + C C G + ++ +E L +Y V ++ + N+K + Sbjct: 469 TGEPCPVC---GSVHHPCPAQMTEGAPEKEELEKYRKETADVEKKTNDASFKANEKLVQL 525 Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQ 599 E S+ + ++ IEK + + + E V + Sbjct: 526 KALEEEIQKSVK-SFDSSIQEEE--IEKSLALIGQQMDALEKSEKELEKKLEVAKEAVAE 582 Query: 600 DEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV 659 + L ++E E Q +E R + R + + V + + Sbjct: 583 KQKL----EAEIPELEQMQKKLQEEEQERRDQLLVSERDKANAEEQAVKVRGKLEFPEKA 638 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + ++ L F + + + + + Sbjct: 639 EAEQKIKELDKQKKEIDKDLNVAQKAFQDCSQSVEAAKTKKKTLEKQIAGNKET 692 >gi|126332161|ref|XP_001367572.1| PREDICTED: similar to KIAA0155 [Monodelphis domestica] Length = 1168 Score = 38.0 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 5/144 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN----IVSEES 624 + + GH S+S + D + V + P E SEE Sbjct: 1024 EDKLKIADEGHARNSNSDSDDGDLRKKRVMSESDSDENPNQSGSEAGSPRRSSMQQSEED 1083 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSS-IQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R +RRR +D+ S+ N + + + E A Sbjct: 1084 SDSDRSAPKRRRSVSEQSDNESVQSGRSHSAGSDNESRPASPSADSDRESERASDNEASA 1143 Query: 684 HGFTENYDVSIPPVSTPEMESSNS 707 G + + E S +S Sbjct: 1144 RGSGNDSEPEASNNEASERGSDDS 1167 >gi|313227384|emb|CBY22531.1| unnamed protein product [Oikopleura dioica] Length = 1556 Score = 38.0 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 54/246 (21%), Gaps = 17/246 (6%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN-- 551 R S L +L E + +K + + Sbjct: 82 RRVSECPLQMLAQAAEDAGRAETAKKRKEDEKRAADTSKKEKELELQRVKQLQEKKKQDA 141 Query: 552 VVIGIELADKLFYIEKGSPV---------QALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 + E F +K + ++ + + +++ Sbjct: 142 IKAEQE-RQAEFRRQKMEEARLLDEARKLDNEKKEVRRREEAAKLALEAEAKQKALREKQ 200 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + +++D + + RKR+ R R + A + Sbjct: 201 IAEEKRQRAIKDAERKAAEKRKLEEERKRQHRERAQLQALLEQKRQQARKLEEKLQKERA 260 Query: 663 SFDMYMEPSDITNHNLLENGAHGFT-----ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + E + A E S + + KK Sbjct: 261 AKRKLAEEKEAKAKKEALERAKRDALRQIEEEEKKSAERQKQKKARERAAKDLEADKKRE 320 Query: 718 WWKRRK 723 K R+ Sbjct: 321 AAKERE 326 >gi|310792266|gb|EFQ27793.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001] Length = 866 Score = 38.0 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 28/296 (9%), Positives = 82/296 (27%), Gaps = 25/296 (8%) Query: 395 IEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKLKESLKKDRARV 454 AL ++ + R L + + G +V M +N V + + D+ + Sbjct: 326 QPGNALGLHVTQVRILLRALAMLKVGGRVVYSTCSMNPVENESVVAAAIDRAGGPDKVEI 385 Query: 455 QVGAISNF-GLL--------EMSRQ----RIRSSVLESTTKVCTYCKGAGYIRSQSSVAL 501 V S GL+ ++ + + ++ TK T G I + Sbjct: 386 -VDCSSELQGLVRAPGMRKWQIMDKSGRLWSSQAEVDEYTKSSTDGIAPGRIVDTMFPPV 444 Query: 502 S--------ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 + R + Y Q + + + + + G + Sbjct: 445 EGSVCADLPLERCMRVYAHQQDTGGFFITVLQKKAEVKIRPEDQKVDDAAKSNGATAAAT 504 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 E + E+ + + + P + + + + ++ Sbjct: 505 PAAENDTEK-KSEEQTEEKTEAAPAATDEAAEAKPEEKIEEKATTAEAEVAEQDATNGVK 563 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 +++ ++ T ++ + + + + V ++ + ++ Sbjct: 564 RAREDETADGETQET--KKPKLEASQEKPKRSNRNIHGQVEEPFKYLNPAHEVIKN 617 >gi|167999845|ref|XP_001752627.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696158|gb|EDQ82498.1| predicted protein [Physcomitrella patens subsp. patens] Length = 982 Score = 38.0 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 5/167 (2%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES----LEDIQD 617 + + ++ S A E D L + E E Q+ Sbjct: 809 EYRMNSTQSHHIAAQKEKQLESMRDALGLKNVKEGEASDRELQEQKRQERIMAREEKEQE 868 Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 N + + +R+++ RR H + E + Sbjct: 869 NREKQAAIEEEERRQKKELRREEKLRHREQQEEERKQRKLERKVRREQDEQERYQKGKES 928 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMES-SNSSSDPIVKKTRWWKRRK 723 E D + ES ++ R R+ Sbjct: 929 RELMEPRESKEKRDQEYEERDHKKKESRERRKNEDEEPHERIKDPRE 975 >gi|309366565|emb|CAP21226.2| hypothetical protein CBG_24674 [Caenorhabditis briggsae AF16] Length = 1470 Score = 38.0 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 4/109 (3%) Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 ++D+ + E +RRR R + + V + + +PS+ Sbjct: 1000 VEDDFIEMEDDSSDEERRRYTRETKESRRSSKQATKRRTP----VRESAKRHSPKPSERA 1055 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + PP S P M ++ + R+ Sbjct: 1056 GNVRKSKSTEDRRRRSTEDTPPPSAPPMSEERRKMLKRQERMHKAEERR 1104 >gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum] Length = 1796 Score = 38.0 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 2/133 (1%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 I + + + P + + + PK + S+E+ Sbjct: 238 ISEVQGSHKPDKADEQDAEQNNTPQQKRRRKKHRPKVVIEGQPKRTPKPEKNQQHSSKET 297 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 TG KR+ RR + + V ++ Q+ + S ++ N + A Sbjct: 298 TGE--KRKYIRRNKVEEPPGTPSDKVDGMTCPQSQLPSSREIQRAKRRYVRRNKVNKPAP 355 Query: 685 GFTENYDVSIPPV 697 E+ + P + Sbjct: 356 NPAEDETIDPPNI 368 >gi|119196889|ref|XP_001249048.1| hypothetical protein CIMG_02819 [Coccidioides immitis RS] Length = 646 Score = 38.0 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + Q I +E +P+ E+ + +R Sbjct: 378 AEAEAELAQRQKRRTSGRIPEASGEEKPGQLPEQFRGEERPGAVPGRREPAREAERTEES 437 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 +R R +AG+V+ V D ++ + T +E + + Sbjct: 438 KRFREG--DKEAGLVAGVGQPPRKESDREEIPEQFRAETPGQPVEERPQAPVQERVAGMA 495 Query: 696 P--VSTPEMESSNSSSDPIVKKTRWWKRR 722 P E + K++RW +RR Sbjct: 496 PGAEEPVEAVPPPHEGEEAHKQSRWARRR 524 >gi|321248433|ref|XP_003191126.1| RNA binding protein [Cryptococcus gattii WM276] gi|317457593|gb|ADV19339.1| RNA binding protein, putative [Cryptococcus gattii WM276] Length = 364 Score = 38.0 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 36/135 (26%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E G + + ++ + + A + Q ++E+ Sbjct: 107 VEYGKSDEEAAADREARIEKRKETRKARDAKKKAETAAAGATEGEAQAAEGQQEGEAKET 166 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +K R R+ +RR + D + S+ + ID + + Sbjct: 167 APKAKKSRARKPKRRQPGEGDDEAHEGEESASKARIDAEGSDEADEASQEKKAAKPRQPR 226 Query: 685 GFTENYDVSIPPVST 699 E S Sbjct: 227 KPREKKLQISEEDSE 241 >gi|2896142|gb|AAC03120.1| Tpr1 [Schizosaccharomyces pombe] Length = 1039 Score = 38.0 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 3/221 (1%) Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 + A+ L + E + + ++ + + K T + E I + Sbjct: 809 NFAMQQLDASIETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSVA 868 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP---IPKSESLED 614 + I++ + + + Q E E +L + S +D Sbjct: 869 AKLEDARIQREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDD 928 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + E+ +G +K+ R++R+ + + D+GV D + + + Sbjct: 929 MSLSDDEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTKKRRVNRRVI 988 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + N + + + ++ + + K+ Sbjct: 989 SEEYTFDQDSDAEGNQEEEVSRTIEEKQDNDITDNQDDNKE 1029 >gi|67540810|ref|XP_664179.1| hypothetical protein AN6575.2 [Aspergillus nidulans FGSC A4] gi|40738725|gb|EAA57915.1| hypothetical protein AN6575.2 [Aspergillus nidulans FGSC A4] gi|259480148|tpe|CBF71015.1| TPA: putative Myb-like transcription factor (Eurofung) [Aspergillus nidulans FGSC A4] Length = 573 Score = 38.0 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 12/156 (7%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV-- 627 P +Q P+ ++ E + E +SES + S ++ Sbjct: 204 PQPEEELAQLATPPSTQIPALEERTESRDESEVPGLARRSESAPKKKGRRASRSTSNDAG 263 Query: 628 --IRKRRRRRRRRRPATDHHDAGVVSD--------VSSIQNVIDDSFDMYMEPSDITNHN 677 ++R+RR R R P D + ++ + + + ++ Sbjct: 264 KIKKERKRRTRNREPTPDGAELIEIAPAVVKMSDLCKDTRTGKRSKRETELRAHELAEAE 323 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 ++ G ++ + ++ ++ + S P Sbjct: 324 RKKSQQEGGQKDETAAKQTLNESVLKEDQTGSTPNK 359 >gi|332016542|gb|EGI57423.1| Titin [Acromyrmex echinatior] Length = 17174 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 78/677 (11%), Positives = 192/677 (28%), Gaps = 59/677 (8%) Query: 82 PFSDRQAL----LKESNIAQTDSEAVADDVTHGDV-------TIPNDHSLEEVAPIANFS 130 P D + + + + + + A+ V D+ I +D L+ A Sbjct: 5237 PKPDLEKINLKPVIKEKENTREIDKTAEYVEQEDITLLQVSTEIYDDIKLKPDARKKLVR 5296 Query: 131 QETEEESIISANNDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERG 190 +E + I++ + E K ++ K + ++ + Sbjct: 5297 EEKHIDEDITSYKEKEDTTLLKVTSKHETNIHKKIKKQEDMPQEKPQSTTWMEEKIILKR 5356 Query: 191 NKGAAVTTYLSLAGRYSVLMPNTSKGETISRKIT-NPVDRKNLKEIARGLEVPAGMGVIL 249 K L P + + I +K + VD K++K + L I Sbjct: 5357 TK-PEQKEIYKETLEEVSLKPTSRLYKVILKKESVEKVDLKHIKIESTDLTGIVQQENIP 5415 Query: 250 RTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISE 309 + IE+ +D E ++ + + + + I+ +++ Sbjct: 5416 YHEEEDKIIIEMDKDVESTKKVSSEKKSKIPYTEKEDTTILDIDTTDNIIKKSKKEEVKM 5475 Query: 310 IIVSGEKGYREAKDFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRG 369 V G+K + + V+ ED + + SL Q +++ Sbjct: 5476 PWVRGKKARDKKEVEEIRTSQIIKPEVKLEEDKPTEISEAPWRRKSKSLIQKKISETETD 5535 Query: 370 YVIINQTEALVSIDVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFID 429 ++ E S + ++ T +A E D +++ Sbjct: 5536 KTKVDIKEI-------SEATWQKSEKSKTTKSITQKAQIE--------DFTSVVLKPAKR 5580 Query: 430 MEEKKNNRSVEKKLKESLKKDRARVQVGAISNFGL------LEMSRQRIRSSVLESTTKV 483 E+ + + E L + + + +++ + LE+S ++I + TK Sbjct: 5581 HEKLEEQKIQEITLHPVKQLPKEKEVSEDLTHTPMTKETSKLEVSSEKIDEMNRDIFTKK 5640 Query: 484 CTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYE 543 + + + L+ + E L II + +L R E E Sbjct: 5641 ID-------VPWRRAKKLTQIEQKPEDLQLKPIKKIIKPEEAQPEEVILKHVRKLPKEEE 5693 Query: 544 ARFGVSINVVIGIELA--DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 ++ +++ + ++ + ++ + + + K+ E Sbjct: 5694 SKDEITLKSMQKEKVEEKPEQIRLKPVKKMDKPEEPTPEQIVLKPVRKFPKDEESKEITL 5753 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRR----RRRRRRPATDHHDAGVV------- 650 + K E + ++ + + R+ P + + Sbjct: 5754 KPVQKEKVEEKPEQIQLKPVKKIEKPEEPKPEQIVLKPVRKLPKEEETKEEITLKPVEKE 5813 Query: 651 -----SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 + + V +P I + + T+ P E Sbjct: 5814 KVEEKPEKIRFKPVKKIEKPEEPKPEQIVLKPVRKLSKEEETKEGITLKPVEQKKVEEKP 5873 Query: 706 NSSSDPIVKKTRWWKRR 722 + +T W ++R Sbjct: 5874 EEIQLKPIIETPWRRKR 5890 >gi|326332904|ref|ZP_08199161.1| transcription termination factor Rho [Nocardioidaceae bacterium Broad-1] gi|325949262|gb|EGD41345.1| transcription termination factor Rho [Nocardioidaceae bacterium Broad-1] Length = 602 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 31/147 (21%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 ++K + A+ + AP+ + +++ E + Sbjct: 44 SMKKAQLIDAIKAAQSSRAQSAPAPAEKAEKPAAEKTADKPAEKPADTAEKPAEKSAEAA 103 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 G +R RR+R + + G S G Sbjct: 104 DAGNEGAQRPRRQRNQNKSAGQAQGGQSGQGGQSGQGGQGGQSGQGGQGGQGGQPAAGGQ 163 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSD 710 + + S Sbjct: 164 NKGPAKAGQPAAEKKNEDAPKERPSES 190 >gi|282910100|ref|ZP_06317908.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282326166|gb|EFB56471.1| immunoglobulin G binding protein A [Staphylococcus aureus subsp. aureus WW2703/97] Length = 528 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 44/176 (25%), Gaps = 8/176 (4%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ ++ E + + L + D+ P + N + +D Sbjct: 306 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDGN 360 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ N +E K + + N Sbjct: 361 KPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGK 420 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 D N + G T N + ++ + N +D + K Sbjct: 421 EDGNKPGKED---GNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 473 >gi|156550023|ref|XP_001604707.1| PREDICTED: similar to GA10060-PA [Nasonia vitripennis] Length = 542 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 46/179 (25%), Gaps = 10/179 (5%) Query: 537 ATIVEYEARFG---VSINVVIGIELADKLF--YIEKGSPVQALVNTGHKVGSDSQAPSYD 591 I + E ++IN E+ L + + + N + P Sbjct: 99 NHIRDIERLLKGAHITINARSDEEVEVDLIMDKLSRATASTYKFNEPRGENGERTGPVGT 158 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR----RRRRPATDHHDA 647 V E ++ + E +++ RR+ R+R + Sbjct: 159 TYRRVVPAQEINASERDQFWQKEEIEEKQRLEQERARQEQNRRKLEEEVRKREEAESKVR 218 Query: 648 GVVSDVSSIQNVIDDSFDMYMEP-SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 + E ++ N N+ N + +++ S + Sbjct: 219 EQKITTREDITTRQRQAEQRAEEIKNLRNQNIAANDRNSDSDDEPKSRSDELRRQRSKE 277 >gi|51593355|gb|AAH80598.1| PHF20 protein [Homo sapiens] Length = 550 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|24584968|ref|NP_609877.2| nucampholin [Drosophila melanogaster] gi|74869383|sp|Q9VJ87|CWC22_DROME RecName: Full=Pre-mRNA-splicing factor CWC22 homolog; AltName: Full=Nucampholin gi|22946749|gb|AAF53667.3| nucampholin [Drosophila melanogaster] gi|261260015|gb|ACX54942.1| LD29051p [Drosophila melanogaster] Length = 1330 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 44/166 (26%), Gaps = 8/166 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + S + + + + + + E D + Sbjct: 1132 QRRRDNSTGRERNRENSSYDRERNRGNSSYDRERKRGNSSYDRERNRESSYDKERKNRNA 1191 Query: 626 GVIRKRRRRRRRR-------RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ++R+R R R R + + + S S + D + Sbjct: 1192 VAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGERSDR 1251 Query: 679 LENGAHG-FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E G ++ + S + E S+ + K R R + Sbjct: 1252 GERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERERDRDR 1297 >gi|317420085|emb|CBN82121.1| Serine/threonine-protein kinase PRP4 homolog [Dicentrarchus labrax] Length = 1018 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 42/173 (24%), Gaps = 16/173 (9%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + ++G + + + + +S+S + + S++ Sbjct: 191 RNGEQRQRGSSGKPISPRGRKSGKSRRDSTEGSKSSTKRRSRSKSADKLGQAKESKQDKV 250 Query: 627 VIRKR------RRRRRRRRPATDHHDAGVVSDVSSI----------QNVIDDSFDMYMEP 670 + R R R R D+ S + + + P Sbjct: 251 TKTTKDTGVKDRGRGRSRSKDRKRSDSADRSKERTRKSNSPSSWRGEQKGSRTDKRSTPP 310 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 D + + S + + + S D K R+ Sbjct: 311 RDDRPNQERASRRSRSPGRERPSRSDADRDKRPAKSPSKDASSGKENRSPHRR 363 >gi|121698847|ref|XP_001267826.1| DNA ligase Cdc9, putative [Aspergillus clavatus NRRL 1] gi|119395968|gb|EAW06400.1| DNA ligase Cdc9, putative [Aspergillus clavatus NRRL 1] Length = 879 Score = 38.0 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 46/181 (25%), Gaps = 20/181 (11%) Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 F +K A S S + + + V +P + + + + S Sbjct: 35 FSSKKDKKSDAAAEEPSSEQSPSVSTAVAELKNGVDVKMEDIPKEAAVAQPNGSPSAKSL 94 Query: 623 ESTGVI---------RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 + ++RRR+ R A S P+ I Sbjct: 95 KREKSSDEDSDSDIQPAQKRRRKSSRGAEAAPTVRKKSPSPKSPKKRGGKAKEASPPAVI 154 Query: 674 TNHNLLEN-----GAHGFTENYDVSIPPVSTPEM-ESSNSSSDPIVKKTRW-----WKRR 722 + E E VS PE+ + +K T WK R Sbjct: 155 RKSSGEETPEKESELSDEEELELVSDEEEDKPEVMTKTMEKVQATLKATGTEPYPDWKPR 214 Query: 723 K 723 + Sbjct: 215 Q 215 >gi|163853261|ref|YP_001641304.1| RNA-binding S4 domain-containing protein [Methylobacterium extorquens PA1] gi|163664866|gb|ABY32233.1| RNA-binding S4 domain protein [Methylobacterium extorquens PA1] Length = 669 Score = 38.0 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 27/172 (15%), Gaps = 14/172 (8%) Query: 565 IEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+ P + H+ + +D P + + + Sbjct: 392 VERLQPSPEKPAPEPHRRVRFRNEEERSAPRDRAREDRPRQDRPGQDRPREDRPRSEGPR 451 Query: 624 STGVIRKRR-------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 +R R RRR + E Sbjct: 452 ENRARDERPGRDEFRRGAPAGDARPRRREAGEAAPAERRGPPRERPSDFEGRPPRERSEG 511 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + R Sbjct: 512 RPQRDFHGDSRERGEGAPRRERPSEGRPPERRGPPRDRPRAAEGERPARPPR 563 >gi|77360046|ref|YP_339621.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis TAC125] gi|76874957|emb|CAI86178.1| Electron transport complex protein rnfC [Pseudoalteromonas haloplanktis TAC125] Length = 846 Score = 38.0 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 52/235 (22%) Query: 467 MSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSD 526 ++ + + E C C Y+ + R + + + A I + Sbjct: 399 FAKSKEYDKLQEHNLFDCIECGACAYVCPSEIPLVQYYRVAKVEIKEQQAEKIKADRAKE 458 Query: 527 VVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQ 586 + E + R V E + + A + V + Sbjct: 459 RFDARKERLDREQAERQNRHKRKPAVKTPDEKQKVADALARVKSKSANSDEKSAVAAAIA 518 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 K + + + ++ +++ ++ A Sbjct: 519 RAKAKKQQGDALEPDNSEVAKERALRKEQARQYKEQKAQSDEPASPDDKKSAVAAAIARA 578 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 + + D P D + A + ST + Sbjct: 579 KAKKAAQLANAESTTDDAPQNEAPVDDKKAAVAAAIARAKAKKAAQLADAESTTD 633 >gi|324502334|gb|ADY41027.1| RNA polymerase-associated protein CTR9 [Ascaris suum] Length = 1143 Score = 38.0 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 30/134 (22%), Gaps = 10/134 (7%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 Q + + S S + + ES E + T Sbjct: 1007 TKQKSKVKSREFVASSDDSSDEGANKPSTTAHRSSGSEGGESPEPARITGS---DTSEEG 1063 Query: 630 KRRRRRRRRRPATD------HHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 RR RR +D H + S ++ S D + Sbjct: 1064 DRRARRSSSEQESDGERDVSRHRKTSDNSSESAEDRALPSSDSDDAAEASPPSKPKKKRV 1123 Query: 684 HGFT-ENYDVSIPP 696 E D PP Sbjct: 1124 VSSGDEESDARTPP 1137 >gi|281202975|gb|EFA77176.1| GRAM domain-containing protein [Polysphondylium pallidum PN500] Length = 1082 Score = 38.0 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 20/223 (8%), Positives = 50/223 (22%), Gaps = 13/223 (5%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 + S + + + + ++ E E + + + Sbjct: 730 LTSSESFNKNQKEKDGSAHHQHKDKEKTKKSRKSNSNVAEELTKSVEEIEVQAAKRVEI- 788 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 + + + + + + E L+ +ES Sbjct: 789 -------PKIAFDNLHDSVIVEPD-LPEVTITTTTTTTTAVTNSQTPEQLVDSNPNESAT 840 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSD--VSSIQNVIDDSFDMYMEPS 671 E R+RR +T + G + S + + + P Sbjct: 841 PTSVRSPPNEDDSSNELGETRQRRH--STSNSSPGKHNPLVDSFKETMSPRVDLIPTSPK 898 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + N V V++P+ E + Sbjct: 899 QQLDGGSNNTDTEKLEANNSVPSYLVTSPKAEKDREQLKEQRR 941 >gi|194746402|ref|XP_001955669.1| GF18880 [Drosophila ananassae] gi|190628706|gb|EDV44230.1| GF18880 [Drosophila ananassae] Length = 946 Score = 38.0 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 28/127 (22%), Gaps = 3/127 (2%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + S D ++E+ D+ +KR + Sbjct: 614 PPPRRQESPPVRKPQDSQSRKHQEEESFGKKRPDSPTRKRLDSSGRRPQESPNKKREESQ 673 Query: 636 RRRRPAT---DHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 R+R + DA S DS + S + + + Sbjct: 674 ARKRTDSLNKRSQDAPSKKRQDSPNRKQQDSVAGRRQGSPDKKRRDSPDRKRKDSPDRKR 733 Query: 693 SIPPVST 699 P Sbjct: 734 KDSPDRK 740 >gi|157116780|ref|XP_001658632.1| hypothetical protein AaeL_AAEL007747 [Aedes aegypti] gi|108876313|gb|EAT40538.1| hypothetical protein AaeL_AAEL007747 [Aedes aegypti] Length = 478 Score = 38.0 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 13/152 (8%), Positives = 35/152 (23%), Gaps = 1/152 (0%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 + + + + + + D P + E Sbjct: 323 KKAEIPADADNVSDE-ELPAPKKAEIPEDADNVSDEDLPPPKQAELPEDTENVSDSELPV 381 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 ++ + VS+E K+R+R+ + + + + Sbjct: 382 AKKADLPADTDNVSDEELPDSAKKRKRKASELEDGEGSNKKKDPEGGKGEKPSKADAKEK 441 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 E S ++ A E + + Sbjct: 442 KESSAKRKLEKDDDKAEKSGEAPEKKTKVDAP 473 >gi|332845303|ref|XP_001140720.2| PREDICTED: putative NPIP-like protein LOC613037-like, partial [Pan troglodytes] Length = 392 Score = 38.0 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 28/130 (21%), Gaps = 5/130 (3%) Query: 586 QAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 +P + E + P + ++ +R+R D Sbjct: 265 TSPLATQEAEAEKPPKPKRPRAADVEPSSPEPKRRRFGDVEPSSRKPKRQR-----ADDV 319 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 D + +D S ++ D S + Sbjct: 320 DPSSRKPKRQRADDVDPSSSKAKRRRADDVDPSSRKPKRRRADDVDPSSSKPKRRRADDV 379 Query: 706 NSSSDPIVKK 715 SS ++ Sbjct: 380 EPSSRKPKRR 389 >gi|308235281|ref|ZP_07666018.1| anchor domain-containing protein [Gardnerella vaginalis ATCC 14018] Length = 976 Score = 38.0 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 30/152 (19%), Gaps = 6/152 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + + Q D + K +S + + E+ Sbjct: 668 FKKDEPKDPKPNTEPKNPQPKHEDPKDPKQNPNPKDPKKDKPKSKDPKPKDPNPEKDKPK 727 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLEN 681 + ++ TD D V + + D + Sbjct: 728 DPDNKPKQNPEPKKTDPKDYNPVKPDTPKSPDPKKDDPKPKDKPNNPNYQDRDVPDTKPE 787 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 TP+ S DP Sbjct: 788 DPKKPDNPTKPKDDKSDTPKEPESKEPKDPKP 819 >gi|195565446|ref|XP_002106312.1| GD16804 [Drosophila simulans] gi|194203686|gb|EDX17262.1| GD16804 [Drosophila simulans] Length = 2502 Score = 38.0 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 49/205 (23%), Gaps = 30/205 (14%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 I + + +G V ++ + S + Y K + + + Sbjct: 642 KKIPNEVESNFVTEKIIDCRGKTVVEKISQRPRTPSPTTPKKYTKPSQKIPERVPETESE 701 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRR------------------------------RR 637 + E S T +RR R R+ Sbjct: 702 PEKDSESETKKKTSVSVTKTETERRNSRTTKTKQPLPLKEPQSKVPAAKSPRKDSLTGRK 761 Query: 638 RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPV 697 R + + + D+ + + + + T + Sbjct: 762 RDSLVEETRTTTTTTTTRQGRKPSDTNGSPSIKDRLRSSPRKQKTSPQQTRTPTPAQTRN 821 Query: 698 STPEMESSNSSSDPIVKKTRWWKRR 722 +++ +SS D + +RR Sbjct: 822 PEDDVDGDSSSPDASPTRVGNERRR 846 >gi|311114163|ref|YP_003985384.1| cna protein B-type domain-containing protein [Gardnerella vaginalis ATCC 14019] gi|310945657|gb|ADP38361.1| cna protein B-type domain protein [Gardnerella vaginalis ATCC 14019] Length = 984 Score = 38.0 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 30/152 (19%), Gaps = 6/152 (3%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + + Q D + K +S + + E+ Sbjct: 676 FKKDEPKDPKPNTEPKNPQPKHEDPKDPKQNPNPKDPKKDKPKSKDPKPKDPNPEKDKPK 735 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLEN 681 + ++ TD D V + + D + Sbjct: 736 DPDNKPKQNPEPKKTDPKDYNPVKPDTPKSPDPKKDDPKPKDKPNNPNYQDRDVPDTKPE 795 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 TP+ S DP Sbjct: 796 DPKKPDNPTKPKDDKSDTPKEPESKEPKDPKP 827 >gi|154736702|gb|ABS84878.1| immunoglobulin G binding protein A [Staphylococcus aureus] Length = 439 Score = 38.0 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 42/149 (28%), Gaps = 6/149 (4%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ ++ E + + L + D+ P + N + +D Sbjct: 210 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKED-G 263 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P + +D + G + ++ + + + N Sbjct: 264 NKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDNKKPG 323 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYD 691 D + N E+G E+ + Sbjct: 324 KEDGNKPGKEDGNKPGKEDGNKPGKEDGN 352 >gi|302417142|ref|XP_003006402.1| calpain-1 catalytic subunit [Verticillium albo-atrum VaMs.102] gi|261354004|gb|EEY16432.1| calpain-1 catalytic subunit [Verticillium albo-atrum VaMs.102] Length = 898 Score = 38.0 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 35/296 (11%), Positives = 74/296 (25%), Gaps = 32/296 (10%) Query: 439 VEKKLKESLKKDRAR----VQVGAISN-FGLLEMSRQRIRSSVLESTTKVCTYCKGAGYI 493 E L + DR R + G+ + + TK + Sbjct: 432 YEDFLNKFQHFDRTRLFNDPKWRCCQRWIGVDVPWKPQYNEKFQVKLTKDSP------MV 485 Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVV 553 S S + + + + + Y++ R+ +R VSI + Sbjct: 486 ISLSQLDNRYFKGLHGQYRFELHFRVHEQGRPNAEDYIV---RSHGNYLMSR-SVSIEI- 540 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA---PSYDKNIECVWQDEALLPIPKSE 610 ++ + I + + S + + V L + Sbjct: 541 --PDMPAGDYSIFISVKAERYTQLDSVEDVVKRECKHRSGNAKLAQVGYAYDLAHSKAAA 598 Query: 611 SLEDIQDNIVSEESTG----VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 LE++ +E +RR++ RRR + ++ + + + Sbjct: 599 HLEEVSRLRKEKEQKKASALRKEERRKQWERRRLTRQVNKQQKAKNLEKKERKATKAKEE 658 Query: 667 YMEPSDITNHNLLENGAHGFTENYDVSI-------PPVSTPEMESSNSSSDPIVKK 715 E D + + D P + S KK Sbjct: 659 AEEGDDEGGDDQADEATQQDQNAKDAPKVMTQERLPAEDEKATTPPPAPSKKAAKK 714 >gi|115751599|ref|XP_781622.2| PREDICTED: similar to kinesin-related protein [Strongylocentrotus purpuratus] Length = 2537 Score = 38.0 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 69/641 (10%), Positives = 186/641 (29%), Gaps = 40/641 (6%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 + +AL +E N+ + + +T + S E E++ Sbjct: 1608 VQELEALKEEKNLKDEEISDLEARLTSESQEKSAEEDKVVELESDLASVVQELEALKEEK 1667 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 N + D++ D +K + + E+ + +L ++ + K V +L + Sbjct: 1668 NLKDEQISDLEARLNSDSQEKSAEEEKVVELESHLTGVLQELEALKEE-KNQKVGKFLEM 1726 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 N ++ E + + + E+ + I R + + ++ Sbjct: 1727 QSHL-----NDARQELEFLNEDKNLREEQMAELKSRFANVSQEQDIFREEKVAEAESKLA 1781 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 + + L + + + + + +R+ ++ + Sbjct: 1782 NVLQEIEALKEGKNLREQHMAELEAMLAHVSQEQDTVREEKVLELESRLSC--VLQEMDT 1839 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 ++ + + + ++ +L + + L + Y I++Q + Sbjct: 1840 LKVEETLKEAKATELETRHSEVLNDMERLQDELTRIKDEKARLEAANYEIMSQMQK---- 1895 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 DV + + E + + +L AA E R ++ + + + R E + Sbjct: 1896 DVVTMETQTEEDVAEVEQSHDLHAAIEKLR--KVLTSKDQEICEVKAQSSHEMGRLEELQ 1953 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 + ++ A LE + R+ ++++++ ++ ++ + + S Sbjct: 1954 QCLEEESREREERITA--ELRNLEAEKTRLEAALVKAELELGDSISETCLLKEEMEMMES 2011 Query: 503 ILRSVEEYLLQYTAHNIIV-HTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 L E L + D LL+QK I + + + Sbjct: 2012 RLAEGRESALGQQQQEMEELMVELDSARNLLSQKEDEIEKLQEFMKL------------- 2058 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 + + S + ++ + + L+ + E + Sbjct: 2059 ----------ENEEAIKQEAQSRHETKRLHNLLQQLEGESKLVKEQIRQECETSWQVVCE 2108 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 E T + R ++R + + V S S + ++ + Sbjct: 2109 ELRTAMQESEREKQRLEAALWNAEEKQVQSHQFSEHRLQGVCEELRTAMEESEREKERLE 2168 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 A E S+ + K + W+ R Sbjct: 2169 VALRKAEEKQESLEKEVKKRKDEVKRVRIESFKNVQDWEER 2209 >gi|328944973|gb|EGG39130.1| translation initiation factor IF2 [Streptococcus sanguinis SK1087] Length = 930 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 6/121 (4%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630 + V + E A P K+E++ ++ + Sbjct: 61 EKPVAAQPSPKKTPAKEAAPVKAEQTEAKAAAQPEAKAETVAPVKRPQSRNFKAEREARA 120 Query: 631 -----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 RR+++ R+P D + + D P+D ++ + +G Sbjct: 121 KEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRNG 180 Query: 686 F 686 Sbjct: 181 Q 181 >gi|326919998|ref|XP_003206263.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Meleagris gallopavo] Length = 1167 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 9/146 (6%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K SD + K I + SEE + Sbjct: 1024 DKLKIADDGHARNSNSDSDDGEQQHSKRIVSDSDSDNRNKSGSEAGSPRRSSVHPSEEDS 1083 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R R+RRR +D+ S+Q+ S E + + + Sbjct: 1084 DSDRSARKRRRSDSEQSDN---------ESVQSGRSRSGGSDNESRPASRSADSDRDSER 1134 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDP 711 ++N + E E SN+ Sbjct: 1135 GSDNEGSGRGSGNESEPEGSNNEGSE 1160 >gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus DSM 20712] gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus DSM 20712] Length = 758 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 39 KGNIYLAKVTRVEP-SLQAAFVDYGGNRHGFLPFLEIHPDYYQI 81 G +Y V + P AF++ + G L EI DY +I Sbjct: 626 VGEVYDGIVKSIMPFG---AFIEILPGKDGLLHVSEI--DYKRI 664 >gi|322782508|gb|EFZ10457.1| hypothetical protein SINV_11681 [Solenopsis invicta] Length = 873 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 4/158 (2%) Query: 561 KLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 F + N K + K + + LL + D Sbjct: 600 NDFENIAERIKRRKENAEKKTSEQGIESNASKRNRTATKKKTLLERIDEDPTVDQAALST 659 Query: 621 SEESTGVIRK--RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 S+EST + RR +RR+ +T D + + S S + N + Sbjct: 660 SQESTEIDGSSMRRAKRRKTSKSTQKEDMEKNESSTDAASSPRKSARNLTRVSSMANES- 718 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + + ++ PP S E+E ++ V K Sbjct: 719 -DGVRNKTNSKFNYDSPPESCDEIEECTPENERTVGKV 755 >gi|299754470|ref|XP_001840052.2| hypothetical protein CC1G_13110 [Coprinopsis cinerea okayama7#130] gi|298410771|gb|EAU81759.2| hypothetical protein CC1G_13110 [Coprinopsis cinerea okayama7#130] Length = 902 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 37/137 (27%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + +++ S + + + K+ S D +E+ + Sbjct: 731 ESEDHAANDPLERKTRSRSRELHSSSNREGSTGAQKRKTRSRSRQPDPASDDEAPSSFKG 790 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 R RR+RR + + + S S QN + E + A Sbjct: 791 IRTRRQRREGSVPKSISQIRSTTSKSQNPASQAVKRKAEGLAMERTPKRRASAQLQERRT 850 Query: 691 DVSIPPVSTPEMESSNS 707 S +E + Sbjct: 851 SPRKAARSAARLEPATP 867 >gi|15705403|gb|AAL05625.1|AF352051_1 proliferation potential-related protein [Homo sapiens] Length = 1616 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 826 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 882 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 883 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 942 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 943 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 974 >gi|19115532|ref|NP_594620.1| RNA polymerase II associated Paf1 complex subunit Tpr1 [Schizosaccharomyces pombe 972h-] gi|26400735|sp|O42668|TPR1_SCHPO RecName: Full=Tetratricopeptide repeat protein 1 gi|2664248|emb|CAA15833.1| RNA polymerase II associated Paf1 complex subunit Tpr1 [Schizosaccharomyces pombe] Length = 1039 Score = 38.0 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 3/221 (1%) Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIE 557 + A+ L + E + + ++ + + K T + E I + Sbjct: 809 NFAMQQLDASIETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSVA 868 Query: 558 LADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLP---IPKSESLED 614 + I++ + + + Q E E +L + S +D Sbjct: 869 AKLEDARIQREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDD 928 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + + E+ +G +K+ R++R+ + + D+GV D + + + Sbjct: 929 MSLSDDEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTKKRRVNRRVI 988 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + N + + + ++ + + K+ Sbjct: 989 SEEYTFDQDSDAEGNQEEEVSRTIEEKQDNDITDNQDDNKE 1029 >gi|62202882|gb|AAH93405.1| PHF20 protein [Homo sapiens] Length = 550 Score = 38.0 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|29387348|gb|AAH48210.1| PHF20 protein [Homo sapiens] gi|123232482|emb|CAI43146.2| PHD finger protein 20 [Homo sapiens] gi|123233700|emb|CAM27594.1| PHD finger protein 20 [Homo sapiens] Length = 549 Score = 38.0 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|327462405|gb|EGF08730.1| translation initiation factor IF2 [Streptococcus sanguinis SK1057] Length = 930 Score = 38.0 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 6/121 (4%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK- 630 + V + E A P K+E++ ++ + Sbjct: 61 EKPVAAQPSPKKTPAKEAAPVKAEQTEAKAAAQPEAKAETVAPVKRPQSRNFKAEREARA 120 Query: 631 -----RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 RR+++ R+P D + + D P+D ++ + +G Sbjct: 121 KEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRNG 180 Query: 686 F 686 Sbjct: 181 Q 181 >gi|302844544|ref|XP_002953812.1| hypothetical protein VOLCADRAFT_94528 [Volvox carteri f. nagariensis] gi|300260920|gb|EFJ45136.1| hypothetical protein VOLCADRAFT_94528 [Volvox carteri f. nagariensis] Length = 579 Score = 38.0 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 38/148 (25%), Gaps = 12/148 (8%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + G S +P D P+ +++D Sbjct: 146 AAETHARLPAGPGRRSTSPDASPPRRRQRHDSPDASPPRRGTIQDASPPRRGTIQDASPP 205 Query: 630 KRRRRRR-------RRRPATDHHDA-----GVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 +RR+R+ RRR D DA G V D S + + Sbjct: 206 RRRQRQDSPDASPPRRRQRHDSPDASPPRRGTVQDASPPRRRQRRDSPDASPLRRGAVQD 265 Query: 678 LLENGAHGFTENYDVSIPPVSTPEMESS 705 ++ D S P T + S Sbjct: 266 ASPPRRRQRHDSLDASPPRRGTVQDASP 293 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 31/149 (20%), Gaps = 4/149 (2%) Query: 564 YIEKGSPVQ----ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 IEK A + + + P IQD Sbjct: 133 QIEKVKTGSGWVSAAETHARLPAGPGRRSTSPDASPPRRRQRHDSPDASPPRRGTIQDAS 192 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 T RRR+R+ S + P Sbjct: 193 PPRRGTIQDASPPRRRQRQDSPDASPPRRRQRHDSPDASPPRRGTVQDASPPRRRQRRDS 252 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + + + PP +S ++S Sbjct: 253 PDASPLRRGAVQDASPPRRRQRHDSLDAS 281 Score = 37.3 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 29/129 (22%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + + P + + + + + RRR+R Sbjct: 190 DASPPRRGTIQDASPPRRRQRQDSPDASPPRRRQRHDSPDASPPRRGTVQDASPPRRRQR 249 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R P G V D S + P T + ++ D S Sbjct: 250 RDSPDASPLRRGAVQDASPPRRRQRHDSLDASPPRRGTVQDASPPRRRQRHDSPDASPLR 309 Query: 697 VSTPEMESS 705 + S Sbjct: 310 RGAVQDASP 318 >gi|292627503|ref|XP_695429.4| PREDICTED: rab effector MyRIP [Danio rerio] Length = 1194 Score = 38.0 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 8/192 (4%) Query: 532 LNQKRAT-IVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTG---HKVGSDSQA 587 KR + + E E + ++ A + IE+ + + Sbjct: 717 RESKRESKLREMEKQSERQTVKLMDTSDAVRQINIERQMKKERERQRDIERQVERERERQ 776 Query: 588 PSYDKNIECVWQDEALLP---IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 +K IE + + K E ++++ + E+ +R ++R+ + Sbjct: 777 RELEKQIEKDRERRREIEMQVEKKQERQKEMEKQLKQEQERQSEIERDLEKKRKSIRMEK 836 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 V Q ++ ++ + N +L E E + S E + Sbjct: 837 EKLVSVKSREREQELVRETGEASGRALK-RNKSLEEYKYETEKEKVNKISAQRSKSETSA 895 Query: 705 SNSSSDPIVKKT 716 D ++ Sbjct: 896 ERKKLDIKTARS 907 >gi|161086926|ref|NP_067375.3| proteoglycan 4 isoform 1 [Mus musculus] Length = 1221 Score = 38.0 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 9/112 (8%), Positives = 24/112 (21%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K P + + E + + +E Sbjct: 715 KPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPKEPEPTTPKEPEP 774 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 K+ T + V++ I + + S+ ++ + Sbjct: 775 TTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASEDSDDSK 826 >gi|268560560|ref|XP_002638092.1| Hypothetical protein CBG04933 [Caenorhabditis briggsae] gi|187035670|emb|CAP25551.1| hypothetical protein CBG_04933 [Caenorhabditis briggsae AF16] Length = 662 Score = 38.0 bits (86), Expect = 6.4, Method: Composition-based stats. Identities = 26/251 (10%), Positives = 59/251 (23%), Gaps = 21/251 (8%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 + + + + + C Y G I+ + + R + ++ Sbjct: 61 QSKPTNILADMNNCKYQDGFCEIKKNEIITWDVNRDQK-----------CQFISIGILDG 109 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQ----ALVNTGHKVGSDSQ 586 + N K I + + I+ + +N Q Sbjct: 110 MYNNK------LWVNNKNQIALNFETQKIVNDCNIDLMISDEGFAVRKINRAPSQYPPKQ 163 Query: 587 APSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHD 646 P + Q + + E + QD I E + ++ + RRR Sbjct: 164 IPISIEQEVQRQQQHDMRKREQEELRKREQDEIKRREQEDIRKRDQEDARRRDQERQKQY 223 Query: 647 AGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSN 706 + D + + + E E + + Sbjct: 224 EADLKDFEKKKQEKLKKEEELEKKKQEKTKKAQEEAERKEIEALRKQRKDEDWTVHDEKS 283 Query: 707 SSSDPIVKKTR 717 D +T+ Sbjct: 284 KGVDKKSNRTK 294 >gi|303322128|ref|XP_003071057.1| hypothetical protein CPC735_036180 [Coccidioides posadasii C735 delta SOWgp] gi|240110756|gb|EER28912.1| hypothetical protein CPC735_036180 [Coccidioides posadasii C735 delta SOWgp] Length = 646 Score = 38.0 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 4/149 (2%) Query: 576 NTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRR 635 + Q I + +E +P+ E+ + +R Sbjct: 378 AEAEAELAQRQKRRISGRIPEAFGEEKPGQLPEQFRGEERPGAVPGTREPAREAERTEES 437 Query: 636 RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 +R R +AG+V+ V D ++ + T +E + + Sbjct: 438 KRFREG--DKEAGLVAGVGQPPRKESDREEIPEQFRAETPGQPVEERPQAPVQERVAGMA 495 Query: 696 P--VSTPEMESSNSSSDPIVKKTRWWKRR 722 P E + K++RW +RR Sbjct: 496 PGAEEPVEAVPPPHEGEEAHKQSRWARRR 524 >gi|242279645|ref|YP_002991774.1| PSP1 domain protein [Desulfovibrio salexigens DSM 2638] gi|242122539|gb|ACS80235.1| PSP1 domain protein [Desulfovibrio salexigens DSM 2638] Length = 433 Score = 38.0 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 29/145 (20%), Gaps = 5/145 (3%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + + + S DE + D + + R Sbjct: 253 DEIEIPLDDWPDMIKPSGSDRGGESDFRSDEPRRGRSEGRGDRDGNSSRPQRSRSDRSRP 312 Query: 631 RRRR--RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 R R R G V+ + S D + + + Sbjct: 313 DRSRSDRSNSDRPRPERKPGRVNPEREKTDQPKVSVDKPEVKEERRKDDSQQQDRRKRPV 372 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIV 713 D P PE + P Sbjct: 373 RKDR---PQQKPEQQKPEQDKQPAT 394 >gi|196968475|gb|ACG80811.1| hypothetical protein [Chlamydophila pecorum] Length = 276 Score = 38.0 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 11/148 (7%), Positives = 32/148 (21%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 ++ + S +P E ++ + E Sbjct: 92 KKPSPKESSAKEPSSKESSPKELSPKESSPKELSPKESSPKELSPKESSPKKPSPKEPSP 151 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ + + ++ + S + S + + + E + Sbjct: 152 KELSPKEPSPKESSAKEPSSKESSPKELSPKKPSSKEPSSKELSPKESSPKELSPKESSP 211 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKT 716 P S P K++ Sbjct: 212 KELSPKKPSPKESSPKELSPKKPSPKES 239 >gi|156102018|ref|XP_001616702.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148805576|gb|EDL46975.1| hypothetical protein, conserved [Plasmodium vivax] Length = 1960 Score = 38.0 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 11/106 (10%), Positives = 24/106 (22%) Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + E + E RK + ++ + + A + + + + Sbjct: 118 KPQEKKPEEKKPAEKKPAERKPQEKKPEEKKPAEKKSAEKKLVETKPEEKKVEGKKPEEK 177 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + E P E P KK Sbjct: 178 KVEEKKPAEKKPAERKPQEKKPEEKKPAEKKSAEKKLVEKKPQEKK 223 >gi|148685336|gb|EDL17283.1| retinoblastoma binding protein 6, isoform CRA_b [Mus musculus] Length = 1790 Score = 37.6 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I D LF + + + S + DK+ + + K +S Sbjct: 967 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 1026 Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R + P ++ + + I +V S E Sbjct: 1027 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1086 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715 T A E V +++S S D KK Sbjct: 1087 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1133 >gi|118091214|ref|XP_420968.2| PREDICTED: similar to KIAA0155 [Gallus gallus] Length = 1265 Score = 37.6 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 29/129 (22%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 +K SD + K I + SEE + Sbjct: 1122 DKLKIADDGHARNSNSDSDDGEQQHSKRIVSDSDSDNRNKSGSEAGSPRRSSVHPSEEDS 1181 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R R+RRR +D+ S + + + G+ Sbjct: 1182 DSDRSARKRRRSDSEQSDNESVQSGRSHSGGSDNESRPASRSADSDRDSERGSDNEGSGR 1241 Query: 686 FTENYDVSI 694 + N Sbjct: 1242 GSGNESEPE 1250 >gi|72391136|ref|XP_845862.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62175489|gb|AAX69629.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70802398|gb|AAZ12303.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 951 Score = 37.6 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 9/138 (6%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD------KNIECVWQDEALLPI 606 V K IEK + G K A + + + ++ P+ Sbjct: 536 VGNSRRQPKAMEIEKLEGAELAERGGSKSNVMRSAADDEIKNAGNLDSQHRHGTDSDRPL 595 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRR---RPATDHHDAGVVSDVSSIQNVIDDS 663 P+ + + D E + ++R RRR+ TD A +V S ++ Sbjct: 596 PEGQGTREQGDEETQHEGSEKTEPKKRGRRRKTLHSSETDDRTAETSGEVRSSTVATKET 655 Query: 664 FDMYMEPSDITNHNLLEN 681 + + + Sbjct: 656 KKVGTTEGEEKGEATKKR 673 >gi|322710169|gb|EFZ01744.1| Mis12-Mtw1 family protein [Metarhizium anisopliae ARSEF 23] Length = 471 Score = 37.6 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 36/166 (21%), Gaps = 12/166 (7%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + S + ES I S Sbjct: 32 ADFERDDDFQFVRKSKRSKTEESSGSKTTGGGRITAEQVVKESTSTANKAIAPSTSATPG 91 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R RRR+ A+ + + + + I + Sbjct: 92 TRRSSRRRQADDASHQDEPQTDRRPTRRSIRVATAGADDSAEGSILRGTSKATSPNREKA 151 Query: 689 NYDVSIPPVSTPEMESSN------------SSSDPIVKKTRWWKRR 722 + P TP + + + + + KK RR Sbjct: 152 SKPRRWEPSPTPRRPTESKIALPMSDTPIINRNKEMRKKGGKGNRR 197 >gi|331238707|ref|XP_003332008.1| pol II transcription elongation factor [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310998|gb|EFP87589.1| pol II transcription elongation factor [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1107 Score = 37.6 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 45/186 (24%), Gaps = 9/186 (4%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + S+LR E A+ + +R + E E I Sbjct: 915 QRKRYGESLLRRTSELSESQEAYESSEIAKIERARQERENERQRLAEAERLRLEEIAAK- 973 Query: 555 GIELADKLFYIE--------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 EL K ++ K + G K N E + Sbjct: 974 NEELTRKRQEMQESVATWYIKQANSDNESEDGTKKKRKGGGGKRKNNKETGITIVPDDEV 1033 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + E+ + + ++ + R R + D SD + N Sbjct: 1034 DEGSEQEEKKRKRKRTKKQSNQKEDQANNRANRAISTGEDENYDSDDAKPVNRSSKKKSG 1093 Query: 667 YMEPSD 672 + S Sbjct: 1094 KIYKSA 1099 >gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18] gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18] Length = 553 Score = 37.6 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 14/167 (8%), Positives = 45/167 (26%), Gaps = 8/167 (4%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 ++G+ Q + +++ + ++ + P + ++ + Sbjct: 388 HQSHKDKKQGNNKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQKQQDNNPAATEG 447 Query: 619 IVSEESTGVIRKRRR----RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 + K ++ + D A + + N + + + + Sbjct: 448 KPVNKKNNRQNKGKQQECQPKVDNEKRNDRKPANNKGNAENTTNQQNKKPNNKRKKRNNR 507 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + T+ P ++ S ++KK W R Sbjct: 508 QRTPEDKSVRRSTKYDIREELPS----TSNNESGLKALIKKPLKWLR 550 >gi|195155519|ref|XP_002018651.1| GL25911 [Drosophila persimilis] gi|194114804|gb|EDW36847.1| GL25911 [Drosophila persimilis] Length = 5525 Score = 37.6 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 11/156 (7%), Positives = 26/156 (16%), Gaps = 3/156 (1%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL---PIPKSESLEDIQDNIVSE 622 E+ Q + + + E E + + Sbjct: 2119 ERSEKEQRQEREKAHQKERHEREKRKQQEREEKEKERKAHHHQPEDKEKEKAHPERKTQT 2178 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 K R+ + + + + + E + Sbjct: 2179 HHQEEKEKERKSHQEEKEKERKAQQQEEKEREERKAKEEKERKAQEEREQKERDEKEQQR 2238 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 E E + D K+ Sbjct: 2239 VQEQREQEKREREQREKEHREKEHRERDHREKEKEQ 2274 >gi|330797953|ref|XP_003287021.1| hypothetical protein DICPUDRAFT_151081 [Dictyostelium purpureum] gi|325082984|gb|EGC36449.1| hypothetical protein DICPUDRAFT_151081 [Dictyostelium purpureum] Length = 605 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 21/203 (10%), Positives = 57/203 (28%), Gaps = 13/203 (6%) Query: 499 VALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGI-- 556 A + + + +++I + + V + +V+ E ++G + Sbjct: 373 QAEKFFDELSKVGMSEDDYSVIGFLNQEKVNPEGQELYKKMVKIEKKYG----IDPDDKE 428 Query: 557 -----ELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 L +++ + + + Q + L I K S Sbjct: 429 GEDIYNLDRAFYWLNRIKECVSTTEEKEILLGLYQIEVLRNPETITNEKNLELSIGKEAS 488 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV--IDDSFDMYME 669 + +N+ SE+ + + + T + S+++ D S + +E Sbjct: 489 PDGEPNNLNSEDERKNKKNLPKEKTTTTTTTTSKNKSENKKRSTVEKAALSDLSDEPDLE 548 Query: 670 PSDITNHNLLENGAHGFTENYDV 692 + + N Sbjct: 549 ELQKRQKSTKNSTKKVSKINKKT 571 >gi|313231901|emb|CBY09013.1| unnamed protein product [Oikopleura dioica] Length = 713 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 48/239 (20%), Gaps = 34/239 (14%) Query: 512 LQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK-LFYIE---- 566 + T V + + I E ++G + F ++ Sbjct: 282 MHTTEDPYTRPGCPKVKYGFDRELKQYIANLERKYGKLKRFAPKTPFDPEKHFDVKNLFD 341 Query: 567 --------------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE-- 610 K + T K S P +K + Sbjct: 342 AVPGNVLAKIPPLRKEPRATDKIKTLIKGVSTIINPKPEKLKSEKLDSDDSTNGAFDFHS 401 Query: 611 ------------SLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH-HDAGVVSDVSSIQ 657 S E ++++ + + +R R PA + + S + Sbjct: 402 DDDSDDGNKLIISDESSKEDLKKRKPKSEPARAPKRLRSDSPAENALQQKSKLRIESPVS 461 Query: 658 NVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + A +E N+ + K Sbjct: 462 EKSAPPPPPPEGKNAYQRQEKERKEAIKRGRERPPPRATPEPKVLEPPNTPKNGKEKNK 520 >gi|254579771|ref|XP_002495871.1| ZYRO0C04906p [Zygosaccharomyces rouxii] gi|238938762|emb|CAR26938.1| ZYRO0C04906p [Zygosaccharomyces rouxii] Length = 608 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 7/156 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K A + S+ + + + + S + E + +S+ Sbjct: 241 KTQAELAQKSNSMSSIPQSKDKQNNSSSNNSVEPKKNTSPKSSTNKESNKTGATKNDSSA 300 Query: 627 VIRKRRRRRRRRRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +K ++ + D D +S S ++ E S + E + Sbjct: 301 STKKESSAGVKKDGTNGNVKKDNSSSKDNNSTAKKDTHSGNVKKENSALNTSKSNEKKDN 360 Query: 685 GFTENYDVSIPPV-----STPEMESSNSSSDPIVKK 715 T V +T + ++ P VKK Sbjct: 361 KPTSKTSVKKENSVSSGTNTTNKKPIDTKKKPPVKK 396 >gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] Length = 533 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 24/92 (26%) Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVI 660 +A K +D +E++ + +R R R R+ D D + Sbjct: 385 DAPAETTKEADAPKAEDAPKAEDAPKTEKPKRSRTRSRKKDDAPKDETPKVDAVEPEAKA 444 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 + + D ++ Sbjct: 445 ETPQAKAAQQPDAKPAAEEPKAPEAKAQDDQP 476 >gi|114589671|ref|XP_516796.2| PREDICTED: u2 snRNP-associated SURP motif-containing protein [Pan troglodytes] Length = 1029 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 13/218 (5%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 +S E +L + + + +KRA + E E + Sbjct: 810 KSEEHHLYSNPIKEEMTESKFSKYSEMSEEKRAKLREIELKVMKF------------QDE 857 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +E G + + + + + E + E E LE + ++ Sbjct: 858 LESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSKDKKEKDE 917 Query: 625 TGVIRKRRRRR-RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + RK R+RR + V S + S + E S + + Sbjct: 918 STPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRD 977 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 S S + S KK+R R Sbjct: 978 VSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSR 1015 >gi|74420524|gb|ABA04723.1| methionyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] Length = 692 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 1/82 (1%) Query: 642 TDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPE 701 T + Q + + + + A T Sbjct: 79 TKRTVRKAARKPAKKQPATRTPKKVASKKTASKKVAPKKPTAKKVTPRKTAPRKAAPEKA 138 Query: 702 MESSNSSSDPIVKKTRWWKRRK 723 + ++ P+ KKT+ RK Sbjct: 139 ARKRSVTTPPV-KKTKPRAPRK 159 >gi|325697663|gb|EGD39548.1| translation initiation factor IF2 [Streptococcus sanguinis SK160] gi|327490542|gb|EGF22323.1| translation initiation factor IF2 [Streptococcus sanguinis SK1058] Length = 930 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 6/124 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + V + E P K E+ ++ Sbjct: 58 ATAEKPVAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKVETAAPVKRPQSRNFKAERE 117 Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + RR+++ R+P D + + D P+D ++ + Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177 Query: 683 AHGF 686 +G Sbjct: 178 RNGQ 181 >gi|114581997|ref|XP_001157704.1| PREDICTED: similar to KIAA1604 protein isoform 3 [Pan troglodytes] Length = 909 Score = 37.6 bits (85), Expect = 6.8, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + + E + + Sbjct: 719 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 764 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D S D + + +++R Sbjct: 765 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 824 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ + S D S M ++ + +NGA E Sbjct: 825 GERRNSFSENERHTHRNKDSENFRRKDRSKSREMNRKHSGSRSDEDRYQNGAERRWEKSS 884 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 885 RYSEQSRESKKNQDRRREKSPAKQK 909 >gi|225456394|ref|XP_002280398.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1054 Score = 37.6 bits (85), Expect = 6.8, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 60/210 (28%), Gaps = 25/210 (11%) Query: 539 IVEYEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 + + E + + V + +EK + + + G K S+ D+ Sbjct: 264 LADKEQKGKIRKRKVTPSKSTSPGETSMEKPAKKRKQTSVGDKQRPSSEVEGEDEVEASA 323 Query: 598 WQDEALLPIPKSESLEDIQD---------------------NIVSEESTGVIRKRRRRRR 636 +D++ ++++ D + + R ++ Sbjct: 324 SRDDSDEVEDNDTAMKEQSDQEETKSEEEEEEKKEQKTTKKASSRKSVKEDSGAKHRGKK 383 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN-YDVSIP 695 + A + SS + D+ D + P + ++ D + Sbjct: 384 ASASRSVKSPAKLTKKSSSSTSKKADADDTSVAPKSKESSAKKRKAEKESQKDQSDPAKE 443 Query: 696 PVSTPEMESSNSSS--DPIVKKTRWWKRRK 723 ++ + S + + K + K+ K Sbjct: 444 KTASKKRSSRATEKVSSKDLGKGKTSKKAK 473 >gi|268592825|ref|ZP_06127046.1| translation initiation factor IF-2 [Providencia rettgeri DSM 1131] gi|291311610|gb|EFE52063.1| translation initiation factor IF-2 [Providencia rettgeri DSM 1131] Length = 912 Score = 37.6 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 34/156 (21%), Gaps = 8/156 (5%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 + + G +I + + K + + E + A Sbjct: 178 QQKPGKAIESNADKQRREAEAAELKRKAEEETQRKVEAEARRVAEEARKMAEENGEKWTA 237 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + K RR R R A + N + + Sbjct: 238 ETKTEEDSDYHTTTSTHARAAEDESDEKEEGRRSRNRTAK--------APRQKKGNKLSE 289 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVS 698 D E + + G + + P V+ Sbjct: 290 KADREEERAAGRSGRSKGKQRKGSSLQQSFTKPAVA 325 >gi|163937858|ref|NP_035377.2| E3 ubiquitin-protein ligase RBBP6 isoform 1 [Mus musculus] gi|97180308|sp|P97868|RBBP6_MOUSE RecName: Full=E3 ubiquitin-protein ligase RBBP6; AltName: Full=Proliferation potential-related protein; AltName: Full=Protein P2P-R; AltName: Full=Retinoblastoma-binding protein 6; AltName: Full=p53-associated cellular protein of testis Length = 1790 Score = 37.6 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I D LF + + + S + DK+ + + K +S Sbjct: 967 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 1026 Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R + P ++ + + I +V S E Sbjct: 1027 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1086 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715 T A E V +++S S D KK Sbjct: 1087 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1133 >gi|83942388|ref|ZP_00954849.1| hypothetical protein EE36_15147 [Sulfitobacter sp. EE-36] gi|83846481|gb|EAP84357.1| hypothetical protein EE36_15147 [Sulfitobacter sp. EE-36] Length = 227 Score = 37.6 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 13/141 (9%), Positives = 36/141 (25%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ + + ++ Q+ A P ++++ + Sbjct: 87 QRRDQQERENRERQAERDRERVERQEREAAQAGQNTADQPAAEADTGDKSDAPQQDNAKG 146 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++RR R + D+ SD Q+ ++ P + Sbjct: 147 DAPKRRRSRSNNQNDNAPKSDSAPKSDGDDTQDGSAAEDNLVDTPENKPKPRRAPRRKPA 206 Query: 686 FTENYDVSIPPVSTPEMESSN 706 S + E++ Sbjct: 207 PKAEASEPAKDNSGDQPEAAE 227 >gi|325119321|emb|CBZ54875.1| hypothetical protein NCLIV_053000 [Neospora caninum Liverpool] Length = 1356 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 16/146 (10%), Positives = 36/146 (24%), Gaps = 3/146 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + G + + +DE E+ + E Sbjct: 509 ERVKKADERGRKEDERGKKEEERGRKEEERGRKEDERGKKEEDRGKQEEERVKKEDERGK 568 Query: 626 GVIRKRRRRRRRRR--PATDHHDAGVVSDVSSIQNVIDDS-FDMYMEPSDITNHNLLENG 682 G + ++ R R + D + DS + + N + E Sbjct: 569 GEDERGKKEEERGRLDRRSKEADEEEKRRRGEERAWRSDSTEERRRGDEEEKNADKREER 628 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSS 708 + P+ ++ S+ Sbjct: 629 RAEGKRDQAAYREREGAPQDAAAESN 654 >gi|296425724|ref|XP_002842389.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638655|emb|CAZ86580.1| unnamed protein product [Tuber melanosporum] Length = 1072 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 10/232 (4%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 +R + R++ + ++ D+ Y +KR T+ + + ++ Sbjct: 709 KLRITGKRIDHLERALRREEVNVLPKDLERQRAEDLAAY-EKKKRITLANSKRQHEEAVA 767 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 + + ++ + Q ++ + + + A + E+ Sbjct: 768 LKRRLSRLVPIYETFRNDIKQQRHQEFESRRKAAEKQLEVEMGKRRQEVRAAKERKRKEA 827 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 + + EE + R R+ A + + D Sbjct: 828 EAAERRRVEEEERARKEEEERVRKEAELRARMAEEKAKRDEERKR-------LDEIAAKQ 880 Query: 672 DITNHNLLENGAHGFTENYD--VSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + E A E + P TP +E+ S K + W R Sbjct: 881 RQREQEVEERKARERAERESLKRAAPVEETPAIEAPGSRRWAPPKASSWRDR 932 >gi|289719187|gb|ADD17182.1| SuAT1 [Theileria annulata] Length = 488 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 28/110 (25%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV+ + S + E ++ P Q E G + Sbjct: 352 PVEIGSDEEDHESEISDIELLFSSDEEHETEKIAKPKKPRIRRPRKQKPESETEKVGKPK 411 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++R R R+++P + + + + I Sbjct: 412 RKRGRPRKQKPELEEPKRKRGRPKKLKPDERETDHIEVHKQVRIDKRKSK 461 >gi|195117666|ref|XP_002003368.1| GI17878 [Drosophila mojavensis] gi|193913943|gb|EDW12810.1| GI17878 [Drosophila mojavensis] Length = 693 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 38/156 (24%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + S + + + + N + E+ +S+S D + E Sbjct: 341 RESKGRRERSADEQEKKGRRRGDSRSNEQTKSSRESRRRRDRSDSSADERSKKTKESKER 400 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R R R + + + S + DS + Sbjct: 401 RNRSNSRADERTGQQSRAAERSKKTKESKKRRSRSDSSAHERSEKAKESRARGTRSNSRE 460 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S ++K+T+ +RR Sbjct: 461 DGRVKSKEKKRRGERSSSRTDERIKLMKETKTMRRR 496 >gi|325688736|gb|EGD30745.1| translation initiation factor IF2 [Streptococcus sanguinis SK115] Length = 930 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 7/153 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + V + E P K E+ ++ Sbjct: 58 ATAEKPVAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKVETAAPVKRPQSRNFKAERE 117 Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + RR+++ R+P D + + D P+D N ++G Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPND-RRDNRGQDG 176 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + P+ + + K Sbjct: 177 RRNVQNHQGFNGQNRQQPQGPKIDFKARAAALK 209 >gi|294657626|ref|XP_459918.2| DEHA2E14080p [Debaryomyces hansenii CBS767] gi|199432831|emb|CAG88160.2| DEHA2E14080p [Debaryomyces hansenii] Length = 1314 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 19/226 (8%) Query: 492 YIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSIN 551 I + A R +E ++ A + ++ +KR +++ + +SI Sbjct: 617 LIDEEEKQAKEYERLMEIERKKHEAE---LRARKELAKQRKREKRKSLL---SSRKLSIL 670 Query: 552 VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSES 611 V +++ + + S + + K + + + Sbjct: 671 VKDDANNSEQDITVTDSDALSQPKRQSRNQAMRSISEGHGKESDDL-------------T 717 Query: 612 LEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 ED+++ + R+R+ RRP + + I+ D Y + Sbjct: 718 KEDLENLKRRSVTQPTPRRRKTPVLTRRPVSRLDPLWTAYENEEIERAQDALEAEYRDAD 777 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 T + ++ +V P + + + K+R Sbjct: 778 FKTKKKINRESMVSVMDDKEVDNEPHVDDDATDEVQDEEAVKAKSR 823 >gi|120864890|emb|CAL51160.1| immunoglobulin G binding protein A [Staphylococcus aureus] Length = 466 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 16/177 (9%), Positives = 41/177 (23%), Gaps = 2/177 (1%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ + K E A + + E + Sbjct: 267 EQRNGFIQSLKDDPSV-SKEILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGK 325 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + + ++P + + D + Sbjct: 326 EDNNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGN 385 Query: 663 SFDMYMEPSD-ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + N + G T N + ++ + N +D + K Sbjct: 386 KPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 442 >gi|32492948|gb|AAN08621.1| medulloblastoma antigen MU-MB-50.72 [Homo sapiens] Length = 550 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLEPRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|301611581|ref|XP_002935318.1| PREDICTED: hypothetical protein LOC100485530 [Xenopus (Silurana) tropicalis] Length = 555 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 2/157 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K A + V + V +E + + NI+ ++ Sbjct: 144 KDDLEAAEDSKDIAVNGAQTEGNKIPVTTEVKFEEESAKKVPERKEDKNESNILEAIASD 203 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 R++++ + ++G ++++++ NV + + + +E N E Sbjct: 204 EKREKKKAEHSEIKPSGKEESGKEAEITTLTNVKEKNMEEKIETVIEIEPNSKEENVEKD 263 Query: 687 TENYDVSIPPVSTPEMESSNSSSDP--IVKKTRWWKR 721 E SI S+ + + + + KK +W + Sbjct: 264 QEIKAESIKETSSDDKKETGEEKTAMNLAKKKKWKRP 300 >gi|148685341|gb|EDL17288.1| retinoblastoma binding protein 6, isoform CRA_f [Mus musculus] Length = 1741 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I D LF + + + S + DK+ + + K +S Sbjct: 918 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 977 Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R + P ++ + + I +V S E Sbjct: 978 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1037 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715 T A E V +++S S D KK Sbjct: 1038 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1084 >gi|148685335|gb|EDL17282.1| retinoblastoma binding protein 6, isoform CRA_a [Mus musculus] Length = 1775 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I D LF + + + S + DK+ + + K +S Sbjct: 952 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 1011 Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R + P ++ + + I +V S E Sbjct: 1012 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 1071 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715 T A E V +++S S D KK Sbjct: 1072 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1118 >gi|56204065|emb|CAI19246.1| PHD finger protein 20 [Homo sapiens] gi|57284132|emb|CAI43144.1| PHD finger protein 20 [Homo sapiens] Length = 543 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 19/212 (8%), Positives = 59/212 (27%), Gaps = 8/212 (3%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFG 547 G ++ V ++ + + + + + L+ +++ + Sbjct: 113 DGTYTVKFYDGVVQTV-KHIHVKAFSKDQNIVGNARPKETDHKSLSSSPDKREKFKEQRK 171 Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++NV E L ++ S KN + ++ + Sbjct: 172 ATVNVKKDKE-DKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDRE 230 Query: 608 -----KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + +E+ +++R R P ++ + ++ Sbjct: 231 YSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRKI 290 Query: 663 SFD-MYMEPSDITNHNLLENGAHGFTENYDVS 693 S + N + + ++EN D Sbjct: 291 SKGCEVPLKRPRLDKNSSQEKSKNYSENTDKD 322 >gi|327279384|ref|XP_003224436.1| PREDICTED: microtubule-associated protein futsch-like [Anolis carolinensis] Length = 1396 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 34/170 (20%), Gaps = 2/170 (1%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + E+G P + + S + + E Sbjct: 823 RPDEAHPRPRTHAERGRPE-KEDSKREAHPEQEHSESRSRPGAERSRPRPQAEPDHREKE 881 Query: 613 EDIQDNIVSEESTGVI-RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS 671 E + E + R + + H S+ S EP Sbjct: 882 ESAPECRPDEAHPRPRTHAEQGRPEKEDSKREAHPEQEHSEPRSHPGAERSRPRPQAEPD 941 Query: 672 DITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 G + PE E S + P + R Sbjct: 942 HHEKEESAPECRPGEAHPRPRTHAERGRPEKEDSKREAHPEQGHSEQRSR 991 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 38/164 (23%), Gaps = 4/164 (2%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + + + P + KSE+ + Sbjct: 384 RPEERHSRARTHAGSEQPESEESAPRTRPDAARPRPRSESSRPEHEDSKSETHRESTCPE 443 Query: 620 VSEESTGVIRK-RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 + + + R R RR + + DS + + Sbjct: 444 AEDSKSRSRPEAERSRPRRHPERDNPEKEDTKGEAHRESE---DSEPRSHPEAARSRSRP 500 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E H E+ P T +++ D VK+ RR Sbjct: 501 QEERDHHDKEDSVPECRPDGTHPRPRAHAEGDRPVKEDSTTGRR 544 Score = 37.6 bits (85), Expect = 8.4, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 29/161 (18%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 + E+G P + + P E P + Sbjct: 758 RPDEAHPRPRTHAERGRPEKEDSKREAHREQEHSEPRSHPEAERSRPRTQAEPDHHEKED 817 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + R R + + H S+ S EP Sbjct: 818 SACECRPDEAHPRPRTHAERGRPEKEDSKREAHPEQEHSESRSRPGAERSRPRPQAEPDH 877 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + PE E S + P Sbjct: 878 REKEESAPECRPDEAHPRPRTHAEQGRPEKEDSKREAHPEQ 918 >gi|326924573|ref|XP_003208500.1| PREDICTED: THO complex subunit 2-like [Meleagris gallopavo] Length = 1604 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 55/204 (26%), Gaps = 28/204 (13%) Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 I+ ++E + DV + +++ + G I V L Sbjct: 1357 IVTTIESKSVAEKEREKEPSREKDVAKDMKSKEN-------TKGGEKIPVAG--SLKSP- 1406 Query: 563 FYIEKGSPVQ----ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + + S S + + N+ + I + Sbjct: 1407 --VPRSETSECEREQKRRKVDIHSSPSHSSTVKDNLNELKDSSTKHYINHTTPTLSKSKE 1464 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 ++ + R R R ++ D D D S P D T Sbjct: 1465 REVDKKDLDKSRERSREREKKEEKDRKD-----------RKRDHSNSDREVPQDSTKRRK 1513 Query: 679 LENGAHGFTENYDVSIPPVSTPEM 702 ENG G +++ S P +P Sbjct: 1514 EENGTTGSSKHS-KSESPSDSPRS 1536 >gi|301623019|ref|XP_002940819.1| PREDICTED: hypothetical protein LOC100135124 [Xenopus (Silurana) tropicalis] Length = 676 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 1/156 (0%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 + + ++ GS A + +E + E+ ++ + Sbjct: 310 VEMDSSDSPSKNETGSKRTAGKSKGSDSEDEAEETDTRLETDRESEEESKAKRAKSAGSA 369 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 ++ + + D+ SD Q+ +D P T+ E+ A Sbjct: 370 TLQKGGEKVKAAQKRRKADSEGESDNGRSQSESEDEMPKKNSPKKETDSESAESSASERD 429 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + +N K++ K+RK Sbjct: 430 SDSESEKESAGQKKR-KANGRKAKSDKESGSAKKRK 464 >gi|254563182|ref|YP_003070277.1| hypothetical protein METDI4845 [Methylobacterium extorquens DM4] gi|254270460|emb|CAX26460.1| conserved hypothetical protein; putative pseudouridine synthase-like domain [Methylobacterium extorquens DM4] Length = 669 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 12/172 (6%), Positives = 27/172 (15%), Gaps = 14/172 (8%) Query: 565 IEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+ P + H+ + +D P + + + Sbjct: 392 VERLQPSPEKPAPEPHRRVRFRNEEERSAPRDRAREDRPRQDRPGQDRPREDRPRSEGPR 451 Query: 624 STGVIRKRR-------------RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP 670 +R R RRR + E Sbjct: 452 ENRARDERPGRDEFRRGAPAGDARPRRREAGEAAPAERRGPPRERPSDFEGRPPRERSEG 511 Query: 671 SDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + + + R Sbjct: 512 RPQRDFHGDSRERGEGAPRRERPSEGRPPERRGPPRDRPRAAEGERPARPPR 563 >gi|300795456|ref|NP_001178668.1| smoothelin-like protein 1 [Rattus norvegicus] Length = 470 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 8/167 (4%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 +EK + N K SD + ++ E + + + + + Sbjct: 144 LEKQKVDEKETNLESKEKSDVNDKAEPESKEDAGAEVTVKEAETESQKKADVKDQAEPQL 203 Query: 625 TGVIRKRRRRRRRR-----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 V K R + P + + G ++ VI S + + E +L Sbjct: 204 QEVDGKEARSDTKELVEPGSPTEEQEEQGKENESEERAAVIPSSPEDWPESPTDEGTSLS 263 Query: 680 ENG---AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 +G + S S E+ S + P KK R+ Sbjct: 264 PDGLGPESTASGETSASASESSPSEVPESPTEPLPSEKKKERAPERR 310 >gi|268570078|ref|XP_002648411.1| Hypothetical protein CBG24674 [Caenorhabditis briggsae] Length = 1435 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 4/109 (3%) Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 ++D+ + E +RRR R + + V + + +PS+ Sbjct: 959 VEDDFIEMEDDSSDEERRRYTRETKESRRSSKQATKRRTP----VRESAKRHSPKPSERA 1014 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + PP S P M ++ + R+ Sbjct: 1015 GNVRKSKSTEDRRRRSTEDTPPPSAPPMSEERRKMLKRQERMHKAEERR 1063 >gi|326679416|ref|XP_001923475.3| PREDICTED: hypothetical protein LOC407619 [Danio rerio] Length = 1551 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 20/234 (8%), Positives = 59/234 (25%), Gaps = 2/234 (0%) Query: 490 AGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVS 549 +++S + + E+ ++ + + S++ + R +E E + Sbjct: 790 RETRKNESEMKEARKNESEKRAIRNESEKRETKSQSEIKESEKREARN--IESEKKEAKK 847 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 I+ + ++ E +++ + + EA + + Sbjct: 848 IDSEMKQARKNESEKKEARKSESEKKEAERVETRKTESEKKEVRKSESEKKEAERKLERK 907 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 E + E+ ++ RR ++ +A + Sbjct: 908 SESERKEAKKSESENKEARGNESEKKGARRSESEKKEARQSESEKKEARRSESEKRENRR 967 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 T + + + K+TR + K Sbjct: 968 SESEKKEARRNESEKRETRSESEKRETRRNESEKREPRWRESEKKETRRRESEK 1021 >gi|303248244|ref|ZP_07334507.1| translation initiation factor IF-2 [Desulfovibrio fructosovorans JJ] gi|302490382|gb|EFL50293.1| translation initiation factor IF-2 [Desulfovibrio fructosovorans JJ] Length = 971 Score = 37.6 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 37/142 (26%) Query: 581 VGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP 640 + QA S + E V + E+ + Q+ + E + RR+ RRP Sbjct: 180 EVEERQAASASETTEAVAETPEAPEATAGETPAEAQEASKAPEEAAAEPGEKDRRKPRRP 239 Query: 641 ATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 + + + + + G G P + Sbjct: 240 EPSSAPKVRIISMPDPKKTPPPAPRRPAGEAPRPGSRPGPGGRPGPGAPRFGEGPRPAGR 299 Query: 701 EMESSNSSSDPIVKKTRWWKRR 722 + + K R RR Sbjct: 300 PVPGMPPAPGDDASKKRKKDRR 321 >gi|238578643|ref|XP_002388787.1| hypothetical protein MPER_12155 [Moniliophthora perniciosa FA553] gi|215450389|gb|EEB89717.1| hypothetical protein MPER_12155 [Moniliophthora perniciosa FA553] Length = 610 Score = 37.6 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 21/250 (8%), Positives = 61/250 (24%), Gaps = 18/250 (7%) Query: 488 KGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRAT------IVE 541 +G+ ++++ + + + + ++ + L +K + Sbjct: 217 EGSTAVKNEIHEGQKRVEQEAAKAAKAQSKRLKGKSYREAAEKLETEKEPEDSATVEVSL 276 Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIE------ 595 E + + + + P + + P Sbjct: 277 TEKKATRFVL----DSVVIPPYDKSVSPPPDSSAPEDDTDSDTQRRPKRQAATRRAVAAL 332 Query: 596 -CVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH-HDAGVVSDV 653 +DE K S + + + R+R + T+ + S Sbjct: 333 SDDNEDEGSSGEGKKTSRKRTSKSKPAAHQKPPTRRRAKADDSDESFTEDTSEEEDDSAS 392 Query: 654 SSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 + D + + + + D+ + P++ + Sbjct: 393 DVMSEDEDAAPPKKKTKPTKPAKPVKKLSVSTDSGTDDMDVDDEDKPKVAEKGTKRKGPE 452 Query: 714 KKTRWWKRRK 723 R K+RK Sbjct: 453 DDDRPAKKRK 462 >gi|109947059|ref|YP_664287.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba] gi|109714280|emb|CAJ99288.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba] Length = 552 Score = 37.6 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 12/246 (4%) Query: 58 FVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQTDSEAVAD---- 105 FVD G + GFL EI D Y + ++ + ++ Sbjct: 301 FVDIGNDIEGFLHVSEISWDKNVSHPNTYLSLGQEIDVKIIDIDPKNRRLRVSLKQLTNR 360 Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 + +E + D + Sbjct: 361 PFDVFETKYQVGDVIEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I ++ K + + + + + ++ G I + Sbjct: 421 IKVKILKINKKDKKVSLSAKHLLTSPTEKFAQKHKMDSVIQGKVVSIKDFGVFIHADGID 480 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + + E+ G + ++ +++ L R + A N+ Sbjct: 481 VLIKNEDLNPLKKDEIKMGQEITCVVVAIEKSNNKVRASVHRLERKKEKEELQAFNTNND 540 Query: 286 HLVYEE 291 + + Sbjct: 541 KMTLGD 546 >gi|294496457|ref|YP_003542950.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219] gi|292667456|gb|ADE37305.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219] Length = 1173 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 8/247 (3%) Query: 471 RIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLY 530 RI + + ++ S ++ E + + + + + Sbjct: 685 RISEELTKLESRRSNAINKLDTTEGHISSTNKEIQQYENEVSRKQMQFEEIGNRGETLEK 744 Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 LLN K + + E + + + K E+ +Q + + +DS+ P Sbjct: 745 LLNSKDEELKQIEEERQ-QMRTEMNETVEKKEHLEEREQSLQQNILQIEEKLADSEIPEL 803 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 +K E + ++ L + DI I + E + + R + A + Sbjct: 804 NKQAEDLDEELRRLDGR----IRDIDGQINALELDKKYATEKMEQNREQIAQMDEKKRTL 859 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP---PVSTPEMESSNS 707 + S + +E L E + + S Sbjct: 860 KERIEELKNKITSLESELEEKKQREEELTGELRQLQGERENKETAYSTQRDEVDRVKSRY 919 Query: 708 SSDPIVK 714 K Sbjct: 920 EKAENQK 926 >gi|212540748|ref|XP_002150529.1| 26S proteasome regulatory subunit Rpn2, putative [Penicillium marneffei ATCC 18224] gi|210067828|gb|EEA21920.1| 26S proteasome regulatory subunit Rpn2, putative [Penicillium marneffei ATCC 18224] Length = 1118 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%) Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 + E+ E ++ ++S + R +RR +++RR + D VS Sbjct: 894 PEQQVKADEAPEKVKTAVLSTTNQAKRRAQRREKQQRRESMDVDQTPTTPKVSGQLPERM 953 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP--------PVSTPEMESSNSSSDPIV 713 ++ + ++ + E G E V P + + +P+ Sbjct: 954 ETDESAVKEGEEAKEATKEEGQKKKAEKEKVGYELENMSRVLPAQLKYLTFPDPRYEPVK 1013 Query: 714 KKTR 717 + T Sbjct: 1014 RPTG 1017 >gi|156093423|ref|XP_001612751.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148801625|gb|EDL43024.1| hypothetical protein, conserved [Plasmodium vivax] Length = 1656 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 44/173 (25%), Gaps = 16/173 (9%) Query: 556 IELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-------EALLPIPK 608 EL + +E+ +A +A E ++ E K Sbjct: 1181 EELPVEELPVEEAPKEEAPREEPPIELPPVEAADQLVATEEGLEEGTKESAIEGEDEEAK 1240 Query: 609 SESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH---------HDAGVVSDVSSIQNV 659 + + + + +EE KR+ + RR G V + Sbjct: 1241 GATKKKVSEKSKTEEKRKKDVKRKIKERRIDQMYKELSLFNLDFLSTGGKVKASKGEKKA 1300 Query: 660 IDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + DIT ++ + S S N++ D Sbjct: 1301 RRGAPGGKGAKKDITKGGKEGRKEKKQSKQEETQKEQTSGEPQSSENTACDEE 1353 >gi|326671393|ref|XP_684139.4| PREDICTED: hypothetical protein LOC327618 [Danio rerio] Length = 1899 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 48/150 (32%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 K +P + K ++ ++E+L P ES E+I + S+ES Sbjct: 621 KDAPSKESKEDSMKDTPSKESNESLLKESKESKEESLKDNPSKESKEEILKDTPSKESKQ 680 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 K + + + + + ++ + P + + + Sbjct: 681 ESLKDTPSKESKGESLKDAPSKESKESLLKESKESKEESLKDPPGKESAKSKDDKTKALS 740 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + I + + +++ DP K++ Sbjct: 741 KKESLEDISNEKSAKSLKDDATKDPSKKES 770 >gi|167918518|ref|ZP_02505609.1| SRM102 [Burkholderia pseudomallei BCC215] Length = 514 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 37/145 (25%), Gaps = 2/145 (1%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + + + I+ V + E + ++ +R Sbjct: 296 QVHHAADRARGRQRGSRHAARIDRVERRAVERAAEAVEKPPRQPVHRGDDDRARPDERRD 355 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS--DITNHNLLENGAHGFTENY 690 R +RR+ D ++ ++ V D D + + Sbjct: 356 ARSKRRQRVRLQRDDDIILFAERVRVVARAQRDRRFAARLADDSQPAPAQRIERRAARKR 415 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKK 715 P + +DP ++ Sbjct: 416 AHVPARAREPRRKQPADRADPDDRR 440 >gi|126335335|ref|XP_001371550.1| PREDICTED: similar to splicing coactivator subunit SRm300 [Monodelphis domestica] Length = 2785 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 29/149 (19%), Gaps = 10/149 (6%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + P + S Sbjct: 623 RSRSRTPARRRSRTRSPVRRRSRTRSPARRGGRSRSRTPARRGGRSRSRTPARRGGRSRS 682 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RR R R R PA P + G Sbjct: 683 RTPARRGRSRSRTPARRGRTRSRTP--------ARRGRSRTRSPVRRGRSHSRTPQRRGR 734 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 + + T + SNSS P +KK Sbjct: 735 SGSSSERKNKSRTSQRSRSNSS--PEMKK 761 >gi|47223040|emb|CAG07127.1| unnamed protein product [Tetraodon nigroviridis] Length = 1817 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 38/174 (21%), Gaps = 18/174 (10%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL--------- 612 + E+ + + +N L K Sbjct: 577 DYEAERSHHRPKEARKDGHRNLEFDREFWKENFFKSDDTSESLAGKKDGEDSCALQKGSD 636 Query: 613 ----EDIQDNIVSEESTGVIRKRRR----RRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 ED S + R + ++ RR S + + DS Sbjct: 637 FSFKEDRYAKHASSKDKRTREDREKDKALKKERREEKIREPRPSEREGESRLPHFRADSG 696 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + E G E D + PV ++E K+ + Sbjct: 697 GEKPASGTTVDQEQSEPSEKGPREKTDKRL-PVKEKDLEKMEKRHLEREKRAKT 749 >gi|291234161|ref|XP_002737018.1| PREDICTED: RNA binding motif protein 16-like [Saccoglossus kowalevskii] Length = 1381 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 38/152 (25%), Gaps = 6/152 (3%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 F E+ + +++ S K+ E S ++ Sbjct: 1222 EFKRERSHERDESFHNRRNRDDRTRSVSETKDKETSLDKSPESTETDQASNNEVPKKEAI 1281 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 T R + A + + + S + + S + + Sbjct: 1282 LSPTTEERPIDKSINDHN-GNSSPVATHNDEGPKVNEKSNVSQEKNLPKSISVEEDQVCE 1340 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIV 713 A + + E+ES + S P+ Sbjct: 1341 KAVSS-----PKLENADSTEVESKSVESKPVE 1367 >gi|289719197|gb|ADD17187.1| SuAT1 [Theileria annulata] gi|289719199|gb|ADD17188.1| SuAT1 [Theileria annulata] gi|289719201|gb|ADD17189.1| SuAT1 [Theileria annulata] gi|289719203|gb|ADD17190.1| SuAT1 [Theileria annulata] gi|289719207|gb|ADD17192.1| SuAT1 [Theileria annulata] gi|289719209|gb|ADD17193.1| SuAT1 [Theileria annulata] gi|289719211|gb|ADD17194.1| SuAT1 [Theileria annulata] gi|289719213|gb|ADD17195.1| SuAT1 [Theileria annulata] Length = 488 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 28/110 (25%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV+ + S + E ++ P Q E G + Sbjct: 352 PVEIGSDEEDHESEISDIELLFSSDEEHETEKIAKPKKPRIRRPRKQKPESETEKVGKPK 411 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++R R R+++P + + + + I Sbjct: 412 RKRGRPRKQKPELEEPKRKRGRPKKLKPDERETDHIEVHKQVRIDKRKSK 461 >gi|296416611|ref|XP_002837968.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633863|emb|CAZ82159.1| unnamed protein product [Tuber melanosporum] Length = 867 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 51/212 (24%), Gaps = 18/212 (8%) Query: 514 YTAHNIIVHTHSDVVLYLLNQKRATIVEY----EARFGVSINVVIGIELADKLFYIEKGS 569 Y N +V DV + +++ + E G SI + ++ F + Sbjct: 643 YGGDNTVVDGGEDVAVGGEDEQDDLLSPLVPVEEWDGGKSILLSPDDSASNVHFSRRRRE 702 Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 Q + + K + + E + S +T R Sbjct: 703 ARQEMEESEKKRAEKKERKEIKRREEERRAGRHEPQEDCAAS------------TTVSKR 750 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 ++ ++ RR + + + + H + Sbjct: 751 RKEKKGERRDRRSGEGTES--GSSTKRGRSRRRGEGEEQDGEREKKEHKERKDEHRERKE 808 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 S E KK + W R Sbjct: 809 ERESRREERESRREEKERELREKDKKDKSWSR 840 >gi|302664485|ref|XP_003023872.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517] gi|291187891|gb|EFE43254.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517] Length = 691 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 42/172 (24%), Gaps = 12/172 (6%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTG---------HKVGSDSQAPSYDKNIECVWQDEAL 603 E+ ++ S+ + P + VW++ Sbjct: 240 EHEALFETPEQEQERVREADKMLEKSGLEEPPAHLEGSRSEEEGPKQRFPSKDVWEEAPE 299 Query: 604 LP--IPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH-DAGVVSDVSSIQNVI 660 E+ D + + E+ + R R+ R +T+ D ++ + Sbjct: 300 SQQLTTAVEAPADSEKSEKPEKPSLPSLPPRPSRQPDRSSTEEQGDISPTKTQTTSPTEL 359 Query: 661 DDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + P E +I + + + S P Sbjct: 360 KKRPSIPDRPKPQVPQRPTRKKGQESGEPLSKTISGENADDAAPPATKSKPA 411 >gi|195354716|ref|XP_002043842.1| GM17783 [Drosophila sechellia] gi|194129080|gb|EDW51123.1| GM17783 [Drosophila sechellia] Length = 2278 Score = 37.6 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 45/187 (24%), Gaps = 18/187 (9%) Query: 553 VIGIELADKLFYI--------EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 F + EK + S A + + + Sbjct: 920 ESDESKETPEFEVPTTVAPAGEKIPTSSITPDEEPTATSAPVAKPDEDVEKETSTEIPTD 979 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRP----------ATDHHDAGVVSDVS 654 SE ED + E + + +D A Sbjct: 980 TPASSEEDEDSSTDQTPSEMPEKKPETPAQTPEEEEDIVGATAAPTTSDEVPAVQRLPEE 1039 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + + S + ++ D T ++ TE + + E + ++ + ++ Sbjct: 1040 VLAEIPQPSTETGIKQQDETTGAPIDRKEPYVTEIDEEATTVAPISEKDEKSTEEEKSME 1099 Query: 715 KTRWWKR 721 W+R Sbjct: 1100 AEANWRR 1106 >gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] Length = 499 Score = 37.6 bits (85), Expect = 7.6, Method: Composition-based stats. Identities = 13/148 (8%), Positives = 29/148 (19%), Gaps = 2/148 (1%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 A +LF IE+ + P + + + P E+ Sbjct: 352 ASELFAIERLIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGHTA 411 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN--VIDDSFDMYMEPSDITNH 676 KRR + ++ + + Sbjct: 412 EKKNSGGNNKPKRRFNSDNKNGKGENKSGKGGAGKPKGNRDGQARSNGKPSGNRKPNNKP 471 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMES 704 + + N P++ Sbjct: 472 AGAKPSNGKPSGNKPSGQRRKPRPQVAK 499 >gi|331251926|ref|XP_003338544.1| hypothetical protein PGTG_20190 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309317534|gb|EFP94125.1| hypothetical protein PGTG_20190 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1775 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 23/212 (10%) Query: 487 CK--GAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA 544 C G + L +E ++ + V +L+ T+ E E Sbjct: 1576 CNLPGRSLNLDGNPAPPMTLPEAQEEEVRQITETVRSAWDPAVAQHLI-----TLDEAE- 1629 Query: 545 RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALL 604 ++ + + + + + S SQ P + + Sbjct: 1630 -------------MSPDVSAADAMRGLSIDQSQPAQGTSGSQRP--PDSQKDKEPTPPPN 1674 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSF 664 P S + ++ S++S I +R +++ R+P+T + S S + Sbjct: 1675 AQPSSAANKENPAPPSSDQSDLPIPRRSKKKAPRQPSTPPSEPQDSSVGSGKNRQPTPTQ 1734 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 E D + N P Sbjct: 1735 YSDDEEEDEDEEEDEDGDESAEERNRRRKEPK 1766 >gi|238588514|ref|XP_002391747.1| hypothetical protein MPER_08780 [Moniliophthora perniciosa FA553] gi|215456841|gb|EEB92677.1| hypothetical protein MPER_08780 [Moniliophthora perniciosa FA553] Length = 376 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 13/166 (7%) Query: 565 IEKGSPVQALVNT----GHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV 620 +E+G S DK + + PI + Sbjct: 84 LEEGDSSDLSDPPFPITPSSSSPLLAPESSDKPSRPSLKLDLAAPITDGSTSVPSSAASN 143 Query: 621 SEESTGVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNH 676 + + K+ RR R D +A +S V S D +E S +T+H Sbjct: 144 AAAPSNGRSKKLFTSMRRPSMRSETADGPEANQLSAVEDKVPT--PSIDASLETSSVTSH 201 Query: 677 NLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + S+PP E + +P K + W+KRR Sbjct: 202 GQVNGSGSRSPSPHPASVPP---RETKEKEKEKEPHRKPSGWFKRR 244 >gi|71755163|ref|XP_828496.1| lectin [Trypanosoma brucei TREU927] gi|70833882|gb|EAN79384.1| lectin, putative [Trypanosoma brucei] Length = 545 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 12/120 (10%), Positives = 31/120 (25%), Gaps = 2/120 (1%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + A +K + + A + + E+ E Sbjct: 351 ANEGEKPLHEEKVEQHDAEKQEKEHKEEEKQNADKHHEEGKRDEEEHQQAEEREEDKQEG 410 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN 689 +R+ RR+ ++ + + ++ + E E A E+ Sbjct: 411 RRQSPNPRRKHRSEDQEEENHKGKRTSESKKRSAESTNDEKEVSGTD--EEEAAELRHES 468 >gi|149640554|ref|XP_001507864.1| PREDICTED: similar to KIAA1315 protein [Ornithorhynchus anatinus] Length = 1963 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 44/171 (25%), Gaps = 1/171 (0%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 E + + + S ++ + L + + Sbjct: 316 PDPEYKSPHVSSVREKESSIRERSHQRGDSQGDERVERQSERSQNLNRKELKSYFKDDRK 375 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG-VVSDVSSIQNVIDDSFDMYMEPSD 672 SE+ R+ R + D + + PSD Sbjct: 376 SDPKAKFSEKDEEQRRRCGRGAIPHPRSEMGRDPHWSTKGHPEERRGREGDGKRDRGPSD 435 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + + + + + N+ S+ + E NS S +T ++R+ Sbjct: 436 QSFWDGRPSPSTSSSRNHRRPYSNESSSKHEWENSYSKAERHRTEEKRKRE 486 >gi|332814858|ref|XP_515952.3| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 4 [Pan troglodytes] gi|332814860|ref|XP_001157639.2| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 2 [Pan troglodytes] Length = 908 Score = 37.6 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 18/205 (8%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + + E + + Sbjct: 718 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 763 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D S D + + +++R Sbjct: 764 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 823 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ + S D S M ++ + +NGA E Sbjct: 824 GERRNSFSENERHTHRNKDSENFRRKDRSKSREMNRKHSGSRSDEDRYQNGAERRWEKSS 883 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 884 RYSEQSRESKKNQDRRREKSPAKQK 908 >gi|289582242|ref|YP_003480708.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099] gi|289531795|gb|ADD06146.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099] Length = 1189 Score = 37.6 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 61/217 (28%), Gaps = 7/217 (3%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEA-RFGVSINVV 553 + I R E+ L+ + + + + I + E+ R + + Sbjct: 295 DLEDLNAEIERKGEDEQLRIKSEIEEIKGDISRLEDKIEASEEQIEDAESTRREAFVQID 354 Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 E ++L + ++ ++ + I+ V + L +E Sbjct: 355 RKQETIEELEDEMREHKLEKAQLKTEIQERKTKRDELEAEIDAVDTEFDELKADLAERKS 414 Query: 614 DIQDNIVSEESTGVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD--MY 667 D+++ + + R RRR ++ ++ ++N D Sbjct: 415 DLEEAKTEKNDRQREQDRLLDEARRRSNTISEKENTIEERRKELPELENRRSDLERELEK 474 Query: 668 MEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 E + ++++ + + Sbjct: 475 AEKNRANISEVVDDLKTEKRRTQSEMDELDDKIQAKQ 511 >gi|260827090|ref|XP_002608498.1| hypothetical protein BRAFLDRAFT_126633 [Branchiostoma floridae] gi|229293849|gb|EEN64508.1| hypothetical protein BRAFLDRAFT_126633 [Branchiostoma floridae] Length = 1727 Score = 37.6 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 40/149 (26%), Gaps = 6/149 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E V + + +D + E L I + I+ + + Sbjct: 1055 EGDKNVSYFTSRVMHAERPTSQEGWDSSDEDTLDIRPLPNIMDLPKIPKIRQTVTTSREK 1114 Query: 626 GVIRKR----RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN--LL 679 + + + ++RRR + H + + D+ + + + + Sbjct: 1115 EKAKDKSSSYKGKKRRRDSTVEGHQKERTKEKKRDREKRKDTGEQAKKRKSDAEEDVSVS 1174 Query: 680 ENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + + S S + + S Sbjct: 1175 NSSRRKRMKAKRSSSRRQSREREKRRDES 1203 >gi|195108175|ref|XP_001998668.1| GI23508 [Drosophila mojavensis] gi|193915262|gb|EDW14129.1| GI23508 [Drosophila mojavensis] Length = 3615 Score = 37.6 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 10/167 (5%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL-EDIQDNIVSEEST 625 K S + K +++ S + + EA+ I ++E I ST Sbjct: 3035 KASAEETHELPERKTTRNTRKASAETVEQHEPAKEAMDVIEEAEEPLSKILRVEEPAAST 3094 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 I +RR RR+ VV+ S + EP+++ + Sbjct: 3095 TPIIRRRGRRQSVNAEDAPPQDLVVATSSRRGRKATTDTETPAEPAEVKPKRRGRKASAD 3154 Query: 686 FTENYDV---------SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 T D P + E S+++ + KKT + RK Sbjct: 3155 ETHTDDAEPAKKLAKRGRKPSAEVEHHDSDATEPAVEKKTAMRRVRK 3201 >gi|145542899|ref|XP_001457136.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424951|emb|CAK89739.1| unnamed protein product [Paramecium tetraurelia] Length = 1878 Score = 37.6 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 39/150 (26%), Gaps = 1/150 (0%) Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 IE+ + + D Q + +E ++ E+ + Q + Sbjct: 452 IEQDNRQNNKHTSQESSNLDEQEDINYQKLEDEKTNDVEQQGET-ENNKLEQKENQEIKK 510 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 +K ++ ++ ++ + SS Q + + N+ Sbjct: 511 VDSEQKSENKQVEKQEISEVKQVEQDQNKSSSQQNEEVIQQSNKQSEINNNNQEQSKSKS 570 Query: 685 GFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + I + + +K Sbjct: 571 QLNHMQEGQIETHEDFKAIPDSLKQTTQIK 600 >gi|308804599|ref|XP_003079612.1| putativ (ISS) [Ostreococcus tauri] gi|116058067|emb|CAL54270.1| putativ (ISS) [Ostreococcus tauri] Length = 417 Score = 37.6 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 1/139 (0%) Query: 584 DSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATD 643 + + + + +DE + + + E + ++ES KR++ RR R T Sbjct: 4 EPPSSTVHPKPDSSDEDEDERHVAERRTKEAPLPSAAAKESVVKREKRKQEARRARDGTL 63 Query: 644 HHDAGVVSDVSSIQNVIDDSFDMYM-EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEM 702 +A + S + P + ++ D P Sbjct: 64 RSNASSRVRAREDVSCATSSRALDAFPPRQLRKARSACTACCEKQKDVDAPAPERKRKMT 123 Query: 703 ESSNSSSDPIVKKTRWWKR 721 + + +K R +R Sbjct: 124 KREKLAEAIEARKKRKAER 142 >gi|325972607|ref|YP_004248798.1| transcription termination factor Rho [Spirochaeta sp. Buddy] gi|324027845|gb|ADY14604.1| transcription termination factor Rho [Spirochaeta sp. Buddy] Length = 645 Score = 37.6 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 5/118 (4%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + LV T + S+ + + + + ++ + SE++ D ++ + + Sbjct: 2 SSEELVQTEAALSVPSEPDKAKRPVRRITRKKSPVVAKASENVADQSAVQEEDKESSEQK 61 Query: 630 KRRRRRRR-----RRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 +RR R ++ R + D ++++ + P T E+ Sbjct: 62 RRRGRPKKATTKQREDRSQAQDDQQPQLDLNVEDRNQSVREDSFAPVQQTQGETQEDS 119 >gi|169607431|ref|XP_001797135.1| hypothetical protein SNOG_06771 [Phaeosphaeria nodorum SN15] gi|160701407|gb|EAT85422.2| hypothetical protein SNOG_06771 [Phaeosphaeria nodorum SN15] Length = 556 Score = 37.6 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 57/226 (25%), Gaps = 24/226 (10%) Query: 504 LRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLF 563 L + ++ +V L ++RA E + Sbjct: 75 LHEEQLARAAEEHKRVLQSAELEVQRITLEEERAQARRLE----------------AQHQ 118 Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 IE+ +A + + + + + L ++ + + +E Sbjct: 119 EIERLKREKAQQEAEAQRRALEVKQREAEAARQAQEHQRQLEAAEARIKAQQEQDAAAER 178 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R+ + + A A + + Q + P+ IT + A Sbjct: 179 QKKEKEEADRKAKEAQDAAARAQAQQTPQIQAPQPTQVAAPIAAPAPTAITTTPSSSSRA 238 Query: 684 HGFTENYDVSI--------PPVSTPEMESSNSSSDPIVKKTRWWKR 721 N + ++P+ +K +R Sbjct: 239 TAANVNQIHAKYLELHSRMKQFRVAFANEHKQKNNPLKEKVGDTRR 284 >gi|239607042|gb|EEQ84029.1| Pal1 cell morphology protein [Ajellomyces dermatitidis ER-3] Length = 527 Score = 37.6 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 31/116 (26%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + N S S + + E K I D + Sbjct: 109 RRPALPRPENVPPSRPSLSDDKASSRRPARRPSKEESQSRSKGHGRPPIGDIFADPKEPS 168 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 R +RR RR + + + + + + +P D + + NG Sbjct: 169 KSRNQRRPRRNSDSSLMDIPSRPIDPEAERRRRERRQRERDAKPKDGKSRSKRSNG 224 >gi|221125712|ref|XP_002153929.1| PREDICTED: similar to Arginine/serine-rich coiled-coil 2 [Hydra magnipapillata] Length = 406 Score = 37.6 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 32/160 (20%), Gaps = 5/160 (3%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + T +++ S ++N +++ Sbjct: 31 QDDKKKTGTVWDRKDKNRSLSPERNKRRNSSPSPRRKNLSPSPRRKNLSPSPRRKNSSPS 90 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 +R+ R + S + S Sbjct: 91 PRRKNLSPSPRFKNSSSSPRRKNSSLSPRRKNSSPSPRRKNLSPSPRRKNSSPSPRRRNS 150 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTR-----WWKRRK 723 + TP + + S KK KRR+ Sbjct: 151 SLSPRRKRSRTPPRKRHSRSRSFERKKKSRSRSPDRKRRR 190 >gi|123468456|ref|XP_001317446.1| AT hook motif family protein [Trichomonas vaginalis G3] gi|121900180|gb|EAY05223.1| AT hook motif family protein [Trichomonas vaginalis G3] Length = 592 Score = 37.6 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 52/182 (28%), Gaps = 3/182 (1%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELAD---KLFYIEKGSPVQALVNTGHKVGSDSQAP 588 L +K +++ E E + + + +S Sbjct: 188 LEEKSSSLHEKENNNKEQEIKAPEPTEISGNEAEQKLNENNESNKQNQKDQPRPDESNKE 247 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 + K E + + D D +++ +++R R R+ Sbjct: 248 NLTKTPEKTNNSSDSPVLLQQPLKGDKNDTEGTDQPETPTKRKRGRPRKNPNGESKQSTP 307 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 S + + S P ++ N++ + H + D + + + E +N+ Sbjct: 308 KKPLQSPKNSPLTVSSVNAETPKNLQNNSPKTSEKHEELQKIDDATKENTDNKQEINNNE 367 Query: 709 SD 710 + Sbjct: 368 TK 369 >gi|330914644|ref|XP_003296721.1| hypothetical protein PTT_06899 [Pyrenophora teres f. teres 0-1] gi|311330996|gb|EFQ95177.1| hypothetical protein PTT_06899 [Pyrenophora teres f. teres 0-1] Length = 1110 Score = 37.6 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 1/116 (0%) Query: 555 GIELADKLFYIEKGSPV-QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 ++ + E+ + S++ + + P + Sbjct: 980 EKDVVQDHYAAERERNARERDSRERVVEKVPSKSLHSRISSSSRPSLSSKRPRDDKDDEV 1039 Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 + +E R +RR+ AT + + +N + E Sbjct: 1040 PVPKGPKAEAKPPTGPANHRDKRRKSGATGDDNIANLFTAGLRKNAKARRGGVRTE 1095 >gi|301606165|ref|XP_002932706.1| PREDICTED: hypothetical protein LOC779458 [Xenopus (Silurana) tropicalis] Length = 2134 Score = 37.6 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 8/178 (4%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 V I +V + L S ++ S + V ++A+ Sbjct: 1871 VPIALVASESTETPKNKRGRRKANTQLEKVTDSDLSVTEVSSKLDLVPEVVNEKAVNKRN 1930 Query: 608 KSESLEDIQDNIVSEESTGVI--RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFD 665 + + S ++R RR A D+ + + +S + Sbjct: 1931 TGKRNLKSSSDSDSSSKAVEPVLETITQKRGRRGAAAKSLDS------ETTEVKTVESAE 1984 Query: 666 MYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + ++ + E + N+ + K+R +RK Sbjct: 1985 NVTSNKRRERAPSQKTNNPETSKTTTEPVNKNQATEAVAKNTDNAESPPKSRRGLKRK 2042 >gi|297734459|emb|CBI15706.3| unnamed protein product [Vitis vinifera] Length = 1006 Score = 37.6 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 60/210 (28%), Gaps = 25/210 (11%) Query: 539 IVEYEARFGVSIN-VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECV 597 + + E + + V + +EK + + + G K S+ D+ Sbjct: 265 LADKEQKGKIRKRKVTPSKSTSPGETSMEKPAKKRKQTSVGDKQRPSSEVEGEDEVEASA 324 Query: 598 WQDEALLPIPKSESLEDIQD---------------------NIVSEESTGVIRKRRRRRR 636 +D++ ++++ D + + R ++ Sbjct: 325 SRDDSDEVEDNDTAMKEQSDQEETKSEEEEEEKKEQKTTKKASSRKSVKEDSGAKHRGKK 384 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTEN-YDVSIP 695 + A + SS + D+ D + P + ++ D + Sbjct: 385 ASASRSVKSPAKLTKKSSSSTSKKADADDTSVAPKSKESSAKKRKAEKESQKDQSDPAKE 444 Query: 696 PVSTPEMESSNSSS--DPIVKKTRWWKRRK 723 ++ + S + + K + K+ K Sbjct: 445 KTASKKRSSRATEKVSSKDLGKGKTSKKAK 474 >gi|154314361|ref|XP_001556505.1| hypothetical protein BC1G_05274 [Botryotinia fuckeliana B05.10] gi|150848919|gb|EDN24112.1| hypothetical protein BC1G_05274 [Botryotinia fuckeliana B05.10] Length = 556 Score = 37.6 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 16/156 (10%), Positives = 45/156 (28%), Gaps = 1/156 (0%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + + + + + S +P+ + + P ++S ++ + Sbjct: 357 ENPEGTSDDKADDEKADSDIPEEDSKEASPAVQEEDKVEDDSSKENATPVADSDMEVDEP 416 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 E++ K+R R+R R + + + + I P N N+ Sbjct: 417 KEDGEASASA-KKRSRKRVRNNNRLEAEDTPTTPATPASSKIQKIKTPTATPLASKNQNV 475 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 V+ + + ++ K Sbjct: 476 KTPTKSPAQTKAAVAKKGRPPVKAANKAQTTPKSPK 511 >gi|198465273|ref|XP_001353572.2| GA15153 [Drosophila pseudoobscura pseudoobscura] gi|198150085|gb|EAL31085.2| GA15153 [Drosophila pseudoobscura pseudoobscura] Length = 1293 Score = 37.6 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 9/168 (5%) Query: 564 YIEKG-SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEAL-LPIPKSESLEDIQDNIVS 621 I+K + NT + + A + + KS+ ++ + Sbjct: 911 TIDKIQEKAAKIGNTPEEGVVEKIASKRVGRPRKIKTPTSTPQDTIKSKIKKENPPEKEN 970 Query: 622 EESTGVIRKRRRRRRRRRPATDH----HDAGVVSDVSS---IQNVIDDSFDMYMEPSDIT 674 ++ V ++R R R+ + T+ G S+ SS + S + Sbjct: 971 ANTSAVAKRRVGRPRKSQTPTEDKPEIKPKGRRSETSSTTDKMTTRNTSEEKAKGEPQSK 1030 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E + S ++++++ K+T + R Sbjct: 1031 AAETRELVVMAKKKQLTKSTSVTEEDNGPTTSTAAAAAQKETLGRRGR 1078 >gi|268572101|ref|XP_002641234.1| Hypothetical protein CBG09100 [Caenorhabditis briggsae] Length = 1136 Score = 37.6 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 11/145 (7%), Positives = 34/145 (23%) Query: 560 DKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNI 619 + E+ + K+ + + + + +E + Sbjct: 449 QQQDKFERMEQERIRQEKEEKLREMERRRQLAEAEKARQAEIDRQAAIYAEQERMAMERE 508 Query: 620 VSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 E ++R R R+ + + + + E +L Sbjct: 509 RELERIQQEERKREMERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKQKIL 568 Query: 680 ENGAHGFTENYDVSIPPVSTPEMES 704 E + + + + E+ Sbjct: 569 EEERQRKIKEQMREMEKIRKEQEEA 593 >gi|327302548|ref|XP_003235966.1| beta-1,3-glucanase [Trichophyton rubrum CBS 118892] gi|326461308|gb|EGD86761.1| beta-1,3-glucanase [Trichophyton rubrum CBS 118892] Length = 928 Score = 37.6 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 49/202 (24%), Gaps = 40/202 (19%) Query: 555 GIELADKL----FYIEKGSPVQALVNTGHKVGSDSQAPSYDK--------NIECVWQDEA 602 + F + + + + D+ E + Sbjct: 66 DEGVHTPDEDDVFDDRRHRSRKREQRPSRDRQHRDRVRTRDERVAWDSATESEDIVDSRP 125 Query: 603 LLPIPKSESLEDI-------------------QDNIVSEESTGVIRKRRRRRR------R 637 + P + + + ++ES K+R R R R Sbjct: 126 IFARPPNANHSPRTDRRERDRDRERHSHYPSPRAGHKAKESPATSPKKRDRERDREGHNR 185 Query: 638 RRPATDH--HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIP 695 RP D + G + D + +D H E + N + Sbjct: 186 HRPRRDSTADEGGDRRLRDRRRRDYDTDQERKHNETDTRRHGRREKHTSNDSANSATVLL 245 Query: 696 PVST-PEMESSNSSSDPIVKKT 716 +++ N +D +KK Sbjct: 246 SSDALAQLDQLNRKADEDMKKK 267 >gi|313230126|emb|CBY07830.1| unnamed protein product [Oikopleura dioica] Length = 420 Score = 37.6 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 12/134 (8%), Positives = 31/134 (23%) Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 + +A + + ++T K +RRRR+ ++ Sbjct: 70 TAKDKSPMRSIKKASPARRTRKDSTPSDSSPPRRKATRRDSKSPQRRRRKDSSSVSPPRR 129 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 D + P + ++ D + S Sbjct: 130 TRMDSDTSPPRKKSMDSEKSPPRRKRKDSDTSPPRRKRVDSEDSPLRRRRKDSDASPPRR 189 Query: 709 SDPIVKKTRWWKRR 722 ++ ++R Sbjct: 190 KRIDSDESPHRRKR 203 >gi|302760881|ref|XP_002963863.1| hypothetical protein SELMODRAFT_80512 [Selaginella moellendorffii] gi|300169131|gb|EFJ35734.1| hypothetical protein SELMODRAFT_80512 [Selaginella moellendorffii] Length = 943 Score = 37.6 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 24/83 (28%) Query: 580 KVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRR 639 K + P D E + +A SE + ++ +++ + R RR Sbjct: 820 KPSRKGEEPKADIQKERDEKAQAKDAQYTSEPEDHATTKDDKDQRRSRDKRKDKSRDRRE 879 Query: 640 PATDHHDAGVVSDVSSIQNVIDD 662 ++ V + Sbjct: 880 ESSKERSKRKVRSFGISTKRATE 902 >gi|325686962|gb|EGD28986.1| translation initiation factor IF-2 [Streptococcus sanguinis SK72] Length = 930 Score = 37.6 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 6/124 (4%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + + + E P K+E+ ++ Sbjct: 58 ATAEKPAAAQPSPQKTPAKEAAPVKAEQTEAKVTAKPEAKTETAAPVKRPQSRNFKAERE 117 Query: 629 RK------RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + RR+++ R+P D + + D P+D ++ + Sbjct: 118 ARAKEEAERRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGR 177 Query: 683 AHGF 686 +G Sbjct: 178 RNGQ 181 >gi|108712009|gb|ABF99804.1| hypothetical protein LOC_Os03g62388 [Oryza sativa Japonica Group] Length = 664 Score = 37.6 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 14/169 (8%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 E D +G P ++ + + S Q + + + +++ Sbjct: 465 DQECNDPENQYHEGEPYDHVIEQEPERDARETGTSMKLRNRRKLQKDGIPEHTADDIMDE 524 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 S+E R +++ + + + S S D +E S Sbjct: 525 DFGEPPSDEQDNDSGDEYTARGKQKGRRKSREKNINKEPSRG--TKRTSGDSTIEESQKQ 582 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 ++ A + V PE KK RRK Sbjct: 583 KLQKNKSKASSGGQKKTSKDSSVEQPE------------KKLTHRIRRK 619 >gi|114661642|ref|XP_001163907.1| PREDICTED: retinoblastoma-binding protein 6 isoform 3 [Pan troglodytes] Length = 1540 Score = 37.6 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%) Query: 571 VQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRK 630 + K + + V + E I K + + E S Sbjct: 750 SEKDKRERDKPKAKGDKTKRKNDGSAVSKKE---NIVKPAKGPQEKVDGERERSPRSEPP 806 Query: 631 RRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 ++ + + + I + + T E ++++ Sbjct: 807 IKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 866 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 + + N + P+ K KR+ Sbjct: 867 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRK 898 >gi|157876204|ref|XP_001686461.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129535|emb|CAJ08078.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 941 Score = 37.6 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 3/148 (2%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + +V +A + ++ K+E Q+ +E RR Sbjct: 310 QELQKAEQVRIAEEAALQAEEARKDEKERLAEERRKAEEARLAQEAQRAEAQRTEEEVRR 369 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTEN 689 RR+ H DA S + + + E + + Sbjct: 370 AETRRKMEEQRHADAAAASASKRRKAAAEAQGRLNAERKQVLAKIDEERVRFRTAASDLI 429 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S + + ++ +T+ Sbjct: 430 TQQEVEKSSAVRRDKTVATELQKSMETK 457 >gi|321453432|gb|EFX64668.1| hypothetical protein DAPPUDRAFT_204585 [Daphnia pulex] Length = 1195 Score = 37.6 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 37/163 (22%) Query: 532 LNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYD 591 +KR + E R ++ E+ ++ K +Q Sbjct: 843 EEEKRMRKKQEEEREAFRTKQREEQHRLEESRRQEQEKLLKLREEFIEKTKKATQFNEMP 902 Query: 592 KNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVS 651 + + + D D I S + ++R+ R+ T+ Sbjct: 903 SEKAEKGKKSRKKKDDEDGFVTDGSDRIQSGDEGAGPPSKKRKAERKPRQTETKSRKKGK 962 Query: 652 DVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSI 694 + + + N + S Sbjct: 963 SGEERGRTKEKKGRSEGRGAKKGSGKKSSNDVDDGLSSKQKSK 1005 >gi|331224468|ref|XP_003324906.1| pol II transcription elongation factor [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309303896|gb|EFP80487.1| pol II transcription elongation factor [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1095 Score = 37.6 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 45/186 (24%), Gaps = 9/186 (4%) Query: 495 SQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVI 554 + S+LR E A+ + +R + E E I Sbjct: 903 QRKRYGESLLRRTSELSESQEAYESSEIAKIERARQERENERQRLAEAERLRLEEIAAK- 961 Query: 555 GIELADKLFYIE--------KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 EL K ++ K + G K N E + Sbjct: 962 NEELTRKRQEMQESVATWYIKQANSDNESEDGTKKKRKGGGGKRKNNKETGITIVPDDEV 1021 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 + E+ + + ++ + R R + D SD + N Sbjct: 1022 DEGSEQEEKKRKRKRTKKQSNQKEDQTNNRSNRAISTGEDENYDSDDAKPVNRSSKKKSG 1081 Query: 667 YMEPSD 672 + S Sbjct: 1082 KIYKSA 1087 >gi|227872638|ref|ZP_03990970.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841525|gb|EEJ51823.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 652 Score = 37.6 bits (85), Expect = 8.4, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 1/158 (0%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK S + + + A ++ E SE ++D S ES Sbjct: 487 EKKSARKIGTKASQEKHVEKSAEKSAEDSAKASTKEEKKQNQTSEKKAKVKDADKSVESK 546 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ + + R+ + + + + E ++ T G Sbjct: 547 TDLKATKEKPVRKSVKAKTGEEKSETKSTRAKTAEKSDKTKAGEKTNTTKEEKTAKTKTG 606 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + D + + ++ + S K + R+K Sbjct: 607 ARTSNDKTTEKSVKAKADTKKTESASAEK-SGRRGRKK 643 >gi|195400801|ref|XP_002059004.1| GJ15230 [Drosophila virilis] gi|194141656|gb|EDW58073.1| GJ15230 [Drosophila virilis] Length = 5756 Score = 37.6 bits (85), Expect = 8.5, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 49/181 (27%) Query: 531 LLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSY 590 L ++K + +R G S+ V + EK + + +S Sbjct: 3299 LKDEKSLPASKEASRPGSSVESVKDEHDKQESVKDEKSTEPSRRESVAESAKPESLKDEK 3358 Query: 591 DKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVV 650 + + E + + + R+ + D Sbjct: 3359 SLPASKEATRPGSVAESVKDEHEKPESVKNEKSTEPSRRESVAESTKLESLKDEKSLPAS 3418 Query: 651 SDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSD 710 + S +V++ D +P I + E+ S + + +S ++ Sbjct: 3419 KEASRPGSVVESLQDEQEKPESIKDEKSTEHSRRESVAESAKSESLKAEKSLPASKEATR 3478 Query: 711 P 711 P Sbjct: 3479 P 3479 >gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum] Length = 8645 Score = 37.3 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 19/188 (10%), Positives = 46/188 (24%), Gaps = 9/188 (4%) Query: 531 LLNQKRATIVEYEA--RFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 LL + + E SI + +V + Sbjct: 839 LLKSENDNSSDEEKVIESPRSIKKTDDENKINNHIE-------TQVVQEIVEEKQKPPTL 891 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 + + I S + +S + + +RR + Sbjct: 892 KMETEDNNGYTSPPGKTIQDSPIKRRGSSIKKTSDSLETVEDNKTDVKRRPSVKKTVENK 951 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 + + ++ S + S N +++ + + TPE + + + Sbjct: 952 IAVEEEKLEVKRRPSVKKNDDDSAPMEDNKIDDSRQPSMLSPVRTEGKTPTPEEKPAANK 1011 Query: 709 SDPIVKKT 716 + KK Sbjct: 1012 RLSVKKKK 1019 >gi|212527032|ref|XP_002143673.1| stress response protein Nst1, putative [Penicillium marneffei ATCC 18224] gi|210073071|gb|EEA27158.1| stress response protein Nst1, putative [Penicillium marneffei ATCC 18224] Length = 1258 Score = 37.3 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 9/102 (8%), Positives = 23/102 (22%), Gaps = 2/102 (1%) Query: 601 EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR--RRRPATDHHDAGVVSDVSSIQN 658 K E + + + + R++R +R+ + + Sbjct: 646 RKEAEKQKRLQEERERQAEIERKQREQKERERKKREDAKRKEVEEREAKEKRLRDKKAKE 705 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP 700 D I + + ++ S P Sbjct: 706 EQDRKLREEQAARIIEPSGKQRSESQSSSQAAVAGPKRASQP 747 >gi|148685342|gb|EDL17289.1| retinoblastoma binding protein 6, isoform CRA_g [Mus musculus] Length = 1623 Score = 37.3 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I D LF + + + S + DK+ + + K +S Sbjct: 800 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 859 Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R + P ++ + + I +V S E Sbjct: 860 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 919 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715 T A E V +++S S D KK Sbjct: 920 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 966 >gi|17228437|ref|NP_484985.1| hypothetical protein alr0942 [Nostoc sp. PCC 7120] gi|17130288|dbj|BAB72899.1| alr0942 [Nostoc sp. PCC 7120] Length = 300 Score = 37.3 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 39/137 (28%), Gaps = 3/137 (2%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVW-QDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + V+ + + + + +DE P + +++ S ++ Sbjct: 113 DDERPVSKNYSYNRRKYEAEVEDDYAPLPYEDEEEEERPVRARIRPSREDRSSRDNYYEE 172 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 + R+ RR + D + +S++ S + E+ + Sbjct: 173 QPPRKERRNTTERQEPTDKPRRRPTNRPTTRTSESYEQEDWGSASRQVDDWESSSSEV-- 230 Query: 689 NYDVSIPPVSTPEMESS 705 PE++ Sbjct: 231 RKPRRGNNNPRPEVDED 247 >gi|318081674|ref|ZP_07988987.1| hypothetical protein SSA3_34352 [Streptomyces sp. SA3_actF] Length = 475 Score = 37.3 bits (84), Expect = 8.6, Method: Composition-based stats. Identities = 16/156 (10%), Positives = 34/156 (21%), Gaps = 9/156 (5%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS---EESTGVIRKRRR 633 H +A D+ + + K ++ + + R Sbjct: 230 DQHAQRMKQKAAGVDRASKSKGARQDAKDRAKVARIKAQGERKQRIRDGRQAAKDKARDA 289 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEP------SDITNHNLLENGAHGFT 687 +R+RRR + + + + P G Sbjct: 290 KRQRRREEKEARTLLGDALAKTAGKRLRKRRKSLAPPIISKTGKKRRKEKPAPPPPRGVL 349 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + P + + + R W RK Sbjct: 350 DKVVKDTPKPPPTMPRAGAAKKKSAGGRRRKWSFRK 385 >gi|289719189|gb|ADD17183.1| SuAT1 [Theileria annulata] gi|289719191|gb|ADD17184.1| SuAT1 [Theileria annulata] Length = 488 Score = 37.3 bits (84), Expect = 8.6, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 28/110 (25%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PV+ + S + E ++ P Q E G + Sbjct: 352 PVEIGSDEEDHESEISDIELLFSSDEEHETEKIAKPKNPRIRRPRKQKPESETEKVGKPK 411 Query: 630 KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 ++R R R+++P + + + + I Sbjct: 412 RKRGRPRKQKPELEEPKRKRGRPKKLKPDERETDHIEVHKQVRIDKRKSK 461 >gi|157132741|ref|XP_001656118.1| hypothetical protein AaeL_AAEL012508 [Aedes aegypti] gi|108871092|gb|EAT35317.1| hypothetical protein AaeL_AAEL012508 [Aedes aegypti] Length = 1256 Score = 37.3 bits (84), Expect = 8.6, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 45/178 (25%), Gaps = 6/178 (3%) Query: 551 NVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSE 610 V LA + S ++L + DS D ++++ + + K + Sbjct: 828 VVKKEKILAISDLITSRPSRAESLAKRNKYIFGDSSDEDEDPTAPMFLKEDSKVRVMKFD 887 Query: 611 SLEDIQDNIVSEESTG---VIRKRRRRRRRRRPATDHHDAGVVSDVSSI---QNVIDDSF 664 E + + S+ R +R ++R R + D + Sbjct: 888 EDESVTTSEAKSTSSAVLPERRSKRSKKRNSRYSDDEDEKPKSKSKPERIVKNPPPPPKS 947 Query: 665 DMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 E D E + P +S + K + Sbjct: 948 VKVDESVDYEPPVNKNTRKRKAAEEKPPPVVDPPPPPPPEVKASKSKKIAPKSDPKPK 1005 >gi|327352752|gb|EGE81609.1| hypothetical protein BDDG_04552 [Ajellomyces dermatitidis ATCC 18188] Length = 616 Score = 37.3 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 6/181 (3%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E + +I + + + +K + Q + + Sbjct: 261 EEQLRRAIEESKEDTKSITDDLGSRRGKRSRSDSEANKHAAKRQRTGSPASSLSKHSNSV 320 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 P ES + ++ + R +R R TD ++ + + D Sbjct: 321 SHPPSDDESKPNTSTSLEGNGNRKTRGVARIQREREAQTTDKEPEKETAEPINRRKSRSD 380 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 EPS+ + + T++ TP + + SS+ P+ +KT R Sbjct: 381 RRKDDEEPSETVSPTKTGSVPPTITQSTP------DTPSVINEPSSTKPLTRKTGRPPAR 434 Query: 723 K 723 + Sbjct: 435 R 435 >gi|270012238|gb|EFA08686.1| hypothetical protein TcasGA2_TC006356 [Tribolium castaneum] Length = 3867 Score = 37.3 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 1/233 (0%) Query: 91 KESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVE 150 KE + T ++ +++ D D E +E++++ + + S + Sbjct: 1576 KECRESPTTPKSPGKELSDKDFLARLDLRSNEEVEKQKQRKESKDKKKLEEDETKKSETK 1635 Query: 151 DVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLM 210 K + R + K+R L Q + + + + + Sbjct: 1636 KDKHLEKSKSRE-DSRSEDKKCQKKDRTRKLTQNSSDNSDSDEPKKHSIFDIVDDEPAYI 1694 Query: 211 PNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMR 270 K + S K + + +E + R T + D + Sbjct: 1695 SMYDKVKARSCKNMQKQEEEKRQEKIKAKFSQLKQSRAKREEKKRSTSWDEDSDSDRERS 1754 Query: 271 LWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 + + N + E+ R++Y SE + + E + Sbjct: 1755 DKIDHKTKRGNKMLIMSSDEDEPRKSHKKREIYSDSDSERPRQIKSEHNETSE 1807 >gi|161484644|ref|NP_663464.2| hypothetical protein LOC224833 [Mus musculus] gi|205371871|sp|Q91Z58|CF132_MOUSE RecName: Full=Uncharacterized protein C6orf132 homolog Length = 1206 Score = 37.3 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 5/155 (3%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 PVQ + +Q S + + I +LE Q E+ G R Sbjct: 311 PVQEAPGASPEEEEATQKTSAPSPLPPSFNIRPASQIYPDRALEPEQPREPRPETPGSPR 370 Query: 630 -KRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 ++ + + + + +G ++ Sbjct: 371 LRQSEPQTNGQAGAPPPAPPLPPPAPPLPPPAPSLPPAAPPLPSTELAAPPSSGFMKTSK 430 Query: 689 NYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + ++ P P +SS+P+ W R+ Sbjct: 431 SNSPALKPKPKPPSVEDTASSEPVD----WRDPRQ 461 >gi|225427278|ref|XP_002278878.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297742135|emb|CBI33922.3| unnamed protein product [Vitis vinifera] Length = 480 Score = 37.3 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 3/148 (2%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + S P + + + S +R Sbjct: 123 RRQRARYDTPSPEPEPRPSDSGREGSDLSPPRQRQRRYHTPSPEPGSKPSGSDFSPSRRP 182 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT---EN 689 RR+ + D+ +SS + V S + P L +G+ + + Sbjct: 183 RRQTSADVERKNSDSPHFPHISSPRRVGRSSEHQDLSPPRKRRKGLGLSGSPDISPPRRS 242 Query: 690 YDVSIPPVSTPEMESSNSSSDPIVKKTR 717 P +S P + SS KT Sbjct: 243 TQTDTPDLSPPRKSRKDVSSSKEPSKTG 270 >gi|109100248|ref|XP_001100369.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 4 [Macaca mulatta] gi|109100250|ref|XP_001100463.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform 5 [Macaca mulatta] Length = 907 Score = 37.3 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 22/205 (10%), Positives = 50/205 (24%), Gaps = 19/205 (9%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + ++ + Sbjct: 718 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR---------------QEHRHQETRTERER 762 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D + + D + + +++R Sbjct: 763 SEKHRDQNSRDSNWRDPITKYTSDKDVPSERNNYNRVVNDRDQEMHIDLENKYGDPKKKR 822 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ + S D S M ++ + +NGA E Sbjct: 823 GERRNSFSENEKHRYRNKDSENFRRKDRSKSREMNRKHSDSRSDEDRYQNGAERRWEKSS 882 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 883 RYSEQSRESKKNQDQRREKSPTKQK 907 >gi|162142|gb|AAA30209.1| kinetoplast-associated protein [Trypanosoma cruzi] Length = 1052 Score = 37.3 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 47/157 (29%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + + + + + + ++ A + + + ++ + + Sbjct: 737 RKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEAARKQAEEEAARKRAEA 796 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 RK+ R+ A + + ++ + +++ E D E+ Sbjct: 797 AARKKACEEAERKRAEEEAARKQAEEEAARKQAEEEAARKQAEEEDARKQAEEEDARKQA 856 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 E + V + E S + KK R+K Sbjct: 857 EEEDARTRAEVQEEKAELSVKDRRKLAKKKIERYRKK 893 >gi|308498874|ref|XP_003111623.1| hypothetical protein CRE_03176 [Caenorhabditis remanei] gi|308239532|gb|EFO83484.1| hypothetical protein CRE_03176 [Caenorhabditis remanei] Length = 350 Score = 37.3 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 7/165 (4%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 ++ ++L ++A Y + DE + +++ + E Sbjct: 139 QRKRYRRSLETPEETQIRLAKALEYKRKKYDHETDEEQRARLERDAIRKRAERTNESEEK 198 Query: 626 GVIRKRRRRRRRR----RPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 +RK + RR + + + D +N + + + N Sbjct: 199 ARLRKSKAAEHRRNYLAKESEEKARIRREKDAERRRNSLKNESPEAAQERKAKNAARRRE 258 Query: 682 GAHGFTENYDVSIPPVSTPEMES---SNSSSDPIVKKTRWWKRRK 723 TE+ + + + +KT+ R++ Sbjct: 259 SLKKETEDETLRRRSRDAERRRLYLLNETDEQKERRKTQDAARKR 303 >gi|148685338|gb|EDL17285.1| retinoblastoma binding protein 6, isoform CRA_d [Mus musculus] Length = 1680 Score = 37.3 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I D LF + + + S + DK+ + + K +S Sbjct: 857 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 916 Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R + P ++ + + I +V S E Sbjct: 917 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 976 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715 T A E V +++S S D KK Sbjct: 977 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 1023 >gi|281205357|gb|EFA79549.1| hypothetical protein PPL_07600 [Polysphondylium pallidum PN500] Length = 1130 Score = 37.3 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 31/112 (27%) Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 L + ++E + + + ++R+ RR + + + Sbjct: 784 LENERQRSAIERQKQAEEERKKKAIEDQKRKEEENRRKLHEVEMERQRRQEAMRLKKKLE 843 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 D E I LLE+ E + +E + + K Sbjct: 844 QEDEEREQKKIAEQKLLEDQKKQLAEKQQLEKEQAEKDRLEKERLVKEQLEK 895 >gi|49482354|ref|YP_039578.1| immunoglobulin G binding protein A precursor [Staphylococcus aureus subsp. aureus MRSA252] gi|295426657|ref|ZP_06819296.1| von Willebrand factor binding protein Spa [Staphylococcus aureus subsp. aureus EMRSA16] gi|49240483|emb|CAG39140.1| immunoglobulin G binding protein A precursor [Staphylococcus aureus subsp. aureus MRSA252] gi|295129109|gb|EFG58736.1| von Willebrand factor binding protein Spa [Staphylococcus aureus subsp. aureus EMRSA16] Length = 516 Score = 37.3 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 44/176 (25%), Gaps = 8/176 (4%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ ++ E + + L + D+ P + N + +D Sbjct: 294 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDGN 348 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ N +E K + + N Sbjct: 349 KPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGNKPGK 408 Query: 663 SFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 D N + G T N + ++ + N +D + K Sbjct: 409 EDGNKPGKED---GNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 461 >gi|308478343|ref|XP_003101383.1| hypothetical protein CRE_13540 [Caenorhabditis remanei] gi|308263284|gb|EFP07237.1| hypothetical protein CRE_13540 [Caenorhabditis remanei] Length = 979 Score = 37.3 bits (84), Expect = 8.9, Method: Composition-based stats. Identities = 11/144 (7%), Positives = 29/144 (20%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + P + QD+ P + + Sbjct: 259 RQEDEAGPSDNQRSLPVRRTPAKRGRQDDETGPSGTQNTPRVRRTPAKRGRQNDEAGPSD 318 Query: 633 RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDV 692 RR + P + + + + T N + + Sbjct: 319 SRRPQNNPRQRTPKTPKNPRTPNTPKTPRTARSQKSQRTPNTPKNQNKWKGPRTSGKPRT 378 Query: 693 SIPPVSTPEMESSNSSSDPIVKKT 716 P + + + + + T Sbjct: 379 PNTPKTRRKQKWTKGMKNKKTGTT 402 >gi|302917950|ref|XP_003052551.1| hypothetical protein NECHADRAFT_2224 [Nectria haematococca mpVI 77-13-4] gi|256733491|gb|EEU46838.1| hypothetical protein NECHADRAFT_2224 [Nectria haematococca mpVI 77-13-4] Length = 592 Score = 37.3 bits (84), Expect = 8.9, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 36/155 (23%), Gaps = 8/155 (5%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + T + S P + + ++ + K Q +E Sbjct: 294 TRSHTNVKRQRTSSRSASPPAQPVEATSRDESDEESSTRSGAKKARNNKTQKAKTEKEDK 353 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R+ +R+ R + SD + V + P Sbjct: 354 ERQRQEAADKRKGRAERRRGEDSDPSDETPAPPVKPPAAKSIETPIVTE--------TPA 405 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 PP S P +++ K + Sbjct: 406 PPVQPVPDTPPASHPPTTNTHKRGGRNTHKKGKGR 440 >gi|258565933|ref|XP_002583711.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237907412|gb|EEP81813.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 1036 Score = 37.3 bits (84), Expect = 8.9, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 41/162 (25%), Gaps = 9/162 (5%) Query: 570 PVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIR 629 + + D A + E + A E ++ E S Sbjct: 870 AEEKAAREEQRRKLDETAALQRQREEEAEKRRAARKTGVPEPRAPAREAAPREASPERTA 929 Query: 630 KRRRRRRRRRPA-TDHHDAGVVSDVSSIQNVI---DDSFDMYMEPSDITNHNLLENGAHG 685 R R P+ D +AG ++ S + S Y+ P + G Sbjct: 930 PRLNLAGRTGPSWRDKREAGAATERPSSTQDVPPAQPSKGSYLAPHLRAREASSDRRDFG 989 Query: 686 FTENYDVSIPPVSTPEMESSNSSSD-----PIVKKTRWWKRR 722 D PP SSS + W+ R Sbjct: 990 RARGGDAPPPPRPMTRSPVPPSSSPAPQEGREEPRPGVWRPR 1031 >gi|329120395|ref|ZP_08249062.1| translation initiation factor IF2 [Neisseria bacilliformis ATCC BAA-1200] gi|327462350|gb|EGF08676.1| translation initiation factor IF2 [Neisseria bacilliformis ATCC BAA-1200] Length = 949 Score = 37.3 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 14/151 (9%), Positives = 34/151 (22%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 +E+ + ++ A K E + + + + S Sbjct: 233 KLERAERQARREAAKKQAQEEALAAKAGKAGENRSAKPSEQKPLAAAAQPSSKTADTSAN 292 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + R++ RR D + ++ E Sbjct: 293 AANPSGGSRKKDDRRNSRDDEGQSRNAKGKGGKGGRDRNAGRGDDERVRGGKKGKKLKLE 352 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 + P V + + + +D K Sbjct: 353 PNQHAFQAPTEPVVHEVLVPETITVADLAHK 383 >gi|324501842|gb|ADY40816.1| Pre-mRNA-splicing factor CWC22 [Ascaris suum] Length = 631 Score = 37.3 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 2/163 (1%) Query: 539 IVEYEARFGVSIN--VVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIEC 596 +VE+ + SI V I + + ++ E Sbjct: 3 VVEFRCKHKKSIREVVRGEGRRRHSKDEISGEDQRSSEDEGRMEKQRKGHRGHRERRREE 62 Query: 597 VWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSI 656 ++ + + + G K RR+R R + ++ S Sbjct: 63 GEDEKRDSGHGRRREESRRSSSGERRQCDGDREKSRRKRNRDEKRNKRSNEERNNERSPS 122 Query: 657 QNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVST 699 + + E D HN + VS Sbjct: 123 PKRKERTEKRRTEEFDEGAHNKASPKMDNAEKVEQVSKEKKEP 165 >gi|85084961|ref|XP_957412.1| hypothetical protein NCU07187 [Neurospora crassa OR74A] gi|28918503|gb|EAA28176.1| predicted protein [Neurospora crassa OR74A] gi|28950228|emb|CAD71095.1| hypothetical protein [Neurospora crassa] Length = 1560 Score = 37.3 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 46/193 (23%), Gaps = 14/193 (7%) Query: 540 VEYEARFGVSINVVIGIELADKLFYIEKGSPV--QALVNTGHKVGSDSQAPSYDKNIECV 597 E++ V F I+ G+ + Sbjct: 1215 AYLESQHSVRSGRQPD-----PEFSIDLGNNQILDQSEPEEEDDVPMPGRDYEEDVSMPG 1269 Query: 598 WQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR---RRRRRRPATDHHDAGVVSDVS 654 E SE D D + T +++ +D + S S Sbjct: 1270 SNHEEDNEENDSEEDHDEGDQEEESQQTTPRPQKQASLSEEPASPALSDLSASSNDSFPS 1329 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT--ENYDVSIPPVSTPEMESSNSSSDPI 712 Q S +P T + + + + ++ E +S Sbjct: 1330 LSQTTTKSSQRKASQPPKSTPRDPIPTTSKTRKSLDAVNLDYEQAMKRLDEEESSQESTT 1389 Query: 713 VKKT--RWWKRRK 723 + T + KRR+ Sbjct: 1390 MDDTQLKVEKRRQ 1402 >gi|257875275|ref|ZP_05654928.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809441|gb|EEV38261.1| predicted protein [Enterococcus casseliflavus EC20] Length = 349 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 7/142 (4%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + +T + + + P K + + + ++ Sbjct: 22 REKKREQPEDTPRNPRIEKFQAQGKQASPSSGKKRPKKPPQKEPTGQAPAKKKRKKAAST 81 Query: 627 VIRKR-------RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 R + +++ R A+ +A Q + + +N N Sbjct: 82 ANRPKLPTEKQHPSKQKERAAASTTSEAPRKKKKRPPQQARPSQRNEPGKTKKSSNPNAK 141 Query: 680 ENGAHGFTENYDVSIPPVSTPE 701 G H + TP+ Sbjct: 142 SKGTHKQGKKPAEVSQKRPTPQ 163 >gi|221484158|gb|EEE22454.1| hypothetical protein TGGT1_031250 [Toxoplasma gondii GT1] Length = 296 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 12/148 (8%), Positives = 30/148 (20%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+K V+A + ++ + + + E+ E + Sbjct: 31 RIDKEERVEATEHNRATSAEAARRVFTRQPGRNAHTHSQPVHGLQREARERGGKTKKGIK 90 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 R++ RR + + I + D E Sbjct: 91 RKNQPRRKPERRGGGEKEDREREGERNQGERKRRESIQEERGSGEARRDKQGERRQEKQK 150 Query: 684 HGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + + Sbjct: 151 GKASSESAKGRKKRENDKRRKQKGKGEE 178 >gi|171685884|ref|XP_001907883.1| hypothetical protein [Podospora anserina S mat+] gi|170942903|emb|CAP68556.1| unnamed protein product [Podospora anserina S mat+] Length = 1043 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 8/74 (10%), Positives = 20/74 (27%) Query: 618 NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHN 677 N + + K+ ++ R+ G + QN + D + + Sbjct: 431 NKDARKDEKQEGKKEDKKDERQEGKKDDKKGDRGKQDNPQNNKKAAGDSSGTSQNQNKSD 490 Query: 678 LLENGAHGFTENYD 691 + + N Sbjct: 491 QQKPDGGNQSSNNA 504 >gi|148685340|gb|EDL17287.1| retinoblastoma binding protein 6, isoform CRA_e [Mus musculus] Length = 1646 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 44/167 (26%), Gaps = 5/167 (2%) Query: 554 IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 I D LF + + + S + DK+ + + K +S Sbjct: 823 IDETKTDTLFVLPSRDDATPVRDEPMDAESITFKSVSDKDKREKDKPKVKSDKTKRKSDG 882 Query: 614 DIQDNIVSEESTGVIRKRR-RRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 + + + R + P ++ + + I +V S E Sbjct: 883 SATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVT 942 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVST---PEMESSNS-SSDPIVKK 715 T A E V +++S S D KK Sbjct: 943 GTPRKAHSKSAKEHQEAKPAKDEKVKKDCSKDIKSEKPASKDEKAKK 989 >gi|298693377|gb|ADI96599.1| Protein A [Staphylococcus aureus subsp. aureus ED133] Length = 524 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 16/177 (9%), Positives = 39/177 (22%), Gaps = 2/177 (1%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ + K E A + E + Sbjct: 294 EQRNGFIQSLKDDPSV-SKEILAEAKKLNDAQAPKEEDNNKPGKEDGNKPGKEDNNKPGK 352 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 + + + + + +P + + D + + Sbjct: 353 EDNNKPGKEDGNKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDGN 412 Query: 663 SFDMYMEPSD-ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + N + G T N + ++ + N +D + K Sbjct: 413 KPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQ 469 >gi|195385426|ref|XP_002051407.1| GJ12419 [Drosophila virilis] gi|194147864|gb|EDW63562.1| GJ12419 [Drosophila virilis] Length = 2967 Score = 37.3 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 16/168 (9%), Positives = 37/168 (22%) Query: 542 YEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE 601 E + V + L IE + +A + K + D + + Sbjct: 630 IEQVYKVRLIETADEALEIVKKSIEAETTKEADESEPRKKLQTVAEKTEDIKKQNTNHAD 689 Query: 602 ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVID 661 + + + + + A V+ +S Sbjct: 690 KEEEPKPIKEATAAEKHAEPAAEPAKETLENNTKTAANEQAEPQQATAVAIISESVEPAA 749 Query: 662 DSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 + ++ E A T + E ++S Sbjct: 750 NGANIVEADVTAAVAAAAEIPASEPVAECGHDKKLTQTVQNELPSTSK 797 >gi|309360373|emb|CAP31400.2| CBR-TAG-214 protein [Caenorhabditis briggsae AF16] Length = 1234 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 39/150 (26%), Gaps = 2/150 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G Q N K S+ +++ +D+ + ++ +E Sbjct: 906 RGERNQKENNNDSKDHHRSKDLKKERDDGSESRDKKYQDKKAGTERKHEKERRYIDEQDK 965 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 K R+R R + ++ D +P + + E Sbjct: 966 K--KERKRDRNADEYDSDAPQVKIKREEKNKDDQQDRDRKKEDPENGKDWRRKERDREVK 1023 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 + +D + E ++ Sbjct: 1024 DKKHDKYKEKEREDDNEKVKQREKEKERQK 1053 >gi|219525743|gb|ACL15290.1| p200 [Babesia bovis] Length = 611 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 9/149 (6%), Positives = 31/149 (20%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + Q ++ + + ++ + +E+ Sbjct: 167 RQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEA 226 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +++ R+R + ++ + + E Sbjct: 227 ERKRQEAEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEEAEAERKRQEEAEAERKR 286 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKK 715 E + E E +K Sbjct: 287 QEEAEAERKRQEEAEAEKKRQEEAEAERK 315 >gi|194898519|ref|XP_001978826.1| GG11565 [Drosophila erecta] gi|229488242|sp|B3P211|EIF3A_DROER RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10 gi|190650529|gb|EDV47784.1| GG11565 [Drosophila erecta] Length = 1135 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 26/144 (18%), Gaps = 8/144 (5%) Query: 555 GIELADKLFYIEKGSPVQ--------ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPI 606 E + ++ + + D P Sbjct: 846 DDEKRRAQYEKQRAKEEEAERKIKEDRERLARDLASERERTEKERDTWRPRGGDRPSAPA 905 Query: 607 PKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDM 666 S G R R R R G D S+ + Sbjct: 906 VGSGEWRRAAPTASERNERGGERIERGGDRIERGGERIERGGDRDRDRKDNEGADSSWRV 965 Query: 667 YMEPSDITNHNLLENGAHGFTENY 690 EP ++ A ++ Sbjct: 966 RREPDSQRAAAPKDSNAQQSRDDK 989 >gi|74184387|dbj|BAE25723.1| unnamed protein product [Mus musculus] Length = 999 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 26/118 (22%), Gaps = 2/118 (1%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 ++ GSP + K DS++ + + E + + Sbjct: 21 HLKVQSGSPKEEKKLREKKAHKDSESAA--PEYREHKSRDPDREARHKEKTAERDLYTST 78 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 E G + R + RR+ D D Sbjct: 79 EHPRGERDRERHKERRKDAKDREKDKLKERHRDQEAEKAHSRGKDREREKDRRARKEE 136 >gi|46125725|ref|XP_387416.1| hypothetical protein FG07240.1 [Gibberella zeae PH-1] Length = 1548 Score = 37.3 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 39/139 (28%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVI 628 + K ++A D++ + + S+ + + ++ + + Sbjct: 860 HDKNRVEKLSEKYHDRTKALKRDESRDRLSVSGDGSAKRHRASITPDRPSNGDKDDSELP 919 Query: 629 RKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTE 688 KRRR + N D S + + + E A+ Sbjct: 920 PKRRRLEGETKEKRPKQALSSDERPRKPNNAQDSSKPVAKSIQKKHDDDKRERRANSHRA 979 Query: 689 NYDVSIPPVSTPEMESSNS 707 + D + ++S + Sbjct: 980 DTDRASSAERQIHVKSEET 998 >gi|322786718|gb|EFZ13087.1| hypothetical protein SINV_01289 [Solenopsis invicta] Length = 1987 Score = 37.3 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 6/163 (3%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 I S + Q + + +E + EA + + + + Sbjct: 834 HTDISVASESEDSEGYESDTTEPEQTKTRLRGMEERKRKEARRAEERIRADDVTVSDGED 893 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL-- 679 E+ ++ RR RR + + SD D + + + Sbjct: 894 EKDISDEPRKGRRLRRTPGKSQGIKSEPDSDQEEQPKGRDFDLNQIRSELKGFDKAVKME 953 Query: 680 ----ENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 E ++ + + ++P++E +N S V +T+ Sbjct: 954 IVRMEPEDEVKLDDKENTAAITTSPKLEKTNESPKVEVVETKV 996 >gi|302653540|ref|XP_003018594.1| PE repeat family protein [Trichophyton verrucosum HKI 0517] gi|291182251|gb|EFE37949.1| PE repeat family protein [Trichophyton verrucosum HKI 0517] Length = 701 Score = 37.3 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 15/157 (9%), Positives = 42/157 (26%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 EK K + + P+ + + + + +V E+ Sbjct: 212 EKPQDDSPPAEDVVKEAAPPEQPAAEPVAKEEPVSSPTEELKTIKEPTPQPAPVVEEKPA 271 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 I++ + P ++ + + + + + + + + + + Sbjct: 272 EEIKEEPVPQAVEAPVSEDTASKPIIEEPAAVEDAPNHKAAEEAAVESKSKSRSKERSKE 331 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 ++ S P E S KK + R Sbjct: 332 RSKEKRHKKHRRSAPAEEPPRPSKSSGEKKPSSRRPR 368 >gi|198429639|ref|XP_002120578.1| PREDICTED: similar to KPL2 [Ciona intestinalis] Length = 1769 Score = 37.3 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 36/184 (19%), Gaps = 14/184 (7%) Query: 549 SINVVIGIELADKL--FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD------ 600 I V + I + + + Q + + V+ Sbjct: 746 QIKNVQDPAFEHEQVQHRITSFHSNWEKMEKLYSEITTVQHVDAEAAKDTVYAQLEKTVF 805 Query: 601 ------EALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVS 654 + + L D + +E R R + Sbjct: 806 STLNKIQEKSEEEFAAELSDKLSEEIPKEEVKPQRSDLLRPDSASSRKSKDSIRSARSKT 865 Query: 655 SIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVK 714 E SD + + + + + PP E + P Sbjct: 866 KSGKGSARDRKKSGEKSDKKSRSRSASSKSSKDKRKSATPPPAPVAEAVEPEEVNKPKPG 925 Query: 715 KTRW 718 W Sbjct: 926 DQGW 929 >gi|149025112|gb|EDL81479.1| similar to transcriptional regulating protein 132 (predicted) [Rattus norvegicus] Length = 1003 Score = 37.3 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 39/169 (23%), Gaps = 7/169 (4%) Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALL 604 + + + L Q V K + + E Sbjct: 780 YKKQVKIGRNGTLTFGDLDTGAEKSGQEEVEVDVKTSQKFPRVLPPRRESPSEERLEPKR 839 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDS 663 + + + + + E+ + R RR AT + + +V I S Sbjct: 840 EMKEPKKEGEEEVPDTQEKGEQEEGRERSRRAAAVKATQ-----TLQPTEAANDVLILRS 894 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + S + G + PE + + + Sbjct: 895 HEPNAPGSASVQTSEKPREGPGKSRRALPFTEKKKKPEAFNKTQNQENT 943 >gi|113199781|ref|NP_666151.3| WD repeat-containing protein 60 [Mus musculus] gi|81914087|sp|Q8C761|WDR60_MOUSE RecName: Full=WD repeat-containing protein 60 gi|26342709|dbj|BAC35011.1| unnamed protein product [Mus musculus] Length = 999 Score = 37.3 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 26/118 (22%), Gaps = 2/118 (1%) Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 ++ GSP + K DS++ + + E + + Sbjct: 21 HLKVQSGSPKEEKKLREKKAHKDSESAA--PEYREHKSRDPDREARHKEKTAERDLYTST 78 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLL 679 E G + R + RR+ D D Sbjct: 79 EHPRGERDRERHKERRKDAKDREKDKLKERHRDQEAEKAHSRGKDREREKDRRARKEE 136 >gi|321262561|ref|XP_003195999.1| histone deacetylation-related protein [Cryptococcus gattii WM276] gi|317462474|gb|ADV24212.1| histone deacetylation-related protein, putative [Cryptococcus gattii WM276] Length = 852 Score = 37.3 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 8/112 (7%), Positives = 23/112 (20%), Gaps = 8/112 (7%) Query: 614 DIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDI 673 E+ ++R R +D D + + Sbjct: 230 KKPGPTAQAEARKEKPRKRAR------MSDAEDDEKDARDEKDARADSKPPKKKERERET 283 Query: 674 TNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT--RWWKRRK 723 + + P +++ N + + + W + Sbjct: 284 RKVPSSQASRATSPDKSRRPSPRSKDKDVKLQNGVASAVEGRDEIGVWTEHR 335 >gi|302927727|ref|XP_003054558.1| hypothetical protein NECHADRAFT_31703 [Nectria haematococca mpVI 77-13-4] gi|256735499|gb|EEU48845.1| hypothetical protein NECHADRAFT_31703 [Nectria haematococca mpVI 77-13-4] Length = 650 Score = 37.3 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 19/188 (10%), Positives = 51/188 (27%), Gaps = 4/188 (2%) Query: 529 LYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 + + + E R+ + E ++ I + + D + Sbjct: 412 DDMDEDENKDVRMTEHRWDKQVEHEGEFEPSEDDDEIARAHGATRQNSNKRTFT-DYRKG 470 Query: 589 SYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAG 648 + + V + + ++ D ++ + + + A + Sbjct: 471 EMEVDSGNVTPKAPNGASVEEPAGDETHDINDDTIEDMSAHEQPEKDQPEKEAEKPEETA 530 Query: 649 VVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSS 708 ++ +S+ N D D T + E + P + ES+ Sbjct: 531 KETEKTSVDNDGDVGMTDSAPAEDTTTIKKEDVEPETTAEPAAPAEKP---TQEESTTKE 587 Query: 709 SDPIVKKT 716 + K+T Sbjct: 588 APEATKET 595 >gi|255727318|ref|XP_002548585.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240134509|gb|EER34064.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 773 Score = 37.3 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 50/180 (27%), Gaps = 7/180 (3%) Query: 533 NQKRATIVEYEARFGVSINVV----IGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAP 588 N+K ++ E + + V+ + E+ V+ K + + Sbjct: 381 NEKDPDSIDIEKKESAEVIVLDEEATDEQKDHAEEIKEEVKESTTSVDESEKQDVATNSE 440 Query: 589 SYDKN---IECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHH 645 S D + + D+ ++ N E T + ++ + + Sbjct: 441 SVDSELKVEKNISTDDISTETVSMNESKNESKNESKNEETSPVELKQEENEQVSETNNDD 500 Query: 646 DAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESS 705 D + N D + ++ + ++ + P T + ++ Sbjct: 501 APENEKDNINANNTPDTIIEDPIKRVKFADEVESQSSKENTPAVELKTEPKEKTEDEDAE 560 >gi|146413268|ref|XP_001482605.1| hypothetical protein PGUG_05625 [Meyerozyma guilliermondii ATCC 6260] Length = 673 Score = 37.3 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 69/246 (28%), Gaps = 22/246 (8%) Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI--NVVIG 555 + R E + + V L + + R G +V+ Sbjct: 421 PNSFRDEREREIRKRIEKERESRIRSTGAVTNTKLKVNKDLAGRLQERQGDQAAESVIND 480 Query: 556 IEL----ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------- 601 + F +++ S +N + S +E Sbjct: 481 DRFKELFENPEFAVDEQSHEYKQLNPVRSTTQNGADRSRGLTAAEESDEERMRNGELEEL 540 Query: 602 ---ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + E+ ++ + ++ +R+RR+ + + V+ S N Sbjct: 541 EDESEESDESDENEQESEKQAKVQKEMERLRQRRKAKEEADRFMN--KMSAVAQQSQSNN 598 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTR 717 ++ P + + + + A G E V + +++ S+ K R Sbjct: 599 ESFETQVKKAAPRNKNDDSRIRRHARGEAELTFVPRKKTTQKVKVQDDRPESEKGRTKQR 658 Query: 718 WWKRRK 723 + RR+ Sbjct: 659 FDGRRR 664 >gi|320165966|gb|EFW42865.1| phosphoprotein [Capsaspora owczarzaki ATCC 30864] Length = 1153 Score = 37.3 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 2/130 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 +G ++ DS+ ++ + DE+ + + Q + T Sbjct: 967 RGRKADTAMDDFVDDEEDSRPKKGRRSKDSGSSDES--EEDAASTPSSSQGEDGGDGETA 1024 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 + R+RRR + +D S Q D + EP + G Sbjct: 1025 PKASKEERKRRREARKKEKRSRDKADKKSRQKRRRDDGSLEAEPRKAAREADSSDEDKGK 1084 Query: 687 TENYDVSIPP 696 + + +P Sbjct: 1085 SSSSSSRVPK 1094 >gi|171769783|sp|A2R7P5|NST1_ASPNC RecName: Full=Stress response protein nst1 gi|134083288|emb|CAK46843.1| unnamed protein product [Aspergillus niger] Length = 1201 Score = 37.3 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 39/158 (24%), Gaps = 21/158 (13%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ Q + K + + E+ + EE Sbjct: 536 EQTRNEQRNAKKAREAQKRKDKKKLQKQAKEEEKARREAEKAAEEAAAKAEQEKKLEEQ- 594 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 RKR ++++R +A + + Q + + + E Sbjct: 595 --RRKREEQKKKREAERKAQEAERLRKEAEKQKRLREERERQAEIERKQREQ-------- 644 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + ++ KKT+ + RK Sbjct: 645 ----------KELEKKRREEARQNELREKKTKDERERK 672 >gi|327467110|gb|EGF12620.1| translation initiation factor IF2 [Streptococcus sanguinis SK330] Length = 930 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 5/182 (2%) Query: 505 RSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFY 564 R E +V ++ L + + + + R S + + Sbjct: 5 RLYEIAKELGKESKEVVARAKELGLDVKSHSSSVEADAGERIKSSFKKAAAPQATAEKPA 64 Query: 565 IEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEES 624 + SP + V ++ D E + A + P+S + + ++ EE+ Sbjct: 65 AAQPSPQKTPAKEVAPVKAELTEAKVDAKPEAKAETAAPVKRPQSRNFKAEREARAKEEA 124 Query: 625 TGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 RR+++ R+P D + + D P+D ++ + + Sbjct: 125 E-----RRKQQGNRKPQNKEQGKREDRDNRNKNRGNRNDRDRGNRPNDRRDNRGQDGRRN 179 Query: 685 GF 686 G Sbjct: 180 GQ 181 >gi|317009664|gb|ADU80244.1| 30S ribosomal protein S1 [Helicobacter pylori India7] Length = 556 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 60/246 (24%), Gaps = 12/246 (4%) Query: 58 FVDYGGNRHGFLPFLEIHPD--------YYQIPFSDRQALLKESNIAQT----DSEAVAD 105 FVD G + GFL EI D Y + ++ + + Sbjct: 305 FVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNK 364 Query: 106 DVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPKKFK 165 + LE + D + Sbjct: 365 PFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424 Query: 166 RQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLAGRYSVLMPNTSKGETISRKITN 225 + I ++ K + + + + + + ++ G I+ + Sbjct: 425 IKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGID 484 Query: 226 PVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKRDFEYLMRLWDNVRELALNSVAP 285 + + + E+ G + ++ +++ L R + A N+ Sbjct: 485 VLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSSNKVRASVHRLERKKEKEELQAFNTSDD 544 Query: 286 HLVYEE 291 + + Sbjct: 545 KMTLGD 550 >gi|315042241|ref|XP_003170497.1| peroxin 26 [Arthroderma gypseum CBS 118893] gi|311345531|gb|EFR04734.1| peroxin 26 [Arthroderma gypseum CBS 118893] Length = 454 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 4/152 (2%) Query: 573 ALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRR 632 + + + + D + + + I + E I E+ + R+R+ Sbjct: 226 RNEEWEYAREFINLSEALDDDRKEAFIQTLDNLIEEKEKGAQRAAEIQQEKEEELERQRK 285 Query: 633 RRR--RRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENY 690 +R R+R + Q + S +E Sbjct: 286 QREDEERQRAEEEKKKQEREQKQKQQQESLGGKSTSNHARSSSEVDYGIEKSNPSSPMKS 345 Query: 691 DVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 V P + + +S+ KK K R Sbjct: 346 RVVKPALKKTQPSEPSSAKQ--TKKNTTGKPR 375 >gi|307191643|gb|EFN75123.1| hypothetical protein EAI_04834 [Harpegnathos saltator] Length = 2879 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 9/168 (5%) Query: 564 YIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEE 623 I+K + + ++ D + + + +L Sbjct: 1910 SIKKLLEDDSDESNEDSSKEETSKEIEDHSSSASQKSLSSSRGISRGTLVPEDITQPPRR 1969 Query: 624 STGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGA 683 + +RRRR+ + ++ D+ + + + V ++ S + + Sbjct: 1970 KSDGETRRRRRKYDKNVSSSQFDSKKLKSKQTDEEVRGK-DNINSTASGSQAGTVARSQL 2028 Query: 684 HGFTENYDVSIPPVST--------PEMESSNSSSDPIVKKTRWWKRRK 723 + T+ PP+ P +NS+ P+ T +RRK Sbjct: 2029 YDTTKKASSPAPPLRKKRRRVTTYPRTPRNNSTISPVQSSTNAKRRRK 2076 >gi|296453429|ref|YP_003660572.1| transcription termination factor Rho [Bifidobacterium longum subsp. longum JDM301] gi|296182860|gb|ADG99741.1| transcription termination factor Rho [Bifidobacterium longum subsp. longum JDM301] Length = 689 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 38/151 (25%), Gaps = 2/151 (1%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + SD+ + N + Q A P L+ + Sbjct: 55 RAPKAAKTAKVVKAPQSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDE 114 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGF 686 +R RR+ A++ A D E D+ L+ G Sbjct: 115 TEPRRTRRKAADDAASEPRAARHRRDDDQSDFARRKPRKKADEAGDLL--ATLDLGDAAP 172 Query: 687 TENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 TE V P + D ++ R Sbjct: 173 TERRRERHEDVEVPLIRRVRDDEDEQPRRRR 203 >gi|212541847|ref|XP_002151078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium marneffei ATCC 18224] gi|210065985|gb|EEA20078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium marneffei ATCC 18224] Length = 764 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 31/138 (22%), Gaps = 3/138 (2%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG- 626 G+ + V SD A D V + E+ EE Sbjct: 607 GASKTNGATANNGVKSDKSASEADDTDAEVIDKTPITDENGVAVGEEAFGPFDEEEDAEL 666 Query: 627 --VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAH 684 + R RR+ P + Q I S +PS +L + Sbjct: 667 IARAERNRLRRKGINPKAVLDKKAKRDEKKPKQEDIAASSASEKDPSAGEEESLDKKKKG 726 Query: 685 GFTENYDVSIPPVSTPEM 702 E Sbjct: 727 SKKEKKPAETETREEKPS 744 >gi|198413907|ref|XP_002124378.1| PREDICTED: hypothetical protein [Ciona intestinalis] Length = 1300 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 10/155 (6%), Positives = 33/155 (21%), Gaps = 4/155 (2%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E+ + + + + + D + D + K D+ + E Sbjct: 43 ERKRTNEEVRHHDRRKERQEKPHHGDNERKKQNSDRQESSLEKERKERRKNDHDKTSERD 102 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R + R T + + + + + Sbjct: 103 KRRH----RDKSRDDVTKRRSRHRRTSSRGSTSSDHKELKEKNKQEGKRERKQRSDKSSS 158 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWK 720 + + + + ++ +R Sbjct: 159 RKVGKEGNRKKKEKETNSQRSEPNFTTIQNSRVGD 193 >gi|195449101|ref|XP_002071933.1| GK23613 [Drosophila willistoni] gi|194168018|gb|EDW82919.1| GK23613 [Drosophila willistoni] Length = 1190 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 65/636 (10%), Positives = 191/636 (30%), Gaps = 24/636 (3%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 D + + + ++A + +E++ + + Sbjct: 184 CDPEKIEAIQKKIKKLADAKSISPADVIDLNDLQKFIEDMVKAHDILKAENAILRRLIEK 243 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 + PE Q I + K +L K+ + K A +L Sbjct: 244 QSKRCTMESLIIDPEKNNDIPFLQNKIDSLSKELNMLRKAEDKQLKSTKLGAHVGDYNLD 303 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 + + + I++ I + E LE+ + + A ++ R Sbjct: 304 SNADTVFSKDTGLDNINKIIAERNALRKKIEALSDLEIKVNE-LQQKANLAEGVSDDLSR 362 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 + + +++ + + + A C D+ + +++ + + A+ Sbjct: 363 NLNEQDQYINDMENEIQEMQKYYESEVDKSKCNEAFLKCRCDDMRQQLMTAKCAAQRAEC 422 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + + + ++ + + + + + T+ V + D Sbjct: 423 QVMEIDVLRGELRKRDNALNAYDCQYQQLMNIVCDLNKKFTIRPSNCV----GSSFECPD 478 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 V + D + A + +Q+ LR G + +D ++ +L Sbjct: 479 VGDDLAVYTGATLDHIMNELCNQA-DCFKQINLRKSPGAPHISSLDDCSRE-----LDRL 532 Query: 444 KES-LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 K+ +KD ++ + + + R + E KV + ++ ++ Sbjct: 533 KDMIFQKDGQLDKLIEDNECLCQDAADNNNR--LSELDRKVQQLDEDTKFMEDGMRESIG 590 Query: 503 ILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +++ + + + + + + LL + + E + + + I +L+D Sbjct: 591 LIQDIGHVAKENDSLKDQLNNFKVTEANKLLKSYQDQLE--ECQLKMHMLQEINKKLSD- 647 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 ++ + + + ++ + + L P + +I+ + Sbjct: 648 --ALDNIGGDPKSIQKEFDERENLRKVDEKRHKQWGKIQDEDLRSPYLQDTTEIKKEVEL 705 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R+ RR T+ ++ S V+ N+ +M E ++ + Sbjct: 706 GNKSEERRRDGPGENRRLEKTEQDESKEQSGVTPKDNIR----EMSEEERELGLKQKVRP 761 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + E ++ ++E + +K R Sbjct: 762 DTNEKHEPKPIAKLDNVPEKLEKDTTDIPKETQKNR 797 >gi|190348966|gb|EDK41527.2| hypothetical protein PGUG_05625 [Meyerozyma guilliermondii ATCC 6260] Length = 673 Score = 37.3 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 69/246 (28%), Gaps = 22/246 (8%) Query: 498 SVALSILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSI--NVVIG 555 + R E + + V L + + R G +V+ Sbjct: 421 PNSFRDEREREIRKRIEKERESRIRSTGAVTNTKLKVNKDLAGRLQERQGDQAAESVIND 480 Query: 556 IEL----ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDE---------- 601 + F +++ S +N + S +E Sbjct: 481 DRFKELFENPEFAVDEQSHEYKQLNPVRSTTQNGADRSRGLTAAEESDEERMRNGESEES 540 Query: 602 ---ALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQN 658 + E+ ++ + ++ +R+RR+ + + V+ S N Sbjct: 541 EDESEESDESDENEQESEKQAKVQKEMERLRQRRKAKEEADRFMN--KMSAVAQQSQSNN 598 Query: 659 VIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTP-EMESSNSSSDPIVKKTR 717 ++ P + + + + A G E V + +++ S+ K R Sbjct: 599 ESFETQVKKAAPRNKNDDSRIRRHARGEAELTFVPRKKTTQKVKVQDDRPESEKGRTKQR 658 Query: 718 WWKRRK 723 + RR+ Sbjct: 659 FDGRRR 664 >gi|315504335|ref|YP_004083222.1| hypothetical protein ML5_3557 [Micromonospora sp. L5] gi|315410954|gb|ADU09071.1| hypothetical protein ML5_3557 [Micromonospora sp. L5] Length = 566 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 19/179 (10%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ VV + A + + +AP+ ++ + E ++ Sbjct: 298 FAVPVVPEPGSLREPVRAAAARRRDAEPDAPARRARTQEAPARRRD----EEREPVVRAR 353 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 E+ + + + R RR R + D+ + + +S + Sbjct: 354 DEEAAPARRTDGERPRRRRRDDEERVTRRSRNEERVSRRSRDDEDLVARYSAPPESGGRH 413 Query: 668 MEPSDITNHNLLENGAHGFTENYDV---SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P D + + + +V S PP +T E E W R+ Sbjct: 414 SAPPDTGGRHSAPPDSSRYATAAEVARYSAPPRATDEPEEP------------WDSPRR 460 >gi|331232673|ref|XP_003328998.1| hypothetical protein PGTG_10738 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307988|gb|EFP84579.1| hypothetical protein PGTG_10738 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 432 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 36/152 (23%), Gaps = 5/152 (3%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 E P +A S+AP + K + SE+ Sbjct: 94 EASPPKEAAKPPAAPPKEASKAPEAPPKEAAKPPEAPPKEAAKPPEALPKEAAKPSED-- 151 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 ++ + P + + + + P D + G Sbjct: 152 ---PQKEAAKPSEDPPKEAEPHQKLGRPPNQPTRNLQKLEDSKPPEDAPPKEGGKLPEAG 208 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 P +TP E+S + P K Sbjct: 209 AASEPADKKPAETTPPKEASKTPEAPPSKDAG 240 >gi|261193948|ref|XP_002623379.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] gi|239588393|gb|EEQ71036.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] Length = 457 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 31/116 (26%) Query: 567 KGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTG 626 + + N S S + + E K I D + Sbjct: 39 RRPALPRPENVPPSRPSLSDDKASSRRPARRPSKEESQSRSKGHGRPPIGDIFADPKEPS 98 Query: 627 VIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 R +RR RR + + + + + + +P D + + NG Sbjct: 99 KSRNQRRPRRNSDSSLMDIPSRPIDPEAERRRRERRQRERDAKPKDGKSRSKRSNG 154 >gi|226226159|ref|YP_002760265.1| hypothetical protein GAU_0753 [Gemmatimonas aurantiaca T-27] gi|226089350|dbj|BAH37795.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 698 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 32/135 (23%) Query: 577 TGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRR 636 + + ++ E + A + S D +E + +R R Sbjct: 324 AESRANERAPERGAERGAERGAERSAERAAGERSSRRDRSSEQTTERTADRAPERSGRPE 383 Query: 637 RRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPP 696 R ++ + + S ++ H + + P Sbjct: 384 RGESSSPRERPSRPERPDRARVRAEQSEGASDGAAENVREPRQARARHSEEQTSESRRPR 443 Query: 697 VSTPEMESSNSSSDP 711 E ++ D Sbjct: 444 REGVRDEPLRAALDD 458 >gi|238494130|ref|XP_002378301.1| transcription factor TFIIIB component, putative [Aspergillus flavus NRRL3357] gi|220694951|gb|EED51294.1| transcription factor TFIIIB component, putative [Aspergillus flavus NRRL3357] Length = 572 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 14/159 (8%) Query: 568 GSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGV 627 S + S + + +D A + P+ ++ + E+ Sbjct: 118 FSAFTLSQPPNATPAEPTPLLSIEVAPDESGEDRARVEEPQLSETLVNEEPSLVAETPAE 177 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 R +R++ PAT ++ ++ + P+ T+ N + T Sbjct: 178 ARPSKRQKTNAEPATPALESQRLTGP----------PQLATPPATQTSTNEETTESRDTT 227 Query: 688 ENYDVSIPPVSTPEMESSNSSSD----PIVKKTRWWKRR 722 E+ + T + S D +TR K R Sbjct: 228 ESQPPAEQNRKTTKSRKRKPSKDVNGGDTTTRTRERKPR 266 >gi|190608802|gb|ACE79732.1| coiled-coil Y protein [Drosophila willistoni] Length = 1198 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 65/636 (10%), Positives = 191/636 (30%), Gaps = 24/636 (3%) Query: 84 SDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISANN 143 D + + + ++A + +E++ + + Sbjct: 184 CDPEKIEAIQKKIKKLADAKSISPADVIDLNDLQKFIEDMVKAHDILKAENAILRRLIEK 243 Query: 144 DVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSLA 203 + PE Q I + K +L K+ + K A +L Sbjct: 244 QSKRCTMESLIIDPEKNNDIPFLQNKIDSLSKELNMLRKAEDKQLKSTKLGAHVGDYNLD 303 Query: 204 GRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIKR 263 + + + I++ I + E LE+ + + A ++ R Sbjct: 304 SNADTVFSKDTGLDNINKIIAERNALRKKIEALSDLEIKVNE-LQQKANLAEGVSDDLSR 362 Query: 264 DFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAKD 323 + + +++ + + + A C D+ + +++ + + A+ Sbjct: 363 NLNEQDQYINDMENEIQEMQKYYESEVDKSKCNEAFLKCRCDDMRQQLMTAKCAAQRAEC 422 Query: 324 FMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSID 383 + + + ++ + + + + + T+ V + D Sbjct: 423 QVMEIDVLRGELRKRDNALNAYDCQYQQLMNIVCDLNKKFTIRPSNCV----GSSFECPD 478 Query: 384 VNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKKL 443 V + D + A + +Q+ LR G + +D ++ +L Sbjct: 479 VGDDLAVYTGATLDHIMNELCNQA-DCFKQINLRKSPGAPHISSLDDCSRE-----LDRL 532 Query: 444 KES-LKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 K+ +KD ++ + + + R + E KV + ++ ++ Sbjct: 533 KDMIFQKDGQLDKLIEDNECLCQDAADNNNR--LSELDRKVQQLDEDTKFMEDGMRESIG 590 Query: 503 ILRSVEEYLLQYTA-HNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADK 561 +++ + + + + + + LL + + E + + + I +L+D Sbjct: 591 LIQDIGHVAKENDSLKDQLNNFKVTEANKLLKSYQDQLE--ECQLKMHMLQEINKKLSD- 647 Query: 562 LFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVS 621 ++ + + + ++ + + L P + +I+ + Sbjct: 648 --ALDNIGGDPKSIQKEFDERENLRKVDEKRHKQWGKIQDEDLRSPYLQDTTEIKKEVEL 705 Query: 622 EESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLEN 681 + R+ RR T+ ++ S V+ N+ +M E ++ + Sbjct: 706 GNKSEERRRDGPGENRRLEKTEQDESKEQSGVTPKDNIR----EMSEEERELGLKQKVRP 761 Query: 682 GAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + E ++ ++E + +K R Sbjct: 762 DTNEKHEPKPIAKLDNVPEKLEKDTTDIPKETQKNR 797 >gi|156082880|ref|XP_001608924.1| 200 kDa antigen p200 [Babesia bovis T2Bo] gi|154796174|gb|EDO05356.1| 200 kDa antigen p200 [Babesia bovis] Length = 1023 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 17/257 (6%), Positives = 58/257 (22%), Gaps = 5/257 (1%) Query: 465 LEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTH 524 LE R+R + + + + Sbjct: 428 LEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALE 487 Query: 525 SDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSD 584 ++ +R EA + + + ++ ++A + ++ Sbjct: 488 AERKRQEAEAERKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAE 547 Query: 585 SQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDH 644 + + + EA ++ E +E+ +++ R+R + Sbjct: 548 RKRQEAEAERKRQEALEAERKRQEALEAER-----KRQEAEAERKRQEAEAERKRQEAEA 602 Query: 645 HDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMES 704 + + + + + E + E E+ Sbjct: 603 ERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEA 662 Query: 705 SNSSSDPIVKKTRWWKR 721 + + + + Sbjct: 663 ERKRQEEAEAERKRQEE 679 >gi|156082103|ref|XP_001608544.1| pre-mRNA splicing factor [Plasmodium vivax SaI-1] gi|148801115|gb|EDL42520.1| pre-mRNA splicing factor, putative [Plasmodium vivax] Length = 544 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 35/144 (24%), Gaps = 1/144 (0%) Query: 574 LVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRR 633 S ++ Y + + K ED + + Sbjct: 296 KKKKSKHDNSSDRSSEYGEKGSAKNNSRSKSGSRKRSLSEDDGSRSRKRSLSEGGGGSKD 355 Query: 634 RRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYDVS 693 R+R ++ + N + S N + S Sbjct: 356 RKRSLSLKRENSSSNEKKGKRKRSNSSERSNYRSNSREMNKEKEDKSNDERSESRKSYKS 415 Query: 694 IPPVSTPEMESSNSSSDPIVKKTR 717 S E +S++ P+ K+T+ Sbjct: 416 PSNNSEKE-KSNDEKKKPVAKRTK 438 >gi|31657174|gb|AAH53573.1| CWC22 protein [Homo sapiens] Length = 848 Score = 37.3 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 49/205 (23%), Gaps = 18/205 (8%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + + E + + Sbjct: 658 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 703 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D S D + + +++R Sbjct: 704 SEKHRDQNSRGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 763 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ S D S M ++ + +NGA E Sbjct: 764 GERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSS 823 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 824 RYSEQSRESKKNQDRRREKSPAKQK 848 >gi|301628660|ref|XP_002943468.1| PREDICTED: plectin-1, partial [Xenopus (Silurana) tropicalis] Length = 4391 Score = 37.3 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 63/639 (9%), Positives = 158/639 (24%), Gaps = 81/639 (12%) Query: 83 FSDRQALLKESNIAQTDSEAVADDVTHGDVTIPNDHSLEEVAPIANFSQETEEESIISAN 142 + ++ + + + + + + +EE S E+E E + Sbjct: 1669 IALKEKEAENERLRRLAEDEAYQRKLLEEQAAQHKQDIEEKILQLKQSSESELERQRTIV 1728 Query: 143 NDVVSNVEDVKGGSPEDVPKKFKRQYCIQEVIKNRQILLVQIVKEERGNKGAAVTTYLSL 202 ++ + + ++ K ++ L + ++ A Sbjct: 1729 DETMKHRRVIEEEIRILKINFEKASAGKSDLELELNKLKNIADETQKSKVKAEQEAEKQR 1788 Query: 203 AGRYSVLMPNTSKGETISRKITNPVDRKNLKEIARGLEVPAGMGVILRTAGASRTKIEIK 262 + + + I + ++ A + E + Sbjct: 1789 QLALEEENRRREAEDKVKKIIAAEQEAARQRKTALEEVERLKAKAEEAKKQKELAEKEAE 1848 Query: 263 RDFEYLMRLWDNVRELALNSVAPHLVYEEGNLIKRAIRDLYCKDISEIIVSGEKGYREAK 322 + + E + + +E L++ I++ D + K E Sbjct: 1849 KQIQLAREAAHKKIEAEEKAYFAAVQQKEQELLQTRIQEQSALDKLKEEAERAKRMAEEA 1908 Query: 323 DFMKLLMPSYARIVRQYEDPHPIFFRSGIEVQLDSLHQTEVTLPSRGYVIINQTEALVSI 382 + + A + RQ + + E Sbjct: 1909 ERARTRAEHEAALSRQQAEEAERLKQKAEEEAQAKA------------------------ 1944 Query: 383 DVNSGRSTREHCIEDTALQTNLEAAEEIARQLRLRDLAGLIVVDFIDMEEKKNNRSVEKK 442 ++ A + EA E A + + + A L D E +K+ + EK Sbjct: 1945 -----------QAQEEAEKIRKEAELEAAMRGQA-EQAALKQKQLADAEMEKHKKFAEKT 1992 Query: 443 LKESLKKDRARVQVGAISNFGLLEMSRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALS 502 L++ + +E ++R + ++ + G ++ + + +L Sbjct: 1993 LRQKEQ----------------VEGELTKVRLQLEQTDHQKTILDDELGRLKEEVTDSLR 2036 Query: 503 ILRSVEEYLLQYTAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKL 562 + VEE L + + E + I + ++ Sbjct: 2037 QKKLVEEELFKVKI------------------------QMEELIKLKIRIEQENKML--- 2069 Query: 563 FYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSE 622 I K A + + L + + E E Sbjct: 2070 --ISKDKDNTQKFLAEEAEKMKQVAEEAARLSIEAQEAARLRKLAEDELSEQRALAEKML 2127 Query: 623 ESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENG 682 + + R + V +Q + E ++ L E Sbjct: 2128 KEKMQAVQEATRLKAEAELLQKQKELAVEQAKKLQEDKELMKQQLAEETEGFQKILEEER 2187 Query: 683 AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKR 721 + + + E+ + S ++ KK R Sbjct: 2188 RRQLDISTEAEHLKLQVAELSKAQSRAEEEAKKFRKQAE 2226 >gi|302869188|ref|YP_003837825.1| hypothetical protein Micau_4740 [Micromonospora aurantiaca ATCC 27029] gi|302572047|gb|ADL48249.1| hypothetical protein Micau_4740 [Micromonospora aurantiaca ATCC 27029] Length = 566 Score = 37.3 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 19/179 (10%) Query: 548 VSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIP 607 ++ VV + A + + +AP+ ++ + E ++ Sbjct: 298 FAVPVVPEPGSLREPVRAAAARRRDAEPDAPARRARTQEAPARRRD----EEREPVVRAR 353 Query: 608 KSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMY 667 E+ + + + R RR R + D+ + + +S + Sbjct: 354 DEEAAPARRTDGERPRRRRRDDEERVTRRSRNEERVSRRSRDDEDLVARYSAPPESGGRH 413 Query: 668 MEPSDITNHNLLENGAHGFTENYDV---SIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 P D + + + +V S PP +T E E W R+ Sbjct: 414 SAPPDTGGRHSAPPDSSRYATAAEVARYSAPPRATDEPEEP------------WDSPRR 460 >gi|10047283|dbj|BAB13430.1| KIAA1604 protein [Homo sapiens] Length = 937 Score = 37.3 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 49/205 (23%), Gaps = 18/205 (8%) Query: 515 TAHNIIVHTHSDVVLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQAL 574 +V + NQ+ + E R + + E + + Sbjct: 747 RKKGHGKTRSKEVDKLIRNQQTNDRKQKERR--------------QEHGHQETRTERERR 792 Query: 575 VNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRR 634 S +D S D + + +++R Sbjct: 793 SEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKR 852 Query: 635 RRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPS---DITNHNLLENGAHGFTENYD 691 RR +++ S D S M ++ + +NGA E Sbjct: 853 GERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSS 912 Query: 692 V-SIPPVSTPEMESSNSSSDPIVKK 715 S + + + P +K Sbjct: 913 RYSEQSRESKKNQDRRREKSPAKQK 937 >gi|85102253|ref|XP_961301.1| hypothetical protein NCU04145 [Neurospora crassa OR74A] gi|12718218|emb|CAC28762.1| conserved hypothetical protein [Neurospora crassa] gi|28922844|gb|EAA32065.1| hypothetical protein NCU04145 [Neurospora crassa OR74A] Length = 576 Score = 37.3 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 14/158 (8%), Positives = 29/158 (18%), Gaps = 3/158 (1%) Query: 559 ADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDN 618 + + + S + P+ ++ E +D Sbjct: 111 STPERASHRTTTSTREKMYFQPSRSHEEVPTARFADMNFNEERRARRATSYEKQPRPEDE 170 Query: 619 IVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNL 678 S +R R RR + + S D+ D+ Sbjct: 171 RPSRREEEKAPRREDERPARR---EEEKPLRREEEKSKDKRKDEEEKKARRQRDLARELE 227 Query: 679 LENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKT 716 E + S + Sbjct: 228 EMTDPGRKAEKKKTDRERERPEKERKLEDKSRRHKGPS 265 >gi|324504333|gb|ADY41871.1| Peptidyl-prolyl cis-trans isomerase 1 [Ascaris suum] Length = 871 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 41/157 (26%), Gaps = 1/157 (0%) Query: 555 GIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLED 614 + + +EK + H+ + + E + + L S S + Sbjct: 539 EEGVLIQETKVEKEHKNEHESPHKHRDADEEHRSESPQEDEKTHEYDTLPSKEPSSSPIE 598 Query: 615 IQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDIT 674 Q +V+ + R+ ++ D G D S + + + Sbjct: 599 GQSKLVNTDENPEDNDRQEKKGN-EEQEDKEVEGDKKDDSGMSEEERHEIKESEDEDKRS 657 Query: 675 NHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDP 711 + + D S+ ++ + Sbjct: 658 KTEKDDIAMREKSPADDRSMKGDDEKALKKKEVKDEK 694 >gi|242019382|ref|XP_002430140.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus humanus corporis] gi|212515231|gb|EEB17402.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus humanus corporis] Length = 902 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 9/233 (3%) Query: 494 RSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDVVL---YLLNQKRATIVE-YEARFGVS 549 + + I + +E L H + T +D L ++ T+ E Sbjct: 272 KENDQIVSHIDHTPQEVLTTDKQHTVDTPTENDQGKEELILHTSEQETLNSSKEPEVEKQ 331 Query: 550 INVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS 609 + + + I + + + S +I+ + ++ +S Sbjct: 332 PELKPEDSINQE--TIIESKCDEKSILNSKNETKIEAENSVQNDIK---ETPKIIEDNES 386 Query: 610 ESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYME 669 ++ + + + V E ++ R A + + + + + Sbjct: 387 KTEVEEKADSVPESIPAQKKRSPSRDSSEERAKEAALLSRNKNKKKGPEKEEVEAEEGEK 446 Query: 670 PSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRR 722 S N + N +S V T E ++ + K+ KRR Sbjct: 447 SSTTQNAKVENNAKAEIQNETKISTKNVVTTEKNHKDNFEENTTIKSGARKRR 499 >gi|115899370|ref|XP_800754.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115931687|ref|XP_001194172.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 1717 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 8/175 (4%) Query: 557 ELADKLFYIEKGSPV---QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLE 613 F I + P + V+ S S APS D + + +++ P S S Sbjct: 1404 SPESPEFIIVQDPPSLPPELPVDEIKLEPSVSAAPSEDYSEITDFTEDSTNEGPNSISRS 1463 Query: 614 DIQD-----NIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYM 668 + ++ ++R R ++R + A + + ++ + Sbjct: 1464 QAKAFKRAAEAEKRKAAVEKKRRDRDEAKKRAQGEAERAERIKQEYEDEKKRKEAEALER 1523 Query: 669 EPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTRWWKRRK 723 + L N ++ + E + KK +RK Sbjct: 1524 AARAVEEREKLANQEEERKRQAALAAERERRQQAEYKRKMEEMARKKREEDMKRK 1578 >gi|281182816|ref|NP_001162587.1| hypothetical protein LOC314306 [Rattus norvegicus] Length = 1089 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 39/169 (23%), Gaps = 7/169 (4%) Query: 546 FGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQD-EALL 604 + + + L Q V K + + E Sbjct: 866 YKKQVKIGRNGTLTFGDLDTGAEKSGQEEVEVDVKTSQKFPRVLPPRRESPSEERLEPKR 925 Query: 605 PIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNV-IDDS 663 + + + + + E+ + R RR AT + + +V I S Sbjct: 926 EMKEPKKEGEEEVPDTQEKGEQEEGRERSRRAAAVKATQ-----TLQPTEAANDVLILRS 980 Query: 664 FDMYMEPSDITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSSDPI 712 + S + G + PE + + + Sbjct: 981 HEPNAPGSASVQTSEKPREGPGKSRRALPFTEKKKKPEAFNKTQNQENT 1029 >gi|83682365|emb|CAJ28172.1| immunoglobulin G binding protein A precursor [Staphylococcus aureus] Length = 475 Score = 37.3 bits (84), Expect = 9.8, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 43/181 (23%), Gaps = 10/181 (5%) Query: 543 EARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEA 602 E R G ++ ++ E + + L + D+ P + N + +D Sbjct: 267 EQRNGFIQSLKDDPSVSK-----EILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDGN 321 Query: 603 LLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDD 662 ++ N +E K + + N Sbjct: 322 KPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDGNKPGKEDNKKPGKEDGNKPGK 381 Query: 663 SFDMYMEPSDITNHNLLENG-----AHGFTENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 D + G T N + ++ + N +D + K Sbjct: 382 EDGNKPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPG 441 Query: 718 W 718 Sbjct: 442 Q 442 >gi|330801236|ref|XP_003288635.1| hypothetical protein DICPUDRAFT_152902 [Dictyostelium purpureum] gi|325081308|gb|EGC34828.1| hypothetical protein DICPUDRAFT_152902 [Dictyostelium purpureum] Length = 1853 Score = 37.3 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 44/189 (23%), Gaps = 9/189 (4%) Query: 468 SRQRIRSSVLESTTKVCTYCKGAGYIRSQSSVALSILRSVEEYLLQYTAHNIIVHTHSDV 527 +R ES+ + + G I S + + R + + + Sbjct: 1340 NRDSSHRKDRESSHRGSDHSNGTASIVSNGNGSS---RDHHRDKDHHRESHREHRSSERE 1396 Query: 528 VLYLLNQKRATIVEYEARFGVSINVVIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQA 587 +++ + + E R DK E+ Sbjct: 1397 HRSDRSKEHRSDRDKEHRSDRDKEHRSD---RDKEHRSEREKDQHRSDRNKEHRSG---E 1450 Query: 588 PSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDA 647 + + + + E Q + + R R + DH + Sbjct: 1451 RDKEHRSDRDKEHRSDRDKEHRSEREKDQHREARTSIGEREKDQNRDHREKDQNRDHKEK 1510 Query: 648 GVVSDVSSI 656 V + I Sbjct: 1511 EVKEPIKEI 1519 >gi|195390642|ref|XP_002053977.1| GJ23047 [Drosophila virilis] gi|194152063|gb|EDW67497.1| GJ23047 [Drosophila virilis] Length = 1092 Score = 37.3 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 14/157 (8%), Positives = 37/157 (23%), Gaps = 5/157 (3%) Query: 553 VIGIELADKLFYIEKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESL 612 I ++ I + + ++ D + A Sbjct: 211 EIDHDMDTSNATIVNTEIISEDE-----LPPPTKPEINDAEEVSDEELPAPQRAELPADA 265 Query: 613 EDIQDNIVSEESTGVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSD 672 E I ++ + + + +R+ D ++ D Q+ + + + Sbjct: 266 EVISEDELPTHNNNNNNNESKGSGKRKAGRDANETHEKIDDEQQQSNSETNTKVKQTEQY 325 Query: 673 ITNHNLLENGAHGFTENYDVSIPPVSTPEMESSNSSS 709 E+ +E + E S Sbjct: 326 NPGSPTSESNDAPPSEKRPRVDEDAEHKDKEKEKDSQ 362 >gi|50304989|ref|XP_452452.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641585|emb|CAH01303.1| KLLA0C05676p [Kluyveromyces lactis] Length = 511 Score = 37.3 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 46/143 (32%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEESTGVIRKR 631 L+ G + + S + ++ ++ P S + +D ++ + Sbjct: 142 DTLLKNGSAMSTAPATDSTNAALKINGDGDSTKIEPASSTTSSTKDQKTKGKTKEETNNK 201 Query: 632 RRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFTENYD 691 R + + + S ++ +N + D N + + T Sbjct: 202 VPRTTAKNTKSAASKSAKNSKATTAKNKKEPVKKDSRAKQDNKNKQDNKPKSESSTPGST 261 Query: 692 VSIPPVSTPEMESSNSSSDPIVK 714 ++ +TPE+ + N + + + Sbjct: 262 IATLSNNTPEVSALNETKVKLEQ 284 >gi|115495587|ref|NP_001069025.1| serine/threonine-protein kinase PRP4 homolog [Bos taurus] gi|122132413|sp|Q08DZ2|PRP4B_BOVIN RecName: Full=Serine/threonine-protein kinase PRP4 homolog; AltName: Full=PRP4 pre-mRNA-processing factor 4 homolog gi|115305048|gb|AAI23500.1| PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Bos taurus] gi|296473980|gb|DAA16095.1| serine/threonine-protein kinase PRP4 homolog [Bos taurus] Length = 1008 Score = 37.3 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 32/150 (21%), Gaps = 1/150 (0%) Query: 569 SPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIV-SEESTGV 627 Q V D + + + + + + + +S Sbjct: 246 RRSQEKVGKARSPVDDKAKVEDKSKAKDRKKSPVINESRSRDRGKKSRSPVDLRGKSKDR 305 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 + + R+ +R A + + S S + Sbjct: 306 RSRSKERKSKRPEADKEKKPVKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKQRDKSRR 365 Query: 688 ENYDVSIPPVSTPEMESSNSSSDPIVKKTR 717 + S S + S K+R Sbjct: 366 SRSPLVNDRRSKQSKSPSRTLSPGRRAKSR 395 >gi|74004927|ref|XP_545549.2| PREDICTED: similar to CG12750-PA [Canis familiaris] Length = 908 Score = 37.3 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 5/150 (3%) Query: 572 QALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKS----ESLEDIQDNIVSEESTGV 627 + + +S+ P++ I D ++ S + D + + E G Sbjct: 759 ERERRSEKYKDKNSRDPNWRNPITKYTSDRSVPSERNSYSRIVNDRDQEVHTDLENKHGD 818 Query: 628 IRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHGFT 687 +K+R RR +H S+ ++ ++ + +NGA Sbjct: 819 PKKKRGERRNSFSENEHRQRNKDSENVVRKDRSKSREKTRKHSGSRSDEDRYQNGAERRW 878 Query: 688 ENYDV-SIPPVSTPEMESSNSSSDPIVKKT 716 E S + + + P +K Sbjct: 879 EKSSRYSTQSRESKKHQDRRREKSPTKQKK 908 >gi|313244475|emb|CBY15259.1| unnamed protein product [Oikopleura dioica] Length = 398 Score = 37.3 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 39/153 (25%) Query: 566 EKGSPVQALVNTGHKVGSDSQAPSYDKNIECVWQDEALLPIPKSESLEDIQDNIVSEEST 625 + + +Q+ N G + + Q E +S+ + + Sbjct: 229 TRETNLQSQKNQGAPQSRTEDKNRRKNHNDERHQSERRQNTERSQENSNFLRRDDNPTRQ 288 Query: 626 GVIRKRRRRRRRRRPATDHHDAGVVSDVSSIQNVIDDSFDMYMEPSDITNHNLLENGAHG 685 R++ +RR + ++ S N D D E + + + Sbjct: 289 NNERRKSENDKRRSDSNSTKSNTPRDEIKSKMNRKRDEKDELEENVENFHEKVKNLSIKN 348 Query: 686 FTENYDVSIPPVSTPEMESSNSSSDPIVKKTRW 718 + +S P K+ Sbjct: 349 DDREVFIKEDKNDRKRRSRPLENSSPRKKEQGT 381 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.304 0.109 0.271 Lambda K H 0.267 0.0335 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,167,197,327 Number of Sequences: 14124377 Number of extensions: 163144037 Number of successful extensions: 1243267 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 23601 Number of HSP's successfully gapped in prelim test: 17926 Number of HSP's that attempted gapping in prelim test: 977691 Number of HSP's gapped (non-prelim): 183382 length of query: 723 length of database: 4,842,793,630 effective HSP length: 147 effective length of query: 576 effective length of database: 2,766,510,211 effective search space: 1593509881536 effective search space used: 1593509881536 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 84 (37.3 bits)